# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF354 PF04007.12 gi|242397998|ref|YP_002993422.1| - 2.6e-08 33.3 0.1 6.1e-08 32.1 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|242397998|ref|YP_002993422.1| - 0.0049 16.9 0.0 0.013 15.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|242397998|ref|YP_002993422.1| - 0.005 16.9 0.0 0.012 15.6 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like PrpR_N PF06506.11 gi|242397998|ref|YP_002993422.1| - 0.093 12.3 0.1 3.5 7.2 0.0 2.6 3 0 0 3 3 3 0 Propionate catabolism activator Epimerase_2 PF02350.19 gi|242397998|ref|YP_002993422.1| - 0.14 10.9 0.0 0.26 10.1 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_1 PF00534.20 gi|242397999|ref|YP_002993423.1| - 7.6e-16 58.1 0.0 1e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|242397999|ref|YP_002993423.1| - 1.8e-10 41.4 0.0 2.3e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|242397999|ref|YP_002993423.1| - 2.9e-08 34.0 0.0 5.7e-08 33.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|242398001|ref|YP_002993425.1| - 1.3e-35 122.7 0.0 2.3e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|242398001|ref|YP_002993425.1| - 1e-23 84.5 0.0 1.5e-23 83.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|242398001|ref|YP_002993425.1| - 1.5e-10 41.0 0.0 1.8e-09 37.5 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|242398001|ref|YP_002993425.1| - 2.7e-08 33.5 0.0 4.3e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|242398001|ref|YP_002993425.1| - 2.9e-05 24.1 0.0 4.5e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|242398001|ref|YP_002993425.1| - 6.5e-05 23.4 0.0 0.00015 22.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_7C PF02709.14 gi|242398001|ref|YP_002993425.1| - 8.8e-05 22.1 0.1 0.00019 21.0 0.1 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase GlcNAc PF11397.8 gi|242398001|ref|YP_002993425.1| - 0.17 11.3 0.3 0.23 10.9 0.3 1.3 1 1 0 1 1 1 0 Glycosyltransferase (GlcNAc) Glycos_transf_2 PF00535.26 gi|242398002|ref|YP_002993426.1| - 2.9e-26 92.3 0.0 3.8e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|242398002|ref|YP_002993426.1| - 0.00084 19.8 0.0 0.0013 19.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|242398002|ref|YP_002993426.1| - 0.00093 19.2 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|242398002|ref|YP_002993426.1| - 0.029 13.8 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 STT3 PF02516.14 gi|242398003|ref|YP_002993427.1| - 4.4e-15 55.6 25.0 1.1e-14 54.3 25.0 1.7 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|242398003|ref|YP_002993427.1| - 3.3e-06 27.4 18.8 3.3e-06 27.4 18.8 3.7 3 1 0 3 3 3 3 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF58 PF01882.18 gi|242398005|ref|YP_002993429.1| - 5.8e-19 68.2 0.1 1.2e-18 67.1 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|242398006|ref|YP_002993430.1| - 1.4e-62 209.4 0.0 2.1e-62 208.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|242398006|ref|YP_002993430.1| - 3.6e-21 74.8 0.1 6.8e-21 73.9 0.1 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|242398006|ref|YP_002993430.1| - 5.7e-16 58.8 0.0 1.4e-15 57.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|242398006|ref|YP_002993430.1| - 1.8e-08 33.8 0.0 4.6e-08 32.4 0.0 1.6 1 1 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|242398006|ref|YP_002993430.1| - 1.6e-06 27.7 0.2 0.013 14.9 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|242398006|ref|YP_002993430.1| - 3.2e-06 27.6 0.0 9.4e-06 26.1 0.0 1.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|242398006|ref|YP_002993430.1| - 1.3e-05 25.0 0.2 0.00024 20.8 0.2 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|242398006|ref|YP_002993430.1| - 0.00012 21.9 0.1 0.00094 19.0 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|242398006|ref|YP_002993430.1| - 0.026 14.9 0.0 0.1 12.9 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_lid_8 PF17868.1 gi|242398006|ref|YP_002993430.1| - 0.058 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA lid domain DUF4350 PF14258.6 gi|242398007|ref|YP_002993431.1| - 1.8e-10 41.1 0.0 5.3e-10 39.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|242398007|ref|YP_002993431.1| - 0.023 14.2 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 ABC-type uncharacterized transport system CarboxypepD_reg PF13620.6 gi|242398008|ref|YP_002993432.1| - 1.5e-05 25.2 0.0 0.0018 18.5 0.0 3.1 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|242398008|ref|YP_002993432.1| - 0.00037 20.4 0.2 0.058 13.4 0.0 3.0 3 0 0 3 3 3 1 CarboxypepD_reg-like domain Big_3_5 PF16640.5 gi|242398008|ref|YP_002993432.1| - 0.0035 17.5 0.0 0.098 12.9 0.0 2.8 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) Big_1 PF02369.16 gi|242398008|ref|YP_002993432.1| - 0.042 13.9 0.0 0.094 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) CooC_C PF15976.5 gi|242398008|ref|YP_002993432.1| - 0.09 12.8 0.1 0.77 9.8 0.0 2.4 2 0 0 2 2 2 0 CS1-pili formation C-terminal zf-ZPR1 PF03367.13 gi|242398008|ref|YP_002993432.1| - 0.22 11.3 0.1 2.2 8.1 0.0 2.2 2 0 0 2 2 2 0 ZPR1 zinc-finger domain DUF234 PF03008.14 gi|242398010|ref|YP_002993434.1| - 2e-24 85.9 0.7 8.7e-24 83.9 0.0 2.3 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|242398010|ref|YP_002993434.1| - 1.2e-14 54.8 6.2 9.1e-14 51.9 2.8 2.8 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|242398010|ref|YP_002993434.1| - 1.4e-09 38.1 0.6 3.2e-09 36.9 0.2 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|242398010|ref|YP_002993434.1| - 1.1e-05 25.9 0.2 0.00011 22.6 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|242398010|ref|YP_002993434.1| - 0.00038 20.8 0.0 0.001 19.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain HTH_38 PF13936.6 gi|242398010|ref|YP_002993434.1| - 0.1 12.4 0.3 0.37 10.6 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|242398010|ref|YP_002993434.1| - 0.12 12.3 0.0 1.6 8.6 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|242398010|ref|YP_002993434.1| - 0.14 12.1 0.1 0.55 10.2 0.1 1.9 1 0 0 1 1 1 0 MarR family SirB PF04247.12 gi|242398011|ref|YP_002993435.1| - 0.048 13.7 2.8 0.06 13.4 2.8 1.1 1 0 0 1 1 1 0 Invasion gene expression up-regulator, SirB OAD_gamma PF04277.13 gi|242398011|ref|YP_002993435.1| - 5.3 7.7 7.8 0.94 10.1 0.7 2.2 1 1 1 2 2 2 0 Oxaloacetate decarboxylase, gamma chain HEPN PF05168.14 gi|242398012|ref|YP_002993436.1| - 5.9e-22 78.0 0.8 6.6e-22 77.9 0.8 1.0 1 0 0 1 1 1 1 HEPN domain HEPN_SAV_6107 PF18726.1 gi|242398012|ref|YP_002993436.1| - 0.00086 19.8 0.0 0.0014 19.1 0.0 1.3 1 0 0 1 1 1 1 SAV_6107-like HEPN GatD_N PF18195.1 gi|242398012|ref|YP_002993436.1| - 0.11 11.9 0.0 0.67 9.3 0.0 2.1 2 0 0 2 2 2 0 GatD N-terminal domain NTP_transf_2 PF01909.23 gi|242398013|ref|YP_002993437.1| - 7.9e-08 32.5 0.5 1.6e-07 31.5 0.3 1.7 1 1 1 2 2 2 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|242398013|ref|YP_002993437.1| - 9.1e-07 28.9 0.5 1.6e-06 28.1 0.3 1.6 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Adenyl_cycl_N PF12633.7 gi|242398013|ref|YP_002993437.1| - 0.062 13.2 0.0 0.083 12.8 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain RAP PF08373.10 gi|242398013|ref|YP_002993437.1| - 0.068 13.3 0.1 0.17 12.0 0.1 1.8 1 0 0 1 1 1 0 RAP domain DUF1616 PF07760.11 gi|242398014|ref|YP_002993438.1| - 4e-96 321.8 0.0 4.7e-96 321.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) 7TMR-DISM_7TM PF07695.11 gi|242398014|ref|YP_002993438.1| - 1.6 8.6 9.9 1.2 9.0 6.7 2.0 2 0 0 2 2 2 0 7TM diverse intracellular signalling tRNA_anti-codon PF01336.25 gi|242398015|ref|YP_002993439.1| - 0.00044 20.2 1.3 0.76 9.8 0.1 3.8 3 1 1 4 4 4 2 OB-fold nucleic acid binding domain Ig_GlcNase PF18368.1 gi|242398015|ref|YP_002993439.1| - 0.16 12.2 0.1 1.6 9.0 0.0 2.4 3 0 0 3 3 3 0 Exo-beta-D-glucosaminidase Ig-fold domain Rep_fac-A_3 PF08661.11 gi|242398015|ref|YP_002993439.1| - 0.18 12.2 0.0 1.1 9.6 0.0 2.3 2 2 2 4 4 4 0 Replication factor A protein 3 TctA PF01970.16 gi|242398016|ref|YP_002993440.1| - 2.3e-38 132.0 34.4 3.3e-38 131.5 34.4 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family AAA_14 PF13173.6 gi|242398017|ref|YP_002993441.1| - 2.9e-23 82.3 0.0 5.1e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain HTH_36 PF13730.6 gi|242398017|ref|YP_002993441.1| - 0.001 19.0 0.1 0.0018 18.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|242398017|ref|YP_002993441.1| - 0.0058 16.2 0.1 0.011 15.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AAA_16 PF13191.6 gi|242398017|ref|YP_002993441.1| - 0.039 14.3 0.4 1 9.7 0.1 2.5 2 1 1 3 3 3 0 AAA ATPase domain HTH_5 PF01022.20 gi|242398017|ref|YP_002993441.1| - 0.041 13.8 0.0 0.079 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family ATPase_2 PF01637.18 gi|242398017|ref|YP_002993441.1| - 0.058 13.3 0.0 6.9 6.5 0.0 2.9 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea MarR_2 PF12802.7 gi|242398017|ref|YP_002993441.1| - 0.11 12.5 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|242398017|ref|YP_002993441.1| - 0.15 12.0 0.0 0.46 10.5 0.0 1.8 1 0 0 1 1 1 0 HTH domain PT-TG PF14449.6 gi|242398017|ref|YP_002993441.1| - 0.23 11.4 2.2 0.3 11.0 0.1 2.2 2 1 0 2 2 2 0 Pre-toxin TG Peptidase_M73 PF12389.8 gi|242398018|ref|YP_002993442.1| - 2.1e-09 37.5 1.0 4.1e-09 36.6 1.0 1.6 1 1 0 1 1 1 1 Camelysin metallo-endopeptidase CusF_Ec PF11604.8 gi|242398018|ref|YP_002993442.1| - 0.037 14.0 0.0 0.092 12.7 0.0 1.6 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF Hydrolase_6 PF13344.6 gi|242398019|ref|YP_002993443.1| - 1.1e-31 108.9 0.0 4.4e-31 107.0 0.0 2.0 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|242398019|ref|YP_002993443.1| - 3.5e-20 71.8 0.1 9.1e-20 70.5 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD_2 PF13419.6 gi|242398019|ref|YP_002993443.1| - 5.8e-08 33.0 4.7 0.0016 18.6 0.1 3.4 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242398019|ref|YP_002993443.1| - 2.6e-07 31.1 0.7 0.12 12.6 0.0 3.5 2 1 1 4 4 4 2 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|242398019|ref|YP_002993443.1| - 2.3e-06 27.3 0.0 1.9e-05 24.3 0.0 2.5 3 1 0 3 3 3 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.12 gi|242398019|ref|YP_002993443.1| - 0.0023 17.7 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DRTGG PF07085.12 gi|242398019|ref|YP_002993443.1| - 0.0063 16.3 0.0 3.4 7.5 0.1 3.5 3 1 1 4 4 4 1 DRTGG domain DUF3293 PF11697.8 gi|242398019|ref|YP_002993443.1| - 0.024 15.1 0.0 0.13 12.7 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3293) GARS_N PF02844.15 gi|242398019|ref|YP_002993443.1| - 0.039 14.7 0.1 42 5.0 0.0 3.2 2 1 1 3 3 3 0 Phosphoribosylglycinamide synthetase, N domain Pyrophosphatase PF00719.19 gi|242398021|ref|YP_002993445.1| - 3.9e-56 189.3 0.4 4.5e-56 189.1 0.4 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase SHS2_Rpb7-N PF03876.17 gi|242398022|ref|YP_002993446.1| - 5.6e-19 68.3 0.2 1.2e-18 67.2 0.2 1.6 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|242398022|ref|YP_002993446.1| - 2.6e-15 56.5 2.3 2.6e-15 56.5 2.3 1.8 2 0 0 2 2 2 1 S1 RNA binding domain CSD2 PF17876.1 gi|242398022|ref|YP_002993446.1| - 0.64 10.2 5.5 2.8 8.2 0.2 2.9 2 1 1 3 3 3 0 Cold shock domain Spt4 PF06093.13 gi|242398023|ref|YP_002993447.1| - 2.7e-15 56.2 0.0 3.1e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|242398023|ref|YP_002993447.1| - 0.009 15.6 3.8 0.013 15.1 3.8 1.3 1 0 0 1 1 1 1 RecR protein zn-ribbon_14 PF16503.5 gi|242398023|ref|YP_002993447.1| - 0.02 14.4 1.7 0.027 14.0 1.7 1.2 1 0 0 1 1 1 0 Zinc-ribbon zf-ribbon_3 PF13248.6 gi|242398023|ref|YP_002993447.1| - 0.022 14.2 2.7 0.09 12.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|242398023|ref|YP_002993447.1| - 0.1 12.6 2.4 0.14 12.1 2.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRDD PF13597.6 gi|242398023|ref|YP_002993447.1| - 0.11 11.3 1.0 0.11 11.2 1.0 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-RRN7 PF11781.8 gi|242398023|ref|YP_002993447.1| - 0.33 10.7 0.1 0.33 10.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF35_N PF12172.8 gi|242398023|ref|YP_002993447.1| - 1.3 9.0 7.2 3.7 7.5 7.2 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|242398023|ref|YP_002993447.1| - 1.3 9.2 5.5 17 5.6 5.4 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DUF359 PF04019.12 gi|242398024|ref|YP_002993448.1| - 2.3e-39 133.9 0.1 3e-39 133.5 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF3903 PF13043.6 gi|242398024|ref|YP_002993448.1| - 0.026 14.3 0.5 0.06 13.1 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3903) Ribosomal_S24e PF01282.19 gi|242398025|ref|YP_002993449.1| - 6.8e-26 90.0 0.1 8.2e-26 89.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|242398026|ref|YP_002993450.1| - 2.7e-22 78.6 2.0 3.2e-22 78.4 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|242398026|ref|YP_002993450.1| - 0.0016 18.6 2.5 0.0016 18.6 2.5 1.5 2 0 0 2 2 2 1 Ribosomal protein L37e zf-NADH-PPase PF09297.11 gi|242398026|ref|YP_002993450.1| - 0.0041 16.8 0.8 0.0041 16.8 0.8 2.4 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|242398026|ref|YP_002993450.1| - 0.008 16.1 7.1 0.052 13.5 7.1 2.0 1 1 0 1 1 1 1 Nudix N-terminal GFA PF04828.14 gi|242398026|ref|YP_002993450.1| - 0.0096 16.2 1.6 0.083 13.2 0.1 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.7 gi|242398026|ref|YP_002993450.1| - 0.022 14.8 2.4 0.062 13.3 2.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|242398026|ref|YP_002993450.1| - 0.034 14.1 5.5 0.057 13.4 5.4 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|242398026|ref|YP_002993450.1| - 0.046 13.6 3.7 0.13 12.1 3.7 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|242398026|ref|YP_002993450.1| - 0.06 13.3 2.1 0.075 13.0 2.1 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|242398026|ref|YP_002993450.1| - 0.1 12.3 0.3 0.1 12.3 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|242398026|ref|YP_002993450.1| - 0.13 11.9 1.9 5.9 6.6 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger MTS PF05175.14 gi|242398027|ref|YP_002993451.1| - 4.6e-17 62.1 0.1 3.4e-16 59.2 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|242398027|ref|YP_002993451.1| - 2.5e-16 59.8 0.0 3.3e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|242398027|ref|YP_002993451.1| - 5.3e-12 45.7 0.8 6.9e-12 45.4 0.1 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|242398027|ref|YP_002993451.1| - 5.2e-10 39.9 0.0 1.1e-09 38.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|242398027|ref|YP_002993451.1| - 3.4e-08 33.5 0.0 5e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.12 gi|242398027|ref|YP_002993451.1| - 8.1e-08 32.8 0.0 1.5e-07 32.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|242398027|ref|YP_002993451.1| - 1.7e-07 31.2 0.0 2.7e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|242398027|ref|YP_002993451.1| - 4.2e-06 26.7 0.0 5.7e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|242398027|ref|YP_002993451.1| - 1.9e-05 25.3 0.0 4.9e-05 24.0 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|242398027|ref|YP_002993451.1| - 0.00025 21.0 0.0 0.00046 20.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|242398027|ref|YP_002993451.1| - 0.0004 19.7 0.0 0.0024 17.1 0.0 1.8 1 1 1 2 2 2 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|242398027|ref|YP_002993451.1| - 0.0035 16.9 0.0 0.0037 16.9 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|242398027|ref|YP_002993451.1| - 0.0051 16.3 0.1 0.037 13.5 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase Ubie_methyltran PF01209.18 gi|242398027|ref|YP_002993451.1| - 0.0052 16.1 0.1 0.0078 15.6 0.1 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.18 gi|242398027|ref|YP_002993451.1| - 0.0056 16.4 0.0 0.0077 15.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|242398027|ref|YP_002993451.1| - 0.014 15.1 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltr_RsmB-F PF01189.17 gi|242398027|ref|YP_002993451.1| - 0.022 14.4 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DUF2431 PF10354.9 gi|242398027|ref|YP_002993451.1| - 0.028 14.7 0.0 0.04 14.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) CMAS PF02353.20 gi|242398027|ref|YP_002993451.1| - 0.028 13.7 0.0 0.054 12.8 0.0 1.5 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase rRNA_methylase PF06962.12 gi|242398027|ref|YP_002993451.1| - 0.064 13.2 0.0 0.16 12.0 0.0 1.6 2 0 0 2 2 2 0 Putative rRNA methylase TPMT PF05724.11 gi|242398027|ref|YP_002993451.1| - 0.067 12.8 0.0 0.093 12.4 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) tRNA_U5-meth_tr PF05958.11 gi|242398027|ref|YP_002993451.1| - 0.1 11.6 0.1 0.15 11.0 0.1 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase N6_Mtase PF02384.16 gi|242398027|ref|YP_002993451.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_16 PF10294.9 gi|242398027|ref|YP_002993451.1| - 0.12 12.1 0.1 0.28 10.9 0.1 1.6 2 0 0 2 2 2 0 Lysine methyltransferase DOT1 PF08123.13 gi|242398027|ref|YP_002993451.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 AviRa PF11599.8 gi|242398027|ref|YP_002993451.1| - 0.22 11.0 0.0 0.38 10.2 0.0 1.4 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Wyosine_form PF08608.12 gi|242398029|ref|YP_002993453.1| - 4.9e-22 78.1 0.0 9.2e-22 77.2 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|242398029|ref|YP_002993453.1| - 1.8e-17 64.2 0.2 3.8e-17 63.2 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily DUF1776 PF08643.10 gi|242398029|ref|YP_002993453.1| - 0.016 14.6 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) DUF4523 PF15023.6 gi|242398029|ref|YP_002993453.1| - 0.032 14.0 0.1 0.046 13.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4523) HAD PF12710.7 gi|242398029|ref|YP_002993453.1| - 0.066 13.6 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase AhpC-TSA PF00578.21 gi|242398029|ref|YP_002993453.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 AhpC/TSA family SQHop_cyclase_C PF13243.6 gi|242398030|ref|YP_002993454.1| - 1.2e-12 47.5 1.5 0.075 12.1 0.0 5.4 4 2 1 5 5 5 5 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|242398030|ref|YP_002993454.1| - 2.4e-11 43.2 0.4 2.6e-05 23.9 0.0 4.2 4 0 0 4 4 4 2 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_N PF13249.6 gi|242398030|ref|YP_002993454.1| - 2.9e-11 43.0 0.1 0.0081 15.3 0.0 5.0 5 0 0 5 5 5 3 Squalene-hopene cyclase N-terminal domain TED_complement PF07678.14 gi|242398030|ref|YP_002993454.1| - 0.0024 17.0 0.5 0.38 9.7 0.1 3.4 3 1 1 4 4 4 2 A-macroglobulin TED domain Tubulin PF00091.25 gi|242398031|ref|YP_002993455.1| - 8.6e-31 107.7 0.7 1.1e-28 100.8 0.7 2.2 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|242398031|ref|YP_002993455.1| - 0.031 13.5 0.1 0.1 11.8 0.0 1.8 1 1 1 2 2 2 0 Tubulin like 2-Hacid_dh_C PF02826.19 gi|242398031|ref|YP_002993455.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MipZ PF09140.11 gi|242398032|ref|YP_002993456.1| - 0.015 14.6 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ DUF2207 PF09972.9 gi|242398032|ref|YP_002993456.1| - 0.02 13.7 0.1 0.02 13.7 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF1874 PF08960.10 gi|242398032|ref|YP_002993456.1| - 0.11 12.6 0.7 17 5.6 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1874) Class_IIIsignal PF04021.12 gi|242398033|ref|YP_002993457.1| - 2.5e-07 30.4 1.6 4.4e-07 29.7 1.6 1.4 1 0 0 1 1 1 1 Class III signal peptide TadF PF16964.5 gi|242398033|ref|YP_002993457.1| - 0.0038 17.0 0.8 0.0074 16.1 0.8 1.4 1 0 0 1 1 1 1 Putative tight adherence pilin protein F Cpn10 PF00166.21 gi|242398034|ref|YP_002993458.1| - 0.033 14.2 0.1 0.055 13.5 0.1 1.3 1 0 0 1 1 1 0 Chaperonin 10 Kd subunit Cadherin-like PF12733.7 gi|242398037|ref|YP_002993461.1| - 0.078 13.5 0.8 4.4 7.9 0.6 3.1 3 0 0 3 3 3 0 Cadherin-like beta sandwich domain DUF2341 PF10102.9 gi|242398038|ref|YP_002993462.1| - 3.2e-26 91.7 16.3 4.3e-15 56.1 6.0 3.0 2 0 0 2 2 2 2 Domain of unknown function (DUF2341) DUF2101 PF09874.9 gi|242398039|ref|YP_002993463.1| - 4.6e-73 245.3 16.3 5.4e-73 245.1 16.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2101) HTH_5 PF01022.20 gi|242398039|ref|YP_002993463.1| - 0.1 12.5 0.1 0.24 11.3 0.1 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF3487 PF11990.8 gi|242398039|ref|YP_002993463.1| - 0.16 11.8 0.3 0.16 11.8 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) RseC_MucC PF04246.12 gi|242398039|ref|YP_002993463.1| - 2.1 8.3 0.0 2.1 8.3 0.0 3.2 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC GATase PF00117.28 gi|242398040|ref|YP_002993464.1| - 7.3e-45 153.1 0.0 8.6e-45 152.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|242398040|ref|YP_002993464.1| - 5.9e-14 52.3 0.2 2.2e-12 47.2 0.2 2.6 1 1 1 2 2 2 1 Peptidase C26 GST_N_2 PF13409.6 gi|242398040|ref|YP_002993464.1| - 0.0033 17.7 0.0 0.056 13.7 0.0 2.3 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GATase_3 PF07685.14 gi|242398040|ref|YP_002993464.1| - 0.15 11.6 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|242398040|ref|YP_002993464.1| - 0.17 11.7 0.1 4.2 7.2 0.1 2.1 1 1 0 1 1 1 0 SNO glutamine amidotransferase family DUF5012 PF16404.5 gi|242398040|ref|YP_002993464.1| - 0.23 11.6 0.0 0.32 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5012) HEPN PF05168.14 gi|242398041|ref|YP_002993465.1| - 1.4e-23 83.2 4.5 1.7e-23 83.0 4.5 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|242398041|ref|YP_002993465.1| - 0.00069 19.5 0.3 0.00069 19.5 0.3 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Mrr_N PF14338.6 gi|242398041|ref|YP_002993465.1| - 0.098 12.8 0.1 5.5 7.2 0.0 2.2 1 1 1 2 2 2 0 Mrr N-terminal domain NTP_transf_2 PF01909.23 gi|242398042|ref|YP_002993466.1| - 2.7e-11 43.6 0.3 3.2e-11 43.4 0.3 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|242398042|ref|YP_002993466.1| - 5.8e-11 42.3 0.3 7.7e-11 41.9 0.3 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|242398042|ref|YP_002993466.1| - 0.0073 16.5 0.0 0.0089 16.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.13 gi|242398042|ref|YP_002993466.1| - 0.1 12.4 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 SMODS PF18144.1 gi|242398042|ref|YP_002993466.1| - 0.14 12.3 0.0 0.31 11.2 0.0 1.6 1 1 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Adenyl_cycl_N PF12633.7 gi|242398042|ref|YP_002993466.1| - 0.14 12.0 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain GMP_synt_C PF00958.22 gi|242398043|ref|YP_002993467.1| - 1.1e-34 118.3 0.0 2.3e-34 117.3 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|242398043|ref|YP_002993467.1| - 1.8e-13 50.2 0.0 3.7e-07 29.5 0.0 2.2 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|242398043|ref|YP_002993467.1| - 5.5e-05 22.8 0.0 0.0039 16.7 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|242398043|ref|YP_002993467.1| - 7.3e-05 22.4 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|242398043|ref|YP_002993467.1| - 7.3e-05 21.7 0.0 0.02 13.7 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase PAPS_reduct PF01507.19 gi|242398043|ref|YP_002993467.1| - 0.00054 20.0 0.0 0.001 19.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.21 gi|242398043|ref|YP_002993467.1| - 0.035 13.8 0.0 0.079 12.6 0.0 1.5 2 0 0 2 2 2 0 Asparagine synthase ATP_bind_3 PF01171.20 gi|242398043|ref|YP_002993467.1| - 0.035 13.9 0.0 0.088 12.6 0.0 1.7 1 1 0 1 1 1 0 PP-loop family DUF2124 PF09897.9 gi|242398043|ref|YP_002993467.1| - 0.21 11.5 1.0 5.7 6.8 0.1 2.8 2 1 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2124) IMPDH PF00478.25 gi|242398044|ref|YP_002993468.1| - 8.8e-148 491.9 12.0 1e-147 491.7 12.0 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|242398044|ref|YP_002993468.1| - 7.3e-30 103.2 9.4 5.8e-17 61.9 1.9 3.3 2 2 1 3 3 3 2 CBS domain NMO PF03060.15 gi|242398044|ref|YP_002993468.1| - 1.6e-07 31.1 9.3 0.00051 19.5 1.3 3.6 3 1 0 4 4 4 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|242398044|ref|YP_002993468.1| - 3e-07 29.8 11.1 3.7e-06 26.2 10.2 2.6 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|242398044|ref|YP_002993468.1| - 1.2e-06 28.0 7.0 2.2e-06 27.1 6.7 1.6 1 1 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|242398044|ref|YP_002993468.1| - 0.034 13.6 9.5 0.024 14.1 4.8 2.5 2 1 1 3 3 3 0 Histidine biosynthesis protein Zeta_toxin PF06414.12 gi|242398044|ref|YP_002993468.1| - 0.052 12.8 0.7 2.4 7.4 0.0 3.1 3 0 0 3 3 3 0 Zeta toxin ThiG PF05690.14 gi|242398044|ref|YP_002993468.1| - 0.057 12.7 10.3 0.056 12.7 3.6 3.2 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG sCache_3_2 PF17203.4 gi|242398044|ref|YP_002993468.1| - 0.11 12.6 2.1 0.32 11.1 0.1 2.6 2 1 1 3 3 3 0 Single cache domain 3 DUF1297 PF06973.12 gi|242398045|ref|YP_002993469.1| - 3.1e-73 245.4 0.1 4e-73 245.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|242398045|ref|YP_002993469.1| - 4.9e-34 116.9 0.0 8.8e-34 116.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|242398045|ref|YP_002993469.1| - 0.019 15.0 0.1 0.17 11.9 0.1 2.2 1 1 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|242398045|ref|YP_002993469.1| - 0.024 14.1 0.1 0.054 13.0 0.0 1.6 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain PAP2_3 PF14378.6 gi|242398046|ref|YP_002993470.1| - 2e-09 37.4 13.1 2e-09 37.4 13.1 2.2 2 1 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|242398046|ref|YP_002993470.1| - 2.8e-08 33.6 6.9 2.8e-08 33.6 6.9 2.7 2 1 1 3 3 3 1 PAP2 superfamily PAP2_C PF14360.6 gi|242398046|ref|YP_002993470.1| - 0.022 15.3 3.1 0.022 15.3 3.1 3.1 2 2 1 3 3 3 0 PAP2 superfamily C-terminal QRPTase_C PF01729.19 gi|242398047|ref|YP_002993471.1| - 6.9e-50 169.1 0.7 9.6e-50 168.7 0.7 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|242398047|ref|YP_002993471.1| - 4.3e-32 110.0 0.1 7.5e-32 109.3 0.1 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain TMP-TENI PF02581.17 gi|242398047|ref|YP_002993471.1| - 6.8e-05 22.3 0.0 0.00012 21.5 0.0 1.4 1 0 0 1 1 1 1 Thiamine monophosphate synthase Ribul_P_3_epim PF00834.19 gi|242398047|ref|YP_002993471.1| - 0.0073 15.7 0.6 0.028 13.8 0.5 1.9 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family ALAD PF00490.21 gi|242398047|ref|YP_002993471.1| - 0.01 15.0 0.1 0.015 14.5 0.1 1.2 1 0 0 1 1 1 0 Delta-aminolevulinic acid dehydratase Biotin_lipoyl_2 PF13533.6 gi|242398047|ref|YP_002993471.1| - 0.012 15.4 4.5 0.043 13.7 1.2 3.1 2 0 0 2 2 2 0 Biotin-lipoyl like NQRA PF05896.11 gi|242398047|ref|YP_002993471.1| - 0.015 14.7 0.9 0.045 13.2 0.1 1.9 2 0 0 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Biotin_lipoyl PF00364.22 gi|242398047|ref|YP_002993471.1| - 0.015 15.1 0.8 0.11 12.3 0.1 2.5 2 0 0 2 2 2 0 Biotin-requiring enzyme B12-binding PF02310.19 gi|242398047|ref|YP_002993471.1| - 0.023 14.7 0.7 0.051 13.6 0.1 1.8 2 1 0 2 2 2 0 B12 binding domain Lactamase_B_5 PF14597.6 gi|242398047|ref|YP_002993471.1| - 0.073 12.5 0.5 0.13 11.7 0.1 1.5 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily IMPDH PF00478.25 gi|242398047|ref|YP_002993471.1| - 0.082 11.9 1.7 0.095 11.7 1.7 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain NadA PF02445.16 gi|242398048|ref|YP_002993472.1| - 1.5e-111 372.4 0.9 1.7e-111 372.2 0.9 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sua5_yciO_yrdC PF01300.18 gi|242398048|ref|YP_002993472.1| - 0.023 14.2 0.0 0.06 12.8 0.0 1.7 1 0 0 1 1 1 0 Telomere recombination FAD_binding_2 PF00890.24 gi|242398049|ref|YP_002993473.1| - 1.7e-64 218.4 0.0 2.2e-64 218.1 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|242398049|ref|YP_002993473.1| - 4.6e-13 49.1 0.1 1.4e-07 31.0 0.1 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Succ_DH_flav_C PF02910.20 gi|242398049|ref|YP_002993473.1| - 1e-11 44.9 0.1 2.8e-05 24.1 0.0 2.8 2 1 1 3 3 2 2 Fumarate reductase flavoprotein C-term HI0933_like PF03486.14 gi|242398049|ref|YP_002993473.1| - 7.1e-08 31.6 0.9 6e-07 28.5 1.0 2.3 2 1 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|242398049|ref|YP_002993473.1| - 5.8e-07 29.4 0.1 0.0092 15.6 0.0 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|242398049|ref|YP_002993473.1| - 5.9e-05 22.3 1.6 0.012 14.7 1.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|242398049|ref|YP_002993473.1| - 0.016 14.5 0.1 0.024 13.9 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|242398049|ref|YP_002993473.1| - 0.032 13.8 0.1 0.051 13.1 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|242398049|ref|YP_002993473.1| - 0.033 14.8 1.1 0.14 12.7 0.2 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|242398049|ref|YP_002993473.1| - 0.055 12.8 0.9 0.083 12.2 0.9 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_2 PF03446.15 gi|242398049|ref|YP_002993473.1| - 0.06 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|242398049|ref|YP_002993473.1| - 0.064 13.1 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|242398049|ref|YP_002993473.1| - 0.065 13.2 0.2 6.7 6.7 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|242398049|ref|YP_002993473.1| - 0.068 12.4 1.4 0.24 10.6 0.5 2.2 2 1 0 3 3 3 0 Thi4 family F420_oxidored PF03807.17 gi|242398049|ref|YP_002993473.1| - 0.093 13.3 0.2 0.21 12.2 0.2 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|242398049|ref|YP_002993473.1| - 0.099 12.3 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|242398049|ref|YP_002993473.1| - 0.16 11.2 0.1 0.27 10.5 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|242398049|ref|YP_002993473.1| - 0.19 12.0 0.5 0.43 10.9 0.5 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|242398049|ref|YP_002993473.1| - 0.2 10.5 0.6 0.55 9.0 0.4 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|242398049|ref|YP_002993473.1| - 0.28 10.4 1.9 0.26 10.5 0.3 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AIRS_C PF02769.22 gi|242398050|ref|YP_002993474.1| - 1.3e-60 204.1 2.9 1.3e-35 122.9 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|242398050|ref|YP_002993474.1| - 1e-47 160.7 0.2 7.6e-25 87.4 0.1 2.3 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|242398050|ref|YP_002993474.1| - 2.8e-07 30.9 1.5 4.7e-07 30.2 0.3 2.1 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain DUF3801 PF12687.7 gi|242398050|ref|YP_002993474.1| - 0.16 12.0 0.0 24 4.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3801) GATase_5 PF13507.6 gi|242398051|ref|YP_002993475.1| - 1.5e-50 171.7 0.0 1.9e-50 171.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|242398051|ref|YP_002993475.1| - 3.1e-09 36.9 0.0 6.2e-09 35.9 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|242398051|ref|YP_002993475.1| - 3.7e-09 36.6 0.0 5.8e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|242398051|ref|YP_002993475.1| - 8.2e-09 35.3 0.0 1.7e-08 34.3 0.0 1.5 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|242398051|ref|YP_002993475.1| - 2e-07 31.1 0.0 2.6e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|242398051|ref|YP_002993475.1| - 0.0002 21.2 0.0 0.00065 19.5 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 DUF4131 PF13567.6 gi|242398051|ref|YP_002993475.1| - 0.00087 19.0 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) PurS PF02700.14 gi|242398052|ref|YP_002993476.1| - 2.4e-25 88.5 0.0 2.7e-25 88.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase FrpC PF06901.12 gi|242398052|ref|YP_002993476.1| - 0.029 14.0 0.0 0.029 14.0 0.0 1.0 1 0 0 1 1 1 0 RTX iron-regulated protein FrpC DUF1297 PF06973.12 gi|242398053|ref|YP_002993477.1| - 6.8e-81 270.3 0.0 9.9e-81 269.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|242398053|ref|YP_002993477.1| - 3.5e-44 149.7 0.0 5.5e-44 149.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) GARS_A PF01071.19 gi|242398054|ref|YP_002993478.1| - 3.7e-60 203.0 0.1 5.8e-60 202.4 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|242398054|ref|YP_002993478.1| - 2.9e-27 95.3 0.2 1.4e-25 89.9 0.1 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|242398054|ref|YP_002993478.1| - 5.3e-14 52.3 1.4 1.3e-12 47.9 0.2 3.1 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|242398054|ref|YP_002993478.1| - 2.1e-05 24.7 0.0 6.8e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|242398054|ref|YP_002993478.1| - 4.9e-05 23.0 0.0 0.0001 21.9 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|242398054|ref|YP_002993478.1| - 0.00033 20.3 0.1 0.00067 19.3 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|242398054|ref|YP_002993478.1| - 0.00038 20.0 0.0 0.0017 17.9 0.1 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_2 PF08442.10 gi|242398054|ref|YP_002993478.1| - 0.00053 19.6 0.2 0.0014 18.2 0.2 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|242398054|ref|YP_002993478.1| - 0.0013 18.4 0.3 0.02 14.5 0.7 2.6 2 1 0 2 2 2 1 ATP-grasp domain Peripla_BP_6 PF13458.6 gi|242398054|ref|YP_002993478.1| - 0.028 14.1 0.0 0.073 12.7 0.0 1.8 1 1 0 1 1 1 0 Periplasmic binding protein ATPgrasp_ST PF14397.6 gi|242398054|ref|YP_002993478.1| - 0.051 12.8 0.0 0.18 11.1 0.1 1.8 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATP-grasp_5 PF13549.6 gi|242398054|ref|YP_002993478.1| - 0.059 12.8 0.4 0.15 11.5 0.1 1.8 2 0 0 2 2 2 0 ATP-grasp domain AAA_14 PF13173.6 gi|242398055|ref|YP_002993479.1| - 1.1e-05 25.4 0.0 2.6e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|242398055|ref|YP_002993479.1| - 0.01 16.1 0.2 0.38 11.0 0.2 2.5 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|242398055|ref|YP_002993479.1| - 0.012 15.4 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 gi|242398055|ref|YP_002993479.1| - 0.025 15.0 0.2 3.3 8.0 0.0 2.5 1 1 1 2 2 2 0 AAA ATPase domain AAA_24 PF13479.6 gi|242398055|ref|YP_002993479.1| - 0.13 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP-grasp PF02222.22 gi|242398056|ref|YP_002993480.1| - 2.8e-55 186.5 0.0 5.8e-55 185.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|242398056|ref|YP_002993480.1| - 3.1e-08 33.4 0.0 5.3e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 gi|242398056|ref|YP_002993480.1| - 3.4e-08 33.3 0.0 5.5e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus 2-Hacid_dh_C PF02826.19 gi|242398056|ref|YP_002993480.1| - 0.00038 19.9 0.0 0.00088 18.7 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GARS_A PF01071.19 gi|242398056|ref|YP_002993480.1| - 0.00081 19.2 0.0 0.002 17.9 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Epimerase PF01370.21 gi|242398056|ref|YP_002993480.1| - 0.005 16.3 0.0 0.0091 15.5 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ATP-grasp_3 PF02655.14 gi|242398056|ref|YP_002993480.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain Pyr_redox PF00070.27 gi|242398056|ref|YP_002993480.1| - 0.17 12.5 0.3 1.3 9.6 0.0 2.5 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase AIRS_C PF02769.22 gi|242398057|ref|YP_002993481.1| - 1.4e-25 90.2 0.0 3e-25 89.2 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|242398057|ref|YP_002993481.1| - 8.6e-19 68.0 1.1 1.4e-18 67.3 1.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF4478 PF14793.6 gi|242398057|ref|YP_002993481.1| - 0.097 12.6 0.0 2.1 8.3 0.0 2.3 2 0 0 2 2 2 0 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases SAICAR_synt PF01259.18 gi|242398058|ref|YP_002993482.1| - 1.3e-69 234.6 0.3 1.4e-69 234.5 0.3 1.0 1 0 0 1 1 1 1 SAICAR synthetase GATase_7 PF13537.6 gi|242398059|ref|YP_002993483.1| - 4.3e-19 68.6 0.0 6.7e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|242398059|ref|YP_002993483.1| - 3e-17 63.1 0.0 7.8e-17 61.7 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|242398059|ref|YP_002993483.1| - 1e-08 34.4 0.0 1.6e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|242398059|ref|YP_002993483.1| - 1.6e-08 34.2 0.0 3.4e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|242398059|ref|YP_002993483.1| - 0.045 13.2 0.2 0.15 11.5 0.0 1.8 2 0 0 2 2 2 0 Phosphoribosyl transferase GATase_2 PF00310.21 gi|242398059|ref|YP_002993483.1| - 0.13 11.0 0.0 9.2 4.8 0.0 2.6 3 0 0 3 3 3 0 Glutamine amidotransferases class-II Molybdopterin PF00384.22 gi|242398060|ref|YP_002993484.1| - 1.3e-89 301.2 0.0 1.5e-89 300.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|242398060|ref|YP_002993484.1| - 2.6e-21 75.7 0.0 4.6e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|242398060|ref|YP_002993484.1| - 7.7e-08 32.2 0.2 1.6e-07 31.2 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain HD PF01966.22 gi|242398061|ref|YP_002993485.1| - 9.1e-09 35.6 0.1 1.5e-08 34.9 0.1 1.4 1 0 0 1 1 1 1 HD domain DUF1935 PF09149.10 gi|242398061|ref|YP_002993485.1| - 0.16 12.4 0.2 0.49 10.8 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1935) DUF5616 PF18481.1 gi|242398062|ref|YP_002993486.1| - 2e-43 148.1 0.0 2.6e-43 147.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|242398062|ref|YP_002993486.1| - 6.7e-24 83.3 3.8 1.2e-23 82.5 3.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) DUF432 PF04254.13 gi|242398064|ref|YP_002993488.1| - 1.6e-24 86.4 0.0 2.4e-24 85.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.18 gi|242398065|ref|YP_002993489.1| - 2.6e-61 206.8 0.2 5e-61 205.9 0.2 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|242398065|ref|YP_002993489.1| - 1.5e-05 24.9 5.9 0.0012 18.7 1.9 3.4 3 1 0 3 3 3 2 Conserved TM helix DUF2530 PF10745.9 gi|242398065|ref|YP_002993489.1| - 0.41 10.9 2.6 1.9 8.8 0.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2530) DUF2062 PF09835.9 gi|242398065|ref|YP_002993489.1| - 4.3 7.2 10.1 15 5.4 3.9 2.5 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) MTS PF05175.14 gi|242398066|ref|YP_002993490.1| - 1.9e-14 53.5 0.0 3e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|242398066|ref|YP_002993490.1| - 3.7e-14 52.8 0.2 5.2e-14 52.3 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|242398066|ref|YP_002993490.1| - 3e-10 40.0 0.0 4.2e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|242398066|ref|YP_002993490.1| - 4.3e-10 39.6 0.0 5.6e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|242398066|ref|YP_002993490.1| - 2.6e-07 31.2 0.0 8e-07 29.7 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|242398066|ref|YP_002993490.1| - 8.8e-07 28.8 0.3 2.8e-06 27.1 0.3 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Met_10 PF02475.16 gi|242398066|ref|YP_002993490.1| - 2.7e-05 24.0 0.5 0.00014 21.7 0.1 1.8 1 1 0 2 2 2 1 Met-10+ like-protein Methyltransf_11 PF08241.12 gi|242398066|ref|YP_002993490.1| - 0.00011 22.8 0.0 0.00041 20.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain DNA_methylase PF00145.17 gi|242398066|ref|YP_002993490.1| - 0.00025 20.5 0.0 0.00047 19.6 0.0 1.4 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase DUF43 PF01861.16 gi|242398066|ref|YP_002993490.1| - 0.00061 19.1 0.0 0.00097 18.4 0.0 1.3 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_15 PF09445.10 gi|242398066|ref|YP_002993490.1| - 0.00086 18.9 0.0 0.0016 18.0 0.0 1.5 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.6 gi|242398066|ref|YP_002993490.1| - 0.0015 18.6 0.0 0.0018 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|242398066|ref|YP_002993490.1| - 0.0015 18.5 0.1 0.003 17.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|242398066|ref|YP_002993490.1| - 0.0016 17.5 0.1 0.0026 16.8 0.1 1.3 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase GidB PF02527.15 gi|242398066|ref|YP_002993490.1| - 0.003 16.9 0.1 0.0046 16.3 0.1 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G N6_Mtase PF02384.16 gi|242398066|ref|YP_002993490.1| - 0.0078 15.5 0.0 0.018 14.3 0.0 1.5 1 1 0 1 1 1 1 N-6 DNA Methylase Ubie_methyltran PF01209.18 gi|242398066|ref|YP_002993490.1| - 0.0092 15.3 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|242398066|ref|YP_002993490.1| - 0.022 14.4 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_12 PF08242.12 gi|242398066|ref|YP_002993490.1| - 0.023 15.4 0.0 0.048 14.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|242398066|ref|YP_002993490.1| - 0.047 13.4 0.1 0.066 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF3236 PF11576.8 gi|242398066|ref|YP_002993490.1| - 0.055 13.2 0.1 0.099 12.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3236) N6-adenineMlase PF10237.9 gi|242398066|ref|YP_002993490.1| - 0.059 13.2 1.3 0.2 11.4 1.3 1.7 1 1 1 2 2 2 0 Probable N6-adenine methyltransferase DUF4315 PF14193.6 gi|242398066|ref|YP_002993490.1| - 0.062 13.3 3.5 10 6.2 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4315) Methyltransf_16 PF10294.9 gi|242398066|ref|YP_002993490.1| - 0.081 12.7 0.1 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Lysine methyltransferase DOT1 PF08123.13 gi|242398066|ref|YP_002993490.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 ABC2_membrane PF01061.24 gi|242398067|ref|YP_002993491.1| - 1.5 8.2 18.8 3.6 6.9 18.8 1.6 1 1 0 1 1 1 0 ABC-2 type transporter Spore_YabQ PF09578.10 gi|242398067|ref|YP_002993491.1| - 8 6.8 16.8 0.76 10.0 4.3 2.2 1 1 1 2 2 2 0 Spore cortex protein YabQ (Spore_YabQ) Diphthamide_syn PF01866.17 gi|242398068|ref|YP_002993492.1| - 2.8e-77 260.1 0.0 3.5e-77 259.8 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF1847 PF08901.11 gi|242398068|ref|YP_002993492.1| - 0.00048 19.8 1.5 1.6 8.3 0.0 3.2 3 0 0 3 3 3 3 Protein of unknown function (DUF1847) Fe-ADH PF00465.19 gi|242398068|ref|YP_002993492.1| - 0.078 11.8 1.0 2.8 6.7 0.2 2.6 3 0 0 3 3 3 0 Iron-containing alcohol dehydrogenase UPF0180 PF03698.13 gi|242398068|ref|YP_002993492.1| - 0.14 12.4 0.0 19 5.5 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) DUF3887 PF13026.6 gi|242398069|ref|YP_002993493.1| - 1.3e-10 41.9 0.4 2e-10 41.3 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) YhfC PF10086.9 gi|242398069|ref|YP_002993493.1| - 1.5e-09 37.6 10.0 0.00017 21.1 0.1 2.2 1 1 1 2 2 2 2 YhfC intramembrane metalloprotease PadR PF03551.14 gi|242398070|ref|YP_002993494.1| - 5.5e-22 77.5 0.1 8e-22 77.0 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF505 PF04458.12 gi|242398070|ref|YP_002993494.1| - 1.4e-05 23.7 0.2 1.7e-05 23.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_34 PF13601.6 gi|242398070|ref|YP_002993494.1| - 0.00014 21.9 0.2 0.00032 20.8 0.2 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|242398070|ref|YP_002993494.1| - 0.0081 16.0 0.1 0.01 15.7 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix RTP PF02334.16 gi|242398070|ref|YP_002993494.1| - 0.016 15.9 0.2 0.026 15.2 0.2 1.4 1 1 0 1 1 1 0 Replication terminator protein DUF4364 PF14277.6 gi|242398070|ref|YP_002993494.1| - 0.032 14.0 0.1 0.072 12.8 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) B-block_TFIIIC PF04182.12 gi|242398070|ref|YP_002993494.1| - 0.054 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC FPRL1_inhibitor PF16104.5 gi|242398070|ref|YP_002993494.1| - 0.1 12.8 0.1 0.49 10.6 0.0 1.8 1 1 1 2 2 2 0 Formyl peptide receptor-like 1 inhibitory protein VASP_tetra PF08776.11 gi|242398070|ref|YP_002993494.1| - 5.4 6.7 10.0 27 4.4 5.0 2.6 2 0 0 2 2 2 0 VASP tetramerisation domain NUFIP1 PF10453.9 gi|242398071|ref|YP_002993495.1| - 0.053 13.4 4.4 0.086 12.7 4.4 1.3 1 0 0 1 1 1 0 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) DUF2950 PF11453.8 gi|242398071|ref|YP_002993495.1| - 0.12 11.6 0.3 0.13 11.4 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2950) tRNA-synt_His PF13393.6 gi|242398072|ref|YP_002993496.1| - 2.1e-64 217.8 0.0 2.7e-64 217.4 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|242398072|ref|YP_002993496.1| - 3.8e-17 62.2 3.4 3.8e-17 62.2 3.4 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|242398072|ref|YP_002993496.1| - 4e-15 56.2 0.0 8.9e-14 51.8 0.0 2.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|242398072|ref|YP_002993496.1| - 1.2e-07 31.1 0.3 4.9e-05 22.6 0.2 2.5 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|242398072|ref|YP_002993496.1| - 0.0061 16.1 0.0 0.026 14.0 0.0 2.0 2 1 0 2 2 2 1 tRNA synthetases class II core domain (F) ALS_ss_C PF10369.9 gi|242398072|ref|YP_002993496.1| - 0.055 13.7 0.2 7.8 6.8 0.1 2.7 1 1 1 2 2 2 0 Small subunit of acetolactate synthase MarC PF01914.17 gi|242398073|ref|YP_002993497.1| - 2.6e-30 105.3 22.0 3e-30 105.1 22.0 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein HKR_ArcB_TM PF18415.1 gi|242398073|ref|YP_002993497.1| - 2.7 8.8 13.2 4.4 8.2 0.6 3.4 2 1 1 3 3 3 0 Histidine kinase receptor ArcB trans-membrane domain Peptidase_M78 PF06114.13 gi|242398075|ref|YP_002993499.1| - 3.2e-19 69.1 0.1 2.1e-17 63.2 0.0 2.3 2 0 0 2 2 2 1 IrrE N-terminal-like domain HTH_3 PF01381.22 gi|242398075|ref|YP_002993499.1| - 7e-11 42.0 1.0 2.6e-08 33.8 0.3 2.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|242398075|ref|YP_002993499.1| - 8.4e-09 35.7 0.0 5.5e-08 33.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|242398075|ref|YP_002993499.1| - 2e-07 30.9 4.5 4.2e-07 29.9 0.1 3.3 4 0 0 4 4 4 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|242398075|ref|YP_002993499.1| - 0.00012 21.9 0.1 0.00038 20.3 0.1 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|242398075|ref|YP_002993499.1| - 0.00082 19.1 0.0 0.032 14.1 0.0 2.8 2 0 0 2 2 2 1 Homeodomain-like domain IF2_N PF04760.15 gi|242398075|ref|YP_002993499.1| - 0.001 18.9 1.0 0.13 12.1 0.1 2.7 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region HTH_AsnC-type PF13404.6 gi|242398075|ref|YP_002993499.1| - 0.0017 18.2 0.3 0.034 14.0 0.0 2.7 3 0 0 3 3 2 1 AsnC-type helix-turn-helix domain HTH_26 PF13443.6 gi|242398075|ref|YP_002993499.1| - 0.0017 18.8 0.0 0.039 14.4 0.0 2.6 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.12 gi|242398075|ref|YP_002993499.1| - 0.002 18.0 0.1 0.031 14.2 0.1 2.7 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|242398075|ref|YP_002993499.1| - 0.0083 15.7 0.2 0.087 12.4 0.0 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_Tnp_1 PF01527.20 gi|242398075|ref|YP_002993499.1| - 0.012 15.9 0.0 3.2 8.1 0.0 2.7 2 0 0 2 2 2 0 Transposase CENP-B_N PF04218.13 gi|242398075|ref|YP_002993499.1| - 0.021 14.4 0.1 0.47 10.1 0.1 2.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain HTH_17 PF12728.7 gi|242398075|ref|YP_002993499.1| - 0.031 14.5 0.9 0.71 10.1 0.0 3.3 3 0 0 3 3 2 0 Helix-turn-helix domain Death PF00531.22 gi|242398075|ref|YP_002993499.1| - 0.033 14.3 0.0 0.095 12.9 0.0 1.8 1 0 0 1 1 1 0 Death domain RHH_1 PF01402.21 gi|242398075|ref|YP_002993499.1| - 0.036 14.0 2.1 1 9.4 0.1 3.5 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family HTH_5 PF01022.20 gi|242398075|ref|YP_002993499.1| - 0.042 13.7 0.0 0.16 11.8 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|242398075|ref|YP_002993499.1| - 0.043 13.3 0.1 0.9 9.1 0.0 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 MerR_1 PF13411.6 gi|242398075|ref|YP_002993499.1| - 0.054 13.6 0.1 12 6.0 0.0 3.3 3 0 0 3 3 3 0 MerR HTH family regulatory protein MerR PF00376.23 gi|242398075|ref|YP_002993499.1| - 0.066 13.0 0.0 16 5.4 0.0 3.1 2 0 0 2 2 2 0 MerR family regulatory protein DUF3606 PF12244.8 gi|242398075|ref|YP_002993499.1| - 0.079 12.9 0.1 15 5.6 0.0 3.0 3 0 0 3 3 2 0 Protein of unknown function (DUF3606) Sigma70_r4_2 PF08281.12 gi|242398075|ref|YP_002993499.1| - 0.085 12.5 0.1 0.33 10.7 0.1 2.1 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.12 gi|242398075|ref|YP_002993499.1| - 0.09 12.6 0.0 2.8 7.8 0.0 2.7 2 0 0 2 2 2 0 HTH DNA binding domain HTH_29 PF13551.6 gi|242398075|ref|YP_002993499.1| - 0.091 12.8 0.1 4.3 7.4 0.0 3.0 2 1 1 3 3 3 0 Winged helix-turn helix UPF0175 PF03683.13 gi|242398075|ref|YP_002993499.1| - 0.092 12.5 0.5 0.5 10.1 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) DUF2623 PF11115.8 gi|242398075|ref|YP_002993499.1| - 0.12 12.5 0.0 0.65 10.1 0.0 2.2 3 0 0 3 3 2 0 Protein of unknown function (DUF2623) MarR PF01047.22 gi|242398075|ref|YP_002993499.1| - 0.13 12.2 0.0 1 9.3 0.0 2.4 3 0 0 3 3 3 0 MarR family DUF4411 PF14367.6 gi|242398076|ref|YP_002993500.1| - 6.9e-11 42.3 0.2 1.5e-10 41.2 0.2 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4411) TFX_C PF14601.6 gi|242398077|ref|YP_002993501.1| - 2.8e-23 81.7 0.1 4e-23 81.2 0.1 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|242398077|ref|YP_002993501.1| - 3.3e-08 32.9 1.2 6.8e-08 31.9 1.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|242398077|ref|YP_002993501.1| - 1.1e-07 31.3 1.3 1.8e-07 30.6 1.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|242398077|ref|YP_002993501.1| - 7.5e-06 25.5 0.5 7.5e-06 25.5 0.5 1.6 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|242398077|ref|YP_002993501.1| - 0.00056 19.6 0.1 0.0011 18.7 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.6 gi|242398077|ref|YP_002993501.1| - 0.0014 18.6 0.3 0.0036 17.2 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain KORA PF16509.5 gi|242398077|ref|YP_002993501.1| - 0.0018 18.5 0.5 0.0031 17.7 0.5 1.5 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor HTH_38 PF13936.6 gi|242398077|ref|YP_002993501.1| - 0.0026 17.5 0.1 0.0051 16.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|242398077|ref|YP_002993501.1| - 0.013 15.6 0.1 0.023 14.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|242398077|ref|YP_002993501.1| - 0.019 15.2 1.0 0.019 15.2 1.0 1.7 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_7 PF02796.15 gi|242398077|ref|YP_002993501.1| - 0.023 14.8 0.1 0.044 13.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase KorB PF08535.10 gi|242398077|ref|YP_002993501.1| - 0.024 14.7 0.0 0.05 13.6 0.0 1.6 1 1 0 1 1 1 0 KorB domain HTH_24 PF13412.6 gi|242398077|ref|YP_002993501.1| - 0.024 14.2 0.4 0.11 12.1 0.3 2.2 2 2 1 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 gi|242398077|ref|YP_002993501.1| - 0.031 14.3 0.2 0.064 13.3 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|242398077|ref|YP_002993501.1| - 0.034 14.2 0.1 0.054 13.5 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Pex14_N PF04695.13 gi|242398077|ref|YP_002993501.1| - 0.045 14.4 0.2 0.076 13.7 0.3 1.5 2 0 0 2 2 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region HTH_Crp_2 PF13545.6 gi|242398077|ref|YP_002993501.1| - 0.047 13.7 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|242398077|ref|YP_002993501.1| - 0.053 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_3 PF01381.22 gi|242398077|ref|YP_002993501.1| - 0.059 13.4 0.4 0.14 12.2 0.3 1.8 2 0 0 2 2 1 0 Helix-turn-helix MarR PF01047.22 gi|242398077|ref|YP_002993501.1| - 0.067 13.1 0.1 0.16 11.9 0.1 1.7 1 0 0 1 1 1 0 MarR family SAM_DrpA PF18255.1 gi|242398077|ref|YP_002993501.1| - 0.11 12.8 0.3 0.22 11.8 0.3 1.5 1 0 0 1 1 1 0 DNA processing protein A sterile alpha motif domain HTH_10 PF04967.12 gi|242398077|ref|YP_002993501.1| - 0.97 9.3 3.3 35 4.3 3.3 2.4 1 1 0 1 1 1 0 HTH DNA binding domain LrgB PF04172.16 gi|242398078|ref|YP_002993502.1| - 3.2e-74 249.1 14.8 3.6e-74 248.9 14.8 1.0 1 0 0 1 1 1 1 LrgB-like family AGTRAP PF06396.11 gi|242398078|ref|YP_002993502.1| - 0.042 13.6 0.7 0.042 13.6 0.7 1.8 2 0 0 2 2 2 0 Angiotensin II, type I receptor-associated protein (AGTRAP) TRAP-gamma PF07074.12 gi|242398078|ref|YP_002993502.1| - 0.54 9.8 4.1 0.63 9.6 0.8 2.3 1 1 2 3 3 3 0 Translocon-associated protein, gamma subunit (TRAP-gamma) Phage_r1t_holin PF16945.5 gi|242398078|ref|YP_002993502.1| - 0.91 9.8 5.8 0.53 10.5 1.1 2.7 3 0 0 3 3 3 0 Putative lactococcus lactis phage r1t holin FUSC_2 PF13515.6 gi|242398078|ref|YP_002993502.1| - 7.2 6.7 11.8 0.53 10.4 4.8 2.2 1 1 0 2 2 2 0 Fusaric acid resistance protein-like LrgA PF03788.14 gi|242398079|ref|YP_002993503.1| - 3.6e-31 107.0 7.1 4.2e-31 106.8 7.1 1.1 1 0 0 1 1 1 1 LrgA family CbiQ PF02361.16 gi|242398079|ref|YP_002993503.1| - 0.0019 17.8 2.7 0.0023 17.6 2.7 1.2 1 0 0 1 1 1 1 Cobalt transport protein Pox_A14 PF05767.12 gi|242398079|ref|YP_002993503.1| - 0.022 14.9 1.9 0.023 14.8 0.3 1.8 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 2HCT PF03390.15 gi|242398079|ref|YP_002993503.1| - 0.028 13.0 5.9 0.033 12.8 5.9 1.0 1 0 0 1 1 1 0 2-hydroxycarboxylate transporter family RanGAP1_C PF07834.11 gi|242398079|ref|YP_002993503.1| - 0.085 12.5 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 RanGAP1 C-terminal domain DUF5134 PF17197.4 gi|242398079|ref|YP_002993503.1| - 0.21 11.5 1.1 0.35 10.8 0.3 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5134) Ribonuc_L-PSP PF01042.21 gi|242398080|ref|YP_002993504.1| - 4.2e-45 152.7 0.1 4.7e-45 152.5 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP TAL_effector PF03377.13 gi|242398080|ref|YP_002993504.1| - 0.061 13.7 0.4 0.1 12.9 0.4 1.4 1 0 0 1 1 1 0 TAL effector repeat HAD_SAK_1 PF10307.9 gi|242398080|ref|YP_002993504.1| - 0.18 11.6 0.0 0.24 11.2 0.0 1.1 1 0 0 1 1 1 0 HAD domain family 1 in Swiss Army Knife RNA repair proteins DUF2666 PF10869.8 gi|242398081|ref|YP_002993505.1| - 1.8e-50 170.7 6.3 5.4e-37 127.0 0.8 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2666) DUF4846 PF16138.5 gi|242398081|ref|YP_002993505.1| - 0.033 13.7 0.0 0.054 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (4846) PDZ_4 PF17816.1 gi|242398081|ref|YP_002993505.1| - 0.038 14.4 0.0 0.3 11.5 0.0 2.3 1 1 0 2 2 2 0 PDZ domain zf-DBF PF07535.12 gi|242398081|ref|YP_002993505.1| - 0.13 12.4 0.1 3.9 7.7 0.0 2.4 2 0 0 2 2 2 0 DBF zinc finger HalOD1 PF18545.1 gi|242398081|ref|YP_002993505.1| - 0.15 12.4 0.0 0.56 10.5 0.0 1.9 2 0 0 2 2 2 0 Halobacterial output domain 1 Lon_C PF05362.13 gi|242398082|ref|YP_002993506.1| - 1.2e-35 123.0 3.8 2e-35 122.2 3.8 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|242398082|ref|YP_002993506.1| - 1.5e-25 90.0 0.0 1.6e-18 66.8 0.0 3.0 3 1 0 3 3 3 2 AAA domain Sigma54_activat PF00158.26 gi|242398082|ref|YP_002993506.1| - 2.1e-17 63.3 0.1 1.2e-10 41.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|242398082|ref|YP_002993506.1| - 1.3e-16 60.6 0.1 3.8e-09 36.2 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|242398082|ref|YP_002993506.1| - 3.6e-11 43.2 0.0 0.00025 21.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|242398082|ref|YP_002993506.1| - 9e-11 41.7 1.8 1.7e-10 40.8 0.9 2.1 2 0 0 2 2 1 1 Subunit ChlI of Mg-chelatase LAGLIDADG_3 PF14528.6 gi|242398082|ref|YP_002993506.1| - 5e-08 33.2 1.2 0.00015 22.0 0.1 3.6 3 1 1 4 4 2 2 LAGLIDADG-like domain AAA PF00004.29 gi|242398082|ref|YP_002993506.1| - 3.4e-07 30.8 0.0 0.074 13.5 0.0 3.2 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|242398082|ref|YP_002993506.1| - 3.7e-07 29.5 0.4 0.023 13.8 0.0 3.1 3 0 0 3 3 3 2 MCM P-loop domain RuvB_N PF05496.12 gi|242398082|ref|YP_002993506.1| - 5.7e-06 26.2 0.1 0.076 12.8 0.1 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|242398082|ref|YP_002993506.1| - 1.8e-05 25.0 0.0 0.0014 18.9 0.0 2.7 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|242398082|ref|YP_002993506.1| - 3.2e-05 24.1 0.0 0.24 11.5 0.0 2.8 2 0 0 2 2 2 2 Sigma-54 interaction domain Intein_splicing PF14890.6 gi|242398082|ref|YP_002993506.1| - 8.6e-05 22.5 0.2 0.00021 21.2 0.2 1.7 1 0 0 1 1 1 1 Intein splicing domain TIP49 PF06068.13 gi|242398082|ref|YP_002993506.1| - 0.00046 19.5 0.2 0.5 9.5 0.0 2.7 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_3 PF07726.11 gi|242398082|ref|YP_002993506.1| - 0.00055 19.8 0.1 0.39 10.6 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|242398082|ref|YP_002993506.1| - 0.00058 19.4 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_PrkA PF08298.11 gi|242398082|ref|YP_002993506.1| - 0.00077 18.5 0.9 0.12 11.3 0.0 3.1 3 0 0 3 3 3 1 PrkA AAA domain AAA_30 PF13604.6 gi|242398082|ref|YP_002993506.1| - 0.0011 18.7 0.1 0.069 12.9 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_19 PF13245.6 gi|242398082|ref|YP_002993506.1| - 0.002 18.5 0.0 1.8 8.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|242398082|ref|YP_002993506.1| - 0.0023 18.3 0.0 0.0097 16.3 0.0 2.1 2 0 0 2 2 1 1 AAA ATPase domain NACHT PF05729.12 gi|242398082|ref|YP_002993506.1| - 0.0084 16.0 0.0 0.023 14.6 0.0 1.8 1 0 0 1 1 1 1 NACHT domain S_4TM PF18159.1 gi|242398082|ref|YP_002993506.1| - 0.0088 15.4 0.3 0.034 13.5 0.0 2.0 2 0 0 2 2 2 1 SMODS-associating 4TM effector domain HTH_Tnp_1 PF01527.20 gi|242398082|ref|YP_002993506.1| - 0.031 14.6 0.1 0.12 12.6 0.1 2.1 1 0 0 1 1 1 0 Transposase PhoH PF02562.16 gi|242398082|ref|YP_002993506.1| - 0.043 13.3 0.0 0.13 11.7 0.0 1.8 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.27 gi|242398082|ref|YP_002993506.1| - 0.083 13.4 0.0 0.41 11.2 0.0 2.2 2 0 0 2 2 1 0 ABC transporter IstB_IS21 PF01695.17 gi|242398082|ref|YP_002993506.1| - 0.11 12.3 0.0 0.33 10.7 0.0 1.8 1 0 0 1 1 1 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|242398082|ref|YP_002993506.1| - 0.11 12.6 0.0 20 5.3 0.0 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase HTH_23 PF13384.6 gi|242398082|ref|YP_002993506.1| - 0.15 11.9 0.1 2.5 8.0 0.0 2.7 2 0 0 2 2 2 0 Homeodomain-like domain Ac81 PF05820.11 gi|242398082|ref|YP_002993506.1| - 0.16 11.5 0.9 0.29 10.7 0.9 1.3 1 0 0 1 1 1 0 Baculoviridae AC81 AAA_29 PF13555.6 gi|242398082|ref|YP_002993506.1| - 0.19 11.5 0.0 0.47 10.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3378 PF11858.8 gi|242398083|ref|YP_002993507.1| - 0.057 13.5 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3378) Glycos_transf_2 PF00535.26 gi|242398084|ref|YP_002993508.1| - 5.2e-32 111.0 0.0 7.6e-32 110.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|242398084|ref|YP_002993508.1| - 5.6e-29 101.7 0.0 6.7e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|242398084|ref|YP_002993508.1| - 1.2e-13 51.4 0.1 2.2e-13 50.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|242398084|ref|YP_002993508.1| - 3e-12 46.6 0.0 5.6e-12 45.7 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|242398084|ref|YP_002993508.1| - 3.9e-10 39.5 0.0 5.9e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|242398084|ref|YP_002993508.1| - 0.00014 20.7 0.0 0.38 9.3 0.0 2.5 3 0 0 3 3 3 2 Chitin synthase Glyco_tranf_2_4 PF13704.6 gi|242398084|ref|YP_002993508.1| - 0.014 15.9 0.0 0.026 15.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 PHO4 PF01384.20 gi|242398085|ref|YP_002993509.1| - 2.5e-53 181.3 32.6 1.6e-52 178.6 32.6 1.9 1 1 0 1 1 1 1 Phosphate transporter family DUF1689 PF07954.11 gi|242398085|ref|YP_002993509.1| - 0.1 13.0 1.6 0.51 10.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1689) TGT PF01702.18 gi|242398086|ref|YP_002993510.1| - 1.2e-77 261.4 0.0 1.6e-77 261.0 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|242398086|ref|YP_002993510.1| - 6e-33 113.0 1.2 6e-33 113.0 1.2 1.9 2 0 0 2 2 2 1 C1 domain of tRNA-guanine transglycosylase dimerisation TGT_C2 PF14810.6 gi|242398086|ref|YP_002993510.1| - 4.3e-22 78.0 0.0 1.9e-21 75.9 0.0 2.2 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|242398086|ref|YP_002993510.1| - 1.1e-15 57.3 0.1 3.2e-15 55.8 0.1 1.9 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|242398086|ref|YP_002993510.1| - 0.00023 21.4 0.1 0.045 14.0 0.0 2.7 2 0 0 2 2 2 1 UPF0113 PUA domain PUA_3 PF17785.1 gi|242398086|ref|YP_002993510.1| - 0.00047 19.9 0.1 0.058 13.2 0.0 3.4 3 0 0 3 3 3 1 PUA-like domain DUF87 PF01935.17 gi|242398087|ref|YP_002993511.1| - 2.1e-43 149.0 0.6 3.3e-43 148.4 0.6 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|242398087|ref|YP_002993511.1| - 5.1e-11 42.6 1.4 3.7e-10 39.8 1.1 2.5 2 0 0 2 2 2 1 HAS barrel domain DUF853 PF05872.12 gi|242398087|ref|YP_002993511.1| - 7e-08 31.5 0.2 4.1e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|242398087|ref|YP_002993511.1| - 0.0062 15.5 0.0 0.055 12.4 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.27 gi|242398087|ref|YP_002993511.1| - 0.075 13.6 0.0 0.16 12.5 0.0 1.7 1 1 0 1 1 1 0 ABC transporter T4SS-DNA_transf PF02534.14 gi|242398087|ref|YP_002993511.1| - 0.093 11.5 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer Metallophos PF00149.28 gi|242398088|ref|YP_002993512.1| - 4.8e-16 59.9 0.3 4.8e-16 59.9 0.3 2.0 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|242398088|ref|YP_002993512.1| - 1.8e-12 47.8 0.0 1.5e-11 44.7 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AAA_15 PF13175.6 gi|242398089|ref|YP_002993513.1| - 3.7e-11 43.3 22.8 3.7e-11 43.3 22.8 4.3 1 1 2 3 3 1 1 AAA ATPase domain SMC_N PF02463.19 gi|242398089|ref|YP_002993513.1| - 8.8e-09 35.1 0.3 8.8e-09 35.1 0.3 2.7 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|242398089|ref|YP_002993513.1| - 2.2e-07 31.0 31.2 6.4e-05 22.9 2.0 4.0 2 2 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 gi|242398089|ref|YP_002993513.1| - 3.2e-06 26.9 0.6 3.2e-06 26.9 0.6 3.9 4 2 0 5 5 5 1 AAA domain AAA_29 PF13555.6 gi|242398089|ref|YP_002993513.1| - 4.4e-06 26.3 0.0 7.8e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad50_zn_hook PF04423.14 gi|242398089|ref|YP_002993513.1| - 1.7e-05 24.5 4.3 1.7e-05 24.5 4.3 8.6 8 2 1 9 9 9 1 Rad50 zinc hook motif SbcCD_C PF13558.6 gi|242398089|ref|YP_002993513.1| - 0.0018 18.5 0.0 0.004 17.3 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|242398089|ref|YP_002993513.1| - 0.013 16.0 154.1 1.8e+04 -23.6 41.3 7.8 1 1 1 2 2 0 0 AAA domain AAA_16 PF13191.6 gi|242398089|ref|YP_002993513.1| - 0.016 15.6 1.7 0.16 12.4 0.0 3.2 3 0 0 3 3 3 0 AAA ATPase domain DUF3440 PF11922.8 gi|242398089|ref|YP_002993513.1| - 0.22 11.2 3.0 1.4 8.5 3.0 2.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3440) AAA_22 PF13401.6 gi|242398089|ref|YP_002993513.1| - 1.8 8.8 0.0 1.8 8.8 0.0 4.5 5 2 0 5 5 5 0 AAA domain Flagellin_N PF00669.20 gi|242398089|ref|YP_002993513.1| - 5 7.2 14.9 3.6 7.7 1.8 4.6 3 2 2 5 5 5 0 Bacterial flagellin N-terminal helical region NurA PF09376.10 gi|242398090|ref|YP_002993514.1| - 1.8e-34 119.5 2.8 3.1e-34 118.7 2.8 1.4 1 1 0 1 1 1 1 NurA domain Acetyltransf_1 PF00583.25 gi|242398091|ref|YP_002993515.1| - 2.6e-26 92.2 0.1 3e-26 91.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|242398091|ref|YP_002993515.1| - 1.1e-17 64.2 0.2 1.4e-17 63.9 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|242398091|ref|YP_002993515.1| - 1.3e-17 63.9 0.1 1.4e-17 63.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|242398091|ref|YP_002993515.1| - 2.2e-12 46.8 0.1 2.8e-12 46.4 0.1 1.1 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|242398091|ref|YP_002993515.1| - 3.8e-11 43.4 0.1 4.5e-11 43.1 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|242398091|ref|YP_002993515.1| - 5e-07 29.5 0.0 1.2e-06 28.3 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|242398091|ref|YP_002993515.1| - 6.8e-06 26.8 0.0 8.3e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|242398091|ref|YP_002993515.1| - 1.1e-05 25.6 0.1 1.5e-05 25.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|242398091|ref|YP_002993515.1| - 4.2e-05 23.6 0.0 0.0002 21.4 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|242398091|ref|YP_002993515.1| - 7e-05 22.9 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|242398091|ref|YP_002993515.1| - 8.7e-05 22.2 0.0 0.00011 21.9 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_15 PF17013.5 gi|242398091|ref|YP_002993515.1| - 0.015 14.8 0.0 0.031 13.7 0.0 1.5 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_18 PF18014.1 gi|242398091|ref|YP_002993515.1| - 0.13 12.1 0.1 0.38 10.6 0.1 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FlgO PF17680.1 gi|242398091|ref|YP_002993515.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 FlgO protein tRNA_int_endo PF01974.17 gi|242398092|ref|YP_002993516.1| - 1.7e-29 101.7 1.2 2.7e-29 101.0 1.2 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|242398092|ref|YP_002993516.1| - 4.5e-18 64.7 1.6 1e-17 63.6 1.4 1.7 2 0 0 2 2 2 1 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.10 gi|242398092|ref|YP_002993516.1| - 0.011 16.0 0.1 0.018 15.3 0.1 1.5 1 1 0 1 1 1 0 Sen15 protein Aminotran_1_2 PF00155.21 gi|242398093|ref|YP_002993517.1| - 2.2e-72 244.2 0.0 2.5e-72 244.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|242398093|ref|YP_002993517.1| - 7.9e-06 24.6 0.0 1.2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|242398093|ref|YP_002993517.1| - 4.8e-05 22.8 0.0 8e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|242398093|ref|YP_002993517.1| - 7.9e-05 21.8 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|242398093|ref|YP_002993517.1| - 0.001 18.5 0.0 0.015 14.6 0.0 2.2 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|242398093|ref|YP_002993517.1| - 0.0015 17.4 0.0 0.0022 16.8 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain YcaO PF02624.16 gi|242398093|ref|YP_002993517.1| - 0.1 11.8 0.0 0.6 9.3 0.0 2.0 2 0 0 2 2 2 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding Rep_fac_C PF08542.11 gi|242398094|ref|YP_002993518.1| - 3.3e-20 72.3 0.1 9.6e-20 70.8 0.1 1.9 1 0 0 1 1 1 1 Replication factor C C-terminal domain Intein_splicing PF14890.6 gi|242398094|ref|YP_002993518.1| - 2.6e-15 56.5 0.0 5.3e-15 55.5 0.0 1.5 1 0 0 1 1 1 1 Intein splicing domain DNA_pol3_delta2 PF13177.6 gi|242398094|ref|YP_002993518.1| - 1.5e-14 54.1 0.1 1.9e-10 40.7 0.1 2.4 2 0 0 2 2 2 2 DNA polymerase III, delta subunit AAA PF00004.29 gi|242398094|ref|YP_002993518.1| - 3.3e-14 53.4 0.0 1.4e-06 28.7 0.1 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|242398094|ref|YP_002993518.1| - 6.6e-09 35.7 0.1 2.8e-07 30.4 0.0 3.0 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain LAGLIDADG_3 PF14528.6 gi|242398094|ref|YP_002993518.1| - 9.1e-09 35.5 0.5 0.0064 16.8 0.0 2.8 2 0 0 2 2 2 2 LAGLIDADG-like domain AAA_16 PF13191.6 gi|242398094|ref|YP_002993518.1| - 2.8e-07 31.1 0.0 0.00015 22.2 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|242398094|ref|YP_002993518.1| - 2e-06 27.9 0.0 6.2e-06 26.3 0.0 1.8 1 0 0 1 1 1 1 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|242398094|ref|YP_002993518.1| - 4.9e-05 22.8 0.0 0.007 15.8 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_assoc_2 PF16193.5 gi|242398094|ref|YP_002993518.1| - 0.0001 22.5 1.4 0.00042 20.6 0.2 2.6 2 0 0 2 2 2 1 AAA C-terminal domain AAA_22 PF13401.6 gi|242398094|ref|YP_002993518.1| - 0.00019 21.7 0.0 0.49 10.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|242398094|ref|YP_002993518.1| - 0.00027 21.5 0.1 0.0069 16.9 0.0 2.9 3 0 0 3 3 2 1 AAA domain DNA_pol3_delta PF06144.13 gi|242398094|ref|YP_002993518.1| - 0.00028 20.7 0.2 0.0021 17.9 0.0 2.3 2 0 0 2 2 2 1 DNA polymerase III, delta subunit ResIII PF04851.15 gi|242398094|ref|YP_002993518.1| - 0.00048 20.2 0.0 0.0046 17.0 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Hom_end PF05204.14 gi|242398094|ref|YP_002993518.1| - 0.00072 19.7 0.0 0.16 12.1 0.0 2.5 2 0 0 2 2 2 1 Homing endonuclease AAA_25 PF13481.6 gi|242398094|ref|YP_002993518.1| - 0.016 14.8 0.2 0.086 12.4 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_7 PF12775.7 gi|242398094|ref|YP_002993518.1| - 0.019 14.5 0.0 0.047 13.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|242398094|ref|YP_002993518.1| - 0.022 14.7 0.0 0.59 10.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|242398094|ref|YP_002993518.1| - 0.028 13.5 0.0 0.056 12.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_11 PF13086.6 gi|242398094|ref|YP_002993518.1| - 0.04 13.7 0.0 0.083 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|242398094|ref|YP_002993518.1| - 0.043 13.0 0.0 0.13 11.4 0.0 1.7 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_33 PF13671.6 gi|242398094|ref|YP_002993518.1| - 0.046 13.9 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|242398094|ref|YP_002993518.1| - 0.13 12.5 0.0 0.38 11.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|242398094|ref|YP_002993518.1| - 0.14 12.0 0.0 12 5.7 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|242398094|ref|YP_002993518.1| - 0.18 11.5 0.0 4.6 6.9 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|242398095|ref|YP_002993519.1| - 5.4e-14 52.7 0.0 1.8e-13 51.1 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|242398095|ref|YP_002993519.1| - 3e-10 40.3 3.8 3.8e-10 40.0 0.1 2.8 2 2 1 3 3 3 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|242398095|ref|YP_002993519.1| - 3e-07 30.5 1.1 6.7e-07 29.4 0.0 2.2 3 0 0 3 3 2 1 AAA domain AAA_22 PF13401.6 gi|242398095|ref|YP_002993519.1| - 1.3e-05 25.5 0.1 0.0032 17.7 0.0 3.0 2 1 1 3 3 3 1 AAA domain RuvB_N PF05496.12 gi|242398095|ref|YP_002993519.1| - 1.3e-05 25.0 0.0 3e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|242398095|ref|YP_002993519.1| - 4.7e-05 23.4 0.0 0.00027 20.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|242398095|ref|YP_002993519.1| - 0.00019 21.8 0.0 0.0059 17.0 0.0 2.7 2 1 1 3 3 3 1 AAA ATPase domain AAA_25 PF13481.6 gi|242398095|ref|YP_002993519.1| - 0.00032 20.3 0.0 0.00097 18.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|242398095|ref|YP_002993519.1| - 0.00035 19.7 0.0 0.00088 18.4 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein PPV_E1_C PF00519.17 gi|242398095|ref|YP_002993519.1| - 0.00039 19.4 0.0 0.00065 18.7 0.0 1.3 1 0 0 1 1 1 1 Papillomavirus helicase Zeta_toxin PF06414.12 gi|242398095|ref|YP_002993519.1| - 0.00042 19.6 0.0 0.001 18.4 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin DUF815 PF05673.13 gi|242398095|ref|YP_002993519.1| - 0.00043 19.5 0.0 0.001 18.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DNA_pol3_delta PF06144.13 gi|242398095|ref|YP_002993519.1| - 0.0012 18.7 0.2 0.022 14.6 0.0 2.9 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA_24 PF13479.6 gi|242398095|ref|YP_002993519.1| - 0.0027 17.5 1.5 0.0034 17.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|242398095|ref|YP_002993519.1| - 0.0028 18.1 2.0 0.0075 16.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|242398095|ref|YP_002993519.1| - 0.0028 17.5 9.4 0.012 15.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|242398095|ref|YP_002993519.1| - 0.0028 18.0 0.1 0.01 16.2 0.1 2.0 1 0 0 1 1 1 1 AAA C-terminal domain AAA_33 PF13671.6 gi|242398095|ref|YP_002993519.1| - 0.0029 17.8 0.0 0.0076 16.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|242398095|ref|YP_002993519.1| - 0.0063 16.9 0.1 0.065 13.6 0.1 2.4 1 1 1 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|242398095|ref|YP_002993519.1| - 0.014 15.9 0.6 0.09 13.3 0.0 2.3 2 0 0 2 2 2 0 ABC transporter AAA_28 PF13521.6 gi|242398095|ref|YP_002993519.1| - 0.016 15.5 0.1 0.048 13.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|242398095|ref|YP_002993519.1| - 0.022 14.3 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|242398095|ref|YP_002993519.1| - 0.023 15.2 0.0 0.023 15.2 0.0 3.0 4 2 0 4 4 2 0 AAA domain SRP54 PF00448.22 gi|242398095|ref|YP_002993519.1| - 0.025 14.2 0.0 0.059 13.0 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|242398095|ref|YP_002993519.1| - 0.048 13.4 0.0 0.12 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|242398095|ref|YP_002993519.1| - 0.049 13.6 2.2 0.066 13.2 0.0 2.2 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit TsaE PF02367.17 gi|242398095|ref|YP_002993519.1| - 0.054 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_6 PF12774.7 gi|242398095|ref|YP_002993519.1| - 0.057 12.4 0.1 0.15 11.0 0.0 1.7 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region AAA_29 PF13555.6 gi|242398095|ref|YP_002993519.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Hydin_ADK PF17213.3 gi|242398095|ref|YP_002993519.1| - 0.73 10.1 0.0 0.73 10.1 0.0 2.1 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain DUF1840 PF08895.11 gi|242398095|ref|YP_002993519.1| - 4.8 7.6 8.8 32 4.9 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1840) Met_10 PF02475.16 gi|242398096|ref|YP_002993520.1| - 4.1e-38 131.1 0.6 6.9e-38 130.4 0.6 1.5 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|242398096|ref|YP_002993520.1| - 4.2e-08 32.9 4.3 1.4e-07 31.3 4.3 2.0 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Peptidase_C4 PF00863.19 gi|242398096|ref|YP_002993520.1| - 0.059 12.7 0.0 0.093 12.0 0.0 1.3 1 0 0 1 1 1 0 Peptidase family C4 MTS PF05175.14 gi|242398096|ref|YP_002993520.1| - 0.17 11.4 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|242398096|ref|YP_002993520.1| - 0.19 12.5 0.0 0.48 11.2 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain DUF835 PF05763.12 gi|242398097|ref|YP_002993521.1| - 9.3e-35 119.3 0.2 1.5e-34 118.7 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) MCU PF04678.13 gi|242398097|ref|YP_002993521.1| - 0.073 13.2 0.1 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 Mitochondrial calcium uniporter Radical_SAM PF04055.21 gi|242398098|ref|YP_002993522.1| - 7.8e-24 84.9 0.2 1.6e-23 84.0 0.2 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|242398098|ref|YP_002993522.1| - 7e-22 77.7 0.2 9.8e-22 77.2 0.2 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|242398098|ref|YP_002993522.1| - 0.00035 20.8 0.0 0.00077 19.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|242398098|ref|YP_002993522.1| - 0.0072 16.4 0.0 0.018 15.2 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain BSD PF03909.17 gi|242398098|ref|YP_002993522.1| - 0.009 16.0 0.1 0.017 15.1 0.1 1.4 1 0 0 1 1 1 1 BSD domain TrmB PF01978.19 gi|242398099|ref|YP_002993523.1| - 1.3e-05 25.0 0.4 0.00054 19.8 0.1 2.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4288 PF14119.6 gi|242398099|ref|YP_002993523.1| - 0.073 13.5 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4288) Cucumo_2B PF03263.13 gi|242398099|ref|YP_002993523.1| - 0.096 13.2 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 Cucumovirus protein 2B HLH PF00010.26 gi|242398099|ref|YP_002993523.1| - 0.11 12.5 0.0 2 8.4 0.1 2.8 2 1 0 2 2 2 0 Helix-loop-helix DNA-binding domain Syntaxin-6_N PF09177.11 gi|242398099|ref|YP_002993523.1| - 0.12 13.0 1.8 1.2 9.7 0.2 2.5 2 1 0 2 2 2 0 Syntaxin 6, N-terminal DUF402 PF04167.13 gi|242398100|ref|YP_002993524.1| - 3.2e-15 56.1 5.5 2.2e-14 53.4 3.0 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|242398100|ref|YP_002993524.1| - 1.5e-11 44.2 0.0 2.4e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family Rad51 PF08423.11 gi|242398101|ref|YP_002993525.1| - 2.4e-39 135.2 0.1 3.5e-39 134.6 0.1 1.2 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|242398101|ref|YP_002993525.1| - 5.3e-13 48.9 0.6 7.3e-13 48.4 0.6 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|242398101|ref|YP_002993525.1| - 1.3e-09 37.9 0.1 1.1e-08 34.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|242398101|ref|YP_002993525.1| - 1.4e-09 37.8 0.0 1.9e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|242398101|ref|YP_002993525.1| - 3.2e-08 33.5 0.1 4.5e-08 33.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|242398101|ref|YP_002993525.1| - 0.0012 19.4 0.1 0.0028 18.2 0.1 1.7 1 1 1 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|242398101|ref|YP_002993525.1| - 0.0078 15.6 2.3 0.5 9.7 0.2 2.1 1 1 1 2 2 2 2 DnaB-like helicase C terminal domain CobU PF02283.16 gi|242398101|ref|YP_002993525.1| - 0.027 14.0 0.4 0.15 11.6 0.4 1.9 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase DUF1296 PF06972.11 gi|242398101|ref|YP_002993525.1| - 0.054 13.6 0.4 4.9 7.4 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1296) AAA PF00004.29 gi|242398101|ref|YP_002993525.1| - 0.26 11.7 1.4 0.59 10.5 1.4 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Lactamase_B_3 PF13483.6 gi|242398102|ref|YP_002993526.1| - 6.6e-22 78.1 0.1 8.2e-22 77.8 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|242398102|ref|YP_002993526.1| - 1.8e-18 66.8 0.0 2.6e-18 66.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|242398102|ref|YP_002993526.1| - 1.1e-11 45.2 0.1 1.3e-11 44.9 0.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF1614 PF07758.11 gi|242398105|ref|YP_002993529.1| - 4.3e-59 199.3 9.7 4.9e-59 199.2 9.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) Pribosyltran_N PF13793.6 gi|242398106|ref|YP_002993530.1| - 6.2e-26 90.6 0.0 1.7e-22 79.5 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|242398106|ref|YP_002993530.1| - 1.1e-18 67.2 0.5 2.6e-17 62.8 0.3 2.3 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|242398106|ref|YP_002993530.1| - 2.3e-15 57.1 0.3 3.4e-15 56.6 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|242398106|ref|YP_002993530.1| - 4.2e-07 29.6 0.1 8.6e-07 28.6 0.1 1.5 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|242398106|ref|YP_002993530.1| - 0.011 15.2 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase EIIA-man PF03610.16 gi|242398106|ref|YP_002993530.1| - 0.073 13.3 0.2 2.9 8.2 0.0 2.8 3 0 0 3 3 3 0 PTS system fructose IIA component Acid_PPase PF12689.7 gi|242398107|ref|YP_002993531.1| - 3.5e-10 40.0 0.1 5.2e-10 39.4 0.1 1.3 1 0 0 1 1 1 1 Acid Phosphatase HAD_2 PF13419.6 gi|242398107|ref|YP_002993531.1| - 4.7e-08 33.3 0.8 3.1e-05 24.1 0.0 2.6 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|242398107|ref|YP_002993531.1| - 1.1e-05 25.3 0.9 1.4e-05 24.9 0.9 1.1 1 0 0 1 1 1 1 NLI interacting factor-like phosphatase HAD PF12710.7 gi|242398107|ref|YP_002993531.1| - 2.5e-05 24.8 0.7 0.0036 17.7 0.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|242398107|ref|YP_002993531.1| - 0.0023 17.5 2.1 0.012 15.1 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2608) Hydrolase PF00702.26 gi|242398107|ref|YP_002993531.1| - 0.0054 17.0 0.0 0.47 10.7 0.0 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase DUF1804 PF08822.11 gi|242398107|ref|YP_002993531.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1804) Sacchrp_dh_NADP PF03435.18 gi|242398107|ref|YP_002993531.1| - 0.22 11.8 0.0 0.35 11.1 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DUF366 PF04017.12 gi|242398108|ref|YP_002993532.1| - 1.8e-64 216.6 1.9 2e-64 216.4 1.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) tRNA-synt_1f PF01921.18 gi|242398112|ref|YP_002993536.1| - 2.6e-130 434.6 0.5 3.4e-130 434.2 0.5 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|242398112|ref|YP_002993536.1| - 5.9e-06 25.3 1.5 0.0081 14.9 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|242398112|ref|YP_002993536.1| - 0.00028 20.4 0.0 0.51 9.6 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.25 gi|242398112|ref|YP_002993536.1| - 0.00055 19.3 0.0 0.027 13.8 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (W and Y) HypA PF01155.19 gi|242398112|ref|YP_002993536.1| - 0.0048 16.9 0.1 0.01 15.8 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-LITAF-like PF10601.9 gi|242398112|ref|YP_002993536.1| - 0.058 13.7 0.5 15 5.9 0.2 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|242398112|ref|YP_002993536.1| - 0.077 13.0 3.7 0.16 12.0 3.7 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Phage_connect_1 PF05135.13 gi|242398112|ref|YP_002993536.1| - 0.082 13.4 0.2 0.16 12.5 0.2 1.4 1 0 0 1 1 1 0 Phage gp6-like head-tail connector protein DUF1195 PF06708.11 gi|242398112|ref|YP_002993536.1| - 0.19 11.5 3.1 0.6 9.9 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1195) zinc_ribbon_10 PF10058.9 gi|242398112|ref|YP_002993536.1| - 0.24 11.1 2.4 0.71 9.6 2.4 1.7 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein POR PF01558.18 gi|242398113|ref|YP_002993537.1| - 6.4e-34 117.6 0.0 7.4e-34 117.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fe_dep_repress PF01325.19 gi|242398114|ref|YP_002993538.1| - 3e-19 68.9 0.3 5.3e-19 68.2 0.3 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|242398114|ref|YP_002993538.1| - 1.5e-18 66.7 0.1 2.4e-18 66.0 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|242398114|ref|YP_002993538.1| - 2.9e-08 33.5 0.0 4.8e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|242398114|ref|YP_002993538.1| - 1.2e-06 28.3 0.4 1.8e-06 27.7 0.4 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|242398114|ref|YP_002993538.1| - 3.5e-06 26.9 0.0 6.3e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|242398114|ref|YP_002993538.1| - 3.6e-05 23.2 0.0 6.6e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|242398114|ref|YP_002993538.1| - 4.3e-05 23.3 0.0 0.0001 22.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|242398114|ref|YP_002993538.1| - 0.00032 21.0 0.0 0.00054 20.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator DUF4423 PF14394.6 gi|242398114|ref|YP_002993538.1| - 0.00065 19.5 0.1 0.00088 19.0 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) LexA_DNA_bind PF01726.16 gi|242398114|ref|YP_002993538.1| - 0.001 18.8 0.0 0.0042 16.8 0.0 2.1 2 1 0 2 2 2 1 LexA DNA binding domain TFIIE_alpha PF02002.17 gi|242398114|ref|YP_002993538.1| - 0.0011 18.8 2.7 0.0028 17.5 0.3 2.0 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_IclR PF09339.10 gi|242398114|ref|YP_002993538.1| - 0.0013 18.5 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_micro PF17007.5 gi|242398114|ref|YP_002993538.1| - 0.0013 17.6 0.8 0.0019 17.1 0.3 1.5 1 1 1 2 2 2 1 HTH-like HTH_Crp_2 PF13545.6 gi|242398114|ref|YP_002993538.1| - 0.0015 18.4 0.0 0.0025 17.7 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|242398114|ref|YP_002993538.1| - 0.0034 17.5 0.6 0.0059 16.7 0.6 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.16 gi|242398114|ref|YP_002993538.1| - 0.0092 16.3 0.6 0.056 13.8 0.1 2.0 2 0 0 2 2 2 1 Penicillinase repressor HTH_36 PF13730.6 gi|242398114|ref|YP_002993538.1| - 0.0097 15.8 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|242398114|ref|YP_002993538.1| - 0.013 15.4 0.1 0.029 14.3 0.1 1.6 1 0 0 1 1 1 0 HTH domain IF2_N PF04760.15 gi|242398114|ref|YP_002993538.1| - 0.015 15.1 0.1 0.054 13.3 0.0 2.0 2 0 0 2 2 1 0 Translation initiation factor IF-2, N-terminal region HTH_27 PF13463.6 gi|242398114|ref|YP_002993538.1| - 0.015 15.8 0.0 0.023 15.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|242398114|ref|YP_002993538.1| - 0.016 15.0 0.0 0.037 13.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.12 gi|242398114|ref|YP_002993538.1| - 0.017 14.9 0.0 0.38 10.6 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain Rio2_N PF09202.11 gi|242398114|ref|YP_002993538.1| - 0.025 14.8 0.3 0.24 11.6 0.1 2.0 2 0 0 2 2 2 0 Rio2, N-terminal Mnd1 PF03962.15 gi|242398114|ref|YP_002993538.1| - 0.043 14.1 0.4 0.24 11.7 0.0 2.3 2 1 0 2 2 2 0 Mnd1 HTH domain HTH_20 PF12840.7 gi|242398114|ref|YP_002993538.1| - 0.047 13.8 0.0 0.078 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain LPD22 PF18834.1 gi|242398114|ref|YP_002993538.1| - 0.054 13.7 0.0 3.5 7.9 0.0 2.1 2 0 0 2 2 2 0 Large polyvalent protein associated domain 22 GntR PF00392.21 gi|242398114|ref|YP_002993538.1| - 0.064 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|242398114|ref|YP_002993538.1| - 0.086 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 gi|242398114|ref|YP_002993538.1| - 0.1 12.8 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|242398114|ref|YP_002993538.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_CodY PF08222.11 gi|242398114|ref|YP_002993538.1| - 0.13 11.8 0.0 0.26 10.9 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain DUF4422 PF14393.6 gi|242398114|ref|YP_002993538.1| - 0.15 11.9 2.5 0.13 12.1 1.3 1.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4422) Xan_ur_permease PF00860.20 gi|242398115|ref|YP_002993539.1| - 5.6e-46 157.0 38.9 6.8e-46 156.7 38.9 1.1 1 0 0 1 1 1 1 Permease family malic PF00390.19 gi|242398116|ref|YP_002993540.1| - 3.6e-29 101.8 1.3 5.7e-27 94.7 1.3 2.5 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|242398116|ref|YP_002993540.1| - 1.2e-26 93.6 3.8 9.2e-26 90.6 3.8 2.2 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain Shikimate_DH PF01488.20 gi|242398116|ref|YP_002993540.1| - 0.00033 20.7 0.8 0.0017 18.5 1.0 2.2 3 1 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.21 gi|242398116|ref|YP_002993540.1| - 0.00078 19.2 0.4 0.0021 17.8 0.1 1.8 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FAD_binding_3 PF01494.19 gi|242398116|ref|YP_002993540.1| - 0.003 16.8 0.1 0.0045 16.3 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain ThiF PF00899.21 gi|242398116|ref|YP_002993540.1| - 0.0052 16.2 1.0 0.011 15.1 1.0 1.5 1 0 0 1 1 1 1 ThiF family Pyr_redox_3 PF13738.6 gi|242398116|ref|YP_002993540.1| - 0.0068 15.7 3.3 0.017 14.4 1.6 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|242398116|ref|YP_002993540.1| - 0.049 13.9 0.2 0.12 12.6 0.2 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|242398116|ref|YP_002993540.1| - 0.23 11.0 1.6 0.39 10.2 1.6 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase TP_methylase PF00590.20 gi|242398117|ref|YP_002993541.1| - 5.4e-21 75.5 0.0 6.8e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1788 PF08747.11 gi|242398117|ref|YP_002993541.1| - 0.0047 16.9 0.1 0.0099 15.9 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) KH_2 PF07650.17 gi|242398117|ref|YP_002993541.1| - 0.15 11.9 0.2 0.15 11.9 0.2 1.9 2 0 0 2 2 2 0 KH domain DUF43 PF01861.16 gi|242398119|ref|YP_002993543.1| - 1.3e-117 391.3 0.3 1.7e-117 390.9 0.3 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain N6-adenineMlase PF10237.9 gi|242398119|ref|YP_002993543.1| - 0.002 18.0 0.0 0.0029 17.4 0.0 1.3 1 0 0 1 1 1 1 Probable N6-adenine methyltransferase DUF1217 PF06748.12 gi|242398119|ref|YP_002993543.1| - 0.042 13.9 0.0 0.094 12.8 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1217) Methyltr_RsmB-F PF01189.17 gi|242398119|ref|YP_002993543.1| - 0.052 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|242398119|ref|YP_002993543.1| - 0.12 12.2 0.0 0.27 11.0 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain GidB PF02527.15 gi|242398119|ref|YP_002993543.1| - 0.17 11.2 0.0 0.33 10.2 0.0 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G FeS_assembly_P PF01883.19 gi|242398120|ref|YP_002993544.1| - 4.9e-22 77.9 0.1 6.4e-22 77.5 0.1 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein NifU PF01106.17 gi|242398120|ref|YP_002993544.1| - 0.011 15.9 0.2 0.078 13.1 0.1 2.1 1 1 1 2 2 2 0 NifU-like domain HMA PF00403.26 gi|242398120|ref|YP_002993544.1| - 0.41 11.1 2.2 1.1 9.8 0.1 2.6 2 2 0 2 2 2 0 Heavy-metal-associated domain Fer4_13 PF13370.6 gi|242398121|ref|YP_002993545.1| - 5.7e-19 68.4 7.3 6.4e-19 68.3 7.3 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|242398121|ref|YP_002993545.1| - 3e-16 59.9 8.4 3.4e-16 59.7 8.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|242398121|ref|YP_002993545.1| - 0.00068 19.4 8.7 0.0032 17.2 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_19 PF06902.11 gi|242398121|ref|YP_002993545.1| - 0.0014 18.7 2.5 0.0021 18.1 2.5 1.3 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_10 PF13237.6 gi|242398121|ref|YP_002993545.1| - 0.0068 16.5 4.0 0.011 15.8 4.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|242398121|ref|YP_002993545.1| - 0.014 15.5 7.6 0.045 13.9 7.8 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|242398121|ref|YP_002993545.1| - 0.051 13.7 0.6 0.051 13.7 0.6 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|242398121|ref|YP_002993545.1| - 0.13 12.8 4.3 1.1 9.9 0.3 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|242398122|ref|YP_002993546.1| - 6e-20 71.5 6.7 7.6e-20 71.2 6.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|242398122|ref|YP_002993546.1| - 1.4e-16 61.0 7.7 2.1e-16 60.4 7.7 1.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|242398122|ref|YP_002993546.1| - 1.9e-08 33.7 7.6 1.5e-06 27.8 5.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|242398122|ref|YP_002993546.1| - 2.9e-07 30.3 2.0 2.9e-07 30.3 2.0 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_19 PF06902.11 gi|242398122|ref|YP_002993546.1| - 2.7e-06 27.4 1.7 3.2e-06 27.1 1.7 1.1 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_4 PF12800.7 gi|242398122|ref|YP_002993546.1| - 2.7e-06 27.4 3.4 3.9e-06 26.9 0.9 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|242398122|ref|YP_002993546.1| - 3.4e-06 27.5 17.4 0.00079 20.0 2.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242398122|ref|YP_002993546.1| - 6.5e-06 25.9 2.8 6.5e-06 25.9 2.8 2.0 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|242398122|ref|YP_002993546.1| - 3.8e-05 23.7 6.6 8.5e-05 22.6 6.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|242398122|ref|YP_002993546.1| - 4.9e-05 23.4 14.5 0.0036 17.4 5.3 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|242398122|ref|YP_002993546.1| - 0.00014 21.9 7.2 0.00031 20.8 7.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|242398122|ref|YP_002993546.1| - 0.0042 17.5 4.9 0.0076 16.7 4.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|242398122|ref|YP_002993546.1| - 0.0083 16.6 3.0 0.017 15.7 3.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|242398122|ref|YP_002993546.1| - 0.022 15.7 8.0 0.32 11.9 5.5 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|242398122|ref|YP_002993546.1| - 0.052 14.4 2.5 0.052 14.4 2.5 1.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|242398122|ref|YP_002993546.1| - 0.14 13.2 9.0 0.61 11.1 4.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain QRPTase_C PF01729.19 gi|242398123|ref|YP_002993547.1| - 4.7e-27 94.8 0.0 6.6e-27 94.3 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|242398123|ref|YP_002993547.1| - 3.2e-07 30.8 0.0 1.2e-06 28.9 0.0 1.9 1 1 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|242398123|ref|YP_002993547.1| - 0.00013 22.0 0.0 0.00026 21.0 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Zn-ribbon_8 PF09723.10 gi|242398123|ref|YP_002993547.1| - 0.011 15.8 1.1 0.041 14.0 0.4 2.2 2 0 0 2 2 2 0 Zinc ribbon domain NIR_SIR_ferr PF03460.17 gi|242398123|ref|YP_002993547.1| - 0.031 14.1 0.0 0.092 12.6 0.0 1.7 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain NAPRTase_N PF17767.1 gi|242398123|ref|YP_002993547.1| - 0.11 12.9 0.0 1.5 9.2 0.0 2.2 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DNA_ligase_ZBD PF03119.16 gi|242398123|ref|YP_002993547.1| - 0.13 12.3 1.7 0.43 10.6 0.6 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PTPS PF01242.19 gi|242398124|ref|YP_002993548.1| - 2.5e-24 85.6 0.0 3e-24 85.3 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase tRNA-synt_1g PF09334.11 gi|242398126|ref|YP_002993550.1| - 1.1e-160 534.7 0.1 1.4e-160 534.4 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|242398126|ref|YP_002993550.1| - 3e-31 107.4 0.1 5.4e-31 106.6 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|242398126|ref|YP_002993550.1| - 1.9e-15 56.2 0.1 2e-08 33.0 0.1 3.5 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|242398126|ref|YP_002993550.1| - 4.6e-14 52.6 0.1 9.5e-14 51.6 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|242398126|ref|YP_002993550.1| - 8e-05 22.1 0.0 0.32 10.3 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.7 gi|242398126|ref|YP_002993550.1| - 0.049 13.7 4.5 0.092 12.8 4.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|242398126|ref|YP_002993550.1| - 2.6 7.6 11.3 17 5.0 1.2 3.3 2 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|242398126|ref|YP_002993550.1| - 4.2 7.2 9.6 6 6.7 0.3 3.4 3 0 0 3 3 3 0 zinc-ribbon domain TrmB PF01978.19 gi|242398127|ref|YP_002993551.1| - 1.7e-09 37.4 0.0 3.7e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|242398127|ref|YP_002993551.1| - 9.1e-08 31.5 0.0 2.1e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|242398127|ref|YP_002993551.1| - 1.5e-05 24.8 0.0 2.6e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|242398127|ref|YP_002993551.1| - 0.00026 21.1 0.3 0.0027 17.8 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|242398127|ref|YP_002993551.1| - 0.0009 19.5 0.0 0.0018 18.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|242398127|ref|YP_002993551.1| - 0.0025 17.7 0.0 0.0049 16.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|242398127|ref|YP_002993551.1| - 0.0076 16.0 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|242398127|ref|YP_002993551.1| - 0.012 16.1 0.0 0.024 15.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4897 PF16238.5 gi|242398127|ref|YP_002993551.1| - 0.015 15.1 0.2 0.028 14.3 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) HTH_AsnC-type PF13404.6 gi|242398127|ref|YP_002993551.1| - 0.1 12.5 0.1 0.2 11.5 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|242398127|ref|YP_002993551.1| - 0.11 12.4 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.6 gi|242398127|ref|YP_002993551.1| - 0.11 12.3 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain CcmH PF03918.14 gi|242398127|ref|YP_002993551.1| - 0.19 11.0 0.0 0.34 10.2 0.0 1.4 1 0 0 1 1 1 0 Cytochrome C biogenesis protein LPAM_1 PF08139.12 gi|242398127|ref|YP_002993551.1| - 9 7.0 9.6 1.1 9.9 2.0 2.8 2 1 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site YfdX PF10938.8 gi|242398128|ref|YP_002993552.1| - 0.0028 17.6 8.8 0.74 9.7 8.8 2.6 1 1 0 1 1 1 1 YfdX protein GARP PF16731.5 gi|242398128|ref|YP_002993552.1| - 0.013 15.2 3.9 0.2 11.3 0.2 2.6 1 1 1 2 2 2 0 Glutamic acid/alanine-rich protein of Trypanosoma PTS_IIA PF02255.16 gi|242398128|ref|YP_002993552.1| - 0.053 13.6 7.9 0.37 10.9 2.2 3.9 3 1 0 3 3 3 0 PTS system, Lactose/Cellobiose specific IIA subunit YtkA PF13115.6 gi|242398128|ref|YP_002993552.1| - 0.085 13.5 0.3 0.26 11.9 0.3 1.9 1 1 0 1 1 1 0 YtkA-like TPR_2 PF07719.17 gi|242398128|ref|YP_002993552.1| - 0.094 12.9 14.5 3.8 7.9 0.1 5.8 5 2 2 7 7 7 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|242398128|ref|YP_002993552.1| - 1.8 9.0 19.2 0.31 11.4 0.4 5.9 6 1 1 7 7 7 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|242398128|ref|YP_002993552.1| - 9.7 6.2 13.2 20 5.2 1.4 4.9 4 2 2 6 6 6 0 Tetratricopeptide repeat TauE PF01925.19 gi|242398129|ref|YP_002993553.1| - 3.5e-61 206.9 28.8 4e-61 206.7 28.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2705 PF10920.8 gi|242398129|ref|YP_002993553.1| - 0.013 14.8 0.6 0.013 14.8 0.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2705) YajC PF02699.15 gi|242398129|ref|YP_002993553.1| - 0.23 11.4 0.1 0.23 11.4 0.1 2.1 2 0 0 2 2 2 0 Preprotein translocase subunit Peptidase_M42 PF05343.14 gi|242398130|ref|YP_002993554.1| - 1.4e-88 296.7 0.2 1.6e-88 296.5 0.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|242398130|ref|YP_002993554.1| - 2.8e-11 43.5 0.1 1.3e-10 41.4 0.0 2.0 1 1 1 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|242398130|ref|YP_002993554.1| - 8.4e-05 22.4 0.0 0.0015 18.3 0.0 2.3 2 1 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.15 gi|242398130|ref|YP_002993554.1| - 0.00044 19.2 0.1 0.47 9.2 0.0 2.1 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) TBP PF00352.21 gi|242398131|ref|YP_002993555.1| - 2.4e-57 190.8 0.0 3.5e-28 97.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|242398131|ref|YP_002993555.1| - 3.9e-08 33.3 0.0 0.00012 22.2 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) AIRS_C PF02769.22 gi|242398131|ref|YP_002993555.1| - 0.057 13.5 0.0 1.7 8.7 0.0 2.1 2 0 0 2 2 2 0 AIR synthase related protein, C-terminal domain FAM209 PF15206.6 gi|242398132|ref|YP_002993556.1| - 0.0059 16.4 0.0 0.0068 16.2 0.0 1.2 1 0 0 1 1 1 1 FAM209 family MAGE PF01454.19 gi|242398132|ref|YP_002993556.1| - 0.02 14.6 0.3 0.024 14.3 0.3 1.1 1 0 0 1 1 1 0 MAGE family Lactamase_B_2 PF12706.7 gi|242398133|ref|YP_002993557.1| - 1.7e-08 34.2 0.0 9.7e-05 22.0 0.0 2.5 3 0 0 3 3 3 2 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|242398133|ref|YP_002993557.1| - 1.5e-05 24.9 0.0 0.00013 21.8 0.1 2.2 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|242398133|ref|YP_002993557.1| - 0.0001 22.4 1.1 0.00053 20.0 1.0 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|242398133|ref|YP_002993557.1| - 0.0037 17.2 0.0 0.14 12.0 0.0 2.7 3 0 0 3 3 3 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|242398133|ref|YP_002993557.1| - 0.1 11.7 0.1 0.19 10.8 0.1 1.3 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II ABC_tran PF00005.27 gi|242398134|ref|YP_002993558.1| - 1.3e-16 61.4 0.0 1.4e-16 61.3 0.0 1.0 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242398134|ref|YP_002993558.1| - 1.4e-05 25.1 0.0 1.4e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|242398134|ref|YP_002993558.1| - 0.00013 22.5 1.3 0.00025 21.6 0.7 1.6 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|242398134|ref|YP_002993558.1| - 0.00034 20.5 0.2 0.00035 20.4 0.2 1.1 1 0 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 gi|242398134|ref|YP_002993558.1| - 0.00051 20.0 0.1 0.0011 18.9 0.0 1.5 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|242398134|ref|YP_002993558.1| - 0.00067 20.1 0.0 0.00067 20.1 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|242398134|ref|YP_002993558.1| - 0.002 17.9 0.0 0.0028 17.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|242398134|ref|YP_002993558.1| - 0.002 18.0 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 gi|242398134|ref|YP_002993558.1| - 0.0022 18.5 0.0 0.0028 18.2 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|242398134|ref|YP_002993558.1| - 0.0027 18.0 0.0 0.0027 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|242398134|ref|YP_002993558.1| - 0.0037 17.2 0.0 0.005 16.8 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Thymidylate_kin PF02223.17 gi|242398134|ref|YP_002993558.1| - 0.0046 16.7 0.0 0.0057 16.4 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_22 PF13401.6 gi|242398134|ref|YP_002993558.1| - 0.0073 16.6 0.0 0.0079 16.5 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|242398134|ref|YP_002993558.1| - 0.0091 15.7 0.0 0.0091 15.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|242398134|ref|YP_002993558.1| - 0.011 16.1 0.0 0.011 16.1 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.15 gi|242398134|ref|YP_002993558.1| - 0.019 14.9 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_13 PF13166.6 gi|242398134|ref|YP_002993558.1| - 0.026 13.2 0.0 0.026 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|242398134|ref|YP_002993558.1| - 0.031 13.9 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SKI PF01202.22 gi|242398134|ref|YP_002993558.1| - 0.042 14.0 0.1 0.058 13.5 0.1 1.2 1 0 0 1 1 1 0 Shikimate kinase AAA_33 PF13671.6 gi|242398134|ref|YP_002993558.1| - 0.043 14.0 0.0 0.093 12.9 0.0 1.6 1 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|242398134|ref|YP_002993558.1| - 0.046 13.6 0.0 0.062 13.2 0.0 1.2 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|242398134|ref|YP_002993558.1| - 0.059 13.4 0.0 0.08 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Cytidylate_kin PF02224.18 gi|242398134|ref|YP_002993558.1| - 0.074 12.8 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Cytidylate kinase RuvB_N PF05496.12 gi|242398134|ref|YP_002993558.1| - 0.1 12.4 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|242398134|ref|YP_002993558.1| - 0.13 12.7 0.0 0.14 12.5 0.0 1.3 1 1 0 1 1 1 0 RNA helicase cobW PF02492.19 gi|242398134|ref|YP_002993558.1| - 0.15 11.7 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF4162 PF13732.6 gi|242398135|ref|YP_002993559.1| - 4.7e-09 36.9 1.1 7.6e-09 36.2 1.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|242398135|ref|YP_002993559.1| - 2.3e-06 27.7 0.0 3.8e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|242398135|ref|YP_002993559.1| - 8.4e-06 26.3 0.0 2.1e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 ABC transporter DUF2117 PF09890.9 gi|242398135|ref|YP_002993559.1| - 0.012 15.1 0.9 0.014 14.8 0.9 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2117) Cob_adeno_trans PF01923.18 gi|242398135|ref|YP_002993559.1| - 0.024 14.8 0.0 0.048 13.8 0.0 1.4 1 1 0 1 1 1 0 Cobalamin adenosyltransferase ILEI PF15711.5 gi|242398135|ref|YP_002993559.1| - 0.13 12.7 0.0 0.39 11.2 0.0 1.8 2 0 0 2 2 2 0 Interleukin-like EMT inducer ABC2_membrane_3 PF12698.7 gi|242398136|ref|YP_002993560.1| - 6e-06 25.6 0.3 6.9e-06 25.4 0.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|242398136|ref|YP_002993560.1| - 0.0016 17.9 0.1 0.0021 17.5 0.1 1.2 1 0 0 1 1 1 1 ABC-2 type transporter SBP_bac_3 PF00497.20 gi|242398136|ref|YP_002993560.1| - 0.11 11.8 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 ABC2_membrane_3 PF12698.7 gi|242398137|ref|YP_002993561.1| - 6.6e-18 64.9 15.1 7.8e-18 64.7 15.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|242398137|ref|YP_002993561.1| - 3.5e-17 62.5 16.9 3.5e-17 62.5 16.9 2.0 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|242398137|ref|YP_002993561.1| - 2.6e-08 33.5 11.8 3.3e-08 33.2 11.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|242398137|ref|YP_002993561.1| - 0.017 15.1 19.2 0.056 13.4 15.3 2.6 2 1 0 2 2 2 0 ABC-2 family transporter protein MARVEL PF01284.23 gi|242398137|ref|YP_002993561.1| - 9 6.3 13.4 2.2 8.3 8.9 2.1 2 1 0 2 2 2 0 Membrane-associating domain POR PF01558.18 gi|242398138|ref|YP_002993562.1| - 4.4e-40 137.6 0.2 5.1e-40 137.4 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF4159 PF13709.6 gi|242398138|ref|YP_002993562.1| - 0.13 11.6 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) FGGY_N PF00370.21 gi|242398138|ref|YP_002993562.1| - 0.19 11.3 0.0 0.4 10.2 0.0 1.5 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain TPP_enzyme_C PF02775.21 gi|242398139|ref|YP_002993563.1| - 3.1e-29 101.7 0.2 6.1e-29 100.8 0.2 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|242398139|ref|YP_002993563.1| - 2.1e-15 57.1 0.2 3.2e-15 56.5 0.2 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_7 PF12838.7 gi|242398139|ref|YP_002993563.1| - 1.7e-08 34.9 11.5 5.1e-07 30.2 11.2 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|242398139|ref|YP_002993563.1| - 3.2e-08 33.1 18.6 4.5e-06 26.2 2.6 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|242398139|ref|YP_002993563.1| - 1.3e-06 28.4 10.7 1.3e-06 28.4 10.7 2.0 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|242398139|ref|YP_002993563.1| - 1.5e-06 28.3 11.1 2.4e-06 27.6 10.2 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|242398139|ref|YP_002993563.1| - 4.4e-05 23.5 8.8 0.00042 20.4 9.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242398139|ref|YP_002993563.1| - 4.9e-05 23.2 2.5 4.9e-05 23.2 2.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|242398139|ref|YP_002993563.1| - 0.00024 21.1 17.5 0.005 16.9 2.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain DXP_synthase_N PF13292.6 gi|242398139|ref|YP_002993563.1| - 0.016 14.4 0.1 0.054 12.7 0.1 1.8 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Transket_pyr PF02779.24 gi|242398139|ref|YP_002993563.1| - 0.022 14.4 0.5 0.22 11.2 0.2 2.3 2 0 0 2 2 2 0 Transketolase, pyrimidine binding domain Fer4_13 PF13370.6 gi|242398139|ref|YP_002993563.1| - 0.077 13.6 12.5 0.34 11.5 1.7 3.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|242398139|ref|YP_002993563.1| - 0.1 13.5 12.7 0.24 12.4 2.0 3.4 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|242398139|ref|YP_002993563.1| - 0.28 11.9 4.8 18 6.1 0.7 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|242398139|ref|YP_002993563.1| - 2.1 8.9 14.0 2.4 8.7 1.8 2.9 2 1 1 3 3 2 0 4Fe-4S dicluster domain Succ_CoA_lig PF13607.6 gi|242398140|ref|YP_002993564.1| - 3.4e-58 195.4 2.4 1e-56 190.5 1.0 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|242398140|ref|YP_002993564.1| - 3.1e-29 101.8 0.2 3.6e-26 91.9 0.1 2.5 2 0 0 2 2 2 2 CoA binding domain CoA_binding PF02629.19 gi|242398140|ref|YP_002993564.1| - 7.9e-16 58.5 0.3 2.6e-15 56.9 0.3 2.0 1 0 0 1 1 1 1 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|242398140|ref|YP_002993564.1| - 0.026 14.5 0.5 0.058 13.4 0.1 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.22 gi|242398140|ref|YP_002993564.1| - 0.035 14.9 0.8 3.9 8.3 0.1 3.1 2 2 2 4 4 4 0 Oxidoreductase family, NAD-binding Rossmann fold Thymidylate_kin PF02223.17 gi|242398141|ref|YP_002993565.1| - 9.5e-52 175.4 0.0 1.1e-51 175.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|242398141|ref|YP_002993565.1| - 9.7e-07 29.2 0.0 2.1e-06 28.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|242398141|ref|YP_002993565.1| - 8.4e-06 25.8 0.2 0.18 11.6 0.1 2.6 2 1 0 2 2 2 2 Deoxynucleoside kinase AAA_22 PF13401.6 gi|242398141|ref|YP_002993565.1| - 0.00095 19.5 0.0 0.0028 17.9 0.0 1.8 1 1 1 2 2 2 1 AAA domain SKI PF01202.22 gi|242398141|ref|YP_002993565.1| - 0.0029 17.7 0.2 1 9.5 0.1 2.2 2 0 0 2 2 2 2 Shikimate kinase AAA_33 PF13671.6 gi|242398141|ref|YP_002993565.1| - 0.0039 17.3 0.0 0.0084 16.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain PPK2 PF03976.14 gi|242398141|ref|YP_002993565.1| - 0.0042 16.6 0.0 0.01 15.4 0.0 1.7 2 0 0 2 2 2 1 Polyphosphate kinase 2 (PPK2) SRP54 PF00448.22 gi|242398141|ref|YP_002993565.1| - 0.0056 16.3 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|242398141|ref|YP_002993565.1| - 0.012 16.1 0.0 0.046 14.3 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|242398141|ref|YP_002993565.1| - 0.013 16.0 0.1 0.038 14.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|242398141|ref|YP_002993565.1| - 0.013 15.4 0.3 0.18 11.7 0.0 2.4 2 1 1 3 3 3 0 Adenylylsulphate kinase KTI12 PF08433.10 gi|242398141|ref|YP_002993565.1| - 0.017 14.6 0.1 0.049 13.1 0.0 1.7 3 0 0 3 3 3 0 Chromatin associated protein KTI12 CbiA PF01656.23 gi|242398141|ref|YP_002993565.1| - 0.024 14.7 0.0 0.031 14.3 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|242398141|ref|YP_002993565.1| - 0.027 14.2 0.1 0.038 13.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain BBP1_C PF15272.6 gi|242398141|ref|YP_002993565.1| - 0.047 13.5 0.1 0.065 13.1 0.1 1.2 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal zf-C4H2 PF10146.9 gi|242398141|ref|YP_002993565.1| - 0.075 13.3 0.5 0.11 12.8 0.5 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein LytR_C PF13399.6 gi|242398141|ref|YP_002993565.1| - 0.088 13.8 0.0 0.15 13.1 0.0 1.4 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator MeaB PF03308.16 gi|242398141|ref|YP_002993565.1| - 0.12 11.3 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PGM_PMM_I PF02878.16 gi|242398142|ref|YP_002993566.1| - 1.5e-06 27.9 0.0 2.3e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NTP_transferase PF00483.23 gi|242398143|ref|YP_002993567.1| - 8.3e-52 176.2 0.0 1.2e-51 175.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|242398143|ref|YP_002993567.1| - 1.5e-17 62.5 9.5 1.3e-06 27.9 1.4 3.8 1 1 2 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|242398143|ref|YP_002993567.1| - 1.9e-10 41.3 0.0 2.8e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|242398143|ref|YP_002993567.1| - 0.0016 18.4 0.0 0.0032 17.4 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase DUF4954 PF16314.5 gi|242398143|ref|YP_002993567.1| - 0.0027 15.9 1.0 0.0045 15.2 1.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|242398143|ref|YP_002993567.1| - 0.012 14.6 0.1 0.4 9.6 0.1 2.2 2 0 0 2 2 2 0 L-fucokinase Hexapep_2 PF14602.6 gi|242398143|ref|YP_002993567.1| - 0.11 12.3 16.5 0.12 12.1 8.2 4.1 3 2 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase PEPCK_GTP PF00821.18 gi|242398144|ref|YP_002993568.1| - 5.9e-106 354.3 0.0 7.3e-106 354.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|242398144|ref|YP_002993568.1| - 1.1e-59 201.7 0.0 1.5e-59 201.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain MgtE PF01769.16 gi|242398146|ref|YP_002993570.1| - 4.1e-28 98.2 27.7 1.9e-19 70.3 7.4 3.1 3 0 0 3 3 3 3 Divalent cation transporter TrkA_C PF02080.21 gi|242398147|ref|YP_002993571.1| - 2.1e-13 49.9 0.0 4e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.19 gi|242398147|ref|YP_002993571.1| - 2.7e-13 50.2 3.4 4.9e-13 49.4 3.4 1.4 1 0 0 1 1 1 1 PhoU domain PhoU_div PF01865.16 gi|242398147|ref|YP_002993571.1| - 0.001 18.4 2.7 0.0013 18.1 2.7 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 TrkA_C PF02080.21 gi|242398148|ref|YP_002993572.1| - 3.7e-15 55.5 0.3 6.4e-15 54.7 0.3 1.4 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.19 gi|242398148|ref|YP_002993572.1| - 4.3e-09 36.7 5.6 7.3e-09 36.0 5.6 1.4 1 0 0 1 1 1 1 PhoU domain DUF3642 PF12182.8 gi|242398148|ref|YP_002993572.1| - 0.068 13.5 0.1 10 6.5 0.0 2.3 1 1 0 2 2 2 0 Bacterial lipoprotein Metallophos PF00149.28 gi|242398150|ref|YP_002993574.1| - 4.1e-29 102.5 9.0 2.7e-20 73.7 4.0 2.4 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|242398150|ref|YP_002993574.1| - 2.5e-23 83.1 0.1 1.4e-12 48.1 0.1 2.5 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|242398150|ref|YP_002993574.1| - 0.00011 21.6 0.8 0.9 8.8 0.0 3.4 3 0 0 3 3 3 2 Metallophosphoesterase, calcineurin superfamily PhoD PF09423.10 gi|242398150|ref|YP_002993574.1| - 0.0092 15.0 0.0 3.4 6.6 0.0 3.0 3 0 0 3 3 3 2 PhoD-like phosphatase CBS PF00571.28 gi|242398151|ref|YP_002993575.1| - 2.9e-28 98.1 4.7 9.7e-14 51.6 0.2 2.1 2 0 0 2 2 2 2 CBS domain ATP-cone PF03477.16 gi|242398152|ref|YP_002993576.1| - 7.4e-09 36.1 1.6 1.9e-08 34.7 0.1 2.4 2 1 1 3 3 2 1 ATP cone domain AAA_18 PF13238.6 gi|242398152|ref|YP_002993576.1| - 1e-05 26.1 0.0 2.3e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|242398152|ref|YP_002993576.1| - 1.9e-05 25.0 0.1 0.00019 21.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|242398152|ref|YP_002993576.1| - 2.1e-05 24.7 0.0 0.00019 21.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|242398152|ref|YP_002993576.1| - 6e-05 22.4 0.0 0.00018 20.8 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.6 gi|242398152|ref|YP_002993576.1| - 0.0055 17.1 0.0 0.011 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain DUF1533 PF07550.11 gi|242398152|ref|YP_002993576.1| - 0.0073 16.2 0.0 0.017 15.0 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1533) AAA_5 PF07728.14 gi|242398152|ref|YP_002993576.1| - 0.01 15.8 0.5 0.15 12.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|242398152|ref|YP_002993576.1| - 0.019 14.9 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_17 PF13207.6 gi|242398152|ref|YP_002993576.1| - 0.022 15.2 0.0 0.067 13.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|242398152|ref|YP_002993576.1| - 0.032 13.8 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|242398152|ref|YP_002993576.1| - 0.032 14.0 0.8 0.072 12.8 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|242398152|ref|YP_002993576.1| - 0.036 14.4 0.1 0.12 12.7 0.0 1.9 2 0 0 2 2 1 0 AAA domain Cytidylate_kin2 PF13189.6 gi|242398152|ref|YP_002993576.1| - 0.047 13.8 0.1 0.083 13.0 0.1 1.7 1 1 0 1 1 1 0 Cytidylate kinase-like family NACHT PF05729.12 gi|242398152|ref|YP_002993576.1| - 0.057 13.3 0.6 0.3 11.0 0.3 2.2 2 1 1 3 3 3 0 NACHT domain ParA PF10609.9 gi|242398152|ref|YP_002993576.1| - 0.059 12.8 0.6 0.14 11.6 0.1 1.8 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase T2SSE PF00437.20 gi|242398152|ref|YP_002993576.1| - 0.066 12.3 1.2 0.11 11.5 0.1 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|242398152|ref|YP_002993576.1| - 0.067 13.6 0.0 0.17 12.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase GTP_cyclohydro2 PF00925.20 gi|242398152|ref|YP_002993576.1| - 0.076 12.6 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 GTP cyclohydrolase II DnaB_C PF03796.15 gi|242398152|ref|YP_002993576.1| - 0.085 12.2 0.2 10 5.3 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain CbiA PF01656.23 gi|242398152|ref|YP_002993576.1| - 0.12 12.4 3.9 0.051 13.6 1.0 1.9 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain TsaE PF02367.17 gi|242398152|ref|YP_002993576.1| - 0.12 12.3 0.8 0.98 9.4 0.0 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_29 PF13555.6 gi|242398152|ref|YP_002993576.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4974 PF16344.5 gi|242398153|ref|YP_002993577.1| - 0.048 13.7 0.1 0.31 11.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4974) Glyco_tran_WecB PF03808.13 gi|242398153|ref|YP_002993577.1| - 0.19 11.7 0.0 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family SBP_bac_11 PF13531.6 gi|242398154|ref|YP_002993578.1| - 8.4e-33 114.0 0.0 1.1e-32 113.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|242398154|ref|YP_002993578.1| - 9e-10 39.0 0.0 1.7e-09 38.1 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|242398155|ref|YP_002993579.1| - 2.5e-22 79.5 12.2 2.5e-22 79.5 12.2 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4191 PF13829.6 gi|242398155|ref|YP_002993579.1| - 5.1 6.4 6.9 0.65 9.3 1.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) ABC_tran PF00005.27 gi|242398156|ref|YP_002993580.1| - 1.3e-32 113.2 0.0 2.3e-32 112.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|242398156|ref|YP_002993580.1| - 8.5e-16 58.0 0.0 1.5e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.10 gi|242398156|ref|YP_002993580.1| - 3.5e-10 39.9 0.0 3.3e-09 36.8 0.0 2.2 2 0 0 2 2 2 1 TOBE domain AAA_29 PF13555.6 gi|242398156|ref|YP_002993580.1| - 7.8e-07 28.7 0.0 1.4e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|242398156|ref|YP_002993580.1| - 0.0002 21.3 3.3 0.093 12.5 0.3 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|242398156|ref|YP_002993580.1| - 0.0011 19.5 0.6 0.0028 18.2 0.1 1.8 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|242398156|ref|YP_002993580.1| - 0.0011 19.1 0.1 0.026 14.8 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|242398156|ref|YP_002993580.1| - 0.0047 16.4 0.0 0.064 12.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|242398156|ref|YP_002993580.1| - 0.013 15.9 0.0 0.021 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain OB_MalK PF17912.1 gi|242398156|ref|YP_002993580.1| - 0.031 15.1 0.6 0.18 12.6 0.7 2.3 2 0 0 2 2 1 0 MalK OB fold domain AAA_22 PF13401.6 gi|242398156|ref|YP_002993580.1| - 0.048 13.9 0.0 0.13 12.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|242398156|ref|YP_002993580.1| - 0.081 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 gi|242398156|ref|YP_002993580.1| - 0.099 12.4 0.0 0.32 10.7 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_27 PF13514.6 gi|242398156|ref|YP_002993580.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|242398156|ref|YP_002993580.1| - 0.15 12.1 0.0 0.41 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Trp_Tyr_perm PF03222.13 gi|242398157|ref|YP_002993581.1| - 6.1e-20 71.6 13.2 7.1e-20 71.4 13.2 1.1 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 gi|242398157|ref|YP_002993581.1| - 1.8e-07 30.3 10.8 2.1e-07 30.0 10.8 1.1 1 0 0 1 1 1 1 Transmembrane amino acid transporter protein AA_permease PF00324.21 gi|242398157|ref|YP_002993581.1| - 1.1e-06 27.6 15.5 1.3e-06 27.3 15.5 1.1 1 0 0 1 1 1 1 Amino acid permease CstA PF02554.14 gi|242398157|ref|YP_002993581.1| - 7.7e-05 21.7 6.1 9.1e-05 21.5 6.1 1.1 1 0 0 1 1 1 1 Carbon starvation protein CstA Nramp PF01566.18 gi|242398157|ref|YP_002993581.1| - 0.0023 16.9 7.8 0.0027 16.7 7.5 1.3 1 1 0 1 1 1 1 Natural resistance-associated macrophage protein EbsA PF17255.2 gi|242398157|ref|YP_002993581.1| - 0.022 15.1 1.1 0.049 14.0 1.1 1.5 1 0 0 1 1 1 0 EbsA-like protein DEAD_assoc PF08494.11 gi|242398158|ref|YP_002993582.1| - 4.5e-56 189.7 0.1 8.5e-56 188.8 0.1 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|242398158|ref|YP_002993582.1| - 1.5e-28 99.8 0.2 2.7e-27 95.7 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|242398158|ref|YP_002993582.1| - 1.3e-16 60.9 0.1 4.9e-16 59.1 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|242398158|ref|YP_002993582.1| - 2.7e-11 43.7 0.0 1.2e-10 41.7 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|242398158|ref|YP_002993582.1| - 0.019 13.7 0.0 0.043 12.5 0.0 1.6 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_19 PF13245.6 gi|242398158|ref|YP_002993582.1| - 0.043 14.1 0.0 0.84 10.0 0.0 2.6 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|242398158|ref|YP_002993582.1| - 0.045 12.8 0.2 0.36 9.9 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF1424 PF07232.11 gi|242398158|ref|YP_002993582.1| - 0.064 12.2 0.1 0.17 10.8 0.0 1.7 2 0 0 2 2 2 0 Putative rep protein (DUF1424) PQQ_2 PF13360.6 gi|242398160|ref|YP_002993584.1| - 1.4e-06 28.1 0.7 4.2e-05 23.2 0.2 2.1 1 1 1 2 2 2 2 PQQ-like domain DUF2117 PF09890.9 gi|242398160|ref|YP_002993584.1| - 0.0038 16.7 0.0 0.0055 16.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) EF-hand_6 PF13405.6 gi|242398161|ref|YP_002993585.1| - 1.3 9.1 3.2 2.2 8.4 2.5 1.7 2 0 0 2 2 2 0 EF-hand domain Peptidase_S9 PF00326.21 gi|242398162|ref|YP_002993586.1| - 5.7e-56 189.4 0.0 7.9e-56 188.9 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.15 gi|242398162|ref|YP_002993586.1| - 1.2e-23 83.7 0.0 2.1e-23 82.8 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Hydrolase_4 PF12146.8 gi|242398162|ref|YP_002993586.1| - 0.0016 17.8 0.0 0.014 14.7 0.0 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_3 PF07859.13 gi|242398162|ref|YP_002993586.1| - 0.024 14.5 0.0 0.15 11.9 0.0 1.9 1 1 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 gi|242398162|ref|YP_002993586.1| - 0.056 13.1 0.0 1.1 8.8 0.0 2.2 2 0 0 2 2 2 0 alpha/beta hydrolase fold ATC_hydrolase PF14196.6 gi|242398163|ref|YP_002993587.1| - 1.4e-22 81.1 0.0 1.6e-22 80.9 0.0 1.0 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase DUF4097 PF13349.6 gi|242398164|ref|YP_002993588.1| - 1.5e-10 40.9 8.7 6.5e-10 38.8 5.1 2.2 1 1 1 2 2 2 2 Putative adhesin Bactofilin PF04519.13 gi|242398164|ref|YP_002993588.1| - 0.0051 17.1 15.6 0.0051 17.1 8.0 3.5 2 1 2 4 4 4 1 Polymer-forming cytoskeletal DUF2154 PF09922.9 gi|242398164|ref|YP_002993588.1| - 0.31 10.9 3.7 0.64 9.9 0.1 2.6 2 1 0 3 3 3 0 Cell wall-active antibiotics response 4TMS YvqF CPBP PF02517.16 gi|242398165|ref|YP_002993589.1| - 1.4e-09 38.2 0.5 1.4e-09 38.2 0.5 1.9 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease FKBP_C PF00254.28 gi|242398166|ref|YP_002993590.1| - 1.7e-17 63.5 0.0 4.3e-17 62.2 0.0 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|242398166|ref|YP_002993590.1| - 6.9e-07 29.3 2.0 1.4e-06 28.3 0.8 2.2 2 0 0 2 2 2 1 FKBP26_C-terminal tRNA-synt_1e PF01406.19 gi|242398167|ref|YP_002993591.1| - 7.9e-138 458.9 0.0 1.3e-137 458.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|242398167|ref|YP_002993591.1| - 4e-22 78.5 1.1 5.1e-11 42.0 0.2 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|242398167|ref|YP_002993591.1| - 1.4e-15 57.5 0.7 5.9e-15 55.5 0.2 2.3 1 1 1 2 2 2 1 DALR domain tRNA-synt_1 PF00133.22 gi|242398167|ref|YP_002993591.1| - 2e-09 36.3 0.5 2.4e-06 26.1 0.0 3.1 2 1 1 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|242398167|ref|YP_002993591.1| - 1.5e-08 33.9 3.6 2.6e-06 26.6 0.0 3.0 2 1 1 3 3 3 2 tRNA synthetases class I (K) NleF_casp_inhib PF16809.5 gi|242398167|ref|YP_002993591.1| - 0.17 11.8 1.8 0.27 11.1 0.2 2.2 2 1 0 2 2 2 0 NleF caspase inhibitor EntA_Immun PF08951.10 gi|242398167|ref|YP_002993591.1| - 1.4 9.4 5.2 0.45 10.9 0.1 2.8 3 1 0 3 3 3 0 Enterocin A Immunity CdvA PF18822.1 gi|242398167|ref|YP_002993591.1| - 1.4 8.7 11.9 3.2 7.6 0.2 3.6 4 0 0 4 4 4 0 CdvA-like coiled-coil domain Peptidase_M20 PF01546.28 gi|242398168|ref|YP_002993592.1| - 7.3e-33 114.0 0.0 9.6e-33 113.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|242398168|ref|YP_002993592.1| - 1.9e-05 24.4 0.0 0.00027 20.7 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|242398168|ref|YP_002993592.1| - 0.00013 21.1 0.0 0.0038 16.3 0.0 2.7 3 0 0 3 3 3 1 M42 glutamyl aminopeptidase Aconitase_C PF00694.19 gi|242398168|ref|YP_002993592.1| - 0.06 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Aconitase C-terminal domain Pribosyltran PF00156.27 gi|242398169|ref|YP_002993593.1| - 8.4e-20 70.9 0.0 1.4e-19 70.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain ZnuA PF01297.17 gi|242398171|ref|YP_002993595.1| - 1.3e-28 100.1 2.0 1.6e-28 99.9 2.0 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic DUF4618 PF15397.6 gi|242398171|ref|YP_002993595.1| - 0.00034 20.1 0.0 0.00062 19.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) BPD_transp_2 PF02653.16 gi|242398172|ref|YP_002993596.1| - 5.6e-39 133.9 31.3 7.1e-39 133.6 31.3 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Gly-zipper_Omp PF13488.6 gi|242398172|ref|YP_002993596.1| - 1.9 8.5 7.1 0.29 11.1 0.5 2.9 3 0 0 3 3 3 0 Glycine zipper BPD_transp_2 PF02653.16 gi|242398173|ref|YP_002993597.1| - 1e-40 139.6 31.4 1e-40 139.6 31.4 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|242398174|ref|YP_002993598.1| - 7.8e-46 156.0 0.1 1.3e-26 93.8 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|242398174|ref|YP_002993598.1| - 1.7e-08 34.6 0.1 0.0014 18.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Bac_DnaA PF00308.18 gi|242398174|ref|YP_002993598.1| - 0.00062 19.7 3.6 0.0011 18.8 0.1 3.0 4 0 0 4 4 4 1 Bacterial dnaA protein AAA_29 PF13555.6 gi|242398174|ref|YP_002993598.1| - 0.0016 18.1 1.4 0.027 14.2 0.2 2.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|242398174|ref|YP_002993598.1| - 0.009 15.7 0.1 0.052 13.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|242398174|ref|YP_002993598.1| - 0.023 14.4 0.5 0.16 11.6 0.1 2.0 1 1 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|242398174|ref|YP_002993598.1| - 0.024 15.1 0.6 0.024 15.1 0.6 2.0 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|242398174|ref|YP_002993598.1| - 0.036 14.0 2.1 0.61 10.0 0.0 3.3 4 0 0 4 4 4 0 RsgA GTPase ArlS_N PF18719.1 gi|242398174|ref|YP_002993598.1| - 0.066 13.4 1.0 4.3 7.6 0.1 2.4 2 0 0 2 2 2 0 ArlS sensor domain AAA_27 PF13514.6 gi|242398174|ref|YP_002993598.1| - 0.15 11.7 0.1 0.28 10.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|242398174|ref|YP_002993598.1| - 0.21 11.9 0.8 2.3 8.5 0.6 2.6 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|242398174|ref|YP_002993598.1| - 0.25 11.1 4.9 33 4.1 4.9 3.0 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|242398174|ref|YP_002993598.1| - 0.59 10.6 2.5 2.7 8.4 0.7 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|242398174|ref|YP_002993598.1| - 0.85 9.0 5.5 10 5.5 0.1 3.2 4 0 0 4 4 4 0 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.9 gi|242398174|ref|YP_002993598.1| - 2.1 8.1 5.0 5.6 6.7 0.2 3.5 4 1 1 5 5 5 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|242398174|ref|YP_002993598.1| - 2.6 7.6 4.7 9.1 5.8 0.0 2.8 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Bmp PF02608.14 gi|242398175|ref|YP_002993599.1| - 3e-53 180.8 2.5 4.8e-53 180.1 2.5 1.3 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Not3 PF04065.15 gi|242398175|ref|YP_002993599.1| - 0.053 12.9 2.2 0.083 12.3 2.2 1.2 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component LPD11 PF18824.1 gi|242398175|ref|YP_002993599.1| - 0.18 11.9 0.5 0.53 10.4 0.0 2.0 2 1 0 2 2 2 0 Large polyvalent protein-associated domain 11 PGM_PMM_I PF02878.16 gi|242398177|ref|YP_002993601.1| - 7.1e-46 155.4 0.0 1.3e-45 154.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|242398177|ref|YP_002993601.1| - 8.7e-21 74.5 0.0 2.2e-20 73.2 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|242398177|ref|YP_002993601.1| - 4.3e-19 68.8 0.0 1e-18 67.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|242398177|ref|YP_002993601.1| - 1.1e-07 31.9 0.0 2.8e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|242398177|ref|YP_002993601.1| - 0.015 15.4 0.3 0.075 13.2 0.1 2.3 3 0 0 3 3 3 0 Damage-inducible protein CinA KH domain Flavodoxin_5 PF12724.7 gi|242398178|ref|YP_002993602.1| - 1.7e-09 38.1 0.0 2.3e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|242398178|ref|YP_002993602.1| - 7.9e-09 35.4 0.0 1.8e-05 24.5 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Methyltransf_25 PF13649.6 gi|242398179|ref|YP_002993603.1| - 1.3e-22 80.3 0.0 2.4e-22 79.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|242398179|ref|YP_002993603.1| - 2.5e-22 79.3 0.0 3.6e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|242398179|ref|YP_002993603.1| - 1.9e-19 70.1 0.0 3.8e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|242398179|ref|YP_002993603.1| - 1.2e-15 57.8 0.0 1.6e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|242398179|ref|YP_002993603.1| - 1.4e-14 54.6 0.0 2.3e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|242398179|ref|YP_002993603.1| - 2.8e-12 46.5 0.0 4.2e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|242398179|ref|YP_002993603.1| - 2.6e-11 43.4 0.0 5.1e-11 42.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|242398179|ref|YP_002993603.1| - 6.1e-11 42.1 0.0 7.6e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|242398179|ref|YP_002993603.1| - 1.7e-09 37.4 0.0 2.3e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.11 gi|242398179|ref|YP_002993603.1| - 2.9e-09 36.8 0.0 4.3e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.11 gi|242398179|ref|YP_002993603.1| - 2.1e-07 30.9 0.0 3.3e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_18 PF12847.7 gi|242398179|ref|YP_002993603.1| - 1.1e-05 25.4 0.0 3.2e-05 23.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|242398179|ref|YP_002993603.1| - 1.3e-05 25.2 0.0 1.6e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Pox_MCEL PF03291.16 gi|242398179|ref|YP_002993603.1| - 1.4e-05 24.4 0.0 1.8e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 mRNA capping enzyme PCMT PF01135.19 gi|242398179|ref|YP_002993603.1| - 1.6e-05 24.8 0.0 4.3e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|242398179|ref|YP_002993603.1| - 4.6e-05 22.6 0.0 5.7e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_2 PF00891.18 gi|242398179|ref|YP_002993603.1| - 0.00014 21.2 0.0 0.00042 19.7 0.0 1.7 1 1 0 1 1 1 1 O-methyltransferase domain Methyltransf_4 PF02390.17 gi|242398179|ref|YP_002993603.1| - 0.00019 20.9 0.0 0.0004 19.9 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase UPF0020 PF01170.18 gi|242398179|ref|YP_002993603.1| - 0.00026 20.8 0.0 0.00038 20.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|242398179|ref|YP_002993603.1| - 0.00032 20.2 0.0 0.00064 19.2 0.0 1.6 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) N2227 PF07942.12 gi|242398179|ref|YP_002993603.1| - 0.00038 19.7 0.0 0.00056 19.2 0.0 1.3 1 0 0 1 1 1 1 N2227-like protein adh_short PF00106.25 gi|242398179|ref|YP_002993603.1| - 0.0019 17.7 0.1 0.003 17.0 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase Methyltransf_15 PF09445.10 gi|242398179|ref|YP_002993603.1| - 0.0025 17.4 0.0 0.0038 16.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|242398179|ref|YP_002993603.1| - 0.0043 16.8 0.0 0.0055 16.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_9 PF08003.11 gi|242398179|ref|YP_002993603.1| - 0.0083 15.1 0.0 0.031 13.2 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) Methyltransf_5 PF01795.19 gi|242398179|ref|YP_002993603.1| - 0.01 15.4 0.0 0.024 14.2 0.0 1.5 1 1 0 2 2 2 0 MraW methylase family MetW PF07021.12 gi|242398179|ref|YP_002993603.1| - 0.011 15.3 0.1 0.017 14.7 0.1 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW TrkA_N PF02254.18 gi|242398179|ref|YP_002993603.1| - 0.022 15.0 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain DUF1327 PF07041.11 gi|242398179|ref|YP_002993603.1| - 0.031 14.3 0.0 0.058 13.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1327) Mur_ligase PF01225.25 gi|242398179|ref|YP_002993603.1| - 0.034 14.5 0.0 0.067 13.5 0.0 1.4 1 0 0 1 1 1 0 Mur ligase family, catalytic domain tRNA_U5-meth_tr PF05958.11 gi|242398179|ref|YP_002993603.1| - 0.038 13.0 0.0 0.051 12.6 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase CheR PF01739.18 gi|242398179|ref|YP_002993603.1| - 0.058 12.9 0.0 0.57 9.6 0.0 2.5 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain CmcI PF04989.12 gi|242398179|ref|YP_002993603.1| - 0.068 12.8 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase ADH_zinc_N PF00107.26 gi|242398179|ref|YP_002993603.1| - 0.075 13.0 0.2 3.8 7.5 0.1 2.6 3 0 0 3 3 3 0 Zinc-binding dehydrogenase adh_short_C2 PF13561.6 gi|242398179|ref|YP_002993603.1| - 0.11 12.0 0.2 0.19 11.3 0.2 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase 3HCDH_N PF02737.18 gi|242398179|ref|YP_002993603.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GidB PF02527.15 gi|242398179|ref|YP_002993603.1| - 0.14 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G DUF523 PF04463.12 gi|242398180|ref|YP_002993604.1| - 1e-07 32.1 0.0 2e-07 31.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF523) DUF2096 PF09869.9 gi|242398180|ref|YP_002993604.1| - 0.038 14.1 0.2 0.061 13.4 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2096) AAA_18 PF13238.6 gi|242398181|ref|YP_002993605.1| - 3e-19 69.9 0.1 4.2e-19 69.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|242398181|ref|YP_002993605.1| - 2.3e-05 24.9 0.2 6.4e-05 23.4 0.2 1.7 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|242398181|ref|YP_002993605.1| - 0.00012 21.8 0.1 0.0027 17.4 0.0 2.3 2 0 0 2 2 2 1 Dephospho-CoA kinase dNK PF01712.19 gi|242398181|ref|YP_002993605.1| - 0.00015 21.7 0.5 0.2 11.5 0.0 2.4 2 1 0 2 2 2 2 Deoxynucleoside kinase AAA_33 PF13671.6 gi|242398181|ref|YP_002993605.1| - 0.0024 18.0 0.1 0.03 14.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain Glyco_tranf_2_2 PF10111.9 gi|242398181|ref|YP_002993605.1| - 0.059 12.8 0.1 0.91 8.9 0.0 2.1 1 1 1 2 2 2 0 Glycosyltransferase like family 2 TBP PF00352.21 gi|242398183|ref|YP_002993607.1| - 0.0001 22.2 0.1 0.00012 22.0 0.1 1.1 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) UPF0180 PF03698.13 gi|242398183|ref|YP_002993607.1| - 0.065 13.4 0.0 0.088 13.0 0.0 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) Fanconi_A PF03511.14 gi|242398183|ref|YP_002993607.1| - 0.082 12.8 0.2 1.6 8.7 0.0 2.2 2 1 0 2 2 2 0 Fanconi anaemia group A protein DUF5643 PF18705.1 gi|242398184|ref|YP_002993608.1| - 0.04 13.9 1.6 0.54 10.3 1.5 2.3 1 1 0 1 1 1 0 Family of unknown function (DUF5643) YfdX PF10938.8 gi|242398185|ref|YP_002993609.1| - 4.7e-05 23.4 9.8 0.03 14.2 0.0 3.3 2 1 0 2 2 2 1 YfdX protein PPR PF01535.20 gi|242398185|ref|YP_002993609.1| - 0.0049 17.0 0.5 9.2 6.8 0.0 3.7 3 0 0 3 3 2 2 PPR repeat Sec8_exocyst PF04048.14 gi|242398185|ref|YP_002993609.1| - 0.016 15.1 4.2 4.1 7.3 0.0 3.8 2 2 2 4 4 4 0 Sec8 exocyst complex component specific domain PX PF00787.24 gi|242398185|ref|YP_002993609.1| - 0.042 13.8 0.8 2.2 8.3 0.0 2.5 2 0 0 2 2 2 0 PX domain T2SS_PulS_OutS PF09691.10 gi|242398185|ref|YP_002993609.1| - 0.084 13.0 0.2 1.4 9.1 0.0 2.8 3 0 0 3 3 3 0 Type II secretion system pilotin lipoprotein (PulS_OutS) PPR_2 PF13041.6 gi|242398185|ref|YP_002993609.1| - 0.093 12.9 0.2 5.3 7.3 0.0 2.7 2 0 0 2 2 2 0 PPR repeat family DUF4070 PF13282.6 gi|242398185|ref|YP_002993609.1| - 0.094 12.8 2.0 0.22 11.6 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4070) Lyase_8_N PF08124.11 gi|242398185|ref|YP_002993609.1| - 0.13 11.2 2.5 0.12 11.3 0.3 2.0 2 1 0 2 2 2 0 Polysaccharide lyase family 8, N terminal alpha-helical domain TPR_2 PF07719.17 gi|242398185|ref|YP_002993609.1| - 0.19 12.0 4.6 29 5.1 0.1 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF4363 PF14276.6 gi|242398185|ref|YP_002993609.1| - 0.26 11.4 6.2 0.39 10.9 0.3 3.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4363) 4HB_MCP_1 PF12729.7 gi|242398185|ref|YP_002993609.1| - 0.47 10.0 20.6 0.017 14.6 8.7 3.3 1 1 3 4 4 4 0 Four helix bundle sensory module for signal transduction Nif11 PF07862.11 gi|242398185|ref|YP_002993609.1| - 1.1 9.7 4.3 2.8 8.3 0.5 3.8 2 1 1 3 3 3 0 Nif11 domain PPR_1 PF12854.7 gi|242398185|ref|YP_002993609.1| - 1.2 8.9 4.3 17 5.2 0.1 2.6 2 0 0 2 2 2 0 PPR repeat Aminotran_5 PF00266.19 gi|242398186|ref|YP_002993610.1| - 7.6e-137 456.2 0.0 8.6e-137 456.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|242398186|ref|YP_002993610.1| - 6.3e-05 22.3 0.0 0.00019 20.7 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|242398186|ref|YP_002993610.1| - 0.00017 20.3 0.0 0.00034 19.3 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|242398186|ref|YP_002993610.1| - 0.00068 19.0 0.0 0.00086 18.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|242398186|ref|YP_002993610.1| - 0.00091 18.6 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family ECF_trnsprt PF12822.7 gi|242398188|ref|YP_002993612.1| - 8.3e-05 22.8 20.5 9.6e-05 22.5 20.5 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component 7tm_3 PF00003.22 gi|242398188|ref|YP_002993612.1| - 0.00098 18.9 8.1 0.00098 18.9 8.1 1.6 1 1 1 2 2 2 1 7 transmembrane sweet-taste receptor of 3 GCPR C5-epim_C PF06662.13 gi|242398189|ref|YP_002993613.1| - 9.3e-42 142.7 8.2 1.8e-41 141.7 8.2 1.4 1 0 0 1 1 1 1 D-glucuronyl C5-epimerase C-terminus C5-epim_C PF06662.13 gi|242398190|ref|YP_002993614.1| - 1.5e-42 145.3 13.8 1.5e-42 145.3 13.8 1.8 2 0 0 2 2 2 1 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_88 PF07470.13 gi|242398190|ref|YP_002993614.1| - 0.034 13.2 4.8 0.5 9.4 0.9 2.3 1 1 0 2 2 2 0 Glycosyl Hydrolase Family 88 ThiP_synth PF10120.9 gi|242398191|ref|YP_002993615.1| - 2e-49 167.4 0.0 3.3e-49 166.7 0.0 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_37 PF13744.6 gi|242398191|ref|YP_002993615.1| - 2.8e-05 24.0 0.0 5.3e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|242398191|ref|YP_002993615.1| - 3.8e-05 23.6 0.1 9.2e-05 22.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|242398191|ref|YP_002993615.1| - 0.00011 22.1 0.0 0.00042 20.3 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|242398191|ref|YP_002993615.1| - 0.0025 17.7 0.0 0.0047 16.8 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.6 gi|242398191|ref|YP_002993615.1| - 0.0042 16.8 0.0 0.025 14.4 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 gi|242398191|ref|YP_002993615.1| - 0.0051 16.4 0.1 0.089 12.4 0.0 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_31 PF13560.6 gi|242398191|ref|YP_002993615.1| - 0.0056 17.0 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|242398191|ref|YP_002993615.1| - 0.0056 16.4 0.0 0.014 15.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|242398191|ref|YP_002993615.1| - 0.0087 15.6 0.0 0.019 14.4 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.15 gi|242398191|ref|YP_002993615.1| - 0.011 15.8 0.0 0.22 11.6 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase YdaS_antitoxin PF15943.5 gi|242398191|ref|YP_002993615.1| - 0.024 14.5 0.0 0.048 13.5 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MarR PF01047.22 gi|242398191|ref|YP_002993615.1| - 0.026 14.4 0.0 0.061 13.3 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|242398191|ref|YP_002993615.1| - 0.057 13.4 0.1 0.4 10.7 0.0 2.4 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain Cro PF09048.10 gi|242398191|ref|YP_002993615.1| - 0.073 13.1 0.1 0.17 12.0 0.1 1.5 1 0 0 1 1 1 0 Cro HTH_26 PF13443.6 gi|242398191|ref|YP_002993615.1| - 0.075 13.5 0.0 0.17 12.4 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_28 PF13518.6 gi|242398191|ref|YP_002993615.1| - 0.11 12.7 0.0 0.47 10.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|242398191|ref|YP_002993615.1| - 0.12 12.4 0.1 0.42 10.6 0.1 1.9 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.12 gi|242398191|ref|YP_002993615.1| - 0.12 12.1 0.2 0.33 10.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 RepB PF07506.11 gi|242398191|ref|YP_002993615.1| - 0.14 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 RepB plasmid partitioning protein KorB PF08535.10 gi|242398191|ref|YP_002993615.1| - 0.15 12.1 0.2 0.69 10.0 0.0 2.3 2 0 0 2 2 2 0 KorB domain VanZ PF04892.12 gi|242398192|ref|YP_002993616.1| - 7.4e-10 39.6 0.5 1.1e-09 39.0 0.5 1.3 1 0 0 1 1 1 1 VanZ like family UPF0047 PF01894.17 gi|242398193|ref|YP_002993617.1| - 4.8e-35 120.2 0.0 5.5e-35 120.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Lactamase_B_2 PF12706.7 gi|242398194|ref|YP_002993618.1| - 4.1e-24 85.2 0.0 5.4e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|242398194|ref|YP_002993618.1| - 5.8e-12 46.0 0.2 8.8e-12 45.4 0.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|242398194|ref|YP_002993618.1| - 5.9e-06 26.3 0.0 8.2e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|242398194|ref|YP_002993618.1| - 7.3e-05 22.0 0.0 0.0015 17.7 0.4 2.2 1 1 1 2 2 2 1 cAMP phosphodiesterases class-II Lactamase_B_6 PF16661.5 gi|242398194|ref|YP_002993618.1| - 0.15 11.5 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain DUF45 PF01863.17 gi|242398195|ref|YP_002993619.1| - 2.8e-46 158.2 2.9 1.9e-45 155.5 2.9 1.9 1 1 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|242398195|ref|YP_002993619.1| - 0.023 14.8 0.1 0.051 13.6 0.1 1.5 1 0 0 1 1 1 0 WLM domain TilS_C PF11734.8 gi|242398195|ref|YP_002993619.1| - 0.028 13.8 0.5 0.028 13.8 0.5 1.7 2 0 0 2 2 2 0 TilS substrate C-terminal domain Lactamase_B PF00753.27 gi|242398196|ref|YP_002993620.1| - 1.5e-06 28.4 0.0 5e-06 26.7 0.0 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|242398196|ref|YP_002993620.1| - 3.2e-06 27.1 0.0 8.6e-06 25.7 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|242398196|ref|YP_002993620.1| - 0.00011 21.8 0.0 0.15 11.6 0.0 2.4 2 0 0 2 2 2 2 Beta-lactamase superfamily domain SHOCT PF09851.9 gi|242398196|ref|YP_002993620.1| - 0.12 12.2 0.4 4.4 7.2 0.0 2.5 2 0 0 2 2 2 0 Short C-terminal domain SnoaL PF07366.12 gi|242398197|ref|YP_002993621.1| - 3.6e-38 130.2 0.2 4e-38 130.1 0.2 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|242398197|ref|YP_002993621.1| - 7e-23 81.2 0.0 8.1e-23 81.0 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain Spo0A_C PF08769.11 gi|242398197|ref|YP_002993621.1| - 0.015 15.3 0.0 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 Sporulation initiation factor Spo0A C terminal Lipoprotein_15 PF03640.15 gi|242398197|ref|YP_002993621.1| - 0.027 14.0 0.0 0.052 13.1 0.0 1.5 1 0 0 1 1 1 0 Secreted repeat of unknown function NMT PF01233.19 gi|242398197|ref|YP_002993621.1| - 0.1 12.4 0.2 0.13 12.1 0.2 1.1 1 0 0 1 1 1 0 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain ATP-grasp_5 PF13549.6 gi|242398198|ref|YP_002993622.1| - 1.1e-77 260.4 0.2 1.2e-77 260.3 0.2 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|242398198|ref|YP_002993622.1| - 5.9e-05 22.7 0.1 0.0002 21.0 0.1 1.8 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|242398198|ref|YP_002993622.1| - 0.0041 16.6 0.0 0.0078 15.7 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Succ_CoA_lig PF13607.6 gi|242398199|ref|YP_002993623.1| - 3.2e-56 188.9 5.9 1.2e-54 183.8 0.8 2.9 4 0 0 4 4 4 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|242398199|ref|YP_002993623.1| - 2.6e-28 98.9 0.8 2.4e-25 89.3 0.0 3.3 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|242398199|ref|YP_002993623.1| - 1.5e-15 57.6 5.0 2.7e-15 56.8 0.9 2.6 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|242398199|ref|YP_002993623.1| - 0.0024 17.7 0.2 0.0063 16.3 0.1 1.8 2 0 0 2 2 2 1 CoA-ligase B12-binding PF02310.19 gi|242398199|ref|YP_002993623.1| - 0.0088 16.1 0.2 0.16 12.0 0.0 2.8 2 1 1 3 3 3 1 B12 binding domain Hpr_kinase_N PF02603.16 gi|242398199|ref|YP_002993623.1| - 0.016 15.3 0.0 0.79 9.8 0.0 2.6 2 0 0 2 2 2 0 HPr Serine kinase N terminus Asparaginase_C PF17763.1 gi|242398199|ref|YP_002993623.1| - 0.025 14.8 0.3 0.42 10.9 0.0 3.0 4 0 0 4 4 4 0 Glutaminase/Asparaginase C-terminal domain GFO_IDH_MocA PF01408.22 gi|242398199|ref|YP_002993623.1| - 0.076 13.8 0.1 4 8.3 0.0 2.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Radical_SAM PF04055.21 gi|242398199|ref|YP_002993623.1| - 0.077 13.4 0.7 9.8 6.5 0.2 3.1 3 1 0 3 3 3 0 Radical SAM superfamily AP_endonuc_2 PF01261.24 gi|242398200|ref|YP_002993624.1| - 2.6e-24 85.9 0.0 3e-24 85.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PTPS_related PF10131.9 gi|242398200|ref|YP_002993624.1| - 0.12 10.7 0.0 0.15 10.4 0.0 1.1 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein AIM24 PF01987.17 gi|242398201|ref|YP_002993625.1| - 1.3e-59 201.4 0.6 1.4e-59 201.3 0.6 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 HhH-GPD PF00730.25 gi|242398202|ref|YP_002993626.1| - 3.1e-17 63.0 0.0 5.2e-17 62.3 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|242398202|ref|YP_002993626.1| - 1.5e-07 30.9 0.1 4.2e-07 29.5 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|242398202|ref|YP_002993626.1| - 1.9e-05 24.7 0.0 0.0096 16.0 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|242398202|ref|YP_002993626.1| - 0.0074 16.9 0.0 1.5 9.5 0.0 2.7 3 0 0 3 3 3 1 Helix-hairpin-helix domain DUF4238 PF14022.6 gi|242398202|ref|YP_002993626.1| - 0.011 15.3 0.1 0.011 15.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4238) Nic96 PF04097.14 gi|242398202|ref|YP_002993626.1| - 0.015 13.7 0.2 0.019 13.4 0.2 1.1 1 0 0 1 1 1 0 Nup93/Nic96 DUF2400 PF09674.10 gi|242398202|ref|YP_002993626.1| - 0.045 13.7 0.1 0.15 12.0 0.0 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2400) EndIII_4Fe-2S PF10576.9 gi|242398202|ref|YP_002993626.1| - 0.074 13.4 3.3 0.12 12.7 3.3 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III CDC48_2 PF02933.17 gi|242398203|ref|YP_002993627.1| - 3.3e-07 30.0 0.1 5.2e-07 29.3 0.1 1.3 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 DUF2375 PF09558.10 gi|242398203|ref|YP_002993627.1| - 0.066 13.2 0.2 0.19 11.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2375) PadR PF03551.14 gi|242398204|ref|YP_002993628.1| - 3.6e-18 65.3 1.5 5e-18 64.8 0.8 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|242398204|ref|YP_002993628.1| - 0.00013 21.7 1.9 0.00075 19.3 0.1 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4364) RTP PF02334.16 gi|242398204|ref|YP_002993628.1| - 0.0013 19.4 0.2 0.0053 17.4 0.1 1.9 1 1 1 2 2 2 1 Replication terminator protein HTH_45 PF14947.6 gi|242398204|ref|YP_002993628.1| - 0.0013 18.6 0.1 0.003 17.5 0.1 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|242398204|ref|YP_002993628.1| - 0.0058 16.8 0.0 0.017 15.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|242398204|ref|YP_002993628.1| - 0.089 12.6 0.3 0.26 11.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) PsbU PF06514.11 gi|242398204|ref|YP_002993628.1| - 0.09 12.8 0.3 0.34 10.9 0.0 1.9 2 0 0 2 2 2 0 Photosystem II 12 kDa extrinsic protein (PsbU) ABC_tran PF00005.27 gi|242398205|ref|YP_002993629.1| - 1.6e-34 119.4 0.0 3.1e-34 118.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242398205|ref|YP_002993629.1| - 5.3e-11 42.9 0.4 4.4e-07 30.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|242398205|ref|YP_002993629.1| - 7.9e-09 36.1 0.0 2.3e-08 34.6 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|242398205|ref|YP_002993629.1| - 1.4e-06 28.3 0.2 0.028 14.1 0.3 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|242398205|ref|YP_002993629.1| - 0.00027 21.5 1.2 0.00062 20.3 1.2 1.7 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|242398205|ref|YP_002993629.1| - 0.0034 17.1 0.2 0.0066 16.1 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SMC_N PF02463.19 gi|242398205|ref|YP_002993629.1| - 0.0063 16.0 0.0 0.018 14.5 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|242398205|ref|YP_002993629.1| - 0.0065 16.2 0.1 0.012 15.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|242398205|ref|YP_002993629.1| - 0.0067 16.0 0.1 0.014 15.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|242398205|ref|YP_002993629.1| - 0.0077 16.7 0.7 0.18 12.2 0.7 2.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|242398205|ref|YP_002993629.1| - 0.074 11.7 0.0 3.2 6.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|242398205|ref|YP_002993629.1| - 0.11 12.3 0.1 0.32 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|242398205|ref|YP_002993629.1| - 0.12 12.3 0.0 0.29 11.0 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase ABC2_membrane PF01061.24 gi|242398206|ref|YP_002993630.1| - 1.1e-37 129.6 18.1 1.1e-37 129.6 18.1 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|242398206|ref|YP_002993630.1| - 4.1e-15 55.7 25.8 4.8e-15 55.5 25.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2585 PF10755.9 gi|242398206|ref|YP_002993630.1| - 0.033 13.9 0.7 0.37 10.5 0.7 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2585) PGK PF00162.19 gi|242398207|ref|YP_002993631.1| - 8.7e-109 363.9 0.0 9.8e-109 363.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase LuxE PF04443.12 gi|242398207|ref|YP_002993631.1| - 0.029 13.4 0.0 4.6 6.2 0.0 2.3 2 0 0 2 2 2 0 Acyl-protein synthetase, LuxE VacA2 PF03077.14 gi|242398207|ref|YP_002993631.1| - 0.066 13.1 0.0 0.21 11.5 0.0 1.9 1 0 0 1 1 1 0 Putative vacuolating cytotoxin Mrr_cat PF04471.12 gi|242398208|ref|YP_002993632.1| - 3.6e-11 43.1 0.0 6.5e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease PepSY PF03413.19 gi|242398208|ref|YP_002993632.1| - 1.8e-06 28.4 9.6 0.0067 17.0 0.3 5.1 6 0 0 6 6 6 3 Peptidase propeptide and YPEB domain PBP5_C PF07943.13 gi|242398208|ref|YP_002993632.1| - 0.027 14.7 0.3 0.027 14.7 0.3 3.2 3 0 0 3 3 3 0 Penicillin-binding protein 5, C-terminal domain PepSY_like PF11396.8 gi|242398208|ref|YP_002993632.1| - 0.049 14.2 0.1 0.049 14.2 0.1 4.1 5 0 0 5 5 5 0 Putative beta-lactamase-inhibitor-like, PepSY-like Metallophos PF00149.28 gi|242398210|ref|YP_002993634.1| - 3.6e-13 50.5 2.3 6.9e-13 49.6 2.3 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|242398210|ref|YP_002993634.1| - 0.00022 21.5 0.0 0.00069 19.9 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF4625 PF15418.6 gi|242398210|ref|YP_002993634.1| - 0.021 15.1 0.0 0.11 12.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) Mucin PF01456.17 gi|242398210|ref|YP_002993634.1| - 0.66 10.0 20.0 0.28 11.2 17.1 1.8 2 0 0 2 2 2 0 Mucin-like glycoprotein SSP160 PF06933.11 gi|242398210|ref|YP_002993634.1| - 1.9 6.6 16.6 2.8 6.0 16.6 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 MSA-2c PF12238.8 gi|242398210|ref|YP_002993634.1| - 6.8 6.6 7.5 14 5.6 7.5 1.4 1 0 0 1 1 1 0 Merozoite surface antigen 2c DUF447 PF04289.12 gi|242398211|ref|YP_002993635.1| - 3.5e-22 79.0 0.0 4.1e-22 78.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) ABC_tran PF00005.27 gi|242398212|ref|YP_002993636.1| - 1.4e-33 116.3 0.0 2.2e-33 115.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242398212|ref|YP_002993636.1| - 3.8e-08 33.5 0.1 0.0029 17.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|242398212|ref|YP_002993636.1| - 2.4e-05 24.4 0.6 0.00012 22.2 0.0 2.4 3 0 0 3 3 3 1 TOBE domain Rad17 PF03215.15 gi|242398212|ref|YP_002993636.1| - 0.0015 18.5 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_25 PF13481.6 gi|242398212|ref|YP_002993636.1| - 0.0087 15.7 0.0 0.41 10.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain Myosin_N PF02736.19 gi|242398212|ref|YP_002993636.1| - 0.046 13.6 2.0 0.059 13.2 0.1 2.2 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain RsgA_GTPase PF03193.16 gi|242398212|ref|YP_002993636.1| - 0.049 13.5 0.1 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 gi|242398212|ref|YP_002993636.1| - 0.049 13.9 0.8 0.36 11.1 0.8 2.1 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|242398212|ref|YP_002993636.1| - 0.05 14.1 0.3 0.072 13.6 0.3 1.5 1 1 0 1 1 1 0 AAA domain OB_MalK PF17912.1 gi|242398212|ref|YP_002993636.1| - 0.088 13.6 0.5 0.37 11.7 0.1 2.3 2 0 0 2 2 2 0 MalK OB fold domain AAA PF00004.29 gi|242398212|ref|YP_002993636.1| - 0.099 13.1 0.0 0.63 10.5 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|242398212|ref|YP_002993636.1| - 0.11 12.3 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|242398212|ref|YP_002993636.1| - 0.14 12.6 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|242398212|ref|YP_002993636.1| - 0.16 12.2 0.0 2.2 8.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|242398213|ref|YP_002993637.1| - 8.4e-24 84.3 34.6 1.3e-13 51.1 16.4 4.2 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|242398214|ref|YP_002993638.1| - 3.3e-21 76.3 1.0 1.8e-20 73.9 0.0 2.3 1 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|242398214|ref|YP_002993638.1| - 1.1e-19 70.8 0.2 1.8e-19 70.2 0.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|242398214|ref|YP_002993638.1| - 6.9e-13 49.2 0.8 6.9e-13 49.2 0.8 1.8 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|242398214|ref|YP_002993638.1| - 0.00011 22.1 0.6 0.0096 15.7 0.0 3.1 3 1 0 3 3 3 1 Bacterial extracellular solute-binding protein DUF3644 PF12358.8 gi|242398214|ref|YP_002993638.1| - 0.0056 17.1 0.2 0.015 15.8 0.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3644) HeH PF12949.7 gi|242398214|ref|YP_002993638.1| - 0.063 13.0 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 HeH/LEM domain Orthopox_A5L PF06193.11 gi|242398214|ref|YP_002993638.1| - 0.55 9.6 10.8 0.9 8.9 10.8 1.2 1 0 0 1 1 1 0 Orthopoxvirus A5L protein-like SSP160 PF06933.11 gi|242398214|ref|YP_002993638.1| - 4.1 5.5 10.3 5.7 5.0 10.3 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 ABC_transp_aux PF09822.9 gi|242398215|ref|YP_002993639.1| - 0.00027 20.5 0.0 0.00046 19.7 0.0 1.4 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DDOST_48kD PF03345.14 gi|242398215|ref|YP_002993639.1| - 0.024 13.5 0.0 0.041 12.7 0.0 1.4 1 1 0 1 1 1 0 Oligosaccharyltransferase 48 kDa subunit beta DUF5305 PF17231.2 gi|242398215|ref|YP_002993639.1| - 0.12 11.7 4.8 0.11 11.9 2.0 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5305) tRNA-synt_1b PF00579.25 gi|242398216|ref|YP_002993640.1| - 2.3e-43 148.6 0.1 6.7e-43 147.1 0.1 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_2c PF01411.19 gi|242398217|ref|YP_002993641.1| - 1.5e-12 46.9 0.0 2e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|242398217|ref|YP_002993641.1| - 6.6e-11 42.1 0.8 3.7e-10 39.7 0.3 2.2 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain CoatB PF10389.9 gi|242398218|ref|YP_002993642.1| - 0.025 14.4 0.1 0.041 13.7 0.1 1.4 1 0 0 1 1 1 0 Bacteriophage coat protein B Gram_pos_anchor PF00746.21 gi|242398218|ref|YP_002993642.1| - 0.069 13.1 1.0 0.097 12.6 1.0 1.2 1 0 0 1 1 1 0 LPXTG cell wall anchor motif DUF3858 PF12970.7 gi|242398219|ref|YP_002993643.1| - 0.03 14.4 0.0 0.085 12.9 0.0 1.7 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3858) Pro-MCH PF05824.12 gi|242398219|ref|YP_002993643.1| - 0.16 11.9 0.1 0.35 10.8 0.1 1.5 1 0 0 1 1 1 0 Pro-melanin-concentrating hormone (Pro-MCH) PG_binding_4 PF12229.8 gi|242398219|ref|YP_002993643.1| - 2.7 8.3 6.5 2.9 8.2 1.5 2.5 2 0 0 2 2 2 0 Putative peptidoglycan binding domain SDF PF00375.18 gi|242398220|ref|YP_002993644.1| - 6e-125 417.3 40.7 6.7e-125 417.1 40.7 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family BPL_LplA_LipB PF03099.19 gi|242398221|ref|YP_002993645.1| - 1.4e-19 70.3 0.0 1.9e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|242398221|ref|YP_002993645.1| - 4.2e-12 45.8 0.1 1e-11 44.5 0.1 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 gi|242398221|ref|YP_002993645.1| - 0.016 14.8 0.0 0.019 14.5 0.0 1.3 1 1 0 1 1 1 0 Biotin/lipoate A/B protein ligase family DeoC PF01791.9 gi|242398222|ref|YP_002993646.1| - 2.9e-34 118.7 0.0 3.4e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PYC_OADA PF02436.18 gi|242398223|ref|YP_002993647.1| - 1.1e-58 198.3 1.0 2.6e-58 197.0 0.1 2.0 2 1 1 3 3 3 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|242398223|ref|YP_002993647.1| - 9.9e-43 146.6 0.0 1.3e-42 146.2 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|242398223|ref|YP_002993647.1| - 4.1e-24 84.2 2.4 4.1e-24 84.2 2.4 1.9 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|242398223|ref|YP_002993647.1| - 3.6e-14 52.3 1.5 4.1e-06 26.5 0.0 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|242398223|ref|YP_002993647.1| - 5.2e-05 23.9 0.3 0.21 12.3 0.0 2.6 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|242398223|ref|YP_002993647.1| - 0.00046 19.5 0.2 0.22 10.7 0.0 2.4 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion RnfC_N PF13375.6 gi|242398223|ref|YP_002993647.1| - 0.0053 16.7 0.6 0.33 10.9 0.1 2.8 1 1 1 2 2 2 2 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.20 gi|242398223|ref|YP_002993647.1| - 0.011 15.5 0.5 1.9 8.2 0.0 2.8 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQRA PF05896.11 gi|242398223|ref|YP_002993647.1| - 0.038 13.4 0.9 0.41 10.0 0.3 2.1 1 1 1 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) zf-C4H2 PF10146.9 gi|242398223|ref|YP_002993647.1| - 0.062 13.6 0.1 1.5 9.1 0.0 2.4 2 1 0 2 2 2 0 Zinc finger-containing protein ComA PF02679.15 gi|242398223|ref|YP_002993647.1| - 0.065 12.7 0.2 4.2 6.8 0.2 2.4 1 1 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) CstA PF02554.14 gi|242398224|ref|YP_002993648.1| - 2.5e-109 365.6 29.2 2.5e-109 365.6 29.2 2.1 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|242398224|ref|YP_002993648.1| - 1.4e-29 102.8 13.5 1.4e-29 102.8 13.5 3.1 4 0 0 4 4 4 1 5TM C-terminal transporter carbon starvation CstA RhoGEF67_u2 PF16614.5 gi|242398225|ref|YP_002993649.1| - 0.17 12.0 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 Unstructured region two on RhoGEF 6 and 7 ArsA_ATPase PF02374.15 gi|242398227|ref|YP_002993651.1| - 1.4e-77 260.9 0.7 1.8e-77 260.6 0.7 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|242398227|ref|YP_002993651.1| - 4.5e-18 65.8 0.2 1.9e-17 63.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|242398227|ref|YP_002993651.1| - 2.7e-11 43.6 0.0 8.7e-11 42.0 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|242398227|ref|YP_002993651.1| - 3.6e-06 26.6 0.2 2.2e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|242398227|ref|YP_002993651.1| - 2.5e-05 23.9 2.6 0.00011 21.8 0.0 2.6 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase ATP_bind_1 PF03029.17 gi|242398227|ref|YP_002993651.1| - 5.3e-05 23.1 0.7 0.002 18.0 0.1 2.8 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|242398227|ref|YP_002993651.1| - 5.6e-05 22.9 0.0 0.00021 21.0 0.0 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 gi|242398227|ref|YP_002993651.1| - 0.00057 19.4 0.0 0.0012 18.4 0.0 1.7 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MeaB PF03308.16 gi|242398227|ref|YP_002993651.1| - 0.0028 16.7 0.0 0.0053 15.8 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|242398227|ref|YP_002993651.1| - 0.014 15.0 0.0 0.049 13.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|242398227|ref|YP_002993651.1| - 0.016 14.7 0.8 0.082 12.3 0.8 2.1 1 1 0 1 1 1 0 PhoH-like protein MipZ PF09140.11 gi|242398227|ref|YP_002993651.1| - 0.02 14.2 0.4 0.5 9.6 0.3 2.3 1 1 0 2 2 2 0 ATPase MipZ AAA_30 PF13604.6 gi|242398227|ref|YP_002993651.1| - 0.034 13.9 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|242398227|ref|YP_002993651.1| - 0.052 12.7 0.3 0.14 11.3 0.2 1.9 1 1 1 2 2 2 0 NB-ARC domain AAA_33 PF13671.6 gi|242398227|ref|YP_002993651.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain FlaC_arch PF05377.11 gi|242398227|ref|YP_002993651.1| - 0.14 12.5 0.5 0.14 12.5 0.5 2.8 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) AAA_16 PF13191.6 gi|242398227|ref|YP_002993651.1| - 0.17 12.2 0.2 0.3 11.5 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain FeS_assembly_P PF01883.19 gi|242398228|ref|YP_002993652.1| - 2.1e-05 24.6 0.6 7.6e-05 22.8 0.5 1.9 1 1 0 1 1 1 1 Iron-sulfur cluster assembly protein VASP_tetra PF08776.11 gi|242398228|ref|YP_002993652.1| - 1.4 8.6 5.0 0.3 10.7 0.6 2.1 3 0 0 3 3 3 0 VASP tetramerisation domain RPAP3_C PF13877.6 gi|242398229|ref|YP_002993653.1| - 0.052 14.1 0.0 0.1 13.2 0.0 1.6 1 0 0 1 1 1 0 Potential Monad-binding region of RPAP3 Methyltr_RsmB-F PF01189.17 gi|242398230|ref|YP_002993654.1| - 2.7e-58 196.9 0.0 3.5e-58 196.6 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|242398230|ref|YP_002993654.1| - 1.7e-18 66.9 0.0 3.5e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|242398230|ref|YP_002993654.1| - 1.4e-06 28.5 0.0 2.6e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|242398230|ref|YP_002993654.1| - 5.4e-05 23.0 0.0 8.3e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF257 PF03192.13 gi|242398231|ref|YP_002993655.1| - 5.9e-25 88.3 0.1 6.4e-25 88.2 0.1 1.1 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 ssDBP_DBD PF18361.1 gi|242398231|ref|YP_002993655.1| - 0.05 13.7 0.8 0.4 10.8 0.0 2.4 1 1 1 2 2 2 0 Single stranded DNA-binding protein ss DNA binding domain DUF257 PF03192.13 gi|242398232|ref|YP_002993656.1| - 5.9e-33 114.4 3.0 6.7e-33 114.2 3.0 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 DUF3148 PF11347.8 gi|242398233|ref|YP_002993657.1| - 0.14 12.0 0.2 28 4.6 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3148) Metallophos PF00149.28 gi|242398234|ref|YP_002993658.1| - 7.3e-08 33.1 0.0 1.2e-07 32.5 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|242398234|ref|YP_002993658.1| - 2.7e-07 30.9 0.0 3.5e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain YqgF PF14639.6 gi|242398234|ref|YP_002993658.1| - 0.015 15.1 0.1 0.022 14.5 0.1 1.2 1 0 0 1 1 1 0 Holliday-junction resolvase-like of SPT6 DUF2268 PF10026.9 gi|242398234|ref|YP_002993658.1| - 0.046 13.3 0.0 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF2183 PF09949.9 gi|242398234|ref|YP_002993658.1| - 0.055 13.8 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2183) Sacchrp_dh_C PF16653.5 gi|242398235|ref|YP_002993659.1| - 2.3e-31 109.9 0.0 3.6e-31 109.3 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|242398235|ref|YP_002993659.1| - 1.3e-17 64.3 0.0 2e-17 63.7 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|242398235|ref|YP_002993659.1| - 9.7e-06 25.0 0.1 1.5e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|242398235|ref|YP_002993659.1| - 0.00011 22.3 0.1 0.00033 20.7 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|242398235|ref|YP_002993659.1| - 0.00014 22.6 0.0 0.00026 21.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|242398235|ref|YP_002993659.1| - 0.00024 21.4 0.1 0.00074 19.8 0.1 2.0 1 1 0 1 1 1 1 TrkA-N domain Semialdhyde_dh PF01118.24 gi|242398235|ref|YP_002993659.1| - 0.0008 19.8 0.2 0.0018 18.7 0.1 1.6 2 0 0 2 2 1 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|242398235|ref|YP_002993659.1| - 0.002 18.6 0.1 0.0077 16.8 0.1 2.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 gi|242398235|ref|YP_002993659.1| - 0.0037 17.4 0.1 0.0067 16.5 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus CoA_binding PF02629.19 gi|242398235|ref|YP_002993659.1| - 0.0041 17.8 0.1 0.077 13.7 0.0 2.3 2 0 0 2 2 2 1 CoA binding domain ApbA PF02558.16 gi|242398235|ref|YP_002993659.1| - 0.055 13.1 0.0 0.099 12.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GARS_N PF02844.15 gi|242398235|ref|YP_002993659.1| - 0.068 14.0 0.0 0.16 12.8 0.0 1.8 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain IlvN PF07991.12 gi|242398235|ref|YP_002993659.1| - 0.09 12.3 0.0 0.56 9.8 0.0 2.0 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|242398235|ref|YP_002993659.1| - 0.099 12.0 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|242398235|ref|YP_002993659.1| - 0.13 12.1 0.0 0.82 9.5 0.1 2.3 2 1 1 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|242398235|ref|YP_002993659.1| - 0.19 12.4 0.0 0.62 10.7 0.0 1.8 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain EMG1 PF03587.14 gi|242398236|ref|YP_002993660.1| - 3.5e-49 167.1 0.0 4e-49 166.9 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase eIF-5a PF01287.20 gi|242398237|ref|YP_002993661.1| - 3.9e-12 46.1 0.7 6e-12 45.5 0.7 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|242398237|ref|YP_002993661.1| - 0.00058 19.8 0.0 0.0015 18.5 0.0 1.8 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|242398237|ref|YP_002993661.1| - 0.11 12.6 0.3 0.22 11.6 0.3 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain DNA_pol_B_3 PF08408.10 gi|242398237|ref|YP_002993661.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.5 1 1 0 1 1 1 0 DNA polymerase family B viral insert Arginase PF00491.21 gi|242398238|ref|YP_002993662.1| - 8.8e-62 209.1 0.0 1e-61 208.9 0.0 1.0 1 0 0 1 1 1 1 Arginase family Voltage_CLC PF00654.20 gi|242398239|ref|YP_002993663.1| - 2.1e-81 273.9 43.7 2.7e-81 273.6 36.1 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|242398239|ref|YP_002993663.1| - 4.9e-14 52.5 0.0 3.1e-06 27.5 0.0 2.7 2 0 0 2 2 2 2 CBS domain PGM_PMM_I PF02878.16 gi|242398240|ref|YP_002993664.1| - 1.9e-45 153.9 0.0 4.3e-45 152.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|242398240|ref|YP_002993664.1| - 1e-30 106.4 0.0 2.7e-30 105.0 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|242398240|ref|YP_002993664.1| - 3.7e-27 94.8 0.1 7.1e-27 93.9 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|242398240|ref|YP_002993664.1| - 1.2e-14 54.2 0.1 3.9e-14 52.6 0.1 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain MannoseP_isomer PF01050.18 gi|242398241|ref|YP_002993665.1| - 4e-66 221.6 0.6 8.5e-66 220.5 0.6 1.6 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|242398241|ref|YP_002993665.1| - 9e-62 208.9 0.1 1.5e-61 208.1 0.0 1.4 2 0 0 2 2 2 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|242398241|ref|YP_002993665.1| - 4.2e-12 45.6 0.4 1.2e-11 44.1 0.1 1.8 2 0 0 2 2 2 1 Cupin domain NTP_transf_3 PF12804.7 gi|242398241|ref|YP_002993665.1| - 1.1e-07 32.4 0.0 2.4e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain AraC_binding PF02311.19 gi|242398241|ref|YP_002993665.1| - 2.9e-05 24.0 0.0 5.4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Nit_Regul_Hom PF10126.9 gi|242398241|ref|YP_002993665.1| - 0.1 12.6 0.1 0.3 11.1 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII Hydrolase_3 PF08282.12 gi|242398242|ref|YP_002993666.1| - 4.1e-18 66.0 0.0 4.4e-16 59.4 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242398242|ref|YP_002993666.1| - 0.00024 21.5 0.5 0.084 13.1 0.0 2.9 2 2 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|242398242|ref|YP_002993666.1| - 0.00057 20.3 0.0 0.034 14.6 0.0 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|242398242|ref|YP_002993666.1| - 0.0022 17.5 0.0 2.6 7.5 0.0 2.6 2 1 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|242398242|ref|YP_002993666.1| - 0.074 13.2 0.0 0.27 11.4 0.0 1.9 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Osmo_MPGsynth PF09488.10 gi|242398243|ref|YP_002993667.1| - 1e-153 511.6 0.3 1.2e-153 511.4 0.3 1.0 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) ADP_PFK_GK PF04587.15 gi|242398244|ref|YP_002993668.1| - 2.6e-90 303.1 0.0 2.9e-90 302.9 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region DUF2299 PF10061.9 gi|242398244|ref|YP_002993668.1| - 0.16 11.7 1.1 9.8 5.9 0.0 3.1 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2299) Lactamase_B_2 PF12706.7 gi|242398245|ref|YP_002993669.1| - 0.0017 17.9 0.3 0.031 13.8 0.4 2.5 2 1 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|242398245|ref|YP_002993669.1| - 0.023 14.6 0.1 0.072 13.0 0.0 1.8 2 0 0 2 2 2 0 Zn-dependent metallo-hydrolase RNA specificity domain Sigma_reg_C PF13791.6 gi|242398245|ref|YP_002993669.1| - 0.11 12.8 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Sigma factor regulator C-terminal GCV_H PF01597.19 gi|242398246|ref|YP_002993670.1| - 2.8e-47 159.6 2.6 3.3e-47 159.4 2.6 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|242398246|ref|YP_002993670.1| - 6e-08 32.4 2.1 6.1e-08 32.4 0.8 1.6 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|242398246|ref|YP_002993670.1| - 2.9e-05 24.0 0.0 3.7e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl_2 PF13533.6 gi|242398246|ref|YP_002993670.1| - 0.049 13.5 0.2 1.5 8.7 0.0 2.6 2 1 1 3 3 3 0 Biotin-lipoyl like DnaA_N PF11638.8 gi|242398246|ref|YP_002993670.1| - 0.14 12.0 0.0 0.39 10.5 0.0 1.7 1 1 1 2 2 2 0 DnaA N-terminal domain RNaseH_C PF09293.10 gi|242398246|ref|YP_002993670.1| - 0.14 12.5 0.6 2.2 8.6 0.6 2.2 1 1 0 1 1 1 0 T4 RNase H, C terminal MazG PF03819.17 gi|242398246|ref|YP_002993670.1| - 1.2 9.4 4.4 2 8.7 0.8 2.6 1 1 1 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain MatE PF01554.18 gi|242398248|ref|YP_002993672.1| - 2.5e-64 215.8 35.6 6.6e-38 129.9 9.2 2.8 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|242398248|ref|YP_002993672.1| - 9.4e-09 35.5 54.7 7.2e-07 29.4 24.6 4.8 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|242398248|ref|YP_002993672.1| - 5.5e-08 32.5 12.7 5.5e-08 32.5 12.7 3.1 2 1 1 3 3 3 3 Polysaccharide biosynthesis protein tRNA-synt_1 PF00133.22 gi|242398250|ref|YP_002993674.1| - 3.2e-65 220.6 2.1 1e-64 218.9 2.1 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|242398250|ref|YP_002993674.1| - 2.7e-29 102.1 0.7 7.1e-29 100.7 0.7 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|242398250|ref|YP_002993674.1| - 7.4e-23 80.9 0.5 3.3e-10 39.3 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|242398250|ref|YP_002993674.1| - 5.8e-10 39.0 0.3 1.8e-09 37.4 0.2 1.8 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|242398250|ref|YP_002993674.1| - 6.1e-09 35.6 1.1 0.00064 19.2 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|242398250|ref|YP_002993674.1| - 0.0012 17.9 0.0 0.045 12.7 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) AAA_14 PF13173.6 gi|242398251|ref|YP_002993675.1| - 0.0025 17.9 0.0 0.012 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|242398251|ref|YP_002993675.1| - 0.025 15.0 0.0 0.13 12.7 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF234 PF03008.14 gi|242398251|ref|YP_002993675.1| - 0.062 13.8 3.1 1.8 9.0 3.1 2.5 1 1 0 1 1 1 0 Archaea bacterial proteins of unknown function Y1_Tnp PF01797.16 gi|242398252|ref|YP_002993676.1| - 8.6e-37 125.9 0.0 1e-36 125.7 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like MoCF_biosynth PF00994.24 gi|242398252|ref|YP_002993676.1| - 0.041 13.6 0.0 0.074 12.7 0.0 1.4 1 0 0 1 1 1 0 Probable molybdopterin binding domain OrfB_IS605 PF01385.19 gi|242398253|ref|YP_002993677.1| - 7.7e-32 110.0 0.0 1.4e-31 109.2 0.0 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|242398253|ref|YP_002993677.1| - 4.1e-19 68.3 0.0 7.5e-19 67.4 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvX PF03652.15 gi|242398253|ref|YP_002993677.1| - 0.022 15.1 0.1 0.074 13.4 0.1 1.9 1 1 0 1 1 1 0 Holliday junction resolvase MAP65_ASE1 PF03999.12 gi|242398253|ref|YP_002993677.1| - 0.12 11.0 0.1 0.19 10.4 0.1 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) Ribosomal_L6 PF00347.23 gi|242398253|ref|YP_002993677.1| - 0.18 12.5 1.1 0.38 11.5 0.1 2.1 3 0 0 3 3 3 0 Ribosomal protein L6 DUF998 PF06197.13 gi|242398254|ref|YP_002993678.1| - 6.9e-13 48.6 18.2 8.3e-13 48.3 18.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Pyr_redox_2 PF07992.14 gi|242398255|ref|YP_002993679.1| - 2.1e-59 201.1 0.6 3.2e-59 200.6 0.4 1.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|242398255|ref|YP_002993679.1| - 3.7e-23 81.9 5.5 1.3e-16 60.9 1.0 3.8 4 0 0 4 4 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|242398255|ref|YP_002993679.1| - 1.2e-20 73.8 0.0 2.5e-20 72.8 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|242398255|ref|YP_002993679.1| - 1e-18 67.7 3.4 3.3e-16 59.4 0.3 2.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|242398255|ref|YP_002993679.1| - 1.4e-08 33.9 0.9 0.0022 16.8 0.0 4.1 3 1 1 4 4 4 1 HI0933-like protein DAO PF01266.24 gi|242398255|ref|YP_002993679.1| - 2.4e-07 30.7 0.3 0.11 12.0 0.0 3.8 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|242398255|ref|YP_002993679.1| - 2.9e-07 30.8 0.7 0.00025 21.5 0.2 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_2 PF00890.24 gi|242398255|ref|YP_002993679.1| - 1.4e-05 24.4 2.4 0.012 14.7 0.0 3.1 2 1 1 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|242398255|ref|YP_002993679.1| - 4e-05 23.8 0.0 0.0022 18.2 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|242398255|ref|YP_002993679.1| - 5.1e-05 22.5 0.1 0.015 14.3 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.22 gi|242398255|ref|YP_002993679.1| - 5.9e-05 22.3 4.3 0.094 11.8 0.1 3.0 2 1 1 3 3 3 2 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|242398255|ref|YP_002993679.1| - 0.00023 21.2 0.1 0.65 10.0 0.0 3.3 3 0 0 3 3 3 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|242398255|ref|YP_002993679.1| - 0.00045 19.6 0.0 0.63 9.3 0.0 2.8 2 1 1 3 3 3 1 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|242398255|ref|YP_002993679.1| - 0.00048 19.8 0.1 0.00088 18.9 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|242398255|ref|YP_002993679.1| - 0.00052 19.9 0.6 0.0016 18.4 0.1 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|242398255|ref|YP_002993679.1| - 0.00056 20.1 1.8 2.1 8.6 1.2 3.2 2 1 0 2 2 2 1 TrkA-N domain Trp_halogenase PF04820.14 gi|242398255|ref|YP_002993679.1| - 0.0013 17.7 0.2 0.038 12.8 0.1 2.2 2 0 0 2 2 2 1 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|242398255|ref|YP_002993679.1| - 0.0016 17.8 1.6 0.031 13.6 0.1 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|242398255|ref|YP_002993679.1| - 0.0025 17.1 0.4 0.036 13.3 0.0 2.8 3 0 0 3 3 3 1 Thi4 family Mqo PF06039.15 gi|242398255|ref|YP_002993679.1| - 0.044 12.3 0.0 0.077 11.5 0.0 1.3 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) GFO_IDH_MocA PF01408.22 gi|242398255|ref|YP_002993679.1| - 0.076 13.8 0.1 2.5 8.9 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|242398255|ref|YP_002993679.1| - 0.077 13.6 0.7 2.5 8.8 0.2 2.9 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|242398255|ref|YP_002993679.1| - 0.15 11.7 0.8 0.32 10.6 0.1 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|242398255|ref|YP_002993679.1| - 0.17 12.0 3.6 0.25 11.4 0.2 2.4 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|242398255|ref|YP_002993679.1| - 0.19 12.0 0.5 1.3 9.3 0.1 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain FAD_oxidored PF12831.7 gi|242398255|ref|YP_002993679.1| - 0.44 9.8 2.4 2.2 7.5 0.0 2.6 2 1 0 2 2 2 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|242398255|ref|YP_002993679.1| - 0.62 9.3 3.6 3.6 6.7 0.2 3.0 3 1 0 3 3 3 0 FAD binding domain DUF1464 PF07318.12 gi|242398256|ref|YP_002993680.1| - 4.2e-132 440.3 1.6 4.8e-132 440.1 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) B12-binding PF02310.19 gi|242398256|ref|YP_002993680.1| - 0.016 15.2 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain NMD3 PF04981.13 gi|242398257|ref|YP_002993681.1| - 3.6e-59 200.2 2.0 3.6e-59 200.2 2.0 1.5 2 0 0 2 2 2 1 NMD3 family DUF555 PF04475.12 gi|242398257|ref|YP_002993681.1| - 0.04 14.2 0.1 0.12 12.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF555) EFP PF01132.20 gi|242398257|ref|YP_002993681.1| - 0.042 13.9 0.1 0.12 12.4 0.1 1.8 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain GFA PF04828.14 gi|242398257|ref|YP_002993681.1| - 0.063 13.6 0.4 22 5.5 0.0 3.3 3 0 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Tudor_RapA PF18337.1 gi|242398257|ref|YP_002993681.1| - 0.1 12.8 0.1 9.1 6.5 0.0 2.8 2 0 0 2 2 2 0 RapA N-terminal Tudor like domain Rotamase_2 PF13145.6 gi|242398257|ref|YP_002993681.1| - 0.11 13.4 0.1 0.37 11.6 0.0 1.8 2 0 0 2 2 2 0 PPIC-type PPIASE domain zf-ribbon_3 PF13248.6 gi|242398257|ref|YP_002993681.1| - 0.57 9.7 4.7 13 5.3 0.0 3.7 4 0 0 4 4 4 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|242398257|ref|YP_002993681.1| - 0.7 10.1 3.8 7.4 6.8 0.2 2.9 3 0 0 3 3 3 0 Zinc ribbon domain Rpr2 PF04032.16 gi|242398257|ref|YP_002993681.1| - 0.71 10.2 4.9 17 5.8 0.2 3.1 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|242398257|ref|YP_002993681.1| - 0.72 9.9 5.8 18 5.5 3.4 3.0 2 1 0 2 2 2 0 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|242398257|ref|YP_002993681.1| - 1.2 9.4 4.4 19 5.5 0.1 2.9 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like DUF424 PF04242.13 gi|242398258|ref|YP_002993682.1| - 3e-31 107.5 0.0 3.4e-31 107.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Peptidase_S8 PF00082.22 gi|242398259|ref|YP_002993683.1| - 5.4e-29 101.4 0.0 3.1e-28 98.9 0.0 2.1 1 1 0 1 1 1 1 Subtilase family CARDB PF07705.11 gi|242398259|ref|YP_002993683.1| - 6.4e-08 32.8 5.8 5.5e-06 26.6 0.6 3.5 3 0 0 3 3 3 2 CARDB PPC PF04151.15 gi|242398259|ref|YP_002993683.1| - 1.2e-07 32.8 5.0 1e-06 29.7 4.0 3.4 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain fn3_5 PF06280.12 gi|242398259|ref|YP_002993683.1| - 0.055 14.2 1.2 0.19 12.4 0.0 2.6 3 0 0 3 3 3 0 Fn3-like domain NPCBM_assoc PF10633.9 gi|242398259|ref|YP_002993683.1| - 0.14 12.4 5.1 10 6.5 0.0 4.6 4 1 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Peptidase_M20 PF01546.28 gi|242398260|ref|YP_002993684.1| - 1.3e-37 129.5 0.2 2e-37 128.9 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|242398260|ref|YP_002993684.1| - 4.8e-12 45.8 0.1 1.3e-11 44.3 0.1 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain O_anti_polymase PF01901.16 gi|242398261|ref|YP_002993685.1| - 4.6e-19 68.9 31.2 9e-19 67.9 31.2 1.6 1 1 0 1 1 1 1 Putative O-antigen polymerase PMT_2 PF13231.6 gi|242398262|ref|YP_002993686.1| - 7.7e-11 42.5 18.2 3.2e-10 40.4 18.2 2.1 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Pec_lyase PF09492.10 gi|242398262|ref|YP_002993686.1| - 3.1e-06 26.7 1.8 0.021 14.1 0.1 2.2 2 0 0 2 2 2 2 Pectic acid lyase Prenyltrans PF00432.21 gi|242398262|ref|YP_002993686.1| - 3.8e-05 23.3 0.0 1.8 8.4 0.0 3.6 3 0 0 3 3 3 2 Prenyltransferase and squalene oxidase repeat Glyco_hydro_88 PF07470.13 gi|242398262|ref|YP_002993686.1| - 9.9e-05 21.6 3.6 0.075 12.1 1.3 2.4 2 0 0 2 2 2 2 Glycosyl Hydrolase Family 88 SQHop_cyclase_C PF13243.6 gi|242398262|ref|YP_002993686.1| - 0.00024 20.3 0.1 0.00079 18.6 0.0 1.8 2 0 0 2 2 2 1 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 gi|242398262|ref|YP_002993686.1| - 0.002 17.3 0.6 0.012 14.8 0.1 2.4 1 1 2 3 3 3 2 Squalene-hopene cyclase N-terminal domain TED_complement PF07678.14 gi|242398262|ref|YP_002993686.1| - 0.0091 15.1 0.2 0.095 11.7 0.0 2.1 1 1 1 2 2 2 1 A-macroglobulin TED domain LANC_like PF05147.13 gi|242398262|ref|YP_002993686.1| - 0.027 13.0 0.1 1.8 7.1 0.0 2.4 2 0 0 2 2 2 0 Lanthionine synthetase C-like protein Glyco_hydro_127 PF07944.12 gi|242398262|ref|YP_002993686.1| - 0.068 11.6 0.2 0.3 9.5 0.2 1.8 1 1 0 1 1 1 0 Beta-L-arabinofuranosidase, GH127 PPDK_N PF01326.19 gi|242398263|ref|YP_002993687.1| - 3.4e-116 388.1 4.3 4.8e-116 387.6 4.3 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|242398263|ref|YP_002993687.1| - 1.3e-95 319.9 0.2 3.2e-95 318.6 0.0 1.7 2 0 0 2 2 2 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|242398263|ref|YP_002993687.1| - 6.7e-28 96.2 1.8 1.9e-27 94.8 1.8 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Pep_deformylase PF01327.21 gi|242398263|ref|YP_002993687.1| - 0.023 14.3 0.8 0.061 12.9 0.0 2.1 3 0 0 3 3 3 0 Polypeptide deformylase OrfB_IS605 PF01385.19 gi|242398264|ref|YP_002993688.1| - 1.9e-25 89.4 0.0 2.7e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|242398264|ref|YP_002993688.1| - 1.8e-23 82.2 2.9 3.4e-23 81.3 2.9 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|242398264|ref|YP_002993688.1| - 0.011 15.3 4.6 0.044 13.3 3.1 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Ribosomal_L37ae PF01780.19 gi|242398264|ref|YP_002993688.1| - 0.026 14.6 1.4 0.061 13.4 0.3 2.0 2 0 0 2 2 2 0 Ribosomal L37ae protein family RuvX PF03652.15 gi|242398264|ref|YP_002993688.1| - 0.051 13.9 0.0 0.093 13.1 0.0 1.4 1 0 0 1 1 1 0 Holliday junction resolvase Bac_rhamnosid PF05592.11 gi|242398264|ref|YP_002993688.1| - 0.07 13.1 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial alpha-L-rhamnosidase concanavalin-like domain C1_2 PF03107.16 gi|242398264|ref|YP_002993688.1| - 0.22 11.9 3.4 0.48 10.8 3.4 1.5 1 0 0 1 1 1 0 C1 domain zf-RRN7 PF11781.8 gi|242398264|ref|YP_002993688.1| - 0.27 11.0 2.1 1 9.1 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 A2L_zn_ribbon PF08792.10 gi|242398264|ref|YP_002993688.1| - 1.3 8.8 8.1 1.5 8.6 4.8 2.7 2 1 0 2 2 2 0 A2L zinc ribbon domain MatE PF01554.18 gi|242398265|ref|YP_002993689.1| - 7.6e-62 207.7 26.6 8.2e-35 119.8 9.4 2.7 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|242398265|ref|YP_002993689.1| - 5.3e-10 39.5 16.3 6.6e-09 36.0 4.8 4.1 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain PhoU PF01895.19 gi|242398266|ref|YP_002993690.1| - 2.6e-12 47.0 8.6 3.9e-11 43.2 0.5 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|242398266|ref|YP_002993690.1| - 4e-08 33.0 0.1 1.5e-07 31.1 0.1 2.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin SRI PF08236.11 gi|242398266|ref|YP_002993690.1| - 0.0011 19.1 0.1 0.0027 17.8 0.1 1.7 1 0 0 1 1 1 1 SRI (Set2 Rpb1 interacting) domain Asparaginase_2 PF01112.18 gi|242398267|ref|YP_002993691.1| - 5.8e-91 304.7 3.7 6.9e-91 304.5 3.7 1.0 1 0 0 1 1 1 1 Asparaginase DUF1612 PF07756.12 gi|242398267|ref|YP_002993691.1| - 0.064 13.5 0.1 22 5.3 0.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1612) MFS_1 PF07690.16 gi|242398268|ref|YP_002993692.1| - 4.7e-48 163.9 56.4 2.4e-42 145.1 49.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|242398268|ref|YP_002993692.1| - 3.5e-07 29.0 17.1 4.6e-07 28.6 17.1 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|242398268|ref|YP_002993692.1| - 2.4e-05 23.4 33.7 0.0001 21.3 12.6 2.2 1 1 1 2 2 2 2 MFS_1 like family PUCC PF03209.15 gi|242398268|ref|YP_002993692.1| - 4.2e-05 22.7 8.1 4.2e-05 22.7 8.1 2.3 1 1 1 2 2 2 1 PUCC protein DUF647 PF04884.14 gi|242398268|ref|YP_002993692.1| - 0.097 12.3 0.8 0.16 11.6 0.1 1.7 2 0 0 2 2 2 0 Vitamin B6 photo-protection and homoeostasis Radical_SAM PF04055.21 gi|242398269|ref|YP_002993693.1| - 1.1e-11 45.3 0.2 9.8e-11 42.3 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily mRNA_decap_C PF16741.5 gi|242398269|ref|YP_002993693.1| - 0.13 11.6 0.3 0.83 9.0 0.0 2.2 2 0 0 2 2 2 0 mRNA-decapping enzyme C-terminus TPR_19 PF14559.6 gi|242398270|ref|YP_002993694.1| - 0.00056 20.4 0.0 0.0025 18.3 0.0 2.1 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|242398270|ref|YP_002993694.1| - 0.73 10.2 0.0 0.73 10.2 0.0 3.4 4 1 0 4 4 4 0 Tetratricopeptide repeat RIO1 PF01163.22 gi|242398271|ref|YP_002993695.1| - 8.5e-47 159.2 0.1 1.1e-46 158.9 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|242398271|ref|YP_002993695.1| - 1.2e-24 86.3 0.0 2.6e-24 85.2 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal Pkinase PF00069.25 gi|242398271|ref|YP_002993695.1| - 2.2e-06 27.2 1.8 1.3e-05 24.7 1.8 1.9 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|242398271|ref|YP_002993695.1| - 5.6e-06 26.5 0.1 0.017 15.0 0.0 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|242398271|ref|YP_002993695.1| - 0.0012 17.7 0.0 0.0018 17.1 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase Opacity PF02462.15 gi|242398271|ref|YP_002993695.1| - 0.025 14.7 0.0 0.044 13.9 0.0 1.4 1 0 0 1 1 1 0 Opacity family porin protein La PF05383.17 gi|242398271|ref|YP_002993695.1| - 0.069 13.2 0.0 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 La domain Pkinase_Tyr PF07714.17 gi|242398271|ref|YP_002993695.1| - 0.11 11.8 0.2 0.32 10.2 0.2 1.8 1 1 0 1 1 1 0 Protein tyrosine kinase MFS_1 PF07690.16 gi|242398272|ref|YP_002993696.1| - 5.7e-51 173.5 46.9 2.7e-44 151.5 29.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|242398272|ref|YP_002993696.1| - 4.1e-10 39.1 26.8 4.4e-08 32.4 6.2 3.2 2 2 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.20 gi|242398272|ref|YP_002993696.1| - 0.0081 14.5 17.4 0.096 11.0 0.1 3.3 2 2 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family DUF5090 PF17009.5 gi|242398272|ref|YP_002993696.1| - 3.1 7.7 8.5 0.12 12.3 1.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5090) Fer4_22 PF17179.4 gi|242398273|ref|YP_002993697.1| - 1.9e-27 95.9 13.1 3.3e-27 95.2 10.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242398273|ref|YP_002993697.1| - 2.4e-06 27.6 9.9 0.0021 18.2 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|242398273|ref|YP_002993697.1| - 7e-06 26.5 13.2 0.004 17.7 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|242398273|ref|YP_002993697.1| - 8.8e-06 26.2 10.0 0.016 15.8 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|242398273|ref|YP_002993697.1| - 2.2e-05 24.8 12.1 4.5e-05 23.8 11.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|242398273|ref|YP_002993697.1| - 6.9e-05 22.5 12.7 0.013 15.3 3.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|242398273|ref|YP_002993697.1| - 7.8e-05 22.5 13.7 0.034 14.2 4.7 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|242398273|ref|YP_002993697.1| - 0.00045 20.3 15.3 0.015 15.4 2.5 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|242398273|ref|YP_002993697.1| - 0.00057 20.2 1.5 0.00057 20.2 1.5 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|242398273|ref|YP_002993697.1| - 0.0036 18.2 9.2 0.16 12.9 0.8 2.9 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|242398273|ref|YP_002993697.1| - 0.013 15.7 13.5 0.24 11.6 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|242398273|ref|YP_002993697.1| - 0.037 14.1 18.5 0.073 13.2 2.7 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|242398273|ref|YP_002993697.1| - 0.057 13.6 2.5 1.8 8.8 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain NAD_binding_1 PF00175.21 gi|242398274|ref|YP_002993698.1| - 2.8e-14 53.7 0.0 4.4e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.9 gi|242398274|ref|YP_002993698.1| - 1.5e-12 47.1 1.6 2.4e-12 46.4 1.6 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|242398274|ref|YP_002993698.1| - 6.4e-09 36.1 0.0 9.2e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|242398274|ref|YP_002993698.1| - 0.00022 21.4 0.0 0.08 13.1 0.0 2.2 1 1 1 2 2 2 2 Ferric reductase NAD binding domain FAD_binding_8 PF08022.12 gi|242398274|ref|YP_002993698.1| - 0.0055 16.8 0.2 0.051 13.7 0.1 2.5 2 1 0 2 2 2 1 FAD-binding domain Oxidored_q6 PF01058.22 gi|242398275|ref|YP_002993699.1| - 6.1e-27 94.0 0.0 9.6e-27 93.4 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit eIF2_C PF09173.11 gi|242398275|ref|YP_002993699.1| - 0.0034 17.6 0.0 0.0087 16.3 0.0 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal NiFeSe_Hases PF00374.19 gi|242398276|ref|YP_002993700.1| - 2.1e-25 89.6 0.4 2.7e-11 43.1 0.0 3.1 1 1 1 3 3 3 3 Nickel-dependent hydrogenase HycI PF01750.18 gi|242398277|ref|YP_002993701.1| - 5.7e-20 71.4 0.7 6.7e-20 71.2 0.7 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Methyltrn_RNA_3 PF02598.17 gi|242398278|ref|YP_002993702.1| - 3e-51 174.6 0.0 3.5e-51 174.4 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|242398278|ref|YP_002993702.1| - 0.00021 21.5 0.0 0.32 11.1 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family Ribosomal_L3 PF00297.22 gi|242398279|ref|YP_002993703.1| - 1.1e-89 301.0 0.3 1.2e-89 300.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|242398280|ref|YP_002993704.1| - 2.6e-48 164.3 0.5 2.9e-48 164.1 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF2149 PF09919.9 gi|242398280|ref|YP_002993704.1| - 0.029 14.6 0.1 0.053 13.8 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) Ribosomal_L23 PF00276.20 gi|242398281|ref|YP_002993705.1| - 1.2e-18 67.2 10.1 1.3e-17 63.9 10.1 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.17 gi|242398281|ref|YP_002993705.1| - 0.054 13.3 0.4 0.087 12.7 0.4 1.4 1 1 0 1 1 1 0 Sulfurtransferase TusA Ribosomal_L2_C PF03947.18 gi|242398282|ref|YP_002993706.1| - 8.5e-43 145.6 0.8 1.5e-42 144.7 0.8 1.4 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|242398282|ref|YP_002993706.1| - 5.7e-21 74.3 0.0 1.3e-20 73.1 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|242398283|ref|YP_002993707.1| - 1.1e-34 118.1 0.9 1.5e-34 117.7 0.9 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.17 gi|242398283|ref|YP_002993707.1| - 0.0058 17.1 0.4 0.0097 16.4 0.4 1.4 1 0 0 1 1 1 1 bZIP Maf transcription factor Sas10 PF09368.10 gi|242398283|ref|YP_002993707.1| - 0.012 16.1 1.9 0.031 14.8 1.9 1.7 1 0 0 1 1 1 0 Sas10 C-terminal domain pPIWI_RE_Z PF18155.1 gi|242398283|ref|YP_002993707.1| - 0.016 15.1 0.0 0.02 14.7 0.0 1.1 1 0 0 1 1 1 0 pPIWI RE three-gene island domain Z Myb_DNA-bind_7 PF15963.5 gi|242398283|ref|YP_002993707.1| - 0.13 12.2 0.3 0.19 11.6 0.3 1.3 1 0 0 1 1 1 0 Myb DNA-binding like Ribosomal_L22 PF00237.19 gi|242398284|ref|YP_002993708.1| - 1.3e-30 105.6 0.0 1.6e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Sda PF08970.10 gi|242398284|ref|YP_002993708.1| - 0.25 11.1 1.8 21 4.9 0.0 3.0 4 0 0 4 4 4 0 Sporulation inhibitor A Ribosomal_S3_C PF00189.20 gi|242398285|ref|YP_002993709.1| - 5.8e-24 84.4 1.1 9.7e-24 83.7 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|242398285|ref|YP_002993709.1| - 4.5e-15 55.2 0.6 1.1e-14 54.0 0.6 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|242398285|ref|YP_002993709.1| - 0.032 14.1 2.6 0.061 13.2 0.2 2.6 3 0 0 3 3 3 0 KH domain Mucin_bdg PF03272.13 gi|242398285|ref|YP_002993709.1| - 0.058 13.4 0.0 0.089 12.8 0.0 1.3 1 0 0 1 1 1 0 Putative mucin or carbohydrate-binding module Ribosomal_L29 PF00831.23 gi|242398286|ref|YP_002993710.1| - 7.8e-17 61.0 5.2 8.9e-17 60.8 5.2 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein Exonuc_X-T_C PF08411.10 gi|242398286|ref|YP_002993710.1| - 0.032 13.3 0.2 0.093 11.8 0.0 1.7 1 1 1 2 2 2 0 Exonuclease C-terminal SUI1 PF01253.22 gi|242398287|ref|YP_002993711.1| - 1.3e-19 70.5 0.4 1.5e-19 70.3 0.4 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|242398287|ref|YP_002993711.1| - 0.00058 20.1 0.3 0.00082 19.6 0.3 1.3 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) UPF0086 PF01868.16 gi|242398288|ref|YP_002993712.1| - 2.4e-22 78.7 0.1 3.1e-22 78.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|242398289|ref|YP_002993713.1| - 7.9e-24 83.5 0.8 1e-23 83.2 0.8 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|242398289|ref|YP_002993713.1| - 0.02 15.3 0.0 0.039 14.3 0.0 1.6 1 0 0 1 1 1 0 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|242398290|ref|YP_002993714.1| - 1.3e-35 122.1 1.4 1.6e-35 121.8 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|242398291|ref|YP_002993715.1| - 5.9e-36 122.8 0.5 7.2e-36 122.5 0.5 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|242398291|ref|YP_002993715.1| - 1.8e-10 40.4 4.7 1.8e-10 40.4 4.7 1.7 2 0 0 2 2 2 1 KOW motif hSH3 PF14603.6 gi|242398291|ref|YP_002993715.1| - 0.078 13.4 0.0 0.22 12.0 0.0 1.7 1 1 1 2 2 2 0 Helically-extended SH3 domain ribosomal_L24 PF17136.4 gi|242398291|ref|YP_002993715.1| - 0.13 12.7 1.1 0.3 11.5 0.4 2.1 1 1 1 2 2 2 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 Ribosomal_S4e PF00900.20 gi|242398292|ref|YP_002993716.1| - 4.2e-24 84.3 0.1 1.5e-23 82.5 0.1 1.8 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|242398292|ref|YP_002993716.1| - 1.3e-16 60.4 2.9 2.1e-16 59.7 2.9 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|242398292|ref|YP_002993716.1| - 5.7e-10 38.8 1.3 7.6e-10 38.3 0.2 1.8 2 0 0 2 2 2 1 S4 domain S4_2 PF13275.6 gi|242398292|ref|YP_002993716.1| - 0.011 15.5 0.1 0.028 14.3 0.1 1.7 1 0 0 1 1 1 0 S4 domain KOW PF00467.29 gi|242398292|ref|YP_002993716.1| - 0.033 14.1 2.3 0.099 12.6 2.3 1.9 1 0 0 1 1 1 0 KOW motif DUF4920 PF16267.5 gi|242398292|ref|YP_002993716.1| - 0.043 13.8 0.0 0.52 10.3 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4920) Ribosomal_L5_C PF00673.21 gi|242398293|ref|YP_002993717.1| - 1.2e-25 89.5 0.0 2.8e-25 88.3 0.0 1.6 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|242398293|ref|YP_002993717.1| - 2.4e-21 75.8 0.3 4e-21 75.1 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|242398294|ref|YP_002993718.1| - 2e-08 33.9 4.8 2.4e-08 33.6 4.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF2039 PF10217.9 gi|242398294|ref|YP_002993718.1| - 0.22 11.9 2.1 2.5 8.5 0.0 2.0 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2039) Med16 PF11635.8 gi|242398294|ref|YP_002993718.1| - 0.38 8.6 0.6 0.42 8.5 0.6 1.0 1 0 0 1 1 1 0 Mediator complex subunit 16 Ribosomal_S8 PF00410.19 gi|242398295|ref|YP_002993719.1| - 2.9e-28 98.4 0.0 3.6e-28 98.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|242398296|ref|YP_002993720.1| - 1.3e-33 115.5 6.5 2e-17 63.6 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_L32e PF01655.18 gi|242398297|ref|YP_002993721.1| - 1.6e-41 141.0 0.4 2e-41 140.7 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|242398298|ref|YP_002993722.1| - 6.1e-56 188.5 16.1 6.8e-56 188.3 16.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L5e PF17144.4 gi|242398299|ref|YP_002993723.1| - 1.2e-27 97.0 0.4 1.3e-15 57.8 0.0 2.7 2 1 1 3 3 3 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|242398299|ref|YP_002993723.1| - 1.8e-11 44.8 0.5 3.4e-11 43.9 0.5 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|242398299|ref|YP_002993723.1| - 3.6e-08 33.8 0.0 5.2e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5 PF00333.20 gi|242398300|ref|YP_002993724.1| - 6.5e-22 77.3 1.8 1.4e-21 76.3 1.8 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|242398300|ref|YP_002993724.1| - 1.1e-20 72.9 0.1 2.2e-20 71.9 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|242398301|ref|YP_002993725.1| - 3.5e-14 52.4 0.3 5.3e-14 51.8 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e zf-SCNM1 PF15803.5 gi|242398301|ref|YP_002993725.1| - 0.033 13.8 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger of sodium channel modifier 1 Ribosomal_L27A PF00828.19 gi|242398302|ref|YP_002993726.1| - 2.6e-19 70.2 0.7 3.8e-19 69.6 0.7 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|242398303|ref|YP_002993727.1| - 5.3e-71 239.4 16.7 6.4e-71 239.1 16.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|242398303|ref|YP_002993727.1| - 1.4e-12 47.2 0.1 5.8e-12 45.2 0.1 2.2 1 0 0 1 1 1 1 Plug domain of Sec61p AAA_17 PF13207.6 gi|242398304|ref|YP_002993728.1| - 3.9e-33 114.8 0.1 5.9e-33 114.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|242398304|ref|YP_002993728.1| - 7.6e-10 39.4 0.1 2.6e-09 37.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|242398304|ref|YP_002993728.1| - 2.1e-05 24.5 1.8 0.00028 20.9 0.3 2.7 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|242398304|ref|YP_002993728.1| - 0.00093 18.5 0.0 0.0016 17.7 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.29 gi|242398304|ref|YP_002993728.1| - 0.0014 19.1 0.2 0.0067 16.9 0.0 2.1 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|242398304|ref|YP_002993728.1| - 0.0014 18.9 0.1 0.0027 18.0 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|242398304|ref|YP_002993728.1| - 0.0018 18.7 0.2 0.0035 17.8 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|242398304|ref|YP_002993728.1| - 0.0071 15.8 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_14 PF13173.6 gi|242398304|ref|YP_002993728.1| - 0.0079 16.2 0.3 0.036 14.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|242398304|ref|YP_002993728.1| - 0.014 15.3 0.6 0.038 13.9 0.3 1.9 1 1 0 1 1 1 0 NTPase MeaB PF03308.16 gi|242398304|ref|YP_002993728.1| - 0.02 13.9 0.1 0.042 12.8 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|242398304|ref|YP_002993728.1| - 0.02 15.1 1.7 0.14 12.4 1.7 2.1 1 1 0 1 1 1 0 AAA domain PAS_9 PF13426.7 gi|242398304|ref|YP_002993728.1| - 0.023 15.0 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 PAS domain MMR_HSR1 PF01926.23 gi|242398304|ref|YP_002993728.1| - 0.033 14.3 0.1 0.13 12.3 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|242398304|ref|YP_002993728.1| - 0.054 13.7 0.3 0.079 13.1 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|242398304|ref|YP_002993728.1| - 0.071 13.0 0.0 0.92 9.4 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|242398304|ref|YP_002993728.1| - 0.079 12.2 0.4 0.26 10.6 0.0 1.9 2 1 0 2 2 2 0 Zeta toxin APS_kinase PF01583.20 gi|242398304|ref|YP_002993728.1| - 0.086 12.7 0.8 0.45 10.4 0.1 2.3 2 1 0 2 2 2 0 Adenylylsulphate kinase Viral_helicase1 PF01443.18 gi|242398304|ref|YP_002993728.1| - 0.086 12.6 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.27 gi|242398304|ref|YP_002993728.1| - 0.089 13.3 0.0 0.14 12.7 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|242398304|ref|YP_002993728.1| - 0.98 9.1 4.5 0.53 10.0 0.3 2.4 2 1 1 3 3 3 0 AAA domain EMC3_TMCO1 PF01956.16 gi|242398305|ref|YP_002993729.1| - 8.5e-28 97.2 6.3 1e-27 97.0 6.3 1.0 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|242398305|ref|YP_002993729.1| - 1.1e-06 28.7 1.2 1.4e-06 28.3 1.2 1.2 1 0 0 1 1 1 1 60Kd inner membrane protein DUF4199 PF13858.6 gi|242398305|ref|YP_002993729.1| - 0.00021 21.7 0.9 0.0012 19.3 0.6 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF4199) DUF2208 PF09973.9 gi|242398305|ref|YP_002993729.1| - 0.012 15.3 1.1 0.016 14.8 1.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) DIOX_N PF14226.6 gi|242398305|ref|YP_002993729.1| - 0.014 16.1 0.6 0.025 15.3 0.6 1.3 1 0 0 1 1 1 0 non-haem dioxygenase in morphine synthesis N-terminal OmpH PF03938.14 gi|242398305|ref|YP_002993729.1| - 0.25 11.7 12.1 0.37 11.1 12.1 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Swi5 PF07061.11 gi|242398305|ref|YP_002993729.1| - 1.1 9.4 7.0 1.5 8.9 7.0 1.2 1 0 0 1 1 1 0 Swi5 Ribosomal_L34e PF01199.18 gi|242398306|ref|YP_002993730.1| - 4.1e-22 78.3 3.3 4.8e-22 78.1 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DZR PF12773.7 gi|242398306|ref|YP_002993730.1| - 0.0019 18.2 0.4 0.0028 17.7 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Sgf11 PF08209.11 gi|242398306|ref|YP_002993730.1| - 0.06 12.9 2.2 3.2 7.4 0.1 2.4 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cytidylate_kin2 PF13189.6 gi|242398307|ref|YP_002993731.1| - 5.3e-26 91.8 0.8 3.1e-24 86.1 0.8 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|242398307|ref|YP_002993731.1| - 1.2e-14 55.0 0.0 1.5e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|242398307|ref|YP_002993731.1| - 9.5e-14 51.6 4.3 1.4e-08 34.7 1.2 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|242398307|ref|YP_002993731.1| - 1.1e-12 48.5 0.0 2.3e-12 47.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|242398307|ref|YP_002993731.1| - 0.00042 20.5 0.4 0.025 14.7 0.4 2.1 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|242398307|ref|YP_002993731.1| - 0.00075 19.2 0.8 0.45 10.2 0.0 2.2 1 1 1 2 2 2 2 Dephospho-CoA kinase dNK PF01712.19 gi|242398307|ref|YP_002993731.1| - 0.00093 19.1 0.5 0.29 10.9 0.0 2.9 1 1 1 2 2 2 2 Deoxynucleoside kinase ADK PF00406.22 gi|242398307|ref|YP_002993731.1| - 0.0014 18.7 0.0 0.0023 18.1 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.6 gi|242398307|ref|YP_002993731.1| - 0.0063 16.8 0.3 0.038 14.2 0.0 1.9 1 1 1 2 2 2 1 AAA domain SinI PF08671.10 gi|242398307|ref|YP_002993731.1| - 0.013 15.3 0.7 0.71 9.7 0.2 2.4 2 0 0 2 2 2 0 Anti-repressor SinI PRK PF00485.18 gi|242398307|ref|YP_002993731.1| - 0.015 15.1 0.3 0.41 10.3 0.0 2.1 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|242398307|ref|YP_002993731.1| - 0.13 11.4 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain G-alpha PF00503.20 gi|242398307|ref|YP_002993731.1| - 0.16 11.1 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Ribosomal_L14e PF01929.17 gi|242398308|ref|YP_002993732.1| - 6.6e-05 23.3 0.0 9.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.29 gi|242398308|ref|YP_002993732.1| - 0.00042 20.2 3.5 0.00066 19.5 3.5 1.3 1 0 0 1 1 1 1 KOW motif XisI PF08869.11 gi|242398308|ref|YP_002993732.1| - 0.031 14.6 0.0 0.035 14.5 0.0 1.1 1 0 0 1 1 1 0 XisI protein adh_short_C2 PF13561.6 gi|242398309|ref|YP_002993733.1| - 7.1e-69 231.9 0.0 8.6e-69 231.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|242398309|ref|YP_002993733.1| - 4.2e-58 196.0 0.3 5e-58 195.8 0.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|242398309|ref|YP_002993733.1| - 1.8e-12 47.5 0.1 2.6e-12 47.0 0.1 1.2 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 gi|242398309|ref|YP_002993733.1| - 4.1e-05 22.9 0.3 5.5e-05 22.4 0.3 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|242398309|ref|YP_002993733.1| - 0.00027 20.5 0.3 0.00065 19.2 0.3 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|242398309|ref|YP_002993733.1| - 0.00028 20.8 2.4 0.00049 20.0 2.3 1.5 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 gi|242398309|ref|YP_002993733.1| - 0.0008 18.9 0.0 0.0013 18.2 0.0 1.4 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|242398309|ref|YP_002993733.1| - 0.0016 17.5 0.7 0.0028 16.7 0.8 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 gi|242398309|ref|YP_002993733.1| - 0.0041 17.4 0.4 0.0082 16.4 0.4 1.4 1 0 0 1 1 1 1 TrkA-N domain ADH_zinc_N PF00107.26 gi|242398309|ref|YP_002993733.1| - 0.0068 16.4 0.3 0.012 15.6 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_25 PF13649.6 gi|242398309|ref|YP_002993733.1| - 0.011 16.4 0.0 0.029 15.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Mannitol_dh PF01232.23 gi|242398309|ref|YP_002993733.1| - 0.019 15.2 0.0 0.031 14.4 0.0 1.3 1 0 0 1 1 1 0 Mannitol dehydrogenase Rossmann domain RmlD_sub_bind PF04321.17 gi|242398309|ref|YP_002993733.1| - 0.03 13.4 0.1 0.043 12.9 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Methyltransf_11 PF08241.12 gi|242398309|ref|YP_002993733.1| - 0.049 14.3 0.1 0.75 10.5 0.2 2.5 2 1 0 2 2 2 0 Methyltransferase domain THF_DHG_CYH_C PF02882.19 gi|242398309|ref|YP_002993733.1| - 0.063 12.6 0.2 0.46 9.8 0.0 2.4 3 1 0 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AdoHcyase_NAD PF00670.21 gi|242398309|ref|YP_002993733.1| - 0.063 13.3 0.4 0.11 12.5 0.4 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain B12-binding PF02310.19 gi|242398309|ref|YP_002993733.1| - 0.078 13.0 0.5 0.41 10.7 0.0 2.2 2 0 0 2 2 2 0 B12 binding domain DFP PF04127.15 gi|242398309|ref|YP_002993733.1| - 0.13 12.1 0.9 0.42 10.4 0.9 1.8 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein adh_short PF00106.25 gi|242398310|ref|YP_002993734.1| - 7e-41 139.8 0.0 8.7e-41 139.5 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|242398310|ref|YP_002993734.1| - 3.5e-31 108.6 0.0 5.7e-31 107.9 0.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|242398310|ref|YP_002993734.1| - 5.4e-14 52.5 0.1 7.2e-14 52.1 0.1 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|242398310|ref|YP_002993734.1| - 0.00014 21.8 0.3 0.00016 21.6 0.3 1.3 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|242398310|ref|YP_002993734.1| - 0.00032 20.2 0.1 0.00053 19.5 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Exog_C PF18026.1 gi|242398310|ref|YP_002993734.1| - 0.015 15.4 0.1 0.047 13.8 0.1 1.8 1 0 0 1 1 1 0 Endo/exonuclease (EXOG) C-terminal domain NmrA PF05368.13 gi|242398310|ref|YP_002993734.1| - 0.044 13.3 0.1 0.13 11.8 0.2 1.7 2 0 0 2 2 2 0 NmrA-like family F420_oxidored PF03807.17 gi|242398310|ref|YP_002993734.1| - 0.11 13.1 0.1 0.19 12.3 0.1 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Spheroidin PF05541.12 gi|242398310|ref|YP_002993734.1| - 0.15 9.9 0.0 0.17 9.7 0.0 1.0 1 0 0 1 1 1 0 Entomopoxvirus spheroidin protein HHH_2 PF12826.7 gi|242398310|ref|YP_002993734.1| - 0.21 11.7 3.6 9.6 6.4 0.1 3.7 3 2 1 4 4 4 0 Helix-hairpin-helix motif Glyco_hydro_16 PF00722.21 gi|242398312|ref|YP_002993736.1| - 2.1e-40 138.1 0.3 3.3e-40 137.4 0.3 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 SKN1 PF03935.15 gi|242398312|ref|YP_002993736.1| - 4e-21 75.0 3.2 1.7e-10 39.9 0.9 2.0 2 0 0 2 2 2 2 Beta-glucan synthesis-associated protein (SKN1) IP_trans PF02121.18 gi|242398314|ref|YP_002993738.1| - 0.0043 16.7 0.1 0.0046 16.6 0.1 1.0 1 0 0 1 1 1 1 Phosphatidylinositol transfer protein VAPB_antitox PF02697.14 gi|242398314|ref|YP_002993738.1| - 0.0049 17.6 5.6 0.0061 17.3 5.6 1.2 1 0 0 1 1 1 1 Putative antitoxin RHH_1 PF01402.21 gi|242398314|ref|YP_002993738.1| - 0.0087 16.0 1.7 0.13 12.2 0.0 2.6 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family ArsR PF09824.9 gi|242398314|ref|YP_002993738.1| - 0.089 12.4 2.6 0.07 12.7 1.2 1.5 1 1 1 2 2 2 0 ArsR transcriptional regulator Glyco_hydro_1 PF00232.18 gi|242398315|ref|YP_002993739.1| - 4e-66 223.3 2.3 1.2e-56 192.0 0.8 2.7 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Glyco_hydro_cc PF11790.8 gi|242398316|ref|YP_002993740.1| - 0.0003 20.4 0.3 0.00082 19.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl hydrolase catalytic core Glyco_hydro_72 PF03198.14 gi|242398316|ref|YP_002993740.1| - 0.032 13.5 0.0 2.8 7.1 0.1 2.3 2 0 0 2 2 2 0 Glucanosyltransferase KorB PF08535.10 gi|242398318|ref|YP_002993742.1| - 0.076 13.1 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 KorB domain DUF2808 PF10989.8 gi|242398319|ref|YP_002993743.1| - 0.075 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2808) Vps51 PF08700.11 gi|242398319|ref|YP_002993743.1| - 0.13 12.3 0.2 13 6.0 0.0 2.4 2 0 0 2 2 2 0 Vps51/Vps67 SBP_bac_5 PF00496.22 gi|242398320|ref|YP_002993744.1| - 3.4e-65 220.5 0.9 5e-65 219.9 0.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF1935 PF09149.10 gi|242398320|ref|YP_002993744.1| - 0.07 13.5 0.3 0.22 12.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1935) BPD_transp_1 PF00528.22 gi|242398321|ref|YP_002993745.1| - 9.6e-31 107.0 15.0 1.9e-30 106.0 15.0 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|242398322|ref|YP_002993746.1| - 3.3e-17 62.8 18.5 3.3e-17 62.8 18.5 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|242398322|ref|YP_002993746.1| - 2.4e-05 24.2 0.3 2.4e-05 24.2 0.3 3.7 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|242398323|ref|YP_002993747.1| - 4.8e-25 88.7 0.0 9.4e-25 87.7 0.0 1.5 2 0 0 2 2 1 1 ABC transporter oligo_HPY PF08352.12 gi|242398323|ref|YP_002993747.1| - 5.7e-21 74.8 0.0 1e-20 74.0 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|242398323|ref|YP_002993747.1| - 5e-06 26.5 1.1 0.00026 20.9 0.2 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|242398323|ref|YP_002993747.1| - 0.0036 17.3 0.1 0.0077 16.2 0.0 1.6 2 0 0 2 2 2 1 Rad17 P-loop domain SMC_N PF02463.19 gi|242398323|ref|YP_002993747.1| - 0.0038 16.7 0.1 0.31 10.5 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|242398323|ref|YP_002993747.1| - 0.0046 17.2 0.7 0.052 13.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|242398323|ref|YP_002993747.1| - 0.011 15.4 0.0 0.027 14.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|242398323|ref|YP_002993747.1| - 0.013 14.7 0.1 0.021 14.0 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|242398323|ref|YP_002993747.1| - 0.019 15.4 0.0 0.039 14.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|242398323|ref|YP_002993747.1| - 0.02 14.8 0.0 0.048 13.6 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase MobB PF03205.14 gi|242398323|ref|YP_002993747.1| - 0.031 14.2 0.0 0.064 13.1 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.14 gi|242398323|ref|YP_002993747.1| - 0.033 14.2 0.3 0.21 11.6 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|242398323|ref|YP_002993747.1| - 0.045 13.9 0.0 0.093 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|242398323|ref|YP_002993747.1| - 0.049 13.6 0.1 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA PF00004.29 gi|242398323|ref|YP_002993747.1| - 0.051 14.0 0.1 0.79 10.2 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|242398323|ref|YP_002993747.1| - 0.068 13.6 0.2 0.14 12.6 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain PhoH PF02562.16 gi|242398323|ref|YP_002993747.1| - 0.1 12.0 0.1 0.31 10.5 0.1 2.0 2 1 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.6 gi|242398323|ref|YP_002993747.1| - 0.13 11.9 0.3 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|242398324|ref|YP_002993748.1| - 2.7e-27 95.9 0.0 3.9e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|242398324|ref|YP_002993748.1| - 6.3e-07 29.8 0.0 1.1e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|242398324|ref|YP_002993748.1| - 2.8e-05 24.4 0.1 0.00018 21.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|242398324|ref|YP_002993748.1| - 0.001 18.9 1.3 0.082 12.7 0.6 2.4 2 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|242398324|ref|YP_002993748.1| - 0.0038 16.9 0.1 0.0064 16.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain TniB PF05621.11 gi|242398324|ref|YP_002993748.1| - 0.011 15.1 0.2 0.22 10.9 0.0 2.3 2 1 0 2 2 2 0 Bacterial TniB protein NB-ARC PF00931.22 gi|242398324|ref|YP_002993748.1| - 0.012 14.8 0.1 0.021 14.0 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 gi|242398324|ref|YP_002993748.1| - 0.013 15.8 0.0 0.019 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain G-alpha PF00503.20 gi|242398324|ref|YP_002993748.1| - 0.017 14.3 0.0 0.018 14.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit SMC_N PF02463.19 gi|242398324|ref|YP_002993748.1| - 0.02 14.4 0.2 0.13 11.7 0.2 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|242398324|ref|YP_002993748.1| - 0.033 14.1 0.1 0.056 13.4 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|242398324|ref|YP_002993748.1| - 0.052 12.9 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|242398324|ref|YP_002993748.1| - 0.054 13.2 0.0 2.4 7.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|242398324|ref|YP_002993748.1| - 0.073 13.5 0.1 1.7 9.1 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PIF1 PF05970.14 gi|242398324|ref|YP_002993748.1| - 0.096 11.8 0.1 0.48 9.5 0.1 2.0 2 0 0 2 2 2 0 PIF1-like helicase AAA_18 PF13238.6 gi|242398324|ref|YP_002993748.1| - 0.11 13.0 0.0 0.23 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|242398324|ref|YP_002993748.1| - 0.11 11.7 0.0 0.2 10.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin IstB_IS21 PF01695.17 gi|242398324|ref|YP_002993748.1| - 0.12 12.1 0.0 0.43 10.3 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein TsaE PF02367.17 gi|242398324|ref|YP_002993748.1| - 0.15 12.1 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Glyco_hydro_1 PF00232.18 gi|242398325|ref|YP_002993749.1| - 9e-63 212.2 0.3 1.4e-55 188.6 0.1 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 DUF3043 PF11241.8 gi|242398326|ref|YP_002993750.1| - 0.67 10.0 2.2 0.76 9.8 2.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) TruB_N PF01509.18 gi|242398328|ref|YP_002993752.1| - 7.4e-26 91.3 0.6 3.8e-16 59.8 0.1 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|242398328|ref|YP_002993752.1| - 1e-24 86.5 0.0 2.3e-24 85.3 0.0 1.7 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|242398328|ref|YP_002993752.1| - 3.7e-20 71.7 0.2 7.1e-20 70.8 0.2 1.5 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|242398328|ref|YP_002993752.1| - 1e-16 60.7 0.0 2.8e-16 59.3 0.0 1.8 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|242398328|ref|YP_002993752.1| - 0.00017 21.8 0.1 0.00058 20.1 0.0 1.9 2 0 0 2 2 2 1 UPF0113 PUA domain SIR2_2 PF13289.6 gi|242398328|ref|YP_002993752.1| - 0.18 11.9 0.0 0.4 10.8 0.0 1.5 1 0 0 1 1 1 0 SIR2-like domain MTS PF05175.14 gi|242398329|ref|YP_002993753.1| - 2.9e-42 144.1 0.0 3.4e-42 143.9 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|242398329|ref|YP_002993753.1| - 3.2e-10 39.9 0.2 5.4e-10 39.1 0.2 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|242398329|ref|YP_002993753.1| - 1.1e-06 28.5 0.0 1.3e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|242398329|ref|YP_002993753.1| - 5.2e-06 26.2 0.0 6.6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|242398329|ref|YP_002993753.1| - 9.5e-06 26.2 0.0 1.5e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|242398329|ref|YP_002993753.1| - 1.3e-05 24.4 0.0 1.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_16 PF10294.9 gi|242398329|ref|YP_002993753.1| - 3.7e-05 23.5 0.0 5.5e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_18 PF12847.7 gi|242398329|ref|YP_002993753.1| - 5.4e-05 23.2 0.0 8.6e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|242398329|ref|YP_002993753.1| - 0.00091 19.1 0.0 0.0022 17.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|242398329|ref|YP_002993753.1| - 0.0068 17.1 0.0 0.011 16.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|242398329|ref|YP_002993753.1| - 0.011 16.3 0.0 0.02 15.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|242398329|ref|YP_002993753.1| - 0.013 15.2 0.1 0.02 14.7 0.1 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|242398329|ref|YP_002993753.1| - 0.018 14.3 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|242398329|ref|YP_002993753.1| - 0.038 13.3 0.1 0.054 12.8 0.1 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Pox_MCEL PF03291.16 gi|242398329|ref|YP_002993753.1| - 0.066 12.3 0.0 0.094 11.8 0.0 1.2 1 0 0 1 1 1 0 mRNA capping enzyme TRM PF02005.16 gi|242398329|ref|YP_002993753.1| - 0.097 11.8 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase TehB PF03848.14 gi|242398329|ref|YP_002993753.1| - 0.11 11.9 0.1 1.5 8.2 0.1 2.0 1 1 1 2 2 2 0 Tellurite resistance protein TehB AviRa PF11599.8 gi|242398329|ref|YP_002993753.1| - 0.11 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Ribosomal_S13 PF00416.22 gi|242398330|ref|YP_002993754.1| - 1.1e-40 139.0 0.1 1.3e-40 138.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.25 gi|242398331|ref|YP_002993755.1| - 2.3e-16 59.2 0.1 2.3e-16 59.2 0.1 2.2 2 0 0 2 2 2 1 S4 domain Acyltransferase PF01553.21 gi|242398331|ref|YP_002993755.1| - 0.16 11.6 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Acyltransferase Ribosomal_S11 PF00411.19 gi|242398332|ref|YP_002993756.1| - 2.1e-49 166.5 1.8 2.8e-49 166.1 1.8 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 CBM_25 PF03423.13 gi|242398332|ref|YP_002993756.1| - 0.076 13.3 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Carbohydrate binding domain (family 25) Pilus_CpaD PF09476.10 gi|242398332|ref|YP_002993756.1| - 0.08 12.7 0.2 0.11 12.2 0.2 1.3 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) RNA_pol_A_bac PF01000.26 gi|242398333|ref|YP_002993757.1| - 1.1e-28 99.9 0.0 2.4e-28 98.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|242398333|ref|YP_002993757.1| - 9.4e-18 63.4 0.0 1.4e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18 PF17135.4 gi|242398334|ref|YP_002993758.1| - 8.9e-16 57.8 0.0 1.5e-15 57.0 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|242398334|ref|YP_002993758.1| - 4.1e-09 37.2 1.1 6.2e-09 36.6 1.1 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|242398335|ref|YP_002993759.1| - 7.5e-14 52.1 0.2 1.4e-11 44.7 0.2 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|242398336|ref|YP_002993760.1| - 5.2e-30 104.5 0.4 6e-30 104.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|242398337|ref|YP_002993761.1| - 1.5e-30 105.3 0.5 1.7e-30 105.1 0.5 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.22 gi|242398338|ref|YP_002993762.1| - 4.8e-11 42.4 0.1 6e-11 42.1 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_N PF03952.16 gi|242398339|ref|YP_002993763.1| - 3.8e-23 82.1 0.1 4.3e-22 78.7 0.1 2.2 1 1 0 1 1 1 1 Enolase, N-terminal domain Enolase_C PF00113.22 gi|242398339|ref|YP_002993763.1| - 0.00012 21.5 0.0 0.00023 20.5 0.0 1.4 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Ribosomal_S2 PF00318.20 gi|242398340|ref|YP_002993764.1| - 2.3e-26 92.4 0.0 4.7e-14 52.1 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Nitroreductase PF00881.24 gi|242398341|ref|YP_002993765.1| - 2.6e-29 102.4 0.0 3.1e-29 102.2 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|242398341|ref|YP_002993765.1| - 4.1e-13 49.4 0.6 3e-07 30.2 0.0 2.8 2 1 0 2 2 2 2 Putative TM nitroreductase ThiI PF02568.14 gi|242398342|ref|YP_002993766.1| - 4.4e-61 205.9 0.1 7.2e-61 205.2 0.1 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|242398342|ref|YP_002993766.1| - 1.3e-25 90.2 5.4 2.7e-25 89.1 5.4 1.6 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|242398342|ref|YP_002993766.1| - 4.3e-06 26.4 0.1 0.00032 20.2 0.1 2.4 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|242398342|ref|YP_002993766.1| - 0.00012 21.0 0.0 0.00039 19.3 0.0 1.8 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|242398342|ref|YP_002993766.1| - 0.0015 18.6 0.0 0.003 17.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family DUF5507 PF17612.2 gi|242398342|ref|YP_002993766.1| - 0.014 15.1 0.1 0.034 13.9 0.1 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5507) DUF2007 PF09413.10 gi|242398342|ref|YP_002993766.1| - 0.23 11.6 1.7 15 5.9 0.2 3.2 3 1 0 3 3 3 0 Putative prokaryotic signal transducing protein DUF998 PF06197.13 gi|242398343|ref|YP_002993767.1| - 3e-16 59.6 4.6 3.7e-16 59.3 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF2663 PF10864.8 gi|242398343|ref|YP_002993767.1| - 0.35 11.3 1.6 1.6 9.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2663) MerC PF03203.14 gi|242398343|ref|YP_002993767.1| - 0.8 10.2 7.4 1.9 8.9 1.1 2.6 1 1 2 3 3 3 0 MerC mercury resistance protein DUF4131 PF13567.6 gi|242398343|ref|YP_002993767.1| - 7.6 6.2 6.6 8.8 5.9 3.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) ThiI PF02568.14 gi|242398344|ref|YP_002993768.1| - 3.8e-58 196.3 0.0 4.4e-58 196.1 0.0 1.0 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|242398344|ref|YP_002993768.1| - 1.1e-06 28.4 0.0 0.00041 19.9 0.0 2.4 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|242398344|ref|YP_002993768.1| - 0.0011 17.8 0.0 0.0043 15.9 0.0 2.0 2 1 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|242398344|ref|YP_002993768.1| - 0.012 15.7 0.0 0.014 15.5 0.0 1.1 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|242398344|ref|YP_002993768.1| - 0.043 13.6 0.0 3.3 7.4 0.0 2.2 2 0 0 2 2 2 0 PP-loop family PALP PF00291.25 gi|242398346|ref|YP_002993770.1| - 1.4e-41 142.8 0.0 9.3e-41 140.1 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DIX PF00778.17 gi|242398346|ref|YP_002993770.1| - 0.021 14.7 0.1 0.17 11.7 0.0 2.2 2 0 0 2 2 2 0 DIX domain AIRC PF00731.20 gi|242398346|ref|YP_002993770.1| - 0.12 11.9 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 AIR carboxylase DUF2700 PF10912.8 gi|242398347|ref|YP_002993771.1| - 0.009 16.1 2.2 0.013 15.6 2.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2700) PfkB PF00294.24 gi|242398348|ref|YP_002993772.1| - 4.6e-53 180.5 0.0 8.4e-53 179.6 0.0 1.4 1 1 0 1 1 1 1 pfkB family carbohydrate kinase NAPRTase_N PF17767.1 gi|242398348|ref|YP_002993772.1| - 0.026 14.9 0.0 0.27 11.6 0.0 2.2 2 0 0 2 2 2 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SBP_bac_1 PF01547.25 gi|242398349|ref|YP_002993773.1| - 6.9e-43 147.8 2.6 6.9e-43 147.8 2.6 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|242398349|ref|YP_002993773.1| - 1.7e-28 100.2 0.4 2.3e-28 99.8 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF5572 PF17733.1 gi|242398349|ref|YP_002993773.1| - 0.13 12.2 0.6 0.51 10.2 0.0 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5572) BPD_transp_1 PF00528.22 gi|242398350|ref|YP_002993774.1| - 9.8e-22 77.6 19.2 9.8e-22 77.6 19.2 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TipE PF16972.5 gi|242398350|ref|YP_002993774.1| - 0.53 9.4 2.9 0.8 8.8 2.9 1.2 1 0 0 1 1 1 0 Na+ channel auxiliary subunit TipE BPD_transp_1 PF00528.22 gi|242398351|ref|YP_002993775.1| - 7.2e-22 78.0 16.3 7.2e-22 78.0 16.3 1.9 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Glycos_transf_1 PF00534.20 gi|242398352|ref|YP_002993776.1| - 3.9e-28 98.1 0.1 9.9e-28 96.8 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|242398352|ref|YP_002993776.1| - 2.1e-15 57.3 0.0 4e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|242398352|ref|YP_002993776.1| - 8.9e-09 35.6 0.0 2.2e-08 34.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Tfb5 PF06331.12 gi|242398352|ref|YP_002993776.1| - 0.13 12.3 0.5 1.4 8.9 0.3 2.5 2 0 0 2 2 2 0 Transcription factor TFIIH complex subunit Tfb5 Regulator_TrmB PF11495.8 gi|242398353|ref|YP_002993777.1| - 4.3e-48 163.5 0.4 6.4e-48 163.0 0.4 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|242398353|ref|YP_002993777.1| - 1.4e-21 76.2 0.0 2.3e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|242398353|ref|YP_002993777.1| - 0.094 13.1 0.0 0.48 10.8 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator HTH_9 PF08221.11 gi|242398353|ref|YP_002993777.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain ABC_tran PF00005.27 gi|242398354|ref|YP_002993778.1| - 1.6e-31 109.7 0.0 2.7e-31 108.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|242398354|ref|YP_002993778.1| - 4e-19 69.2 0.1 2e-18 67.0 0.0 2.3 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|242398354|ref|YP_002993778.1| - 8.4e-07 29.1 0.0 2.1e-06 27.8 0.0 1.7 1 0 0 1 1 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|242398354|ref|YP_002993778.1| - 9.2e-07 29.3 0.1 3.7e-06 27.4 0.0 2.1 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_21 PF13304.6 gi|242398354|ref|YP_002993778.1| - 1.3e-05 25.2 0.0 0.14 11.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|242398354|ref|YP_002993778.1| - 7.9e-05 22.9 0.0 0.00019 21.7 0.0 1.7 1 0 0 1 1 1 1 TOBE domain Rad17 PF03215.15 gi|242398354|ref|YP_002993778.1| - 9.5e-05 22.4 0.0 0.00014 21.8 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 gi|242398354|ref|YP_002993778.1| - 0.00013 21.5 0.1 0.0011 18.4 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Syntaxin PF00804.25 gi|242398354|ref|YP_002993778.1| - 0.001 18.8 0.9 0.002 17.9 0.9 1.5 1 1 0 1 1 1 1 Syntaxin AAA_22 PF13401.6 gi|242398354|ref|YP_002993778.1| - 0.0037 17.5 0.3 0.011 16.0 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|242398354|ref|YP_002993778.1| - 0.0046 17.4 0.0 0.0072 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|242398354|ref|YP_002993778.1| - 0.018 14.9 0.0 0.045 13.7 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|242398354|ref|YP_002993778.1| - 0.025 15.0 0.1 0.086 13.3 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|242398354|ref|YP_002993778.1| - 0.053 13.2 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|242398354|ref|YP_002993778.1| - 0.083 12.6 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|242398354|ref|YP_002993778.1| - 0.13 12.8 0.3 0.42 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|242398354|ref|YP_002993778.1| - 0.15 12.4 0.0 0.33 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|242398354|ref|YP_002993778.1| - 0.16 11.9 0.2 0.41 10.7 0.1 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Fucose_iso_C PF02952.17 gi|242398355|ref|YP_002993779.1| - 2.5e-11 43.4 0.0 3.7e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain DUF724 PF05266.14 gi|242398355|ref|YP_002993779.1| - 0.17 11.7 0.1 0.27 11.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) GDE_C PF06202.14 gi|242398356|ref|YP_002993780.1| - 3.7e-15 55.7 0.0 9.6e-15 54.4 0.0 1.6 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N_bis PF14742.6 gi|242398356|ref|YP_002993780.1| - 5.3e-15 55.5 0.1 1.3e-14 54.3 0.1 1.6 1 1 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes Glyco_hydro_100 PF12899.7 gi|242398356|ref|YP_002993780.1| - 7.7e-07 28.1 0.0 4.8e-05 22.2 0.0 2.4 3 0 0 3 3 3 2 Alkaline and neutral invertase Bac_rhamnosid6H PF17389.2 gi|242398356|ref|YP_002993780.1| - 0.0088 15.3 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Imm42 PF15593.6 gi|242398356|ref|YP_002993780.1| - 0.1 13.1 0.0 0.26 11.8 0.0 1.6 1 0 0 1 1 1 0 Immunity protein 42 Glyco_hydro_130 PF04041.13 gi|242398357|ref|YP_002993781.1| - 1.8e-92 309.7 0.1 2.1e-92 309.5 0.1 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_32N PF00251.20 gi|242398357|ref|YP_002993781.1| - 1.9e-10 40.8 0.0 1.6e-05 24.6 0.0 2.5 2 1 0 2 2 2 2 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_43 PF04616.14 gi|242398357|ref|YP_002993781.1| - 1.7e-07 30.8 0.0 7.8e-05 22.1 0.1 2.8 2 1 1 3 3 3 2 Glycosyl hydrolases family 43 BNR_2 PF13088.6 gi|242398357|ref|YP_002993781.1| - 0.0037 16.6 0.0 0.17 11.1 0.0 2.0 1 1 0 2 2 2 1 BNR repeat-like domain BPD_transp_1 PF00528.22 gi|242398358|ref|YP_002993782.1| - 4e-22 78.9 47.7 2.7e-14 53.3 22.5 3.6 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component DUF1449 PF07290.11 gi|242398358|ref|YP_002993782.1| - 0.036 13.7 3.0 0.048 13.3 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1449) ABC_tran PF00005.27 gi|242398359|ref|YP_002993783.1| - 1.4e-32 113.1 0.0 2.6e-32 112.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242398359|ref|YP_002993783.1| - 1.1e-09 38.6 0.1 2.3e-05 24.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|242398359|ref|YP_002993783.1| - 0.001 19.0 0.0 0.0019 18.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 gi|242398359|ref|YP_002993783.1| - 0.0099 15.3 0.0 0.17 11.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|242398359|ref|YP_002993783.1| - 0.017 15.4 0.1 0.083 13.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|242398359|ref|YP_002993783.1| - 0.024 15.1 0.8 0.16 12.4 0.8 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|242398359|ref|YP_002993783.1| - 0.027 14.9 0.0 0.048 14.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.6 gi|242398359|ref|YP_002993783.1| - 0.048 14.0 0.3 0.11 12.9 0.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain TniB PF05621.11 gi|242398359|ref|YP_002993783.1| - 0.069 12.5 0.1 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein sCache_3_2 PF17203.4 gi|242398359|ref|YP_002993783.1| - 0.14 12.3 0.0 0.22 11.6 0.0 1.2 1 0 0 1 1 1 0 Single cache domain 3 AAA_25 PF13481.6 gi|242398359|ref|YP_002993783.1| - 0.15 11.6 0.2 3.4 7.2 0.1 2.2 2 0 0 2 2 2 0 AAA domain SBP_bac_6 PF13343.6 gi|242398360|ref|YP_002993784.1| - 1.2e-32 113.3 0.9 1.4e-32 113.1 0.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|242398360|ref|YP_002993784.1| - 2.9e-24 86.3 0.8 3.9e-24 85.9 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|242398360|ref|YP_002993784.1| - 3e-19 69.7 0.0 4.4e-19 69.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|242398360|ref|YP_002993784.1| - 2.5e-17 63.8 3.3 3.6e-17 63.3 3.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BtpA PF03437.15 gi|242398361|ref|YP_002993785.1| - 1.8e-110 368.3 0.4 2.1e-110 368.1 0.4 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.20 gi|242398361|ref|YP_002993785.1| - 0.00087 18.2 0.0 0.0025 16.7 0.0 1.8 2 0 0 2 2 2 1 Tryptophan synthase alpha chain TMP-TENI PF02581.17 gi|242398361|ref|YP_002993785.1| - 0.006 15.9 0.0 0.63 9.4 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase PcrB PF01884.17 gi|242398361|ref|YP_002993785.1| - 0.017 14.6 0.4 1.2 8.6 0.1 2.8 2 1 1 3 3 3 0 PcrB family Bac_luciferase PF00296.20 gi|242398361|ref|YP_002993785.1| - 0.031 13.7 0.0 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 Luciferase-like monooxygenase B1 PF02246.15 gi|242398361|ref|YP_002993785.1| - 0.072 13.1 0.1 1.3 9.1 0.0 2.7 3 0 0 3 3 3 0 Protein L b1 domain PIN_5 PF08745.11 gi|242398362|ref|YP_002993786.1| - 2.9e-66 222.8 0.5 3.3e-66 222.6 0.5 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease ALC PF17527.2 gi|242398362|ref|YP_002993786.1| - 0.0072 16.0 0.1 0.018 14.7 0.1 1.8 1 1 0 1 1 1 1 Phage ALC protein BofC_C PF08955.10 gi|242398362|ref|YP_002993786.1| - 0.14 12.3 0.1 5 7.2 0.1 2.7 2 1 1 3 3 3 0 BofC C-terminal domain Arabinose_Isome PF02610.15 gi|242398363|ref|YP_002993787.1| - 3.5e-05 23.2 0.0 5.2e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 L-arabinose isomerase Class_IIIsignal PF04021.12 gi|242398364|ref|YP_002993788.1| - 0.00011 22.1 4.7 0.00015 21.7 4.7 1.2 1 0 0 1 1 1 1 Class III signal peptide MSC PF09402.10 gi|242398364|ref|YP_002993788.1| - 0.0029 17.1 1.7 0.0029 17.1 1.7 1.0 1 0 0 1 1 1 1 Man1-Src1p-C-terminal domain DUF4083 PF13314.6 gi|242398364|ref|YP_002993788.1| - 0.0037 17.2 2.6 0.0044 16.9 2.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4083) DUF2443 PF10398.9 gi|242398364|ref|YP_002993788.1| - 0.043 13.9 0.7 0.053 13.6 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2443) Baculo_11_kDa PF06143.11 gi|242398364|ref|YP_002993788.1| - 0.062 12.9 4.4 0.071 12.7 4.4 1.1 1 0 0 1 1 1 0 Baculovirus 11 kDa family DUF4736 PF15883.5 gi|242398364|ref|YP_002993788.1| - 0.084 12.6 1.9 0.083 12.6 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4736) Herpes_LMP1 PF05297.11 gi|242398364|ref|YP_002993788.1| - 0.32 10.2 0.6 0.29 10.3 0.6 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) TadE PF07811.12 gi|242398364|ref|YP_002993788.1| - 1.4 9.2 8.1 4 7.8 8.1 1.7 1 1 0 1 1 1 0 TadE-like protein DctM PF06808.12 gi|242398365|ref|YP_002993789.1| - 9.8e-85 284.9 46.0 4.4e-56 190.5 21.7 2.5 1 1 1 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component Glycophorin_A PF01102.18 gi|242398365|ref|YP_002993789.1| - 0.15 12.3 2.1 20 5.5 0.1 2.9 2 0 0 2 2 2 0 Glycophorin A DUF1850 PF08905.11 gi|242398366|ref|YP_002993790.1| - 9e-11 42.0 0.0 1.2e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) NMT1_3 PF16868.5 gi|242398367|ref|YP_002993791.1| - 2.8e-86 289.5 3.8 3.2e-86 289.3 3.8 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|242398367|ref|YP_002993791.1| - 1.6e-11 44.6 0.4 4e-11 43.3 0.3 1.8 1 1 1 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|242398367|ref|YP_002993791.1| - 6.9e-08 32.4 4.2 3e-07 30.3 4.1 1.9 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|242398367|ref|YP_002993791.1| - 4.7e-06 26.2 0.7 7.8e-06 25.5 0.1 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.12 gi|242398367|ref|YP_002993791.1| - 0.0084 15.7 0.3 0.014 15.0 0.3 1.4 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system tRNA_deacylase PF04414.12 gi|242398369|ref|YP_002993793.1| - 5.6e-66 222.0 0.7 7.5e-66 221.5 0.7 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Tubulin PF00091.25 gi|242398370|ref|YP_002993794.1| - 2.4e-46 158.4 0.4 4.7e-46 157.5 0.4 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|242398370|ref|YP_002993794.1| - 2.4e-33 114.3 2.7 1.3e-32 111.9 1.1 2.6 2 0 0 2 2 2 1 FtsZ family, C-terminal domain DUF3236 PF11576.8 gi|242398370|ref|YP_002993794.1| - 0.0027 17.4 0.5 0.0092 15.7 0.5 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF3236) DUF4147 PF13660.6 gi|242398370|ref|YP_002993794.1| - 0.0038 16.8 3.5 0.16 11.5 0.6 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4147) AlaDh_PNT_C PF01262.21 gi|242398370|ref|YP_002993794.1| - 0.014 14.7 2.0 0.026 13.8 2.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|242398370|ref|YP_002993794.1| - 0.054 12.8 0.1 0.18 11.2 0.0 1.8 2 0 0 2 2 2 0 ThiF family Peripla_BP_6 PF13458.6 gi|242398370|ref|YP_002993794.1| - 0.075 12.7 0.1 0.19 11.3 0.1 1.7 1 1 1 2 2 2 0 Periplasmic binding protein NAD_binding_7 PF13241.6 gi|242398370|ref|YP_002993794.1| - 0.08 13.4 0.7 0.36 11.3 0.2 2.3 2 1 0 2 2 2 0 Putative NAD(P)-binding GCH_III PF05165.12 gi|242398370|ref|YP_002993794.1| - 0.24 10.6 4.0 1.1 8.5 1.7 2.6 2 1 0 2 2 2 0 GTP cyclohydrolase III Tubulin_2 PF13809.6 gi|242398370|ref|YP_002993794.1| - 1.4 8.1 7.5 2.2 7.4 1.5 2.4 1 1 0 2 2 2 0 Tubulin like SecE PF00584.20 gi|242398371|ref|YP_002993795.1| - 1.4e-06 28.1 0.5 1.6e-06 27.9 0.5 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex DUF2839 PF10999.8 gi|242398371|ref|YP_002993795.1| - 0.011 16.1 0.3 0.013 15.9 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2839) Spt5-NGN PF03439.13 gi|242398372|ref|YP_002993796.1| - 9.3e-22 76.7 0.1 1.7e-21 75.9 0.1 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|242398372|ref|YP_002993796.1| - 5.5e-09 35.7 2.6 7.7e-09 35.2 0.7 2.2 3 0 0 3 3 3 1 KOW motif Ribosomal_L11_N PF03946.14 gi|242398373|ref|YP_002993797.1| - 2.9e-24 84.7 1.4 2.9e-24 84.7 1.4 1.9 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|242398373|ref|YP_002993797.1| - 2.4e-22 79.2 2.4 4.5e-22 78.3 2.4 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain GTP_EFTU_D4 PF14578.6 gi|242398373|ref|YP_002993797.1| - 0.11 12.4 0.4 0.11 12.4 0.4 1.8 2 1 0 2 2 2 0 Elongation factor Tu domain 4 Ribosomal_L1 PF00687.21 gi|242398374|ref|YP_002993798.1| - 1.8e-47 161.7 0.2 2.2e-47 161.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family RL10P_insert PF17777.1 gi|242398375|ref|YP_002993799.1| - 1.3e-23 82.8 0.2 2.9e-23 81.7 0.2 1.6 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|242398375|ref|YP_002993799.1| - 6.7e-22 77.5 1.1 1.1e-21 76.9 0.3 1.8 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.19 gi|242398375|ref|YP_002993799.1| - 1.9e-05 25.2 24.0 0.00016 22.2 16.1 3.9 4 1 0 4 4 4 2 60s Acidic ribosomal protein Trigger_C PF05698.14 gi|242398375|ref|YP_002993799.1| - 0.005 16.9 6.2 0.98 9.4 3.5 2.4 2 0 0 2 2 2 2 Bacterial trigger factor protein (TF) C-terminus Ribosomal_60s PF00428.19 gi|242398376|ref|YP_002993800.1| - 3.5e-21 75.6 20.5 4.2e-21 75.3 20.5 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|242398376|ref|YP_002993800.1| - 0.00019 21.6 2.4 0.0002 21.5 1.8 1.4 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain PhetRS_B1 PF18262.1 gi|242398376|ref|YP_002993800.1| - 0.015 15.5 0.6 0.025 14.8 0.0 1.7 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain DUF1840 PF08895.11 gi|242398376|ref|YP_002993800.1| - 1 9.7 9.3 3.6 8.0 7.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1840) DUF3391 PF11871.8 gi|242398376|ref|YP_002993800.1| - 2.3 8.7 5.5 3 8.4 5.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3391) dUTPase PF00692.19 gi|242398377|ref|YP_002993801.1| - 2.1e-13 50.1 0.0 1.6e-11 44.0 0.0 2.0 1 1 0 1 1 1 1 dUTPase DCD PF06559.11 gi|242398377|ref|YP_002993801.1| - 0.0055 15.5 0.0 0.51 9.1 0.0 2.5 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) RNA_pol_Rpb5_C PF01191.19 gi|242398378|ref|YP_002993802.1| - 2.7e-31 107.2 0.4 3.1e-31 107.1 0.4 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain HpaB_N PF11794.8 gi|242398378|ref|YP_002993802.1| - 0.071 12.8 0.0 0.089 12.4 0.0 1.2 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal RNA_pol_Rpb2_6 PF00562.28 gi|242398379|ref|YP_002993803.1| - 1.1e-131 439.5 0.0 1.7e-131 438.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|242398379|ref|YP_002993803.1| - 3e-52 177.1 0.0 4.5e-52 176.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|242398379|ref|YP_002993803.1| - 1.1e-34 119.8 0.0 2.2e-34 118.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|242398379|ref|YP_002993803.1| - 7.4e-31 106.4 0.2 1.9e-30 105.1 0.2 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|242398379|ref|YP_002993803.1| - 6.6e-30 103.1 0.1 1.3e-29 102.1 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|242398379|ref|YP_002993803.1| - 1e-20 73.8 2.0 2.3e-20 72.7 2.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|242398379|ref|YP_002993803.1| - 4e-08 33.7 3.7 1.9e-07 31.6 3.7 2.2 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 NOB1_Zn_bind PF08772.11 gi|242398379|ref|YP_002993803.1| - 0.0099 16.0 0.1 0.031 14.5 0.1 1.8 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.12 gi|242398379|ref|YP_002993803.1| - 0.16 12.1 0.7 0.31 11.2 0.7 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|242398379|ref|YP_002993803.1| - 0.54 9.8 1.9 24 4.6 0.0 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding RNA_pol_Rpb1_1 PF04997.12 gi|242398380|ref|YP_002993804.1| - 4.5e-108 361.3 0.0 6.1e-108 360.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|242398380|ref|YP_002993804.1| - 7.5e-74 247.5 0.1 1.2e-73 246.8 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|242398380|ref|YP_002993804.1| - 6.3e-39 133.4 0.0 1.1e-38 132.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|242398380|ref|YP_002993804.1| - 1.1e-29 102.5 0.0 2.5e-29 101.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|242398380|ref|YP_002993804.1| - 3.9e-29 101.9 0.1 7.4e-29 101.0 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-RING_7 PF02591.15 gi|242398380|ref|YP_002993804.1| - 0.081 13.1 5.2 9.2 6.6 0.0 3.8 4 0 0 4 4 4 0 C4-type zinc ribbon domain DZR PF12773.7 gi|242398380|ref|YP_002993804.1| - 0.3 11.2 1.8 6.3 6.9 0.4 2.3 2 0 0 2 2 2 0 Double zinc ribbon ADK_lid PF05191.14 gi|242398380|ref|YP_002993804.1| - 0.52 10.3 3.4 9 6.4 0.1 3.1 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-ribbon_3 PF13248.6 gi|242398380|ref|YP_002993804.1| - 0.83 9.2 3.8 1.3 8.5 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|242398380|ref|YP_002993804.1| - 1.7 8.7 3.2 6.5 6.8 0.4 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|242398380|ref|YP_002993804.1| - 5.3 7.1 6.8 1.3 9.0 0.2 3.1 3 0 0 3 3 3 0 Nudix N-terminal RNA_pol_Rpb1_5 PF04998.17 gi|242398381|ref|YP_002993805.1| - 2e-55 188.1 6.4 4.5e-55 187.0 6.4 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 PG_binding_4 PF12229.8 gi|242398381|ref|YP_002993805.1| - 0.00059 20.1 0.5 0.025 14.9 0.1 2.5 2 0 0 2 2 2 1 Putative peptidoglycan binding domain KH_7 PF17214.3 gi|242398381|ref|YP_002993805.1| - 0.085 12.8 1.2 1.7 8.7 0.2 2.7 2 0 0 2 2 2 0 KH domain DUF4277 PF14104.6 gi|242398381|ref|YP_002993805.1| - 0.086 13.2 0.6 2.6 8.4 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4277) SMC_ScpA PF02616.14 gi|242398381|ref|YP_002993805.1| - 0.12 12.3 3.0 0.49 10.3 0.0 2.4 2 1 0 2 2 2 0 Segregation and condensation protein ScpA Ribosomal_L7Ae PF01248.26 gi|242398382|ref|YP_002993806.1| - 1.7e-19 69.3 0.0 1.8e-19 69.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|242398383|ref|YP_002993807.1| - 7.2e-20 70.6 6.5 4.1e-16 58.6 1.6 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|242398383|ref|YP_002993807.1| - 1.2e-09 38.1 5.8 2.4e-09 37.2 1.2 2.5 1 1 2 3 3 3 1 NusA-like KH domain KH_4 PF13083.6 gi|242398383|ref|YP_002993807.1| - 3.3e-07 30.1 3.3 8.5e-05 22.4 0.5 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|242398383|ref|YP_002993807.1| - 4.1e-06 26.5 2.7 0.023 14.5 0.9 2.9 2 1 0 2 2 2 2 KH domain Ribosom_S12_S23 PF00164.25 gi|242398384|ref|YP_002993808.1| - 5.4e-48 161.4 1.4 6.7e-48 161.0 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|242398385|ref|YP_002993809.1| - 1.3e-38 132.0 3.6 1.8e-38 131.5 3.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF1945 PF09178.10 gi|242398385|ref|YP_002993809.1| - 0.14 12.4 0.7 0.38 11.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1945) Prok-TraM PF09228.10 gi|242398385|ref|YP_002993809.1| - 0.17 12.2 1.5 7.4 7.0 0.2 2.3 2 0 0 2 2 2 0 Prokaryotic Transcriptional repressor TraM Phosphodiest PF01663.22 gi|242398388|ref|YP_002993812.1| - 1e-47 163.5 0.1 1.2e-47 163.3 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|242398388|ref|YP_002993812.1| - 2.7e-06 26.9 0.0 2.7e-05 23.6 0.0 2.0 2 0 0 2 2 2 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|242398388|ref|YP_002993812.1| - 9.2e-05 22.0 0.0 0.11 11.9 0.0 2.4 1 1 1 2 2 2 2 Sulfatase DUF835 PF05763.12 gi|242398389|ref|YP_002993813.1| - 2.1e-34 118.2 0.2 3e-34 117.7 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Nre_N PF04894.12 gi|242398390|ref|YP_002993814.1| - 1e-102 343.6 0.0 1.3e-102 343.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|242398390|ref|YP_002993814.1| - 5.4e-37 126.1 0.5 8.9e-37 125.4 0.5 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal PALP PF00291.25 gi|242398391|ref|YP_002993815.1| - 2e-58 198.1 0.0 2.6e-58 197.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PNP_UDP_1 PF01048.20 gi|242398392|ref|YP_002993816.1| - 1.2e-46 158.9 0.3 1.4e-46 158.6 0.3 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF257 PF03192.13 gi|242398393|ref|YP_002993817.1| - 1.3e-31 110.0 3.7 1.5e-31 109.8 3.7 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 SHNi-TPR PF10516.9 gi|242398393|ref|YP_002993817.1| - 0.0077 15.7 0.0 0.018 14.5 0.0 1.6 1 0 0 1 1 1 1 SHNi-TPR CdiI_2 PF18593.1 gi|242398393|ref|YP_002993817.1| - 0.095 13.4 0.1 1 10.0 0.0 2.4 2 0 0 2 2 2 0 CdiI immunity protein Gln-synt_C-ter PF18318.1 gi|242398393|ref|YP_002993817.1| - 0.097 12.5 0.5 15 5.5 0.0 2.4 2 0 0 2 2 2 0 Glutamine synthetase C-terminal domain DNA_RNApol_7kD PF03604.13 gi|242398394|ref|YP_002993818.1| - 0.00012 21.6 3.8 0.0002 20.9 3.8 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L40e PF01020.17 gi|242398394|ref|YP_002993818.1| - 0.001 18.9 4.8 0.0013 18.6 4.8 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.7 gi|242398394|ref|YP_002993818.1| - 0.0014 18.6 0.3 0.0015 18.5 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|242398394|ref|YP_002993818.1| - 0.0018 17.9 2.5 0.0029 17.3 2.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|242398394|ref|YP_002993818.1| - 0.024 14.4 1.4 5.1 6.9 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Toxin_5 PF05294.13 gi|242398394|ref|YP_002993818.1| - 0.025 15.0 2.0 0.034 14.5 2.0 1.3 1 0 0 1 1 1 0 Scorpion short toxin zinc_ribbon_10 PF10058.9 gi|242398394|ref|YP_002993818.1| - 0.044 13.5 1.1 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ribbon_3 PF13248.6 gi|242398394|ref|YP_002993818.1| - 0.054 12.9 2.4 0.083 12.3 2.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|242398394|ref|YP_002993818.1| - 0.068 13.4 0.8 8.4 6.6 0.0 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-nanos PF05741.13 gi|242398394|ref|YP_002993818.1| - 0.15 12.4 2.6 1.8 8.9 0.2 2.2 1 1 1 2 2 2 0 Nanos RNA binding domain PadR PF03551.14 gi|242398395|ref|YP_002993819.1| - 4.3e-18 65.0 0.7 5.8e-18 64.6 0.7 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|242398395|ref|YP_002993819.1| - 1e-05 26.1 1.6 1.2e-05 25.9 1.6 1.2 1 0 0 1 1 1 1 Replication terminator protein Mrr_N PF14338.6 gi|242398395|ref|YP_002993819.1| - 0.00051 20.1 0.0 0.39 10.9 0.0 2.3 2 0 0 2 2 2 2 Mrr N-terminal domain DUF3116 PF11313.8 gi|242398395|ref|YP_002993819.1| - 0.0013 18.6 1.4 0.0022 17.8 1.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3116) HTH_34 PF13601.6 gi|242398395|ref|YP_002993819.1| - 0.0063 16.7 0.1 0.0093 16.1 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.12 gi|242398395|ref|YP_002993819.1| - 0.0092 14.4 0.9 0.0093 14.4 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) Replic_Relax PF13814.6 gi|242398395|ref|YP_002993819.1| - 0.024 14.7 0.0 0.026 14.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_45 PF14947.6 gi|242398395|ref|YP_002993819.1| - 0.029 14.3 0.2 0.034 14.1 0.2 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix HxlR PF01638.17 gi|242398395|ref|YP_002993819.1| - 0.031 14.1 0.4 0.057 13.3 0.2 1.7 1 1 1 2 2 2 0 HxlR-like helix-turn-helix DUF4364 PF14277.6 gi|242398395|ref|YP_002993819.1| - 0.065 13.0 0.1 0.088 12.6 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|242398395|ref|YP_002993819.1| - 0.073 13.6 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain FUN14 PF04930.15 gi|242398396|ref|YP_002993820.1| - 3.6e-14 52.9 5.9 5e-14 52.5 5.9 1.2 1 0 0 1 1 1 1 FUN14 family SPC12 PF06645.13 gi|242398396|ref|YP_002993820.1| - 0.024 14.7 2.2 0.024 14.7 2.2 2.1 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) TMEM107 PF14995.6 gi|242398396|ref|YP_002993820.1| - 0.074 13.5 0.5 0.1 13.1 0.4 1.3 1 1 0 1 1 1 0 Transmembrane protein Gly-zipper_Omp PF13488.6 gi|242398396|ref|YP_002993820.1| - 0.73 9.9 4.4 0.56 10.3 0.5 2.1 2 0 0 2 2 2 0 Glycine zipper Polysacc_synt_C PF14667.6 gi|242398397|ref|YP_002993821.1| - 0.0038 17.3 14.8 0.0038 17.3 14.8 4.5 2 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|242398397|ref|YP_002993821.1| - 0.0044 16.7 7.5 0.0044 16.7 7.5 4.1 3 2 0 3 3 3 1 MatE Peptidase_M24 PF00557.24 gi|242398398|ref|YP_002993822.1| - 1.5e-68 230.7 0.8 1.9e-68 230.3 0.8 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|242398398|ref|YP_002993822.1| - 3.5e-17 63.3 0.0 6.2e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Rio2_N PF09202.11 gi|242398398|ref|YP_002993822.1| - 0.13 12.5 0.1 0.37 11.0 0.1 1.8 1 0 0 1 1 1 0 Rio2, N-terminal Amidohydro_3 PF07969.11 gi|242398399|ref|YP_002993823.1| - 7e-113 378.6 0.0 8e-113 378.4 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|242398399|ref|YP_002993823.1| - 1e-18 67.8 0.0 2.8e-13 49.9 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase family AP_endonuc_2 PF01261.24 gi|242398399|ref|YP_002993823.1| - 0.16 11.4 0.0 0.46 9.9 0.0 1.7 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel SRP54 PF00448.22 gi|242398400|ref|YP_002993824.1| - 3.9e-77 258.3 0.2 5.6e-77 257.8 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|242398400|ref|YP_002993824.1| - 1.3e-12 47.7 7.6 1.3e-12 47.7 7.6 1.8 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|242398400|ref|YP_002993824.1| - 2.3e-07 30.7 0.5 3.6e-07 30.1 0.5 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|242398400|ref|YP_002993824.1| - 6.7e-06 26.0 3.2 0.005 16.7 0.2 2.4 1 1 1 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B Peripla_BP_4 PF13407.6 gi|242398400|ref|YP_002993824.1| - 1.2e-05 25.0 3.5 0.042 13.4 0.1 3.0 1 1 2 3 3 3 2 Periplasmic binding protein domain MeaB PF03308.16 gi|242398400|ref|YP_002993824.1| - 1.5e-05 24.1 0.1 3.5e-05 22.9 0.1 1.6 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|242398400|ref|YP_002993824.1| - 1.9e-05 24.0 0.1 5.4e-05 22.6 0.1 1.7 1 1 1 2 2 2 1 Zeta toxin AAA_33 PF13671.6 gi|242398400|ref|YP_002993824.1| - 0.00011 22.4 0.0 0.00021 21.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|242398400|ref|YP_002993824.1| - 0.00012 22.1 2.4 0.00045 20.3 0.8 2.4 2 1 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 gi|242398400|ref|YP_002993824.1| - 0.00015 22.2 2.3 0.00027 21.4 0.1 2.2 2 1 0 2 2 2 1 AAA domain cobW PF02492.19 gi|242398400|ref|YP_002993824.1| - 0.00024 20.7 1.3 0.00061 19.4 1.3 1.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain VirC1 PF07015.11 gi|242398400|ref|YP_002993824.1| - 0.0003 20.2 0.0 0.0006 19.2 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein Thymidylate_kin PF02223.17 gi|242398400|ref|YP_002993824.1| - 0.00055 19.7 0.3 0.003 17.3 0.1 2.3 1 1 0 2 2 2 1 Thymidylate kinase MMR_HSR1 PF01926.23 gi|242398400|ref|YP_002993824.1| - 0.00055 20.0 3.8 0.0018 18.4 0.6 2.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|242398400|ref|YP_002993824.1| - 0.0013 19.0 0.0 0.0027 18.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain CbiJ PF02571.14 gi|242398400|ref|YP_002993824.1| - 0.002 17.6 0.0 0.003 17.1 0.0 1.2 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK KdpD PF02702.17 gi|242398400|ref|YP_002993824.1| - 0.0027 17.2 2.9 0.009 15.5 0.1 2.4 2 1 1 3 3 3 1 Osmosensitive K+ channel His kinase sensor domain 6PF2K PF01591.18 gi|242398400|ref|YP_002993824.1| - 0.0044 16.3 0.0 0.0091 15.3 0.0 1.5 1 0 0 1 1 1 1 6-phosphofructo-2-kinase RsgA_GTPase PF03193.16 gi|242398400|ref|YP_002993824.1| - 0.0056 16.6 1.2 0.5 10.2 0.6 3.1 1 1 2 3 3 3 1 RsgA GTPase AAA_28 PF13521.6 gi|242398400|ref|YP_002993824.1| - 0.0062 16.8 0.1 0.012 15.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|242398400|ref|YP_002993824.1| - 0.0074 16.1 0.2 0.62 9.8 0.0 2.3 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop Fe-ADH PF00465.19 gi|242398400|ref|YP_002993824.1| - 0.0082 15.0 1.0 0.11 11.3 0.3 2.2 1 1 1 2 2 2 1 Iron-containing alcohol dehydrogenase APS_kinase PF01583.20 gi|242398400|ref|YP_002993824.1| - 0.0087 16.0 0.3 0.033 14.1 0.0 2.0 2 1 0 2 2 2 1 Adenylylsulphate kinase CoA_binding_2 PF13380.6 gi|242398400|ref|YP_002993824.1| - 0.015 15.8 0.4 0.41 11.2 0.0 2.6 1 1 1 2 2 2 0 CoA binding domain KTI12 PF08433.10 gi|242398400|ref|YP_002993824.1| - 0.015 14.8 0.1 0.031 13.7 0.0 1.6 2 0 0 2 2 1 0 Chromatin associated protein KTI12 DUF2855 PF11017.8 gi|242398400|ref|YP_002993824.1| - 0.017 14.9 0.1 0.028 14.2 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2855) NTPase_1 PF03266.15 gi|242398400|ref|YP_002993824.1| - 0.022 14.6 6.8 0.33 10.9 2.8 3.1 1 1 1 2 2 2 0 NTPase ATPgrasp_N PF18130.1 gi|242398400|ref|YP_002993824.1| - 0.027 15.0 0.5 0.23 12.0 0.1 2.6 2 0 0 2 2 2 0 ATP-grasp N-terminal domain AAA_19 PF13245.6 gi|242398400|ref|YP_002993824.1| - 0.032 14.6 0.2 0.075 13.4 0.2 1.6 1 1 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|242398400|ref|YP_002993824.1| - 0.035 13.3 0.0 0.058 12.6 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase Glyco_transf_4 PF13439.6 gi|242398400|ref|YP_002993824.1| - 0.042 13.8 0.0 0.19 11.7 0.0 2.0 1 1 0 1 1 1 0 Glycosyltransferase Family 4 UvdE PF03851.14 gi|242398400|ref|YP_002993824.1| - 0.059 12.6 0.0 0.092 12.0 0.0 1.3 1 0 0 1 1 1 0 UV-endonuclease UvdE ZnuA PF01297.17 gi|242398400|ref|YP_002993824.1| - 0.059 12.8 0.2 0.94 8.8 0.1 2.3 1 1 1 2 2 2 0 Zinc-uptake complex component A periplasmic Glyco_trans_4_2 PF13477.6 gi|242398400|ref|YP_002993824.1| - 0.063 13.3 0.1 6 6.9 0.1 2.3 1 1 1 2 2 2 0 Glycosyl transferase 4-like TPP_enzyme_M PF00205.22 gi|242398400|ref|YP_002993824.1| - 0.067 12.9 0.3 6.5 6.5 0.1 2.5 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain TrwB_AAD_bind PF10412.9 gi|242398400|ref|YP_002993824.1| - 0.098 11.5 0.0 0.19 10.6 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_31 PF13614.6 gi|242398400|ref|YP_002993824.1| - 0.1 12.5 2.3 0.086 12.7 0.5 1.9 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|242398400|ref|YP_002993824.1| - 0.11 12.9 0.0 0.23 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain Torsin PF06309.11 gi|242398400|ref|YP_002993824.1| - 0.18 11.9 0.2 0.9 9.6 0.2 2.1 1 1 0 1 1 1 0 Torsin Glyco_trans_4_4 PF13579.6 gi|242398400|ref|YP_002993824.1| - 0.2 12.1 0.0 0.41 11.1 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain ATPase_2 PF01637.18 gi|242398400|ref|YP_002993824.1| - 0.69 9.8 4.5 0.57 10.0 0.1 2.3 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea MarC PF01914.17 gi|242398401|ref|YP_002993825.1| - 2.5e-61 206.6 15.2 2.9e-61 206.4 15.2 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein COX4_pro_2 PF07835.12 gi|242398401|ref|YP_002993825.1| - 0.028 14.5 0.3 0.028 14.5 0.3 2.4 2 0 0 2 2 2 0 Bacterial aa3 type cytochrome c oxidase subunit IV ABC_tran PF00005.27 gi|242398402|ref|YP_002993826.1| - 1.6e-29 103.2 0.0 2.3e-29 102.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242398402|ref|YP_002993826.1| - 4.1e-14 53.1 0.1 9e-06 25.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|242398402|ref|YP_002993826.1| - 1.6e-06 27.7 0.0 4.2e-05 23.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|242398402|ref|YP_002993826.1| - 3.8e-05 24.3 0.0 6.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|242398402|ref|YP_002993826.1| - 0.00012 21.7 0.0 0.00023 20.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|242398402|ref|YP_002993826.1| - 0.00025 21.3 0.0 0.0013 19.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|242398402|ref|YP_002993826.1| - 0.00051 19.8 0.0 0.00089 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain DLIC PF05783.11 gi|242398402|ref|YP_002993826.1| - 0.00054 18.9 0.0 0.00087 18.2 0.0 1.4 1 1 0 1 1 1 1 Dynein light intermediate chain (DLIC) AAA_15 PF13175.6 gi|242398402|ref|YP_002993826.1| - 0.00067 19.5 0.0 0.1 12.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|242398402|ref|YP_002993826.1| - 0.001 19.0 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|242398402|ref|YP_002993826.1| - 0.0016 18.9 0.0 0.0023 18.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|242398402|ref|YP_002993826.1| - 0.0019 18.6 0.4 0.0073 16.7 0.4 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|242398402|ref|YP_002993826.1| - 0.0033 17.1 0.0 0.0052 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|242398402|ref|YP_002993826.1| - 0.0055 16.7 0.0 0.0086 16.0 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea G-alpha PF00503.20 gi|242398402|ref|YP_002993826.1| - 0.0063 15.7 0.0 0.012 14.8 0.0 1.4 2 0 0 2 2 2 1 G-protein alpha subunit AAA_18 PF13238.6 gi|242398402|ref|YP_002993826.1| - 0.0065 17.0 0.0 0.012 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.9 gi|242398402|ref|YP_002993826.1| - 0.0069 16.1 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|242398402|ref|YP_002993826.1| - 0.02 14.1 0.0 0.066 12.4 0.0 1.8 1 1 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|242398402|ref|YP_002993826.1| - 0.021 14.7 0.2 0.045 13.7 0.2 1.5 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|242398402|ref|YP_002993826.1| - 0.024 14.7 0.0 0.049 13.6 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 gi|242398402|ref|YP_002993826.1| - 0.029 14.6 0.1 0.64 10.3 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.17 gi|242398402|ref|YP_002993826.1| - 0.03 14.1 0.0 0.47 10.2 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_13 PF13166.6 gi|242398402|ref|YP_002993826.1| - 0.043 12.5 0.0 0.52 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|242398402|ref|YP_002993826.1| - 0.043 14.0 0.0 0.2 11.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|242398402|ref|YP_002993826.1| - 0.048 13.6 0.0 0.16 11.9 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain cobW PF02492.19 gi|242398402|ref|YP_002993826.1| - 0.052 13.1 0.3 0.094 12.3 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|242398402|ref|YP_002993826.1| - 0.071 12.7 0.2 0.13 11.8 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_5 PF07728.14 gi|242398402|ref|YP_002993826.1| - 0.082 12.9 0.1 0.19 11.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) BCA_ABC_TP_C PF12399.8 gi|242398402|ref|YP_002993826.1| - 0.092 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_7 PF12775.7 gi|242398402|ref|YP_002993826.1| - 0.11 12.0 0.0 1.3 8.5 0.0 2.5 2 1 1 3 3 3 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|242398402|ref|YP_002993826.1| - 0.11 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF3584 PF12128.8 gi|242398402|ref|YP_002993826.1| - 0.14 9.7 0.1 0.18 9.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_28 PF13521.6 gi|242398402|ref|YP_002993826.1| - 0.17 12.1 0.2 0.29 11.4 0.2 1.4 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|242398402|ref|YP_002993826.1| - 0.21 11.6 0.0 0.33 10.9 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit ABC-3 PF00950.17 gi|242398403|ref|YP_002993827.1| - 1.4e-27 96.8 33.9 1.9e-27 96.4 33.9 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|242398403|ref|YP_002993827.1| - 0.0012 17.9 33.2 0.0012 17.9 33.2 1.5 1 1 1 2 2 2 1 FecCD transport family RNase_HII PF01351.18 gi|242398404|ref|YP_002993828.1| - 6.1e-52 176.3 0.0 7.6e-52 176.0 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII DUF4003 PF13170.6 gi|242398404|ref|YP_002993828.1| - 0.0081 15.6 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4003) PMT_2 PF13231.6 gi|242398405|ref|YP_002993829.1| - 0.00013 22.3 9.2 0.00013 22.3 9.2 2.4 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase GT87 PF09594.10 gi|242398405|ref|YP_002993829.1| - 0.0035 17.1 6.6 0.0035 17.1 6.6 2.4 1 1 1 2 2 2 1 Glycosyltransferase family 87 PMT_4TMC PF16192.5 gi|242398405|ref|YP_002993829.1| - 0.0063 16.1 1.7 0.0063 16.1 1.7 2.7 3 0 0 3 3 3 1 C-terminal four TMM region of protein-O-mannosyltransferase PMT PF02366.18 gi|242398405|ref|YP_002993829.1| - 0.65 9.5 24.4 0.023 14.3 12.1 3.1 2 1 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Methyltransf_15 PF09445.10 gi|242398406|ref|YP_002993830.1| - 5.5e-12 45.6 0.0 1.4e-11 44.2 0.0 1.7 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|242398406|ref|YP_002993830.1| - 2.9e-06 27.9 0.0 1.5e-05 25.6 0.0 2.2 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|242398406|ref|YP_002993830.1| - 3.4e-06 27.0 0.1 8.8e-06 25.7 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|242398406|ref|YP_002993830.1| - 0.00012 21.9 0.0 0.00022 21.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|242398406|ref|YP_002993830.1| - 0.00012 21.6 0.1 0.00021 20.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|242398406|ref|YP_002993830.1| - 0.00062 20.4 0.0 0.0023 18.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|242398406|ref|YP_002993830.1| - 0.0011 18.5 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|242398406|ref|YP_002993830.1| - 0.0025 17.6 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein UPF0020 PF01170.18 gi|242398406|ref|YP_002993830.1| - 0.0031 17.2 0.0 0.0055 16.4 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 CmcI PF04989.12 gi|242398406|ref|YP_002993830.1| - 0.0084 15.8 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Cephalosporin hydroxylase AdoMet_MTase PF07757.13 gi|242398406|ref|YP_002993830.1| - 0.073 13.4 0.1 0.2 12.0 0.0 1.8 2 0 0 2 2 2 0 Predicted AdoMet-dependent methyltransferase SIS PF01380.22 gi|242398408|ref|YP_002993832.1| - 6.6e-54 181.3 1.8 7.9e-30 103.4 1.6 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|242398408|ref|YP_002993832.1| - 1.3e-21 77.2 0.0 3e-21 76.0 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|242398408|ref|YP_002993832.1| - 8.2e-20 70.9 0.0 1.9e-19 69.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain bact-PGI_C PF10432.9 gi|242398408|ref|YP_002993832.1| - 0.028 14.5 0.3 0.31 11.1 0.0 2.8 2 2 0 2 2 2 0 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS_2 PF13580.6 gi|242398408|ref|YP_002993832.1| - 0.04 13.9 1.8 0.66 10.0 0.1 3.0 2 1 0 3 3 3 0 SIS domain OST_P2 PF18235.1 gi|242398409|ref|YP_002993833.1| - 6.9e-60 200.8 0.1 1.5e-59 199.7 0.1 1.6 1 0 0 1 1 1 1 Oligosaccharyltransferase Peripheral 2 domain OST_IS PF18246.1 gi|242398409|ref|YP_002993833.1| - 3.9e-38 129.6 2.2 9.5e-38 128.4 2.2 1.7 1 0 0 1 1 1 1 Oligosaccharyltransferase Insert domain PMT_2 PF13231.6 gi|242398409|ref|YP_002993833.1| - 3.7e-05 24.0 10.8 3.7e-05 24.0 10.8 3.4 2 1 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Tetraspanin PF00335.20 gi|242398409|ref|YP_002993833.1| - 3.7 7.2 15.1 0.036 13.8 2.5 2.8 2 1 0 3 3 3 0 Tetraspanin family Ribosomal_L7Ae PF01248.26 gi|242398410|ref|YP_002993834.1| - 2e-31 107.6 0.3 2.5e-31 107.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|242398410|ref|YP_002993834.1| - 0.00053 19.8 0.1 0.00079 19.3 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|242398410|ref|YP_002993834.1| - 0.032 14.7 0.1 0.037 14.5 0.1 1.3 1 1 0 1 1 1 0 eRF1 domain 3 Ribosomal_S28e PF01200.18 gi|242398411|ref|YP_002993835.1| - 1.8e-29 101.5 4.8 2e-29 101.4 4.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|242398412|ref|YP_002993836.1| - 1.1e-24 86.4 5.2 1.2e-24 86.3 5.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|242398412|ref|YP_002993836.1| - 7.5e-05 22.6 3.4 0.00011 22.1 3.4 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|242398412|ref|YP_002993836.1| - 0.00013 22.0 4.5 0.00021 21.3 4.5 1.3 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|242398412|ref|YP_002993836.1| - 0.00054 20.2 3.3 0.0011 19.2 3.3 1.6 1 1 0 1 1 1 1 Archaeal TRASH domain DUF3268 PF11672.8 gi|242398412|ref|YP_002993836.1| - 0.00093 19.5 0.5 0.00096 19.5 0.5 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain zf-ribbon_3 PF13248.6 gi|242398412|ref|YP_002993836.1| - 0.034 13.6 0.1 0.068 12.6 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Toprim_4 PF13662.6 gi|242398413|ref|YP_002993837.1| - 6.7e-14 52.1 0.6 2.7e-13 50.2 0.4 2.1 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|242398413|ref|YP_002993837.1| - 3.2e-06 27.5 0.0 8.8e-06 26.1 0.0 1.8 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|242398413|ref|YP_002993837.1| - 0.00069 19.8 0.4 0.00069 19.8 0.4 3.0 2 2 1 3 3 3 1 Toprim domain OxoGdeHyase_C PF16870.5 gi|242398413|ref|YP_002993837.1| - 0.043 13.5 1.1 0.12 12.1 1.1 1.7 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase C-terminal Toprim PF01751.22 gi|242398414|ref|YP_002993838.1| - 5.8e-06 26.5 0.2 1.3e-05 25.3 0.2 1.7 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|242398414|ref|YP_002993838.1| - 0.00066 20.1 0.1 0.0014 19.1 0.1 1.6 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|242398414|ref|YP_002993838.1| - 0.0064 16.9 0.0 0.009 16.4 0.0 1.2 1 0 0 1 1 1 1 Toprim-like Toprim_3 PF13362.6 gi|242398414|ref|YP_002993838.1| - 0.082 13.3 0.0 0.1 13.0 0.0 1.2 1 0 0 1 1 1 0 Toprim domain CPSF_A PF03178.15 gi|242398414|ref|YP_002993838.1| - 0.14 11.4 0.2 7.1 5.8 0.1 2.0 1 1 1 2 2 2 0 CPSF A subunit region Exonuc_VII_S PF02609.16 gi|242398414|ref|YP_002993838.1| - 1.5 8.9 4.4 2.6 8.2 0.2 2.6 3 0 0 3 3 3 0 Exonuclease VII small subunit TrmB PF01978.19 gi|242398415|ref|YP_002993839.1| - 2.8e-18 65.6 0.0 5.1e-18 64.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|242398415|ref|YP_002993839.1| - 1.4e-05 24.5 0.1 1.9e-05 24.0 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|242398416|ref|YP_002993840.1| - 0.01 15.7 0.1 0.012 15.5 0.1 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|242398416|ref|YP_002993840.1| - 0.032 14.0 0.3 0.041 13.7 0.3 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF742 PF05331.11 gi|242398416|ref|YP_002993840.1| - 0.078 12.8 0.0 0.08 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_5 PF01022.20 gi|242398416|ref|YP_002993840.1| - 0.11 12.4 0.5 0.92 9.4 0.5 2.0 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family FaeA PF04703.12 gi|242398416|ref|YP_002993840.1| - 0.13 12.7 0.3 0.16 12.3 0.3 1.4 1 1 0 1 1 1 0 FaeA-like protein TFIIE_beta PF02186.15 gi|242398416|ref|YP_002993840.1| - 0.15 12.3 2.0 0.22 11.8 2.0 1.5 1 1 0 1 1 1 0 TFIIE beta subunit core domain Auto_anti-p27 PF06677.12 gi|242398417|ref|YP_002993841.1| - 7.6e-14 51.6 0.5 1.2e-13 51.0 0.5 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|242398417|ref|YP_002993841.1| - 0.00021 21.2 0.7 0.023 14.7 0.1 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|242398417|ref|YP_002993841.1| - 0.00072 19.5 0.6 0.0011 18.9 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|242398417|ref|YP_002993841.1| - 0.00099 18.4 1.5 0.071 12.5 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|242398417|ref|YP_002993841.1| - 0.0064 16.2 1.1 3.7 7.4 0.0 2.5 2 0 0 2 2 2 2 zinc-ribbon domain GAT PF03127.14 gi|242398417|ref|YP_002993841.1| - 0.0099 16.2 0.4 0.016 15.5 0.4 1.4 1 0 0 1 1 1 1 GAT domain Nudix_N_2 PF14803.6 gi|242398417|ref|YP_002993841.1| - 0.012 15.5 2.2 0.17 11.8 0.3 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc-ribbons_6 PF07191.12 gi|242398417|ref|YP_002993841.1| - 0.015 15.3 0.3 0.024 14.6 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons Ogr_Delta PF04606.12 gi|242398417|ref|YP_002993841.1| - 0.039 13.9 3.0 2.4 8.2 0.7 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-LITAF-like PF10601.9 gi|242398417|ref|YP_002993841.1| - 0.043 14.1 1.3 0.46 10.8 0.0 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-Mss51 PF13824.6 gi|242398417|ref|YP_002993841.1| - 0.073 13.2 0.0 6.4 7.0 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-NADH-PPase PF09297.11 gi|242398417|ref|YP_002993841.1| - 0.08 12.6 5.0 0.34 10.6 5.0 1.9 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF3837 PF12939.7 gi|242398417|ref|YP_002993841.1| - 0.099 13.1 1.3 0.15 12.5 1.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) NOB1_Zn_bind PF08772.11 gi|242398417|ref|YP_002993841.1| - 0.1 12.8 3.0 2.1 8.5 3.5 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Lar_restr_allev PF14354.6 gi|242398417|ref|YP_002993841.1| - 0.12 12.7 0.5 3.4 8.1 0.0 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-C4_Topoisom PF01396.19 gi|242398417|ref|YP_002993841.1| - 0.14 12.0 3.8 1.3 8.9 3.8 2.3 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.6 gi|242398417|ref|YP_002993841.1| - 0.14 12.0 4.9 0.63 9.8 5.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|242398417|ref|YP_002993841.1| - 0.21 12.1 1.3 9.8 6.8 1.3 2.6 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|242398417|ref|YP_002993841.1| - 0.36 11.0 4.0 1.1 9.5 0.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.6 gi|242398417|ref|YP_002993841.1| - 0.48 11.1 5.1 2 9.2 0.3 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.12 gi|242398417|ref|YP_002993841.1| - 0.57 9.7 3.3 2.5 7.7 3.3 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|242398417|ref|YP_002993841.1| - 1.1 9.3 5.6 9.4 6.3 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.6 gi|242398417|ref|YP_002993841.1| - 1.3 8.4 6.0 8.1 5.9 0.1 2.6 3 0 0 3 3 3 0 Transcription factor zinc-finger Arginase PF00491.21 gi|242398418|ref|YP_002993842.1| - 1.9e-19 70.2 0.0 5.3e-19 68.8 0.0 1.5 1 1 0 1 1 1 1 Arginase family DUF3791 PF12668.7 gi|242398418|ref|YP_002993842.1| - 0.055 13.5 0.3 1.1 9.3 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3791) OMPdecase PF00215.24 gi|242398419|ref|YP_002993843.1| - 5.1e-27 94.9 6.4 6.6e-27 94.6 5.3 1.7 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family SIS PF01380.22 gi|242398419|ref|YP_002993843.1| - 4.2e-21 75.2 0.0 1.1e-20 73.8 0.0 1.7 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|242398419|ref|YP_002993843.1| - 5.5e-09 36.2 5.4 2.4e-07 30.9 0.2 3.0 2 1 1 3 3 3 2 SIS domain HMGL-like PF00682.19 gi|242398419|ref|YP_002993843.1| - 1.1e-06 28.4 3.3 9e-05 22.1 0.3 2.3 1 1 1 2 2 2 2 HMGL-like TMP-TENI PF02581.17 gi|242398419|ref|YP_002993843.1| - 1.3e-06 27.9 1.1 3.4e-06 26.5 1.1 1.8 1 1 0 1 1 1 1 Thiamine monophosphate synthase ThiG PF05690.14 gi|242398419|ref|YP_002993843.1| - 1.7e-06 27.5 0.4 3.2e-06 26.6 0.4 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NanE PF04131.14 gi|242398419|ref|YP_002993843.1| - 1.3e-05 24.5 1.7 3e-05 23.3 1.7 1.7 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|242398419|ref|YP_002993843.1| - 1.4e-05 24.7 0.9 0.0001 21.8 0.4 2.1 1 1 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.12 gi|242398419|ref|YP_002993843.1| - 2.8e-05 23.4 0.4 0.00014 21.2 0.4 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF561) PEP_mutase PF13714.6 gi|242398419|ref|YP_002993843.1| - 0.00019 21.0 3.9 0.018 14.5 0.2 2.9 2 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase IGPS PF00218.21 gi|242398419|ref|YP_002993843.1| - 0.00026 20.3 0.4 0.00066 18.9 0.4 1.8 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Ribul_P_3_epim PF00834.19 gi|242398419|ref|YP_002993843.1| - 0.0015 17.9 3.4 0.0033 16.8 1.9 2.2 2 1 0 2 2 2 1 Ribulose-phosphate 3 epimerase family Dus PF01207.17 gi|242398419|ref|YP_002993843.1| - 0.022 13.9 2.1 0.12 11.4 2.1 2.1 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) Trp_syntA PF00290.20 gi|242398419|ref|YP_002993843.1| - 0.045 12.6 3.3 3.7 6.3 1.1 3.0 2 1 1 3 3 3 0 Tryptophan synthase alpha chain QRPTase_C PF01729.19 gi|242398419|ref|YP_002993843.1| - 0.052 13.3 6.8 0.13 12.0 0.1 3.0 2 1 1 3 3 3 0 Quinolinate phosphoribosyl transferase, C-terminal domain AP_endonuc_2 PF01261.24 gi|242398419|ref|YP_002993843.1| - 0.07 12.5 0.1 0.27 10.6 0.1 2.1 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel IMPDH PF00478.25 gi|242398419|ref|YP_002993843.1| - 0.21 10.5 6.1 2.2 7.2 6.2 2.4 1 1 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain FtsZ_C PF12327.8 gi|242398420|ref|YP_002993844.1| - 0.013 15.8 0.0 0.025 14.9 0.0 1.3 1 0 0 1 1 1 0 FtsZ family, C-terminal domain HAD_2 PF13419.6 gi|242398421|ref|YP_002993845.1| - 1e-28 100.7 0.0 1.3e-28 100.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242398421|ref|YP_002993845.1| - 9.3e-19 68.6 0.0 1.5e-13 51.5 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|242398421|ref|YP_002993845.1| - 7.7e-08 32.3 0.0 1.2e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|242398421|ref|YP_002993845.1| - 4.6e-06 27.2 0.0 7.4e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|242398421|ref|YP_002993845.1| - 0.016 15.3 0.0 0.099 12.8 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|242398421|ref|YP_002993845.1| - 0.072 12.8 0.1 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF4392 PF14336.6 gi|242398423|ref|YP_002993847.1| - 3.8e-67 226.8 0.0 4.6e-65 220.0 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4392) HD PF01966.22 gi|242398424|ref|YP_002993848.1| - 3e-18 66.2 2.5 3.1e-18 66.2 1.1 1.8 2 0 0 2 2 2 1 HD domain DUF5330 PF17264.2 gi|242398424|ref|YP_002993848.1| - 0.055 13.5 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5330) KH_5 PF13184.6 gi|242398425|ref|YP_002993849.1| - 1.7e-09 37.6 0.4 4.1e-09 36.4 0.4 1.7 1 0 0 1 1 1 1 NusA-like KH domain KH_2 PF07650.17 gi|242398425|ref|YP_002993849.1| - 4.6e-07 29.6 3.2 5.6e-07 29.3 1.8 1.9 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|242398425|ref|YP_002993849.1| - 7.3e-06 25.7 0.4 1.4e-05 24.8 0.4 1.5 1 0 0 1 1 1 1 KH domain Ribosomal_S7e PF01251.18 gi|242398425|ref|YP_002993849.1| - 0.00014 21.7 0.3 0.00042 20.1 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein S7e KH_4 PF13083.6 gi|242398425|ref|YP_002993849.1| - 0.014 15.2 1.0 0.047 13.6 0.4 2.1 2 0 0 2 2 2 0 KH domain tRNA-synt_2 PF00152.20 gi|242398426|ref|YP_002993850.1| - 4e-93 311.9 2.0 4.8e-93 311.7 2.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|242398426|ref|YP_002993850.1| - 2.1e-13 50.0 0.1 4.1e-13 49.1 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain CARDB PF07705.11 gi|242398427|ref|YP_002993851.1| - 0.044 14.0 0.1 3 8.2 0.0 2.9 2 0 0 2 2 2 0 CARDB DUF4115 PF13464.6 gi|242398427|ref|YP_002993851.1| - 0.15 12.3 0.0 4.8 7.4 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4115) DUF4381 PF14316.6 gi|242398427|ref|YP_002993851.1| - 0.17 12.1 0.0 0.28 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) BatD PF13584.6 gi|242398427|ref|YP_002993851.1| - 0.23 10.2 5.2 0.038 12.8 0.4 2.2 3 1 0 3 3 3 0 Oxygen tolerance PTH2 PF01981.16 gi|242398428|ref|YP_002993852.1| - 1.2e-43 148.2 0.0 1.3e-43 148.0 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TruD PF01142.18 gi|242398429|ref|YP_002993853.1| - 1.4e-135 452.4 0.0 1.7e-135 452.1 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Hydrolase_3 PF08282.12 gi|242398430|ref|YP_002993854.1| - 2.2e-30 106.2 0.1 7.2e-19 68.5 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242398430|ref|YP_002993854.1| - 9e-12 45.7 0.1 1.1e-06 29.1 0.0 3.0 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|242398430|ref|YP_002993854.1| - 0.00019 21.0 0.0 0.00056 19.5 0.0 1.9 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD_2 PF13419.6 gi|242398430|ref|YP_002993854.1| - 0.0015 18.6 0.0 0.0029 17.7 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|242398430|ref|YP_002993854.1| - 0.0036 17.4 0.0 0.0078 16.3 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|242398430|ref|YP_002993854.1| - 0.0041 17.6 0.2 4.6 7.6 0.0 2.8 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|242398430|ref|YP_002993854.1| - 0.044 12.9 0.0 0.15 11.2 0.0 1.8 2 0 0 2 2 2 0 Trehalose-phosphatase DUF3889 PF13028.6 gi|242398430|ref|YP_002993854.1| - 0.05 13.5 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3889) OMPdecase PF00215.24 gi|242398431|ref|YP_002993855.1| - 7.9e-26 91.0 0.0 9.3e-26 90.8 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Peptidase_S66C PF17676.1 gi|242398431|ref|YP_002993855.1| - 0.003 18.1 0.0 0.31 11.6 0.0 2.5 2 0 0 2 2 2 2 LD-carboxypeptidase C-terminal domain DHO_dh PF01180.21 gi|242398432|ref|YP_002993856.1| - 7.9e-71 238.7 0.3 9.1e-71 238.5 0.3 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|242398432|ref|YP_002993856.1| - 0.00054 19.1 1.4 0.0054 15.9 1.4 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) Oxidored_FMN PF00724.20 gi|242398432|ref|YP_002993856.1| - 0.00082 18.7 0.5 0.15 11.3 0.0 2.7 2 1 1 3 3 3 1 NADH:flavin oxidoreductase / NADH oxidase family IMPDH PF00478.25 gi|242398432|ref|YP_002993856.1| - 0.00095 18.3 3.0 0.0018 17.4 3.0 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|242398432|ref|YP_002993856.1| - 0.0029 17.0 3.0 0.0076 15.7 0.7 1.9 1 1 1 2 2 2 1 Nitronate monooxygenase PcrB PF01884.17 gi|242398432|ref|YP_002993856.1| - 0.037 13.5 0.8 1.1 8.7 0.1 2.2 1 1 1 2 2 2 0 PcrB family His_biosynth PF00977.21 gi|242398432|ref|YP_002993856.1| - 0.044 13.2 0.0 0.17 11.3 0.0 1.8 2 0 0 2 2 2 0 Histidine biosynthesis protein DUF561 PF04481.12 gi|242398432|ref|YP_002993856.1| - 0.085 12.0 0.2 0.83 8.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF561) TMP-TENI PF02581.17 gi|242398432|ref|YP_002993856.1| - 0.11 11.8 0.5 0.28 10.5 0.1 1.8 2 0 0 2 2 2 0 Thiamine monophosphate synthase FMN_dh PF01070.18 gi|242398432|ref|YP_002993856.1| - 0.8 8.7 7.8 9.6 5.1 6.4 2.5 2 1 0 2 2 2 0 FMN-dependent dehydrogenase DHODB_Fe-S_bind PF10418.9 gi|242398433|ref|YP_002993857.1| - 2.3e-12 46.5 3.3 3.9e-12 45.8 3.3 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|242398433|ref|YP_002993857.1| - 6.3e-05 23.3 0.0 0.0001 22.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer2_3 PF13085.6 gi|242398433|ref|YP_002993857.1| - 0.094 12.7 1.8 0.25 11.4 1.8 1.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain NAD_binding_1 PF00175.21 gi|242398433|ref|YP_002993857.1| - 0.28 11.8 1.0 16 6.2 0.0 2.3 1 1 1 2 2 2 0 Oxidoreductase NAD-binding domain Fer2 PF00111.27 gi|242398433|ref|YP_002993857.1| - 0.33 10.9 3.1 0.29 11.1 0.9 1.9 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Amidohydro_1 PF01979.20 gi|242398434|ref|YP_002993858.1| - 1.3e-34 120.0 0.1 1.7e-34 119.7 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|242398434|ref|YP_002993858.1| - 8.5e-15 55.2 0.0 3.4e-06 26.8 0.1 2.3 2 0 0 2 2 2 2 Amidohydrolase family DHOase PF12890.7 gi|242398434|ref|YP_002993858.1| - 4.2e-12 46.2 0.0 6.4e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Dihydro-orotase-like SspH PF08141.12 gi|242398434|ref|YP_002993858.1| - 0.048 13.8 0.1 0.13 12.5 0.1 1.7 1 0 0 1 1 1 0 Small acid-soluble spore protein H family PyrI PF01948.18 gi|242398435|ref|YP_002993859.1| - 1.9e-31 108.2 5.7 1.9e-31 108.2 5.7 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|242398435|ref|YP_002993859.1| - 7.1e-20 70.6 6.0 1.2e-19 69.9 6.0 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain PriA_CRR PF18319.1 gi|242398435|ref|YP_002993859.1| - 0.018 15.0 0.4 0.031 14.3 0.4 1.4 1 0 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain zf-C2HE PF16278.5 gi|242398435|ref|YP_002993859.1| - 0.039 14.4 0.1 0.068 13.6 0.1 1.5 1 0 0 1 1 1 0 C2HE / C2H2 / C2HC zinc-binding finger RD3 PF14473.6 gi|242398435|ref|YP_002993859.1| - 0.064 13.1 0.1 0.088 12.6 0.1 1.3 1 0 0 1 1 1 0 RD3 protein OTCace_N PF02729.21 gi|242398436|ref|YP_002993860.1| - 1.8e-50 170.8 0.0 3.1e-50 170.0 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|242398436|ref|YP_002993860.1| - 7.1e-31 107.4 0.0 1.1e-30 106.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Shikimate_DH PF01488.20 gi|242398436|ref|YP_002993860.1| - 0.0023 18.0 0.0 0.0057 16.7 0.0 1.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Pribosyltran PF00156.27 gi|242398437|ref|YP_002993861.1| - 5.5e-24 84.5 1.2 7e-24 84.1 1.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|242398437|ref|YP_002993861.1| - 0.00094 18.7 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF2529 PF10740.9 gi|242398437|ref|YP_002993861.1| - 0.082 12.5 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2529) TrmB PF01978.19 gi|242398438|ref|YP_002993862.1| - 8.1e-05 22.4 0.2 0.00011 22.1 0.2 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|242398438|ref|YP_002993862.1| - 0.0012 19.2 0.0 0.0015 18.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|242398438|ref|YP_002993862.1| - 0.0013 18.5 0.1 0.0023 17.7 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|242398438|ref|YP_002993862.1| - 0.0069 16.4 0.0 0.0086 16.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|242398438|ref|YP_002993862.1| - 0.038 14.2 0.1 0.063 13.5 0.1 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|242398438|ref|YP_002993862.1| - 0.042 13.8 0.2 0.077 12.9 0.2 1.4 1 0 0 1 1 1 0 MarR family FeoC PF09012.10 gi|242398438|ref|YP_002993862.1| - 0.057 13.5 0.0 0.083 13.0 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator AphA_like PF14557.6 gi|242398438|ref|YP_002993862.1| - 0.084 12.6 0.0 0.097 12.4 0.0 1.1 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator HTH_Crp_2 PF13545.6 gi|242398438|ref|YP_002993862.1| - 0.12 12.4 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain tRNA_U5-meth_tr PF05958.11 gi|242398439|ref|YP_002993863.1| - 3.5e-23 82.2 0.3 6.6e-21 74.7 0.1 2.5 2 1 0 2 2 2 1 tRNA (Uracil-5-)-methyltransferase Met_10 PF02475.16 gi|242398439|ref|YP_002993863.1| - 3.4e-08 33.5 0.1 6.5e-08 32.6 0.1 1.4 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|242398439|ref|YP_002993863.1| - 9.8e-08 31.7 0.0 1.8e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|242398439|ref|YP_002993863.1| - 6e-05 23.7 0.0 0.00022 21.8 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|242398439|ref|YP_002993863.1| - 0.00014 21.7 0.0 0.00032 20.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|242398439|ref|YP_002993863.1| - 0.00017 21.1 0.0 0.00027 20.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|242398439|ref|YP_002993863.1| - 0.00082 19.0 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|242398439|ref|YP_002993863.1| - 0.001 18.7 0.0 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|242398439|ref|YP_002993863.1| - 0.0034 17.2 0.0 0.0094 15.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|242398439|ref|YP_002993863.1| - 0.01 15.2 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB HTH_AsnC-type PF13404.6 gi|242398440|ref|YP_002993864.1| - 2e-14 53.1 1.0 3.4e-14 52.4 1.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|242398440|ref|YP_002993864.1| - 5.4e-14 51.5 0.4 8.8e-14 50.8 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|242398440|ref|YP_002993864.1| - 1.1e-12 47.8 0.0 1.8e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|242398440|ref|YP_002993864.1| - 6.5e-08 32.4 0.2 1.1e-07 31.7 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|242398440|ref|YP_002993864.1| - 5.8e-06 26.3 0.0 1.2e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|242398440|ref|YP_002993864.1| - 1.2e-05 25.0 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 gi|242398440|ref|YP_002993864.1| - 2e-05 24.0 0.3 5.6e-05 22.6 0.3 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 HxlR PF01638.17 gi|242398440|ref|YP_002993864.1| - 2.2e-05 24.2 0.1 2.9e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|242398440|ref|YP_002993864.1| - 9.2e-05 22.3 0.1 0.00029 20.7 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.12 gi|242398440|ref|YP_002993864.1| - 0.00018 21.1 0.3 0.00034 20.3 0.2 1.5 1 1 0 1 1 1 1 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|242398440|ref|YP_002993864.1| - 0.00041 20.0 0.1 0.0014 18.3 0.1 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_Mga PF08280.11 gi|242398440|ref|YP_002993864.1| - 0.00044 20.2 0.0 0.00081 19.4 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.6 gi|242398440|ref|YP_002993864.1| - 0.00068 19.7 0.1 0.0011 19.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|242398440|ref|YP_002993864.1| - 0.00073 19.4 0.0 0.0023 17.8 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|242398440|ref|YP_002993864.1| - 0.0014 18.3 0.1 0.0022 17.7 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.19 gi|242398440|ref|YP_002993864.1| - 0.0017 18.2 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|242398440|ref|YP_002993864.1| - 0.0019 17.9 0.0 0.0046 16.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain FaeA PF04703.12 gi|242398440|ref|YP_002993864.1| - 0.0026 18.1 0.1 0.0046 17.3 0.1 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_36 PF13730.6 gi|242398440|ref|YP_002993864.1| - 0.0033 17.3 0.0 0.0084 16.0 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|242398440|ref|YP_002993864.1| - 0.004 16.5 0.1 0.0074 15.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Rrf2 PF02082.20 gi|242398440|ref|YP_002993864.1| - 0.0059 16.9 0.0 0.018 15.3 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|242398440|ref|YP_002993864.1| - 0.0086 15.9 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_50 PF18024.1 gi|242398440|ref|YP_002993864.1| - 0.011 15.3 0.0 0.027 14.1 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2805 PF10985.8 gi|242398440|ref|YP_002993864.1| - 0.011 16.1 0.1 0.018 15.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2805) HTH_9 PF08221.11 gi|242398440|ref|YP_002993864.1| - 0.012 15.7 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_27 PF13463.6 gi|242398440|ref|YP_002993864.1| - 0.012 16.0 0.1 0.019 15.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain GerE PF00196.19 gi|242398440|ref|YP_002993864.1| - 0.015 14.9 0.1 0.026 14.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Crp_2 PF13545.6 gi|242398440|ref|YP_002993864.1| - 0.015 15.2 0.4 0.037 14.0 0.2 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|242398440|ref|YP_002993864.1| - 0.018 14.8 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_29 PF13551.6 gi|242398440|ref|YP_002993864.1| - 0.021 14.9 0.0 0.036 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Mga PF05043.13 gi|242398440|ref|YP_002993864.1| - 0.021 15.4 0.0 0.071 13.7 0.0 1.7 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_12 PF08461.10 gi|242398440|ref|YP_002993864.1| - 0.023 14.6 0.0 0.048 13.6 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_1 PF00126.27 gi|242398440|ref|YP_002993864.1| - 0.03 14.3 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF2774 PF11242.8 gi|242398440|ref|YP_002993864.1| - 0.039 14.2 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) NapD PF03927.13 gi|242398440|ref|YP_002993864.1| - 0.044 13.8 0.0 0.074 13.1 0.0 1.3 1 0 0 1 1 1 0 NapD protein GntR PF00392.21 gi|242398440|ref|YP_002993864.1| - 0.046 13.4 0.1 0.079 12.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4423 PF14394.6 gi|242398440|ref|YP_002993864.1| - 0.065 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) P22_Cro PF14549.6 gi|242398440|ref|YP_002993864.1| - 0.081 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro RWP-RK PF02042.15 gi|242398440|ref|YP_002993864.1| - 0.086 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 RWP-RK domain RepL PF05732.11 gi|242398440|ref|YP_002993864.1| - 0.12 11.7 0.2 0.21 11.0 0.0 1.4 2 0 0 2 2 1 0 Firmicute plasmid replication protein (RepL) Fe_dep_repress PF01325.19 gi|242398440|ref|YP_002993864.1| - 0.13 12.5 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.6 gi|242398440|ref|YP_002993864.1| - 0.16 11.8 0.0 0.46 10.3 0.0 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Na_H_Exchanger PF00999.21 gi|242398441|ref|YP_002993865.1| - 1.5e-69 234.7 41.3 1.7e-69 234.4 41.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Na_H_Exchanger PF00999.21 gi|242398442|ref|YP_002993866.1| - 9.2e-72 241.9 39.0 1.1e-71 241.7 39.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.28 gi|242398443|ref|YP_002993867.1| - 8.3e-27 93.4 5.1 1.6e-12 47.6 0.1 2.3 2 0 0 2 2 2 2 CBS domain Acetyltransf_10 PF13673.7 gi|242398443|ref|YP_002993867.1| - 0.009 16.0 0.0 1.4 8.9 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain PulA_N1 PF17999.1 gi|242398443|ref|YP_002993867.1| - 0.11 13.2 0.3 1.2 10.0 0.0 2.3 2 1 0 2 2 2 0 Pullulanase N1-terminal domain Pyr_redox_2 PF07992.14 gi|242398444|ref|YP_002993868.1| - 6.2e-17 61.8 0.4 1.2e-05 24.7 0.0 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|242398444|ref|YP_002993868.1| - 1.4e-09 38.0 0.3 6.7e-06 25.9 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|242398444|ref|YP_002993868.1| - 1.5e-08 34.2 0.6 0.00027 20.1 0.0 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|242398444|ref|YP_002993868.1| - 9.2e-08 31.2 0.1 8.2e-06 24.8 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|242398444|ref|YP_002993868.1| - 1.1e-07 31.4 0.1 3.3e-07 29.8 0.1 1.8 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|242398444|ref|YP_002993868.1| - 1.6e-06 27.5 1.5 1.1e-05 24.8 0.2 2.6 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|242398444|ref|YP_002993868.1| - 1.7e-05 25.0 0.0 0.00024 21.3 0.0 2.8 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|242398444|ref|YP_002993868.1| - 2.5e-05 23.5 0.3 0.00015 21.0 0.2 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|242398444|ref|YP_002993868.1| - 7.4e-05 23.2 0.4 0.35 11.5 0.1 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|242398444|ref|YP_002993868.1| - 0.00077 18.8 1.2 0.003 16.9 0.1 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|242398444|ref|YP_002993868.1| - 0.00081 18.7 0.1 0.0046 16.3 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|242398444|ref|YP_002993868.1| - 0.019 14.4 0.3 0.41 9.9 0.2 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|242398444|ref|YP_002993868.1| - 0.043 13.8 0.0 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding ATP_bind_3 PF01171.20 gi|242398445|ref|YP_002993869.1| - 2.6e-10 40.3 0.0 4.5e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 PP-loop family ThiI PF02568.14 gi|242398445|ref|YP_002993869.1| - 5.6e-08 32.6 0.0 1.7e-07 31.0 0.0 1.8 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|242398445|ref|YP_002993869.1| - 4.2e-07 29.7 0.0 2.9e-06 26.9 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|242398445|ref|YP_002993869.1| - 5.2e-07 28.8 0.1 1e-06 27.8 0.1 1.6 1 1 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|242398445|ref|YP_002993869.1| - 0.00063 18.9 0.0 0.0013 17.9 0.0 1.5 2 0 0 2 2 2 1 NAD synthase PAPS_reduct PF01507.19 gi|242398445|ref|YP_002993869.1| - 0.00073 19.6 0.0 0.0013 18.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.15 gi|242398445|ref|YP_002993869.1| - 0.019 14.5 2.0 0.019 14.5 2.0 2.7 3 0 0 3 3 3 0 RecR protein DUF1241 PF06840.11 gi|242398445|ref|YP_002993869.1| - 0.037 13.7 0.0 0.071 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) Asn_synthase PF00733.21 gi|242398445|ref|YP_002993869.1| - 0.075 12.7 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Transp_Tc5_C PF04236.15 gi|242398445|ref|YP_002993869.1| - 0.73 10.2 7.8 0.11 12.9 1.4 2.5 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain C1_2 PF03107.16 gi|242398445|ref|YP_002993869.1| - 0.91 9.9 9.5 0.97 9.8 1.3 3.3 3 0 0 3 3 3 0 C1 domain DUF1926 PF09095.11 gi|242398446|ref|YP_002993870.1| - 4.6e-75 252.8 0.2 1.1e-74 251.5 0.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1926) Glyco_hydro_57 PF03065.15 gi|242398446|ref|YP_002993870.1| - 5.3e-59 200.0 6.7 2.3e-58 198.0 2.1 2.8 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 DUF1925 PF09094.11 gi|242398446|ref|YP_002993870.1| - 5.1e-35 119.6 0.9 1e-34 118.6 0.9 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glyco_hydro_38N PF01074.22 gi|242398446|ref|YP_002993870.1| - 5.5e-06 26.0 0.0 0.00041 19.8 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolases family 38 N-terminal domain HGD-D PF06050.13 gi|242398446|ref|YP_002993870.1| - 0.019 14.8 0.0 0.14 11.9 0.0 2.0 2 0 0 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component CoA_binding_2 PF13380.6 gi|242398446|ref|YP_002993870.1| - 0.12 12.9 0.1 0.36 11.3 0.1 1.8 2 0 0 2 2 2 0 CoA binding domain Gly-zipper_YMGG PF13441.6 gi|242398447|ref|YP_002993871.1| - 0.0078 15.9 0.0 0.028 14.2 0.0 1.9 1 1 1 2 2 2 2 YMGG-like Gly-zipper MHC2-interact PF09307.10 gi|242398447|ref|YP_002993871.1| - 0.23 11.5 0.1 0.39 10.7 0.1 1.3 1 0 0 1 1 1 0 CLIP, MHC2 interacting HAD_2 PF13419.6 gi|242398448|ref|YP_002993872.1| - 1.8e-23 83.5 0.4 2.9e-23 82.9 0.0 1.5 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242398448|ref|YP_002993872.1| - 1.4e-12 48.4 0.0 3.6e-12 47.0 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|242398448|ref|YP_002993872.1| - 2.2e-11 43.7 0.0 4.9e-11 42.5 0.0 1.6 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|242398448|ref|YP_002993872.1| - 9.4e-08 32.7 0.1 1.7e-07 31.8 0.0 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase NT5C PF06941.12 gi|242398448|ref|YP_002993872.1| - 0.00028 20.8 0.1 0.037 13.9 0.0 2.7 2 1 0 2 2 2 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Hydrolase_6 PF13344.6 gi|242398448|ref|YP_002993872.1| - 0.00049 20.2 0.0 0.0023 18.0 0.0 2.1 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|242398448|ref|YP_002993872.1| - 0.0012 18.5 1.5 0.0023 17.5 0.0 2.4 3 1 0 3 3 3 1 Mitochondrial PGP phosphatase NIF PF03031.18 gi|242398448|ref|YP_002993872.1| - 0.022 14.5 0.7 0.23 11.2 0.7 2.3 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase Put_Phosphatase PF06888.12 gi|242398448|ref|YP_002993872.1| - 0.027 13.9 0.1 0.06 12.7 0.1 1.6 1 1 1 2 2 2 0 Putative Phosphatase Acid_phosphat_B PF03767.14 gi|242398448|ref|YP_002993872.1| - 0.053 13.1 0.0 0.54 9.8 0.0 2.3 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) RACo_linker PF17650.1 gi|242398448|ref|YP_002993872.1| - 0.11 12.3 0.2 0.21 11.5 0.2 1.4 1 0 0 1 1 1 0 RACo linker region DUF131 PF01998.17 gi|242398449|ref|YP_002993873.1| - 2.5e-15 55.9 7.8 2.5e-15 55.9 7.8 1.6 1 1 1 2 2 2 1 Protein of unknown function DUF131 Na_H_Exchanger PF00999.21 gi|242398450|ref|YP_002993874.1| - 1.2e-53 182.3 46.2 1.5e-53 181.9 46.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Cons_hypoth698 PF03601.14 gi|242398450|ref|YP_002993874.1| - 0.095 11.6 27.1 0.033 13.1 11.8 3.7 2 1 1 3 3 3 0 Conserved hypothetical protein 698 Ldr_toxin PF13940.6 gi|242398450|ref|YP_002993874.1| - 2.4 8.3 8.4 8.6 6.5 0.4 3.5 3 0 0 3 3 3 0 Toxin Ldr, type I toxin-antitoxin system Pyridoxal_deC PF00282.19 gi|242398451|ref|YP_002993875.1| - 7.2e-34 117.1 0.0 2.6e-33 115.3 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|242398451|ref|YP_002993875.1| - 4.3e-11 42.4 0.0 1.6e-09 37.2 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|242398451|ref|YP_002993875.1| - 7.6e-09 35.3 0.3 4.9e-08 32.7 0.0 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|242398451|ref|YP_002993875.1| - 0.00015 21.1 0.0 0.00029 20.2 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 gi|242398451|ref|YP_002993875.1| - 0.00052 18.8 0.0 0.067 11.9 0.0 2.3 2 0 0 2 2 2 2 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_1_2 PF00155.21 gi|242398451|ref|YP_002993875.1| - 0.011 15.0 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II DUF1492 PF07374.11 gi|242398452|ref|YP_002993876.1| - 0.076 13.2 0.1 0.078 13.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) Phos_pyr_kin PF08543.12 gi|242398453|ref|YP_002993877.1| - 4.4e-94 314.5 1.1 5.4e-94 314.2 1.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|242398453|ref|YP_002993877.1| - 1e-59 200.8 0.0 2.7e-59 199.5 0.0 1.7 2 0 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|242398453|ref|YP_002993877.1| - 1.1e-13 51.2 0.3 4.1e-13 49.3 0.2 1.9 2 1 0 2 2 2 1 pfkB family carbohydrate kinase HK PF02110.15 gi|242398453|ref|YP_002993877.1| - 0.002 17.6 2.6 0.007 15.8 2.5 1.8 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family ThiW PF09512.10 gi|242398454|ref|YP_002993878.1| - 8.7e-43 146.0 13.5 9.7e-43 145.8 13.5 1.0 1 0 0 1 1 1 1 Thiamine-precursor transporter protein (ThiW) ECF_trnsprt PF12822.7 gi|242398454|ref|YP_002993878.1| - 1.3e-05 25.3 22.8 5.8e-05 23.3 22.8 1.9 1 1 0 1 1 1 1 ECF transporter, substrate-specific component 5TM-5TMR_LYT PF07694.12 gi|242398454|ref|YP_002993878.1| - 7.7e-05 22.3 12.9 0.00013 21.5 12.9 1.4 1 1 0 1 1 1 1 5TMR of 5TMR-LYT ArAE_1 PF06081.11 gi|242398454|ref|YP_002993878.1| - 0.15 12.2 3.1 0.3 11.2 0.8 2.5 2 1 0 2 2 2 0 Aromatic acid exporter family member 1 DUF4229 PF14012.6 gi|242398454|ref|YP_002993878.1| - 3.9 7.6 8.6 0.52 10.5 0.8 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF4229) TMP-TENI PF02581.17 gi|242398455|ref|YP_002993879.1| - 8.7e-61 204.4 0.2 1e-60 204.2 0.2 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|242398455|ref|YP_002993879.1| - 4.7e-08 32.8 0.7 5.7e-08 32.5 0.7 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase NanE PF04131.14 gi|242398455|ref|YP_002993879.1| - 0.00013 21.2 0.1 0.00018 20.7 0.1 1.2 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|242398455|ref|YP_002993879.1| - 0.00036 19.9 0.1 0.0006 19.2 0.1 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|242398455|ref|YP_002993879.1| - 0.00098 18.6 2.1 0.016 14.7 0.6 2.2 1 1 1 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.12 gi|242398455|ref|YP_002993879.1| - 0.0025 17.0 0.2 0.0067 15.6 0.2 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF561) IGPS PF00218.21 gi|242398455|ref|YP_002993879.1| - 0.011 14.9 0.4 0.032 13.4 0.1 1.8 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 gi|242398455|ref|YP_002993879.1| - 0.023 14.5 0.1 0.061 13.1 0.0 1.8 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain HK PF02110.15 gi|242398456|ref|YP_002993880.1| - 3.7e-86 288.5 0.3 4.2e-86 288.3 0.3 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|242398456|ref|YP_002993880.1| - 3.9e-09 36.4 0.3 5e-09 36.0 0.3 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|242398456|ref|YP_002993880.1| - 1.2e-06 28.2 0.6 1.6e-06 27.7 0.6 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DUF3392 PF11872.8 gi|242398456|ref|YP_002993880.1| - 0.13 12.5 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3392) TENA_THI-4 PF03070.16 gi|242398457|ref|YP_002993881.1| - 1e-47 162.7 3.5 1.1e-47 162.5 3.5 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Transp_cyt_pur PF02133.15 gi|242398458|ref|YP_002993882.1| - 3.1e-46 158.0 27.4 3.9e-46 157.7 27.4 1.1 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin US30 PF17624.2 gi|242398458|ref|YP_002993882.1| - 0.21 10.6 2.1 0.28 10.2 0.2 1.8 2 0 0 2 2 2 0 Family of unknown function UPF0020 PF01170.18 gi|242398459|ref|YP_002993883.1| - 1e-29 103.6 0.0 1.3e-28 100.1 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|242398459|ref|YP_002993883.1| - 1.9e-14 54.0 0.0 4.7e-14 52.7 0.0 1.7 2 0 0 2 2 2 1 THUMP domain Methyltransf_31 PF13847.6 gi|242398459|ref|YP_002993883.1| - 4.1e-10 39.6 0.0 6.1e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|242398459|ref|YP_002993883.1| - 3e-08 33.6 0.0 9.9e-06 25.4 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_25 PF13649.6 gi|242398459|ref|YP_002993883.1| - 7.1e-08 33.1 0.0 1.5e-07 32.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|242398459|ref|YP_002993883.1| - 8.9e-08 32.0 0.0 1.5e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|242398459|ref|YP_002993883.1| - 1.6e-06 27.8 0.0 2.6e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|242398459|ref|YP_002993883.1| - 1.9e-06 27.4 0.0 2.9e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_11 PF08241.12 gi|242398459|ref|YP_002993883.1| - 8.2e-05 23.2 0.0 0.00015 22.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|242398459|ref|YP_002993883.1| - 0.00021 20.8 0.0 0.02 14.3 0.0 2.1 1 1 1 2 2 2 1 RRNA methyltransferase AviRa MTS PF05175.14 gi|242398459|ref|YP_002993883.1| - 0.0017 17.9 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|242398459|ref|YP_002993883.1| - 0.03 14.1 0.0 0.21 11.4 0.0 2.1 1 1 0 2 2 2 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|242398459|ref|YP_002993883.1| - 0.045 13.2 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase N6-adenineMlase PF10237.9 gi|242398459|ref|YP_002993883.1| - 0.046 13.5 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase Methyltransf_12 PF08242.12 gi|242398459|ref|YP_002993883.1| - 0.06 14.1 0.0 0.12 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|242398459|ref|YP_002993883.1| - 0.11 11.9 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) SHOCT PF09851.9 gi|242398460|ref|YP_002993884.1| - 0.0073 16.0 0.2 0.0073 16.0 0.2 3.8 4 1 0 4 4 4 1 Short C-terminal domain CM_2 PF01817.21 gi|242398460|ref|YP_002993884.1| - 0.035 14.5 0.7 0.39 11.1 0.1 2.4 2 0 0 2 2 2 0 Chorismate mutase type II tRNA_Me_trans PF03054.16 gi|242398460|ref|YP_002993884.1| - 0.19 10.5 0.0 0.25 10.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase MoCF_biosynth PF00994.24 gi|242398461|ref|YP_002993885.1| - 9.1e-35 119.4 0.0 1.5e-34 118.8 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain ScsC_N PF18312.1 gi|242398461|ref|YP_002993885.1| - 0.088 12.6 0.8 0.18 11.6 0.4 1.8 2 0 0 2 2 2 0 Copper resistance protein ScsC N-terminal domain B12-binding PF02310.19 gi|242398461|ref|YP_002993885.1| - 0.13 12.3 0.1 0.37 10.8 0.0 1.7 1 1 0 1 1 1 0 B12 binding domain PK PF00224.21 gi|242398462|ref|YP_002993886.1| - 1.4e-117 392.4 8.7 2.1e-117 391.9 8.7 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|242398462|ref|YP_002993886.1| - 1.1e-23 83.6 0.1 1.1e-21 77.3 0.0 3.1 3 1 0 3 3 3 1 Pyruvate kinase, alpha/beta domain IMPDH PF00478.25 gi|242398462|ref|YP_002993886.1| - 0.00069 18.7 0.8 0.0019 17.2 0.3 1.9 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain HpcH_HpaI PF03328.14 gi|242398462|ref|YP_002993886.1| - 0.0019 17.4 0.1 0.0073 15.5 0.0 1.9 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family DUF3006 PF11213.8 gi|242398462|ref|YP_002993886.1| - 0.029 14.6 0.6 1.2 9.4 0.1 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3006) Paz_1 PF18349.1 gi|242398462|ref|YP_002993886.1| - 0.14 12.2 0.2 0.76 9.8 0.0 2.3 2 0 0 2 2 2 0 PAZ domain DUF4199 PF13858.6 gi|242398464|ref|YP_002993888.1| - 0.033 14.6 0.0 0.038 14.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) PGA2 PF07543.12 gi|242398464|ref|YP_002993888.1| - 0.038 14.0 0.0 0.043 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein trafficking PGA2 OFeT_1 PF16955.5 gi|242398464|ref|YP_002993888.1| - 0.067 12.9 0.1 0.068 12.9 0.1 1.0 1 0 0 1 1 1 0 Ferrous iron uptake permease, iron-lead transporter ERGIC_N PF13850.6 gi|242398464|ref|YP_002993888.1| - 0.096 13.0 0.0 0.1 13.0 0.0 1.1 1 0 0 1 1 1 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) Radical_SAM PF04055.21 gi|242398466|ref|YP_002993890.1| - 4.1e-16 59.8 0.1 9.2e-15 55.4 0.0 2.7 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|242398466|ref|YP_002993890.1| - 1.1e-08 35.5 0.0 2.5e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|242398466|ref|YP_002993890.1| - 2.8e-07 30.7 0.7 5.2e-07 29.8 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain AFOR_C PF01314.18 gi|242398467|ref|YP_002993891.1| - 3.7e-108 362.0 0.2 4.5e-108 361.7 0.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|242398467|ref|YP_002993891.1| - 6.7e-76 254.6 1.3 9.3e-76 254.1 1.3 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF2512 PF10710.9 gi|242398468|ref|YP_002993892.1| - 0.014 15.0 0.7 0.015 15.0 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) FixQ PF05545.11 gi|242398468|ref|YP_002993892.1| - 0.018 15.0 4.3 0.9 9.6 0.9 2.1 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF4131 PF13567.6 gi|242398468|ref|YP_002993892.1| - 0.064 12.9 1.3 0.067 12.8 1.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Orai-1 PF07856.12 gi|242398468|ref|YP_002993892.1| - 0.069 12.8 2.1 0.071 12.8 2.1 1.1 1 0 0 1 1 1 0 Mediator of CRAC channel activity Vma12 PF11712.8 gi|242398468|ref|YP_002993892.1| - 0.25 11.4 1.2 0.29 11.2 1.2 1.0 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase SLC3A2_N PF16028.5 gi|242398468|ref|YP_002993892.1| - 1 8.9 5.0 3.4 7.3 1.9 2.0 2 0 0 2 2 2 0 Solute carrier family 3 member 2 N-terminus ThiS PF02597.20 gi|242398470|ref|YP_002993894.1| - 1.4e-06 28.9 0.0 1.5e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|242398470|ref|YP_002993894.1| - 0.014 15.2 0.0 0.029 14.2 0.0 1.5 2 0 0 2 2 2 0 Mut7-C ubiquitin Glycos_transf_2 PF00535.26 gi|242398471|ref|YP_002993895.1| - 3.6e-40 137.6 0.0 4.3e-40 137.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|242398471|ref|YP_002993895.1| - 1e-12 48.5 0.0 1.2e-12 48.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|242398471|ref|YP_002993895.1| - 3.4e-10 39.9 0.0 6.1e-10 39.0 0.0 1.4 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|242398471|ref|YP_002993895.1| - 5.8e-06 26.7 0.0 1e-05 25.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|242398471|ref|YP_002993895.1| - 0.0045 16.5 0.0 0.0065 16.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 DUF374 PF04028.13 gi|242398471|ref|YP_002993895.1| - 0.03 13.9 0.0 0.069 12.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF374) Glyco_tranf_2_5 PF13712.6 gi|242398471|ref|YP_002993895.1| - 0.046 13.4 0.0 0.065 12.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family Peptidase_M54 PF07998.11 gi|242398472|ref|YP_002993896.1| - 3.8e-50 170.6 1.1 9.1e-49 166.1 1.1 2.0 1 1 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|242398472|ref|YP_002993896.1| - 0.0006 19.7 0.0 0.00084 19.2 0.0 1.4 1 1 0 1 1 1 1 Matrixin Metallopep PF12044.8 gi|242398472|ref|YP_002993896.1| - 0.0068 15.1 0.9 0.012 14.2 0.9 1.3 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_3 PF13582.6 gi|242398472|ref|YP_002993896.1| - 0.011 16.3 0.7 0.035 14.6 0.1 2.1 3 0 0 3 3 3 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|242398472|ref|YP_002993896.1| - 0.011 15.9 0.0 0.036 14.2 0.0 1.8 2 0 0 2 2 2 0 Metallo-peptidase family M12 Peptidase_M66 PF10462.9 gi|242398472|ref|YP_002993896.1| - 0.018 14.0 0.1 0.027 13.4 0.1 1.2 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_4 PF13583.6 gi|242398472|ref|YP_002993896.1| - 0.02 14.5 0.1 0.088 12.4 0.0 1.9 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|242398472|ref|YP_002993896.1| - 0.045 13.6 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|242398472|ref|YP_002993896.1| - 0.048 12.9 0.0 0.085 12.1 0.0 1.3 1 0 0 1 1 1 0 Met-zincin Prenyltrans PF00432.21 gi|242398473|ref|YP_002993897.1| - 3.6e-07 29.8 0.7 0.27 11.0 0.0 4.8 5 0 0 5 5 5 3 Prenyltransferase and squalene oxidase repeat Ribophorin_II PF05817.14 gi|242398473|ref|YP_002993897.1| - 0.015 13.9 0.0 0.27 9.7 0.0 2.1 1 1 1 2 2 2 0 Oligosaccharyltransferase subunit Ribophorin II CRCB PF02537.15 gi|242398474|ref|YP_002993898.1| - 8.7e-24 83.7 7.8 1.1e-23 83.3 7.8 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) Phage_holin_3_3 PF16083.5 gi|242398474|ref|YP_002993898.1| - 0.004 17.2 3.1 0.014 15.4 3.1 2.0 1 1 0 1 1 1 1 LydA holin phage, holin superfamily III DUF190 PF02641.15 gi|242398475|ref|YP_002993899.1| - 1.6e-38 130.9 0.2 3.8e-38 129.7 0.1 1.6 1 1 1 2 2 2 2 Uncharacterized ACR, COG1993 DUF835 PF05763.12 gi|242398476|ref|YP_002993900.1| - 1.9e-32 111.8 0.3 2.5e-32 111.5 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DFP PF04127.15 gi|242398477|ref|YP_002993901.1| - 4e-58 196.3 3.4 2.8e-56 190.3 0.8 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|242398477|ref|YP_002993901.1| - 2.5e-40 137.8 5.0 4e-39 133.9 2.5 2.2 2 0 0 2 2 2 1 Flavoprotein Radical_SAM PF04055.21 gi|242398477|ref|YP_002993901.1| - 0.0014 19.1 1.2 0.33 11.3 0.0 3.3 1 1 1 2 2 2 1 Radical SAM superfamily MutL_C PF08676.11 gi|242398477|ref|YP_002993901.1| - 0.053 13.3 0.1 8.1 6.2 0.0 3.2 3 0 0 3 3 3 0 MutL C terminal dimerisation domain DUF5099 PF17025.5 gi|242398477|ref|YP_002993901.1| - 0.069 13.6 0.3 3 8.3 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF5099) PTS_IIB PF02302.17 gi|242398477|ref|YP_002993901.1| - 0.069 13.8 6.5 0.43 11.3 0.2 3.6 4 0 0 4 4 4 0 PTS system, Lactose/Cellobiose specific IIB subunit SBP_bac_3 PF00497.20 gi|242398477|ref|YP_002993901.1| - 0.12 11.7 0.3 19 4.6 0.0 2.2 1 1 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 Usp PF00582.26 gi|242398477|ref|YP_002993901.1| - 0.22 12.0 4.0 0.5 10.9 0.4 2.6 2 1 0 2 2 2 0 Universal stress protein family MS_channel PF00924.18 gi|242398478|ref|YP_002993902.1| - 2e-50 171.2 0.2 2e-50 171.2 0.2 1.3 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|242398478|ref|YP_002993902.1| - 0.00029 20.8 5.3 0.00029 20.8 5.3 2.5 2 1 1 3 3 3 1 Conserved TM helix TssN PF17555.2 gi|242398478|ref|YP_002993902.1| - 0.36 10.2 3.6 0.53 9.6 3.6 1.2 1 0 0 1 1 1 0 Type VI secretion system, TssN Bacillus_PapR PF05968.11 gi|242398478|ref|YP_002993902.1| - 0.42 10.5 4.9 4 7.4 0.0 3.2 2 1 1 3 3 3 0 Bacillus PapR protein IF-2B PF01008.17 gi|242398479|ref|YP_002993903.1| - 6.8e-52 176.4 0.0 2.2e-51 174.8 0.0 1.8 1 1 0 1 1 1 1 Initiation factor 2 subunit family Regulator_TrmB PF11495.8 gi|242398479|ref|YP_002993903.1| - 0.018 14.3 0.0 0.11 11.6 0.0 1.9 1 1 1 2 2 2 0 Archaeal transcriptional regulator TrmB TBPIP_N PF15517.6 gi|242398480|ref|YP_002993904.1| - 1.1e-36 124.9 0.7 1.8e-36 124.2 0.7 1.3 1 0 0 1 1 1 1 TBP-interacting protein N-terminus zf_UBZ PF18439.1 gi|242398480|ref|YP_002993904.1| - 0.00038 20.0 0.2 0.00038 20.0 0.2 1.8 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf_C2H2_13 PF18508.1 gi|242398480|ref|YP_002993904.1| - 0.001 18.6 0.0 0.0029 17.2 0.0 1.7 1 0 0 1 1 1 1 Zinc finger domain GSAP-16 PF14959.6 gi|242398480|ref|YP_002993904.1| - 0.07 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 gamma-Secretase-activating protein C-term tRNA-Thr_ED PF08915.11 gi|242398481|ref|YP_002993905.1| - 3e-55 186.0 0.4 3e-55 186.0 0.4 2.1 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|242398481|ref|YP_002993905.1| - 1.1e-24 86.4 4.8 2.8e-24 85.1 3.4 2.3 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|242398481|ref|YP_002993905.1| - 7.9e-19 68.3 0.2 1.8e-18 67.2 0.2 1.6 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon2 PF12745.7 gi|242398481|ref|YP_002993905.1| - 0.015 14.8 0.2 0.015 14.8 0.2 1.8 2 0 0 2 2 2 0 Anticodon binding domain of tRNAs Sigma54_DBD PF04552.13 gi|242398481|ref|YP_002993905.1| - 0.1 12.3 0.3 0.37 10.5 0.0 2.0 2 0 0 2 2 2 0 Sigma-54, DNA binding domain TIM PF00121.18 gi|242398481|ref|YP_002993905.1| - 0.6 9.4 2.8 1 8.7 0.3 2.1 2 0 0 2 2 2 0 Triosephosphate isomerase Ku_C PF03730.14 gi|242398481|ref|YP_002993905.1| - 0.66 10.7 5.4 5.9 7.7 0.0 3.4 2 1 0 2 2 2 0 Ku70/Ku80 C-terminal arm ECR1_N PF14382.6 gi|242398483|ref|YP_002993907.1| - 2.8e-09 36.6 0.0 5.8e-09 35.6 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|242398483|ref|YP_002993907.1| - 1.7e-08 35.0 1.2 3.1e-06 27.7 0.2 2.4 1 1 1 2 2 2 2 Exosome component EXOSC1/CSL4 S1 PF00575.23 gi|242398483|ref|YP_002993907.1| - 1.3e-05 25.5 0.3 0.12 12.8 0.1 2.4 2 0 0 2 2 2 2 S1 RNA binding domain Prok-RING_1 PF14446.6 gi|242398483|ref|YP_002993907.1| - 0.0077 16.1 0.1 0.015 15.2 0.1 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 PCB_OB PF17092.5 gi|242398483|ref|YP_002993907.1| - 0.04 14.7 0.1 0.062 14.1 0.1 1.3 1 0 0 1 1 1 0 Penicillin-binding protein OB-like domain Auto_anti-p27 PF06677.12 gi|242398483|ref|YP_002993907.1| - 0.049 13.8 1.6 0.081 13.1 1.6 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|242398483|ref|YP_002993907.1| - 0.054 13.5 0.3 0.089 12.8 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|242398483|ref|YP_002993907.1| - 0.058 13.4 0.2 0.058 13.4 0.2 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|242398483|ref|YP_002993907.1| - 0.2 11.7 1.3 0.41 10.7 1.3 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1610 PF07754.11 gi|242398483|ref|YP_002993907.1| - 0.23 11.4 1.6 0.6 10.1 1.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) DUF2067 PF09840.9 gi|242398484|ref|YP_002993908.1| - 8.8e-43 146.0 4.9 1e-42 145.9 4.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) DUF2102 PF09875.9 gi|242398484|ref|YP_002993908.1| - 0.069 12.9 0.3 0.16 11.7 0.3 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2102) P2_N PF18628.1 gi|242398484|ref|YP_002993908.1| - 0.076 12.8 0.3 0.25 11.1 0.1 1.8 2 0 0 2 2 2 0 Viral coat protein P2 N-terminal domain KH_1 PF00013.29 gi|242398484|ref|YP_002993908.1| - 0.095 12.5 0.1 5.3 6.9 0.1 2.4 2 0 0 2 2 2 0 KH domain YusW PF14039.6 gi|242398484|ref|YP_002993908.1| - 0.11 13.0 4.5 0.31 11.6 0.1 3.1 2 2 1 3 3 3 0 YusW-like protein DUF3970 PF13113.6 gi|242398484|ref|YP_002993908.1| - 0.29 11.4 0.1 0.29 11.4 0.1 2.5 4 0 0 4 4 4 0 Protein of unknown function (DUF3970) RNA_pol_L_2 PF13656.6 gi|242398485|ref|YP_002993909.1| - 2.5e-20 72.0 0.1 3e-20 71.8 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|242398485|ref|YP_002993909.1| - 3.7e-10 39.1 0.0 6.1e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Cadherin_pro PF08758.11 gi|242398485|ref|YP_002993909.1| - 0.018 15.2 0.0 0.027 14.6 0.0 1.4 1 1 0 1 1 1 0 Cadherin prodomain like Ribonucleas_3_2 PF11469.8 gi|242398486|ref|YP_002993910.1| - 9e-46 155.2 0.0 1e-45 155.0 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease III NdhM PF10664.9 gi|242398486|ref|YP_002993910.1| - 0.17 12.2 0.0 0.3 11.4 0.0 1.3 1 0 0 1 1 1 0 Cyanobacterial and plastid NDH-1 subunit M AP_endonuc_2 PF01261.24 gi|242398487|ref|YP_002993911.1| - 9.9e-18 64.3 0.0 1.2e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel MukF_C PF17193.4 gi|242398487|ref|YP_002993911.1| - 0.0084 16.3 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 MukF C-terminal domain Uricase PF01014.18 gi|242398487|ref|YP_002993911.1| - 0.046 14.0 0.0 0.071 13.4 0.0 1.4 1 0 0 1 1 1 0 Uricase CoA_binding_2 PF13380.6 gi|242398487|ref|YP_002993911.1| - 0.09 13.3 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 CoA binding domain Hjc PF01870.18 gi|242398487|ref|YP_002993911.1| - 0.13 12.2 0.1 0.47 10.5 0.1 1.9 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Peptidase_S49 PF01343.18 gi|242398488|ref|YP_002993912.1| - 2.5e-39 134.7 0.4 4.1e-39 134.0 0.1 1.5 2 0 0 2 2 2 1 Peptidase family S49 CLP_protease PF00574.23 gi|242398488|ref|YP_002993912.1| - 4e-09 36.6 0.0 7.3e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|242398488|ref|YP_002993912.1| - 3e-06 26.5 0.0 3.9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ECH_1 PF00378.20 gi|242398488|ref|YP_002993912.1| - 0.0017 17.8 0.6 0.016 14.5 0.3 2.2 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase Imm7 PF15585.6 gi|242398488|ref|YP_002993912.1| - 0.018 15.3 0.3 0.11 12.7 0.0 2.3 2 1 1 3 3 3 0 Immunity protein 7 DUF4482 PF14818.6 gi|242398488|ref|YP_002993912.1| - 0.1 13.5 0.2 0.17 12.7 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4482) DUF3896 PF13035.6 gi|242398488|ref|YP_002993912.1| - 0.11 12.7 2.2 0.15 12.2 0.2 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3896) L6_membrane PF05805.12 gi|242398488|ref|YP_002993912.1| - 0.15 11.6 0.1 0.31 10.6 0.1 1.5 1 0 0 1 1 1 0 L6 membrane protein DUF5312 PF17239.2 gi|242398488|ref|YP_002993912.1| - 0.17 10.2 0.4 0.24 9.7 0.4 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5312) Ph1570 PF09638.10 gi|242398489|ref|YP_002993913.1| - 8.1e-63 210.9 3.3 9.4e-63 210.7 3.3 1.0 1 0 0 1 1 1 1 Ph1570 protein AI-2E_transport PF01594.16 gi|242398490|ref|YP_002993914.1| - 2.7e-38 132.0 30.9 3.1e-38 131.7 30.9 1.0 1 0 0 1 1 1 1 AI-2E family transporter DUF4870 PF09685.10 gi|242398491|ref|YP_002993915.1| - 0.00013 22.0 3.8 0.00015 21.8 3.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) DUF4112 PF13430.6 gi|242398491|ref|YP_002993915.1| - 0.86 9.9 3.7 0.68 10.2 0.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4112) FeoA PF04023.14 gi|242398492|ref|YP_002993916.1| - 1.4e-20 73.3 2.2 1.5e-20 73.2 2.2 1.0 1 0 0 1 1 1 1 FeoA domain DUF2931 PF11153.8 gi|242398492|ref|YP_002993916.1| - 0.16 11.7 0.0 0.17 11.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2931) FeoB_N PF02421.18 gi|242398493|ref|YP_002993917.1| - 3.8e-63 211.7 3.3 1.4e-62 209.8 1.1 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B Gate PF07670.14 gi|242398493|ref|YP_002993917.1| - 8.2e-42 142.0 16.1 1.7e-26 92.7 4.3 2.8 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.12 gi|242398493|ref|YP_002993917.1| - 2.1e-18 65.7 0.4 9.3e-18 63.7 0.4 2.3 1 0 0 1 1 1 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 gi|242398493|ref|YP_002993917.1| - 2.4e-18 66.3 1.1 3.8e-18 65.6 0.2 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|242398493|ref|YP_002993917.1| - 3.7e-16 59.5 0.5 6.9e-16 58.6 0.5 1.5 1 0 0 1 1 1 1 FeoB cytosolic helical domain RsgA_GTPase PF03193.16 gi|242398493|ref|YP_002993917.1| - 2.2e-07 31.0 0.3 0.00091 19.2 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|242398493|ref|YP_002993917.1| - 3.9e-06 26.4 0.5 1.2e-05 24.8 0.1 1.9 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit PduV-EutP PF10662.9 gi|242398493|ref|YP_002993917.1| - 0.00031 20.5 0.5 0.001 18.8 0.2 2.1 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|242398493|ref|YP_002993917.1| - 0.0011 18.5 0.6 0.011 15.3 0.2 2.4 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|242398493|ref|YP_002993917.1| - 0.0037 16.9 0.0 0.011 15.3 0.0 1.8 1 1 0 1 1 1 1 Ras family ATP_bind_1 PF03029.17 gi|242398493|ref|YP_002993917.1| - 0.01 15.6 0.1 0.092 12.5 0.1 2.4 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein MMR_HSR1_Xtn PF16897.5 gi|242398493|ref|YP_002993917.1| - 0.069 13.2 0.9 0.85 9.7 0.1 2.5 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain FeoC PF09012.10 gi|242398494|ref|YP_002993918.1| - 9e-05 22.5 0.1 0.0001 22.3 0.1 1.2 1 0 0 1 1 1 1 FeoC like transcriptional regulator TrmB PF01978.19 gi|242398494|ref|YP_002993918.1| - 0.00011 22.0 0.1 0.00014 21.7 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|242398494|ref|YP_002993918.1| - 0.00044 20.0 0.1 0.00055 19.7 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_11 PF08279.12 gi|242398494|ref|YP_002993918.1| - 0.0009 19.1 0.3 0.0011 18.8 0.3 1.1 1 0 0 1 1 1 1 HTH domain DUF2250 PF10007.9 gi|242398494|ref|YP_002993918.1| - 0.0011 19.1 0.1 0.0014 18.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.6 gi|242398494|ref|YP_002993918.1| - 0.0011 18.5 0.3 0.0016 18.0 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|242398494|ref|YP_002993918.1| - 0.0015 18.4 0.0 0.0018 18.1 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|242398494|ref|YP_002993918.1| - 0.0019 18.0 0.2 0.003 17.4 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r3 PF04539.16 gi|242398494|ref|YP_002993918.1| - 0.0028 17.7 0.5 0.0048 17.0 0.5 1.3 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_IclR PF09339.10 gi|242398494|ref|YP_002993918.1| - 0.0048 16.7 0.0 0.0058 16.4 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 gi|242398494|ref|YP_002993918.1| - 0.0072 15.8 0.3 0.012 15.1 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|242398494|ref|YP_002993918.1| - 0.0094 16.0 0.0 0.012 15.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Exonuc_VII_S PF02609.16 gi|242398494|ref|YP_002993918.1| - 0.011 15.8 1.5 0.063 13.4 0.6 2.1 1 1 1 2 2 2 0 Exonuclease VII small subunit Sigma70_r4_2 PF08281.12 gi|242398494|ref|YP_002993918.1| - 0.012 15.3 0.1 0.019 14.6 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_36 PF13730.6 gi|242398494|ref|YP_002993918.1| - 0.015 15.2 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain PheRS_DBD1 PF18552.1 gi|242398494|ref|YP_002993918.1| - 0.021 14.6 0.1 0.025 14.3 0.1 1.1 1 0 0 1 1 1 0 PheRS DNA binding domain 1 Rrf2 PF02082.20 gi|242398494|ref|YP_002993918.1| - 0.022 15.1 0.0 0.027 14.8 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator FhuF_C PF11575.8 gi|242398494|ref|YP_002993918.1| - 0.033 14.1 0.1 0.073 13.0 0.1 1.6 1 0 0 1 1 1 0 FhuF 2Fe-2S C-terminal domain HTH_28 PF13518.6 gi|242398494|ref|YP_002993918.1| - 0.037 14.2 0.0 0.047 13.8 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|242398494|ref|YP_002993918.1| - 0.043 13.7 0.1 0.059 13.3 0.1 1.2 1 0 0 1 1 1 0 MarR family RPA_C PF08784.11 gi|242398494|ref|YP_002993918.1| - 0.043 14.5 0.1 0.063 13.9 0.1 1.2 1 0 0 1 1 1 0 Replication protein A C terminal B-block_TFIIIC PF04182.12 gi|242398494|ref|YP_002993918.1| - 0.045 13.9 0.0 0.052 13.7 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_9 PF08221.11 gi|242398494|ref|YP_002993918.1| - 0.053 13.6 0.0 0.074 13.2 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|242398494|ref|YP_002993918.1| - 0.072 13.1 0.1 0.092 12.7 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RepL PF05732.11 gi|242398494|ref|YP_002993918.1| - 0.073 12.5 0.0 0.073 12.5 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) RNA_pol_Rpc34 PF05158.12 gi|242398494|ref|YP_002993918.1| - 0.074 12.4 0.1 0.089 12.2 0.1 1.3 1 1 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_Tnp_ISL3 PF13542.6 gi|242398494|ref|YP_002993918.1| - 0.094 12.1 0.0 0.18 11.2 0.0 1.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DUF4211 PF13926.6 gi|242398494|ref|YP_002993918.1| - 0.17 11.9 0.1 0.17 11.9 0.1 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4211) NTP_transferase PF00483.23 gi|242398495|ref|YP_002993919.1| - 6.7e-47 160.2 0.0 8.8e-47 159.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|242398495|ref|YP_002993919.1| - 2.2e-12 46.2 4.8 1.5e-05 24.5 0.2 2.7 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|242398495|ref|YP_002993919.1| - 5e-10 40.0 0.0 7.8e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|242398495|ref|YP_002993919.1| - 0.015 15.1 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|242398495|ref|YP_002993919.1| - 2 8.2 7.2 14 5.5 2.6 3.3 2 2 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase DisA_N PF02457.16 gi|242398496|ref|YP_002993920.1| - 5.4e-23 80.8 0.0 8.8e-23 80.1 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding UIM PF02809.20 gi|242398496|ref|YP_002993920.1| - 0.23 11.4 0.6 0.99 9.5 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin interaction motif Flavoprotein PF02441.19 gi|242398497|ref|YP_002993921.1| - 5.2e-29 101.0 0.1 6.6e-29 100.7 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein Lipoprotein_18 PF06804.11 gi|242398497|ref|YP_002993921.1| - 0.038 13.0 0.0 0.055 12.5 0.0 1.1 1 0 0 1 1 1 0 NlpB/DapX lipoprotein HTH_24 PF13412.6 gi|242398498|ref|YP_002993922.1| - 3.4e-15 55.3 1.2 3.4e-15 55.3 1.2 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|242398498|ref|YP_002993922.1| - 8.2e-12 44.8 0.8 1.4e-11 44.0 0.8 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|242398498|ref|YP_002993922.1| - 1.2e-06 28.5 0.1 1.9e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain NapD PF03927.13 gi|242398498|ref|YP_002993922.1| - 1.3e-05 25.1 0.0 2.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 NapD protein HTH_5 PF01022.20 gi|242398498|ref|YP_002993922.1| - 1.4e-05 24.8 0.1 3.1e-05 23.7 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|242398498|ref|YP_002993922.1| - 4.8e-05 23.1 0.0 9.1e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|242398498|ref|YP_002993922.1| - 0.00016 22.1 0.1 0.00031 21.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|242398498|ref|YP_002993922.1| - 0.0005 19.9 0.0 0.00083 19.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|242398498|ref|YP_002993922.1| - 0.00061 19.6 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|242398498|ref|YP_002993922.1| - 0.00068 19.1 0.4 0.0012 18.3 0.4 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|242398498|ref|YP_002993922.1| - 0.00089 19.2 0.5 0.0016 18.3 0.5 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|242398498|ref|YP_002993922.1| - 0.0017 18.2 0.4 0.0032 17.4 0.4 1.4 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 gi|242398498|ref|YP_002993922.1| - 0.0031 17.9 0.0 0.0057 17.0 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_23 PF13384.6 gi|242398498|ref|YP_002993922.1| - 0.0094 15.7 0.1 0.026 14.3 0.1 1.8 2 0 0 2 2 1 1 Homeodomain-like domain HTH_38 PF13936.6 gi|242398498|ref|YP_002993922.1| - 0.013 15.3 0.7 0.074 12.8 0.1 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|242398498|ref|YP_002993922.1| - 0.022 14.5 0.4 0.038 13.7 0.4 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RuvB_C PF05491.13 gi|242398498|ref|YP_002993922.1| - 0.023 14.5 0.9 0.092 12.6 0.2 2.3 2 1 1 3 3 3 0 RuvB C-terminal winged helix domain DAHP_snth_FXD PF18152.1 gi|242398498|ref|YP_002993922.1| - 0.053 13.4 0.1 0.36 10.7 0.1 2.1 2 0 0 2 2 2 0 DAHP synthase ferredoxin-like domain DUF742 PF05331.11 gi|242398498|ref|YP_002993922.1| - 0.08 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF742) AMP-binding_C PF13193.6 gi|242398498|ref|YP_002993922.1| - 0.12 13.4 0.1 28 5.8 0.0 2.9 1 1 3 4 4 4 0 AMP-binding enzyme C-terminal domain Cullin_Nedd8 PF10557.9 gi|242398498|ref|YP_002993922.1| - 2.3 8.3 4.7 0.88 9.7 0.3 2.4 3 0 0 3 3 3 0 Cullin protein neddylation domain CYTH PF01928.21 gi|242398499|ref|YP_002993923.1| - 5.3e-26 91.6 3.3 6.1e-26 91.4 3.3 1.0 1 0 0 1 1 1 1 CYTH domain Glyoxalase_5 PF14696.6 gi|242398499|ref|YP_002993923.1| - 0.11 12.6 0.1 0.2 11.8 0.1 1.3 1 0 0 1 1 1 0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal MMR_HSR1_C PF08438.10 gi|242398500|ref|YP_002993924.1| - 4.1e-35 120.7 0.0 7.4e-35 119.9 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|242398500|ref|YP_002993924.1| - 4.2e-20 71.9 0.0 4.2e-19 68.7 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|242398500|ref|YP_002993924.1| - 6e-13 48.6 0.0 1.6e-12 47.3 0.0 1.8 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|242398500|ref|YP_002993924.1| - 4.3e-10 39.3 0.1 6.5e-07 29.0 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|242398500|ref|YP_002993924.1| - 0.015 15.3 0.0 0.034 14.1 0.0 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain PrpR_N PF06506.11 gi|242398500|ref|YP_002993924.1| - 0.016 14.8 0.1 0.088 12.4 0.0 2.1 2 0 0 2 2 2 0 Propionate catabolism activator RsgA_GTPase PF03193.16 gi|242398500|ref|YP_002993924.1| - 0.019 14.9 0.1 0.084 12.8 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase YchF-GTPase_C PF06071.13 gi|242398500|ref|YP_002993924.1| - 0.075 13.2 0.0 1.3 9.3 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF933) Peptidase_M29 PF02073.15 gi|242398501|ref|YP_002993925.1| - 1.3e-11 44.0 0.6 9.6e-11 41.1 0.2 2.4 1 1 0 2 2 2 1 Thermophilic metalloprotease (M29) LSM PF01423.22 gi|242398502|ref|YP_002993926.1| - 4.1e-20 71.2 0.1 4.5e-20 71.1 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|242398502|ref|YP_002993926.1| - 0.014 15.5 0.0 0.015 15.5 0.0 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain NMT1_2 PF13379.6 gi|242398504|ref|YP_002993928.1| - 1.3e-06 28.3 0.0 3e-05 23.9 0.0 2.0 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 gi|242398504|ref|YP_002993928.1| - 0.0016 17.9 0.0 0.095 12.1 0.0 2.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF5603 PF18231.1 gi|242398504|ref|YP_002993928.1| - 0.0073 16.6 0.4 0.47 10.8 0.1 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF5603) NMT1 PF09084.11 gi|242398504|ref|YP_002993928.1| - 0.037 14.0 0.0 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 NMT1/THI5 like GntR PF00392.21 gi|242398504|ref|YP_002993928.1| - 0.13 11.9 0.0 0.36 10.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF3834 PF12916.7 gi|242398504|ref|YP_002993928.1| - 0.18 11.1 0.1 1.2 8.4 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3834) OpuAC PF04069.12 gi|242398504|ref|YP_002993928.1| - 0.21 11.1 0.0 0.83 9.2 0.0 1.9 2 1 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system MatE PF01554.18 gi|242398505|ref|YP_002993929.1| - 1.3e-71 239.4 25.8 4.3e-38 130.5 10.7 3.1 4 0 0 4 4 4 2 MatE MurJ PF03023.14 gi|242398505|ref|YP_002993929.1| - 1.8e-09 36.8 23.2 2.4e-07 29.7 11.3 3.1 2 2 1 3 3 3 2 Lipid II flippase MurJ Polysacc_synt_C PF14667.6 gi|242398505|ref|YP_002993929.1| - 2.4e-06 27.7 7.8 2.4e-06 27.7 7.8 4.2 3 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|242398505|ref|YP_002993929.1| - 9.9e-06 25.0 9.9 1.7e-05 24.2 2.6 3.0 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein VirB3 PF05101.13 gi|242398505|ref|YP_002993929.1| - 0.018 15.2 0.6 0.018 15.2 0.6 5.1 4 2 0 5 5 5 0 Type IV secretory pathway, VirB3-like protein TRM PF02005.16 gi|242398506|ref|YP_002993930.1| - 8.7e-117 390.5 0.0 1.1e-116 390.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|242398506|ref|YP_002993930.1| - 0.023 14.5 0.0 0.046 13.5 0.0 1.5 1 1 0 1 1 1 0 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|242398506|ref|YP_002993930.1| - 0.075 12.7 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ribosomal_L35Ae PF01247.18 gi|242398507|ref|YP_002993931.1| - 2.9e-19 69.0 0.2 4.3e-19 68.5 0.2 1.3 1 1 0 1 1 1 1 Ribosomal protein L35Ae RimM PF01782.18 gi|242398507|ref|YP_002993931.1| - 2.9e-08 33.8 0.1 0.00032 20.9 0.1 2.1 2 0 0 2 2 2 2 RimM N-terminal domain Flavin_Reduct PF01613.18 gi|242398508|ref|YP_002993932.1| - 2.5e-20 73.1 0.0 3.2e-20 72.8 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Ribonuc_L-PSP PF01042.21 gi|242398509|ref|YP_002993933.1| - 0.00053 20.0 0.2 0.00056 19.9 0.2 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF257 PF03192.13 gi|242398510|ref|YP_002993934.1| - 2.2e-49 168.0 1.2 2.5e-49 167.9 1.2 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 HSP20 PF00011.21 gi|242398511|ref|YP_002993935.1| - 1.2e-20 73.5 0.8 1.8e-20 73.0 0.8 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|242398511|ref|YP_002993935.1| - 2.2e-13 49.5 0.1 3.9e-13 48.8 0.1 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|242398511|ref|YP_002993935.1| - 0.0069 17.4 0.0 0.01 16.8 0.0 1.2 1 0 0 1 1 1 1 CS domain PIH1_CS PF18201.1 gi|242398511|ref|YP_002993935.1| - 0.028 14.8 0.1 0.049 14.0 0.1 1.3 1 0 0 1 1 1 0 PIH1 CS-like domain GvpH PF05455.11 gi|242398511|ref|YP_002993935.1| - 0.052 13.6 0.0 0.51 10.4 0.1 2.0 2 0 0 2 2 2 0 GvpH AAA PF00004.29 gi|242398512|ref|YP_002993936.1| - 1.4e-102 339.3 0.0 6.6e-51 172.2 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|242398512|ref|YP_002993936.1| - 3.5e-36 123.2 0.5 7.3e-35 119.0 1.6 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|242398512|ref|YP_002993936.1| - 6.8e-34 115.4 3.9 1.4e-17 63.2 0.2 3.0 2 0 0 2 2 2 2 AAA+ lid domain AAA_2 PF07724.14 gi|242398512|ref|YP_002993936.1| - 1.8e-16 60.7 0.0 1.6e-08 34.9 0.0 3.3 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|242398512|ref|YP_002993936.1| - 3.7e-16 59.3 0.2 3.1e-07 30.3 0.0 3.5 4 0 0 4 4 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|242398512|ref|YP_002993936.1| - 1.5e-15 58.0 2.0 1.9e-06 28.4 0.0 4.2 3 1 1 4 4 4 2 AAA ATPase domain CDC48_2 PF02933.17 gi|242398512|ref|YP_002993936.1| - 1.3e-13 50.5 0.7 4.8e-13 48.7 0.3 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|242398512|ref|YP_002993936.1| - 6.3e-12 45.9 6.2 0.001 19.3 0.0 5.3 3 3 1 4 4 4 2 AAA domain AAA_14 PF13173.6 gi|242398512|ref|YP_002993936.1| - 6.6e-12 45.6 0.0 1.8e-05 24.7 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|242398512|ref|YP_002993936.1| - 1.6e-11 44.4 2.6 0.00042 20.3 0.1 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|242398512|ref|YP_002993936.1| - 4.2e-11 42.6 0.1 0.00029 20.1 0.0 3.2 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|242398512|ref|YP_002993936.1| - 9.8e-11 42.0 0.0 0.00041 20.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|242398512|ref|YP_002993936.1| - 3.5e-09 36.5 0.6 0.00049 20.0 0.0 3.1 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|242398512|ref|YP_002993936.1| - 2.5e-08 34.5 0.0 0.014 15.9 0.0 3.1 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|242398512|ref|YP_002993936.1| - 4.8e-08 32.9 0.1 0.0095 15.7 0.1 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|242398512|ref|YP_002993936.1| - 6.2e-08 33.0 0.0 0.018 15.4 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.26 gi|242398512|ref|YP_002993936.1| - 9.7e-08 31.9 0.1 0.038 13.7 0.0 3.7 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|242398512|ref|YP_002993936.1| - 1e-07 31.9 0.0 0.0097 15.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain Bac_DnaA PF00308.18 gi|242398512|ref|YP_002993936.1| - 1.2e-07 31.8 0.0 0.0047 16.8 0.0 3.4 3 1 0 3 3 3 2 Bacterial dnaA protein Mg_chelatase PF01078.21 gi|242398512|ref|YP_002993936.1| - 5.2e-07 29.2 0.6 0.032 13.6 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|242398512|ref|YP_002993936.1| - 1.1e-06 29.0 0.0 0.035 14.4 0.0 3.0 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|242398512|ref|YP_002993936.1| - 1.7e-06 27.4 0.0 0.028 13.6 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.12 gi|242398512|ref|YP_002993936.1| - 2.1e-06 27.7 0.1 1 9.3 0.0 4.3 4 0 0 4 4 4 2 NACHT domain AAA_7 PF12775.7 gi|242398512|ref|YP_002993936.1| - 5.7e-06 26.0 0.0 0.095 12.2 0.0 2.6 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_25 PF13481.6 gi|242398512|ref|YP_002993936.1| - 6.3e-06 25.9 5.0 0.14 11.8 1.6 4.4 3 1 0 3 3 3 2 AAA domain ABC_tran PF00005.27 gi|242398512|ref|YP_002993936.1| - 8.4e-06 26.3 0.0 0.18 12.3 0.0 2.9 2 1 0 2 2 2 2 ABC transporter ATPase_2 PF01637.18 gi|242398512|ref|YP_002993936.1| - 1.5e-05 25.0 4.4 0.012 15.5 0.0 3.9 3 1 1 4 4 4 2 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|242398512|ref|YP_002993936.1| - 1.7e-05 24.8 0.0 0.14 12.2 0.0 2.7 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|242398512|ref|YP_002993936.1| - 3.6e-05 23.3 1.3 0.36 10.3 0.0 3.2 3 0 0 3 3 3 2 PhoH-like protein AAA_3 PF07726.11 gi|242398512|ref|YP_002993936.1| - 6.4e-05 22.8 0.0 0.56 10.1 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|242398512|ref|YP_002993936.1| - 7.1e-05 22.3 5.7 0.21 10.9 0.0 4.2 3 2 1 5 5 5 2 KaiC DUF2075 PF09848.9 gi|242398512|ref|YP_002993936.1| - 7.9e-05 22.0 0.0 0.097 11.9 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.17 gi|242398512|ref|YP_002993936.1| - 8.6e-05 21.8 0.1 0.4 9.7 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 gi|242398512|ref|YP_002993936.1| - 0.00013 21.3 2.8 0.3 10.3 0.0 3.4 4 0 0 4 4 3 2 Zeta toxin AAA_30 PF13604.6 gi|242398512|ref|YP_002993936.1| - 0.00036 20.3 0.4 1.2 8.9 0.0 3.1 2 1 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|242398512|ref|YP_002993936.1| - 0.00041 20.2 0.3 0.79 9.5 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_17 PF13207.6 gi|242398512|ref|YP_002993936.1| - 0.00046 20.6 0.4 3.2 8.2 0.0 3.9 3 1 0 3 3 3 1 AAA domain NB-ARC PF00931.22 gi|242398512|ref|YP_002993936.1| - 0.00065 19.0 0.0 0.75 8.9 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain AAA_19 PF13245.6 gi|242398512|ref|YP_002993936.1| - 0.0028 18.0 2.8 3.2 8.1 0.1 3.3 2 2 2 4 4 3 1 AAA domain NTPase_1 PF03266.15 gi|242398512|ref|YP_002993936.1| - 0.0045 16.9 3.5 8.3 6.3 0.0 4.7 3 2 2 5 5 4 0 NTPase T2SSE PF00437.20 gi|242398512|ref|YP_002993936.1| - 0.012 14.7 0.0 5.1 6.1 0.0 2.6 2 1 0 2 2 2 0 Type II/IV secretion system protein Sigma54_activ_2 PF14532.6 gi|242398512|ref|YP_002993936.1| - 0.017 15.2 0.0 6.7 6.8 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain Cytidylate_kin PF02224.18 gi|242398512|ref|YP_002993936.1| - 0.021 14.6 0.7 5.9 6.6 0.0 3.1 3 0 0 3 3 3 0 Cytidylate kinase Zot PF05707.12 gi|242398512|ref|YP_002993936.1| - 0.022 14.4 0.0 1.5 8.4 0.0 3.0 2 1 1 3 3 3 0 Zonular occludens toxin (Zot) ResIII PF04851.15 gi|242398512|ref|YP_002993936.1| - 0.024 14.7 0.0 8.6 6.3 0.0 2.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF1905 PF08922.11 gi|242398512|ref|YP_002993936.1| - 0.029 14.4 0.3 9.3 6.4 0.0 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) AFG1_ATPase PF03969.16 gi|242398512|ref|YP_002993936.1| - 0.041 12.8 0.0 7.2 5.4 0.0 2.7 3 0 0 3 3 3 0 AFG1-like ATPase ATP-synt_ab PF00006.25 gi|242398512|ref|YP_002993936.1| - 0.044 13.4 0.0 3.4 7.3 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain IPT PF01745.16 gi|242398512|ref|YP_002993936.1| - 0.065 12.6 2.4 15 4.9 0.0 3.6 4 0 0 4 4 3 0 Isopentenyl transferase Viral_helicase1 PF01443.18 gi|242398512|ref|YP_002993936.1| - 0.065 13.0 0.0 2.2 7.9 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase SKI PF01202.22 gi|242398512|ref|YP_002993936.1| - 0.091 12.9 1.8 13 5.8 0.0 3.8 4 0 0 4 4 3 0 Shikimate kinase AAA_29 PF13555.6 gi|242398512|ref|YP_002993936.1| - 0.11 12.3 0.0 24 4.8 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain DAP3 PF10236.9 gi|242398512|ref|YP_002993936.1| - 0.17 11.0 0.0 23 4.0 0.0 2.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 RuvA_C PF07499.13 gi|242398512|ref|YP_002993936.1| - 2.9 8.4 4.8 48 4.5 2.7 3.7 2 1 0 2 2 2 0 RuvA, C-terminal domain DJ-1_PfpI PF01965.24 gi|242398513|ref|YP_002993937.1| - 1.2e-57 194.3 0.0 1.3e-57 194.2 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 gi|242398513|ref|YP_002993937.1| - 0.00046 19.8 0.0 0.00069 19.3 0.0 1.2 1 0 0 1 1 1 1 C-terminal domain found in long catalases GATase PF00117.28 gi|242398513|ref|YP_002993937.1| - 0.00053 19.8 0.0 0.00064 19.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|242398513|ref|YP_002993937.1| - 0.044 13.4 0.0 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain SH3_12 PF18129.1 gi|242398513|ref|YP_002993937.1| - 0.096 12.8 0.2 1.4 9.1 0.0 2.2 2 0 0 2 2 2 0 Xrn1 SH3-like domain SNO PF01174.19 gi|242398513|ref|YP_002993937.1| - 0.16 11.8 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family CRS1_YhbY PF01985.21 gi|242398514|ref|YP_002993938.1| - 1.3e-13 50.9 0.1 1.3e-13 50.9 0.1 1.5 2 0 0 2 2 2 1 CRS1 / YhbY (CRM) domain HTH_Crp_2 PF13545.6 gi|242398514|ref|YP_002993938.1| - 0.0074 16.2 0.4 1.9 8.5 0.0 2.4 1 1 1 2 2 2 2 Crp-like helix-turn-helix domain PTRF_SDPR PF15237.6 gi|242398514|ref|YP_002993938.1| - 0.17 11.5 7.0 1.3 8.6 7.0 1.9 1 1 0 1 1 1 0 PTRF/SDPR family Ribosomal_S19e PF01090.19 gi|242398515|ref|YP_002993939.1| - 7.5e-57 190.9 0.0 8.5e-57 190.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.21 gi|242398515|ref|YP_002993939.1| - 0.00019 21.0 0.2 0.00055 19.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family DUF505 PF04458.12 gi|242398515|ref|YP_002993939.1| - 0.027 12.9 0.0 0.035 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_45 PF14947.6 gi|242398515|ref|YP_002993939.1| - 0.032 14.2 0.0 0.046 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_12 PF08461.10 gi|242398515|ref|YP_002993939.1| - 0.034 14.1 0.0 0.11 12.5 0.0 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain dsDNA_bind PF01984.20 gi|242398516|ref|YP_002993940.1| - 2.4e-25 88.9 18.0 2.7e-25 88.8 18.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Lipase_chap PF03280.14 gi|242398516|ref|YP_002993940.1| - 0.054 13.5 12.2 0.035 14.1 10.4 1.5 1 1 0 1 1 1 0 Proteobacterial lipase chaperone protein PP2C_C PF07830.13 gi|242398516|ref|YP_002993940.1| - 0.16 12.4 4.8 0.12 12.9 2.4 1.9 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain GvpG PF05120.12 gi|242398516|ref|YP_002993940.1| - 3.8 7.6 16.0 1.6 8.8 1.3 2.1 1 1 1 2 2 2 0 Gas vesicle protein G TFIIB PF00382.19 gi|242398518|ref|YP_002993942.1| - 7.4e-43 144.5 0.8 1.4e-20 73.1 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|242398518|ref|YP_002993942.1| - 6.7e-19 67.1 1.0 1.1e-18 66.5 1.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|242398518|ref|YP_002993942.1| - 6.2e-05 22.4 1.1 0.0055 16.2 0.4 3.6 4 0 0 4 4 4 1 Sigma-70, region 4 zf-RRN7 PF11781.8 gi|242398518|ref|YP_002993942.1| - 0.00049 19.7 1.0 0.00082 19.0 1.0 1.4 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 A2L_zn_ribbon PF08792.10 gi|242398518|ref|YP_002993942.1| - 0.0005 19.7 0.6 0.00079 19.1 0.6 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|242398518|ref|YP_002993942.1| - 0.00094 19.4 1.1 0.0017 18.6 1.1 1.4 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase HTH_AsnC-type PF13404.6 gi|242398518|ref|YP_002993942.1| - 0.0017 18.1 0.8 0.22 11.4 0.3 3.5 3 1 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|242398518|ref|YP_002993942.1| - 0.0021 17.4 0.1 0.28 10.6 0.1 3.4 3 1 1 4 4 4 1 Helix-turn-helix domain of transposase family ISL3 RB_B PF01857.20 gi|242398518|ref|YP_002993942.1| - 0.0025 17.8 0.0 0.0044 17.1 0.0 1.6 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain GerE PF00196.19 gi|242398518|ref|YP_002993942.1| - 0.0084 15.6 0.0 0.68 9.5 0.0 3.0 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family zf-ribbon_3 PF13248.6 gi|242398518|ref|YP_002993942.1| - 0.009 15.4 3.0 0.091 12.2 3.0 2.1 1 1 0 1 1 1 1 zinc-ribbon domain HTH_29 PF13551.6 gi|242398518|ref|YP_002993942.1| - 0.0097 15.9 0.1 9.4 6.3 0.0 3.8 4 0 0 4 4 4 0 Winged helix-turn helix Cyclin_N PF00134.23 gi|242398518|ref|YP_002993942.1| - 0.01 15.6 0.0 4.8 6.9 0.0 2.2 1 1 0 2 2 2 0 Cyclin, N-terminal domain HTH_11 PF08279.12 gi|242398518|ref|YP_002993942.1| - 0.013 15.4 0.2 2.4 8.2 0.0 2.6 2 0 0 2 2 2 0 HTH domain DUF2318 PF10080.9 gi|242398518|ref|YP_002993942.1| - 0.024 14.8 0.3 0.045 13.9 0.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Lar_restr_allev PF14354.6 gi|242398518|ref|YP_002993942.1| - 0.025 14.9 0.2 0.062 13.7 0.2 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar FYDLN_acid PF09538.10 gi|242398518|ref|YP_002993942.1| - 0.036 14.7 0.0 0.078 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) OrfB_Zn_ribbon PF07282.11 gi|242398518|ref|YP_002993942.1| - 0.047 13.6 0.1 0.09 12.7 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HARE-HTH PF05066.13 gi|242398518|ref|YP_002993942.1| - 0.073 13.5 0.0 17 5.9 0.0 3.0 2 1 1 3 3 3 0 HB1, ASXL, restriction endonuclease HTH domain HTH_23 PF13384.6 gi|242398518|ref|YP_002993942.1| - 0.11 12.3 3.4 4.7 7.1 0.1 3.8 5 0 0 5 5 4 0 Homeodomain-like domain RPA_interact_C PF14768.6 gi|242398518|ref|YP_002993942.1| - 0.17 12.4 0.0 0.33 11.5 0.0 1.5 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Zn_Tnp_IS1595 PF12760.7 gi|242398518|ref|YP_002993942.1| - 0.21 11.6 0.9 0.5 10.4 0.9 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|242398518|ref|YP_002993942.1| - 0.26 11.5 1.6 0.53 10.5 1.6 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) XPG_I PF00867.18 gi|242398519|ref|YP_002993943.1| - 9.7e-30 102.8 0.0 2.3e-29 101.6 0.0 1.7 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|242398519|ref|YP_002993943.1| - 2.9e-23 82.3 0.0 6e-23 81.2 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain Pep3_Vps18 PF05131.14 gi|242398519|ref|YP_002993943.1| - 0.0076 16.1 0.3 0.013 15.3 0.3 1.3 1 0 0 1 1 1 1 Pep3/Vps18/deep orange family TPR_2 PF07719.17 gi|242398519|ref|YP_002993943.1| - 0.26 11.5 1.6 0.8 10.0 1.0 2.2 1 1 0 1 1 1 0 Tetratricopeptide repeat Succ_CoA_lig PF13607.6 gi|242398520|ref|YP_002993944.1| - 2.1e-55 186.3 0.6 1.7e-54 183.3 0.2 2.5 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|242398520|ref|YP_002993944.1| - 3.4e-21 75.9 0.6 1.5e-19 70.6 0.1 2.4 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|242398520|ref|YP_002993944.1| - 1.6e-14 54.4 2.4 2.7e-14 53.6 1.1 2.1 2 0 0 2 2 2 1 CoA binding domain DUF4849 PF16141.5 gi|242398520|ref|YP_002993944.1| - 0.064 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative glycoside hydrolase Family 18, chitinase_18 Semialdhyde_dh PF01118.24 gi|242398520|ref|YP_002993944.1| - 0.44 11.0 3.2 0.36 11.3 0.8 2.1 2 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Topoisom_bac PF01131.20 gi|242398521|ref|YP_002993945.1| - 1.8e-82 277.6 4.2 1.6e-80 271.1 4.2 2.3 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|242398521|ref|YP_002993945.1| - 1.4e-26 92.7 0.3 1.1e-25 89.9 0.0 2.6 2 0 0 2 2 2 1 Toprim domain DEAD PF00270.29 gi|242398521|ref|YP_002993945.1| - 2.5e-12 46.9 0.1 1.3e-11 44.6 0.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|242398521|ref|YP_002993945.1| - 8.1e-11 42.3 1.8 2.3e-05 24.7 0.0 4.8 5 0 0 5 5 4 2 Helicase conserved C-terminal domain zf_Rg PF17915.1 gi|242398521|ref|YP_002993945.1| - 9.8e-09 34.5 1.9 1.5e-08 33.9 0.2 2.2 2 0 0 2 2 2 1 Reverse gyrase zinc finger ResIII PF04851.15 gi|242398521|ref|YP_002993945.1| - 7e-08 32.6 2.9 2.9e-07 30.7 0.8 2.7 1 1 0 2 2 2 1 Type III restriction enzyme, res subunit Zn-ribbon_8 PF09723.10 gi|242398521|ref|YP_002993945.1| - 0.00027 21.0 0.5 0.00027 21.0 0.5 2.2 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.19 gi|242398521|ref|YP_002993945.1| - 0.0015 18.5 1.7 0.036 14.1 0.0 2.9 3 0 0 3 3 3 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DctP PF03480.13 gi|242398521|ref|YP_002993945.1| - 0.0023 17.3 0.1 0.0051 16.2 0.1 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 OrfB_Zn_ribbon PF07282.11 gi|242398521|ref|YP_002993945.1| - 0.022 14.7 4.4 0.031 14.2 0.2 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|242398521|ref|YP_002993945.1| - 0.13 12.3 4.8 0.43 10.6 0.3 2.3 2 0 0 2 2 2 0 Double zinc ribbon TackOD1 PF18551.1 gi|242398521|ref|YP_002993945.1| - 0.15 11.8 2.5 0.16 11.6 0.1 2.2 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 Rubredoxin_2 PF18073.1 gi|242398521|ref|YP_002993945.1| - 0.35 10.6 9.4 0.23 11.2 5.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc-ribbons_6 PF07191.12 gi|242398521|ref|YP_002993945.1| - 1.9 8.6 6.2 6.9 6.7 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbons NOB1_Zn_bind PF08772.11 gi|242398521|ref|YP_002993945.1| - 3.3 7.9 4.6 0.54 10.5 0.1 2.0 2 0 0 2 2 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C4pol PF14260.6 gi|242398521|ref|YP_002993945.1| - 3.8 8.1 6.8 4.1 8.0 0.1 2.8 3 0 0 3 3 2 0 C4-type zinc-finger of DNA polymerase delta UPF0547 PF10571.9 gi|242398521|ref|YP_002993945.1| - 5.8 7.1 8.5 3.3 7.9 0.2 3.1 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 SWIM PF04434.17 gi|242398522|ref|YP_002993946.1| - 1e-06 28.2 0.3 2e-06 27.3 0.3 1.5 1 0 0 1 1 1 1 SWIM zinc finger GTP_EFTU PF00009.27 gi|242398523|ref|YP_002993947.1| - 2.9e-32 111.8 0.1 5.9e-31 107.5 0.0 2.6 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|242398523|ref|YP_002993947.1| - 3.2e-31 107.1 0.5 1.2e-30 105.2 0.5 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|242398523|ref|YP_002993947.1| - 5.5e-23 81.1 3.8 5.5e-23 81.1 3.8 2.1 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|242398523|ref|YP_002993947.1| - 4.1e-14 52.7 10.4 6e-13 49.0 0.1 3.7 5 0 0 5 5 5 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|242398523|ref|YP_002993947.1| - 1.1e-08 35.1 0.5 5.8e-08 32.8 0.0 2.5 2 1 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|242398523|ref|YP_002993947.1| - 0.00075 19.7 0.0 0.0043 17.3 0.0 2.3 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|242398523|ref|YP_002993947.1| - 0.0072 16.1 0.0 0.02 14.7 0.0 1.8 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Ras PF00071.22 gi|242398523|ref|YP_002993947.1| - 0.014 15.0 0.0 0.043 13.4 0.0 1.8 1 1 0 1 1 1 0 Ras family Dynamin_N PF00350.23 gi|242398523|ref|YP_002993947.1| - 0.044 13.8 0.0 0.81 9.7 0.0 2.6 1 1 1 2 2 2 0 Dynamin family Na_Ca_ex_C PF16494.5 gi|242398523|ref|YP_002993947.1| - 0.29 11.6 1.4 0.63 10.5 0.4 2.1 2 0 0 2 2 2 0 C-terminal extension of sodium/calcium exchanger domain Asn_synthase PF00733.21 gi|242398524|ref|YP_002993948.1| - 2.3e-05 24.2 0.0 5.4e-05 23.0 0.0 1.5 1 1 1 2 2 2 1 Asparagine synthase QueC PF06508.13 gi|242398524|ref|YP_002993948.1| - 6.8e-05 22.5 0.0 9.4e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|242398524|ref|YP_002993948.1| - 0.0024 16.7 0.0 0.0039 16.0 0.0 1.4 1 1 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.14 gi|242398524|ref|YP_002993948.1| - 0.0084 15.7 0.0 0.023 14.3 0.0 1.9 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.20 gi|242398524|ref|YP_002993948.1| - 0.0093 15.7 0.1 0.062 13.1 0.1 2.0 1 1 0 1 1 1 1 PP-loop family Diphthami_syn_2 PF01902.17 gi|242398524|ref|YP_002993948.1| - 0.027 14.0 0.0 0.043 13.3 0.0 1.5 1 0 0 1 1 1 0 Diphthamide synthase tRNA-synt_1c PF00749.21 gi|242398525|ref|YP_002993949.1| - 1.7e-82 276.9 0.0 2.4e-82 276.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|242398525|ref|YP_002993949.1| - 1e-30 106.9 0.0 2.1e-30 105.9 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain NDK PF00334.19 gi|242398526|ref|YP_002993950.1| - 6e-58 194.7 0.0 7e-58 194.4 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Peptidase_C69 PF03577.15 gi|242398527|ref|YP_002993951.1| - 1.7e-11 43.7 1.9 1.1e-10 41.1 0.7 2.1 1 1 1 2 2 2 2 Peptidase family C69 AAT PF03417.16 gi|242398527|ref|YP_002993951.1| - 0.00028 20.7 0.0 0.00048 19.9 0.0 1.6 1 1 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase Sm_multidrug_ex PF06695.11 gi|242398528|ref|YP_002993952.1| - 1.3e-29 103.3 4.7 1.6e-29 103.0 4.7 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein PmbA_TldD PF01523.16 gi|242398529|ref|YP_002993953.1| - 2.2e-48 165.5 1.4 2.7e-48 165.2 1.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PFO_beta_C PF12367.8 gi|242398529|ref|YP_002993953.1| - 0.12 12.5 0.1 0.32 11.2 0.1 1.7 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal PmbA_TldD PF01523.16 gi|242398530|ref|YP_002993954.1| - 1.5e-55 189.0 0.0 2.4e-55 188.4 0.0 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Autophagy_N PF03986.13 gi|242398530|ref|YP_002993954.1| - 0.13 12.2 0.1 4.5 7.2 0.0 2.3 2 0 0 2 2 2 0 Autophagocytosis associated protein (Atg3), N-terminal domain ABC_transp_aux PF09822.9 gi|242398531|ref|YP_002993955.1| - 1.7e-07 31.0 1.0 3e-07 30.2 0.1 1.9 2 1 1 3 3 3 1 ABC-type uncharacterized transport system ThuA PF06283.11 gi|242398531|ref|YP_002993955.1| - 5.1e-06 26.8 0.0 1.1e-05 25.8 0.0 1.6 1 0 0 1 1 1 1 Trehalose utilisation DUF4350 PF14258.6 gi|242398531|ref|YP_002993955.1| - 0.001 19.5 0.0 0.0024 18.3 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) GATase1_like PF07090.11 gi|242398531|ref|YP_002993955.1| - 0.034 13.6 0.0 0.075 12.5 0.0 1.5 1 0 0 1 1 1 0 Putative glutamine amidotransferase DUF4159 PF13709.6 gi|242398531|ref|YP_002993955.1| - 0.045 13.1 0.0 0.076 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) Big_7 PF17957.1 gi|242398531|ref|YP_002993955.1| - 0.094 13.5 0.2 1.7 9.5 0.0 3.0 3 0 0 3 3 3 0 Bacterial Ig domain Cob_adeno_trans PF01923.18 gi|242398532|ref|YP_002993956.1| - 5.5e-50 169.7 0.0 6.2e-50 169.5 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Phage_Mu_Gam PF07352.12 gi|242398532|ref|YP_002993956.1| - 0.025 14.5 1.5 0.033 14.1 1.5 1.4 1 1 0 1 1 1 0 Bacteriophage Mu Gam like protein DUF2621 PF11084.8 gi|242398532|ref|YP_002993956.1| - 0.029 14.3 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2621) Asp_Glu_race PF01177.22 gi|242398533|ref|YP_002993957.1| - 5.5e-67 225.9 0.0 6.2e-67 225.7 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 gi|242398533|ref|YP_002993957.1| - 0.064 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase Gram_pos_anchor PF00746.21 gi|242398534|ref|YP_002993958.1| - 0.044 13.7 0.6 0.066 13.2 0.6 1.3 1 0 0 1 1 1 0 LPXTG cell wall anchor motif RNase_H_2 PF13482.6 gi|242398535|ref|YP_002993959.1| - 2e-32 112.5 0.2 6.7e-32 110.8 0.0 1.9 3 0 0 3 3 3 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|242398535|ref|YP_002993959.1| - 4.4e-06 26.5 0.0 1e-05 25.3 0.0 1.6 2 0 0 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_exo1 PF03104.19 gi|242398535|ref|YP_002993959.1| - 1.8e-05 24.0 0.2 2.9e-05 23.4 0.2 1.2 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain HHH_5 PF14520.6 gi|242398535|ref|YP_002993959.1| - 0.0043 17.6 0.0 0.01 16.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|242398535|ref|YP_002993959.1| - 0.05 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda PTS_2-RNA PF01885.16 gi|242398535|ref|YP_002993959.1| - 0.12 12.4 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 RNA 2'-phosphotransferase, Tpt1 / KptA family Cdd1 PF11731.8 gi|242398535|ref|YP_002993959.1| - 0.17 12.2 0.0 0.31 11.3 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus TYW3 PF02676.14 gi|242398537|ref|YP_002993961.1| - 7.1e-38 130.1 0.0 9.4e-38 129.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 IF-2B PF01008.17 gi|242398538|ref|YP_002993962.1| - 2.2e-89 299.4 0.4 2.6e-89 299.2 0.4 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family BtrH_N PF14399.6 gi|242398538|ref|YP_002993962.1| - 0.041 14.1 0.5 0.69 10.2 0.0 2.4 1 1 1 2 2 2 0 Butirosin biosynthesis protein H, N-terminal Aminotran_1_2 PF00155.21 gi|242398539|ref|YP_002993963.1| - 1.5e-40 139.5 0.0 1.7e-40 139.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|242398539|ref|YP_002993963.1| - 1.1e-15 57.4 0.0 1.6e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase MerR-DNA-bind PF09278.11 gi|242398539|ref|YP_002993963.1| - 0.14 12.7 0.2 2.7 8.6 0.0 2.6 2 0 0 2 2 2 0 MerR, DNA binding HTH_19 PF12844.7 gi|242398540|ref|YP_002993964.1| - 3.9e-10 39.6 0.1 2e-09 37.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|242398540|ref|YP_002993964.1| - 6.2e-08 32.6 0.0 1.5e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|242398540|ref|YP_002993964.1| - 3.5e-07 30.5 0.0 7.4e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|242398540|ref|YP_002993964.1| - 0.092 12.3 0.1 0.24 11.0 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MqsA_antitoxin PF15731.5 gi|242398540|ref|YP_002993964.1| - 0.12 12.4 0.0 0.29 11.3 0.0 1.7 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_26 PF13443.6 gi|242398540|ref|YP_002993964.1| - 0.13 12.7 0.0 1 9.8 0.0 2.3 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain PPS_PS PF02006.16 gi|242398541|ref|YP_002993965.1| - 4.7e-76 254.3 1.0 5.9e-76 253.9 1.0 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Dsl1_N PF11988.8 gi|242398541|ref|YP_002993965.1| - 0.23 10.4 2.0 0.23 10.4 0.3 1.7 2 0 0 2 2 2 0 Retrograde transport protein Dsl1 N terminal DUF3837 PF12939.7 gi|242398542|ref|YP_002993966.1| - 0.008 16.6 0.0 0.016 15.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3837) DUF4359 PF14271.6 gi|242398542|ref|YP_002993966.1| - 0.075 13.8 0.0 0.14 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4359) DUF4547 PF15080.6 gi|242398543|ref|YP_002993967.1| - 0.016 14.9 0.3 0.11 12.1 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4547) Meth_synt_2 PF01717.18 gi|242398544|ref|YP_002993968.1| - 0.08 12.2 0.0 0.097 11.9 0.0 1.1 1 0 0 1 1 1 0 Cobalamin-independent synthase, Catalytic domain Baculo_PEP_C PF04513.12 gi|242398545|ref|YP_002993969.1| - 1.2e-13 51.3 34.0 0.0025 17.9 0.8 6.8 3 2 3 6 6 6 5 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.6 gi|242398545|ref|YP_002993969.1| - 4.1e-10 39.0 92.9 6.6e-06 25.1 33.4 4.7 1 1 4 5 5 5 4 AAA domain Rad50_zn_hook PF04423.14 gi|242398545|ref|YP_002993969.1| - 1.4e-09 37.6 1.0 1.4e-09 37.6 1.0 11.4 12 4 1 15 15 8 1 Rad50 zinc hook motif AAA_21 PF13304.6 gi|242398545|ref|YP_002993969.1| - 1.6e-08 34.7 13.8 1.6e-08 34.7 13.8 3.2 2 2 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF1664 PF07889.12 gi|242398545|ref|YP_002993969.1| - 6e-08 32.8 74.1 0.00023 21.2 6.7 8.4 2 2 6 8 8 8 3 Protein of unknown function (DUF1664) AAA_15 PF13175.6 gi|242398545|ref|YP_002993969.1| - 6.7e-08 32.6 25.3 6.7e-08 32.6 25.3 4.2 1 1 1 2 2 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|242398545|ref|YP_002993969.1| - 2.1e-07 31.1 0.0 5.3e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NPV_P10 PF05531.12 gi|242398545|ref|YP_002993969.1| - 2.3e-07 31.1 46.7 0.0074 16.7 0.7 9.0 6 3 1 7 7 6 3 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|242398545|ref|YP_002993969.1| - 7.2e-07 28.4 115.5 0.0078 15.1 20.0 5.3 1 1 5 6 6 6 5 Spc7 kinetochore protein DUF4407 PF14362.6 gi|242398545|ref|YP_002993969.1| - 1.2e-05 24.8 56.6 0.0085 15.5 10.4 4.5 2 1 2 4 4 4 3 Domain of unknown function (DUF4407) DUF812 PF05667.11 gi|242398545|ref|YP_002993969.1| - 3.4e-05 23.0 112.0 0.0028 16.6 40.5 3.7 1 1 2 3 3 3 2 Protein of unknown function (DUF812) CorA PF01544.18 gi|242398545|ref|YP_002993969.1| - 0.0001 21.8 9.2 0.0001 21.8 9.2 5.0 3 2 1 5 5 5 2 CorA-like Mg2+ transporter protein Laminin_II PF06009.12 gi|242398545|ref|YP_002993969.1| - 0.00013 22.0 78.6 0.0051 16.8 14.7 6.4 2 2 3 6 6 6 3 Laminin Domain II Prominin PF05478.11 gi|242398545|ref|YP_002993969.1| - 0.00018 19.7 11.8 0.00018 19.7 11.8 3.6 1 1 1 3 3 3 2 Prominin Seryl_tRNA_N PF02403.22 gi|242398545|ref|YP_002993969.1| - 0.00031 20.9 11.6 0.00031 20.9 11.6 8.6 2 2 6 8 8 8 2 Seryl-tRNA synthetase N-terminal domain YkyA PF10368.9 gi|242398545|ref|YP_002993969.1| - 0.0006 19.5 27.0 0.0006 19.5 27.0 6.5 2 2 3 5 5 4 1 Putative cell-wall binding lipoprotein DUF3584 PF12128.8 gi|242398545|ref|YP_002993969.1| - 0.0025 15.4 86.0 0.0018 15.9 26.3 3.1 1 1 2 3 3 3 2 Protein of unknown function (DUF3584) Sec8_exocyst PF04048.14 gi|242398545|ref|YP_002993969.1| - 0.0027 17.6 11.9 0.0027 17.6 11.9 7.6 2 2 5 7 7 7 1 Sec8 exocyst complex component specific domain DUF16 PF01519.16 gi|242398545|ref|YP_002993969.1| - 0.0034 17.9 12.2 0.0034 17.9 12.2 8.8 2 2 5 7 7 7 1 Protein of unknown function DUF16 ATG16 PF08614.11 gi|242398545|ref|YP_002993969.1| - 0.0039 17.5 100.2 0.46 10.7 25.4 6.4 1 1 4 5 5 5 3 Autophagy protein 16 (ATG16) DUF713 PF05218.14 gi|242398545|ref|YP_002993969.1| - 0.0043 16.8 14.3 0.0043 16.8 14.3 6.0 2 2 4 6 6 5 1 Protein of unknown function (DUF713) Sec34 PF04136.15 gi|242398545|ref|YP_002993969.1| - 0.0045 16.9 69.4 0.036 14.0 8.3 7.6 3 3 3 7 7 7 3 Sec34-like family Mce4_CUP1 PF11887.8 gi|242398545|ref|YP_002993969.1| - 0.0045 16.5 6.8 0.22 10.9 0.2 3.6 4 0 0 4 4 4 1 Cholesterol uptake porter CUP1 of Mce4, putative TPR_MLP1_2 PF07926.12 gi|242398545|ref|YP_002993969.1| - 0.0049 16.9 113.3 0.072 13.2 12.4 8.4 3 3 1 6 6 6 2 TPR/MLP1/MLP2-like protein CENP-F_leu_zip PF10473.9 gi|242398545|ref|YP_002993969.1| - 0.0071 16.4 135.6 0.42 10.6 31.9 6.7 1 1 3 5 5 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fzo_mitofusin PF04799.13 gi|242398545|ref|YP_002993969.1| - 0.0079 15.8 8.1 0.0079 15.8 8.1 8.6 3 3 6 9 9 9 2 fzo-like conserved region GAS PF13851.6 gi|242398545|ref|YP_002993969.1| - 0.0082 15.5 128.2 0.24 10.7 27.0 6.5 1 1 3 6 6 6 4 Growth-arrest specific micro-tubule binding FUSC PF04632.12 gi|242398545|ref|YP_002993969.1| - 0.0083 14.7 9.2 0.071 11.6 0.1 3.3 2 1 2 4 4 4 1 Fusaric acid resistance protein family DUF3287 PF11690.8 gi|242398545|ref|YP_002993969.1| - 0.011 15.5 3.4 0.011 15.5 3.4 5.3 3 1 3 6 6 3 0 Protein of unknown function (DUF3287) Syntaxin-6_N PF09177.11 gi|242398545|ref|YP_002993969.1| - 0.016 15.7 80.0 0.16 12.5 14.3 8.7 1 1 6 7 7 5 0 Syntaxin 6, N-terminal OrfB_IS605 PF01385.19 gi|242398545|ref|YP_002993969.1| - 0.02 15.1 2.8 0.02 15.1 2.8 6.8 4 2 3 7 7 7 0 Probable transposase Exonuc_VII_L PF02601.15 gi|242398545|ref|YP_002993969.1| - 0.022 14.3 68.5 0.031 13.8 9.2 4.3 1 1 3 4 4 4 0 Exonuclease VII, large subunit Fib_alpha PF08702.10 gi|242398545|ref|YP_002993969.1| - 0.026 14.7 82.2 0.044 14.0 8.0 6.1 3 2 3 6 6 6 0 Fibrinogen alpha/beta chain family DUF948 PF06103.11 gi|242398545|ref|YP_002993969.1| - 0.031 14.5 41.3 0.12 12.6 2.0 8.2 1 1 7 8 8 7 0 Bacterial protein of unknown function (DUF948) Syntaxin_2 PF14523.6 gi|242398545|ref|YP_002993969.1| - 0.036 14.4 77.2 0.17 12.3 2.2 8.4 1 1 7 8 8 8 0 Syntaxin-like protein T3SSipB PF16535.5 gi|242398545|ref|YP_002993969.1| - 0.06 13.8 47.9 2.7 8.5 4.2 6.7 2 2 4 7 7 7 0 Type III cell invasion protein SipB APG6_N PF17675.1 gi|242398545|ref|YP_002993969.1| - 0.086 13.4 138.8 2 9.0 23.1 7.7 1 1 5 6 6 5 0 Apg6 coiled-coil region MCPsignal PF00015.21 gi|242398545|ref|YP_002993969.1| - 0.091 12.6 44.4 0.24 11.2 1.6 6.7 2 2 5 7 7 7 0 Methyl-accepting chemotaxis protein (MCP) signalling domain WXG100 PF06013.12 gi|242398545|ref|YP_002993969.1| - 0.11 12.7 29.3 0.098 12.9 1.5 8.3 8 2 2 10 10 7 0 Proteins of 100 residues with WXG BLOC1_2 PF10046.9 gi|242398545|ref|YP_002993969.1| - 0.12 12.7 96.2 2.2 8.7 9.0 10.7 3 2 7 11 11 11 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 LPP PF04728.13 gi|242398545|ref|YP_002993969.1| - 0.16 12.4 39.7 0.13 12.6 2.6 9.5 8 1 1 9 9 8 0 Lipoprotein leucine-zipper SKA1 PF07160.12 gi|242398545|ref|YP_002993969.1| - 0.16 11.8 82.8 0.39 10.5 3.5 7.4 1 1 6 7 7 7 0 Spindle and kinetochore-associated protein 1 PRT_C PF08372.10 gi|242398545|ref|YP_002993969.1| - 0.2 11.4 1.4 0.63 9.8 0.2 2.5 2 0 0 2 2 2 0 Plant phosphoribosyltransferase C-terminal EzrA PF06160.12 gi|242398545|ref|YP_002993969.1| - 0.29 9.3 112.2 0.97 7.5 23.2 4.4 1 1 1 3 3 3 0 Septation ring formation regulator, EzrA PilJ PF13675.6 gi|242398545|ref|YP_002993969.1| - 0.38 10.8 23.8 2.1 8.4 0.2 6.7 4 2 3 7 7 6 0 Type IV pili methyl-accepting chemotaxis transducer N-term MscS_porin PF12795.7 gi|242398545|ref|YP_002993969.1| - 0.69 9.4 77.8 0.067 12.7 14.5 5.3 2 2 1 4 4 4 0 Mechanosensitive ion channel porin domain ALIX_LYPXL_bnd PF13949.6 gi|242398545|ref|YP_002993969.1| - 0.75 9.0 80.5 0.069 12.4 27.0 3.5 1 1 2 3 3 3 0 ALIX V-shaped domain binding to HIV DASH_Hsk3 PF08227.11 gi|242398545|ref|YP_002993969.1| - 0.83 10.1 11.0 1.8 9.0 4.6 4.0 3 0 0 3 3 3 0 DASH complex subunit Hsk3 like TLV_coat PF00429.19 gi|242398545|ref|YP_002993969.1| - 1.6 7.3 5.0 15 4.1 5.0 2.7 1 1 0 1 1 1 0 ENV polyprotein (coat polyprotein) COG2 PF06148.11 gi|242398545|ref|YP_002993969.1| - 1.7 8.7 77.7 1 9.5 6.3 9.3 2 2 6 8 8 8 0 COG (conserved oligomeric Golgi) complex component, COG2 Uso1_p115_C PF04871.13 gi|242398545|ref|YP_002993969.1| - 1.8 8.9 113.3 0.023 15.0 10.4 6.9 2 2 6 8 8 7 0 Uso1 / p115 like vesicle tethering protein, C terminal region Filo_VP35 PF02097.15 gi|242398545|ref|YP_002993969.1| - 2.2 7.3 13.3 0.86 8.6 0.5 4.3 3 1 1 4 4 4 0 Filoviridae VP35 Fez1 PF06818.15 gi|242398545|ref|YP_002993969.1| - 2.3 8.7 98.0 31 4.9 18.3 5.5 1 1 3 4 4 4 0 Fez1 Tektin PF03148.14 gi|242398545|ref|YP_002993969.1| - 2.5 6.8 97.9 0.076 11.8 20.1 6.7 2 1 1 4 4 4 0 Tektin family APG17 PF04108.12 gi|242398545|ref|YP_002993969.1| - 2.8 7.0 76.5 0.78 8.8 8.0 6.8 1 1 5 6 6 6 0 Autophagy protein Apg17 Prefoldin_2 PF01920.20 gi|242398545|ref|YP_002993969.1| - 3.9 7.5 140.8 0.081 12.9 5.4 11.8 3 2 9 12 12 12 0 Prefoldin subunit DUF4201 PF13870.6 gi|242398545|ref|YP_002993969.1| - 4.5 7.0 114.0 0.013 15.2 30.8 6.5 2 2 4 6 6 6 0 Domain of unknown function (DUF4201) DUF5082 PF16888.5 gi|242398545|ref|YP_002993969.1| - 4.5 7.6 95.2 0.64 10.3 18.6 8.9 2 2 4 7 7 7 0 Domain of unknown function (DUF5082) COG5 PF10392.9 gi|242398545|ref|YP_002993969.1| - 5.1 7.3 66.2 2.7 8.2 1.5 7.9 2 2 6 8 8 8 0 Golgi transport complex subunit 5 Laminin_I PF06008.14 gi|242398545|ref|YP_002993969.1| - 6.1 6.5 83.5 0.015 15.1 22.5 4.8 3 1 1 4 4 4 0 Laminin Domain I MAD PF05557.13 gi|242398545|ref|YP_002993969.1| - 8.3 4.6 115.3 0.68 8.2 48.0 2.7 1 1 0 2 2 2 0 Mitotic checkpoint protein MbeD_MobD PF04899.12 gi|242398545|ref|YP_002993969.1| - 9.4 6.4 15.6 3.1 8.0 2.4 5.4 4 2 1 6 6 6 0 MbeD/MobD like Metallophos PF00149.28 gi|242398546|ref|YP_002993970.1| - 1.6e-13 51.6 0.2 6.7e-13 49.6 0.0 2.1 2 1 1 3 3 3 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|242398546|ref|YP_002993970.1| - 8.2e-12 45.6 0.0 1.4e-11 44.8 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TetR_C_24 PF17932.1 gi|242398546|ref|YP_002993970.1| - 0.072 13.4 0.0 0.56 10.5 0.0 2.1 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain AF0941-like PF14591.6 gi|242398547|ref|YP_002993971.1| - 0.0045 17.5 11.1 0.0049 17.4 7.6 2.5 1 1 1 2 2 2 1 AF0941-like Swi5 PF07061.11 gi|242398547|ref|YP_002993971.1| - 0.025 14.7 0.7 0.13 12.4 0.2 2.4 3 0 0 3 3 3 0 Swi5 DUF1043 PF06295.12 gi|242398547|ref|YP_002993971.1| - 0.069 13.2 0.3 0.16 12.0 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) LUD_dom PF02589.15 gi|242398547|ref|YP_002993971.1| - 0.091 12.5 0.3 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 LUD domain Laminin_II PF06009.12 gi|242398547|ref|YP_002993971.1| - 0.19 11.7 2.0 0.75 9.8 0.8 2.1 1 1 1 2 2 2 0 Laminin Domain II V-SNARE PF05008.15 gi|242398547|ref|YP_002993971.1| - 2.1 8.8 7.9 2.1 8.8 3.1 3.1 3 2 0 3 3 3 0 Vesicle transport v-SNARE protein N-terminus DUF87 PF01935.17 gi|242398548|ref|YP_002993972.1| - 2.2e-38 132.6 2.2 5.2e-38 131.4 0.3 2.1 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|242398548|ref|YP_002993972.1| - 6e-13 48.2 0.1 5e-09 35.3 0.1 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|242398548|ref|YP_002993972.1| - 7e-07 29.3 3.1 7.7e-07 29.2 1.1 2.1 2 0 0 2 2 2 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|242398548|ref|YP_002993972.1| - 3.8e-05 22.8 0.2 0.0041 16.1 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|242398548|ref|YP_002993972.1| - 7.9e-05 21.7 0.1 0.0056 15.6 0.1 2.5 2 1 0 2 2 2 1 AAA-like domain AAA PF00004.29 gi|242398548|ref|YP_002993972.1| - 0.0053 17.2 0.0 0.06 13.8 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) GCP5-Mod21 PF14609.6 gi|242398548|ref|YP_002993972.1| - 0.0089 14.4 0.1 0.9 7.8 0.0 2.2 2 0 0 2 2 2 2 gamma-Tubulin ring complex non-core subunit mod21 ResIII PF04851.15 gi|242398548|ref|YP_002993972.1| - 0.011 15.8 0.1 0.31 11.0 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Zot PF05707.12 gi|242398548|ref|YP_002993972.1| - 0.014 15.0 0.0 0.042 13.5 0.0 1.8 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_22 PF13401.6 gi|242398548|ref|YP_002993972.1| - 0.017 15.4 0.0 2.1 8.6 0.0 2.8 2 1 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|242398548|ref|YP_002993972.1| - 0.021 14.2 0.0 0.27 10.6 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family T4SS-DNA_transf PF02534.14 gi|242398548|ref|YP_002993972.1| - 0.066 12.0 0.0 0.1 11.3 0.0 1.4 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer Torsin PF06309.11 gi|242398548|ref|YP_002993972.1| - 0.17 12.0 0.0 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Torsin NurA PF09376.10 gi|242398549|ref|YP_002993973.1| - 5.9e-19 68.7 0.1 1e-18 68.0 0.1 1.4 1 1 0 1 1 1 1 NurA domain Syntaxin-18_N PF10496.9 gi|242398549|ref|YP_002993973.1| - 0.16 12.3 0.7 9.1 6.6 0.1 2.4 2 0 0 2 2 2 0 SNARE-complex protein Syntaxin-18 N-terminus DUF917 PF06032.12 gi|242398550|ref|YP_002993974.1| - 0.024 13.5 0.2 0.024 13.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF917) EVE PF01878.18 gi|242398550|ref|YP_002993974.1| - 0.11 12.5 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 EVE domain Asp_Glu_race PF01177.22 gi|242398551|ref|YP_002993975.1| - 1.7e-14 54.3 0.2 6.7e-14 52.3 0.2 1.7 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 gi|242398551|ref|YP_002993975.1| - 3.9e-08 33.0 2.3 3.9e-05 23.2 0.1 2.1 2 0 0 2 2 2 2 Ketopantoate hydroxymethyltransferase Amdase PF17645.1 gi|242398551|ref|YP_002993975.1| - 1e-05 25.3 0.2 0.0033 17.1 0.0 2.2 2 0 0 2 2 2 2 Arylmalonate decarboxylase AroM PF07302.11 gi|242398551|ref|YP_002993975.1| - 1.5e-05 24.5 0.1 4.1e-05 23.1 0.1 1.6 1 1 0 1 1 1 1 AroM protein Peripla_BP_1 PF00532.21 gi|242398551|ref|YP_002993975.1| - 0.00047 19.7 0.1 0.4 10.1 0.0 2.1 1 1 1 2 2 2 2 Periplasmic binding proteins and sugar binding domain of LacI family HAD PF12710.7 gi|242398551|ref|YP_002993975.1| - 0.0012 19.2 0.2 1.6 9.1 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Peripla_BP_6 PF13458.6 gi|242398551|ref|YP_002993975.1| - 0.039 13.6 0.2 2.3 7.8 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein Nitro_FeMo-Co PF02579.17 gi|242398551|ref|YP_002993975.1| - 0.18 12.2 0.6 18 5.8 0.0 2.4 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor AsnC_trans_reg PF01037.21 gi|242398552|ref|YP_002993976.1| - 4.5e-06 26.5 0.0 5.9e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|242398552|ref|YP_002993976.1| - 0.0046 16.8 0.1 0.007 16.2 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|242398552|ref|YP_002993976.1| - 0.021 14.4 0.1 0.038 13.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TFIIS_C PF01096.18 gi|242398553|ref|YP_002993977.1| - 5.6e-22 77.3 14.2 1.8e-21 75.7 3.1 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|242398553|ref|YP_002993977.1| - 2.2e-14 53.0 13.1 1e-12 47.7 2.3 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|242398553|ref|YP_002993977.1| - 8.1e-07 28.5 10.6 0.00097 18.6 1.8 2.8 2 1 0 2 2 2 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|242398553|ref|YP_002993977.1| - 1.5e-06 28.1 12.5 0.0034 17.3 2.2 3.2 2 2 1 3 3 3 3 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|242398553|ref|YP_002993977.1| - 5.6e-06 26.2 6.5 0.0014 18.5 0.3 2.7 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|242398553|ref|YP_002993977.1| - 1.2e-05 24.8 14.9 0.09 12.5 0.1 4.2 4 0 0 4 4 4 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|242398553|ref|YP_002993977.1| - 2.4e-05 24.2 3.2 0.086 12.8 0.2 3.2 3 0 0 3 3 3 2 PhnA Zinc-Ribbon DZR PF12773.7 gi|242398553|ref|YP_002993977.1| - 4.3e-05 23.4 6.2 0.047 13.7 6.3 2.6 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|242398553|ref|YP_002993977.1| - 0.00014 21.5 8.6 0.029 14.1 1.8 3.9 3 1 0 3 3 3 1 A2L zinc ribbon domain Baculo_LEF5_C PF11792.8 gi|242398553|ref|YP_002993977.1| - 0.00015 21.4 0.0 0.00015 21.4 0.0 3.9 4 0 0 4 4 4 1 Baculoviridae late expression factor 5 C-terminal domain zinc_ribbon_4 PF13717.6 gi|242398553|ref|YP_002993977.1| - 0.00026 20.8 12.3 0.47 10.4 0.2 4.3 3 1 0 3 3 3 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|242398553|ref|YP_002993977.1| - 0.00062 19.1 17.7 0.072 12.5 4.9 4.0 3 1 0 3 3 3 2 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|242398553|ref|YP_002993977.1| - 0.0011 18.5 12.8 1.6 8.4 0.8 4.2 4 0 0 4 4 4 1 C2H2 type zinc-finger IBR PF01485.21 gi|242398553|ref|YP_002993977.1| - 0.0014 18.9 9.4 0.014 15.6 1.0 2.9 2 1 0 2 2 2 1 IBR domain, a half RING-finger domain Lar_restr_allev PF14354.6 gi|242398553|ref|YP_002993977.1| - 0.0081 16.5 8.0 0.42 11.0 0.6 2.6 2 1 0 2 2 2 2 Restriction alleviation protein Lar zinc_ribbon_13 PF09855.9 gi|242398553|ref|YP_002993977.1| - 0.0081 16.3 14.0 2.8 8.2 2.7 4.0 2 2 1 3 3 3 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Elf1 PF05129.13 gi|242398553|ref|YP_002993977.1| - 0.01 15.8 2.4 0.51 10.4 0.1 2.5 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like HypA PF01155.19 gi|242398553|ref|YP_002993977.1| - 0.016 15.2 6.4 0.45 10.6 3.1 2.8 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|242398553|ref|YP_002993977.1| - 0.022 14.9 3.6 0.022 14.9 3.6 2.8 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF35_N PF12172.8 gi|242398553|ref|YP_002993977.1| - 0.028 14.3 9.0 6.4 6.8 0.1 4.0 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_S27e PF01667.17 gi|242398553|ref|YP_002993977.1| - 0.033 13.9 7.8 0.41 10.4 0.3 3.0 2 1 0 2 2 2 0 Ribosomal protein S27 zf_UBZ PF18439.1 gi|242398553|ref|YP_002993977.1| - 0.06 13.0 10.7 2.1 8.0 0.1 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger Rpr2 PF04032.16 gi|242398553|ref|YP_002993977.1| - 0.071 13.4 6.0 1 9.7 6.0 2.4 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF2387 PF09526.10 gi|242398553|ref|YP_002993977.1| - 0.078 13.1 8.5 2 8.6 1.5 2.6 2 2 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-Mss51 PF13824.6 gi|242398553|ref|YP_002993977.1| - 0.078 13.1 11.7 4.3 7.5 0.2 3.6 2 2 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ACC PF17848.1 gi|242398553|ref|YP_002993977.1| - 0.088 12.9 13.9 1.8 8.7 2.7 4.0 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain eIF-5_eIF-2B PF01873.17 gi|242398553|ref|YP_002993977.1| - 0.098 12.5 3.8 0.4 10.6 0.1 2.2 2 0 0 2 2 2 0 Domain found in IF2B/IF5 Cys_rich_CPCC PF14206.6 gi|242398553|ref|YP_002993977.1| - 0.11 12.4 0.1 0.11 12.4 0.1 2.7 3 0 0 3 3 3 0 Cysteine-rich CPCC Nudix_N_2 PF14803.6 gi|242398553|ref|YP_002993977.1| - 0.11 12.4 17.6 3.6 7.6 2.5 4.1 2 2 0 2 2 2 0 Nudix N-terminal UPF0547 PF10571.9 gi|242398553|ref|YP_002993977.1| - 0.12 12.5 16.7 4.6 7.4 0.4 4.3 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.12 gi|242398553|ref|YP_002993977.1| - 0.14 12.1 5.8 1.1 9.3 0.2 2.6 2 1 0 2 2 2 0 zinc-ribbons Rubredoxin_2 PF18073.1 gi|242398553|ref|YP_002993977.1| - 0.15 11.8 20.2 0.38 10.5 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain CK_II_beta PF01214.18 gi|242398553|ref|YP_002993977.1| - 0.18 11.6 1.8 3.3 7.5 0.3 2.1 1 1 1 2 2 2 0 Casein kinase II regulatory subunit RPA_interact_C PF14768.6 gi|242398553|ref|YP_002993977.1| - 0.22 12.1 4.4 10 6.8 4.4 2.7 1 1 0 1 1 1 0 Replication protein A interacting C-terminal Ribosomal_L37ae PF01780.19 gi|242398553|ref|YP_002993977.1| - 0.3 11.2 9.3 1.3 9.2 0.8 3.1 2 2 0 2 2 2 0 Ribosomal L37ae protein family Zn-ribbon_8 PF09723.10 gi|242398553|ref|YP_002993977.1| - 0.34 11.0 18.4 10 6.3 0.8 4.3 3 1 0 3 3 3 0 Zinc ribbon domain Terminase_GpA PF05876.12 gi|242398553|ref|YP_002993977.1| - 0.39 9.2 3.8 0.26 9.8 0.6 1.9 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) DNA_RNApol_7kD PF03604.13 gi|242398553|ref|YP_002993977.1| - 0.44 10.3 13.0 7.5 6.3 2.5 3.5 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DpnI PF06044.12 gi|242398553|ref|YP_002993977.1| - 0.46 10.1 3.9 1.9 8.1 0.4 2.1 1 1 0 2 2 2 0 Dam-replacing family zinc_ribbon_10 PF10058.9 gi|242398553|ref|YP_002993977.1| - 0.49 10.2 13.7 0.41 10.4 2.4 3.7 2 2 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-TFIIB PF13453.6 gi|242398553|ref|YP_002993977.1| - 0.61 9.5 13.1 1 8.8 1.4 3.1 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-tcix PF14952.6 gi|242398553|ref|YP_002993977.1| - 0.68 9.6 15.6 6.4 6.5 0.2 4.1 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding CpXC PF14353.6 gi|242398553|ref|YP_002993977.1| - 0.88 9.6 12.1 2.1 8.4 1.4 3.9 1 1 3 4 4 4 0 CpXC protein zf-H2C2_2 PF13465.6 gi|242398553|ref|YP_002993977.1| - 1.9 9.0 13.4 14 6.3 0.2 4.1 4 0 0 4 4 4 0 Zinc-finger double domain zf-NADH-PPase PF09297.11 gi|242398553|ref|YP_002993977.1| - 2.1 8.1 12.3 4.2 7.1 3.9 3.6 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain ADK_lid PF05191.14 gi|242398553|ref|YP_002993977.1| - 2.8 8.0 12.0 10 6.2 0.2 4.0 4 0 0 4 4 4 0 Adenylate kinase, active site lid DUF3797 PF12677.7 gi|242398553|ref|YP_002993977.1| - 2.9 7.8 16.6 3.1 7.8 5.5 3.1 2 2 0 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_15 PF17032.5 gi|242398553|ref|YP_002993977.1| - 3.1 8.6 11.6 6.1 7.7 3.4 3.1 1 1 0 2 2 2 0 zinc-ribbon family C1_1 PF00130.22 gi|242398553|ref|YP_002993977.1| - 3.3 7.7 9.6 0.85 9.6 1.1 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Baculo_ME53 PF06061.11 gi|242398553|ref|YP_002993977.1| - 3.7 6.7 5.7 2.3 7.4 0.4 2.3 1 1 0 2 2 2 0 Baculoviridae ME53 DUF1610 PF07754.11 gi|242398553|ref|YP_002993977.1| - 3.8 7.6 18.1 2.5 8.2 0.6 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) Ogr_Delta PF04606.12 gi|242398553|ref|YP_002993977.1| - 5.6 7.0 11.5 1.3 9.1 1.9 3.0 2 2 1 3 3 3 0 Ogr/Delta-like zinc finger Prok-RING_1 PF14446.6 gi|242398553|ref|YP_002993977.1| - 5.7 7.0 9.4 2.7 8.0 1.0 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Zn_ribbon_SprT PF17283.2 gi|242398553|ref|YP_002993977.1| - 6 6.9 15.5 4.5 7.3 1.0 3.6 3 1 0 3 3 3 0 SprT-like zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|242398553|ref|YP_002993977.1| - 6 7.1 16.3 6.7 7.0 4.5 3.7 2 2 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-C4_Topoisom PF01396.19 gi|242398553|ref|YP_002993977.1| - 6.4 6.6 16.2 5.7 6.8 3.0 3.3 2 2 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.6 gi|242398553|ref|YP_002993977.1| - 7.4 7.3 14.5 7.2 7.4 0.1 4.0 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF3268 PF11672.8 gi|242398553|ref|YP_002993977.1| - 8.4 6.8 7.2 2.2 8.6 0.7 2.4 2 1 0 2 2 2 0 zinc-finger-containing domain PCNA_N PF00705.18 gi|242398555|ref|YP_002993979.1| - 2.1e-19 69.5 0.1 6.1e-17 61.5 0.0 2.1 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|242398555|ref|YP_002993979.1| - 1.6e-09 38.0 0.0 7.6e-09 35.8 0.0 2.1 3 0 0 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|242398555|ref|YP_002993979.1| - 2e-08 33.6 0.0 5.5e-06 25.7 0.0 2.0 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|242398555|ref|YP_002993979.1| - 0.0021 17.6 0.0 0.0041 16.6 0.0 1.8 1 1 0 1 1 1 1 Rad9 DUF4901 PF16244.5 gi|242398555|ref|YP_002993979.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4901) Mga PF05043.13 gi|242398556|ref|YP_002993980.1| - 0.0081 16.7 0.4 0.014 15.9 0.4 1.6 1 1 0 1 1 1 1 Mga helix-turn-helix domain Molybdopterin PF00384.22 gi|242398557|ref|YP_002993981.1| - 5.1e-45 154.2 0.0 6.4e-44 150.6 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|242398557|ref|YP_002993981.1| - 1.5e-19 70.1 0.0 3.1e-19 69.0 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|242398557|ref|YP_002993981.1| - 1.5e-05 24.9 0.0 3.2e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain MEDS PF14417.6 gi|242398557|ref|YP_002993981.1| - 0.087 12.6 0.0 0.32 10.8 0.0 2.1 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain FeS_assembly_P PF01883.19 gi|242398558|ref|YP_002993982.1| - 0.00078 19.6 0.0 0.001 19.2 0.0 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein FeS_assembly_P PF01883.19 gi|242398559|ref|YP_002993983.1| - 4.6e-09 36.3 0.0 6.9e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein UPF0128 PF03673.13 gi|242398559|ref|YP_002993983.1| - 0.0035 16.9 0.8 0.24 10.9 0.2 2.1 1 1 0 2 2 2 2 Uncharacterised protein family (UPF0128) E2F_TDP PF02319.20 gi|242398559|ref|YP_002993983.1| - 0.011 15.8 0.2 0.015 15.3 0.2 1.4 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain TTL PF03133.15 gi|242398559|ref|YP_002993983.1| - 0.065 12.4 0.0 0.091 11.9 0.0 1.1 1 0 0 1 1 1 0 Tubulin-tyrosine ligase family DUF4911 PF16256.5 gi|242398559|ref|YP_002993983.1| - 0.11 12.6 0.0 10 6.2 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4911) Aldo_ket_red PF00248.21 gi|242398560|ref|YP_002993984.1| - 1.6e-63 214.7 0.0 7.9e-62 209.1 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family AP2 PF00847.20 gi|242398560|ref|YP_002993984.1| - 0.051 13.8 0.1 0.11 12.8 0.1 1.5 1 0 0 1 1 1 0 AP2 domain Lys_export PF03956.13 gi|242398561|ref|YP_002993985.1| - 2.7e-06 27.1 3.9 3.3e-06 26.8 3.9 1.0 1 0 0 1 1 1 1 Lysine exporter LysO Lys_export PF03956.13 gi|242398562|ref|YP_002993986.1| - 1.1e-58 197.9 16.3 1.3e-58 197.7 16.3 1.0 1 0 0 1 1 1 1 Lysine exporter LysO Ribosomal_L44 PF00935.19 gi|242398563|ref|YP_002993987.1| - 1.9e-26 92.3 5.8 3.1e-26 91.7 5.8 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|242398563|ref|YP_002993987.1| - 0.00039 20.8 5.0 0.0018 18.6 2.2 2.3 2 0 0 2 2 2 1 Ribosomal protein L33 Zn-ribbon_8 PF09723.10 gi|242398563|ref|YP_002993987.1| - 0.0066 16.5 2.5 0.69 10.1 0.4 2.3 2 0 0 2 2 2 2 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|242398563|ref|YP_002993987.1| - 0.0067 16.3 2.1 2.1 8.3 0.1 2.3 2 0 0 2 2 2 2 Nudix N-terminal NOB1_Zn_bind PF08772.11 gi|242398563|ref|YP_002993987.1| - 0.02 15.0 1.8 0.088 13.0 0.3 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|242398563|ref|YP_002993987.1| - 0.028 14.4 0.6 0.2 11.7 0.6 1.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-H2C2_2 PF13465.6 gi|242398563|ref|YP_002993987.1| - 0.043 14.3 4.7 4.1 8.0 0.2 2.5 2 0 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|242398563|ref|YP_002993987.1| - 0.083 12.9 3.5 1.2 9.2 0.4 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-LITAF-like PF10601.9 gi|242398563|ref|YP_002993987.1| - 0.14 12.4 3.7 0.3 11.4 0.5 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|242398563|ref|YP_002993987.1| - 0.15 11.9 0.6 4.3 7.2 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ribbon_3 PF13248.6 gi|242398563|ref|YP_002993987.1| - 0.16 11.4 1.8 6 6.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|242398564|ref|YP_002993988.1| - 1.7e-24 85.3 0.9 1.9e-24 85.1 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-RanBP PF00641.18 gi|242398564|ref|YP_002993988.1| - 0.0018 17.6 1.2 0.1 12.0 0.1 2.1 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others TF_Zn_Ribbon PF08271.12 gi|242398564|ref|YP_002993988.1| - 0.0028 17.1 0.4 0.0036 16.8 0.4 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.19 gi|242398564|ref|YP_002993988.1| - 0.0061 16.6 0.1 0.0069 16.4 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_6 PF14599.6 gi|242398564|ref|YP_002993988.1| - 0.043 13.8 0.2 0.06 13.4 0.2 1.2 1 0 0 1 1 1 0 Zinc-ribbon Zn-ribbon_8 PF09723.10 gi|242398564|ref|YP_002993988.1| - 0.06 13.5 0.2 0.097 12.8 0.2 1.3 1 0 0 1 1 1 0 Zinc ribbon domain TackOD1 PF18551.1 gi|242398564|ref|YP_002993988.1| - 0.061 13.0 0.4 0.082 12.6 0.4 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-BED PF02892.15 gi|242398564|ref|YP_002993988.1| - 0.11 12.6 0.1 3.4 7.8 0.0 2.1 2 0 0 2 2 2 0 BED zinc finger TFIIS_C PF01096.18 gi|242398564|ref|YP_002993988.1| - 0.36 10.7 1.9 4.5 7.2 0.1 2.1 1 1 2 3 3 3 0 Transcription factor S-II (TFIIS) EIF_2_alpha PF07541.12 gi|242398565|ref|YP_002993989.1| - 3.4e-24 85.2 0.3 1e-23 83.6 0.1 1.8 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|242398565|ref|YP_002993989.1| - 7.3e-14 51.9 0.1 1.8e-13 50.6 0.1 1.7 1 0 0 1 1 1 1 S1 RNA binding domain Nop10p PF04135.12 gi|242398566|ref|YP_002993990.1| - 2.3e-26 91.6 4.0 2.5e-26 91.4 4.0 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|242398566|ref|YP_002993990.1| - 9.1e-05 21.9 0.7 0.00011 21.6 0.7 1.2 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|242398566|ref|YP_002993990.1| - 0.00053 18.0 0.2 0.00053 18.0 0.2 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.11 gi|242398566|ref|YP_002993990.1| - 0.0024 17.5 0.9 0.43 10.3 0.2 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|242398566|ref|YP_002993990.1| - 0.012 15.6 1.1 0.018 15.0 1.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C4_Topoisom PF01396.19 gi|242398566|ref|YP_002993990.1| - 0.02 14.7 4.2 1.3 8.9 0.3 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF35_N PF12172.8 gi|242398566|ref|YP_002993990.1| - 0.02 14.7 0.5 0.044 13.7 0.5 1.6 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-tcix PF14952.6 gi|242398566|ref|YP_002993990.1| - 0.021 14.4 0.8 0.021 14.4 0.8 2.5 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-nanos PF05741.13 gi|242398566|ref|YP_002993990.1| - 0.027 14.7 1.7 0.1 12.9 1.7 1.8 1 1 1 2 2 2 0 Nanos RNA binding domain DUF1272 PF06906.11 gi|242398566|ref|YP_002993990.1| - 0.029 14.4 1.1 0.036 14.2 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.6 gi|242398566|ref|YP_002993990.1| - 0.034 13.5 5.9 0.38 10.2 5.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain NRDD PF13597.6 gi|242398566|ref|YP_002993990.1| - 0.035 12.9 1.0 0.042 12.6 1.0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DNA_ligase_ZBD PF03119.16 gi|242398566|ref|YP_002993990.1| - 0.055 13.5 1.3 9.1 6.4 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.6 gi|242398566|ref|YP_002993990.1| - 0.087 12.8 2.5 2.8 7.9 0.2 2.4 2 1 0 2 2 2 0 Nudix N-terminal Lar_restr_allev PF14354.6 gi|242398566|ref|YP_002993990.1| - 0.1 13.0 6.2 1.9 8.9 0.3 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Ribosomal_L32p PF01783.23 gi|242398566|ref|YP_002993990.1| - 0.11 12.8 2.6 0.65 10.3 1.7 2.2 1 1 1 2 2 2 0 Ribosomal L32p protein family zf-ISL3 PF14690.6 gi|242398566|ref|YP_002993990.1| - 0.13 12.9 4.6 2.3 9.0 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CpXC PF14353.6 gi|242398566|ref|YP_002993990.1| - 0.22 11.6 4.3 1.4 9.0 0.2 2.1 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|242398566|ref|YP_002993990.1| - 0.26 11.4 5.8 1.3 9.2 0.6 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Cys_rich_CPXG PF14255.6 gi|242398566|ref|YP_002993990.1| - 0.27 11.2 2.6 5.2 7.1 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf_CopZ PF18423.1 gi|242398566|ref|YP_002993990.1| - 0.39 10.7 3.9 4.3 7.4 0.3 2.3 2 0 0 2 2 2 0 Zinc binding domain Zn_Tnp_IS1595 PF12760.7 gi|242398566|ref|YP_002993990.1| - 0.47 10.5 4.3 7.7 6.6 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|242398566|ref|YP_002993990.1| - 0.55 10.0 8.0 1.8 8.4 1.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|242398566|ref|YP_002993990.1| - 0.97 9.0 6.0 13 5.4 6.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Cys_rich_KTR PF14205.6 gi|242398566|ref|YP_002993990.1| - 1 9.2 6.3 1.2 9.0 0.2 2.4 2 1 1 3 3 2 0 Cysteine-rich KTR Zn-C2H2_12 PF18112.1 gi|242398566|ref|YP_002993990.1| - 1.5 9.4 7.8 3.8 8.0 0.5 2.3 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain YhfH PF14149.6 gi|242398566|ref|YP_002993990.1| - 1.6 8.8 9.0 12 6.0 5.9 2.2 1 1 1 2 2 2 0 YhfH-like protein Ogr_Delta PF04606.12 gi|242398566|ref|YP_002993990.1| - 1.7 8.7 4.9 9.3 6.3 0.4 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf_C2H2_10 PF18414.1 gi|242398566|ref|YP_002993990.1| - 2.5 7.7 7.8 5.1 6.7 1.9 2.4 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF1610 PF07754.11 gi|242398566|ref|YP_002993990.1| - 5.6 7.0 10.7 6.3 6.9 3.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) PAC2 PF09754.9 gi|242398567|ref|YP_002993991.1| - 2.6e-48 164.8 0.0 3.1e-48 164.6 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PHP_C PF13263.6 gi|242398568|ref|YP_002993992.1| - 1.2e-05 25.0 0.0 2.7e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|242398568|ref|YP_002993992.1| - 0.0031 17.8 0.1 0.0071 16.7 0.0 1.5 1 1 0 1 1 1 1 PHP domain TF_Zn_Ribbon PF08271.12 gi|242398568|ref|YP_002993992.1| - 0.0071 15.8 0.1 0.014 14.9 0.1 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HAUS4 PF14735.6 gi|242398568|ref|YP_002993992.1| - 0.014 15.1 0.3 0.031 14.0 0.1 1.6 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 4 zinc_ribbon_4 PF13717.6 gi|242398568|ref|YP_002993992.1| - 0.11 12.4 1.3 0.29 11.1 1.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain GalP_UDP_transf PF01087.22 gi|242398569|ref|YP_002993993.1| - 1.7e-25 90.5 0.4 1.8e-24 87.2 0.1 2.5 2 1 0 2 2 2 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|242398569|ref|YP_002993993.1| - 7.1e-18 64.9 0.0 1.1e-17 64.2 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.23 gi|242398569|ref|YP_002993993.1| - 2.9e-06 27.9 0.0 0.013 16.3 0.0 2.3 2 0 0 2 2 2 2 HIT domain DUF4921 PF16268.5 gi|242398569|ref|YP_002993993.1| - 8.2e-06 24.9 0.1 1.5e-05 24.0 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4921) DcpS_C PF11969.8 gi|242398569|ref|YP_002993993.1| - 6.8e-05 23.3 0.2 0.00046 20.6 0.0 2.0 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding DUF4931 PF16285.5 gi|242398569|ref|YP_002993993.1| - 0.0092 15.3 0.2 0.02 14.2 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4931) Glyco_hydro_1 PF00232.18 gi|242398570|ref|YP_002993994.1| - 2e-88 296.8 13.9 3.7e-87 292.6 13.9 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Glyco_hydro_cc PF11790.8 gi|242398570|ref|YP_002993994.1| - 0.018 14.6 1.7 0.055 13.0 0.8 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase catalytic core Glyco_hydro_10 PF00331.20 gi|242398570|ref|YP_002993994.1| - 0.023 13.9 0.5 0.48 9.5 0.0 2.4 3 0 0 3 3 3 0 Glycosyl hydrolase family 10 MFS_1 PF07690.16 gi|242398571|ref|YP_002993995.1| - 1.6e-56 191.8 24.9 3.1e-49 167.8 21.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|242398571|ref|YP_002993995.1| - 1.4e-09 37.3 21.3 2.8e-08 33.0 18.9 2.4 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|242398571|ref|YP_002993995.1| - 5.5e-05 22.2 22.3 0.0024 16.8 0.4 4.4 2 2 1 4 4 4 3 MFS_1 like family ATG22 PF11700.8 gi|242398571|ref|YP_002993995.1| - 0.019 13.6 20.8 0.45 9.1 10.5 3.2 1 1 3 4 4 4 0 Vacuole effluxer Atg22 like OATP PF03137.20 gi|242398571|ref|YP_002993995.1| - 0.25 9.6 24.6 0.093 11.0 1.7 3.8 3 2 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family E1-E2_ATPase PF00122.20 gi|242398571|ref|YP_002993995.1| - 9.2 5.7 9.2 1.2 8.7 0.3 2.9 2 1 0 2 2 2 0 E1-E2 ATPase Glyco_hydro_57 PF03065.15 gi|242398572|ref|YP_002993996.1| - 1.7e-44 152.4 0.0 3.3e-44 151.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|242398572|ref|YP_002993996.1| - 0.0038 17.1 0.0 0.0059 16.5 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase GHMP_kinases_N PF00288.26 gi|242398573|ref|YP_002993997.1| - 4.6e-15 55.6 2.0 2.5e-14 53.3 0.0 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|242398573|ref|YP_002993997.1| - 2.5e-14 52.5 0.2 7.1e-14 51.1 0.0 1.9 2 0 0 2 2 2 1 Galactokinase galactose-binding signature GHMP_kinases_C PF08544.13 gi|242398573|ref|YP_002993997.1| - 1.4e-13 51.0 0.1 2.6e-13 50.1 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal AIRS PF00586.24 gi|242398574|ref|YP_002993998.1| - 1.3e-15 57.8 0.0 2e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|242398574|ref|YP_002993998.1| - 7.5e-07 29.4 0.1 1e-06 29.0 0.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain EHN PF06441.12 gi|242398576|ref|YP_002994000.1| - 0.081 13.3 0.0 0.081 13.3 0.0 1.1 1 0 0 1 1 1 0 Epoxide hydrolase N terminus HTH_10 PF04967.12 gi|242398577|ref|YP_002994001.1| - 2.3e-22 78.6 0.1 3.5e-22 78.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|242398577|ref|YP_002994001.1| - 7.1e-08 31.9 0.0 1.5e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|242398577|ref|YP_002994001.1| - 1.1e-05 24.8 0.1 2.1e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|242398577|ref|YP_002994001.1| - 0.00025 20.8 0.0 0.00062 19.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|242398577|ref|YP_002994001.1| - 0.00052 19.8 0.0 0.00081 19.2 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|242398577|ref|YP_002994001.1| - 0.00094 18.8 0.1 0.0022 17.6 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|242398577|ref|YP_002994001.1| - 0.001 18.9 0.0 0.0022 17.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Mga PF08280.11 gi|242398577|ref|YP_002994001.1| - 0.0026 17.7 0.0 0.0057 16.7 0.0 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain GerE PF00196.19 gi|242398577|ref|YP_002994001.1| - 0.0028 17.2 0.0 0.0051 16.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 gi|242398577|ref|YP_002994001.1| - 0.0076 16.2 0.1 0.022 14.7 0.0 1.8 2 0 0 2 2 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|242398577|ref|YP_002994001.1| - 0.0081 16.1 0.1 0.016 15.2 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_17 PF12728.7 gi|242398577|ref|YP_002994001.1| - 0.0086 16.2 0.0 0.025 14.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|242398577|ref|YP_002994001.1| - 0.0094 16.1 0.0 0.027 14.7 0.0 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|242398577|ref|YP_002994001.1| - 0.025 14.4 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.10 gi|242398577|ref|YP_002994001.1| - 0.026 14.3 0.0 0.054 13.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|242398577|ref|YP_002994001.1| - 0.034 13.9 0.5 0.11 12.3 0.5 1.9 1 1 0 1 1 1 0 LexA DNA binding domain Sigma70_r3 PF04539.16 gi|242398577|ref|YP_002994001.1| - 0.041 14.0 0.0 0.091 12.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_28 PF13518.6 gi|242398577|ref|YP_002994001.1| - 0.055 13.6 0.0 0.094 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|242398577|ref|YP_002994001.1| - 0.074 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_40 PF14493.6 gi|242398577|ref|YP_002994001.1| - 0.12 12.8 0.4 0.36 11.3 0.1 1.9 3 0 0 3 3 2 0 Helix-turn-helix domain MarR PF01047.22 gi|242398577|ref|YP_002994001.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 MarR family RHH_4 PF13467.6 gi|242398578|ref|YP_002994002.1| - 0.00034 20.4 0.3 0.00071 19.4 0.1 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|242398578|ref|YP_002994002.1| - 0.036 14.0 6.9 0.041 13.8 1.1 2.6 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family MetOD2 PF18548.1 gi|242398578|ref|YP_002994002.1| - 0.05 13.7 0.5 0.065 13.3 0.4 1.3 1 1 0 1 1 1 0 Metanogen output domain 2 PIN PF01850.21 gi|242398579|ref|YP_002994003.1| - 1.4e-10 41.8 1.5 2e-10 41.2 1.5 1.3 1 1 0 1 1 1 1 PIN domain PPR_2 PF13041.6 gi|242398579|ref|YP_002994003.1| - 0.052 13.7 0.0 0.094 12.9 0.0 1.5 1 0 0 1 1 1 0 PPR repeat family Arm_3 PF16186.5 gi|242398579|ref|YP_002994003.1| - 0.21 11.2 4.2 4.8 6.8 0.1 2.7 2 1 1 3 3 3 0 Atypical Arm repeat ABC_tran PF00005.27 gi|242398580|ref|YP_002994004.1| - 9.9e-27 94.1 0.0 1.6e-26 93.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242398580|ref|YP_002994004.1| - 3.2e-14 53.4 0.3 3.3e-10 40.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|242398580|ref|YP_002994004.1| - 9e-05 23.1 0.2 0.00031 21.3 0.0 1.8 2 1 0 2 2 2 1 AAA domain DUF4162 PF13732.6 gi|242398580|ref|YP_002994004.1| - 9.8e-05 23.0 1.3 0.0013 19.5 0.6 2.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|242398580|ref|YP_002994004.1| - 0.00026 20.8 0.2 0.2 11.3 0.6 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|242398580|ref|YP_002994004.1| - 0.0016 18.9 0.3 0.0091 16.4 0.3 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|242398580|ref|YP_002994004.1| - 0.02 14.6 0.1 0.061 13.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain dNK PF01712.19 gi|242398580|ref|YP_002994004.1| - 0.023 14.6 0.1 0.037 13.9 0.1 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase SRP54 PF00448.22 gi|242398580|ref|YP_002994004.1| - 0.03 14.0 0.1 0.052 13.2 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|242398580|ref|YP_002994004.1| - 0.039 13.9 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|242398580|ref|YP_002994004.1| - 0.048 13.6 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Thymidylate_kin PF02223.17 gi|242398580|ref|YP_002994004.1| - 0.069 12.8 0.2 0.8 9.3 0.1 2.4 2 0 0 2 2 2 0 Thymidylate kinase Zeta_toxin PF06414.12 gi|242398580|ref|YP_002994004.1| - 0.12 11.6 0.0 2.7 7.2 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_13 PF13166.6 gi|242398580|ref|YP_002994004.1| - 0.17 10.5 0.0 3.2 6.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC2_membrane_3 PF12698.7 gi|242398581|ref|YP_002994005.1| - 2e-05 23.9 16.4 2e-05 23.9 16.4 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|242398581|ref|YP_002994005.1| - 0.03 14.3 10.6 0.071 13.1 10.6 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2721 PF11026.8 gi|242398581|ref|YP_002994005.1| - 0.045 13.7 1.0 0.15 11.9 1.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) ABC2_membrane_3 PF12698.7 gi|242398582|ref|YP_002994006.1| - 1.3e-07 31.1 16.8 1.3e-07 31.1 16.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|242398582|ref|YP_002994006.1| - 3.4e-05 23.9 16.1 0.00011 22.2 15.9 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|242398582|ref|YP_002994006.1| - 0.093 12.0 18.2 0.073 12.3 12.3 2.2 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF3290 PF11694.8 gi|242398582|ref|YP_002994006.1| - 0.31 11.0 2.5 0.39 10.7 1.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) DUF104 PF01954.16 gi|242398583|ref|YP_002994007.1| - 1.8e-15 57.1 1.6 1.8e-15 57.1 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 gi|242398584|ref|YP_002994008.1| - 0.00029 21.3 0.2 0.00034 21.1 0.2 1.1 1 0 0 1 1 1 1 PIN domain SRP_TPR_like PF17004.5 gi|242398584|ref|YP_002994008.1| - 0.015 15.3 1.5 0.053 13.5 1.5 1.7 1 1 0 1 1 1 0 Putative TPR-like repeat PIN PF01850.21 gi|242398585|ref|YP_002994009.1| - 1.3e-10 41.8 0.0 1.4e-10 41.7 0.0 1.0 1 0 0 1 1 1 1 PIN domain Radical_SAM PF04055.21 gi|242398586|ref|YP_002994010.1| - 2.1e-22 80.3 0.7 3.8e-21 76.2 0.1 2.7 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|242398586|ref|YP_002994010.1| - 1e-07 32.3 0.1 2.3e-07 31.2 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DiS_P_DiS PF06750.13 gi|242398586|ref|YP_002994010.1| - 0.0049 17.0 0.2 0.0049 17.0 0.2 1.9 2 0 0 2 2 2 1 Bacterial Peptidase A24 N-terminal domain ADK_lid PF05191.14 gi|242398586|ref|YP_002994010.1| - 0.0083 16.1 0.4 1.8 8.6 0.0 2.6 2 0 0 2 2 2 1 Adenylate kinase, active site lid zf-C4_Topoisom PF01396.19 gi|242398586|ref|YP_002994010.1| - 0.026 14.3 1.5 0.41 10.5 0.1 2.6 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 gi|242398586|ref|YP_002994010.1| - 0.03 14.3 2.7 0.037 14.1 0.1 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf_C2H2_13 PF18508.1 gi|242398586|ref|YP_002994010.1| - 0.039 13.6 3.6 0.59 9.8 0.3 2.7 2 0 0 2 2 2 0 Zinc finger domain Fer4_14 PF13394.6 gi|242398586|ref|YP_002994010.1| - 0.22 11.7 0.1 0.22 11.7 0.1 1.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain zf-ribbon_3 PF13248.6 gi|242398586|ref|YP_002994010.1| - 0.22 11.0 0.2 0.22 11.0 0.2 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|242398586|ref|YP_002994010.1| - 4.5 7.1 15.2 0.34 10.7 1.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-dskA_traR PF01258.17 gi|242398586|ref|YP_002994010.1| - 4.7 7.2 11.9 1.7 8.7 0.7 3.2 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger FlgT_N PF16548.5 gi|242398587|ref|YP_002994011.1| - 0.0014 19.2 0.1 0.041 14.5 0.0 2.2 2 0 0 2 2 2 1 Flagellar assembly protein T, N-terminal domain Lipase_GDSL_3 PF14606.6 gi|242398587|ref|YP_002994011.1| - 0.044 13.9 2.0 1.9 8.6 0.2 2.4 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family RraB PF06877.11 gi|242398587|ref|YP_002994011.1| - 0.17 12.6 1.1 0.64 10.8 0.1 2.1 2 0 0 2 2 2 0 Regulator of ribonuclease activity B S_layer_C PF05124.12 gi|242398588|ref|YP_002994012.1| - 7e-09 36.0 0.1 7e-09 36.0 0.1 2.0 3 0 0 3 3 3 1 S-layer like family, C-terminal region Radical_SAM PF04055.21 gi|242398589|ref|YP_002994013.1| - 2.5e-26 93.1 0.1 1.8e-25 90.3 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.7 gi|242398589|ref|YP_002994013.1| - 4.7e-05 23.6 0.0 0.00043 20.5 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif Rubrerythrin PF02915.17 gi|242398590|ref|YP_002994014.1| - 4.8e-14 52.9 4.9 4.8e-14 52.9 4.9 1.9 1 1 1 2 2 2 1 Rubrerythrin DUF1877 PF08974.10 gi|242398590|ref|YP_002994014.1| - 0.00066 19.8 1.1 0.04 14.0 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1877) Coat_F PF07875.12 gi|242398590|ref|YP_002994014.1| - 0.0061 16.8 0.4 2.8 8.2 0.0 2.6 2 1 0 2 2 2 2 Coat F domain Ferritin_2 PF13668.6 gi|242398590|ref|YP_002994014.1| - 0.018 15.2 1.9 1.3 9.3 0.4 2.1 2 0 0 2 2 2 0 Ferritin-like domain DUF3231 PF11553.8 gi|242398590|ref|YP_002994014.1| - 0.021 14.5 1.8 0.06 13.0 0.1 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3231) Ndc80_HEC PF03801.13 gi|242398590|ref|YP_002994014.1| - 0.031 13.9 0.0 0.066 12.8 0.0 1.6 2 0 0 2 2 2 0 HEC/Ndc80p family DUF2202 PF09968.9 gi|242398590|ref|YP_002994014.1| - 0.095 12.5 0.4 0.095 12.5 0.4 2.2 2 1 1 3 3 3 0 Uncharacterized protein domain (DUF2202) SapB_1 PF05184.15 gi|242398590|ref|YP_002994014.1| - 0.27 11.3 1.8 0.63 10.1 0.7 2.3 2 0 0 2 2 2 0 Saposin-like type B, region 1 Rpn9_C PF18261.1 gi|242398590|ref|YP_002994014.1| - 0.59 9.8 0.1 0.59 9.8 0.1 2.9 3 1 0 3 3 3 0 Rpn9 C-terminal helix HSR PF03172.13 gi|242398590|ref|YP_002994014.1| - 1.6 8.9 5.0 11 6.3 0.2 2.9 1 1 2 3 3 3 0 HSR domain Rubrerythrin PF02915.17 gi|242398591|ref|YP_002994015.1| - 3.3e-09 37.3 9.9 4.1e-09 36.9 9.9 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF5638 PF18688.1 gi|242398591|ref|YP_002994015.1| - 0.031 14.6 0.6 0.031 14.6 0.6 2.0 2 1 0 2 2 2 0 Family of unknown function (DUF5638) Ferritin PF00210.24 gi|242398591|ref|YP_002994015.1| - 0.034 14.1 5.7 0.11 12.4 5.6 2.0 1 1 0 1 1 1 0 Ferritin-like domain DNA_gyraseB PF00204.25 gi|242398591|ref|YP_002994015.1| - 0.095 12.2 0.3 0.26 10.8 0.2 1.8 1 1 0 1 1 1 0 DNA gyrase B DUF2383 PF09537.10 gi|242398591|ref|YP_002994015.1| - 0.16 12.3 1.8 0.35 11.2 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) DUF4535 PF15054.6 gi|242398591|ref|YP_002994015.1| - 0.48 10.2 1.9 1.1 9.0 0.1 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4535) W2 PF02020.18 gi|242398591|ref|YP_002994015.1| - 0.57 10.4 7.3 6.2 7.0 7.3 2.3 1 1 0 1 1 1 0 eIF4-gamma/eIF5/eIF2-epsilon RrnaAD PF00398.20 gi|242398592|ref|YP_002994016.1| - 5.8e-57 192.8 0.4 6.8e-57 192.5 0.4 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|242398592|ref|YP_002994016.1| - 9.2e-08 32.7 0.0 2e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|242398592|ref|YP_002994016.1| - 6.3e-06 26.8 0.0 1.6e-05 25.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|242398592|ref|YP_002994016.1| - 3.7e-05 23.3 0.0 8.9e-05 22.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|242398592|ref|YP_002994016.1| - 0.0015 18.3 0.0 0.0025 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|242398592|ref|YP_002994016.1| - 0.0025 17.0 0.1 0.016 14.3 0.0 2.1 2 0 0 2 2 2 1 DREV methyltransferase Methyltransf_23 PF13489.6 gi|242398592|ref|YP_002994016.1| - 0.026 14.4 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PRMT5 PF05185.16 gi|242398592|ref|YP_002994016.1| - 0.043 13.6 0.1 0.086 12.7 0.1 1.4 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_4 PF02390.17 gi|242398592|ref|YP_002994016.1| - 0.077 12.5 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.19 gi|242398592|ref|YP_002994016.1| - 0.08 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.18 gi|242398592|ref|YP_002994016.1| - 0.13 11.9 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF655 PF04919.12 gi|242398593|ref|YP_002994017.1| - 2.5e-68 229.6 0.6 3.1e-68 229.3 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|242398593|ref|YP_002994017.1| - 7.8e-05 22.9 0.0 0.00015 21.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|242398593|ref|YP_002994017.1| - 0.0032 17.7 0.0 0.0072 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif UBA_3 PF09288.10 gi|242398593|ref|YP_002994017.1| - 0.079 12.8 0.2 0.23 11.3 0.1 1.8 2 0 0 2 2 2 0 Fungal ubiquitin-associated domain RNA_pol_Rpb4 PF03874.16 gi|242398594|ref|YP_002994018.1| - 5.8e-07 29.9 2.7 9.1e-07 29.2 2.7 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb4 Ribosomal_L21e PF01157.18 gi|242398595|ref|YP_002994019.1| - 6.3e-33 112.6 0.7 7.1e-33 112.5 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|242398596|ref|YP_002994020.1| - 9.2e-13 48.5 0.5 9.2e-13 48.5 0.5 2.8 3 0 0 3 3 3 1 THUMP domain P-II PF00543.22 gi|242398596|ref|YP_002994020.1| - 0.11 13.1 0.3 0.39 11.3 0.1 2.0 2 0 0 2 2 2 0 Nitrogen regulatory protein P-II HTH_5 PF01022.20 gi|242398597|ref|YP_002994021.1| - 0.0042 16.9 0.4 0.0072 16.2 0.4 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DZR PF12773.7 gi|242398597|ref|YP_002994021.1| - 0.0097 15.9 0.2 0.014 15.4 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon ADK_lid PF05191.14 gi|242398597|ref|YP_002994021.1| - 0.013 15.5 0.7 0.022 14.7 0.7 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid Type2_restr_D3 PF16902.5 gi|242398597|ref|YP_002994021.1| - 0.022 14.7 0.8 0.027 14.4 0.8 1.2 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain UPF0122 PF04297.14 gi|242398597|ref|YP_002994021.1| - 0.038 14.2 0.1 0.045 14.0 0.1 1.1 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HypA PF01155.19 gi|242398597|ref|YP_002994021.1| - 0.043 13.8 1.1 0.07 13.1 1.0 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|242398597|ref|YP_002994021.1| - 0.057 13.2 4.5 0.19 11.5 4.5 1.8 1 1 0 1 1 1 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|242398597|ref|YP_002994021.1| - 0.085 13.0 2.2 0.16 12.1 2.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|242398597|ref|YP_002994021.1| - 0.097 12.6 4.4 2.5 8.1 0.5 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HalOD2 PF18547.1 gi|242398597|ref|YP_002994021.1| - 0.96 9.4 2.8 5.8 6.9 0.4 2.2 2 0 0 2 2 2 0 Halobacterial output domain 2 PhnA_Zn_Ribbon PF08274.12 gi|242398597|ref|YP_002994021.1| - 1.1 9.2 4.2 0.52 10.3 0.6 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-C2H2_3 PF13878.6 gi|242398597|ref|YP_002994021.1| - 1.3 8.9 3.0 2.7 7.9 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Asparaginase PF00710.20 gi|242398598|ref|YP_002994022.1| - 3.2e-60 203.0 0.0 5.6e-60 202.2 0.0 1.4 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|242398598|ref|YP_002994022.1| - 2.9e-37 127.4 0.0 5.6e-37 126.4 0.0 1.5 1 0 0 1 1 1 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|242398598|ref|YP_002994022.1| - 1.9e-18 65.5 1.3 4.3e-18 64.4 1.3 1.6 1 0 0 1 1 1 1 GatD N-terminal domain MeMO_Hyd_G PF02964.16 gi|242398598|ref|YP_002994022.1| - 0.047 13.7 0.1 0.09 12.8 0.1 1.4 1 0 0 1 1 1 0 Methane monooxygenase, hydrolase gamma chain DUF1460 PF07313.12 gi|242398598|ref|YP_002994022.1| - 0.08 12.3 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1460) GatB_N PF02934.15 gi|242398599|ref|YP_002994023.1| - 4.3e-65 219.8 0.0 8.5e-65 218.9 0.0 1.6 1 1 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|242398599|ref|YP_002994023.1| - 2.8e-26 92.2 8.5 2.8e-26 92.2 8.5 2.6 3 0 0 3 3 3 1 GatB domain GAD PF02938.14 gi|242398599|ref|YP_002994023.1| - 9.8e-17 61.0 2.2 2.2e-16 59.8 0.2 2.7 2 1 1 3 3 3 1 GAD domain YqeY PF09424.10 gi|242398599|ref|YP_002994023.1| - 6.9e-09 35.9 1.3 2.7e-08 34.0 1.3 2.2 1 0 0 1 1 1 1 Yqey-like protein DUF4473 PF14747.6 gi|242398599|ref|YP_002994023.1| - 0.0064 17.0 0.8 6.8 7.3 0.0 3.6 3 1 0 3 3 3 1 Domain of unknown function (DUF4473) DUF1133 PF06576.11 gi|242398599|ref|YP_002994023.1| - 0.13 11.6 2.9 0.099 12.0 0.5 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1133) DUF1967 PF09269.11 gi|242398599|ref|YP_002994023.1| - 0.14 12.1 3.1 1.3 9.0 0.5 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF1967) RNase_Zc3h12a PF11977.8 gi|242398599|ref|YP_002994023.1| - 0.14 11.9 0.3 5.3 6.8 0.0 2.3 2 0 0 2 2 2 0 Zc3h12a-like Ribonuclease NYN domain NAD_Gly3P_dh_N PF01210.23 gi|242398599|ref|YP_002994023.1| - 0.2 11.6 1.8 1.4 8.8 0.9 2.7 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KicB PF03882.14 gi|242398599|ref|YP_002994023.1| - 0.3 11.3 2.5 29 4.9 0.0 3.7 4 0 0 4 4 4 0 MukF winged-helix domain ABC2_membrane_2 PF12679.7 gi|242398600|ref|YP_002994024.1| - 0.074 12.3 2.7 0.11 11.8 2.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein YtpI PF14007.6 gi|242398600|ref|YP_002994024.1| - 0.98 9.6 5.4 3.5 7.8 0.2 2.6 2 1 1 3 3 3 0 YtpI-like protein DUF2070 PF09843.9 gi|242398601|ref|YP_002994025.1| - 0.054 11.8 0.5 0.078 11.3 0.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) HMG-CoA_red PF00368.18 gi|242398602|ref|YP_002994026.1| - 1.4e-138 461.9 2.0 1.6e-138 461.7 2.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CbiA PF01656.23 gi|242398603|ref|YP_002994027.1| - 1.4e-18 67.2 0.0 2.3e-18 66.5 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|242398603|ref|YP_002994027.1| - 3.6e-13 49.8 0.0 7.1e-13 48.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|242398603|ref|YP_002994027.1| - 1.2e-08 34.7 0.0 4.6e-07 29.6 0.0 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|242398603|ref|YP_002994027.1| - 2.1e-07 30.7 0.0 2.4e-05 23.9 0.0 2.6 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|242398603|ref|YP_002994027.1| - 5.7e-06 26.0 0.3 0.068 12.6 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|242398603|ref|YP_002994027.1| - 1.7e-05 24.2 0.1 2.8e-05 23.5 0.1 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase SRP54 PF00448.22 gi|242398603|ref|YP_002994027.1| - 0.00032 20.4 0.1 0.00055 19.6 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain GTP_EFTU PF00009.27 gi|242398603|ref|YP_002994027.1| - 0.00032 20.3 0.2 0.38 10.3 0.1 2.3 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain KTI12 PF08433.10 gi|242398603|ref|YP_002994027.1| - 0.0041 16.6 0.0 0.0062 16.0 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_26 PF13500.6 gi|242398603|ref|YP_002994027.1| - 0.0099 15.7 1.4 0.045 13.6 0.1 2.1 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|242398603|ref|YP_002994027.1| - 0.016 15.1 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|242398603|ref|YP_002994027.1| - 0.02 14.2 0.0 0.098 11.9 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin PRK PF00485.18 gi|242398603|ref|YP_002994027.1| - 0.024 14.4 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF1611 PF07755.11 gi|242398603|ref|YP_002994027.1| - 0.026 13.8 0.4 0.084 12.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain T2SSE PF00437.20 gi|242398603|ref|YP_002994027.1| - 0.22 10.6 0.2 0.43 9.6 0.2 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein TRAM PF01938.20 gi|242398604|ref|YP_002994028.1| - 4.8e-15 55.3 2.3 6e-15 55.0 2.3 1.1 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|242398604|ref|YP_002994028.1| - 0.0085 15.8 0.6 0.047 13.4 0.2 2.2 1 1 1 2 2 2 1 Bacterial transferase hexapeptide (six repeats) DUF5035 PF16438.5 gi|242398604|ref|YP_002994028.1| - 0.11 12.4 0.1 7.2 6.5 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF5035) Sec-ASP3 PF15432.6 gi|242398604|ref|YP_002994028.1| - 0.12 12.5 0.0 0.14 12.3 0.0 1.3 1 1 0 1 1 1 0 Accessory Sec secretory system ASP3 ADH_N PF08240.12 gi|242398605|ref|YP_002994029.1| - 1.2e-36 124.9 2.5 1.6e-36 124.5 1.6 1.6 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|242398605|ref|YP_002994029.1| - 2.1e-31 108.6 0.0 4.7e-31 107.5 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|242398605|ref|YP_002994029.1| - 3.1e-10 39.9 0.1 5e-10 39.2 0.1 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|242398605|ref|YP_002994029.1| - 1.5e-09 39.0 0.0 2.9e-09 38.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|242398605|ref|YP_002994029.1| - 0.011 15.6 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase AlaDh_PNT_C PF01262.21 gi|242398605|ref|YP_002994029.1| - 0.071 12.4 2.1 0.16 11.2 2.1 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UPF0146 PF03686.13 gi|242398605|ref|YP_002994029.1| - 0.097 12.6 0.4 1.3 8.9 0.0 2.5 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0146) tRNA-synt_2d PF01409.20 gi|242398606|ref|YP_002994030.1| - 1.2e-82 277.1 0.0 1.7e-82 276.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|242398606|ref|YP_002994030.1| - 5.6e-05 22.7 0.0 0.064 12.7 0.0 2.4 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|242398606|ref|YP_002994030.1| - 0.0013 17.9 0.0 0.38 9.8 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) TFIIE_alpha PF02002.17 gi|242398606|ref|YP_002994030.1| - 0.017 15.0 10.6 2.3 8.1 5.5 3.5 1 1 0 2 2 2 0 TFIIE alpha subunit TrmB PF01978.19 gi|242398606|ref|YP_002994030.1| - 0.088 12.7 5.0 0.82 9.6 0.3 3.8 4 0 0 4 4 4 0 Sugar-specific transcriptional regulator TrmB DUF2582 PF10771.9 gi|242398606|ref|YP_002994030.1| - 0.66 10.2 4.1 0.92 9.7 0.1 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix domain (DUF2582) tRNA_synthFbeta PF17759.1 gi|242398607|ref|YP_002994031.1| - 5.8e-47 159.9 0.1 1.1e-46 159.0 0.0 1.5 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|242398607|ref|YP_002994031.1| - 2.4e-14 53.4 0.8 2.9e-13 49.9 0.4 2.6 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|242398607|ref|YP_002994031.1| - 7.6e-14 51.8 0.0 1.4e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|242398607|ref|YP_002994031.1| - 2.2e-08 34.2 0.3 1.7e-06 28.1 0.0 3.5 3 1 0 3 3 3 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|242398607|ref|YP_002994031.1| - 5.4e-05 22.8 0.0 0.00016 21.2 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) PseudoU_synth_1 PF01416.20 gi|242398608|ref|YP_002994032.1| - 5.3e-23 81.5 0.0 6.6e-17 61.9 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase ResIII PF04851.15 gi|242398609|ref|YP_002994033.1| - 1.2e-17 64.4 0.0 5.8e-17 62.2 0.0 2.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|242398609|ref|YP_002994033.1| - 1e-12 48.4 0.1 4.2e-12 46.4 0.1 2.1 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|242398609|ref|YP_002994033.1| - 2.4e-05 24.2 0.3 0.00022 21.0 0.1 2.7 2 1 0 2 2 2 1 DEAD/DEAH box helicase SWI2_SNF2 PF18766.1 gi|242398609|ref|YP_002994033.1| - 7.7e-05 22.5 0.0 0.00031 20.5 0.0 2.1 2 1 0 2 2 2 1 SWI2/SNF2 ATPase ERCC3_RAD25_C PF16203.5 gi|242398609|ref|YP_002994033.1| - 0.011 14.9 0.8 0.019 14.1 0.1 1.7 2 0 0 2 2 2 0 ERCC3/RAD25/XPB C-terminal helicase DUF2075 PF09848.9 gi|242398609|ref|YP_002994033.1| - 0.012 14.9 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) UbiD PF01977.16 gi|242398610|ref|YP_002994034.1| - 1.1e-94 317.7 0.2 1.3e-94 317.3 0.2 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase P5CR_dimer PF14748.6 gi|242398611|ref|YP_002994035.1| - 1.2e-36 125.0 0.2 2.5e-36 124.1 0.2 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|242398611|ref|YP_002994035.1| - 7.8e-22 77.7 2.0 1.7e-21 76.6 2.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|242398611|ref|YP_002994035.1| - 2.3e-12 47.4 0.4 9.4e-12 45.4 0.3 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|242398611|ref|YP_002994035.1| - 4.1e-11 42.7 0.3 6.1e-11 42.2 0.3 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|242398611|ref|YP_002994035.1| - 5.9e-10 39.0 0.8 2e-09 37.3 0.8 1.9 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|242398611|ref|YP_002994035.1| - 2.3e-08 34.1 4.3 6.5e-06 26.2 4.3 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|242398611|ref|YP_002994035.1| - 1.1e-07 31.3 0.1 1.9e-07 30.6 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|242398611|ref|YP_002994035.1| - 5.4e-07 29.8 0.4 9e-07 29.1 0.4 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus PDH PF02153.17 gi|242398611|ref|YP_002994035.1| - 4.9e-06 25.7 0.1 9.4e-06 24.8 0.1 1.4 1 0 0 1 1 1 1 Prephenate dehydrogenase Shikimate_DH PF01488.20 gi|242398611|ref|YP_002994035.1| - 1.6e-05 24.9 0.5 3.8e-05 23.8 0.5 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|242398611|ref|YP_002994035.1| - 3.2e-05 23.9 0.5 3.2e-05 23.9 0.5 2.5 2 1 1 3 3 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CoA_binding_2 PF13380.6 gi|242398611|ref|YP_002994035.1| - 6.7e-05 23.4 0.6 0.00012 22.5 0.6 1.5 1 0 0 1 1 1 1 CoA binding domain UDPG_MGDP_dh_N PF03721.14 gi|242398611|ref|YP_002994035.1| - 8.6e-05 22.2 0.8 0.0016 18.0 0.1 2.4 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.21 gi|242398611|ref|YP_002994035.1| - 0.00013 21.5 0.0 0.00019 21.0 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|242398611|ref|YP_002994035.1| - 0.00017 21.6 0.4 0.00033 20.6 0.4 1.6 1 0 0 1 1 1 1 NAD(P)H-binding TrkA_N PF02254.18 gi|242398611|ref|YP_002994035.1| - 0.00047 20.4 1.3 0.0025 18.0 0.9 2.2 1 1 1 2 2 2 1 TrkA-N domain Rossmann-like PF10727.9 gi|242398611|ref|YP_002994035.1| - 0.0007 19.5 1.4 0.0016 18.3 1.4 1.6 1 1 0 1 1 1 1 Rossmann-like domain adh_short PF00106.25 gi|242398611|ref|YP_002994035.1| - 0.00076 19.0 4.7 0.012 15.1 2.5 2.6 2 1 1 3 3 3 1 short chain dehydrogenase UDPG_MGDP_dh_C PF03720.15 gi|242398611|ref|YP_002994035.1| - 0.00083 19.7 0.2 0.0018 18.7 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain QRPTase_C PF01729.19 gi|242398611|ref|YP_002994035.1| - 0.0033 17.2 0.3 0.13 12.1 0.1 2.3 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain NmrA PF05368.13 gi|242398611|ref|YP_002994035.1| - 0.004 16.8 0.6 0.0058 16.2 0.6 1.5 1 1 0 1 1 1 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|242398611|ref|YP_002994035.1| - 0.0044 17.3 1.0 0.01 16.1 1.0 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain POR PF01558.18 gi|242398611|ref|YP_002994035.1| - 0.0049 17.0 0.1 0.0083 16.2 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase ThiF PF00899.21 gi|242398611|ref|YP_002994035.1| - 0.007 15.8 1.7 0.028 13.8 1.7 1.9 1 1 1 2 2 2 1 ThiF family GDP_Man_Dehyd PF16363.5 gi|242398611|ref|YP_002994035.1| - 0.0078 15.6 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Pyr_redox_2 PF07992.14 gi|242398611|ref|YP_002994035.1| - 0.008 15.4 1.6 0.013 14.8 1.2 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|242398611|ref|YP_002994035.1| - 0.011 16.3 3.7 0.015 15.9 1.3 2.3 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|242398611|ref|YP_002994035.1| - 0.015 14.9 0.6 0.033 13.8 0.3 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|242398611|ref|YP_002994035.1| - 0.016 15.4 0.6 0.046 14.0 0.6 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain UPF0146 PF03686.13 gi|242398611|ref|YP_002994035.1| - 0.016 15.1 1.1 0.032 14.1 0.9 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0146) Semialdhyde_dh PF01118.24 gi|242398611|ref|YP_002994035.1| - 0.019 15.4 1.2 0.055 13.9 0.9 1.9 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|242398611|ref|YP_002994035.1| - 0.02 15.5 0.2 0.043 14.5 0.2 1.6 1 0 0 1 1 1 0 PglD N-terminal domain adh_short_C2 PF13561.6 gi|242398611|ref|YP_002994035.1| - 0.022 14.3 0.9 0.069 12.7 0.8 1.8 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase CoA_binding PF02629.19 gi|242398611|ref|YP_002994035.1| - 0.025 15.2 1.7 0.066 13.9 1.2 2.1 2 0 0 2 2 1 0 CoA binding domain GFO_IDH_MocA PF01408.22 gi|242398611|ref|YP_002994035.1| - 0.03 15.1 1.2 0.037 14.8 0.2 1.7 2 0 0 2 2 1 0 Oxidoreductase family, NAD-binding Rossmann fold RmlD_sub_bind PF04321.17 gi|242398611|ref|YP_002994035.1| - 0.031 13.4 0.0 0.048 12.8 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain NAD_binding_7 PF13241.6 gi|242398611|ref|YP_002994035.1| - 0.041 14.3 1.1 0.089 13.2 1.1 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Amino_oxidase PF01593.24 gi|242398611|ref|YP_002994035.1| - 0.089 12.1 0.1 0.19 11.0 0.1 1.5 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase UPF0180 PF03698.13 gi|242398611|ref|YP_002994035.1| - 0.094 12.9 0.2 0.39 10.9 0.2 2.1 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) AlaDh_PNT_C PF01262.21 gi|242398611|ref|YP_002994035.1| - 0.1 11.9 1.3 0.19 11.0 1.3 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 gi|242398611|ref|YP_002994035.1| - 0.1 13.1 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain GIDA PF01134.22 gi|242398611|ref|YP_002994035.1| - 0.12 11.4 1.3 0.17 10.9 1.3 1.5 1 1 0 1 1 1 0 Glucose inhibited division protein A Ldh_1_N PF00056.23 gi|242398611|ref|YP_002994035.1| - 0.14 12.2 1.4 0.53 10.4 1.4 1.9 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain SHMT PF00464.19 gi|242398612|ref|YP_002994036.1| - 1e-77 261.4 0.0 1.3e-77 261.1 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|242398612|ref|YP_002994036.1| - 4.2e-11 42.6 0.0 6.7e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|242398612|ref|YP_002994036.1| - 4.7e-08 32.4 0.2 7.1e-08 31.8 0.2 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|242398612|ref|YP_002994036.1| - 1.5e-07 31.0 0.0 3.3e-07 29.9 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|242398612|ref|YP_002994036.1| - 0.00086 18.4 0.0 0.0037 16.3 0.0 1.8 2 0 0 2 2 2 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|242398612|ref|YP_002994036.1| - 0.00086 17.9 0.0 0.0038 15.8 0.0 1.9 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|242398612|ref|YP_002994036.1| - 0.015 14.6 0.1 0.022 14.1 0.1 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Lactamase_B_3 PF13483.6 gi|242398612|ref|YP_002994036.1| - 0.034 14.1 0.0 0.08 12.8 0.0 1.6 2 0 0 2 2 2 0 Beta-lactamase superfamily domain CheD PF03975.13 gi|242398612|ref|YP_002994036.1| - 0.048 13.8 0.1 0.12 12.5 0.1 1.6 1 0 0 1 1 1 0 CheD chemotactic sensory transduction SIR2 PF02146.17 gi|242398613|ref|YP_002994037.1| - 4e-58 196.2 0.0 4.8e-58 196.0 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.10 gi|242398613|ref|YP_002994037.1| - 0.0044 17.1 0.4 0.012 15.7 0.4 1.6 1 0 0 1 1 1 1 Zinc ribbon domain TPP_enzyme_M PF00205.22 gi|242398613|ref|YP_002994037.1| - 0.0054 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain A1_Propeptide PF07966.12 gi|242398613|ref|YP_002994037.1| - 0.063 13.2 2.4 2.4 8.1 1.3 2.5 2 0 0 2 2 2 0 A1 Propeptide DUF3783 PF12646.7 gi|242398614|ref|YP_002994038.1| - 3.7e-18 65.2 0.3 5e-17 61.6 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF3783) SPX PF03105.19 gi|242398614|ref|YP_002994038.1| - 0.027 14.4 0.0 0.028 14.4 0.0 1.1 1 0 0 1 1 1 0 SPX domain SepRS_C PF18006.1 gi|242398614|ref|YP_002994038.1| - 0.11 12.6 0.9 9.1 6.5 0.1 3.1 3 0 0 3 3 3 0 O-phosphoseryl-tRNA synthetase C-terminal domain HAD_2 PF13419.6 gi|242398615|ref|YP_002994039.1| - 9.5e-33 113.8 0.0 1.5e-32 113.2 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242398615|ref|YP_002994039.1| - 5.7e-20 72.5 0.1 8.2e-19 68.7 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|242398615|ref|YP_002994039.1| - 4.9e-17 61.8 0.0 9.5e-17 60.8 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|242398615|ref|YP_002994039.1| - 1.8e-08 35.0 0.1 2.6e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|242398615|ref|YP_002994039.1| - 0.00064 19.4 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.12 gi|242398615|ref|YP_002994039.1| - 0.064 13.0 0.0 0.91 9.2 0.0 2.4 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase PNK3P PF08645.11 gi|242398615|ref|YP_002994039.1| - 0.082 12.6 0.1 0.52 10.0 0.0 2.3 2 1 0 2 2 2 0 Polynucleotide kinase 3 phosphatase ASCH PF04266.14 gi|242398616|ref|YP_002994040.1| - 1.8e-20 73.5 0.1 3.1e-20 72.7 0.1 1.4 1 0 0 1 1 1 1 ASCH domain Ribosomal_L26 PF16906.5 gi|242398616|ref|YP_002994040.1| - 0.08 13.4 0.2 0.15 12.5 0.2 1.6 1 0 0 1 1 1 0 Ribosomal proteins L26 eukaryotic, L24P archaeal DUF5600 PF18150.1 gi|242398616|ref|YP_002994040.1| - 0.11 13.1 0.7 0.4 11.3 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5600) Abi_2 PF07751.11 gi|242398616|ref|YP_002994040.1| - 0.14 12.5 0.7 0.17 12.1 0.7 1.2 1 0 0 1 1 1 0 Abi-like protein AsnC_trans_reg PF01037.21 gi|242398617|ref|YP_002994041.1| - 1.7e-19 69.5 0.1 2.7e-19 68.9 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|242398617|ref|YP_002994041.1| - 5.6e-18 64.2 0.6 8.6e-18 63.6 0.6 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|242398617|ref|YP_002994041.1| - 1.8e-16 59.6 0.0 3.2e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|242398617|ref|YP_002994041.1| - 7.7e-07 28.9 0.1 1.8e-06 27.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB NapD PF03927.13 gi|242398617|ref|YP_002994041.1| - 9.1e-06 25.6 0.0 1.7e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 NapD protein HTH_11 PF08279.12 gi|242398617|ref|YP_002994041.1| - 1.9e-05 24.5 0.1 3.8e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|242398617|ref|YP_002994041.1| - 2.4e-05 24.1 0.1 3.7e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|242398617|ref|YP_002994041.1| - 6.8e-05 22.6 0.0 0.00016 21.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Mga PF08280.11 gi|242398617|ref|YP_002994041.1| - 0.00034 20.6 0.1 0.0017 18.3 0.0 2.0 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.6 gi|242398617|ref|YP_002994041.1| - 0.00037 20.4 0.0 0.00064 19.7 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|242398617|ref|YP_002994041.1| - 0.00049 19.8 0.2 0.001 18.8 0.2 1.5 1 1 0 1 1 1 1 LexA DNA binding domain HTH_23 PF13384.6 gi|242398617|ref|YP_002994041.1| - 0.00082 19.1 0.1 0.0021 17.8 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_20 PF12840.7 gi|242398617|ref|YP_002994041.1| - 0.0013 18.7 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain AsnC_trans_reg2 PF17805.1 gi|242398617|ref|YP_002994041.1| - 0.0018 18.4 0.2 0.0074 16.4 0.0 1.9 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_27 PF13463.6 gi|242398617|ref|YP_002994041.1| - 0.0019 18.7 0.1 0.0036 17.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|242398617|ref|YP_002994041.1| - 0.0029 17.7 0.0 0.0052 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|242398617|ref|YP_002994041.1| - 0.0042 17.0 0.1 0.0081 16.1 0.1 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|242398617|ref|YP_002994041.1| - 0.01 16.2 0.3 0.24 11.8 0.1 2.3 2 0 0 2 2 2 0 Transcriptional regulator HTH_10 PF04967.12 gi|242398617|ref|YP_002994041.1| - 0.023 14.5 0.2 0.059 13.2 0.0 1.8 2 0 0 2 2 1 0 HTH DNA binding domain HTH_40 PF14493.6 gi|242398617|ref|YP_002994041.1| - 0.029 14.8 0.3 0.067 13.7 0.2 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|242398617|ref|YP_002994041.1| - 0.029 14.1 0.1 0.054 13.3 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|242398617|ref|YP_002994041.1| - 0.03 14.2 0.0 0.048 13.5 0.0 1.4 1 0 0 1 1 1 0 MarR family DDRGK PF09756.9 gi|242398617|ref|YP_002994041.1| - 0.035 13.7 0.8 0.053 13.1 0.2 1.5 2 0 0 2 2 2 0 DDRGK domain B-block_TFIIIC PF04182.12 gi|242398617|ref|YP_002994041.1| - 0.038 14.1 0.0 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.19 gi|242398617|ref|YP_002994041.1| - 0.041 14.1 0.1 0.09 13.0 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|242398617|ref|YP_002994041.1| - 0.048 13.6 0.1 0.08 12.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|242398617|ref|YP_002994041.1| - 0.073 13.4 0.2 0.13 12.6 0.2 1.4 1 0 0 1 1 1 0 Penicillinase repressor Mga PF05043.13 gi|242398617|ref|YP_002994041.1| - 0.1 13.2 0.2 0.29 11.7 0.1 1.8 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_50 PF18024.1 gi|242398617|ref|YP_002994041.1| - 0.11 12.1 0.1 0.11 12.1 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|242398617|ref|YP_002994041.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Phage_AlpA PF05930.12 gi|242398617|ref|YP_002994041.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) TFIIE_alpha PF02002.17 gi|242398617|ref|YP_002994041.1| - 0.18 11.7 0.2 0.18 11.7 0.2 1.8 2 1 0 2 2 2 0 TFIIE alpha subunit MMR_HSR1 PF01926.23 gi|242398618|ref|YP_002994042.1| - 3.4e-21 75.4 0.1 8.9e-21 74.1 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|242398618|ref|YP_002994042.1| - 5.4e-21 74.4 0.0 1.9e-20 72.7 0.0 2.0 2 0 0 2 2 2 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|242398618|ref|YP_002994042.1| - 1.1e-18 67.2 0.2 2.3e-18 66.1 0.2 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|242398618|ref|YP_002994042.1| - 9.6e-11 41.4 0.1 9.3e-10 38.2 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|242398618|ref|YP_002994042.1| - 0.00013 22.0 0.2 0.011 15.9 0.2 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF933) MMR_HSR1_C PF08438.10 gi|242398618|ref|YP_002994042.1| - 0.00071 20.1 0.0 0.002 18.7 0.0 1.8 1 0 0 1 1 1 1 GTPase of unknown function C-terminal RsgA_GTPase PF03193.16 gi|242398618|ref|YP_002994042.1| - 0.0025 17.8 3.3 1.5 8.7 0.0 3.2 2 2 1 3 3 3 2 RsgA GTPase Myb_DNA-bind_4 PF13837.6 gi|242398618|ref|YP_002994042.1| - 0.013 15.9 2.6 0.46 10.9 0.6 2.6 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain Dynamin_N PF00350.23 gi|242398618|ref|YP_002994042.1| - 0.017 15.2 1.1 0.14 12.2 1.1 2.8 1 1 0 1 1 1 0 Dynamin family Dus PF01207.17 gi|242398618|ref|YP_002994042.1| - 0.042 12.9 1.1 0.27 10.3 0.3 2.1 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) SRPRB PF09439.10 gi|242398618|ref|YP_002994042.1| - 0.052 13.0 0.1 0.18 11.2 0.0 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF573 PF04504.14 gi|242398618|ref|YP_002994042.1| - 0.1 13.2 1.1 0.34 11.6 1.1 1.8 1 0 0 1 1 1 0 Protein of unknown function, DUF573 MnmE_helical PF12631.7 gi|242398618|ref|YP_002994042.1| - 0.15 12.2 0.0 0.33 11.1 0.0 1.4 1 1 0 1 1 1 0 MnmE helical domain Radical_SAM PF04055.21 gi|242398619|ref|YP_002994043.1| - 3.2e-24 86.2 4.6 4.8e-24 85.6 2.3 2.2 2 1 0 2 2 2 1 Radical SAM superfamily Fer4 PF00037.27 gi|242398619|ref|YP_002994043.1| - 4.1e-17 61.2 9.4 3.5e-09 36.1 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_12 PF13353.6 gi|242398619|ref|YP_002994043.1| - 2.8e-15 56.8 5.0 1.2e-13 51.5 5.0 2.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_7 PF12838.7 gi|242398619|ref|YP_002994043.1| - 2e-11 44.3 14.0 4.2e-11 43.3 14.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|242398619|ref|YP_002994043.1| - 3e-11 42.9 14.3 6.5e-07 29.2 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|242398619|ref|YP_002994043.1| - 3.5e-11 43.1 10.0 7.2e-11 42.1 10.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242398619|ref|YP_002994043.1| - 4.6e-11 42.1 11.3 4.4e-06 26.5 3.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|242398619|ref|YP_002994043.1| - 2.9e-10 40.1 24.4 9e-08 32.1 13.8 2.2 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|242398619|ref|YP_002994043.1| - 1.1e-09 39.0 10.9 0.00015 22.6 2.6 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|242398619|ref|YP_002994043.1| - 1.2e-08 34.9 31.3 2.6e-08 33.9 14.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|242398619|ref|YP_002994043.1| - 1.8e-07 31.5 2.3 0.0041 17.5 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|242398619|ref|YP_002994043.1| - 3.1e-06 27.3 17.1 0.0002 21.6 1.9 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|242398619|ref|YP_002994043.1| - 1.3e-05 25.6 12.5 0.0079 16.7 3.4 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_14 PF13394.6 gi|242398619|ref|YP_002994043.1| - 0.00021 21.4 11.0 0.0005 20.2 1.5 3.0 2 1 1 3 3 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.6 gi|242398619|ref|YP_002994043.1| - 0.00034 21.3 7.3 0.0015 19.2 0.6 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|242398619|ref|YP_002994043.1| - 0.00058 20.6 23.9 0.0027 18.5 6.2 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|242398619|ref|YP_002994043.1| - 0.0011 19.4 14.9 0.093 13.3 3.4 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain zinc_ribbon_10 PF10058.9 gi|242398619|ref|YP_002994043.1| - 0.024 14.4 2.9 0.059 13.1 2.9 1.7 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Fer4_18 PF13746.6 gi|242398619|ref|YP_002994043.1| - 0.031 14.5 12.7 0.15 12.3 12.7 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|242398619|ref|YP_002994043.1| - 0.38 11.6 15.1 0.16 12.8 3.1 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Pro_racemase PF05544.11 gi|242398620|ref|YP_002994044.1| - 2e-120 401.7 0.0 2.4e-120 401.5 0.0 1.0 1 0 0 1 1 1 1 Proline racemase PhzC-PhzF PF02567.16 gi|242398620|ref|YP_002994044.1| - 0.00066 19.2 0.0 0.00098 18.7 0.0 1.2 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein PrpF PF04303.13 gi|242398620|ref|YP_002994044.1| - 0.0049 15.9 0.0 0.016 14.2 0.0 1.7 2 0 0 2 2 2 1 PrpF protein PFL-like PF02901.15 gi|242398621|ref|YP_002994045.1| - 5.3e-219 729.1 0.0 6.7e-219 728.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvate formate lyase-like Gly_radical PF01228.21 gi|242398621|ref|YP_002994045.1| - 3.8e-30 104.5 0.0 1.6e-29 102.5 0.0 2.1 2 0 0 2 2 2 1 Glycine radical TelA PF05816.11 gi|242398621|ref|YP_002994045.1| - 0.013 14.6 2.9 0.027 13.6 2.9 1.5 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) GP24_25 PF17388.2 gi|242398621|ref|YP_002994045.1| - 0.12 12.4 3.7 0.37 10.8 0.1 2.5 2 0 0 2 2 2 0 Tail assembly gene products 24 & 25 SNF PF00209.18 gi|242398622|ref|YP_002994046.1| - 2.9e-53 181.4 45.9 3.3e-30 105.3 25.3 2.6 2 1 0 2 2 2 2 Sodium:neurotransmitter symporter family Pro_racemase PF05544.11 gi|242398623|ref|YP_002994047.1| - 1e-105 353.4 0.1 1.2e-105 353.2 0.1 1.0 1 0 0 1 1 1 1 Proline racemase PhzC-PhzF PF02567.16 gi|242398623|ref|YP_002994047.1| - 1.9e-07 30.8 0.0 2.8e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 gi|242398623|ref|YP_002994047.1| - 2.3e-05 24.6 0.1 0.22 11.7 0.0 2.3 2 0 0 2 2 2 2 Diaminopimelate epimerase OCD_Mu_crystall PF02423.15 gi|242398624|ref|YP_002994048.1| - 7e-97 324.2 2.6 7.8e-97 324.0 2.6 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|242398624|ref|YP_002994048.1| - 1.4e-07 31.6 0.7 2.3e-07 31.0 0.7 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|242398624|ref|YP_002994048.1| - 0.00045 19.6 0.5 0.00076 18.8 0.5 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain F420_oxidored PF03807.17 gi|242398624|ref|YP_002994048.1| - 0.0034 17.9 1.3 0.0092 16.5 1.3 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DUF3939 PF13075.6 gi|242398624|ref|YP_002994048.1| - 0.028 14.4 0.1 0.061 13.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3939) PTS_IIB PF02302.17 gi|242398624|ref|YP_002994048.1| - 0.038 14.7 0.5 0.17 12.6 0.2 2.2 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit DUF1318 PF07027.12 gi|242398624|ref|YP_002994048.1| - 0.13 12.7 0.5 0.3 11.6 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1318) Pyr_redox_2 PF07992.14 gi|242398625|ref|YP_002994049.1| - 9e-21 74.4 0.7 9.6e-14 51.3 0.3 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|242398625|ref|YP_002994049.1| - 1.6e-12 47.2 0.0 4.7e-12 45.8 0.0 1.8 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SO_alpha_A3 PF17806.1 gi|242398625|ref|YP_002994049.1| - 5.1e-08 33.1 0.0 8.9e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain FAD_oxidored PF12831.7 gi|242398625|ref|YP_002994049.1| - 1.6e-07 31.1 0.2 2.2e-07 30.6 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|242398625|ref|YP_002994049.1| - 2.3e-06 27.5 3.6 0.00011 21.9 3.7 2.2 1 1 1 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|242398625|ref|YP_002994049.1| - 0.0001 21.5 1.5 0.0033 16.6 0.9 2.7 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|242398625|ref|YP_002994049.1| - 0.003 17.8 0.6 0.014 15.7 0.2 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|242398625|ref|YP_002994049.1| - 0.003 16.9 0.2 0.0057 15.9 0.2 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|242398625|ref|YP_002994049.1| - 0.014 14.6 5.4 0.4 9.9 2.7 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|242398625|ref|YP_002994049.1| - 0.037 13.1 5.1 0.34 9.9 1.3 2.7 3 0 0 3 3 3 0 Glucose inhibited division protein A HI0933_like PF03486.14 gi|242398625|ref|YP_002994049.1| - 0.041 12.6 2.2 0.069 11.8 1.7 1.7 1 1 1 2 2 2 0 HI0933-like protein FAD_binding_3 PF01494.19 gi|242398625|ref|YP_002994049.1| - 0.073 12.3 1.3 0.11 11.8 1.3 1.2 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.12 gi|242398625|ref|YP_002994049.1| - 0.14 11.2 0.4 0.44 9.5 0.5 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|242398625|ref|YP_002994049.1| - 0.23 11.4 1.3 2.9 7.9 0.9 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding DAO PF01266.24 gi|242398626|ref|YP_002994050.1| - 3.9e-74 250.3 0.0 4.4e-74 250.2 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|242398626|ref|YP_002994050.1| - 1.5e-07 30.9 0.0 2e-07 30.4 0.0 1.3 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|242398626|ref|YP_002994050.1| - 1.6e-06 28.2 0.1 4.3e-06 26.9 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|242398626|ref|YP_002994050.1| - 1.2e-05 25.8 2.2 2.1e-05 25.0 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|242398626|ref|YP_002994050.1| - 3.5e-05 23.2 0.4 0.00059 19.2 0.1 2.2 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.14 gi|242398626|ref|YP_002994050.1| - 4e-05 23.0 0.1 7.4e-05 22.1 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|242398626|ref|YP_002994050.1| - 0.00012 21.5 0.2 0.00019 20.8 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|242398626|ref|YP_002994050.1| - 0.00014 21.3 1.3 0.0023 17.2 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|242398626|ref|YP_002994050.1| - 0.0037 16.4 0.3 0.0062 15.6 0.3 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein TrkA_N PF02254.18 gi|242398626|ref|YP_002994050.1| - 0.0037 17.5 3.2 0.0058 16.9 0.4 2.2 2 0 0 2 2 2 1 TrkA-N domain HI0933_like PF03486.14 gi|242398626|ref|YP_002994050.1| - 0.005 15.6 0.2 0.0092 14.7 0.2 1.4 1 0 0 1 1 1 1 HI0933-like protein ApbA PF02558.16 gi|242398626|ref|YP_002994050.1| - 0.006 16.2 0.1 0.012 15.2 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|242398626|ref|YP_002994050.1| - 0.0099 16.3 0.2 0.027 14.9 0.2 1.8 1 1 0 1 1 1 1 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|242398626|ref|YP_002994050.1| - 0.023 14.1 2.2 0.2 11.0 2.2 2.1 1 1 0 1 1 1 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|242398626|ref|YP_002994050.1| - 0.028 13.7 0.7 0.1 11.9 0.1 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|242398626|ref|YP_002994050.1| - 0.042 12.9 0.4 0.35 9.9 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|242398626|ref|YP_002994050.1| - 0.082 11.7 1.5 0.17 10.7 1.5 1.7 1 1 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|242398626|ref|YP_002994050.1| - 0.14 12.1 0.1 0.28 11.2 0.1 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|242398626|ref|YP_002994050.1| - 0.25 11.6 0.7 0.81 9.9 0.5 1.9 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|242398626|ref|YP_002994050.1| - 0.31 11.6 2.6 0.32 11.6 0.7 2.0 2 1 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|242398627|ref|YP_002994051.1| - 1.1e-38 133.1 7.6 1.5e-38 132.7 7.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|242398627|ref|YP_002994051.1| - 3.6e-28 97.4 0.1 7.3e-28 96.4 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_3 PF13738.6 gi|242398627|ref|YP_002994051.1| - 5e-16 58.8 2.9 1.4e-13 50.8 2.9 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|242398627|ref|YP_002994051.1| - 1.9e-15 56.9 10.2 7.4e-08 31.9 1.2 3.4 2 1 1 3 3 3 3 FAD binding domain FAD_oxidored PF12831.7 gi|242398627|ref|YP_002994051.1| - 5.3e-15 55.7 9.3 1.8e-12 47.3 1.5 3.2 2 1 1 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|242398627|ref|YP_002994051.1| - 6.4e-14 51.5 10.4 3.2e-09 36.0 1.3 3.2 3 0 0 3 3 3 3 HI0933-like protein Pyr_redox PF00070.27 gi|242398627|ref|YP_002994051.1| - 1.8e-13 50.9 8.8 2.6e-06 27.9 0.7 3.8 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|242398627|ref|YP_002994051.1| - 2.7e-10 40.3 2.3 4.9e-05 23.5 0.1 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|242398627|ref|YP_002994051.1| - 4.9e-10 39.0 16.6 3e-05 23.3 0.9 4.1 3 1 0 4 4 4 4 Glucose inhibited division protein A DAO PF01266.24 gi|242398627|ref|YP_002994051.1| - 1e-09 38.5 10.6 0.0024 17.5 0.1 4.0 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|242398627|ref|YP_002994051.1| - 3.3e-09 36.5 4.8 0.00043 19.6 0.4 2.5 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.17 gi|242398627|ref|YP_002994051.1| - 2.5e-07 30.2 3.7 0.0012 18.1 0.0 2.9 3 0 0 3 3 3 2 Thi4 family NAD_binding_7 PF13241.6 gi|242398627|ref|YP_002994051.1| - 1.6e-06 28.5 2.4 0.013 15.9 0.2 3.3 2 1 0 3 3 3 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|242398627|ref|YP_002994051.1| - 2.7e-05 23.6 9.3 7.5e-05 22.1 0.2 3.1 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|242398627|ref|YP_002994051.1| - 6.2e-05 22.2 2.8 0.024 13.7 0.3 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein ApbA PF02558.16 gi|242398627|ref|YP_002994051.1| - 0.0015 18.2 4.7 0.0039 16.9 0.6 3.1 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA ELFV_dehydrog PF00208.21 gi|242398627|ref|YP_002994051.1| - 0.0043 16.8 0.2 0.036 13.8 0.2 2.2 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PALP PF00291.25 gi|242398627|ref|YP_002994051.1| - 0.024 14.1 0.4 0.17 11.2 0.1 2.2 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme TrkA_N PF02254.18 gi|242398627|ref|YP_002994051.1| - 0.024 14.9 1.3 8.5 6.7 0.0 3.2 3 0 0 3 3 2 0 TrkA-N domain Fer2_3 PF13085.6 gi|242398627|ref|YP_002994051.1| - 0.033 14.2 0.0 0.06 13.4 0.0 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain K_oxygenase PF13434.6 gi|242398627|ref|YP_002994051.1| - 0.049 12.8 0.1 0.27 10.3 0.0 2.0 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Amino_oxidase PF01593.24 gi|242398627|ref|YP_002994051.1| - 0.054 12.8 0.0 1.8 7.7 0.0 2.9 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 gi|242398627|ref|YP_002994051.1| - 0.14 12.0 3.9 4.1 7.3 0.5 2.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|242398627|ref|YP_002994051.1| - 0.15 12.7 2.4 0.57 10.8 0.9 2.8 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Trp_halogenase PF04820.14 gi|242398627|ref|YP_002994051.1| - 0.16 10.8 4.5 0.35 9.7 0.4 2.3 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.21 gi|242398627|ref|YP_002994051.1| - 0.17 11.2 0.4 0.48 9.7 0.1 1.8 2 0 0 2 2 2 0 ThiF family DHODB_Fe-S_bind PF10418.9 gi|242398627|ref|YP_002994051.1| - 0.22 11.4 1.8 0.41 10.5 1.8 1.4 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B YdfZ PF14001.6 gi|242398627|ref|YP_002994051.1| - 0.25 11.8 1.9 2.4 8.6 0.0 3.0 3 0 0 3 3 3 0 YdfZ protein NAD_binding_9 PF13454.6 gi|242398627|ref|YP_002994051.1| - 1.9 8.4 6.3 4.2 7.3 0.1 3.4 4 0 0 4 4 4 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|242398627|ref|YP_002994051.1| - 6.6 6.3 7.6 6.7 6.2 1.4 3.0 3 1 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Fer4 PF00037.27 gi|242398628|ref|YP_002994052.1| - 1.4e-06 27.9 2.3 1.4e-06 27.9 2.3 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|242398628|ref|YP_002994052.1| - 1.6e-06 27.9 13.2 8e-05 22.5 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|242398628|ref|YP_002994052.1| - 2.4e-06 27.6 10.1 4.3e-06 26.8 10.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|242398628|ref|YP_002994052.1| - 4.1e-06 27.3 19.6 0.00014 22.3 10.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|242398628|ref|YP_002994052.1| - 3.7e-05 23.8 9.4 8.5e-05 22.6 9.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|242398628|ref|YP_002994052.1| - 0.00012 22.8 13.1 0.0037 18.1 4.1 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|242398628|ref|YP_002994052.1| - 0.00012 22.0 2.4 0.00012 22.0 2.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|242398628|ref|YP_002994052.1| - 0.00025 21.1 13.0 0.00058 19.9 13.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|242398628|ref|YP_002994052.1| - 0.00027 21.3 1.4 0.0099 16.3 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|242398628|ref|YP_002994052.1| - 0.0029 18.1 0.1 0.0029 18.1 0.1 2.6 2 1 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|242398628|ref|YP_002994052.1| - 0.0037 17.6 0.6 0.0037 17.6 0.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|242398628|ref|YP_002994052.1| - 0.004 18.0 13.1 0.21 12.5 2.3 2.4 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|242398628|ref|YP_002994052.1| - 0.015 16.0 0.2 0.015 16.0 0.2 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Phage_base_V PF04717.12 gi|242398628|ref|YP_002994052.1| - 0.2 11.6 0.0 0.29 11.1 0.0 1.2 1 0 0 1 1 1 0 Type VI secretion system, phage-baseplate injector Fer4_17 PF13534.6 gi|242398628|ref|YP_002994052.1| - 2.5 8.7 12.0 0.4 11.3 1.9 2.5 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|242398628|ref|YP_002994052.1| - 3.2 8.0 11.4 0.79 9.9 2.4 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer2_BFD PF04324.15 gi|242398629|ref|YP_002994053.1| - 3.9e-14 52.7 2.1 5.9e-14 52.1 2.1 1.3 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain SO_alpha_A3 PF17806.1 gi|242398629|ref|YP_002994053.1| - 2.5e-13 50.1 0.0 2.9e-13 49.9 0.0 1.0 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain DAO PF01266.24 gi|242398630|ref|YP_002994054.1| - 5.1e-77 259.8 0.0 5.8e-77 259.6 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|242398630|ref|YP_002994054.1| - 1.3e-09 37.7 0.0 1.9e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|242398630|ref|YP_002994054.1| - 6.7e-06 25.6 3.4 0.00025 20.4 3.4 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|242398630|ref|YP_002994054.1| - 1.2e-05 24.8 1.6 0.00013 21.3 0.6 2.2 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|242398630|ref|YP_002994054.1| - 1.4e-05 24.0 1.0 0.026 13.2 0.5 2.3 2 1 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|242398630|ref|YP_002994054.1| - 1.4e-05 24.5 0.2 0.0028 17.0 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|242398630|ref|YP_002994054.1| - 1.5e-05 25.5 2.9 0.0014 19.2 0.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|242398630|ref|YP_002994054.1| - 6e-05 22.3 2.7 0.00038 19.6 0.2 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|242398630|ref|YP_002994054.1| - 0.00011 22.4 0.1 0.00035 20.8 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|242398630|ref|YP_002994054.1| - 0.00043 19.6 1.3 0.0024 17.2 0.2 2.0 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 gi|242398630|ref|YP_002994054.1| - 0.0015 19.0 0.0 0.0078 16.6 0.0 2.0 1 1 0 1 1 1 1 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|242398630|ref|YP_002994054.1| - 0.0032 16.9 4.9 0.05 12.9 4.9 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase ApbA PF02558.16 gi|242398630|ref|YP_002994054.1| - 0.0063 16.2 0.1 0.011 15.3 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|242398630|ref|YP_002994054.1| - 0.0066 15.5 0.0 0.0089 15.1 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|242398630|ref|YP_002994054.1| - 0.01 15.7 0.5 0.017 15.0 0.5 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|242398630|ref|YP_002994054.1| - 0.017 15.2 1.1 0.15 12.1 0.3 2.4 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|242398630|ref|YP_002994054.1| - 0.077 13.0 0.4 0.24 11.4 0.3 1.7 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trp_halogenase PF04820.14 gi|242398630|ref|YP_002994054.1| - 0.098 11.5 2.2 0.14 10.9 0.8 1.8 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|242398630|ref|YP_002994054.1| - 0.15 12.0 0.3 0.15 12.0 0.3 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding Phage_XkdX PF09693.10 gi|242398630|ref|YP_002994054.1| - 0.19 11.8 2.1 0.81 9.8 0.1 2.6 2 0 0 2 2 2 0 Phage uncharacterised protein (Phage_XkdX) 2-Hacid_dh_C PF02826.19 gi|242398630|ref|YP_002994054.1| - 0.32 10.3 1.3 3.5 7.0 0.4 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|242398630|ref|YP_002994054.1| - 0.34 10.2 3.1 0.33 10.2 0.7 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain SSF PF00474.17 gi|242398632|ref|YP_002994056.1| - 5e-38 131.0 31.9 5e-38 131.0 31.9 1.6 2 0 0 2 2 2 1 Sodium:solute symporter family Ribosomal_L39 PF00832.20 gi|242398634|ref|YP_002994058.1| - 2e-21 75.3 14.1 2.6e-21 75.0 14.1 1.2 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|242398635|ref|YP_002994059.1| - 3.9e-14 52.6 0.8 5.2e-14 52.2 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|242398636|ref|YP_002994060.1| - 1.5e-67 226.8 0.0 1.8e-67 226.6 0.0 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|242398637|ref|YP_002994061.1| - 8.1e-11 42.1 0.1 1.2e-10 41.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|242398638|ref|YP_002994062.1| - 1.2e-29 102.7 4.3 1.6e-29 102.2 4.3 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|242398638|ref|YP_002994062.1| - 1.1e-06 28.6 11.1 0.00016 21.6 3.0 2.2 2 0 0 2 2 2 2 Prefoldin subunit ERM PF00769.19 gi|242398638|ref|YP_002994062.1| - 0.00052 19.9 12.1 0.0062 16.4 4.5 2.0 2 0 0 2 2 2 2 Ezrin/radixin/moesin family PriC PF07445.12 gi|242398638|ref|YP_002994062.1| - 0.00081 19.4 1.8 0.0014 18.6 1.8 1.3 1 1 0 1 1 1 1 Primosomal replication protein priC SlyX PF04102.12 gi|242398638|ref|YP_002994062.1| - 0.0012 19.5 4.1 0.0012 19.5 4.1 2.4 2 1 0 2 2 2 1 SlyX Fib_alpha PF08702.10 gi|242398638|ref|YP_002994062.1| - 0.0013 18.9 2.5 0.0013 18.9 2.5 1.6 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family DUF16 PF01519.16 gi|242398638|ref|YP_002994062.1| - 0.0027 18.2 0.5 0.0027 18.2 0.5 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF16 FmiP_Thoc5 PF09766.9 gi|242398638|ref|YP_002994062.1| - 0.0029 17.0 3.4 0.0029 17.0 3.4 1.8 2 0 0 2 2 2 1 Fms-interacting protein/Thoc5 YkyA PF10368.9 gi|242398638|ref|YP_002994062.1| - 0.0042 16.8 7.5 0.028 14.1 1.3 2.2 2 0 0 2 2 2 1 Putative cell-wall binding lipoprotein DUF5082 PF16888.5 gi|242398638|ref|YP_002994062.1| - 0.0054 17.0 3.1 0.011 16.0 2.5 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF5082) Gp-FAR-1 PF05823.12 gi|242398638|ref|YP_002994062.1| - 0.0092 16.3 1.1 0.016 15.5 0.5 1.7 1 1 0 1 1 1 1 Nematode fatty acid retinoid binding protein (Gp-FAR-1) KLRAQ PF10205.9 gi|242398638|ref|YP_002994062.1| - 0.01 16.0 5.7 0.089 13.0 1.3 2.3 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein OmpH PF03938.14 gi|242398638|ref|YP_002994062.1| - 0.013 15.8 2.6 0.013 15.8 2.6 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Prefoldin_3 PF13758.6 gi|242398638|ref|YP_002994062.1| - 0.017 15.2 0.8 0.024 14.7 0.1 1.6 2 0 0 2 2 1 0 Prefoldin subunit DUF724 PF05266.14 gi|242398638|ref|YP_002994062.1| - 0.026 14.3 2.5 0.026 14.3 2.5 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF1664 PF07889.12 gi|242398638|ref|YP_002994062.1| - 0.026 14.5 1.5 0.044 13.8 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) PspA_IM30 PF04012.12 gi|242398638|ref|YP_002994062.1| - 0.027 14.0 5.9 0.027 14.0 5.9 1.9 2 0 0 2 2 2 0 PspA/IM30 family CENP-Q PF13094.6 gi|242398638|ref|YP_002994062.1| - 0.04 14.1 3.0 0.04 14.1 3.0 1.8 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Jnk-SapK_ap_N PF09744.9 gi|242398638|ref|YP_002994062.1| - 0.046 13.9 2.0 0.046 13.9 2.0 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 BRE PF06113.12 gi|242398638|ref|YP_002994062.1| - 0.052 12.4 0.1 0.093 11.6 0.1 1.3 1 0 0 1 1 1 0 Brain and reproductive organ-expressed protein (BRE) COG2 PF06148.11 gi|242398638|ref|YP_002994062.1| - 0.066 13.3 0.2 0.066 13.3 0.2 1.9 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TraF_2 PF13729.6 gi|242398638|ref|YP_002994062.1| - 0.067 12.6 0.2 0.094 12.1 0.2 1.2 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein HAUS-augmin3 PF14932.6 gi|242398638|ref|YP_002994062.1| - 0.071 12.7 11.7 0.26 10.8 1.7 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Fusion_gly PF00523.18 gi|242398638|ref|YP_002994062.1| - 0.12 10.6 0.7 0.17 10.1 0.7 1.2 1 0 0 1 1 1 0 Fusion glycoprotein F0 Spc7 PF08317.11 gi|242398638|ref|YP_002994062.1| - 0.12 11.2 10.9 0.034 13.0 2.0 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein UPF0242 PF06785.11 gi|242398638|ref|YP_002994062.1| - 0.13 12.4 8.7 0.12 12.5 0.9 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus FlaC_arch PF05377.11 gi|242398638|ref|YP_002994062.1| - 0.13 12.6 2.5 1.2 9.6 0.4 2.7 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) FliD_N PF02465.18 gi|242398638|ref|YP_002994062.1| - 0.14 12.9 2.9 3.3 8.4 2.4 2.2 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Laminin_II PF06009.12 gi|242398638|ref|YP_002994062.1| - 0.15 12.0 3.8 0.15 12.1 0.4 2.1 2 0 0 2 2 2 0 Laminin Domain II Noelin-1 PF12308.8 gi|242398638|ref|YP_002994062.1| - 0.18 11.8 4.0 0.57 10.2 0.7 2.1 2 0 0 2 2 2 0 Neurogenesis glycoprotein Uso1_p115_C PF04871.13 gi|242398638|ref|YP_002994062.1| - 0.18 12.2 8.6 0.09 13.2 3.1 2.1 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region HAUS6_N PF14661.6 gi|242398638|ref|YP_002994062.1| - 0.2 11.2 3.7 0.09 12.3 0.5 1.8 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus FUSC PF04632.12 gi|242398638|ref|YP_002994062.1| - 0.29 9.6 0.8 0.38 9.2 0.8 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Uds1 PF15456.6 gi|242398638|ref|YP_002994062.1| - 0.37 11.0 6.9 1.7 8.8 6.9 2.0 1 1 0 1 1 1 0 Up-regulated During Septation Synaptobrevin PF00957.21 gi|242398638|ref|YP_002994062.1| - 0.46 10.3 3.8 1.6 8.5 0.4 2.3 2 0 0 2 2 2 0 Synaptobrevin V_ATPase_I PF01496.19 gi|242398638|ref|YP_002994062.1| - 0.51 8.2 3.2 0.15 9.9 0.1 1.5 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family PEP-utilisers_N PF05524.13 gi|242398638|ref|YP_002994062.1| - 0.58 10.3 4.5 0.2 11.9 0.9 2.0 2 1 0 2 2 2 0 PEP-utilising enzyme, N-terminal DUF2730 PF10805.8 gi|242398638|ref|YP_002994062.1| - 0.59 10.3 6.4 0.39 10.8 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) NPV_P10 PF05531.12 gi|242398638|ref|YP_002994062.1| - 0.69 10.4 5.1 0.47 10.9 0.7 2.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein YabA PF06156.13 gi|242398638|ref|YP_002994062.1| - 0.77 10.4 6.5 0.49 11.1 0.9 2.2 2 0 0 2 2 2 0 Initiation control protein YabA Spc24 PF08286.11 gi|242398638|ref|YP_002994062.1| - 0.82 9.9 7.7 0.27 11.5 0.8 2.3 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 TolA_bind_tri PF16331.5 gi|242398638|ref|YP_002994062.1| - 0.86 9.7 15.3 2.2 8.4 2.9 2.5 2 0 0 2 2 2 0 TolA binding protein trimerisation DegS PF05384.11 gi|242398638|ref|YP_002994062.1| - 1.1 8.7 9.1 0.093 12.2 1.7 2.1 2 0 0 2 2 2 0 Sensor protein DegS Helo_like_N PF17111.5 gi|242398638|ref|YP_002994062.1| - 1.2 8.5 5.6 0.2 11.0 0.9 1.9 2 1 0 2 2 2 0 Fungal N-terminal domain of STAND proteins Tup_N PF08581.10 gi|242398638|ref|YP_002994062.1| - 1.3 9.4 11.5 1.4 9.3 3.9 2.8 2 1 1 3 3 3 0 Tup N-terminal EMP24_GP25L PF01105.24 gi|242398638|ref|YP_002994062.1| - 1.3 9.0 3.7 0.42 10.5 0.2 1.8 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD ADIP PF11559.8 gi|242398638|ref|YP_002994062.1| - 1.4 9.0 12.8 0.34 11.0 4.3 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding CREPT PF16566.5 gi|242398638|ref|YP_002994062.1| - 1.8 8.7 8.2 1.4 9.1 2.0 2.1 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour BLOC1_2 PF10046.9 gi|242398638|ref|YP_002994062.1| - 1.9 8.8 11.3 16 5.9 4.1 2.9 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4140 PF13600.6 gi|242398638|ref|YP_002994062.1| - 5.3 7.6 9.6 0.47 10.9 1.7 2.5 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DHR10 PF18595.1 gi|242398638|ref|YP_002994062.1| - 6.3 6.9 16.1 0.29 11.2 5.2 2.4 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain Tektin PF03148.14 gi|242398638|ref|YP_002994062.1| - 7.4 5.2 12.1 0.15 10.8 3.3 2.0 2 0 0 2 2 2 0 Tektin family ZapB PF06005.12 gi|242398638|ref|YP_002994062.1| - 7.4 7.1 18.0 0.67 10.4 4.6 2.7 2 1 0 2 2 2 0 Cell division protein ZapB Epimerase PF01370.21 gi|242398639|ref|YP_002994063.1| - 6.7e-63 212.4 0.1 8e-63 212.1 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|242398639|ref|YP_002994063.1| - 2.4e-59 201.4 0.0 3.1e-59 201.1 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|242398639|ref|YP_002994063.1| - 3.8e-24 85.1 0.1 5.2e-24 84.7 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|242398639|ref|YP_002994063.1| - 6.4e-18 64.9 0.4 6.7e-17 61.6 0.4 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|242398639|ref|YP_002994063.1| - 7.2e-16 58.1 0.0 9.7e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|242398639|ref|YP_002994063.1| - 6.9e-13 48.4 0.0 1.4e-09 37.5 0.0 2.4 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|242398639|ref|YP_002994063.1| - 4.6e-07 29.9 0.0 6.8e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|242398639|ref|YP_002994063.1| - 8.1e-05 22.9 0.1 0.00014 22.1 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|242398639|ref|YP_002994063.1| - 0.00023 20.7 0.0 0.0006 19.3 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|242398639|ref|YP_002994063.1| - 0.0021 17.7 0.1 0.0038 16.8 0.1 1.5 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.18 gi|242398639|ref|YP_002994063.1| - 0.0059 16.8 0.3 0.015 15.6 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain DUF1188 PF06690.11 gi|242398639|ref|YP_002994063.1| - 0.03 13.9 0.1 0.043 13.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) KR PF08659.10 gi|242398639|ref|YP_002994063.1| - 0.045 13.7 0.4 1.1 9.1 0.4 2.6 1 1 0 1 1 1 0 KR domain UPF0113 PF03657.13 gi|242398639|ref|YP_002994063.1| - 0.12 12.7 0.1 0.41 10.9 0.0 1.9 2 0 0 2 2 2 0 UPF0113 PUA domain Adenylsucc_synt PF00709.21 gi|242398640|ref|YP_002994064.1| - 5e-91 305.7 1.9 2e-43 148.9 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase CytochromB561_N PF09786.9 gi|242398640|ref|YP_002994064.1| - 0.07 12.1 0.0 0.092 11.7 0.0 1.1 1 0 0 1 1 1 0 Cytochrome B561, N terminal DUF2268 PF10026.9 gi|242398641|ref|YP_002994065.1| - 0.0074 15.9 0.3 0.015 14.8 0.3 1.5 1 1 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) Hydrolase_4 PF12146.8 gi|242398642|ref|YP_002994066.1| - 1.2e-17 64.0 0.1 1.3e-17 63.9 0.1 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|242398642|ref|YP_002994066.1| - 2e-08 34.2 0.1 2.3e-08 34.0 0.1 1.0 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|242398642|ref|YP_002994066.1| - 2.4e-06 28.3 0.1 2.8e-06 28.1 0.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family RMMBL PF07521.12 gi|242398642|ref|YP_002994066.1| - 0.17 11.9 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Zn-dependent metallo-hydrolase RNA specificity domain Lipase_2 PF01674.18 gi|242398642|ref|YP_002994066.1| - 0.2 11.2 0.0 0.21 11.1 0.0 1.0 1 0 0 1 1 1 0 Lipase (class 2) LapA_dom PF06305.11 gi|242398643|ref|YP_002994067.1| - 0.0036 17.1 0.6 0.0036 17.1 0.6 2.9 1 1 2 3 3 3 1 Lipopolysaccharide assembly protein A domain DUF2062 PF09835.9 gi|242398643|ref|YP_002994067.1| - 0.022 14.6 0.9 0.022 14.6 0.9 2.1 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2062) YoqO PF14037.6 gi|242398645|ref|YP_002994069.1| - 0.0051 17.3 10.0 0.019 15.5 1.2 2.5 1 1 1 2 2 2 2 YoqO-like protein BCHF PF07284.11 gi|242398645|ref|YP_002994069.1| - 0.34 10.9 8.9 0.61 10.1 8.9 1.5 1 1 0 1 1 1 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) AdoHcyase PF05221.17 gi|242398649|ref|YP_002994073.1| - 3.5e-66 223.4 0.0 7.8e-35 120.5 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|242398649|ref|YP_002994073.1| - 8.7e-51 172.2 0.2 1.7e-50 171.3 0.1 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|242398649|ref|YP_002994073.1| - 1.2e-07 31.3 0.1 2.9e-07 30.0 0.1 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|242398649|ref|YP_002994073.1| - 1.4e-05 24.8 0.1 2.8e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|242398649|ref|YP_002994073.1| - 0.00081 19.3 1.9 0.15 12.0 0.5 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|242398649|ref|YP_002994073.1| - 0.014 14.6 0.1 0.028 13.6 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|242398649|ref|YP_002994073.1| - 0.021 15.1 0.1 0.059 13.6 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|242398649|ref|YP_002994073.1| - 0.057 12.7 0.4 0.13 11.6 0.4 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NifT PF06988.11 gi|242398649|ref|YP_002994073.1| - 0.1 12.4 0.0 0.38 10.6 0.0 2.0 1 0 0 1 1 1 0 NifT/FixU protein Cyclase PF04199.13 gi|242398650|ref|YP_002994074.1| - 6.2e-25 88.0 0.0 1e-24 87.3 0.0 1.4 1 0 0 1 1 1 1 Putative cyclase GCV_T PF01571.21 gi|242398651|ref|YP_002994075.1| - 2e-97 325.6 0.0 2.4e-97 325.3 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|242398651|ref|YP_002994075.1| - 1.3e-21 76.3 0.1 2.9e-21 75.2 0.1 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Usp PF00582.26 gi|242398652|ref|YP_002994076.1| - 3.8e-35 121.4 6.3 5.7e-18 65.8 0.4 2.8 2 1 0 2 2 2 2 Universal stress protein family RQC PF09382.10 gi|242398652|ref|YP_002994076.1| - 0.0043 16.8 0.1 0.031 14.0 0.0 2.3 2 1 1 3 3 3 1 RQC domain HSDR_N PF04313.14 gi|242398653|ref|YP_002994077.1| - 2.3e-11 44.0 0.8 9.2e-07 29.0 0.2 2.4 1 1 1 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|242398653|ref|YP_002994077.1| - 5.6e-11 42.4 0.0 1.1e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_9 PF08011.11 gi|242398653|ref|YP_002994077.1| - 0.0017 18.2 0.2 0.0041 17.0 0.0 1.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily SfsA PF03749.13 gi|242398653|ref|YP_002994077.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Sugar fermentation stimulation protein RE domain DUF364 PF04016.12 gi|242398654|ref|YP_002994078.1| - 9.5e-37 125.8 0.0 1.6e-36 125.1 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|242398654|ref|YP_002994078.1| - 9.3e-15 54.6 0.0 1.8e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 Putative heavy-metal chelation GATase_6 PF13522.6 gi|242398655|ref|YP_002994079.1| - 2.3e-08 34.3 0.0 3.5e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|242398655|ref|YP_002994079.1| - 1.8e-07 30.3 0.0 2.8e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II APOC4 PF15119.6 gi|242398655|ref|YP_002994079.1| - 0.19 12.0 0.0 0.51 10.6 0.0 1.7 2 0 0 2 2 2 0 Apolipoprotein C4 Pterin_bind PF00809.22 gi|242398656|ref|YP_002994080.1| - 1.9e-61 207.9 0.0 2.1e-61 207.7 0.0 1.0 1 0 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.16 gi|242398656|ref|YP_002994080.1| - 0.00097 18.0 0.1 0.0013 17.5 0.1 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF4974 PF16344.5 gi|242398656|ref|YP_002994080.1| - 0.13 12.3 0.3 3.1 7.9 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4974) GHMP_kinases_C PF08544.13 gi|242398657|ref|YP_002994081.1| - 3.3e-08 33.8 0.0 8.7e-08 32.4 0.0 1.7 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|242398657|ref|YP_002994081.1| - 7.5e-08 32.5 0.1 1.6e-07 31.4 0.1 1.6 2 0 0 2 2 2 1 GHMP kinases N terminal domain MobL PF18555.1 gi|242398657|ref|YP_002994081.1| - 0.11 11.8 0.3 2.9 7.0 0.0 2.0 2 0 0 2 2 2 0 MobL relaxases DUF835 PF05763.12 gi|242398658|ref|YP_002994082.1| - 5.9e-25 87.6 0.0 8.7e-25 87.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF4401 PF14351.6 gi|242398658|ref|YP_002994082.1| - 0.024 14.0 8.2 0.034 13.4 8.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) ABC_tran PF00005.27 gi|242398659|ref|YP_002994083.1| - 4.3e-43 147.1 0.0 1.6e-22 80.5 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|242398659|ref|YP_002994083.1| - 1.1e-14 55.0 5.2 0.0054 16.6 0.0 4.3 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|242398659|ref|YP_002994083.1| - 2.7e-14 53.1 3.7 3.3e-05 23.5 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain Fer4 PF00037.27 gi|242398659|ref|YP_002994083.1| - 3.5e-07 29.7 3.5 7.1e-07 28.8 3.5 1.5 1 0 0 1 1 1 1 4Fe-4S binding domain AAA PF00004.29 gi|242398659|ref|YP_002994083.1| - 6.2e-07 29.9 0.2 0.021 15.3 0.0 3.3 3 1 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|242398659|ref|YP_002994083.1| - 4.7e-06 26.5 0.3 0.038 13.7 0.0 3.7 3 1 1 4 4 4 1 AAA ATPase domain AAA_16 PF13191.6 gi|242398659|ref|YP_002994083.1| - 5.5e-06 26.9 0.1 0.11 12.9 0.0 2.7 2 2 0 2 2 2 2 AAA ATPase domain Fer4_21 PF14697.6 gi|242398659|ref|YP_002994083.1| - 6e-06 26.3 1.5 9.7e-06 25.6 1.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Rad17 PF03215.15 gi|242398659|ref|YP_002994083.1| - 9.8e-06 25.6 0.0 0.15 12.0 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_24 PF13479.6 gi|242398659|ref|YP_002994083.1| - 4e-05 23.4 0.2 0.071 12.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|242398659|ref|YP_002994083.1| - 4.8e-05 23.9 1.5 0.02 15.4 0.1 3.8 3 1 1 4 4 4 1 AAA domain Fer4_6 PF12837.7 gi|242398659|ref|YP_002994083.1| - 7.9e-05 22.6 3.0 0.00015 21.7 3.0 1.5 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|242398659|ref|YP_002994083.1| - 0.00016 21.8 0.4 0.00029 20.9 0.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|242398659|ref|YP_002994083.1| - 0.00021 21.4 1.0 0.00039 20.5 1.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_23 PF13476.6 gi|242398659|ref|YP_002994083.1| - 0.00023 21.7 7.9 0.065 13.7 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|242398659|ref|YP_002994083.1| - 0.0003 20.6 0.6 0.62 9.7 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.6 gi|242398659|ref|YP_002994083.1| - 0.00035 20.8 0.1 0.44 10.7 0.0 2.9 3 0 0 3 3 2 1 AAA domain RNA_helicase PF00910.22 gi|242398659|ref|YP_002994083.1| - 0.00035 20.9 0.0 1.3 9.5 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.6 gi|242398659|ref|YP_002994083.1| - 0.00052 20.3 0.1 1.3 9.2 0.0 2.9 3 0 0 3 3 2 1 AAA domain Fer4_7 PF12838.7 gi|242398659|ref|YP_002994083.1| - 0.00091 19.8 2.0 0.002 18.6 2.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242398659|ref|YP_002994083.1| - 0.0012 18.9 1.9 0.0025 17.8 1.9 1.5 1 0 0 1 1 1 1 4Fe-4S binding domain AAA_29 PF13555.6 gi|242398659|ref|YP_002994083.1| - 0.0012 18.5 0.1 1.6 8.5 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|242398659|ref|YP_002994083.1| - 0.0013 19.0 0.9 0.43 10.8 0.0 2.9 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|242398659|ref|YP_002994083.1| - 0.0015 18.4 0.5 0.26 11.2 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_14 PF13173.6 gi|242398659|ref|YP_002994083.1| - 0.0016 18.5 0.5 1.4 9.0 0.0 3.5 4 0 0 4 4 3 1 AAA domain RsgA_GTPase PF03193.16 gi|242398659|ref|YP_002994083.1| - 0.0025 17.7 0.0 0.22 11.4 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase SRP54 PF00448.22 gi|242398659|ref|YP_002994083.1| - 0.0028 17.3 1.4 0.43 10.2 0.0 2.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain dNK PF01712.19 gi|242398659|ref|YP_002994083.1| - 0.0041 17.0 0.1 2.3 8.0 0.0 2.4 2 0 0 2 2 2 1 Deoxynucleoside kinase NB-ARC PF00931.22 gi|242398659|ref|YP_002994083.1| - 0.0049 16.1 0.1 0.68 9.1 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain Fer4_16 PF13484.6 gi|242398659|ref|YP_002994083.1| - 0.006 17.5 1.5 0.013 16.4 1.5 1.5 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain PhoH PF02562.16 gi|242398659|ref|YP_002994083.1| - 0.0093 15.4 0.1 3.1 7.2 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein MMR_HSR1 PF01926.23 gi|242398659|ref|YP_002994083.1| - 0.014 15.5 0.6 0.89 9.7 0.0 2.8 3 1 0 3 3 2 0 50S ribosome-binding GTPase AAA_13 PF13166.6 gi|242398659|ref|YP_002994083.1| - 0.018 13.7 0.1 2.9 6.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|242398659|ref|YP_002994083.1| - 0.02 14.9 1.6 1.2 9.1 0.0 3.2 3 1 0 3 3 3 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Fer4_17 PF13534.6 gi|242398659|ref|YP_002994083.1| - 0.022 15.3 0.4 0.047 14.2 0.4 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain VirE PF05272.11 gi|242398659|ref|YP_002994083.1| - 0.038 13.7 0.0 4 7.1 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E AAA_5 PF07728.14 gi|242398659|ref|YP_002994083.1| - 0.039 14.0 0.7 13 5.7 0.0 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|242398659|ref|YP_002994083.1| - 0.039 13.5 0.0 11 5.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region ATP_bind_1 PF03029.17 gi|242398659|ref|YP_002994083.1| - 0.052 13.3 0.2 5.5 6.7 0.1 2.8 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein RNase_Zc3h12a PF11977.8 gi|242398659|ref|YP_002994083.1| - 0.054 13.3 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain RuvB_N PF05496.12 gi|242398659|ref|YP_002994083.1| - 0.071 12.9 0.0 10 5.8 0.0 2.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|242398659|ref|YP_002994083.1| - 0.074 12.6 2.7 8.8 5.9 0.0 3.3 4 0 0 4 4 3 0 AAA domain DLIC PF05783.11 gi|242398659|ref|YP_002994083.1| - 0.076 11.8 0.3 0.6 8.9 0.0 2.0 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) ATPase PF06745.13 gi|242398659|ref|YP_002994083.1| - 0.083 12.2 0.6 3.4 6.9 0.0 2.4 2 0 0 2 2 2 0 KaiC ATPase_2 PF01637.18 gi|242398659|ref|YP_002994083.1| - 0.1 12.5 0.4 5.5 6.8 0.1 2.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Fer4_8 PF13183.6 gi|242398659|ref|YP_002994083.1| - 0.13 12.8 1.3 0.29 11.6 1.3 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain IstB_IS21 PF01695.17 gi|242398659|ref|YP_002994083.1| - 0.15 11.8 0.4 6.8 6.4 0.0 2.9 3 0 0 3 3 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|242398659|ref|YP_002994083.1| - 0.17 12.1 0.2 18 5.6 0.1 3.0 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit MobB PF03205.14 gi|242398659|ref|YP_002994083.1| - 0.2 11.6 1.0 8.3 6.3 0.0 3.0 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|242398659|ref|YP_002994083.1| - 0.27 11.6 4.1 15 5.9 0.0 3.0 3 0 0 3 3 3 0 AAA domain Fer4_4 PF12800.7 gi|242398659|ref|YP_002994083.1| - 0.38 11.4 3.6 0.72 10.5 3.6 1.4 1 0 0 1 1 1 0 4Fe-4S binding domain NTPase_1 PF03266.15 gi|242398659|ref|YP_002994083.1| - 0.39 10.6 5.9 2.5 8.0 0.1 3.4 4 0 0 4 4 3 0 NTPase Fer4_3 PF12798.7 gi|242398659|ref|YP_002994083.1| - 0.54 11.3 5.5 0.98 10.5 5.5 1.4 1 0 0 1 1 1 0 4Fe-4S binding domain DUF87 PF01935.17 gi|242398659|ref|YP_002994083.1| - 0.82 9.7 3.2 4.1 7.4 0.0 3.0 4 0 0 4 4 2 0 Helicase HerA, central domain DEAD PF00270.29 gi|242398661|ref|YP_002994085.1| - 5.7e-22 78.3 0.0 1.3e-21 77.2 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|242398661|ref|YP_002994085.1| - 8.4e-21 74.4 0.0 6.8e-20 71.5 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|242398661|ref|YP_002994085.1| - 3.5e-15 56.5 0.0 9.6e-15 55.1 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|242398661|ref|YP_002994085.1| - 4.5e-09 36.5 0.0 1.3e-08 35.1 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Adeno_IVa2 PF02456.15 gi|242398661|ref|YP_002994085.1| - 0.077 11.8 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein GOLGA2L5 PF15070.6 gi|242398662|ref|YP_002994086.1| - 0.0073 15.0 0.7 0.0085 14.8 0.7 1.2 1 0 0 1 1 1 1 Putative golgin subfamily A member 2-like protein 5 UPF0242 PF06785.11 gi|242398662|ref|YP_002994086.1| - 0.0086 16.2 2.1 0.014 15.5 2.1 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus YabA PF06156.13 gi|242398662|ref|YP_002994086.1| - 0.01 16.5 1.4 0.019 15.6 0.2 1.9 2 0 0 2 2 2 1 Initiation control protein YabA RHH_3 PF12651.7 gi|242398662|ref|YP_002994086.1| - 0.047 13.7 1.0 0.12 12.4 1.0 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix domain ZapB PF06005.12 gi|242398662|ref|YP_002994086.1| - 0.066 13.7 6.9 0.097 13.1 2.2 2.2 2 0 0 2 2 2 0 Cell division protein ZapB DUF572 PF04502.13 gi|242398663|ref|YP_002994087.1| - 0.0025 17.5 15.4 0.0027 17.4 15.4 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF572) DUF1877 PF08974.10 gi|242398663|ref|YP_002994087.1| - 0.02 15.0 1.2 0.02 15.0 1.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1877) RP853 PF17542.2 gi|242398663|ref|YP_002994087.1| - 0.026 13.7 3.0 0.026 13.7 2.5 1.3 1 1 0 1 1 1 0 Uncharacterized RP853 Polysacc_synt_4 PF04669.13 gi|242398663|ref|YP_002994087.1| - 0.046 13.3 2.7 0.049 13.2 2.7 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis Cep57_MT_bd PF06657.13 gi|242398663|ref|YP_002994087.1| - 2 9.0 15.5 2 9.0 13.7 1.9 1 1 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 DUF5446 PF17522.2 gi|242398663|ref|YP_002994087.1| - 2.3 8.4 14.7 0.039 14.1 5.4 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5446) Atg14 PF10186.9 gi|242398663|ref|YP_002994087.1| - 3.3 6.7 11.1 3.3 6.7 11.1 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 EMP24_GP25L PF01105.24 gi|242398663|ref|YP_002994087.1| - 3.9 7.4 6.6 6 6.8 6.6 1.4 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD NBP1 PF08537.10 gi|242398663|ref|YP_002994087.1| - 5.8 6.2 17.5 17 4.7 17.5 1.7 1 1 0 1 1 1 0 Fungal Nap binding protein NBP1 V_ATPase_I PF01496.19 gi|242398663|ref|YP_002994087.1| - 7 4.4 9.9 6.6 4.5 9.9 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF5320 PF17253.2 gi|242398663|ref|YP_002994087.1| - 7.9 7.6 13.1 0.55 11.3 2.3 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5320) Rx_N PF18052.1 gi|242398663|ref|YP_002994087.1| - 9.3 6.6 12.8 2.6 8.4 4.4 2.5 1 1 1 2 2 2 0 Rx N-terminal domain HhH-GPD PF00730.25 gi|242398664|ref|YP_002994088.1| - 8.5e-15 55.1 0.0 1.3e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein DUF2805 PF10985.8 gi|242398665|ref|YP_002994089.1| - 0.038 14.4 0.3 0.068 13.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2805) DUF4423 PF14394.6 gi|242398665|ref|YP_002994089.1| - 0.11 12.2 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) NfeD PF01957.18 gi|242398666|ref|YP_002994090.1| - 1e-18 67.4 1.0 1e-18 67.4 1.0 2.2 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|242398666|ref|YP_002994090.1| - 3.7e-11 43.3 0.2 5.6e-11 42.7 0.2 1.2 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|242398666|ref|YP_002994090.1| - 0.0011 18.0 0.1 0.0022 17.0 0.1 1.5 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Peripla_BP_4 PF13407.6 gi|242398666|ref|YP_002994090.1| - 0.043 13.4 0.1 0.074 12.6 0.1 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain Peptidase_S49 PF01343.18 gi|242398666|ref|YP_002994090.1| - 0.094 12.7 0.2 0.21 11.6 0.2 1.5 1 0 0 1 1 1 0 Peptidase family S49 Band_7 PF01145.25 gi|242398667|ref|YP_002994091.1| - 7.2e-38 130.4 6.4 1e-37 129.9 6.4 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|242398667|ref|YP_002994091.1| - 4.7e-05 23.2 1.5 0.00014 21.7 0.6 2.2 2 1 0 2 2 2 1 SPFH domain-Band 7 family DUF4083 PF13314.6 gi|242398667|ref|YP_002994091.1| - 2.3 8.2 6.7 0.21 11.5 1.2 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4083) CbiA PF01656.23 gi|242398668|ref|YP_002994092.1| - 2.6e-23 82.5 0.4 4.1e-23 81.8 0.4 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|242398668|ref|YP_002994092.1| - 1.8e-21 76.9 0.2 2.6e-21 76.3 0.2 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|242398668|ref|YP_002994092.1| - 3.3e-18 66.0 2.9 9.5e-18 64.5 2.9 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|242398668|ref|YP_002994092.1| - 1.7e-12 47.3 0.4 5.1e-07 29.4 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|242398668|ref|YP_002994092.1| - 7.2e-10 38.7 0.0 1.1e-09 38.1 0.0 1.4 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|242398668|ref|YP_002994092.1| - 1.6e-09 37.5 0.7 2.8e-08 33.4 0.7 2.1 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|242398668|ref|YP_002994092.1| - 5e-07 29.2 1.8 5.8e-07 29.0 0.3 1.8 2 1 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|242398668|ref|YP_002994092.1| - 0.0005 19.4 0.2 0.0011 18.4 0.2 1.4 1 0 0 1 1 1 1 VirC1 protein AAA_26 PF13500.6 gi|242398668|ref|YP_002994092.1| - 0.0006 19.7 0.6 0.0006 19.7 0.6 1.9 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|242398668|ref|YP_002994092.1| - 0.0069 16.1 0.3 0.012 15.3 0.3 1.4 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|242398668|ref|YP_002994092.1| - 0.036 13.7 0.7 0.08 12.6 0.3 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|242398668|ref|YP_002994092.1| - 0.09 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase HU-DNA_bdg PF14848.6 gi|242398668|ref|YP_002994092.1| - 0.096 12.7 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 DNA-binding domain PspB PF06667.12 gi|242398669|ref|YP_002994093.1| - 0.014 15.4 2.0 0.024 14.7 2.0 1.6 1 1 0 1 1 1 0 Phage shock protein B Ac76 PF05814.11 gi|242398669|ref|YP_002994093.1| - 0.021 14.8 0.6 0.026 14.5 0.6 1.2 1 0 0 1 1 1 0 Orf76 (Ac76) Sigma_reg_N PF13800.6 gi|242398669|ref|YP_002994093.1| - 0.11 12.7 0.7 0.15 12.4 0.7 1.2 1 0 0 1 1 1 0 Sigma factor regulator N-terminal Glycos_trans_3N PF02885.17 gi|242398670|ref|YP_002994094.1| - 1.3e-14 53.7 0.1 3.6e-14 52.3 0.1 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.13 gi|242398670|ref|YP_002994094.1| - 3.6e-14 52.2 0.1 1.3e-13 50.4 0.1 2.0 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.21 gi|242398670|ref|YP_002994094.1| - 5.3e-14 52.4 1.1 2.7e-13 50.1 1.1 2.0 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain DUF2254 PF10011.9 gi|242398670|ref|YP_002994094.1| - 1.6e-05 23.9 0.1 2.4e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Molydop_binding PF01568.21 gi|242398670|ref|YP_002994094.1| - 6.5e-05 22.9 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|242398670|ref|YP_002994094.1| - 0.0013 18.9 1.7 0.0024 18.0 0.0 2.4 3 0 0 3 3 3 1 Cell division protein 48 (CDC48), N-terminal domain DUF2095 PF09868.9 gi|242398671|ref|YP_002994095.1| - 4.9e-55 185.0 7.7 6e-55 184.7 7.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) DUF1702 PF08012.11 gi|242398671|ref|YP_002994095.1| - 0.11 11.4 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1702) DUF123 PF01986.16 gi|242398672|ref|YP_002994096.1| - 4.7e-21 75.1 0.0 6.5e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.24 gi|242398672|ref|YP_002994096.1| - 0.0028 17.9 0.1 0.0063 16.8 0.1 1.7 1 0 0 1 1 1 1 GIY-YIG catalytic domain PcrB PF01884.17 gi|242398673|ref|YP_002994097.1| - 2.3e-65 220.2 0.0 2.8e-65 219.9 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|242398673|ref|YP_002994097.1| - 7.5e-09 35.4 0.1 3.1e-08 33.4 0.1 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|242398673|ref|YP_002994097.1| - 1.3e-08 34.5 0.5 5.6e-06 25.8 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|242398673|ref|YP_002994097.1| - 1.7e-06 27.1 0.6 4.7e-05 22.4 0.4 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain NanE PF04131.14 gi|242398673|ref|YP_002994097.1| - 3.7e-05 23.0 0.2 0.0067 15.6 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|242398673|ref|YP_002994097.1| - 5.6e-05 22.5 0.3 0.00012 21.4 0.2 1.5 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|242398673|ref|YP_002994097.1| - 7.3e-05 22.0 0.1 0.0011 18.1 0.1 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|242398673|ref|YP_002994097.1| - 0.00014 21.4 0.7 0.00033 20.1 0.2 1.8 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|242398673|ref|YP_002994097.1| - 0.00016 20.8 0.2 0.0094 15.0 0.1 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain BtpA PF03437.15 gi|242398673|ref|YP_002994097.1| - 0.0007 19.1 0.7 0.012 15.1 0.2 2.1 2 0 0 2 2 2 1 BtpA family NMO PF03060.15 gi|242398673|ref|YP_002994097.1| - 0.0041 16.6 2.0 0.011 15.1 0.3 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase TMP-TENI PF02581.17 gi|242398673|ref|YP_002994097.1| - 0.0081 15.5 0.7 0.018 14.4 0.3 1.7 2 0 0 2 2 2 1 Thiamine monophosphate synthase FMN_dh PF01070.18 gi|242398673|ref|YP_002994097.1| - 0.011 14.8 0.4 0.039 13.0 0.0 1.8 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Ribul_P_3_epim PF00834.19 gi|242398673|ref|YP_002994097.1| - 0.026 13.9 0.2 0.048 13.0 0.2 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DAGK_cat PF00781.24 gi|242398673|ref|YP_002994097.1| - 0.037 13.6 0.0 0.09 12.4 0.0 1.6 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain OMPdecase PF00215.24 gi|242398673|ref|YP_002994097.1| - 0.039 13.5 0.0 0.042 13.4 0.0 1.3 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PEP_hydrolase PF09370.10 gi|242398673|ref|YP_002994097.1| - 0.046 12.9 0.0 0.081 12.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like Peptidase_M55 PF04951.13 gi|242398674|ref|YP_002994098.1| - 5.4e-77 258.8 0.0 6.1e-77 258.6 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase Creatininase PF02633.14 gi|242398674|ref|YP_002994098.1| - 0.15 11.5 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Creatinine amidohydrolase EFG_C PF00679.24 gi|242398675|ref|YP_002994099.1| - 0.0067 16.4 0.1 0.0092 16.0 0.1 1.1 1 0 0 1 1 1 1 Elongation factor G C-terminus zf-ZPR1 PF03367.13 gi|242398675|ref|YP_002994099.1| - 0.068 13.0 0.6 0.082 12.8 0.6 1.0 1 0 0 1 1 1 0 ZPR1 zinc-finger domain ERCC4 PF02732.15 gi|242398676|ref|YP_002994100.1| - 6.9e-29 101.1 0.0 1.7e-28 99.8 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.31 gi|242398676|ref|YP_002994100.1| - 8.2e-27 93.8 0.8 4.1e-24 85.1 0.0 3.1 3 0 0 3 3 3 2 Helicase conserved C-terminal domain DEAD PF00270.29 gi|242398676|ref|YP_002994100.1| - 5.8e-19 68.5 0.7 5.6e-17 62.1 0.0 3.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|242398676|ref|YP_002994100.1| - 1.6e-17 64.0 0.0 1.9e-16 60.5 0.0 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|242398676|ref|YP_002994100.1| - 2e-10 40.6 0.1 6.2e-10 39.0 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|242398676|ref|YP_002994100.1| - 1.1e-05 25.9 1.6 2.4e-05 24.8 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|242398676|ref|YP_002994100.1| - 0.00026 20.7 0.1 0.00077 19.2 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif ERCC3_RAD25_C PF16203.5 gi|242398676|ref|YP_002994100.1| - 0.013 14.8 1.9 0.072 12.3 1.9 2.2 1 1 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase HHH_3 PF12836.7 gi|242398676|ref|YP_002994100.1| - 0.021 15.1 0.1 0.25 11.6 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif MRP-S28 PF10213.9 gi|242398676|ref|YP_002994100.1| - 0.13 12.6 1.8 1.1 9.7 0.4 2.7 2 1 0 2 2 2 0 Mitochondrial ribosomal subunit protein DUF134 PF02001.16 gi|242398677|ref|YP_002994101.1| - 4.4e-26 91.3 0.0 5.1e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4 PF04545.16 gi|242398677|ref|YP_002994101.1| - 5.1e-09 35.5 0.1 7.4e-09 35.0 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|242398677|ref|YP_002994101.1| - 1.7e-08 34.0 0.1 2.4e-08 33.5 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|242398677|ref|YP_002994101.1| - 1.5e-05 24.6 0.0 2.4e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|242398677|ref|YP_002994101.1| - 0.00015 21.7 0.2 0.00018 21.4 0.2 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_31 PF13560.6 gi|242398677|ref|YP_002994101.1| - 0.00052 20.3 0.0 0.00053 20.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|242398677|ref|YP_002994101.1| - 0.0067 16.3 0.1 0.0084 16.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.12 gi|242398677|ref|YP_002994101.1| - 0.011 15.6 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_38 PF13936.6 gi|242398677|ref|YP_002994101.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|242398677|ref|YP_002994101.1| - 0.02 14.4 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|242398677|ref|YP_002994101.1| - 0.021 14.9 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_Crp_2 PF13545.6 gi|242398677|ref|YP_002994101.1| - 0.027 14.5 0.1 0.037 14.0 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|242398677|ref|YP_002994101.1| - 0.054 13.2 0.0 0.071 12.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_28 PF13518.6 gi|242398677|ref|YP_002994101.1| - 0.056 13.6 0.1 0.12 12.6 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|242398677|ref|YP_002994101.1| - 0.088 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 MarR family TnsD PF15978.5 gi|242398677|ref|YP_002994101.1| - 0.18 10.8 0.0 0.21 10.5 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_29 PF13551.6 gi|242398677|ref|YP_002994101.1| - 0.23 11.5 0.2 0.23 11.5 0.2 1.5 2 0 0 2 2 2 0 Winged helix-turn helix TBPIP PF07106.13 gi|242398679|ref|YP_002994103.1| - 0.0072 16.2 0.1 0.0094 15.9 0.1 1.2 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain CbiA PF01656.23 gi|242398680|ref|YP_002994104.1| - 2.5e-20 72.8 0.0 3.2e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|242398680|ref|YP_002994104.1| - 1.1e-15 57.8 0.1 2.6e-08 33.6 0.0 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|242398680|ref|YP_002994104.1| - 4.8e-11 42.0 20.1 2.5e-06 27.1 7.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|242398680|ref|YP_002994104.1| - 1.5e-10 41.1 13.8 1.5e-10 41.1 13.8 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242398680|ref|YP_002994104.1| - 4.1e-08 32.9 12.6 0.00031 20.7 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|242398680|ref|YP_002994104.1| - 2.1e-07 31.7 7.5 0.0024 18.7 0.0 2.5 1 1 0 2 2 2 2 4Fe-4S double cluster binding domain AAA_31 PF13614.6 gi|242398680|ref|YP_002994104.1| - 5.8e-07 29.6 0.0 0.00038 20.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_17 PF13534.6 gi|242398680|ref|YP_002994104.1| - 7.9e-07 29.5 3.2 0.0063 17.0 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|242398680|ref|YP_002994104.1| - 9.2e-07 29.4 27.4 9e-06 26.2 14.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242398680|ref|YP_002994104.1| - 1.3e-06 28.4 13.0 0.00067 19.7 15.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_26 PF13500.6 gi|242398680|ref|YP_002994104.1| - 3.9e-05 23.6 0.1 0.046 13.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_9 PF13187.6 gi|242398680|ref|YP_002994104.1| - 0.00012 22.1 14.1 0.0016 18.6 14.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_NifH PF00142.18 gi|242398680|ref|YP_002994104.1| - 0.00021 20.8 0.0 0.063 12.7 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|242398680|ref|YP_002994104.1| - 0.00056 19.5 0.0 0.3 10.5 0.0 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|242398680|ref|YP_002994104.1| - 0.00098 18.4 0.0 0.0019 17.5 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_6 PF12837.7 gi|242398680|ref|YP_002994104.1| - 0.0042 17.1 17.5 0.074 13.2 7.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|242398680|ref|YP_002994104.1| - 0.02 15.4 13.5 0.58 10.7 5.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|242398680|ref|YP_002994104.1| - 0.036 14.5 13.5 1.1 9.7 4.9 2.3 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|242398680|ref|YP_002994104.1| - 0.038 14.7 7.5 3.1 8.6 0.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|242398680|ref|YP_002994104.1| - 0.041 14.4 13.5 0.088 13.4 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF4088 PF13317.6 gi|242398680|ref|YP_002994104.1| - 0.055 13.0 0.0 0.074 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) GTP_EFTU PF00009.27 gi|242398680|ref|YP_002994104.1| - 0.16 11.5 0.0 0.44 10.1 0.0 1.7 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Fer4_22 PF17179.4 gi|242398680|ref|YP_002994104.1| - 1.4 9.8 13.5 10 7.1 3.5 2.4 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|242398680|ref|YP_002994104.1| - 1.6 9.8 21.1 2.1 9.5 6.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain CbiA PF01656.23 gi|242398681|ref|YP_002994105.1| - 2.4e-19 69.7 0.0 5.4e-19 68.5 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|242398681|ref|YP_002994105.1| - 4.5e-15 55.8 1.4 3.9e-09 36.3 0.1 3.1 2 2 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_6 PF12837.7 gi|242398681|ref|YP_002994105.1| - 1.5e-10 40.7 11.2 1.3e-05 25.1 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|242398681|ref|YP_002994105.1| - 3.3e-09 36.2 13.2 1.5e-05 24.6 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|242398681|ref|YP_002994105.1| - 9.8e-08 32.0 9.1 1.7e-07 31.3 9.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_NifH PF00142.18 gi|242398681|ref|YP_002994105.1| - 2.9e-07 30.2 0.3 0.0054 16.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_9 PF13187.6 gi|242398681|ref|YP_002994105.1| - 6e-07 29.5 7.7 1.1e-06 28.7 7.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|242398681|ref|YP_002994105.1| - 3.5e-05 24.3 3.2 0.087 13.4 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|242398681|ref|YP_002994105.1| - 6.3e-05 23.5 13.0 0.0003 21.3 13.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|242398681|ref|YP_002994105.1| - 7e-05 23.0 11.7 0.0047 17.3 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|242398681|ref|YP_002994105.1| - 7.5e-05 23.1 5.4 0.02 15.3 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|242398681|ref|YP_002994105.1| - 0.00011 22.1 0.4 0.0011 19.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain Fer4_16 PF13484.6 gi|242398681|ref|YP_002994105.1| - 0.00021 22.2 11.2 0.048 14.6 4.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|242398681|ref|YP_002994105.1| - 0.00023 21.1 11.5 0.021 14.9 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain MipZ PF09140.11 gi|242398681|ref|YP_002994105.1| - 0.00098 18.5 0.0 0.0018 17.6 0.0 1.5 1 0 0 1 1 1 1 ATPase MipZ Fer4_10 PF13237.6 gi|242398681|ref|YP_002994105.1| - 0.0013 18.8 14.3 0.033 14.3 15.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain CBP_BcsQ PF06564.12 gi|242398681|ref|YP_002994105.1| - 0.0043 16.6 0.0 0.22 10.9 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|242398681|ref|YP_002994105.1| - 0.0054 15.9 2.0 0.088 12.0 0.2 2.4 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|242398681|ref|YP_002994105.1| - 0.037 13.6 0.0 0.1 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|242398681|ref|YP_002994105.1| - 0.11 12.0 0.4 1.4 8.3 0.2 2.2 2 0 0 2 2 2 0 PhoH-like protein Fer4_22 PF17179.4 gi|242398681|ref|YP_002994105.1| - 0.42 11.5 6.7 2.4 9.1 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|242398681|ref|YP_002994105.1| - 0.72 10.9 16.2 1.6 9.9 4.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|242398681|ref|YP_002994105.1| - 7.4 7.2 10.9 9.2 6.9 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DUF364 PF04016.12 gi|242398682|ref|YP_002994106.1| - 5.1e-32 110.5 0.0 6.3e-32 110.2 0.0 1.0 1 0 0 1 1 1 1 Putative heavy-metal chelation DNA_photolyase PF00875.18 gi|242398682|ref|YP_002994106.1| - 0.18 11.8 0.0 0.88 9.6 0.0 1.8 2 0 0 2 2 2 0 DNA photolyase CorA PF01544.18 gi|242398683|ref|YP_002994107.1| - 1.2e-78 264.5 1.7 1.5e-78 264.1 1.7 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Pyr_excise PF03013.14 gi|242398684|ref|YP_002994108.1| - 0.0014 18.6 0.0 0.003 17.5 0.0 1.6 1 1 0 1 1 1 1 Pyrimidine dimer DNA glycosylase Methyltransf_11 PF08241.12 gi|242398685|ref|YP_002994109.1| - 1.5e-18 67.2 0.0 2.3e-18 66.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|242398685|ref|YP_002994109.1| - 1.5e-12 48.1 0.0 2.4e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|242398685|ref|YP_002994109.1| - 5.8e-11 42.5 0.0 7.8e-11 42.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|242398685|ref|YP_002994109.1| - 3.3e-09 36.4 0.0 4.4e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|242398685|ref|YP_002994109.1| - 1.4e-07 32.2 0.0 3e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|242398685|ref|YP_002994109.1| - 1.6e-05 24.8 0.0 1.9e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|242398685|ref|YP_002994109.1| - 6.4e-05 22.9 0.0 0.00011 22.2 0.0 1.5 1 1 1 2 2 2 1 Hypothetical methyltransferase MetW PF07021.12 gi|242398685|ref|YP_002994109.1| - 8.8e-05 22.2 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Radical_SAM PF04055.21 gi|242398686|ref|YP_002994110.1| - 7e-12 46.0 0.1 1.1e-11 45.4 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF4600 PF15372.6 gi|242398686|ref|YP_002994110.1| - 0.06 13.8 0.0 0.14 12.6 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4600) Hydrolase_6 PF13344.6 gi|242398686|ref|YP_002994110.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Nitro_FeMo-Co PF02579.17 gi|242398687|ref|YP_002994111.1| - 5.3e-23 81.2 0.2 6.7e-23 80.8 0.2 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Keratin_2_head PF16208.5 gi|242398687|ref|YP_002994111.1| - 1.3 9.2 14.3 0.38 10.9 10.2 1.9 2 0 0 2 2 2 0 Keratin type II head Nitro_FeMo-Co PF02579.17 gi|242398689|ref|YP_002994113.1| - 2.3e-24 85.5 0.1 3.1e-24 85.1 0.1 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Lactamase_B PF00753.27 gi|242398691|ref|YP_002994115.1| - 5.4e-19 69.0 0.9 2e-18 67.1 0.6 1.9 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|242398691|ref|YP_002994115.1| - 5.3e-12 45.7 0.0 1.1e-11 44.7 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|242398691|ref|YP_002994115.1| - 3.8e-05 23.2 0.0 5.1e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|242398691|ref|YP_002994115.1| - 0.00023 21.1 0.0 0.00041 20.3 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain adh_short_C2 PF13561.6 gi|242398692|ref|YP_002994116.1| - 7.4e-49 166.4 0.0 1.1e-48 165.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|242398692|ref|YP_002994116.1| - 5.3e-35 120.6 0.0 6.4e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|242398692|ref|YP_002994116.1| - 2.3e-06 27.7 0.0 4e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|242398692|ref|YP_002994116.1| - 1.2e-05 25.3 0.0 1.6e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|242398692|ref|YP_002994116.1| - 0.00012 22.0 0.0 0.00025 21.0 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ubie_methyltran PF01209.18 gi|242398692|ref|YP_002994116.1| - 0.0041 16.5 0.1 0.039 13.3 0.1 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family ADH_zinc_N PF00107.26 gi|242398692|ref|YP_002994116.1| - 0.015 15.2 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_25 PF13649.6 gi|242398692|ref|YP_002994116.1| - 0.016 15.9 0.0 0.15 12.8 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|242398692|ref|YP_002994116.1| - 0.017 15.7 0.0 0.19 12.4 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Glyco_tran_WecB PF03808.13 gi|242398692|ref|YP_002994116.1| - 0.018 15.0 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family Polysacc_synt_2 PF02719.15 gi|242398692|ref|YP_002994116.1| - 0.031 13.4 0.1 0.047 12.8 0.1 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein F420_oxidored PF03807.17 gi|242398692|ref|YP_002994116.1| - 0.034 14.7 0.2 0.13 12.9 0.1 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|242398692|ref|YP_002994116.1| - 0.047 13.3 0.0 0.073 12.6 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1776 PF08643.10 gi|242398692|ref|YP_002994116.1| - 0.071 12.5 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) QRPTase_C PF01729.19 gi|242398692|ref|YP_002994116.1| - 0.11 12.3 0.1 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain NmrA PF05368.13 gi|242398692|ref|YP_002994116.1| - 0.12 11.9 0.0 1.9 8.0 0.0 2.2 2 1 0 2 2 2 0 NmrA-like family SMC_ScpB PF04079.16 gi|242398694|ref|YP_002994118.1| - 1.2e-35 122.4 2.8 3e-35 121.2 1.0 1.9 1 1 1 2 2 2 1 Segregation and condensation complex subunit ScpB TrmB PF01978.19 gi|242398694|ref|YP_002994118.1| - 0.0005 19.9 0.9 0.009 15.9 0.1 2.5 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|242398694|ref|YP_002994118.1| - 0.0014 18.8 0.2 0.12 12.6 0.1 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|242398694|ref|YP_002994118.1| - 0.0032 17.0 0.1 0.76 9.4 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|242398694|ref|YP_002994118.1| - 0.013 15.4 0.1 0.74 9.7 0.1 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|242398694|ref|YP_002994118.1| - 0.015 15.8 0.3 0.58 10.7 0.1 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF4777 PF16007.5 gi|242398694|ref|YP_002994118.1| - 0.035 14.4 0.0 4.4 7.6 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4777) MarR PF01047.22 gi|242398694|ref|YP_002994118.1| - 0.047 13.6 0.2 1 9.4 0.1 2.6 2 1 0 2 2 2 0 MarR family LexA_DNA_bind PF01726.16 gi|242398694|ref|YP_002994118.1| - 0.086 12.6 0.0 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain HTH_20 PF12840.7 gi|242398694|ref|YP_002994118.1| - 0.13 12.4 0.0 2 8.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain tRNA_anti-codon PF01336.25 gi|242398695|ref|YP_002994119.1| - 1.5e-13 50.5 0.8 3.5e-09 36.5 0.1 2.8 3 0 0 3 3 3 2 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.10 gi|242398695|ref|YP_002994119.1| - 4.1e-10 39.6 0.0 1.1e-09 38.2 0.0 1.8 2 0 0 2 2 2 1 Replication factor-A C terminal domain DUF2240 PF09999.9 gi|242398695|ref|YP_002994119.1| - 0.00021 20.9 0.4 0.00053 19.6 0.4 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) CDC24_OB3 PF17244.2 gi|242398695|ref|YP_002994119.1| - 0.00043 20.1 0.0 0.0023 17.7 0.0 1.9 2 0 0 2 2 2 1 Cell division control protein 24, OB domain 3 DUF2396 PF09654.10 gi|242398695|ref|YP_002994119.1| - 0.011 15.8 0.1 0.028 14.5 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) DUF4777 PF16007.5 gi|242398695|ref|YP_002994119.1| - 0.015 15.5 2.1 0.07 13.4 0.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) DUF5521 PF17659.1 gi|242398695|ref|YP_002994119.1| - 0.027 12.3 0.0 0.037 11.9 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5521) SPAM PF02090.15 gi|242398695|ref|YP_002994119.1| - 0.046 13.5 3.4 0.069 13.0 0.2 2.1 2 0 0 2 2 2 0 Salmonella surface presentation of antigen gene type M protein Glycos_trans_3N PF02885.17 gi|242398695|ref|YP_002994119.1| - 0.062 13.2 0.3 0.14 12.0 0.3 1.6 1 0 0 1 1 1 0 Glycosyl transferase family, helical bundle domain Bac_DNA_binding PF00216.21 gi|242398695|ref|YP_002994119.1| - 0.099 12.9 0.5 0.25 11.6 0.5 1.7 1 0 0 1 1 1 0 Bacterial DNA-binding protein DUF2250 PF10007.9 gi|242398695|ref|YP_002994119.1| - 0.12 12.4 0.4 4.5 7.4 0.0 2.9 4 0 0 4 4 3 0 Uncharacterized protein conserved in archaea (DUF2250) Rep_fac-A_3 PF08661.11 gi|242398696|ref|YP_002994120.1| - 3.1e-05 24.3 0.2 3.7e-05 24.0 0.2 1.1 1 0 0 1 1 1 1 Replication factor A protein 3 RMI2 PF16100.5 gi|242398696|ref|YP_002994120.1| - 0.00024 20.9 0.0 0.00027 20.7 0.0 1.1 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 BOF PF04076.13 gi|242398696|ref|YP_002994120.1| - 0.0027 17.7 1.2 0.0054 16.8 1.2 1.4 1 1 0 1 1 1 1 Bacterial OB fold (BOF) protein tRNA_anti-codon PF01336.25 gi|242398696|ref|YP_002994120.1| - 0.086 12.8 2.3 0.18 11.8 2.3 1.8 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|242398697|ref|YP_002994121.1| - 1.8e-08 34.2 2.3 3.9e-08 33.2 2.3 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RPA_C PF08784.11 gi|242398697|ref|YP_002994121.1| - 0.0013 19.4 0.0 0.0029 18.3 0.0 1.5 1 1 0 1 1 1 1 Replication protein A C terminal KfrA_N PF11740.8 gi|242398697|ref|YP_002994121.1| - 0.025 15.3 1.2 0.16 12.7 0.5 2.1 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term Hrs_helical PF12210.8 gi|242398697|ref|YP_002994121.1| - 0.027 15.0 0.4 1.2 9.7 0.0 2.4 2 0 0 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate RMI2 PF16100.5 gi|242398697|ref|YP_002994121.1| - 0.048 13.5 0.0 0.089 12.6 0.0 1.4 1 0 0 1 1 1 0 RecQ-mediated genome instability protein 2 Nrf1_DNA-bind PF10491.9 gi|242398698|ref|YP_002994122.1| - 0.065 12.9 0.0 0.089 12.5 0.0 1.1 1 0 0 1 1 1 0 NLS-binding and DNA-binding and dimerisation domains of Nrf1 UbiA PF01040.18 gi|242398699|ref|YP_002994123.1| - 6.9e-44 150.0 11.5 8.3e-44 149.8 11.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family TraL PF07178.11 gi|242398699|ref|YP_002994123.1| - 0.17 12.3 0.2 0.17 12.3 0.2 2.8 2 1 1 3 3 3 0 TraL protein CLP1_P PF16575.5 gi|242398700|ref|YP_002994124.1| - 5.3e-41 140.5 0.0 7.5e-41 140.0 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MobB PF03205.14 gi|242398700|ref|YP_002994124.1| - 0.00086 19.2 0.1 0.0021 18.0 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MipZ PF09140.11 gi|242398700|ref|YP_002994124.1| - 0.0014 18.0 0.7 0.0052 16.1 0.1 2.2 2 1 0 2 2 2 1 ATPase MipZ ParA PF10609.9 gi|242398700|ref|YP_002994124.1| - 0.007 15.8 0.4 0.007 15.8 0.4 1.6 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|242398700|ref|YP_002994124.1| - 0.0088 16.1 0.6 0.017 15.2 0.4 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|242398700|ref|YP_002994124.1| - 0.0089 16.0 0.1 0.026 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain GTP_EFTU PF00009.27 gi|242398700|ref|YP_002994124.1| - 0.021 14.4 0.5 0.36 10.4 0.1 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain SRP54 PF00448.22 gi|242398700|ref|YP_002994124.1| - 0.025 14.2 0.6 2.6 7.6 0.1 2.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|242398700|ref|YP_002994124.1| - 0.027 14.3 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase NTPase_1 PF03266.15 gi|242398700|ref|YP_002994124.1| - 0.031 14.2 2.8 0.13 12.2 2.6 2.0 1 1 0 1 1 1 0 NTPase PduV-EutP PF10662.9 gi|242398700|ref|YP_002994124.1| - 0.032 14.0 0.1 0.086 12.6 0.1 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|242398700|ref|YP_002994124.1| - 0.14 11.6 1.3 1.1 8.7 0.1 2.4 2 0 0 2 2 2 0 ADP-ribosylation factor family MMR_HSR1 PF01926.23 gi|242398700|ref|YP_002994124.1| - 0.14 12.2 1.6 15 5.7 0.1 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase LpxK PF02606.14 gi|242398700|ref|YP_002994124.1| - 0.15 11.1 0.6 0.3 10.1 0.2 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase DUF3323 PF11796.8 gi|242398700|ref|YP_002994124.1| - 0.58 10.0 1.8 2.9 7.7 1.9 1.8 1 1 0 2 2 2 0 Protein of unknown function N-terminus (DUF3323) MarR_2 PF12802.7 gi|242398701|ref|YP_002994125.1| - 2.5e-08 33.7 0.0 4.4e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 MarR family AsnC_trans_reg PF01037.21 gi|242398701|ref|YP_002994125.1| - 3.5e-08 33.3 0.8 8.2e-08 32.1 0.8 1.6 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_Crp_2 PF13545.6 gi|242398701|ref|YP_002994125.1| - 8.5e-08 32.1 2.8 1.4e-07 31.4 0.2 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|242398701|ref|YP_002994125.1| - 8.2e-07 28.9 0.6 5.2e-06 26.3 0.6 2.3 1 1 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|242398701|ref|YP_002994125.1| - 2.8e-06 27.3 0.1 7.9e-06 25.8 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|242398701|ref|YP_002994125.1| - 4.4e-06 26.4 0.4 1.3e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|242398701|ref|YP_002994125.1| - 5.4e-06 25.9 0.1 1.1e-05 24.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|242398701|ref|YP_002994125.1| - 7.3e-06 25.8 0.5 1.6e-05 24.7 0.5 1.5 1 1 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|242398701|ref|YP_002994125.1| - 0.0001 22.0 0.1 0.00023 20.8 0.1 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_34 PF13601.6 gi|242398701|ref|YP_002994125.1| - 0.0012 18.9 0.0 0.0026 17.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|242398701|ref|YP_002994125.1| - 0.0014 19.0 0.2 0.0041 17.4 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator Sigma70_r4 PF04545.16 gi|242398701|ref|YP_002994125.1| - 0.0021 17.5 0.1 0.0092 15.5 0.1 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|242398701|ref|YP_002994125.1| - 0.0049 16.7 0.4 0.18 11.7 0.0 2.6 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB TxDE PF18711.1 gi|242398701|ref|YP_002994125.1| - 0.0098 16.0 0.1 0.025 14.7 0.1 1.7 1 1 0 1 1 1 1 Toxoflavin-degrading enzyme HTH_27 PF13463.6 gi|242398701|ref|YP_002994125.1| - 0.011 16.3 0.7 0.026 15.0 0.2 2.0 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|242398701|ref|YP_002994125.1| - 0.018 14.9 2.1 0.19 11.6 0.1 2.6 3 0 0 3 3 2 0 HTH DNA binding domain HTH_IclR PF09339.10 gi|242398701|ref|YP_002994125.1| - 0.024 14.4 0.0 0.065 13.0 0.0 1.8 2 0 0 2 2 1 0 IclR helix-turn-helix domain GerE PF00196.19 gi|242398701|ref|YP_002994125.1| - 0.033 13.7 0.8 0.94 9.1 0.8 2.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family UPF0122 PF04297.14 gi|242398701|ref|YP_002994125.1| - 0.037 14.3 3.5 0.066 13.4 0.4 2.6 2 2 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_36 PF13730.6 gi|242398701|ref|YP_002994125.1| - 0.044 13.7 1.5 0.048 13.6 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain AAA_assoc_C PF09821.9 gi|242398701|ref|YP_002994125.1| - 0.052 14.1 0.3 0.09 13.3 0.3 1.7 1 1 0 1 1 1 0 C-terminal AAA-associated domain HTH_7 PF02796.15 gi|242398701|ref|YP_002994125.1| - 0.056 13.5 2.4 0.47 10.6 0.3 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase AbiEii PF08843.11 gi|242398701|ref|YP_002994125.1| - 0.058 13.3 0.4 0.11 12.5 0.1 1.6 2 0 0 2 2 2 0 Nucleotidyl transferase AbiEii toxin, Type IV TA system HTH_CodY PF08222.11 gi|242398701|ref|YP_002994125.1| - 0.062 12.9 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_23 PF13384.6 gi|242398701|ref|YP_002994125.1| - 0.095 12.5 0.0 0.26 11.1 0.0 1.8 1 1 0 1 1 1 0 Homeodomain-like domain HTH_40 PF14493.6 gi|242398701|ref|YP_002994125.1| - 0.12 12.9 2.4 0.57 10.7 2.4 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain Mrr_N PF14338.6 gi|242398701|ref|YP_002994125.1| - 0.13 12.4 2.9 8.1 6.7 0.0 3.1 2 1 1 3 3 3 0 Mrr N-terminal domain MMR_HSR1 PF01926.23 gi|242398702|ref|YP_002994126.1| - 1.9e-17 63.4 0.0 2.8e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|242398702|ref|YP_002994126.1| - 2.5e-11 43.4 0.5 3e-10 39.8 0.5 2.2 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|242398702|ref|YP_002994126.1| - 5.2e-08 32.7 0.1 3.4e-06 26.7 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|242398702|ref|YP_002994126.1| - 1.4e-05 25.1 2.0 0.02 14.8 0.3 2.9 2 1 0 2 2 2 2 RsgA GTPase Ras PF00071.22 gi|242398702|ref|YP_002994126.1| - 0.00039 20.0 0.1 0.16 11.6 0.0 2.3 2 1 0 2 2 2 2 Ras family SRPRB PF09439.10 gi|242398702|ref|YP_002994126.1| - 0.0035 16.8 0.3 0.015 14.8 0.3 2.2 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|242398702|ref|YP_002994126.1| - 0.007 16.4 2.0 0.041 13.9 0.6 2.6 2 1 1 3 3 3 1 Dynamin family MeaB PF03308.16 gi|242398702|ref|YP_002994126.1| - 0.0071 15.4 0.8 0.47 9.4 0.1 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Roc PF08477.13 gi|242398702|ref|YP_002994126.1| - 0.0076 16.5 0.7 0.065 13.5 0.0 2.5 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase MobB PF03205.14 gi|242398702|ref|YP_002994126.1| - 0.021 14.7 0.1 0.038 13.9 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AIG1 PF04548.16 gi|242398702|ref|YP_002994126.1| - 0.032 13.5 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 AIG1 family PduV-EutP PF10662.9 gi|242398702|ref|YP_002994126.1| - 0.039 13.7 0.6 0.44 10.3 0.1 2.3 1 1 1 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 gi|242398702|ref|YP_002994126.1| - 0.051 13.4 0.3 0.84 9.4 0.0 2.4 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein MMR_HSR1_Xtn PF16897.5 gi|242398702|ref|YP_002994126.1| - 0.06 13.4 0.8 0.1 12.6 0.1 1.7 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain UPF0242 PF06785.11 gi|242398703|ref|YP_002994127.1| - 0.00031 20.9 5.6 0.00041 20.5 5.6 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus CENP-H PF05837.12 gi|242398703|ref|YP_002994127.1| - 0.0025 18.2 6.9 0.0045 17.4 6.9 1.4 1 0 0 1 1 1 1 Centromere protein H (CENP-H) GAS PF13851.6 gi|242398703|ref|YP_002994127.1| - 0.0053 16.1 13.5 0.0072 15.7 13.5 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding ANAPC4 PF12896.7 gi|242398703|ref|YP_002994127.1| - 0.0062 16.1 4.2 0.044 13.3 4.2 2.0 1 1 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 4 V_ATPase_I PF01496.19 gi|242398703|ref|YP_002994127.1| - 0.014 13.4 2.3 0.016 13.1 2.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family SHE3 PF17078.5 gi|242398703|ref|YP_002994127.1| - 0.028 14.1 11.7 0.054 13.2 11.7 1.4 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 Phage_GP20 PF06810.11 gi|242398703|ref|YP_002994127.1| - 0.041 13.7 11.3 0.3 10.9 1.9 2.4 1 1 1 2 2 2 0 Phage minor structural protein GP20 NAPRTase_N PF17767.1 gi|242398703|ref|YP_002994127.1| - 0.043 14.2 0.5 0.073 13.5 0.5 1.4 1 0 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Dynamitin PF04912.14 gi|242398703|ref|YP_002994127.1| - 0.062 12.6 9.8 0.045 13.1 7.8 1.7 1 1 0 2 2 2 0 Dynamitin DUF3450 PF11932.8 gi|242398703|ref|YP_002994127.1| - 0.077 12.3 8.5 0.33 10.2 8.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) PCRF PF03462.18 gi|242398703|ref|YP_002994127.1| - 0.077 12.9 6.6 0.14 12.0 6.6 1.5 1 0 0 1 1 1 0 PCRF domain Foie-gras_1 PF11817.8 gi|242398703|ref|YP_002994127.1| - 0.084 12.5 0.4 0.12 11.9 0.4 1.3 1 0 0 1 1 1 0 Foie gras liver health family 1 HMMR_N PF15905.5 gi|242398703|ref|YP_002994127.1| - 0.085 12.3 11.6 0.13 11.7 11.6 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal zf-C4H2 PF10146.9 gi|242398703|ref|YP_002994127.1| - 0.16 12.2 11.6 0.23 11.8 11.6 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein Lectin_N PF03954.14 gi|242398703|ref|YP_002994127.1| - 0.25 11.1 3.0 0.27 11.0 1.4 1.8 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain NUC PF18510.1 gi|242398703|ref|YP_002994127.1| - 0.25 11.8 3.7 5.7 7.4 0.0 2.2 2 0 0 2 2 2 0 Nuclease domain Sec20 PF03908.13 gi|242398703|ref|YP_002994127.1| - 0.27 11.2 2.9 0.45 10.5 2.3 1.7 1 1 0 1 1 1 0 Sec20 DASH_Dad1 PF08649.10 gi|242398703|ref|YP_002994127.1| - 0.31 11.3 5.0 0.53 10.5 1.9 2.5 1 1 1 2 2 2 0 DASH complex subunit Dad1 TMF_TATA_bd PF12325.8 gi|242398703|ref|YP_002994127.1| - 0.31 11.3 14.4 0.57 10.4 14.4 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding TolA_bind_tri PF16331.5 gi|242398703|ref|YP_002994127.1| - 0.32 11.1 9.1 2.1 8.5 6.5 2.5 1 1 1 2 2 2 0 TolA binding protein trimerisation TMPIT PF07851.13 gi|242398703|ref|YP_002994127.1| - 0.4 9.9 4.5 0.58 9.4 4.5 1.2 1 0 0 1 1 1 0 TMPIT-like protein YojJ PF10372.9 gi|242398703|ref|YP_002994127.1| - 0.41 10.8 5.7 0.85 9.8 1.4 3.3 1 1 3 4 4 4 0 Bacterial membrane-spanning protein N-terminus eIF-4B PF06273.11 gi|242398703|ref|YP_002994127.1| - 0.43 9.6 4.5 0.58 9.2 4.5 1.3 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B LepB_N PF18640.1 gi|242398703|ref|YP_002994127.1| - 0.43 10.2 3.6 0.79 9.3 3.6 1.5 1 1 0 1 1 1 0 LepB N-terminal domain DUF1664 PF07889.12 gi|242398703|ref|YP_002994127.1| - 0.44 10.6 6.3 7.2 6.7 6.0 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|242398703|ref|YP_002994127.1| - 0.56 9.0 12.0 0.99 8.2 12.0 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein DHR10 PF18595.1 gi|242398703|ref|YP_002994127.1| - 0.57 10.2 13.3 0.96 9.5 12.9 1.5 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain FTA4 PF13093.6 gi|242398703|ref|YP_002994127.1| - 0.65 9.8 8.2 3 7.7 8.2 2.1 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 SlyX PF04102.12 gi|242398703|ref|YP_002994127.1| - 0.78 10.4 8.8 1.2 9.8 1.7 2.8 1 1 1 2 2 2 0 SlyX ATP-synt_E PF05680.12 gi|242398703|ref|YP_002994127.1| - 0.84 10.0 3.7 1.7 9.0 3.7 1.5 1 0 0 1 1 1 0 ATP synthase E chain Fib_alpha PF08702.10 gi|242398703|ref|YP_002994127.1| - 1 9.6 6.3 2.6 8.2 6.3 1.7 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.9 gi|242398703|ref|YP_002994127.1| - 1 9.7 11.0 8.7 6.7 6.4 3.0 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HAUS6_N PF14661.6 gi|242398703|ref|YP_002994127.1| - 1 8.9 6.3 1.9 8.0 6.3 1.5 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus HALZ PF02183.18 gi|242398703|ref|YP_002994127.1| - 1.1 9.6 10.0 1.9 8.8 1.5 3.8 4 0 0 4 4 4 0 Homeobox associated leucine zipper DUF2203 PF09969.9 gi|242398703|ref|YP_002994127.1| - 1.3 9.8 5.9 16 6.3 5.9 2.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Fzo_mitofusin PF04799.13 gi|242398703|ref|YP_002994127.1| - 1.7 8.2 7.5 2.5 7.6 6.2 1.9 1 1 1 2 2 2 0 fzo-like conserved region DUF4795 PF16043.5 gi|242398703|ref|YP_002994127.1| - 1.8 8.1 12.8 1.5 8.4 8.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) TSNAXIP1_N PF15739.5 gi|242398703|ref|YP_002994127.1| - 1.9 8.9 12.1 1.9 8.9 2.5 2.5 1 1 0 2 2 2 0 Translin-associated factor X-interacting N-terminus Ly49 PF08391.10 gi|242398703|ref|YP_002994127.1| - 3.7 7.9 6.4 7.4 7.0 5.8 1.7 1 1 1 2 2 2 0 Ly49-like protein, N-terminal region APG6_N PF17675.1 gi|242398703|ref|YP_002994127.1| - 3.9 8.0 14.5 11 6.6 14.4 1.7 1 1 0 1 1 1 0 Apg6 coiled-coil region FlxA PF14282.6 gi|242398703|ref|YP_002994127.1| - 4.4 7.3 9.3 7.4 6.6 8.5 1.8 1 1 0 1 1 1 0 FlxA-like protein FlaC_arch PF05377.11 gi|242398703|ref|YP_002994127.1| - 5 7.6 14.7 2.1e+02 2.4 9.7 3.3 2 1 0 2 2 1 0 Flagella accessory protein C (FlaC) DUF724 PF05266.14 gi|242398703|ref|YP_002994127.1| - 5.1 6.9 11.0 10 5.9 10.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF724) Bap31_Bap29_C PF18035.1 gi|242398703|ref|YP_002994127.1| - 7.9 6.6 11.8 12 6.0 2.4 3.6 1 1 3 4 4 4 0 Bap31/Bap29 cytoplasmic coiled-coil domain Sec61_beta PF03911.16 gi|242398704|ref|YP_002994128.1| - 3.1e-15 55.9 0.4 3.6e-15 55.7 0.4 1.1 1 0 0 1 1 1 1 Sec61beta family DUF202 PF02656.15 gi|242398704|ref|YP_002994128.1| - 0.1 13.1 0.3 3.8 8.0 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF202) MFS_1 PF07690.16 gi|242398706|ref|YP_002994130.1| - 1.4e-49 168.9 54.6 1.4e-49 168.9 54.6 3.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|242398706|ref|YP_002994130.1| - 5.6e-10 38.7 15.4 5.6e-10 38.7 15.4 3.0 2 1 1 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|242398706|ref|YP_002994130.1| - 5.7e-07 28.3 8.9 5.7e-07 28.3 8.9 2.3 2 0 0 2 2 2 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|242398706|ref|YP_002994130.1| - 1.9e-06 27.0 33.0 4.9e-06 25.7 8.3 3.1 2 1 1 3 3 3 3 MFS_1 like family Ribosomal_S6e PF01092.19 gi|242398707|ref|YP_002994131.1| - 4.5e-38 130.1 0.4 2e-37 127.9 0.4 1.8 1 1 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.27 gi|242398708|ref|YP_002994132.1| - 1.2e-31 109.8 0.3 7.8e-31 107.1 0.3 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|242398708|ref|YP_002994132.1| - 1.7e-31 108.3 0.2 4e-31 107.1 0.2 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|242398708|ref|YP_002994132.1| - 4.7e-12 46.1 2.1 1.2e-11 44.8 2.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|242398708|ref|YP_002994132.1| - 2.6e-05 24.3 0.0 4.5e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|242398708|ref|YP_002994132.1| - 5e-05 23.3 0.2 0.0009 19.2 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 gi|242398708|ref|YP_002994132.1| - 0.00082 19.1 0.3 0.59 9.9 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation PolC_DP2 PF03833.13 gi|242398708|ref|YP_002994132.1| - 0.001 17.0 0.0 0.0014 16.6 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Nop10p PF04135.12 gi|242398708|ref|YP_002994132.1| - 0.0023 17.9 0.7 0.0046 17.0 0.7 1.4 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|242398708|ref|YP_002994132.1| - 0.0031 17.1 0.4 0.0078 15.8 0.4 1.7 1 0 0 1 1 1 1 RecR protein zf-ribbon_3 PF13248.6 gi|242398708|ref|YP_002994132.1| - 0.0065 15.8 4.7 0.015 14.6 4.7 1.7 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|242398708|ref|YP_002994132.1| - 0.013 15.5 0.0 0.034 14.2 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA G-alpha PF00503.20 gi|242398708|ref|YP_002994132.1| - 0.04 13.1 0.1 0.062 12.4 0.1 1.2 1 0 0 1 1 1 0 G-protein alpha subunit zinc_ribbon_2 PF13240.6 gi|242398708|ref|YP_002994132.1| - 0.061 13.1 8.4 0.15 11.8 8.4 1.7 1 0 0 1 1 1 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|242398708|ref|YP_002994132.1| - 0.07 13.1 0.4 0.55 10.2 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon NRDD PF13597.6 gi|242398708|ref|YP_002994132.1| - 0.1 11.3 0.1 0.15 10.8 0.1 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF35_N PF12172.8 gi|242398708|ref|YP_002994132.1| - 0.11 12.5 0.9 0.21 11.5 0.9 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.11 gi|242398708|ref|YP_002994132.1| - 0.27 10.9 1.5 5.8 6.7 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.6 gi|242398708|ref|YP_002994132.1| - 0.28 10.8 6.7 0.33 10.6 0.3 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.10 gi|242398708|ref|YP_002994132.1| - 0.67 10.1 4.3 10 6.3 0.3 2.7 1 1 1 2 2 2 0 Zinc ribbon domain PIN_9 PF18477.1 gi|242398709|ref|YP_002994133.1| - 1e-31 109.6 0.2 1.2e-31 109.4 0.2 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|242398709|ref|YP_002994133.1| - 1.3e-06 28.7 0.0 1.8e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.6 gi|242398709|ref|YP_002994133.1| - 0.00019 21.7 1.3 0.047 14.0 1.3 2.2 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|242398709|ref|YP_002994133.1| - 0.02 15.4 0.7 0.061 13.8 0.7 1.7 1 1 0 1 1 1 0 PIN domain AdoHcyase_NAD PF00670.21 gi|242398709|ref|YP_002994133.1| - 0.048 13.7 0.4 0.059 13.4 0.4 1.1 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF5615 PF18480.1 gi|242398709|ref|YP_002994133.1| - 0.13 12.0 0.0 0.4 10.5 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF5615) SMC_N PF02463.19 gi|242398710|ref|YP_002994134.1| - 1e-65 221.3 54.0 1e-63 214.7 54.0 4.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|242398710|ref|YP_002994134.1| - 3e-32 111.4 1.0 1.3e-31 109.3 0.1 2.7 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|242398710|ref|YP_002994134.1| - 7.9e-18 65.7 0.0 7.9e-18 65.7 0.0 7.3 2 2 3 5 5 2 1 AAA domain AAA_21 PF13304.6 gi|242398710|ref|YP_002994134.1| - 1.5e-13 51.3 2.2 1.3e-08 35.0 0.9 4.7 3 2 1 4 4 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|242398710|ref|YP_002994134.1| - 6.3e-12 45.9 2.4 6.3e-12 45.9 2.4 4.8 2 2 2 4 4 4 2 AAA ATPase domain AAA_29 PF13555.6 gi|242398710|ref|YP_002994134.1| - 2.3e-05 24.0 0.6 6.1e-05 22.7 0.1 2.0 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|242398710|ref|YP_002994134.1| - 9.6e-05 21.2 30.6 9.6e-05 21.2 30.6 5.8 3 2 3 6 6 6 2 AAA domain Tektin PF03148.14 gi|242398710|ref|YP_002994134.1| - 0.0001 21.2 16.4 0.0001 21.2 16.4 9.4 2 2 7 9 9 7 3 Tektin family APG6_N PF17675.1 gi|242398710|ref|YP_002994134.1| - 0.00029 21.4 172.0 0.00034 21.2 27.2 9.8 2 2 7 9 9 9 5 Apg6 coiled-coil region GAS PF13851.6 gi|242398710|ref|YP_002994134.1| - 0.00048 19.5 21.9 0.00048 19.5 21.9 8.4 2 2 6 8 8 8 4 Growth-arrest specific micro-tubule binding ATG16 PF08614.11 gi|242398710|ref|YP_002994134.1| - 0.00072 19.8 23.0 0.00072 19.8 23.0 8.7 2 2 5 8 8 8 3 Autophagy protein 16 (ATG16) Laminin_I PF06008.14 gi|242398710|ref|YP_002994134.1| - 0.0015 18.3 19.1 0.0015 18.3 19.1 6.0 2 2 3 5 5 5 1 Laminin Domain I DUF4407 PF14362.6 gi|242398710|ref|YP_002994134.1| - 0.0019 17.6 12.8 0.0019 17.6 12.8 6.3 2 2 5 7 7 7 1 Domain of unknown function (DUF4407) MscS_porin PF12795.7 gi|242398710|ref|YP_002994134.1| - 0.003 17.1 7.8 0.003 17.1 7.8 7.3 3 3 4 7 7 7 3 Mechanosensitive ion channel porin domain Spc7 PF08317.11 gi|242398710|ref|YP_002994134.1| - 0.0038 16.2 156.3 0.078 11.8 9.3 8.0 2 2 7 9 9 9 3 Spc7 kinetochore protein Seryl_tRNA_N PF02403.22 gi|242398710|ref|YP_002994134.1| - 0.0042 17.3 11.5 0.0042 17.3 11.5 10.7 2 2 6 9 9 8 3 Seryl-tRNA synthetase N-terminal domain IFT57 PF10498.9 gi|242398710|ref|YP_002994134.1| - 0.0042 16.1 115.4 0.027 13.4 20.3 6.7 3 2 3 7 7 7 5 Intra-flagellar transport protein 57 DUF1664 PF07889.12 gi|242398710|ref|YP_002994134.1| - 0.006 16.6 90.6 0.52 10.4 3.0 10.1 2 2 7 11 11 11 6 Protein of unknown function (DUF1664) CENP-F_leu_zip PF10473.9 gi|242398710|ref|YP_002994134.1| - 0.0089 16.1 26.0 0.0089 16.1 26.0 8.8 2 2 7 9 9 7 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ABC_tran_CTD PF16326.5 gi|242398710|ref|YP_002994134.1| - 0.015 15.6 3.3 0.015 15.6 3.3 12.9 4 3 8 13 13 11 0 ABC transporter C-terminal domain Baculo_PEP_C PF04513.12 gi|242398710|ref|YP_002994134.1| - 0.022 14.8 50.0 0.041 13.9 1.2 7.9 2 2 6 8 8 8 0 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.9 gi|242398710|ref|YP_002994134.1| - 0.022 13.8 124.6 0.082 12.0 30.5 6.7 2 2 4 6 6 6 0 Vacuolar sorting 38 and autophagy-related subunit 14 Surfac_D-trimer PF09006.11 gi|242398710|ref|YP_002994134.1| - 0.031 14.2 0.2 22 5.0 0.0 4.0 4 0 0 4 4 2 0 Lung surfactant protein D coiled-coil trimerisation TPR_MLP1_2 PF07926.12 gi|242398710|ref|YP_002994134.1| - 0.045 13.8 140.5 0.17 12.0 20.5 8.9 2 2 7 9 9 8 0 TPR/MLP1/MLP2-like protein Fez1 PF06818.15 gi|242398710|ref|YP_002994134.1| - 1.4 9.3 132.4 0.82 10.1 28.9 7.6 2 2 5 7 7 7 0 Fez1 EzrA PF06160.12 gi|242398710|ref|YP_002994134.1| - 1.7 6.7 135.1 0.79 7.8 13.4 6.3 2 2 3 5 5 5 0 Septation ring formation regulator, EzrA DUF3584 PF12128.8 gi|242398710|ref|YP_002994134.1| - 4.5 4.6 118.5 0.0039 14.8 50.7 4.3 3 2 0 4 4 4 0 Protein of unknown function (DUF3584) SMC_ScpA PF02616.14 gi|242398711|ref|YP_002994135.1| - 7.6e-16 58.7 8.5 1e-10 42.0 7.2 2.4 1 1 1 2 2 2 2 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 gi|242398711|ref|YP_002994135.1| - 1.3e-05 24.3 0.0 2.3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein DUF4470 PF14737.6 gi|242398711|ref|YP_002994135.1| - 0.002 18.3 0.1 0.18 12.0 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4470) Pox_ATPase-GT PF10640.9 gi|242398711|ref|YP_002994135.1| - 0.0059 15.5 0.3 0.01 14.7 0.3 1.4 1 0 0 1 1 1 1 mRNA capping enzyme N-terminal, ATPase and guanylyltransferase CNDH2_C PF16858.5 gi|242398711|ref|YP_002994135.1| - 0.011 15.7 0.4 0.079 12.8 0.0 2.1 1 1 1 2 2 2 0 Condensin II complex subunit CAP-H2 or CNDH2, C-term TFIIS_M PF07500.14 gi|242398711|ref|YP_002994135.1| - 0.052 14.0 0.5 0.052 14.0 0.5 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS), central domain Inositol_P PF00459.25 gi|242398712|ref|YP_002994136.1| - 3.8e-31 108.6 0.0 4.5e-31 108.4 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|242398712|ref|YP_002994136.1| - 1.3e-05 24.7 0.0 2.2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain DUF63 PF01889.17 gi|242398713|ref|YP_002994137.1| - 9e-87 291.7 23.4 1e-86 291.6 23.4 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 FeoB_associated PF12669.7 gi|242398713|ref|YP_002994137.1| - 0.67 10.4 1.5 2.1 8.8 1.5 1.8 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein Fe-ADH_2 PF13685.6 gi|242398714|ref|YP_002994138.1| - 2.2e-74 250.3 0.5 2.7e-74 250.0 0.5 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|242398714|ref|YP_002994138.1| - 2e-27 95.9 0.3 3.7e-27 95.1 0.3 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|242398714|ref|YP_002994138.1| - 4.3e-10 39.2 0.2 1.1e-09 37.8 0.2 1.7 1 1 0 1 1 1 1 3-dehydroquinate synthase PFK PF00365.20 gi|242398714|ref|YP_002994138.1| - 0.084 12.2 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Phosphofructokinase UPF0179 PF03684.13 gi|242398715|ref|YP_002994139.1| - 1.8e-40 138.1 0.3 2e-40 137.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) CT_A_B PF02626.15 gi|242398716|ref|YP_002994140.1| - 2.1e-91 306.2 0.0 2.5e-91 306.0 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain A and B CT_C_D PF02682.16 gi|242398717|ref|YP_002994141.1| - 5.1e-75 251.6 0.0 6e-75 251.4 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D LamB_YcsF PF03746.16 gi|242398718|ref|YP_002994142.1| - 1.8e-104 348.6 0.0 2.1e-104 348.5 0.0 1.0 1 0 0 1 1 1 1 LamB/YcsF family PIN_6 PF17146.4 gi|242398719|ref|YP_002994143.1| - 1.3e-18 67.3 0.4 2e-18 66.7 0.4 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|242398719|ref|YP_002994143.1| - 1.2e-05 24.8 0.2 2.4e-05 23.9 0.1 1.3 1 1 0 1 1 1 1 PINc domain ribonuclease Zn-ribbon_8 PF09723.10 gi|242398719|ref|YP_002994143.1| - 6.2e-05 23.0 0.2 0.00012 22.1 0.2 1.5 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|242398719|ref|YP_002994143.1| - 8.1e-05 22.6 0.0 0.00015 21.7 0.0 1.4 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|242398719|ref|YP_002994143.1| - 0.00088 18.6 3.2 0.0014 17.9 3.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|242398719|ref|YP_002994143.1| - 0.0019 18.1 3.8 0.038 13.9 0.4 2.2 2 0 0 2 2 2 1 SprT-like zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|242398719|ref|YP_002994143.1| - 0.002 17.7 1.3 0.0052 16.4 1.3 1.7 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|242398719|ref|YP_002994143.1| - 0.014 15.4 0.1 0.021 14.8 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|242398719|ref|YP_002994143.1| - 0.02 15.1 0.4 0.038 14.1 0.4 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2 PF00096.26 gi|242398719|ref|YP_002994143.1| - 0.028 14.9 1.6 0.41 11.2 0.1 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc-ribbons_6 PF07191.12 gi|242398719|ref|YP_002994143.1| - 0.028 14.4 0.1 0.05 13.6 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|242398719|ref|YP_002994143.1| - 0.03 14.2 2.1 6 6.9 0.2 2.5 2 0 0 2 2 2 0 Nudix N-terminal Sigma70_r4 PF04545.16 gi|242398719|ref|YP_002994143.1| - 0.072 12.6 0.0 0.32 10.5 0.0 2.0 1 1 1 2 2 2 0 Sigma-70, region 4 TF_Zn_Ribbon PF08271.12 gi|242398719|ref|YP_002994143.1| - 0.12 11.9 4.0 0.58 9.7 4.0 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding ADK_lid PF05191.14 gi|242398719|ref|YP_002994143.1| - 0.13 12.3 1.5 0.25 11.3 1.5 1.5 1 0 0 1 1 1 0 Adenylate kinase, active site lid Xin PF08043.12 gi|242398719|ref|YP_002994143.1| - 0.14 11.9 0.8 0.26 10.9 0.8 1.5 1 0 0 1 1 1 0 Xin repeat Prok-RING_1 PF14446.6 gi|242398719|ref|YP_002994143.1| - 0.16 11.9 1.4 0.26 11.3 1.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 ATPase_2 PF01637.18 gi|242398720|ref|YP_002994144.1| - 4.4e-27 95.5 1.1 5.5e-27 95.2 0.3 1.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|242398720|ref|YP_002994144.1| - 3.6e-12 46.5 0.1 1.3e-09 38.2 0.0 2.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|242398720|ref|YP_002994144.1| - 7e-06 26.4 0.0 1.6e-05 25.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|242398720|ref|YP_002994144.1| - 3.6e-05 24.2 0.0 0.00011 22.6 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Hydrolase_3 PF08282.12 gi|242398721|ref|YP_002994145.1| - 1e-05 25.5 0.5 0.029 14.1 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242398721|ref|YP_002994145.1| - 0.00083 19.7 0.7 0.081 13.2 0.0 2.3 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|242398721|ref|YP_002994145.1| - 0.0011 18.7 0.1 0.0062 16.3 0.1 2.0 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase DUF3970 PF13113.6 gi|242398721|ref|YP_002994145.1| - 0.055 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) Ras_bdg_2 PF14847.6 gi|242398721|ref|YP_002994145.1| - 0.099 13.0 0.1 0.21 12.0 0.1 1.7 1 1 0 1 1 1 0 Ras-binding domain of Byr2 Flavoprotein PF02441.19 gi|242398722|ref|YP_002994146.1| - 9.9e-18 64.4 0.0 3.1e-17 62.7 0.0 1.7 1 1 0 1 1 1 1 Flavoprotein End_N_terminal PF12218.8 gi|242398723|ref|YP_002994147.1| - 0.037 13.7 0.0 0.071 12.8 0.0 1.4 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase NikR_C PF08753.11 gi|242398726|ref|YP_002994150.1| - 3.7e-33 113.5 5.2 5.5e-33 113.0 5.2 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|242398726|ref|YP_002994150.1| - 4.8e-07 29.5 0.0 9.7e-07 28.5 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|242398726|ref|YP_002994150.1| - 0.044 13.9 0.1 0.13 12.4 0.0 1.8 2 1 1 3 3 3 0 HicB_like antitoxin of bacterial toxin-antitoxin system TFIID-31kDa PF02291.15 gi|242398726|ref|YP_002994150.1| - 0.099 12.7 0.1 0.4 10.8 0.0 1.8 2 0 0 2 2 2 0 Transcription initiation factor IID, 31kD subunit DUF553 PF04473.12 gi|242398728|ref|YP_002994152.1| - 3e-50 169.8 1.9 5e-50 169.0 1.9 1.4 1 0 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.19 gi|242398728|ref|YP_002994152.1| - 0.015 15.8 0.0 0.11 13.0 0.0 2.1 1 1 0 1 1 1 0 Transglutaminase-like superfamily PliI PF16743.5 gi|242398728|ref|YP_002994152.1| - 0.033 13.9 0.0 0.067 12.9 0.0 1.4 1 0 0 1 1 1 0 Periplasmic lysozyme inhibitor of I-type lysozyme Binary_toxB PF03495.14 gi|242398728|ref|YP_002994152.1| - 0.26 11.5 33.3 0.38 11.0 4.9 6.3 2 1 4 6 6 6 0 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain DndE PF08870.11 gi|242398728|ref|YP_002994152.1| - 0.34 11.2 1.6 0.39 11.0 0.0 2.0 2 0 0 2 2 2 0 DNA sulphur modification protein DndE DUF5122 PF17164.4 gi|242398729|ref|YP_002994153.1| - 1.6e-14 53.9 28.4 0.00083 19.6 0.1 8.2 7 1 0 7 7 7 6 Domain of unknown function (DUF5122) beta-propeller Kelch_3 PF13415.6 gi|242398729|ref|YP_002994153.1| - 0.00012 22.2 11.1 2.4 8.5 0.2 5.7 6 0 0 6 6 6 2 Galactose oxidase, central domain RHS PF03527.14 gi|242398729|ref|YP_002994153.1| - 0.00025 20.7 6.1 38 4.1 0.0 6.1 6 0 0 6 6 6 0 RHS protein WD40 PF00400.32 gi|242398729|ref|YP_002994153.1| - 0.0031 18.3 6.9 10 7.1 0.1 5.6 5 0 0 5 5 5 1 WD domain, G-beta repeat NHL PF01436.21 gi|242398729|ref|YP_002994153.1| - 0.0066 16.4 23.9 2.7 8.2 0.3 6.9 6 0 0 6 6 6 2 NHL repeat Tox-HDC PF15656.6 gi|242398729|ref|YP_002994153.1| - 0.012 15.8 4.2 1.5 9.0 0.1 4.3 2 1 2 4 4 4 0 Toxin with a H, D/N and C signature PQQ PF01011.21 gi|242398729|ref|YP_002994153.1| - 0.023 14.6 14.7 26 5.0 0.1 6.2 6 0 0 6 6 6 0 PQQ enzyme repeat MGC-24 PF05283.11 gi|242398729|ref|YP_002994153.1| - 0.26 11.7 6.5 0.45 11.0 6.5 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Kelch_6 PF13964.6 gi|242398729|ref|YP_002994153.1| - 0.38 11.1 7.2 59 4.2 0.0 5.9 7 0 0 7 7 7 0 Kelch motif SSP160 PF06933.11 gi|242398729|ref|YP_002994153.1| - 0.73 8.0 11.8 1 7.5 11.8 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF3439 PF11921.8 gi|242398729|ref|YP_002994153.1| - 1.4 8.9 11.3 2.6 8.0 11.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) Mucin PF01456.17 gi|242398729|ref|YP_002994153.1| - 1.5 8.9 18.1 3.1 7.8 18.1 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein VCBS PF13517.6 gi|242398729|ref|YP_002994153.1| - 5.8 7.6 30.3 3.6 8.2 0.8 6.6 1 1 5 6 6 6 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Nre_N PF04894.12 gi|242398730|ref|YP_002994154.1| - 7.6e-103 344.0 0.0 9.9e-103 343.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|242398730|ref|YP_002994154.1| - 8.2e-36 122.3 0.0 1.2e-35 121.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal Nre, C-terminal AAA_31 PF13614.6 gi|242398732|ref|YP_002994156.1| - 7.8e-53 179.0 2.2 1e-52 178.7 2.2 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|242398732|ref|YP_002994156.1| - 4.2e-27 94.7 0.1 6.4e-27 94.1 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|242398732|ref|YP_002994156.1| - 9.2e-16 58.0 0.8 2.7e-15 56.5 0.8 1.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|242398732|ref|YP_002994156.1| - 5.2e-13 48.9 0.0 1.7e-11 43.9 0.0 2.3 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|242398732|ref|YP_002994156.1| - 1e-11 44.8 0.4 6.6e-05 22.5 0.0 2.5 2 1 1 3 3 3 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|242398732|ref|YP_002994156.1| - 5.3e-11 42.4 0.0 2.6e-10 40.2 0.0 1.8 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|242398732|ref|YP_002994156.1| - 4.2e-10 39.4 0.1 7e-08 32.1 0.1 2.1 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|242398732|ref|YP_002994156.1| - 4.7e-05 23.3 2.1 0.47 10.2 0.2 3.1 2 1 0 2 2 2 2 AAA domain VirC1 PF07015.11 gi|242398732|ref|YP_002994156.1| - 0.0011 18.4 0.8 0.37 10.0 0.0 2.6 2 1 1 3 3 3 2 VirC1 protein DUF1611 PF07755.11 gi|242398732|ref|YP_002994156.1| - 0.016 14.5 0.2 0.43 9.8 0.1 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF1611_C) P-loop domain AAA_25 PF13481.6 gi|242398732|ref|YP_002994156.1| - 0.03 13.9 0.1 0.85 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|242398732|ref|YP_002994156.1| - 0.056 13.4 0.3 0.11 12.5 0.3 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit SRP54 PF00448.22 gi|242398732|ref|YP_002994156.1| - 0.084 12.5 0.1 0.33 10.5 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|242398732|ref|YP_002994156.1| - 0.088 12.6 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 gi|242398732|ref|YP_002994156.1| - 0.16 11.6 1.7 0.38 10.4 1.7 1.5 1 1 0 1 1 1 0 AAA domain DUF4383 PF14325.6 gi|242398733|ref|YP_002994157.1| - 0.18 12.1 8.1 2.4 8.5 1.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4383) zf-H2C2_5 PF13909.6 gi|242398735|ref|YP_002994159.1| - 7.5e-06 25.6 0.0 1.3e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 C2H2-type zinc-finger domain zf-Di19 PF05605.12 gi|242398735|ref|YP_002994159.1| - 2.6e-05 24.4 0.2 3.2e-05 24.1 0.2 1.1 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding Actin_micro PF17003.5 gi|242398735|ref|YP_002994159.1| - 0.00017 20.9 0.0 0.00019 20.7 0.0 1.0 1 0 0 1 1 1 1 Putative actin-like family zf_C2H2_ZHX PF18387.1 gi|242398735|ref|YP_002994159.1| - 0.00019 21.0 0.0 0.00024 20.6 0.0 1.1 1 0 0 1 1 1 1 Zinc-fingers and homeoboxes C2H2 finger domain zf-C2H2 PF00096.26 gi|242398735|ref|YP_002994159.1| - 0.00057 20.2 0.2 0.00096 19.5 0.2 1.4 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|242398735|ref|YP_002994159.1| - 0.0013 19.4 0.3 0.002 18.8 0.3 1.4 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_2 PF12756.7 gi|242398735|ref|YP_002994159.1| - 0.0016 18.7 0.1 0.0016 18.7 0.1 1.1 1 0 0 1 1 1 1 C2H2 type zinc-finger (2 copies) zf-C2H2_12 PF18658.1 gi|242398735|ref|YP_002994159.1| - 0.0035 16.9 0.0 0.0045 16.5 0.0 1.2 1 0 0 1 1 1 1 Zinc-finger C2H2-type zf-C2H2_9 PF16293.5 gi|242398735|ref|YP_002994159.1| - 0.0037 17.1 0.0 0.0046 16.8 0.0 1.2 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) zf-H2C2_2 PF13465.6 gi|242398735|ref|YP_002994159.1| - 0.0071 16.7 2.3 0.064 13.7 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain DUF629 PF04780.12 gi|242398735|ref|YP_002994159.1| - 0.011 14.3 0.1 0.012 14.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF629) zf-C2HE PF16278.5 gi|242398735|ref|YP_002994159.1| - 0.014 15.8 0.2 0.017 15.6 0.2 1.3 1 0 0 1 1 1 0 C2HE / C2H2 / C2HC zinc-binding finger zinc_ribbon_2 PF13240.6 gi|242398735|ref|YP_002994159.1| - 0.019 14.6 0.4 0.029 14.1 0.4 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|242398735|ref|YP_002994159.1| - 0.021 14.8 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-Sec23_Sec24 PF04810.15 gi|242398735|ref|YP_002994159.1| - 0.028 14.5 0.0 0.036 14.1 0.0 1.2 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger ARS2 PF04959.13 gi|242398735|ref|YP_002994159.1| - 0.028 14.8 0.2 0.031 14.6 0.2 1.1 1 0 0 1 1 1 0 Arsenite-resistance protein 2 zf_C2H2_10 PF18414.1 gi|242398735|ref|YP_002994159.1| - 0.038 13.5 0.0 0.058 12.9 0.0 1.2 1 0 0 1 1 1 0 C2H2 type zinc-finger PTPS PF01242.19 gi|242398736|ref|YP_002994160.1| - 6.4e-28 97.2 0.1 7.8e-28 96.9 0.1 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase MAJIN PF15077.6 gi|242398736|ref|YP_002994160.1| - 0.1 12.4 0.4 3 7.6 0.3 2.1 2 0 0 2 2 2 0 Membrane-anchored junction protein P63C PF10546.9 gi|242398736|ref|YP_002994160.1| - 0.12 12.9 0.1 23 5.7 0.1 2.3 2 0 0 2 2 2 0 P63C domain DUF296 PF03479.15 gi|242398737|ref|YP_002994161.1| - 3.7e-23 82.0 0.1 4.2e-23 81.8 0.1 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Peptidase_C26 PF07722.13 gi|242398738|ref|YP_002994162.1| - 2.6e-56 190.8 0.0 3e-56 190.6 0.0 1.0 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.28 gi|242398738|ref|YP_002994162.1| - 1e-08 35.2 0.0 3.5e-08 33.5 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Radical_SAM PF04055.21 gi|242398739|ref|YP_002994163.1| - 4.4e-15 56.5 0.1 1e-14 55.3 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|242398739|ref|YP_002994163.1| - 4e-06 26.7 6.4 0.011 15.5 0.0 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) Fer4_12 PF13353.6 gi|242398739|ref|YP_002994163.1| - 0.022 15.0 0.6 0.057 13.7 0.3 1.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain OsmC PF02566.19 gi|242398740|ref|YP_002994164.1| - 6.2e-17 61.9 0.0 7.8e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein DUF1884 PF08967.10 gi|242398741|ref|YP_002994165.1| - 8.2e-36 122.1 0.8 9.1e-36 122.0 0.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1884) CitG PF01874.16 gi|242398742|ref|YP_002994166.1| - 2.2e-49 168.6 0.0 2.4e-49 168.5 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase FOP_dimer PF09398.10 gi|242398742|ref|YP_002994166.1| - 0.075 13.3 0.9 0.19 12.0 0.2 2.0 2 0 0 2 2 2 0 FOP N terminal dimerisation domain NMT1 PF09084.11 gi|242398742|ref|YP_002994166.1| - 0.15 11.9 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 NMT1/THI5 like DUF2154 PF09922.9 gi|242398743|ref|YP_002994167.1| - 0.00027 20.8 2.9 0.0046 16.8 0.1 2.7 2 1 1 3 3 3 2 Cell wall-active antibiotics response 4TMS YvqF DUF4097 PF13349.6 gi|242398743|ref|YP_002994167.1| - 0.021 14.2 2.8 1.7 7.9 0.5 2.4 2 1 0 2 2 2 0 Putative adhesin DUF4418 PF14387.6 gi|242398743|ref|YP_002994167.1| - 0.67 10.2 3.7 0.18 12.0 0.7 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) PspC PF04024.12 gi|242398744|ref|YP_002994168.1| - 1.2e-19 69.9 0.4 1.2e-19 69.9 0.4 2.1 2 1 0 2 2 2 1 PspC domain DUF373 PF04123.13 gi|242398744|ref|YP_002994168.1| - 0.018 14.5 0.9 0.018 14.5 0.9 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF373) TspO_MBR PF03073.15 gi|242398744|ref|YP_002994168.1| - 0.04 14.0 0.3 0.083 12.9 0.3 1.6 1 1 0 1 1 1 0 TspO/MBR family PspC PF04024.12 gi|242398745|ref|YP_002994169.1| - 4.7e-24 84.0 0.8 5.3e-24 83.8 0.8 1.0 1 0 0 1 1 1 1 PspC domain Potass_KdpF PF09604.10 gi|242398745|ref|YP_002994169.1| - 0.019 15.0 4.6 0.032 14.2 4.6 1.4 1 0 0 1 1 1 0 F subunit of K+-transporting ATPase (Potass_KdpF) UPF0020 PF01170.18 gi|242398747|ref|YP_002994171.1| - 0.091 12.4 0.0 0.097 12.3 0.0 1.0 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Prok-JAB PF14464.6 gi|242398748|ref|YP_002994172.1| - 1.7e-15 56.9 0.0 2.1e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|242398748|ref|YP_002994172.1| - 6.7e-05 22.9 0.0 8.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF4329 PF14220.6 gi|242398748|ref|YP_002994172.1| - 0.048 13.7 0.0 0.068 13.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4329) MobB PF03205.14 gi|242398749|ref|YP_002994173.1| - 3.7e-19 68.9 0.3 6.6e-19 68.1 0.3 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.13 gi|242398749|ref|YP_002994173.1| - 9.8e-08 31.5 0.3 1.8e-07 30.7 0.3 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster UPF0180 PF03698.13 gi|242398749|ref|YP_002994173.1| - 0.0017 18.5 0.9 1.5 9.0 0.1 2.8 2 1 0 2 2 2 2 Uncharacterised protein family (UPF0180) AAA_14 PF13173.6 gi|242398749|ref|YP_002994173.1| - 0.0025 17.8 0.1 0.0046 17.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|242398749|ref|YP_002994173.1| - 0.0074 15.8 0.2 0.016 14.7 0.0 1.6 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA PF00004.29 gi|242398749|ref|YP_002994173.1| - 0.022 15.2 0.6 0.12 12.8 0.1 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|242398749|ref|YP_002994173.1| - 0.064 12.9 0.4 0.16 11.6 0.4 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|242398749|ref|YP_002994173.1| - 0.11 12.6 0.0 0.24 11.5 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|242398749|ref|YP_002994173.1| - 0.11 12.3 1.0 0.19 11.5 0.1 1.9 2 1 0 2 2 2 0 AAA domain DUF150_C PF17384.2 gi|242398750|ref|YP_002994174.1| - 0.0051 16.9 0.2 0.007 16.5 0.2 1.3 1 0 0 1 1 1 1 RimP C-terminal SH3 domain DUF5338 PF17273.2 gi|242398751|ref|YP_002994175.1| - 0.035 14.2 0.2 36 4.5 0.0 3.8 3 1 1 4 4 4 0 Family of unknown function (DUF5338) S10_plectin PF03501.15 gi|242398751|ref|YP_002994175.1| - 0.04 14.0 0.1 0.58 10.3 0.1 2.3 1 1 1 2 2 2 0 Plectin/S10 domain DUF5362 PF17319.2 gi|242398752|ref|YP_002994176.1| - 0.0016 18.2 6.6 0.0029 17.4 6.6 1.5 1 1 0 1 1 1 1 Family of unknown function (DUF5362) DUF4234 PF14018.6 gi|242398752|ref|YP_002994176.1| - 0.019 15.1 2.2 0.063 13.4 1.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) DUF4013 PF13197.6 gi|242398752|ref|YP_002994176.1| - 0.02 14.8 8.0 0.023 14.6 8.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) DUF2371 PF10177.9 gi|242398752|ref|YP_002994176.1| - 0.031 14.4 0.5 0.056 13.6 0.5 1.5 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) Ac76 PF05814.11 gi|242398752|ref|YP_002994176.1| - 0.046 13.7 0.8 0.072 13.1 0.1 1.7 1 1 1 2 2 2 0 Orf76 (Ac76) MotA_ExbB PF01618.16 gi|242398752|ref|YP_002994176.1| - 0.088 12.6 0.2 0.14 12.0 0.2 1.4 1 0 0 1 1 1 0 MotA/TolQ/ExbB proton channel family Stevor PF17410.2 gi|242398752|ref|YP_002994176.1| - 0.24 10.9 0.7 0.31 10.6 0.7 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Sigma_reg_N PF13800.6 gi|242398752|ref|YP_002994176.1| - 0.33 11.3 2.2 1.3 9.3 0.2 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal COX7C PF02935.16 gi|242398752|ref|YP_002994176.1| - 1.1 9.6 2.5 2 8.7 2.5 1.5 1 1 0 1 1 1 0 Cytochrome c oxidase subunit VIIc Insulin_TMD PF17870.1 gi|242398752|ref|YP_002994176.1| - 3.3 7.9 7.4 14 5.9 4.4 2.4 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment DUF2207 PF09972.9 gi|242398752|ref|YP_002994176.1| - 9.1 4.9 6.7 2.1 7.0 2.2 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) AIRS_C PF02769.22 gi|242398753|ref|YP_002994177.1| - 1.3e-32 113.1 2.6 3.2e-32 111.8 1.3 2.0 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|242398753|ref|YP_002994177.1| - 1.5e-17 64.1 0.5 3.2e-17 63.0 0.1 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain FGGY_N PF00370.21 gi|242398754|ref|YP_002994178.1| - 1.8e-49 168.5 0.0 1.5e-23 83.6 0.0 2.3 2 0 0 2 2 2 2 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|242398754|ref|YP_002994178.1| - 2e-33 115.8 0.0 5.4e-33 114.4 0.0 1.6 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|242398754|ref|YP_002994178.1| - 0.048 13.2 0.0 0.22 11.0 0.0 1.9 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family DUF1667 PF07892.11 gi|242398755|ref|YP_002994179.1| - 8.3e-32 109.1 3.1 1.3e-31 108.4 3.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1667) Molybdop_Fe4S4 PF04879.16 gi|242398755|ref|YP_002994179.1| - 0.019 14.9 0.5 0.033 14.2 0.5 1.4 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Pyr_redox_2 PF07992.14 gi|242398756|ref|YP_002994180.1| - 2.5e-31 109.0 0.2 3.3e-31 108.6 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|242398756|ref|YP_002994180.1| - 9.4e-12 45.3 3.6 2.3e-06 28.1 0.1 3.7 3 1 1 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|242398756|ref|YP_002994180.1| - 8.5e-10 37.9 5.3 1.7e-06 27.1 0.4 3.2 2 1 1 3 3 3 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|242398756|ref|YP_002994180.1| - 1.2e-09 37.9 1.7 6.5e-06 25.6 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|242398756|ref|YP_002994180.1| - 4.3e-09 36.5 1.3 6.7e-07 29.4 0.3 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|242398756|ref|YP_002994180.1| - 7.4e-09 35.3 3.2 0.0003 20.1 1.9 2.9 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|242398756|ref|YP_002994180.1| - 1.7e-08 34.2 5.2 2.4e-08 33.8 0.8 2.6 2 1 0 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.24 gi|242398756|ref|YP_002994180.1| - 2.1e-08 34.2 5.7 4.5e-05 23.2 0.9 3.2 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|242398756|ref|YP_002994180.1| - 2.5e-07 30.1 7.0 2.8e-07 30.0 0.5 3.2 4 1 1 5 5 5 1 FAD binding domain Thi4 PF01946.17 gi|242398756|ref|YP_002994180.1| - 8.8e-07 28.4 2.5 6.6e-06 25.5 0.4 2.5 2 1 1 3 3 3 1 Thi4 family NAD_binding_7 PF13241.6 gi|242398756|ref|YP_002994180.1| - 1.6e-05 25.3 0.1 0.039 14.4 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding GIDA PF01134.22 gi|242398756|ref|YP_002994180.1| - 2.9e-05 23.3 3.6 7.9e-05 21.9 0.5 2.7 2 1 0 3 3 3 1 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|242398756|ref|YP_002994180.1| - 0.00013 22.1 0.7 0.025 14.6 0.3 2.7 2 1 1 3 3 3 1 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.12 gi|242398756|ref|YP_002994180.1| - 0.00016 20.9 2.4 0.00081 18.5 0.2 2.4 3 0 0 3 3 3 1 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|242398756|ref|YP_002994180.1| - 0.00039 19.8 1.3 0.0036 16.7 0.2 2.4 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|242398756|ref|YP_002994180.1| - 0.0011 19.0 1.3 0.15 12.0 0.1 3.2 3 0 0 3 3 3 1 FAD-NAD(P)-binding TrkA_N PF02254.18 gi|242398756|ref|YP_002994180.1| - 0.0016 18.7 2.9 0.63 10.3 0.1 2.9 3 0 0 3 3 2 2 TrkA-N domain ApbA PF02558.16 gi|242398756|ref|YP_002994180.1| - 0.0017 18.0 0.3 0.46 10.1 0.0 2.4 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA K_oxygenase PF13434.6 gi|242398756|ref|YP_002994180.1| - 0.002 17.3 0.0 1.8 7.6 0.0 2.3 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|242398756|ref|YP_002994180.1| - 0.0031 16.4 2.6 0.22 10.3 0.3 2.4 3 0 0 3 3 3 2 Tryptophan halogenase YjeF_N PF03853.15 gi|242398756|ref|YP_002994180.1| - 0.024 14.5 0.1 6.3 6.7 0.0 2.2 2 0 0 2 2 2 0 YjeF-related protein N-terminus NAD_Gly3P_dh_N PF01210.23 gi|242398756|ref|YP_002994180.1| - 0.044 13.8 0.0 3.2 7.7 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short PF00106.25 gi|242398756|ref|YP_002994180.1| - 0.065 12.7 0.1 2 7.8 0.0 2.3 2 0 0 2 2 2 0 short chain dehydrogenase 3HCDH_N PF02737.18 gi|242398756|ref|YP_002994180.1| - 0.081 12.8 0.1 0.38 10.6 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|242398756|ref|YP_002994180.1| - 0.1 13.2 0.8 24 5.6 0.0 2.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|242398756|ref|YP_002994180.1| - 0.11 11.8 0.8 1.1 8.5 0.0 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|242398757|ref|YP_002994181.1| - 5.3e-65 220.3 0.0 6.7e-65 220.0 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|242398757|ref|YP_002994181.1| - 9.3e-16 57.9 6.1 2.1e-15 56.8 6.1 1.6 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_3 PF01494.19 gi|242398757|ref|YP_002994181.1| - 2.9e-10 39.9 0.2 1.5e-05 24.4 0.0 2.8 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|242398757|ref|YP_002994181.1| - 1.2e-09 37.8 0.1 0.0006 19.1 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase SO_alpha_A3 PF17806.1 gi|242398757|ref|YP_002994181.1| - 6.8e-08 32.7 0.0 1.5e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Pyr_redox PF00070.27 gi|242398757|ref|YP_002994181.1| - 8.5e-07 29.4 1.8 0.029 14.9 0.2 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|242398757|ref|YP_002994181.1| - 4.5e-05 23.6 0.1 0.00011 22.4 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|242398757|ref|YP_002994181.1| - 5.5e-05 22.4 0.1 0.16 11.0 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.6 gi|242398757|ref|YP_002994181.1| - 5.6e-05 22.5 4.3 0.007 15.7 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|242398757|ref|YP_002994181.1| - 8.3e-05 21.5 0.7 0.075 11.7 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|242398757|ref|YP_002994181.1| - 0.00014 21.2 0.1 0.00046 19.5 0.0 1.9 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|242398757|ref|YP_002994181.1| - 0.0021 17.2 0.3 0.004 16.3 0.3 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|242398757|ref|YP_002994181.1| - 0.0031 17.4 0.2 0.01 15.7 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|242398757|ref|YP_002994181.1| - 0.011 15.1 1.8 0.29 10.4 0.1 2.4 2 0 0 2 2 2 0 FAD dependent oxidoreductase TrkA_N PF02254.18 gi|242398757|ref|YP_002994181.1| - 0.011 16.0 0.0 0.026 14.8 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Mqo PF06039.15 gi|242398757|ref|YP_002994181.1| - 0.013 14.0 0.1 0.062 11.8 0.0 1.8 2 0 0 2 2 2 0 Malate:quinone oxidoreductase (Mqo) Ndufs5 PF10200.9 gi|242398757|ref|YP_002994181.1| - 0.021 15.0 0.7 0.045 14.0 0.7 1.5 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase, NDUFS5-15kDa BON PF04972.17 gi|242398757|ref|YP_002994181.1| - 0.026 14.8 0.0 0.071 13.4 0.0 1.8 1 0 0 1 1 1 0 BON domain DUF1188 PF06690.11 gi|242398757|ref|YP_002994181.1| - 0.04 13.5 0.1 0.065 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) GIDA PF01134.22 gi|242398757|ref|YP_002994181.1| - 0.042 12.9 0.2 1.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|242398757|ref|YP_002994181.1| - 0.54 9.1 1.4 17 4.1 0.3 2.1 2 0 0 2 2 2 0 Tryptophan halogenase CCG PF02754.16 gi|242398758|ref|YP_002994182.1| - 2.4e-27 95.0 3.6 1.3e-13 50.9 0.2 3.0 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|242398758|ref|YP_002994182.1| - 3.4e-06 27.4 3.0 3.4e-06 27.4 3.0 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242398758|ref|YP_002994182.1| - 9.9e-05 22.4 10.3 0.026 14.6 0.1 4.1 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|242398758|ref|YP_002994182.1| - 0.00011 22.7 4.3 0.00011 22.7 4.3 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|242398758|ref|YP_002994182.1| - 0.00054 20.8 5.0 0.00054 20.8 5.0 2.5 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|242398758|ref|YP_002994182.1| - 0.0011 19.5 5.0 0.0011 19.5 5.0 2.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|242398758|ref|YP_002994182.1| - 0.0085 16.2 6.9 0.0085 16.2 6.9 3.0 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|242398758|ref|YP_002994182.1| - 0.013 15.3 5.1 0.048 13.4 0.1 2.6 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster zf-CSL PF05207.13 gi|242398758|ref|YP_002994182.1| - 0.013 15.2 5.0 3.4 7.5 0.1 3.6 3 0 0 3 3 3 0 CSL zinc finger Integrase_Zn PF02022.19 gi|242398758|ref|YP_002994182.1| - 0.15 12.1 8.2 0.32 11.0 0.2 2.9 3 0 0 3 3 3 0 Integrase Zinc binding domain Fer4_21 PF14697.6 gi|242398758|ref|YP_002994182.1| - 5.8 7.1 14.4 0.58 10.3 0.3 3.4 5 0 0 5 5 4 0 4Fe-4S dicluster domain FAD_binding_4 PF01565.23 gi|242398759|ref|YP_002994183.1| - 2.3e-41 140.8 0.0 5.7e-41 139.5 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|242398759|ref|YP_002994183.1| - 2.9e-35 122.1 0.0 4.1e-35 121.6 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain Aminotran_1_2 PF00155.21 gi|242398760|ref|YP_002994184.1| - 7.3e-74 249.1 0.0 8.3e-74 248.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|242398760|ref|YP_002994184.1| - 1.7e-07 30.9 0.0 2.3e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|242398760|ref|YP_002994184.1| - 4.2e-06 26.0 0.0 8.7e-06 24.9 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|242398760|ref|YP_002994184.1| - 0.00095 17.8 0.0 0.0017 17.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|242398760|ref|YP_002994184.1| - 0.0034 16.7 0.0 0.0053 16.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Rsbr_N PF08678.10 gi|242398760|ref|YP_002994184.1| - 0.071 13.2 0.0 0.25 11.4 0.0 1.9 1 0 0 1 1 1 0 Rsbr N terminal Carbam_trans_C PF16861.5 gi|242398761|ref|YP_002994185.1| - 3.9e-63 212.1 0.0 5.5e-63 211.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyltransferase C-terminus Carbam_trans_N PF02543.15 gi|242398761|ref|YP_002994185.1| - 3.3e-53 181.5 0.5 2.2e-42 146.0 0.2 2.1 1 1 1 2 2 2 2 Carbamoyltransferase N-terminus Peptidase_M22 PF00814.25 gi|242398761|ref|YP_002994185.1| - 2.6e-07 30.6 0.0 4.6e-06 26.5 0.0 2.3 2 0 0 2 2 2 1 Glycoprotease family Sua5_yciO_yrdC PF01300.18 gi|242398761|ref|YP_002994185.1| - 0.06 12.8 0.0 0.28 10.7 0.0 2.0 1 1 0 1 1 1 0 Telomere recombination Cupin_2 PF07883.11 gi|242398762|ref|YP_002994186.1| - 2e-18 65.9 0.1 2.7e-18 65.5 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|242398762|ref|YP_002994186.1| - 3.4e-12 46.4 0.1 4.1e-12 46.2 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|242398762|ref|YP_002994186.1| - 5.7e-06 26.3 0.0 6.2e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|242398762|ref|YP_002994186.1| - 6.2e-05 22.6 0.0 0.00015 21.4 0.0 1.6 1 1 0 1 1 1 1 Cupin CENP-C_C PF11699.8 gi|242398762|ref|YP_002994186.1| - 0.00048 20.3 0.0 0.00072 19.7 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_3 PF05899.12 gi|242398762|ref|YP_002994186.1| - 0.0091 15.7 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Auxin_BP PF02041.16 gi|242398762|ref|YP_002994186.1| - 0.043 13.5 0.0 0.058 13.1 0.0 1.1 1 0 0 1 1 1 0 Auxin binding protein Asp_Arg_Hydrox PF05118.15 gi|242398762|ref|YP_002994186.1| - 0.061 13.2 0.0 0.082 12.7 0.0 1.2 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase Ectoine_synth PF06339.12 gi|242398762|ref|YP_002994186.1| - 0.08 13.1 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase Cupin_7 PF12973.7 gi|242398762|ref|YP_002994186.1| - 0.1 12.5 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain AraC_binding_2 PF14525.6 gi|242398762|ref|YP_002994186.1| - 0.18 11.4 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Mem_trans PF03547.18 gi|242398763|ref|YP_002994187.1| - 4.2e-14 51.7 19.2 2.2e-07 29.6 4.7 2.1 1 1 1 2 2 2 2 Membrane transport protein DUF257 PF03192.13 gi|242398764|ref|YP_002994188.1| - 3e-47 161.1 1.9 3.7e-47 160.8 1.9 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 DUF1229 PF06797.11 gi|242398764|ref|YP_002994188.1| - 0.06 13.6 0.2 0.087 13.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1229) CARDB PF07705.11 gi|242398765|ref|YP_002994189.1| - 0.00093 19.4 0.0 2.2 8.6 0.0 2.7 2 0 0 2 2 2 2 CARDB MGC-24 PF05283.11 gi|242398765|ref|YP_002994189.1| - 0.049 14.1 0.4 0.096 13.1 0.4 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin T2SSF PF00482.23 gi|242398766|ref|YP_002994190.1| - 7.1e-19 68.0 5.4 1.1e-09 38.3 0.0 3.3 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F TLV_coat PF00429.19 gi|242398766|ref|YP_002994190.1| - 0.091 11.4 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 ENV polyprotein (coat polyprotein) T2SSE PF00437.20 gi|242398767|ref|YP_002994191.1| - 4.5e-47 160.4 0.0 6.3e-47 159.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|242398767|ref|YP_002994191.1| - 0.0097 15.6 0.0 0.027 14.2 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|242398767|ref|YP_002994191.1| - 0.042 14.3 0.0 0.19 12.3 0.0 2.0 2 0 0 2 2 2 0 ABC transporter AAA_7 PF12775.7 gi|242398767|ref|YP_002994191.1| - 0.073 12.6 0.2 1.1 8.8 0.0 2.6 3 0 0 3 3 3 0 P-loop containing dynein motor region Microtub_bd PF16796.5 gi|242398767|ref|YP_002994191.1| - 0.12 12.3 0.2 0.32 10.9 0.0 1.7 2 0 0 2 2 2 0 Microtubule binding DEAD PF00270.29 gi|242398767|ref|YP_002994191.1| - 0.16 11.7 0.0 0.39 10.5 0.0 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase CheR_N PF03705.15 gi|242398767|ref|YP_002994191.1| - 2.3 8.0 5.5 0.8 9.5 0.1 3.0 4 0 0 4 4 4 0 CheR methyltransferase, all-alpha domain ATPase PF06745.13 gi|242398768|ref|YP_002994192.1| - 8.4e-16 58.0 0.0 1.3e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 KaiC NACHT PF05729.12 gi|242398768|ref|YP_002994192.1| - 0.0018 18.2 0.4 0.0033 17.3 0.4 1.4 1 1 0 1 1 1 1 NACHT domain AAA_25 PF13481.6 gi|242398768|ref|YP_002994192.1| - 0.0026 17.4 0.0 0.0078 15.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|242398768|ref|YP_002994192.1| - 0.0086 15.4 0.0 0.024 13.9 0.0 1.7 2 0 0 2 2 2 1 Rad51 IstB_IS21 PF01695.17 gi|242398768|ref|YP_002994192.1| - 0.012 15.3 0.0 0.2 11.4 0.0 2.2 1 1 1 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|242398768|ref|YP_002994192.1| - 0.025 15.0 0.0 0.037 14.4 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain GvpD PF07088.11 gi|242398768|ref|YP_002994192.1| - 0.069 11.8 0.0 0.071 11.7 0.0 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_5 PF07728.14 gi|242398768|ref|YP_002994192.1| - 0.084 12.9 0.0 0.17 11.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|242398768|ref|YP_002994192.1| - 0.09 13.1 0.0 0.17 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|242398768|ref|YP_002994192.1| - 0.12 12.4 0.1 0.3 11.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|242398768|ref|YP_002994192.1| - 0.13 12.0 0.2 8.2 6.1 0.0 2.6 1 1 1 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|242398768|ref|YP_002994192.1| - 0.16 11.7 0.1 1.1 9.0 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain TsaE PF02367.17 gi|242398768|ref|YP_002994192.1| - 0.16 12.0 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Arch_flagellin PF01917.16 gi|242398769|ref|YP_002994193.1| - 2.4e-16 60.3 0.8 2.9e-16 60.1 0.8 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_fla_DE PF04659.13 gi|242398770|ref|YP_002994194.1| - 4.4e-28 97.0 0.0 1.1e-27 95.7 0.0 1.7 1 0 0 1 1 1 1 Archaeal flagella protein V-SNARE_C PF12352.8 gi|242398770|ref|YP_002994194.1| - 0.0071 16.6 0.4 0.018 15.3 0.1 1.8 2 0 0 2 2 2 1 Snare region anchored in the vesicle membrane C-terminus Herpes_BLRF2 PF05812.12 gi|242398770|ref|YP_002994194.1| - 0.012 15.7 1.5 0.025 14.7 1.5 1.6 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein COG6 PF06419.11 gi|242398770|ref|YP_002994194.1| - 0.017 13.3 0.6 0.026 12.7 0.6 1.3 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 Rx_N PF18052.1 gi|242398770|ref|YP_002994194.1| - 0.018 15.3 1.1 2.7 8.3 0.2 2.8 2 0 0 2 2 2 0 Rx N-terminal domain RsbRD_N PF14361.6 gi|242398770|ref|YP_002994194.1| - 0.071 13.8 0.1 0.87 10.3 0.0 2.4 3 0 0 3 3 3 0 RsbT co-antagonist protein rsbRD N-terminal domain AAA_32 PF13654.6 gi|242398770|ref|YP_002994194.1| - 0.13 11.0 3.3 0.17 10.7 3.3 1.1 1 0 0 1 1 1 0 AAA domain DUF1564 PF07600.11 gi|242398770|ref|YP_002994194.1| - 0.14 11.9 1.2 0.24 11.1 1.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1564) MitMem_reg PF13012.6 gi|242398770|ref|YP_002994194.1| - 0.15 12.5 1.9 0.21 12.0 0.5 2.1 2 1 0 2 2 2 0 Maintenance of mitochondrial structure and function DUF1002 PF06207.11 gi|242398770|ref|YP_002994194.1| - 0.28 10.7 1.6 0.48 9.9 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1002) FlaC_arch PF05377.11 gi|242398771|ref|YP_002994195.1| - 2.5e-21 75.8 4.4 2.5e-21 75.8 4.4 2.9 3 1 0 3 3 2 1 Flagella accessory protein C (FlaC) TolA_bind_tri PF16331.5 gi|242398771|ref|YP_002994195.1| - 2.1e-05 24.5 5.5 0.059 13.4 0.0 2.8 2 1 0 2 2 2 2 TolA binding protein trimerisation Sec34 PF04136.15 gi|242398771|ref|YP_002994195.1| - 2.2e-05 24.3 2.3 0.00011 22.2 0.6 2.0 1 1 1 2 2 2 1 Sec34-like family Atg14 PF10186.9 gi|242398771|ref|YP_002994195.1| - 5.8e-05 22.3 10.7 0.00021 20.5 11.1 1.6 1 1 1 2 2 2 1 Vacuolar sorting 38 and autophagy-related subunit 14 Laminin_II PF06009.12 gi|242398771|ref|YP_002994195.1| - 0.00014 21.9 4.3 0.00039 20.4 4.4 1.7 1 1 0 1 1 1 1 Laminin Domain II DUF4349 PF14257.6 gi|242398771|ref|YP_002994195.1| - 0.00033 20.2 3.5 0.23 10.9 0.7 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF4349) EzrA PF06160.12 gi|242398771|ref|YP_002994195.1| - 0.00092 17.5 5.6 0.00092 17.5 5.6 2.0 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA Yuri_gagarin PF15934.5 gi|242398771|ref|YP_002994195.1| - 0.0012 18.7 4.4 0.0019 18.1 4.4 1.4 1 1 0 1 1 1 1 Yuri gagarin LPP PF04728.13 gi|242398771|ref|YP_002994195.1| - 0.0014 18.9 1.0 0.27 11.6 0.5 2.6 2 1 0 2 2 2 1 Lipoprotein leucine-zipper Snapin_Pallidin PF14712.6 gi|242398771|ref|YP_002994195.1| - 0.0032 17.9 11.1 0.44 11.0 1.7 2.7 1 1 1 2 2 2 2 Snapin/Pallidin Tektin PF03148.14 gi|242398771|ref|YP_002994195.1| - 0.0036 16.1 10.8 0.02 13.7 9.4 2.0 1 1 1 2 2 2 2 Tektin family MscS_porin PF12795.7 gi|242398771|ref|YP_002994195.1| - 0.0036 16.9 5.6 0.046 13.3 3.4 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel porin domain DUF2203 PF09969.9 gi|242398771|ref|YP_002994195.1| - 0.0046 17.7 9.2 0.33 11.7 2.4 2.5 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2203) DUF1664 PF07889.12 gi|242398771|ref|YP_002994195.1| - 0.0058 16.7 9.1 0.3 11.1 2.7 2.6 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) HMMR_N PF15905.5 gi|242398771|ref|YP_002994195.1| - 0.0058 16.1 15.7 0.012 15.1 15.7 1.4 1 1 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Tmemb_cc2 PF10267.9 gi|242398771|ref|YP_002994195.1| - 0.0066 15.7 13.4 0.0077 15.4 13.4 1.1 1 0 0 1 1 1 1 Predicted transmembrane and coiled-coil 2 protein DUF4618 PF15397.6 gi|242398771|ref|YP_002994195.1| - 0.0068 15.9 11.6 0.12 11.8 7.3 2.4 1 1 0 2 2 2 1 Domain of unknown function (DUF4618) KxDL PF10241.9 gi|242398771|ref|YP_002994195.1| - 0.0085 16.3 3.5 0.61 10.4 0.4 2.5 1 1 1 2 2 2 1 Uncharacterized conserved protein Nup54 PF13874.6 gi|242398771|ref|YP_002994195.1| - 0.011 15.8 2.0 0.016 15.3 1.8 1.3 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Clp_N PF02861.20 gi|242398771|ref|YP_002994195.1| - 0.012 15.8 1.9 3.4 7.9 0.1 3.1 3 0 0 3 3 2 0 Clp amino terminal domain, pathogenicity island component Vps54_N PF10475.9 gi|242398771|ref|YP_002994195.1| - 0.013 14.8 1.4 0.027 13.8 1.2 1.5 1 1 0 1 1 1 0 Vacuolar-sorting protein 54, of GARP complex PspA_IM30 PF04012.12 gi|242398771|ref|YP_002994195.1| - 0.014 15.0 6.6 0.48 10.0 3.5 2.1 2 0 0 2 2 2 0 PspA/IM30 family DUF4140 PF13600.6 gi|242398771|ref|YP_002994195.1| - 0.014 15.8 11.3 2 8.9 6.4 3.0 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) CENP-F_leu_zip PF10473.9 gi|242398771|ref|YP_002994195.1| - 0.015 15.4 17.9 0.73 9.8 13.9 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DivIC PF04977.15 gi|242398771|ref|YP_002994195.1| - 0.015 15.0 12.4 0.023 14.5 1.5 3.0 2 1 1 3 3 2 0 Septum formation initiator Vps51 PF08700.11 gi|242398771|ref|YP_002994195.1| - 0.015 15.3 2.9 3.7 7.7 1.1 2.7 2 1 0 2 2 2 0 Vps51/Vps67 Spc7 PF08317.11 gi|242398771|ref|YP_002994195.1| - 0.017 14.0 13.6 0.018 13.9 2.8 2.2 1 1 1 2 2 2 0 Spc7 kinetochore protein Prefoldin PF02996.17 gi|242398771|ref|YP_002994195.1| - 0.018 15.0 2.0 0.018 15.0 2.0 3.1 2 1 2 4 4 3 0 Prefoldin subunit DUF4407 PF14362.6 gi|242398771|ref|YP_002994195.1| - 0.021 14.2 1.2 0.029 13.7 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) NleF_casp_inhib PF16809.5 gi|242398771|ref|YP_002994195.1| - 0.022 14.7 7.8 0.43 10.5 3.4 2.3 1 1 0 2 2 2 0 NleF caspase inhibitor Baculo_PEP_C PF04513.12 gi|242398771|ref|YP_002994195.1| - 0.022 14.8 3.0 0.23 11.5 2.8 2.0 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DASH_Dam1 PF08653.10 gi|242398771|ref|YP_002994195.1| - 0.025 14.4 1.6 0.57 10.0 0.2 3.0 2 1 1 3 3 3 0 DASH complex subunit Dam1 Sec8_exocyst PF04048.14 gi|242398771|ref|YP_002994195.1| - 0.03 14.2 3.4 1.6 8.6 0.0 2.3 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Bap31_Bap29_C PF18035.1 gi|242398771|ref|YP_002994195.1| - 0.044 13.8 0.2 0.044 13.8 0.2 3.5 3 2 1 4 4 3 0 Bap31/Bap29 cytoplasmic coiled-coil domain DUF812 PF05667.11 gi|242398771|ref|YP_002994195.1| - 0.047 12.6 15.2 0.78 8.6 15.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF812) COMP PF11598.8 gi|242398771|ref|YP_002994195.1| - 0.048 14.1 2.0 0.84 10.2 0.1 2.6 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein BLOC1_2 PF10046.9 gi|242398771|ref|YP_002994195.1| - 0.049 13.9 11.7 0.055 13.8 5.6 2.4 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4200 PF13863.6 gi|242398771|ref|YP_002994195.1| - 0.05 14.0 18.1 2.8 8.4 14.3 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) HIP1_clath_bdg PF16515.5 gi|242398771|ref|YP_002994195.1| - 0.053 14.1 9.8 2.3 8.9 0.0 2.8 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 NPV_P10 PF05531.12 gi|242398771|ref|YP_002994195.1| - 0.06 13.8 7.0 0.22 12.0 2.7 2.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Hemagglutinin PF00509.18 gi|242398771|ref|YP_002994195.1| - 0.061 11.7 4.7 0.086 11.2 4.7 1.2 1 0 0 1 1 1 0 Haemagglutinin SKA2 PF16740.5 gi|242398771|ref|YP_002994195.1| - 0.062 13.1 9.4 0.18 11.6 4.2 2.2 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 Bcr-Abl_Oligo PF09036.10 gi|242398771|ref|YP_002994195.1| - 0.07 13.1 4.5 0.85 9.7 0.7 2.6 1 1 0 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain DUF2730 PF10805.8 gi|242398771|ref|YP_002994195.1| - 0.071 13.2 9.6 2.5 8.2 0.1 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) Fib_alpha PF08702.10 gi|242398771|ref|YP_002994195.1| - 0.072 13.3 12.5 0.24 11.6 7.8 2.2 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family MAD PF05557.13 gi|242398771|ref|YP_002994195.1| - 0.072 11.4 13.3 0.19 10.0 13.3 1.6 1 1 0 1 1 1 0 Mitotic checkpoint protein DUF5344 PF17279.2 gi|242398771|ref|YP_002994195.1| - 0.084 13.5 0.6 0.084 13.5 0.6 3.1 2 1 1 3 3 2 0 Family of unknown function (DUF5344) Prp19 PF08606.11 gi|242398771|ref|YP_002994195.1| - 0.084 12.9 1.8 0.72 9.9 0.0 2.6 3 0 0 3 3 2 0 Prp19/Pso4-like Fez1 PF06818.15 gi|242398771|ref|YP_002994195.1| - 0.11 12.9 10.6 0.37 11.2 10.7 1.8 1 1 0 1 1 1 0 Fez1 Fmp27_WPPW PF10359.9 gi|242398771|ref|YP_002994195.1| - 0.12 11.2 5.8 0.13 11.0 4.9 1.6 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain zf-CpG_bind_C PF12269.8 gi|242398771|ref|YP_002994195.1| - 0.13 12.1 4.4 3.3 7.4 0.0 2.4 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain DUF948 PF06103.11 gi|242398771|ref|YP_002994195.1| - 0.13 12.5 1.6 1 9.7 1.4 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.11 gi|242398771|ref|YP_002994195.1| - 0.14 10.1 3.7 0.5 8.3 3.5 1.6 1 1 0 1 1 1 0 Prominin TMPIT PF07851.13 gi|242398771|ref|YP_002994195.1| - 0.14 11.3 6.6 0.11 11.8 4.1 1.7 1 1 1 2 2 2 0 TMPIT-like protein Ran-binding PF05508.11 gi|242398771|ref|YP_002994195.1| - 0.18 10.8 9.4 0.28 10.1 9.2 1.5 1 1 0 1 1 1 0 RanGTP-binding protein Spc24 PF08286.11 gi|242398771|ref|YP_002994195.1| - 0.18 12.0 12.1 0.38 11.0 3.0 2.9 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 CALCOCO1 PF07888.11 gi|242398771|ref|YP_002994195.1| - 0.19 10.6 13.7 0.067 12.1 9.9 1.7 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Allexi_40kDa PF05549.11 gi|242398771|ref|YP_002994195.1| - 0.19 11.2 6.7 0.17 11.4 3.1 1.9 1 1 1 2 2 2 0 Allexivirus 40kDa protein ATG16 PF08614.11 gi|242398771|ref|YP_002994195.1| - 0.21 11.8 8.9 0.38 11.0 6.8 2.1 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF3618 PF12277.8 gi|242398771|ref|YP_002994195.1| - 0.22 11.8 3.3 4.8 7.5 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) TPR_MLP1_2 PF07926.12 gi|242398771|ref|YP_002994195.1| - 0.25 11.4 11.6 0.032 14.3 1.8 2.7 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Swi5 PF07061.11 gi|242398771|ref|YP_002994195.1| - 0.25 11.4 12.5 0.55 10.4 0.1 3.1 3 0 0 3 3 3 0 Swi5 ADIP PF11559.8 gi|242398771|ref|YP_002994195.1| - 0.26 11.4 10.0 0.84 9.7 5.1 2.8 2 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding LemA PF04011.12 gi|242398771|ref|YP_002994195.1| - 0.26 11.1 6.2 0.22 11.4 3.4 1.8 1 1 1 2 2 2 0 LemA family HemX PF04375.14 gi|242398771|ref|YP_002994195.1| - 0.27 10.5 5.5 0.21 10.8 3.3 1.7 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase SlyX PF04102.12 gi|242398771|ref|YP_002994195.1| - 0.27 11.9 8.3 0.28 11.8 1.4 2.9 2 1 1 3 3 2 0 SlyX DUF4041 PF13250.6 gi|242398771|ref|YP_002994195.1| - 0.3 11.0 0.2 0.3 11.0 0.2 2.1 2 1 1 3 3 1 0 Domain of unknown function (DUF4041) FlxA PF14282.6 gi|242398771|ref|YP_002994195.1| - 0.32 11.0 17.0 3.5 7.7 3.2 2.9 1 1 1 2 2 2 0 FlxA-like protein DUF3450 PF11932.8 gi|242398771|ref|YP_002994195.1| - 0.34 10.2 8.4 0.15 11.3 4.9 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) RPW8 PF05659.11 gi|242398771|ref|YP_002994195.1| - 0.35 10.6 13.1 1.3 8.8 0.3 2.9 1 1 2 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 bZIP_1 PF00170.21 gi|242398771|ref|YP_002994195.1| - 0.35 11.0 10.1 0.56 10.4 1.5 3.0 2 1 1 3 3 3 0 bZIP transcription factor DUF16 PF01519.16 gi|242398771|ref|YP_002994195.1| - 0.4 11.2 12.9 2.5 8.6 12.2 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF16 DLP_helical PF18709.1 gi|242398771|ref|YP_002994195.1| - 0.43 9.7 11.6 0.98 8.5 7.1 2.0 1 1 1 2 2 2 0 Dynamin-like helical domain APG6_N PF17675.1 gi|242398771|ref|YP_002994195.1| - 0.47 11.0 17.2 2.3 8.8 11.1 2.2 1 1 1 2 2 2 0 Apg6 coiled-coil region Phlebovirus_NSM PF07246.11 gi|242398771|ref|YP_002994195.1| - 0.47 9.8 10.7 0.17 11.3 6.5 1.9 1 1 0 1 1 1 0 Phlebovirus nonstructural protein NS-M USP8_interact PF08941.10 gi|242398771|ref|YP_002994195.1| - 0.52 10.1 4.4 6.6 6.5 0.8 2.3 1 1 1 2 2 2 0 USP8 interacting Prefoldin_2 PF01920.20 gi|242398771|ref|YP_002994195.1| - 0.52 10.3 17.3 2.5 8.1 8.9 3.4 1 1 1 2 2 1 0 Prefoldin subunit GrpE PF01025.19 gi|242398771|ref|YP_002994195.1| - 0.54 9.9 10.7 0.97 9.1 10.7 1.6 1 1 0 1 1 1 0 GrpE YabA PF06156.13 gi|242398771|ref|YP_002994195.1| - 0.64 10.7 11.5 0.6 10.8 1.5 2.9 1 1 2 3 3 2 0 Initiation control protein YabA Cnn_1N PF07989.11 gi|242398771|ref|YP_002994195.1| - 0.66 10.2 16.5 2.1 8.6 0.3 2.9 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 DUF2205 PF10224.9 gi|242398771|ref|YP_002994195.1| - 0.7 9.9 11.5 0.48 10.5 5.3 2.3 1 1 1 2 2 2 0 Short coiled-coil protein GTP-bdg_M PF16360.5 gi|242398771|ref|YP_002994195.1| - 0.74 10.5 9.7 22 5.7 0.1 3.4 2 1 1 3 3 3 0 GTP-binding GTPase Middle Region AAA_13 PF13166.6 gi|242398771|ref|YP_002994195.1| - 0.75 8.4 13.9 0.78 8.3 1.8 2.1 1 1 1 2 2 2 0 AAA domain DASH_Dad4 PF08650.10 gi|242398771|ref|YP_002994195.1| - 0.82 9.7 6.5 8.8 6.4 4.0 2.9 2 1 0 2 2 2 0 DASH complex subunit Dad4 EMP24_GP25L PF01105.24 gi|242398771|ref|YP_002994195.1| - 0.93 9.4 9.6 0.67 9.9 5.1 2.0 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD Med21 PF11221.8 gi|242398771|ref|YP_002994195.1| - 1 9.6 17.2 1 9.6 10.6 2.2 1 1 1 2 2 2 0 Subunit 21 of Mediator complex CorA PF01544.18 gi|242398771|ref|YP_002994195.1| - 1 8.6 6.3 1.3 8.2 6.3 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein YgaB PF14182.6 gi|242398771|ref|YP_002994195.1| - 1.3 9.5 14.9 0.41 11.1 2.4 3.0 1 1 2 3 3 2 0 YgaB-like protein V_ATPase_I PF01496.19 gi|242398771|ref|YP_002994195.1| - 1.4 6.7 8.2 3.7 5.3 8.4 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family MIP-T3_C PF17749.1 gi|242398771|ref|YP_002994195.1| - 1.5 8.8 15.4 5.6 6.9 9.9 2.3 2 0 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region DASH_Dad2 PF08654.10 gi|242398771|ref|YP_002994195.1| - 1.5 9.2 8.0 0.37 11.2 0.4 2.8 1 1 2 3 3 3 0 DASH complex subunit Dad2 DUF1192 PF06698.11 gi|242398771|ref|YP_002994195.1| - 1.7 8.7 13.9 0.48 10.5 0.4 3.7 3 1 1 4 4 4 0 Protein of unknown function (DUF1192) 5_nucleotid PF05761.14 gi|242398771|ref|YP_002994195.1| - 1.8 7.3 5.9 0.3 9.9 0.7 1.8 1 1 1 2 2 2 0 5' nucleotidase family DUF5320 PF17253.2 gi|242398771|ref|YP_002994195.1| - 1.8 9.6 8.9 23 6.1 0.9 3.2 2 1 1 3 3 3 0 Family of unknown function (DUF5320) XhlA PF10779.9 gi|242398771|ref|YP_002994195.1| - 1.9 8.7 18.2 0.063 13.5 7.9 2.6 3 0 0 3 3 2 0 Haemolysin XhlA ABC_tran_CTD PF16326.5 gi|242398771|ref|YP_002994195.1| - 2 8.8 22.2 4.5 7.6 0.6 3.1 2 1 1 3 3 3 0 ABC transporter C-terminal domain DUF724 PF05266.14 gi|242398771|ref|YP_002994195.1| - 2 8.2 12.9 15 5.3 12.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF724) Com_YlbF PF06133.11 gi|242398771|ref|YP_002994195.1| - 2.2 8.9 16.0 0.16 12.6 3.2 2.2 1 1 0 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA Occludin_ELL PF07303.13 gi|242398771|ref|YP_002994195.1| - 2.6 8.8 8.2 0.7 10.7 1.9 2.4 1 1 1 2 2 2 0 Occludin homology domain ISG65-75 PF11727.8 gi|242398771|ref|YP_002994195.1| - 2.7 7.1 5.8 6.1 6.0 1.6 2.3 1 1 1 2 2 2 0 Invariant surface glycoprotein PCRF PF03462.18 gi|242398771|ref|YP_002994195.1| - 3.1 7.6 9.0 22 4.9 9.0 1.9 1 1 0 1 1 1 0 PCRF domain DHR10 PF18595.1 gi|242398771|ref|YP_002994195.1| - 3.3 7.8 13.2 0.12 12.5 3.0 2.7 2 1 1 3 3 3 0 Designed helical repeat protein 10 domain Med4 PF10018.9 gi|242398771|ref|YP_002994195.1| - 3.6 7.2 12.8 0.28 10.8 0.9 2.9 1 1 2 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 BST2 PF16716.5 gi|242398771|ref|YP_002994195.1| - 3.6 8.2 14.1 2.6 8.7 3.5 3.1 2 1 1 3 3 3 0 Bone marrow stromal antigen 2 DUF4988 PF16378.5 gi|242398771|ref|YP_002994195.1| - 3.8 7.1 8.3 1.3 8.6 1.8 2.7 1 1 2 3 3 3 0 Domain of unknown function DUF4446 PF14584.6 gi|242398771|ref|YP_002994195.1| - 3.8 7.5 9.1 3.4 7.7 2.1 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) FapA PF03961.13 gi|242398771|ref|YP_002994195.1| - 4.7 5.7 16.8 0.022 13.4 3.0 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A WD40_alt PF14077.6 gi|242398771|ref|YP_002994195.1| - 4.9 7.1 8.4 0.27 11.1 0.9 2.6 2 1 1 3 3 2 0 Alternative WD40 repeat motif DUF5082 PF16888.5 gi|242398771|ref|YP_002994195.1| - 5.1 7.4 15.4 25 5.2 9.0 3.3 1 1 1 3 3 3 0 Domain of unknown function (DUF5082) Tropomyosin_1 PF12718.7 gi|242398771|ref|YP_002994195.1| - 5.5 7.2 19.1 3.6 7.7 11.3 2.4 1 1 1 2 2 2 0 Tropomyosin like TssO PF17561.2 gi|242398771|ref|YP_002994195.1| - 5.5 7.1 15.0 34 4.5 14.8 2.2 1 1 0 1 1 1 0 Type VI secretion system, TssO Fungal_TACC PF12709.7 gi|242398771|ref|YP_002994195.1| - 6.7 7.2 16.3 3.5 8.1 2.3 3.3 1 1 2 3 3 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins DUF4094 PF13334.6 gi|242398771|ref|YP_002994195.1| - 7.4 7.1 11.2 60 4.2 0.2 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) Cauli_AT PF03233.13 gi|242398771|ref|YP_002994195.1| - 8.2 6.3 14.8 5.7 6.8 8.4 2.3 1 1 0 2 2 2 0 Aphid transmission protein DUF1090 PF06476.12 gi|242398771|ref|YP_002994195.1| - 8.4 6.6 12.8 16 5.7 8.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1090) CCDC-167 PF15188.6 gi|242398771|ref|YP_002994195.1| - 8.7 6.8 20.2 3.2 8.2 6.3 2.7 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 NBP1 PF08537.10 gi|242398771|ref|YP_002994195.1| - 9 5.6 14.5 22 4.3 3.5 2.1 1 1 1 2 2 2 0 Fungal Nap binding protein NBP1 TSC22 PF01166.18 gi|242398771|ref|YP_002994195.1| - 9.7 6.6 13.6 0.7 10.2 0.5 3.9 2 1 3 5 5 4 0 TSC-22/dip/bun family Arch_flagellin PF01917.16 gi|242398772|ref|YP_002994196.1| - 1.8e-46 158.3 8.4 2.1e-46 158.1 8.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Methyltransf_31 PF13847.6 gi|242398773|ref|YP_002994197.1| - 3.9e-16 59.2 0.0 6.7e-16 58.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|242398773|ref|YP_002994197.1| - 9.3e-11 42.4 0.0 1.9e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|242398773|ref|YP_002994197.1| - 2e-10 41.2 0.0 4.9e-10 40.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|242398773|ref|YP_002994197.1| - 3.8e-10 39.5 0.0 6.4e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|242398773|ref|YP_002994197.1| - 5.1e-10 39.9 0.0 1e-09 38.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|242398773|ref|YP_002994197.1| - 9e-10 38.6 0.0 1.4e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|242398773|ref|YP_002994197.1| - 3.8e-06 26.8 0.0 5.6e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|242398773|ref|YP_002994197.1| - 0.0097 15.5 0.0 0.023 14.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Rsm22 PF09243.10 gi|242398773|ref|YP_002994197.1| - 0.0097 15.2 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 NodS PF05401.11 gi|242398773|ref|YP_002994197.1| - 0.019 14.6 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 Nodulation protein S (NodS) DUF1495 PF07381.11 gi|242398774|ref|YP_002994198.1| - 1.6e-34 117.5 0.1 1.9e-34 117.3 0.1 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_5 PF01022.20 gi|242398774|ref|YP_002994198.1| - 0.011 15.6 0.2 0.026 14.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF4364 PF14277.6 gi|242398774|ref|YP_002994198.1| - 0.017 14.9 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) SSF PF00474.17 gi|242398776|ref|YP_002994200.1| - 8.4e-52 176.4 31.6 1.1e-51 176.0 31.6 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF257 PF03192.13 gi|242398777|ref|YP_002994201.1| - 5.5e-53 179.8 0.9 6.3e-53 179.6 0.9 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 Enolase_C PF00113.22 gi|242398778|ref|YP_002994202.1| - 8e-128 425.8 0.4 1e-127 425.5 0.4 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|242398778|ref|YP_002994202.1| - 3.9e-59 198.5 0.0 6.2e-59 197.9 0.0 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|242398778|ref|YP_002994202.1| - 1.9e-07 30.9 0.0 2.8e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|242398778|ref|YP_002994202.1| - 7.9e-05 21.9 0.1 0.00024 20.4 0.0 1.8 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus DpnD-PcfM PF14207.6 gi|242398778|ref|YP_002994202.1| - 0.066 13.1 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 DpnD/PcfM-like protein AAA_15 PF13175.6 gi|242398779|ref|YP_002994203.1| - 1.6e-10 41.3 0.6 1.8e-10 41.1 0.6 1.0 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|242398779|ref|YP_002994203.1| - 2.5e-07 30.3 0.1 2.6e-07 30.3 0.1 1.0 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|242398779|ref|YP_002994203.1| - 3.1e-06 27.9 0.2 3.5e-06 27.7 0.2 1.0 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|242398779|ref|YP_002994203.1| - 0.0052 16.5 0.0 0.0056 16.4 0.0 1.1 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|242398779|ref|YP_002994203.1| - 0.032 12.9 0.1 0.033 12.8 0.1 1.0 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 gi|242398779|ref|YP_002994203.1| - 0.032 14.0 1.4 0.041 13.7 1.4 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|242398781|ref|YP_002994205.1| - 1.3e-17 64.6 0.2 2e-17 64.0 0.2 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|242398781|ref|YP_002994205.1| - 2.1e-16 60.6 0.1 3.7e-16 59.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system PIN PF01850.21 gi|242398782|ref|YP_002994206.1| - 0.0056 17.2 0.3 0.0085 16.6 0.3 1.3 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|242398782|ref|YP_002994206.1| - 0.025 15.1 0.9 0.029 14.8 0.9 1.2 1 0 0 1 1 1 0 PIN domain PIN_3 PF13470.6 gi|242398782|ref|YP_002994206.1| - 0.1 13.4 0.0 0.11 13.3 0.0 1.3 1 1 0 1 1 1 0 PIN domain Fibrillarin PF01269.17 gi|242398783|ref|YP_002994207.1| - 5.3e-101 336.5 0.0 6.2e-101 336.2 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|242398783|ref|YP_002994207.1| - 0.00015 21.6 0.0 0.0002 21.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|242398783|ref|YP_002994207.1| - 0.0019 18.0 0.0 0.0034 17.1 0.0 1.4 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.19 gi|242398783|ref|YP_002994207.1| - 0.028 14.5 0.0 0.042 14.0 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase TehB PF03848.14 gi|242398783|ref|YP_002994207.1| - 0.19 11.1 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Nop PF01798.18 gi|242398784|ref|YP_002994208.1| - 1.9e-72 243.5 0.0 2.8e-72 242.9 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin Snf7 PF03357.21 gi|242398784|ref|YP_002994208.1| - 0.0047 16.5 0.5 0.0047 16.5 0.5 2.4 2 0 0 2 2 2 1 Snf7 Peptidase_S49_N PF08496.10 gi|242398784|ref|YP_002994208.1| - 3.6 7.6 7.7 7 6.7 7.7 1.5 1 0 0 1 1 1 0 Peptidase family S49 N-terminal ACP_syn_III_C PF08541.10 gi|242398785|ref|YP_002994209.1| - 7.7e-11 42.0 0.1 5.2e-10 39.4 0.0 2.4 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 gi|242398785|ref|YP_002994209.1| - 6e-05 22.8 1.9 0.00028 20.7 0.5 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_N PF01154.17 gi|242398785|ref|YP_002994209.1| - 0.00026 20.9 0.0 0.00043 20.2 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|242398785|ref|YP_002994209.1| - 0.0016 18.1 0.1 0.041 13.5 0.0 2.1 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|242398785|ref|YP_002994209.1| - 0.0052 16.2 0.0 0.0073 15.7 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|242398785|ref|YP_002994209.1| - 0.14 11.7 1.0 14 5.2 0.7 2.5 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain Thiolase_N PF00108.23 gi|242398786|ref|YP_002994210.1| - 1.4e-25 90.2 0.9 5e-25 88.3 0.9 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|242398786|ref|YP_002994210.1| - 1.5e-09 37.5 0.5 1.5e-09 37.5 0.5 2.8 3 1 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|242398786|ref|YP_002994210.1| - 2.9e-06 27.0 4.6 7.6e-05 22.4 2.1 2.7 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|242398786|ref|YP_002994210.1| - 0.0051 16.6 0.9 2.9 7.8 0.0 2.4 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|242398786|ref|YP_002994210.1| - 0.019 15.0 1.2 2 8.5 0.0 3.3 3 1 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|242398787|ref|YP_002994211.1| - 2.2e-21 75.6 0.2 3.3e-21 75.1 0.2 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|242398787|ref|YP_002994211.1| - 3.8e-14 52.2 0.9 5.3e-14 51.8 0.9 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|242398787|ref|YP_002994211.1| - 0.0013 18.4 0.4 0.0018 17.9 0.4 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 TF_Zn_Ribbon PF08271.12 gi|242398787|ref|YP_002994211.1| - 0.0062 16.0 2.7 0.55 9.8 0.1 2.6 2 0 0 2 2 2 1 TFIIB zinc-binding DZR PF12773.7 gi|242398787|ref|YP_002994211.1| - 0.0093 16.0 0.7 0.014 15.4 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|242398787|ref|YP_002994211.1| - 0.012 15.6 0.2 0.016 15.1 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons Ribosomal_L32p PF01783.23 gi|242398787|ref|YP_002994211.1| - 0.017 15.4 1.1 0.027 14.7 1.1 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family HypA PF01155.19 gi|242398787|ref|YP_002994211.1| - 0.033 14.2 0.8 0.064 13.3 0.3 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|242398787|ref|YP_002994211.1| - 0.065 13.2 2.0 3.7 7.6 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|242398787|ref|YP_002994211.1| - 0.11 12.6 6.0 0.44 10.7 6.0 2.0 1 1 0 1 1 1 0 Zinc ribbon domain HTH_Crp_2 PF13545.6 gi|242398787|ref|YP_002994211.1| - 0.12 12.4 0.0 0.26 11.3 0.0 1.5 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain zf-RRN7 PF11781.8 gi|242398787|ref|YP_002994211.1| - 0.13 12.0 0.1 0.13 12.0 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_Tnp_IS1595 PF12760.7 gi|242398787|ref|YP_002994211.1| - 0.14 12.2 0.4 0.14 12.2 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|242398787|ref|YP_002994211.1| - 0.14 12.4 0.4 21 5.4 0.0 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_4 PF13717.6 gi|242398787|ref|YP_002994211.1| - 0.27 11.2 2.8 7.2 6.6 0.8 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|242398787|ref|YP_002994211.1| - 0.35 10.3 6.9 2.3 7.7 7.3 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|242398787|ref|YP_002994211.1| - 0.45 10.3 7.3 0.98 9.2 7.3 1.6 1 1 0 1 1 1 0 zinc-ribbon domain XPA_N PF01286.18 gi|242398787|ref|YP_002994211.1| - 0.9 9.6 3.2 20 5.4 0.3 2.9 3 0 0 3 3 3 0 XPA protein N-terminal TFIIS_C PF01096.18 gi|242398787|ref|YP_002994211.1| - 1 9.3 3.4 18 5.3 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin_2 PF18073.1 gi|242398787|ref|YP_002994211.1| - 1.6 8.5 6.3 8.8 6.2 6.3 2.1 1 1 0 1 1 1 0 Rubredoxin metal binding domain zf-NADH-PPase PF09297.11 gi|242398787|ref|YP_002994211.1| - 1.7 8.4 5.2 4.3 7.1 0.6 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain EamA PF00892.20 gi|242398788|ref|YP_002994212.1| - 9.3e-16 58.2 9.4 1.2e-15 57.9 9.4 1.0 1 0 0 1 1 1 1 EamA-like transporter family DUF3007 PF11460.8 gi|242398788|ref|YP_002994212.1| - 0.15 12.4 1.0 0.2 11.9 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) Acetyltransf_1 PF00583.25 gi|242398789|ref|YP_002994213.1| - 1.4e-22 80.2 0.5 1.8e-22 79.8 0.5 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|242398789|ref|YP_002994213.1| - 2.8e-16 59.6 0.0 4.7e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|242398789|ref|YP_002994213.1| - 4.9e-15 55.7 0.2 8.2e-15 55.0 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|242398789|ref|YP_002994213.1| - 4.7e-08 32.9 0.0 7.4e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|242398789|ref|YP_002994213.1| - 1e-06 29.0 0.1 1.3e-06 28.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|242398789|ref|YP_002994213.1| - 0.00017 22.2 0.2 0.00023 21.8 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|242398789|ref|YP_002994213.1| - 0.00024 21.2 0.1 0.00035 20.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|242398789|ref|YP_002994213.1| - 0.00052 20.1 0.0 0.0012 19.0 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|242398789|ref|YP_002994213.1| - 0.0013 18.2 0.1 0.0017 17.9 0.1 1.3 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_18 PF18014.1 gi|242398789|ref|YP_002994213.1| - 0.0066 16.3 0.0 0.023 14.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|242398789|ref|YP_002994213.1| - 0.028 14.1 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_3 PF01381.22 gi|242398790|ref|YP_002994214.1| - 7.5e-10 38.7 0.1 1.4e-09 37.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|242398790|ref|YP_002994214.1| - 4.3e-06 26.7 0.5 8.6e-06 25.7 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4428 PF14471.6 gi|242398790|ref|YP_002994214.1| - 0.00041 20.2 0.2 0.0009 19.1 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) HTH_31 PF13560.6 gi|242398790|ref|YP_002994214.1| - 0.0012 19.1 0.1 0.0028 18.0 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain zf-UDP PF14569.6 gi|242398790|ref|YP_002994214.1| - 0.0016 18.5 0.0 0.0027 17.8 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding RING-finger HTH_24 PF13412.6 gi|242398790|ref|YP_002994214.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|242398790|ref|YP_002994214.1| - 0.12 12.9 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF356 PF04009.12 gi|242398791|ref|YP_002994215.1| - 3.3e-36 123.8 0.1 4e-36 123.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF356) ABC_tran PF00005.27 gi|242398795|ref|YP_002994219.1| - 7.1e-27 94.6 0.0 1.2e-26 93.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242398795|ref|YP_002994219.1| - 1.4e-11 44.8 0.3 2.3e-07 30.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|242398795|ref|YP_002994219.1| - 0.00071 19.4 0.0 0.36 10.5 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|242398795|ref|YP_002994219.1| - 0.0014 19.1 0.6 0.003 18.1 0.6 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|242398795|ref|YP_002994219.1| - 0.0057 16.1 0.1 0.27 10.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|242398795|ref|YP_002994219.1| - 0.021 14.6 0.0 0.038 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|242398795|ref|YP_002994219.1| - 0.032 13.9 0.3 0.15 11.7 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|242398795|ref|YP_002994219.1| - 0.033 14.5 0.0 0.08 13.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|242398795|ref|YP_002994219.1| - 0.1 13.0 0.3 0.18 12.2 0.3 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|242398795|ref|YP_002994219.1| - 0.13 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC2_membrane_2 PF12679.7 gi|242398796|ref|YP_002994220.1| - 3.3e-14 52.9 18.0 5.1e-14 52.2 18.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|242398796|ref|YP_002994220.1| - 0.00017 21.6 13.6 0.00017 21.6 13.6 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|242398796|ref|YP_002994220.1| - 0.025 14.1 19.4 0.17 11.4 19.6 2.3 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|242398796|ref|YP_002994220.1| - 0.057 12.5 26.5 0.1 11.7 26.5 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein MM_CoA_mutase PF01642.22 gi|242398798|ref|YP_002994222.1| - 2.7e-243 808.2 0.1 3.1e-243 808.0 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase DUF4911 PF16256.5 gi|242398798|ref|YP_002994222.1| - 0.1 12.6 0.1 0.95 9.5 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4911) LRIF1 PF15741.5 gi|242398798|ref|YP_002994222.1| - 0.33 9.4 3.2 0.49 8.9 3.2 1.2 1 0 0 1 1 1 0 Ligand-dependent nuclear receptor-interacting factor 1 GPI PF06560.11 gi|242398799|ref|YP_002994223.1| - 1.3e-41 141.9 0.1 1.5e-41 141.6 0.1 1.0 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|242398799|ref|YP_002994223.1| - 4e-08 32.8 0.0 8.8e-08 31.8 0.0 1.6 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|242398799|ref|YP_002994223.1| - 0.00014 21.4 0.0 0.00019 21.1 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|242398799|ref|YP_002994223.1| - 0.034 13.8 0.0 0.076 12.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|242398799|ref|YP_002994223.1| - 0.05 13.2 0.0 0.073 12.7 0.0 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Peptidase_M50 PF02163.22 gi|242398800|ref|YP_002994224.1| - 7.6e-08 31.9 8.9 6.5e-06 25.6 0.4 3.2 2 1 1 3 3 3 3 Peptidase family M50 DUF2678 PF10856.8 gi|242398800|ref|YP_002994224.1| - 0.068 13.1 0.5 9.1 6.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2678) KH_2 PF07650.17 gi|242398801|ref|YP_002994225.1| - 2.6e-06 27.1 1.5 2.7e-06 27.1 1.5 1.0 1 0 0 1 1 1 1 KH domain KH_7 PF17214.3 gi|242398801|ref|YP_002994225.1| - 0.0018 18.2 0.8 0.0022 17.9 0.8 1.3 1 1 0 1 1 1 1 KH domain KH_5 PF13184.6 gi|242398801|ref|YP_002994225.1| - 0.041 14.0 0.7 0.067 13.3 0.7 1.3 1 0 0 1 1 1 0 NusA-like KH domain NYN PF01936.18 gi|242398802|ref|YP_002994226.1| - 3.4e-12 47.1 0.2 4.7e-12 46.6 0.2 1.2 1 0 0 1 1 1 1 NYN domain CoA_binding_2 PF13380.6 gi|242398802|ref|YP_002994226.1| - 0.026 15.0 0.1 0.035 14.6 0.1 1.1 1 0 0 1 1 1 0 CoA binding domain Cupin_2 PF07883.11 gi|242398804|ref|YP_002994228.1| - 2e-12 46.6 0.0 2.6e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|242398804|ref|YP_002994228.1| - 5.6e-06 26.0 0.0 8e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|242398804|ref|YP_002994228.1| - 5.7e-06 26.3 0.0 8.3e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain DMSP_lyase PF16867.5 gi|242398804|ref|YP_002994228.1| - 0.00016 21.3 0.0 0.00022 20.9 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_1 PF00190.22 gi|242398804|ref|YP_002994228.1| - 0.002 17.8 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 Cupin Hydantoinase_A PF01968.18 gi|242398805|ref|YP_002994229.1| - 3e-92 309.0 0.0 5.6e-92 308.1 0.0 1.5 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|242398805|ref|YP_002994229.1| - 3.3e-46 157.2 0.0 9.2e-46 155.8 0.0 1.8 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|242398805|ref|YP_002994229.1| - 0.16 10.5 0.2 10 4.6 0.0 2.3 2 0 0 2 2 2 0 MutL protein Hydantoinase_B PF02538.14 gi|242398806|ref|YP_002994230.1| - 9.1e-158 525.9 0.0 1e-157 525.7 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Peptidase_M24 PF00557.24 gi|242398807|ref|YP_002994231.1| - 5e-66 222.4 0.3 6.8e-66 221.9 0.3 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|242398807|ref|YP_002994231.1| - 2e-17 64.1 0.0 3.7e-17 63.2 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Transp_cyt_pur PF02133.15 gi|242398808|ref|YP_002994232.1| - 4.7e-16 58.6 47.1 2.1e-15 56.4 47.1 1.8 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin HTH_24 PF13412.6 gi|242398810|ref|YP_002994234.1| - 1e-11 44.2 1.5 2.2e-11 43.2 1.5 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|242398810|ref|YP_002994234.1| - 1.3e-11 44.1 3.1 2.2e-11 43.4 3.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|242398810|ref|YP_002994234.1| - 3.2e-06 27.0 1.6 7.9e-06 25.7 1.6 1.7 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|242398810|ref|YP_002994234.1| - 0.00011 21.9 1.3 0.0002 21.0 1.3 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|242398810|ref|YP_002994234.1| - 0.00021 21.0 0.2 0.00041 20.0 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|242398810|ref|YP_002994234.1| - 0.0028 17.3 0.1 0.0062 16.2 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|242398810|ref|YP_002994234.1| - 0.0034 17.2 0.3 0.02 14.7 0.1 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|242398810|ref|YP_002994234.1| - 0.004 17.3 0.1 0.0068 16.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|242398810|ref|YP_002994234.1| - 0.0047 17.0 0.0 0.69 10.0 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Trp_repressor PF01371.19 gi|242398810|ref|YP_002994234.1| - 0.0067 16.5 0.2 0.015 15.4 0.2 1.7 1 0 0 1 1 1 1 Trp repressor protein Fe_dep_repress PF01325.19 gi|242398810|ref|YP_002994234.1| - 0.0091 16.2 0.1 0.017 15.3 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|242398810|ref|YP_002994234.1| - 0.0094 15.9 0.4 0.018 14.9 0.1 1.6 2 0 0 2 2 1 1 MarR family HTH_29 PF13551.6 gi|242398810|ref|YP_002994234.1| - 0.013 15.5 0.2 0.025 14.6 0.2 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_7 PF02796.15 gi|242398810|ref|YP_002994234.1| - 0.02 15.0 0.2 0.2 11.8 0.1 2.6 2 1 1 3 3 3 0 Helix-turn-helix domain of resolvase Mga PF05043.13 gi|242398810|ref|YP_002994234.1| - 0.022 15.4 0.2 1.8 9.2 0.1 2.4 1 1 1 2 2 2 0 Mga helix-turn-helix domain TFIIE_alpha PF02002.17 gi|242398810|ref|YP_002994234.1| - 0.024 14.5 2.1 0.025 14.4 0.8 1.7 2 0 0 2 2 2 0 TFIIE alpha subunit Baculo_gp41 PF04700.12 gi|242398810|ref|YP_002994234.1| - 0.025 14.3 0.2 0.034 13.9 0.2 1.3 1 0 0 1 1 1 0 Structural glycoprotein p40/gp41 conserved region HTH_Tnp_ISL3 PF13542.6 gi|242398810|ref|YP_002994234.1| - 0.032 13.6 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 gi|242398810|ref|YP_002994234.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Rep_2 PF01719.17 gi|242398810|ref|YP_002994234.1| - 0.062 13.1 0.2 0.11 12.3 0.2 1.3 1 0 0 1 1 1 0 Plasmid replication protein DUF603 PF04645.12 gi|242398810|ref|YP_002994234.1| - 0.08 12.6 0.1 0.24 11.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF603 HTH_IclR PF09339.10 gi|242398810|ref|YP_002994234.1| - 0.084 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|242398811|ref|YP_002994235.1| - 0.00028 20.4 0.1 0.45 10.1 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|242398811|ref|YP_002994235.1| - 0.00032 21.0 0.2 0.00038 20.8 0.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-RRN7 PF11781.8 gi|242398811|ref|YP_002994235.1| - 0.0074 16.0 2.6 0.01 15.5 0.1 2.1 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ribbon_3 PF13248.6 gi|242398811|ref|YP_002994235.1| - 0.054 12.9 0.9 8.2 6.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|242398811|ref|YP_002994235.1| - 0.056 13.6 1.7 0.19 11.9 1.7 1.8 1 1 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-piccolo PF05715.13 gi|242398811|ref|YP_002994235.1| - 0.06 13.5 0.2 0.09 12.9 0.2 1.3 1 1 0 1 1 1 0 Piccolo Zn-finger Ribosomal_L37e PF01907.19 gi|242398811|ref|YP_002994235.1| - 0.063 13.4 1.2 2.4 8.4 0.0 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e Prim_Zn_Ribbon PF08273.12 gi|242398811|ref|YP_002994235.1| - 0.07 13.4 4.7 0.37 11.1 4.7 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Nudix_N_2 PF14803.6 gi|242398811|ref|YP_002994235.1| - 0.087 12.8 1.0 3.8 7.5 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal UPF0547 PF10571.9 gi|242398811|ref|YP_002994235.1| - 0.36 11.0 4.6 5.9 7.1 0.1 2.5 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 TraB PF01963.17 gi|242398812|ref|YP_002994236.1| - 1.6e-15 57.7 0.5 5e-15 56.1 0.5 1.6 1 1 0 1 1 1 1 TraB family Lactamase_B_2 PF12706.7 gi|242398813|ref|YP_002994237.1| - 2.4e-18 66.4 0.0 4.5e-08 32.9 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|242398813|ref|YP_002994237.1| - 5.7e-07 29.7 0.0 1.5e-06 28.3 0.0 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|242398813|ref|YP_002994237.1| - 0.00018 21.2 0.0 0.00032 20.3 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease PDEase_II PF02112.15 gi|242398813|ref|YP_002994237.1| - 0.049 12.7 0.0 0.068 12.3 0.0 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II ThaI PF15514.6 gi|242398813|ref|YP_002994237.1| - 0.082 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease ThaI TPR_12 PF13424.6 gi|242398815|ref|YP_002994239.1| - 1.2e-07 31.9 2.4 1.2e-07 31.9 2.4 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|242398815|ref|YP_002994239.1| - 6e-06 26.0 15.1 0.00078 19.4 0.4 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat RPN7 PF10602.9 gi|242398815|ref|YP_002994239.1| - 2.2e-05 24.2 1.5 2.2e-05 24.2 1.5 1.8 2 1 0 2 2 2 1 26S proteasome subunit RPN7 TPR_6 PF13174.6 gi|242398815|ref|YP_002994239.1| - 0.00015 22.2 6.0 0.22 12.2 0.3 3.8 3 0 0 3 3 3 2 Tetratricopeptide repeat SNAP PF14938.6 gi|242398815|ref|YP_002994239.1| - 0.00021 20.8 0.2 0.00054 19.5 0.2 1.7 1 0 0 1 1 1 1 Soluble NSF attachment protein, SNAP TPR_1 PF00515.28 gi|242398815|ref|YP_002994239.1| - 0.00025 20.7 17.3 0.0012 18.6 0.8 4.1 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|242398815|ref|YP_002994239.1| - 0.00033 20.1 1.2 0.0011 18.4 1.2 1.7 1 1 0 1 1 1 1 MalT-like TPR region TPR_19 PF14559.6 gi|242398815|ref|YP_002994239.1| - 0.00058 20.3 12.4 0.028 14.9 0.4 4.2 2 1 3 5 5 5 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|242398815|ref|YP_002994239.1| - 0.0019 18.1 5.3 1.1 9.5 0.7 3.4 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_20 PF14561.6 gi|242398815|ref|YP_002994239.1| - 0.006 16.9 2.4 0.067 13.5 0.1 2.9 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_21 PF09976.9 gi|242398815|ref|YP_002994239.1| - 0.0072 16.1 2.0 0.03 14.0 0.7 2.3 2 1 0 2 2 2 1 Tetratricopeptide repeat-like domain Utp13 PF08625.11 gi|242398815|ref|YP_002994239.1| - 0.0083 16.0 0.1 1.1 9.2 0.0 2.6 2 2 0 2 2 2 1 Utp13 specific WD40 associated domain RPW8 PF05659.11 gi|242398815|ref|YP_002994239.1| - 0.012 15.3 1.7 2 8.1 1.8 2.9 2 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 TPR_16 PF13432.6 gi|242398815|ref|YP_002994239.1| - 0.017 15.7 1.2 0.23 12.1 0.1 2.8 3 0 0 3 3 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|242398815|ref|YP_002994239.1| - 0.028 15.2 2.6 5.2 8.2 0.1 4.1 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|242398815|ref|YP_002994239.1| - 0.031 14.5 1.4 0.031 14.5 1.4 4.8 5 0 0 5 5 5 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|242398815|ref|YP_002994239.1| - 0.062 13.5 3.5 0.3 11.4 1.6 2.9 1 1 2 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 DUF2225 PF09986.9 gi|242398815|ref|YP_002994239.1| - 0.43 10.3 5.9 1.9 8.2 0.7 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_11 PF13414.6 gi|242398815|ref|YP_002994239.1| - 0.47 10.2 9.6 4.5 7.0 0.3 4.2 4 1 1 5 5 4 0 TPR repeat MUG113 PF13455.6 gi|242398815|ref|YP_002994239.1| - 0.5 11.1 2.3 0.73 10.6 0.0 2.5 3 0 0 3 3 2 0 Meiotically up-regulated gene 113 TPR_10 PF13374.6 gi|242398815|ref|YP_002994239.1| - 3.1 7.8 11.1 2.9 7.9 0.6 3.8 3 0 0 3 3 3 0 Tetratricopeptide repeat Acetyltransf_1 PF00583.25 gi|242398816|ref|YP_002994240.1| - 4.3e-12 46.3 0.7 7.1e-12 45.6 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|242398816|ref|YP_002994240.1| - 7.9e-12 45.2 0.1 2.4e-11 43.7 0.0 1.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|242398816|ref|YP_002994240.1| - 1.8e-10 41.1 0.1 3.6e-10 40.1 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|242398816|ref|YP_002994240.1| - 1.7e-06 28.1 0.0 4.5e-06 26.8 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|242398816|ref|YP_002994240.1| - 0.00096 19.1 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|242398816|ref|YP_002994240.1| - 0.0017 18.4 0.1 0.035 14.2 0.0 2.2 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|242398816|ref|YP_002994240.1| - 0.035 14.2 0.0 0.11 12.7 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain NTP_transf_3 PF12804.7 gi|242398817|ref|YP_002994241.1| - 1.8e-31 109.6 0.0 2.2e-31 109.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|242398817|ref|YP_002994241.1| - 2.5e-10 40.6 0.0 8.5e-10 38.9 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|242398817|ref|YP_002994241.1| - 3.5e-07 30.2 0.0 4e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.16 gi|242398817|ref|YP_002994241.1| - 0.0001 21.5 0.0 0.00015 21.0 0.0 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transferase PF00483.23 gi|242398817|ref|YP_002994241.1| - 0.00029 20.5 0.3 0.00068 19.3 0.1 1.7 2 0 0 2 2 2 1 Nucleotidyl transferase NAD_kinase PF01513.21 gi|242398818|ref|YP_002994242.1| - 2.3e-43 148.5 0.0 2.6e-43 148.3 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|242398818|ref|YP_002994242.1| - 1.9e-06 27.5 0.2 1.1e-05 25.1 0.0 2.4 3 0 0 3 3 3 1 Diacylglycerol kinase catalytic domain Ion_trans_2 PF07885.16 gi|242398819|ref|YP_002994243.1| - 3.6e-13 49.3 8.1 9.8e-13 47.9 8.4 1.6 1 1 0 1 1 1 1 Ion channel zf-C3Hc3H PF13891.6 gi|242398819|ref|YP_002994243.1| - 0.003 17.9 0.0 0.0053 17.1 0.0 1.3 1 0 0 1 1 1 1 Potential DNA-binding domain Pentapeptide_3 PF13576.6 gi|242398819|ref|YP_002994243.1| - 0.0062 16.7 0.1 8.1 6.7 0.0 3.6 4 1 0 4 4 4 2 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.6 gi|242398819|ref|YP_002994243.1| - 0.018 15.2 0.2 0.43 10.8 0.0 2.8 2 1 0 2 2 2 0 Pentapeptide repeats (9 copies) zf-TRM13_CCCH PF11722.8 gi|242398819|ref|YP_002994243.1| - 0.064 13.0 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 CCCH zinc finger in TRM13 protein ParBc PF02195.18 gi|242398820|ref|YP_002994244.1| - 1.2e-09 38.3 0.0 1.8e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|242398820|ref|YP_002994244.1| - 0.00087 19.4 0.1 0.0014 18.7 0.1 1.5 1 1 0 1 1 1 1 Putative ParB-like nuclease DUF3926 PF13080.6 gi|242398820|ref|YP_002994244.1| - 0.11 12.4 0.0 4.1 7.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3926) ADK PF00406.22 gi|242398821|ref|YP_002994245.1| - 1.9e-39 135.2 0.0 2.3e-39 134.9 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|242398821|ref|YP_002994245.1| - 2e-20 73.6 0.0 3e-20 73.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|242398821|ref|YP_002994245.1| - 1.2e-16 60.3 2.7 2e-16 59.7 2.7 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_33 PF13671.6 gi|242398821|ref|YP_002994245.1| - 6.4e-07 29.6 0.0 9.1e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|242398821|ref|YP_002994245.1| - 2.7e-06 28.0 0.1 6.3e-06 26.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|242398821|ref|YP_002994245.1| - 0.00083 19.2 0.0 0.0016 18.2 0.0 1.4 2 0 0 2 2 1 1 Cytidylate kinase AAA_22 PF13401.6 gi|242398821|ref|YP_002994245.1| - 0.0029 17.9 0.0 0.0058 16.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|242398821|ref|YP_002994245.1| - 0.0048 16.2 0.0 0.014 14.6 0.0 1.7 1 1 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.17 gi|242398821|ref|YP_002994245.1| - 0.03 14.0 0.0 0.06 13.0 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase AAA PF00004.29 gi|242398821|ref|YP_002994245.1| - 0.037 14.5 0.0 0.055 13.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|242398821|ref|YP_002994245.1| - 0.044 13.7 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_5 PF07728.14 gi|242398821|ref|YP_002994245.1| - 0.063 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|242398821|ref|YP_002994245.1| - 0.063 13.0 0.0 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain CobU PF02283.16 gi|242398821|ref|YP_002994245.1| - 0.065 12.8 0.0 0.097 12.2 0.0 1.3 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ABC_tran PF00005.27 gi|242398821|ref|YP_002994245.1| - 0.073 13.6 0.0 0.09 13.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 gi|242398821|ref|YP_002994245.1| - 0.1 13.0 0.0 0.21 12.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Viral_helicase1 PF01443.18 gi|242398821|ref|YP_002994245.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|242398821|ref|YP_002994245.1| - 0.11 12.5 0.1 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|242398821|ref|YP_002994245.1| - 0.12 12.6 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|242398821|ref|YP_002994245.1| - 0.14 11.5 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|242398821|ref|YP_002994245.1| - 0.17 11.6 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Prok-RING_1 PF14446.6 gi|242398821|ref|YP_002994245.1| - 0.43 10.5 2.6 5.5 7.0 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-RRN7 PF11781.8 gi|242398821|ref|YP_002994245.1| - 1.6 8.5 5.2 0.71 9.6 0.7 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF2258 PF10015.9 gi|242398822|ref|YP_002994246.1| - 4.1e-20 71.7 0.2 4.1e-20 71.7 0.2 2.2 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) DUF4795 PF16043.5 gi|242398822|ref|YP_002994246.1| - 0.0022 17.6 8.9 0.0027 17.4 8.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) Laminin_II PF06009.12 gi|242398822|ref|YP_002994246.1| - 0.0022 18.0 4.6 0.046 13.7 3.2 2.1 2 0 0 2 2 2 1 Laminin Domain II SHE3 PF17078.5 gi|242398822|ref|YP_002994246.1| - 0.0026 17.5 7.1 0.0045 16.7 7.1 1.4 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 AAA_23 PF13476.6 gi|242398822|ref|YP_002994246.1| - 0.0035 17.9 5.7 0.0043 17.6 5.7 1.1 1 0 0 1 1 1 1 AAA domain V_ATPase_I PF01496.19 gi|242398822|ref|YP_002994246.1| - 0.0041 15.1 1.5 0.0047 14.9 1.5 1.0 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family NPV_P10 PF05531.12 gi|242398822|ref|YP_002994246.1| - 0.0073 16.8 0.9 0.0073 16.8 0.9 1.7 2 0 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|242398822|ref|YP_002994246.1| - 0.018 15.0 0.4 0.043 13.8 0.1 1.6 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus MCPsignal PF00015.21 gi|242398822|ref|YP_002994246.1| - 0.024 14.4 0.6 0.038 13.8 0.6 1.3 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain T3SSipB PF16535.5 gi|242398822|ref|YP_002994246.1| - 0.033 14.7 0.7 0.058 13.9 0.7 1.4 1 0 0 1 1 1 0 Type III cell invasion protein SipB UPF0147 PF03685.13 gi|242398822|ref|YP_002994246.1| - 0.045 13.8 1.3 0.16 12.0 0.1 2.2 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0147) Uds1 PF15456.6 gi|242398822|ref|YP_002994246.1| - 0.051 13.7 7.1 0.038 14.1 3.1 2.1 1 1 1 2 2 2 0 Up-regulated During Septation HisKA PF00512.25 gi|242398822|ref|YP_002994246.1| - 0.061 13.4 3.6 0.82 9.7 2.6 2.3 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain Acetyltransf_16 PF05301.11 gi|242398822|ref|YP_002994246.1| - 0.074 12.8 0.3 0.12 12.1 0.3 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 DUF1706 PF08020.11 gi|242398822|ref|YP_002994246.1| - 0.081 12.8 0.9 0.081 12.8 0.9 2.0 2 1 1 3 3 2 0 Protein of unknown function (DUF1706) DUF1664 PF07889.12 gi|242398822|ref|YP_002994246.1| - 0.22 11.6 4.8 0.21 11.6 3.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) COG5 PF10392.9 gi|242398822|ref|YP_002994246.1| - 0.25 11.5 5.0 0.43 10.8 5.0 1.3 1 0 0 1 1 1 0 Golgi transport complex subunit 5 ATG16 PF08614.11 gi|242398822|ref|YP_002994246.1| - 0.3 11.3 13.0 0.11 12.7 9.4 1.8 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) FliD_N PF02465.18 gi|242398822|ref|YP_002994246.1| - 0.31 11.8 2.4 0.31 11.8 0.9 1.7 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus DASH_Dam1 PF08653.10 gi|242398822|ref|YP_002994246.1| - 0.34 10.8 2.6 0.61 9.9 1.1 2.2 2 1 1 3 3 3 0 DASH complex subunit Dam1 Seryl_tRNA_N PF02403.22 gi|242398822|ref|YP_002994246.1| - 0.42 10.9 9.1 0.99 9.7 9.0 1.9 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.11 gi|242398822|ref|YP_002994246.1| - 0.49 10.7 2.7 0.37 11.1 1.0 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF16 PF01519.16 gi|242398822|ref|YP_002994246.1| - 0.88 10.1 9.2 0.32 11.5 5.6 1.8 1 1 1 2 2 2 0 Protein of unknown function DUF16 H-kinase_dim PF02895.14 gi|242398822|ref|YP_002994246.1| - 0.94 9.9 5.0 5.7 7.4 5.0 2.1 1 1 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain Spc24 PF08286.11 gi|242398822|ref|YP_002994246.1| - 5.1 7.4 10.9 13 6.1 7.6 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 NYN PF01936.18 gi|242398823|ref|YP_002994247.1| - 2.6e-20 73.4 0.0 3.2e-20 73.1 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.13 gi|242398823|ref|YP_002994247.1| - 0.047 13.4 0.9 0.95 9.2 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF460) NYN PF01936.18 gi|242398824|ref|YP_002994248.1| - 1.1e-18 68.1 0.0 1.4e-18 67.7 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF374 PF04028.13 gi|242398824|ref|YP_002994248.1| - 0.0031 17.0 0.0 0.046 13.3 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF374) MNHE PF01899.16 gi|242398825|ref|YP_002994249.1| - 9.9e-37 125.9 0.9 1.2e-36 125.7 0.9 1.1 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.13 gi|242398826|ref|YP_002994250.1| - 2.9e-14 53.2 4.6 2.9e-14 53.2 4.6 1.6 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF1240 PF06836.12 gi|242398826|ref|YP_002994250.1| - 0.11 13.1 1.0 0.13 12.8 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1240) PhaG_MnhG_YufB PF03334.14 gi|242398827|ref|YP_002994251.1| - 1.1e-22 80.1 7.4 1.2e-22 79.9 7.4 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter subunit TetR_C_11 PF16859.5 gi|242398827|ref|YP_002994251.1| - 0.038 14.3 0.0 0.049 14.0 0.0 1.1 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF4040 PF13244.6 gi|242398828|ref|YP_002994252.1| - 1.1e-11 44.7 5.6 1.2e-11 44.6 5.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) MnhB PF04039.13 gi|242398830|ref|YP_002994254.1| - 6.2e-27 94.4 14.7 7.4e-27 94.1 14.7 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF3290 PF11694.8 gi|242398830|ref|YP_002994254.1| - 0.071 13.1 0.2 0.11 12.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) Oxidored_q2 PF00420.24 gi|242398831|ref|YP_002994255.1| - 3.4e-18 65.2 4.4 3.7e-18 65.1 4.4 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4418 PF14387.6 gi|242398831|ref|YP_002994255.1| - 0.028 14.6 5.6 0.037 14.2 5.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) LtrA PF06772.11 gi|242398831|ref|YP_002994255.1| - 0.15 11.2 4.0 0.19 10.9 4.0 1.0 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) DUF2108 PF09881.9 gi|242398831|ref|YP_002994255.1| - 0.31 11.1 8.4 0.16 12.0 6.3 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2108) DUF4040 PF13244.6 gi|242398831|ref|YP_002994255.1| - 2 8.7 9.6 0.61 10.3 1.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4040) SLATT_6 PF18169.1 gi|242398831|ref|YP_002994255.1| - 7.7 6.1 6.9 1.2 8.7 3.3 1.4 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 6 Proton_antipo_M PF00361.20 gi|242398832|ref|YP_002994256.1| - 4.8e-46 157.3 25.9 4.8e-46 157.3 25.9 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|242398832|ref|YP_002994256.1| - 1.9e-07 30.7 3.2 1.9e-07 30.7 3.2 3.2 2 1 1 3 3 3 1 NADH dehydrogenase I, subunit N related protein ACT PF01842.25 gi|242398833|ref|YP_002994257.1| - 1.3e-12 47.3 0.4 1.9e-12 46.7 0.4 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|242398833|ref|YP_002994257.1| - 7.8e-07 29.6 0.3 1.4e-06 28.8 0.3 1.4 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|242398833|ref|YP_002994257.1| - 0.00081 19.3 0.1 0.002 18.1 0.1 1.6 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|242398833|ref|YP_002994257.1| - 0.0058 16.4 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 ACT domain Na_H_Exchanger PF00999.21 gi|242398834|ref|YP_002994258.1| - 7e-30 104.1 37.5 8.6e-30 103.8 37.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family PvlArgDC PF01862.16 gi|242398835|ref|YP_002994259.1| - 3.9e-39 134.1 0.1 4.5e-39 133.8 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AdoMet_dc PF02675.15 gi|242398836|ref|YP_002994260.1| - 1.4e-42 144.3 0.1 1.6e-42 144.1 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Spermine_synth PF01564.17 gi|242398837|ref|YP_002994261.1| - 7.7e-52 175.4 0.0 1e-51 175.0 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|242398837|ref|YP_002994261.1| - 3.4e-11 42.9 0.2 7.6e-11 41.7 0.2 1.7 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|242398837|ref|YP_002994261.1| - 0.0015 19.2 0.0 0.004 17.8 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|242398837|ref|YP_002994261.1| - 0.0096 15.8 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_12 PF08242.12 gi|242398837|ref|YP_002994261.1| - 0.047 14.4 0.0 0.14 12.9 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain TrmB PF01978.19 gi|242398838|ref|YP_002994262.1| - 6.2e-10 38.8 0.1 6.2e-10 38.8 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|242398838|ref|YP_002994262.1| - 4.6e-06 26.4 1.1 7.7e-06 25.7 1.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|242398838|ref|YP_002994262.1| - 5.2e-05 22.7 1.2 5.2e-05 22.7 1.2 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|242398838|ref|YP_002994262.1| - 0.00056 19.9 0.2 0.00056 19.9 0.2 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|242398838|ref|YP_002994262.1| - 0.00067 19.5 0.6 0.00095 19.1 0.6 1.3 1 0 0 1 1 1 1 HTH domain DUF4423 PF14394.6 gi|242398838|ref|YP_002994262.1| - 0.0022 17.7 0.5 0.004 16.9 0.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) DUF2250 PF10007.9 gi|242398838|ref|YP_002994262.1| - 0.0025 17.9 2.8 0.039 14.0 0.5 2.4 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HxlR PF01638.17 gi|242398838|ref|YP_002994262.1| - 0.0025 17.6 0.6 0.0033 17.2 0.6 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Replic_Relax PF13814.6 gi|242398838|ref|YP_002994262.1| - 0.0032 17.5 0.1 0.0092 16.1 0.1 1.6 1 1 1 2 2 2 1 Replication-relaxation MarR PF01047.22 gi|242398838|ref|YP_002994262.1| - 0.0035 17.2 0.4 0.015 15.2 0.3 2.0 1 1 1 2 2 2 1 MarR family HTH_29 PF13551.6 gi|242398838|ref|YP_002994262.1| - 0.0037 17.2 0.0 0.0067 16.4 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn helix HTH_Mga PF08280.11 gi|242398838|ref|YP_002994262.1| - 0.0041 17.1 3.2 0.013 15.5 2.3 2.2 1 1 1 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain TFIIE_alpha PF02002.17 gi|242398838|ref|YP_002994262.1| - 0.0054 16.6 3.1 0.0072 16.2 3.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_40 PF14493.6 gi|242398838|ref|YP_002994262.1| - 0.0057 17.1 0.2 0.0094 16.4 0.2 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Dimerisation2 PF16864.5 gi|242398838|ref|YP_002994262.1| - 0.007 16.3 0.1 0.017 15.1 0.0 1.6 2 0 0 2 2 2 1 Dimerisation domain FaeA PF04703.12 gi|242398838|ref|YP_002994262.1| - 0.014 15.7 0.0 0.019 15.4 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_9 PF08221.11 gi|242398838|ref|YP_002994262.1| - 0.023 14.8 0.2 0.05 13.7 0.2 1.6 1 1 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_38 PF13936.6 gi|242398838|ref|YP_002994262.1| - 0.028 14.2 0.3 0.15 11.8 0.1 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|242398838|ref|YP_002994262.1| - 0.032 14.1 0.0 0.058 13.3 0.0 1.5 2 0 0 2 2 1 0 MarR family LexA_DNA_bind PF01726.16 gi|242398838|ref|YP_002994262.1| - 0.038 13.8 0.2 0.091 12.5 0.2 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HTH_23 PF13384.6 gi|242398838|ref|YP_002994262.1| - 0.042 13.7 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain GntR PF00392.21 gi|242398838|ref|YP_002994262.1| - 0.068 12.8 0.3 0.11 12.2 0.3 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RepL PF05732.11 gi|242398838|ref|YP_002994262.1| - 0.071 12.5 0.0 0.071 12.5 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_AsnC-type PF13404.6 gi|242398838|ref|YP_002994262.1| - 0.093 12.6 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|242398838|ref|YP_002994262.1| - 0.097 12.5 0.1 0.23 11.3 0.1 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain RP-C PF03428.13 gi|242398838|ref|YP_002994262.1| - 0.099 12.3 0.1 0.19 11.3 0.1 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain Rrf2 PF02082.20 gi|242398838|ref|YP_002994262.1| - 0.11 12.9 0.1 0.19 12.1 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator GST_C PF00043.25 gi|242398838|ref|YP_002994262.1| - 0.15 12.3 0.6 0.22 11.7 0.1 1.5 2 0 0 2 2 1 0 Glutathione S-transferase, C-terminal domain DALR_2 PF09190.11 gi|242398838|ref|YP_002994262.1| - 0.15 12.5 0.4 0.36 11.4 0.1 1.8 2 1 0 2 2 1 0 DALR domain HTH_36 PF13730.6 gi|242398838|ref|YP_002994262.1| - 0.23 11.4 3.2 0.65 10.0 0.1 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain UbiA PF01040.18 gi|242398839|ref|YP_002994263.1| - 1.5e-34 119.4 6.7 1.8e-34 119.2 6.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family LPG_synthase_TM PF03706.13 gi|242398840|ref|YP_002994264.1| - 2.7e-22 79.7 29.1 3.7e-22 79.2 29.1 1.2 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_1 PF00534.20 gi|242398841|ref|YP_002994265.1| - 9.4e-46 155.5 0.1 2.4e-45 154.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|242398841|ref|YP_002994265.1| - 1.7e-36 125.6 0.6 3.4e-36 124.6 0.6 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|242398841|ref|YP_002994265.1| - 5.2e-27 94.9 0.1 2.6e-26 92.6 0.1 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|242398841|ref|YP_002994265.1| - 4.2e-12 46.3 0.0 9.3e-11 42.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|242398841|ref|YP_002994265.1| - 1e-10 42.3 0.0 1e-09 39.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|242398841|ref|YP_002994265.1| - 2e-07 31.0 0.8 0.00058 19.6 0.0 2.2 1 1 0 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|242398841|ref|YP_002994265.1| - 5.9e-07 29.6 0.1 1.1e-06 28.8 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_5 PF16994.5 gi|242398841|ref|YP_002994265.1| - 0.0025 17.4 0.0 0.0056 16.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl-transferase family 4 PIGA PF08288.12 gi|242398841|ref|YP_002994265.1| - 0.043 14.4 1.1 0.097 13.3 1.1 1.5 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) Creatininase PF02633.14 gi|242398842|ref|YP_002994266.1| - 8.1e-62 208.8 0.0 9.2e-62 208.6 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase HlyIII PF03006.20 gi|242398843|ref|YP_002994267.1| - 0.0066 16.2 0.2 0.009 15.8 0.2 1.1 1 0 0 1 1 1 1 Haemolysin-III related ABC_tran_CTD PF16326.5 gi|242398843|ref|YP_002994267.1| - 0.016 15.4 1.4 0.016 15.4 1.4 2.3 2 1 0 2 2 2 0 ABC transporter C-terminal domain Knl1_RWD_C PF18210.1 gi|242398843|ref|YP_002994267.1| - 0.022 15.2 0.1 0.047 14.2 0.1 1.5 1 0 0 1 1 1 0 Knl1 RWD C-terminal domain EMP24_GP25L PF01105.24 gi|242398843|ref|YP_002994267.1| - 0.22 11.4 0.3 0.36 10.7 0.3 1.3 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF3347 PF11827.8 gi|242398843|ref|YP_002994267.1| - 0.31 11.2 0.8 0.46 10.6 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) XhlA PF10779.9 gi|242398843|ref|YP_002994267.1| - 0.71 10.1 3.5 0.34 11.1 0.5 2.1 2 0 0 2 2 2 0 Haemolysin XhlA DUF1192 PF06698.11 gi|242398843|ref|YP_002994267.1| - 1.7 8.8 8.6 0.55 10.3 5.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Mrpl_C PF18502.1 gi|242398844|ref|YP_002994268.1| - 0.024 14.9 0.1 0.066 13.5 0.1 1.7 1 0 0 1 1 1 0 54S ribosomal protein L8 C-terminal domain Interferon PF00143.19 gi|242398844|ref|YP_002994268.1| - 0.21 11.8 1.0 0.43 10.8 0.3 1.8 2 1 1 3 3 3 0 Interferon alpha/beta domain zf-C2H2 PF00096.26 gi|242398845|ref|YP_002994269.1| - 1.6e-06 28.2 1.8 2.4e-06 27.7 1.8 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|242398845|ref|YP_002994269.1| - 2.6e-05 24.7 1.3 3.8e-05 24.2 1.3 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger DUF629 PF04780.12 gi|242398845|ref|YP_002994269.1| - 0.00058 18.5 0.1 0.00058 18.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF629) GcpE PF04551.14 gi|242398845|ref|YP_002994269.1| - 0.0025 17.0 0.0 0.0025 17.0 0.0 1.0 1 0 0 1 1 1 1 GcpE protein zf-FPG_IleRS PF06827.14 gi|242398845|ref|YP_002994269.1| - 0.0057 16.5 0.3 0.0091 15.8 0.3 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-C2H2_jaz PF12171.8 gi|242398845|ref|YP_002994269.1| - 0.012 15.9 0.1 0.018 15.3 0.1 1.3 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding Mu-like_Com PF10122.9 gi|242398845|ref|YP_002994269.1| - 0.018 14.5 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Mu-like prophage protein Com CxC7 PF18866.1 gi|242398845|ref|YP_002994269.1| - 0.025 14.7 0.1 0.025 14.7 0.1 1.1 1 0 0 1 1 1 0 CxC7 like cysteine cluster associated with KDZ transposases zf-RING_7 PF02591.15 gi|242398845|ref|YP_002994269.1| - 0.027 14.6 0.0 0.038 14.2 0.0 1.3 1 0 0 1 1 1 0 C4-type zinc ribbon domain FOXP-CC PF16159.5 gi|242398845|ref|YP_002994269.1| - 0.033 14.8 0.1 0.037 14.6 0.1 1.2 1 0 0 1 1 1 0 FOXP coiled-coil domain zinc_ribbon_4 PF13717.6 gi|242398845|ref|YP_002994269.1| - 0.041 13.8 0.3 0.056 13.4 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|242398845|ref|YP_002994269.1| - 0.046 13.8 0.0 0.051 13.7 0.0 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_2 PF12756.7 gi|242398845|ref|YP_002994269.1| - 0.047 14.0 0.1 0.049 14.0 0.1 1.0 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) zf-Di19 PF05605.12 gi|242398845|ref|YP_002994269.1| - 0.05 13.9 0.2 0.062 13.6 0.2 1.1 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf_UBZ PF18439.1 gi|242398845|ref|YP_002994269.1| - 0.074 12.7 0.1 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger CW_binding_2 PF04122.12 gi|242398846|ref|YP_002994270.1| - 7.5e-09 36.1 0.1 0.0013 19.3 0.1 2.4 2 0 0 2 2 2 2 Putative cell wall binding repeat 2 HTH_Crp_2 PF13545.6 gi|242398846|ref|YP_002994270.1| - 1.6e-06 28.0 0.0 3.5e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|242398846|ref|YP_002994270.1| - 4.5e-06 26.5 0.0 8e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|242398846|ref|YP_002994270.1| - 7.1e-06 25.9 0.0 1.5e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|242398846|ref|YP_002994270.1| - 4.7e-05 23.2 0.3 9.7e-05 22.2 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|242398846|ref|YP_002994270.1| - 0.00019 20.9 0.1 0.00038 20.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|242398846|ref|YP_002994270.1| - 0.00026 20.7 0.0 0.00044 20.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|242398846|ref|YP_002994270.1| - 0.00051 20.4 0.4 0.0012 19.2 0.4 1.6 1 0 0 1 1 1 1 Penicillinase repressor HTH_36 PF13730.6 gi|242398846|ref|YP_002994270.1| - 0.00099 19.0 0.0 0.0023 17.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|242398846|ref|YP_002994270.1| - 0.0031 17.7 1.1 0.026 14.7 0.1 2.6 3 0 0 3 3 2 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|242398846|ref|YP_002994270.1| - 0.008 15.8 0.1 0.016 14.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Peptidase_U4 PF03419.13 gi|242398846|ref|YP_002994270.1| - 0.0096 15.2 0.0 0.044 13.1 0.0 1.8 2 0 0 2 2 2 1 Sporulation factor SpoIIGA HTH_DeoR PF08220.12 gi|242398846|ref|YP_002994270.1| - 0.01 15.6 0.0 0.025 14.3 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF1670 PF07900.11 gi|242398846|ref|YP_002994270.1| - 0.015 14.6 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) TFIIE_alpha PF02002.17 gi|242398846|ref|YP_002994270.1| - 0.031 14.1 0.3 0.082 12.8 0.1 1.7 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_27 PF13463.6 gi|242398846|ref|YP_002994270.1| - 0.12 12.9 0.1 0.25 11.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|242398846|ref|YP_002994270.1| - 0.15 11.9 0.0 0.5 10.2 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain OPT PF03169.15 gi|242398846|ref|YP_002994270.1| - 0.58 8.7 0.0 0.58 8.7 0.0 2.7 3 0 0 3 3 3 0 OPT oligopeptide transporter protein Lactamase_B_3 PF13483.6 gi|242398847|ref|YP_002994271.1| - 1.2e-36 126.1 0.0 1.5e-36 125.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|242398847|ref|YP_002994271.1| - 7.5e-24 84.4 0.0 9.5e-24 84.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|242398847|ref|YP_002994271.1| - 2e-13 50.8 0.6 3.7e-13 49.9 0.6 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|242398847|ref|YP_002994271.1| - 0.093 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain AAA PF00004.29 gi|242398848|ref|YP_002994272.1| - 7.5e-43 146.1 0.0 1.5e-42 145.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|242398848|ref|YP_002994272.1| - 2.1e-15 56.2 0.2 4.7e-15 55.1 0.2 1.6 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|242398848|ref|YP_002994272.1| - 1.6e-11 43.9 0.0 4e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_5 PF07728.14 gi|242398848|ref|YP_002994272.1| - 2.3e-07 30.9 0.1 3.6e-06 27.0 0.1 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|242398848|ref|YP_002994272.1| - 2.4e-07 31.3 0.2 0.00028 21.3 0.0 3.1 2 1 1 3 3 3 1 AAA ATPase domain Prot_ATP_OB_N PF17758.1 gi|242398848|ref|YP_002994272.1| - 1.1e-06 28.1 0.0 3e-06 26.8 0.0 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain RuvB_N PF05496.12 gi|242398848|ref|YP_002994272.1| - 1.3e-06 28.3 0.0 3.2e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|242398848|ref|YP_002994272.1| - 1.7e-06 28.3 0.0 8.6e-06 26.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|242398848|ref|YP_002994272.1| - 0.00017 21.9 0.1 0.019 15.3 0.0 2.6 1 1 1 2 2 2 1 AAA domain DUF815 PF05673.13 gi|242398848|ref|YP_002994272.1| - 0.00025 20.3 0.0 0.00052 19.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|242398848|ref|YP_002994272.1| - 0.00035 20.8 1.1 0.00084 19.6 0.0 2.2 3 0 0 3 3 2 1 AAA domain RNA_helicase PF00910.22 gi|242398848|ref|YP_002994272.1| - 0.00073 19.9 0.0 0.0014 19.0 0.0 1.5 1 0 0 1 1 1 1 RNA helicase ATPase PF06745.13 gi|242398848|ref|YP_002994272.1| - 0.0013 18.2 0.0 0.077 12.3 0.0 2.6 3 0 0 3 3 3 1 KaiC AAA_14 PF13173.6 gi|242398848|ref|YP_002994272.1| - 0.0026 17.8 0.0 0.0054 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|242398848|ref|YP_002994272.1| - 0.0044 16.8 0.0 0.0087 15.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein NRBF2 PF08961.10 gi|242398848|ref|YP_002994272.1| - 0.0044 16.7 0.3 0.0079 15.8 0.3 1.4 1 0 0 1 1 1 1 Nuclear receptor-binding factor 2, autophagy regulator AAA_18 PF13238.6 gi|242398848|ref|YP_002994272.1| - 0.0044 17.6 0.0 0.01 16.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|242398848|ref|YP_002994272.1| - 0.0052 16.0 0.0 0.0092 15.2 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|242398848|ref|YP_002994272.1| - 0.0059 16.0 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|242398848|ref|YP_002994272.1| - 0.0061 16.4 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|242398848|ref|YP_002994272.1| - 0.0088 16.5 0.1 0.023 15.1 0.0 1.8 2 0 0 2 2 1 1 AAA domain ATPase_2 PF01637.18 gi|242398848|ref|YP_002994272.1| - 0.011 15.7 0.4 0.4 10.6 0.0 2.7 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea CENP-F_leu_zip PF10473.9 gi|242398848|ref|YP_002994272.1| - 0.016 15.3 0.6 0.04 14.0 0.6 1.6 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_25 PF13481.6 gi|242398848|ref|YP_002994272.1| - 0.02 14.4 0.5 0.11 12.1 0.0 2.3 3 0 0 3 3 3 0 AAA domain Rad17 PF03215.15 gi|242398848|ref|YP_002994272.1| - 0.026 14.5 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|242398848|ref|YP_002994272.1| - 0.034 14.3 0.0 0.088 13.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|242398848|ref|YP_002994272.1| - 0.035 13.2 0.0 0.061 12.4 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 gi|242398848|ref|YP_002994272.1| - 0.051 14.1 0.0 0.19 12.3 0.0 1.9 2 0 0 2 2 1 0 ABC transporter Zeta_toxin PF06414.12 gi|242398848|ref|YP_002994272.1| - 0.058 12.7 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|242398848|ref|YP_002994272.1| - 0.058 13.1 0.0 0.13 12.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|242398848|ref|YP_002994272.1| - 0.06 13.3 0.0 0.22 11.4 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Sigma54_activ_2 PF14532.6 gi|242398848|ref|YP_002994272.1| - 0.061 13.5 0.0 0.23 11.6 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain BAG PF02179.16 gi|242398848|ref|YP_002994272.1| - 0.066 13.6 0.8 0.28 11.6 0.0 2.4 2 0 0 2 2 2 0 BAG domain AAA_7 PF12775.7 gi|242398848|ref|YP_002994272.1| - 0.079 12.5 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Not3 PF04065.15 gi|242398848|ref|YP_002994272.1| - 0.09 12.2 0.1 0.15 11.4 0.1 1.3 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component TsaE PF02367.17 gi|242398848|ref|YP_002994272.1| - 0.094 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TSNAXIP1_N PF15739.5 gi|242398848|ref|YP_002994272.1| - 0.11 12.8 1.2 0.31 11.4 1.2 1.6 1 0 0 1 1 1 0 Translin-associated factor X-interacting N-terminus KAP_NTPase PF07693.14 gi|242398848|ref|YP_002994272.1| - 0.12 11.6 0.0 2.2 7.4 0.0 2.2 1 1 0 2 2 2 0 KAP family P-loop domain LURAP PF14854.6 gi|242398848|ref|YP_002994272.1| - 0.41 10.6 1.4 0.78 9.7 0.3 2.1 2 0 0 2 2 1 0 Leucine rich adaptor protein APG6_N PF17675.1 gi|242398848|ref|YP_002994272.1| - 0.57 10.7 4.7 0.15 12.6 0.9 2.0 2 0 0 2 2 1 0 Apg6 coiled-coil region Prefoldin_2 PF01920.20 gi|242398848|ref|YP_002994272.1| - 1 9.4 5.2 0.44 10.5 1.4 2.4 3 0 0 3 3 2 0 Prefoldin subunit HALZ PF02183.18 gi|242398848|ref|YP_002994272.1| - 1.2 9.4 9.1 0.19 12.0 2.4 2.7 3 0 0 3 3 2 0 Homeobox associated leucine zipper CBS PF00571.28 gi|242398850|ref|YP_002994274.1| - 5.1e-19 68.5 0.2 1.6e-09 38.1 0.0 2.3 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|242398850|ref|YP_002994274.1| - 6.4e-15 55.0 0.4 1.8e-14 53.5 0.3 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|242398850|ref|YP_002994274.1| - 1.1e-12 47.7 0.5 2.3e-12 46.7 0.3 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|242398850|ref|YP_002994274.1| - 2.4e-12 47.0 0.0 3.6e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|242398850|ref|YP_002994274.1| - 4.7e-05 23.3 0.1 0.0002 21.2 0.1 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|242398850|ref|YP_002994274.1| - 0.00011 22.5 0.0 0.00024 21.4 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MqsA_antitoxin PF15731.5 gi|242398850|ref|YP_002994274.1| - 0.00024 21.2 0.0 0.00057 20.0 0.0 1.5 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_25 PF13413.6 gi|242398850|ref|YP_002994274.1| - 0.00073 19.3 0.1 0.0013 18.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|242398850|ref|YP_002994274.1| - 0.017 15.1 0.0 0.42 10.6 0.0 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|242398850|ref|YP_002994274.1| - 0.083 12.9 0.1 9.6 6.3 0.0 2.4 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus FliG_N PF14842.6 gi|242398851|ref|YP_002994275.1| - 0.17 12.5 0.2 0.64 10.6 0.0 2.0 3 0 0 3 3 3 0 FliG N-terminal domain Arm_3 PF16186.5 gi|242398851|ref|YP_002994275.1| - 1.3 8.7 9.8 0.85 9.2 0.2 2.9 3 0 0 3 3 3 0 Atypical Arm repeat Radical_SAM PF04055.21 gi|242398853|ref|YP_002994277.1| - 5e-15 56.3 0.0 6.4e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|242398853|ref|YP_002994277.1| - 1.9e-09 37.7 0.0 4.7e-09 36.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|242398853|ref|YP_002994277.1| - 3.9e-09 36.9 0.0 6.2e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Helicase_RecD PF05127.14 gi|242398855|ref|YP_002994279.1| - 2.6e-54 183.8 0.0 4.7e-54 182.9 0.0 1.5 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|242398855|ref|YP_002994279.1| - 9.1e-49 165.9 0.0 2.2e-34 118.8 0.0 2.4 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|242398855|ref|YP_002994279.1| - 2.8e-34 116.9 0.0 1.3e-33 114.8 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|242398855|ref|YP_002994279.1| - 0.00018 21.3 0.0 0.00082 19.1 0.1 2.1 2 1 0 2 2 2 1 Possible tRNA binding domain DUF92 PF01940.16 gi|242398855|ref|YP_002994279.1| - 0.04 13.3 0.0 0.064 12.7 0.0 1.2 1 0 0 1 1 1 0 Integral membrane protein DUF92 AAA_22 PF13401.6 gi|242398855|ref|YP_002994279.1| - 0.15 12.4 0.0 6.4 7.0 0.0 3.1 2 1 1 3 3 3 0 AAA domain DUF1931 PF09123.11 gi|242398856|ref|YP_002994280.1| - 5.6e-41 139.9 1.0 6.3e-41 139.7 1.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) MvaI_BcnI PF15515.6 gi|242398856|ref|YP_002994280.1| - 0.02 14.7 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 MvaI/BcnI restriction endonuclease family CBFD_NFYB_HMF PF00808.23 gi|242398856|ref|YP_002994280.1| - 0.059 13.7 0.4 0.46 10.8 0.2 2.2 2 0 0 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone OST3_OST6 PF04756.13 gi|242398856|ref|YP_002994280.1| - 0.13 11.6 0.0 0.3 10.4 0.0 1.5 1 1 1 2 2 2 0 OST3 / OST6 family, transporter family PEPcase_2 PF14010.6 gi|242398857|ref|YP_002994281.1| - 1.7e-178 594.2 2.9 1.9e-178 594.0 2.9 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase HpcH_HpaI PF03328.14 gi|242398857|ref|YP_002994281.1| - 0.029 13.5 0.0 0.052 12.7 0.0 1.3 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family DUF2139 PF09910.9 gi|242398858|ref|YP_002994282.1| - 1.3e-156 521.1 0.1 1.5e-156 520.8 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) DUF3213 PF11491.8 gi|242398859|ref|YP_002994283.1| - 8.8e-31 105.9 0.4 9.9e-31 105.8 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3213) Radical_SAM PF04055.21 gi|242398860|ref|YP_002994284.1| - 1.8e-23 83.7 0.0 1.8e-23 83.7 0.0 2.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|242398860|ref|YP_002994284.1| - 5.5e-07 29.9 0.2 1.9e-06 28.2 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|242398860|ref|YP_002994284.1| - 1.4e-05 25.2 1.1 3e-05 24.1 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain PBS_linker_poly PF00427.21 gi|242398860|ref|YP_002994284.1| - 0.077 13.0 0.1 0.54 10.3 0.1 2.3 2 0 0 2 2 2 0 Phycobilisome Linker polypeptide Fis1_TPR_C PF14853.6 gi|242398862|ref|YP_002994286.1| - 0.035 14.2 0.2 1.2 9.2 0.1 2.4 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat TINF2_N PF14973.6 gi|242398862|ref|YP_002994286.1| - 0.069 13.5 0.5 0.15 12.4 0.5 1.8 1 1 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus MecA_N PF05223.11 gi|242398862|ref|YP_002994286.1| - 0.071 13.4 0.1 14 6.0 0.0 2.5 2 1 0 2 2 2 0 NTF2-like N-terminal transpeptidase domain UDG PF03167.19 gi|242398863|ref|YP_002994287.1| - 1.1e-44 152.2 0.0 1.3e-44 151.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Na_H_antiporter PF03553.14 gi|242398864|ref|YP_002994288.1| - 6.6e-71 239.0 28.9 6.6e-71 239.0 28.9 2.1 2 0 0 2 2 2 1 Na+/H+ antiporter family DcuC PF03606.15 gi|242398864|ref|YP_002994288.1| - 1.6e-06 26.9 22.2 4.5e-06 25.4 10.7 2.8 3 0 0 3 3 3 2 C4-dicarboxylate anaerobic carrier Sacchrp_dh_C PF16653.5 gi|242398865|ref|YP_002994289.1| - 1.5e-27 97.4 0.0 2.1e-27 96.9 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|242398865|ref|YP_002994289.1| - 3.1e-15 56.6 0.0 4.5e-15 56.1 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|242398865|ref|YP_002994289.1| - 2.6e-05 24.3 0.0 4.3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|242398865|ref|YP_002994289.1| - 0.00013 22.2 0.0 0.00024 21.3 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.17 gi|242398865|ref|YP_002994289.1| - 0.0011 19.5 0.0 0.0019 18.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|242398865|ref|YP_002994289.1| - 0.011 15.3 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 gi|242398865|ref|YP_002994289.1| - 0.061 13.2 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding 3HCDH_N PF02737.18 gi|242398865|ref|YP_002994289.1| - 0.072 13.0 0.0 0.16 11.8 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amidinotransf PF02274.17 gi|242398866|ref|YP_002994290.1| - 6.8e-29 101.0 0.0 6.5e-27 94.5 0.0 2.3 1 1 0 1 1 1 1 Amidinotransferase UPF0180 PF03698.13 gi|242398866|ref|YP_002994290.1| - 0.0056 16.8 0.2 0.52 10.5 0.0 2.9 3 0 0 3 3 3 1 Uncharacterised protein family (UPF0180) PAD_porph PF04371.15 gi|242398866|ref|YP_002994290.1| - 0.093 12.0 0.0 0.57 9.4 0.0 1.9 1 1 1 2 2 2 0 Porphyromonas-type peptidyl-arginine deiminase RcsC PF09456.10 gi|242398866|ref|YP_002994290.1| - 0.2 11.6 0.0 6.3 6.9 0.0 2.2 2 0 0 2 2 2 0 RcsC Alpha-Beta-Loop (ABL) GHMP_kinases_N PF00288.26 gi|242398867|ref|YP_002994291.1| - 1.7e-08 34.6 0.0 3.3e-08 33.6 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain Toxin_GhoT_OrtT PF10753.9 gi|242398868|ref|YP_002994292.1| - 0.05 13.8 0.6 0.05 13.8 0.6 1.8 2 0 0 2 2 2 0 Toxin GhoT_OrtT UCR_UQCRX_QCR9 PF05365.12 gi|242398868|ref|YP_002994292.1| - 6.7 6.7 6.6 21 5.2 0.1 2.5 2 1 1 3 3 3 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like DNA_ligase_A_M PF01068.21 gi|242398869|ref|YP_002994293.1| - 4.6e-65 219.1 0.4 7.5e-65 218.4 0.4 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|242398869|ref|YP_002994293.1| - 6.4e-40 137.3 0.2 1.2e-39 136.4 0.2 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|242398869|ref|YP_002994293.1| - 3.1e-23 82.2 0.0 1.3e-22 80.2 0.0 2.2 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|242398869|ref|YP_002994293.1| - 6.4e-07 29.8 0.4 1e-06 29.2 0.4 1.3 1 0 0 1 1 1 1 RNA ligase FeS_assembly_P PF01883.19 gi|242398869|ref|YP_002994293.1| - 0.044 14.0 0.5 0.16 12.1 0.0 2.2 3 0 0 3 3 3 0 Iron-sulfur cluster assembly protein DNA_ligase_OB_2 PF14743.6 gi|242398869|ref|YP_002994293.1| - 0.072 13.1 0.0 0.28 11.2 0.0 2.0 1 1 0 1 1 1 0 DNA ligase OB-like domain mRNA_cap_enzyme PF01331.19 gi|242398869|ref|YP_002994293.1| - 0.1 12.4 0.2 0.37 10.6 0.1 2.0 2 1 0 2 2 2 0 mRNA capping enzyme, catalytic domain Endonuc_Holl PF10107.9 gi|242398870|ref|YP_002994294.1| - 3.3e-64 215.6 4.8 3.9e-64 215.3 4.8 1.0 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase DUF4263 PF14082.6 gi|242398870|ref|YP_002994294.1| - 0.0042 17.4 0.0 0.008 16.4 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4263) Peptidase_S49_N PF08496.10 gi|242398870|ref|YP_002994294.1| - 0.0083 16.2 0.1 0.011 15.8 0.1 1.2 1 0 0 1 1 1 1 Peptidase family S49 N-terminal PIN PF01850.21 gi|242398871|ref|YP_002994295.1| - 3.4e-26 92.1 0.8 4.1e-26 91.9 0.8 1.1 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|242398871|ref|YP_002994295.1| - 0.012 16.1 0.4 0.034 14.6 0.3 1.7 1 1 0 1 1 1 0 PIN domain DUF4423 PF14394.6 gi|242398871|ref|YP_002994295.1| - 0.024 14.3 0.0 0.033 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PKcGMP_CC PF16808.5 gi|242398871|ref|YP_002994295.1| - 3.3 7.6 5.0 2.9 7.8 0.2 2.6 3 0 0 3 3 3 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF104 PF01954.16 gi|242398872|ref|YP_002994296.1| - 3e-16 59.6 7.8 3.7e-16 59.3 7.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF190 PF02641.15 gi|242398872|ref|YP_002994296.1| - 0.038 14.3 0.1 0.049 14.0 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized ACR, COG1993 Smoothelin PF12510.8 gi|242398872|ref|YP_002994296.1| - 0.08 13.0 1.1 0.08 13.0 1.1 1.9 1 1 1 2 2 2 0 Smoothelin cytoskeleton protein CENP-M PF11111.8 gi|242398872|ref|YP_002994296.1| - 0.08 12.1 0.3 0.093 11.9 0.3 1.1 1 0 0 1 1 1 0 Centromere protein M (CENP-M) TcpE PF12648.7 gi|242398873|ref|YP_002994297.1| - 0.064 13.8 0.8 2.6 8.6 0.1 3.0 3 1 0 3 3 3 0 TcpE family HAD_2 PF13419.6 gi|242398875|ref|YP_002994299.1| - 1.9e-22 80.2 0.0 2.7e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242398875|ref|YP_002994299.1| - 2.7e-15 57.2 0.1 3.8e-14 53.5 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|242398875|ref|YP_002994299.1| - 3.3e-10 39.9 0.0 6.5e-10 38.9 0.0 1.5 1 1 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|242398875|ref|YP_002994299.1| - 6.9e-08 33.1 0.0 8.8e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.14 gi|242398875|ref|YP_002994299.1| - 0.0016 18.1 1.6 0.061 12.9 1.6 2.3 1 1 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) DUF2229 PF09989.9 gi|242398875|ref|YP_002994299.1| - 0.094 12.3 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) PALP PF00291.25 gi|242398876|ref|YP_002994300.1| - 2.5e-83 279.9 0.0 2.8e-83 279.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Aminotran_1_2 PF00155.21 gi|242398877|ref|YP_002994301.1| - 6.9e-42 143.9 0.0 8.9e-42 143.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|242398877|ref|YP_002994301.1| - 1.2e-05 24.0 0.0 1.9e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|242398877|ref|YP_002994301.1| - 0.00017 20.7 0.0 0.00028 20.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_MocR PF12897.7 gi|242398877|ref|YP_002994301.1| - 0.00026 19.9 0.0 0.0031 16.4 0.0 2.0 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Alliinase_C PF04864.13 gi|242398877|ref|YP_002994301.1| - 0.00042 19.3 0.0 0.0006 18.8 0.0 1.2 1 0 0 1 1 1 1 Allinase DUF240 PF03086.14 gi|242398877|ref|YP_002994301.1| - 0.069 13.1 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF240) DUF5603 PF18231.1 gi|242398878|ref|YP_002994302.1| - 7.8e-49 164.4 3.3 1.6e-48 163.4 3.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5603) ParBc PF02195.18 gi|242398878|ref|YP_002994302.1| - 1.3e-09 38.2 0.0 3.1e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|242398878|ref|YP_002994302.1| - 8.3e-05 21.6 0.0 0.073 11.9 0.1 2.4 2 1 0 2 2 2 2 Protein of unknown function (DUF1015) Proteasome PF00227.26 gi|242398879|ref|YP_002994303.1| - 1.1e-51 175.0 1.1 1.5e-51 174.6 1.1 1.1 1 0 0 1 1 1 1 Proteasome subunit GNAT_like PF18407.1 gi|242398879|ref|YP_002994303.1| - 0.1 13.0 0.8 0.2 12.0 0.8 1.6 1 1 0 1 1 1 0 GCN5-related N-acetyltransferase like domain KH_7 PF17214.3 gi|242398880|ref|YP_002994304.1| - 9.3e-31 105.6 8.4 2.9e-28 97.6 2.6 2.9 2 0 0 2 2 2 2 KH domain Beta-Casp PF10996.8 gi|242398880|ref|YP_002994304.1| - 2e-25 89.2 0.0 4e-25 88.2 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|242398880|ref|YP_002994304.1| - 1.3e-20 73.1 0.2 5.2e-20 71.1 0.0 2.1 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|242398880|ref|YP_002994304.1| - 8.2e-09 35.2 0.0 1.5e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|242398880|ref|YP_002994304.1| - 1.3e-07 31.9 1.8 1.3e-06 28.6 1.8 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily KH_2 PF07650.17 gi|242398880|ref|YP_002994304.1| - 2.9e-06 27.0 9.7 0.00036 20.3 0.6 3.1 2 1 1 3 3 3 2 KH domain KH_1 PF00013.29 gi|242398880|ref|YP_002994304.1| - 0.00011 22.0 0.2 0.01 15.7 0.1 2.8 2 0 0 2 2 2 1 KH domain Lactamase_B_2 PF12706.7 gi|242398880|ref|YP_002994304.1| - 0.00035 20.1 0.0 0.00077 19.0 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|242398880|ref|YP_002994304.1| - 0.0012 18.7 0.6 0.0046 16.8 0.1 2.3 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|242398880|ref|YP_002994304.1| - 0.038 13.9 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Beta-lactamase superfamily domain RPEL PF02755.15 gi|242398880|ref|YP_002994304.1| - 0.082 12.6 0.9 0.2 11.4 0.0 2.2 2 0 0 2 2 2 0 RPEL repeat PALP PF00291.25 gi|242398881|ref|YP_002994305.1| - 1.1e-61 208.9 0.1 1.5e-61 208.4 0.1 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PadR PF03551.14 gi|242398881|ref|YP_002994305.1| - 2.3e-07 30.7 7.7 2.4e-06 27.4 4.6 2.5 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|242398881|ref|YP_002994305.1| - 0.00011 22.0 0.1 0.00021 21.1 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|242398881|ref|YP_002994305.1| - 0.0013 18.6 1.2 0.0052 16.7 0.4 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DUF505 PF04458.12 gi|242398881|ref|YP_002994305.1| - 0.0019 16.7 0.4 0.0029 16.0 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_27 PF13463.6 gi|242398881|ref|YP_002994305.1| - 0.0054 17.2 0.3 0.11 13.0 0.1 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain ACP_syn_III_C PF08541.10 gi|242398881|ref|YP_002994305.1| - 0.026 14.7 0.0 0.46 10.7 0.0 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Cdc6_C PF09079.11 gi|242398881|ref|YP_002994305.1| - 0.028 14.4 0.1 0.06 13.3 0.1 1.5 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain SMC_ScpB PF04079.16 gi|242398881|ref|YP_002994305.1| - 0.046 13.4 0.1 1.9 8.1 0.1 2.5 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB Replic_Relax PF13814.6 gi|242398881|ref|YP_002994305.1| - 0.067 13.2 0.2 0.12 12.5 0.2 1.3 1 0 0 1 1 1 0 Replication-relaxation HTH_5 PF01022.20 gi|242398881|ref|YP_002994305.1| - 0.088 12.7 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family IF-2B PF01008.17 gi|242398881|ref|YP_002994305.1| - 0.16 11.2 0.0 0.25 10.5 0.0 1.2 1 0 0 1 1 1 0 Initiation factor 2 subunit family HTH_20 PF12840.7 gi|242398881|ref|YP_002994305.1| - 0.18 11.9 0.1 0.97 9.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Rab5ip PF07019.12 gi|242398882|ref|YP_002994306.1| - 0.54 10.9 8.2 2.6 8.7 5.9 2.1 1 1 1 2 2 2 0 Rab5-interacting protein (Rab5ip) Rib_5-P_isom_A PF06026.14 gi|242398883|ref|YP_002994307.1| - 8.9e-66 220.8 0.2 1.1e-65 220.4 0.2 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|242398883|ref|YP_002994307.1| - 2.8e-06 27.4 0.0 0.0006 19.8 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|242398883|ref|YP_002994307.1| - 0.035 13.2 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain DUF553 PF04473.12 gi|242398884|ref|YP_002994308.1| - 2.9e-44 150.3 0.8 5e-44 149.5 0.8 1.4 1 0 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.19 gi|242398884|ref|YP_002994308.1| - 0.0078 16.6 0.0 0.23 11.9 0.0 2.3 1 1 0 1 1 1 1 Transglutaminase-like superfamily Glyco_hydro_25 PF01183.20 gi|242398884|ref|YP_002994308.1| - 0.062 13.5 0.2 0.13 12.5 0.2 1.4 1 0 0 1 1 1 0 Glycosyl hydrolases family 25 DctP PF03480.13 gi|242398885|ref|YP_002994309.1| - 1.3e-11 44.4 0.0 2.4e-11 43.5 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 DctP PF03480.13 gi|242398886|ref|YP_002994310.1| - 7.7e-29 100.9 0.1 9e-29 100.7 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 DUF3106 PF11304.8 gi|242398886|ref|YP_002994310.1| - 0.011 16.2 0.2 3.9 8.0 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3106) Cnn_1N PF07989.11 gi|242398886|ref|YP_002994310.1| - 0.087 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 DctQ PF04290.12 gi|242398887|ref|YP_002994311.1| - 1.4e-21 76.8 7.4 1.6e-21 76.6 7.4 1.1 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component DctM PF06808.12 gi|242398888|ref|YP_002994312.1| - 5.7e-82 275.8 48.2 6.7e-82 275.5 48.2 1.0 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component RPA_interact_C PF14768.6 gi|242398889|ref|YP_002994313.1| - 0.013 16.0 0.3 0.021 15.4 0.3 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zf-RING_7 PF02591.15 gi|242398889|ref|YP_002994313.1| - 0.02 15.1 0.0 4.8 7.4 0.0 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|242398889|ref|YP_002994313.1| - 0.065 12.7 1.9 0.73 9.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRPl_C4 PF17026.5 gi|242398889|ref|YP_002994313.1| - 0.072 13.2 0.3 0.19 11.8 0.3 1.7 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type SAP PF02037.27 gi|242398889|ref|YP_002994313.1| - 0.074 12.8 0.2 0.13 12.0 0.2 1.4 1 0 0 1 1 1 0 SAP domain FYVE PF01363.21 gi|242398889|ref|YP_002994313.1| - 0.1 12.7 1.6 0.16 12.1 1.6 1.2 1 0 0 1 1 1 0 FYVE zinc finger OrfB_Zn_ribbon PF07282.11 gi|242398889|ref|YP_002994313.1| - 0.15 12.0 1.5 0.25 11.3 1.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RecR PF02132.15 gi|242398889|ref|YP_002994313.1| - 0.28 10.8 0.8 28 4.4 0.2 2.5 2 0 0 2 2 2 0 RecR protein Aldolase_II PF00596.21 gi|242398890|ref|YP_002994314.1| - 3.3e-43 147.8 0.0 3.7e-43 147.6 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain UPF0147 PF03685.13 gi|242398891|ref|YP_002994315.1| - 5.9e-32 109.6 3.5 6.8e-32 109.4 3.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) NTP_transf_7 PF07984.12 gi|242398891|ref|YP_002994315.1| - 0.1 11.8 0.3 0.11 11.7 0.3 1.0 1 0 0 1 1 1 0 Nucleotidyltransferase CobA_CobO_BtuR PF02572.15 gi|242398892|ref|YP_002994316.1| - 5.3e-61 205.8 0.0 6e-61 205.7 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IstB_IS21 PF01695.17 gi|242398892|ref|YP_002994316.1| - 0.086 12.6 0.1 7.7 6.2 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|242398892|ref|YP_002994316.1| - 0.096 12.2 1.1 0.84 9.2 1.1 2.0 1 1 0 1 1 1 0 AAA domain PC_rep PF01851.22 gi|242398892|ref|YP_002994316.1| - 0.16 12.5 0.7 1.1 9.8 0.1 2.6 2 1 0 2 2 2 0 Proteasome/cyclosome repeat Peptidase_S58 PF03576.14 gi|242398893|ref|YP_002994317.1| - 8.6e-117 389.9 0.9 9.8e-117 389.7 0.9 1.0 1 0 0 1 1 1 1 Peptidase family S58 Aminotran_5 PF00266.19 gi|242398894|ref|YP_002994318.1| - 4.8e-29 101.5 0.0 7.4e-29 100.8 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|242398894|ref|YP_002994318.1| - 0.00059 18.5 0.0 0.00082 18.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|242398894|ref|YP_002994318.1| - 0.0024 17.3 0.0 0.0033 16.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_3 PF00202.21 gi|242398894|ref|YP_002994318.1| - 0.062 12.0 0.0 1.7 7.2 0.0 2.1 2 0 0 2 2 2 0 Aminotransferase class-III AP_endonuc_2 PF01261.24 gi|242398895|ref|YP_002994319.1| - 3.6e-21 75.6 0.0 4.8e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Amidohydro_1 PF01979.20 gi|242398895|ref|YP_002994319.1| - 0.00028 20.3 0.2 0.0014 18.1 0.2 2.0 1 1 0 1 1 1 1 Amidohydrolase family DUF5446 PF17522.2 gi|242398895|ref|YP_002994319.1| - 0.27 11.4 1.8 0.86 9.8 0.0 2.6 3 0 0 3 3 3 0 Family of unknown function (DUF5446) Spc7 PF08317.11 gi|242398896|ref|YP_002994320.1| - 0.00097 18.1 15.8 0.00097 18.1 15.8 3.1 2 1 1 3 3 3 2 Spc7 kinetochore protein Atg14 PF10186.9 gi|242398896|ref|YP_002994320.1| - 0.001 18.3 17.1 0.001 18.3 17.1 3.0 2 1 1 3 3 3 1 Vacuolar sorting 38 and autophagy-related subunit 14 DUF948 PF06103.11 gi|242398896|ref|YP_002994320.1| - 0.019 15.2 13.0 0.08 13.2 0.9 4.5 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) MutS_II PF05188.17 gi|242398896|ref|YP_002994320.1| - 0.023 15.0 4.5 0.023 15.0 4.5 3.1 4 1 0 4 4 3 0 MutS domain II Bacillus_HBL PF05791.11 gi|242398896|ref|YP_002994320.1| - 0.054 13.3 27.8 0.087 12.7 7.2 3.8 2 2 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) FlaC_arch PF05377.11 gi|242398896|ref|YP_002994320.1| - 0.067 13.6 1.8 0.067 13.6 1.8 6.3 5 2 3 8 8 7 0 Flagella accessory protein C (FlaC) COG2 PF06148.11 gi|242398896|ref|YP_002994320.1| - 0.07 13.2 31.5 0.15 12.2 7.5 4.9 1 1 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 NPV_P10 PF05531.12 gi|242398896|ref|YP_002994320.1| - 0.15 12.6 20.4 9.6 6.8 4.0 5.6 2 2 4 6 6 6 0 Nucleopolyhedrovirus P10 protein EzrA PF06160.12 gi|242398896|ref|YP_002994320.1| - 0.94 7.6 55.0 0.18 10.0 16.3 3.1 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA AAA_13 PF13166.6 gi|242398896|ref|YP_002994320.1| - 1 7.9 41.2 0.12 11.0 13.1 2.1 1 1 1 2 2 2 0 AAA domain Laminin_I PF06008.14 gi|242398896|ref|YP_002994320.1| - 1.7 8.3 35.5 0.27 10.9 9.4 2.9 2 1 0 2 2 2 0 Laminin Domain I Baculo_PEP_C PF04513.12 gi|242398896|ref|YP_002994320.1| - 1.7 8.7 15.6 1.5 8.9 2.1 4.1 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus SPACA9 PF15120.6 gi|242398896|ref|YP_002994320.1| - 1.9 8.2 15.1 1.1 9.0 1.1 3.7 2 1 1 3 3 3 0 Sperm acrosome-associated protein 9 BLOC1_2 PF10046.9 gi|242398896|ref|YP_002994320.1| - 2.9 8.3 43.6 0.92 9.9 7.1 5.2 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PCRF PF03462.18 gi|242398896|ref|YP_002994320.1| - 2.9 7.7 40.6 0.2 11.5 10.8 3.5 2 1 2 4 4 4 0 PCRF domain MCPsignal PF00015.21 gi|242398896|ref|YP_002994320.1| - 3.6 7.4 13.6 12 5.7 1.4 3.5 3 1 0 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain OmpH PF03938.14 gi|242398896|ref|YP_002994320.1| - 7.1 7.0 52.0 12 6.3 15.9 4.2 2 1 1 3 3 3 0 Outer membrane protein (OmpH-like) Exonuc_VII_L PF02601.15 gi|242398896|ref|YP_002994320.1| - 7.4 6.0 38.4 1.8e+04 -9.4 38.4 3.0 1 1 0 1 1 0 0 Exonuclease VII, large subunit Fib_alpha PF08702.10 gi|242398896|ref|YP_002994320.1| - 8 6.6 43.8 3.2 7.9 9.0 5.0 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family DUF4407 PF14362.6 gi|242398896|ref|YP_002994320.1| - 8.6 5.6 18.4 1.9 7.7 4.6 2.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4407) DUF16 PF01519.16 gi|242398896|ref|YP_002994320.1| - 8.8 6.9 43.0 0.04 14.4 12.0 4.4 1 1 3 4 4 4 0 Protein of unknown function DUF16 DUF373 PF04123.13 gi|242398897|ref|YP_002994321.1| - 7.7e-98 328.0 10.0 9.2e-98 327.8 10.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Thiamine_BP PF01910.17 gi|242398898|ref|YP_002994322.1| - 3.4e-11 42.9 0.1 3.7e-11 42.8 0.1 1.0 1 0 0 1 1 1 1 Thiamine-binding protein LcrR PF09621.10 gi|242398898|ref|YP_002994322.1| - 0.05 13.1 0.0 0.057 12.9 0.0 1.0 1 0 0 1 1 1 0 Type III secretion system regulator (LcrR) AMMECR1 PF01871.17 gi|242398899|ref|YP_002994323.1| - 2.8e-52 176.7 0.0 3.2e-52 176.5 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Methyltr_RsmB-F PF01189.17 gi|242398901|ref|YP_002994325.1| - 1.8e-51 174.6 0.0 2.8e-51 174.0 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F NusB PF01029.18 gi|242398901|ref|YP_002994325.1| - 5.8e-17 62.2 0.3 1.5e-16 60.8 0.3 1.7 1 0 0 1 1 1 1 NusB family Methyltransf_31 PF13847.6 gi|242398901|ref|YP_002994325.1| - 1.2e-13 51.1 0.0 4.7e-13 49.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|242398901|ref|YP_002994325.1| - 1.2e-09 37.9 0.3 3.4e-08 33.1 0.1 2.2 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|242398901|ref|YP_002994325.1| - 3e-07 30.4 0.0 7.9e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|242398901|ref|YP_002994325.1| - 5.2e-07 30.3 0.0 5.6e-06 27.0 0.0 2.5 1 1 1 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|242398901|ref|YP_002994325.1| - 5.4e-06 26.1 0.1 0.00044 19.8 0.0 2.7 2 1 0 2 2 2 1 Methyltransferase small domain FtsJ PF01728.19 gi|242398901|ref|YP_002994325.1| - 0.0002 21.5 0.0 0.00041 20.5 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase Fibrillarin PF01269.17 gi|242398901|ref|YP_002994325.1| - 0.00081 18.6 0.2 0.002 17.3 0.0 1.7 2 0 0 2 2 2 1 Fibrillarin Methyltr_RsmF_N PF17125.5 gi|242398901|ref|YP_002994325.1| - 0.0014 19.1 0.0 0.0084 16.6 0.0 2.2 2 1 1 3 3 3 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_4 PF02390.17 gi|242398901|ref|YP_002994325.1| - 0.0043 16.5 0.1 0.01 15.3 0.1 1.7 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_15 PF09445.10 gi|242398901|ref|YP_002994325.1| - 0.049 13.2 0.0 0.12 11.9 0.0 1.8 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PI-TkoII_IV PF18714.1 gi|242398902|ref|YP_002994326.1| - 6.9e-81 269.0 4.1 6.9e-81 269.0 4.1 2.2 2 0 0 2 2 2 1 DNA polymerase II intein Domain IV DNA_pol_B PF00136.21 gi|242398902|ref|YP_002994326.1| - 1.9e-65 221.4 0.6 4.7e-28 98.1 0.1 3.4 3 0 0 3 3 3 3 DNA polymerase family B Intein_splicing PF14890.6 gi|242398902|ref|YP_002994326.1| - 2.5e-51 173.1 4.2 1.3e-32 112.5 0.3 2.8 2 0 0 2 2 2 2 Intein splicing domain DNA_pol_B_exo1 PF03104.19 gi|242398902|ref|YP_002994326.1| - 9.1e-48 163.1 4.0 2.4e-36 125.5 0.1 3.0 2 1 1 3 3 3 2 DNA polymerase family B, exonuclease domain LAGLIDADG_3 PF14528.6 gi|242398902|ref|YP_002994326.1| - 2.1e-10 40.8 0.3 0.0001 22.5 0.1 3.4 2 0 0 2 2 2 2 LAGLIDADG-like domain DNA_pol_B_exo2 PF10108.9 gi|242398902|ref|YP_002994326.1| - 9.7e-10 38.5 0.0 2.5e-09 37.2 0.0 1.6 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|242398902|ref|YP_002994326.1| - 1.5e-06 28.3 0.1 4.8e-06 26.7 0.1 2.0 1 0 0 1 1 1 1 RNase_H superfamily DUF2816 PF10992.8 gi|242398902|ref|YP_002994326.1| - 0.0072 16.2 0.7 0.066 13.1 0.1 2.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2816) DUF4455 PF14643.6 gi|242398902|ref|YP_002994326.1| - 0.023 13.4 0.0 0.044 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) AAA_17 PF13207.6 gi|242398903|ref|YP_002994327.1| - 1.9e-20 73.7 0.0 2.8e-20 73.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|242398903|ref|YP_002994327.1| - 9.9e-11 42.3 0.0 1.8e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|242398903|ref|YP_002994327.1| - 4e-07 30.3 0.0 4.6e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|242398903|ref|YP_002994327.1| - 0.00035 20.8 0.1 0.001 19.2 0.0 1.8 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|242398903|ref|YP_002994327.1| - 0.079 12.2 0.0 0.13 11.5 0.0 1.4 1 1 0 1 1 1 0 Zeta toxin DEAD PF00270.29 gi|242398904|ref|YP_002994328.1| - 4.8e-25 88.3 0.0 1.7e-24 86.5 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|242398904|ref|YP_002994328.1| - 3.5e-12 46.7 0.1 7.6e-10 39.1 0.0 3.3 2 1 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|242398904|ref|YP_002994328.1| - 7.7e-11 42.3 0.0 2.5e-10 40.6 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|242398904|ref|YP_002994328.1| - 3.2e-09 37.2 0.5 2.2e-08 34.6 0.2 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|242398904|ref|YP_002994328.1| - 1.3e-05 25.2 0.2 8.6e-05 22.6 0.0 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH PF00633.23 gi|242398904|ref|YP_002994328.1| - 0.00075 19.2 0.1 0.17 11.8 0.1 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|242398904|ref|YP_002994328.1| - 0.00097 18.9 0.0 0.0036 17.1 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|242398904|ref|YP_002994328.1| - 0.029 14.6 0.0 0.068 13.4 0.0 1.7 1 0 0 1 1 1 0 Pathogenicity locus DUF2027 PF09640.10 gi|242398905|ref|YP_002994329.1| - 0.11 12.1 0.4 0.17 11.5 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2027) oligo_HPY PF08352.12 gi|242398907|ref|YP_002994331.1| - 1.2e-21 76.9 0.1 2.8e-21 75.8 0.1 1.7 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region ABC_tran PF00005.27 gi|242398907|ref|YP_002994331.1| - 1.6e-10 41.6 0.0 2.4e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242398907|ref|YP_002994331.1| - 3.5e-06 27.0 0.0 4.2e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|242398907|ref|YP_002994331.1| - 0.031 12.9 0.1 0.21 10.2 0.0 1.9 1 1 1 2 2 2 0 AAA domain SMC_N PF02463.19 gi|242398907|ref|YP_002994331.1| - 0.032 13.7 0.0 0.041 13.3 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AsnC_trans_reg PF01037.21 gi|242398909|ref|YP_002994333.1| - 1.3e-12 47.5 0.3 1.4e-12 47.3 0.3 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|242398909|ref|YP_002994333.1| - 0.0015 18.5 0.5 0.0035 17.4 0.4 1.5 1 1 0 1 1 1 1 NapD protein SRP19 PF01922.17 gi|242398910|ref|YP_002994334.1| - 2.1e-12 47.8 0.2 2.4e-12 47.6 0.2 1.1 1 0 0 1 1 1 1 SRP19 protein DUF257 PF03192.13 gi|242398911|ref|YP_002994335.1| - 1.7e-07 31.3 0.9 6.9e-07 29.3 0.9 1.8 1 1 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 GCD14 PF08704.10 gi|242398912|ref|YP_002994336.1| - 1.6e-27 96.8 0.0 9.1e-26 91.0 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|242398912|ref|YP_002994336.1| - 1.5e-11 44.5 0.0 2e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|242398912|ref|YP_002994336.1| - 1.2e-10 41.4 0.0 1.6e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14_N PF14801.6 gi|242398912|ref|YP_002994336.1| - 9.4e-10 38.2 0.1 1.7e-09 37.4 0.1 1.4 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_25 PF13649.6 gi|242398912|ref|YP_002994336.1| - 8.1e-07 29.7 0.0 1.5e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|242398912|ref|YP_002994336.1| - 1.9e-05 25.2 0.0 4.1e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|242398912|ref|YP_002994336.1| - 0.00021 20.5 0.0 0.00031 19.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.6 gi|242398912|ref|YP_002994336.1| - 0.00093 20.2 0.0 0.0015 19.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|242398912|ref|YP_002994336.1| - 0.0013 18.1 0.0 0.0022 17.4 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|242398912|ref|YP_002994336.1| - 0.0013 18.4 0.0 0.22 11.2 0.0 2.1 1 1 1 2 2 2 2 16S rRNA methyltransferase RsmB/F Methyltransf_12 PF08242.12 gi|242398912|ref|YP_002994336.1| - 0.002 18.9 0.0 0.0054 17.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|242398912|ref|YP_002994336.1| - 0.0028 17.2 0.0 0.012 15.1 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_3 PF01596.17 gi|242398912|ref|YP_002994336.1| - 0.0059 15.8 0.0 0.0084 15.3 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.20 gi|242398912|ref|YP_002994336.1| - 0.0063 15.8 0.0 0.0084 15.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|242398912|ref|YP_002994336.1| - 0.011 15.2 0.0 0.26 10.7 0.0 2.2 1 1 0 1 1 1 0 Putative methyltransferase Methyltransf_18 PF12847.7 gi|242398912|ref|YP_002994336.1| - 0.034 14.1 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|242398912|ref|YP_002994336.1| - 0.036 13.9 0.0 0.27 11.0 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|242398912|ref|YP_002994336.1| - 0.11 12.2 0.0 1 9.0 0.0 2.2 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 PSK PF06404.12 gi|242398912|ref|YP_002994336.1| - 0.11 13.5 0.3 0.35 11.9 0.1 1.8 2 0 0 2 2 2 0 Phytosulfokine precursor protein (PSK) Methyltransf_25 PF13649.6 gi|242398913|ref|YP_002994337.1| - 7.7e-25 87.4 0.0 2.4e-24 85.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|242398913|ref|YP_002994337.1| - 1.6e-24 86.4 0.1 3.4e-24 85.3 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|242398913|ref|YP_002994337.1| - 3.8e-24 85.2 0.0 4.8e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|242398913|ref|YP_002994337.1| - 2.5e-17 63.0 0.0 3.9e-17 62.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|242398913|ref|YP_002994337.1| - 1.3e-13 51.1 0.0 2e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|242398913|ref|YP_002994337.1| - 1.4e-12 48.2 0.0 2.7e-12 47.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|242398913|ref|YP_002994337.1| - 5.4e-07 29.4 0.0 9.2e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UPF0020 PF01170.18 gi|242398913|ref|YP_002994337.1| - 1.7e-06 27.9 0.0 1.6e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.19 gi|242398913|ref|YP_002994337.1| - 9.5e-06 25.5 0.0 1.5e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.16 gi|242398913|ref|YP_002994337.1| - 1.8e-05 23.5 0.0 2.2e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|242398913|ref|YP_002994337.1| - 5.4e-05 22.8 0.0 8.7e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|242398913|ref|YP_002994337.1| - 7.5e-05 22.1 0.0 9.9e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 gi|242398913|ref|YP_002994337.1| - 0.00016 22.7 0.0 0.0023 18.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|242398913|ref|YP_002994337.1| - 0.00033 20.6 0.0 0.00054 19.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|242398913|ref|YP_002994337.1| - 0.0006 19.8 0.0 0.00083 19.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|242398913|ref|YP_002994337.1| - 0.00069 19.1 0.0 0.00093 18.7 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|242398913|ref|YP_002994337.1| - 0.00091 18.7 0.0 0.0012 18.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB ADH_zinc_N PF00107.26 gi|242398913|ref|YP_002994337.1| - 0.0086 16.1 0.0 0.022 14.7 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Methyltransf_15 PF09445.10 gi|242398913|ref|YP_002994337.1| - 0.024 14.2 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DOT1 PF08123.13 gi|242398913|ref|YP_002994337.1| - 0.028 13.9 0.1 0.049 13.2 0.1 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 DUF938 PF06080.12 gi|242398913|ref|YP_002994337.1| - 0.037 13.8 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_8 PF05148.15 gi|242398913|ref|YP_002994337.1| - 0.039 13.8 0.3 0.099 12.5 0.2 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_20 PF12147.8 gi|242398913|ref|YP_002994337.1| - 0.046 12.9 0.0 0.066 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase TPMT PF05724.11 gi|242398913|ref|YP_002994337.1| - 0.076 12.7 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_4 PF02390.17 gi|242398913|ref|YP_002994337.1| - 0.082 12.4 0.0 0.17 11.3 0.0 1.6 1 0 0 1 1 1 0 Putative methyltransferase CheR PF01739.18 gi|242398913|ref|YP_002994337.1| - 0.15 11.5 0.2 1.3 8.4 0.1 2.2 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain DUF3322 PF11795.8 gi|242398914|ref|YP_002994338.1| - 0.039 14.0 0.0 0.044 13.8 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) Glycos_trans_3N PF02885.17 gi|242398914|ref|YP_002994338.1| - 0.067 13.1 0.1 0.083 12.8 0.1 1.3 1 1 0 1 1 1 0 Glycosyl transferase family, helical bundle domain PmbA_TldD PF01523.16 gi|242398916|ref|YP_002994340.1| - 1.6e-48 166.0 0.5 1.9e-48 165.7 0.5 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|242398918|ref|YP_002994342.1| - 1.3e-60 205.6 0.2 2.5e-60 204.7 0.2 1.5 1 0 0 1 1 1 1 Putative modulator of DNA gyrase GDC-P PF02347.16 gi|242398919|ref|YP_002994343.1| - 2.1e-12 46.6 0.0 2.9e-09 36.3 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|242398919|ref|YP_002994343.1| - 1.4e-08 34.1 0.1 3e-08 33.0 0.1 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|242398919|ref|YP_002994343.1| - 0.00026 20.4 0.0 0.00041 19.7 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|242398919|ref|YP_002994343.1| - 0.0013 18.1 0.3 0.0036 16.7 0.0 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.19 gi|242398919|ref|YP_002994343.1| - 0.0036 16.1 0.0 1.9 7.1 0.0 2.1 2 0 0 2 2 2 2 Pyridoxal-dependent decarboxylase conserved domain Flavi_DEAD PF07652.14 gi|242398919|ref|YP_002994343.1| - 0.11 12.4 0.7 2.1 8.3 0.0 2.3 2 0 0 2 2 2 0 Flavivirus DEAD domain Cys_Met_Meta_PP PF01053.20 gi|242398919|ref|YP_002994343.1| - 0.14 10.6 0.0 0.24 9.9 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme GDC-P PF02347.16 gi|242398920|ref|YP_002994344.1| - 1.2e-121 406.5 0.0 1.4e-121 406.3 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|242398920|ref|YP_002994344.1| - 6.2e-05 22.1 0.0 0.0001 21.4 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|242398920|ref|YP_002994344.1| - 0.00083 18.0 0.0 0.0014 17.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme HAD_2 PF13419.6 gi|242398921|ref|YP_002994345.1| - 6e-10 39.5 0.0 1.1e-09 38.6 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|242398921|ref|YP_002994345.1| - 0.0022 18.4 0.1 0.0039 17.6 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242398921|ref|YP_002994345.1| - 0.0047 17.2 0.0 0.051 13.9 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|242398921|ref|YP_002994345.1| - 0.019 14.7 0.0 0.66 9.7 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|242398921|ref|YP_002994345.1| - 0.043 13.9 0.0 11 6.2 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Metallophos PF00149.28 gi|242398922|ref|YP_002994346.1| - 2.4e-07 31.5 0.4 1e-06 29.4 0.1 1.7 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|242398922|ref|YP_002994346.1| - 0.0036 17.5 0.0 0.0055 16.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PrsW-protease PF13367.6 gi|242398923|ref|YP_002994347.1| - 2.5e-31 108.6 17.3 3.5e-31 108.2 17.3 1.2 1 0 0 1 1 1 1 PrsW family intramembrane metalloprotease YhfC PF10086.9 gi|242398923|ref|YP_002994347.1| - 1e-05 25.1 5.6 1e-05 25.1 5.6 2.1 2 0 0 2 2 2 1 YhfC intramembrane metalloprotease Tex_N PF09371.10 gi|242398924|ref|YP_002994348.1| - 0.005 16.5 0.7 0.0054 16.4 0.7 1.1 1 0 0 1 1 1 1 Tex-like protein N-terminal domain OPT PF03169.15 gi|242398925|ref|YP_002994349.1| - 6.2e-64 216.7 53.6 7.1e-64 216.5 53.6 1.0 1 0 0 1 1 1 1 OPT oligopeptide transporter protein TssN PF17555.2 gi|242398925|ref|YP_002994349.1| - 0.11 11.8 9.4 0.14 11.5 0.8 2.8 2 0 0 2 2 2 0 Type VI secretion system, TssN DUF2959 PF11172.8 gi|242398926|ref|YP_002994350.1| - 0.0039 17.3 1.0 0.0069 16.5 0.9 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2959) LigT_PEase PF02834.16 gi|242398926|ref|YP_002994350.1| - 0.005 17.0 0.3 0.21 11.8 0.0 2.2 1 1 1 2 2 2 1 LigT like Phosphoesterase MEDS PF14417.6 gi|242398926|ref|YP_002994350.1| - 0.012 15.4 0.3 0.017 14.9 0.3 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Laminin_I PF06008.14 gi|242398926|ref|YP_002994350.1| - 0.016 14.9 0.2 0.021 14.5 0.2 1.2 1 0 0 1 1 1 0 Laminin Domain I TBCA PF02970.16 gi|242398926|ref|YP_002994350.1| - 0.021 15.1 4.6 0.037 14.4 4.6 1.3 1 0 0 1 1 1 0 Tubulin binding cofactor A DUF745 PF05335.13 gi|242398926|ref|YP_002994350.1| - 0.033 13.9 0.4 0.045 13.5 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF745) DUF1664 PF07889.12 gi|242398926|ref|YP_002994350.1| - 0.04 14.0 0.1 0.06 13.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) GAF_3 PF13492.6 gi|242398926|ref|YP_002994350.1| - 0.05 14.0 0.0 0.069 13.5 0.0 1.2 1 0 0 1 1 1 0 GAF domain CheZ PF04344.13 gi|242398926|ref|YP_002994350.1| - 0.052 13.5 0.1 0.066 13.1 0.1 1.1 1 0 0 1 1 1 0 Chemotaxis phosphatase, CheZ DUF1043 PF06295.12 gi|242398926|ref|YP_002994350.1| - 0.058 13.4 0.1 0.086 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) DUF3618 PF12277.8 gi|242398926|ref|YP_002994350.1| - 0.074 13.3 0.2 0.17 12.2 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) DUF4404 PF14357.6 gi|242398926|ref|YP_002994350.1| - 0.077 13.6 3.7 0.13 12.9 3.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) TACC_C PF05010.14 gi|242398926|ref|YP_002994350.1| - 0.08 12.7 5.3 0.11 12.3 5.3 1.3 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF2884 PF11101.8 gi|242398926|ref|YP_002994350.1| - 0.083 12.4 0.8 0.12 11.8 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) DUF641 PF04859.12 gi|242398926|ref|YP_002994350.1| - 0.087 13.2 2.1 0.16 12.3 2.1 1.4 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Goodbye PF17109.5 gi|242398926|ref|YP_002994350.1| - 0.11 13.0 1.6 0.28 11.6 0.3 2.0 2 0 0 2 2 2 0 fungal STAND N-terminal Goodbye domain Fzo_mitofusin PF04799.13 gi|242398926|ref|YP_002994350.1| - 0.12 11.9 0.2 0.17 11.4 0.2 1.4 1 0 0 1 1 1 0 fzo-like conserved region TPR_2 PF07719.17 gi|242398926|ref|YP_002994350.1| - 1.5 9.1 8.3 48 4.4 0.1 4.6 3 2 1 5 5 5 0 Tetratricopeptide repeat DUF5627 PF18620.1 gi|242398927|ref|YP_002994351.1| - 0.0028 17.5 3.9 0.0052 16.7 0.0 2.7 2 1 0 2 2 2 1 Family of unknown function (DUF5627) zf-CCCH_7 PF18586.1 gi|242398927|ref|YP_002994351.1| - 0.24 11.8 1.2 1.4 9.3 0.0 2.5 3 0 0 3 3 3 0 Chromatin remodeling factor Mit1 C-terminal Zn finger 1 SSP160 PF06933.11 gi|242398927|ref|YP_002994351.1| - 0.94 7.6 9.9 1.4 7.1 9.9 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF3601 PF12208.8 gi|242398928|ref|YP_002994352.1| - 0.027 14.5 0.5 0.094 12.8 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3601) DUF4845 PF16137.5 gi|242398928|ref|YP_002994352.1| - 0.033 15.1 0.1 1.4 9.9 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4845) NIR_SIR PF01077.22 gi|242398928|ref|YP_002994352.1| - 0.11 12.0 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 Nitrite and sulphite reductase 4Fe-4S domain DUF4422 PF14393.6 gi|242398929|ref|YP_002994353.1| - 0.095 12.5 0.0 0.095 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4422) AAA_31 PF13614.6 gi|242398930|ref|YP_002994354.1| - 9.3e-64 214.6 0.2 2.2e-63 213.4 0.4 1.5 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|242398930|ref|YP_002994354.1| - 6.6e-26 90.9 0.1 8.4e-26 90.5 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|242398930|ref|YP_002994354.1| - 1.1e-16 61.0 0.0 1.8e-16 60.4 0.0 1.3 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|242398930|ref|YP_002994354.1| - 1.2e-15 57.6 0.2 7.5e-15 55.1 0.2 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|242398930|ref|YP_002994354.1| - 1.5e-13 50.8 0.1 9.3e-13 48.2 0.1 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|242398930|ref|YP_002994354.1| - 7.8e-13 48.3 0.5 1.4e-11 44.2 0.2 2.3 2 1 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|242398930|ref|YP_002994354.1| - 1.1e-06 28.1 1.6 0.00019 20.7 0.4 2.5 3 0 0 3 3 3 2 Anion-transporting ATPase VirC1 PF07015.11 gi|242398930|ref|YP_002994354.1| - 0.00046 19.6 0.4 0.0022 17.3 0.2 1.9 2 0 0 2 2 2 1 VirC1 protein ATP_bind_1 PF03029.17 gi|242398930|ref|YP_002994354.1| - 0.0067 16.2 0.2 0.067 13.0 0.2 2.1 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 gi|242398930|ref|YP_002994354.1| - 0.0067 16.2 0.1 0.018 14.8 0.0 1.7 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|242398930|ref|YP_002994354.1| - 0.0096 15.6 0.4 0.5 10.0 0.2 2.4 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain DUF1938 PF09153.10 gi|242398930|ref|YP_002994354.1| - 0.045 13.8 0.0 0.095 12.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1938) MeaB PF03308.16 gi|242398930|ref|YP_002994354.1| - 0.048 12.6 0.1 0.083 11.8 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|242398930|ref|YP_002994354.1| - 0.053 13.1 0.1 0.13 11.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain DUF1611 PF07755.11 gi|242398930|ref|YP_002994354.1| - 0.057 12.7 0.2 0.11 11.8 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain AAA_24 PF13479.6 gi|242398930|ref|YP_002994354.1| - 0.064 13.0 0.0 0.13 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain FTHFS PF01268.19 gi|242398930|ref|YP_002994354.1| - 0.15 10.2 0.3 0.2 9.8 0.3 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Exo_endo_phos PF03372.23 gi|242398931|ref|YP_002994355.1| - 3.3e-07 30.1 0.0 6.3e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Herpes_LMP1 PF05297.11 gi|242398931|ref|YP_002994355.1| - 2.3 7.3 7.7 4 6.5 7.7 1.4 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Gp_dh_C PF02800.20 gi|242398932|ref|YP_002994356.1| - 6.4e-32 110.3 0.1 9.2e-32 109.8 0.1 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|242398932|ref|YP_002994356.1| - 6.2e-15 55.4 0.7 3.6e-14 52.9 0.3 2.1 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|242398932|ref|YP_002994356.1| - 2.2e-05 24.7 0.5 0.00011 22.5 0.0 2.5 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|242398932|ref|YP_002994356.1| - 8.9e-05 21.9 0.2 0.054 12.8 0.2 2.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|242398932|ref|YP_002994356.1| - 0.00075 20.3 0.0 0.0028 18.4 0.0 1.9 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|242398932|ref|YP_002994356.1| - 0.0052 17.4 0.0 0.099 13.3 0.0 2.8 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain PhzC-PhzF PF02567.16 gi|242398933|ref|YP_002994357.1| - 1.9e-59 201.4 0.0 2.5e-59 201.1 0.0 1.1 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DUF167 PF02594.16 gi|242398935|ref|YP_002994359.1| - 5.7e-24 84.0 0.2 7.4e-24 83.7 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF402 PF04167.13 gi|242398936|ref|YP_002994360.1| - 4.1e-12 46.1 0.7 6.5e-12 45.5 0.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF402) HGTP_anticodon PF03129.20 gi|242398937|ref|YP_002994361.1| - 1.1e-24 86.4 1.4 7.8e-24 83.7 0.2 2.6 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|242398937|ref|YP_002994361.1| - 1.3e-10 41.5 0.3 8.3e-10 38.9 0.1 2.5 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|242398937|ref|YP_002994361.1| - 7.6e-05 21.9 0.6 0.24 10.4 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) Zn-ribbon_8 PF09723.10 gi|242398937|ref|YP_002994361.1| - 0.0021 18.2 0.2 1.8 8.7 0.0 2.6 2 0 0 2 2 2 2 Zinc ribbon domain tRNA_synthFbeta PF17759.1 gi|242398937|ref|YP_002994361.1| - 0.01 15.3 0.0 0.065 12.7 0.0 2.1 1 1 0 1 1 1 0 Phenylalanyl tRNA synthetase beta chain CLM domain zf-ribbon_3 PF13248.6 gi|242398937|ref|YP_002994361.1| - 0.023 14.1 0.6 0.36 10.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain tRNA-synt_2d PF01409.20 gi|242398937|ref|YP_002994361.1| - 0.037 13.5 0.9 0.46 9.9 0.0 2.9 3 1 0 3 3 3 0 tRNA synthetases class II core domain (F) F-actin_cap_A PF01267.17 gi|242398937|ref|YP_002994361.1| - 0.068 12.6 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 F-actin capping protein alpha subunit DNA_RNApol_7kD PF03604.13 gi|242398937|ref|YP_002994361.1| - 0.089 12.5 1.8 5.6 6.7 0.2 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Plectin PF00681.20 gi|242398937|ref|YP_002994361.1| - 0.11 12.3 0.0 11 6.0 0.0 2.5 2 0 0 2 2 2 0 Plectin repeat TF_Zn_Ribbon PF08271.12 gi|242398937|ref|YP_002994361.1| - 0.16 11.5 0.5 6.8 6.3 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding XPA_N PF01286.18 gi|242398937|ref|YP_002994361.1| - 0.16 12.0 1.3 8.5 6.5 0.0 2.4 2 0 0 2 2 2 0 XPA protein N-terminal CoA_trans PF01144.23 gi|242398938|ref|YP_002994362.1| - 1.6e-36 125.7 0.0 1.6e-33 116.0 0.0 3.1 3 2 0 3 3 3 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|242398938|ref|YP_002994362.1| - 2.4e-06 26.2 0.0 3.9e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter Metallophos_2 PF12850.7 gi|242398939|ref|YP_002994363.1| - 1.3e-24 87.3 0.0 2.4e-24 86.4 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|242398939|ref|YP_002994363.1| - 1.8e-21 77.6 0.7 3.4e-21 76.7 0.7 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|242398939|ref|YP_002994363.1| - 8.9e-19 67.8 0.7 1.3e-12 47.6 0.0 2.3 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily PFO_beta_C PF12367.8 gi|242398940|ref|YP_002994364.1| - 0.039 14.1 0.0 0.062 13.4 0.0 1.3 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF4263 PF14082.6 gi|242398940|ref|YP_002994364.1| - 0.085 13.1 0.0 0.091 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4263) MKT1_C PF12246.8 gi|242398940|ref|YP_002994364.1| - 0.13 11.5 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 Temperature dependent protein affecting M2 dsRNA replication DS PF01916.17 gi|242398941|ref|YP_002994365.1| - 4.8e-115 383.8 0.0 5.8e-115 383.5 0.0 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase BLI1 PF17324.2 gi|242398941|ref|YP_002994365.1| - 0.098 13.3 0.1 0.25 12.0 0.1 1.6 1 0 0 1 1 1 0 BLOC-1 interactor 1 ATPase_2 PF01637.18 gi|242398942|ref|YP_002994366.1| - 1.3e-30 107.0 0.3 3.9e-29 102.2 0.3 2.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|242398942|ref|YP_002994366.1| - 4.6e-30 104.0 0.7 1.2e-29 102.7 0.7 1.7 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|242398942|ref|YP_002994366.1| - 6.3e-10 39.2 0.0 1.2e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|242398942|ref|YP_002994366.1| - 2.1e-05 24.9 0.0 6.7e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain MarR_2 PF12802.7 gi|242398942|ref|YP_002994366.1| - 0.00013 21.8 0.0 0.00029 20.6 0.0 1.6 1 0 0 1 1 1 1 MarR family AAA_22 PF13401.6 gi|242398942|ref|YP_002994366.1| - 0.00046 20.5 0.1 0.012 15.9 0.1 2.8 2 1 0 2 2 2 1 AAA domain DUF4143 PF13635.6 gi|242398942|ref|YP_002994366.1| - 0.0012 19.0 0.1 0.0048 17.0 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4143) AAA PF00004.29 gi|242398942|ref|YP_002994366.1| - 0.0068 16.8 0.0 0.028 14.8 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TrmB PF01978.19 gi|242398942|ref|YP_002994366.1| - 0.012 15.5 0.0 0.043 13.7 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB NB-ARC PF00931.22 gi|242398942|ref|YP_002994366.1| - 0.055 12.7 0.0 0.097 11.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain HTH_5 PF01022.20 gi|242398942|ref|YP_002994366.1| - 0.076 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TniB PF05621.11 gi|242398942|ref|YP_002994366.1| - 0.12 11.8 0.1 4.6 6.6 0.0 2.5 3 0 0 3 3 3 0 Bacterial TniB protein RNA_helicase PF00910.22 gi|242398942|ref|YP_002994366.1| - 0.16 12.4 0.0 0.8 10.1 0.0 2.0 1 1 0 1 1 1 0 RNA helicase DUF2157 PF09925.9 gi|242398944|ref|YP_002994368.1| - 0.0043 16.8 1.4 0.0043 16.8 1.4 2.8 1 1 1 2 2 2 1 Predicted membrane protein (DUF2157) DUF2723 PF11028.8 gi|242398944|ref|YP_002994368.1| - 0.011 15.7 3.4 0.031 14.2 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2723) Na_H_antiporter PF03553.14 gi|242398944|ref|YP_002994368.1| - 0.021 14.1 14.1 0.18 11.0 3.7 2.1 1 1 1 2 2 2 0 Na+/H+ antiporter family SPC25 PF06703.11 gi|242398944|ref|YP_002994368.1| - 0.72 9.6 5.8 0.1 12.4 0.8 2.0 2 0 0 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) DUF4131 PF13567.6 gi|242398944|ref|YP_002994368.1| - 7.2 6.2 9.2 0.25 11.0 0.2 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) Rhomboid PF01694.22 gi|242398945|ref|YP_002994369.1| - 3.1e-05 24.0 8.6 3.1e-05 24.0 8.6 2.5 2 1 1 3 3 3 1 Rhomboid family Pox_A14 PF05767.12 gi|242398945|ref|YP_002994369.1| - 0.0093 16.1 0.5 0.0093 16.1 0.5 2.2 2 2 1 3 3 3 1 Poxvirus virion envelope protein A14 MoeA_N PF03453.17 gi|242398946|ref|YP_002994370.1| - 8.5e-47 158.8 0.1 1.2e-46 158.3 0.1 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|242398946|ref|YP_002994370.1| - 1.5e-17 63.6 0.0 3.8e-17 62.3 0.0 1.7 1 1 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|242398946|ref|YP_002994370.1| - 7.6e-17 61.3 0.1 3.1e-16 59.3 0.0 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Cyanate_lyase PF02560.14 gi|242398946|ref|YP_002994370.1| - 0.078 12.8 0.2 1.6 8.6 0.1 2.5 2 0 0 2 2 2 0 Cyanate lyase C-terminal domain MoCF_biosynth PF00994.24 gi|242398947|ref|YP_002994371.1| - 3.3e-38 130.6 0.1 3.7e-38 130.4 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain LacAB_rpiB PF02502.18 gi|242398947|ref|YP_002994371.1| - 0.063 13.3 0.1 10 6.1 0.0 2.1 2 0 0 2 2 2 0 Ribose/Galactose Isomerase ATPase_2 PF01637.18 gi|242398948|ref|YP_002994372.1| - 8.8e-35 120.7 0.1 8.8e-35 120.7 0.1 1.8 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|242398948|ref|YP_002994372.1| - 8.3e-32 109.6 0.7 1.9e-31 108.5 0.7 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|242398948|ref|YP_002994372.1| - 3.5e-08 33.6 0.1 1e-07 32.0 0.1 1.9 1 0 0 1 1 1 1 AAA domain HTH_5 PF01022.20 gi|242398948|ref|YP_002994372.1| - 3.1e-06 27.0 0.0 8.6e-06 25.5 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family AAA_16 PF13191.6 gi|242398948|ref|YP_002994372.1| - 4.4e-06 27.2 0.0 9.9e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain HTH_45 PF14947.6 gi|242398948|ref|YP_002994372.1| - 8e-05 22.6 0.0 0.00025 21.0 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix AAA_22 PF13401.6 gi|242398948|ref|YP_002994372.1| - 0.00018 21.8 0.0 0.00041 20.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.10 gi|242398948|ref|YP_002994372.1| - 0.00024 20.8 0.0 0.0007 19.3 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain UPF0102 PF02021.17 gi|242398948|ref|YP_002994372.1| - 0.006 16.8 0.1 0.021 15.1 0.1 1.9 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HTH_9 PF08221.11 gi|242398948|ref|YP_002994372.1| - 0.011 15.8 0.0 0.03 14.4 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TFIIE_alpha PF02002.17 gi|242398948|ref|YP_002994372.1| - 0.017 14.9 0.1 0.27 11.1 0.0 2.4 2 0 0 2 2 2 0 TFIIE alpha subunit AAA PF00004.29 gi|242398948|ref|YP_002994372.1| - 0.028 14.8 0.0 0.099 13.1 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Methyltransf_25 PF13649.6 gi|242398949|ref|YP_002994373.1| - 4e-26 91.5 0.0 1.5e-25 89.7 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|242398949|ref|YP_002994373.1| - 3.4e-21 75.7 0.0 1.9e-20 73.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|242398949|ref|YP_002994373.1| - 2.5e-18 66.3 0.0 3.2e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|242398949|ref|YP_002994373.1| - 9.9e-16 57.8 0.2 1.7e-15 57.0 0.2 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|242398949|ref|YP_002994373.1| - 2.1e-13 50.9 0.0 7.2e-13 49.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|242398949|ref|YP_002994373.1| - 2.7e-10 40.3 0.0 4.6e-10 39.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|242398949|ref|YP_002994373.1| - 6.5e-09 35.6 0.0 9.5e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|242398949|ref|YP_002994373.1| - 3.7e-08 33.0 0.0 4.5e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|242398949|ref|YP_002994373.1| - 2.8e-05 23.6 0.0 4.4e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|242398949|ref|YP_002994373.1| - 7.1e-05 22.0 0.1 0.00011 21.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.17 gi|242398949|ref|YP_002994373.1| - 0.00026 20.2 0.1 0.00034 19.9 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase NodS PF05401.11 gi|242398949|ref|YP_002994373.1| - 0.00039 20.1 0.0 0.00067 19.3 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) PrmA PF06325.13 gi|242398949|ref|YP_002994373.1| - 0.00074 19.0 0.0 0.001 18.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|242398949|ref|YP_002994373.1| - 0.0014 18.2 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|242398949|ref|YP_002994373.1| - 0.0019 18.2 0.0 0.0033 17.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|242398949|ref|YP_002994373.1| - 0.0019 18.2 0.0 0.0024 17.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.18 gi|242398949|ref|YP_002994373.1| - 0.002 17.6 0.1 0.084 12.3 0.1 2.4 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain MethyltransfD12 PF02086.15 gi|242398949|ref|YP_002994373.1| - 0.0021 17.8 0.1 0.0031 17.2 0.1 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_2 PF00891.18 gi|242398949|ref|YP_002994373.1| - 0.0029 16.9 0.0 0.0044 16.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain FtsJ PF01728.19 gi|242398949|ref|YP_002994373.1| - 0.0065 16.6 0.0 0.042 14.0 0.0 2.2 1 1 0 1 1 1 1 FtsJ-like methyltransferase TPMT PF05724.11 gi|242398949|ref|YP_002994373.1| - 0.0065 16.1 0.0 0.013 15.1 0.0 1.5 2 0 0 2 2 2 1 Thiopurine S-methyltransferase (TPMT) UPF0020 PF01170.18 gi|242398949|ref|YP_002994373.1| - 0.0087 15.8 0.0 0.016 14.9 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.17 gi|242398949|ref|YP_002994373.1| - 0.012 15.1 0.0 0.027 14.0 0.0 1.6 1 1 0 1 1 1 0 Putative methyltransferase PCMT PF01135.19 gi|242398949|ref|YP_002994373.1| - 0.041 13.6 0.0 0.063 13.0 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Bin3 PF06859.12 gi|242398949|ref|YP_002994373.1| - 0.061 14.0 0.0 0.46 11.1 0.0 2.1 2 0 0 2 2 2 0 Bicoid-interacting protein 3 (Bin3) Methyltr_RsmB-F PF01189.17 gi|242398949|ref|YP_002994373.1| - 0.071 12.7 0.0 2.5 7.7 0.0 2.2 2 0 0 2 2 2 0 16S rRNA methyltransferase RsmB/F AdoMet_MTase PF07757.13 gi|242398949|ref|YP_002994373.1| - 0.078 13.3 0.2 2 8.8 0.0 2.5 2 1 0 2 2 2 0 Predicted AdoMet-dependent methyltransferase N2227 PF07942.12 gi|242398949|ref|YP_002994373.1| - 0.13 11.4 0.5 6.5 5.8 0.0 2.1 1 1 1 2 2 2 0 N2227-like protein adh_short PF00106.25 gi|242398949|ref|YP_002994373.1| - 0.23 10.9 0.0 0.34 10.3 0.0 1.2 1 0 0 1 1 1 0 short chain dehydrogenase tRNA-synt_1 PF00133.22 gi|242398951|ref|YP_002994375.1| - 1.4e-146 489.2 0.4 2.1e-145 485.3 0.4 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|242398951|ref|YP_002994375.1| - 2.3e-38 131.5 0.8 5.1e-38 130.4 0.8 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|242398951|ref|YP_002994375.1| - 3.6e-26 91.8 0.2 7e-17 61.2 0.0 3.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|242398951|ref|YP_002994375.1| - 4.3e-06 26.3 0.0 0.057 12.7 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|242398951|ref|YP_002994375.1| - 5.2e-06 26.1 0.1 3.1e-05 23.6 0.1 2.1 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 zf-TFIIB PF13453.6 gi|242398951|ref|YP_002994375.1| - 0.001 18.3 0.9 2 7.8 0.0 3.1 3 0 0 3 3 3 2 Transcription factor zinc-finger HypA PF01155.19 gi|242398951|ref|YP_002994375.1| - 0.0055 16.7 2.2 0.44 10.6 0.1 2.9 3 0 0 3 3 3 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2250 PF10007.9 gi|242398951|ref|YP_002994375.1| - 0.017 15.3 1.5 2.6 8.2 0.0 2.8 3 0 0 3 3 2 0 Uncharacterized protein conserved in archaea (DUF2250) Zn-ribbon_8 PF09723.10 gi|242398951|ref|YP_002994375.1| - 0.03 14.4 1.9 0.37 10.9 0.4 2.6 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|242398951|ref|YP_002994375.1| - 0.036 14.1 0.4 1 9.4 0.1 2.3 2 0 0 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|242398951|ref|YP_002994375.1| - 0.064 12.8 4.7 2 8.0 0.2 3.4 3 0 0 3 3 3 0 TFIIB zinc-binding NID PF07292.13 gi|242398951|ref|YP_002994375.1| - 0.11 13.1 0.1 1.7 9.3 0.0 2.5 2 0 0 2 2 2 0 Nmi/IFP 35 domain (NID) zf_UBZ PF18439.1 gi|242398951|ref|YP_002994375.1| - 0.34 10.5 5.1 7.6 6.2 0.1 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|242398951|ref|YP_002994375.1| - 1.7 8.5 8.2 0.92 9.3 0.7 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-ACC PF17848.1 gi|242398951|ref|YP_002994375.1| - 1.9 8.7 8.6 29 4.9 0.6 3.6 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 gi|242398951|ref|YP_002994375.1| - 2 8.0 6.0 3.8 7.0 0.4 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.8 gi|242398951|ref|YP_002994375.1| - 3.8 7.5 6.0 2.6 8.0 0.1 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ATPase_2 PF01637.18 gi|242398952|ref|YP_002994376.1| - 7.8e-24 84.9 0.6 1.1e-23 84.4 0.6 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|242398952|ref|YP_002994376.1| - 2.9e-09 37.0 0.0 1.2e-07 31.9 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|242398952|ref|YP_002994376.1| - 1.5e-06 28.5 0.0 3.2e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|242398952|ref|YP_002994376.1| - 0.00027 21.4 0.0 0.00044 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain RNA_Me_trans PF04252.13 gi|242398953|ref|YP_002994377.1| - 7.3e-07 29.0 0.1 1.5e-06 27.9 0.0 1.5 2 0 0 2 2 2 1 Predicted SAM-dependent RNA methyltransferase Jag_N PF14804.6 gi|242398954|ref|YP_002994378.1| - 0.087 13.2 0.1 0.19 12.1 0.1 1.5 1 0 0 1 1 1 0 Jag N-terminus Peptidase_M48 PF01435.18 gi|242398955|ref|YP_002994379.1| - 1.7e-37 129.1 0.0 3.1e-37 128.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|242398955|ref|YP_002994379.1| - 2.7e-05 23.5 0.1 4.8e-05 22.7 0.0 1.5 2 0 0 2 2 2 1 BlaR1 peptidase M56 DUF996 PF06195.13 gi|242398955|ref|YP_002994379.1| - 0.019 15.3 2.0 0.054 13.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF996) Abhydrolase_9_N PF15420.6 gi|242398955|ref|YP_002994379.1| - 0.8 9.7 7.1 2.9 7.8 0.4 2.3 2 0 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus MadM PF03818.13 gi|242398955|ref|YP_002994379.1| - 2.2 8.2 9.2 0.55 10.1 0.6 3.2 2 1 1 3 3 3 0 Malonate/sodium symporter MadM subunit AAA_18 PF13238.6 gi|242398956|ref|YP_002994380.1| - 2.3e-21 76.7 0.5 7.3e-21 75.1 0.2 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|242398956|ref|YP_002994380.1| - 2.8e-07 31.0 0.3 9.3e-07 29.3 0.3 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|242398956|ref|YP_002994380.1| - 3.2e-07 30.9 1.0 3.8e-06 27.4 0.2 2.7 1 1 0 2 2 2 1 AAA domain SKI PF01202.22 gi|242398956|ref|YP_002994380.1| - 3.7e-07 30.4 0.6 8.3e-06 26.0 0.6 2.1 1 1 0 1 1 1 1 Shikimate kinase dNK PF01712.19 gi|242398956|ref|YP_002994380.1| - 6.1e-07 29.5 0.3 0.014 15.3 0.0 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase Cytidylate_kin PF02224.18 gi|242398956|ref|YP_002994380.1| - 1.6e-06 28.0 0.1 0.0044 16.8 0.0 2.3 2 0 0 2 2 2 2 Cytidylate kinase AAA_28 PF13521.6 gi|242398956|ref|YP_002994380.1| - 1.5e-05 25.3 0.1 4.3e-05 23.8 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|242398956|ref|YP_002994380.1| - 2.2e-05 24.5 0.3 0.12 12.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|242398956|ref|YP_002994380.1| - 3.3e-05 24.1 0.1 0.0012 19.0 0.1 2.4 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|242398956|ref|YP_002994380.1| - 6.4e-05 23.2 0.2 0.00029 21.0 0.0 1.9 2 1 0 2 2 2 1 Cytidylate kinase-like family AAA_22 PF13401.6 gi|242398956|ref|YP_002994380.1| - 0.00034 20.9 0.6 0.0029 17.9 0.6 2.1 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|242398956|ref|YP_002994380.1| - 0.00073 19.3 1.0 0.44 10.2 0.2 2.2 2 0 0 2 2 2 2 Thymidylate kinase AAA_16 PF13191.6 gi|242398956|ref|YP_002994380.1| - 0.001 19.5 0.0 0.0015 18.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|242398956|ref|YP_002994380.1| - 0.0011 18.3 0.1 0.0027 17.0 0.0 1.7 2 1 0 2 2 2 1 Zeta toxin RuvB_N PF05496.12 gi|242398956|ref|YP_002994380.1| - 0.0031 17.3 0.0 0.0067 16.2 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain UPF0180 PF03698.13 gi|242398956|ref|YP_002994380.1| - 0.0065 16.6 1.8 0.085 13.0 1.0 2.6 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0180) NACHT PF05729.12 gi|242398956|ref|YP_002994380.1| - 0.0072 16.3 0.0 0.0087 16.0 0.0 1.3 1 1 0 1 1 1 1 NACHT domain AAA_30 PF13604.6 gi|242398956|ref|YP_002994380.1| - 0.016 14.9 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|242398956|ref|YP_002994380.1| - 0.018 14.9 1.1 0.041 13.8 0.2 2.0 2 1 0 2 2 2 0 NTPase KTI12 PF08433.10 gi|242398956|ref|YP_002994380.1| - 0.02 14.3 0.0 0.034 13.6 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Rad17 PF03215.15 gi|242398956|ref|YP_002994380.1| - 0.022 14.7 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain PRK PF00485.18 gi|242398956|ref|YP_002994380.1| - 0.024 14.4 0.1 0.69 9.6 0.0 2.1 1 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_3 PF07726.11 gi|242398956|ref|YP_002994380.1| - 0.025 14.5 0.1 0.15 11.9 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CoaE PF01121.20 gi|242398956|ref|YP_002994380.1| - 0.027 14.2 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 Dephospho-CoA kinase RNA_helicase PF00910.22 gi|242398956|ref|YP_002994380.1| - 0.042 14.2 0.0 0.076 13.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|242398956|ref|YP_002994380.1| - 0.043 14.3 0.0 0.056 13.9 0.0 1.3 1 1 0 1 1 1 0 ABC transporter TsaE PF02367.17 gi|242398956|ref|YP_002994380.1| - 0.046 13.7 0.6 0.12 12.4 0.1 1.9 2 1 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_2 PF03668.15 gi|242398956|ref|YP_002994380.1| - 0.046 13.0 0.3 0.069 12.4 0.3 1.3 1 1 0 1 1 1 0 P-loop ATPase protein family DUF5028 PF16431.5 gi|242398956|ref|YP_002994380.1| - 0.049 13.6 0.1 0.069 13.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5028) NB-ARC PF00931.22 gi|242398956|ref|YP_002994380.1| - 0.063 12.5 0.9 0.069 12.3 0.9 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 gi|242398956|ref|YP_002994380.1| - 0.095 12.7 0.2 0.2 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain ADK PF00406.22 gi|242398956|ref|YP_002994380.1| - 0.098 12.8 0.1 2.5 8.2 0.0 2.3 2 0 0 2 2 2 0 Adenylate kinase AAA_24 PF13479.6 gi|242398956|ref|YP_002994380.1| - 0.1 12.3 0.3 0.13 12.0 0.2 1.4 1 1 0 1 1 1 0 AAA domain ParA PF10609.9 gi|242398956|ref|YP_002994380.1| - 0.13 11.7 0.1 0.26 10.7 0.1 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AdoMet_Synthase PF01941.19 gi|242398958|ref|YP_002994382.1| - 3.7e-179 595.6 5.5 4.2e-179 595.4 5.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|242398958|ref|YP_002994382.1| - 0.036 14.7 0.1 0.29 11.8 0.0 2.5 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain E3_UbLigase_EDD PF11547.8 gi|242398958|ref|YP_002994382.1| - 0.23 11.2 0.8 7.2 6.4 0.1 2.8 2 0 0 2 2 2 0 E3 ubiquitin ligase EDD Translin PF01997.16 gi|242398959|ref|YP_002994383.1| - 1.3e-15 58.0 0.8 5.6e-14 52.6 0.8 2.3 1 1 0 1 1 1 1 Translin family PIN_12 PF16289.5 gi|242398959|ref|YP_002994383.1| - 0.14 12.7 1.9 0.29 11.6 0.1 2.0 2 0 0 2 2 2 0 PIN domain NBD94 PF16830.5 gi|242398959|ref|YP_002994383.1| - 2.2 8.7 13.0 0.19 12.1 1.9 3.0 2 2 1 3 3 3 0 Nucleotide-Binding Domain 94 of RH FliS PF02561.14 gi|242398959|ref|YP_002994383.1| - 4.4 7.6 9.7 2.1 8.6 0.3 3.5 2 2 2 4 4 4 0 Flagellar protein FliS Endonuclease_5 PF04493.14 gi|242398960|ref|YP_002994384.1| - 1.3e-37 129.4 0.0 4.3e-32 111.4 0.0 2.0 1 1 1 2 2 2 2 Endonuclease V CTP-dep_RFKase PF01982.16 gi|242398961|ref|YP_002994385.1| - 1.1e-39 135.3 0.0 1.7e-39 134.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_24 PF13412.6 gi|242398961|ref|YP_002994385.1| - 4.4e-07 29.4 0.1 8.3e-07 28.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|242398961|ref|YP_002994385.1| - 5.5e-06 26.2 0.0 8.7e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|242398961|ref|YP_002994385.1| - 7.3e-06 25.9 0.1 1.1e-05 25.3 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|242398961|ref|YP_002994385.1| - 0.00014 21.6 0.1 0.0018 18.0 0.0 2.2 2 0 0 2 2 2 1 LexA DNA binding domain HTH_11 PF08279.12 gi|242398961|ref|YP_002994385.1| - 0.00033 20.5 0.1 0.00078 19.3 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.6 gi|242398961|ref|YP_002994385.1| - 0.00068 19.8 0.1 0.0022 18.1 0.1 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|242398961|ref|YP_002994385.1| - 0.00075 19.6 0.1 0.002 18.3 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|242398961|ref|YP_002994385.1| - 0.0011 18.8 0.1 0.0022 17.8 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|242398961|ref|YP_002994385.1| - 0.0019 18.1 0.1 0.0034 17.3 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|242398961|ref|YP_002994385.1| - 0.0048 16.7 0.0 0.0077 16.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|242398961|ref|YP_002994385.1| - 0.0096 15.6 0.1 0.019 14.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family RepL PF05732.11 gi|242398961|ref|YP_002994385.1| - 0.01 15.3 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) B-block_TFIIIC PF04182.12 gi|242398961|ref|YP_002994385.1| - 0.012 15.8 0.1 0.021 15.0 0.1 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Rrf2 PF02082.20 gi|242398961|ref|YP_002994385.1| - 0.016 15.5 0.1 0.028 14.8 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_53 PF18606.1 gi|242398961|ref|YP_002994385.1| - 0.018 14.7 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 Zap helix turn helix N-terminal domain HTH_27 PF13463.6 gi|242398961|ref|YP_002994385.1| - 0.033 14.7 0.1 0.055 14.0 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|242398961|ref|YP_002994385.1| - 0.036 14.1 0.0 0.072 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|242398961|ref|YP_002994385.1| - 0.045 13.6 0.2 0.11 12.4 0.2 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF104 PF01954.16 gi|242398961|ref|YP_002994385.1| - 0.048 14.1 2.7 1.2 9.7 0.3 2.7 2 0 0 2 2 2 0 Protein of unknown function DUF104 FeoC PF09012.10 gi|242398961|ref|YP_002994385.1| - 0.065 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_5 PF01022.20 gi|242398961|ref|YP_002994385.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4364 PF14277.6 gi|242398961|ref|YP_002994385.1| - 0.1 12.3 0.1 0.27 11.0 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) IF2_N PF04760.15 gi|242398961|ref|YP_002994385.1| - 0.12 12.3 0.1 0.4 10.5 0.0 1.9 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Ribosomal_S19e PF01090.19 gi|242398961|ref|YP_002994385.1| - 0.16 11.7 0.1 0.3 10.8 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e Glyco_hydro_38 PF18438.1 gi|242398961|ref|YP_002994385.1| - 0.17 11.9 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolases family 38 C-terminal domain 1 PRC PF05239.16 gi|242398963|ref|YP_002994387.1| - 6.1e-13 48.7 0.5 6.9e-13 48.5 0.5 1.0 1 0 0 1 1 1 1 PRC-barrel domain TrkA_N PF02254.18 gi|242398964|ref|YP_002994388.1| - 6.8e-18 65.0 0.7 6.8e-18 65.0 0.7 2.2 3 0 0 3 3 1 1 TrkA-N domain DHHA1 PF02272.19 gi|242398964|ref|YP_002994388.1| - 3.8e-12 46.8 0.8 3.8e-12 46.8 0.8 3.2 3 1 1 4 4 4 1 DHHA1 domain DHH PF01368.20 gi|242398964|ref|YP_002994388.1| - 1.9e-11 44.1 0.2 2.3e-10 40.6 0.1 2.2 2 0 0 2 2 2 1 DHH family Sacchrp_dh_NADP PF03435.18 gi|242398964|ref|YP_002994388.1| - 1.8e-05 25.0 1.1 4.8e-05 23.6 0.2 2.2 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|242398964|ref|YP_002994388.1| - 0.00033 20.3 1.3 0.00058 19.5 0.4 1.9 2 0 0 2 2 2 1 NmrA-like family F420_oxidored PF03807.17 gi|242398964|ref|YP_002994388.1| - 0.00078 20.0 1.7 0.18 12.4 0.6 2.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|242398964|ref|YP_002994388.1| - 0.0023 17.6 1.3 0.0037 16.9 0.2 1.9 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|242398964|ref|YP_002994388.1| - 0.0032 17.9 0.4 0.018 15.5 0.1 2.4 1 1 1 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|242398964|ref|YP_002994388.1| - 0.0072 15.6 0.4 0.0072 15.6 0.4 2.2 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|242398964|ref|YP_002994388.1| - 0.012 15.3 0.2 0.038 13.6 0.2 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase Shikimate_DH PF01488.20 gi|242398964|ref|YP_002994388.1| - 0.015 15.3 0.4 0.041 13.9 0.4 1.8 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|242398964|ref|YP_002994388.1| - 0.017 14.5 1.8 0.11 11.8 0.1 2.6 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Mannosyl_trans3 PF11051.8 gi|242398964|ref|YP_002994388.1| - 0.031 13.7 0.8 0.051 12.9 0.8 1.3 1 0 0 1 1 1 0 Mannosyltransferase putative CbiJ PF02571.14 gi|242398964|ref|YP_002994388.1| - 0.07 12.6 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK Elong_Iki1 PF10483.9 gi|242398964|ref|YP_002994388.1| - 0.082 12.4 0.4 0.18 11.3 0.4 1.6 1 0 0 1 1 1 0 Elongator subunit Iki1 DUF421 PF04239.12 gi|242398964|ref|YP_002994388.1| - 0.096 12.5 5.4 5.8 6.7 0.1 3.0 2 2 1 3 3 3 0 Protein of unknown function (DUF421) AdoHcyase_NAD PF00670.21 gi|242398964|ref|YP_002994388.1| - 0.14 12.3 1.7 0.44 10.6 1.7 2.0 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DXP_reductoisom PF02670.16 gi|242398964|ref|YP_002994388.1| - 0.44 11.2 3.1 1.1 10.0 0.7 2.8 1 1 1 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DNA_ligase_A_C PF04679.15 gi|242398965|ref|YP_002994389.1| - 0.27 11.9 1.3 0.95 10.1 1.3 1.9 1 0 0 1 1 1 0 ATP dependent DNA ligase C terminal region zf-C4H2 PF10146.9 gi|242398965|ref|YP_002994389.1| - 0.56 10.5 11.9 0.18 12.1 2.4 2.6 2 0 0 2 2 2 0 Zinc finger-containing protein YtzH PF14165.6 gi|242398965|ref|YP_002994389.1| - 0.68 10.4 4.2 0.76 10.2 0.7 2.9 2 0 0 2 2 2 0 YtzH-like protein RNase_HII PF01351.18 gi|242398965|ref|YP_002994389.1| - 8.8 6.1 9.9 0.45 10.3 1.5 2.8 2 1 0 2 2 2 0 Ribonuclease HII EamA PF00892.20 gi|242398966|ref|YP_002994390.1| - 2.1e-45 154.3 42.0 9.2e-23 80.9 11.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|242398966|ref|YP_002994390.1| - 0.0013 18.2 19.7 0.1 12.0 6.6 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|242398966|ref|YP_002994390.1| - 0.0094 16.0 11.5 0.4 10.7 5.2 3.0 2 1 0 2 2 2 2 Putative transmembrane family 234 SID-1_RNA_chan PF13965.6 gi|242398966|ref|YP_002994390.1| - 4.4 5.6 6.4 6.3 5.1 6.4 1.2 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 AsnC_trans_reg PF01037.21 gi|242398967|ref|YP_002994391.1| - 1.3e-16 60.3 0.1 2.7e-16 59.3 0.1 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|242398967|ref|YP_002994391.1| - 2.4e-13 49.4 2.5 4.6e-13 48.5 2.5 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|242398967|ref|YP_002994391.1| - 4e-12 45.7 0.4 5.6e-12 45.3 0.4 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|242398967|ref|YP_002994391.1| - 0.00045 20.2 0.0 0.0008 19.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|242398967|ref|YP_002994391.1| - 0.00047 20.0 0.3 0.0011 18.8 0.3 1.6 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|242398967|ref|YP_002994391.1| - 0.0008 19.5 0.5 0.0018 18.4 0.5 1.8 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|242398967|ref|YP_002994391.1| - 0.0012 18.7 0.1 0.0023 17.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|242398967|ref|YP_002994391.1| - 0.0018 18.2 0.6 0.0045 16.9 0.6 1.8 1 1 0 1 1 1 1 HTH domain RNA_pol_Rpc34 PF05158.12 gi|242398967|ref|YP_002994391.1| - 0.0034 16.8 0.4 0.0047 16.4 0.4 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_27 PF13463.6 gi|242398967|ref|YP_002994391.1| - 0.0041 17.6 0.4 0.052 14.0 0.1 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|242398967|ref|YP_002994391.1| - 0.0041 17.4 0.2 0.075 13.4 0.2 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_34 PF13601.6 gi|242398967|ref|YP_002994391.1| - 0.0041 17.3 0.1 0.0076 16.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|242398967|ref|YP_002994391.1| - 0.018 14.8 0.1 0.062 13.1 0.1 1.8 2 0 0 2 2 2 0 LexA DNA binding domain HxlR PF01638.17 gi|242398967|ref|YP_002994391.1| - 0.024 14.5 0.3 0.046 13.6 0.1 1.6 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DDRGK PF09756.9 gi|242398967|ref|YP_002994391.1| - 0.037 13.6 1.4 0.059 12.9 1.4 1.3 1 0 0 1 1 1 0 DDRGK domain Rio2_N PF09202.11 gi|242398967|ref|YP_002994391.1| - 0.038 14.2 0.6 0.3 11.3 0.1 2.3 1 1 1 2 2 2 0 Rio2, N-terminal mCpol PF18182.1 gi|242398967|ref|YP_002994391.1| - 0.044 14.1 4.9 0.62 10.4 0.8 2.6 2 1 1 3 3 3 0 minimal CRISPR polymerase domain RuvB_C PF05491.13 gi|242398967|ref|YP_002994391.1| - 0.068 13.1 1.3 0.088 12.7 0.4 1.7 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain LYTB PF02401.18 gi|242398967|ref|YP_002994391.1| - 0.1 11.8 0.1 0.18 11.1 0.1 1.3 1 0 0 1 1 1 0 LytB protein TFIIE_alpha PF02002.17 gi|242398967|ref|YP_002994391.1| - 0.12 12.3 4.4 0.36 10.7 1.2 2.4 2 1 0 2 2 2 0 TFIIE alpha subunit Aminotran_1_2 PF00155.21 gi|242398968|ref|YP_002994392.1| - 7.3e-71 239.2 0.0 8.2e-71 239.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|242398968|ref|YP_002994392.1| - 1.5e-08 34.4 0.0 2.5e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|242398968|ref|YP_002994392.1| - 2.2e-05 23.6 0.0 0.01 14.8 0.0 2.7 2 1 1 3 3 3 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|242398968|ref|YP_002994392.1| - 2.2e-05 23.1 0.0 4.4e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|242398968|ref|YP_002994392.1| - 0.0001 21.3 0.2 0.0055 15.6 0.2 2.2 1 1 0 1 1 1 1 Allinase Beta_elim_lyase PF01212.21 gi|242398968|ref|YP_002994392.1| - 0.0016 17.8 0.0 0.009 15.3 0.0 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_3 PF00202.21 gi|242398968|ref|YP_002994392.1| - 0.081 11.6 0.1 0.2 10.3 0.0 1.6 2 0 0 2 2 2 0 Aminotransferase class-III SSF PF00474.17 gi|242398969|ref|YP_002994393.1| - 2e-56 191.6 29.5 2.6e-56 191.2 29.5 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family Topoisom_bac PF01131.20 gi|242398970|ref|YP_002994394.1| - 3.1e-125 418.4 0.2 2.1e-73 247.7 0.2 2.4 2 0 0 2 2 2 2 DNA topoisomerase Intein_splicing PF14890.6 gi|242398970|ref|YP_002994394.1| - 2.8e-20 72.6 0.0 2.8e-20 72.6 0.0 2.9 3 1 1 4 4 4 1 Intein splicing domain Toprim PF01751.22 gi|242398970|ref|YP_002994394.1| - 6.5e-19 68.1 0.0 6.5e-19 68.1 0.0 3.2 2 1 0 2 2 2 1 Toprim domain LAGLIDADG_3 PF14528.6 gi|242398970|ref|YP_002994394.1| - 4.8e-13 49.2 2.5 2.3e-12 47.1 0.0 3.2 3 0 0 3 3 2 1 LAGLIDADG-like domain zf-C4_Topoisom PF01396.19 gi|242398970|ref|YP_002994394.1| - 1e-12 47.6 1.6 1e-12 47.6 1.6 2.5 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger DUF1272 PF06906.11 gi|242398970|ref|YP_002994394.1| - 0.014 15.5 0.0 0.033 14.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DUF4364 PF14277.6 gi|242398970|ref|YP_002994394.1| - 0.34 10.6 8.3 0.23 11.2 0.8 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4364) Lar_restr_allev PF14354.6 gi|242398970|ref|YP_002994394.1| - 0.42 11.0 6.4 1.4 9.4 0.3 2.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|242398970|ref|YP_002994394.1| - 1.8 8.1 4.4 25 4.5 0.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|242398970|ref|YP_002994394.1| - 2.9 8.0 5.3 29 4.8 0.6 2.7 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Ogr_Delta PF04606.12 gi|242398970|ref|YP_002994394.1| - 8.9 6.4 5.7 0.94 9.5 0.4 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Lycopene_cycl PF05834.12 gi|242398971|ref|YP_002994395.1| - 2.4e-17 63.1 0.0 3.6e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|242398971|ref|YP_002994395.1| - 3.1e-17 62.8 1.2 1.3e-14 54.2 1.2 3.0 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|242398971|ref|YP_002994395.1| - 3.8e-12 46.0 0.4 1.1e-05 24.7 0.1 3.0 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|242398971|ref|YP_002994395.1| - 2.4e-11 43.7 1.1 7.1e-11 42.1 0.3 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|242398971|ref|YP_002994395.1| - 9e-11 41.9 1.8 6.3e-05 22.7 0.6 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|242398971|ref|YP_002994395.1| - 1.8e-07 30.7 0.5 0.00029 20.2 0.1 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|242398971|ref|YP_002994395.1| - 2.8e-07 29.8 0.2 0.00086 18.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.14 gi|242398971|ref|YP_002994395.1| - 4.6e-06 25.6 0.6 6.4e-05 21.8 0.3 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|242398971|ref|YP_002994395.1| - 1.6e-05 25.1 0.1 5.8e-05 23.2 0.1 2.1 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|242398971|ref|YP_002994395.1| - 0.00013 22.4 1.5 0.42 11.2 0.2 3.2 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|242398971|ref|YP_002994395.1| - 0.00048 19.4 0.5 0.0012 18.2 0.1 1.8 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|242398971|ref|YP_002994395.1| - 0.003 16.7 1.9 0.0041 16.3 0.5 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A GDI PF00996.18 gi|242398971|ref|YP_002994395.1| - 0.0034 16.0 0.0 0.038 12.5 0.0 2.0 2 0 0 2 2 2 1 GDP dissociation inhibitor 3HCDH_N PF02737.18 gi|242398971|ref|YP_002994395.1| - 0.01 15.7 1.0 0.018 14.9 0.2 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|242398971|ref|YP_002994395.1| - 0.077 13.3 1.0 0.2 11.9 0.2 2.2 2 0 0 2 2 2 0 TrkA-N domain DUF1188 PF06690.11 gi|242398971|ref|YP_002994395.1| - 0.085 12.4 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) SE PF08491.10 gi|242398971|ref|YP_002994395.1| - 0.11 11.5 0.0 0.25 10.3 0.0 1.5 1 0 0 1 1 1 0 Squalene epoxidase ApbA PF02558.16 gi|242398971|ref|YP_002994395.1| - 0.13 11.9 0.0 0.32 10.6 0.0 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Fer4 PF00037.27 gi|242398972|ref|YP_002994396.1| - 1.1e-15 56.7 12.5 7.1e-09 35.1 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|242398972|ref|YP_002994396.1| - 9.8e-13 48.5 31.6 1.9e-07 31.5 11.5 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|242398972|ref|YP_002994396.1| - 1.3e-11 44.1 11.4 5.8e-08 32.5 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|242398972|ref|YP_002994396.1| - 2.3e-10 39.9 10.1 4e-06 26.6 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|242398972|ref|YP_002994396.1| - 7.5e-10 38.8 21.8 1.4e-06 28.3 11.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|242398972|ref|YP_002994396.1| - 5.1e-09 36.1 8.9 8.4e-09 35.4 8.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|242398972|ref|YP_002994396.1| - 1.2e-08 35.8 8.2 0.00035 21.5 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|242398972|ref|YP_002994396.1| - 1.2e-08 35.0 19.5 1.2e-06 28.6 10.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|242398972|ref|YP_002994396.1| - 8.5e-05 22.8 12.9 0.0021 18.5 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|242398972|ref|YP_002994396.1| - 0.00027 21.3 12.6 0.035 14.5 3.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|242398972|ref|YP_002994396.1| - 0.00045 20.7 11.9 0.11 13.1 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|242398972|ref|YP_002994396.1| - 0.00071 20.1 12.5 0.044 14.3 2.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|242398972|ref|YP_002994396.1| - 0.0012 19.5 7.6 0.19 12.5 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|242398972|ref|YP_002994396.1| - 0.0017 18.5 8.8 0.0033 17.6 8.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|242398972|ref|YP_002994396.1| - 0.011 16.7 18.3 0.023 15.6 5.3 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Dynactin_p62 PF05502.13 gi|242398972|ref|YP_002994396.1| - 1.4 7.6 5.4 1.5 7.5 5.4 1.0 1 0 0 1 1 1 0 Dynactin p62 family Fer4_22 PF17179.4 gi|242398972|ref|YP_002994396.1| - 1.6 9.6 14.0 1.7 9.5 2.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain HTH_20 PF12840.7 gi|242398973|ref|YP_002994397.1| - 4.6e-11 42.6 0.0 1.5e-05 25.0 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|242398973|ref|YP_002994397.1| - 8.3e-07 28.8 3.2 7.5e-05 22.5 1.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|242398973|ref|YP_002994397.1| - 4.8e-05 22.8 0.5 0.018 14.6 0.1 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|242398973|ref|YP_002994397.1| - 0.00044 20.4 2.7 0.36 11.0 0.2 2.8 3 0 0 3 3 3 2 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|242398973|ref|YP_002994397.1| - 0.0023 17.9 3.5 0.59 10.1 0.1 2.6 2 0 0 2 2 2 2 HTH domain MarR PF01047.22 gi|242398973|ref|YP_002994397.1| - 0.0059 16.5 0.1 0.19 11.7 0.0 2.3 2 0 0 2 2 2 1 MarR family FUR PF01475.19 gi|242398973|ref|YP_002994397.1| - 0.0076 16.4 0.1 0.02 15.0 0.1 1.7 1 0 0 1 1 1 1 Ferric uptake regulator family MarR_2 PF12802.7 gi|242398973|ref|YP_002994397.1| - 0.0079 16.1 0.1 4.9 7.1 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_AsnC-type PF13404.6 gi|242398973|ref|YP_002994397.1| - 0.015 15.1 0.1 1.7 8.5 0.0 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain FliJ PF02050.16 gi|242398973|ref|YP_002994397.1| - 0.028 14.6 1.0 0.051 13.8 0.4 1.7 1 1 1 2 2 2 0 Flagellar FliJ protein PadR PF03551.14 gi|242398973|ref|YP_002994397.1| - 0.03 14.3 0.2 0.079 12.9 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Paf67 PF10255.9 gi|242398973|ref|YP_002994397.1| - 0.031 13.3 1.7 0.044 12.8 1.7 1.2 1 0 0 1 1 1 0 RNA polymerase I-associated factor PAF67 DHR10 PF18595.1 gi|242398973|ref|YP_002994397.1| - 0.034 14.2 1.0 0.034 14.2 1.0 2.0 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain SlyX PF04102.12 gi|242398973|ref|YP_002994397.1| - 0.05 14.2 2.6 1.9 9.1 0.3 2.4 2 0 0 2 2 2 0 SlyX PBECR5 PF18814.1 gi|242398973|ref|YP_002994397.1| - 0.07 13.1 2.5 0.099 12.6 2.5 1.2 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5 Phage_rep_O PF04492.13 gi|242398973|ref|YP_002994397.1| - 0.1 13.2 0.6 5.1 7.8 0.0 2.6 2 1 0 2 2 2 0 Bacteriophage replication protein O TrmB PF01978.19 gi|242398973|ref|YP_002994397.1| - 0.17 11.8 1.8 3.1 7.8 0.4 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PCI PF01399.27 gi|242398973|ref|YP_002994397.1| - 0.85 10.2 5.7 1 9.9 3.0 2.3 2 1 0 2 2 2 0 PCI domain Takusan PF04822.13 gi|242398973|ref|YP_002994397.1| - 5.4 7.0 8.4 0.57 10.1 1.0 2.9 2 1 1 3 3 3 0 Takusan Thioredoxin_3 PF13192.6 gi|242398974|ref|YP_002994398.1| - 6.7e-24 83.7 0.0 6e-15 55.0 0.0 2.4 2 1 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 gi|242398974|ref|YP_002994398.1| - 8.5e-13 48.2 0.1 5.3e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin ABC_transp_aux PF09822.9 gi|242398974|ref|YP_002994398.1| - 1.1e-12 48.1 0.0 2e-07 30.8 0.0 2.0 2 0 0 2 2 2 2 ABC-type uncharacterized transport system Glutaredoxin PF00462.24 gi|242398974|ref|YP_002994398.1| - 1e-10 41.7 4.9 2.2e-06 27.8 0.5 3.5 3 1 0 3 3 3 2 Glutaredoxin Thioredoxin_2 PF13098.6 gi|242398974|ref|YP_002994398.1| - 4.3e-10 40.0 6.0 0.0036 17.7 0.2 4.1 2 2 0 2 2 2 2 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|242398974|ref|YP_002994398.1| - 1.9e-07 30.9 0.0 0.00024 20.8 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin TraF PF13728.6 gi|242398974|ref|YP_002994398.1| - 5.8e-07 29.6 0.4 0.00077 19.3 0.0 2.9 2 2 0 2 2 2 2 F plasmid transfer operon protein DUF836 PF05768.14 gi|242398974|ref|YP_002994398.1| - 4.4e-06 27.0 1.2 0.00026 21.3 0.4 2.5 2 2 0 2 2 2 1 Glutaredoxin-like domain (DUF836) Thioredoxin_8 PF13905.6 gi|242398974|ref|YP_002994398.1| - 0.0028 17.9 0.3 13 6.2 0.0 3.5 3 1 0 3 3 3 0 Thioredoxin-like Thioredoxin_7 PF13899.6 gi|242398974|ref|YP_002994398.1| - 0.0035 17.5 0.1 0.3 11.3 0.0 2.4 2 0 0 2 2 2 1 Thioredoxin-like KaiB PF07689.12 gi|242398974|ref|YP_002994398.1| - 0.0059 16.3 0.0 1.3 8.8 0.0 2.4 2 0 0 2 2 2 1 KaiB domain AhpC-TSA PF00578.21 gi|242398974|ref|YP_002994398.1| - 0.037 14.0 0.3 7.2 6.6 0.0 3.0 3 1 1 4 4 4 0 AhpC/TSA family Syntaxin_2 PF14523.6 gi|242398974|ref|YP_002994398.1| - 0.13 12.7 0.0 3.5 8.0 0.0 2.1 2 0 0 2 2 2 0 Syntaxin-like protein HyaE PF07449.11 gi|242398974|ref|YP_002994398.1| - 0.15 12.0 0.0 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE TrbC_Ftype PF09673.10 gi|242398974|ref|YP_002994398.1| - 0.17 12.0 0.0 19 5.4 0.0 2.4 2 1 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein Amidohydro_1 PF01979.20 gi|242398975|ref|YP_002994399.1| - 1.6e-55 188.8 0.1 1.9e-55 188.5 0.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|242398975|ref|YP_002994399.1| - 3.4e-07 30.1 0.0 8.6e-05 22.2 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Yos1 PF08571.10 gi|242398976|ref|YP_002994400.1| - 0.017 15.3 1.0 0.033 14.5 0.3 1.7 2 0 0 2 2 2 0 Yos1-like tRNA-synt_2 PF00152.20 gi|242398977|ref|YP_002994401.1| - 9.8e-85 284.4 0.0 1.2e-84 284.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|242398977|ref|YP_002994401.1| - 2.8e-15 56.1 0.4 3.4e-14 52.6 0.6 2.2 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain NUDIX PF00293.28 gi|242398979|ref|YP_002994403.1| - 6.8e-18 65.0 0.3 8.5e-18 64.7 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain Na_Pi_cotrans PF02690.15 gi|242398980|ref|YP_002994404.1| - 0.065 13.3 2.7 0.078 13.1 2.7 1.1 1 0 0 1 1 1 0 Na+/Pi-cotransporter TatC PF00902.18 gi|242398980|ref|YP_002994404.1| - 0.089 12.6 2.1 0.1 12.4 2.1 1.2 1 0 0 1 1 1 0 Sec-independent protein translocase protein (TatC) DUF973 PF06157.11 gi|242398980|ref|YP_002994404.1| - 0.11 11.5 9.6 0.12 11.4 9.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) AP_endonuc_2 PF01261.24 gi|242398983|ref|YP_002994407.1| - 1.1e-05 24.9 0.0 0.00052 19.5 0.0 2.1 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel Amidohydro_1 PF01979.20 gi|242398983|ref|YP_002994407.1| - 0.15 11.4 0.0 0.23 10.7 0.0 1.4 2 0 0 2 2 2 0 Amidohydrolase family HycI PF01750.18 gi|242398984|ref|YP_002994408.1| - 2e-18 66.4 0.0 3.1e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease ParA PF10609.9 gi|242398985|ref|YP_002994409.1| - 1e-55 188.9 0.1 6.4e-55 186.3 0.1 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|242398985|ref|YP_002994409.1| - 3.6e-15 56.1 0.0 5.1e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|242398985|ref|YP_002994409.1| - 1.1e-11 44.9 0.7 3e-07 30.5 0.2 2.2 1 1 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|242398985|ref|YP_002994409.1| - 2.1e-07 30.5 5.4 2.2e-05 23.8 0.2 2.9 2 1 1 3 3 3 2 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|242398985|ref|YP_002994409.1| - 2e-06 27.5 0.1 0.027 13.9 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|242398985|ref|YP_002994409.1| - 2.4e-06 27.0 0.0 5.1e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|242398985|ref|YP_002994409.1| - 7.4e-06 25.9 2.0 0.017 14.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain NAD_Gly3P_dh_N PF01210.23 gi|242398985|ref|YP_002994409.1| - 0.039 13.9 0.1 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CLP1_P PF16575.5 gi|242398985|ref|YP_002994409.1| - 0.044 13.6 0.1 0.12 12.1 0.1 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Ribosomal_L7Ae PF01248.26 gi|242398985|ref|YP_002994409.1| - 0.049 13.4 0.2 0.11 12.3 0.2 1.5 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family MeaB PF03308.16 gi|242398985|ref|YP_002994409.1| - 0.095 11.7 0.2 0.14 11.2 0.2 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PDH PF02153.17 gi|242398985|ref|YP_002994409.1| - 0.13 11.2 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase HypA PF01155.19 gi|242398986|ref|YP_002994410.1| - 4.7e-28 97.4 0.4 5.4e-28 97.3 0.4 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|242398986|ref|YP_002994410.1| - 7.7e-05 22.1 0.4 0.025 14.1 0.1 2.4 2 0 0 2 2 2 1 TFIIB zinc-binding Trm112p PF03966.16 gi|242398986|ref|YP_002994410.1| - 0.0012 19.3 0.1 0.17 12.4 0.0 2.2 2 0 0 2 2 2 1 Trm112p-like protein Zn_Tnp_IS1595 PF12760.7 gi|242398986|ref|YP_002994410.1| - 0.0012 18.7 0.1 0.54 10.3 0.0 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DUF2318 PF10080.9 gi|242398986|ref|YP_002994410.1| - 0.0035 17.4 0.1 0.14 12.3 0.0 2.3 2 0 0 2 2 2 1 Predicted membrane protein (DUF2318) zf-ISL3 PF14690.6 gi|242398986|ref|YP_002994410.1| - 0.0087 16.7 0.2 3 8.6 0.1 2.4 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.13 gi|242398986|ref|YP_002994410.1| - 0.013 15.1 0.2 2.8 7.7 0.0 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|242398986|ref|YP_002994410.1| - 0.014 14.8 1.2 1 8.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|242398986|ref|YP_002994410.1| - 0.016 15.1 3.4 0.74 9.7 1.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) KGK PF08872.10 gi|242398986|ref|YP_002994410.1| - 0.025 15.0 2.0 0.042 14.3 1.9 1.5 1 1 0 1 1 1 0 KGK domain zf-ZPR1 PF03367.13 gi|242398986|ref|YP_002994410.1| - 0.026 14.4 1.5 0.081 12.8 0.8 2.1 1 1 1 2 2 2 0 ZPR1 zinc-finger domain zinc_ribbon_2 PF13240.6 gi|242398986|ref|YP_002994410.1| - 0.028 14.1 4.1 3 7.7 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain MCM_OB PF17207.3 gi|242398986|ref|YP_002994410.1| - 0.029 14.2 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 MCM OB domain PhnA_Zn_Ribbon PF08274.12 gi|242398986|ref|YP_002994410.1| - 0.033 14.1 1.0 0.73 9.8 1.0 2.4 1 1 1 2 2 2 0 PhnA Zinc-Ribbon Lar_restr_allev PF14354.6 gi|242398986|ref|YP_002994410.1| - 0.036 14.5 0.1 2.7 8.4 0.0 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|242398986|ref|YP_002994410.1| - 0.036 14.2 4.5 1.2 9.3 4.6 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|242398986|ref|YP_002994410.1| - 0.041 13.8 0.8 3.3 7.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|242398986|ref|YP_002994410.1| - 0.044 13.7 0.2 3.9 7.5 0.0 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.12 gi|242398986|ref|YP_002994410.1| - 0.048 13.9 1.3 0.21 11.9 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-HYPF PF07503.12 gi|242398986|ref|YP_002994410.1| - 0.06 13.1 1.1 0.67 9.8 0.1 2.2 2 0 0 2 2 2 0 HypF finger zf-3CxxC PF13695.6 gi|242398986|ref|YP_002994410.1| - 0.082 13.4 0.7 0.18 12.3 0.7 1.6 1 1 0 1 1 1 0 Zinc-binding domain eIF-5_eIF-2B PF01873.17 gi|242398986|ref|YP_002994410.1| - 0.092 12.6 0.7 0.97 9.3 0.0 2.2 2 1 0 2 2 2 0 Domain found in IF2B/IF5 DpnI PF06044.12 gi|242398986|ref|YP_002994410.1| - 0.096 12.3 1.9 0.31 10.7 0.3 2.1 1 1 1 2 2 2 0 Dam-replacing family DUF1610 PF07754.11 gi|242398986|ref|YP_002994410.1| - 0.097 12.7 5.1 0.79 9.7 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-RRN7 PF11781.8 gi|242398986|ref|YP_002994410.1| - 0.16 11.7 4.8 0.6 9.9 0.2 2.5 3 0 0 3 3 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF35_N PF12172.8 gi|242398986|ref|YP_002994410.1| - 0.2 11.6 4.2 0.3 11.0 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Sgf11 PF08209.11 gi|242398986|ref|YP_002994410.1| - 0.42 10.2 2.7 14 5.4 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Rubredoxin_2 PF18073.1 gi|242398986|ref|YP_002994410.1| - 5.2 6.9 6.8 8.5 6.2 0.7 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Aminotran_3 PF00202.21 gi|242398987|ref|YP_002994411.1| - 2.8e-97 326.0 0.0 3.4e-97 325.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III SPASM PF13186.6 gi|242398988|ref|YP_002994412.1| - 2.6e-17 63.1 0.4 8.1e-17 61.5 0.4 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|242398988|ref|YP_002994412.1| - 1.9e-15 57.6 0.1 2.8e-15 57.1 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|242398988|ref|YP_002994412.1| - 8.3e-09 35.6 0.0 1.9e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|242398988|ref|YP_002994412.1| - 1.8e-07 31.5 0.3 2.5e-06 27.8 0.0 2.5 3 0 0 3 3 3 1 4Fe-4S single cluster domain ThiS PF02597.20 gi|242398989|ref|YP_002994413.1| - 3e-21 75.9 0.2 3.3e-21 75.7 0.2 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|242398989|ref|YP_002994413.1| - 0.0009 19.5 0.2 0.0011 19.2 0.2 1.4 1 1 0 1 1 1 1 Urm1 (Ubiquitin related modifier) DUF348 PF03990.14 gi|242398989|ref|YP_002994413.1| - 0.0023 17.6 1.0 0.87 9.4 0.0 2.8 2 1 1 3 3 3 2 G5-linked-Ubiquitin-like domain Transposase_mut PF00872.18 gi|242398989|ref|YP_002994413.1| - 0.0031 16.4 0.1 0.0066 15.3 0.1 1.6 1 1 0 1 1 1 1 Transposase, Mutator family IL1_propep PF02394.16 gi|242398989|ref|YP_002994413.1| - 0.043 14.7 0.0 0.049 14.6 0.0 1.1 1 0 0 1 1 1 0 Interleukin-1 propeptide AFOR_C PF01314.18 gi|242398990|ref|YP_002994414.1| - 3e-149 497.2 0.0 3.7e-149 496.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|242398990|ref|YP_002994414.1| - 6.2e-89 297.1 0.1 9e-89 296.6 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain NTP_transf_3 PF12804.7 gi|242398991|ref|YP_002994415.1| - 3.5e-15 56.7 0.0 5.7e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|242398991|ref|YP_002994415.1| - 2.6e-14 53.4 0.0 8.5e-12 45.2 0.0 2.1 2 0 0 2 2 2 2 Nucleotidyl transferase CDP-OH_P_transf PF01066.21 gi|242398991|ref|YP_002994415.1| - 6.9e-09 36.4 1.1 2.8e-08 34.4 0.1 2.4 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase IspD PF01128.19 gi|242398991|ref|YP_002994415.1| - 3.7e-06 26.8 0.0 5.6e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Propep_M14 PF02244.16 gi|242398991|ref|YP_002994415.1| - 0.024 15.0 0.0 0.06 13.7 0.0 1.6 1 0 0 1 1 1 0 Carboxypeptidase activation peptide HTH_56 PF18662.1 gi|242398991|ref|YP_002994415.1| - 0.097 12.7 0.9 0.78 9.8 0.1 2.2 2 0 0 2 2 2 0 Cch helix turn helix domain Voltage_CLC PF00654.20 gi|242398991|ref|YP_002994415.1| - 0.21 10.8 3.3 0.26 10.5 2.5 1.5 1 1 1 2 2 2 0 Voltage gated chloride channel Peptidase_M32 PF02074.15 gi|242398992|ref|YP_002994416.1| - 2.2e-169 564.3 0.0 2.5e-169 564.2 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Peptidase_M3 PF01432.20 gi|242398992|ref|YP_002994416.1| - 0.49 9.6 3.0 4.9 6.3 0.3 2.8 3 0 0 3 3 3 0 Peptidase family M3 ASCH PF04266.14 gi|242398993|ref|YP_002994417.1| - 1.9e-16 60.6 0.9 2.3e-16 60.3 0.9 1.0 1 0 0 1 1 1 1 ASCH domain S4_2 PF13275.6 gi|242398993|ref|YP_002994417.1| - 0.0058 16.4 0.5 0.009 15.8 0.5 1.3 1 0 0 1 1 1 1 S4 domain FAD_binding_3 PF01494.19 gi|242398994|ref|YP_002994418.1| - 4.3e-17 62.4 0.0 3.2e-13 49.7 0.0 3.0 2 1 0 2 2 2 2 FAD binding domain Thi4 PF01946.17 gi|242398994|ref|YP_002994418.1| - 3e-06 26.6 0.1 6e-06 25.7 0.1 1.5 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.14 gi|242398994|ref|YP_002994418.1| - 3.9e-06 26.0 0.2 0.092 11.6 0.0 3.0 3 0 0 3 3 3 3 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|242398994|ref|YP_002994418.1| - 1.2e-05 25.4 0.1 6.2e-05 23.2 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|242398994|ref|YP_002994418.1| - 4e-05 23.4 0.2 0.023 14.3 0.1 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|242398994|ref|YP_002994418.1| - 0.00044 19.1 0.1 0.00096 18.0 0.1 1.5 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|242398994|ref|YP_002994418.1| - 0.0018 17.4 0.1 0.016 14.3 0.0 2.2 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|242398994|ref|YP_002994418.1| - 0.0053 16.0 0.8 0.13 11.5 0.2 2.3 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase VAPB_antitox PF02697.14 gi|242398994|ref|YP_002994418.1| - 0.027 15.2 0.4 0.071 13.9 0.4 1.7 1 0 0 1 1 1 0 Putative antitoxin TrkA_N PF02254.18 gi|242398994|ref|YP_002994418.1| - 0.12 12.6 0.3 0.43 10.8 0.0 2.0 3 0 0 3 3 3 0 TrkA-N domain Peptidase_C15 PF01470.17 gi|242398995|ref|YP_002994419.1| - 2.4e-74 249.9 0.9 2.7e-74 249.7 0.9 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Peptidase_C3 PF00548.20 gi|242398995|ref|YP_002994419.1| - 0.0094 15.9 0.8 0.041 13.8 0.1 1.9 2 0 0 2 2 2 1 3C cysteine protease (picornain 3C) Thump_like PF18096.1 gi|242398995|ref|YP_002994419.1| - 0.013 15.4 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 THUMP domain-like tRNA-synt_2b PF00587.25 gi|242398996|ref|YP_002994420.1| - 5.9e-22 78.5 0.0 1.2e-21 77.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|242398996|ref|YP_002994420.1| - 1.6e-21 76.2 0.3 3.5e-21 75.2 0.3 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|242398996|ref|YP_002994420.1| - 2.4e-14 53.3 0.9 5.6e-14 52.1 0.7 1.8 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal ProRS-C_2 PF09181.10 gi|242398996|ref|YP_002994420.1| - 0.0045 17.1 0.3 0.042 14.0 0.1 2.5 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal TIR_2 PF13676.6 gi|242398996|ref|YP_002994420.1| - 0.076 13.6 0.0 0.19 12.3 0.0 1.7 1 0 0 1 1 1 0 TIR domain 2-Hacid_dh_C PF02826.19 gi|242398997|ref|YP_002994421.1| - 1.3e-51 174.5 0.0 1.9e-51 174.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|242398997|ref|YP_002994421.1| - 1.8e-30 105.3 0.1 2.2e-30 105.0 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|242398997|ref|YP_002994421.1| - 1e-08 35.5 0.0 2.1e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|242398997|ref|YP_002994421.1| - 1.7e-08 34.9 0.0 3.5e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|242398997|ref|YP_002994421.1| - 2.1e-06 27.4 0.1 5.8e-06 26.0 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|242398997|ref|YP_002994421.1| - 0.00018 21.6 0.0 0.00077 19.5 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|242398997|ref|YP_002994421.1| - 0.0017 18.3 0.3 0.02 14.9 0.3 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AdoHcyase_NAD PF00670.21 gi|242398997|ref|YP_002994421.1| - 0.0076 16.3 0.1 0.038 14.1 0.1 2.1 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|242398997|ref|YP_002994421.1| - 0.02 14.6 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.9 gi|242398997|ref|YP_002994421.1| - 0.046 13.6 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain NAD_binding_7 PF13241.6 gi|242398997|ref|YP_002994421.1| - 0.047 14.1 0.0 0.25 11.8 0.0 2.1 2 1 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|242398998|ref|YP_002994422.1| - 1.8e-70 235.9 0.0 4.5e-70 234.6 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|242398998|ref|YP_002994422.1| - 7.7e-38 129.2 0.3 8.8e-38 129.0 0.3 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.12 gi|242398998|ref|YP_002994422.1| - 1.7e-06 27.7 0.3 1.2e-05 25.0 0.0 2.3 2 1 0 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|242398998|ref|YP_002994422.1| - 1e-05 25.8 0.2 8.4e-05 22.8 0.0 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|242398998|ref|YP_002994422.1| - 0.00061 19.1 0.0 0.0017 17.7 0.0 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.13 gi|242398998|ref|YP_002994422.1| - 0.0029 17.2 0.1 0.0067 16.0 0.1 1.6 1 0 0 1 1 1 1 NmrA-like family AdoHcyase_NAD PF00670.21 gi|242398998|ref|YP_002994422.1| - 0.015 15.3 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XdhC_C PF13478.6 gi|242398998|ref|YP_002994422.1| - 0.11 13.1 0.0 0.26 11.8 0.0 1.7 1 0 0 1 1 1 0 XdhC Rossmann domain PhoU_div PF01865.16 gi|242398999|ref|YP_002994423.1| - 1.3e-45 155.3 5.1 1.5e-45 155.2 5.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|242398999|ref|YP_002994423.1| - 0.0011 19.4 8.2 0.26 11.8 1.7 2.5 2 1 0 2 2 2 2 PhoU domain DUF3182 PF11379.8 gi|242398999|ref|YP_002994423.1| - 0.091 11.7 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3182) LUC7 PF03194.15 gi|242398999|ref|YP_002994423.1| - 0.11 12.1 0.9 0.21 11.2 0.9 1.6 1 1 0 1 1 1 0 LUC7 N_terminus Rnk_N PF14760.6 gi|242398999|ref|YP_002994423.1| - 0.52 10.8 4.0 0.86 10.1 0.2 2.8 2 1 0 2 2 2 0 Rnk N-terminus ApbA_C PF08546.11 gi|242399000|ref|YP_002994424.1| - 2.1e-35 121.6 0.2 4.1e-35 120.7 0.2 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|242399000|ref|YP_002994424.1| - 1.5e-34 118.8 0.0 3.6e-34 117.6 0.0 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|242399000|ref|YP_002994424.1| - 0.00069 19.6 0.0 0.0026 17.8 0.0 1.9 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|242399000|ref|YP_002994424.1| - 0.00081 19.0 0.6 0.0013 18.4 0.1 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|242399000|ref|YP_002994424.1| - 0.008 16.4 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|242399000|ref|YP_002994424.1| - 0.049 13.0 0.1 0.08 12.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|242399000|ref|YP_002994424.1| - 0.057 14.0 0.1 0.19 12.3 0.1 2.0 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|242399000|ref|YP_002994424.1| - 0.078 13.2 0.0 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox PF00070.27 gi|242399000|ref|YP_002994424.1| - 0.16 12.5 0.3 0.16 12.5 0.3 2.4 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|242399000|ref|YP_002994424.1| - 0.2 10.8 0.1 0.37 10.0 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain SpoU_methylase PF00588.19 gi|242399001|ref|YP_002994425.1| - 1.5e-36 125.7 0.0 2.2e-36 125.1 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family ELMO_CED12 PF04727.13 gi|242399001|ref|YP_002994425.1| - 0.12 12.4 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 ELMO/CED-12 family DNA_binding_1 PF01035.20 gi|242399002|ref|YP_002994426.1| - 3.1e-25 88.1 0.0 4.3e-25 87.6 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF1938 PF09153.10 gi|242399002|ref|YP_002994426.1| - 1.1e-20 73.5 1.2 1e-19 70.4 0.7 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF1938) EPSP_synthase PF00275.20 gi|242399002|ref|YP_002994426.1| - 0.2 10.3 0.0 0.26 9.9 0.0 1.1 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TPR_6 PF13174.6 gi|242399003|ref|YP_002994427.1| - 1.4e-09 38.0 29.5 0.08 13.6 0.4 7.2 5 2 1 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|242399003|ref|YP_002994427.1| - 1e-08 34.6 48.9 0.0015 18.5 2.4 8.5 5 3 3 8 8 8 5 Tetratricopeptide repeat TPR_15 PF13429.6 gi|242399003|ref|YP_002994427.1| - 6.1e-08 32.2 16.0 9.2e-07 28.3 15.3 3.1 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|242399003|ref|YP_002994427.1| - 9.4e-07 28.6 43.9 0.0054 16.8 1.0 7.0 6 1 1 7 7 7 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|242399003|ref|YP_002994427.1| - 2e-05 24.2 35.5 0.037 13.8 0.6 7.0 6 2 2 8 8 8 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|242399003|ref|YP_002994427.1| - 9e-05 22.2 24.7 0.039 14.0 1.2 7.2 5 2 2 7 7 7 2 Tetratricopeptide repeat SNAP PF14938.6 gi|242399003|ref|YP_002994427.1| - 0.00016 21.2 29.1 0.00016 21.2 29.1 2.4 1 1 1 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_16 PF13432.6 gi|242399003|ref|YP_002994427.1| - 0.00031 21.3 20.5 3.2 8.5 0.7 5.9 3 3 3 6 6 6 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|242399003|ref|YP_002994427.1| - 0.0018 18.9 17.7 2.1 9.4 0.2 5.8 2 1 4 6 6 6 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|242399003|ref|YP_002994427.1| - 0.0031 17.8 23.3 0.075 13.3 1.5 4.9 2 1 4 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|242399003|ref|YP_002994427.1| - 0.0085 16.6 18.0 0.14 12.7 1.0 4.2 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|242399003|ref|YP_002994427.1| - 0.014 15.6 2.0 10 6.3 0.4 4.4 2 1 1 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|242399003|ref|YP_002994427.1| - 0.041 13.8 8.2 0.11 12.4 1.5 3.8 2 1 1 3 3 3 0 Tetratricopeptide repeat Clathrin PF00637.20 gi|242399003|ref|YP_002994427.1| - 0.043 13.7 14.8 0.044 13.6 2.3 3.6 1 1 2 3 3 3 0 Region in Clathrin and VPS DUF883 PF05957.13 gi|242399003|ref|YP_002994427.1| - 5.5 7.7 5.5 20 5.9 0.7 3.4 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) NAC PF01849.18 gi|242399004|ref|YP_002994428.1| - 2.7e-14 52.9 4.5 4.7e-14 52.1 4.5 1.4 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|242399004|ref|YP_002994428.1| - 0.0032 17.3 0.0 0.0047 16.7 0.0 1.3 1 0 0 1 1 1 1 UBA-like domain TAP_C PF03943.13 gi|242399004|ref|YP_002994428.1| - 0.011 15.4 0.2 0.037 13.7 0.0 2.0 3 0 0 3 3 3 0 TAP C-terminal domain DUF2089 PF09862.9 gi|242399004|ref|YP_002994428.1| - 0.013 15.5 2.0 2.2 8.3 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) HOIP-UBA PF16678.5 gi|242399004|ref|YP_002994428.1| - 0.021 14.9 0.7 0.037 14.0 0.3 1.7 1 1 0 1 1 1 0 HOIP UBA domain pair CUE PF02845.16 gi|242399004|ref|YP_002994428.1| - 0.022 14.4 0.0 0.41 10.4 0.0 2.4 1 1 1 2 2 2 0 CUE domain RTC4 PF14474.6 gi|242399004|ref|YP_002994428.1| - 0.044 13.9 0.2 0.07 13.3 0.2 1.5 1 1 0 1 1 1 0 RTC4-like domain DUF3389 PF11869.8 gi|242399004|ref|YP_002994428.1| - 0.15 12.2 1.5 12 6.2 0.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3389) PhageMin_Tail PF10145.9 gi|242399004|ref|YP_002994428.1| - 0.18 11.6 2.4 0.72 9.7 2.4 2.0 1 1 0 1 1 1 0 Phage-related minor tail protein PBD PF00786.28 gi|242399004|ref|YP_002994428.1| - 0.22 11.9 0.1 0.66 10.4 0.1 1.8 2 0 0 2 2 2 0 P21-Rho-binding domain GTP-bdg_N PF13167.6 gi|242399005|ref|YP_002994429.1| - 1.8e-21 76.6 0.4 8.2e-21 74.5 0.1 2.3 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|242399005|ref|YP_002994429.1| - 1.8e-20 73.1 0.3 6.4e-20 71.3 0.1 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|242399005|ref|YP_002994429.1| - 2.1e-19 69.9 5.5 4.5e-19 68.8 5.5 1.6 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 gi|242399005|ref|YP_002994429.1| - 7.5e-09 35.3 0.4 1.5e-08 34.4 0.4 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|242399005|ref|YP_002994429.1| - 1.4e-07 31.5 3.5 0.00048 20.1 0.1 2.7 3 0 0 3 3 3 2 RsgA GTPase GTP_EFTU PF00009.27 gi|242399005|ref|YP_002994429.1| - 3.1e-06 26.9 0.2 0.00016 21.2 0.2 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|242399005|ref|YP_002994429.1| - 3.7e-05 23.4 0.0 9.3e-05 22.1 0.0 1.7 1 1 0 1 1 1 1 Ras family Arf PF00025.21 gi|242399005|ref|YP_002994429.1| - 5.3e-05 22.7 3.6 0.00012 21.5 2.9 2.0 1 1 0 1 1 1 1 ADP-ribosylation factor family Dynamin_N PF00350.23 gi|242399005|ref|YP_002994429.1| - 5.4e-05 23.3 0.8 0.016 15.3 0.0 2.9 2 1 1 3 3 3 1 Dynamin family PduV-EutP PF10662.9 gi|242399005|ref|YP_002994429.1| - 0.00093 19.0 1.6 0.13 12.0 1.0 2.9 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|242399005|ref|YP_002994429.1| - 0.0023 18.2 0.2 0.013 15.7 0.2 2.2 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Spore_IV_A PF09547.10 gi|242399005|ref|YP_002994429.1| - 0.0034 16.4 1.6 0.0068 15.4 0.4 1.9 2 0 0 2 2 2 1 Stage IV sporulation protein A (spore_IV_A) Septin PF00735.18 gi|242399005|ref|YP_002994429.1| - 0.017 14.4 5.6 0.37 10.0 0.2 2.3 2 0 0 2 2 2 0 Septin cobW PF02492.19 gi|242399005|ref|YP_002994429.1| - 0.017 14.7 3.6 2.2 7.8 0.1 2.9 2 1 1 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|242399005|ref|YP_002994429.1| - 0.021 15.3 0.2 0.057 13.9 0.2 1.9 1 1 0 1 1 1 0 ABC transporter CLP1_P PF16575.5 gi|242399005|ref|YP_002994429.1| - 0.027 14.2 0.2 0.88 9.3 0.1 2.7 2 1 1 3 3 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ATP_bind_1 PF03029.17 gi|242399005|ref|YP_002994429.1| - 0.072 12.9 0.8 0.57 9.9 0.1 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein APG17 PF04108.12 gi|242399005|ref|YP_002994429.1| - 2.2 7.3 5.9 21 4.1 5.7 2.6 1 1 0 1 1 1 0 Autophagy protein Apg17 RNA_binding PF01877.17 gi|242399006|ref|YP_002994430.1| - 9.2e-17 61.4 0.2 1.5e-16 60.7 0.2 1.3 1 1 0 1 1 1 1 RNA binding ACOX PF01756.19 gi|242399006|ref|YP_002994430.1| - 0.06 12.9 0.0 0.16 11.5 0.0 1.6 1 1 1 2 2 2 0 Acyl-CoA oxidase Peptidase_M24 PF00557.24 gi|242399007|ref|YP_002994431.1| - 2.1e-69 233.4 1.0 3.1e-69 232.8 1.0 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|242399007|ref|YP_002994431.1| - 2e-19 70.6 0.0 3.3e-19 69.8 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Anticodon_1 PF08264.13 gi|242399007|ref|YP_002994431.1| - 0.12 12.4 1.0 0.32 10.9 0.7 1.9 2 0 0 2 2 2 0 Anticodon-binding domain of tRNA Radical_SAM PF04055.21 gi|242399008|ref|YP_002994432.1| - 9.2e-27 94.5 0.7 5.6e-25 88.6 0.1 2.7 2 1 1 3 3 3 1 Radical SAM superfamily UPF0004 PF00919.20 gi|242399008|ref|YP_002994432.1| - 4.6e-20 71.5 0.0 9.7e-20 70.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|242399008|ref|YP_002994432.1| - 2.5e-11 43.4 0.3 8.9e-11 41.6 0.2 2.1 2 0 0 2 2 2 1 TRAM domain TRAM_2 PF18693.1 gi|242399008|ref|YP_002994432.1| - 0.015 15.4 0.3 0.17 12.1 0.3 2.4 1 1 0 1 1 1 0 TRAM domain Sensor PF13796.6 gi|242399009|ref|YP_002994433.1| - 0.016 15.3 9.9 0.017 15.2 9.9 1.0 1 0 0 1 1 1 0 Putative sensor DUF4131 PF13567.6 gi|242399009|ref|YP_002994433.1| - 0.16 11.6 5.1 0.17 11.5 5.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF818 PF05677.12 gi|242399009|ref|YP_002994433.1| - 0.29 10.1 2.8 0.35 9.8 2.8 1.0 1 0 0 1 1 1 0 Chlamydia CHLPS protein (DUF818) TMEM238 PF15125.6 gi|242399009|ref|YP_002994433.1| - 0.61 10.3 9.9 0.81 9.9 9.9 1.2 1 0 0 1 1 1 0 TMEM238 protein family DUF2976 PF11190.8 gi|242399009|ref|YP_002994433.1| - 0.81 9.5 8.9 2.1 8.2 8.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2976) RseC_MucC PF04246.12 gi|242399009|ref|YP_002994433.1| - 2.7 8.0 5.9 3.1 7.8 5.9 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Apq12 PF12716.7 gi|242399009|ref|YP_002994433.1| - 3 7.8 13.7 3.9 7.5 13.7 1.2 1 0 0 1 1 1 0 Nuclear pore assembly and biogenesis FixS PF03597.15 gi|242399009|ref|YP_002994433.1| - 3.5 7.4 15.7 1.2 8.9 4.7 2.2 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type FixQ PF05545.11 gi|242399009|ref|YP_002994433.1| - 4.4 7.3 10.7 0.54 10.3 0.7 2.4 1 1 1 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Lactamase_B_2 PF12706.7 gi|242399010|ref|YP_002994434.1| - 0.00013 21.6 0.0 0.00019 21.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|242399010|ref|YP_002994434.1| - 0.00025 21.0 0.0 0.00053 19.9 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DIRP PF06584.13 gi|242399010|ref|YP_002994434.1| - 0.002 18.3 0.0 2.5 8.3 0.1 2.5 2 0 0 2 2 2 2 DIRP Lactamase_B PF00753.27 gi|242399010|ref|YP_002994434.1| - 0.026 14.5 0.0 0.064 13.2 0.0 1.7 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily CAP18_C PF12153.8 gi|242399010|ref|YP_002994434.1| - 0.8 9.6 4.1 8 6.4 0.2 2.7 2 0 0 2 2 2 0 LPS binding domain of CAP18 (C terminal) DUF835 PF05763.12 gi|242399011|ref|YP_002994435.1| - 9.4e-32 109.6 0.0 1.4e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) MerC PF03203.14 gi|242399011|ref|YP_002994435.1| - 0.21 12.1 8.0 1.2 9.6 0.8 2.4 2 0 0 2 2 2 0 MerC mercury resistance protein BaxI_1 PF12811.7 gi|242399011|ref|YP_002994435.1| - 0.63 9.6 9.8 0.81 9.2 8.9 1.6 1 1 0 1 1 1 0 Bax inhibitor 1 like YwiC PF14256.6 gi|242399011|ref|YP_002994435.1| - 1.8 8.9 14.0 0.45 10.8 4.9 2.4 2 0 0 2 2 2 0 YwiC-like protein DUF1453 PF07301.11 gi|242399011|ref|YP_002994435.1| - 4.4 7.3 14.6 1.9 8.5 4.2 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1453) Ilm1 PF10311.9 gi|242399011|ref|YP_002994435.1| - 5.9 6.5 7.9 2.8 7.6 0.9 2.5 2 1 1 3 3 3 0 Increased loss of mitochondrial DNA protein 1 Herpes_LMP1 PF05297.11 gi|242399011|ref|YP_002994435.1| - 9.8 5.3 8.2 16 4.5 8.2 1.3 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DcpS_C PF11969.8 gi|242399013|ref|YP_002994437.1| - 0.019 15.5 0.6 0.14 12.6 0.1 2.5 2 1 1 3 3 3 0 Scavenger mRNA decapping enzyme C-term binding PHD_like PF12910.7 gi|242399013|ref|YP_002994437.1| - 0.031 14.3 0.1 0.099 12.7 0.0 1.9 2 0 0 2 2 2 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system Cauli_AT PF03233.13 gi|242399013|ref|YP_002994437.1| - 0.09 12.7 1.6 0.99 9.3 0.2 2.8 3 1 0 3 3 3 0 Aphid transmission protein DUF5076 PF16826.5 gi|242399013|ref|YP_002994437.1| - 0.15 12.0 0.3 1.3 9.0 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF5076) DUF5395 PF17373.2 gi|242399013|ref|YP_002994437.1| - 0.24 12.1 2.9 10 6.8 0.1 3.5 3 1 1 4 4 4 0 Family of unknown function (DUF5395) A2M PF00207.22 gi|242399015|ref|YP_002994439.1| - 0.027 14.3 0.0 0.051 13.4 0.0 1.4 1 0 0 1 1 1 0 Alpha-2-macroglobulin family GreA_GreB PF01272.19 gi|242399015|ref|YP_002994439.1| - 0.13 12.2 0.2 0.56 10.2 0.0 2.0 2 0 0 2 2 2 0 Transcription elongation factor, GreA/GreB, C-term DUF2070 PF09843.9 gi|242399016|ref|YP_002994440.1| - 1.7 6.9 11.1 1.8 6.8 11.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Tetraspanin PF00335.20 gi|242399017|ref|YP_002994441.1| - 0.0025 17.6 0.9 0.0036 17.0 0.9 1.2 1 0 0 1 1 1 1 Tetraspanin family BCLP PF12304.8 gi|242399017|ref|YP_002994441.1| - 0.0025 17.4 1.3 0.004 16.7 1.3 1.3 1 0 0 1 1 1 1 Beta-casein like protein Phage_holin_3_6 PF07332.11 gi|242399017|ref|YP_002994441.1| - 0.0029 17.6 2.1 0.0051 16.8 2.1 1.4 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III SSF PF00474.17 gi|242399017|ref|YP_002994441.1| - 0.02 13.8 2.7 0.027 13.3 2.7 1.1 1 0 0 1 1 1 0 Sodium:solute symporter family DUF2975 PF11188.8 gi|242399017|ref|YP_002994441.1| - 0.053 13.4 3.8 0.086 12.7 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF3990 PF13151.6 gi|242399017|ref|YP_002994441.1| - 0.062 13.0 0.3 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3990) STE3 PF02076.15 gi|242399017|ref|YP_002994441.1| - 0.091 12.0 0.2 0.12 11.5 0.2 1.2 1 0 0 1 1 1 0 Pheromone A receptor REC1 PF18501.1 gi|242399017|ref|YP_002994441.1| - 0.5 10.2 7.2 0.12 12.3 3.3 1.8 2 0 0 2 2 2 0 Alpha helical recognition lobe domain DASH_Dad4 PF08650.10 gi|242399017|ref|YP_002994441.1| - 0.83 9.7 5.0 0.29 11.1 1.3 2.1 2 0 0 2 2 2 0 DASH complex subunit Dad4 EF-G-binding_N PF07299.11 gi|242399017|ref|YP_002994441.1| - 3.1 8.4 8.3 1.9 9.1 2.1 2.3 2 0 0 2 2 2 0 Elongation factor G-binding protein, N-terminal GAT PF03127.14 gi|242399018|ref|YP_002994442.1| - 0.056 13.7 1.2 0.17 12.2 0.4 2.0 2 0 0 2 2 2 0 GAT domain SKA2 PF16740.5 gi|242399018|ref|YP_002994442.1| - 0.063 13.1 1.7 0.62 9.9 0.3 2.2 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 2 FlgN PF05130.12 gi|242399018|ref|YP_002994442.1| - 0.068 13.7 6.0 2.5 8.6 1.3 2.1 2 0 0 2 2 2 0 FlgN protein DcuC PF03606.15 gi|242399018|ref|YP_002994442.1| - 0.24 9.8 0.0 0.31 9.5 0.0 1.1 1 0 0 1 1 1 0 C4-dicarboxylate anaerobic carrier DUF257 PF03192.13 gi|242399019|ref|YP_002994443.1| - 1.3e-38 132.9 4.7 1.4e-38 132.8 4.7 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 EII-Sor PF03609.14 gi|242399020|ref|YP_002994444.1| - 0.025 14.0 1.3 0.026 13.9 1.3 1.1 1 0 0 1 1 1 0 PTS system sorbose-specific iic component DEAD PF00270.29 gi|242399022|ref|YP_002994446.1| - 1.4e-48 165.0 0.0 3.2e-48 163.8 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|242399022|ref|YP_002994446.1| - 3.8e-34 117.4 0.2 6.7e-31 106.9 0.1 3.4 2 1 1 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|242399022|ref|YP_002994446.1| - 3.5e-09 36.9 0.0 6.6e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CMS1 PF14617.6 gi|242399022|ref|YP_002994446.1| - 0.0042 16.5 0.0 0.0089 15.4 0.0 1.6 1 0 0 1 1 1 1 U3-containing 90S pre-ribosomal complex subunit UTP25 PF06862.12 gi|242399022|ref|YP_002994446.1| - 0.025 13.4 0.0 0.24 10.1 0.0 2.0 2 0 0 2 2 2 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 ERCC3_RAD25_C PF16203.5 gi|242399022|ref|YP_002994446.1| - 0.025 13.8 0.0 0.039 13.2 0.0 1.2 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase SMC_N PF02463.19 gi|242399022|ref|YP_002994446.1| - 0.048 13.1 0.1 2.2 7.7 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Metallophos PF00149.28 gi|242399023|ref|YP_002994447.1| - 1.9e-12 48.1 1.5 4.5e-12 46.9 1.5 1.7 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|242399023|ref|YP_002994447.1| - 1.8e-05 25.0 0.0 3.4e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF1833 PF08875.11 gi|242399023|ref|YP_002994447.1| - 0.052 13.1 0.0 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1833) Shisa PF13908.6 gi|242399023|ref|YP_002994447.1| - 0.075 13.3 4.1 0.12 12.6 4.1 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator DUF515 PF04415.12 gi|242399023|ref|YP_002994447.1| - 1.2 7.5 10.6 1.8 6.8 10.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Med13_C PF06333.12 gi|242399023|ref|YP_002994447.1| - 4.3 6.5 9.2 6.7 5.9 9.2 1.2 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain MGC-24 PF05283.11 gi|242399023|ref|YP_002994447.1| - 5.5 7.4 13.5 8.7 6.8 13.5 1.2 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin PHO4 PF01384.20 gi|242399024|ref|YP_002994448.1| - 2.5e-110 368.7 37.5 3.1e-110 368.4 37.5 1.1 1 0 0 1 1 1 1 Phosphate transporter family Ytca PF17090.5 gi|242399024|ref|YP_002994448.1| - 0.0019 18.7 3.5 0.04 14.4 0.0 3.8 3 0 0 3 3 3 1 Uncharacterised protein family SieB PF14163.6 gi|242399024|ref|YP_002994448.1| - 0.084 12.4 1.0 0.29 10.6 1.0 1.9 1 0 0 1 1 1 0 Super-infection exclusion protein B INSIG PF07281.12 gi|242399024|ref|YP_002994448.1| - 0.089 12.4 5.8 1.6 8.3 0.1 3.0 1 1 1 2 2 2 0 Insulin-induced protein (INSIG) PhoU_div PF01865.16 gi|242399025|ref|YP_002994449.1| - 2.6e-46 157.7 8.5 2.9e-46 157.5 8.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|242399025|ref|YP_002994449.1| - 4.4e-09 36.7 8.7 0.00075 19.9 1.6 2.8 2 1 0 2 2 2 2 PhoU domain DUF1493 PF07377.12 gi|242399025|ref|YP_002994449.1| - 0.018 15.5 1.6 0.73 10.3 0.0 3.2 2 1 2 4 4 4 0 Protein of unknown function (DUF1493) MIP-T3_C PF17749.1 gi|242399025|ref|YP_002994449.1| - 0.053 13.5 1.9 0.1 12.5 0.3 2.2 2 0 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region DUF885 PF05960.11 gi|242399025|ref|YP_002994449.1| - 0.072 12.7 0.1 0.087 12.4 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) PDCD9 PF07147.12 gi|242399025|ref|YP_002994449.1| - 0.11 11.7 0.5 0.67 9.1 0.0 1.9 1 1 1 2 2 2 0 Mitochondrial 28S ribosomal protein S30 (PDCD9) NEXCaM_BD PF16644.5 gi|242399025|ref|YP_002994449.1| - 0.13 12.5 0.1 0.26 11.5 0.1 1.5 1 1 0 1 1 1 0 Regulatory region of Na+/H+ exchanger NHE binds to calmodulin ArdA PF07275.11 gi|242399025|ref|YP_002994449.1| - 1.1 9.8 5.8 0.47 11.0 1.1 2.1 1 1 1 2 2 2 0 Antirestriction protein (ArdA) AsnC_trans_reg PF01037.21 gi|242399026|ref|YP_002994450.1| - 5.5e-19 67.9 0.4 5.7e-19 67.8 0.4 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Spore_YhcN_YlaJ PF09580.10 gi|242399026|ref|YP_002994450.1| - 0.017 15.2 0.0 0.027 14.5 0.0 1.3 1 1 1 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) PIP49_N PF14875.6 gi|242399028|ref|YP_002994452.1| - 0.0077 16.1 0.1 0.015 15.2 0.0 1.5 2 0 0 2 2 2 1 N-term cysteine-rich ER, FAM69 Propep_M14 PF02244.16 gi|242399028|ref|YP_002994452.1| - 0.058 13.8 0.1 2.9 8.3 0.0 3.0 4 0 0 4 4 4 0 Carboxypeptidase activation peptide Ribo_biogen_C PF04034.13 gi|242399028|ref|YP_002994452.1| - 0.14 11.9 0.1 0.24 11.1 0.1 1.3 1 0 0 1 1 1 0 Ribosome biogenesis protein, C-terminal APH PF01636.23 gi|242399028|ref|YP_002994452.1| - 0.26 11.2 0.0 0.59 10.0 0.0 1.6 2 0 0 2 2 2 0 Phosphotransferase enzyme family PRA1 PF03208.19 gi|242399029|ref|YP_002994453.1| - 0.056 13.1 3.5 0.066 12.8 3.5 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF3017 PF11222.8 gi|242399029|ref|YP_002994453.1| - 0.83 9.9 10.5 1.8 8.9 6.9 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3017) YwiC PF14256.6 gi|242399029|ref|YP_002994453.1| - 0.95 9.8 8.8 1.1 9.5 0.4 2.0 1 1 1 2 2 2 0 YwiC-like protein TctB PF07331.11 gi|242399029|ref|YP_002994453.1| - 6.1 7.1 11.7 0.71 10.1 5.7 1.9 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF2892 PF11127.8 gi|242399029|ref|YP_002994453.1| - 6.2 6.9 11.2 5.2 7.2 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) Peptidase_S9 PF00326.21 gi|242399030|ref|YP_002994454.1| - 2.1e-52 177.7 0.0 2.9e-52 177.2 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|242399030|ref|YP_002994454.1| - 3.3e-11 43.3 0.0 5.1e-08 32.8 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) PD40 PF07676.12 gi|242399030|ref|YP_002994454.1| - 5e-06 26.3 0.3 0.0057 16.6 0.0 3.1 3 0 0 3 3 2 2 WD40-like Beta Propeller Repeat Abhydrolase_1 PF00561.20 gi|242399030|ref|YP_002994454.1| - 2.1e-05 24.3 0.0 9e-05 22.2 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|242399030|ref|YP_002994454.1| - 7.4e-05 22.1 0.1 0.0047 16.2 0.0 2.2 2 0 0 2 2 2 1 Serine aminopeptidase, S33 DLH PF01738.18 gi|242399030|ref|YP_002994454.1| - 0.00016 21.3 0.0 0.00039 20.1 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family AXE1 PF05448.12 gi|242399030|ref|YP_002994454.1| - 0.0002 20.2 0.5 0.027 13.2 0.5 2.9 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.7 gi|242399030|ref|YP_002994454.1| - 0.0055 17.3 0.0 0.014 16.0 0.0 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|242399030|ref|YP_002994454.1| - 0.026 14.3 0.1 1 9.1 0.0 2.8 2 1 0 2 2 2 0 Phospholipase/Carboxylesterase Op_neuropeptide PF08035.11 gi|242399030|ref|YP_002994454.1| - 0.028 14.3 0.1 3.3 7.7 0.1 2.9 3 0 0 3 3 3 0 Opioids neuropeptide DUF2920 PF11144.8 gi|242399030|ref|YP_002994454.1| - 0.048 12.8 0.0 9.5 5.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) DPPIV_N PF00930.21 gi|242399030|ref|YP_002994454.1| - 0.082 11.7 0.2 0.51 9.0 0.0 2.3 1 1 1 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Glyco_hydro_49N PF17433.2 gi|242399030|ref|YP_002994454.1| - 0.092 12.4 0.1 0.26 10.9 0.0 1.7 2 0 0 2 2 2 0 Glycosyl hydrolase family 49 N-terminal Ig-like domain NDUF_B6 PF09782.9 gi|242399030|ref|YP_002994454.1| - 0.093 12.9 0.2 0.23 11.6 0.2 1.6 1 1 0 1 1 1 0 NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit COesterase PF00135.28 gi|242399030|ref|YP_002994454.1| - 0.1 11.4 0.0 0.18 10.6 0.0 1.4 1 0 0 1 1 1 0 Carboxylesterase family MAF_flag10 PF01973.18 gi|242399031|ref|YP_002994455.1| - 1.1e-35 122.9 0.0 1.5e-35 122.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 NAD_Gly3P_dh_N PF01210.23 gi|242399031|ref|YP_002994455.1| - 0.086 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SBP_bac_5 PF00496.22 gi|242399033|ref|YP_002994457.1| - 2.3e-101 339.5 7.5 2.7e-101 339.2 7.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.12 gi|242399033|ref|YP_002994457.1| - 0.00078 19.1 0.3 0.053 13.1 0.3 2.6 2 0 0 2 2 2 1 Substrate binding domain of ABC-type glycine betaine transport system STAT6_C PF14596.6 gi|242399033|ref|YP_002994457.1| - 0.072 13.1 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 STAT6 C-terminal Cu-oxidase_4 PF02578.15 gi|242399033|ref|YP_002994457.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Multi-copper polyphenol oxidoreductase laccase BPD_transp_1 PF00528.22 gi|242399034|ref|YP_002994458.1| - 8.8e-48 162.5 11.0 8.8e-48 162.5 11.0 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|242399035|ref|YP_002994459.1| - 7.9e-27 94.2 11.1 7.9e-27 94.2 11.1 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|242399035|ref|YP_002994459.1| - 8.9e-08 32.0 3.5 8.9e-08 32.0 3.5 4.1 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|242399036|ref|YP_002994460.1| - 5.8e-30 104.6 0.0 8.2e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|242399036|ref|YP_002994460.1| - 5e-19 68.6 0.0 9.1e-19 67.7 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|242399036|ref|YP_002994460.1| - 7.3e-07 29.3 0.8 0.00038 20.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|242399036|ref|YP_002994460.1| - 3.1e-06 26.8 0.5 1.4e-05 24.7 0.5 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 gi|242399036|ref|YP_002994460.1| - 0.0013 17.9 0.0 0.0019 17.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|242399036|ref|YP_002994460.1| - 0.0027 17.4 0.0 0.0046 16.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain tRNA_lig_kinase PF08303.11 gi|242399036|ref|YP_002994460.1| - 0.0032 17.6 0.0 0.0066 16.6 0.0 1.5 1 0 0 1 1 1 1 tRNA ligase kinase domain AAA_15 PF13175.6 gi|242399036|ref|YP_002994460.1| - 0.012 15.3 1.2 0.37 10.4 0.2 2.1 1 1 1 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|242399036|ref|YP_002994460.1| - 0.027 13.8 0.0 0.49 9.8 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|242399036|ref|YP_002994460.1| - 0.038 14.4 0.0 0.097 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|242399036|ref|YP_002994460.1| - 0.065 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase NB-ARC PF00931.22 gi|242399036|ref|YP_002994460.1| - 0.069 12.3 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.29 gi|242399036|ref|YP_002994460.1| - 0.094 13.1 0.0 0.14 12.5 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|242399036|ref|YP_002994460.1| - 0.097 13.0 0.1 0.38 11.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|242399036|ref|YP_002994460.1| - 0.12 11.4 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_7 PF12775.7 gi|242399036|ref|YP_002994460.1| - 0.21 11.1 0.0 0.36 10.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|242399037|ref|YP_002994461.1| - 7.1e-32 110.8 0.0 9.8e-32 110.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|242399037|ref|YP_002994461.1| - 9.4e-22 77.3 0.2 2.2e-21 76.1 0.2 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|242399037|ref|YP_002994461.1| - 4.3e-05 23.8 1.1 0.00068 19.9 1.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|242399037|ref|YP_002994461.1| - 0.015 15.6 0.0 0.026 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|242399037|ref|YP_002994461.1| - 0.016 15.6 0.0 0.021 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|242399037|ref|YP_002994461.1| - 0.082 12.6 0.2 0.43 10.3 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein Rad17 PF03215.15 gi|242399037|ref|YP_002994461.1| - 0.097 12.6 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain ATP-synt_ab PF00006.25 gi|242399037|ref|YP_002994461.1| - 0.11 12.2 0.0 0.13 11.9 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.6 gi|242399037|ref|YP_002994461.1| - 0.11 12.2 0.1 2.2 7.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mut7-C PF01927.16 gi|242399038|ref|YP_002994462.1| - 2.2e-44 151.1 0.0 2.5e-44 150.9 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|242399038|ref|YP_002994462.1| - 1.7e-05 24.5 0.1 3.9e-05 23.3 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF5615) Rubredoxin PF00301.20 gi|242399038|ref|YP_002994462.1| - 0.011 15.7 1.0 2.3 8.3 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.10 gi|242399038|ref|YP_002994462.1| - 0.012 15.8 0.4 1.4 9.1 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.7 gi|242399038|ref|YP_002994462.1| - 0.03 14.7 1.1 0.97 9.9 0.2 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 ADK_lid PF05191.14 gi|242399038|ref|YP_002994462.1| - 0.083 12.9 0.2 14 5.7 0.0 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid E6 PF00518.17 gi|242399038|ref|YP_002994462.1| - 0.1 13.1 0.3 0.33 11.4 0.3 1.7 1 1 1 2 2 2 0 Early Protein (E6) Zn_ribbon_SprT PF17283.2 gi|242399038|ref|YP_002994462.1| - 0.12 12.3 1.9 8.2 6.4 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf_UBZ PF18439.1 gi|242399038|ref|YP_002994462.1| - 0.18 11.4 1.9 11 5.7 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ACC PF17848.1 gi|242399038|ref|YP_002994462.1| - 0.43 10.7 2.2 14 5.9 0.2 2.9 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain TF_Zn_Ribbon PF08271.12 gi|242399038|ref|YP_002994462.1| - 0.5 9.9 4.1 9.5 5.8 4.1 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding DUF35_N PF12172.8 gi|242399038|ref|YP_002994462.1| - 0.79 9.7 4.2 13 5.8 0.4 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Lactamase_B_2 PF12706.7 gi|242399039|ref|YP_002994463.1| - 1.5e-16 60.6 0.1 1.8e-16 60.2 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|242399039|ref|YP_002994463.1| - 5.6e-06 26.5 3.7 8.7e-06 25.9 2.8 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|242399039|ref|YP_002994463.1| - 0.0089 15.9 0.1 0.014 15.3 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Nitroreductase PF00881.24 gi|242399040|ref|YP_002994464.1| - 1.2e-29 103.5 0.0 1.5e-29 103.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|242399040|ref|YP_002994464.1| - 1.2e-11 44.6 0.0 5.7e-06 26.1 0.4 2.4 1 1 1 2 2 2 2 Putative TM nitroreductase RecX PF02631.16 gi|242399040|ref|YP_002994464.1| - 0.15 12.5 0.6 0.24 11.8 0.6 1.5 1 1 0 1 1 1 0 RecX family DSPc PF00782.20 gi|242399041|ref|YP_002994465.1| - 3.3e-19 69.0 0.0 3.7e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|242399041|ref|YP_002994465.1| - 1.7e-07 31.1 0.0 2.1e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|242399041|ref|YP_002994465.1| - 4.9e-06 26.3 0.0 6.5e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) PTPlike_phytase PF14566.6 gi|242399041|ref|YP_002994465.1| - 0.00041 20.5 0.0 0.0047 17.1 0.0 2.0 1 1 0 2 2 2 1 Inositol hexakisphosphate Y_phosphatase3 PF13350.6 gi|242399041|ref|YP_002994465.1| - 0.0033 17.4 0.0 0.0036 17.3 0.0 1.2 1 0 0 1 1 1 1 Tyrosine phosphatase family Init_tRNA_PT PF04179.12 gi|242399041|ref|YP_002994465.1| - 0.04 14.2 0.0 0.054 13.8 0.0 1.3 1 0 0 1 1 1 0 Rit1 DUSP-like domain DcuC PF03606.15 gi|242399042|ref|YP_002994466.1| - 0.024 13.1 0.7 0.036 12.5 0.7 1.2 1 0 0 1 1 1 0 C4-dicarboxylate anaerobic carrier tRNA_anti-like PF12869.7 gi|242399042|ref|YP_002994466.1| - 0.16 11.6 0.1 0.54 9.8 0.1 1.8 1 0 0 1 1 1 0 tRNA_anti-like TRP PF06011.12 gi|242399045|ref|YP_002994469.1| - 0.021 13.6 2.1 0.027 13.2 2.1 1.1 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel DUF3810 PF12725.7 gi|242399045|ref|YP_002994469.1| - 1.4 8.2 5.8 2.4 7.4 5.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) LigB PF02900.18 gi|242399046|ref|YP_002994470.1| - 1.4e-18 67.0 0.0 1.6e-18 66.8 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Memo PF01875.17 gi|242399046|ref|YP_002994470.1| - 0.0073 15.5 0.0 0.034 13.3 0.0 1.9 2 0 0 2 2 2 1 Memo-like protein PALP PF00291.25 gi|242399047|ref|YP_002994471.1| - 2.7e-74 250.2 0.0 3.1e-74 250.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Arginase PF00491.21 gi|242399048|ref|YP_002994472.1| - 1.4e-75 254.4 0.0 1.7e-75 254.1 0.0 1.1 1 0 0 1 1 1 1 Arginase family tRNA_bind PF01588.20 gi|242399049|ref|YP_002994473.1| - 4.7e-26 90.7 0.0 5.3e-26 90.6 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain FMN_red PF03358.15 gi|242399050|ref|YP_002994474.1| - 8.6e-20 71.0 0.0 1.7e-19 70.1 0.0 1.4 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|242399050|ref|YP_002994474.1| - 0.0071 16.1 0.0 0.0095 15.7 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Acetyltransf_1 PF00583.25 gi|242399051|ref|YP_002994475.1| - 8.3e-12 45.4 0.0 2.1e-11 44.1 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|242399051|ref|YP_002994475.1| - 3.4e-07 30.6 0.0 6.6e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|242399051|ref|YP_002994475.1| - 0.00083 19.5 0.1 0.046 13.9 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|242399051|ref|YP_002994475.1| - 0.0044 16.9 0.0 0.015 15.2 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|242399051|ref|YP_002994475.1| - 0.0067 17.1 0.0 0.013 16.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|242399051|ref|YP_002994475.1| - 0.011 15.7 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|242399051|ref|YP_002994475.1| - 0.1 12.7 0.0 0.58 10.2 0.0 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Myb_DNA-binding PF00249.31 gi|242399051|ref|YP_002994475.1| - 0.1 12.8 0.2 0.27 11.5 0.2 1.6 1 0 0 1 1 1 0 Myb-like DNA-binding domain B5 PF03484.15 gi|242399051|ref|YP_002994475.1| - 0.15 12.4 0.0 5.6 7.4 0.0 2.9 2 1 1 3 3 3 0 tRNA synthetase B5 domain PALP PF00291.25 gi|242399052|ref|YP_002994476.1| - 8.4e-54 183.0 0.0 1e-53 182.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1611 PF07755.11 gi|242399053|ref|YP_002994477.1| - 1.7e-65 220.1 0.0 2.2e-65 219.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|242399053|ref|YP_002994477.1| - 1.6e-30 105.1 0.0 3.6e-30 104.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_N) Rossmann-like domain DapB_N PF01113.20 gi|242399053|ref|YP_002994477.1| - 0.00032 20.8 0.0 0.041 14.0 0.0 2.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus CbiA PF01656.23 gi|242399053|ref|YP_002994477.1| - 0.068 13.2 0.1 1 9.4 0.0 2.7 3 1 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain PK_C PF02887.16 gi|242399053|ref|YP_002994477.1| - 0.09 13.0 0.0 0.66 10.2 0.0 2.5 3 1 0 3 3 3 0 Pyruvate kinase, alpha/beta domain Amidase_6 PF12671.7 gi|242399054|ref|YP_002994478.1| - 0.051 13.7 0.8 0.11 12.5 0.8 1.5 1 0 0 1 1 1 0 Putative amidase domain Acetyltransf_1 PF00583.25 gi|242399055|ref|YP_002994479.1| - 1.9e-13 50.6 0.1 2.4e-13 50.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|242399055|ref|YP_002994479.1| - 4e-09 36.5 0.0 5.2e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|242399055|ref|YP_002994479.1| - 3.1e-06 27.5 0.2 5e-06 26.8 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|242399055|ref|YP_002994479.1| - 0.031 14.4 0.1 0.057 13.6 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|242399055|ref|YP_002994479.1| - 0.092 12.7 0.0 0.31 11.0 0.0 1.7 2 0 0 2 2 2 0 FR47-like protein Acetyltransf_3 PF13302.7 gi|242399055|ref|YP_002994479.1| - 0.13 13.0 0.0 0.15 12.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MFS_1 PF07690.16 gi|242399056|ref|YP_002994480.1| - 4.5e-13 48.8 28.3 4.5e-13 48.8 28.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1 PF07690.16 gi|242399057|ref|YP_002994481.1| - 1.1e-12 47.6 24.9 2.6e-06 26.6 16.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Syntaxin-5_N PF11416.8 gi|242399057|ref|YP_002994481.1| - 0.25 10.6 0.0 0.41 9.9 0.0 1.3 1 0 0 1 1 1 0 Syntaxin-5 N-terminal, Sly1p-binding domain NapE PF06796.11 gi|242399057|ref|YP_002994481.1| - 7.8 6.1 7.8 11 5.6 2.4 2.8 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE ABC_membrane PF00664.23 gi|242399058|ref|YP_002994482.1| - 1.6e-56 191.9 12.2 2e-56 191.6 12.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|242399058|ref|YP_002994482.1| - 2.1e-32 112.5 0.0 3.3e-32 111.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA PF00004.29 gi|242399058|ref|YP_002994482.1| - 0.0037 17.7 0.1 0.72 10.3 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|242399058|ref|YP_002994482.1| - 0.016 14.6 0.1 0.48 9.8 0.0 2.0 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF87 PF01935.17 gi|242399058|ref|YP_002994482.1| - 0.021 14.9 0.1 0.048 13.8 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain NB-ARC PF00931.22 gi|242399058|ref|YP_002994482.1| - 0.095 11.9 0.0 0.2 10.8 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|242399058|ref|YP_002994482.1| - 0.095 13.0 0.1 0.4 11.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.6 gi|242399058|ref|YP_002994482.1| - 0.14 11.9 1.2 4.7 6.9 0.1 2.3 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|242399058|ref|YP_002994482.1| - 0.15 12.5 0.3 0.32 11.5 0.3 1.4 1 0 0 1 1 1 0 AAA domain ABC_membrane_2 PF06472.15 gi|242399058|ref|YP_002994482.1| - 0.16 11.3 8.6 0.01 15.3 3.6 1.5 2 0 0 2 2 2 0 ABC transporter transmembrane region 2 AAA_10 PF12846.7 gi|242399058|ref|YP_002994482.1| - 0.18 10.7 0.0 0.33 9.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.6 gi|242399058|ref|YP_002994482.1| - 0.24 11.1 0.2 0.86 9.3 0.2 1.9 1 1 0 1 1 1 0 AAA domain ABC_membrane PF00664.23 gi|242399060|ref|YP_002994484.1| - 2.4e-45 155.3 16.3 3.4e-45 154.8 16.3 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|242399060|ref|YP_002994484.1| - 6.6e-36 123.8 0.0 1.2e-35 123.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|242399060|ref|YP_002994484.1| - 4.1e-06 27.3 0.0 1e-05 26.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|242399060|ref|YP_002994484.1| - 9.1e-05 22.4 0.2 0.056 13.2 0.0 2.4 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|242399060|ref|YP_002994484.1| - 0.00014 21.5 0.0 0.00033 20.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|242399060|ref|YP_002994484.1| - 0.00028 21.5 0.0 0.00095 19.7 0.0 1.9 2 0 0 2 2 1 1 AAA domain T2SSE PF00437.20 gi|242399060|ref|YP_002994484.1| - 0.00055 19.1 0.0 0.0011 18.1 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.6 gi|242399060|ref|YP_002994484.1| - 0.00087 19.1 0.0 0.0022 17.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|242399060|ref|YP_002994484.1| - 0.00092 19.5 0.0 0.0025 18.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|242399060|ref|YP_002994484.1| - 0.001 18.7 0.0 0.0021 17.7 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SMC_N PF02463.19 gi|242399060|ref|YP_002994484.1| - 0.0014 18.1 0.2 0.18 11.2 0.2 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|242399060|ref|YP_002994484.1| - 0.0021 18.5 0.0 0.0066 16.9 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|242399060|ref|YP_002994484.1| - 0.0033 17.4 0.0 0.0078 16.1 0.0 1.7 1 0 0 1 1 1 1 NTPase Rad17 PF03215.15 gi|242399060|ref|YP_002994484.1| - 0.0052 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_28 PF13521.6 gi|242399060|ref|YP_002994484.1| - 0.0054 17.0 0.0 0.01 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|242399060|ref|YP_002994484.1| - 0.0097 15.2 0.0 0.026 13.8 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 gi|242399060|ref|YP_002994484.1| - 0.019 14.7 0.0 0.031 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|242399060|ref|YP_002994484.1| - 0.02 14.9 0.0 0.059 13.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|242399060|ref|YP_002994484.1| - 0.022 14.7 0.0 0.07 13.0 0.0 1.8 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea RuvB_N PF05496.12 gi|242399060|ref|YP_002994484.1| - 0.026 14.3 0.2 0.1 12.3 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|242399060|ref|YP_002994484.1| - 0.034 13.5 0.0 0.064 12.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 gi|242399060|ref|YP_002994484.1| - 0.037 12.8 0.0 5.2 5.8 0.0 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.12 gi|242399060|ref|YP_002994484.1| - 0.04 13.8 0.0 0.088 12.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain MeaB PF03308.16 gi|242399060|ref|YP_002994484.1| - 0.044 12.8 0.0 0.075 12.0 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF815 PF05673.13 gi|242399060|ref|YP_002994484.1| - 0.046 12.9 0.0 0.12 11.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_33 PF13671.6 gi|242399060|ref|YP_002994484.1| - 0.047 13.9 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|242399060|ref|YP_002994484.1| - 0.047 14.2 0.1 0.12 12.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|242399060|ref|YP_002994484.1| - 0.05 12.8 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_19 PF13245.6 gi|242399060|ref|YP_002994484.1| - 0.053 13.9 0.0 0.18 12.1 0.0 1.9 2 0 0 2 2 1 0 AAA domain DAP3 PF10236.9 gi|242399060|ref|YP_002994484.1| - 0.059 12.5 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_25 PF13481.6 gi|242399060|ref|YP_002994484.1| - 0.074 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|242399060|ref|YP_002994484.1| - 0.1 13.0 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|242399060|ref|YP_002994484.1| - 0.11 12.5 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|242399060|ref|YP_002994484.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain RuvA_C PF07499.13 gi|242399060|ref|YP_002994484.1| - 0.13 12.8 0.2 22 5.6 0.1 2.7 2 0 0 2 2 2 0 RuvA, C-terminal domain Viral_helicase1 PF01443.18 gi|242399060|ref|YP_002994484.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|242399060|ref|YP_002994484.1| - 0.18 12.2 0.0 0.51 10.8 0.0 1.9 2 0 0 2 2 1 0 RNA helicase AAA_13 PF13166.6 gi|242399060|ref|YP_002994484.1| - 0.24 10.0 0.0 12 4.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain CTP_transf_like PF01467.26 gi|242399061|ref|YP_002994485.1| - 3.8e-19 69.3 0.0 4.6e-18 65.8 0.0 2.2 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|242399061|ref|YP_002994485.1| - 0.00055 19.3 0.1 0.14 11.3 0.0 2.1 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase SAM_adeno_trans PF01887.16 gi|242399062|ref|YP_002994486.1| - 3.7e-78 262.2 0.0 4.2e-78 262.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Transglut_core PF01841.19 gi|242399063|ref|YP_002994487.1| - 2.3e-05 24.8 0.0 3.9e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily CARDB PF07705.11 gi|242399063|ref|YP_002994487.1| - 0.0015 18.8 0.0 0.2 11.9 0.0 2.7 2 0 0 2 2 2 1 CARDB N_BRCA1_IG PF16158.5 gi|242399063|ref|YP_002994487.1| - 0.0021 18.8 0.0 2 9.2 0.0 2.6 2 0 0 2 2 2 2 Ig-like domain from next to BRCA1 gene UBA_2 PF08587.11 gi|242399063|ref|YP_002994487.1| - 0.076 13.1 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 Ubiquitin associated domain (UBA) DUF2393 PF09624.10 gi|242399063|ref|YP_002994487.1| - 1.9 8.4 5.3 4.5 7.2 0.3 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF2393) Trm56 PF01994.16 gi|242399064|ref|YP_002994488.1| - 5.3e-50 168.3 0.1 7.5e-50 167.8 0.1 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.19 gi|242399064|ref|YP_002994488.1| - 0.0056 16.9 0.0 0.0081 16.3 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF4058 PF13267.6 gi|242399064|ref|YP_002994488.1| - 0.055 12.9 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4058) CDP-OH_P_transf PF01066.21 gi|242399065|ref|YP_002994489.1| - 1.8e-14 54.2 1.4 1.8e-14 54.2 1.4 1.7 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase HAD_2 PF13419.6 gi|242399066|ref|YP_002994490.1| - 1.3e-28 100.3 0.3 1.9e-28 99.8 0.3 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242399066|ref|YP_002994490.1| - 5.4e-18 66.0 0.2 3e-17 63.6 0.0 2.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|242399066|ref|YP_002994490.1| - 1.7e-09 37.6 0.0 1e-07 31.9 0.0 2.4 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|242399066|ref|YP_002994490.1| - 3.5e-06 27.6 0.0 5e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Mad3_BUB1_I PF08311.12 gi|242399066|ref|YP_002994490.1| - 0.0011 19.0 0.3 0.0051 16.8 0.3 1.9 2 0 0 2 2 2 1 Mad3/BUB1 homology region 1 Put_Phosphatase PF06888.12 gi|242399066|ref|YP_002994490.1| - 0.14 11.5 0.1 1.5 8.2 0.0 2.4 3 0 0 3 3 3 0 Putative Phosphatase DUF4230 PF14014.6 gi|242399067|ref|YP_002994491.1| - 0.068 13.4 0.1 0.077 13.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4230) ASCH PF04266.14 gi|242399068|ref|YP_002994492.1| - 4.9e-20 72.1 0.3 1.2e-19 70.9 0.1 1.6 2 0 0 2 2 2 1 ASCH domain SAP30_Sin3_bdg PF13867.6 gi|242399068|ref|YP_002994492.1| - 0.0024 18.2 0.2 0.049 14.0 0.0 2.4 2 0 0 2 2 2 1 Sin3 binding region of histone deacetylase complex subunit SAP30 ASCH PF04266.14 gi|242399069|ref|YP_002994493.1| - 6.6e-12 46.0 0.2 7.8e-12 45.7 0.2 1.1 1 0 0 1 1 1 1 ASCH domain DUF3850 PF12961.7 gi|242399069|ref|YP_002994493.1| - 0.091 12.8 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3850) Arc_PepC PF06819.11 gi|242399070|ref|YP_002994494.1| - 1.9e-26 92.4 2.0 3.9e-26 91.4 2.0 1.5 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain Arc_PepC_II PF06847.11 gi|242399070|ref|YP_002994494.1| - 2e-06 28.2 1.1 5.6e-06 26.8 0.0 2.3 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|242399070|ref|YP_002994494.1| - 3.5e-06 27.4 9.5 3.5e-06 27.4 9.5 2.6 3 1 0 3 3 3 1 Type IV leader peptidase family HAD PF12710.7 gi|242399071|ref|YP_002994495.1| - 1.8e-18 67.6 0.1 2.2e-18 67.4 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242399071|ref|YP_002994495.1| - 7.9e-15 55.7 0.0 2.9e-14 53.9 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|242399071|ref|YP_002994495.1| - 5.2e-08 32.9 0.2 5.5e-06 26.3 0.2 2.7 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|242399071|ref|YP_002994495.1| - 6.3e-08 32.9 0.1 1.4e-06 28.5 0.1 2.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|242399071|ref|YP_002994495.1| - 0.0023 17.4 0.0 0.051 13.0 0.0 2.2 1 1 0 2 2 2 1 Putative Phosphatase HD_2 PF12917.7 gi|242399071|ref|YP_002994495.1| - 0.032 14.0 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 HD containing hydrolase-like enzyme S6PP PF05116.13 gi|242399071|ref|YP_002994495.1| - 0.083 12.4 0.0 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase PCMT PF01135.19 gi|242399072|ref|YP_002994496.1| - 5.5e-67 225.6 0.0 6.3e-67 225.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|242399072|ref|YP_002994496.1| - 5.8e-07 29.4 0.0 8.5e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|242399072|ref|YP_002994496.1| - 2.5e-06 28.1 0.0 4.1e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|242399072|ref|YP_002994496.1| - 1.4e-05 24.3 0.0 1.7e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|242399072|ref|YP_002994496.1| - 9.2e-05 22.3 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|242399072|ref|YP_002994496.1| - 0.00075 19.1 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_3 PF01596.17 gi|242399072|ref|YP_002994496.1| - 0.006 15.8 0.0 0.0085 15.3 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_11 PF08241.12 gi|242399072|ref|YP_002994496.1| - 0.0062 17.2 0.0 0.011 16.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|242399072|ref|YP_002994496.1| - 0.0073 15.6 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|242399072|ref|YP_002994496.1| - 0.0095 15.9 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|242399072|ref|YP_002994496.1| - 0.016 15.0 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase GCD14 PF08704.10 gi|242399072|ref|YP_002994496.1| - 0.033 13.9 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit PrmA PF06325.13 gi|242399072|ref|YP_002994496.1| - 0.041 13.3 0.0 0.059 12.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) eIF-5_eIF-2B PF01873.17 gi|242399073|ref|YP_002994497.1| - 1.8e-05 24.6 1.0 3.6e-05 23.6 1.0 1.5 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.12 gi|242399073|ref|YP_002994497.1| - 7.2e-05 22.2 0.2 0.00018 20.9 0.2 1.8 1 0 0 1 1 1 1 TFIIB zinc-binding Elf1 PF05129.13 gi|242399073|ref|YP_002994497.1| - 0.00028 20.9 0.4 0.00064 19.7 0.1 1.7 2 0 0 2 2 1 1 Transcription elongation factor Elf1 like Ribosomal_L27A PF00828.19 gi|242399073|ref|YP_002994497.1| - 0.0043 17.7 0.2 0.0085 16.8 0.2 1.4 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A UPF0547 PF10571.9 gi|242399073|ref|YP_002994497.1| - 0.0047 17.0 5.5 0.028 14.5 0.1 2.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|242399073|ref|YP_002994497.1| - 0.006 16.5 1.7 0.17 11.9 0.1 2.4 2 0 0 2 2 2 1 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.7 gi|242399073|ref|YP_002994497.1| - 0.008 16.1 0.4 0.014 15.3 0.4 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain NMD3 PF04981.13 gi|242399073|ref|YP_002994497.1| - 0.011 15.2 0.6 0.015 14.7 0.6 1.2 1 0 0 1 1 1 0 NMD3 family Zn-ribbon_8 PF09723.10 gi|242399073|ref|YP_002994497.1| - 0.016 15.4 0.1 8.2 6.6 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|242399073|ref|YP_002994497.1| - 0.036 14.1 2.6 0.92 9.6 2.0 2.7 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|242399073|ref|YP_002994497.1| - 0.052 13.5 6.0 0.073 13.0 3.8 2.4 2 1 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|242399073|ref|YP_002994497.1| - 0.062 13.7 0.2 0.1 13.0 0.2 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_10 PF10058.9 gi|242399073|ref|YP_002994497.1| - 0.082 12.6 0.5 0.23 11.2 0.5 1.8 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein CcmF_C PF16327.5 gi|242399073|ref|YP_002994497.1| - 0.13 11.5 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Cytochrome c-type biogenesis protein CcmF C-terminal TFIIS_C PF01096.18 gi|242399073|ref|YP_002994497.1| - 0.19 11.6 4.9 6.5 6.7 4.7 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) DUF4379 PF14311.6 gi|242399073|ref|YP_002994497.1| - 0.21 12.0 1.2 1.5 9.2 1.6 2.0 1 1 1 2 2 2 0 Probable Zinc-ribbon domain zf-ACC PF17848.1 gi|242399073|ref|YP_002994497.1| - 0.39 10.8 4.6 4.9 7.3 0.5 3.2 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain DUF951 PF06107.11 gi|242399073|ref|YP_002994497.1| - 0.71 9.8 4.9 0.25 11.3 0.5 2.4 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF951) DNA_RNApol_7kD PF03604.13 gi|242399073|ref|YP_002994497.1| - 1 9.1 4.1 5.3 6.8 4.0 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.6 gi|242399073|ref|YP_002994497.1| - 1.3 8.8 5.8 2.2 8.1 3.1 2.7 2 1 0 2 2 2 0 zinc-ribbon domain MarR_2 PF12802.7 gi|242399074|ref|YP_002994498.1| - 7.3e-08 32.2 0.0 1.4e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|242399074|ref|YP_002994498.1| - 2.8e-07 30.4 0.1 4.7e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|242399074|ref|YP_002994498.1| - 9.3e-06 25.4 0.5 2e-05 24.4 0.5 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|242399074|ref|YP_002994498.1| - 2.6e-05 24.0 0.1 5.1e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|242399074|ref|YP_002994498.1| - 0.00011 22.7 0.2 0.00023 21.6 0.2 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|242399074|ref|YP_002994498.1| - 0.00092 19.2 0.0 0.0015 18.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|242399074|ref|YP_002994498.1| - 0.0014 18.6 0.1 0.0026 17.7 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|242399074|ref|YP_002994498.1| - 0.0026 17.3 0.1 0.0045 16.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|242399074|ref|YP_002994498.1| - 0.0029 17.4 0.0 0.0044 16.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain DprA_WH PF17782.1 gi|242399074|ref|YP_002994498.1| - 0.0032 17.5 0.0 0.0049 17.0 0.0 1.2 1 0 0 1 1 1 1 DprA winged helix domain DUF2250 PF10007.9 gi|242399074|ref|YP_002994498.1| - 0.0096 16.0 0.2 0.018 15.1 0.2 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_26 PF13443.6 gi|242399074|ref|YP_002994498.1| - 0.035 14.5 0.1 0.062 13.7 0.1 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 gi|242399074|ref|YP_002994498.1| - 0.12 12.4 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|242399074|ref|YP_002994498.1| - 0.12 12.7 0.1 0.24 11.8 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor Sulfolobus_pRN PF05584.11 gi|242399074|ref|YP_002994498.1| - 0.12 12.4 1.0 0.23 11.5 0.3 1.8 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein DUF4841 PF16129.5 gi|242399074|ref|YP_002994498.1| - 0.16 12.2 0.1 0.36 11.1 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4841) PAPS_reduct PF01507.19 gi|242399075|ref|YP_002994499.1| - 2.5e-43 148.1 0.0 7.6e-43 146.6 0.0 1.9 2 0 0 2 2 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|242399075|ref|YP_002994499.1| - 1.4e-14 53.8 1.8 1.4e-14 53.8 1.8 1.8 2 0 0 2 2 1 1 PUA domain Fer4 PF00037.27 gi|242399075|ref|YP_002994499.1| - 6.3e-11 41.6 16.4 8e-06 25.5 4.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|242399075|ref|YP_002994499.1| - 1.1e-09 38.7 11.3 3.4e-09 37.1 11.3 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|242399075|ref|YP_002994499.1| - 4.6e-09 36.3 9.8 1.4e-08 34.8 9.8 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242399075|ref|YP_002994499.1| - 2.1e-07 30.9 10.3 2.1e-07 30.9 10.3 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|242399075|ref|YP_002994499.1| - 5.1e-07 29.7 9.1 1.5e-06 28.2 9.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242399075|ref|YP_002994499.1| - 1.8e-06 27.7 11.8 0.00017 21.4 2.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|242399075|ref|YP_002994499.1| - 1.9e-06 28.7 8.7 0.018 16.0 0.2 3.7 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|242399075|ref|YP_002994499.1| - 3.2e-06 27.5 5.8 0.027 14.9 0.8 2.9 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|242399075|ref|YP_002994499.1| - 6.8e-06 25.9 15.6 6.5e-05 22.8 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|242399075|ref|YP_002994499.1| - 6.4e-05 23.4 13.5 0.015 15.8 1.1 2.9 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|242399075|ref|YP_002994499.1| - 0.00057 20.2 17.0 0.0038 17.6 1.9 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|242399075|ref|YP_002994499.1| - 0.0038 18.0 4.6 0.2 12.5 0.3 2.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|242399075|ref|YP_002994499.1| - 0.0075 16.8 9.9 0.086 13.4 1.3 2.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I ATP_bind_3 PF01171.20 gi|242399075|ref|YP_002994499.1| - 0.0077 16.0 0.0 0.021 14.6 0.0 1.8 2 0 0 2 2 1 1 PP-loop family UPF0113 PF03657.13 gi|242399075|ref|YP_002994499.1| - 0.013 15.7 0.2 0.037 14.3 0.2 1.8 1 0 0 1 1 1 0 UPF0113 PUA domain Fer4_3 PF12798.7 gi|242399075|ref|YP_002994499.1| - 0.014 16.3 3.6 0.014 16.3 3.6 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|242399075|ref|YP_002994499.1| - 0.029 15.1 10.9 0.19 12.5 1.2 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain PUA_3 PF17785.1 gi|242399075|ref|YP_002994499.1| - 0.078 12.8 0.3 0.18 11.7 0.3 1.6 1 0 0 1 1 1 0 PUA-like domain Fer4_18 PF13746.6 gi|242399075|ref|YP_002994499.1| - 0.089 13.0 10.7 0.31 11.3 2.3 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain MazE_antitoxin PF04014.18 gi|242399075|ref|YP_002994499.1| - 0.21 11.5 3.8 0.9 9.5 0.2 2.8 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin DUF4139 PF13598.6 gi|242399077|ref|YP_002994501.1| - 0.0036 17.1 0.0 0.12 12.1 0.0 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4139) LSM PF01423.22 gi|242399077|ref|YP_002994501.1| - 0.023 14.4 0.1 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 LSM domain SM-ATX PF14438.6 gi|242399077|ref|YP_002994501.1| - 0.075 13.2 0.2 0.42 10.8 0.1 2.2 3 0 0 3 3 3 0 Ataxin 2 SM domain ATP-grasp_5 PF13549.6 gi|242399078|ref|YP_002994502.1| - 1.3e-81 273.3 0.5 1.5e-81 273.1 0.5 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|242399078|ref|YP_002994502.1| - 4.3e-10 39.5 0.9 7.5e-10 38.7 0.9 1.5 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|242399078|ref|YP_002994502.1| - 7.8e-05 22.5 0.3 0.00019 21.3 0.1 1.7 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|242399078|ref|YP_002994502.1| - 0.00013 21.6 0.0 0.00024 20.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|242399078|ref|YP_002994502.1| - 0.00029 20.4 0.2 0.00085 18.9 0.1 1.8 1 1 1 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain PI_PP_C PF18365.1 gi|242399078|ref|YP_002994502.1| - 0.091 12.7 0.0 0.26 11.3 0.0 1.7 2 0 0 2 2 2 0 Phosphoinositide phosphatase C-terminal domain Ribosom_S30AE_C PF16321.5 gi|242399078|ref|YP_002994502.1| - 0.28 10.9 1.1 5.8 6.7 0.1 2.5 2 0 0 2 2 2 0 Sigma 54 modulation/S30EA ribosomal protein C terminus GCHY-1 PF02649.14 gi|242399079|ref|YP_002994503.1| - 8.1e-65 218.9 5.6 9.1e-65 218.7 5.6 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 ATP-cone PF03477.16 gi|242399079|ref|YP_002994503.1| - 0.13 12.9 3.5 9.2 6.9 0.2 3.1 2 1 1 3 3 3 0 ATP cone domain DUF4129 PF13559.6 gi|242399080|ref|YP_002994504.1| - 1.1e-05 25.6 0.0 0.0013 19.0 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Syntaxin-6_N PF09177.11 gi|242399080|ref|YP_002994504.1| - 0.0015 19.0 0.0 0.0024 18.4 0.0 1.3 1 0 0 1 1 1 1 Syntaxin 6, N-terminal Glucos_trans_II PF14264.6 gi|242399080|ref|YP_002994504.1| - 0.03 13.7 6.8 0.042 13.2 6.8 1.2 1 0 0 1 1 1 0 Glucosyl transferase GtrII Oxidored_q3 PF00499.20 gi|242399080|ref|YP_002994504.1| - 0.092 12.5 3.9 1.5 8.6 3.9 2.2 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ATP_synt_H PF05493.13 gi|242399080|ref|YP_002994504.1| - 0.36 11.3 3.7 2.7 8.5 0.5 2.6 2 1 0 2 2 2 0 ATP synthase subunit H RDD PF06271.12 gi|242399080|ref|YP_002994504.1| - 3.9 7.7 7.3 39 4.4 4.2 2.2 2 0 0 2 2 2 0 RDD family DUF1699 PF08004.11 gi|242399081|ref|YP_002994505.1| - 1.4e-09 37.7 0.3 2.2e-09 37.1 0.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_23 PF13384.6 gi|242399081|ref|YP_002994505.1| - 2.2e-05 24.1 0.0 4.2e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_32 PF13565.6 gi|242399081|ref|YP_002994505.1| - 0.00018 22.1 0.1 0.0003 21.3 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|242399081|ref|YP_002994505.1| - 0.00074 19.5 0.5 0.0013 18.8 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_40 PF14493.6 gi|242399081|ref|YP_002994505.1| - 0.017 15.6 0.3 0.92 10.0 0.0 2.6 2 1 1 3 3 3 0 Helix-turn-helix domain DUF3071 PF11268.8 gi|242399081|ref|YP_002994505.1| - 0.023 14.8 0.0 0.025 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) TrmB PF01978.19 gi|242399081|ref|YP_002994505.1| - 0.023 14.6 0.1 0.53 10.2 0.0 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MerR_1 PF13411.6 gi|242399081|ref|YP_002994505.1| - 0.028 14.5 0.1 0.063 13.4 0.1 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein Sigma70_r4_2 PF08281.12 gi|242399081|ref|YP_002994505.1| - 0.041 13.6 0.0 0.092 12.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.6 gi|242399081|ref|YP_002994505.1| - 0.042 13.9 0.0 3.6 7.7 0.0 2.2 1 1 1 2 2 2 0 Winged helix-turn helix GerE PF00196.19 gi|242399081|ref|YP_002994505.1| - 0.059 12.9 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_28 PF13518.6 gi|242399081|ref|YP_002994505.1| - 0.074 13.2 0.0 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|242399081|ref|YP_002994505.1| - 0.11 12.5 0.6 1.1 9.3 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix DUF530 PF04409.12 gi|242399082|ref|YP_002994506.1| - 6.9e-21 74.2 17.4 1.1e-17 63.6 8.9 3.5 1 1 1 2 2 2 2 Protein of unknown function (DUF530) TP6A_N PF04406.14 gi|242399083|ref|YP_002994507.1| - 2.8e-19 68.9 0.0 4.9e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|242399083|ref|YP_002994507.1| - 0.003 17.5 0.0 0.0056 16.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.11 gi|242399084|ref|YP_002994508.1| - 1.8e-55 187.1 0.0 3.3e-55 186.2 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|242399084|ref|YP_002994508.1| - 3.2e-11 43.7 0.2 6.4e-11 42.8 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|242399084|ref|YP_002994508.1| - 2.3e-09 37.2 0.0 4.6e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Phage_min_cap2 PF06152.11 gi|242399084|ref|YP_002994508.1| - 0.1 11.5 2.6 0.08 11.8 0.4 1.8 2 0 0 2 2 2 0 Phage minor capsid protein 2 KH_1 PF00013.29 gi|242399085|ref|YP_002994509.1| - 1.1e-17 63.6 7.8 3.6e-10 39.5 0.3 2.4 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|242399085|ref|YP_002994509.1| - 3.9e-07 30.1 0.0 6.8e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Krr1 KH1 domain KH_2 PF07650.17 gi|242399085|ref|YP_002994509.1| - 6.9e-06 25.8 9.6 0.0002 21.1 0.7 2.8 2 1 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|242399085|ref|YP_002994509.1| - 0.0057 16.5 6.0 0.31 11.0 0.5 2.9 2 1 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|242399085|ref|YP_002994509.1| - 0.71 10.0 6.5 8.6 6.5 0.9 2.4 2 0 0 2 2 2 0 NusA-like KH domain RIO1 PF01163.22 gi|242399086|ref|YP_002994510.1| - 5.1e-54 182.7 0.2 7.2e-54 182.3 0.2 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|242399086|ref|YP_002994510.1| - 3.8e-05 23.2 0.1 0.00019 20.9 0.1 2.0 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|242399086|ref|YP_002994510.1| - 0.00027 20.9 0.0 0.00094 19.2 0.0 1.7 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|242399086|ref|YP_002994510.1| - 0.076 11.8 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Fungal protein kinase eIF-1a PF01176.19 gi|242399087|ref|YP_002994511.1| - 8.2e-21 73.6 2.7 1.1e-20 73.1 2.0 1.6 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 gi|242399087|ref|YP_002994511.1| - 0.0001 22.0 0.1 0.0002 21.1 0.1 1.5 1 0 0 1 1 1 1 RsgA N-terminal domain AAA_17 PF13207.6 gi|242399088|ref|YP_002994512.1| - 0.00074 20.0 0.0 0.0018 18.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain SRP54_N PF02881.19 gi|242399088|ref|YP_002994512.1| - 0.11 12.7 1.8 0.44 10.8 1.1 2.4 2 0 0 2 2 2 0 SRP54-type protein, helical bundle domain ELFV_dehydrog PF00208.21 gi|242399089|ref|YP_002994513.1| - 9.8e-77 257.9 0.6 1.3e-76 257.5 0.6 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|242399089|ref|YP_002994513.1| - 1.4e-53 180.3 0.0 3.1e-53 179.1 0.0 1.6 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|242399089|ref|YP_002994513.1| - 0.00013 21.4 0.1 0.00026 20.4 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SNF PF00209.18 gi|242399090|ref|YP_002994514.1| - 1.2e-51 176.0 34.8 1.5e-28 99.8 14.1 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF1358 PF07096.11 gi|242399091|ref|YP_002994515.1| - 0.055 13.5 0.2 0.055 13.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1358) DUF4515 PF14988.6 gi|242399092|ref|YP_002994516.1| - 0.00061 19.7 0.3 0.0008 19.3 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4515) TINF2_N PF14973.6 gi|242399092|ref|YP_002994516.1| - 0.02 15.3 1.1 0.032 14.6 1.1 1.3 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus DUF4181 PF13789.6 gi|242399092|ref|YP_002994516.1| - 0.98 9.7 6.5 0.83 9.9 2.6 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4181) P-II PF00543.22 gi|242399093|ref|YP_002994517.1| - 4e-29 101.2 1.3 9.1e-29 100.1 1.3 1.5 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II Glyco_hydro_57 PF03065.15 gi|242399094|ref|YP_002994518.1| - 3.2e-77 259.9 8.2 1.5e-76 257.7 8.2 2.2 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1957 PF09210.11 gi|242399094|ref|YP_002994518.1| - 7.3e-31 106.6 4.3 7.5e-30 103.3 0.1 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF1957) DUF1285 PF06938.11 gi|242399094|ref|YP_002994518.1| - 0.01 15.9 0.0 0.01 15.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1285) FRB_dom PF08771.11 gi|242399094|ref|YP_002994518.1| - 0.97 9.9 4.9 1.6 9.2 1.3 2.8 3 0 0 3 3 3 0 FKBP12-rapamycin binding domain Semialdhyde_dhC PF02774.18 gi|242399095|ref|YP_002994519.1| - 3.2e-30 105.6 0.0 5e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|242399095|ref|YP_002994519.1| - 1.9e-27 96.1 0.0 3.7e-27 95.2 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|242399095|ref|YP_002994519.1| - 0.0026 17.9 0.0 0.0046 17.1 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.21 gi|242399095|ref|YP_002994519.1| - 0.0099 15.4 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DXP_reductoisom PF02670.16 gi|242399095|ref|YP_002994519.1| - 0.13 12.9 0.0 0.3 11.8 0.0 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase GARS_N PF02844.15 gi|242399095|ref|YP_002994519.1| - 0.16 12.8 0.0 0.33 11.8 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain GFO_IDH_MocA PF01408.22 gi|242399095|ref|YP_002994519.1| - 0.16 12.8 0.0 0.39 11.5 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold PALP PF00291.25 gi|242399096|ref|YP_002994520.1| - 5.3e-82 275.5 0.2 6.1e-82 275.3 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|242399096|ref|YP_002994520.1| - 0.067 13.4 0.0 41 4.4 0.0 3.1 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GHMP_kinases_C PF08544.13 gi|242399097|ref|YP_002994521.1| - 5.6e-12 45.9 0.0 1e-11 45.0 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|242399097|ref|YP_002994521.1| - 1.6e-11 44.3 0.4 1.6e-11 44.3 0.4 2.3 2 1 0 2 2 2 1 GHMP kinases N terminal domain AA_kinase PF00696.28 gi|242399098|ref|YP_002994522.1| - 2e-43 148.7 0.1 2.5e-43 148.4 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family FbpA PF05833.11 gi|242399100|ref|YP_002994524.1| - 5e-84 282.7 28.2 6.6e-84 282.3 28.2 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|242399100|ref|YP_002994524.1| - 3.6e-29 101.6 0.0 9e-29 100.3 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain H2TH PF06831.14 gi|242399100|ref|YP_002994524.1| - 5.2e-05 23.1 0.0 5.2e-05 23.1 0.0 2.4 3 0 0 3 3 3 1 Formamidopyrimidine-DNA glycosylase H2TH domain Ribosomal_S13 PF00416.22 gi|242399100|ref|YP_002994524.1| - 0.0088 16.4 0.2 0.0088 16.4 0.2 3.4 2 1 2 4 4 4 1 Ribosomal protein S13/S18 LMBR1 PF04791.16 gi|242399100|ref|YP_002994524.1| - 0.24 10.3 10.1 0.35 9.7 10.1 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein FliD_N PF02465.18 gi|242399100|ref|YP_002994524.1| - 0.96 10.2 0.0 0.96 10.2 0.0 3.5 3 1 0 3 3 3 0 Flagellar hook-associated protein 2 N-terminus ACR_tran PF00873.19 gi|242399100|ref|YP_002994524.1| - 4.4 4.8 8.6 6.5 4.2 8.6 1.2 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family Radical_SAM PF04055.21 gi|242399102|ref|YP_002994526.1| - 3.1e-10 40.7 0.0 5.7e-10 39.8 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|242399102|ref|YP_002994526.1| - 1.1e-06 28.8 0.0 2.2e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|242399102|ref|YP_002994526.1| - 0.00022 21.5 0.1 0.00064 20.0 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain tRNA-synt_1 PF00133.22 gi|242399103|ref|YP_002994527.1| - 7.2e-188 625.6 7.2 1.1e-187 625.0 7.2 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|242399103|ref|YP_002994527.1| - 2.5e-37 128.2 2.0 3.2e-37 127.8 0.5 2.0 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|242399103|ref|YP_002994527.1| - 8.4e-25 87.3 4.3 2e-08 33.4 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|242399103|ref|YP_002994527.1| - 8.4e-08 31.9 0.2 3.5e-05 23.3 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|242399103|ref|YP_002994527.1| - 5.5e-05 22.2 0.0 0.028 13.4 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|242399103|ref|YP_002994527.1| - 0.00056 19.5 0.0 0.0022 17.5 0.0 2.1 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DUF4720 PF15846.5 gi|242399103|ref|YP_002994527.1| - 0.0086 15.9 0.0 0.91 9.4 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4720) zf-FPG_IleRS PF06827.14 gi|242399103|ref|YP_002994527.1| - 0.19 11.6 0.1 0.19 11.6 0.1 1.9 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF401 PF04165.12 gi|242399105|ref|YP_002994529.1| - 1.2e-64 219.1 30.8 1.5e-64 218.8 30.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) DUF2615 PF11027.8 gi|242399105|ref|YP_002994529.1| - 0.029 14.5 0.1 0.098 12.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2615) DUF1464 PF07318.12 gi|242399106|ref|YP_002994530.1| - 2e-130 434.8 0.6 2.2e-130 434.6 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) AMNp_N PF10423.9 gi|242399106|ref|YP_002994530.1| - 0.089 12.4 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial AMP nucleoside phosphorylase N-terminus DUF835 PF05763.12 gi|242399108|ref|YP_002994532.1| - 2.8e-30 104.8 0.2 4.2e-30 104.2 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF373 PF04123.13 gi|242399108|ref|YP_002994532.1| - 8.2 5.8 8.9 2.4 7.5 1.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF373) DUF116 PF01976.17 gi|242399109|ref|YP_002994533.1| - 2e-41 141.1 0.2 2.4e-41 140.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 EamA PF00892.20 gi|242399110|ref|YP_002994534.1| - 1e-35 122.9 27.9 1.2e-19 70.9 10.1 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|242399110|ref|YP_002994534.1| - 4.9e-05 22.8 8.7 0.00088 18.7 5.9 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family Fer4_6 PF12837.7 gi|242399111|ref|YP_002994535.1| - 3.6e-13 49.0 33.6 1.1e-05 25.2 3.5 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|242399111|ref|YP_002994535.1| - 9.5e-12 44.3 33.5 1.4e-06 28.1 2.7 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_11 PF13247.6 gi|242399111|ref|YP_002994535.1| - 1.6e-11 44.2 14.0 1.6e-11 44.2 14.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|242399111|ref|YP_002994535.1| - 6e-11 42.8 24.1 4e-07 30.5 12.3 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|242399111|ref|YP_002994535.1| - 1.5e-10 41.1 49.6 1.4e-06 28.4 12.7 2.8 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242399111|ref|YP_002994535.1| - 2.8e-09 36.9 42.1 4.4e-06 26.7 15.2 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|242399111|ref|YP_002994535.1| - 8.7e-09 35.4 28.9 0.00042 20.4 13.2 3.6 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|242399111|ref|YP_002994535.1| - 3.3e-08 33.0 22.1 5.3e-07 29.2 4.8 5.2 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|242399111|ref|YP_002994535.1| - 1.3e-07 31.5 32.1 0.0014 19.0 2.3 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|242399111|ref|YP_002994535.1| - 0.00039 21.2 41.9 0.04 14.9 4.6 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|242399111|ref|YP_002994535.1| - 0.0046 17.9 28.9 0.15 13.0 1.3 4.3 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|242399111|ref|YP_002994535.1| - 0.024 15.2 24.2 0.86 10.2 0.5 4.1 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|242399111|ref|YP_002994535.1| - 0.028 15.0 5.3 0.028 15.0 5.3 4.0 3 2 1 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|242399111|ref|YP_002994535.1| - 0.74 10.3 31.3 17 5.9 9.6 3.8 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|242399111|ref|YP_002994535.1| - 1.6 9.5 23.3 1.8 9.3 9.0 4.1 3 1 0 3 3 3 0 4Fe-4S single cluster domain AFOR_C PF01314.18 gi|242399112|ref|YP_002994536.1| - 9.4e-81 271.7 0.0 1.5e-80 271.1 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|242399112|ref|YP_002994536.1| - 7.6e-61 205.4 0.3 1.1e-60 205.0 0.3 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain OsmC PF02566.19 gi|242399113|ref|YP_002994537.1| - 1.9e-25 89.3 0.0 2.8e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein DUF4978 PF16349.5 gi|242399113|ref|YP_002994537.1| - 0.0044 16.7 0.0 0.0061 16.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4978) DUF4026 PF13218.6 gi|242399113|ref|YP_002994537.1| - 0.14 11.1 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4026) DUF2277 PF10041.9 gi|242399114|ref|YP_002994538.1| - 0.0032 17.8 0.0 0.0041 17.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2277) ThiS PF02597.20 gi|242399115|ref|YP_002994539.1| - 1.9e-10 41.2 0.1 2.1e-10 41.1 0.1 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|242399115|ref|YP_002994539.1| - 0.0069 16.4 0.1 0.044 13.8 0.1 2.0 1 1 0 1 1 1 1 TGS domain Ub-Mut7C PF14451.6 gi|242399115|ref|YP_002994539.1| - 0.013 15.4 0.1 0.019 14.8 0.1 1.3 1 1 0 1 1 1 0 Mut7-C ubiquitin FHA PF00498.26 gi|242399115|ref|YP_002994539.1| - 0.071 13.5 0.0 0.16 12.4 0.0 1.6 1 1 1 2 2 2 0 FHA domain ThiS-like PF14453.6 gi|242399115|ref|YP_002994539.1| - 0.11 12.6 0.1 0.18 11.9 0.1 1.5 1 0 0 1 1 1 0 ThiS-like ubiquitin SH3_1 PF00018.28 gi|242399115|ref|YP_002994539.1| - 0.11 12.1 0.1 5.1 6.8 0.0 2.8 2 1 1 3 3 3 0 SH3 domain RNR_N PF08343.10 gi|242399116|ref|YP_002994540.1| - 0.0019 18.2 0.2 0.0029 17.6 0.2 1.3 1 0 0 1 1 1 1 Ribonucleotide reductase N-terminal Hemocyanin_M PF00372.19 gi|242399116|ref|YP_002994540.1| - 0.019 14.1 0.1 0.02 14.1 0.1 1.1 1 0 0 1 1 1 0 Hemocyanin, copper containing domain Glyco_hydro_57 PF03065.15 gi|242399117|ref|YP_002994541.1| - 8.4e-08 31.8 0.2 8.4e-08 31.8 0.2 2.0 3 0 0 3 3 3 1 Glycosyl hydrolase family 57 tRNA_NucTransf2 PF09249.11 gi|242399118|ref|YP_002994542.1| - 1.3e-36 125.2 0.0 2.5e-36 124.4 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|242399118|ref|YP_002994542.1| - 1.3e-10 41.5 0.2 1.3e-10 41.5 0.2 2.7 4 0 0 4 4 4 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|242399118|ref|YP_002994542.1| - 3e-05 24.3 0.0 5.9e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain LigT_PEase PF02834.16 gi|242399119|ref|YP_002994543.1| - 3e-34 117.1 0.1 1.6e-19 69.9 0.1 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|242399119|ref|YP_002994543.1| - 1.8e-16 60.6 1.3 2.2e-16 60.4 1.3 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.6 gi|242399119|ref|YP_002994543.1| - 2.2e-13 50.4 0.0 2.8e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily PYRIN PF02758.16 gi|242399119|ref|YP_002994543.1| - 0.0036 17.4 1.3 0.12 12.5 0.1 2.9 3 0 0 3 3 3 1 PAAD/DAPIN/Pyrin domain HVSL PF09749.9 gi|242399119|ref|YP_002994543.1| - 0.0067 15.9 0.1 0.01 15.4 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised conserved protein DUF4600 PF15372.6 gi|242399119|ref|YP_002994543.1| - 0.022 15.2 0.6 0.04 14.3 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4600) RBFA PF02033.18 gi|242399119|ref|YP_002994543.1| - 0.035 14.6 1.5 0.12 12.8 0.1 2.4 2 1 1 3 3 3 0 Ribosome-binding factor A DUF2680 PF10925.8 gi|242399119|ref|YP_002994543.1| - 0.072 13.1 0.1 0.072 13.1 0.1 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2680) CbiA PF01656.23 gi|242399119|ref|YP_002994543.1| - 0.1 12.6 0.3 0.15 12.1 0.3 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Phi_1 PF04674.12 gi|242399119|ref|YP_002994543.1| - 0.11 11.8 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Phosphate-induced protein 1 conserved region Pribosyltran PF00156.27 gi|242399120|ref|YP_002994544.1| - 6.5e-27 94.0 0.2 7.9e-27 93.7 0.2 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|242399120|ref|YP_002994544.1| - 0.00021 20.8 0.0 0.00027 20.5 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|242399120|ref|YP_002994544.1| - 0.035 13.6 0.1 0.048 13.2 0.1 1.1 1 0 0 1 1 1 0 Phosphoribosyl transferase Pribosyl_synth PF14572.6 gi|242399120|ref|YP_002994544.1| - 0.042 13.9 1.1 0.056 13.5 1.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain Ribonuc_red_lgC PF02867.15 gi|242399121|ref|YP_002994545.1| - 1.3e-226 753.2 0.0 1.9e-226 752.7 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|242399121|ref|YP_002994545.1| - 1.2e-29 102.2 0.1 3.3e-29 100.7 0.1 1.9 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|242399121|ref|YP_002994545.1| - 1.4e-21 76.8 0.9 4.6e-21 75.2 0.9 2.0 1 0 0 1 1 1 1 ATP cone domain Rubrerythrin PF02915.17 gi|242399122|ref|YP_002994546.1| - 1.8e-10 41.4 5.4 1e-09 38.9 5.1 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|242399122|ref|YP_002994546.1| - 0.0083 16.1 5.4 0.14 12.1 5.5 2.3 1 1 0 1 1 1 1 Ferritin-like domain MiaE PF06175.11 gi|242399122|ref|YP_002994546.1| - 0.015 14.9 0.6 0.018 14.6 0.6 1.1 1 0 0 1 1 1 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) Cation_efflux PF01545.21 gi|242399123|ref|YP_002994547.1| - 5.9e-46 156.7 14.5 7e-46 156.5 14.5 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|242399123|ref|YP_002994547.1| - 1.6e-22 79.4 4.7 3.5e-22 78.3 4.7 1.6 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Asp23 PF03780.13 gi|242399123|ref|YP_002994547.1| - 0.1 13.0 2.7 0.11 13.0 0.3 2.3 2 1 0 2 2 2 0 Asp23 family, cell envelope-related function DUF1576 PF07613.11 gi|242399123|ref|YP_002994547.1| - 0.57 9.7 0.0 0.57 9.7 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1576) PAP2 PF01569.21 gi|242399123|ref|YP_002994547.1| - 8.7 6.1 12.3 0.6 9.9 0.8 3.3 2 2 0 3 3 3 0 PAP2 superfamily Radical_SAM PF04055.21 gi|242399125|ref|YP_002994549.1| - 4.4e-13 49.9 0.6 2.9e-09 37.5 0.3 2.4 1 1 1 2 2 2 2 Radical SAM superfamily Na_Ca_ex PF01699.24 gi|242399126|ref|YP_002994550.1| - 1.2e-48 164.9 37.7 4.7e-27 94.8 14.2 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF3917 PF13055.6 gi|242399126|ref|YP_002994550.1| - 0.013 16.0 1.5 0.013 16.0 1.5 3.8 4 1 1 5 5 5 0 Protein of unknown function (DUF3917) DUF739 PF05339.11 gi|242399126|ref|YP_002994550.1| - 0.032 14.4 0.0 0.99 9.6 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF739) Baculo_LEF-2 PF03041.14 gi|242399126|ref|YP_002994550.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 lef-2 DUF2189 PF09955.9 gi|242399126|ref|YP_002994550.1| - 1.3 9.3 10.6 0.13 12.6 1.4 2.9 3 0 0 3 3 3 0 Predicted integral membrane protein (DUF2189) DeoC PF01791.9 gi|242399127|ref|YP_002994551.1| - 4.6e-21 75.5 4.6 5.3e-21 75.3 4.6 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 gi|242399127|ref|YP_002994551.1| - 0.0005 19.4 2.6 0.00074 18.8 2.2 1.5 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase ECF-ribofla_trS PF07155.12 gi|242399128|ref|YP_002994552.1| - 8.1e-39 133.4 22.4 8.1e-39 133.4 22.4 1.5 1 1 0 1 1 1 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 gi|242399128|ref|YP_002994552.1| - 7.4e-06 26.2 20.7 7.4e-06 26.2 20.7 2.2 1 1 1 2 2 2 2 ECF transporter, substrate-specific component 7TM-7TMR_HD PF07698.11 gi|242399128|ref|YP_002994552.1| - 0.0022 17.8 13.5 0.0031 17.3 13.3 1.3 1 1 0 1 1 1 1 7TM receptor with intracellular HD hydrolase Gemini_mov PF01708.16 gi|242399128|ref|YP_002994552.1| - 0.14 11.9 0.5 0.35 10.7 0.5 1.7 1 0 0 1 1 1 0 Geminivirus putative movement protein DUF4131 PF13567.6 gi|242399128|ref|YP_002994552.1| - 2.3 7.8 6.4 0.58 9.8 2.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Aminotran_3 PF00202.21 gi|242399129|ref|YP_002994553.1| - 3.9e-114 381.4 0.0 4.7e-114 381.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III ComZ PF10815.8 gi|242399129|ref|YP_002994553.1| - 0.85 9.7 3.0 1.5 8.9 0.2 2.4 2 0 0 2 2 2 0 ComZ Pyr_redox_2 PF07992.14 gi|242399130|ref|YP_002994554.1| - 4.7e-57 193.5 1.4 5.4e-57 193.3 1.4 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|242399130|ref|YP_002994554.1| - 1.4e-30 106.6 2.2 1.7e-25 89.9 0.2 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|242399130|ref|YP_002994554.1| - 3.7e-21 75.5 8.2 1.9e-19 70.0 1.8 3.5 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|242399130|ref|YP_002994554.1| - 4.3e-14 52.4 2.0 0.00012 21.3 0.1 4.1 4 0 0 4 4 4 4 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|242399130|ref|YP_002994554.1| - 1.2e-09 37.8 3.8 0.00011 21.5 0.2 4.1 3 1 1 4 4 4 2 FAD binding domain FAD_binding_3 PF01494.19 gi|242399130|ref|YP_002994554.1| - 2.8e-09 36.7 0.1 0.00033 20.0 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|242399130|ref|YP_002994554.1| - 4.5e-08 32.2 0.2 0.0027 16.5 0.1 3.6 4 0 0 4 4 4 2 HI0933-like protein FAD_oxidored PF12831.7 gi|242399130|ref|YP_002994554.1| - 1.1e-07 31.6 1.5 2.3e-05 23.9 0.0 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.24 gi|242399130|ref|YP_002994554.1| - 2.5e-07 30.6 5.5 0.028 14.0 0.6 3.9 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|242399130|ref|YP_002994554.1| - 4.1e-07 30.4 0.3 0.00044 20.7 0.1 3.0 3 1 0 3 3 3 1 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|242399130|ref|YP_002994554.1| - 2.3e-06 27.7 0.2 0.00017 21.8 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|242399130|ref|YP_002994554.1| - 5.7e-06 25.8 0.1 0.001 18.3 0.1 2.4 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.6 gi|242399130|ref|YP_002994554.1| - 1.3e-05 24.5 0.0 0.0054 15.9 0.0 3.2 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|242399130|ref|YP_002994554.1| - 0.00025 20.2 0.4 0.52 9.3 0.1 3.1 3 0 0 3 3 3 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|242399130|ref|YP_002994554.1| - 0.0006 19.2 1.4 0.21 10.8 0.0 2.6 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|242399130|ref|YP_002994554.1| - 0.0017 18.4 0.4 0.26 11.3 0.1 2.9 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase Trp_halogenase PF04820.14 gi|242399130|ref|YP_002994554.1| - 0.0025 16.7 0.4 0.18 10.6 0.1 2.3 2 0 0 2 2 2 1 Tryptophan halogenase PALP PF00291.25 gi|242399130|ref|YP_002994554.1| - 0.0046 16.4 0.2 0.039 13.4 0.1 2.3 2 1 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme XdhC_C PF13478.6 gi|242399130|ref|YP_002994554.1| - 0.0047 17.4 0.0 0.092 13.3 0.0 2.4 2 1 0 2 2 2 1 XdhC Rossmann domain IlvN PF07991.12 gi|242399130|ref|YP_002994554.1| - 0.021 14.4 0.1 0.047 13.3 0.1 1.7 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain FMO-like PF00743.19 gi|242399130|ref|YP_002994554.1| - 0.034 12.6 0.0 0.04 12.3 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Amino_oxidase PF01593.24 gi|242399130|ref|YP_002994554.1| - 0.08 12.2 0.0 0.19 11.0 0.0 1.6 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase YdjM PF04307.14 gi|242399131|ref|YP_002994555.1| - 1e-13 50.9 3.8 1.4e-13 50.5 3.8 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase ATPase_2 PF01637.18 gi|242399132|ref|YP_002994556.1| - 0.00013 21.9 0.7 0.00049 20.1 0.7 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|242399132|ref|YP_002994556.1| - 0.0013 18.6 0.2 0.82 9.6 0.0 3.1 3 0 0 3 3 3 1 NACHT domain AAA PF00004.29 gi|242399132|ref|YP_002994556.1| - 0.0016 18.9 0.6 0.011 16.2 0.6 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|242399132|ref|YP_002994556.1| - 0.0018 18.5 0.0 0.0051 17.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|242399132|ref|YP_002994556.1| - 0.0031 16.9 0.1 0.0058 16.0 0.1 1.4 1 0 0 1 1 1 1 KaiC AAA_16 PF13191.6 gi|242399132|ref|YP_002994556.1| - 0.022 15.2 0.0 0.043 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 gi|242399132|ref|YP_002994556.1| - 0.023 14.7 2.2 0.35 10.9 0.2 2.6 1 1 1 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|242399132|ref|YP_002994556.1| - 0.025 14.1 0.1 0.042 13.4 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|242399132|ref|YP_002994556.1| - 0.026 15.0 0.0 0.051 14.1 0.0 1.7 1 1 0 1 1 1 0 ABC transporter ResIII PF04851.15 gi|242399132|ref|YP_002994556.1| - 0.026 14.5 0.0 0.041 13.9 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_35 PF14516.6 gi|242399132|ref|YP_002994556.1| - 0.038 12.8 0.1 0.061 12.1 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain NB-ARC PF00931.22 gi|242399132|ref|YP_002994556.1| - 0.041 13.1 0.0 0.67 9.1 0.0 2.4 2 1 0 2 2 2 0 NB-ARC domain AAA_10 PF12846.7 gi|242399132|ref|YP_002994556.1| - 0.05 12.5 0.5 0.11 11.4 0.5 1.5 1 1 0 1 1 1 0 AAA-like domain TrmB PF01978.19 gi|242399132|ref|YP_002994556.1| - 0.051 13.5 0.0 0.28 11.1 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB TrwB_AAD_bind PF10412.9 gi|242399132|ref|YP_002994556.1| - 0.054 12.4 0.1 0.11 11.4 0.1 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TniB PF05621.11 gi|242399132|ref|YP_002994556.1| - 0.071 12.5 0.2 0.34 10.3 0.2 2.0 1 1 0 1 1 1 0 Bacterial TniB protein HTH_5 PF01022.20 gi|242399132|ref|YP_002994556.1| - 0.12 12.2 0.0 3 7.8 0.0 2.6 3 0 0 3 3 2 0 Bacterial regulatory protein, arsR family DUF815 PF05673.13 gi|242399132|ref|YP_002994556.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) THUMP PF02926.17 gi|242399133|ref|YP_002994557.1| - 3.8e-17 62.7 1.7 5.3e-17 62.3 1.7 1.2 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|242399134|ref|YP_002994558.1| - 2.3e-62 210.2 0.0 2.7e-62 210.0 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|242399134|ref|YP_002994558.1| - 2e-06 27.7 0.0 0.00014 21.7 0.0 2.1 2 0 0 2 2 2 1 PP-loop family ThiI PF02568.14 gi|242399134|ref|YP_002994558.1| - 1.2e-05 25.0 0.0 0.039 13.5 0.0 2.3 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 gi|242399134|ref|YP_002994558.1| - 4.1e-05 23.0 0.0 6.2e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase Diphthami_syn_2 PF01902.17 gi|242399134|ref|YP_002994558.1| - 0.0013 18.2 0.0 0.0022 17.5 0.0 1.3 1 0 0 1 1 1 1 Diphthamide synthase Asn_synthase PF00733.21 gi|242399134|ref|YP_002994558.1| - 0.014 15.1 0.0 0.018 14.7 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.19 gi|242399134|ref|YP_002994558.1| - 0.023 14.8 0.0 0.045 13.8 0.0 1.8 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|242399134|ref|YP_002994558.1| - 0.041 12.7 0.0 0.059 12.2 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase Phage_int_SAM_5 PF13102.6 gi|242399134|ref|YP_002994558.1| - 0.13 12.6 0.1 2.3 8.6 0.0 2.1 2 0 0 2 2 2 0 Phage integrase SAM-like domain DUF5305 PF17231.2 gi|242399138|ref|YP_002994562.1| - 0.061 12.7 0.1 0.061 12.7 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5305) DUF99 PF01949.16 gi|242399140|ref|YP_002994564.1| - 7.5e-64 214.5 0.3 8.4e-64 214.3 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF243 PF03103.17 gi|242399140|ref|YP_002994564.1| - 0.093 13.1 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF243) CutA1 PF03091.15 gi|242399141|ref|YP_002994565.1| - 5.3e-32 109.6 0.2 5.9e-32 109.5 0.2 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Acylphosphatase PF00708.18 gi|242399142|ref|YP_002994566.1| - 1.4e-26 92.7 0.1 1.5e-26 92.6 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF460 PF04312.13 gi|242399144|ref|YP_002994568.1| - 6.2e-49 165.3 0.1 1.9e-48 163.7 0.1 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|242399144|ref|YP_002994568.1| - 2.5e-05 24.6 0.0 6.3e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor TSC22 PF01166.18 gi|242399144|ref|YP_002994568.1| - 1.3 9.4 9.5 0.26 11.6 3.5 3.1 2 1 0 2 2 2 0 TSC-22/dip/bun family SlyX PF04102.12 gi|242399144|ref|YP_002994568.1| - 1.9 9.2 16.5 0.3 11.8 6.2 3.8 3 1 1 4 4 4 0 SlyX Radical_SAM PF04055.21 gi|242399146|ref|YP_002994570.1| - 1.1e-11 45.4 0.1 2e-11 44.5 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DZR PF12773.7 gi|242399146|ref|YP_002994570.1| - 0.0024 17.9 0.2 0.0024 17.9 0.2 3.1 3 0 0 3 3 3 1 Double zinc ribbon DiS_P_DiS PF06750.13 gi|242399146|ref|YP_002994570.1| - 0.0085 16.2 0.1 0.0085 16.2 0.1 1.9 2 0 0 2 2 2 1 Bacterial Peptidase A24 N-terminal domain ADK_lid PF05191.14 gi|242399146|ref|YP_002994570.1| - 0.018 15.0 0.8 0.94 9.5 0.0 3.4 3 0 0 3 3 3 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.6 gi|242399146|ref|YP_002994570.1| - 0.15 11.8 5.7 1.6 8.5 0.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain CoiA PF06054.11 gi|242399146|ref|YP_002994570.1| - 0.17 11.0 0.1 0.17 11.0 0.1 2.1 3 0 0 3 3 2 0 Competence protein CoiA-like family zf-C4_Topoisom PF01396.19 gi|242399146|ref|YP_002994570.1| - 0.2 11.5 0.0 0.2 11.5 0.0 4.1 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|242399146|ref|YP_002994570.1| - 0.33 10.4 0.1 0.33 10.4 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|242399146|ref|YP_002994570.1| - 0.69 10.0 5.9 0.098 12.7 0.8 2.3 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf_UBZ PF18439.1 gi|242399146|ref|YP_002994570.1| - 1.2 8.8 5.7 3.2 7.4 0.2 3.1 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger UPF0547 PF10571.9 gi|242399146|ref|YP_002994570.1| - 1.6 8.9 10.7 0.43 10.7 1.5 3.4 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|242399146|ref|YP_002994570.1| - 6.4 7.0 9.2 2.8 8.1 0.0 3.6 4 0 0 4 4 4 0 Zinc ribbon domain DUF2039 PF10217.9 gi|242399146|ref|YP_002994570.1| - 7.7 6.9 9.4 0.62 10.4 1.0 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2039) ATP_bind_3 PF01171.20 gi|242399147|ref|YP_002994571.1| - 6.1e-16 58.7 0.0 1.4e-15 57.5 0.0 1.7 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|242399147|ref|YP_002994571.1| - 9.7e-05 22.5 0.0 0.00024 21.2 0.0 1.7 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|242399147|ref|YP_002994571.1| - 0.00038 19.4 0.0 0.0007 18.5 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase CTU2 PF10288.9 gi|242399147|ref|YP_002994571.1| - 0.0088 16.3 1.2 0.088 13.0 0.1 2.9 3 1 0 3 3 3 1 Cytoplasmic tRNA 2-thiolation protein 2 QueC PF06508.13 gi|242399147|ref|YP_002994571.1| - 0.01 15.4 0.0 0.022 14.3 0.0 1.7 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|242399147|ref|YP_002994571.1| - 0.01 15.0 0.0 0.018 14.2 0.0 1.4 1 0 0 1 1 1 0 NAD synthase Asn_synthase PF00733.21 gi|242399147|ref|YP_002994571.1| - 0.021 14.5 0.0 0.056 13.1 0.0 1.6 2 0 0 2 2 2 0 Asparagine synthase zn-ribbon_14 PF16503.5 gi|242399147|ref|YP_002994571.1| - 0.032 13.7 1.2 0.032 13.7 1.2 2.8 3 0 0 3 3 3 0 Zinc-ribbon zf-trcl PF13451.6 gi|242399147|ref|YP_002994571.1| - 0.07 13.0 0.9 0.07 13.0 0.9 2.6 4 0 0 4 4 4 0 Probable zinc-ribbon domain C1_2 PF03107.16 gi|242399147|ref|YP_002994571.1| - 0.086 13.2 0.3 0.086 13.2 0.3 3.0 3 0 0 3 3 3 0 C1 domain zinc_ribbon_2 PF13240.6 gi|242399147|ref|YP_002994571.1| - 5.4 6.9 8.1 6.4 6.6 0.5 3.3 3 0 0 3 3 3 0 zinc-ribbon domain RecR PF02132.15 gi|242399147|ref|YP_002994571.1| - 9.4 5.9 11.1 0.66 9.6 1.8 2.7 3 0 0 3 3 3 0 RecR protein Spore_permease PF03845.13 gi|242399148|ref|YP_002994572.1| - 0.00018 20.4 0.1 0.00021 20.3 0.1 1.0 1 0 0 1 1 1 1 Spore germination protein DUF948 PF06103.11 gi|242399148|ref|YP_002994572.1| - 0.0021 18.3 0.5 0.0024 18.1 0.5 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DivIC PF04977.15 gi|242399148|ref|YP_002994572.1| - 0.0069 16.1 1.3 0.0084 15.9 1.3 1.1 1 0 0 1 1 1 1 Septum formation initiator DLP_helical PF18709.1 gi|242399148|ref|YP_002994572.1| - 0.016 14.4 0.1 0.018 14.3 0.1 1.0 1 0 0 1 1 1 0 Dynamin-like helical domain betaPIX_CC PF16523.5 gi|242399148|ref|YP_002994572.1| - 0.018 14.9 1.5 0.022 14.6 1.5 1.1 1 0 0 1 1 1 0 betaPIX coiled coil DUF4064 PF13273.6 gi|242399148|ref|YP_002994572.1| - 0.018 15.3 0.0 0.022 15.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) DUF3139 PF11337.8 gi|242399148|ref|YP_002994572.1| - 0.019 15.6 0.6 0.022 15.4 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) Cytomega_TRL10 PF06084.11 gi|242399148|ref|YP_002994572.1| - 0.026 14.5 0.0 0.028 14.4 0.0 1.0 1 0 0 1 1 1 0 Cytomegalovirus TRL10 protein PEP-utilisers_N PF05524.13 gi|242399148|ref|YP_002994572.1| - 0.041 14.0 0.0 0.041 14.0 0.0 1.1 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal ABC_membrane PF00664.23 gi|242399148|ref|YP_002994572.1| - 0.045 13.4 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 ABC transporter transmembrane region SecD-TM1 PF13721.6 gi|242399148|ref|YP_002994572.1| - 0.06 13.8 0.1 0.063 13.7 0.1 1.1 1 0 0 1 1 1 0 SecD export protein N-terminal TM region DUF2207 PF09972.9 gi|242399148|ref|YP_002994572.1| - 0.062 12.1 0.0 0.065 12.0 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Spc29 PF17082.5 gi|242399148|ref|YP_002994572.1| - 0.066 13.0 0.5 0.075 12.9 0.5 1.0 1 0 0 1 1 1 0 Spindle Pole Component 29 FeoB_associated PF12669.7 gi|242399148|ref|YP_002994572.1| - 0.069 13.6 0.8 0.099 13.1 0.8 1.2 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein CAMSAP_CC1 PF17095.5 gi|242399148|ref|YP_002994572.1| - 0.085 12.7 2.7 0.1 12.5 2.7 1.2 1 0 0 1 1 1 0 Spectrin-binding region of Ca2+-Calmodulin Cpta_toxin PF07254.12 gi|242399148|ref|YP_002994572.1| - 0.091 12.8 0.0 0.099 12.6 0.0 1.1 1 0 0 1 1 1 0 Membrane-bound toxin component of toxin-antitoxin system FlaC_arch PF05377.11 gi|242399148|ref|YP_002994572.1| - 0.1 13.0 2.9 0.13 12.7 2.9 1.2 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF4381 PF14316.6 gi|242399148|ref|YP_002994572.1| - 0.11 12.8 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Bap31_Bap29_C PF18035.1 gi|242399148|ref|YP_002994572.1| - 0.16 12.0 3.7 0.2 11.7 3.7 1.2 1 0 0 1 1 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain WXG100 PF06013.12 gi|242399148|ref|YP_002994572.1| - 0.16 12.2 0.1 0.18 12.0 0.1 1.1 1 0 0 1 1 1 0 Proteins of 100 residues with WXG SNARE PF05739.19 gi|242399148|ref|YP_002994572.1| - 0.43 10.6 4.7 4.7 7.3 1.2 2.1 2 0 0 2 2 2 0 SNARE domain DUF2570 PF10828.8 gi|242399148|ref|YP_002994572.1| - 7.5 6.4 6.9 39 4.1 7.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) HTH_5 PF01022.20 gi|242399149|ref|YP_002994573.1| - 4.9e-14 51.9 0.2 8.2e-14 51.2 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|242399149|ref|YP_002994573.1| - 1.9e-13 50.2 0.0 2.7e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|242399149|ref|YP_002994573.1| - 1.1e-07 31.7 0.1 1.5e-07 31.2 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|242399149|ref|YP_002994573.1| - 2.3e-06 27.5 1.8 9e-06 25.6 1.8 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|242399149|ref|YP_002994573.1| - 1.5e-05 24.8 0.5 1.5e-05 24.8 0.5 1.5 2 0 0 2 2 1 1 HTH domain HTH_24 PF13412.6 gi|242399149|ref|YP_002994573.1| - 0.00011 21.7 2.2 0.00059 19.3 0.2 2.4 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|242399149|ref|YP_002994573.1| - 0.00014 22.0 0.1 0.00018 21.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|242399149|ref|YP_002994573.1| - 0.00046 20.0 0.0 0.00074 19.4 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|242399149|ref|YP_002994573.1| - 0.00049 19.9 0.0 0.00067 19.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_26 PF13443.6 gi|242399149|ref|YP_002994573.1| - 0.0014 19.0 0.1 0.43 11.0 0.1 2.2 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain Rrf2 PF02082.20 gi|242399149|ref|YP_002994573.1| - 0.0025 18.1 0.3 0.0082 16.5 0.1 1.7 1 1 1 2 2 2 1 Transcriptional regulator HTH_41 PF14502.6 gi|242399149|ref|YP_002994573.1| - 0.0036 17.0 0.3 0.031 13.9 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Mga PF05043.13 gi|242399149|ref|YP_002994573.1| - 0.0042 17.6 0.1 0.0051 17.4 0.1 1.2 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_23 PF13384.6 gi|242399149|ref|YP_002994573.1| - 0.0047 16.7 0.2 0.0087 15.8 0.2 1.5 1 1 0 1 1 1 1 Homeodomain-like domain HxlR PF01638.17 gi|242399149|ref|YP_002994573.1| - 0.0056 16.5 0.3 0.0072 16.1 0.3 1.3 1 1 0 1 1 1 1 HxlR-like helix-turn-helix B-block_TFIIIC PF04182.12 gi|242399149|ref|YP_002994573.1| - 0.0093 16.1 0.1 0.018 15.2 0.1 1.4 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_28 PF13518.6 gi|242399149|ref|YP_002994573.1| - 0.016 15.3 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.11 gi|242399149|ref|YP_002994573.1| - 0.018 14.6 0.0 0.049 13.2 0.0 1.7 2 0 0 2 2 2 0 CodY helix-turn-helix domain BLACT_WH PF17778.1 gi|242399149|ref|YP_002994573.1| - 0.02 14.9 0.2 0.036 14.1 0.2 1.4 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain TFIIE_alpha PF02002.17 gi|242399149|ref|YP_002994573.1| - 0.024 14.5 0.7 0.028 14.3 0.7 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2250 PF10007.9 gi|242399149|ref|YP_002994573.1| - 0.024 14.7 0.1 0.032 14.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.12 gi|242399149|ref|YP_002994573.1| - 0.048 13.5 0.1 0.11 12.3 0.0 1.6 2 0 0 2 2 1 0 HTH DNA binding domain ArsR PF09824.9 gi|242399149|ref|YP_002994573.1| - 0.049 13.2 0.1 0.055 13.1 0.1 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_29 PF13551.6 gi|242399149|ref|YP_002994573.1| - 0.068 13.2 0.0 0.093 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_1 PF01527.20 gi|242399149|ref|YP_002994573.1| - 0.088 13.1 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 Transposase GntR PF00392.21 gi|242399149|ref|YP_002994573.1| - 0.097 12.3 0.2 0.24 11.1 0.2 1.6 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|242399149|ref|YP_002994573.1| - 0.19 11.7 2.5 2.3 8.2 2.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain DUF2202 PF09968.9 gi|242399150|ref|YP_002994574.1| - 3.5e-63 212.3 1.5 4.1e-63 212.1 1.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Rubrerythrin PF02915.17 gi|242399150|ref|YP_002994574.1| - 0.015 15.7 0.0 0.029 14.8 0.0 1.6 1 1 0 1 1 1 0 Rubrerythrin DnaB_2 PF07261.11 gi|242399150|ref|YP_002994574.1| - 0.063 13.0 0.3 1.3 8.8 0.1 2.8 2 1 1 3 3 3 0 Replication initiation and membrane attachment DUF3231 PF11553.8 gi|242399150|ref|YP_002994574.1| - 0.16 11.6 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) DUF4405 PF14358.6 gi|242399151|ref|YP_002994575.1| - 7.8e-14 52.0 3.2 7.8e-14 52.0 3.2 2.3 2 1 1 3 3 3 1 Domain of unknown function (DUF4405) IF2_N PF04760.15 gi|242399151|ref|YP_002994575.1| - 6.8e-07 29.0 0.2 9.8e-06 25.3 0.0 2.7 2 1 1 3 3 3 1 Translation initiation factor IF-2, N-terminal region OppC_N PF12911.7 gi|242399151|ref|YP_002994575.1| - 2.9 7.9 4.2 3.3 7.7 0.0 2.7 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF2202 PF09968.9 gi|242399152|ref|YP_002994576.1| - 1.3e-66 223.4 0.6 1.7e-66 223.1 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) ATPase PF06745.13 gi|242399154|ref|YP_002994578.1| - 3.1e-06 26.7 0.2 8.2e-06 25.3 0.0 1.7 2 0 0 2 2 2 1 KaiC FKBP26_C PF18046.1 gi|242399154|ref|YP_002994578.1| - 0.057 13.5 0.2 15 5.8 0.0 2.7 2 0 0 2 2 2 0 FKBP26_C-terminal LDcluster4 PF18306.1 gi|242399155|ref|YP_002994579.1| - 3.3e-32 111.2 0.2 3.7e-32 111.1 0.2 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|242399155|ref|YP_002994579.1| - 1.4e-08 34.9 0.9 4.8e-07 29.9 0.2 2.2 1 1 1 2 2 2 2 Possible lysine decarboxylase TPALS PF18178.1 gi|242399155|ref|YP_002994579.1| - 0.0036 16.8 1.0 0.7 9.3 0.4 2.5 1 1 0 2 2 2 2 TIR- and PNP-associating SLOG family LSDAT_prok PF18171.1 gi|242399155|ref|YP_002994579.1| - 0.0073 15.6 0.1 0.3 10.3 0.0 2.0 2 0 0 2 2 2 2 SLOG in TRPM, prokaryote SPOUT_MTase_2 PF14419.6 gi|242399155|ref|YP_002994579.1| - 0.033 13.6 0.0 0.059 12.7 0.0 1.4 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP Peptidase_M50 PF02163.22 gi|242399156|ref|YP_002994580.1| - 7.1e-21 74.6 6.3 2.3e-20 72.9 5.6 2.0 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|242399156|ref|YP_002994580.1| - 3.6e-09 36.8 0.0 5.9e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|242399156|ref|YP_002994580.1| - 7.1e-06 25.8 0.0 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|242399156|ref|YP_002994580.1| - 2.2e-05 24.7 0.2 4.1e-05 23.9 0.2 1.4 1 0 0 1 1 1 1 PDZ domain PDZ_1 PF12812.7 gi|242399156|ref|YP_002994580.1| - 0.089 12.8 0.0 0.26 11.3 0.0 1.7 2 0 0 2 2 2 0 PDZ-like domain Maff2 PF12750.7 gi|242399156|ref|YP_002994580.1| - 0.94 9.4 5.4 1.3 8.9 0.2 3.1 3 0 0 3 3 3 0 Maff2 family BPL_LplA_LipB PF03099.19 gi|242399157|ref|YP_002994581.1| - 4.9e-12 45.9 0.0 8.8e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Peptidase_S24 PF00717.23 gi|242399158|ref|YP_002994582.1| - 1.7e-07 31.1 0.1 4.2e-07 29.8 0.1 1.8 1 0 0 1 1 1 1 Peptidase S24-like DUF531 PF04407.12 gi|242399159|ref|YP_002994583.1| - 2.5e-77 258.8 0.0 2.9e-77 258.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.6 gi|242399159|ref|YP_002994583.1| - 0.00094 18.6 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP SpoU_methylase PF00588.19 gi|242399159|ref|YP_002994583.1| - 0.19 11.9 0.0 0.44 10.7 0.0 1.6 1 1 0 1 1 1 0 SpoU rRNA Methylase family TPR_12 PF13424.6 gi|242399160|ref|YP_002994584.1| - 6.7e-05 23.1 1.1 7.1 7.0 0.0 5.2 2 1 5 7 7 7 2 Tetratricopeptide repeat ThrE PF06738.12 gi|242399160|ref|YP_002994584.1| - 0.0048 16.3 0.0 0.008 15.6 0.0 1.3 1 0 0 1 1 1 1 Putative threonine/serine exporter Gemini_V2 PF01524.17 gi|242399160|ref|YP_002994584.1| - 0.0093 16.1 0.2 5.5 7.3 0.0 2.6 2 0 0 2 2 2 2 Geminivirus V2 protein Cullin_Nedd8 PF10557.9 gi|242399160|ref|YP_002994584.1| - 0.045 13.8 1.2 0.1 12.7 0.0 2.2 2 0 0 2 2 2 0 Cullin protein neddylation domain TPR_19 PF14559.6 gi|242399160|ref|YP_002994584.1| - 0.053 14.0 2.8 5.5 7.6 0.0 4.0 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|242399160|ref|YP_002994584.1| - 0.088 12.7 4.3 35 4.4 0.1 4.5 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|242399160|ref|YP_002994584.1| - 0.088 13.0 7.6 29 5.1 0.0 5.2 5 1 1 6 6 6 0 Tetratricopeptide repeat LUC7 PF03194.15 gi|242399160|ref|YP_002994584.1| - 0.12 12.0 0.0 0.42 10.2 0.0 1.9 1 1 1 2 2 2 0 LUC7 N_terminus PPR PF01535.20 gi|242399160|ref|YP_002994584.1| - 0.27 11.6 5.9 7.5 7.0 0.0 5.3 6 1 1 7 7 7 0 PPR repeat Peptidase_M19 PF01244.21 gi|242399161|ref|YP_002994585.1| - 2.3e-93 312.8 0.0 2.6e-93 312.7 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Methyltransf_25 PF13649.6 gi|242399162|ref|YP_002994586.1| - 2.3e-09 37.8 0.0 4.2e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|242399162|ref|YP_002994586.1| - 2.8e-08 34.3 0.0 5.6e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|242399162|ref|YP_002994586.1| - 6.5e-07 29.0 0.0 1.1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|242399162|ref|YP_002994586.1| - 1.1e-06 28.3 0.0 1.9e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|242399162|ref|YP_002994586.1| - 1.5e-06 28.0 0.0 2.1e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|242399162|ref|YP_002994586.1| - 2.4e-06 27.4 0.0 4.1e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.17 gi|242399162|ref|YP_002994586.1| - 1.9e-05 24.1 0.0 3.3e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_30 PF05430.11 gi|242399162|ref|YP_002994586.1| - 4.8e-05 23.2 0.0 0.0001 22.2 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Met_10 PF02475.16 gi|242399162|ref|YP_002994586.1| - 0.00021 21.1 0.1 0.00063 19.5 0.0 1.7 2 0 0 2 2 2 1 Met-10+ like-protein RrnaAD PF00398.20 gi|242399162|ref|YP_002994586.1| - 0.0016 17.6 0.0 0.0022 17.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 gi|242399162|ref|YP_002994586.1| - 0.0017 17.7 0.0 0.025 13.9 0.0 2.2 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family N6_N4_Mtase PF01555.18 gi|242399162|ref|YP_002994586.1| - 0.0057 16.4 0.1 0.55 9.9 0.0 2.8 3 0 0 3 3 3 1 DNA methylase Methyltransf_23 PF13489.6 gi|242399162|ref|YP_002994586.1| - 0.012 15.4 0.0 0.023 14.6 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain SAM_MT PF04445.13 gi|242399162|ref|YP_002994586.1| - 0.021 14.2 0.0 0.051 13.0 0.0 1.6 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase UPF0020 PF01170.18 gi|242399162|ref|YP_002994586.1| - 0.043 13.5 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltr_RsmB-F PF01189.17 gi|242399162|ref|YP_002994586.1| - 0.051 13.2 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_24 PF13578.6 gi|242399162|ref|YP_002994586.1| - 0.11 13.5 0.0 0.2 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Palm_thioest PF02089.15 gi|242399162|ref|YP_002994586.1| - 0.17 11.7 0.0 0.39 10.5 0.0 1.6 1 0 0 1 1 1 0 Palmitoyl protein thioesterase AIRS_C PF02769.22 gi|242399163|ref|YP_002994587.1| - 5.6e-17 62.3 0.0 9.3e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|242399163|ref|YP_002994587.1| - 2.6e-14 53.6 0.0 5.4e-14 52.6 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain eRF1_1 PF03463.15 gi|242399164|ref|YP_002994588.1| - 1.3e-32 112.5 1.1 2.5e-32 111.6 1.1 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|242399164|ref|YP_002994588.1| - 1.8e-23 83.1 3.0 1.8e-23 83.1 3.0 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|242399164|ref|YP_002994588.1| - 5.3e-15 55.9 0.1 1.2e-14 54.7 0.1 1.6 1 0 0 1 1 1 1 eRF1 domain 2 baeRF_family12 PF18856.1 gi|242399164|ref|YP_002994588.1| - 0.004 17.7 0.6 0.023 15.3 0.1 2.3 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 12 baeRF_family10 PF18854.1 gi|242399164|ref|YP_002994588.1| - 0.018 15.3 1.5 0.035 14.4 0.2 2.2 2 1 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 IQ_SEC7_PH PF16453.5 gi|242399164|ref|YP_002994588.1| - 0.037 14.0 0.8 0.38 10.7 0.8 2.3 1 1 0 1 1 1 0 PH domain Ribosomal_L15e PF00827.17 gi|242399165|ref|YP_002994589.1| - 6.6e-88 293.4 7.3 7.5e-88 293.3 7.3 1.0 1 0 0 1 1 1 1 Ribosomal L15 DUF1548 PF07579.11 gi|242399166|ref|YP_002994590.1| - 0.034 14.5 0.1 0.067 13.5 0.1 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1548) SQHop_cyclase_C PF13243.6 gi|242399167|ref|YP_002994591.1| - 2.7e-09 36.6 0.0 5.6e-07 29.0 0.0 2.3 2 0 0 2 2 2 2 Squalene-hopene cyclase C-terminal domain Baculo_11_kDa PF06143.11 gi|242399167|ref|YP_002994591.1| - 0.12 11.9 0.2 0.28 10.8 0.2 1.6 1 0 0 1 1 1 0 Baculovirus 11 kDa family RNA_binding PF01877.17 gi|242399169|ref|YP_002994593.1| - 2.3e-39 134.3 0.8 2.9e-39 134.0 0.8 1.1 1 0 0 1 1 1 1 RNA binding DUF3552 PF12072.8 gi|242399169|ref|YP_002994593.1| - 0.0048 16.3 0.2 0.0072 15.8 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) RNase_P_p30 PF01876.16 gi|242399170|ref|YP_002994594.1| - 4.5e-34 117.8 0.0 5.2e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 Ribosomal_L29 PF00831.23 gi|242399170|ref|YP_002994594.1| - 0.078 13.0 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Ribosomal L29 protein DUF835 PF05763.12 gi|242399171|ref|YP_002994595.1| - 1.2e-32 112.5 1.6 1.9e-32 111.8 1.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) PNMA PF14893.6 gi|242399172|ref|YP_002994596.1| - 0.26 10.6 0.0 0.41 10.0 0.0 1.2 1 0 0 1 1 1 0 PNMA AMP-binding PF00501.28 gi|242399173|ref|YP_002994597.1| - 6e-08 31.7 0.0 1.1e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|242399173|ref|YP_002994597.1| - 0.0025 16.7 0.0 0.18 10.7 0.0 2.1 2 0 0 2 2 2 2 GH3 auxin-responsive promoter HD PF01966.22 gi|242399174|ref|YP_002994598.1| - 2.5e-16 60.0 1.0 2.5e-16 60.0 1.0 2.2 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|242399174|ref|YP_002994598.1| - 0.0041 16.6 0.0 0.0077 15.7 0.0 1.4 1 0 0 1 1 1 1 HDOD domain HTH_3 PF01381.22 gi|242399175|ref|YP_002994599.1| - 1.4e-11 44.3 0.7 3.7e-11 42.9 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|242399175|ref|YP_002994599.1| - 2.1e-10 40.8 0.2 9.9e-10 38.6 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|242399175|ref|YP_002994599.1| - 5e-07 29.6 0.2 3e-06 27.2 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|242399175|ref|YP_002994599.1| - 0.00038 20.6 0.0 0.025 14.8 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|242399175|ref|YP_002994599.1| - 0.004 17.1 0.0 0.015 15.2 0.0 2.0 1 0 0 1 1 1 1 HTH domain HTH_26 PF13443.6 gi|242399175|ref|YP_002994599.1| - 0.0053 17.2 0.0 0.016 15.6 0.0 1.9 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MerR PF00376.23 gi|242399175|ref|YP_002994599.1| - 0.0058 16.4 0.0 0.016 15.0 0.0 1.8 1 0 0 1 1 1 1 MerR family regulatory protein HTH_25 PF13413.6 gi|242399175|ref|YP_002994599.1| - 0.0062 16.4 0.3 0.015 15.1 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|242399175|ref|YP_002994599.1| - 0.0081 15.9 0.1 0.031 14.1 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain YdaS_antitoxin PF15943.5 gi|242399175|ref|YP_002994599.1| - 0.015 15.2 0.0 0.16 11.9 0.0 2.4 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_8 PF02954.19 gi|242399175|ref|YP_002994599.1| - 0.015 15.1 0.0 0.077 12.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_28 PF13518.6 gi|242399175|ref|YP_002994599.1| - 0.019 15.1 0.0 0.41 10.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1870 PF08965.10 gi|242399175|ref|YP_002994599.1| - 0.023 14.7 0.0 0.077 13.0 0.0 2.0 1 1 2 3 3 3 0 Domain of unknown function (DUF1870) MerR_1 PF13411.6 gi|242399175|ref|YP_002994599.1| - 0.026 14.6 0.1 0.1 12.7 0.0 2.1 2 0 0 2 2 2 0 MerR HTH family regulatory protein GP3_package PF16677.5 gi|242399175|ref|YP_002994599.1| - 0.053 13.7 0.6 0.31 11.2 0.2 2.5 2 1 0 2 2 1 0 DNA-packaging protein gp3 YcxB PF14317.6 gi|242399175|ref|YP_002994599.1| - 0.081 12.6 0.4 0.21 11.3 0.1 1.8 2 0 0 2 2 2 0 YcxB-like protein Sigma70_r4_2 PF08281.12 gi|242399175|ref|YP_002994599.1| - 0.44 10.3 0.0 0.44 10.3 0.0 3.0 4 0 0 4 4 4 0 Sigma-70, region 4 DUF1743 PF08489.11 gi|242399176|ref|YP_002994600.1| - 3.1e-39 133.6 0.0 8.5e-39 132.2 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|242399176|ref|YP_002994600.1| - 5.9e-09 35.8 0.1 1.4e-08 34.6 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|242399176|ref|YP_002994600.1| - 0.00023 21.3 0.0 0.00048 20.3 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TF_Zn_Ribbon PF08271.12 gi|242399176|ref|YP_002994600.1| - 0.013 15.0 0.8 0.027 14.0 0.8 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|242399176|ref|YP_002994600.1| - 0.014 15.4 1.0 0.022 14.7 1.0 1.2 1 0 0 1 1 1 0 zinc-ribbons HIN PF02760.15 gi|242399176|ref|YP_002994600.1| - 0.09 12.5 0.1 0.25 11.0 0.0 1.7 2 0 0 2 2 2 0 HIN-200/IF120x domain IBR PF01485.21 gi|242399176|ref|YP_002994600.1| - 0.24 11.7 3.3 0.42 10.9 3.3 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Zn_Tnp_IS1595 PF12760.7 gi|242399176|ref|YP_002994600.1| - 0.64 10.0 4.0 1.4 9.0 4.0 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|242399176|ref|YP_002994600.1| - 1 9.3 3.8 2 8.4 3.8 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain YdjO PF14169.6 gi|242399176|ref|YP_002994600.1| - 3.6 7.4 5.5 3.5 7.4 2.3 2.2 1 1 1 2 2 2 0 Cold-inducible protein YdjO RNA_POL_M_15KD PF02150.16 gi|242399176|ref|YP_002994600.1| - 3.7 7.5 6.5 7.9 6.4 6.5 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Lyase_1 PF00206.20 gi|242399177|ref|YP_002994601.1| - 1.6e-58 198.5 1.2 2.3e-58 198.0 1.2 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|242399177|ref|YP_002994601.1| - 4.9e-21 75.1 0.3 8.5e-20 71.1 0.1 2.5 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|242399177|ref|YP_002994601.1| - 3.8e-07 30.2 0.2 1.3e-06 28.5 0.2 1.9 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal SafA PF17073.5 gi|242399177|ref|YP_002994601.1| - 0.028 14.4 0.2 0.063 13.2 0.2 1.6 1 0 0 1 1 1 0 Two-component-system connector protein ASL_C2 PF14698.6 gi|242399177|ref|YP_002994601.1| - 0.096 13.5 0.1 0.98 10.2 0.0 2.7 3 0 0 3 3 3 0 Argininosuccinate lyase C-terminal Alba PF01918.21 gi|242399178|ref|YP_002994602.1| - 2.2e-20 72.2 0.8 2.8e-20 71.9 0.8 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|242399178|ref|YP_002994602.1| - 0.004 17.1 0.1 0.0049 16.8 0.1 1.3 1 0 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P HTH_20 PF12840.7 gi|242399179|ref|YP_002994603.1| - 5.8e-13 48.7 0.0 1.1e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|242399179|ref|YP_002994603.1| - 6.6e-10 38.7 0.1 1.7e-09 37.4 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|242399179|ref|YP_002994603.1| - 3.9e-09 35.9 0.1 9e-09 34.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|242399179|ref|YP_002994603.1| - 1e-06 28.5 0.4 3.2e-06 26.9 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|242399179|ref|YP_002994603.1| - 1.9e-05 24.5 0.1 3.5e-05 23.6 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|242399179|ref|YP_002994603.1| - 2.1e-05 24.3 0.0 4e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|242399179|ref|YP_002994603.1| - 2.5e-05 24.0 0.0 6e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_40 PF14493.6 gi|242399179|ref|YP_002994603.1| - 0.00034 21.0 0.1 0.00086 19.7 0.1 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|242399179|ref|YP_002994603.1| - 0.0019 17.7 0.0 0.0043 16.5 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|242399179|ref|YP_002994603.1| - 0.002 17.8 0.1 0.0049 16.5 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 DUF742 PF05331.11 gi|242399179|ref|YP_002994603.1| - 0.0026 17.5 0.0 0.0049 16.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF742) GerE PF00196.19 gi|242399179|ref|YP_002994603.1| - 0.0027 17.2 0.0 0.0063 16.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|242399179|ref|YP_002994603.1| - 0.0027 17.4 0.0 0.0064 16.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|242399179|ref|YP_002994603.1| - 0.0028 17.8 0.1 0.0058 16.8 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|242399179|ref|YP_002994603.1| - 0.0041 17.0 0.1 0.011 15.6 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_10 PF04967.12 gi|242399179|ref|YP_002994603.1| - 0.0047 16.7 0.2 0.013 15.3 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain PCI PF01399.27 gi|242399179|ref|YP_002994603.1| - 0.0051 17.3 0.2 0.013 16.0 0.2 1.6 1 0 0 1 1 1 1 PCI domain HTH_23 PF13384.6 gi|242399179|ref|YP_002994603.1| - 0.0063 16.3 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.20 gi|242399179|ref|YP_002994603.1| - 0.01 16.2 0.1 0.02 15.2 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.6 gi|242399179|ref|YP_002994603.1| - 0.022 14.8 0.1 0.045 13.8 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|242399179|ref|YP_002994603.1| - 0.035 14.6 0.0 0.083 13.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_3 PF01381.22 gi|242399179|ref|YP_002994603.1| - 0.072 13.2 0.1 0.22 11.6 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix HTH_12 PF08461.10 gi|242399179|ref|YP_002994603.1| - 0.084 12.8 0.1 0.19 11.7 0.1 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Phage_terminase PF10668.9 gi|242399179|ref|YP_002994603.1| - 0.17 11.9 0.0 0.44 10.6 0.0 1.7 1 0 0 1 1 1 0 Phage terminase small subunit CBS PF00571.28 gi|242399180|ref|YP_002994604.1| - 3.8e-21 75.3 7.4 4.7e-11 43.0 1.7 2.5 3 0 0 3 3 3 2 CBS domain Rubredoxin_2 PF18073.1 gi|242399180|ref|YP_002994604.1| - 0.015 15.1 0.8 0.57 10.0 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Nudix_N_2 PF14803.6 gi|242399180|ref|YP_002994604.1| - 0.067 13.1 1.7 0.14 12.1 1.7 1.4 1 0 0 1 1 1 0 Nudix N-terminal ADK_lid PF05191.14 gi|242399180|ref|YP_002994604.1| - 0.2 11.7 1.0 13 5.9 0.2 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-dskA_traR PF01258.17 gi|242399180|ref|YP_002994604.1| - 0.23 11.5 4.4 1.1 9.2 4.5 2.0 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Proteasome PF00227.26 gi|242399181|ref|YP_002994605.1| - 4.2e-51 173.1 0.1 4.8e-51 173.0 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF4157 PF13699.6 gi|242399182|ref|YP_002994606.1| - 5.1e-06 26.6 0.1 9e-06 25.8 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) cobW PF02492.19 gi|242399183|ref|YP_002994607.1| - 6.9e-06 25.8 0.0 1.6e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain B12-binding PF02310.19 gi|242399183|ref|YP_002994607.1| - 6.2e-05 23.0 0.0 2 8.5 0.0 4.1 5 0 0 5 5 4 2 B12 binding domain PTS_IIB PF02302.17 gi|242399183|ref|YP_002994607.1| - 0.00036 21.2 3.3 2.2 9.1 0.0 4.4 4 1 1 5 5 4 1 PTS system, Lactose/Cellobiose specific IIB subunit CbiA PF01656.23 gi|242399183|ref|YP_002994607.1| - 0.0015 18.5 0.1 0.021 14.9 0.2 2.5 2 1 1 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.17 gi|242399183|ref|YP_002994607.1| - 0.0052 16.5 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Thymidylate kinase SWI2_SNF2 PF18766.1 gi|242399183|ref|YP_002994607.1| - 0.007 16.1 0.0 0.021 14.5 0.0 1.8 2 0 0 2 2 2 1 SWI2/SNF2 ATPase PPK2 PF03976.14 gi|242399183|ref|YP_002994607.1| - 0.015 14.8 0.1 0.054 13.0 0.1 1.9 1 1 1 2 2 2 0 Polyphosphate kinase 2 (PPK2) MipZ PF09140.11 gi|242399183|ref|YP_002994607.1| - 0.015 14.6 0.0 0.064 12.5 0.0 2.0 2 0 0 2 2 2 0 ATPase MipZ GFO_IDH_MocA PF01408.22 gi|242399183|ref|YP_002994607.1| - 0.031 15.1 0.0 18 6.2 0.0 2.9 3 0 0 3 3 2 0 Oxidoreductase family, NAD-binding Rossmann fold Glyco_tran_WecB PF03808.13 gi|242399183|ref|YP_002994607.1| - 0.04 13.9 0.4 9.6 6.1 0.0 3.5 3 1 1 4 4 4 0 Glycosyl transferase WecB/TagA/CpsF family RuvX PF03652.15 gi|242399183|ref|YP_002994607.1| - 0.052 13.9 0.8 1.2 9.5 0.0 2.9 4 0 0 4 4 3 0 Holliday junction resolvase UPF0180 PF03698.13 gi|242399183|ref|YP_002994607.1| - 0.055 13.7 0.1 3.4 7.9 0.0 3.6 5 0 0 5 5 5 0 Uncharacterised protein family (UPF0180) SRP54 PF00448.22 gi|242399183|ref|YP_002994607.1| - 0.064 12.9 0.2 2.4 7.7 0.0 2.7 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain AAA_31 PF13614.6 gi|242399183|ref|YP_002994607.1| - 0.067 13.1 0.6 0.22 11.4 0.1 2.1 2 0 0 2 2 1 0 AAA domain Zeta_toxin PF06414.12 gi|242399183|ref|YP_002994607.1| - 0.073 12.3 0.1 0.16 11.2 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|242399183|ref|YP_002994607.1| - 0.086 12.7 0.1 1.1 9.1 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase DUF2325 PF10087.9 gi|242399183|ref|YP_002994607.1| - 0.09 12.9 0.8 6 7.0 0.0 3.8 5 0 0 5 5 4 0 Uncharacterized protein conserved in bacteria (DUF2325) AAA_22 PF13401.6 gi|242399183|ref|YP_002994607.1| - 0.094 13.0 0.1 18 5.6 0.0 2.7 3 0 0 3 3 3 0 AAA domain DAHP_snth_FXD PF18152.1 gi|242399183|ref|YP_002994607.1| - 0.096 12.5 1.1 1.9 8.4 0.1 3.0 3 0 0 3 3 3 0 DAHP synthase ferredoxin-like domain AAA_26 PF13500.6 gi|242399183|ref|YP_002994607.1| - 0.12 12.2 0.1 1.2 9.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain LytR_C PF13399.6 gi|242399183|ref|YP_002994607.1| - 0.12 13.3 0.0 0.37 11.8 0.0 1.8 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator PB1 PF00564.24 gi|242399183|ref|YP_002994607.1| - 0.14 12.1 0.1 9.6 6.2 0.0 3.2 4 0 0 4 4 3 0 PB1 domain DUF2179 PF10035.9 gi|242399183|ref|YP_002994607.1| - 0.17 11.7 5.5 0.6 9.9 0.3 3.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2179) ATP_bind_1 PF03029.17 gi|242399183|ref|YP_002994607.1| - 0.21 11.3 0.2 8.6 6.1 0.0 2.7 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|242399183|ref|YP_002994607.1| - 0.25 11.0 0.5 1.6 8.4 0.3 2.4 2 0 0 2 2 2 0 AAA domain MFS_3 PF05977.13 gi|242399184|ref|YP_002994608.1| - 4.2e-27 94.8 18.0 5.3e-27 94.4 18.0 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 gi|242399184|ref|YP_002994608.1| - 5e-27 94.8 22.8 5e-27 94.8 22.8 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|242399184|ref|YP_002994608.1| - 4.3e-07 28.9 2.2 4.3e-07 28.9 2.2 3.1 2 1 1 3 3 3 3 MFS/sugar transport protein CPBP PF02517.16 gi|242399185|ref|YP_002994609.1| - 7.8e-13 48.6 13.8 8.9e-12 45.2 13.8 2.4 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease DUF5381 PF17353.2 gi|242399185|ref|YP_002994609.1| - 0.12 12.1 0.2 5 6.8 0.0 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5381) DUF2070 PF09843.9 gi|242399185|ref|YP_002994609.1| - 3.4 5.9 5.9 9.4 4.4 5.9 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) Methyltransf_25 PF13649.6 gi|242399187|ref|YP_002994611.1| - 1.5e-10 41.6 0.0 9e-10 39.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|242399187|ref|YP_002994611.1| - 3.4e-08 33.5 0.0 3.6e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|242399187|ref|YP_002994611.1| - 2.2e-07 31.4 0.0 1e-06 29.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|242399187|ref|YP_002994611.1| - 4.3e-07 30.6 0.0 6.6e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|242399187|ref|YP_002994611.1| - 1.4e-06 28.2 0.0 1.7e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|242399187|ref|YP_002994611.1| - 0.0013 18.2 0.0 0.0015 18.0 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|242399187|ref|YP_002994611.1| - 0.0021 17.4 0.0 0.0057 16.0 0.0 1.6 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase N2227 PF07942.12 gi|242399187|ref|YP_002994611.1| - 0.004 16.4 0.0 0.004 16.4 0.0 1.1 1 0 0 1 1 1 1 N2227-like protein MetW PF07021.12 gi|242399187|ref|YP_002994611.1| - 0.0087 15.7 0.0 0.01 15.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|242399187|ref|YP_002994611.1| - 0.013 14.8 0.0 0.015 14.6 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|242399187|ref|YP_002994611.1| - 0.017 14.7 0.0 0.021 14.4 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|242399187|ref|YP_002994611.1| - 0.16 11.4 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.19 gi|242399187|ref|YP_002994611.1| - 0.18 11.5 0.0 0.19 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Aldo_ket_red PF00248.21 gi|242399188|ref|YP_002994612.1| - 1.6e-74 250.8 0.0 3.6e-74 249.6 0.0 1.5 1 1 1 2 2 2 1 Aldo/keto reductase family AP_endonuc_2 PF01261.24 gi|242399188|ref|YP_002994612.1| - 0.0018 17.7 0.0 1.2 8.5 0.0 2.6 2 1 0 2 2 2 2 Xylose isomerase-like TIM barrel Acetyltransf_7 PF13508.7 gi|242399189|ref|YP_002994613.1| - 0.0032 17.8 0.0 0.0058 17.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|242399189|ref|YP_002994613.1| - 0.015 15.5 0.1 0.036 14.3 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|242399189|ref|YP_002994613.1| - 0.062 13.2 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PLDc_N PF13396.6 gi|242399191|ref|YP_002994615.1| - 2.6e-07 30.5 0.6 2.6e-07 30.5 0.6 1.5 1 1 0 1 1 1 1 Phospholipase_D-nuclease N-terminal Bac_rhodopsin PF01036.18 gi|242399191|ref|YP_002994615.1| - 0.0034 17.0 4.2 0.0038 16.8 4.2 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF4131 PF13567.6 gi|242399191|ref|YP_002994615.1| - 0.0039 16.8 1.1 0.004 16.8 1.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) LGT PF01790.18 gi|242399191|ref|YP_002994615.1| - 0.029 13.6 1.6 0.031 13.5 1.6 1.0 1 0 0 1 1 1 0 Prolipoprotein diacylglyceryl transferase Insulin_TMD PF17870.1 gi|242399191|ref|YP_002994615.1| - 0.073 13.2 0.4 0.16 12.1 0.0 1.7 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment FeoB_associated PF12669.7 gi|242399191|ref|YP_002994615.1| - 0.14 12.6 1.7 4 7.9 0.1 2.1 1 1 1 2 2 2 0 FeoB-associated Cys-rich membrane protein DUF5336 PF17270.2 gi|242399191|ref|YP_002994615.1| - 0.29 10.7 1.4 0.29 10.7 1.4 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5336) TMEM156 PF15106.6 gi|242399191|ref|YP_002994615.1| - 1.1 8.6 2.5 1.1 8.6 2.5 1.1 1 0 0 1 1 1 0 TMEM156 protein family HBB PF06777.11 gi|242399192|ref|YP_002994616.1| - 1.4e-68 230.4 0.1 2.9e-68 229.3 0.1 1.6 1 0 0 1 1 1 1 Helical and beta-bridge domain Helicase_C_2 PF13307.6 gi|242399192|ref|YP_002994616.1| - 1.9e-37 129.1 0.2 1.6e-36 126.1 0.0 2.3 2 1 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|242399192|ref|YP_002994616.1| - 3.1e-31 108.3 1.0 5.6e-31 107.5 1.0 1.4 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|242399192|ref|YP_002994616.1| - 2.8e-07 30.7 1.0 1.7e-06 28.2 1.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|242399192|ref|YP_002994616.1| - 3e-06 27.1 0.1 0.00031 20.6 0.0 3.1 2 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|242399192|ref|YP_002994616.1| - 0.0038 17.0 0.0 0.0077 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|242399192|ref|YP_002994616.1| - 0.012 15.1 0.1 1.5 8.2 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein AAA_22 PF13401.6 gi|242399192|ref|YP_002994616.1| - 0.033 14.5 0.3 2 8.7 0.0 2.6 1 1 1 2 2 2 0 AAA domain AAA_35 PF14516.6 gi|242399192|ref|YP_002994616.1| - 0.058 12.2 0.0 0.12 11.2 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain DUF1422 PF07226.11 gi|242399193|ref|YP_002994617.1| - 0.044 13.8 0.5 0.054 13.5 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1422) TRAP-gamma PF07074.12 gi|242399193|ref|YP_002994617.1| - 0.12 12.0 0.3 0.15 11.6 0.3 1.3 1 1 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) Peptidase_M42 PF05343.14 gi|242399194|ref|YP_002994618.1| - 3.3e-113 377.6 0.3 3.8e-113 377.3 0.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|242399194|ref|YP_002994618.1| - 1e-11 44.9 0.1 1.9e-11 44.0 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|242399194|ref|YP_002994618.1| - 5.2e-06 26.3 0.1 0.0001 22.0 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.15 gi|242399194|ref|YP_002994618.1| - 0.0088 14.9 0.1 0.039 12.8 0.0 1.8 2 0 0 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) SfsA PF03749.13 gi|242399195|ref|YP_002994619.1| - 6.5e-39 133.0 0.0 8.2e-39 132.7 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|242399195|ref|YP_002994619.1| - 2.9e-10 40.2 0.0 5.9e-10 39.1 0.0 1.6 1 0 0 1 1 1 1 SfsA N-terminal OB domain Glyco_tranf_2_3 PF13641.6 gi|242399196|ref|YP_002994620.1| - 2.6e-37 128.9 0.0 3.3e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|242399196|ref|YP_002994620.1| - 3.2e-30 105.2 0.0 4.6e-30 104.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|242399196|ref|YP_002994620.1| - 4e-28 98.7 1.0 6.9e-28 97.9 1.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|242399196|ref|YP_002994620.1| - 1.8e-14 53.6 0.0 2.7e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|242399196|ref|YP_002994620.1| - 2.9e-11 43.4 0.0 1.1e-10 41.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.15 gi|242399196|ref|YP_002994620.1| - 4.1e-09 35.6 0.2 0.0008 18.1 0.9 3.0 3 0 0 3 3 3 2 Chitin synthase Glyco_tranf_2_4 PF13704.6 gi|242399196|ref|YP_002994620.1| - 0.0077 16.7 0.0 0.015 15.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Prion_bPrPp PF11587.8 gi|242399196|ref|YP_002994620.1| - 0.62 9.9 0.1 0.62 9.9 0.1 2.5 3 0 0 3 3 3 0 Major prion protein bPrPp - N terminal Toprim PF01751.22 gi|242399197|ref|YP_002994621.1| - 8.5e-10 38.8 1.0 1.1e-07 32.1 0.1 3.1 3 0 0 3 3 3 1 Toprim domain Toprim_2 PF13155.6 gi|242399197|ref|YP_002994621.1| - 0.0038 17.6 0.0 0.0079 16.6 0.0 1.6 1 0 0 1 1 1 1 Toprim-like Cluap1 PF10234.9 gi|242399197|ref|YP_002994621.1| - 0.011 15.1 4.2 1.2 8.5 3.2 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 HALZ PF02183.18 gi|242399197|ref|YP_002994621.1| - 0.012 15.8 11.3 0.035 14.3 3.4 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper DASH_Dad3 PF08656.10 gi|242399197|ref|YP_002994621.1| - 0.013 15.5 5.7 0.18 11.9 2.1 2.4 1 1 1 2 2 2 0 DASH complex subunit Dad3 FapA PF03961.13 gi|242399197|ref|YP_002994621.1| - 0.029 13.0 2.3 0.048 12.3 2.3 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A Toprim_4 PF13662.6 gi|242399197|ref|YP_002994621.1| - 0.11 13.0 0.3 0.43 11.1 0.3 2.1 1 1 0 1 1 1 0 Toprim domain GrpE PF01025.19 gi|242399197|ref|YP_002994621.1| - 1 9.0 11.4 0.37 10.4 5.5 2.4 3 0 0 3 3 3 0 GrpE ZapB PF06005.12 gi|242399197|ref|YP_002994621.1| - 2.5 8.6 18.4 0.23 11.9 12.2 2.4 2 1 0 2 2 2 0 Cell division protein ZapB bZIP_1 PF00170.21 gi|242399197|ref|YP_002994621.1| - 7.2 6.8 13.2 0.66 10.1 3.4 2.7 1 1 1 2 2 2 0 bZIP transcription factor Ku_C PF03730.14 gi|242399197|ref|YP_002994621.1| - 8 7.2 8.7 1.2 9.9 4.0 2.2 2 1 0 2 2 2 0 Ku70/Ku80 C-terminal arm Phage_integrase PF00589.22 gi|242399198|ref|YP_002994622.1| - 1.3e-52 178.0 0.0 2e-52 177.5 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|242399198|ref|YP_002994622.1| - 1.3e-08 35.0 1.5 7.8e-08 32.5 0.5 2.7 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|242399198|ref|YP_002994622.1| - 2e-07 31.4 1.7 1.1e-06 29.0 1.0 2.6 3 1 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|242399198|ref|YP_002994622.1| - 4.5e-07 29.9 0.8 0.0021 18.0 0.2 2.6 2 1 0 2 2 2 2 Archaeal phage integrase HTH_23 PF13384.6 gi|242399198|ref|YP_002994622.1| - 0.084 12.7 0.0 23 5.0 0.0 3.5 4 0 0 4 4 4 0 Homeodomain-like domain Pox_D5 PF03288.16 gi|242399198|ref|YP_002994622.1| - 1.4 9.5 4.3 32 5.1 1.7 3.2 2 1 0 2 2 2 0 Poxvirus D5 protein-like ADP_PFK_GK PF04587.15 gi|242399199|ref|YP_002994623.1| - 1e-106 357.1 0.0 1.1e-106 356.9 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region Amdase PF17645.1 gi|242399200|ref|YP_002994624.1| - 1.8e-34 119.3 0.0 2.1e-34 119.1 0.0 1.0 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|242399200|ref|YP_002994624.1| - 1.6e-14 54.3 0.0 2.1e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Memo PF01875.17 gi|242399201|ref|YP_002994625.1| - 2.9e-71 239.8 0.0 3.3e-71 239.6 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|242399201|ref|YP_002994625.1| - 0.0032 16.6 0.0 0.0052 15.9 0.0 1.4 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Polbeta PF18765.1 gi|242399203|ref|YP_002994627.1| - 2.8e-15 56.2 0.1 4.7e-15 55.4 0.1 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|242399203|ref|YP_002994627.1| - 2.4e-11 43.8 0.1 3.1e-11 43.4 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain RlaP PF10127.9 gi|242399203|ref|YP_002994627.1| - 0.066 12.8 0.0 0.083 12.5 0.0 1.1 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family DUF86 PF01934.17 gi|242399204|ref|YP_002994628.1| - 7.6e-23 80.6 1.3 9.5e-23 80.3 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF4145 PF13643.6 gi|242399204|ref|YP_002994628.1| - 0.0012 18.9 2.4 0.02 15.0 0.6 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4145) GHMP_kinases_N PF00288.26 gi|242399205|ref|YP_002994629.1| - 2.1e-17 63.1 2.2 4.2e-17 62.1 2.2 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|242399205|ref|YP_002994629.1| - 2.6e-13 50.1 0.4 2.6e-13 50.1 0.4 2.4 2 2 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|242399205|ref|YP_002994629.1| - 0.0033 17.0 0.0 0.0096 15.5 0.0 1.8 1 0 0 1 1 1 1 Galactokinase galactose-binding signature DUF2150 PF09920.9 gi|242399205|ref|YP_002994629.1| - 0.032 14.2 0.4 7.6 6.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2150) Flagellin_IN PF07196.13 gi|242399205|ref|YP_002994629.1| - 0.045 14.0 0.2 2.8 8.2 0.0 2.8 2 0 0 2 2 2 0 Flagellin hook IN motif Prenyltrans PF00432.21 gi|242399208|ref|YP_002994632.1| - 6.6e-06 25.8 2.1 7 6.5 0.1 6.7 5 2 0 5 5 5 1 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_C PF13243.6 gi|242399208|ref|YP_002994632.1| - 0.00063 18.9 0.1 0.43 9.6 0.0 3.6 3 1 1 4 4 4 2 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 gi|242399208|ref|YP_002994632.1| - 0.019 14.1 0.1 46 3.0 0.1 3.6 2 1 0 3 3 3 0 Squalene-hopene cyclase N-terminal domain AA_kinase PF00696.28 gi|242399209|ref|YP_002994633.1| - 1.9e-46 158.6 0.0 2.2e-46 158.4 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family GluRS_N PF18466.1 gi|242399209|ref|YP_002994633.1| - 0.013 15.9 0.0 0.069 13.6 0.0 2.1 2 0 0 2 2 2 0 Glutamate--tRNA ligase N-terminal domain FMN_dh PF01070.18 gi|242399210|ref|YP_002994634.1| - 8.1e-29 100.7 1.3 9.6e-17 61.0 1.4 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|242399210|ref|YP_002994634.1| - 2.6e-05 23.4 8.2 0.00053 19.1 0.3 3.5 3 1 0 4 4 4 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|242399210|ref|YP_002994634.1| - 0.00038 19.9 2.7 0.00065 19.2 1.4 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase Glu_synthase PF01645.17 gi|242399210|ref|YP_002994634.1| - 0.0031 16.7 0.5 0.16 11.1 0.3 2.3 2 0 0 2 2 2 2 Conserved region in glutamate synthase DUF561 PF04481.12 gi|242399210|ref|YP_002994634.1| - 0.017 14.3 0.0 0.041 13.0 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|242399210|ref|YP_002994634.1| - 0.082 12.4 0.1 5 6.5 0.0 2.9 2 1 1 3 3 3 0 Histidine biosynthesis protein RMMBL PF07521.12 gi|242399211|ref|YP_002994635.1| - 1.2e-13 50.8 3.2 2.6e-12 46.5 0.1 3.0 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|242399211|ref|YP_002994635.1| - 1.8e-13 50.9 0.0 3.1e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|242399211|ref|YP_002994635.1| - 3.7e-08 33.1 0.7 6e-08 32.4 0.1 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|242399211|ref|YP_002994635.1| - 0.0017 17.8 0.4 0.0046 16.4 0.4 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily domain DUF2114 PF09887.9 gi|242399211|ref|YP_002994635.1| - 0.024 13.1 0.0 0.041 12.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2114) PDEase_II PF02112.15 gi|242399211|ref|YP_002994635.1| - 0.025 13.7 0.7 0.085 12.0 0.4 1.9 1 1 1 2 2 2 0 cAMP phosphodiesterases class-II polyprenyl_synt PF00348.17 gi|242399212|ref|YP_002994636.1| - 6e-72 241.8 0.0 8.3e-72 241.3 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase SQS_PSY PF00494.19 gi|242399212|ref|YP_002994636.1| - 0.0067 16.0 0.0 0.45 10.0 0.0 2.2 2 0 0 2 2 2 2 Squalene/phytoene synthase POTRA_TamA_1 PF17243.2 gi|242399212|ref|YP_002994636.1| - 0.083 13.0 0.2 0.17 12.0 0.2 1.5 1 0 0 1 1 1 0 POTRA domain TamA domain 1 Lon_C PF05362.13 gi|242399213|ref|YP_002994637.1| - 9.5e-15 54.7 0.9 1.8e-14 53.8 0.9 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|242399213|ref|YP_002994637.1| - 0.00057 19.7 0.2 0.0033 17.2 0.0 2.4 3 0 0 3 3 3 1 Subunit ChlI of Mg-chelatase Ntox28 PF15605.6 gi|242399213|ref|YP_002994637.1| - 0.12 12.6 0.1 0.44 10.8 0.1 2.0 1 0 0 1 1 1 0 Bacterial toxin 28 Glyco_hydro_108 PF05838.12 gi|242399213|ref|YP_002994637.1| - 0.14 12.7 0.8 0.85 10.1 0.2 2.5 2 0 0 2 2 2 0 Glycosyl hydrolase 108 Hypoth_Ymh PF09509.10 gi|242399213|ref|YP_002994637.1| - 0.16 11.8 1.2 9.7 6.1 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (Hypoth_ymh) DUF745 PF05335.13 gi|242399213|ref|YP_002994637.1| - 1.8 8.3 5.6 1.7 8.3 0.4 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF745) DUF4398 PF14346.6 gi|242399213|ref|YP_002994637.1| - 3.6 8.3 6.7 6.1 7.5 0.1 3.8 4 0 0 4 4 4 0 Domain of unknown function (DUF4398) HEPN PF05168.14 gi|242399213|ref|YP_002994637.1| - 6.7 6.9 12.2 1.3 9.2 0.3 3.5 3 1 0 3 3 3 0 HEPN domain Ala_racemase_N PF01168.20 gi|242399214|ref|YP_002994638.1| - 1.8e-29 102.9 0.0 2.3e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain D-ser_dehydrat PF14031.6 gi|242399214|ref|YP_002994638.1| - 2.8e-10 40.7 0.0 8e-10 39.3 0.0 1.8 2 0 0 2 2 2 1 Putative serine dehydratase domain CbiC PF02570.15 gi|242399214|ref|YP_002994638.1| - 0.011 15.4 0.0 0.47 10.1 0.0 2.3 1 1 0 1 1 1 0 Precorrin-8X methylmutase Nitroreductase PF00881.24 gi|242399215|ref|YP_002994639.1| - 3.9e-32 111.7 0.0 4.6e-32 111.4 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|242399215|ref|YP_002994639.1| - 1.4e-07 31.3 0.1 0.022 14.3 0.0 2.5 2 1 1 3 3 3 2 Putative TM nitroreductase DUF4079 PF13301.6 gi|242399216|ref|YP_002994640.1| - 0.0001 22.4 3.0 0.00012 22.3 3.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4079) DUF2768 PF10966.8 gi|242399216|ref|YP_002994640.1| - 0.014 15.9 7.2 0.018 15.4 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2768) DUF4405 PF14358.6 gi|242399216|ref|YP_002994640.1| - 0.016 15.8 5.0 0.027 15.0 5.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4405) LptF_LptG PF03739.14 gi|242399216|ref|YP_002994640.1| - 0.048 12.5 2.5 0.054 12.3 2.5 1.0 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG Cytochrom_B561 PF03188.16 gi|242399216|ref|YP_002994640.1| - 0.073 13.2 4.2 0.12 12.5 4.2 1.4 1 1 0 1 1 1 0 Eukaryotic cytochrome b561 DUF2206 PF09971.9 gi|242399216|ref|YP_002994640.1| - 0.29 9.8 7.4 0.32 9.7 7.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) Cupin_2 PF07883.11 gi|242399217|ref|YP_002994641.1| - 1.4e-16 59.9 0.1 2.3e-16 59.3 0.1 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|242399217|ref|YP_002994641.1| - 7.9e-09 35.5 0.1 1e-08 35.1 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|242399217|ref|YP_002994641.1| - 6.9e-06 25.7 0.0 8e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|242399217|ref|YP_002994641.1| - 1.6e-05 24.9 0.1 1.7e-05 24.8 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|242399217|ref|YP_002994641.1| - 0.0011 18.6 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Auxin_BP PF02041.16 gi|242399217|ref|YP_002994641.1| - 0.0012 18.5 0.1 0.0021 17.8 0.1 1.4 1 1 0 1 1 1 1 Auxin binding protein Ectoine_synth PF06339.12 gi|242399217|ref|YP_002994641.1| - 0.0025 18.0 0.0 0.0028 17.8 0.0 1.0 1 0 0 1 1 1 1 Ectoine synthase PCO_ADO PF07847.12 gi|242399217|ref|YP_002994641.1| - 0.051 13.0 0.0 0.066 12.7 0.0 1.2 1 0 0 1 1 1 0 PCO_ADO Cupin_7 PF12973.7 gi|242399217|ref|YP_002994641.1| - 0.13 12.2 0.3 0.18 11.7 0.3 1.4 1 1 0 1 1 1 0 ChrR Cupin-like domain Xan_ur_permease PF00860.20 gi|242399218|ref|YP_002994642.1| - 5.7e-97 324.9 38.1 6.7e-97 324.6 38.1 1.0 1 0 0 1 1 1 1 Permease family UPRTase PF14681.6 gi|242399219|ref|YP_002994643.1| - 2.7e-50 170.7 0.0 3.2e-50 170.5 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|242399219|ref|YP_002994643.1| - 4.1e-10 39.4 0.7 5.4e-10 39.0 0.7 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|242399219|ref|YP_002994643.1| - 0.094 12.2 0.0 0.23 10.9 0.0 1.6 1 1 1 2 2 2 0 Phosphoribosyl transferase HTH_AsnC-type PF13404.6 gi|242399220|ref|YP_002994644.1| - 2.4e-13 49.7 0.5 3e-12 46.1 0.2 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|242399220|ref|YP_002994644.1| - 2.3e-12 46.2 2.6 4e-12 45.5 1.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|242399220|ref|YP_002994644.1| - 3.5e-07 30.1 0.0 8.7e-07 28.8 0.0 1.9 2 1 0 2 2 2 1 Lrp/AsnC ligand binding domain MarR PF01047.22 gi|242399220|ref|YP_002994644.1| - 1.6e-05 24.7 0.1 3.7e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|242399220|ref|YP_002994644.1| - 3.3e-05 23.7 1.1 7.1e-05 22.7 0.3 2.0 2 0 0 2 2 1 1 HTH domain HTH_20 PF12840.7 gi|242399220|ref|YP_002994644.1| - 0.00019 21.4 0.1 0.00073 19.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|242399220|ref|YP_002994644.1| - 0.00032 20.1 0.0 0.021 14.4 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|242399220|ref|YP_002994644.1| - 0.00062 19.6 0.2 0.0026 17.6 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|242399220|ref|YP_002994644.1| - 0.00083 19.2 0.7 0.0019 18.0 0.2 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.11 gi|242399220|ref|YP_002994644.1| - 0.0021 18.1 0.7 0.0052 16.8 0.2 2.0 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.10 gi|242399220|ref|YP_002994644.1| - 0.0039 17.0 0.5 0.089 12.6 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_9 PF08221.11 gi|242399220|ref|YP_002994644.1| - 0.0093 16.0 2.1 0.21 11.7 0.1 2.7 3 0 0 3 3 3 1 RNA polymerase III subunit RPC82 helix-turn-helix domain E3_UFM1_ligase PF09743.9 gi|242399220|ref|YP_002994644.1| - 0.027 14.1 0.1 0.039 13.6 0.1 1.2 1 0 0 1 1 1 0 E3 UFM1-protein ligase 1 HTH_45 PF14947.6 gi|242399220|ref|YP_002994644.1| - 0.041 13.9 2.7 4.6 7.3 0.0 3.3 1 1 3 4 4 4 0 Winged helix-turn-helix HTH_41 PF14502.6 gi|242399220|ref|YP_002994644.1| - 0.042 13.5 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Dcc1 PF09724.9 gi|242399220|ref|YP_002994644.1| - 0.044 13.1 0.0 0.06 12.6 0.0 1.3 1 0 0 1 1 1 0 Sister chromatid cohesion protein Dcc1 HTH_34 PF13601.6 gi|242399220|ref|YP_002994644.1| - 0.082 13.1 0.1 0.16 12.1 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain FeoC PF09012.10 gi|242399220|ref|YP_002994644.1| - 0.083 13.0 0.0 0.23 11.6 0.0 1.7 1 0 0 1 1 1 0 FeoC like transcriptional regulator RPA_C PF08784.11 gi|242399220|ref|YP_002994644.1| - 0.13 13.0 0.0 0.23 12.1 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_50 PF18024.1 gi|242399220|ref|YP_002994644.1| - 0.19 11.4 1.1 0.77 9.4 0.2 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain DEAD PF00270.29 gi|242399221|ref|YP_002994645.1| - 4.5e-25 88.4 0.0 1.2e-24 87.0 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|242399221|ref|YP_002994645.1| - 5.9e-14 52.4 0.0 2.3e-13 50.5 0.0 2.1 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|242399221|ref|YP_002994645.1| - 4.6e-08 33.2 0.0 9.2e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|242399221|ref|YP_002994645.1| - 0.033 12.9 0.0 0.11 11.2 0.0 1.5 1 1 0 1 1 1 0 SNF2 family N-terminal domain LRV_FeS PF05484.11 gi|242399221|ref|YP_002994645.1| - 0.15 12.1 0.2 0.35 10.9 0.2 1.5 1 0 0 1 1 1 0 LRV protein FeS4 cluster Peptidase_U4 PF03419.13 gi|242399222|ref|YP_002994646.1| - 0.00076 18.9 10.0 0.0014 18.0 10.0 1.3 1 0 0 1 1 1 1 Sporulation factor SpoIIGA VirB3 PF05101.13 gi|242399222|ref|YP_002994646.1| - 1.5 9.1 6.6 0.97 9.7 4.3 2.0 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein Radical_SAM PF04055.21 gi|242399223|ref|YP_002994647.1| - 8.1e-16 58.9 0.0 1.2e-15 58.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|242399223|ref|YP_002994647.1| - 1.1e-08 35.4 0.2 1.3e-07 32.0 0.1 2.3 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|242399223|ref|YP_002994647.1| - 7.3e-08 32.6 0.0 2e-07 31.1 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF63 PF01889.17 gi|242399224|ref|YP_002994648.1| - 3.4e-68 230.8 17.3 3.9e-68 230.6 17.3 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 FeoB_associated PF12669.7 gi|242399224|ref|YP_002994648.1| - 1.8 9.1 3.0 78 3.8 1.0 3.4 3 0 0 3 3 3 0 FeoB-associated Cys-rich membrane protein Yip1 PF04893.17 gi|242399225|ref|YP_002994649.1| - 0.0018 18.0 28.2 0.0018 18.0 28.2 1.5 1 1 0 1 1 1 1 Yip1 domain TctB PF07331.11 gi|242399225|ref|YP_002994649.1| - 0.083 13.2 22.3 0.11 12.8 22.3 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF5305 PF17231.2 gi|242399226|ref|YP_002994650.1| - 6.8e-11 42.0 1.4 6.8e-11 42.0 1.4 1.7 2 0 0 2 2 2 1 Family of unknown function (DUF5305) DUF4139 PF13598.6 gi|242399227|ref|YP_002994651.1| - 0.0005 19.9 0.0 0.00074 19.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4139) DUF11 PF01345.18 gi|242399227|ref|YP_002994651.1| - 0.0017 18.6 0.0 0.0037 17.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF11 SpaA PF17802.1 gi|242399227|ref|YP_002994651.1| - 0.0048 17.2 3.3 1 9.8 0.3 3.3 3 1 0 3 3 3 2 Prealbumin-like fold domain DUF4925 PF16272.5 gi|242399227|ref|YP_002994651.1| - 0.043 13.3 0.0 0.081 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4925) DUF4232 PF14016.6 gi|242399227|ref|YP_002994651.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4232) Rib PF08428.10 gi|242399227|ref|YP_002994651.1| - 0.33 11.0 2.8 0.68 10.0 0.1 2.7 3 0 0 3 3 3 0 Rib/alpha-like repeat Peptidase_S24 PF00717.23 gi|242399228|ref|YP_002994652.1| - 3.3e-12 46.2 0.1 7.7e-12 45.0 0.1 1.6 1 0 0 1 1 1 1 Peptidase S24-like IRK PF01007.20 gi|242399228|ref|YP_002994652.1| - 0.15 11.8 0.4 1.6 8.6 0.0 2.5 3 0 0 3 3 3 0 Inward rectifier potassium channel transmembrane domain FtsX PF02687.21 gi|242399228|ref|YP_002994652.1| - 0.24 11.9 0.2 0.24 11.9 0.2 2.9 3 1 0 3 3 3 0 FtsX-like permease family DUF1102 PF06510.11 gi|242399229|ref|YP_002994653.1| - 5.6e-30 104.4 0.6 6.9e-30 104.1 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) DUF1102 PF06510.11 gi|242399230|ref|YP_002994654.1| - 1.4e-36 125.8 0.5 1.8e-36 125.4 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) DUF3185 PF11381.8 gi|242399230|ref|YP_002994654.1| - 0.036 14.1 0.9 0.12 12.4 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF1102 PF06510.11 gi|242399231|ref|YP_002994655.1| - 5.5e-35 120.6 1.1 9.4e-34 116.6 1.1 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1102) PMM PF03332.13 gi|242399232|ref|YP_002994656.1| - 0.054 13.3 0.0 0.073 12.8 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic phosphomannomutase Vps39_1 PF10366.9 gi|242399233|ref|YP_002994657.1| - 0.0013 19.0 0.1 0.0018 18.5 0.1 1.4 1 1 0 1 1 1 1 Vacuolar sorting protein 39 domain 1 Arg_repressor PF01316.21 gi|242399233|ref|YP_002994657.1| - 0.093 12.5 1.0 0.22 11.3 1.0 1.7 1 1 0 1 1 1 0 Arginine repressor, DNA binding domain DUF5071 PF16804.5 gi|242399233|ref|YP_002994657.1| - 0.095 13.0 0.2 0.11 12.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5071) CbiQ PF02361.16 gi|242399235|ref|YP_002994659.1| - 2e-28 99.5 13.3 2e-28 99.5 13.3 1.5 2 0 0 2 2 2 1 Cobalt transport protein ABC_tran PF00005.27 gi|242399236|ref|YP_002994660.1| - 1.2e-29 103.6 0.0 1.7e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|242399236|ref|YP_002994660.1| - 7.7e-11 41.8 0.1 1.7e-09 37.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|242399236|ref|YP_002994660.1| - 1.9e-09 37.7 0.2 0.0014 18.5 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Mg_chelatase PF01078.21 gi|242399236|ref|YP_002994660.1| - 9.3e-05 21.9 0.0 0.00014 21.3 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|242399236|ref|YP_002994660.1| - 0.00015 21.6 0.0 0.00019 21.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|242399236|ref|YP_002994660.1| - 0.00051 20.6 0.1 0.00061 20.3 0.1 1.3 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|242399236|ref|YP_002994660.1| - 0.00051 20.0 0.4 0.0077 16.2 0.1 2.1 1 1 0 2 2 2 1 NTPase AAA_16 PF13191.6 gi|242399236|ref|YP_002994660.1| - 0.00055 20.4 0.0 0.0013 19.1 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.6 gi|242399236|ref|YP_002994660.1| - 0.00056 18.7 0.1 0.14 10.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|242399236|ref|YP_002994660.1| - 0.00097 18.8 0.3 0.0022 17.7 0.3 1.6 1 1 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|242399236|ref|YP_002994660.1| - 0.00098 18.8 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|242399236|ref|YP_002994660.1| - 0.0015 19.1 0.0 0.0047 17.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|242399236|ref|YP_002994660.1| - 0.0018 18.4 0.0 0.0032 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|242399236|ref|YP_002994660.1| - 0.002 18.3 0.0 0.085 13.1 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|242399236|ref|YP_002994660.1| - 0.0026 17.7 0.3 0.0085 16.0 0.0 1.9 2 1 1 3 3 2 1 NACHT domain AAA_14 PF13173.6 gi|242399236|ref|YP_002994660.1| - 0.003 17.6 0.0 0.051 13.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|242399236|ref|YP_002994660.1| - 0.0033 17.4 0.0 0.006 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|242399236|ref|YP_002994660.1| - 0.0037 17.5 0.1 0.008 16.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|242399236|ref|YP_002994660.1| - 0.0041 16.9 0.0 0.0069 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|242399236|ref|YP_002994660.1| - 0.0045 16.3 0.0 0.0083 15.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.6 gi|242399236|ref|YP_002994660.1| - 0.0051 17.1 0.0 0.018 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|242399236|ref|YP_002994660.1| - 0.0055 17.1 0.0 0.015 15.7 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|242399236|ref|YP_002994660.1| - 0.0055 16.4 0.0 0.024 14.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|242399236|ref|YP_002994660.1| - 0.011 15.5 0.2 0.26 11.0 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|242399236|ref|YP_002994660.1| - 0.012 14.8 0.1 0.021 14.0 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|242399236|ref|YP_002994660.1| - 0.016 15.1 0.0 0.029 14.3 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|242399236|ref|YP_002994660.1| - 0.02 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|242399236|ref|YP_002994660.1| - 0.025 13.6 0.0 0.044 12.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|242399236|ref|YP_002994660.1| - 0.036 13.6 0.0 0.14 11.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|242399236|ref|YP_002994660.1| - 0.056 13.2 0.0 0.09 12.5 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation TsaE PF02367.17 gi|242399236|ref|YP_002994660.1| - 0.067 13.2 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DLIC PF05783.11 gi|242399236|ref|YP_002994660.1| - 0.081 11.8 0.1 0.11 11.4 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) RNA_helicase PF00910.22 gi|242399236|ref|YP_002994660.1| - 0.1 13.0 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase cobW PF02492.19 gi|242399236|ref|YP_002994660.1| - 0.12 11.9 0.1 0.18 11.3 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PhoH PF02562.16 gi|242399236|ref|YP_002994660.1| - 0.12 11.8 0.1 0.26 10.7 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein APS_kinase PF01583.20 gi|242399236|ref|YP_002994660.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase ABC_ATPase PF09818.9 gi|242399236|ref|YP_002994660.1| - 0.31 9.8 0.7 5.7 5.6 0.4 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class BioY PF02632.14 gi|242399237|ref|YP_002994661.1| - 8e-37 126.3 17.9 1.1e-36 125.8 17.9 1.2 1 0 0 1 1 1 1 BioY family ECF_trnsprt PF12822.7 gi|242399237|ref|YP_002994661.1| - 8.5e-06 26.0 21.2 1.1e-05 25.6 21.2 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component Colicin_V PF02674.16 gi|242399237|ref|YP_002994661.1| - 3.1 7.7 18.3 0.6 10.1 13.6 2.2 2 1 0 2 2 2 0 Colicin V production protein NTP_transf_3 PF12804.7 gi|242399238|ref|YP_002994662.1| - 9.1e-05 22.9 0.0 0.00012 22.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Prok-JAB PF14464.6 gi|242399241|ref|YP_002994665.1| - 1.1e-10 41.3 0.0 1.6e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain HTH_5 PF01022.20 gi|242399242|ref|YP_002994666.1| - 3.4e-12 46.0 1.2 4.4e-12 45.7 0.2 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|242399242|ref|YP_002994666.1| - 1.4e-07 31.5 0.0 2.2e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain ArsR PF09824.9 gi|242399242|ref|YP_002994666.1| - 0.022 14.4 0.3 0.039 13.5 0.2 1.6 1 1 0 1 1 1 0 ArsR transcriptional regulator HTH_27 PF13463.6 gi|242399242|ref|YP_002994666.1| - 0.11 13.1 0.1 0.29 11.6 0.1 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Nore1-SARAH PF16517.5 gi|242399242|ref|YP_002994666.1| - 3.5 7.6 0.0 3.5 7.6 0.0 3.3 3 0 0 3 3 3 0 Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain MazG PF03819.17 gi|242399243|ref|YP_002994667.1| - 2.2e-14 53.4 1.2 2.8e-14 53.0 0.5 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain dUTPase_2 PF08761.11 gi|242399243|ref|YP_002994667.1| - 0.0015 18.8 0.2 0.0017 18.6 0.2 1.1 1 0 0 1 1 1 1 dUTPase hDGE_amylase PF14701.6 gi|242399243|ref|YP_002994667.1| - 0.021 14.0 0.1 0.024 13.7 0.1 1.0 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain Colicin_immun PF09204.10 gi|242399243|ref|YP_002994667.1| - 0.03 14.9 0.1 0.048 14.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial self-protective colicin-like immunity MazG-like PF12643.7 gi|242399243|ref|YP_002994667.1| - 0.051 13.8 0.3 0.072 13.4 0.3 1.3 1 0 0 1 1 1 0 MazG-like family HTH_24 PF13412.6 gi|242399244|ref|YP_002994668.1| - 1.4e-13 50.2 2.5 4.3e-13 48.6 0.7 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|242399244|ref|YP_002994668.1| - 2.7e-11 43.1 1.7 5.9e-11 42.0 1.3 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|242399244|ref|YP_002994668.1| - 2.5e-08 33.8 0.2 2.1e-07 30.8 0.1 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|242399244|ref|YP_002994668.1| - 0.00021 21.1 0.8 0.0022 17.8 0.3 2.3 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|242399244|ref|YP_002994668.1| - 0.00034 20.4 0.3 0.00066 19.5 0.3 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|242399244|ref|YP_002994668.1| - 0.00037 20.6 0.1 0.0011 19.2 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|242399244|ref|YP_002994668.1| - 0.00041 20.4 0.3 0.00084 19.4 0.2 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.22 gi|242399244|ref|YP_002994668.1| - 0.00056 19.8 0.3 0.0016 18.3 0.3 1.7 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|242399244|ref|YP_002994668.1| - 0.00082 19.3 0.6 0.0031 17.4 0.1 2.1 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.20 gi|242399244|ref|YP_002994668.1| - 0.0019 18.5 0.1 0.012 16.0 0.1 2.1 2 0 0 2 2 2 1 Transcriptional regulator AsnC_trans_reg PF01037.21 gi|242399244|ref|YP_002994668.1| - 0.0037 17.2 0.1 0.0076 16.2 0.1 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|242399244|ref|YP_002994668.1| - 0.0081 16.2 0.1 0.014 15.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Replic_Relax PF13814.6 gi|242399244|ref|YP_002994668.1| - 0.013 15.5 0.2 0.02 14.9 0.2 1.3 1 0 0 1 1 1 0 Replication-relaxation HTH_23 PF13384.6 gi|242399244|ref|YP_002994668.1| - 0.016 15.0 0.7 0.042 13.7 0.7 1.8 1 1 0 1 1 1 0 Homeodomain-like domain FeoC PF09012.10 gi|242399244|ref|YP_002994668.1| - 0.022 14.8 0.1 0.044 13.9 0.1 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Crp PF00325.20 gi|242399244|ref|YP_002994668.1| - 0.033 13.9 0.5 0.059 13.0 0.5 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HxlR PF01638.17 gi|242399244|ref|YP_002994668.1| - 0.033 14.0 0.9 0.16 11.8 0.2 2.2 1 1 0 2 2 2 0 HxlR-like helix-turn-helix FAM180 PF15173.6 gi|242399244|ref|YP_002994668.1| - 0.038 14.0 0.1 0.072 13.1 0.1 1.4 1 0 0 1 1 1 0 FAM180 family Stk19 PF10494.9 gi|242399244|ref|YP_002994668.1| - 0.038 13.7 0.9 0.12 12.0 0.4 1.9 1 1 1 2 2 2 0 Serine-threonine protein kinase 19 ATR13 PF16829.5 gi|242399244|ref|YP_002994668.1| - 0.049 14.0 1.0 3 8.3 0.1 2.6 2 1 0 2 2 2 0 Avirulence protein ATR13, RxLR effector GntR PF00392.21 gi|242399244|ref|YP_002994668.1| - 0.06 13.0 0.4 0.13 12.0 0.4 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family EAP30 PF04157.16 gi|242399244|ref|YP_002994668.1| - 0.072 12.4 0.1 0.13 11.5 0.1 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family DUF1690 PF07956.11 gi|242399244|ref|YP_002994668.1| - 0.084 13.3 1.7 3.4 8.1 0.3 2.1 2 0 0 2 2 2 0 Protein of Unknown function (DUF1690) Phage_rep_O PF04492.13 gi|242399244|ref|YP_002994668.1| - 0.087 13.4 0.3 0.5 11.0 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage replication protein O HTH_DeoR PF08220.12 gi|242399244|ref|YP_002994668.1| - 0.12 12.2 4.4 0.24 11.2 1.1 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain DUF2250 PF10007.9 gi|242399244|ref|YP_002994668.1| - 0.16 12.1 2.6 0.18 11.9 0.2 2.0 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|242399244|ref|YP_002994668.1| - 0.18 11.5 2.2 0.9 9.2 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4423) DUF92 PF01940.16 gi|242399245|ref|YP_002994669.1| - 1.3e-51 175.4 8.7 2.1e-51 174.6 8.7 1.3 1 1 0 1 1 1 1 Integral membrane protein DUF92 Ribosomal_S3Ae PF01015.18 gi|242399246|ref|YP_002994670.1| - 2.2e-68 229.9 1.2 2.5e-68 229.7 1.2 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Transglut_i_TM PF14400.6 gi|242399246|ref|YP_002994670.1| - 0.096 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Inactive transglutaminase fused to 7 transmembrane helices FAM177 PF14774.6 gi|242399247|ref|YP_002994671.1| - 0.13 12.6 0.0 0.14 12.6 0.0 1.1 1 0 0 1 1 1 0 FAM177 family DHHA1 PF02272.19 gi|242399248|ref|YP_002994672.1| - 8.6e-23 81.3 4.6 1.6e-22 80.4 1.7 2.8 3 0 0 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|242399248|ref|YP_002994672.1| - 0.0061 16.8 0.5 0.017 15.3 0.2 2.0 1 1 1 2 2 2 1 DHH family YqzH PF14164.6 gi|242399248|ref|YP_002994672.1| - 0.05 13.7 0.1 0.23 11.6 0.1 2.1 2 0 0 2 2 2 0 YqzH-like protein Ribosomal_S13_N PF08069.12 gi|242399249|ref|YP_002994673.1| - 5e-27 93.7 0.1 1e-26 92.8 0.1 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|242399249|ref|YP_002994673.1| - 9.5e-19 67.4 0.7 1.4e-18 66.9 0.7 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 DUF5340 PF17275.2 gi|242399249|ref|YP_002994673.1| - 0.0032 17.5 0.1 0.24 11.6 0.1 2.3 2 0 0 2 2 2 1 Family of unknown function (DUF5340) cwf21 PF08312.12 gi|242399249|ref|YP_002994673.1| - 0.023 14.8 0.0 2.2 8.5 0.0 2.5 2 1 0 2 2 2 0 cwf21 domain DUF4817 PF16087.5 gi|242399249|ref|YP_002994673.1| - 0.085 12.7 0.1 2.1 8.2 0.1 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain (DUF4817) UPF0728 PF15092.6 gi|242399249|ref|YP_002994673.1| - 0.17 11.7 0.0 0.43 10.5 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0728 Cas_Cas6 PF01881.16 gi|242399251|ref|YP_002994675.1| - 2.9e-32 112.2 1.4 2.9e-32 112.2 1.4 1.6 2 0 0 2 2 2 1 CRISPR associated protein Cas6 Glycos_transf_4 PF00953.21 gi|242399252|ref|YP_002994676.1| - 2.8e-32 111.9 15.5 5.8e-32 110.9 15.5 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 4 DUF3278 PF11683.8 gi|242399252|ref|YP_002994676.1| - 2.8 8.0 0.0 2.8 8.0 0.0 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF3278) Glycos_transf_2 PF00535.26 gi|242399253|ref|YP_002994677.1| - 6.4e-26 91.2 0.1 4.1e-25 88.5 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferase family 2 HAD_2 PF13419.6 gi|242399253|ref|YP_002994677.1| - 4.7e-23 82.2 1.3 1.9e-22 80.2 0.1 2.4 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242399253|ref|YP_002994677.1| - 4e-13 50.1 0.1 1.1e-08 35.6 0.0 2.6 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|242399253|ref|YP_002994677.1| - 8e-08 32.9 0.0 1.6e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Glyco_tranf_2_3 PF13641.6 gi|242399253|ref|YP_002994677.1| - 5.3e-05 23.2 0.0 9.1e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Hydrolase_6 PF13344.6 gi|242399253|ref|YP_002994677.1| - 0.0001 22.3 0.0 0.00048 20.2 0.0 2.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|242399253|ref|YP_002994677.1| - 0.00029 20.8 0.0 0.0007 19.6 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Glyco_tranf_2_4 PF13704.6 gi|242399253|ref|YP_002994677.1| - 0.00074 20.0 0.0 0.0016 18.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Acid_PPase PF12689.7 gi|242399253|ref|YP_002994677.1| - 0.034 14.0 0.1 0.22 11.4 0.1 2.3 1 1 0 1 1 1 0 Acid Phosphatase PNK3P PF08645.11 gi|242399253|ref|YP_002994677.1| - 0.049 13.3 0.1 0.33 10.6 0.0 2.3 2 1 0 2 2 2 0 Polynucleotide kinase 3 phosphatase DUF2304 PF10066.9 gi|242399254|ref|YP_002994678.1| - 1e-22 80.3 4.1 1.2e-22 80.1 4.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) DUF4577 PF15145.6 gi|242399254|ref|YP_002994678.1| - 0.14 12.2 0.4 0.14 12.2 0.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4577) DUF948 PF06103.11 gi|242399254|ref|YP_002994678.1| - 0.28 11.5 0.1 0.28 11.5 0.1 2.0 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) LMBR1 PF04791.16 gi|242399254|ref|YP_002994678.1| - 0.59 9.0 4.3 0.63 8.9 2.5 1.7 1 1 1 2 2 2 0 LMBR1-like membrane protein dCMP_cyt_deam_1 PF00383.23 gi|242399255|ref|YP_002994679.1| - 4.3e-28 97.2 0.1 6.6e-28 96.6 0.1 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|242399255|ref|YP_002994679.1| - 4.3e-20 71.9 0.0 5.9e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 MafB19-like deaminase APOBEC3 PF18771.1 gi|242399255|ref|YP_002994679.1| - 0.01 16.0 0.0 0.017 15.3 0.0 1.5 1 1 0 1 1 1 0 APOBEC3 Bd3614-deam PF14439.6 gi|242399255|ref|YP_002994679.1| - 0.029 14.5 0.1 0.048 13.7 0.1 1.5 1 1 0 1 1 1 0 Bd3614-like deaminase Peptidase_M48 PF01435.18 gi|242399256|ref|YP_002994680.1| - 1.2e-23 83.9 0.0 2e-23 83.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|242399256|ref|YP_002994680.1| - 3e-06 26.6 0.9 1.7e-05 24.2 0.1 2.0 1 1 1 2 2 2 1 BlaR1 peptidase M56 AGTRAP PF06396.11 gi|242399256|ref|YP_002994680.1| - 0.0068 16.2 0.3 0.022 14.6 0.3 1.8 1 1 1 2 2 2 1 Angiotensin II, type I receptor-associated protein (AGTRAP) PhoR PF11808.8 gi|242399256|ref|YP_002994680.1| - 7.1 7.1 8.3 45 4.6 0.0 2.3 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR Penicillinase_R PF03965.16 gi|242399257|ref|YP_002994681.1| - 3.4e-18 66.1 0.4 3.9e-18 65.9 0.4 1.1 1 0 0 1 1 1 1 Penicillinase repressor Cdc6_C PF09079.11 gi|242399257|ref|YP_002994681.1| - 0.0014 18.6 0.4 0.0035 17.3 0.4 1.6 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain FUR PF01475.19 gi|242399257|ref|YP_002994681.1| - 0.013 15.7 0.1 0.019 15.1 0.1 1.4 1 1 0 1 1 1 0 Ferric uptake regulator family Replic_Relax PF13814.6 gi|242399257|ref|YP_002994681.1| - 0.079 13.0 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation PPR_2 PF13041.6 gi|242399257|ref|YP_002994681.1| - 0.097 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 PPR repeat family HTH_20 PF12840.7 gi|242399257|ref|YP_002994681.1| - 0.11 12.5 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Aminotran_1_2 PF00155.21 gi|242399258|ref|YP_002994682.1| - 1.3e-44 152.9 0.0 1.5e-44 152.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|242399258|ref|YP_002994682.1| - 3.1e-08 32.8 0.0 1.2e-07 30.9 0.0 1.9 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|242399258|ref|YP_002994682.1| - 9.3e-06 25.1 0.0 1.7e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|242399258|ref|YP_002994682.1| - 0.00032 20.1 0.0 0.00048 19.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family 2-Hacid_dh_C PF02826.19 gi|242399259|ref|YP_002994683.1| - 2e-70 235.8 0.0 2.9e-70 235.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|242399259|ref|YP_002994683.1| - 7.6e-40 135.7 0.0 8.7e-40 135.5 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|242399259|ref|YP_002994683.1| - 2.3e-08 34.4 0.1 4.8e-08 33.3 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|242399259|ref|YP_002994683.1| - 1.7e-05 24.5 0.1 4e-05 23.2 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|242399259|ref|YP_002994683.1| - 0.00075 20.0 0.0 0.0018 18.8 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|242399259|ref|YP_002994683.1| - 0.039 13.2 0.1 0.11 11.8 0.1 1.7 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|242399259|ref|YP_002994683.1| - 0.057 13.9 0.1 0.28 11.6 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding DUF72 PF01904.18 gi|242399260|ref|YP_002994684.1| - 1.3e-37 130.0 0.9 1.7e-37 129.6 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Fer4_7 PF12838.7 gi|242399261|ref|YP_002994685.1| - 2.3e-14 53.7 19.7 3.4e-09 37.2 10.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|242399261|ref|YP_002994685.1| - 5.7e-13 48.1 12.5 1.3e-08 34.3 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|242399261|ref|YP_002994685.1| - 2.9e-11 43.3 8.1 4.4e-11 42.7 8.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242399261|ref|YP_002994685.1| - 1.8e-09 37.1 12.1 4.9e-08 32.6 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|242399261|ref|YP_002994685.1| - 2.9e-09 36.6 12.6 2e-08 34.0 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|242399261|ref|YP_002994685.1| - 1.5e-08 34.7 8.7 2.4e-08 34.0 8.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|242399261|ref|YP_002994685.1| - 3.1e-08 33.6 10.2 9.4e-08 32.1 10.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|242399261|ref|YP_002994685.1| - 1.7e-06 28.9 10.6 0.0038 18.1 2.8 2.3 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|242399261|ref|YP_002994685.1| - 2.2e-05 25.1 4.6 0.02 15.6 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|242399261|ref|YP_002994685.1| - 2.2e-05 24.6 11.4 0.0016 18.8 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|242399261|ref|YP_002994685.1| - 2.9e-05 24.7 17.2 0.017 16.0 4.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|242399261|ref|YP_002994685.1| - 0.00011 22.6 9.3 0.065 13.8 0.7 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|242399261|ref|YP_002994685.1| - 0.00025 21.4 8.8 0.095 13.2 1.7 2.2 1 1 3 4 4 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|242399261|ref|YP_002994685.1| - 0.0055 17.2 9.4 0.13 12.9 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|242399261|ref|YP_002994685.1| - 0.016 15.4 10.3 0.14 12.3 10.3 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|242399261|ref|YP_002994685.1| - 0.069 14.0 6.4 0.55 11.1 0.8 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain NADHdh PF00146.21 gi|242399262|ref|YP_002994686.1| - 6.6e-66 222.6 24.8 8e-66 222.4 24.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF4714 PF15833.5 gi|242399262|ref|YP_002994686.1| - 0.22 11.5 0.8 9.5 6.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4714) Complex1_49kDa PF00346.19 gi|242399263|ref|YP_002994687.1| - 3.5e-62 210.0 0.2 2.3e-60 204.0 0.2 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|242399263|ref|YP_002994687.1| - 1.9e-18 66.7 3.0 1e-13 51.0 0.0 3.3 2 1 1 3 3 3 3 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|242399264|ref|YP_002994688.1| - 1.6e-19 70.8 0.0 2.1e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|242399265|ref|YP_002994689.1| - 2.1e-28 98.8 0.1 2.4e-28 98.6 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Proton_antipo_M PF00361.20 gi|242399267|ref|YP_002994691.1| - 8.1e-51 173.0 23.8 8.1e-51 173.0 23.8 2.5 3 1 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|242399267|ref|YP_002994691.1| - 0.0001 22.3 1.2 0.0001 22.3 1.2 4.3 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TMEM43 PF07787.12 gi|242399267|ref|YP_002994691.1| - 7.6 5.8 5.1 2.1 7.7 1.2 2.1 2 0 0 2 2 2 0 Transmembrane protein 43 Oxidored_q2 PF00420.24 gi|242399268|ref|YP_002994692.1| - 1.2e-29 102.0 3.9 1.5e-29 101.7 3.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MnhB PF04039.13 gi|242399269|ref|YP_002994693.1| - 4.7e-28 98.0 9.7 6.1e-28 97.6 9.7 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2105 PF09878.9 gi|242399269|ref|YP_002994693.1| - 0.11 12.2 4.6 0.035 13.8 2.2 1.6 2 1 0 2 2 2 0 Predicted membrane protein (DUF2105) DUF4040 PF13244.6 gi|242399271|ref|YP_002994695.1| - 2.1e-19 69.4 6.0 2.7e-19 69.1 6.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) SLATT_3 PF18184.1 gi|242399271|ref|YP_002994695.1| - 0.65 10.1 2.5 0.85 9.7 2.5 1.2 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 3 PhaG_MnhG_YufB PF03334.14 gi|242399272|ref|YP_002994696.1| - 1.7e-26 92.3 7.6 2.1e-26 92.0 7.6 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4191 PF13829.6 gi|242399272|ref|YP_002994696.1| - 0.052 12.9 2.3 0.032 13.6 1.0 1.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) MrpF_PhaF PF04066.13 gi|242399273|ref|YP_002994697.1| - 8.9e-18 64.4 8.8 8.9e-18 64.4 8.8 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MtN3_slv PF03083.16 gi|242399273|ref|YP_002994697.1| - 0.069 13.2 3.2 0.083 12.9 3.2 1.3 1 1 0 1 1 1 0 Sugar efflux transporter for intercellular exchange MNHE PF01899.16 gi|242399274|ref|YP_002994698.1| - 1.1e-36 125.8 0.1 1.2e-36 125.6 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit AI-2E_transport PF01594.16 gi|242399274|ref|YP_002994698.1| - 0.088 11.9 2.8 0.21 10.7 3.0 1.5 2 0 0 2 2 2 0 AI-2E family transporter HPP PF04982.13 gi|242399274|ref|YP_002994698.1| - 0.089 13.0 0.2 0.13 12.5 0.2 1.2 1 0 0 1 1 1 0 HPP family Caps_synth_CapC PF14102.6 gi|242399274|ref|YP_002994698.1| - 0.094 13.2 2.1 0.14 12.6 2.1 1.3 1 0 0 1 1 1 0 Capsule biosynthesis CapC Rhomboid PF01694.22 gi|242399274|ref|YP_002994698.1| - 0.21 11.6 2.1 0.3 11.1 2.1 1.2 1 0 0 1 1 1 0 Rhomboid family FtsX PF02687.21 gi|242399274|ref|YP_002994698.1| - 0.24 11.9 3.5 0.4 11.2 3.5 1.4 1 0 0 1 1 1 0 FtsX-like permease family Fer4 PF00037.27 gi|242399275|ref|YP_002994699.1| - 1e-29 101.1 32.2 6.1e-08 32.2 3.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|242399275|ref|YP_002994699.1| - 1.3e-26 92.9 64.4 3.4e-10 40.4 11.5 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|242399275|ref|YP_002994699.1| - 1.2e-18 66.3 34.3 3.8e-06 26.7 3.1 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|242399275|ref|YP_002994699.1| - 4.3e-17 62.0 56.2 5.4e-07 29.6 12.9 4.0 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242399275|ref|YP_002994699.1| - 1.3e-16 60.4 51.6 8.3e-09 35.4 10.5 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|242399275|ref|YP_002994699.1| - 3.3e-16 59.2 29.2 3.9e-10 39.7 8.0 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242399275|ref|YP_002994699.1| - 5.3e-16 57.7 26.9 2.4e-05 24.1 1.3 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|242399275|ref|YP_002994699.1| - 7.6e-16 58.8 26.0 3.4e-05 24.7 0.1 4.2 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|242399275|ref|YP_002994699.1| - 1e-10 42.0 24.8 0.0001 22.8 11.1 3.6 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|242399275|ref|YP_002994699.1| - 1.8e-10 40.5 34.9 0.0013 19.1 2.7 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|242399275|ref|YP_002994699.1| - 2.8e-10 40.5 29.0 4e-05 24.0 8.9 3.5 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|242399275|ref|YP_002994699.1| - 5e-09 36.6 23.1 0.00019 21.9 0.4 4.3 4 0 0 4 4 4 3 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|242399275|ref|YP_002994699.1| - 9.2e-07 29.4 44.2 0.0055 17.6 6.4 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_22 PF17179.4 gi|242399275|ref|YP_002994699.1| - 0.00023 21.9 28.7 0.2 12.6 1.2 4.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|242399275|ref|YP_002994699.1| - 0.0042 17.8 30.9 0.46 11.3 1.6 4.3 2 2 2 4 4 4 3 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|242399275|ref|YP_002994699.1| - 0.0049 17.1 30.7 0.17 12.1 2.6 3.6 1 1 2 3 3 3 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|242399275|ref|YP_002994699.1| - 0.071 13.2 21.2 0.11 12.7 1.9 3.9 1 1 3 4 4 4 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S NADHdh PF00146.21 gi|242399276|ref|YP_002994700.1| - 1.1e-57 195.6 15.7 1.4e-57 195.3 15.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|242399277|ref|YP_002994701.1| - 2.7e-56 190.7 0.1 1.3e-54 185.1 0.1 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|242399277|ref|YP_002994701.1| - 7.2e-20 71.4 4.4 1.7e-14 53.6 0.2 3.1 2 2 0 3 3 3 2 Nickel-dependent hydrogenase DUF1722 PF08349.11 gi|242399277|ref|YP_002994701.1| - 0.023 15.0 0.0 0.047 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1722) Complex1_30kDa PF00329.19 gi|242399278|ref|YP_002994702.1| - 1.4e-20 74.2 0.0 2.1e-20 73.6 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DOPA_dioxygen PF08883.11 gi|242399278|ref|YP_002994702.1| - 0.055 13.6 0.0 0.083 13.1 0.0 1.2 1 0 0 1 1 1 0 Dopa 4,5-dioxygenase family Oxidored_q6 PF01058.22 gi|242399279|ref|YP_002994703.1| - 7.1e-27 93.8 0.0 9.1e-27 93.5 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Glucos_trans_II PF14264.6 gi|242399280|ref|YP_002994704.1| - 0.0082 15.5 0.4 0.0093 15.4 0.4 1.0 1 0 0 1 1 1 1 Glucosyl transferase GtrII UcrQ PF02939.16 gi|242399280|ref|YP_002994704.1| - 0.14 12.1 0.2 0.47 10.4 0.0 1.9 2 0 0 2 2 2 0 UcrQ family LapA_dom PF06305.11 gi|242399280|ref|YP_002994704.1| - 0.63 9.9 4.5 7.1 6.5 0.2 2.2 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Proton_antipo_M PF00361.20 gi|242399281|ref|YP_002994705.1| - 1.2e-57 195.3 26.5 1.2e-57 195.3 26.5 2.5 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|242399281|ref|YP_002994705.1| - 8.7e-10 38.5 0.3 8.7e-10 38.5 0.3 2.7 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADHdeh_related PF10125.9 gi|242399281|ref|YP_002994705.1| - 1.2e-08 34.6 7.3 1.2e-08 34.6 7.3 2.9 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.24 gi|242399282|ref|YP_002994706.1| - 2.8e-25 88.0 4.0 3.4e-25 87.7 4.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|242399282|ref|YP_002994706.1| - 0.0015 18.5 2.3 0.0015 18.5 2.3 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) YfhO PF09586.10 gi|242399282|ref|YP_002994706.1| - 0.069 11.4 2.3 0.085 11.1 2.3 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Saf_2TM PF18303.1 gi|242399282|ref|YP_002994706.1| - 0.99 9.0 3.3 0.65 9.6 0.2 1.8 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain Adeno_E3_CR2 PF02439.15 gi|242399282|ref|YP_002994706.1| - 4.5 7.1 7.4 2.4 8.0 0.6 2.3 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 MnhB PF04039.13 gi|242399283|ref|YP_002994707.1| - 2.8e-25 89.0 15.1 3.4e-25 88.7 15.1 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter TMEM100 PF16311.5 gi|242399283|ref|YP_002994707.1| - 0.19 11.3 0.6 0.28 10.8 0.6 1.4 1 0 0 1 1 1 0 Transmembrane protein 100 DUF2106 PF09879.9 gi|242399284|ref|YP_002994708.1| - 0.044 13.3 0.1 0.065 12.8 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) DUF4040 PF13244.6 gi|242399285|ref|YP_002994709.1| - 8.8e-18 64.2 4.9 1e-17 64.0 4.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|242399285|ref|YP_002994709.1| - 0.0055 16.4 0.0 0.0075 16.0 0.0 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TspO_MBR PF03073.15 gi|242399285|ref|YP_002994709.1| - 0.013 15.5 3.9 0.015 15.3 3.9 1.0 1 0 0 1 1 1 0 TspO/MBR family PhaG_MnhG_YufB PF03334.14 gi|242399286|ref|YP_002994710.1| - 1.8e-23 82.5 3.6 2.2e-23 82.3 3.6 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MASE3 PF17159.4 gi|242399286|ref|YP_002994710.1| - 0.0019 17.9 2.3 0.0023 17.6 2.3 1.1 1 0 0 1 1 1 1 Membrane-associated sensor domain 7TM_GPCR_Sri PF10327.9 gi|242399286|ref|YP_002994710.1| - 0.011 14.9 0.4 0.011 14.9 0.4 1.4 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Sri Rhomboid PF01694.22 gi|242399286|ref|YP_002994710.1| - 0.032 14.2 3.5 0.057 13.4 3.5 1.4 1 1 0 1 1 1 0 Rhomboid family TssN PF17555.2 gi|242399286|ref|YP_002994710.1| - 0.078 12.3 1.9 0.09 12.2 1.9 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF3021 PF11457.8 gi|242399286|ref|YP_002994710.1| - 0.099 13.0 2.2 0.12 12.7 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) MrpF_PhaF PF04066.13 gi|242399287|ref|YP_002994711.1| - 1.3e-20 73.5 6.2 1.3e-20 73.5 6.2 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2108 PF09881.9 gi|242399287|ref|YP_002994711.1| - 0.7 9.9 11.6 0.039 13.9 5.9 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) MNHE PF01899.16 gi|242399288|ref|YP_002994712.1| - 1e-42 145.4 0.8 1.1e-42 145.2 0.8 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit DUF1003 PF06210.11 gi|242399288|ref|YP_002994712.1| - 1.2 9.2 3.3 2 8.5 3.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) TRAM PF01938.20 gi|242399289|ref|YP_002994713.1| - 8.6e-15 54.5 2.8 9.7e-15 54.3 2.8 1.0 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|242399289|ref|YP_002994713.1| - 0.033 13.9 2.6 0.071 12.9 0.8 2.2 2 1 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.23 gi|242399290|ref|YP_002994714.1| - 2.7e-44 151.6 0.2 3.8e-44 151.1 0.2 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|242399290|ref|YP_002994714.1| - 6.4e-20 70.1 27.7 8.7e-10 37.9 2.5 4.8 2 1 4 6 6 6 6 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|242399290|ref|YP_002994714.1| - 4e-17 63.0 0.0 5.7e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|242399290|ref|YP_002994714.1| - 3.4e-12 45.9 18.1 5.1e-07 29.3 0.3 4.5 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|242399290|ref|YP_002994714.1| - 4.1e-05 23.4 0.0 6.4e-05 22.8 0.0 1.4 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|242399290|ref|YP_002994714.1| - 0.00038 20.3 0.0 0.00057 19.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 ABC_transp_aux PF09822.9 gi|242399290|ref|YP_002994714.1| - 0.097 12.1 0.1 0.2 11.1 0.0 1.6 2 0 0 2 2 2 0 ABC-type uncharacterized transport system Glyco_tranf_2_3 PF13641.6 gi|242399290|ref|YP_002994714.1| - 0.15 12.0 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 DUF835 PF05763.12 gi|242399291|ref|YP_002994715.1| - 9.8e-33 112.8 1.9 1.4e-32 112.3 1.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF2070 PF09843.9 gi|242399291|ref|YP_002994715.1| - 0.061 11.6 10.1 0.08 11.2 10.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CBS PF00571.28 gi|242399292|ref|YP_002994716.1| - 5.5e-36 122.8 15.8 8.7e-17 61.3 0.6 4.4 4 0 0 4 4 4 4 CBS domain Hrs_helical PF12210.8 gi|242399292|ref|YP_002994716.1| - 0.09 13.3 0.2 0.39 11.3 0.1 2.0 2 0 0 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate DUF1508 PF07411.12 gi|242399292|ref|YP_002994716.1| - 0.18 11.7 0.0 0.84 9.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1508) DUF2238 PF09997.9 gi|242399293|ref|YP_002994717.1| - 0.0033 17.2 0.6 0.0049 16.7 0.6 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2238) VanZ PF04892.12 gi|242399293|ref|YP_002994717.1| - 0.004 17.8 0.9 0.0074 16.9 0.9 1.5 1 1 0 1 1 1 1 VanZ like family COX7a PF02238.15 gi|242399293|ref|YP_002994717.1| - 0.0087 16.4 0.0 0.028 14.8 0.0 1.8 1 0 0 1 1 1 1 Cytochrome c oxidase subunit VII CbiM PF01891.16 gi|242399294|ref|YP_002994718.1| - 6.2e-62 209.1 19.7 6.9e-62 209.0 19.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3149 PF11346.8 gi|242399294|ref|YP_002994718.1| - 0.0016 18.0 0.2 0.12 12.1 0.0 3.3 3 0 0 3 3 3 1 Protein of unknown function (DUF3149) PDGLE PF13190.6 gi|242399295|ref|YP_002994719.1| - 1.5e-05 24.8 3.0 1.9e-05 24.5 0.0 2.1 1 1 1 2 2 2 1 PDGLE domain PsbX PF06596.11 gi|242399295|ref|YP_002994719.1| - 0.042 13.9 3.7 0.15 12.1 0.1 2.2 2 0 0 2 2 2 0 Photosystem II reaction centre X protein (PsbX) CbiQ PF02361.16 gi|242399296|ref|YP_002994720.1| - 5.3e-27 94.9 11.6 6.6e-27 94.5 11.6 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|242399297|ref|YP_002994721.1| - 1.8e-30 106.3 0.0 2.5e-30 105.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242399297|ref|YP_002994721.1| - 7.2e-09 35.9 1.5 0.00017 21.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|242399297|ref|YP_002994721.1| - 2.3e-08 33.7 0.1 1.1e-07 31.6 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|242399297|ref|YP_002994721.1| - 0.00047 19.9 0.0 0.00083 19.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|242399297|ref|YP_002994721.1| - 0.00095 19.7 1.3 0.0011 19.6 1.3 1.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|242399297|ref|YP_002994721.1| - 0.0011 19.0 0.9 0.09 12.7 0.1 2.1 1 1 1 2 2 2 1 NTPase RsgA_GTPase PF03193.16 gi|242399297|ref|YP_002994721.1| - 0.0026 17.7 0.1 0.0045 16.9 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase MeaB PF03308.16 gi|242399297|ref|YP_002994721.1| - 0.0061 15.6 0.0 0.0087 15.1 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|242399297|ref|YP_002994721.1| - 0.028 14.0 0.1 0.053 13.1 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.6 gi|242399297|ref|YP_002994721.1| - 0.056 13.1 1.0 0.17 11.5 0.4 1.7 1 1 1 2 2 2 0 AAA ATPase domain Elf4 PF07011.11 gi|242399297|ref|YP_002994721.1| - 0.081 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Early Flowering 4 domain SbcCD_C PF13558.6 gi|242399297|ref|YP_002994721.1| - 0.084 13.1 0.1 1.4 9.2 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.15 gi|242399297|ref|YP_002994721.1| - 0.12 12.2 0.0 0.32 10.9 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain DLIC PF05783.11 gi|242399297|ref|YP_002994721.1| - 0.12 11.1 0.1 0.17 10.7 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) IstB_IS21 PF01695.17 gi|242399297|ref|YP_002994721.1| - 0.16 11.7 0.1 15 5.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|242399297|ref|YP_002994721.1| - 0.16 12.1 0.1 0.24 11.5 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|242399297|ref|YP_002994721.1| - 0.17 11.6 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Phosphorylase PF00343.20 gi|242399298|ref|YP_002994722.1| - 6.3e-43 147.1 0.0 1.8e-30 105.9 0.0 4.1 3 1 0 3 3 3 3 Carbohydrate phosphorylase DUF3417 PF11897.8 gi|242399298|ref|YP_002994722.1| - 4.4e-29 101.1 2.9 4.4e-29 101.1 2.9 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) AA_kinase PF00696.28 gi|242399299|ref|YP_002994723.1| - 2.2e-35 122.4 0.4 4.3e-35 121.5 0.4 1.4 1 1 0 1 1 1 1 Amino acid kinase family Pyr_redox_2 PF07992.14 gi|242399300|ref|YP_002994724.1| - 2.8e-66 223.8 2.1 2.8e-66 223.8 2.1 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|242399300|ref|YP_002994724.1| - 1.2e-22 80.2 8.3 5e-17 62.2 0.9 4.4 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|242399300|ref|YP_002994724.1| - 1.1e-17 64.3 0.4 3.9e-17 62.5 0.0 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|242399300|ref|YP_002994724.1| - 8.6e-11 41.6 0.2 2.2e-09 37.0 0.1 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|242399300|ref|YP_002994724.1| - 3.6e-07 29.2 6.3 0.48 9.1 0.0 4.1 3 1 1 4 4 4 3 HI0933-like protein GIDA PF01134.22 gi|242399300|ref|YP_002994724.1| - 1.2e-05 24.6 0.4 0.083 12.0 0.1 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|242399300|ref|YP_002994724.1| - 1.3e-05 24.6 0.1 0.04 13.2 0.1 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|242399300|ref|YP_002994724.1| - 1.8e-05 24.0 4.7 0.06 12.4 1.2 3.3 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|242399300|ref|YP_002994724.1| - 2.8e-05 23.9 5.8 0.62 9.6 0.1 4.1 4 0 0 4 4 4 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|242399300|ref|YP_002994724.1| - 0.0003 21.0 0.3 0.64 10.3 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|242399300|ref|YP_002994724.1| - 0.0052 16.2 0.2 0.045 13.1 0.0 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|242399300|ref|YP_002994724.1| - 0.0055 16.3 0.4 0.046 13.3 0.1 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|242399300|ref|YP_002994724.1| - 0.0071 16.2 0.6 0.22 11.4 0.1 2.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glu_dehyd_C PF16912.5 gi|242399300|ref|YP_002994724.1| - 0.039 13.4 1.0 3.6 7.0 0.1 2.6 2 1 1 3 3 3 0 Glucose dehydrogenase C-terminus K_oxygenase PF13434.6 gi|242399300|ref|YP_002994724.1| - 0.043 12.9 0.3 0.69 9.0 0.0 2.5 2 1 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|242399300|ref|YP_002994724.1| - 0.058 12.4 2.7 2 7.4 0.0 3.0 2 1 1 3 3 3 0 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|242399300|ref|YP_002994724.1| - 0.11 12.9 0.9 7 7.2 0.3 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|242399300|ref|YP_002994724.1| - 0.58 9.3 2.9 3.8 6.7 1.4 2.5 2 1 1 3 3 3 0 FAD binding domain Trp_halogenase PF04820.14 gi|242399300|ref|YP_002994724.1| - 0.59 8.9 0.0 0.59 8.9 0.0 2.1 3 0 0 3 3 3 0 Tryptophan halogenase SNF PF00209.18 gi|242399301|ref|YP_002994725.1| - 1.9e-62 211.7 34.0 6.2e-37 127.5 16.8 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family Aminotran_1_2 PF00155.21 gi|242399303|ref|YP_002994727.1| - 1.3e-50 172.6 0.0 1.6e-50 172.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|242399303|ref|YP_002994727.1| - 1.4e-05 24.2 0.0 0.0002 20.4 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|242399303|ref|YP_002994727.1| - 0.00011 20.9 0.0 0.00013 20.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|242399303|ref|YP_002994727.1| - 0.0037 16.2 0.0 0.026 13.4 0.0 1.9 1 1 1 2 2 2 1 Allinase Beta_elim_lyase PF01212.21 gi|242399303|ref|YP_002994727.1| - 0.0042 16.4 0.0 0.0063 15.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|242399303|ref|YP_002994727.1| - 0.011 15.1 0.0 0.015 14.6 0.0 1.1 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Met_gamma_lyase PF06838.11 gi|242399303|ref|YP_002994727.1| - 0.021 13.4 0.1 0.029 12.9 0.1 1.1 1 0 0 1 1 1 0 Methionine gamma-lyase PepX_N PF09168.10 gi|242399303|ref|YP_002994727.1| - 0.15 12.5 0.4 1.1 9.7 0.0 2.1 2 0 0 2 2 2 0 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal UPF0016 PF01169.19 gi|242399304|ref|YP_002994728.1| - 2.4e-22 79.0 5.1 2.7e-22 78.9 5.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein family UPF0016 SdpI PF13630.6 gi|242399304|ref|YP_002994728.1| - 0.9 9.7 0.2 0.9 9.7 0.2 2.2 2 1 0 2 2 2 0 SdpI/YhfL protein family Aminotran_1_2 PF00155.21 gi|242399305|ref|YP_002994729.1| - 2.1e-72 244.3 0.0 2.5e-72 244.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|242399305|ref|YP_002994729.1| - 1.2e-08 34.3 0.0 9.1e-05 21.6 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|242399305|ref|YP_002994729.1| - 1.2e-06 28.0 0.0 2.2e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|242399305|ref|YP_002994729.1| - 0.001 18.4 0.0 0.0018 17.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|242399305|ref|YP_002994729.1| - 0.012 14.1 0.0 0.021 13.4 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|242399305|ref|YP_002994729.1| - 0.044 12.6 0.1 0.42 9.4 0.2 2.2 1 1 0 2 2 2 0 Allinase HU-CCDC81_bac_1 PF18174.1 gi|242399305|ref|YP_002994729.1| - 0.06 13.2 0.0 0.33 10.8 0.0 2.2 3 0 0 3 3 3 0 CCDC81-like prokaryotic HU domain 1 DUF2774 PF11242.8 gi|242399305|ref|YP_002994729.1| - 0.079 13.2 1.1 0.29 11.3 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2774) DUF2303 PF10065.9 gi|242399305|ref|YP_002994729.1| - 0.13 11.4 0.0 0.9 8.6 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2303) CGI-121 PF08617.10 gi|242399306|ref|YP_002994730.1| - 1.2e-06 28.7 0.1 1.6e-06 28.3 0.1 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 PTSIIA_gutA PF03829.13 gi|242399306|ref|YP_002994730.1| - 0.063 13.2 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 PTS system glucitol/sorbitol-specific IIA component RHH_1 PF01402.21 gi|242399307|ref|YP_002994731.1| - 9.3e-10 38.1 0.1 1.3e-09 37.6 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|242399307|ref|YP_002994731.1| - 2.2e-05 24.6 0.0 2.2e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|242399307|ref|YP_002994731.1| - 0.0061 16.5 0.4 0.0089 15.9 0.4 1.5 1 1 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB DUF5440 PF17509.2 gi|242399307|ref|YP_002994731.1| - 0.074 12.7 0.0 0.082 12.5 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5440) Tubulin PF00091.25 gi|242399308|ref|YP_002994732.1| - 9.2e-41 140.2 0.2 2.2e-40 139.0 0.2 1.7 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|242399308|ref|YP_002994732.1| - 3.5e-23 81.7 0.9 1.3e-22 79.9 0.9 2.0 1 0 0 1 1 1 1 FtsZ family, C-terminal domain CTP_transf_like PF01467.26 gi|242399309|ref|YP_002994733.1| - 9.9e-23 80.9 0.1 1.2e-22 80.7 0.1 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|242399309|ref|YP_002994733.1| - 0.0001 22.3 0.8 0.00062 19.7 0.8 2.1 1 1 0 1 1 1 1 FAD synthetase Peripla_BP_2 PF01497.18 gi|242399309|ref|YP_002994733.1| - 0.024 14.2 0.2 0.04 13.5 0.1 1.3 1 1 0 1 1 1 0 Periplasmic binding protein HIGH_NTase1 PF05636.11 gi|242399309|ref|YP_002994733.1| - 0.061 12.5 0.0 0.091 11.9 0.0 1.3 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase PUA PF01472.20 gi|242399310|ref|YP_002994734.1| - 1.5e-24 85.7 1.1 3.3e-24 84.7 1.1 1.6 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|242399310|ref|YP_002994734.1| - 1.5e-06 28.4 3.6 8.1e-06 26.0 3.6 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|242399310|ref|YP_002994734.1| - 1.6e-05 25.1 0.9 8.8e-05 22.7 0.1 2.1 2 0 0 2 2 2 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|242399310|ref|YP_002994734.1| - 0.00059 20.5 0.2 0.00093 19.8 0.2 1.3 1 0 0 1 1 1 1 Pre-PUA-like domain DUF4443 PF14544.6 gi|242399311|ref|YP_002994735.1| - 4.9e-42 142.7 0.1 7.3e-42 142.1 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4443) HrcA_DNA-bdg PF03444.15 gi|242399311|ref|YP_002994735.1| - 0.0016 18.0 0.1 0.0037 16.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_12 PF08461.10 gi|242399311|ref|YP_002994735.1| - 0.006 16.5 0.9 0.015 15.2 0.1 2.2 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.19 gi|242399311|ref|YP_002994735.1| - 0.0089 15.7 0.1 0.015 15.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_5 PF01022.20 gi|242399311|ref|YP_002994735.1| - 0.0098 15.7 0.4 0.025 14.4 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_41 PF14502.6 gi|242399311|ref|YP_002994735.1| - 0.011 15.4 0.4 0.027 14.1 0.4 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|242399311|ref|YP_002994735.1| - 0.016 15.2 0.1 0.03 14.3 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix WGG PF10273.9 gi|242399311|ref|YP_002994735.1| - 0.061 14.0 0.0 0.12 13.0 0.0 1.5 1 0 0 1 1 1 0 Pre-rRNA-processing protein TSR2 TrmB PF01978.19 gi|242399311|ref|YP_002994735.1| - 0.065 13.1 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|242399311|ref|YP_002994735.1| - 0.069 12.7 0.4 0.14 11.7 0.4 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|242399311|ref|YP_002994735.1| - 0.1 12.1 0.0 0.59 9.7 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|242399311|ref|YP_002994735.1| - 0.17 12.1 0.0 0.52 10.5 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|242399311|ref|YP_002994735.1| - 0.22 11.4 0.8 16 5.4 0.0 3.0 3 1 0 3 3 3 0 IclR helix-turn-helix domain Lig_C PF18330.1 gi|242399312|ref|YP_002994736.1| - 3.3e-26 91.7 0.5 6.3e-26 90.8 0.1 1.7 2 0 0 2 2 2 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|242399312|ref|YP_002994736.1| - 2.5e-19 70.2 0.2 3.9e-19 69.5 0.2 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|242399312|ref|YP_002994736.1| - 4e-08 33.2 0.1 0.0042 16.8 0.2 2.2 2 0 0 2 2 2 2 ATP dependent DNA ligase domain SwrA PF17423.2 gi|242399312|ref|YP_002994736.1| - 0.054 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Swarming motility protein Alpha_Helical PF18489.1 gi|242399313|ref|YP_002994737.1| - 3.6e-56 188.8 0.5 4.7e-56 188.4 0.5 1.1 1 0 0 1 1 1 1 Alpha helical domain tRNA_bind PF01588.20 gi|242399313|ref|YP_002994737.1| - 1.9e-20 72.7 0.1 3.3e-20 72.0 0.1 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain APT PF03440.14 gi|242399314|ref|YP_002994738.1| - 0.029 14.3 0.1 0.098 12.6 0.0 1.9 2 0 0 2 2 2 0 Aerolysin/Pertussis toxin (APT) domain TPR_8 PF13181.6 gi|242399314|ref|YP_002994738.1| - 0.051 13.8 2.5 14 6.2 0.0 4.3 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|242399314|ref|YP_002994738.1| - 0.1 12.9 5.5 10 6.5 0.1 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|242399314|ref|YP_002994738.1| - 3.8 7.9 13.2 41 4.6 0.0 5.0 5 0 0 5 5 5 0 Tetratricopeptide repeat zf-ACC PF17848.1 gi|242399315|ref|YP_002994739.1| - 2.7e-05 24.1 1.2 0.12 12.5 0.3 2.5 2 0 0 2 2 2 2 Acetyl-coA carboxylase zinc finger domain TF_Zn_Ribbon PF08271.12 gi|242399315|ref|YP_002994739.1| - 0.00097 18.6 1.7 0.94 9.0 0.2 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|242399315|ref|YP_002994739.1| - 0.0015 17.9 0.8 1.1 8.7 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-Di19 PF05605.12 gi|242399315|ref|YP_002994739.1| - 0.014 15.6 0.3 5.2 7.4 0.1 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Rad50_zn_hook PF04423.14 gi|242399315|ref|YP_002994739.1| - 0.02 14.7 0.4 6 6.8 0.0 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C2H2 PF00096.26 gi|242399315|ref|YP_002994739.1| - 0.038 14.5 1.1 1.8 9.2 0.3 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type YacG PF03884.14 gi|242399315|ref|YP_002994739.1| - 0.038 13.7 0.5 6.3 6.6 0.1 2.3 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG MqsA_antitoxin PF15731.5 gi|242399315|ref|YP_002994739.1| - 0.038 14.1 0.6 0.33 11.1 0.6 2.2 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA zinc_ribbon_4 PF13717.6 gi|242399315|ref|YP_002994739.1| - 0.048 13.6 0.6 4.2 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|242399315|ref|YP_002994739.1| - 0.05 13.2 0.8 1.8 8.2 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|242399315|ref|YP_002994739.1| - 0.051 13.3 4.4 0.51 10.1 0.7 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|242399315|ref|YP_002994739.1| - 0.064 13.2 0.4 9.6 6.3 0.0 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C2H2_4 PF13894.6 gi|242399315|ref|YP_002994739.1| - 0.11 13.4 2.0 3.3 8.8 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger PhnA_Zn_Ribbon PF08274.12 gi|242399315|ref|YP_002994739.1| - 0.11 12.5 2.5 6.2 6.9 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|242399315|ref|YP_002994739.1| - 0.11 12.6 2.8 1.1 9.5 0.7 2.4 2 1 0 2 2 2 0 Zinc ribbon domain DiS_P_DiS PF06750.13 gi|242399315|ref|YP_002994739.1| - 0.12 12.5 0.1 2.6 8.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Prok-RING_1 PF14446.6 gi|242399315|ref|YP_002994739.1| - 0.13 12.2 0.9 13 5.8 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Zn_ribbon_SprT PF17283.2 gi|242399315|ref|YP_002994739.1| - 0.13 12.2 1.0 2.9 7.9 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain YhfH PF14149.6 gi|242399315|ref|YP_002994739.1| - 0.14 12.1 1.7 7.5 6.6 0.2 2.3 2 0 0 2 2 2 0 YhfH-like protein Cys_rich_CPXG PF14255.6 gi|242399315|ref|YP_002994739.1| - 0.18 11.7 1.5 24 4.9 0.3 2.8 3 0 0 3 3 3 0 Cysteine-rich CPXCG zf-NADH-PPase PF09297.11 gi|242399315|ref|YP_002994739.1| - 0.2 11.4 1.6 1.9 8.2 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-C2H2_12 PF18112.1 gi|242399315|ref|YP_002994739.1| - 0.2 12.2 2.6 8.8 6.9 0.3 2.5 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain CpXC PF14353.6 gi|242399315|ref|YP_002994739.1| - 0.3 11.2 1.4 3.2 7.8 1.4 2.2 1 1 0 1 1 1 0 CpXC protein DUF1610 PF07754.11 gi|242399315|ref|YP_002994739.1| - 0.34 10.9 8.9 0.19 11.7 1.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-C2H2_6 PF13912.6 gi|242399315|ref|YP_002994739.1| - 0.51 10.4 1.8 2.7 8.1 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.6 gi|242399315|ref|YP_002994739.1| - 0.65 10.5 3.8 2.8 8.5 0.7 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf_C2H2_10 PF18414.1 gi|242399315|ref|YP_002994739.1| - 0.74 9.4 5.2 1.3 8.7 1.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-C2HC_2 PF13913.6 gi|242399315|ref|YP_002994739.1| - 5.1 7.1 7.6 5.3 7.1 2.0 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DHHA1 PF02272.19 gi|242399316|ref|YP_002994740.1| - 7.7e-13 49.0 1.8 6.8e-12 46.0 1.8 2.2 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|242399316|ref|YP_002994740.1| - 2.8e-12 46.8 0.1 7e-12 45.5 0.1 1.7 1 0 0 1 1 1 1 DHH family SPOC PF07744.13 gi|242399316|ref|YP_002994740.1| - 0.037 14.0 0.6 3.7 7.4 0.2 2.3 2 1 0 2 2 2 0 SPOC domain DUF3194 PF11419.8 gi|242399317|ref|YP_002994741.1| - 7.2e-23 80.7 3.2 9.3e-23 80.4 3.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Prefoldin_2 PF01920.20 gi|242399318|ref|YP_002994742.1| - 4.7e-22 78.0 18.5 5.3e-22 77.8 18.5 1.0 1 0 0 1 1 1 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.6 gi|242399318|ref|YP_002994742.1| - 0.00023 20.6 4.9 0.00028 20.3 4.9 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV FPP PF05911.11 gi|242399318|ref|YP_002994742.1| - 0.00029 19.2 9.6 0.00035 18.9 9.6 1.0 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil CdvA PF18822.1 gi|242399318|ref|YP_002994742.1| - 0.00064 19.5 11.5 0.013 15.3 0.5 2.2 2 0 0 2 2 2 2 CdvA-like coiled-coil domain Ead_Ea22 PF13935.6 gi|242399318|ref|YP_002994742.1| - 0.00068 20.3 6.6 0.0067 17.1 6.6 2.0 1 1 0 1 1 1 1 Ead/Ea22-like protein Spc7 PF08317.11 gi|242399318|ref|YP_002994742.1| - 0.0014 17.6 13.9 0.094 11.6 0.6 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein RasGAP_C PF03836.15 gi|242399318|ref|YP_002994742.1| - 0.0016 18.6 7.8 0.36 11.0 2.7 2.2 2 0 0 2 2 2 2 RasGAP C-terminus DHR10 PF18595.1 gi|242399318|ref|YP_002994742.1| - 0.0023 18.0 15.7 0.073 13.1 7.4 2.0 2 0 0 2 2 2 2 Designed helical repeat protein 10 domain DUF3416 PF11896.8 gi|242399318|ref|YP_002994742.1| - 0.0025 18.1 1.0 0.0034 17.7 1.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3416) PspA_IM30 PF04012.12 gi|242399318|ref|YP_002994742.1| - 0.0046 16.6 13.0 0.0091 15.6 13.0 1.4 1 1 0 1 1 1 1 PspA/IM30 family DUF3450 PF11932.8 gi|242399318|ref|YP_002994742.1| - 0.0052 16.1 14.3 0.015 14.6 3.9 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3450) Laminin_II PF06009.12 gi|242399318|ref|YP_002994742.1| - 0.0054 16.7 10.7 0.0077 16.2 10.7 1.3 1 0 0 1 1 1 1 Laminin Domain II GAS PF13851.6 gi|242399318|ref|YP_002994742.1| - 0.0057 16.0 11.2 0.15 11.4 5.0 2.0 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding XhlA PF10779.9 gi|242399318|ref|YP_002994742.1| - 0.0066 16.6 6.0 0.0066 16.6 6.0 2.2 2 0 0 2 2 2 1 Haemolysin XhlA DUF2120 PF09893.9 gi|242399318|ref|YP_002994742.1| - 0.0072 16.4 4.5 0.0094 16.1 2.8 1.8 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2120) FlaC_arch PF05377.11 gi|242399318|ref|YP_002994742.1| - 0.0076 16.6 12.4 0.015 15.7 4.6 2.8 2 1 1 3 3 3 1 Flagella accessory protein C (FlaC) DUF4404 PF14357.6 gi|242399318|ref|YP_002994742.1| - 0.0082 16.8 7.2 0.82 10.4 0.3 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4404) Bac_GDH PF05088.12 gi|242399318|ref|YP_002994742.1| - 0.011 13.2 1.6 0.013 13.0 1.6 1.0 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase APG6_N PF17675.1 gi|242399318|ref|YP_002994742.1| - 0.012 16.1 16.4 0.38 11.3 0.8 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region Tropomyosin_1 PF12718.7 gi|242399318|ref|YP_002994742.1| - 0.013 15.6 12.4 0.13 12.5 5.9 2.1 2 0 0 2 2 2 0 Tropomyosin like AAA_11 PF13086.6 gi|242399318|ref|YP_002994742.1| - 0.019 14.8 3.3 0.022 14.5 3.3 1.0 1 0 0 1 1 1 0 AAA domain V_ATPase_I PF01496.19 gi|242399318|ref|YP_002994742.1| - 0.021 12.8 3.6 0.027 12.4 3.6 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MCM_N PF14551.6 gi|242399318|ref|YP_002994742.1| - 0.021 15.4 0.3 0.84 10.3 0.0 2.2 2 0 0 2 2 2 0 MCM N-terminal domain DUF3958 PF13125.6 gi|242399318|ref|YP_002994742.1| - 0.024 14.8 11.7 0.032 14.4 11.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3958) TolA_bind_tri PF16331.5 gi|242399318|ref|YP_002994742.1| - 0.028 14.5 12.8 0.41 10.8 3.2 2.3 2 0 0 2 2 2 0 TolA binding protein trimerisation YscO PF07321.12 gi|242399318|ref|YP_002994742.1| - 0.029 14.3 12.7 0.66 9.9 1.6 2.1 2 0 0 2 2 2 0 Type III secretion protein YscO CENP-F_leu_zip PF10473.9 gi|242399318|ref|YP_002994742.1| - 0.032 14.3 12.7 0.92 9.5 6.5 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prominin PF05478.11 gi|242399318|ref|YP_002994742.1| - 0.033 12.2 7.1 0.045 11.7 7.1 1.2 1 0 0 1 1 1 0 Prominin TPR_MLP1_2 PF07926.12 gi|242399318|ref|YP_002994742.1| - 0.036 14.1 14.7 0.29 11.2 5.6 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein FliJ PF02050.16 gi|242399318|ref|YP_002994742.1| - 0.047 13.9 10.8 0.38 11.0 2.5 2.4 2 0 0 2 2 2 0 Flagellar FliJ protein Exonuc_VII_L PF02601.15 gi|242399318|ref|YP_002994742.1| - 0.048 13.2 3.9 0.056 13.0 3.9 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit SOAR PF16533.5 gi|242399318|ref|YP_002994742.1| - 0.052 13.5 8.9 0.1 12.6 8.9 1.5 1 1 0 1 1 1 0 STIM1 Orai1-activating region DUF4407 PF14362.6 gi|242399318|ref|YP_002994742.1| - 0.06 12.7 4.7 0.073 12.4 4.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FapA PF03961.13 gi|242399318|ref|YP_002994742.1| - 0.065 11.8 9.1 0.081 11.5 9.1 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A ADIP PF11559.8 gi|242399318|ref|YP_002994742.1| - 0.069 13.2 13.2 0.26 11.4 6.5 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding TA0956 PF11513.8 gi|242399318|ref|YP_002994742.1| - 0.071 13.3 0.2 0.11 12.7 0.2 1.5 1 1 0 1 1 1 0 Thermoplasma acidophilum protein TA0956 FUSC PF04632.12 gi|242399318|ref|YP_002994742.1| - 0.074 11.6 0.2 0.087 11.4 0.2 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF641 PF04859.12 gi|242399318|ref|YP_002994742.1| - 0.088 13.1 7.9 0.16 12.3 2.4 2.0 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) NPV_P10 PF05531.12 gi|242399318|ref|YP_002994742.1| - 0.1 13.1 9.2 0.31 11.5 2.0 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein YabA PF06156.13 gi|242399318|ref|YP_002994742.1| - 0.12 13.0 13.3 0.16 12.6 1.9 2.1 1 1 0 2 2 2 0 Initiation control protein YabA DUF4140 PF13600.6 gi|242399318|ref|YP_002994742.1| - 0.13 12.7 12.2 25 5.4 12.2 2.3 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Lambda_tail_I PF06805.12 gi|242399318|ref|YP_002994742.1| - 0.14 12.6 0.0 11 6.4 0.0 2.1 2 0 0 2 2 2 0 Bacteriophage lambda tail assembly protein I Prefoldin PF02996.17 gi|242399318|ref|YP_002994742.1| - 0.15 12.0 17.7 0.13 12.2 6.9 2.4 1 1 1 2 2 2 0 Prefoldin subunit CLZ PF16526.5 gi|242399318|ref|YP_002994742.1| - 0.15 12.4 10.1 2.2 8.7 4.8 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF4988 PF16378.5 gi|242399318|ref|YP_002994742.1| - 0.17 11.6 6.1 0.16 11.7 1.2 2.0 2 0 0 2 2 2 0 Domain of unknown function Filament PF00038.21 gi|242399318|ref|YP_002994742.1| - 0.2 11.2 15.3 0.7 9.4 5.4 2.0 1 1 0 2 2 2 0 Intermediate filament protein COG2 PF06148.11 gi|242399318|ref|YP_002994742.1| - 0.21 11.7 7.9 3.2 7.8 2.4 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DLP_helical PF18709.1 gi|242399318|ref|YP_002994742.1| - 0.23 10.6 10.8 0.077 12.2 7.5 1.6 1 1 0 1 1 1 0 Dynamin-like helical domain EzrA PF06160.12 gi|242399318|ref|YP_002994742.1| - 0.23 9.6 14.3 0.35 9.0 14.3 1.3 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA DUF4164 PF13747.6 gi|242399318|ref|YP_002994742.1| - 0.46 10.8 9.4 2.5 8.4 0.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Uds1 PF15456.6 gi|242399318|ref|YP_002994742.1| - 0.47 10.6 9.6 0.81 9.9 9.6 1.4 1 1 0 1 1 1 0 Up-regulated During Septation Seryl_tRNA_N PF02403.22 gi|242399318|ref|YP_002994742.1| - 0.57 10.4 17.0 1.5e+02 2.7 17.0 2.1 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain PI3K_P85_iSH2 PF16454.5 gi|242399318|ref|YP_002994742.1| - 0.65 9.6 15.5 14 5.2 2.5 2.0 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF5320 PF17253.2 gi|242399318|ref|YP_002994742.1| - 0.74 10.9 5.7 6.8 7.8 1.3 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5320) Tropomyosin PF00261.20 gi|242399318|ref|YP_002994742.1| - 0.79 9.0 17.7 1.6 8.0 7.8 2.0 1 1 1 2 2 2 0 Tropomyosin E2F_CC-MB PF16421.5 gi|242399318|ref|YP_002994742.1| - 0.79 10.1 10.4 0.48 10.8 2.0 2.3 2 1 0 2 2 2 0 E2F transcription factor CC-MB domain FAA_hydro_N_2 PF18288.1 gi|242399318|ref|YP_002994742.1| - 0.79 10.2 4.4 2.8 8.4 0.3 2.3 1 1 1 2 2 2 0 Fumarylacetoacetase N-terminal domain 2 LMBR1 PF04791.16 gi|242399318|ref|YP_002994742.1| - 0.89 8.4 3.6 1.1 8.1 3.6 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein IFT57 PF10498.9 gi|242399318|ref|YP_002994742.1| - 0.9 8.4 12.8 1.4 7.8 12.8 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Sec34 PF04136.15 gi|242399318|ref|YP_002994742.1| - 0.93 9.4 12.1 2 8.3 2.0 2.1 1 1 1 2 2 2 0 Sec34-like family CinA_KH PF18146.1 gi|242399318|ref|YP_002994742.1| - 0.96 9.7 4.7 0.46 10.7 1.2 2.2 1 1 1 2 2 2 0 Damage-inducible protein CinA KH domain DUF4618 PF15397.6 gi|242399318|ref|YP_002994742.1| - 1 8.8 18.9 1.6 8.1 7.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Fib_alpha PF08702.10 gi|242399318|ref|YP_002994742.1| - 1.5 9.0 12.6 7.5 6.7 12.6 2.0 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family CENP-Q PF13094.6 gi|242399318|ref|YP_002994742.1| - 1.9 8.7 14.1 2.4 8.3 1.5 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit AAA_13 PF13166.6 gi|242399318|ref|YP_002994742.1| - 1.9 7.0 12.3 3.5 6.2 12.3 1.3 1 1 0 1 1 1 0 AAA domain HSCB_C PF07743.13 gi|242399318|ref|YP_002994742.1| - 1.9 9.0 11.7 0.086 13.3 3.0 2.3 2 1 0 2 2 2 0 HSCB C-terminal oligomerisation domain FlxA PF14282.6 gi|242399318|ref|YP_002994742.1| - 2 8.5 19.9 1.4 8.9 4.3 2.5 2 0 0 2 2 2 0 FlxA-like protein MCU PF04678.13 gi|242399318|ref|YP_002994742.1| - 2.1 8.4 10.8 0.56 10.3 3.3 2.0 1 1 1 2 2 2 0 Mitochondrial calcium uniporter zf-CpG_bind_C PF12269.8 gi|242399318|ref|YP_002994742.1| - 2.4 7.9 12.9 0.9 9.3 4.6 2.0 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain DUF948 PF06103.11 gi|242399318|ref|YP_002994742.1| - 2.4 8.4 9.7 1 9.7 2.6 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4795 PF16043.5 gi|242399318|ref|YP_002994742.1| - 3.1 7.4 15.5 29 4.2 15.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF16 PF01519.16 gi|242399318|ref|YP_002994742.1| - 3.3 8.2 20.1 0.19 12.3 6.7 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF16 Snapin_Pallidin PF14712.6 gi|242399318|ref|YP_002994742.1| - 3.5 8.1 19.1 2.1 8.9 5.6 2.2 1 1 1 2 2 2 0 Snapin/Pallidin GIT_CC PF16559.5 gi|242399318|ref|YP_002994742.1| - 4.3 7.3 14.3 0.12 12.2 4.9 2.2 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor SlyX PF04102.12 gi|242399318|ref|YP_002994742.1| - 4.8 7.9 15.2 0.75 10.5 4.3 2.3 2 0 0 2 2 2 0 SlyX Syntaxin-6_N PF09177.11 gi|242399318|ref|YP_002994742.1| - 5 7.7 9.6 17 6.1 8.1 2.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DivIC PF04977.15 gi|242399318|ref|YP_002994742.1| - 5.3 6.9 17.4 1.1 9.0 5.7 2.2 2 0 0 2 2 2 0 Septum formation initiator Fmp27_WPPW PF10359.9 gi|242399318|ref|YP_002994742.1| - 5.5 5.7 10.4 11 4.8 10.4 1.4 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain BLOC1_2 PF10046.9 gi|242399318|ref|YP_002994742.1| - 5.6 7.3 14.3 4.3e+02 1.3 14.4 2.2 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2408 PF10303.9 gi|242399318|ref|YP_002994742.1| - 6.5 7.3 12.2 1.9e+02 2.6 12.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Allexi_40kDa PF05549.11 gi|242399318|ref|YP_002994742.1| - 7.1 6.0 7.6 6.4 6.2 4.1 1.9 1 1 1 2 2 2 0 Allexivirus 40kDa protein HemX PF04375.14 gi|242399318|ref|YP_002994742.1| - 7.1 5.8 17.6 47 3.1 17.6 1.9 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase EMP24_GP25L PF01105.24 gi|242399318|ref|YP_002994742.1| - 7.3 6.5 8.7 24 4.8 8.7 1.8 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF2802 PF10975.8 gi|242399318|ref|YP_002994742.1| - 7.5 6.8 12.5 4.6 7.5 3.8 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) DUF2203 PF09969.9 gi|242399318|ref|YP_002994742.1| - 8.7 7.1 11.0 5.4e+02 1.3 11.0 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Spc24 PF08286.11 gi|242399318|ref|YP_002994742.1| - 8.8 6.6 15.2 6.2 7.1 5.8 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF5398 PF17376.2 gi|242399318|ref|YP_002994742.1| - 9 7.0 12.5 0.34 11.6 4.1 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5398) Pcc1 PF09341.10 gi|242399319|ref|YP_002994743.1| - 4.8e-15 55.5 0.0 5.2e-15 55.3 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.13 gi|242399321|ref|YP_002994745.1| - 9.5e-09 34.8 6.2 1.5e-08 34.2 6.2 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|242399321|ref|YP_002994745.1| - 2.8e-05 24.1 0.2 3e-05 24.0 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|242399321|ref|YP_002994745.1| - 3e-05 24.1 0.5 4.3e-05 23.5 0.5 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|242399321|ref|YP_002994745.1| - 0.00012 21.4 3.2 0.0072 15.7 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|242399321|ref|YP_002994745.1| - 0.00078 19.3 0.8 0.26 11.2 0.3 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG zf_UBZ PF18439.1 gi|242399321|ref|YP_002994745.1| - 0.0018 17.8 0.9 0.076 12.6 0.0 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DUF4379 PF14311.6 gi|242399321|ref|YP_002994745.1| - 0.0018 18.6 0.1 0.0026 18.1 0.1 1.2 1 0 0 1 1 1 1 Probable Zinc-ribbon domain DZR PF12773.7 gi|242399321|ref|YP_002994745.1| - 0.0019 18.2 0.4 0.0031 17.5 0.4 1.4 1 1 0 1 1 1 1 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|242399321|ref|YP_002994745.1| - 0.0022 17.8 1.5 0.0031 17.4 1.0 1.5 1 1 1 2 2 2 1 SprT-like zinc ribbon domain Ogr_Delta PF04606.12 gi|242399321|ref|YP_002994745.1| - 0.0024 17.8 0.4 0.7 9.9 0.2 2.1 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger TFIIS_C PF01096.18 gi|242399321|ref|YP_002994745.1| - 0.0029 17.4 2.4 0.1 12.4 0.3 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) CpXC PF14353.6 gi|242399321|ref|YP_002994745.1| - 0.0038 17.3 1.2 1.2 9.2 0.1 2.1 1 1 1 2 2 2 2 CpXC protein Prok-RING_1 PF14446.6 gi|242399321|ref|YP_002994745.1| - 0.004 17.1 0.6 0.0059 16.5 0.6 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|242399321|ref|YP_002994745.1| - 0.005 16.5 6.0 0.1 12.3 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|242399321|ref|YP_002994745.1| - 0.0051 17.2 2.1 0.57 10.7 0.4 2.2 2 0 0 2 2 2 1 Zinc-finger double domain zinc_ribbon_5 PF13719.6 gi|242399321|ref|YP_002994745.1| - 0.006 16.3 1.7 1.2 9.0 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain DUF951 PF06107.11 gi|242399321|ref|YP_002994745.1| - 0.0061 16.4 1.0 0.25 11.3 0.0 2.1 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF951) Zn_Tnp_IS1595 PF12760.7 gi|242399321|ref|YP_002994745.1| - 0.0085 16.0 1.3 2 8.5 0.2 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|242399321|ref|YP_002994745.1| - 0.009 15.9 2.9 0.35 10.8 2.9 2.2 1 1 0 1 1 1 1 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|242399321|ref|YP_002994745.1| - 0.0092 15.9 3.0 1.2 9.1 0.1 2.2 2 0 0 2 2 2 1 zinc-finger of a C2HC-type Zn_ribbon_recom PF13408.6 gi|242399321|ref|YP_002994745.1| - 0.011 16.2 2.3 0.25 11.9 0.2 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-C3HC4_3 PF13920.6 gi|242399321|ref|YP_002994745.1| - 0.012 15.4 0.6 0.014 15.3 0.6 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-AN1 PF01428.16 gi|242399321|ref|YP_002994745.1| - 0.013 15.7 0.6 1.9 8.7 0.1 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zf-C2H2_6 PF13912.6 gi|242399321|ref|YP_002994745.1| - 0.014 15.4 2.5 0.2 11.7 0.2 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|242399321|ref|YP_002994745.1| - 0.016 15.7 4.4 0.51 10.9 0.9 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF3268 PF11672.8 gi|242399321|ref|YP_002994745.1| - 0.018 15.4 0.5 0.31 11.4 0.0 2.0 2 0 0 2 2 2 0 zinc-finger-containing domain FYVE PF01363.21 gi|242399321|ref|YP_002994745.1| - 0.018 15.2 0.1 0.019 15.1 0.1 1.1 1 0 0 1 1 1 0 FYVE zinc finger zinc_ribbon_10 PF10058.9 gi|242399321|ref|YP_002994745.1| - 0.019 14.7 0.6 2.5 7.9 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF2072 PF09845.9 gi|242399321|ref|YP_002994745.1| - 0.019 15.2 0.3 0.022 15.0 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-C4_Topoisom PF01396.19 gi|242399321|ref|YP_002994745.1| - 0.026 14.3 2.6 0.19 11.6 0.2 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger OrfB_Zn_ribbon PF07282.11 gi|242399321|ref|YP_002994745.1| - 0.026 14.4 1.0 0.058 13.3 0.9 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_4 PF13894.6 gi|242399321|ref|YP_002994745.1| - 0.027 15.3 1.4 4.3 8.4 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2HC5 PF06221.13 gi|242399321|ref|YP_002994745.1| - 0.033 14.2 0.5 0.068 13.2 0.5 1.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zinc-ribbons_6 PF07191.12 gi|242399321|ref|YP_002994745.1| - 0.037 14.0 0.6 0.064 13.2 0.6 1.4 1 1 0 1 1 1 0 zinc-ribbons zf-BED PF02892.15 gi|242399321|ref|YP_002994745.1| - 0.045 13.8 0.8 3.8 7.6 0.1 2.1 2 0 0 2 2 2 0 BED zinc finger YacG PF03884.14 gi|242399321|ref|YP_002994745.1| - 0.055 13.2 0.5 1.1 9.0 0.1 2.1 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG YhfH PF14149.6 gi|242399321|ref|YP_002994745.1| - 0.055 13.5 2.4 2 8.5 0.4 2.1 2 0 0 2 2 2 0 YhfH-like protein DUF35_N PF12172.8 gi|242399321|ref|YP_002994745.1| - 0.066 13.1 0.6 9.2 6.3 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) NinF PF05810.12 gi|242399321|ref|YP_002994745.1| - 0.092 12.6 0.2 0.13 12.1 0.2 1.3 1 0 0 1 1 1 0 NinF protein TF_Zn_Ribbon PF08271.12 gi|242399321|ref|YP_002994745.1| - 0.1 12.1 2.4 0.55 9.8 2.4 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding PyrI_C PF02748.15 gi|242399321|ref|YP_002994745.1| - 0.12 12.3 4.2 2.7 8.0 0.2 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain FYDLN_acid PF09538.10 gi|242399321|ref|YP_002994745.1| - 0.16 12.7 0.7 0.2 12.3 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-Di19 PF05605.12 gi|242399321|ref|YP_002994745.1| - 0.18 12.1 1.3 1.1 9.6 0.2 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-tcix PF14952.6 gi|242399321|ref|YP_002994745.1| - 0.76 9.4 6.7 5.3 6.8 0.1 2.6 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Ribosomal_L37ae PF01780.19 gi|242399322|ref|YP_002994746.1| - 2.6e-35 120.3 3.8 3.1e-35 120.1 3.8 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|242399322|ref|YP_002994746.1| - 2.1e-06 27.6 3.4 3.1e-06 27.0 3.4 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|242399322|ref|YP_002994746.1| - 0.0001 22.1 0.8 0.00014 21.7 0.8 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|242399322|ref|YP_002994746.1| - 0.00051 20.1 2.1 0.053 13.7 0.5 2.2 2 0 0 2 2 2 1 Zinc ribbon domain Rep_fac-A_C PF08646.10 gi|242399322|ref|YP_002994746.1| - 0.00099 18.9 0.2 0.0012 18.6 0.2 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain zf-RRN7 PF11781.8 gi|242399322|ref|YP_002994746.1| - 0.0022 17.6 0.6 0.0031 17.1 0.6 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-H2C2_2 PF13465.6 gi|242399322|ref|YP_002994746.1| - 0.0027 18.1 0.2 1.4 9.5 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain C1_1 PF00130.22 gi|242399322|ref|YP_002994746.1| - 0.0075 16.1 1.5 0.01 15.7 1.5 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Lar_restr_allev PF14354.6 gi|242399322|ref|YP_002994746.1| - 0.0088 16.4 0.4 0.013 15.9 0.4 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.16 gi|242399322|ref|YP_002994746.1| - 0.014 15.4 2.8 0.028 14.4 2.8 1.5 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|242399322|ref|YP_002994746.1| - 0.021 14.3 0.4 0.039 13.5 0.4 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding ADK_lid PF05191.14 gi|242399322|ref|YP_002994746.1| - 0.026 14.5 0.4 3.9 7.5 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Elf1 PF05129.13 gi|242399322|ref|YP_002994746.1| - 0.031 14.3 2.2 0.061 13.4 2.2 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like RPA_interact_C PF14768.6 gi|242399322|ref|YP_002994746.1| - 0.035 14.7 0.1 0.048 14.2 0.1 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zf-C2H2 PF00096.26 gi|242399322|ref|YP_002994746.1| - 0.048 14.1 1.1 6.4 7.4 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Rad50_zn_hook PF04423.14 gi|242399322|ref|YP_002994746.1| - 0.062 13.1 0.2 0.09 12.6 0.2 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif A2L_zn_ribbon PF08792.10 gi|242399322|ref|YP_002994746.1| - 0.062 13.0 2.2 0.23 11.2 2.2 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-C2H2_3 PF13878.6 gi|242399322|ref|YP_002994746.1| - 0.074 12.9 0.6 14 5.6 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-C2H2_4 PF13894.6 gi|242399322|ref|YP_002994746.1| - 0.093 13.6 1.2 15 6.7 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF4379 PF14311.6 gi|242399322|ref|YP_002994746.1| - 0.11 12.9 1.9 3.4 8.1 0.1 2.2 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zf-BED PF02892.15 gi|242399322|ref|YP_002994746.1| - 0.15 12.1 2.1 2.7 8.1 0.1 2.2 1 1 1 2 2 2 0 BED zinc finger Zn_ribbon_SprT PF17283.2 gi|242399322|ref|YP_002994746.1| - 0.16 11.9 4.3 0.41 10.6 4.3 1.6 1 1 0 1 1 1 0 SprT-like zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|242399322|ref|YP_002994746.1| - 0.18 12.0 3.0 0.21 11.8 0.6 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HalOD2 PF18547.1 gi|242399322|ref|YP_002994746.1| - 0.18 11.7 4.9 0.37 10.7 4.9 1.6 1 1 0 1 1 1 0 Halobacterial output domain 2 zf-RING_13 PF17977.1 gi|242399322|ref|YP_002994746.1| - 0.2 11.8 2.9 0.25 11.5 2.9 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-C2H2_6 PF13912.6 gi|242399322|ref|YP_002994746.1| - 0.2 11.7 2.6 7 6.8 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DZR PF12773.7 gi|242399322|ref|YP_002994746.1| - 0.2 11.7 3.0 1.8 8.6 3.3 1.8 1 1 1 2 2 2 0 Double zinc ribbon zf-C2HC_2 PF13913.6 gi|242399322|ref|YP_002994746.1| - 0.2 11.6 5.7 1.7 8.6 1.0 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ogr_Delta PF04606.12 gi|242399322|ref|YP_002994746.1| - 0.26 11.3 4.1 10 6.2 4.1 2.2 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf_UBZ PF18439.1 gi|242399322|ref|YP_002994746.1| - 0.27 10.9 0.9 4.5 6.9 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Nudix_N_2 PF14803.6 gi|242399322|ref|YP_002994746.1| - 0.27 11.2 4.7 2.3 8.2 0.2 2.6 2 1 1 3 3 3 0 Nudix N-terminal Rubredoxin_2 PF18073.1 gi|242399322|ref|YP_002994746.1| - 0.33 10.7 4.4 0.64 9.8 0.6 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2_11 PF16622.5 gi|242399322|ref|YP_002994746.1| - 0.67 9.8 0.2 0.67 9.8 0.2 2.0 2 0 0 2 2 2 0 zinc-finger C2H2-type CpXC PF14353.6 gi|242399322|ref|YP_002994746.1| - 0.8 9.8 3.5 12 5.9 0.2 2.2 1 1 1 2 2 2 0 CpXC protein Prim_Zn_Ribbon PF08273.12 gi|242399322|ref|YP_002994746.1| - 0.81 10.0 7.4 2.9 8.2 7.4 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-tcix PF14952.6 gi|242399322|ref|YP_002994746.1| - 0.92 9.2 6.5 0.52 10.0 0.5 2.5 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_2 PF13240.6 gi|242399322|ref|YP_002994746.1| - 1.7 8.5 5.7 12 5.8 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF835 PF05763.12 gi|242399323|ref|YP_002994747.1| - 7.3e-14 51.7 0.1 8.2e-14 51.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Rubrerythrin PF02915.17 gi|242399324|ref|YP_002994748.1| - 1.9e-22 80.2 8.2 2.5e-22 79.8 8.2 1.2 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|242399324|ref|YP_002994748.1| - 0.0045 17.3 0.7 0.15 12.4 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) MutS_II PF05188.17 gi|242399324|ref|YP_002994748.1| - 0.056 13.7 0.3 0.11 12.8 0.3 1.4 1 0 0 1 1 1 0 MutS domain II DUF892 PF05974.12 gi|242399324|ref|YP_002994748.1| - 0.058 13.4 0.1 0.16 12.0 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF892) Ferritin_2 PF13668.6 gi|242399324|ref|YP_002994748.1| - 0.095 12.9 0.9 0.33 11.2 1.0 1.7 1 1 0 1 1 1 0 Ferritin-like domain Ferritin PF00210.24 gi|242399324|ref|YP_002994748.1| - 0.1 12.5 1.2 0.27 11.2 0.9 1.9 1 1 0 1 1 1 0 Ferritin-like domain RNase_PH PF01138.21 gi|242399325|ref|YP_002994749.1| - 3.3e-31 108.5 0.0 5.4e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|242399325|ref|YP_002994749.1| - 3.7e-15 55.7 0.0 8.2e-15 54.6 0.0 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|242399326|ref|YP_002994750.1| - 4e-36 124.4 0.0 6.1e-36 123.8 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|242399326|ref|YP_002994750.1| - 1.8e-17 63.1 0.4 3.5e-17 62.2 0.4 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|242399327|ref|YP_002994751.1| - 5.6e-09 36.2 2.2 5.9e-09 36.1 0.7 1.8 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|242399327|ref|YP_002994751.1| - 3.4e-07 30.0 0.3 6.5e-07 29.1 0.3 1.5 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|242399327|ref|YP_002994751.1| - 6.6e-07 29.0 0.0 1.4e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_2 PF07650.17 gi|242399327|ref|YP_002994751.1| - 5.1e-06 26.2 2.1 8.5e-06 25.5 1.3 1.8 2 0 0 2 2 2 1 KH domain SBDS PF01172.18 gi|242399328|ref|YP_002994752.1| - 1.5e-25 89.1 0.1 2.7e-25 88.2 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|242399328|ref|YP_002994752.1| - 1.9e-18 66.5 0.0 3.1e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.26 gi|242399329|ref|YP_002994753.1| - 3.6e-69 232.1 1.4 1.1e-68 230.5 0.0 1.9 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|242399329|ref|YP_002994753.1| - 4.8e-13 48.5 0.8 1.2e-12 47.2 0.2 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature CARD_2 PF16739.5 gi|242399329|ref|YP_002994753.1| - 0.091 12.8 0.2 0.18 11.8 0.2 1.5 1 0 0 1 1 1 0 Caspase recruitment domain RNase_P_Rpp14 PF01900.19 gi|242399330|ref|YP_002994754.1| - 2.6e-22 79.0 0.1 3e-22 78.8 0.1 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family DUF763 PF05559.11 gi|242399331|ref|YP_002994755.1| - 2.8e-124 414.4 0.0 5.1e-124 413.5 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF763) HNH PF01844.23 gi|242399333|ref|YP_002994757.1| - 8.6e-13 48.2 1.2 1.8e-12 47.2 1.2 1.5 1 0 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 gi|242399333|ref|YP_002994757.1| - 1.3e-07 31.3 1.2 2.3e-07 30.6 1.2 1.4 1 0 0 1 1 1 1 HNH endonuclease Cytochrome_C7 PF14522.6 gi|242399333|ref|YP_002994757.1| - 0.06 13.3 0.2 0.11 12.5 0.2 1.6 1 1 0 1 1 1 0 Cytochrome c7 and related cytochrome c zf-C2H2_4 PF13894.6 gi|242399333|ref|YP_002994757.1| - 0.072 14.0 0.2 0.072 14.0 0.2 1.9 2 0 0 2 2 2 0 C2H2-type zinc finger SPT2 PF08243.11 gi|242399333|ref|YP_002994757.1| - 0.095 13.2 0.3 0.095 13.2 0.3 1.8 2 1 0 2 2 2 0 SPT2 chromatin protein zf-C2H2 PF00096.26 gi|242399333|ref|YP_002994757.1| - 0.12 12.9 0.2 0.12 12.9 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF1677 PF07911.13 gi|242399333|ref|YP_002994757.1| - 0.13 12.7 1.5 0.37 11.2 1.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1677) DUF4674 PF15719.5 gi|242399333|ref|YP_002994757.1| - 1.3 9.0 11.7 3 7.9 8.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4674) DUF357 PF04010.13 gi|242399334|ref|YP_002994758.1| - 1.6e-29 101.8 1.8 1.9e-29 101.6 1.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF555 PF04475.12 gi|242399335|ref|YP_002994759.1| - 1.2e-41 141.1 0.7 1.5e-41 140.8 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) FdhE PF04216.12 gi|242399335|ref|YP_002994759.1| - 0.05 13.5 0.0 0.075 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Rad50_zn_hook PF04423.14 gi|242399335|ref|YP_002994759.1| - 0.055 13.3 0.1 0.14 12.0 0.1 1.7 1 0 0 1 1 1 0 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.16 gi|242399335|ref|YP_002994759.1| - 0.072 13.1 0.9 0.16 12.0 0.9 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain CTP_synth_N PF06418.14 gi|242399336|ref|YP_002994760.1| - 1.9e-126 420.8 1.0 2.5e-126 420.4 1.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|242399336|ref|YP_002994760.1| - 2.9e-58 196.8 0.0 6.2e-58 195.7 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|242399336|ref|YP_002994760.1| - 6.6e-07 29.3 0.1 4.6e-05 23.3 0.0 3.3 2 1 1 3 3 3 1 Peptidase C26 CbiA PF01656.23 gi|242399336|ref|YP_002994760.1| - 0.052 13.6 0.0 0.11 12.5 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|242399336|ref|YP_002994760.1| - 0.097 12.6 0.2 0.51 10.2 0.2 2.0 1 1 0 1 1 1 0 AAA domain DJ-1_PfpI PF01965.24 gi|242399336|ref|YP_002994760.1| - 0.15 11.9 0.1 0.74 9.6 0.0 2.0 2 0 0 2 2 2 0 DJ-1/PfpI family PALP PF00291.25 gi|242399338|ref|YP_002994762.1| - 3.2e-72 243.4 0.0 3.8e-72 243.2 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ABM PF03992.16 gi|242399338|ref|YP_002994762.1| - 0.00027 21.0 0.0 0.00054 20.0 0.0 1.4 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Arginase PF00491.21 gi|242399339|ref|YP_002994763.1| - 4.1e-38 131.5 0.0 5.3e-38 131.1 0.0 1.1 1 0 0 1 1 1 1 Arginase family Ribosomal_S8e PF01201.22 gi|242399340|ref|YP_002994764.1| - 1e-32 113.2 4.6 1.2e-32 112.9 4.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DZR PF12773.7 gi|242399341|ref|YP_002994765.1| - 2.6e-08 33.8 11.1 3.7e-08 33.3 11.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|242399341|ref|YP_002994765.1| - 6.2e-06 26.9 7.4 0.0071 17.1 0.5 2.7 2 0 0 2 2 2 2 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|242399341|ref|YP_002994765.1| - 5.6e-05 22.4 18.6 0.0028 17.0 6.1 2.9 1 1 2 3 3 3 3 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|242399341|ref|YP_002994765.1| - 0.00046 19.8 19.8 0.046 13.4 5.5 3.0 2 2 0 2 2 2 2 zinc-ribbon domain DUF2207 PF09972.9 gi|242399341|ref|YP_002994765.1| - 0.0043 15.9 8.3 0.012 14.4 7.9 1.7 1 1 1 2 2 2 1 Predicted membrane protein (DUF2207) T3SSipB PF16535.5 gi|242399341|ref|YP_002994765.1| - 0.014 15.8 1.1 0.028 14.9 1.1 1.4 1 0 0 1 1 1 0 Type III cell invasion protein SipB Occludin_ELL PF07303.13 gi|242399341|ref|YP_002994765.1| - 0.016 15.9 5.0 0.016 15.9 5.0 2.6 2 1 0 2 2 2 0 Occludin homology domain Syntaxin_2 PF14523.6 gi|242399341|ref|YP_002994765.1| - 0.081 13.3 0.4 0.18 12.2 0.1 1.8 2 0 0 2 2 2 0 Syntaxin-like protein DUF2330 PF10092.9 gi|242399341|ref|YP_002994765.1| - 0.12 11.5 2.0 0.19 10.8 2.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2330) Cys_rich_KTR PF14205.6 gi|242399341|ref|YP_002994765.1| - 0.13 12.1 2.7 0.22 11.3 2.7 1.4 1 0 0 1 1 1 0 Cysteine-rich KTR DUF2524 PF10732.9 gi|242399341|ref|YP_002994765.1| - 0.14 12.5 11.5 0.41 11.0 6.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2524) Terminase_4 PF05119.12 gi|242399341|ref|YP_002994765.1| - 0.14 12.6 3.2 0.71 10.3 2.0 2.2 1 1 1 2 2 2 0 Phage terminase, small subunit Lipase_3 PF01764.25 gi|242399341|ref|YP_002994765.1| - 0.18 11.6 0.1 4 7.3 0.0 2.2 2 0 0 2 2 2 0 Lipase (class 3) HypA PF01155.19 gi|242399341|ref|YP_002994765.1| - 0.79 9.8 8.9 0.63 10.1 0.5 2.7 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_23 PF13476.6 gi|242399341|ref|YP_002994765.1| - 3 8.3 6.3 4.3 7.8 6.3 1.2 1 0 0 1 1 1 0 AAA domain UPF0547 PF10571.9 gi|242399341|ref|YP_002994765.1| - 4.3 7.5 16.5 48 4.2 11.0 3.1 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 NOG1_N PF17835.1 gi|242399342|ref|YP_002994766.1| - 4.7e-52 176.2 1.3 8.3e-52 175.4 1.3 1.4 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|242399342|ref|YP_002994766.1| - 3.9e-25 87.4 0.0 8.8e-25 86.3 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|242399342|ref|YP_002994766.1| - 4.2e-21 75.1 0.0 1e-20 73.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|242399342|ref|YP_002994766.1| - 2.1e-18 66.3 0.0 3.2e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|242399342|ref|YP_002994766.1| - 2e-08 34.3 0.1 0.004 17.1 0.0 2.8 2 1 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|242399342|ref|YP_002994766.1| - 1.7e-05 24.8 0.0 0.00017 21.6 0.0 2.3 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain GTP_EFTU PF00009.27 gi|242399342|ref|YP_002994766.1| - 6.5e-05 22.5 0.2 0.17 11.4 0.0 3.3 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|242399342|ref|YP_002994766.1| - 6.7e-05 22.4 0.0 0.11 12.0 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family Ras PF00071.22 gi|242399342|ref|YP_002994766.1| - 7.3e-05 22.4 0.0 0.00058 19.5 0.0 2.1 1 1 0 1 1 1 1 Ras family PduV-EutP PF10662.9 gi|242399342|ref|YP_002994766.1| - 0.0001 22.0 0.3 0.0034 17.1 0.2 2.8 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|242399342|ref|YP_002994766.1| - 0.0017 18.0 0.0 0.93 9.1 0.0 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.20 gi|242399342|ref|YP_002994766.1| - 0.0053 16.0 0.2 0.094 11.9 0.1 2.3 1 1 0 2 2 2 1 G-protein alpha subunit ATP_bind_1 PF03029.17 gi|242399342|ref|YP_002994766.1| - 0.0063 16.3 0.0 0.45 10.3 0.0 2.6 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|242399342|ref|YP_002994766.1| - 0.012 15.9 0.0 0.12 12.6 0.0 2.3 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|242399342|ref|YP_002994766.1| - 0.014 16.0 0.0 0.07 13.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|242399342|ref|YP_002994766.1| - 0.018 15.1 0.1 5.6 7.0 0.0 2.8 2 1 1 3 3 3 0 Dynamin family AAA_22 PF13401.6 gi|242399342|ref|YP_002994766.1| - 0.023 15.0 0.0 0.075 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.16 gi|242399342|ref|YP_002994766.1| - 0.026 13.8 0.0 0.056 12.8 0.0 1.6 1 0 0 1 1 1 0 AIG1 family SRPRB PF09439.10 gi|242399342|ref|YP_002994766.1| - 0.042 13.3 0.0 0.076 12.4 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_28 PF13521.6 gi|242399342|ref|YP_002994766.1| - 0.053 13.8 0.0 0.17 12.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|242399342|ref|YP_002994766.1| - 0.061 13.7 0.0 0.14 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|242399342|ref|YP_002994766.1| - 0.067 13.1 0.3 1.8 8.4 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea TniB PF05621.11 gi|242399342|ref|YP_002994766.1| - 0.087 12.2 0.0 0.33 10.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein NTPase_1 PF03266.15 gi|242399342|ref|YP_002994766.1| - 0.12 12.2 1.0 0.39 10.6 0.1 2.4 3 0 0 3 3 2 0 NTPase KTI12 PF08433.10 gi|242399342|ref|YP_002994766.1| - 0.12 11.8 0.0 0.35 10.3 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|242399342|ref|YP_002994766.1| - 0.16 12.3 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase MeaB PF03308.16 gi|242399342|ref|YP_002994766.1| - 0.19 10.7 0.7 4.8 6.1 0.0 2.5 3 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PmbA_TldD PF01523.16 gi|242399343|ref|YP_002994767.1| - 3.7e-46 158.2 0.2 4.7e-46 157.9 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase YjbR PF04237.13 gi|242399343|ref|YP_002994767.1| - 0.045 14.3 0.0 0.13 12.8 0.0 1.8 1 0 0 1 1 1 0 YjbR PfkB PF00294.24 gi|242399344|ref|YP_002994768.1| - 1.5e-48 165.7 0.1 1.8e-48 165.4 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase ABC2_membrane PF01061.24 gi|242399345|ref|YP_002994769.1| - 5.9e-13 48.7 26.0 5.9e-13 48.7 26.0 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|242399345|ref|YP_002994769.1| - 5.6e-06 25.7 29.8 5.6e-06 25.7 29.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein Transport_MerF PF11431.8 gi|242399345|ref|YP_002994769.1| - 0.05 13.5 1.0 0.05 13.5 1.0 3.7 3 0 0 3 3 3 0 Membrane transport protein MerF ABC2_membrane PF01061.24 gi|242399346|ref|YP_002994770.1| - 1.3e-13 50.8 29.3 1.3e-13 50.8 29.3 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|242399346|ref|YP_002994770.1| - 1.1e-06 28.0 28.2 1.1e-06 28.0 28.2 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF4342 PF14242.6 gi|242399346|ref|YP_002994770.1| - 7.3 6.7 5.8 22 5.1 5.8 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4342) ABC_tran PF00005.27 gi|242399347|ref|YP_002994771.1| - 1.4e-30 106.6 0.0 2.5e-30 105.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242399347|ref|YP_002994771.1| - 1.4e-10 41.5 0.6 5.2e-06 26.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|242399347|ref|YP_002994771.1| - 2.1e-06 28.4 0.3 7.5e-06 26.6 0.3 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|242399347|ref|YP_002994771.1| - 6.7e-05 23.5 0.0 0.0001 22.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|242399347|ref|YP_002994771.1| - 0.00032 20.7 2.0 0.03 14.3 0.0 2.5 2 1 1 3 3 3 1 NTPase AAA_22 PF13401.6 gi|242399347|ref|YP_002994771.1| - 0.0025 18.1 0.3 0.017 15.4 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|242399347|ref|YP_002994771.1| - 0.0033 17.1 0.1 0.0072 16.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|242399347|ref|YP_002994771.1| - 0.0081 15.9 0.0 0.24 11.1 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|242399347|ref|YP_002994771.1| - 0.012 15.4 0.0 0.079 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|242399347|ref|YP_002994771.1| - 0.013 15.9 0.2 0.11 12.9 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|242399347|ref|YP_002994771.1| - 0.023 14.6 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|242399347|ref|YP_002994771.1| - 0.026 14.2 0.0 0.086 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|242399347|ref|YP_002994771.1| - 0.044 13.1 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.22 gi|242399347|ref|YP_002994771.1| - 0.048 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TFIIE_alpha PF02002.17 gi|242399350|ref|YP_002994774.1| - 2.2e-25 88.5 6.9 2.2e-25 88.5 6.9 1.8 2 0 0 2 2 2 1 TFIIE alpha subunit Rad50_zn_hook PF04423.14 gi|242399350|ref|YP_002994774.1| - 6.7e-05 22.6 0.5 6.7e-05 22.6 0.5 3.3 3 0 0 3 3 3 1 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.12 gi|242399350|ref|YP_002994774.1| - 0.00052 19.5 0.1 0.0011 18.5 0.1 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Prefoldin_2 PF01920.20 gi|242399350|ref|YP_002994774.1| - 0.001 19.0 9.7 0.023 14.6 0.1 3.3 3 0 0 3 3 3 1 Prefoldin subunit TrmB PF01978.19 gi|242399350|ref|YP_002994774.1| - 0.0042 16.9 0.1 0.011 15.6 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PLC-beta_C PF08703.10 gi|242399350|ref|YP_002994774.1| - 0.0054 16.7 4.5 0.0054 16.7 4.5 3.1 2 1 0 3 3 3 1 PLC-beta C terminal Sigma70_r3 PF04539.16 gi|242399350|ref|YP_002994774.1| - 0.009 16.1 0.2 0.009 16.1 0.2 2.5 3 0 0 3 3 3 1 Sigma-70 region 3 HTH_9 PF08221.11 gi|242399350|ref|YP_002994774.1| - 0.0091 16.1 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|242399350|ref|YP_002994774.1| - 0.012 15.7 0.6 1.7 8.8 0.1 2.3 2 0 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA ABC_tran_CTD PF16326.5 gi|242399350|ref|YP_002994774.1| - 0.017 15.3 11.9 3.6 7.9 0.1 3.4 3 0 0 3 3 3 0 ABC transporter C-terminal domain HTH_Crp_2 PF13545.6 gi|242399350|ref|YP_002994774.1| - 0.018 15.0 0.0 0.042 13.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain UPF0167 PF03691.14 gi|242399350|ref|YP_002994774.1| - 0.019 14.7 2.0 0.076 12.8 0.7 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0167) HTH_24 PF13412.6 gi|242399350|ref|YP_002994774.1| - 0.033 13.8 0.9 0.46 10.1 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|242399350|ref|YP_002994774.1| - 0.048 13.3 0.3 2.3 8.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 COQ7 PF03232.13 gi|242399350|ref|YP_002994774.1| - 0.082 12.7 1.9 0.39 10.5 0.1 2.2 1 1 1 2 2 2 0 Ubiquinone biosynthesis protein COQ7 HTH_AsnC-type PF13404.6 gi|242399350|ref|YP_002994774.1| - 0.11 12.3 0.2 1.7 8.6 0.0 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Ribosomal_S13 PF00416.22 gi|242399350|ref|YP_002994774.1| - 0.13 12.7 3.2 0.052 13.9 0.9 1.5 2 0 0 2 2 1 0 Ribosomal protein S13/S18 Ogr_Delta PF04606.12 gi|242399350|ref|YP_002994774.1| - 0.13 12.3 0.1 17 5.5 0.0 2.8 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Mrr_N PF14338.6 gi|242399350|ref|YP_002994774.1| - 0.16 12.1 2.5 0.17 12.0 0.1 2.2 3 0 0 3 3 3 0 Mrr N-terminal domain HTH_3 PF01381.22 gi|242399350|ref|YP_002994774.1| - 0.16 12.0 2.2 1.8 8.7 0.0 3.0 3 1 0 3 3 3 0 Helix-turn-helix DUF4140 PF13600.6 gi|242399350|ref|YP_002994774.1| - 0.26 11.8 2.8 40 4.7 0.3 3.0 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF4094 PF13334.6 gi|242399350|ref|YP_002994774.1| - 0.42 11.1 3.7 21 5.6 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4094) rRNA_proc-arch PF13234.6 gi|242399350|ref|YP_002994774.1| - 0.68 9.8 5.5 15 5.5 2.3 2.3 2 1 0 2 2 2 0 rRNA-processing arch domain HTH_40 PF14493.6 gi|242399350|ref|YP_002994774.1| - 0.95 10.0 5.3 1.1 9.7 0.3 2.7 2 1 1 3 3 3 0 Helix-turn-helix domain MerR-DNA-bind PF09278.11 gi|242399350|ref|YP_002994774.1| - 1 9.9 5.7 1.7 9.3 0.0 3.2 3 1 0 3 3 3 0 MerR, DNA binding MetOD2 PF18548.1 gi|242399350|ref|YP_002994774.1| - 3.2 7.9 7.7 1.3 9.2 0.2 3.1 3 0 0 3 3 3 0 Metanogen output domain 2 IFP_35_N PF07334.13 gi|242399350|ref|YP_002994774.1| - 4.2 7.5 7.0 2.6 8.2 0.4 2.7 3 0 0 3 3 3 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus 4HB_MCP_1 PF12729.7 gi|242399350|ref|YP_002994774.1| - 4.4 6.8 12.1 0.06 12.9 2.0 2.5 3 0 0 3 3 3 0 Four helix bundle sensory module for signal transduction DUF2110 PF09883.9 gi|242399351|ref|YP_002994775.1| - 9.1e-70 234.7 0.2 1e-69 234.6 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) ZapA PF05164.13 gi|242399352|ref|YP_002994776.1| - 0.19 12.2 0.0 0.31 11.5 0.0 1.3 1 0 0 1 1 1 0 Cell division protein ZapA ParA PF10609.9 gi|242399353|ref|YP_002994777.1| - 1.2e-95 319.6 0.9 1.5e-95 319.3 0.9 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|242399353|ref|YP_002994777.1| - 4.3e-16 59.1 0.0 7.9e-16 58.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|242399353|ref|YP_002994777.1| - 3.8e-13 49.7 0.5 1.9e-12 47.4 0.5 1.9 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|242399353|ref|YP_002994777.1| - 4.5e-08 32.7 0.1 7.6e-07 28.7 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 gi|242399353|ref|YP_002994777.1| - 1.2e-06 28.2 0.8 7e-06 25.7 0.8 2.0 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|242399353|ref|YP_002994777.1| - 3.1e-06 26.6 3.2 3.8e-05 23.0 0.4 2.3 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|242399353|ref|YP_002994777.1| - 2.5e-05 24.0 0.0 4.2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|242399353|ref|YP_002994777.1| - 0.00011 22.1 0.0 0.00021 21.2 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase CLP1_P PF16575.5 gi|242399353|ref|YP_002994777.1| - 0.00078 19.3 0.0 0.002 17.9 0.0 1.7 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|242399353|ref|YP_002994777.1| - 0.0057 15.7 0.0 0.012 14.6 0.0 1.6 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|242399353|ref|YP_002994777.1| - 0.0061 17.0 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain CBP_BcsQ PF06564.12 gi|242399353|ref|YP_002994777.1| - 0.0062 16.1 0.3 0.023 14.2 0.3 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ RsgA_GTPase PF03193.16 gi|242399353|ref|YP_002994777.1| - 0.0066 16.4 0.3 0.013 15.4 0.0 1.6 2 0 0 2 2 1 1 RsgA GTPase VirC1 PF07015.11 gi|242399353|ref|YP_002994777.1| - 0.0098 15.2 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein RecA PF00154.21 gi|242399353|ref|YP_002994777.1| - 0.011 15.2 0.1 0.03 13.8 0.0 1.7 2 0 0 2 2 2 0 recA bacterial DNA recombination protein DnaB_C PF03796.15 gi|242399353|ref|YP_002994777.1| - 0.012 14.9 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_26 PF13500.6 gi|242399353|ref|YP_002994777.1| - 0.033 14.0 0.2 8.6 6.1 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|242399353|ref|YP_002994777.1| - 0.036 14.6 0.1 0.082 13.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|242399353|ref|YP_002994777.1| - 0.046 13.0 0.1 0.086 12.1 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.15 gi|242399353|ref|YP_002994777.1| - 0.047 13.6 0.7 0.14 12.1 0.1 2.0 2 0 0 2 2 2 0 NTPase DAP3 PF10236.9 gi|242399353|ref|YP_002994777.1| - 0.053 12.7 0.1 0.085 12.0 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 SRP54 PF00448.22 gi|242399353|ref|YP_002994777.1| - 0.066 12.8 0.8 0.13 11.9 0.2 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MobB PF03205.14 gi|242399353|ref|YP_002994777.1| - 0.066 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 gi|242399353|ref|YP_002994777.1| - 0.082 12.6 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|242399353|ref|YP_002994777.1| - 0.084 12.3 0.2 0.22 11.0 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein AAA_5 PF07728.14 gi|242399353|ref|YP_002994777.1| - 0.085 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) zinc_ribbon_2 PF13240.6 gi|242399353|ref|YP_002994777.1| - 0.094 12.5 0.3 0.18 11.5 0.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain KTI12 PF08433.10 gi|242399353|ref|YP_002994777.1| - 0.1 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|242399353|ref|YP_002994777.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase TIP49 PF06068.13 gi|242399353|ref|YP_002994777.1| - 0.12 11.6 0.1 0.19 10.9 0.1 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|242399353|ref|YP_002994777.1| - 0.14 11.8 0.1 0.36 10.5 0.1 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|242399353|ref|YP_002994777.1| - 0.16 11.2 0.1 0.28 10.3 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|242399353|ref|YP_002994777.1| - 0.18 12.0 0.0 0.69 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain TPP_enzyme_C PF02775.21 gi|242399354|ref|YP_002994778.1| - 1.3e-26 93.3 0.2 2.4e-26 92.3 0.2 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|242399354|ref|YP_002994778.1| - 0.032 13.5 0.1 0.054 12.7 0.1 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Rep_1B PF17873.1 gi|242399354|ref|YP_002994778.1| - 0.21 11.5 1.2 0.33 10.8 0.0 1.9 2 0 0 2 2 2 0 Replicase polyprotein 1ab POR_N PF01855.19 gi|242399355|ref|YP_002994779.1| - 1e-77 261.0 0.7 1.4e-77 260.6 0.7 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|242399355|ref|YP_002994779.1| - 7e-25 87.3 0.0 1.3e-24 86.4 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|242399355|ref|YP_002994779.1| - 4.1e-05 23.4 0.2 0.0001 22.2 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|242399356|ref|YP_002994780.1| - 3.6e-13 48.7 15.2 1.9e-08 33.8 4.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|242399356|ref|YP_002994780.1| - 1.9e-12 46.7 13.7 1.5e-06 28.0 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|242399356|ref|YP_002994780.1| - 4.9e-11 42.6 6.5 6.7e-11 42.1 6.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242399356|ref|YP_002994780.1| - 1.6e-10 40.4 10.8 5.2e-05 23.1 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|242399356|ref|YP_002994780.1| - 2.8e-08 34.2 9.1 7.3e-08 32.9 9.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|242399356|ref|YP_002994780.1| - 1e-07 32.0 17.4 3.5e-06 27.1 9.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|242399356|ref|YP_002994780.1| - 3.9e-07 30.9 10.6 0.00054 20.9 3.3 2.4 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|242399356|ref|YP_002994780.1| - 4.3e-07 29.9 22.3 4.7e-05 23.4 12.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|242399356|ref|YP_002994780.1| - 1.1e-05 26.1 10.0 0.0098 16.6 0.7 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|242399356|ref|YP_002994780.1| - 0.0017 18.7 13.0 0.2 12.1 3.5 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|242399356|ref|YP_002994780.1| - 0.0028 18.2 11.1 0.27 11.8 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|242399356|ref|YP_002994780.1| - 0.0057 17.2 13.5 0.024 15.2 2.1 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|242399356|ref|YP_002994780.1| - 0.0088 16.5 12.3 0.32 11.6 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|242399356|ref|YP_002994780.1| - 0.06 14.2 10.5 0.27 12.1 1.6 2.4 2 1 2 4 4 3 0 4Fe-4S dicluster domain TPP_enzyme_C PF02775.21 gi|242399357|ref|YP_002994781.1| - 2.2e-18 66.5 0.0 3.2e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|242399358|ref|YP_002994782.1| - 2.1e-77 260.0 0.8 2.7e-77 259.6 0.8 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|242399358|ref|YP_002994782.1| - 1.8e-32 111.7 0.0 4.2e-32 110.5 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|242399358|ref|YP_002994782.1| - 0.00016 21.5 0.0 0.00061 19.7 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain Phosphonate-bd PF12974.7 gi|242399358|ref|YP_002994782.1| - 0.0099 15.5 0.2 0.039 13.5 0.0 1.9 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TPP_enzyme_N PF02776.18 gi|242399358|ref|YP_002994782.1| - 0.03 14.0 1.5 0.062 12.9 1.5 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Syntaxin_2 PF14523.6 gi|242399358|ref|YP_002994782.1| - 0.078 13.4 0.0 0.22 11.9 0.0 1.7 2 0 0 2 2 2 0 Syntaxin-like protein Fer4 PF00037.27 gi|242399359|ref|YP_002994783.1| - 5.6e-15 54.4 17.1 3.8e-08 32.8 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|242399359|ref|YP_002994783.1| - 2.7e-11 43.4 8.9 3.5e-11 43.1 8.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|242399359|ref|YP_002994783.1| - 1.3e-10 40.9 15.2 7.4e-06 25.8 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|242399359|ref|YP_002994783.1| - 2.4e-08 34.0 20.0 1e-06 28.8 10.8 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|242399359|ref|YP_002994783.1| - 5.3e-08 33.3 10.8 9.9e-08 32.5 10.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242399359|ref|YP_002994783.1| - 9.5e-08 31.7 11.7 0.00025 21.0 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|242399359|ref|YP_002994783.1| - 1.1e-07 31.8 22.9 7.5e-06 26.0 12.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|242399359|ref|YP_002994783.1| - 3.9e-07 30.9 10.7 0.00044 21.1 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|242399359|ref|YP_002994783.1| - 1.8e-05 25.4 9.2 0.032 15.0 3.1 2.7 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|242399359|ref|YP_002994783.1| - 4.5e-05 23.9 13.2 0.001 19.6 2.5 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|242399359|ref|YP_002994783.1| - 0.011 16.3 11.5 0.35 11.4 2.6 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|242399359|ref|YP_002994783.1| - 0.027 14.9 13.1 0.32 11.6 4.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|242399359|ref|YP_002994783.1| - 0.051 14.0 13.1 0.27 11.7 3.8 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|242399359|ref|YP_002994783.1| - 0.21 12.5 10.3 0.71 10.7 2.4 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|242399359|ref|YP_002994783.1| - 1.6 9.0 8.5 14 5.9 8.5 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR PF01558.18 gi|242399360|ref|YP_002994784.1| - 2.4e-44 151.5 0.6 2.8e-44 151.3 0.6 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase MAF_flag10 PF01973.18 gi|242399360|ref|YP_002994784.1| - 0.041 13.6 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF115 PHO4 PF01384.20 gi|242399362|ref|YP_002994786.1| - 4.2e-70 236.5 33.2 2.9e-69 233.7 33.2 1.9 1 1 0 1 1 1 1 Phosphate transporter family ABC2_membrane_3 PF12698.7 gi|242399363|ref|YP_002994787.1| - 1.6e-40 139.3 24.5 1.8e-40 139.1 24.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|242399363|ref|YP_002994787.1| - 1.1e-29 103.6 19.6 1.6e-29 103.1 19.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|242399363|ref|YP_002994787.1| - 1.5e-13 50.6 20.8 1.5e-13 50.6 20.8 2.6 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|242399363|ref|YP_002994787.1| - 3.1e-06 27.3 14.7 3.1e-06 27.3 14.7 3.3 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|242399363|ref|YP_002994787.1| - 5.7e-06 26.0 26.2 5.7e-06 26.0 26.2 2.5 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|242399364|ref|YP_002994788.1| - 8.9e-27 94.3 0.0 1.2e-26 93.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242399364|ref|YP_002994788.1| - 4.3e-12 46.5 0.2 7.5e-05 22.7 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|242399364|ref|YP_002994788.1| - 2.7e-05 24.7 0.1 3.6e-05 24.3 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|242399364|ref|YP_002994788.1| - 4.9e-05 23.0 0.1 0.0001 21.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|242399364|ref|YP_002994788.1| - 0.0013 18.2 0.2 1.7 8.1 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|242399364|ref|YP_002994788.1| - 0.0022 17.8 0.0 0.0034 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|242399364|ref|YP_002994788.1| - 0.0079 16.1 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_27 PF13514.6 gi|242399364|ref|YP_002994788.1| - 0.019 14.6 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|242399364|ref|YP_002994788.1| - 0.02 14.5 0.1 0.23 11.1 0.1 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|242399364|ref|YP_002994788.1| - 0.024 14.3 0.3 0.037 13.7 0.3 1.5 1 1 0 1 1 1 0 AAA domain AAA_8 PF12780.7 gi|242399364|ref|YP_002994788.1| - 0.032 13.6 0.4 0.16 11.2 0.1 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 AAA_22 PF13401.6 gi|242399364|ref|YP_002994788.1| - 0.034 14.4 0.1 0.07 13.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|242399364|ref|YP_002994788.1| - 0.051 14.1 0.1 0.14 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|242399364|ref|YP_002994788.1| - 0.078 12.0 0.1 0.15 11.0 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MutS_V PF00488.21 gi|242399364|ref|YP_002994788.1| - 0.12 12.4 0.3 18 5.3 0.1 2.2 2 0 0 2 2 2 0 MutS domain V RsgA_GTPase PF03193.16 gi|242399364|ref|YP_002994788.1| - 0.14 12.1 0.5 0.35 10.8 0.1 1.9 2 1 1 3 3 3 0 RsgA GTPase HTH_3 PF01381.22 gi|242399365|ref|YP_002994789.1| - 5.7e-20 71.1 0.2 6.3e-20 71.0 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|242399365|ref|YP_002994789.1| - 1.6e-15 56.9 0.3 1.8e-15 56.7 0.3 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|242399365|ref|YP_002994789.1| - 3.5e-10 40.1 0.0 3.8e-10 40.0 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|242399365|ref|YP_002994789.1| - 3.7e-08 33.7 0.0 4.2e-08 33.5 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|242399365|ref|YP_002994789.1| - 2.2e-07 30.6 0.3 2.8e-07 30.3 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|242399365|ref|YP_002994789.1| - 0.00024 20.5 0.2 0.00038 19.9 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|242399365|ref|YP_002994789.1| - 0.00033 20.5 0.3 0.0005 20.0 0.3 1.3 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|242399365|ref|YP_002994789.1| - 0.00079 19.4 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|242399365|ref|YP_002994789.1| - 0.001 18.8 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|242399365|ref|YP_002994789.1| - 0.0051 16.7 0.1 0.0073 16.2 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|242399365|ref|YP_002994789.1| - 0.0059 16.5 0.0 0.027 14.4 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_37 PF13744.6 gi|242399365|ref|YP_002994789.1| - 0.0063 16.4 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TnsD PF15978.5 gi|242399365|ref|YP_002994789.1| - 0.0082 15.2 0.0 0.0082 15.2 0.0 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_38 PF13936.6 gi|242399365|ref|YP_002994789.1| - 0.012 15.4 0.1 0.025 14.3 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|242399365|ref|YP_002994789.1| - 0.014 14.9 0.1 0.02 14.4 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|242399365|ref|YP_002994789.1| - 0.015 15.0 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma54_DBD PF04552.13 gi|242399365|ref|YP_002994789.1| - 0.018 14.8 0.0 0.021 14.5 0.0 1.0 1 0 0 1 1 1 0 Sigma-54, DNA binding domain YdaS_antitoxin PF15943.5 gi|242399365|ref|YP_002994789.1| - 0.019 14.8 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_7 PF02796.15 gi|242399365|ref|YP_002994789.1| - 0.033 14.2 0.6 0.069 13.2 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Sigma70_ECF PF07638.11 gi|242399365|ref|YP_002994789.1| - 0.072 13.0 0.0 0.086 12.7 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor WYL_3 PF18488.1 gi|242399365|ref|YP_002994789.1| - 0.11 12.9 0.0 0.34 11.3 0.0 1.7 1 1 1 2 2 2 0 WYL domain DUF2178 PF09946.9 gi|242399366|ref|YP_002994790.1| - 7.5e-13 48.6 1.5 1.2e-12 47.9 1.6 1.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) SPC12 PF06645.13 gi|242399366|ref|YP_002994790.1| - 0.57 10.3 0.1 0.57 10.3 0.1 2.2 2 1 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) LPAM_1 PF08139.12 gi|242399366|ref|YP_002994790.1| - 0.83 10.3 0.2 0.83 10.3 0.2 4.3 4 0 0 4 4 4 0 Prokaryotic membrane lipoprotein lipid attachment site PRC PF05239.16 gi|242399368|ref|YP_002994792.1| - 2e-14 53.4 0.6 2.5e-14 53.1 0.6 1.1 1 0 0 1 1 1 1 PRC-barrel domain EB1 PF03271.17 gi|242399368|ref|YP_002994792.1| - 0.13 12.5 0.2 1.2 9.4 0.0 2.3 2 1 0 2 2 2 0 EB1-like C-terminal motif AAA PF00004.29 gi|242399369|ref|YP_002994793.1| - 9.4e-103 339.9 0.0 6.1e-52 175.5 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|242399369|ref|YP_002994793.1| - 6.8e-32 109.0 1.1 1.3e-16 60.1 0.4 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|242399369|ref|YP_002994793.1| - 2.4e-31 107.7 0.1 3.6e-30 104.0 0.6 2.7 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|242399369|ref|YP_002994793.1| - 5.7e-17 61.9 0.0 2e-08 34.2 0.0 3.4 4 0 0 4 4 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|242399369|ref|YP_002994793.1| - 4.8e-16 59.4 0.0 6.9e-09 36.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|242399369|ref|YP_002994793.1| - 6.5e-16 59.2 0.0 1.5e-06 28.7 0.0 4.0 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|242399369|ref|YP_002994793.1| - 9.3e-14 51.0 0.3 6.5e-13 48.3 0.1 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|242399369|ref|YP_002994793.1| - 1.4e-13 51.3 0.2 0.00018 21.8 0.0 4.8 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|242399369|ref|YP_002994793.1| - 2.2e-11 43.5 0.1 0.00043 19.6 0.0 3.5 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|242399369|ref|YP_002994793.1| - 3.8e-11 43.1 0.0 1.4e-05 25.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|242399369|ref|YP_002994793.1| - 6e-11 42.5 1.6 0.00018 21.5 0.1 4.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|242399369|ref|YP_002994793.1| - 3.3e-10 40.3 0.0 0.00046 20.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|242399369|ref|YP_002994793.1| - 1.1e-08 35.7 0.1 0.016 15.7 0.0 3.6 3 0 0 3 3 2 2 AAA domain AAA_24 PF13479.6 gi|242399369|ref|YP_002994793.1| - 5.1e-08 32.9 0.0 0.0052 16.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|242399369|ref|YP_002994793.1| - 5.1e-08 32.9 0.1 0.0084 15.9 0.0 2.7 3 0 0 3 3 2 2 IstB-like ATP binding protein Vps4_C PF09336.10 gi|242399369|ref|YP_002994793.1| - 1.4e-07 31.4 1.4 0.0024 17.8 0.1 3.3 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain RNA_helicase PF00910.22 gi|242399369|ref|YP_002994793.1| - 1.6e-07 31.6 0.0 0.017 15.5 0.0 2.8 2 1 0 2 2 2 2 RNA helicase AAA_25 PF13481.6 gi|242399369|ref|YP_002994793.1| - 1.8e-07 31.0 2.1 0.0097 15.5 0.2 4.0 3 1 0 3 3 3 2 AAA domain Sigma54_activat PF00158.26 gi|242399369|ref|YP_002994793.1| - 4.1e-07 29.9 0.3 0.038 13.7 0.0 4.0 4 1 0 4 4 4 2 Sigma-54 interaction domain AAA_28 PF13521.6 gi|242399369|ref|YP_002994793.1| - 5.3e-07 30.0 0.0 0.02 15.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|242399369|ref|YP_002994793.1| - 5.9e-07 29.6 2.4 0.0079 16.1 0.0 4.0 4 1 1 5 5 3 2 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|242399369|ref|YP_002994793.1| - 1.1e-06 28.0 0.0 0.024 13.8 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|242399369|ref|YP_002994793.1| - 1.1e-06 28.2 1.9 0.038 13.4 0.0 2.9 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI Bac_DnaA PF00308.18 gi|242399369|ref|YP_002994793.1| - 1.8e-06 28.0 0.0 0.025 14.4 0.0 3.2 2 1 1 3 3 3 2 Bacterial dnaA protein AAA_7 PF12775.7 gi|242399369|ref|YP_002994793.1| - 6.7e-06 25.7 0.0 0.1 12.1 0.0 2.7 3 1 0 3 3 2 2 P-loop containing dynein motor region TsaE PF02367.17 gi|242399369|ref|YP_002994793.1| - 9.7e-06 25.6 0.0 0.13 12.2 0.0 2.8 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|242399369|ref|YP_002994793.1| - 1.8e-05 25.2 0.0 0.47 11.0 0.0 3.0 3 0 0 3 3 2 2 ABC transporter Zeta_toxin PF06414.12 gi|242399369|ref|YP_002994793.1| - 2.9e-05 23.5 1.2 0.33 10.2 0.0 3.5 4 0 0 4 4 4 2 Zeta toxin NACHT PF05729.12 gi|242399369|ref|YP_002994793.1| - 5.5e-05 23.1 0.1 1.1 9.2 0.0 3.7 4 0 0 4 4 4 2 NACHT domain Parvo_NS1 PF01057.17 gi|242399369|ref|YP_002994793.1| - 7.2e-05 22.0 0.1 0.36 9.9 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.9 gi|242399369|ref|YP_002994793.1| - 7.9e-05 22.0 0.0 0.11 11.7 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|242399369|ref|YP_002994793.1| - 9.9e-05 21.9 0.4 0.38 10.2 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein AAA_3 PF07726.11 gi|242399369|ref|YP_002994793.1| - 0.00015 21.6 0.0 0.57 10.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|242399369|ref|YP_002994793.1| - 0.00022 21.1 0.5 0.87 9.3 0.0 3.1 3 0 0 3 3 3 2 AAA domain NB-ARC PF00931.22 gi|242399369|ref|YP_002994793.1| - 0.00023 20.4 0.0 0.9 8.7 0.0 2.8 2 0 0 2 2 2 2 NB-ARC domain ATPase PF06745.13 gi|242399369|ref|YP_002994793.1| - 0.00027 20.4 7.8 0.49 9.7 0.0 4.8 5 1 1 6 6 6 2 KaiC AAA_30 PF13604.6 gi|242399369|ref|YP_002994793.1| - 0.00038 20.2 0.2 1.3 8.7 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|242399369|ref|YP_002994793.1| - 0.0014 19.0 1.9 2.8 8.4 0.0 4.1 3 1 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|242399369|ref|YP_002994793.1| - 0.0023 18.3 2.4 2.5 8.4 0.1 3.1 2 2 1 3 3 2 1 AAA domain Cytidylate_kin PF02224.18 gi|242399369|ref|YP_002994793.1| - 0.0024 17.7 1.5 6.2 6.5 0.0 4.0 4 0 0 4 4 4 0 Cytidylate kinase NTPase_1 PF03266.15 gi|242399369|ref|YP_002994793.1| - 0.0043 17.0 6.1 3.9 7.4 0.0 5.0 4 2 1 6 6 5 0 NTPase T2SSE PF00437.20 gi|242399369|ref|YP_002994793.1| - 0.0051 15.9 0.0 2 7.4 0.0 2.7 2 1 0 2 2 2 1 Type II/IV secretion system protein Sigma54_activ_2 PF14532.6 gi|242399369|ref|YP_002994793.1| - 0.0064 16.6 0.0 5.4 7.1 0.0 2.7 2 0 0 2 2 2 0 Sigma-54 interaction domain AFG1_ATPase PF03969.16 gi|242399369|ref|YP_002994793.1| - 0.012 14.5 0.0 5.4 5.8 0.0 2.7 2 0 0 2 2 2 0 AFG1-like ATPase Viral_helicase1 PF01443.18 gi|242399369|ref|YP_002994793.1| - 0.015 15.1 0.0 0.8 9.4 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase SKI PF01202.22 gi|242399369|ref|YP_002994793.1| - 0.016 15.3 1.1 12 6.0 0.0 3.8 4 0 0 4 4 3 0 Shikimate kinase Zot PF05707.12 gi|242399369|ref|YP_002994793.1| - 0.023 14.3 0.0 2.2 7.9 0.0 3.0 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) KAP_NTPase PF07693.14 gi|242399369|ref|YP_002994793.1| - 0.027 13.7 0.5 24 4.0 0.0 3.8 2 2 1 4 4 4 0 KAP family P-loop domain TniB PF05621.11 gi|242399369|ref|YP_002994793.1| - 0.04 13.3 0.0 17 4.8 0.0 3.3 3 0 0 3 3 3 0 Bacterial TniB protein ResIII PF04851.15 gi|242399369|ref|YP_002994793.1| - 0.041 13.9 0.0 20 5.1 0.0 3.0 3 0 0 3 3 2 0 Type III restriction enzyme, res subunit PduV-EutP PF10662.9 gi|242399369|ref|YP_002994793.1| - 0.11 12.2 0.0 22 4.8 0.0 2.7 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation IPT PF01745.16 gi|242399369|ref|YP_002994793.1| - 0.13 11.7 0.6 15 4.9 0.0 2.9 3 0 0 3 3 2 0 Isopentenyl transferase AAA_29 PF13555.6 gi|242399369|ref|YP_002994793.1| - 0.13 12.0 0.0 27 4.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain ATP-cone PF03477.16 gi|242399369|ref|YP_002994793.1| - 0.15 12.6 4.0 0.12 13.0 0.7 2.8 3 0 0 3 3 1 0 ATP cone domain cobW PF02492.19 gi|242399369|ref|YP_002994793.1| - 0.16 11.5 0.1 19 4.8 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FPRL1_inhibitor PF16104.5 gi|242399369|ref|YP_002994793.1| - 1.6 8.9 3.7 1.3 9.2 0.1 2.7 3 0 0 3 3 2 0 Formyl peptide receptor-like 1 inhibitory protein DUF1235 PF06822.12 gi|242399370|ref|YP_002994794.1| - 0.038 13.3 0.0 0.058 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1235) RuvX PF03652.15 gi|242399370|ref|YP_002994794.1| - 0.091 13.2 0.0 0.22 11.9 0.0 1.7 1 1 0 1 1 1 0 Holliday junction resolvase MG4 PF17789.1 gi|242399370|ref|YP_002994794.1| - 0.17 12.1 0.0 0.61 10.3 0.0 1.8 2 0 0 2 2 2 0 Macroglobulin domain MG4 Pox_Ag35 PF03286.14 gi|242399371|ref|YP_002994795.1| - 2.2 8.0 9.1 2.4 7.9 9.1 1.0 1 0 0 1 1 1 0 Pox virus Ag35 surface protein MoeA_N PF03453.17 gi|242399372|ref|YP_002994796.1| - 2.4e-41 141.1 0.1 7.6e-41 139.5 0.0 1.8 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|242399372|ref|YP_002994796.1| - 4.4e-25 88.0 0.0 7.6e-25 87.3 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|242399372|ref|YP_002994796.1| - 2.6e-18 66.0 0.0 7.6e-18 64.5 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MutL PF13941.6 gi|242399372|ref|YP_002994796.1| - 0.18 10.4 0.1 0.33 9.5 0.1 1.4 1 0 0 1 1 1 0 MutL protein tRNA-synt_2b PF00587.25 gi|242399373|ref|YP_002994797.1| - 5.1e-38 130.8 0.0 8.7e-38 130.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|242399373|ref|YP_002994797.1| - 1.4e-25 89.6 10.2 2.7e-25 88.7 10.2 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain CENP-F_leu_zip PF10473.9 gi|242399373|ref|YP_002994797.1| - 0.078 13.0 4.9 0.16 12.0 4.9 1.4 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HAUS2 PF15003.6 gi|242399373|ref|YP_002994797.1| - 0.14 11.9 1.1 0.32 10.7 1.1 1.6 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 2 YkyA PF10368.9 gi|242399373|ref|YP_002994797.1| - 0.32 10.7 7.6 0.56 9.9 7.6 1.3 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein Rpr2 PF04032.16 gi|242399374|ref|YP_002994798.1| - 3.8e-18 65.5 0.3 3.8e-18 65.5 0.3 1.5 2 0 0 2 2 2 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain NMD3 PF04981.13 gi|242399374|ref|YP_002994798.1| - 0.015 14.8 2.7 0.022 14.2 2.7 1.4 1 1 0 1 1 1 0 NMD3 family FEZ PF07763.13 gi|242399374|ref|YP_002994798.1| - 0.036 13.8 0.5 0.036 13.8 0.5 1.5 1 1 0 1 1 1 0 FEZ-like protein Glyoxalase_4 PF13669.6 gi|242399376|ref|YP_002994800.1| - 6.7e-24 84.3 0.0 7.7e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|242399376|ref|YP_002994800.1| - 1.9e-14 53.9 0.0 2.1e-14 53.8 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|242399376|ref|YP_002994800.1| - 1.5e-10 41.5 0.0 1.6e-10 41.4 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain DUF1338 PF07063.13 gi|242399376|ref|YP_002994800.1| - 0.054 12.7 0.0 4 6.5 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1338) PASTA PF03793.19 gi|242399376|ref|YP_002994800.1| - 0.13 12.2 0.0 1.9 8.4 0.0 2.1 2 0 0 2 2 2 0 PASTA domain MeaB PF03308.16 gi|242399377|ref|YP_002994801.1| - 8.6e-103 343.0 3.0 1e-102 342.7 3.0 1.0 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|242399377|ref|YP_002994801.1| - 1.6e-07 31.0 2.6 1.5e-06 28.0 2.6 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 gi|242399377|ref|YP_002994801.1| - 2.4e-06 27.3 0.1 3.2e-05 23.6 0.1 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain NTPase_1 PF03266.15 gi|242399377|ref|YP_002994801.1| - 1.6e-05 24.9 0.1 5.5e-05 23.1 0.1 1.9 1 0 0 1 1 1 1 NTPase ATP_bind_1 PF03029.17 gi|242399377|ref|YP_002994801.1| - 1.9e-05 24.6 0.1 0.00037 20.4 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|242399377|ref|YP_002994801.1| - 0.00014 21.6 0.1 0.0006 19.5 0.1 2.0 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|242399377|ref|YP_002994801.1| - 0.00015 22.1 0.0 0.00032 21.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain KAP_NTPase PF07693.14 gi|242399377|ref|YP_002994801.1| - 0.00023 20.5 0.0 0.00023 20.5 0.0 1.3 1 1 0 1 1 1 1 KAP family P-loop domain AAA_16 PF13191.6 gi|242399377|ref|YP_002994801.1| - 0.00026 21.4 0.0 0.00047 20.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|242399377|ref|YP_002994801.1| - 0.00039 21.0 0.1 0.00094 19.7 0.1 1.7 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|242399377|ref|YP_002994801.1| - 0.00052 20.5 0.1 0.00085 19.8 0.1 1.4 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|242399377|ref|YP_002994801.1| - 0.00076 19.2 0.2 0.0016 18.2 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|242399377|ref|YP_002994801.1| - 0.0011 18.2 0.1 0.0019 17.5 0.1 1.3 1 0 0 1 1 1 1 NB-ARC domain MobB PF03205.14 gi|242399377|ref|YP_002994801.1| - 0.0016 18.3 0.0 0.0075 16.2 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ATPase_2 PF01637.18 gi|242399377|ref|YP_002994801.1| - 0.0022 17.9 0.6 0.0048 16.8 0.1 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|242399377|ref|YP_002994801.1| - 0.003 17.6 0.8 0.022 14.8 0.8 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|242399377|ref|YP_002994801.1| - 0.0035 16.7 0.1 0.0065 15.8 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.6 gi|242399377|ref|YP_002994801.1| - 0.0036 17.5 0.2 0.015 15.4 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|242399377|ref|YP_002994801.1| - 0.0037 17.0 0.0 0.0076 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|242399377|ref|YP_002994801.1| - 0.0058 16.5 0.0 0.15 11.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|242399377|ref|YP_002994801.1| - 0.0074 16.7 1.6 0.049 14.1 0.1 2.6 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|242399377|ref|YP_002994801.1| - 0.011 14.8 0.0 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|242399377|ref|YP_002994801.1| - 0.013 15.4 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain RecA PF00154.21 gi|242399377|ref|YP_002994801.1| - 0.014 14.9 0.3 1.3 8.4 0.0 2.3 2 0 0 2 2 2 0 recA bacterial DNA recombination protein TrwB_AAD_bind PF10412.9 gi|242399377|ref|YP_002994801.1| - 0.014 14.3 0.1 0.024 13.5 0.1 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain RsgA_GTPase PF03193.16 gi|242399377|ref|YP_002994801.1| - 0.015 15.3 0.0 0.087 12.7 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase AAA_19 PF13245.6 gi|242399377|ref|YP_002994801.1| - 0.017 15.4 0.0 0.083 13.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|242399377|ref|YP_002994801.1| - 0.018 15.4 0.0 0.058 13.8 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 gi|242399377|ref|YP_002994801.1| - 0.018 15.1 0.0 0.037 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|242399377|ref|YP_002994801.1| - 0.022 14.0 0.0 0.031 13.4 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase FeoB_N PF02421.18 gi|242399377|ref|YP_002994801.1| - 0.022 14.3 0.0 0.51 9.9 0.0 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B RNA12 PF10443.9 gi|242399377|ref|YP_002994801.1| - 0.025 13.3 0.0 0.045 12.5 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein KTI12 PF08433.10 gi|242399377|ref|YP_002994801.1| - 0.025 14.0 0.1 0.067 12.6 0.0 1.7 2 0 0 2 2 1 0 Chromatin associated protein KTI12 DUF87 PF01935.17 gi|242399377|ref|YP_002994801.1| - 0.028 14.5 0.4 0.059 13.5 0.1 1.7 2 0 0 2 2 1 0 Helicase HerA, central domain AAA PF00004.29 gi|242399377|ref|YP_002994801.1| - 0.043 14.3 0.0 0.18 12.2 0.0 2.1 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|242399377|ref|YP_002994801.1| - 0.055 13.2 0.0 0.16 11.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.6 gi|242399377|ref|YP_002994801.1| - 0.085 13.1 0.1 0.17 12.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|242399377|ref|YP_002994801.1| - 0.085 12.9 0.0 0.25 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|242399377|ref|YP_002994801.1| - 0.089 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Viral_helicase1 PF01443.18 gi|242399377|ref|YP_002994801.1| - 0.14 11.9 0.1 0.22 11.2 0.1 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.6 gi|242399377|ref|YP_002994801.1| - 0.31 11.5 1.5 0.42 11.1 0.2 1.8 2 1 0 2 2 1 0 AAA domain B12-binding PF02310.19 gi|242399378|ref|YP_002994802.1| - 7.5e-24 84.1 0.3 8.8e-24 83.9 0.3 1.1 1 0 0 1 1 1 1 B12 binding domain MoCF_biosynth PF00994.24 gi|242399378|ref|YP_002994802.1| - 0.027 14.2 0.2 0.23 11.1 0.0 2.1 1 1 1 2 2 2 0 Probable molybdopterin binding domain Nitro_FeMo-Co PF02579.17 gi|242399378|ref|YP_002994802.1| - 0.082 13.3 0.2 17 5.8 0.0 2.8 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor DUF1611_N PF17396.2 gi|242399378|ref|YP_002994802.1| - 0.12 12.6 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain IMPDH PF00478.25 gi|242399378|ref|YP_002994802.1| - 0.16 11.0 0.0 0.19 10.7 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PHP PF02811.19 gi|242399379|ref|YP_002994803.1| - 3.9e-11 43.5 0.2 1.1e-10 42.1 0.1 1.8 2 1 0 2 2 2 1 PHP domain PHP_C PF13263.6 gi|242399379|ref|YP_002994803.1| - 0.0002 21.0 0.0 0.00072 19.3 0.0 1.9 2 0 0 2 2 2 1 PHP-associated PGA_cap PF09587.10 gi|242399379|ref|YP_002994803.1| - 0.056 12.9 0.0 0.91 8.9 0.0 2.3 2 1 0 2 2 2 0 Bacterial capsule synthesis protein PGA_cap Maf PF02545.14 gi|242399380|ref|YP_002994804.1| - 5.8e-55 185.6 0.0 6.9e-55 185.4 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein T2SSE PF00437.20 gi|242399381|ref|YP_002994805.1| - 5.6e-08 32.2 0.1 1.2e-07 31.0 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|242399381|ref|YP_002994805.1| - 2.1e-07 31.4 0.2 6.8e-07 29.8 0.2 1.9 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|242399381|ref|YP_002994805.1| - 7.3e-05 23.1 4.7 0.002 18.4 0.2 3.2 2 1 1 3 3 2 1 PIN like domain KH_1 PF00013.29 gi|242399381|ref|YP_002994805.1| - 9.2e-05 22.2 0.8 0.00027 20.7 0.8 1.8 1 0 0 1 1 1 1 KH domain PIN_4 PF13638.6 gi|242399381|ref|YP_002994805.1| - 0.00028 21.2 0.1 0.00065 20.0 0.1 1.6 1 0 0 1 1 1 1 PIN domain AAA_25 PF13481.6 gi|242399381|ref|YP_002994805.1| - 0.00038 20.1 0.1 0.0021 17.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|242399381|ref|YP_002994805.1| - 0.00045 19.6 0.0 0.016 14.6 0.0 2.4 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|242399381|ref|YP_002994805.1| - 0.0021 17.8 0.0 0.0041 16.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|242399381|ref|YP_002994805.1| - 0.0022 18.5 0.1 0.011 16.2 0.0 2.3 2 0 0 2 2 1 1 AAA domain KH_2 PF07650.17 gi|242399381|ref|YP_002994805.1| - 0.0027 17.5 1.3 0.0027 17.5 1.3 3.4 3 1 0 3 3 2 1 KH domain Thymidylate_kin PF02223.17 gi|242399381|ref|YP_002994805.1| - 0.0076 15.9 0.2 0.039 13.6 0.2 2.3 1 1 1 2 2 2 1 Thymidylate kinase KH_5 PF13184.6 gi|242399381|ref|YP_002994805.1| - 0.0092 16.0 1.7 0.03 14.4 0.2 2.7 2 0 0 2 2 1 1 NusA-like KH domain AAA_14 PF13173.6 gi|242399381|ref|YP_002994805.1| - 0.013 15.6 0.4 0.077 13.0 0.0 2.5 3 1 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|242399381|ref|YP_002994805.1| - 0.015 15.6 0.2 0.055 13.7 0.0 2.1 2 0 0 2 2 1 0 AAA domain AAA_16 PF13191.6 gi|242399381|ref|YP_002994805.1| - 0.016 15.6 0.0 0.063 13.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.14 gi|242399381|ref|YP_002994805.1| - 0.026 14.5 0.0 0.11 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|242399381|ref|YP_002994805.1| - 0.027 14.4 0.1 0.058 13.3 0.1 1.5 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|242399381|ref|YP_002994805.1| - 0.047 13.6 0.1 0.22 11.4 0.0 2.2 3 0 0 3 3 1 0 NTPase RNA_helicase PF00910.22 gi|242399381|ref|YP_002994805.1| - 0.048 14.0 0.0 0.13 12.7 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|242399381|ref|YP_002994805.1| - 0.049 13.3 0.4 0.1 12.3 0.1 1.7 2 0 0 2 2 1 0 AAA domain AAA PF00004.29 gi|242399381|ref|YP_002994805.1| - 0.053 14.0 0.1 0.18 12.2 0.1 2.0 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|242399381|ref|YP_002994805.1| - 0.055 13.2 0.1 0.28 10.9 0.1 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|242399381|ref|YP_002994805.1| - 0.059 12.6 0.0 0.15 11.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|242399381|ref|YP_002994805.1| - 0.066 13.4 0.0 0.62 10.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain Hydin_ADK PF17213.3 gi|242399381|ref|YP_002994805.1| - 0.075 13.3 0.4 0.17 12.2 0.4 1.6 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain KTI12 PF08433.10 gi|242399381|ref|YP_002994805.1| - 0.083 12.3 0.0 0.2 11.1 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ABC_tran PF00005.27 gi|242399381|ref|YP_002994805.1| - 0.1 13.1 0.0 0.4 11.2 0.0 2.0 2 0 0 2 2 1 0 ABC transporter AAA_22 PF13401.6 gi|242399381|ref|YP_002994805.1| - 0.18 12.1 0.1 2.6 8.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|242399381|ref|YP_002994805.1| - 0.19 11.7 1.0 0.63 10.0 0.0 2.3 3 0 0 3 3 2 0 Type III restriction enzyme, res subunit AAA_31 PF13614.6 gi|242399382|ref|YP_002994806.1| - 2e-25 89.8 0.1 8.7e-25 87.7 0.1 1.8 1 1 1 2 2 2 1 AAA domain CbiA PF01656.23 gi|242399382|ref|YP_002994806.1| - 1.2e-23 83.6 0.0 1.6e-23 83.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|242399382|ref|YP_002994806.1| - 5.4e-23 81.7 0.4 5e-22 78.6 0.4 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|242399382|ref|YP_002994806.1| - 8.1e-16 58.2 0.0 4.1e-15 55.9 0.0 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|242399382|ref|YP_002994806.1| - 4.4e-11 42.7 0.1 0.00026 20.5 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|242399382|ref|YP_002994806.1| - 5.1e-09 35.8 0.0 1e-08 34.8 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|242399382|ref|YP_002994806.1| - 2e-05 24.5 0.0 4.8e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|242399382|ref|YP_002994806.1| - 5e-05 22.6 0.9 0.00052 19.3 1.0 2.4 1 1 1 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|242399382|ref|YP_002994806.1| - 0.0024 17.5 0.0 0.0034 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|242399382|ref|YP_002994806.1| - 0.023 14.4 0.0 0.041 13.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.11 gi|242399382|ref|YP_002994806.1| - 0.032 13.5 1.0 0.05 12.9 1.0 1.4 1 1 0 1 1 1 0 VirC1 protein AAA_24 PF13479.6 gi|242399382|ref|YP_002994806.1| - 0.062 13.0 0.7 0.13 12.0 0.7 1.5 1 1 0 1 1 1 0 AAA domain KH_7 PF17214.3 gi|242399382|ref|YP_002994806.1| - 0.074 13.0 0.0 0.42 10.6 0.0 2.1 2 0 0 2 2 2 0 KH domain ATP_bind_1 PF03029.17 gi|242399382|ref|YP_002994806.1| - 0.27 11.0 0.9 1.2 8.8 0.9 1.9 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein Asn_synthase PF00733.21 gi|242399383|ref|YP_002994807.1| - 3e-53 181.7 0.1 6.2e-31 108.3 0.0 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_7 PF13537.6 gi|242399383|ref|YP_002994807.1| - 7.4e-26 90.5 0.0 1.5e-25 89.5 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|242399383|ref|YP_002994807.1| - 3.1e-21 76.0 0.0 9e-21 74.5 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain QueC PF06508.13 gi|242399383|ref|YP_002994807.1| - 0.0011 18.5 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|242399383|ref|YP_002994807.1| - 0.015 14.5 0.0 0.029 13.5 0.0 1.5 1 0 0 1 1 1 0 NAD synthase Arginosuc_synth PF00764.19 gi|242399383|ref|YP_002994807.1| - 0.02 14.2 0.0 0.076 12.3 0.0 1.8 2 0 0 2 2 2 0 Arginosuccinate synthase CW_binding_2 PF04122.12 gi|242399384|ref|YP_002994808.1| - 1.2e-05 25.8 2.2 0.15 12.8 0.0 3.4 4 0 0 4 4 3 2 Putative cell wall binding repeat 2 YfdX PF10938.8 gi|242399384|ref|YP_002994808.1| - 0.011 15.7 11.4 0.035 14.0 11.4 1.9 1 0 0 1 1 1 0 YfdX protein DUF3858 PF12970.7 gi|242399384|ref|YP_002994808.1| - 0.021 14.8 0.9 0.041 13.9 0.9 1.5 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3858) DUF4363 PF14276.6 gi|242399384|ref|YP_002994808.1| - 0.026 14.6 6.2 0.053 13.6 0.9 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) Zw10 PF06248.13 gi|242399384|ref|YP_002994808.1| - 0.038 12.6 2.6 0.031 12.9 1.0 1.6 2 0 0 2 2 2 0 Centromere/kinetochore Zw10 DUF1771 PF08590.10 gi|242399384|ref|YP_002994808.1| - 0.073 13.5 5.4 0.52 10.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) HEPN PF05168.14 gi|242399384|ref|YP_002994808.1| - 0.093 12.9 7.3 2.8 8.1 5.1 3.1 1 1 1 2 2 2 0 HEPN domain DUF4398 PF14346.6 gi|242399384|ref|YP_002994808.1| - 0.11 13.1 11.6 0.31 11.7 0.4 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4398) DUF2624 PF11116.8 gi|242399384|ref|YP_002994808.1| - 0.13 13.1 2.6 27 5.7 0.0 3.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2624) Thioredoxin_5 PF13743.6 gi|242399384|ref|YP_002994808.1| - 0.14 11.8 1.3 0.24 11.1 1.3 1.3 1 0 0 1 1 1 0 Thioredoxin DUF3813 PF12758.7 gi|242399384|ref|YP_002994808.1| - 0.15 12.4 0.8 10 6.5 0.6 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3813) DUF2564 PF10819.8 gi|242399384|ref|YP_002994808.1| - 0.18 12.2 3.8 3.8 8.0 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2564) SBP_bac_5 PF00496.22 gi|242399384|ref|YP_002994808.1| - 0.32 9.9 5.1 0.46 9.4 3.6 1.8 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 5 Middle BAR PF03114.18 gi|242399384|ref|YP_002994808.1| - 0.35 10.5 4.9 0.55 9.8 4.9 1.2 1 0 0 1 1 1 0 BAR domain EIF_2_alpha PF07541.12 gi|242399384|ref|YP_002994808.1| - 0.37 10.9 6.6 1.7 8.7 5.5 2.6 1 1 1 2 2 2 0 Eukaryotic translation initiation factor 2 alpha subunit CbiG_N PF11760.8 gi|242399384|ref|YP_002994808.1| - 0.41 10.7 1.9 0.49 10.4 0.2 2.0 2 0 0 2 2 2 0 Cobalamin synthesis G N-terminal Macoilin PF09726.9 gi|242399384|ref|YP_002994808.1| - 0.49 8.9 6.0 0.56 8.7 6.0 1.1 1 0 0 1 1 1 0 Macoilin family PTS_IIA PF02255.16 gi|242399384|ref|YP_002994808.1| - 1.3 9.1 6.0 1.8 8.7 0.4 2.9 2 1 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit PIN_2 PF10130.9 gi|242399384|ref|YP_002994808.1| - 1.7 8.9 8.2 6.4 7.0 2.3 2.9 1 1 0 2 2 2 0 PIN domain SMBP PF16785.5 gi|242399384|ref|YP_002994808.1| - 7.5 6.8 11.6 1 9.6 0.2 2.8 1 1 2 3 3 3 0 Small metal-binding protein Glyco_transf_4 PF13439.6 gi|242399385|ref|YP_002994809.1| - 2.3e-31 109.1 0.1 3.6e-31 108.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|242399385|ref|YP_002994809.1| - 5.8e-29 100.8 0.8 4.5e-28 97.9 0.2 2.6 2 1 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|242399385|ref|YP_002994809.1| - 2.2e-25 89.7 0.1 2.7e-23 82.9 0.0 2.9 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|242399385|ref|YP_002994809.1| - 2.1e-21 76.4 1.5 4.8e-21 75.3 0.9 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|242399385|ref|YP_002994809.1| - 8.5e-20 71.8 0.0 1.1e-19 71.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|242399385|ref|YP_002994809.1| - 3e-06 27.5 0.0 5.5e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3492 PF11997.8 gi|242399385|ref|YP_002994809.1| - 1.2e-05 25.2 1.8 0.0018 18.0 0.2 3.0 3 1 1 4 4 4 2 Domain of unknown function (DUF3492) Glyco_transf_5 PF08323.11 gi|242399385|ref|YP_002994809.1| - 0.001 18.8 0.2 0.19 11.4 0.0 2.6 1 1 1 2 2 2 1 Starch synthase catalytic domain TMEM173 PF15009.6 gi|242399385|ref|YP_002994809.1| - 0.039 13.1 0.0 0.061 12.5 0.0 1.3 1 0 0 1 1 1 0 Transmembrane protein 173 PEP-utilizers PF00391.23 gi|242399385|ref|YP_002994809.1| - 0.097 12.4 0.3 9.6 6.0 0.0 3.1 3 0 0 3 3 3 0 PEP-utilising enzyme, mobile domain Sua5_yciO_yrdC PF01300.18 gi|242399386|ref|YP_002994810.1| - 9.2e-61 204.5 0.0 1.8e-60 203.5 0.0 1.5 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.13 gi|242399386|ref|YP_002994810.1| - 3.2e-36 124.8 0.2 5e-36 124.2 0.2 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding RuvX PF03652.15 gi|242399386|ref|YP_002994810.1| - 0.028 14.8 0.2 1.6 9.1 0.0 2.4 1 1 1 2 2 2 0 Holliday junction resolvase Isochorismatase PF00857.20 gi|242399386|ref|YP_002994810.1| - 0.14 12.4 0.6 8 6.6 0.0 2.6 2 1 0 2 2 2 0 Isochorismatase family SNAP PF14938.6 gi|242399387|ref|YP_002994811.1| - 0.0023 17.4 15.1 0.012 15.1 1.5 4.6 1 1 0 2 2 2 1 Soluble NSF attachment protein, SNAP LBR_tudor PF09465.10 gi|242399387|ref|YP_002994811.1| - 0.29 11.0 2.2 3.3 7.6 0.1 2.5 1 1 1 2 2 2 0 Lamin-B receptor of TUDOR domain TPR_12 PF13424.6 gi|242399387|ref|YP_002994811.1| - 1.1 9.6 6.5 6.5 7.1 0.0 4.3 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|242399387|ref|YP_002994811.1| - 7.2 6.6 10.3 2.8 7.9 0.1 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat HTH_11 PF08279.12 gi|242399388|ref|YP_002994812.1| - 1.3e-07 31.4 0.2 1.7e-07 31.0 0.2 1.2 1 1 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|242399388|ref|YP_002994812.1| - 1.6e-07 31.3 0.1 2e-07 31.0 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|242399388|ref|YP_002994812.1| - 1.3e-06 27.8 0.1 1.6e-06 27.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.10 gi|242399388|ref|YP_002994812.1| - 9.1e-06 25.5 0.4 1.9e-05 24.5 0.4 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|242399388|ref|YP_002994812.1| - 1.3e-05 25.0 0.1 1.7e-05 24.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|242399388|ref|YP_002994812.1| - 5.6e-05 22.9 0.2 6.6e-05 22.7 0.2 1.1 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|242399388|ref|YP_002994812.1| - 0.0018 18.6 0.1 0.0023 18.2 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator RepL PF05732.11 gi|242399388|ref|YP_002994812.1| - 0.0051 16.3 0.0 0.0065 15.9 0.0 1.1 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_Mga PF08280.11 gi|242399388|ref|YP_002994812.1| - 0.0093 16.0 0.1 0.013 15.5 0.1 1.1 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_AsnC-type PF13404.6 gi|242399388|ref|YP_002994812.1| - 0.0097 15.7 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|242399388|ref|YP_002994812.1| - 0.01 15.5 0.1 0.013 15.1 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HrcA_DNA-bdg PF03444.15 gi|242399388|ref|YP_002994812.1| - 0.013 15.1 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF2582 PF10771.9 gi|242399388|ref|YP_002994812.1| - 0.02 15.1 0.0 0.025 14.7 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) Put_DNA-bind_N PF06971.13 gi|242399388|ref|YP_002994812.1| - 0.02 14.9 0.1 0.036 14.1 0.1 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_IclR PF09339.10 gi|242399388|ref|YP_002994812.1| - 0.027 14.3 0.0 0.036 13.8 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|242399388|ref|YP_002994812.1| - 0.029 14.0 0.7 0.053 13.2 0.1 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_27 PF13463.6 gi|242399388|ref|YP_002994812.1| - 0.031 14.8 0.2 0.035 14.6 0.1 1.2 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_26 PF13443.6 gi|242399388|ref|YP_002994812.1| - 0.033 14.6 0.0 0.047 14.1 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MarR PF01047.22 gi|242399388|ref|YP_002994812.1| - 0.049 13.6 0.0 0.056 13.4 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_41 PF14502.6 gi|242399388|ref|YP_002994812.1| - 0.054 13.2 0.0 0.069 12.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|242399388|ref|YP_002994812.1| - 0.063 13.1 0.1 0.063 13.1 0.1 1.7 2 0 0 2 2 2 0 MerR family regulatory protein HTH_10 PF04967.12 gi|242399388|ref|YP_002994812.1| - 0.087 12.6 0.1 0.75 9.6 0.1 2.0 2 0 0 2 2 2 0 HTH DNA binding domain ArsR PF09824.9 gi|242399388|ref|YP_002994812.1| - 0.09 12.4 0.0 0.094 12.3 0.0 1.0 1 0 0 1 1 1 0 ArsR transcriptional regulator Replic_Relax PF13814.6 gi|242399388|ref|YP_002994812.1| - 0.092 12.8 0.1 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation Phage_rep_org_N PF09681.10 gi|242399388|ref|YP_002994812.1| - 0.11 12.4 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) GerE PF00196.19 gi|242399388|ref|YP_002994812.1| - 0.12 12.0 0.1 0.17 11.5 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_9 PF08221.11 gi|242399388|ref|YP_002994812.1| - 0.15 12.2 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_36 PF13730.6 gi|242399388|ref|YP_002994812.1| - 0.16 11.9 0.1 0.23 11.5 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain YqbF PF14553.6 gi|242399389|ref|YP_002994813.1| - 0.17 11.8 0.8 0.44 10.5 0.8 1.7 1 0 0 1 1 1 0 YqbF, hypothetical protein domain NTP_transf_2 PF01909.23 gi|242399392|ref|YP_002994816.1| - 1.8e-08 34.6 0.1 4.3e-08 33.3 0.1 1.9 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|242399392|ref|YP_002994816.1| - 3.8e-05 23.7 0.1 0.00013 22.0 0.1 1.9 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF4269 PF14091.6 gi|242399392|ref|YP_002994816.1| - 0.00035 20.9 0.0 0.00068 19.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4269) DUF5122 PF17164.4 gi|242399393|ref|YP_002994817.1| - 2.5e-15 56.5 16.8 0.00098 19.4 0.9 6.7 6 0 0 6 6 6 5 Domain of unknown function (DUF5122) beta-propeller Arylsulfotrans PF05935.11 gi|242399393|ref|YP_002994817.1| - 1.2e-05 24.4 1.6 0.0015 17.5 0.3 3.0 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) Kelch_3 PF13415.6 gi|242399393|ref|YP_002994817.1| - 0.0048 17.2 3.6 12 6.3 0.0 4.1 3 1 0 3 3 3 1 Galactose oxidase, central domain Peptidase_S24 PF00717.23 gi|242399393|ref|YP_002994817.1| - 0.0071 16.3 3.6 4.5 7.3 0.0 4.2 4 1 0 4 4 4 2 Peptidase S24-like NHL PF01436.21 gi|242399393|ref|YP_002994817.1| - 0.093 12.8 20.2 8.3 6.7 0.1 6.2 6 0 0 6 6 6 0 NHL repeat PQQ_3 PF13570.6 gi|242399393|ref|YP_002994817.1| - 0.11 13.1 16.6 0.28 11.7 0.3 5.1 5 0 0 5 5 5 0 PQQ-like domain TonB_2 PF13103.6 gi|242399393|ref|YP_002994817.1| - 0.4 11.0 1.5 16 5.8 0.1 3.0 2 1 1 3 3 3 0 TonB C terminal Kelch_4 PF13418.6 gi|242399393|ref|YP_002994817.1| - 0.81 9.7 0.0 0.81 9.7 0.0 4.0 4 0 0 4 4 4 0 Galactose oxidase, central domain DUF5643 PF18705.1 gi|242399393|ref|YP_002994817.1| - 3.5 7.6 6.5 28 4.7 0.4 3.3 2 1 1 3 3 3 0 Family of unknown function (DUF5643) Cupin_2 PF07883.11 gi|242399394|ref|YP_002994818.1| - 1.8e-10 40.4 0.1 2.3e-10 40.0 0.1 1.1 1 0 0 1 1 1 1 Cupin domain 3-HAO PF06052.12 gi|242399394|ref|YP_002994818.1| - 6.1e-06 25.9 0.0 6.1e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyanthranilic acid dioxygenase Cupin_1 PF00190.22 gi|242399394|ref|YP_002994818.1| - 0.0082 15.8 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|242399394|ref|YP_002994818.1| - 0.013 15.2 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|242399394|ref|YP_002994818.1| - 0.018 14.8 0.0 0.019 14.7 0.0 1.1 1 0 0 1 1 1 0 Cupin CENP-C_C PF11699.8 gi|242399394|ref|YP_002994818.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.5 1 1 1 2 2 2 0 Mif2/CENP-C like AraC_binding PF02311.19 gi|242399394|ref|YP_002994818.1| - 0.11 12.4 0.1 0.14 12.1 0.1 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_4 PF08007.12 gi|242399394|ref|YP_002994818.1| - 0.13 11.7 0.1 0.16 11.4 0.1 1.2 1 0 0 1 1 1 0 Cupin superfamily protein PNP_UDP_1 PF01048.20 gi|242399395|ref|YP_002994819.1| - 1.3e-52 178.4 0.0 1.4e-52 178.3 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily RPN7 PF10602.9 gi|242399396|ref|YP_002994820.1| - 0.00016 21.4 0.0 1.6 8.4 0.0 3.6 2 2 2 4 4 4 1 26S proteasome subunit RPN7 TPR_12 PF13424.6 gi|242399396|ref|YP_002994820.1| - 0.0021 18.3 2.3 0.052 13.8 0.1 3.2 4 0 0 4 4 4 1 Tetratricopeptide repeat pRN1_helical PF13010.6 gi|242399396|ref|YP_002994820.1| - 0.11 12.5 0.1 0.35 10.8 0.1 1.9 2 0 0 2 2 2 0 Primase helical domain CdiI_2 PF18593.1 gi|242399396|ref|YP_002994820.1| - 0.13 12.9 0.2 5 7.9 0.0 3.3 3 2 0 4 4 4 0 CdiI immunity protein Foie-gras_1 PF11817.8 gi|242399396|ref|YP_002994820.1| - 0.16 11.5 0.2 3.3 7.2 0.0 2.7 3 0 0 3 3 3 0 Foie gras liver health family 1 TPR_2 PF07719.17 gi|242399396|ref|YP_002994820.1| - 0.69 10.2 4.8 1.5 9.1 0.0 4.1 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|242399396|ref|YP_002994820.1| - 0.99 9.3 0.0 0.99 9.3 0.0 3.5 6 0 0 6 6 6 0 Tetratricopeptide repeat LcrG PF07216.12 gi|242399396|ref|YP_002994820.1| - 1.3 9.0 3.5 8.1 6.4 0.5 2.9 3 0 0 3 3 3 0 LcrG protein Ycf54 PF10674.9 gi|242399397|ref|YP_002994821.1| - 0.082 13.2 0.0 0.088 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2488) ribosomal_L24 PF17136.4 gi|242399397|ref|YP_002994821.1| - 0.13 12.7 0.1 0.42 11.1 0.1 1.7 2 0 0 2 2 2 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 DUF89 PF01937.19 gi|242399398|ref|YP_002994822.1| - 5.9e-50 170.2 0.5 6.7e-50 170.0 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 DUF3198 PF11433.8 gi|242399399|ref|YP_002994823.1| - 0.035 14.0 0.2 0.043 13.7 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3198) SRP54 PF00448.22 gi|242399400|ref|YP_002994824.1| - 5.3e-75 251.4 0.0 1e-74 250.4 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|242399400|ref|YP_002994824.1| - 7.1e-34 116.4 4.5 1.6e-33 115.3 3.4 2.2 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|242399400|ref|YP_002994824.1| - 1.8e-19 69.7 2.8 1.8e-19 69.7 2.8 2.5 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|242399400|ref|YP_002994824.1| - 4.6e-05 23.5 0.0 0.00015 21.8 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|242399400|ref|YP_002994824.1| - 5.9e-05 23.4 0.1 0.00024 21.4 0.0 2.0 2 0 0 2 2 1 1 AAA domain cobW PF02492.19 gi|242399400|ref|YP_002994824.1| - 0.0002 21.0 1.2 0.011 15.3 0.7 2.6 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|242399400|ref|YP_002994824.1| - 0.00062 19.7 0.6 0.0019 18.1 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|242399400|ref|YP_002994824.1| - 0.0013 17.7 0.4 0.01 14.9 0.1 2.3 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_17 PF13207.6 gi|242399400|ref|YP_002994824.1| - 0.0014 19.1 0.1 0.0014 19.1 0.1 2.3 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.6 gi|242399400|ref|YP_002994824.1| - 0.0026 17.9 0.0 0.0057 16.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|242399400|ref|YP_002994824.1| - 0.0031 17.3 0.0 0.0093 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain IMPDH PF00478.25 gi|242399400|ref|YP_002994824.1| - 0.0033 16.5 0.3 0.0063 15.6 0.3 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain 6PF2K PF01591.18 gi|242399400|ref|YP_002994824.1| - 0.0036 16.7 0.0 0.01 15.2 0.0 1.8 1 0 0 1 1 1 1 6-phosphofructo-2-kinase Fe-ADH PF00465.19 gi|242399400|ref|YP_002994824.1| - 0.0055 15.6 0.0 0.011 14.6 0.0 1.5 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase ATP_bind_1 PF03029.17 gi|242399400|ref|YP_002994824.1| - 0.0064 16.3 2.0 0.0085 15.9 0.1 2.1 2 1 1 3 3 3 1 Conserved hypothetical ATP binding protein Glyco_transf_4 PF13439.6 gi|242399400|ref|YP_002994824.1| - 0.0076 16.3 0.0 0.027 14.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 AAA_16 PF13191.6 gi|242399400|ref|YP_002994824.1| - 0.0078 16.6 0.0 0.028 14.8 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.15 gi|242399400|ref|YP_002994824.1| - 0.0095 15.9 1.2 0.053 13.4 0.1 2.4 2 0 0 2 2 2 1 NTPase Zeta_toxin PF06414.12 gi|242399400|ref|YP_002994824.1| - 0.0099 15.2 0.2 0.028 13.7 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin RNase_Zc3h12a PF11977.8 gi|242399400|ref|YP_002994824.1| - 0.016 15.0 0.3 1.4 8.7 0.0 2.7 2 1 1 3 3 3 0 Zc3h12a-like Ribonuclease NYN domain APS_kinase PF01583.20 gi|242399400|ref|YP_002994824.1| - 0.017 15.0 0.5 0.083 12.8 0.0 2.3 3 0 0 3 3 3 0 Adenylylsulphate kinase Beach PF02138.18 gi|242399400|ref|YP_002994824.1| - 0.019 14.4 0.5 0.029 13.7 0.5 1.2 1 0 0 1 1 1 0 Beige/BEACH domain KTI12 PF08433.10 gi|242399400|ref|YP_002994824.1| - 0.021 14.3 2.1 0.074 12.5 0.0 2.6 3 0 0 3 3 3 0 Chromatin associated protein KTI12 LpxK PF02606.14 gi|242399400|ref|YP_002994824.1| - 0.026 13.6 0.2 0.067 12.3 0.2 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase tRNA_lig_kinase PF08303.11 gi|242399400|ref|YP_002994824.1| - 0.038 14.1 1.1 1 9.4 0.0 2.8 2 1 1 3 3 2 0 tRNA ligase kinase domain Bromo_TP_like PF17027.5 gi|242399400|ref|YP_002994824.1| - 0.048 13.8 0.3 0.22 11.7 0.3 2.1 1 0 0 1 1 1 0 Histone-fold protein VirE PF05272.11 gi|242399400|ref|YP_002994824.1| - 0.048 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Virulence-associated protein E Thymidylate_kin PF02223.17 gi|242399400|ref|YP_002994824.1| - 0.059 13.1 1.7 0.081 12.6 0.1 2.0 2 0 0 2 2 1 0 Thymidylate kinase Mod_r PF07200.13 gi|242399400|ref|YP_002994824.1| - 0.096 12.8 1.2 1.4 9.0 0.3 2.4 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF4763 PF15960.5 gi|242399400|ref|YP_002994824.1| - 0.28 10.4 2.9 1.7 7.9 2.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) ASL_C PF08328.11 gi|242399400|ref|YP_002994824.1| - 0.52 10.4 3.7 9.5 6.4 0.3 3.4 3 0 0 3 3 3 0 Adenylosuccinate lyase C-terminal AsnC_trans_reg PF01037.21 gi|242399401|ref|YP_002994825.1| - 7.7e-18 64.2 0.2 8.9e-18 64.0 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|242399401|ref|YP_002994825.1| - 0.027 14.5 0.2 0.093 12.8 0.2 1.7 1 1 0 1 1 1 0 NapD protein GARS_N PF02844.15 gi|242399401|ref|YP_002994825.1| - 0.066 14.0 0.0 0.071 13.9 0.0 1.1 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain CxxCxxCC PF03692.15 gi|242399402|ref|YP_002994826.1| - 3.3e-15 56.5 0.8 4.5e-15 56.1 0.8 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|242399402|ref|YP_002994826.1| - 0.02 14.7 0.9 2.5 7.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3109) Nit_Regul_Hom PF10126.9 gi|242399402|ref|YP_002994826.1| - 0.068 13.2 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII Pribosyltran PF00156.27 gi|242399403|ref|YP_002994827.1| - 1.1e-11 44.5 0.2 1.6e-11 44.0 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|242399403|ref|YP_002994827.1| - 1.2e-05 25.3 0.3 2.3e-05 24.3 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|242399403|ref|YP_002994827.1| - 0.02 14.4 0.1 0.18 11.4 0.1 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|242399403|ref|YP_002994827.1| - 0.027 14.9 0.0 0.058 13.8 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain PepSY_like PF11396.8 gi|242399403|ref|YP_002994827.1| - 0.036 14.6 0.4 0.14 12.7 0.0 2.2 3 1 0 3 3 3 0 Putative beta-lactamase-inhibitor-like, PepSY-like Trp_repressor PF01371.19 gi|242399403|ref|YP_002994827.1| - 0.11 12.6 0.1 0.35 11.0 0.1 1.8 1 0 0 1 1 1 0 Trp repressor protein MqsA_antitoxin PF15731.5 gi|242399403|ref|YP_002994827.1| - 0.14 12.3 0.1 0.31 11.1 0.1 1.6 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA zf-C2H2_aberr PF17017.5 gi|242399404|ref|YP_002994828.1| - 0.012 15.8 0.1 0.014 15.6 0.1 1.1 1 0 0 1 1 1 0 Aberrant zinc-finger zf-RAG1 PF10426.9 gi|242399404|ref|YP_002994828.1| - 0.2 11.8 1.7 2.7 8.2 0.4 2.4 2 0 0 2 2 2 0 Recombination-activating protein 1 zinc-finger domain HTH_24 PF13412.6 gi|242399405|ref|YP_002994829.1| - 3.2e-19 68.2 0.6 6.7e-19 67.2 0.6 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|242399405|ref|YP_002994829.1| - 1.5e-16 59.9 0.1 2.5e-16 59.2 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|242399405|ref|YP_002994829.1| - 5.6e-14 51.9 0.1 8.6e-14 51.3 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_23 PF13384.6 gi|242399405|ref|YP_002994829.1| - 2.2e-07 30.5 0.1 3.9e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|242399405|ref|YP_002994829.1| - 2.4e-07 30.6 0.1 4.1e-07 29.8 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|242399405|ref|YP_002994829.1| - 1.3e-06 28.4 0.0 2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|242399405|ref|YP_002994829.1| - 1.5e-06 28.2 0.0 2.9e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|242399405|ref|YP_002994829.1| - 2.4e-06 27.3 0.0 3.9e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|242399405|ref|YP_002994829.1| - 7e-06 25.6 0.0 1.4e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|242399405|ref|YP_002994829.1| - 4.5e-05 23.1 0.2 0.0001 22.0 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_50 PF18024.1 gi|242399405|ref|YP_002994829.1| - 0.00024 20.6 0.1 0.00064 19.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|242399405|ref|YP_002994829.1| - 0.00025 20.9 0.1 0.00056 19.8 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_41 PF14502.6 gi|242399405|ref|YP_002994829.1| - 0.00049 19.7 0.0 0.0013 18.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|242399405|ref|YP_002994829.1| - 0.0005 19.9 0.5 0.0014 18.5 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|242399405|ref|YP_002994829.1| - 0.00074 19.3 0.0 0.0012 18.6 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_30 PF13556.6 gi|242399405|ref|YP_002994829.1| - 0.00088 19.0 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_DeoR PF08220.12 gi|242399405|ref|YP_002994829.1| - 0.00098 18.8 0.1 0.0026 17.5 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|242399405|ref|YP_002994829.1| - 0.001 18.7 0.1 0.0019 17.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|242399405|ref|YP_002994829.1| - 0.0016 18.4 0.0 0.0031 17.5 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Crp PF00325.20 gi|242399405|ref|YP_002994829.1| - 0.0039 16.8 0.0 0.0073 15.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_29 PF13551.6 gi|242399405|ref|YP_002994829.1| - 0.0048 16.9 0.0 0.009 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_40 PF14493.6 gi|242399405|ref|YP_002994829.1| - 0.0051 17.2 0.1 0.012 16.0 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.11 gi|242399405|ref|YP_002994829.1| - 0.0064 16.0 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 CodY helix-turn-helix domain TnsD PF15978.5 gi|242399405|ref|YP_002994829.1| - 0.0073 15.3 0.1 0.011 14.8 0.1 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_10 PF04967.12 gi|242399405|ref|YP_002994829.1| - 0.0085 15.9 0.1 0.017 14.9 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|242399405|ref|YP_002994829.1| - 0.0098 15.4 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_34 PF13601.6 gi|242399405|ref|YP_002994829.1| - 0.01 16.0 0.1 0.028 14.6 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain TetR_N PF00440.23 gi|242399405|ref|YP_002994829.1| - 0.01 15.6 0.0 0.025 14.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_36 PF13730.6 gi|242399405|ref|YP_002994829.1| - 0.01 15.8 0.1 0.016 15.2 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|242399405|ref|YP_002994829.1| - 0.012 15.5 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 MarR family AsnC_trans_reg2 PF17805.1 gi|242399405|ref|YP_002994829.1| - 0.023 14.8 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 AsnC-like ligand binding domain LexA_DNA_bind PF01726.16 gi|242399405|ref|YP_002994829.1| - 0.024 14.4 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Mga PF08280.11 gi|242399405|ref|YP_002994829.1| - 0.026 14.6 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain FUR PF01475.19 gi|242399405|ref|YP_002994829.1| - 0.029 14.5 0.0 0.049 13.8 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family RepL PF05732.11 gi|242399405|ref|YP_002994829.1| - 0.046 13.1 0.0 0.073 12.5 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Fe_dep_repress PF01325.19 gi|242399405|ref|YP_002994829.1| - 0.047 13.9 0.0 0.16 12.2 0.0 1.9 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PadR PF03551.14 gi|242399405|ref|YP_002994829.1| - 0.055 13.4 0.1 0.13 12.2 0.1 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family DDRGK PF09756.9 gi|242399405|ref|YP_002994829.1| - 0.064 12.9 0.1 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_12 PF08461.10 gi|242399405|ref|YP_002994829.1| - 0.075 13.0 0.4 0.19 11.7 0.4 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain GYD PF08734.11 gi|242399405|ref|YP_002994829.1| - 0.077 13.0 0.1 0.21 11.6 0.0 1.7 2 0 0 2 2 2 0 GYD domain HTH_22 PF13309.6 gi|242399405|ref|YP_002994829.1| - 0.087 12.9 0.0 0.19 11.8 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_32 PF13565.6 gi|242399405|ref|YP_002994829.1| - 0.088 13.4 0.0 0.29 11.8 0.0 1.8 1 1 1 2 2 2 0 Homeodomain-like domain NUMOD1 PF07453.13 gi|242399405|ref|YP_002994829.1| - 0.12 12.7 0.1 2.4 8.5 0.0 2.4 2 0 0 2 2 2 0 NUMOD1 domain HTH_Tnp_Tc3_2 PF01498.18 gi|242399405|ref|YP_002994829.1| - 0.13 12.5 0.1 0.32 11.3 0.1 1.6 2 0 0 2 2 1 0 Transposase HTH_Tnp_ISL3 PF13542.6 gi|242399405|ref|YP_002994829.1| - 0.18 11.3 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 ThiS PF02597.20 gi|242399406|ref|YP_002994831.1| - 2.5e-10 40.9 0.2 2.9e-10 40.6 0.2 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|242399406|ref|YP_002994831.1| - 0.0021 18.1 0.1 0.0027 17.7 0.1 1.2 1 0 0 1 1 1 1 TGS domain Ub-Mut7C PF14451.6 gi|242399406|ref|YP_002994831.1| - 0.0036 17.1 0.1 0.0042 16.9 0.1 1.1 1 0 0 1 1 1 1 Mut7-C ubiquitin FERM_f0 PF16511.5 gi|242399406|ref|YP_002994831.1| - 0.072 13.4 0.3 0.091 13.1 0.3 1.4 1 1 0 1 1 1 0 N-terminal or F0 domain of Talin-head FERM Aminotran_1_2 PF00155.21 gi|242399408|ref|YP_002994833.1| - 7.4e-56 189.9 0.0 8.9e-56 189.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|242399408|ref|YP_002994833.1| - 2.1e-05 24.0 0.0 6.3e-05 22.4 0.0 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|242399408|ref|YP_002994833.1| - 2.5e-05 23.7 0.0 0.00012 21.5 0.0 1.9 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|242399408|ref|YP_002994833.1| - 0.054 12.4 0.0 0.43 9.5 0.0 2.1 2 0 0 2 2 2 0 Aminotransferase class-V HypD PF01924.16 gi|242399409|ref|YP_002994834.1| - 1.1e-133 445.7 0.0 1.3e-133 445.5 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family HupF_HypC PF01455.18 gi|242399410|ref|YP_002994835.1| - 3.3e-29 100.8 0.2 3.8e-29 100.6 0.2 1.1 1 0 0 1 1 1 1 HupF/HypC family AHSA1 PF08327.11 gi|242399410|ref|YP_002994835.1| - 0.11 12.8 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein DHDPS PF00701.22 gi|242399411|ref|YP_002994836.1| - 9.3e-70 234.6 0.0 1e-69 234.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family WHIM1 PF15612.6 gi|242399411|ref|YP_002994836.1| - 0.025 14.1 0.0 0.069 12.7 0.0 1.7 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 1 Fer4_12 PF13353.6 gi|242399411|ref|YP_002994836.1| - 0.19 12.0 0.0 0.47 10.7 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain PfkB PF00294.24 gi|242399412|ref|YP_002994837.1| - 9.3e-10 38.3 0.0 6.3e-06 25.7 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase NUDIX PF00293.28 gi|242399413|ref|YP_002994838.1| - 1.1e-22 80.5 0.0 1.5e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain DUF498 PF04430.14 gi|242399414|ref|YP_002994839.1| - 5.2e-13 49.0 0.0 6.2e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) 12TM_1 PF09847.9 gi|242399415|ref|YP_002994840.1| - 1.8e-61 208.6 53.3 2.1e-61 208.4 53.3 1.0 1 0 0 1 1 1 1 Membrane protein of 12 TMs ABC_tran PF00005.27 gi|242399416|ref|YP_002994841.1| - 4.7e-29 101.6 0.0 8.3e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242399416|ref|YP_002994841.1| - 6.7e-14 52.4 3.4 9.6e-09 35.5 0.5 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_10 PF12846.7 gi|242399416|ref|YP_002994841.1| - 0.00084 18.4 0.0 0.0017 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_22 PF13401.6 gi|242399416|ref|YP_002994841.1| - 0.0035 17.6 0.3 3.8 7.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|242399416|ref|YP_002994841.1| - 0.013 15.2 0.0 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|242399416|ref|YP_002994841.1| - 0.017 14.6 0.8 1.2 8.5 0.3 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|242399416|ref|YP_002994841.1| - 0.019 14.7 0.2 0.035 13.8 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Fer4_NifH PF00142.18 gi|242399416|ref|YP_002994841.1| - 0.023 14.2 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_18 PF13238.6 gi|242399416|ref|YP_002994841.1| - 0.026 15.1 0.2 0.68 10.5 0.2 2.3 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|242399416|ref|YP_002994841.1| - 0.11 12.7 0.0 0.23 11.7 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.17 gi|242399416|ref|YP_002994841.1| - 0.12 12.4 0.5 0.56 10.3 0.5 2.1 1 1 0 1 1 1 0 Helicase HerA, central domain AAA_15 PF13175.6 gi|242399416|ref|YP_002994841.1| - 0.31 10.7 3.1 1.5 8.4 0.1 2.6 2 1 0 3 3 3 0 AAA ATPase domain AAA_23 PF13476.6 gi|242399416|ref|YP_002994841.1| - 0.66 10.4 5.8 0.21 12.1 1.0 2.1 2 1 0 2 2 2 0 AAA domain DUF4346 PF14251.6 gi|242399417|ref|YP_002994842.1| - 4.5e-05 23.5 0.1 0.00026 21.0 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|242399417|ref|YP_002994842.1| - 0.0001 22.1 0.0 0.00022 21.0 0.0 1.6 1 0 0 1 1 1 1 Pterin binding enzyme Radical_SAM PF04055.21 gi|242399417|ref|YP_002994842.1| - 0.0051 17.2 0.4 0.33 11.3 0.0 2.8 2 1 1 3 3 3 1 Radical SAM superfamily DUF4830 PF16112.5 gi|242399417|ref|YP_002994842.1| - 0.03 14.8 0.0 0.092 13.2 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4830) DUF3216 PF11505.8 gi|242399418|ref|YP_002994843.1| - 2.3e-27 95.0 2.6 2.6e-27 94.9 2.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3216) TatD_DNase PF01026.21 gi|242399419|ref|YP_002994844.1| - 2e-54 184.7 0.0 2.3e-54 184.5 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|242399419|ref|YP_002994844.1| - 0.00012 21.5 0.2 0.00049 19.5 0.2 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_2 PF04909.14 gi|242399419|ref|YP_002994844.1| - 0.0038 17.1 0.1 0.42 10.3 0.0 2.8 1 1 1 3 3 3 2 Amidohydrolase MJ1316 PF04457.12 gi|242399420|ref|YP_002994845.1| - 2.2e-14 53.9 0.4 2.4e-14 53.8 0.4 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain Lactamase_B PF00753.27 gi|242399421|ref|YP_002994846.1| - 9.5e-29 100.8 0.3 1.7e-28 100.0 0.3 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|242399421|ref|YP_002994846.1| - 1.7e-06 27.7 0.0 2.1e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain GSP_synth PF03738.14 gi|242399422|ref|YP_002994847.1| - 0.085 12.0 0.0 0.085 12.0 0.0 1.0 1 0 0 1 1 1 0 Glutathionylspermidine synthase preATP-grasp GDA1_CD39 PF01150.17 gi|242399422|ref|YP_002994847.1| - 0.17 10.5 0.0 0.17 10.5 0.0 1.0 1 0 0 1 1 1 0 GDA1/CD39 (nucleoside phosphatase) family DUF5122 PF17164.4 gi|242399423|ref|YP_002994848.1| - 1e-20 73.7 71.3 0.0099 16.2 0.5 13.4 13 0 0 13 13 13 9 Domain of unknown function (DUF5122) beta-propeller NHL PF01436.21 gi|242399423|ref|YP_002994848.1| - 6.2e-07 29.1 29.2 4 7.7 0.1 10.4 10 0 0 10 10 10 4 NHL repeat DUF2103 PF09876.9 gi|242399423|ref|YP_002994848.1| - 8.1e-05 22.5 0.0 32 4.6 0.0 7.2 6 1 3 9 9 9 0 Predicted metal-binding protein (DUF2103) RHS PF03527.14 gi|242399423|ref|YP_002994848.1| - 0.0001 22.0 32.6 1.5 8.7 0.3 10.8 11 0 0 11 11 10 1 RHS protein RCC1_2 PF13540.6 gi|242399423|ref|YP_002994848.1| - 0.00049 19.8 2.0 6.9 6.6 0.0 5.2 5 0 0 5 5 5 2 Regulator of chromosome condensation (RCC1) repeat PQQ PF01011.21 gi|242399423|ref|YP_002994848.1| - 0.0063 16.4 43.5 4.8 7.3 0.1 12.0 12 0 0 12 12 12 3 PQQ enzyme repeat Peptidase_S24 PF00717.23 gi|242399423|ref|YP_002994848.1| - 0.0081 16.1 3.8 0.48 10.4 0.0 5.4 7 2 0 7 7 7 1 Peptidase S24-like Laminin_II PF06009.12 gi|242399423|ref|YP_002994848.1| - 0.0095 16.0 1.5 1.8 8.6 0.2 2.3 2 0 0 2 2 2 2 Laminin Domain II Laminin_G_2 PF02210.24 gi|242399423|ref|YP_002994848.1| - 0.022 15.3 0.1 25 5.5 0.0 4.9 3 1 2 5 5 5 0 Laminin G domain Usp PF00582.26 gi|242399423|ref|YP_002994848.1| - 0.056 13.9 0.0 77 3.8 0.0 4.2 4 0 0 4 4 4 0 Universal stress protein family Tox-HDC PF15656.6 gi|242399423|ref|YP_002994848.1| - 0.06 13.5 3.8 13 6.0 0.1 5.3 4 1 1 5 5 5 0 Toxin with a H, D/N and C signature WD40 PF00400.32 gi|242399423|ref|YP_002994848.1| - 0.15 12.9 10.3 13 6.9 0.0 7.6 9 1 1 10 10 8 0 WD domain, G-beta repeat DUF1508 PF07411.12 gi|242399423|ref|YP_002994848.1| - 0.36 10.7 4.2 63 3.5 0.0 5.6 5 0 0 5 5 5 0 Domain of unknown function (DUF1508) Flavi_NS2B PF01002.19 gi|242399423|ref|YP_002994848.1| - 2 8.3 10.4 36 4.2 0.1 5.0 5 1 1 6 6 6 0 Flavivirus non-structural protein NS2B Rib PF08428.10 gi|242399425|ref|YP_002994850.1| - 0.11 12.4 0.0 1.1 9.3 0.0 2.6 2 1 1 3 3 3 0 Rib/alpha-like repeat DUF1015 PF06245.11 gi|242399426|ref|YP_002994851.1| - 0.18 10.6 0.0 0.26 10.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) Peptidase_M20 PF01546.28 gi|242399428|ref|YP_002994853.1| - 8.4e-26 91.0 0.1 1.1e-25 90.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|242399428|ref|YP_002994853.1| - 9.8e-09 34.6 0.0 0.00013 21.1 0.0 2.1 2 0 0 2 2 2 2 M42 glutamyl aminopeptidase M20_dimer PF07687.14 gi|242399428|ref|YP_002994853.1| - 2.3e-08 33.9 0.0 3.3e-07 30.2 0.0 2.3 1 1 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|242399428|ref|YP_002994853.1| - 2.4e-07 30.6 0.0 3.6e-06 26.8 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 Abhydrolase_1 PF00561.20 gi|242399429|ref|YP_002994854.1| - 1.7e-24 86.9 0.0 9.1e-24 84.5 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|242399429|ref|YP_002994854.1| - 3.9e-23 83.2 0.0 4.6e-23 83.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|242399429|ref|YP_002994854.1| - 3.6e-15 55.9 0.0 1.4e-14 54.0 0.0 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|242399429|ref|YP_002994854.1| - 2e-07 30.0 0.0 4.4e-07 28.9 0.0 1.4 1 1 0 1 1 1 1 Ndr family Ser_hydrolase PF06821.13 gi|242399429|ref|YP_002994854.1| - 2.2e-06 27.6 0.0 0.0039 17.1 0.0 2.3 2 0 0 2 2 2 2 Serine hydrolase Abhydrolase_2 PF02230.16 gi|242399429|ref|YP_002994854.1| - 4.9e-06 26.5 0.2 0.0022 17.9 0.0 2.9 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.10 gi|242399429|ref|YP_002994854.1| - 0.00036 20.6 0.0 0.00075 19.6 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_5 PF12695.7 gi|242399429|ref|YP_002994854.1| - 0.00073 19.3 0.0 0.029 14.1 0.0 2.1 2 0 0 2 2 2 1 Alpha/beta hydrolase family FSH1 PF03959.13 gi|242399429|ref|YP_002994854.1| - 0.0023 17.6 0.5 0.018 14.7 0.1 2.5 2 1 0 2 2 2 1 Serine hydrolase (FSH1) LIDHydrolase PF10230.9 gi|242399429|ref|YP_002994854.1| - 0.0078 15.8 0.0 0.022 14.3 0.0 1.7 2 0 0 2 2 2 1 Lipid-droplet associated hydrolase DUF3530 PF12048.8 gi|242399429|ref|YP_002994854.1| - 0.0092 15.4 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3530) Peptidase_S9 PF00326.21 gi|242399429|ref|YP_002994854.1| - 0.013 15.0 0.0 0.62 9.5 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family Esterase PF00756.20 gi|242399429|ref|YP_002994854.1| - 0.014 15.1 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Lipase_3 PF01764.25 gi|242399429|ref|YP_002994854.1| - 0.03 14.2 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) Abhydrolase_3 PF07859.13 gi|242399429|ref|YP_002994854.1| - 0.038 13.8 0.0 0.055 13.3 0.0 1.2 1 0 0 1 1 1 0 alpha/beta hydrolase fold DUF915 PF06028.11 gi|242399429|ref|YP_002994854.1| - 0.16 11.3 0.0 2 7.7 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) DEAD PF00270.29 gi|242399430|ref|YP_002994855.1| - 8.2e-31 107.1 0.0 7.8e-29 100.7 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|242399430|ref|YP_002994855.1| - 4.2e-19 68.9 0.0 1.4e-18 67.2 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|242399430|ref|YP_002994855.1| - 3.8e-18 66.0 1.7 4.4e-17 62.5 0.8 2.6 2 1 0 2 2 2 1 DEAD/H associated ResIII PF04851.15 gi|242399430|ref|YP_002994855.1| - 1.6e-07 31.5 0.0 1.4e-06 28.4 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit zinc_ribbon_10 PF10058.9 gi|242399430|ref|YP_002994855.1| - 0.011 15.4 0.7 0.021 14.5 0.2 1.7 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein AAA_25 PF13481.6 gi|242399430|ref|YP_002994855.1| - 0.022 14.3 0.3 0.092 12.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|242399430|ref|YP_002994855.1| - 0.057 13.8 0.0 1 9.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain HypA PF01155.19 gi|242399430|ref|YP_002994855.1| - 0.068 13.2 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_30 PF13604.6 gi|242399430|ref|YP_002994855.1| - 0.17 11.6 0.0 0.4 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Fe-ADH PF00465.19 gi|242399431|ref|YP_002994856.1| - 8.3e-92 307.8 0.0 9.4e-92 307.6 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|242399431|ref|YP_002994856.1| - 4.4e-12 46.2 0.1 3.7e-07 30.1 0.0 2.1 1 1 1 2 2 2 2 Iron-containing alcohol dehydrogenase DUF1638 PF07796.11 gi|242399431|ref|YP_002994856.1| - 0.039 14.0 0.0 0.35 10.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1638) IF-2B PF01008.17 gi|242399432|ref|YP_002994857.1| - 3.4e-82 275.9 0.0 4.1e-82 275.6 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family DEAD PF00270.29 gi|242399432|ref|YP_002994857.1| - 0.2 11.4 0.1 0.47 10.2 0.1 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase DUF737 PF05300.11 gi|242399432|ref|YP_002994857.1| - 0.21 11.9 0.1 0.32 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF737) NTPase_1 PF03266.15 gi|242399433|ref|YP_002994858.1| - 9e-57 191.6 3.5 1e-56 191.5 3.5 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|242399433|ref|YP_002994858.1| - 5.5e-09 35.8 0.1 1.7e-08 34.2 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA PF00004.29 gi|242399433|ref|YP_002994858.1| - 3.7e-07 30.6 0.8 6.9e-07 29.8 0.8 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|242399433|ref|YP_002994858.1| - 4.5e-06 27.2 0.7 1.2e-05 25.9 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|242399433|ref|YP_002994858.1| - 1.4e-05 25.4 0.1 4.8e-05 23.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|242399433|ref|YP_002994858.1| - 1.8e-05 24.5 1.1 0.046 13.3 0.2 2.1 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|242399433|ref|YP_002994858.1| - 0.00014 21.6 0.5 0.00036 20.3 0.5 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|242399433|ref|YP_002994858.1| - 0.00015 21.6 1.6 0.00027 20.7 1.6 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|242399433|ref|YP_002994858.1| - 0.00028 21.3 3.0 0.00094 19.6 1.9 2.2 1 1 1 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|242399433|ref|YP_002994858.1| - 0.00034 20.7 2.3 0.0038 17.3 2.3 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase KdpD PF02702.17 gi|242399433|ref|YP_002994858.1| - 0.00096 18.7 0.8 0.0021 17.6 0.8 1.7 1 1 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain APS_kinase PF01583.20 gi|242399433|ref|YP_002994858.1| - 0.001 19.0 0.1 0.0026 17.7 0.1 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_19 PF13245.6 gi|242399433|ref|YP_002994858.1| - 0.0013 19.0 1.3 0.012 15.9 1.0 2.3 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|242399433|ref|YP_002994858.1| - 0.0015 17.6 1.1 0.0022 17.0 0.3 1.8 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|242399433|ref|YP_002994858.1| - 0.0016 18.3 0.9 0.0055 16.6 0.4 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|242399433|ref|YP_002994858.1| - 0.0017 18.8 0.1 0.005 17.2 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|242399433|ref|YP_002994858.1| - 0.0017 18.1 0.8 0.48 10.2 0.1 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Viral_helicase1 PF01443.18 gi|242399433|ref|YP_002994858.1| - 0.0031 17.3 0.2 0.056 13.2 0.1 2.1 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|242399433|ref|YP_002994858.1| - 0.0034 17.4 2.7 0.19 11.8 0.2 2.4 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|242399433|ref|YP_002994858.1| - 0.0037 17.2 0.8 2.6 8.0 0.1 2.3 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) DUF2075 PF09848.9 gi|242399433|ref|YP_002994858.1| - 0.0048 16.2 1.7 0.02 14.1 1.6 1.8 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) cobW PF02492.19 gi|242399433|ref|YP_002994858.1| - 0.005 16.5 2.3 0.05 13.2 2.2 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|242399433|ref|YP_002994858.1| - 0.011 15.7 2.1 0.024 14.6 2.1 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea KTI12 PF08433.10 gi|242399433|ref|YP_002994858.1| - 0.011 15.2 2.1 0.16 11.4 0.1 2.3 2 1 0 2 2 2 0 Chromatin associated protein KTI12 Bac_DnaA PF00308.18 gi|242399433|ref|YP_002994858.1| - 0.013 15.4 0.7 0.095 12.5 0.1 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein IstB_IS21 PF01695.17 gi|242399433|ref|YP_002994858.1| - 0.014 15.1 0.1 3.5 7.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF1611 PF07755.11 gi|242399433|ref|YP_002994858.1| - 0.022 14.0 0.3 0.09 12.0 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain NB-ARC PF00931.22 gi|242399433|ref|YP_002994858.1| - 0.024 13.8 0.7 0.045 12.9 0.2 1.7 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.22 gi|242399433|ref|YP_002994858.1| - 0.024 15.0 0.1 1.4 9.3 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_33 PF13671.6 gi|242399433|ref|YP_002994858.1| - 0.037 14.2 0.1 0.051 13.7 0.1 1.4 1 1 0 1 1 1 0 AAA domain ADK PF00406.22 gi|242399433|ref|YP_002994858.1| - 0.04 14.0 0.8 0.084 13.0 0.1 1.8 2 1 0 2 2 2 0 Adenylate kinase Arf PF00025.21 gi|242399433|ref|YP_002994858.1| - 0.04 13.4 0.2 0.061 12.8 0.2 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family DnaB_C PF03796.15 gi|242399433|ref|YP_002994858.1| - 0.042 13.2 0.1 3.9 6.7 0.0 2.1 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_28 PF13521.6 gi|242399433|ref|YP_002994858.1| - 0.053 13.8 0.6 0.16 12.2 0.6 1.9 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|242399433|ref|YP_002994858.1| - 0.054 13.5 0.5 4.6 7.2 0.2 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|242399433|ref|YP_002994858.1| - 0.083 12.8 0.3 0.28 11.1 0.2 1.8 2 0 0 2 2 2 0 NACHT domain AAA_11 PF13086.6 gi|242399433|ref|YP_002994858.1| - 0.12 12.1 4.2 0.6 9.9 0.1 2.7 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|242399433|ref|YP_002994858.1| - 0.42 10.2 1.9 6.8 6.2 0.0 2.5 2 1 1 3 3 3 0 AAA domain Thymidylate_kin PF02223.17 gi|242399433|ref|YP_002994858.1| - 0.63 9.7 4.6 1.3 8.7 0.6 2.3 2 1 0 2 2 2 0 Thymidylate kinase ABC_tran PF00005.27 gi|242399434|ref|YP_002994859.1| - 8.7e-30 104.0 0.0 1.4e-29 103.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242399434|ref|YP_002994859.1| - 3.7e-09 36.8 0.2 8.5e-06 25.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|242399434|ref|YP_002994859.1| - 1.1e-08 34.8 0.6 0.0012 18.4 0.1 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|242399434|ref|YP_002994859.1| - 9.4e-06 26.3 0.0 1.3e-05 25.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|242399434|ref|YP_002994859.1| - 4.5e-05 23.5 0.0 0.0001 22.3 0.0 1.7 2 0 0 2 2 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|242399434|ref|YP_002994859.1| - 4.5e-05 23.1 0.1 8.8e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|242399434|ref|YP_002994859.1| - 0.00022 21.5 0.0 0.00048 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|242399434|ref|YP_002994859.1| - 0.0003 20.6 0.0 0.00094 19.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|242399434|ref|YP_002994859.1| - 0.00036 19.5 0.0 0.32 9.8 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|242399434|ref|YP_002994859.1| - 0.00047 19.8 0.0 0.0008 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|242399434|ref|YP_002994859.1| - 0.00053 19.8 0.0 0.0014 18.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|242399434|ref|YP_002994859.1| - 0.00067 19.6 0.1 0.0015 18.5 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase NTPase_1 PF03266.15 gi|242399434|ref|YP_002994859.1| - 0.00081 19.3 0.2 0.11 12.4 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_33 PF13671.6 gi|242399434|ref|YP_002994859.1| - 0.0034 17.6 0.1 0.024 14.8 0.1 2.4 1 1 0 1 1 1 1 AAA domain PIF1 PF05970.14 gi|242399434|ref|YP_002994859.1| - 0.0055 15.9 0.0 0.0085 15.3 0.0 1.2 1 0 0 1 1 1 1 PIF1-like helicase AAA_16 PF13191.6 gi|242399434|ref|YP_002994859.1| - 0.016 15.6 0.0 0.022 15.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|242399434|ref|YP_002994859.1| - 0.021 14.2 0.0 0.039 13.3 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.23 gi|242399434|ref|YP_002994859.1| - 0.035 14.2 0.4 0.077 13.1 0.1 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|242399434|ref|YP_002994859.1| - 0.037 14.1 0.0 0.26 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|242399434|ref|YP_002994859.1| - 0.044 13.7 0.1 0.095 12.6 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|242399434|ref|YP_002994859.1| - 0.045 13.7 0.1 0.098 12.6 0.1 1.6 1 0 0 1 1 1 0 NACHT domain Thioredoxin_13 PF18401.1 gi|242399434|ref|YP_002994859.1| - 0.053 13.4 0.1 0.11 12.5 0.1 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain AAA PF00004.29 gi|242399434|ref|YP_002994859.1| - 0.067 13.6 0.2 0.18 12.2 0.1 1.9 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|242399434|ref|YP_002994859.1| - 0.075 12.9 0.0 0.096 12.6 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea MeaB PF03308.16 gi|242399434|ref|YP_002994859.1| - 0.097 11.6 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AFG1_ATPase PF03969.16 gi|242399434|ref|YP_002994859.1| - 0.099 11.5 0.1 0.34 9.7 0.0 1.7 2 0 0 2 2 2 0 AFG1-like ATPase AAA_19 PF13245.6 gi|242399434|ref|YP_002994859.1| - 0.13 12.5 0.2 0.29 11.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|242399435|ref|YP_002994860.1| - 3.1e-90 302.4 28.6 3.8e-90 302.1 28.6 1.0 1 0 0 1 1 1 1 FecCD transport family Phage_holin_3_1 PF05106.12 gi|242399435|ref|YP_002994860.1| - 3.3 8.2 7.6 3.9e+02 1.5 7.6 2.7 1 1 0 1 1 1 0 Phage holin family (Lysis protein S) Met_10 PF02475.16 gi|242399436|ref|YP_002994861.1| - 8.6e-71 237.8 1.3 1.3e-70 237.2 1.3 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|242399436|ref|YP_002994861.1| - 8.5e-19 67.2 1.5 2.8e-18 65.6 1.5 1.9 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 gi|242399436|ref|YP_002994861.1| - 5.6e-07 29.2 0.0 1.4e-06 27.9 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|242399436|ref|YP_002994861.1| - 7.5e-06 25.6 0.0 1.6e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|242399436|ref|YP_002994861.1| - 4.8e-05 23.0 0.0 7.5e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.16 gi|242399436|ref|YP_002994861.1| - 0.00012 21.3 0.0 0.00019 20.7 0.0 1.4 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltr_RsmB-F PF01189.17 gi|242399436|ref|YP_002994861.1| - 0.00025 20.7 0.0 0.0093 15.6 0.0 2.3 1 1 1 2 2 2 2 16S rRNA methyltransferase RsmB/F Methyltransf_25 PF13649.6 gi|242399436|ref|YP_002994861.1| - 0.00052 20.7 0.0 0.0017 19.0 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|242399436|ref|YP_002994861.1| - 0.0044 16.8 0.0 0.053 13.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|242399436|ref|YP_002994861.1| - 0.05 12.6 0.0 0.092 11.7 0.0 1.4 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase NTP_transf_2 PF01909.23 gi|242399437|ref|YP_002994862.1| - 4.3e-08 33.3 2.2 9.1e-08 32.3 2.2 1.7 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|242399437|ref|YP_002994862.1| - 4.2e-05 23.6 0.7 9.3e-05 22.4 0.3 1.8 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase FANC_SAP PF18081.1 gi|242399437|ref|YP_002994862.1| - 0.032 14.4 0.0 0.061 13.5 0.0 1.4 1 0 0 1 1 1 0 Fanconi anemia-associated nuclease SAP domain DUF192 PF02643.15 gi|242399438|ref|YP_002994863.1| - 3.4e-18 65.6 0.0 4.3e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DHODB_Fe-S_bind PF10418.9 gi|242399439|ref|YP_002994864.1| - 2.3e-12 46.5 1.4 3.7e-12 45.8 1.4 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.6 gi|242399439|ref|YP_002994864.1| - 0.037 14.0 0.1 0.092 12.8 0.1 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain TPR_6 PF13174.6 gi|242399439|ref|YP_002994864.1| - 0.09 13.5 0.1 0.3 11.8 0.1 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat Alk_phosphatase PF00245.20 gi|242399439|ref|YP_002994864.1| - 0.11 11.4 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Alkaline phosphatase Pyr_redox_2 PF07992.14 gi|242399440|ref|YP_002994865.1| - 1.8e-40 139.0 2.4 2.7e-40 138.5 2.4 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 gi|242399440|ref|YP_002994865.1| - 1.5e-38 131.0 0.7 2.4e-38 130.4 0.7 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox PF00070.27 gi|242399440|ref|YP_002994865.1| - 1.9e-13 50.7 4.6 3.6e-06 27.4 0.4 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|242399440|ref|YP_002994865.1| - 3.5e-12 46.2 4.1 1.6e-08 34.2 0.2 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|242399440|ref|YP_002994865.1| - 2.5e-08 34.0 1.0 7.1e-08 32.6 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|242399440|ref|YP_002994865.1| - 3.6e-08 33.0 0.7 0.0042 16.4 0.1 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|242399440|ref|YP_002994865.1| - 1.1e-06 28.1 1.2 2.4e-06 27.0 0.1 1.9 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|242399440|ref|YP_002994865.1| - 1.9e-06 27.5 6.9 0.00023 20.6 0.1 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|242399440|ref|YP_002994865.1| - 2.3e-06 26.9 2.9 0.00046 19.4 0.1 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|242399440|ref|YP_002994865.1| - 1.1e-05 24.3 4.8 7.8e-05 21.5 0.9 2.5 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|242399440|ref|YP_002994865.1| - 3.5e-05 23.2 1.0 4.8e-05 22.8 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|242399440|ref|YP_002994865.1| - 7.4e-05 22.0 0.5 7.4e-05 22.0 0.5 2.7 3 0 0 3 3 3 1 FAD binding domain NAD_binding_7 PF13241.6 gi|242399440|ref|YP_002994865.1| - 0.00012 22.4 1.2 0.15 12.5 0.3 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|242399440|ref|YP_002994865.1| - 0.00015 21.8 0.7 2 8.5 0.0 3.8 4 0 0 4 4 4 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|242399440|ref|YP_002994865.1| - 0.00031 20.1 1.0 0.25 10.7 0.1 2.8 3 1 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FMO-like PF00743.19 gi|242399440|ref|YP_002994865.1| - 0.00063 18.3 0.0 0.0045 15.5 0.0 1.9 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like DAO PF01266.24 gi|242399440|ref|YP_002994865.1| - 0.00085 19.0 3.0 0.0068 16.0 0.2 3.1 4 0 0 4 4 4 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|242399440|ref|YP_002994865.1| - 0.00096 18.5 0.4 0.0068 15.7 0.0 2.3 2 1 1 3 3 3 1 Flavin containing amine oxidoreductase XdhC_C PF13478.6 gi|242399440|ref|YP_002994865.1| - 0.0015 19.0 0.1 1.4 9.4 0.0 2.5 3 0 0 3 3 2 1 XdhC Rossmann domain F420_oxidored PF03807.17 gi|242399440|ref|YP_002994865.1| - 0.0033 18.0 4.1 0.41 11.3 1.2 3.8 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent PALP PF00291.25 gi|242399440|ref|YP_002994865.1| - 0.015 14.7 0.0 2.6 7.4 0.0 2.4 2 1 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme Lycopene_cycl PF05834.12 gi|242399440|ref|YP_002994865.1| - 0.028 13.5 0.2 0.06 12.4 0.2 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|242399440|ref|YP_002994865.1| - 0.058 13.3 0.9 0.83 9.5 0.1 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|242399440|ref|YP_002994865.1| - 0.089 12.4 0.7 13 5.3 0.0 2.7 3 0 0 3 3 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_9 PF13454.6 gi|242399440|ref|YP_002994865.1| - 0.26 11.3 4.4 0.51 10.3 0.2 2.8 4 0 0 4 4 3 0 FAD-NAD(P)-binding Fer4_10 PF13237.6 gi|242399440|ref|YP_002994865.1| - 1.3 9.2 6.6 3.1 8.0 6.6 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR PF01558.18 gi|242399441|ref|YP_002994866.1| - 1.2e-35 123.2 0.0 1.4e-35 123.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase GTP-bdg_N PF13167.6 gi|242399441|ref|YP_002994866.1| - 0.093 13.4 0.0 0.16 12.6 0.0 1.4 1 0 0 1 1 1 0 GTP-binding GTPase N-terminal CDC37_C PF08564.10 gi|242399441|ref|YP_002994866.1| - 0.1 12.8 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Cdc37 C terminal domain TPP_enzyme_C PF02775.21 gi|242399442|ref|YP_002994867.1| - 2.4e-37 128.1 0.2 3.5e-37 127.5 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 gi|242399442|ref|YP_002994867.1| - 0.03 13.1 0.1 0.046 12.5 0.1 1.2 1 0 0 1 1 1 0 XFP N-terminal domain POR_N PF01855.19 gi|242399443|ref|YP_002994868.1| - 1.1e-79 267.4 0.3 1.5e-79 267.0 0.3 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|242399443|ref|YP_002994868.1| - 3.1e-22 78.8 0.2 5.3e-21 74.9 0.2 2.3 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|242399443|ref|YP_002994868.1| - 1.4e-09 37.9 0.0 2.9e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|242399443|ref|YP_002994868.1| - 1.2e-05 25.0 0.3 1.8e-05 24.4 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR PF01558.18 gi|242399444|ref|YP_002994869.1| - 6.4e-38 130.6 0.5 1e-37 129.9 0.5 1.3 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|242399445|ref|YP_002994870.1| - 2.4e-37 128.1 0.1 3.4e-37 127.6 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|242399446|ref|YP_002994871.1| - 3e-75 252.9 0.0 3.8e-75 252.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|242399446|ref|YP_002994871.1| - 4.5e-19 68.6 0.3 7.2e-19 68.0 0.3 1.3 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|242399446|ref|YP_002994871.1| - 2.1e-05 24.4 0.1 4.5e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|242399447|ref|YP_002994872.1| - 8e-11 41.3 11.2 3.4e-05 23.5 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|242399447|ref|YP_002994872.1| - 2.2e-10 40.9 4.9 3.5e-10 40.3 4.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|242399447|ref|YP_002994872.1| - 5.1e-08 32.9 5.8 0.001 19.2 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|242399447|ref|YP_002994872.1| - 3.1e-07 30.5 15.7 6.6e-05 23.0 9.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242399447|ref|YP_002994872.1| - 2e-06 27.6 10.8 0.0031 17.5 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|242399447|ref|YP_002994872.1| - 5.9e-06 26.4 0.2 7e-06 26.1 0.2 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_6 PF12837.7 gi|242399447|ref|YP_002994872.1| - 8.2e-06 25.7 10.3 0.0074 16.3 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|242399447|ref|YP_002994872.1| - 8.3e-06 26.3 5.3 0.049 14.2 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|242399447|ref|YP_002994872.1| - 1.9e-05 25.1 8.1 0.0085 16.6 10.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|242399447|ref|YP_002994872.1| - 2.2e-05 25.3 7.7 0.011 16.6 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|242399447|ref|YP_002994872.1| - 8.9e-05 22.5 9.4 0.00097 19.2 9.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|242399447|ref|YP_002994872.1| - 0.00014 22.6 3.4 0.024 15.5 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|242399447|ref|YP_002994872.1| - 0.00091 19.9 6.4 0.015 16.0 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|242399447|ref|YP_002994872.1| - 0.0048 17.3 10.0 0.06 13.9 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain DUF3343 PF11823.8 gi|242399447|ref|YP_002994872.1| - 0.0072 15.8 0.1 0.01 15.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3343) Fer4_8 PF13183.6 gi|242399447|ref|YP_002994872.1| - 0.016 15.6 10.1 0.88 10.1 1.2 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|242399447|ref|YP_002994872.1| - 0.13 13.3 14.4 0.7 11.0 3.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|242399447|ref|YP_002994872.1| - 3.3 7.9 8.3 9.7 6.4 1.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|242399448|ref|YP_002994873.1| - 4.7e-08 33.6 0.1 2e-07 31.6 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily DUF3834 PF12916.7 gi|242399448|ref|YP_002994873.1| - 0.038 13.2 0.2 0.069 12.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) DUF996 PF06195.13 gi|242399449|ref|YP_002994874.1| - 1.7e-27 96.4 14.5 2.5e-27 95.8 14.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF996) DUF2975 PF11188.8 gi|242399449|ref|YP_002994874.1| - 0.0045 16.9 13.9 0.24 11.3 6.0 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF2975) DUF373 PF04123.13 gi|242399449|ref|YP_002994874.1| - 0.011 15.2 9.9 0.015 14.8 9.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF1418 PF07214.12 gi|242399449|ref|YP_002994874.1| - 0.068 13.0 5.5 2 8.3 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1418) MpPF26 PF07666.11 gi|242399449|ref|YP_002994874.1| - 0.68 10.1 10.7 0.053 13.6 2.1 2.1 1 1 1 2 2 2 0 M penetrans paralogue family 26 DUF3522 PF12036.8 gi|242399449|ref|YP_002994874.1| - 0.76 10.0 5.3 0.34 11.2 0.4 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3522) DHHC PF01529.20 gi|242399449|ref|YP_002994874.1| - 0.82 9.8 6.8 1.7 8.7 0.9 2.1 2 0 0 2 2 2 0 DHHC palmitoyltransferase NicO PF03824.16 gi|242399449|ref|YP_002994874.1| - 1.4 8.2 9.5 0.033 13.5 1.2 2.3 1 1 2 3 3 3 0 High-affinity nickel-transport protein DUF973 PF06157.11 gi|242399449|ref|YP_002994874.1| - 1.5 7.8 15.9 0.35 9.9 10.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF973) MerC PF03203.14 gi|242399449|ref|YP_002994874.1| - 3.1 8.3 8.1 2.3 8.7 0.4 2.8 1 1 1 2 2 2 0 MerC mercury resistance protein DUF1461 PF07314.11 gi|242399449|ref|YP_002994874.1| - 4.7 7.1 10.0 3.2 7.6 1.9 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1461) DUF3262 PF11660.8 gi|242399449|ref|YP_002994874.1| - 5.8 7.4 10.3 10 6.6 0.6 2.7 2 2 0 2 2 2 0 Protein of unknown function (DUF3262) FA_desaturase PF00487.24 gi|242399449|ref|YP_002994874.1| - 9.1 6.0 5.8 4.6 7.0 3.3 1.7 1 1 1 2 2 2 0 Fatty acid desaturase SurE PF01975.17 gi|242399450|ref|YP_002994875.1| - 3.5e-54 183.5 0.0 4.4e-54 183.2 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE CBS PF00571.28 gi|242399451|ref|YP_002994876.1| - 2.9e-37 126.9 10.8 2.9e-10 40.4 0.5 4.2 4 0 0 4 4 4 4 CBS domain sCache_3_2 PF17203.4 gi|242399451|ref|YP_002994876.1| - 0.019 15.1 0.4 8.7 6.5 0.0 3.4 3 1 1 4 4 4 0 Single cache domain 3 PRC PF05239.16 gi|242399451|ref|YP_002994876.1| - 0.022 14.8 5.0 2.6 8.2 0.1 3.6 4 0 0 4 4 4 0 PRC-barrel domain Homoserine_dh PF00742.19 gi|242399452|ref|YP_002994877.1| - 5e-52 176.3 0.1 7.3e-52 175.8 0.1 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|242399452|ref|YP_002994877.1| - 7.7e-09 36.2 0.0 2.1e-08 34.9 0.0 1.8 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|242399452|ref|YP_002994877.1| - 0.00037 20.3 0.2 0.0028 17.4 0.1 2.4 2 2 1 3 3 3 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|242399452|ref|YP_002994877.1| - 0.089 13.1 0.1 0.17 12.1 0.1 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ASCH PF04266.14 gi|242399453|ref|YP_002994878.1| - 0.00021 21.8 0.0 0.00031 21.3 0.0 1.4 1 0 0 1 1 1 1 ASCH domain zf-ZPR1 PF03367.13 gi|242399454|ref|YP_002994879.1| - 1.3e-40 138.9 0.1 1.5e-40 138.6 0.1 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|242399454|ref|YP_002994879.1| - 4.6e-05 23.7 0.1 9.8e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|242399454|ref|YP_002994879.1| - 0.031 13.8 1.5 0.17 11.4 1.5 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.12 gi|242399454|ref|YP_002994879.1| - 0.04 14.2 3.2 0.43 10.9 3.2 2.1 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase PhnA_Zn_Ribbon PF08274.12 gi|242399454|ref|YP_002994879.1| - 0.052 13.5 0.2 0.093 12.7 0.2 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Rubredoxin_2 PF18073.1 gi|242399454|ref|YP_002994879.1| - 0.069 12.9 0.2 14 5.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Cobl PF09469.10 gi|242399454|ref|YP_002994879.1| - 0.076 13.3 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 Cordon-bleu ubiquitin-like domain SepF PF04472.12 gi|242399455|ref|YP_002994880.1| - 6.3e-15 55.2 0.4 8.3e-15 54.8 0.4 1.2 1 0 0 1 1 1 1 Cell division protein SepF CBFD_NFYB_HMF PF00808.23 gi|242399456|ref|YP_002994881.1| - 1.1e-20 73.7 0.7 1.2e-20 73.6 0.7 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|242399456|ref|YP_002994881.1| - 3.8e-10 40.2 0.3 4.1e-10 40.1 0.3 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|242399456|ref|YP_002994881.1| - 2.9e-07 30.6 0.1 2.9e-07 30.6 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|242399456|ref|YP_002994881.1| - 5e-07 30.0 0.1 5.2e-07 30.0 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein TAF PF02969.17 gi|242399456|ref|YP_002994881.1| - 1.3e-06 28.5 0.3 1.3e-06 28.4 0.3 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.15 gi|242399456|ref|YP_002994881.1| - 2.4e-06 27.6 0.0 2.7e-06 27.5 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.13 gi|242399456|ref|YP_002994881.1| - 3e-05 24.4 0.1 3.4e-05 24.2 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A Bromo_TP PF07524.13 gi|242399456|ref|YP_002994881.1| - 0.00017 21.5 0.0 0.00019 21.4 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID-18kDa PF02269.16 gi|242399456|ref|YP_002994881.1| - 0.00058 19.8 0.0 0.00062 19.7 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit CENP-X PF09415.10 gi|242399456|ref|YP_002994881.1| - 0.0043 17.3 1.2 0.0052 17.1 1.2 1.1 1 0 0 1 1 1 1 CENP-S associating Centromere protein X Radical_SAM PF04055.21 gi|242399457|ref|YP_002994882.1| - 7.5e-27 94.7 0.4 1.4e-25 90.6 0.0 2.6 2 1 1 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|242399457|ref|YP_002994882.1| - 1.1e-09 38.3 0.0 2.3e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain Metallophos_2 PF12850.7 gi|242399458|ref|YP_002994883.1| - 1.5e-32 113.1 0.0 1.8e-32 112.8 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|242399458|ref|YP_002994883.1| - 2.1e-15 57.8 0.1 2.7e-15 57.4 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|242399458|ref|YP_002994883.1| - 0.0023 17.3 0.0 1.8 7.8 0.0 2.5 2 1 1 3 3 3 2 Metallophosphoesterase, calcineurin superfamily NAGLU_N PF12971.7 gi|242399458|ref|YP_002994883.1| - 0.034 13.9 0.0 0.083 12.7 0.0 1.7 1 1 1 2 2 2 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain Cas_Cas6 PF01881.16 gi|242399461|ref|YP_002994886.1| - 2.6e-35 122.1 0.1 3.1e-35 121.9 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas6 ScsC_N PF18312.1 gi|242399462|ref|YP_002994887.1| - 0.14 12.0 0.1 0.53 10.1 0.1 2.0 1 0 0 1 1 1 0 Copper resistance protein ScsC N-terminal domain DevR PF01905.16 gi|242399463|ref|YP_002994888.1| - 2.4e-08 33.4 0.0 7.3e-08 31.8 0.0 1.5 1 1 0 2 2 2 1 CRISPR-associated negative auto-regulator DevR/Csa2 Thiolase_N PF00108.23 gi|242399463|ref|YP_002994888.1| - 0.26 10.6 0.0 0.42 9.9 0.0 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain Cas_Cas5d PF09704.10 gi|242399464|ref|YP_002994889.1| - 0.00029 20.8 0.0 0.00041 20.3 0.0 1.4 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.29 gi|242399465|ref|YP_002994890.1| - 4.7e-10 39.5 0.0 2.4e-09 37.2 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|242399465|ref|YP_002994890.1| - 3.9e-07 30.2 0.3 3.9e-07 30.2 0.3 2.7 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|242399465|ref|YP_002994890.1| - 5e-07 30.0 0.1 1.8e-06 28.3 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain HD PF01966.22 gi|242399465|ref|YP_002994890.1| - 0.00023 21.4 0.1 0.00066 19.9 0.1 1.9 1 0 0 1 1 1 1 HD domain HD_6 PF18019.1 gi|242399465|ref|YP_002994890.1| - 0.036 14.2 0.1 0.075 13.2 0.1 1.5 1 0 0 1 1 1 0 HD domain FixP_N PF14715.6 gi|242399465|ref|YP_002994890.1| - 0.2 11.4 1.4 0.43 10.4 0.5 2.0 2 0 0 2 2 2 0 N-terminal domain of cytochrome oxidase-cbb3, FixP Cas_Cas4 PF01930.17 gi|242399466|ref|YP_002994891.1| - 1.1e-54 185.0 1.6 1.2e-54 184.8 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|242399466|ref|YP_002994891.1| - 0.0004 20.4 0.8 0.0014 18.6 0.4 1.6 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.6 gi|242399466|ref|YP_002994891.1| - 0.011 16.1 0.6 0.018 15.4 0.6 1.4 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily HycI PF01750.18 gi|242399466|ref|YP_002994891.1| - 0.026 14.3 0.3 0.044 13.6 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase maturation protease Cas_Cas1 PF01867.16 gi|242399467|ref|YP_002994892.1| - 2.1e-83 279.8 0.7 2.5e-83 279.5 0.7 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF4041 PF13250.6 gi|242399467|ref|YP_002994892.1| - 0.068 13.1 0.4 2.4 8.1 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4041) PDDEXK_1 PF12705.7 gi|242399468|ref|YP_002994893.1| - 1e-07 32.1 0.0 2.1e-07 31.1 0.0 1.5 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|242399468|ref|YP_002994893.1| - 0.032 14.3 0.0 0.16 12.0 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function DUF83 Dna2 PF08696.11 gi|242399468|ref|YP_002994893.1| - 0.072 12.9 0.0 0.17 11.7 0.0 1.6 2 0 0 2 2 2 0 DNA replication factor Dna2 CRISPR_Cas2 PF09827.9 gi|242399469|ref|YP_002994894.1| - 2.4e-23 82.1 1.1 2.7e-23 81.9 1.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 DUF1040 PF06288.13 gi|242399469|ref|YP_002994894.1| - 0.073 13.5 0.1 0.096 13.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1040) Sua5_yciO_yrdC PF01300.18 gi|242399470|ref|YP_002994895.1| - 9.1e-46 155.6 0.0 1.4e-45 155.0 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|242399470|ref|YP_002994895.1| - 8.7e-32 108.6 19.5 4.3e-16 58.4 3.6 2.4 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|242399470|ref|YP_002994895.1| - 1.4e-28 99.6 0.2 3.1e-28 98.4 0.2 1.5 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|242399470|ref|YP_002994895.1| - 2.8e-26 91.7 0.0 7.2e-25 87.2 0.0 2.7 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|242399470|ref|YP_002994895.1| - 8.3e-06 25.7 0.1 6.2e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|242399470|ref|YP_002994895.1| - 0.00095 18.9 0.1 0.042 13.5 0.0 2.2 2 0 0 2 2 2 1 Carbamoyltransferase N-terminus BcrAD_BadFG PF01869.20 gi|242399470|ref|YP_002994895.1| - 0.027 14.0 0.0 0.063 12.8 0.0 1.6 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|242399470|ref|YP_002994895.1| - 0.11 11.9 0.0 0.53 9.7 0.0 2.0 2 0 0 2 2 2 0 ROK family NMD3 PF04981.13 gi|242399470|ref|YP_002994895.1| - 2.7 7.4 5.1 3.4 7.1 0.2 2.3 1 1 1 2 2 2 0 NMD3 family DUF2933 PF11666.8 gi|242399471|ref|YP_002994896.1| - 0.089 12.8 1.4 0.16 12.0 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2933) Peptidase_S24 PF00717.23 gi|242399473|ref|YP_002994898.1| - 4.7e-07 29.7 0.9 7.3e-07 29.1 0.9 1.4 1 1 0 1 1 1 1 Peptidase S24-like AIRS_C PF02769.22 gi|242399474|ref|YP_002994899.1| - 2.1e-30 105.9 0.8 3.1e-30 105.4 0.8 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|242399474|ref|YP_002994899.1| - 4.9e-17 62.4 0.2 9.9e-17 61.4 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF257 PF03192.13 gi|242399476|ref|YP_002994901.1| - 6.3e-55 186.2 4.9 7.1e-55 186.0 4.9 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 Peptidase_M24 PF00557.24 gi|242399478|ref|YP_002994903.1| - 1.4e-42 145.8 0.0 1.7e-42 145.5 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 ATP-cone PF03477.16 gi|242399478|ref|YP_002994903.1| - 0.0075 16.8 0.2 2.7 8.6 0.1 2.4 2 0 0 2 2 2 2 ATP cone domain TrkH PF02386.16 gi|242399479|ref|YP_002994904.1| - 5.2e-62 209.9 26.2 4.3e-61 206.9 26.2 1.9 1 1 0 1 1 1 1 Cation transport protein ABC_tran PF00005.27 gi|242399480|ref|YP_002994905.1| - 3e-27 95.8 0.0 4.7e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|242399480|ref|YP_002994905.1| - 2.9e-07 30.2 0.5 1.7e-05 24.4 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|242399480|ref|YP_002994905.1| - 6.2e-05 22.5 0.3 0.0055 16.1 0.0 2.8 2 1 1 3 3 3 1 Bacterial TniB protein AAA_21 PF13304.6 gi|242399480|ref|YP_002994905.1| - 0.00034 20.5 6.2 0.0028 17.5 0.4 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|242399480|ref|YP_002994905.1| - 0.00092 19.5 0.5 0.0086 16.4 0.4 2.3 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|242399480|ref|YP_002994905.1| - 0.0067 16.1 0.7 0.013 15.3 0.2 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|242399480|ref|YP_002994905.1| - 0.014 15.8 0.0 0.023 15.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 gi|242399480|ref|YP_002994905.1| - 0.059 12.7 1.1 3.1 7.1 0.1 2.4 2 1 0 2 2 2 0 KaiC NB-ARC PF00931.22 gi|242399480|ref|YP_002994905.1| - 0.092 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.6 gi|242399480|ref|YP_002994905.1| - 0.12 12.6 0.0 2.4 8.4 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|242399480|ref|YP_002994905.1| - 0.13 12.1 0.3 0.4 10.6 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_24 PF13479.6 gi|242399480|ref|YP_002994905.1| - 0.19 11.4 0.2 1.3 8.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|242399480|ref|YP_002994905.1| - 0.2 10.2 0.4 3.1 6.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|242399480|ref|YP_002994905.1| - 0.59 10.2 2.6 1.7 8.7 0.3 2.4 2 1 1 3 3 3 0 Helicase HerA, central domain CYTH PF01928.21 gi|242399481|ref|YP_002994906.1| - 5.3e-31 107.9 4.8 6.2e-31 107.7 4.8 1.0 1 0 0 1 1 1 1 CYTH domain PUB PF09409.10 gi|242399481|ref|YP_002994906.1| - 0.0023 17.8 0.4 0.0077 16.2 0.1 2.2 2 1 0 2 2 2 1 PUB domain Peptidase_M54 PF07998.11 gi|242399482|ref|YP_002994907.1| - 5.9e-30 104.7 0.0 1e-29 104.0 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|242399482|ref|YP_002994907.1| - 0.00068 19.5 0.0 0.00093 19.1 0.0 1.2 1 0 0 1 1 1 1 Matrixin Metallopep PF12044.8 gi|242399482|ref|YP_002994907.1| - 0.004 15.8 0.1 0.005 15.5 0.1 1.1 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_3 PF13582.6 gi|242399482|ref|YP_002994907.1| - 0.013 16.0 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|242399482|ref|YP_002994907.1| - 0.035 13.0 0.1 0.05 12.6 0.1 1.1 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_5 PF13688.6 gi|242399482|ref|YP_002994907.1| - 0.045 13.9 0.0 0.06 13.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M43 PF05572.13 gi|242399482|ref|YP_002994907.1| - 0.13 12.2 0.1 0.19 11.6 0.1 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A DUF86 PF01934.17 gi|242399483|ref|YP_002994908.1| - 2.3e-12 46.8 0.2 3e-12 46.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 UBA_2 PF08587.11 gi|242399483|ref|YP_002994908.1| - 0.0025 17.9 0.5 0.6 10.3 0.0 3.2 2 1 1 3 3 3 1 Ubiquitin associated domain (UBA) CUE PF02845.16 gi|242399483|ref|YP_002994908.1| - 0.0075 16.0 0.2 0.054 13.2 0.0 2.5 3 0 0 3 3 3 1 CUE domain Peptidase_M42 PF05343.14 gi|242399484|ref|YP_002994909.1| - 7.8e-101 336.9 0.7 9.4e-101 336.7 0.7 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|242399484|ref|YP_002994909.1| - 3.8e-08 33.3 0.2 1e-07 31.9 0.2 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|242399484|ref|YP_002994909.1| - 8.3e-06 24.8 0.1 0.00031 19.6 0.0 2.4 2 1 1 3 3 3 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.17 gi|242399484|ref|YP_002994909.1| - 0.0012 18.6 0.2 0.074 12.7 0.0 2.3 2 0 0 2 2 2 2 Peptidase family M28 CarboxypepD_reg PF13620.6 gi|242399485|ref|YP_002994910.1| - 5.6e-08 32.9 5.6 0.0028 17.9 0.2 3.0 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|242399485|ref|YP_002994910.1| - 6.1e-06 26.2 1.1 0.0016 18.4 0.3 3.9 5 0 0 5 5 5 2 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|242399485|ref|YP_002994910.1| - 7.3e-06 26.0 1.0 0.033 14.3 0.1 3.4 2 1 1 3 3 3 2 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|242399485|ref|YP_002994910.1| - 0.00012 22.3 2.7 0.0057 16.9 0.1 3.2 3 1 0 3 3 3 1 Invasin, domain 3 CARDB PF07705.11 gi|242399485|ref|YP_002994910.1| - 0.017 15.4 0.0 0.076 13.3 0.0 2.2 2 0 0 2 2 2 0 CARDB DUF824 PF05688.11 gi|242399485|ref|YP_002994910.1| - 0.046 13.6 0.6 15 5.5 0.1 3.4 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) Cohesin PF00963.18 gi|242399485|ref|YP_002994910.1| - 0.069 13.4 1.1 0.81 9.9 0.1 2.7 2 0 0 2 2 2 0 Cohesin domain NPCBM_assoc PF10633.9 gi|242399485|ref|YP_002994910.1| - 0.083 13.2 0.0 0.3 11.4 0.0 2.1 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase fn3_3 PF14686.6 gi|242399485|ref|YP_002994910.1| - 0.12 12.2 0.2 4.6 7.1 0.0 2.6 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II SpaA PF17802.1 gi|242399485|ref|YP_002994910.1| - 0.17 12.2 2.4 11 6.5 0.0 3.7 3 1 1 4 4 4 0 Prealbumin-like fold domain Hjc PF01870.18 gi|242399486|ref|YP_002994911.1| - 2e-29 101.4 0.1 3.4e-29 100.7 0.1 1.4 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) UPF0102 PF02021.17 gi|242399486|ref|YP_002994911.1| - 0.00027 21.1 0.0 0.00052 20.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HicA_toxin PF07927.12 gi|242399486|ref|YP_002994911.1| - 0.0029 17.6 0.0 0.0068 16.4 0.0 1.6 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, AHJR-like PF18743.1 gi|242399486|ref|YP_002994911.1| - 0.06 12.9 0.0 0.16 11.5 0.0 1.8 1 1 0 1 1 1 0 REase_AHJR-like Hexapep PF00132.24 gi|242399487|ref|YP_002994912.1| - 3.4e-18 64.6 14.5 2.1e-08 33.6 7.0 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|242399487|ref|YP_002994912.1| - 0.00096 18.9 18.7 0.0048 16.6 3.5 3.7 2 1 2 4 4 4 3 Hexapeptide repeat of succinyl-transferase Prenyltransf PF01255.19 gi|242399488|ref|YP_002994913.1| - 1.4e-80 270.1 0.1 1.6e-80 269.9 0.1 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Seryl_tRNA_N PF02403.22 gi|242399488|ref|YP_002994913.1| - 0.0031 17.7 0.8 0.0053 17.0 0.4 1.6 1 1 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Glyco_hydro_4 PF02056.16 gi|242399488|ref|YP_002994913.1| - 0.15 11.6 0.2 0.49 9.9 0.1 1.8 2 0 0 2 2 2 0 Family 4 glycosyl hydrolase GTP_EFTU PF00009.27 gi|242399489|ref|YP_002994914.1| - 5.4e-64 215.3 0.1 8.3e-64 214.7 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|242399489|ref|YP_002994914.1| - 2.3e-26 91.9 0.1 1.8e-25 89.0 0.0 2.5 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|242399489|ref|YP_002994914.1| - 1.4e-25 89.1 0.3 3e-25 88.1 0.3 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|242399489|ref|YP_002994914.1| - 2.7e-23 81.8 0.1 1e-22 79.9 0.1 2.1 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|242399489|ref|YP_002994914.1| - 3.1e-15 56.3 1.2 7e-15 55.2 1.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|242399489|ref|YP_002994914.1| - 0.0026 17.8 0.0 0.0072 16.4 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|242399489|ref|YP_002994914.1| - 0.0067 16.3 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain DUF2283 PF10049.9 gi|242399489|ref|YP_002994914.1| - 0.12 12.7 0.0 0.41 10.9 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) tRNA-synt_2 PF00152.20 gi|242399490|ref|YP_002994915.1| - 1.2e-43 149.4 0.0 1.5e-43 149.1 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|242399490|ref|YP_002994915.1| - 0.085 12.3 0.7 2.6 7.5 0.0 3.0 4 0 0 4 4 4 0 tRNA synthetases class II core domain (F) Nitroreductase PF00881.24 gi|242399491|ref|YP_002994916.1| - 1.7e-32 112.8 0.7 3.4e-17 63.0 0.2 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|242399491|ref|YP_002994916.1| - 1.3e-16 60.9 1.2 5.5e-06 26.1 0.0 3.3 1 1 2 3 3 3 3 Putative TM nitroreductase Pyr_redox_2 PF07992.14 gi|242399492|ref|YP_002994917.1| - 5e-41 140.9 2.3 1e-40 139.9 2.3 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 gi|242399492|ref|YP_002994917.1| - 5e-24 84.3 3.5 1e-18 67.1 0.1 2.7 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_3 PF13738.6 gi|242399492|ref|YP_002994917.1| - 1.4e-19 70.4 1.5 1.7e-14 53.8 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|242399492|ref|YP_002994917.1| - 7.1e-18 64.9 8.2 2.7e-10 40.7 1.2 4.1 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|242399492|ref|YP_002994917.1| - 1.1e-12 48.0 0.0 1e-10 41.7 0.0 2.9 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Fer2_4 PF13510.6 gi|242399492|ref|YP_002994917.1| - 6.1e-09 35.8 0.0 1.6e-08 34.5 0.0 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NAD_binding_7 PF13241.6 gi|242399492|ref|YP_002994917.1| - 8.6e-09 35.8 0.1 3.8e-05 24.1 0.1 2.8 2 0 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|242399492|ref|YP_002994917.1| - 1.9e-08 33.8 0.4 0.0014 18.0 0.2 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|242399492|ref|YP_002994917.1| - 9.7e-08 31.8 2.4 8.2e-06 25.4 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|242399492|ref|YP_002994917.1| - 3.2e-07 30.2 3.8 6e-05 22.8 0.1 4.2 3 1 1 4 4 4 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|242399492|ref|YP_002994917.1| - 2e-06 26.8 0.7 3.6e-05 22.6 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein PALP PF00291.25 gi|242399492|ref|YP_002994917.1| - 6.8e-06 25.7 0.0 0.047 13.1 0.0 2.7 2 1 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme FAD_binding_2 PF00890.24 gi|242399492|ref|YP_002994917.1| - 7.8e-06 25.2 1.1 0.00068 18.8 0.0 2.8 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.22 gi|242399492|ref|YP_002994917.1| - 1.3e-05 24.5 0.5 0.016 14.3 0.0 3.2 3 0 0 3 3 3 1 Glucose inhibited division protein A XdhC_C PF13478.6 gi|242399492|ref|YP_002994917.1| - 6.5e-05 23.4 0.0 0.076 13.5 0.0 2.5 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 gi|242399492|ref|YP_002994917.1| - 9.8e-05 21.8 0.1 0.23 10.8 0.1 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.19 gi|242399492|ref|YP_002994917.1| - 0.00011 21.1 0.2 0.19 10.4 0.1 3.1 3 0 0 3 3 3 1 Nitrogenase component 1 type Oxidoreductase Amino_oxidase PF01593.24 gi|242399492|ref|YP_002994917.1| - 0.00024 20.5 0.0 0.00057 19.3 0.0 1.6 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.19 gi|242399492|ref|YP_002994917.1| - 0.0003 20.1 1.0 0.015 14.5 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain K_oxygenase PF13434.6 gi|242399492|ref|YP_002994917.1| - 0.001 18.3 0.0 0.013 14.6 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) TrkA_N PF02254.18 gi|242399492|ref|YP_002994917.1| - 0.0019 18.4 0.2 5.8 7.2 0.1 3.5 3 0 0 3 3 3 0 TrkA-N domain Thi4 PF01946.17 gi|242399492|ref|YP_002994917.1| - 0.0022 17.3 0.5 0.005 16.1 0.0 1.8 2 0 0 2 2 2 1 Thi4 family FMO-like PF00743.19 gi|242399492|ref|YP_002994917.1| - 0.0076 14.7 0.0 0.46 8.9 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like NADH-G_4Fe-4S_3 PF10588.9 gi|242399492|ref|YP_002994917.1| - 0.0078 15.7 3.6 0.013 15.1 0.0 2.6 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4 PF00037.27 gi|242399492|ref|YP_002994917.1| - 0.02 14.7 0.9 0.02 14.7 0.9 4.6 5 0 0 5 5 3 0 4Fe-4S binding domain IlvN PF07991.12 gi|242399492|ref|YP_002994917.1| - 0.02 14.5 0.1 1.2 8.7 0.0 2.4 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain YjeF_N PF03853.15 gi|242399492|ref|YP_002994917.1| - 0.024 14.5 0.2 1.7 8.5 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus Molybdop_Fe4S4 PF04879.16 gi|242399492|ref|YP_002994917.1| - 0.055 13.5 4.9 0.041 13.9 1.6 2.5 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain UDPG_MGDP_dh_N PF03721.14 gi|242399492|ref|YP_002994917.1| - 0.059 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Molybdopterin PF00384.22 gi|242399492|ref|YP_002994917.1| - 0.092 11.7 0.0 0.25 10.3 0.0 1.6 2 0 0 2 2 2 0 Molybdopterin oxidoreductase F420_oxidored PF03807.17 gi|242399492|ref|YP_002994917.1| - 0.11 13.1 0.1 9.9 6.8 0.1 3.5 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Lycopene_cycl PF05834.12 gi|242399492|ref|YP_002994917.1| - 0.14 11.2 0.2 0.88 8.5 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|242399492|ref|YP_002994917.1| - 0.19 11.6 2.0 6 6.7 0.3 2.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DFP PF04127.15 gi|242399492|ref|YP_002994917.1| - 0.21 11.4 0.6 1 9.2 0.1 2.3 4 0 0 4 4 2 0 DNA / pantothenate metabolism flavoprotein NAD_binding_9 PF13454.6 gi|242399492|ref|YP_002994917.1| - 0.31 11.0 0.6 1.2 9.1 0.1 2.2 3 0 0 3 3 2 0 FAD-NAD(P)-binding Fer4_15 PF13459.6 gi|242399492|ref|YP_002994917.1| - 3.3 8.5 6.4 0.93 10.3 1.3 2.8 2 1 0 2 2 1 0 4Fe-4S single cluster domain Complex1_51K PF01512.17 gi|242399493|ref|YP_002994918.1| - 7.3e-51 172.0 0.0 1.6e-50 170.9 0.0 1.6 2 0 0 2 2 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|242399493|ref|YP_002994918.1| - 2e-30 104.7 0.0 2e-30 104.7 0.0 3.1 3 0 0 3 3 3 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer4 PF00037.27 gi|242399493|ref|YP_002994918.1| - 1.1e-11 44.0 14.1 2.5e-07 30.2 1.9 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain SLBB PF10531.9 gi|242399493|ref|YP_002994918.1| - 9.1e-09 35.1 0.7 1.7e-08 34.2 0.7 1.5 1 0 0 1 1 1 1 SLBB domain Fer4_9 PF13187.6 gi|242399493|ref|YP_002994918.1| - 8.8e-07 29.0 12.1 8.8e-07 29.0 12.1 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242399493|ref|YP_002994918.1| - 1.4e-06 28.3 12.0 1.4e-06 28.3 12.0 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|242399493|ref|YP_002994918.1| - 4.2e-06 27.3 25.0 2e-05 25.1 14.6 3.5 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|242399493|ref|YP_002994918.1| - 6.3e-05 22.9 14.1 0.00012 22.0 2.4 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|242399493|ref|YP_002994918.1| - 7.1e-05 22.9 26.9 0.002 18.2 2.7 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242399493|ref|YP_002994918.1| - 0.00025 20.9 23.0 0.0076 16.3 1.5 4.3 3 1 0 3 3 3 2 4Fe-4S binding domain 2Fe-2S_thioredx PF01257.19 gi|242399493|ref|YP_002994918.1| - 0.00035 20.5 0.0 0.00086 19.2 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Fer4_16 PF13484.6 gi|242399493|ref|YP_002994918.1| - 0.0028 18.6 21.0 0.0053 17.7 2.3 3.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Suc_Fer-like PF06999.12 gi|242399493|ref|YP_002994918.1| - 0.0052 16.7 0.1 0.0092 15.9 0.1 1.3 1 0 0 1 1 1 1 Sucrase/ferredoxin-like Fer4_8 PF13183.6 gi|242399493|ref|YP_002994918.1| - 0.029 14.8 16.7 0.28 11.7 2.1 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|242399493|ref|YP_002994918.1| - 2.1 9.1 23.5 0.58 10.8 4.1 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain zf-CXXC PF02008.20 gi|242399493|ref|YP_002994918.1| - 4.7 7.3 14.7 0.76 9.8 0.6 3.3 3 0 0 3 3 3 0 CXXC zinc finger domain Fer4_3 PF12798.7 gi|242399493|ref|YP_002994918.1| - 6.4 8.0 26.7 0.28 12.2 2.9 3.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|242399493|ref|YP_002994918.1| - 7.5 7.2 21.7 0.49 11.0 2.2 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|242399493|ref|YP_002994918.1| - 8.5 7.0 19.2 2.7 8.6 2.7 3.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain 2Fe-2S_thioredx PF01257.19 gi|242399494|ref|YP_002994919.1| - 1.7e-53 180.3 0.0 2.1e-53 180.1 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Fer4_22 PF17179.4 gi|242399495|ref|YP_002994920.1| - 4.8e-24 85.0 14.2 4.8e-24 85.0 14.2 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242399495|ref|YP_002994920.1| - 2.6e-05 24.3 16.2 0.00099 19.2 0.2 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242399495|ref|YP_002994920.1| - 0.00026 20.9 10.5 0.0047 17.0 1.9 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|242399495|ref|YP_002994920.1| - 0.00031 20.8 15.7 0.099 12.8 16.4 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|242399495|ref|YP_002994920.1| - 0.00038 20.9 13.8 0.0035 17.7 14.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|242399495|ref|YP_002994920.1| - 0.00052 20.5 17.0 0.033 14.8 2.7 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|242399495|ref|YP_002994920.1| - 0.009 16.9 17.6 0.089 13.7 2.1 2.8 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|242399495|ref|YP_002994920.1| - 0.019 14.7 3.4 0.019 14.7 3.4 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|242399495|ref|YP_002994920.1| - 0.035 14.2 18.2 0.34 11.1 1.9 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|242399495|ref|YP_002994920.1| - 0.15 12.2 21.6 0.098 12.8 4.5 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|242399495|ref|YP_002994920.1| - 0.21 12.2 20.4 4.1 8.0 20.7 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|242399495|ref|YP_002994920.1| - 1.4 10.0 22.8 2.8 9.1 3.5 3.6 2 1 1 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|242399495|ref|YP_002994920.1| - 1.5 9.5 19.8 0.25 11.9 2.3 3.1 2 1 0 2 2 2 0 4Fe-4S binding domain DHODB_Fe-S_bind PF10418.9 gi|242399496|ref|YP_002994921.1| - 9.9e-14 50.9 2.1 3.2e-13 49.2 2.1 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|242399496|ref|YP_002994921.1| - 2.1e-13 50.8 0.0 3.8e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|242399496|ref|YP_002994921.1| - 2.7e-09 37.3 0.0 4.6e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_8 PF08022.12 gi|242399496|ref|YP_002994921.1| - 0.015 15.4 0.0 0.033 14.3 0.0 1.6 1 1 0 1 1 1 0 FAD-binding domain tRNA_anti-codon PF01336.25 gi|242399496|ref|YP_002994921.1| - 0.15 12.1 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Oxidored_q6 PF01058.22 gi|242399497|ref|YP_002994922.1| - 5.2e-23 81.3 0.0 7.7e-23 80.8 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.19 gi|242399498|ref|YP_002994923.1| - 1.1e-34 120.2 0.0 3.4e-18 65.8 0.0 2.6 1 1 2 3 3 3 2 Nickel-dependent hydrogenase DUF257 PF03192.13 gi|242399499|ref|YP_002994924.1| - 2.7e-59 200.4 0.7 3.1e-59 200.2 0.7 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 DUF257 PF03192.13 gi|242399500|ref|YP_002994925.1| - 8.5e-51 172.7 1.6 1e-50 172.4 1.6 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 DUF4408 PF14364.6 gi|242399500|ref|YP_002994925.1| - 0.33 10.7 1.2 0.56 10.0 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4408) GTP_EFTU_D4 PF14578.6 gi|242399501|ref|YP_002994926.1| - 8.7e-10 38.4 0.5 1.2e-09 38.0 0.5 1.2 1 0 0 1 1 1 1 Elongation factor Tu domain 4 TatD_DNase PF01026.21 gi|242399502|ref|YP_002994927.1| - 7.1e-30 104.2 0.3 8.3e-30 104.0 0.3 1.0 1 0 0 1 1 1 1 TatD related DNase Cas_VVA1548 PF09652.10 gi|242399502|ref|YP_002994927.1| - 0.024 14.8 0.0 0.19 12.0 0.0 2.3 2 0 0 2 2 2 0 Putative CRISPR-associated protein (Cas_VVA1548) AP_endonuc_2 PF01261.24 gi|242399502|ref|YP_002994927.1| - 0.091 12.2 0.1 0.17 11.3 0.1 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel RTC PF01137.21 gi|242399503|ref|YP_002994928.1| - 1.7e-75 253.1 0.0 1.9e-75 252.9 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|242399503|ref|YP_002994928.1| - 2.8e-23 82.4 0.0 5.3e-23 81.5 0.0 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain DUF3662 PF12401.8 gi|242399504|ref|YP_002994929.1| - 0.042 14.2 0.1 0.11 12.9 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2662) DUF2420 PF10336.9 gi|242399504|ref|YP_002994929.1| - 0.091 12.8 0.4 19 5.3 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2420) Metallophos_2 PF12850.7 gi|242399505|ref|YP_002994930.1| - 9.3e-32 110.5 0.0 1.1e-31 110.3 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|242399505|ref|YP_002994930.1| - 1.7e-10 41.7 1.3 6.5e-08 33.3 0.2 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|242399505|ref|YP_002994930.1| - 0.0013 18.1 0.3 0.043 13.1 0.1 2.0 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Sld5 PF05916.11 gi|242399506|ref|YP_002994931.1| - 1e-05 25.9 1.9 1.4e-05 25.5 1.9 1.2 1 0 0 1 1 1 1 GINS complex protein Kinesin_assoc PF16183.5 gi|242399506|ref|YP_002994931.1| - 0.12 12.5 1.2 14 5.8 0.0 2.1 2 0 0 2 2 2 0 Kinesin-associated MCM PF00493.23 gi|242399507|ref|YP_002994932.1| - 1.2e-85 286.2 0.2 8.8e-56 188.5 0.0 3.3 3 0 0 3 3 3 3 MCM P-loop domain Intein_splicing PF14890.6 gi|242399507|ref|YP_002994932.1| - 6.1e-44 149.2 5.5 3.6e-26 91.7 0.3 3.2 3 0 0 3 3 2 2 Intein splicing domain MCM_OB PF17207.3 gi|242399507|ref|YP_002994932.1| - 1.1e-35 122.2 0.0 2.2e-35 121.2 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|242399507|ref|YP_002994932.1| - 1.2e-30 105.8 1.2 3.5e-30 104.3 1.2 1.9 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|242399507|ref|YP_002994932.1| - 1.7e-13 51.0 0.3 7e-13 49.1 0.3 2.1 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|242399507|ref|YP_002994932.1| - 2.2e-07 30.5 0.0 1.8e-06 27.5 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_3 PF01381.22 gi|242399507|ref|YP_002994932.1| - 1.1e-05 25.4 0.0 3.1e-05 23.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix AAA_3 PF07726.11 gi|242399507|ref|YP_002994932.1| - 0.00021 21.1 0.1 0.0027 17.6 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|242399507|ref|YP_002994932.1| - 0.00031 20.8 0.5 0.022 14.7 0.0 3.1 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|242399507|ref|YP_002994932.1| - 0.00053 19.7 0.2 0.0076 16.0 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain Zn-ribbon_8 PF09723.10 gi|242399507|ref|YP_002994932.1| - 0.00083 19.4 0.4 0.0018 18.3 0.4 1.5 1 0 0 1 1 1 1 Zinc ribbon domain HTH_19 PF12844.7 gi|242399507|ref|YP_002994932.1| - 0.0012 18.8 0.2 0.007 16.4 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|242399507|ref|YP_002994932.1| - 0.024 15.0 0.0 0.079 13.3 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain HypA PF01155.19 gi|242399507|ref|YP_002994932.1| - 0.027 14.5 0.1 0.077 13.0 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2540 PF10802.8 gi|242399507|ref|YP_002994932.1| - 0.051 13.7 0.1 0.051 13.7 0.1 3.3 3 0 0 3 3 2 0 Protein of unknown function (DUF2540) PhnA_Zn_Ribbon PF08274.12 gi|242399507|ref|YP_002994932.1| - 0.053 13.5 0.5 3.2 7.8 0.0 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DEAD PF00270.29 gi|242399507|ref|YP_002994932.1| - 0.14 11.9 0.1 0.5 10.1 0.1 1.9 1 0 0 1 1 1 0 DEAD/DEAH box helicase TF_Zn_Ribbon PF08271.12 gi|242399507|ref|YP_002994932.1| - 0.33 10.5 2.0 4.2 7.0 0.3 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding eIF-5_eIF-2B PF01873.17 gi|242399508|ref|YP_002994933.1| - 8.8e-38 128.8 0.0 1e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Tmemb_55A PF09788.9 gi|242399508|ref|YP_002994933.1| - 0.002 17.3 0.0 0.0021 17.2 0.0 1.1 1 0 0 1 1 1 1 Transmembrane protein 55A Lar_restr_allev PF14354.6 gi|242399508|ref|YP_002994933.1| - 0.002 18.5 0.8 0.0036 17.7 0.8 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar Elf1 PF05129.13 gi|242399508|ref|YP_002994933.1| - 0.0036 17.3 0.3 0.0062 16.6 0.3 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like FdhE PF04216.12 gi|242399508|ref|YP_002994933.1| - 0.0074 16.2 0.0 0.0085 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Zn-ribbon_8 PF09723.10 gi|242399508|ref|YP_002994933.1| - 0.016 15.3 0.3 1.5 9.0 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|242399508|ref|YP_002994933.1| - 0.024 14.6 0.4 0.041 13.8 0.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|242399508|ref|YP_002994933.1| - 0.025 14.3 1.1 7.1 6.5 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|242399508|ref|YP_002994933.1| - 0.055 12.8 1.2 0.055 12.8 1.2 2.0 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF35_N PF12172.8 gi|242399508|ref|YP_002994933.1| - 0.12 12.3 0.2 15 5.5 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Vps36-NZF-N PF16988.5 gi|242399508|ref|YP_002994933.1| - 0.14 11.6 1.3 0.29 10.6 1.3 1.6 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-ribbon_3 PF13248.6 gi|242399508|ref|YP_002994933.1| - 0.21 11.0 2.6 0.8 9.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|242399508|ref|YP_002994933.1| - 0.34 10.5 2.8 1.2 8.7 2.8 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf_C2H2_13 PF18508.1 gi|242399508|ref|YP_002994933.1| - 0.81 9.3 4.3 1.6 8.4 0.2 2.6 2 1 1 3 3 3 0 Zinc finger domain Carboxyl_trans PF01039.22 gi|242399509|ref|YP_002994934.1| - 5e-204 678.5 0.3 5.8e-204 678.3 0.3 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|242399509|ref|YP_002994934.1| - 3.6e-07 29.9 0.3 8e-07 28.8 0.1 1.6 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) FlgM PF04316.13 gi|242399509|ref|YP_002994934.1| - 0.17 12.3 0.3 0.44 10.9 0.3 1.7 1 0 0 1 1 1 0 Anti-sigma-28 factor, FlgM OAD_gamma PF04277.13 gi|242399510|ref|YP_002994935.1| - 9.5e-14 51.8 0.5 1.2e-13 51.4 0.5 1.1 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain Biotin_lipoyl PF00364.22 gi|242399511|ref|YP_002994936.1| - 1.9e-25 88.5 2.4 4.7e-25 87.2 2.4 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|242399511|ref|YP_002994936.1| - 3.2e-15 55.7 1.6 6.5e-07 29.1 0.0 2.3 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|242399511|ref|YP_002994936.1| - 3.1e-06 27.8 0.9 0.055 14.2 0.0 2.7 3 0 0 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|242399511|ref|YP_002994936.1| - 3.1e-05 23.3 0.2 0.06 12.6 0.0 2.2 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion RnfC_N PF13375.6 gi|242399511|ref|YP_002994936.1| - 0.00033 20.5 0.7 0.041 13.8 0.1 2.3 1 1 1 2 2 2 2 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.20 gi|242399511|ref|YP_002994936.1| - 0.00049 19.8 0.1 0.27 11.0 0.0 2.4 1 1 1 2 2 2 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQRA PF05896.11 gi|242399511|ref|YP_002994936.1| - 0.0015 18.0 0.9 0.053 12.9 0.2 2.1 1 1 1 2 2 2 2 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCV_H PF01597.19 gi|242399511|ref|YP_002994936.1| - 0.084 12.8 0.2 0.15 11.9 0.2 1.4 1 0 0 1 1 1 0 Glycine cleavage H-protein Peptidase_M23 PF01551.22 gi|242399511|ref|YP_002994936.1| - 0.17 12.1 1.2 2.7 8.3 1.2 2.7 1 1 0 1 1 1 0 Peptidase family M23 YqfD PF06898.11 gi|242399511|ref|YP_002994936.1| - 2.5 6.9 7.1 0.42 9.4 0.3 2.3 2 1 1 3 3 3 0 Putative stage IV sporulation protein YqfD OAD_beta PF03977.13 gi|242399512|ref|YP_002994937.1| - 3.2e-158 526.3 29.6 3.6e-158 526.1 29.6 1.0 1 0 0 1 1 1 1 Na+-transporting oxaloacetate decarboxylase beta subunit TMEM40 PF15817.5 gi|242399512|ref|YP_002994937.1| - 0.43 10.4 1.7 1.1 9.0 0.1 2.2 2 0 0 2 2 2 0 Transmembrane protein 40 family Cpn60_TCP1 PF00118.24 gi|242399513|ref|YP_002994938.1| - 7e-184 612.0 27.1 8e-184 611.8 27.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family UPF0029 PF01205.19 gi|242399514|ref|YP_002994939.1| - 1.4e-31 108.9 0.0 2.2e-31 108.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|242399514|ref|YP_002994939.1| - 7.3e-09 35.4 0.0 1.2e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) Sigma70_r4_2 PF08281.12 gi|242399515|ref|YP_002994940.1| - 9e-05 22.1 0.3 0.00013 21.6 0.3 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|242399515|ref|YP_002994940.1| - 0.00011 21.9 0.2 0.00045 20.0 0.3 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_11 PF08279.12 gi|242399515|ref|YP_002994940.1| - 0.00099 19.0 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|242399515|ref|YP_002994940.1| - 0.0032 17.0 0.0 0.0062 16.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|242399515|ref|YP_002994940.1| - 0.005 16.3 0.1 0.0074 15.8 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GntR PF00392.21 gi|242399515|ref|YP_002994940.1| - 0.0093 15.6 0.3 0.022 14.4 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|242399515|ref|YP_002994940.1| - 0.011 15.6 0.1 0.02 14.8 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|242399515|ref|YP_002994940.1| - 0.017 15.1 0.3 0.033 14.2 0.0 1.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_3 PF01381.22 gi|242399515|ref|YP_002994940.1| - 0.029 14.4 0.6 0.13 12.4 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix Sigma70_r3 PF04539.16 gi|242399515|ref|YP_002994940.1| - 0.043 13.9 0.2 0.066 13.3 0.2 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 KORA PF16509.5 gi|242399515|ref|YP_002994940.1| - 0.048 13.9 0.1 0.086 13.1 0.1 1.5 1 1 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_29 PF13551.6 gi|242399515|ref|YP_002994940.1| - 0.051 13.6 0.0 0.085 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF134 PF02001.16 gi|242399515|ref|YP_002994940.1| - 0.052 14.1 0.1 0.08 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF134 Sigma70_ECF PF07638.11 gi|242399515|ref|YP_002994940.1| - 0.07 13.0 0.2 0.12 12.3 0.2 1.4 1 0 0 1 1 1 0 ECF sigma factor UPF0122 PF04297.14 gi|242399515|ref|YP_002994940.1| - 0.091 13.0 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like GerE PF00196.19 gi|242399515|ref|YP_002994940.1| - 0.098 12.2 0.2 0.15 11.6 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|242399515|ref|YP_002994940.1| - 0.1 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain EssA PF10661.9 gi|242399515|ref|YP_002994940.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein EssA TrmB PF01978.19 gi|242399515|ref|YP_002994940.1| - 0.16 11.9 0.1 0.32 10.9 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB bPH_5 PF10882.8 gi|242399517|ref|YP_002994942.1| - 0.013 15.6 0.0 0.023 14.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial PH domain bPH_4 PF06713.11 gi|242399517|ref|YP_002994942.1| - 0.088 12.9 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial PH domain Drf_FH3 PF06367.16 gi|242399518|ref|YP_002994943.1| - 0.021 14.4 0.9 0.03 14.0 0.6 1.4 1 1 0 1 1 1 0 Diaphanous FH3 Domain RIO1 PF01163.22 gi|242399519|ref|YP_002994944.1| - 2.2e-15 56.7 0.2 2.7e-15 56.4 0.2 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|242399519|ref|YP_002994944.1| - 1.3e-13 50.9 0.5 1.7e-13 50.6 0.5 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|242399519|ref|YP_002994944.1| - 3.9e-13 49.3 0.4 4.8e-13 49.0 0.4 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|242399519|ref|YP_002994944.1| - 1.7e-11 43.9 0.2 2.5e-11 43.3 0.2 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|242399519|ref|YP_002994944.1| - 8.8e-10 38.9 0.2 7e-05 22.9 0.1 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family WaaY PF06176.11 gi|242399519|ref|YP_002994944.1| - 0.0002 21.1 0.3 0.00033 20.3 0.3 1.4 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.20 gi|242399519|ref|YP_002994944.1| - 0.0039 16.8 0.0 0.53 9.8 0.0 2.1 1 1 1 2 2 2 1 Choline/ethanolamine kinase EcKinase PF02958.20 gi|242399519|ref|YP_002994944.1| - 0.048 13.0 0.0 0.092 12.0 0.0 1.5 1 1 0 1 1 1 0 Ecdysteroid kinase FTA2 PF13095.6 gi|242399519|ref|YP_002994944.1| - 0.081 12.5 0.0 0.2 11.2 0.0 1.5 1 1 0 1 1 1 0 Kinetochore Sim4 complex subunit FTA2 MutS_V PF00488.21 gi|242399520|ref|YP_002994945.1| - 1.6e-07 31.5 0.0 3e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_14 PF13173.6 gi|242399520|ref|YP_002994945.1| - 0.00038 20.5 0.2 0.0024 17.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|242399520|ref|YP_002994945.1| - 0.0018 18.7 0.9 8.8 6.7 0.1 3.6 2 1 1 3 3 3 1 AAA ATPase domain AAA_21 PF13304.6 gi|242399520|ref|YP_002994945.1| - 0.0055 16.6 10.6 0.046 13.5 0.4 3.8 3 2 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|242399520|ref|YP_002994945.1| - 0.0064 16.9 1.8 0.026 15.0 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) CdiI_2 PF18593.1 gi|242399520|ref|YP_002994945.1| - 0.0078 16.8 1.1 0.11 13.2 0.2 3.2 3 0 0 3 3 3 1 CdiI immunity protein CPT PF07931.12 gi|242399520|ref|YP_002994945.1| - 0.0083 16.0 0.0 0.046 13.6 0.0 2.2 2 1 1 3 3 3 1 Chloramphenicol phosphotransferase-like protein AAA_28 PF13521.6 gi|242399520|ref|YP_002994945.1| - 0.015 15.5 0.1 0.04 14.2 0.0 1.8 2 0 0 2 2 1 0 AAA domain Gp49 PF05973.14 gi|242399520|ref|YP_002994945.1| - 0.045 13.9 1.5 0.33 11.1 0.2 2.7 2 0 0 2 2 2 0 Phage derived protein Gp49-like (DUF891) CARD_2 PF16739.5 gi|242399520|ref|YP_002994945.1| - 0.35 10.9 3.8 3.8 7.6 0.1 3.1 2 1 0 2 2 2 0 Caspase recruitment domain ABC_tran PF00005.27 gi|242399520|ref|YP_002994945.1| - 0.4 11.2 2.6 1.7 9.2 0.4 2.7 2 0 0 2 2 2 0 ABC transporter 7TMR-HDED PF07697.11 gi|242399520|ref|YP_002994945.1| - 0.45 10.6 4.9 1.6 8.8 4.6 2.1 1 1 0 1 1 1 0 7TM-HD extracellular MRP-L51 PF10244.9 gi|242399520|ref|YP_002994945.1| - 0.9 9.8 4.7 2.1 8.6 0.6 2.6 2 0 0 2 2 2 0 Mitochondrial ribosomal subunit DUF2203 PF09969.9 gi|242399520|ref|YP_002994945.1| - 5.6 7.7 6.9 37 5.1 0.0 3.3 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF2779 PF11074.8 gi|242399520|ref|YP_002994945.1| - 8.5 6.9 7.0 6.9 7.2 4.0 2.4 2 1 0 2 2 2 0 Domain of unknown function(DUF2779) MoaC PF01967.21 gi|242399521|ref|YP_002994946.1| - 4.4e-52 175.8 0.4 5.6e-52 175.4 0.4 1.0 1 0 0 1 1 1 1 MoaC family YbjQ_1 PF01906.17 gi|242399522|ref|YP_002994947.1| - 1.3e-36 125.4 2.6 1.4e-36 125.2 2.6 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|242399522|ref|YP_002994947.1| - 0.0022 18.4 1.3 1.8 9.0 0.3 2.2 1 1 0 2 2 2 2 Selenium binding protein ABC2_membrane_2 PF12679.7 gi|242399523|ref|YP_002994948.1| - 5.4e-34 117.8 18.2 1e-33 116.9 18.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|242399523|ref|YP_002994948.1| - 1.6e-13 50.5 30.1 1.6e-13 50.5 30.1 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|242399523|ref|YP_002994948.1| - 1.5e-08 34.8 21.7 1.5e-08 34.8 21.7 2.3 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|242399523|ref|YP_002994948.1| - 8.5e-07 28.6 24.9 8.5e-07 28.6 24.9 2.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|242399523|ref|YP_002994948.1| - 0.00089 18.9 31.3 0.00089 18.9 31.3 2.8 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|242399524|ref|YP_002994949.1| - 5.4e-32 111.2 0.0 1.1e-31 110.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter DUF4162 PF13732.6 gi|242399524|ref|YP_002994949.1| - 1.1e-10 42.1 1.4 2.2e-10 41.1 1.4 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|242399524|ref|YP_002994949.1| - 3.9e-10 40.0 6.5 1.4e-07 31.6 0.0 3.0 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|242399524|ref|YP_002994949.1| - 0.017 15.6 1.1 0.017 15.6 1.1 2.3 2 1 0 2 2 2 0 AAA domain MukB PF04310.12 gi|242399524|ref|YP_002994949.1| - 0.019 14.8 0.2 0.05 13.4 0.0 1.7 2 0 0 2 2 2 0 MukB N-terminal AAA_29 PF13555.6 gi|242399524|ref|YP_002994949.1| - 0.042 13.6 0.1 0.074 12.8 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|242399524|ref|YP_002994949.1| - 0.044 13.4 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.19 gi|242399524|ref|YP_002994949.1| - 0.07 12.6 0.1 10 5.5 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Glyco_hydro_20 PF00728.22 gi|242399524|ref|YP_002994949.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 20, catalytic domain NPCBM_assoc PF10633.9 gi|242399525|ref|YP_002994950.1| - 3.5e-25 88.1 0.0 3.3e-14 52.9 0.2 4.8 4 0 0 4 4 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.6 gi|242399525|ref|YP_002994950.1| - 3.4e-12 46.5 3.7 2.1e-08 34.3 0.0 4.8 5 1 1 6 6 6 1 Carboxypeptidase regulatory-like domain MG2 PF01835.19 gi|242399525|ref|YP_002994950.1| - 1.1e-10 41.8 0.3 0.0045 17.4 0.1 5.3 4 1 1 5 5 5 2 MG2 domain FixG_C PF11614.8 gi|242399525|ref|YP_002994950.1| - 9.8e-10 38.7 7.0 0.13 12.5 1.0 6.6 2 2 4 7 7 7 3 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF4625 PF15418.6 gi|242399525|ref|YP_002994950.1| - 4.8e-07 30.1 1.2 0.025 14.8 0.1 4.7 4 1 0 4 4 4 1 Domain of unknown function (DUF4625) PEGA PF08308.11 gi|242399525|ref|YP_002994950.1| - 1.1e-06 28.4 2.3 1.6e-05 24.7 0.3 3.6 3 0 0 3 3 3 1 PEGA domain DUF916 PF06030.12 gi|242399525|ref|YP_002994950.1| - 1.6e-05 25.0 9.7 0.079 13.0 0.1 6.4 5 2 2 7 7 6 1 Bacterial protein of unknown function (DUF916) CarbopepD_reg_2 PF13715.6 gi|242399525|ref|YP_002994950.1| - 1.8e-05 24.6 0.5 1.8e-05 24.6 0.5 3.8 5 1 0 5 5 5 1 CarboxypepD_reg-like domain fn3_5 PF06280.12 gi|242399525|ref|YP_002994950.1| - 0.0015 19.2 1.7 4.2 8.1 0.0 4.6 2 1 2 4 4 4 1 Fn3-like domain CBM_4_9 PF02018.17 gi|242399525|ref|YP_002994950.1| - 0.0017 18.7 2.3 5.2 7.3 0.0 4.1 3 1 1 4 4 4 2 Carbohydrate binding domain fn3_6 PF17766.1 gi|242399525|ref|YP_002994950.1| - 0.0032 17.6 0.9 0.032 14.4 0.4 2.9 2 0 0 2 2 2 1 Fibronectin type-III domain Alpha_adaptinC2 PF02883.20 gi|242399525|ref|YP_002994950.1| - 0.0033 17.7 0.3 0.043 14.1 0.1 2.9 4 0 0 4 4 3 1 Adaptin C-terminal domain DUF11 PF01345.18 gi|242399525|ref|YP_002994950.1| - 0.0034 17.7 0.4 8.9 6.7 0.3 3.6 3 1 0 3 3 3 0 Domain of unknown function DUF11 Transglut_N PF00868.20 gi|242399525|ref|YP_002994950.1| - 0.011 16.1 0.2 3.8 7.9 0.0 3.8 4 0 0 4 4 4 0 Transglutaminase family CooC_C PF15976.5 gi|242399525|ref|YP_002994950.1| - 0.016 15.2 0.1 0.19 11.8 0.0 2.8 3 0 0 3 3 2 0 CS1-pili formation C-terminal DUF4832 PF16116.5 gi|242399525|ref|YP_002994950.1| - 0.016 15.0 6.0 0.081 12.8 0.6 3.7 3 2 2 5 5 4 0 Domain of unknown function (DUF4832) DUF756 PF05506.12 gi|242399525|ref|YP_002994950.1| - 0.063 14.2 0.2 0.68 10.9 0.1 2.8 2 2 0 2 2 2 0 Domain of unknown function (DUF756) DUF4469 PF14734.6 gi|242399525|ref|YP_002994950.1| - 0.069 13.3 13.7 1.5 9.0 1.0 4.8 5 1 1 6 6 5 0 Domain of unknown function (DUF4469) with IG-like fold I-set PF07679.16 gi|242399525|ref|YP_002994950.1| - 0.16 12.0 0.5 1.1 9.4 0.1 2.7 2 0 0 2 2 2 0 Immunoglobulin I-set domain Peptidase_S55 PF05580.12 gi|242399525|ref|YP_002994950.1| - 0.17 11.8 3.5 0.096 12.6 0.3 2.3 2 1 0 2 2 2 0 SpoIVB peptidase S55 Ig_GlcNase PF18368.1 gi|242399525|ref|YP_002994950.1| - 0.36 11.0 2.2 7 6.9 0.1 3.8 5 0 0 5 5 4 0 Exo-beta-D-glucosaminidase Ig-fold domain DUF1533 PF07550.11 gi|242399525|ref|YP_002994950.1| - 0.51 10.3 8.8 9.6 6.2 0.2 4.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1533) MBG PF17883.1 gi|242399525|ref|YP_002994950.1| - 6 7.5 6.7 68 4.1 0.0 4.5 4 1 0 5 5 5 0 MBG domain ABC2_membrane_2 PF12679.7 gi|242399526|ref|YP_002994951.1| - 4.2e-44 151.0 12.0 4.8e-44 150.8 12.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|242399526|ref|YP_002994951.1| - 7.6e-09 35.8 14.3 4.8e-08 33.2 14.3 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|242399526|ref|YP_002994951.1| - 1e-07 31.6 15.6 1.8e-07 30.8 15.6 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|242399526|ref|YP_002994951.1| - 1.1e-06 28.3 11.9 1.1e-06 28.3 11.9 2.2 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|242399526|ref|YP_002994951.1| - 0.00044 19.5 25.5 0.0039 16.4 25.5 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3382 PF11862.8 gi|242399526|ref|YP_002994951.1| - 0.041 14.2 2.2 0.77 10.1 0.7 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3382) DUF4179 PF13786.6 gi|242399526|ref|YP_002994951.1| - 0.54 10.8 2.0 1.1 9.8 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4179) RtcB PF01139.17 gi|242399527|ref|YP_002994952.1| - 2.9e-178 593.3 0.0 3.3e-178 593.1 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB LAGLIDADG_3 PF14528.6 gi|242399527|ref|YP_002994952.1| - 9.2e-17 61.1 6.2 2.5e-12 46.9 0.1 3.0 3 0 0 3 3 3 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|242399527|ref|YP_002994952.1| - 1.3e-15 57.5 0.0 3.1e-15 56.3 0.0 1.7 1 0 0 1 1 1 1 Intein splicing domain Methyltranf_PUA PF13636.6 gi|242399528|ref|YP_002994953.1| - 1.1e-12 47.7 1.0 1.8e-12 47.0 1.0 1.4 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Methyltr_RsmB-F PF01189.17 gi|242399529|ref|YP_002994954.1| - 1e-53 182.0 0.0 1.3e-53 181.6 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|242399529|ref|YP_002994954.1| - 9.2e-17 61.3 0.1 2.2e-16 60.1 0.0 1.7 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|242399529|ref|YP_002994954.1| - 1.4e-05 24.9 0.0 1.9e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|242399529|ref|YP_002994954.1| - 0.0023 17.7 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|242399529|ref|YP_002994954.1| - 0.0048 17.6 0.0 0.089 13.5 0.0 2.4 2 1 1 3 3 3 1 Methyltransferase domain FtsJ PF01728.19 gi|242399529|ref|YP_002994954.1| - 0.018 15.2 0.0 0.035 14.2 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.19 gi|242399529|ref|YP_002994954.1| - 0.071 12.8 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Archease PF01951.16 gi|242399530|ref|YP_002994955.1| - 5.7e-45 152.9 0.6 6.4e-45 152.8 0.6 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Pantoate_transf PF02548.15 gi|242399531|ref|YP_002994956.1| - 3.2e-109 364.3 0.2 3.7e-109 364.1 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|242399531|ref|YP_002994956.1| - 3.3e-08 33.3 0.9 1.5e-06 27.9 0.2 2.3 2 1 0 2 2 2 1 Phosphoenolpyruvate phosphomutase NanE PF04131.14 gi|242399531|ref|YP_002994956.1| - 0.0026 17.0 0.5 2.4 7.3 0.0 3.1 3 0 0 3 3 3 2 Putative N-acetylmannosamine-6-phosphate epimerase Amdase PF17645.1 gi|242399531|ref|YP_002994956.1| - 0.0059 16.2 0.4 0.11 12.1 0.1 2.3 2 0 0 2 2 2 1 Arylmalonate decarboxylase ComA PF02679.15 gi|242399531|ref|YP_002994956.1| - 0.015 14.8 0.4 2.4 7.6 0.1 2.2 1 1 1 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) BtpA PF03437.15 gi|242399531|ref|YP_002994956.1| - 0.04 13.4 0.9 2.9 7.3 0.1 2.5 1 1 1 2 2 2 0 BtpA family Peptidase_U32 PF01136.19 gi|242399531|ref|YP_002994956.1| - 0.076 12.2 0.1 0.15 11.2 0.1 1.5 1 0 0 1 1 1 0 Peptidase family U32 Aminotran_1_2 PF00155.21 gi|242399532|ref|YP_002994957.1| - 3.6e-46 158.0 0.0 4e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|242399532|ref|YP_002994957.1| - 6.9e-05 21.6 0.0 8.4e-05 21.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Met_gamma_lyase PF06838.11 gi|242399532|ref|YP_002994957.1| - 0.00019 20.1 0.1 0.00025 19.7 0.1 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase Alliinase_C PF04864.13 gi|242399532|ref|YP_002994957.1| - 0.00054 19.0 0.0 0.0018 17.2 0.0 1.8 2 0 0 2 2 2 1 Allinase Beta_elim_lyase PF01212.21 gi|242399532|ref|YP_002994957.1| - 0.016 14.5 0.0 0.024 13.9 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|242399532|ref|YP_002994957.1| - 0.022 13.7 0.1 0.035 13.1 0.1 1.2 1 0 0 1 1 1 0 Aminotransferase class-V DUF5616 PF18481.1 gi|242399532|ref|YP_002994957.1| - 0.16 12.3 0.0 1.8 8.9 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF5616) EamA PF00892.20 gi|242399533|ref|YP_002994958.1| - 4.5e-38 130.5 31.5 3.9e-23 82.1 13.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family CRT-like PF08627.10 gi|242399533|ref|YP_002994958.1| - 0.0037 16.3 5.5 0.0077 15.2 0.7 2.2 2 0 0 2 2 2 2 CRT-like, chloroquine-resistance transporter-like PUNUT PF16913.5 gi|242399533|ref|YP_002994958.1| - 0.0037 16.5 3.1 0.0037 16.5 3.1 2.2 2 0 0 2 2 2 1 Purine nucleobase transmembrane transport Cas_Cas5d PF09704.10 gi|242399533|ref|YP_002994958.1| - 0.23 11.3 0.0 0.34 10.8 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) EmrE PF13536.6 gi|242399533|ref|YP_002994958.1| - 1.6 8.3 15.1 0.032 13.8 6.1 2.6 1 1 1 3 3 3 0 Putative multidrug resistance efflux transporter PqqD PF05402.12 gi|242399534|ref|YP_002994959.1| - 6.8e-15 55.1 0.0 7.7e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF4317 PF14199.6 gi|242399534|ref|YP_002994959.1| - 0.016 14.4 0.0 0.088 12.0 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4317) Ribosomal_S10 PF00338.22 gi|242399535|ref|YP_002994960.1| - 4.8e-28 97.3 0.1 5.6e-28 97.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|242399535|ref|YP_002994960.1| - 0.031 15.1 0.0 0.056 14.3 0.0 1.4 1 0 0 1 1 1 0 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|242399536|ref|YP_002994961.1| - 2.3e-58 196.9 0.1 3.2e-58 196.5 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|242399536|ref|YP_002994961.1| - 4.8e-39 133.1 0.1 1e-38 132.0 0.1 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|242399536|ref|YP_002994961.1| - 5.4e-18 65.1 2.8 9.1e-17 61.2 0.5 2.9 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|242399536|ref|YP_002994961.1| - 4e-05 23.7 0.1 0.00016 21.7 0.1 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|242399536|ref|YP_002994961.1| - 0.013 15.0 0.3 0.1 12.1 0.1 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|242399536|ref|YP_002994961.1| - 0.073 13.1 0.1 11 6.1 0.0 2.8 2 1 1 3 3 3 0 Dynamin family GTP_EFTU_D4 PF14578.6 gi|242399536|ref|YP_002994961.1| - 0.084 12.8 0.4 0.25 11.2 0.4 1.8 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Transglut_core PF01841.19 gi|242399537|ref|YP_002994962.1| - 0.01 16.3 0.0 0.014 15.9 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.12 gi|242399537|ref|YP_002994962.1| - 0.11 12.0 0.1 0.14 11.7 0.1 1.2 1 0 0 1 1 1 0 Transglutaminase-like domain HV_small_capsid PF17086.5 gi|242399537|ref|YP_002994962.1| - 0.13 12.6 0.5 7.3 7.0 0.0 2.7 2 1 1 3 3 3 0 Small capsid protein of Herpesviridae MFS_1 PF07690.16 gi|242399538|ref|YP_002994963.1| - 1.6e-32 112.9 30.5 1.6e-32 112.9 30.5 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|242399538|ref|YP_002994963.1| - 1.7e-07 30.4 11.1 1.7e-07 30.4 11.1 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter DUF2985 PF11204.8 gi|242399538|ref|YP_002994963.1| - 0.13 12.4 6.3 0.14 12.4 1.7 3.2 2 2 0 2 2 2 0 Protein of unknown function (DUF2985) Radical_SAM PF04055.21 gi|242399539|ref|YP_002994964.1| - 1.7e-20 74.1 0.0 2.5e-20 73.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|242399539|ref|YP_002994964.1| - 1.9e-07 31.5 0.1 5.7e-07 30.0 0.1 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|242399539|ref|YP_002994964.1| - 4.3e-06 27.1 1.3 2.4e-05 24.6 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|242399539|ref|YP_002994964.1| - 8.7e-06 25.9 0.0 1.8e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|242399539|ref|YP_002994964.1| - 7.7 6.8 6.4 6.2 7.1 1.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain PqqD PF05402.12 gi|242399540|ref|YP_002994965.1| - 0.00017 21.8 0.1 0.00019 21.6 0.1 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) YrhC PF14143.6 gi|242399542|ref|YP_002994967.1| - 0.14 12.3 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 YrhC-like protein T2SSE PF00437.20 gi|242399543|ref|YP_002994968.1| - 3.6e-08 32.8 0.1 4.9e-08 32.4 0.1 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|242399543|ref|YP_002994968.1| - 0.00089 19.7 0.0 0.0012 19.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Kinase-PPPase PF03618.14 gi|242399543|ref|YP_002994968.1| - 0.0019 18.0 0.9 0.5 10.1 0.1 2.1 2 0 0 2 2 2 2 Kinase/pyrophosphorylase AAA_25 PF13481.6 gi|242399543|ref|YP_002994968.1| - 0.0025 17.4 0.6 0.047 13.3 0.0 2.1 1 1 1 2 2 2 1 AAA domain CPT PF07931.12 gi|242399543|ref|YP_002994968.1| - 0.003 17.4 0.0 0.0047 16.8 0.0 1.3 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein ABC_tran PF00005.27 gi|242399543|ref|YP_002994968.1| - 0.0053 17.3 0.0 0.0087 16.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter Creatinase_N_2 PF16189.5 gi|242399543|ref|YP_002994968.1| - 0.0082 16.2 0.2 0.015 15.4 0.2 1.5 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain AAA_5 PF07728.14 gi|242399543|ref|YP_002994968.1| - 0.018 15.0 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|242399543|ref|YP_002994968.1| - 0.019 15.2 0.0 0.044 14.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain DMRL_synthase PF00885.19 gi|242399543|ref|YP_002994968.1| - 0.031 14.1 0.0 0.054 13.3 0.0 1.5 1 0 0 1 1 1 0 6,7-dimethyl-8-ribityllumazine synthase AAA_18 PF13238.6 gi|242399543|ref|YP_002994968.1| - 0.047 14.2 0.3 0.11 13.1 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|242399543|ref|YP_002994968.1| - 0.048 13.7 0.8 0.11 12.5 0.8 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|242399543|ref|YP_002994968.1| - 0.075 13.1 0.2 0.16 12.1 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase CooT PF10133.9 gi|242399543|ref|YP_002994968.1| - 0.078 13.3 0.3 1.6 9.1 0.1 2.6 2 0 0 2 2 2 0 CO dehydrogenase accessory protein CooT DUF4423 PF14394.6 gi|242399543|ref|YP_002994968.1| - 0.082 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) FtsK_SpoIIIE PF01580.18 gi|242399543|ref|YP_002994968.1| - 0.092 12.1 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_29 PF13555.6 gi|242399543|ref|YP_002994968.1| - 0.093 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|242399543|ref|YP_002994968.1| - 0.095 12.2 0.3 1.8 8.0 0.0 2.6 1 1 2 3 3 3 0 P-loop containing dynein motor region Aminotran_5 PF00266.19 gi|242399544|ref|YP_002994969.1| - 1.5e-36 126.1 0.0 1.8e-36 125.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|242399544|ref|YP_002994969.1| - 6.8e-08 32.1 0.0 1.2e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|242399544|ref|YP_002994969.1| - 3.4e-07 29.1 0.0 5.1e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GDC-P PF02347.16 gi|242399544|ref|YP_002994969.1| - 9.4e-06 24.7 0.0 1.4e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|242399544|ref|YP_002994969.1| - 0.00087 18.6 0.0 0.0023 17.2 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Peptidase_C26 PF07722.13 gi|242399545|ref|YP_002994970.1| - 3.1e-46 157.8 0.0 3.7e-46 157.6 0.0 1.0 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.28 gi|242399545|ref|YP_002994970.1| - 3.8e-18 65.9 0.0 7.9e-18 64.9 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|242399545|ref|YP_002994970.1| - 0.00038 20.1 0.0 0.0009 18.9 0.0 1.8 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Ccdc124 PF06244.12 gi|242399545|ref|YP_002994970.1| - 1.4 9.5 3.9 11 6.6 2.1 2.1 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 124 /Oxs1 AtuA PF07287.11 gi|242399546|ref|YP_002994971.1| - 1.6e-31 109.3 0.0 2e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 Acyclic terpene utilisation family protein AtuA DUF4387 PF14330.6 gi|242399547|ref|YP_002994972.1| - 1.7e-35 121.6 0.0 1.9e-35 121.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4387) DcuC PF03606.15 gi|242399548|ref|YP_002994973.1| - 1.1e-88 297.7 18.7 1.4e-88 297.4 18.7 1.0 1 0 0 1 1 1 1 C4-dicarboxylate anaerobic carrier ABG_transport PF03806.13 gi|242399548|ref|YP_002994973.1| - 1.3e-10 40.2 16.1 3.2e-08 32.3 5.3 2.3 2 0 0 2 2 2 2 AbgT putative transporter family Na_H_antiporter PF03553.14 gi|242399548|ref|YP_002994973.1| - 2.3e-08 33.6 27.5 1e-07 31.5 14.4 2.2 1 1 1 2 2 2 2 Na+/H+ antiporter family SCFA_trans PF02667.14 gi|242399548|ref|YP_002994973.1| - 4.1e-07 29.4 7.4 4.1e-07 29.4 7.4 2.1 2 0 0 2 2 2 1 Short chain fatty acid transporter OATP PF03137.20 gi|242399548|ref|YP_002994973.1| - 0.031 12.6 0.1 0.06 11.6 0.1 1.5 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family Claudin_3 PF06653.11 gi|242399548|ref|YP_002994973.1| - 0.096 12.6 7.0 1.4 8.8 0.1 3.7 4 0 0 4 4 4 0 Tight junction protein, Claudin-like Ala_racemase_N PF01168.20 gi|242399549|ref|YP_002994974.1| - 1.3e-19 70.8 0.0 1.5e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain GEP5 PF17053.5 gi|242399549|ref|YP_002994974.1| - 0.14 12.0 0.1 0.39 10.5 0.0 1.6 2 0 0 2 2 2 0 Genetic interactor of prohibitin 5 NRD1_2 PF01995.16 gi|242399550|ref|YP_002994975.1| - 5.6e-56 189.5 2.5 7.5e-56 189.1 2.5 1.2 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|242399550|ref|YP_002994975.1| - 3.7e-16 58.8 1.6 1e-15 57.4 0.2 2.4 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|242399550|ref|YP_002994975.1| - 0.00049 20.1 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|242399550|ref|YP_002994975.1| - 0.0016 18.3 0.0 0.012 15.6 0.0 2.6 2 1 0 2 2 2 1 MarR family Ribosomal_L16 PF00252.18 gi|242399551|ref|YP_002994976.1| - 6.3e-32 110.4 0.1 7.9e-32 110.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Peripla_BP_2 PF01497.18 gi|242399552|ref|YP_002994977.1| - 1.9e-43 148.7 0.1 2.4e-43 148.4 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Mem_trans PF03547.18 gi|242399553|ref|YP_002994978.1| - 0.25 9.7 2.4 0.28 9.5 2.4 1.0 1 0 0 1 1 1 0 Membrane transport protein PhoQ_Sensor PF08918.10 gi|242399553|ref|YP_002994978.1| - 0.62 9.9 2.8 0.64 9.8 2.8 1.0 1 0 0 1 1 1 0 PhoQ Sensor DUF2207 PF09972.9 gi|242399553|ref|YP_002994978.1| - 1.1 7.9 4.4 1.1 8.0 4.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) UDG PF03167.19 gi|242399554|ref|YP_002994979.1| - 5.1e-21 75.3 0.0 7.9e-21 74.7 0.0 1.3 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF4918 PF16265.5 gi|242399554|ref|YP_002994979.1| - 0.051 13.1 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4918) PhosphMutase PF10143.9 gi|242399555|ref|YP_002994980.1| - 6.3e-54 182.4 0.0 1.1e-53 181.6 0.0 1.4 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|242399555|ref|YP_002994980.1| - 7.1e-49 166.4 0.0 8.4e-49 166.2 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|242399555|ref|YP_002994980.1| - 1.2e-10 41.5 0.0 1.2e-08 35.0 0.0 2.1 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|242399555|ref|YP_002994980.1| - 0.00086 18.8 0.0 0.097 12.0 0.0 2.3 2 0 0 2 2 2 2 Sulfatase Alk_phosphatase PF00245.20 gi|242399555|ref|YP_002994980.1| - 0.0034 16.4 0.1 0.0063 15.5 0.1 1.5 1 0 0 1 1 1 1 Alkaline phosphatase EF_TS PF00889.19 gi|242399555|ref|YP_002994980.1| - 0.11 12.0 0.1 0.42 10.2 0.0 1.8 2 0 0 2 2 2 0 Elongation factor TS Wx5_PLAF3D7 PF09688.10 gi|242399556|ref|YP_002994981.1| - 0.061 13.3 0.0 0.061 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (Wx5_PLAF3D7) DER1 PF04511.15 gi|242399556|ref|YP_002994981.1| - 0.12 12.2 0.9 0.12 12.3 0.9 1.0 1 0 0 1 1 1 0 Der1-like family HIT PF01230.23 gi|242399557|ref|YP_002994982.1| - 1.8e-14 54.3 0.0 2.8e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|242399557|ref|YP_002994982.1| - 7.6e-07 29.6 0.1 1.3e-06 28.8 0.0 1.4 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|242399557|ref|YP_002994982.1| - 0.00042 20.2 0.0 0.00069 19.5 0.0 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Na_H_antiporter PF03553.14 gi|242399558|ref|YP_002994983.1| - 8.8e-77 258.3 29.9 8.8e-77 258.3 29.9 2.2 2 0 0 2 2 2 1 Na+/H+ antiporter family Thy1 PF02511.15 gi|242399559|ref|YP_002994984.1| - 2.2e-61 207.0 1.2 2.8e-61 206.6 1.2 1.0 1 0 0 1 1 1 1 Thymidylate synthase complementing protein OTCace PF00185.24 gi|242399560|ref|YP_002994985.1| - 8.4e-65 217.6 0.2 1.2e-64 217.2 0.2 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|242399560|ref|YP_002994985.1| - 4.2e-51 172.9 0.0 1.2e-50 171.4 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HAD_2 PF13419.6 gi|242399561|ref|YP_002994986.1| - 2e-15 57.3 0.2 3e-15 56.7 0.2 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|242399561|ref|YP_002994986.1| - 3.1e-10 40.7 0.1 4.2e-10 40.3 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|242399561|ref|YP_002994986.1| - 2.2e-05 24.5 0.0 4e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like dCache_2 PF08269.11 gi|242399561|ref|YP_002994986.1| - 0.035 13.3 0.2 0.048 12.8 0.2 1.1 1 0 0 1 1 1 0 Cache domain DUF1451 PF07295.11 gi|242399561|ref|YP_002994986.1| - 0.11 12.5 0.4 0.17 11.9 0.4 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain Prok-RING_1 PF14446.6 gi|242399562|ref|YP_002994987.1| - 0.052 13.5 0.5 0.081 12.9 0.5 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.10 gi|242399562|ref|YP_002994987.1| - 0.088 12.5 1.3 0.15 11.8 1.3 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-C2H2_3 PF13878.6 gi|242399562|ref|YP_002994987.1| - 0.11 12.3 0.2 0.7 9.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Rubredoxin PF00301.20 gi|242399562|ref|YP_002994987.1| - 0.17 11.9 1.0 8.2 6.5 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin PolC_DP2 PF03833.13 gi|242399563|ref|YP_002994988.1| - 0 1232.3 0.1 0 1231.3 0.1 1.5 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|242399563|ref|YP_002994988.1| - 1.1e-09 38.3 2.4 1.1e-09 38.3 2.4 2.7 2 0 0 2 2 2 1 Intein splicing domain zinc-ribbons_6 PF07191.12 gi|242399563|ref|YP_002994988.1| - 0.00063 19.7 11.1 0.36 10.8 4.5 3.3 2 1 1 3 3 3 3 zinc-ribbons DZR PF12773.7 gi|242399563|ref|YP_002994988.1| - 0.12 12.4 15.8 0.91 9.6 8.6 2.6 2 0 0 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|242399563|ref|YP_002994988.1| - 0.3 11.1 12.9 2.6 8.1 0.1 3.6 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-CHY PF05495.12 gi|242399563|ref|YP_002994988.1| - 1.1 9.9 9.5 16 6.1 5.6 2.7 2 1 0 2 2 2 0 CHY zinc finger Zn-ribbon_8 PF09723.10 gi|242399563|ref|YP_002994988.1| - 2.3 8.4 23.3 2.7 8.2 1.8 3.9 3 1 0 3 3 3 0 Zinc ribbon domain DNA_pol_E_B PF04042.16 gi|242399564|ref|YP_002994989.1| - 2.1e-15 56.7 0.0 3.5e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|242399564|ref|YP_002994989.1| - 1.9e-11 44.9 0.3 3.5e-11 44.0 0.3 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|242399564|ref|YP_002994989.1| - 4.6e-06 26.9 0.0 1.2e-05 25.6 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF4974 PF16344.5 gi|242399564|ref|YP_002994989.1| - 0.071 13.1 0.3 2.5 8.2 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4974) DUF2072 PF09845.9 gi|242399564|ref|YP_002994989.1| - 3.8 7.8 6.6 13 6.0 6.6 2.0 1 1 0 1 1 1 0 Zn-ribbon containing protein Cdc6_C PF09079.11 gi|242399565|ref|YP_002994990.1| - 1.9e-25 88.7 0.1 4.6e-25 87.4 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|242399565|ref|YP_002994990.1| - 1.2e-09 38.8 0.0 1.5e-08 35.2 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|242399565|ref|YP_002994990.1| - 5.2e-09 36.6 0.1 2.1e-08 34.7 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|242399565|ref|YP_002994990.1| - 3.1e-08 34.0 0.0 2.1e-07 31.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|242399565|ref|YP_002994990.1| - 5.2e-05 22.7 0.0 0.00013 21.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial TniB protein NB-ARC PF00931.22 gi|242399565|ref|YP_002994990.1| - 0.00022 20.5 0.1 0.00046 19.5 0.1 1.5 1 0 0 1 1 1 1 NB-ARC domain ATPase_2 PF01637.18 gi|242399565|ref|YP_002994990.1| - 0.00033 20.6 3.2 0.0017 18.3 3.2 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Kinesin PF00225.23 gi|242399565|ref|YP_002994990.1| - 0.0021 17.1 0.0 0.0033 16.4 0.0 1.3 1 0 0 1 1 1 1 Kinesin motor domain DEAD PF00270.29 gi|242399565|ref|YP_002994990.1| - 0.0046 16.7 0.9 1.1 9.0 0.0 2.4 1 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_32 PF13654.6 gi|242399565|ref|YP_002994990.1| - 0.0058 15.5 0.6 0.032 13.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|242399565|ref|YP_002994990.1| - 0.0092 15.3 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Microtub_bd PF16796.5 gi|242399565|ref|YP_002994990.1| - 0.0097 15.8 0.0 0.026 14.5 0.0 1.8 1 0 0 1 1 1 1 Microtubule binding AAA_24 PF13479.6 gi|242399565|ref|YP_002994990.1| - 0.011 15.4 0.5 0.024 14.4 0.5 1.6 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|242399565|ref|YP_002994990.1| - 0.011 15.8 0.0 0.066 13.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|242399565|ref|YP_002994990.1| - 0.012 14.8 0.0 0.047 12.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_assoc_2 PF16193.5 gi|242399565|ref|YP_002994990.1| - 0.017 15.4 0.3 0.071 13.5 0.0 2.1 2 1 0 2 2 2 0 AAA C-terminal domain NACHT PF05729.12 gi|242399565|ref|YP_002994990.1| - 0.03 14.3 0.0 0.091 12.7 0.0 1.9 1 1 0 1 1 1 0 NACHT domain DUF87 PF01935.17 gi|242399565|ref|YP_002994990.1| - 0.035 14.2 0.1 0.15 12.1 0.0 2.1 2 0 0 2 2 2 0 Helicase HerA, central domain Sigma54_activat PF00158.26 gi|242399565|ref|YP_002994990.1| - 0.036 13.8 0.0 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain PIF1 PF05970.14 gi|242399565|ref|YP_002994990.1| - 0.036 13.2 0.0 0.072 12.3 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase RNA_helicase PF00910.22 gi|242399565|ref|YP_002994990.1| - 0.083 13.3 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|242399565|ref|YP_002994990.1| - 0.11 12.0 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|242399565|ref|YP_002994990.1| - 0.12 12.9 0.4 1.2 9.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|242399566|ref|YP_002994991.1| - 5.2e-139 463.3 1.3 6.5e-139 463.0 1.3 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|242399566|ref|YP_002994991.1| - 1.8e-19 69.6 0.1 6.6e-19 67.8 0.1 2.1 2 0 0 2 2 1 1 TIP49 AAA-lid domain AAA PF00004.29 gi|242399566|ref|YP_002994991.1| - 1.3e-11 45.0 0.1 3.7e-07 30.6 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|242399566|ref|YP_002994991.1| - 1e-08 35.1 0.3 1.8e-05 24.5 0.1 2.3 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|242399566|ref|YP_002994991.1| - 7.8e-05 23.0 0.0 0.21 11.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|242399566|ref|YP_002994991.1| - 0.00011 22.6 0.2 0.00067 20.1 0.2 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|242399566|ref|YP_002994991.1| - 0.0002 21.4 0.1 0.0046 17.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ResIII PF04851.15 gi|242399566|ref|YP_002994991.1| - 0.00044 20.3 0.1 0.027 14.5 0.1 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|242399566|ref|YP_002994991.1| - 0.00096 18.6 1.0 0.025 14.0 0.3 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|242399566|ref|YP_002994991.1| - 0.0011 18.5 0.1 0.0034 16.9 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|242399566|ref|YP_002994991.1| - 0.0016 18.2 0.2 0.099 12.3 0.1 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|242399566|ref|YP_002994991.1| - 0.0022 18.4 0.6 0.022 15.1 0.6 2.1 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|242399566|ref|YP_002994991.1| - 0.0081 15.5 0.2 0.017 14.4 0.2 1.4 1 0 0 1 1 1 1 Zeta toxin TsaE PF02367.17 gi|242399566|ref|YP_002994991.1| - 0.01 15.8 1.0 0.022 14.7 0.4 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|242399566|ref|YP_002994991.1| - 0.011 16.2 2.0 0.014 15.9 0.5 1.9 2 1 0 2 2 1 0 AAA domain AAA_33 PF13671.6 gi|242399566|ref|YP_002994991.1| - 0.012 15.8 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|242399566|ref|YP_002994991.1| - 0.013 16.0 0.1 0.027 15.0 0.1 1.5 1 0 0 1 1 1 0 ABC transporter AAA_25 PF13481.6 gi|242399566|ref|YP_002994991.1| - 0.017 14.7 0.0 0.035 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|242399566|ref|YP_002994991.1| - 0.028 14.8 0.0 0.055 13.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.17 gi|242399566|ref|YP_002994991.1| - 0.038 13.7 0.1 0.076 12.7 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein T2SSE PF00437.20 gi|242399566|ref|YP_002994991.1| - 0.038 13.0 1.3 0.16 11.0 0.3 2.1 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA_17 PF13207.6 gi|242399566|ref|YP_002994991.1| - 0.039 14.4 1.8 0.13 12.7 0.1 2.7 4 0 0 4 4 2 0 AAA domain DnaB_C PF03796.15 gi|242399566|ref|YP_002994991.1| - 0.041 13.2 0.0 0.096 12.0 0.0 1.6 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Bac_DnaA PF00308.18 gi|242399566|ref|YP_002994991.1| - 0.043 13.7 0.3 0.9 9.3 0.1 2.4 2 0 0 2 2 2 0 Bacterial dnaA protein NACHT PF05729.12 gi|242399566|ref|YP_002994991.1| - 0.054 13.4 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|242399566|ref|YP_002994991.1| - 0.059 13.9 0.1 0.22 12.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|242399566|ref|YP_002994991.1| - 0.073 12.8 3.0 0.38 10.5 1.2 2.5 2 1 0 2 2 2 0 DEAD/DEAH box helicase IPT PF01745.16 gi|242399566|ref|YP_002994991.1| - 0.081 12.3 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 Isopentenyl transferase DNA_pol3_delta PF06144.13 gi|242399566|ref|YP_002994991.1| - 0.11 12.3 0.1 0.28 11.0 0.0 1.6 2 0 0 2 2 1 0 DNA polymerase III, delta subunit zf-H3C2 PF16721.5 gi|242399566|ref|YP_002994991.1| - 0.13 12.6 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 Zinc-finger like, probable DNA-binding Rad17 PF03215.15 gi|242399566|ref|YP_002994991.1| - 0.14 12.1 0.0 0.5 10.3 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|242399566|ref|YP_002994991.1| - 0.35 10.6 1.1 0.76 9.6 1.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Gar1 PF04410.14 gi|242399567|ref|YP_002994992.1| - 1.3e-09 38.1 0.0 1.4e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|242399568|ref|YP_002994993.1| - 4.7e-37 125.9 1.1 6.4e-18 64.6 0.2 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Sigma70_r4 PF04545.16 gi|242399568|ref|YP_002994993.1| - 0.00025 20.5 0.8 0.0013 18.2 0.1 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 Cyclin_N PF00134.23 gi|242399568|ref|YP_002994993.1| - 0.00068 19.4 0.0 0.31 10.8 0.0 2.2 1 1 1 2 2 2 2 Cyclin, N-terminal domain HTH_Tnp_ISL3 PF13542.6 gi|242399568|ref|YP_002994993.1| - 0.02 14.3 0.2 0.072 12.5 0.2 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.22 gi|242399568|ref|YP_002994993.1| - 0.045 13.8 0.3 0.45 10.6 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|242399568|ref|YP_002994993.1| - 0.073 12.8 0.7 0.23 11.2 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 RB_B PF01857.20 gi|242399568|ref|YP_002994993.1| - 0.093 12.8 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain Cyclin_C PF02984.19 gi|242399568|ref|YP_002994993.1| - 0.1 12.7 0.0 7 6.8 0.0 2.2 1 1 1 2 2 2 0 Cyclin, C-terminal domain UMPH-1 PF05822.12 gi|242399568|ref|YP_002994993.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_AsnC-type PF13404.6 gi|242399568|ref|YP_002994993.1| - 0.21 11.5 3.5 0.26 11.2 0.1 2.9 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Metallophos_2 PF12850.7 gi|242399569|ref|YP_002994994.1| - 1.3e-28 100.2 0.0 1.5e-28 100.0 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|242399569|ref|YP_002994994.1| - 2.9e-07 31.2 0.9 0.00043 20.8 0.1 2.5 2 1 1 3 3 3 2 Calcineurin-like phosphoesterase DUF4940 PF16298.5 gi|242399569|ref|YP_002994994.1| - 0.0075 15.9 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4940) CBFD_NFYB_HMF PF00808.23 gi|242399570|ref|YP_002994995.1| - 4.1e-20 71.8 2.9 4.5e-20 71.7 2.9 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|242399570|ref|YP_002994995.1| - 5.1e-10 39.8 0.4 6.5e-10 39.5 0.4 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 gi|242399570|ref|YP_002994995.1| - 1.5e-07 31.5 0.6 1.6e-07 31.4 0.6 1.2 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-T_C PF15511.6 gi|242399570|ref|YP_002994995.1| - 1.4e-05 25.2 0.1 1.5e-05 25.1 0.1 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|242399570|ref|YP_002994995.1| - 1.8e-05 25.1 0.1 2e-05 24.9 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|242399570|ref|YP_002994995.1| - 0.00023 21.2 0.0 0.00026 21.1 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID-18kDa PF02269.16 gi|242399570|ref|YP_002994995.1| - 0.00049 20.1 0.0 0.00053 19.9 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit TFIID_20kDa PF03847.13 gi|242399570|ref|YP_002994995.1| - 0.0011 19.4 0.1 0.0013 19.2 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A DUF1931 PF09123.11 gi|242399570|ref|YP_002994995.1| - 0.0017 18.5 0.6 0.0021 18.2 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Bromo_TP PF07524.13 gi|242399570|ref|YP_002994995.1| - 0.13 12.3 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated CaM_bdg_C0 PF10562.9 gi|242399570|ref|YP_002994995.1| - 0.43 10.7 0.4 0.43 10.7 0.4 2.1 1 1 0 2 2 2 0 Calmodulin-binding domain C0 of NMDA receptor NR1 subunit RuBisCO_large PF00016.20 gi|242399571|ref|YP_002994996.1| - 5.1e-97 324.7 0.0 6.2e-97 324.4 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|242399571|ref|YP_002994996.1| - 2.9e-44 150.1 0.1 9.2e-44 148.5 0.0 1.8 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF697 PF05128.12 gi|242399571|ref|YP_002994996.1| - 0.0087 15.8 0.1 0.13 12.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF697) LigA PF07746.11 gi|242399571|ref|YP_002994996.1| - 0.012 15.7 0.1 0.61 10.3 0.0 2.5 2 0 0 2 2 2 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit 4HFCP_synth PF04476.13 gi|242399571|ref|YP_002994996.1| - 0.058 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 4-HFC-P synthase TK PF00265.18 gi|242399572|ref|YP_002994997.1| - 1.6e-53 181.2 0.0 1.8e-53 181.0 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_14 PF13173.6 gi|242399572|ref|YP_002994997.1| - 0.0071 16.4 0.1 0.014 15.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain zf-C4_ClpX PF06689.13 gi|242399572|ref|YP_002994997.1| - 0.019 14.8 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 ClpX C4-type zinc finger tRNA_SAD PF07973.14 gi|242399573|ref|YP_002994998.1| - 0.00052 20.1 0.1 0.001 19.1 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Semialdhyde_dh PF01118.24 gi|242399574|ref|YP_002994999.1| - 4.6e-30 104.5 0.0 8.1e-30 103.8 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|242399574|ref|YP_002994999.1| - 1.3e-28 100.3 0.0 1.9e-28 99.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|242399574|ref|YP_002994999.1| - 0.0067 16.5 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|242399574|ref|YP_002994999.1| - 0.019 15.2 0.0 0.033 14.5 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Gp_dh_C PF02800.20 gi|242399574|ref|YP_002994999.1| - 0.028 14.0 0.1 0.077 12.6 0.0 1.7 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GFO_IDH_MocA PF01408.22 gi|242399574|ref|YP_002994999.1| - 0.044 14.6 0.0 0.079 13.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.16 gi|242399574|ref|YP_002994999.1| - 0.073 13.8 0.0 0.18 12.6 0.0 1.7 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase PALP PF00291.25 gi|242399575|ref|YP_002995000.1| - 6.6e-81 271.9 0.0 7.6e-81 271.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|242399575|ref|YP_002995000.1| - 0.0048 17.0 0.0 17 5.6 0.0 3.2 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GHMP_kinases_C PF08544.13 gi|242399576|ref|YP_002995001.1| - 1.8e-14 53.8 0.0 4.5e-14 52.6 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|242399576|ref|YP_002995001.1| - 1.8e-13 50.5 0.2 4.4e-13 49.2 0.2 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain AA_kinase PF00696.28 gi|242399577|ref|YP_002995002.1| - 4.1e-46 157.5 0.0 5e-46 157.3 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Phage_rep_org_N PF09681.10 gi|242399578|ref|YP_002995003.1| - 0.0084 16.0 0.0 0.0097 15.8 0.0 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HisKA PF00512.25 gi|242399578|ref|YP_002995003.1| - 0.0093 16.0 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DUF1533 PF07550.11 gi|242399579|ref|YP_002995004.1| - 0.019 14.8 0.1 0.031 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1533) Transketolase_N PF00456.21 gi|242399579|ref|YP_002995004.1| - 0.12 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain DUF4147 PF13660.6 gi|242399580|ref|YP_002995005.1| - 2.6e-81 272.5 0.1 3.5e-81 272.1 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|242399580|ref|YP_002995005.1| - 8.9e-36 122.4 0.4 1.9e-35 121.3 0.4 1.6 1 0 0 1 1 1 1 MOFRL family NBD_C PF17042.5 gi|242399580|ref|YP_002995005.1| - 0.045 14.3 0.1 0.25 11.8 0.0 2.2 3 0 0 3 3 3 0 Nucleotide-binding C-terminal domain GHMP_kinases_C PF08544.13 gi|242399580|ref|YP_002995005.1| - 0.11 12.8 0.1 2.4 8.6 0.0 2.7 2 0 0 2 2 2 0 GHMP kinases C terminal DUF371 PF04027.13 gi|242399581|ref|YP_002995006.1| - 9.3e-51 171.3 1.6 1e-50 171.1 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) OapA PF04225.12 gi|242399581|ref|YP_002995006.1| - 0.072 13.2 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Opacity-associated protein A LysM-like domain Ribosomal_S17e PF00833.18 gi|242399582|ref|YP_002995007.1| - 1.4e-16 60.5 0.4 1.6e-16 60.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal S17 HTH_5 PF01022.20 gi|242399583|ref|YP_002995008.1| - 5.6e-14 51.7 0.2 1.4e-13 50.5 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|242399583|ref|YP_002995008.1| - 4e-11 42.8 0.2 9.9e-11 41.5 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain ArsR PF09824.9 gi|242399583|ref|YP_002995008.1| - 0.00022 20.9 0.1 0.039 13.5 0.0 2.3 2 0 0 2 2 2 1 ArsR transcriptional regulator HTH_11 PF08279.12 gi|242399583|ref|YP_002995008.1| - 0.0003 20.7 0.2 0.025 14.5 0.1 2.4 2 0 0 2 2 2 1 HTH domain PadR PF03551.14 gi|242399583|ref|YP_002995008.1| - 0.00042 20.2 2.4 0.00062 19.7 0.1 2.5 3 1 0 3 3 2 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|242399583|ref|YP_002995008.1| - 0.00059 19.7 0.1 0.0016 18.3 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Apolipoprotein PF01442.18 gi|242399583|ref|YP_002995008.1| - 0.00065 19.6 1.3 0.0009 19.2 1.3 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain HTH_24 PF13412.6 gi|242399583|ref|YP_002995008.1| - 0.0022 17.5 4.4 0.0051 16.3 1.5 3.0 3 1 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|242399583|ref|YP_002995008.1| - 0.0029 17.4 0.1 0.016 15.0 0.1 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|242399583|ref|YP_002995008.1| - 0.012 15.6 0.1 0.15 12.0 0.0 2.3 2 0 0 2 2 2 0 MarR family HxlR PF01638.17 gi|242399583|ref|YP_002995008.1| - 0.013 15.4 3.5 0.088 12.7 0.1 2.7 3 0 0 3 3 3 0 HxlR-like helix-turn-helix SRP1_TIP1 PF00660.17 gi|242399583|ref|YP_002995008.1| - 0.022 14.8 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 Seripauperin and TIP1 family HTH_27 PF13463.6 gi|242399583|ref|YP_002995008.1| - 0.027 15.0 0.0 0.062 13.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|242399583|ref|YP_002995008.1| - 0.04 13.7 0.1 0.2 11.5 0.0 2.2 3 0 0 3 3 3 0 HTH DNA binding domain IF2_N PF04760.15 gi|242399583|ref|YP_002995008.1| - 0.049 13.5 3.4 0.23 11.3 0.1 3.1 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region DUF613 PF04764.12 gi|242399583|ref|YP_002995008.1| - 0.052 13.7 0.4 0.09 12.9 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF613) Geminin PF07412.12 gi|242399583|ref|YP_002995008.1| - 0.064 13.0 5.5 0.11 12.3 5.5 1.3 1 0 0 1 1 1 0 Geminin Topoisom_I PF01028.20 gi|242399583|ref|YP_002995008.1| - 0.11 11.8 0.7 0.16 11.2 0.7 1.2 1 0 0 1 1 1 0 Eukaryotic DNA topoisomerase I, catalytic core PCRF PF03462.18 gi|242399583|ref|YP_002995008.1| - 0.2 11.5 5.1 0.28 11.0 5.1 1.2 1 0 0 1 1 1 0 PCRF domain Mgr1 PF08602.10 gi|242399583|ref|YP_002995008.1| - 0.2 10.4 1.9 0.27 10.0 1.9 1.1 1 0 0 1 1 1 0 Mgr1-like, i-AAA protease complex subunit DDRGK PF09756.9 gi|242399583|ref|YP_002995008.1| - 0.25 10.9 8.5 1 8.9 0.1 3.0 2 1 1 3 3 3 0 DDRGK domain NYD-SP28 PF14772.6 gi|242399583|ref|YP_002995008.1| - 0.44 10.6 8.7 3.6 7.7 0.7 2.9 2 1 1 3 3 3 0 Sperm tail Com_YlbF PF06133.11 gi|242399583|ref|YP_002995008.1| - 2 9.1 10.9 1.9 9.1 8.6 1.7 1 1 0 1 1 1 0 Control of competence regulator ComK, YlbF/YmcA TFA2_Winged_2 PF18121.1 gi|242399583|ref|YP_002995008.1| - 3.9 7.2 6.9 0.87 9.3 0.5 2.7 3 1 0 3 3 2 0 TFA2 Winged helix domain 2 Lactamase_B PF00753.27 gi|242399584|ref|YP_002995009.1| - 8e-30 104.3 0.8 9.4e-30 104.1 0.8 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|242399584|ref|YP_002995009.1| - 1.9e-11 43.9 0.0 2.6e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|242399584|ref|YP_002995009.1| - 3.2e-06 26.8 0.1 4.2e-06 26.4 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|242399584|ref|YP_002995009.1| - 0.051 13.0 0.0 0.08 12.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain DUF3683 PF12447.8 gi|242399584|ref|YP_002995009.1| - 0.11 12.6 0.0 16 5.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3683) ResIII PF04851.15 gi|242399585|ref|YP_002995010.1| - 2.1e-38 132.0 0.0 4.4e-38 131.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SWI2_SNF2 PF18766.1 gi|242399585|ref|YP_002995010.1| - 7.1e-21 74.9 0.0 1.4e-20 74.0 0.0 1.5 1 0 0 1 1 1 1 SWI2/SNF2 ATPase EcoEI_R_C PF08463.10 gi|242399585|ref|YP_002995010.1| - 2.7e-17 63.4 0.8 6.6e-17 62.1 0.8 1.7 1 0 0 1 1 1 1 EcoEI R protein C-terminal HSDR_N_2 PF13588.6 gi|242399585|ref|YP_002995010.1| - 4.8e-11 42.6 0.0 1.4e-10 41.1 0.0 1.8 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.14 gi|242399585|ref|YP_002995010.1| - 1.6e-09 38.0 0.0 4.2e-07 30.1 0.0 2.7 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Helicase_C PF00271.31 gi|242399585|ref|YP_002995010.1| - 1.8e-07 31.5 0.0 4.6e-07 30.2 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|242399585|ref|YP_002995010.1| - 2.8e-07 30.5 0.0 6.9e-06 25.9 0.0 2.8 3 1 0 3 3 3 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|242399585|ref|YP_002995010.1| - 0.0019 17.0 0.0 0.0052 15.5 0.0 1.6 2 0 0 2 2 2 1 SNF2 family N-terminal domain DUF2075 PF09848.9 gi|242399585|ref|YP_002995010.1| - 0.027 13.7 0.0 0.054 12.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|242399585|ref|YP_002995010.1| - 0.04 13.4 0.0 0.096 12.1 0.0 1.5 2 0 0 2 2 2 0 PhoH-like protein AAA_34 PF13872.6 gi|242399585|ref|YP_002995010.1| - 0.097 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 T2SSE PF00437.20 gi|242399585|ref|YP_002995010.1| - 0.099 11.7 0.0 0.22 10.5 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein N6_Mtase PF02384.16 gi|242399586|ref|YP_002995011.1| - 2.8e-64 217.4 0.0 3.7e-64 216.9 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase UPF0020 PF01170.18 gi|242399586|ref|YP_002995011.1| - 2.8e-12 46.8 0.0 7.8e-12 45.3 0.0 1.7 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 HsdM_N PF12161.8 gi|242399586|ref|YP_002995011.1| - 6.7e-11 43.0 0.2 6.7e-11 43.0 0.2 2.4 3 0 0 3 3 3 1 HsdM N-terminal domain MTS PF05175.14 gi|242399586|ref|YP_002995011.1| - 0.0011 18.5 0.1 0.0049 16.4 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|242399586|ref|YP_002995011.1| - 0.0045 16.6 0.0 0.02 14.6 0.0 2.0 1 1 0 1 1 1 1 Conserved hypothetical protein 95 N6_N4_Mtase PF01555.18 gi|242399586|ref|YP_002995011.1| - 0.0055 16.4 0.4 0.015 15.0 0.0 2.1 3 0 0 3 3 3 1 DNA methylase Methyltransf_31 PF13847.6 gi|242399586|ref|YP_002995011.1| - 0.045 13.5 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|242399586|ref|YP_002995011.1| - 0.072 12.7 0.1 0.19 11.3 0.1 1.8 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methylase_S PF01420.19 gi|242399587|ref|YP_002995012.1| - 1.6e-50 171.6 0.3 9.7e-32 110.5 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Metal_resist PF13801.6 gi|242399587|ref|YP_002995012.1| - 0.029 14.6 0.6 0.059 13.6 0.6 1.4 1 0 0 1 1 1 0 Heavy-metal resistance RAMA PF18755.1 gi|242399587|ref|YP_002995012.1| - 0.036 14.5 0.0 0.088 13.2 0.0 1.7 1 0 0 1 1 1 0 Restriction Enzyme Adenine Methylase Associated MRPL52 PF18699.1 gi|242399587|ref|YP_002995012.1| - 0.18 12.0 4.5 9.6 6.5 0.9 2.6 2 0 0 2 2 2 0 Mitoribosomal protein mL52 ERM PF00769.19 gi|242399587|ref|YP_002995012.1| - 6 6.6 9.8 6.4 6.5 4.6 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family EVE PF01878.18 gi|242399590|ref|YP_002995015.1| - 6.6e-27 94.3 0.9 7.4e-27 94.1 0.9 1.0 1 0 0 1 1 1 1 EVE domain Dev_Cell_Death PF10539.9 gi|242399590|ref|YP_002995015.1| - 7.7e-06 25.8 0.0 9.5e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Development and cell death domain ATPase_2 PF01637.18 gi|242399591|ref|YP_002995016.1| - 1e-17 64.8 0.2 3.2e-17 63.2 0.0 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|242399591|ref|YP_002995016.1| - 3e-08 33.7 0.0 0.001 19.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|242399591|ref|YP_002995016.1| - 1.5e-05 25.4 0.0 5.9e-05 23.5 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|242399591|ref|YP_002995016.1| - 0.0001 22.6 0.0 0.00045 20.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|242399591|ref|YP_002995016.1| - 0.0026 16.9 0.0 0.0044 16.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein HTH_12 PF08461.10 gi|242399591|ref|YP_002995016.1| - 0.027 14.4 0.2 0.067 13.1 0.2 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4373 PF14297.6 gi|242399591|ref|YP_002995016.1| - 0.071 13.9 0.0 0.47 11.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4373) Rrf2 PF02082.20 gi|242399591|ref|YP_002995016.1| - 0.096 13.0 0.3 8.6 6.8 0.0 2.5 2 1 0 2 2 2 0 Transcriptional regulator HTH_45 PF14947.6 gi|242399591|ref|YP_002995016.1| - 0.14 12.1 1.6 0.92 9.5 0.2 2.7 2 1 0 2 2 2 0 Winged helix-turn-helix Phage_holin_6_1 PF09682.10 gi|242399592|ref|YP_002995017.1| - 0.045 14.2 0.2 0.091 13.2 0.2 1.5 1 0 0 1 1 1 0 Bacteriophage holin of superfamily 6 (Holin_LLH) ThiS PF02597.20 gi|242399593|ref|YP_002995018.1| - 2.1e-12 47.5 0.1 2.4e-12 47.3 0.1 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|242399593|ref|YP_002995018.1| - 0.0059 16.9 0.1 0.0085 16.4 0.1 1.6 1 1 0 1 1 1 1 Urm1 (Ubiquitin related modifier) Collectrin PF16959.5 gi|242399593|ref|YP_002995018.1| - 0.029 14.2 0.0 0.032 14.0 0.0 1.1 1 0 0 1 1 1 0 Renal amino acid transporter AFOR_C PF01314.18 gi|242399594|ref|YP_002995019.1| - 5.4e-121 404.2 0.0 7e-121 403.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|242399594|ref|YP_002995019.1| - 5.4e-80 267.9 0.4 2.1e-79 266.0 0.3 1.9 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Methyltransf_24 PF13578.6 gi|242399595|ref|YP_002995020.1| - 1.8e-11 45.0 0.0 2.4e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|242399595|ref|YP_002995020.1| - 8.8e-05 21.8 0.0 0.00015 21.0 0.0 1.3 1 1 0 1 1 1 1 O-methyltransferase FmdA_AmdA PF03069.15 gi|242399596|ref|YP_002995021.1| - 9.1e-57 192.6 0.0 2.4e-55 187.9 0.0 2.0 1 1 0 1 1 1 1 Acetamidase/Formamidase family tRNA-synt_1g PF09334.11 gi|242399596|ref|YP_002995021.1| - 0.05 12.4 0.0 0.096 11.4 0.0 1.4 1 1 0 1 1 1 0 tRNA synthetases class I (M) DNA_RNApol_7kD PF03604.13 gi|242399596|ref|YP_002995021.1| - 0.069 12.8 0.9 0.14 11.8 0.9 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.6 gi|242399596|ref|YP_002995021.1| - 0.089 12.7 1.0 0.16 11.9 1.0 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.7 gi|242399596|ref|YP_002995021.1| - 0.16 12.0 0.3 0.29 11.2 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|242399596|ref|YP_002995021.1| - 0.24 10.9 2.8 6 6.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|242399596|ref|YP_002995021.1| - 1.2 9.3 3.7 5.5 7.2 3.8 1.9 1 1 1 2 2 2 0 Zinc ribbon domain DUF1097 PF06496.11 gi|242399597|ref|YP_002995022.1| - 1.8e-08 34.6 30.2 2.6e-08 34.1 30.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1097) YrhC PF14143.6 gi|242399597|ref|YP_002995022.1| - 0.14 12.3 4.5 0.22 11.6 0.7 2.3 1 1 1 2 2 2 0 YrhC-like protein Popeye PF04831.13 gi|242399597|ref|YP_002995022.1| - 0.17 12.0 5.4 0.29 11.3 5.4 1.4 1 0 0 1 1 1 0 Popeye protein conserved region PPDK_N PF01326.19 gi|242399598|ref|YP_002995023.1| - 2.9e-113 378.5 0.7 3.3e-113 378.3 0.7 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ThiS PF02597.20 gi|242399599|ref|YP_002995024.1| - 1.6e-06 28.6 0.0 1.9e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|242399599|ref|YP_002995024.1| - 0.028 14.8 1.1 0.37 11.2 1.1 2.0 1 1 0 1 1 1 0 Urm1 (Ubiquitin related modifier) XPC-binding PF09280.11 gi|242399599|ref|YP_002995024.1| - 0.075 12.8 0.1 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 XPC-binding domain DUF5017 PF16409.5 gi|242399599|ref|YP_002995024.1| - 0.11 12.0 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5017) Cyclase PF04199.13 gi|242399600|ref|YP_002995025.1| - 5.9e-42 143.1 0.0 8e-42 142.7 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase DUF348 PF03990.14 gi|242399600|ref|YP_002995025.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 G5-linked-Ubiquitin-like domain AFOR_C PF01314.18 gi|242399601|ref|YP_002995026.1| - 1.1e-90 304.4 0.0 1.5e-90 304.0 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|242399601|ref|YP_002995026.1| - 1.9e-77 259.6 0.1 2.7e-77 259.1 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Fer4 PF00037.27 gi|242399602|ref|YP_002995027.1| - 2.3e-16 58.8 27.9 3e-07 30.0 2.5 5.1 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|242399602|ref|YP_002995027.1| - 4e-13 48.8 30.9 2.5e-05 24.1 2.4 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|242399602|ref|YP_002995027.1| - 8.4e-13 48.3 46.4 5.1e-06 26.6 12.4 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|242399602|ref|YP_002995027.1| - 1.6e-12 47.8 27.6 9.2e-08 32.6 11.3 3.2 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|242399602|ref|YP_002995027.1| - 6.6e-12 45.4 13.4 6.6e-12 45.4 13.4 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242399602|ref|YP_002995027.1| - 2.5e-11 43.0 29.4 0.00012 22.0 2.9 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|242399602|ref|YP_002995027.1| - 8e-11 41.9 28.5 2.2e-07 30.9 10.9 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242399602|ref|YP_002995027.1| - 1.3e-09 38.0 29.3 0.00048 20.2 14.0 3.6 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|242399602|ref|YP_002995027.1| - 3e-09 37.7 25.4 0.093 13.7 5.7 4.4 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|242399602|ref|YP_002995027.1| - 8.5e-05 23.2 36.3 0.021 15.7 3.2 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|242399602|ref|YP_002995027.1| - 0.00041 20.6 32.6 0.0066 16.9 3.5 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|242399602|ref|YP_002995027.1| - 0.0012 19.3 28.4 0.007 16.8 7.4 3.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|242399602|ref|YP_002995027.1| - 0.0019 18.7 30.9 0.1 13.1 2.8 3.7 1 1 4 5 5 5 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|242399602|ref|YP_002995027.1| - 0.016 15.9 21.1 0.33 11.7 1.2 4.0 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|242399602|ref|YP_002995027.1| - 0.12 12.9 2.8 0.12 12.9 2.8 4.2 2 1 2 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|242399602|ref|YP_002995027.1| - 0.75 9.6 27.1 0.11 12.3 1.9 3.8 2 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFOR_C PF01314.18 gi|242399603|ref|YP_002995028.1| - 1.1e-112 376.9 0.0 1.7e-112 376.2 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|242399603|ref|YP_002995028.1| - 1.2e-65 221.1 0.8 1.7e-65 220.6 0.8 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF3688 PF12461.8 gi|242399603|ref|YP_002995028.1| - 0.18 10.2 0.0 0.27 9.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3688) DUF169 PF02596.15 gi|242399604|ref|YP_002995029.1| - 5.4e-27 95.1 0.0 6.1e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 HMGL-like PF00682.19 gi|242399605|ref|YP_002995030.1| - 1.2e-49 169.2 0.0 1.8e-49 168.7 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Cupin_2 PF07883.11 gi|242399607|ref|YP_002995032.1| - 6.3e-17 61.1 0.4 8.6e-17 60.6 0.4 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|242399607|ref|YP_002995032.1| - 1.7e-06 28.0 0.0 2.1e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Ectoine_synth PF06339.12 gi|242399607|ref|YP_002995032.1| - 0.00012 22.3 0.1 0.00015 22.0 0.1 1.2 1 0 0 1 1 1 1 Ectoine synthase DMSP_lyase PF16867.5 gi|242399607|ref|YP_002995032.1| - 0.00019 21.1 0.3 0.00025 20.7 0.3 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_3 PF05899.12 gi|242399607|ref|YP_002995032.1| - 0.00024 20.7 0.1 0.00039 20.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|242399607|ref|YP_002995032.1| - 0.0011 18.6 0.0 0.0013 18.4 0.0 1.1 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|242399607|ref|YP_002995032.1| - 0.03 14.2 0.0 0.037 13.9 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Auxin_BP PF02041.16 gi|242399607|ref|YP_002995032.1| - 0.043 13.5 0.1 0.071 12.8 0.1 1.4 1 1 0 1 1 1 0 Auxin binding protein Ldh_1_N PF00056.23 gi|242399608|ref|YP_002995033.1| - 9.7e-41 139.2 0.1 1.4e-40 138.6 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|242399608|ref|YP_002995033.1| - 3.7e-24 85.5 0.0 5.6e-24 84.9 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|242399608|ref|YP_002995033.1| - 2.9e-05 23.7 2.1 0.00044 19.8 0.1 2.5 2 1 1 3 3 3 1 Family 4 glycosyl hydrolase 2-Hacid_dh_C PF02826.19 gi|242399608|ref|YP_002995033.1| - 0.043 13.2 0.1 0.089 12.1 0.1 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|242399608|ref|YP_002995033.1| - 0.057 13.7 0.1 0.58 10.4 0.1 2.3 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain ThiF PF00899.21 gi|242399608|ref|YP_002995033.1| - 0.059 12.7 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 ThiF family Glyco_hydro_4C PF11975.8 gi|242399608|ref|YP_002995033.1| - 0.066 13.3 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain F420_oxidored PF03807.17 gi|242399608|ref|YP_002995033.1| - 0.2 12.3 1.4 0.98 10.0 0.4 2.6 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent UPF0261 PF06792.11 gi|242399609|ref|YP_002995034.1| - 1.1e-95 320.9 0.0 7.5e-90 301.8 0.0 2.0 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0261) Acyl_transf_2 PF02273.15 gi|242399609|ref|YP_002995034.1| - 0.036 13.3 0.0 0.056 12.7 0.0 1.2 1 0 0 1 1 1 0 Acyl transferase PEP-utilizers PF00391.23 gi|242399610|ref|YP_002995035.1| - 1.2e-22 79.4 0.1 2e-22 78.7 0.1 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain SspB PF04386.13 gi|242399610|ref|YP_002995035.1| - 0.041 13.8 0.0 0.077 12.9 0.0 1.5 1 0 0 1 1 1 0 Stringent starvation protein B CAF1A PF12253.8 gi|242399610|ref|YP_002995035.1| - 0.061 13.5 1.7 0.37 11.0 0.7 2.6 2 0 0 2 2 2 0 Chromatin assembly factor 1 subunit A DUF296 PF03479.15 gi|242399611|ref|YP_002995036.1| - 1.2e-22 80.3 0.0 1.5e-22 79.9 0.0 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Aldolase PF01081.19 gi|242399612|ref|YP_002995037.1| - 0.015 14.7 0.1 0.018 14.5 0.1 1.2 1 0 0 1 1 1 0 KDPG and KHG aldolase Transket_pyr PF02779.24 gi|242399613|ref|YP_002995038.1| - 1.2e-53 181.4 0.0 1.7e-53 180.9 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|242399613|ref|YP_002995038.1| - 1.9e-41 140.8 0.2 5.1e-41 139.4 0.1 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|242399613|ref|YP_002995038.1| - 0.0089 16.3 0.1 0.022 15.0 0.1 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Ribosomal_S22 PF08136.11 gi|242399613|ref|YP_002995038.1| - 0.09 13.1 0.0 14 6.1 0.0 2.4 2 0 0 2 2 2 0 30S ribosomal protein subunit S22 family Rpp20 PF12328.8 gi|242399613|ref|YP_002995038.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P E1_dh PF00676.20 gi|242399614|ref|YP_002995039.1| - 4e-97 324.8 0.0 4.7e-97 324.6 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|242399614|ref|YP_002995039.1| - 7.8e-07 29.0 6.2 2.1e-06 27.6 2.8 2.5 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|242399614|ref|YP_002995039.1| - 0.0045 16.0 0.0 0.0073 15.3 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DUF1451 PF07295.11 gi|242399614|ref|YP_002995039.1| - 0.028 14.5 0.2 0.049 13.7 0.2 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain DXP_synthase_N PF13292.6 gi|242399614|ref|YP_002995039.1| - 0.028 13.6 0.0 0.069 12.3 0.0 1.6 1 1 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Biotin_lipoyl PF00364.22 gi|242399615|ref|YP_002995040.1| - 3.2e-18 65.3 7.1 3.6e-18 65.2 7.1 1.0 1 0 0 1 1 1 1 Biotin-requiring enzyme GCV_H PF01597.19 gi|242399615|ref|YP_002995040.1| - 1.2e-06 28.4 3.9 2.1e-06 27.6 1.8 1.9 1 1 1 2 2 2 1 Glycine cleavage H-protein Biotin_lipoyl_2 PF13533.6 gi|242399615|ref|YP_002995040.1| - 1.9e-06 27.6 0.6 0.0055 16.5 0.2 2.1 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 gi|242399615|ref|YP_002995040.1| - 0.0017 18.3 0.8 0.022 14.7 0.1 2.0 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 gi|242399615|ref|YP_002995040.1| - 0.0054 17.4 1.6 0.26 12.0 0.2 2.1 1 1 1 2 2 2 2 HlyD family secretion protein PYNP_C PF07831.13 gi|242399615|ref|YP_002995040.1| - 0.015 15.0 2.4 0.32 10.7 0.2 2.3 1 1 1 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain QRPTase_N PF02749.16 gi|242399615|ref|YP_002995040.1| - 0.027 14.5 0.6 0.27 11.3 0.1 2.0 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain DUF3634 PF12321.8 gi|242399615|ref|YP_002995040.1| - 0.08 13.3 0.1 0.093 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3634) 2-oxoacid_dh PF00198.23 gi|242399616|ref|YP_002995041.1| - 2.2e-79 266.2 0.3 2.6e-79 266.0 0.3 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3_binding PF02817.17 gi|242399616|ref|YP_002995041.1| - 2.9e-06 27.5 0.0 7.2e-06 26.2 0.0 1.7 1 0 0 1 1 1 1 e3 binding domain CAT PF00302.18 gi|242399616|ref|YP_002995041.1| - 5.1e-05 23.3 0.0 0.0001 22.3 0.0 1.5 1 1 0 1 1 1 1 Chloramphenicol acetyltransferase TssR PF17643.1 gi|242399616|ref|YP_002995041.1| - 0.016 13.2 0.1 0.02 12.9 0.1 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssR Lin0512_fam PF09585.10 gi|242399617|ref|YP_002995042.1| - 1e-32 112.6 0.2 1.1e-32 112.4 0.2 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein (Lin0512_fam) NAD_kinase PF01513.21 gi|242399618|ref|YP_002995043.1| - 2.6e-13 49.8 0.2 4.4e-12 45.8 0.1 2.1 2 0 0 2 2 2 2 ATP-NAD kinase DAGK_cat PF00781.24 gi|242399618|ref|YP_002995043.1| - 3.5e-06 26.6 0.5 2.2e-05 24.1 0.3 2.1 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain BPL_LplA_LipB PF03099.19 gi|242399619|ref|YP_002995044.1| - 7.1e-10 38.9 0.0 1.5e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Peptidase_M10 PF00413.24 gi|242399619|ref|YP_002995044.1| - 0.037 13.9 0.3 0.24 11.2 0.1 1.9 2 0 0 2 2 2 0 Matrixin Biotin_lipoyl PF00364.22 gi|242399620|ref|YP_002995045.1| - 2.2e-14 53.0 8.5 3.1e-14 52.6 8.5 1.2 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|242399620|ref|YP_002995045.1| - 9.4e-08 31.8 5.5 0.0025 17.6 0.2 2.2 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|242399620|ref|YP_002995045.1| - 0.0023 18.6 2.4 0.027 15.2 0.2 2.1 1 1 1 2 2 2 2 HlyD family secretion protein QRPTase_N PF02749.16 gi|242399620|ref|YP_002995045.1| - 0.0041 17.1 0.5 0.094 12.8 0.1 2.1 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain RnfC_N PF13375.6 gi|242399620|ref|YP_002995045.1| - 0.015 15.2 1.4 0.029 14.3 1.4 1.5 1 1 0 1 1 1 0 RnfC Barrel sandwich hybrid domain DUF2154 PF09922.9 gi|242399620|ref|YP_002995045.1| - 0.024 14.5 0.2 0.045 13.6 0.2 1.4 1 0 0 1 1 1 0 Cell wall-active antibiotics response 4TMS YvqF SBP_bac_6 PF13343.6 gi|242399620|ref|YP_002995045.1| - 0.054 12.9 0.1 0.063 12.7 0.1 1.0 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein TetR_C_21 PF17926.1 gi|242399620|ref|YP_002995045.1| - 0.096 12.8 0.2 0.4 10.8 0.3 1.8 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Peptidase_M23 PF01551.22 gi|242399620|ref|YP_002995045.1| - 0.11 12.7 0.9 10 6.4 0.1 2.2 1 1 1 2 2 2 0 Peptidase family M23 Transket_pyr PF02779.24 gi|242399621|ref|YP_002995046.1| - 1.4e-47 161.6 0.0 2.8e-47 160.7 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|242399621|ref|YP_002995046.1| - 8.7e-37 125.8 0.2 1.3e-36 125.2 0.2 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 gi|242399622|ref|YP_002995047.1| - 1.1e-85 287.2 0.0 1.4e-85 286.9 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|242399622|ref|YP_002995047.1| - 3e-09 36.5 0.1 7e-09 35.3 0.1 1.6 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|242399622|ref|YP_002995047.1| - 8.3e-08 32.2 4.6 6e-07 29.4 1.2 3.1 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|242399622|ref|YP_002995047.1| - 0.00013 21.1 0.0 0.00023 20.3 0.0 1.4 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain SpoVS PF04232.12 gi|242399622|ref|YP_002995047.1| - 0.091 12.5 0.8 0.26 11.0 0.3 2.0 2 0 0 2 2 2 0 Stage V sporulation protein S (SpoVS) SH3_1 PF00018.28 gi|242399623|ref|YP_002995048.1| - 0.038 13.6 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 SH3 domain Radical_SAM PF04055.21 gi|242399624|ref|YP_002995049.1| - 3.3e-11 43.8 0.1 1.1e-10 42.2 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|242399624|ref|YP_002995049.1| - 0.055 13.7 0.3 0.63 10.3 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF1848 PF08902.11 gi|242399624|ref|YP_002995049.1| - 6.5 6.4 10.0 50 3.5 6.0 2.9 2 1 0 3 3 3 0 Domain of unknown function (DUF1848) DUF1624 PF07786.12 gi|242399625|ref|YP_002995050.1| - 1.5e-68 230.7 12.9 1.7e-68 230.5 12.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) OpgC_C PF10129.9 gi|242399625|ref|YP_002995050.1| - 0.078 11.8 12.7 0.09 11.6 5.4 3.0 1 1 2 3 3 3 0 OpgC protein NfeD PF01957.18 gi|242399626|ref|YP_002995051.1| - 2.9e-14 53.2 1.0 2.9e-14 53.2 1.0 1.5 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding GTP_EFTU_D2 PF03144.25 gi|242399626|ref|YP_002995051.1| - 0.09 13.2 0.4 1.8 9.0 0.4 2.4 1 1 0 1 1 1 0 Elongation factor Tu domain 2 PALP PF00291.25 gi|242399627|ref|YP_002995052.1| - 4.6e-68 229.8 0.8 5.6e-68 229.5 0.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.19 gi|242399627|ref|YP_002995052.1| - 0.044 13.8 0.2 0.077 13.0 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|242399627|ref|YP_002995052.1| - 0.062 13.0 2.1 0.13 12.0 2.1 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|242399627|ref|YP_002995052.1| - 0.12 12.4 0.8 0.29 11.2 0.8 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|242399627|ref|YP_002995052.1| - 0.24 11.1 3.2 0.94 9.3 3.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2_11 PF16622.5 gi|242399627|ref|YP_002995052.1| - 0.36 10.6 5.3 0.84 9.4 0.4 2.3 1 1 1 2 2 2 0 zinc-finger C2H2-type UPF0020 PF01170.18 gi|242399628|ref|YP_002995053.1| - 2.3e-13 50.3 0.0 1.3e-11 44.6 0.0 3.2 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|242399628|ref|YP_002995053.1| - 1.1e-05 25.2 0.0 3.5e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 DNA methylase Methyltransf_23 PF13489.6 gi|242399628|ref|YP_002995053.1| - 6.9e-05 22.7 0.0 0.0001 22.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|242399628|ref|YP_002995053.1| - 0.00049 19.9 0.0 0.00074 19.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|242399628|ref|YP_002995053.1| - 0.031 13.8 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|242399628|ref|YP_002995053.1| - 0.033 13.8 0.0 0.051 13.2 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|242399628|ref|YP_002995053.1| - 0.069 12.8 0.0 0.15 11.7 0.0 1.5 1 1 0 1 1 1 0 Conserved hypothetical protein 95 UPF0047 PF01894.17 gi|242399629|ref|YP_002995054.1| - 3.4e-38 130.3 0.0 3.9e-38 130.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 TetR_C_10 PF16295.5 gi|242399629|ref|YP_002995054.1| - 0.028 14.7 0.0 0.032 14.5 0.0 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF257 PF03192.13 gi|242399630|ref|YP_002995055.1| - 1.1e-30 107.0 0.2 1.2e-30 106.9 0.2 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 HTH_11 PF08279.12 gi|242399632|ref|YP_002995057.1| - 0.0013 18.6 2.2 0.0024 17.8 0.6 2.2 2 1 0 2 2 2 1 HTH domain HrcA_DNA-bdg PF03444.15 gi|242399632|ref|YP_002995057.1| - 0.0017 18.0 0.1 0.0038 16.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_5 PF01022.20 gi|242399632|ref|YP_002995057.1| - 0.0036 17.1 0.1 0.065 13.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|242399632|ref|YP_002995057.1| - 0.0061 16.9 0.2 0.013 15.9 0.0 1.6 2 0 0 2 2 2 1 Penicillinase repressor Rrf2 PF02082.20 gi|242399632|ref|YP_002995057.1| - 0.025 14.9 0.5 0.17 12.3 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator FUR PF01475.19 gi|242399632|ref|YP_002995057.1| - 0.092 12.9 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family DASH_Dad4 PF08650.10 gi|242399632|ref|YP_002995057.1| - 0.13 12.2 0.8 0.3 11.1 0.8 1.6 1 0 0 1 1 1 0 DASH complex subunit Dad4 FlaC_arch PF05377.11 gi|242399632|ref|YP_002995057.1| - 1.9 8.9 6.9 0.56 10.6 2.7 2.1 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) GCIP PF13324.6 gi|242399633|ref|YP_002995058.1| - 0.0018 18.0 3.2 0.003 17.2 3.2 1.3 1 0 0 1 1 1 1 Grap2 and cyclin-D-interacting CobU PF02283.16 gi|242399633|ref|YP_002995058.1| - 0.064 12.8 1.0 0.13 11.8 1.1 1.4 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Bacillus_HBL PF05791.11 gi|242399633|ref|YP_002995058.1| - 0.077 12.8 3.5 0.036 13.9 1.0 1.6 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) GAT PF03127.14 gi|242399633|ref|YP_002995058.1| - 0.15 12.4 4.5 0.39 11.0 0.1 3.0 3 1 1 4 4 4 0 GAT domain Atg14 PF10186.9 gi|242399633|ref|YP_002995058.1| - 0.17 10.9 2.0 0.24 10.4 2.0 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4795 PF16043.5 gi|242399633|ref|YP_002995058.1| - 0.18 11.4 14.2 1.1 8.9 3.6 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Carbpep_Y_N PF05388.11 gi|242399633|ref|YP_002995058.1| - 0.31 11.6 5.9 6.8 7.2 5.0 2.4 1 1 1 2 2 2 0 Carboxypeptidase Y pro-peptide TMP_2 PF06791.13 gi|242399633|ref|YP_002995058.1| - 0.31 10.7 0.8 13 5.3 0.0 2.2 2 0 0 2 2 2 0 Prophage tail length tape measure protein HSP70 PF00012.20 gi|242399633|ref|YP_002995058.1| - 0.64 8.1 9.2 0.98 7.5 9.2 1.2 1 0 0 1 1 1 0 Hsp70 protein Csm2_III-A PF03750.13 gi|242399633|ref|YP_002995058.1| - 2.3 9.1 9.8 7.4 7.4 6.0 3.0 1 1 1 2 2 2 0 Csm2 Type III-A Fib_alpha PF08702.10 gi|242399633|ref|YP_002995058.1| - 2.3 8.4 7.2 1.5 9.0 4.7 1.9 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family zf-C4H2 PF10146.9 gi|242399633|ref|YP_002995058.1| - 3.3 8.0 16.6 5.4 7.3 16.5 1.6 1 1 0 1 1 1 0 Zinc finger-containing protein MMR_HSR1 PF01926.23 gi|242399634|ref|YP_002995059.1| - 4.2e-22 78.4 0.1 6.8e-22 77.7 0.1 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|242399634|ref|YP_002995059.1| - 6.8e-13 48.4 0.9 1.3e-12 47.5 0.9 1.4 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|242399634|ref|YP_002995059.1| - 3.8e-10 39.6 0.3 1.2e-06 28.2 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|242399634|ref|YP_002995059.1| - 2.8e-08 34.0 0.3 2.9e-05 24.2 0.2 2.5 2 1 1 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 gi|242399634|ref|YP_002995059.1| - 1.9e-07 31.1 3.1 0.0071 16.3 0.2 2.6 2 2 0 2 2 2 2 RsgA GTPase cobW PF02492.19 gi|242399634|ref|YP_002995059.1| - 4.9e-07 29.5 0.5 6.7e-06 25.8 0.0 2.0 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.21 gi|242399634|ref|YP_002995059.1| - 1.3e-06 28.0 2.1 0.024 14.1 0.2 2.2 2 0 0 2 2 2 2 ADP-ribosylation factor family PduV-EutP PF10662.9 gi|242399634|ref|YP_002995059.1| - 2.4e-06 27.4 0.7 0.0041 16.9 0.0 2.2 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|242399634|ref|YP_002995059.1| - 5.1e-06 26.7 0.2 0.0029 17.8 0.1 2.3 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 gi|242399634|ref|YP_002995059.1| - 2.2e-05 24.4 0.4 3.7e-05 23.7 0.4 1.4 1 1 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Septin PF00735.18 gi|242399634|ref|YP_002995059.1| - 0.0001 21.7 3.2 0.0024 17.2 0.0 2.4 1 1 1 2 2 2 1 Septin GBP PF02263.19 gi|242399634|ref|YP_002995059.1| - 0.00048 19.5 0.0 0.00088 18.6 0.0 1.4 1 0 0 1 1 1 1 Guanylate-binding protein, N-terminal domain Ras PF00071.22 gi|242399634|ref|YP_002995059.1| - 0.0006 19.4 0.3 0.0055 16.3 0.3 2.2 1 1 0 1 1 1 1 Ras family ATP_bind_1 PF03029.17 gi|242399634|ref|YP_002995059.1| - 0.0017 18.2 0.1 0.044 13.6 0.0 2.3 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein AIG1 PF04548.16 gi|242399634|ref|YP_002995059.1| - 0.012 15.0 0.1 0.019 14.3 0.1 1.5 1 1 0 1 1 1 0 AIG1 family AAA_28 PF13521.6 gi|242399634|ref|YP_002995059.1| - 0.015 15.6 0.2 0.031 14.5 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|242399634|ref|YP_002995059.1| - 0.022 15.0 0.3 0.091 13.0 0.3 1.9 1 1 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.12 gi|242399634|ref|YP_002995059.1| - 0.036 13.4 0.8 0.049 13.0 0.8 1.5 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region ABC_tran PF00005.27 gi|242399634|ref|YP_002995059.1| - 0.042 14.4 1.5 0.072 13.6 1.5 1.7 1 1 0 1 1 1 0 ABC transporter AAA_29 PF13555.6 gi|242399634|ref|YP_002995059.1| - 0.085 12.6 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NOG1 PF06858.14 gi|242399634|ref|YP_002995059.1| - 0.11 12.2 2.3 0.29 10.9 0.3 2.5 2 1 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) KOW PF00467.29 gi|242399635|ref|YP_002995060.1| - 0.14 12.2 1.8 0.34 10.9 0.2 2.2 2 0 0 2 2 2 0 KOW motif HD_3 PF13023.6 gi|242399636|ref|YP_002995061.1| - 3e-26 92.3 0.1 3.6e-26 92.1 0.1 1.1 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|242399636|ref|YP_002995061.1| - 1.4e-14 54.3 0.5 3.9e-14 52.8 0.5 1.7 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|242399636|ref|YP_002995061.1| - 2.5e-06 27.7 0.6 3.8e-05 23.9 0.6 2.2 1 1 0 1 1 1 1 HD domain HOCHOB PF17943.1 gi|242399636|ref|YP_002995061.1| - 0.093 13.4 0.1 0.13 13.0 0.1 1.3 1 0 0 1 1 1 0 Homeobox-cysteine loop-homeobox Lactamase_B PF00753.27 gi|242399637|ref|YP_002995062.1| - 4e-16 59.6 0.0 6.2e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|242399637|ref|YP_002995062.1| - 0.00019 21.0 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|242399637|ref|YP_002995062.1| - 0.00033 20.6 0.0 0.00063 19.7 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain PDDEXK_1 PF12705.7 gi|242399638|ref|YP_002995063.1| - 5.1e-05 23.3 0.3 0.0012 18.9 0.2 2.0 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|242399638|ref|YP_002995063.1| - 0.0029 17.7 0.1 0.029 14.5 0.1 2.2 1 1 0 1 1 1 1 Domain of unknown function DUF83 Met_10 PF02475.16 gi|242399640|ref|YP_002995065.1| - 7.1e-69 231.5 1.1 8.7e-69 231.3 1.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|242399640|ref|YP_002995065.1| - 0.00013 21.5 0.0 0.00024 20.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|242399640|ref|YP_002995065.1| - 0.00017 20.7 0.0 0.00022 20.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.15 gi|242399640|ref|YP_002995065.1| - 0.00035 20.3 0.0 0.00063 19.4 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|242399640|ref|YP_002995065.1| - 0.00092 18.8 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|242399640|ref|YP_002995065.1| - 0.0039 16.7 0.0 0.0084 15.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Pox_A51 PF04948.13 gi|242399640|ref|YP_002995065.1| - 0.0086 15.0 0.1 0.012 14.5 0.1 1.2 1 0 0 1 1 1 1 Poxvirus A51 protein ADH_zinc_N PF00107.26 gi|242399640|ref|YP_002995065.1| - 0.0094 15.9 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_25 PF13649.6 gi|242399640|ref|YP_002995065.1| - 0.011 16.4 0.0 0.024 15.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.17 gi|242399640|ref|YP_002995065.1| - 0.043 13.2 0.0 0.069 12.5 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Radical_SAM PF04055.21 gi|242399642|ref|YP_002995067.1| - 4.6e-14 53.2 4.4 9.2e-13 48.9 2.3 2.5 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|242399642|ref|YP_002995067.1| - 0.0011 19.1 0.6 0.061 13.5 0.6 2.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain QueC PF06508.13 gi|242399643|ref|YP_002995068.1| - 1.3e-09 37.9 0.0 2.2e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|242399643|ref|YP_002995068.1| - 6.3e-07 29.3 0.1 1.6e-06 28.0 0.0 1.7 2 1 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.16 gi|242399643|ref|YP_002995068.1| - 1.1e-05 24.4 0.1 2.2e-05 23.5 0.1 1.4 1 1 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|242399643|ref|YP_002995068.1| - 2.3e-05 24.5 0.0 3.3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|242399643|ref|YP_002995068.1| - 0.00011 21.8 0.0 0.00021 20.9 0.0 1.4 1 0 0 1 1 1 1 Diphthamide synthase NAD_synthase PF02540.17 gi|242399643|ref|YP_002995068.1| - 0.00012 21.3 0.0 0.00019 20.6 0.0 1.3 1 0 0 1 1 1 1 NAD synthase ThiI PF02568.14 gi|242399643|ref|YP_002995068.1| - 0.0022 17.6 0.1 0.0055 16.3 0.1 1.7 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 gi|242399643|ref|YP_002995068.1| - 0.0038 16.6 0.0 0.0063 15.9 0.0 1.3 1 0 0 1 1 1 1 Arginosuccinate synthase DNA_pol_B_thumb PF14791.6 gi|242399643|ref|YP_002995068.1| - 0.014 15.5 0.1 0.24 11.6 0.1 2.7 3 0 0 3 3 3 0 DNA polymerase beta thumb Enkurin PF13864.6 gi|242399643|ref|YP_002995068.1| - 0.019 15.4 0.0 1.9 8.9 0.0 2.7 2 0 0 2 2 2 0 Calmodulin-binding Asn_synthase PF00733.21 gi|242399643|ref|YP_002995068.1| - 0.15 11.7 0.0 0.21 11.2 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase zf-RRPl_C4 PF17026.5 gi|242399643|ref|YP_002995068.1| - 0.21 11.7 2.5 0.87 9.7 0.5 2.3 2 0 0 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type DUF4428 PF14471.6 gi|242399643|ref|YP_002995068.1| - 0.23 11.4 9.7 0.054 13.4 3.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) AI-2E_transport PF01594.16 gi|242399644|ref|YP_002995069.1| - 8.1e-40 137.0 30.9 1.2e-39 136.4 30.9 1.2 1 1 0 1 1 1 1 AI-2E family transporter Isochorismatase PF00857.20 gi|242399645|ref|YP_002995070.1| - 5.2e-45 153.8 0.0 5.8e-45 153.6 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Put_DNA-bind_N PF06971.13 gi|242399645|ref|YP_002995070.1| - 0.0052 16.8 0.2 0.016 15.2 0.1 1.9 2 0 0 2 2 2 1 Putative DNA-binding protein N-terminus Exog_C PF18026.1 gi|242399645|ref|YP_002995070.1| - 0.023 14.7 1.3 0.04 14.0 0.1 1.9 2 0 0 2 2 2 0 Endo/exonuclease (EXOG) C-terminal domain Pyr_redox PF00070.27 gi|242399645|ref|YP_002995070.1| - 0.19 12.3 1.0 11 6.7 0.2 2.5 1 1 2 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase DUF2240 PF09999.9 gi|242399646|ref|YP_002995071.1| - 2.9e-09 36.7 0.0 0.00026 20.6 0.0 2.0 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2240) OAM_alpha PF16552.5 gi|242399646|ref|YP_002995071.1| - 0.051 13.5 0.1 0.075 12.9 0.1 1.5 1 1 0 1 1 1 0 D-ornithine 4,5-aminomutase alpha-subunit DUF5353 PF17304.2 gi|242399647|ref|YP_002995072.1| - 1.4 8.7 4.6 0.39 10.5 0.6 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5353) 4HBT PF03061.22 gi|242399648|ref|YP_002995073.1| - 4.9e-09 36.4 0.0 8.3e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily MaoC_dehydratas PF01575.19 gi|242399648|ref|YP_002995073.1| - 3e-05 23.6 0.1 4.1e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 MaoC like domain 4HBT_3 PF13622.6 gi|242399648|ref|YP_002995073.1| - 0.011 16.0 0.0 0.012 15.9 0.0 1.0 1 0 0 1 1 1 0 Thioesterase-like superfamily DUF4442 PF14539.6 gi|242399648|ref|YP_002995073.1| - 0.037 14.2 0.0 0.062 13.4 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4442) PadR PF03551.14 gi|242399649|ref|YP_002995074.1| - 1.4e-16 60.2 0.3 1.7e-16 59.9 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|242399649|ref|YP_002995074.1| - 1.4e-07 32.1 0.1 1.8e-07 31.8 0.1 1.0 1 0 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 gi|242399649|ref|YP_002995074.1| - 0.00013 22.0 0.2 0.00024 21.2 0.2 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain FUR PF01475.19 gi|242399649|ref|YP_002995074.1| - 0.0058 16.8 0.0 0.0073 16.4 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family DUF505 PF04458.12 gi|242399649|ref|YP_002995074.1| - 0.019 13.4 0.1 0.02 13.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_12 PF08461.10 gi|242399649|ref|YP_002995074.1| - 0.043 13.8 0.0 0.082 12.9 0.0 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain MFS_1 PF07690.16 gi|242399650|ref|YP_002995075.1| - 7.2e-54 183.0 42.5 8e-42 143.4 15.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|242399650|ref|YP_002995075.1| - 3.3e-10 39.4 24.0 4e-07 29.3 2.1 3.4 2 2 1 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|242399650|ref|YP_002995075.1| - 4.6e-05 22.2 18.8 9.9e-05 21.1 18.8 1.6 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_1_like PF12832.7 gi|242399650|ref|YP_002995075.1| - 5.5e-05 22.2 19.5 0.00037 19.5 19.4 1.9 1 1 0 1 1 1 1 MFS_1 like family PUCC PF03209.15 gi|242399650|ref|YP_002995075.1| - 0.0084 15.2 14.6 0.032 13.2 3.5 3.2 2 1 1 4 4 4 2 PUCC protein DUF2964 PF11177.8 gi|242399650|ref|YP_002995075.1| - 0.04 14.1 0.2 0.67 10.2 0.0 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) Ferlin_C PF16165.5 gi|242399650|ref|YP_002995075.1| - 0.14 12.1 1.5 1.1 9.2 1.1 2.4 2 0 0 2 2 2 0 Ferlin C-terminus Asparaginase PF00710.20 gi|242399651|ref|YP_002995076.1| - 1.5e-59 200.8 0.0 2.4e-59 200.1 0.0 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|242399651|ref|YP_002995076.1| - 1.5e-31 108.9 0.1 5.2e-31 107.2 0.0 1.9 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain Proteasome PF00227.26 gi|242399651|ref|YP_002995076.1| - 0.078 12.5 0.5 0.17 11.4 0.1 1.8 2 0 0 2 2 2 0 Proteasome subunit DUF4288 PF14119.6 gi|242399652|ref|YP_002995077.1| - 0.033 14.6 0.6 0.1 13.1 0.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4288) KIX PF02172.16 gi|242399652|ref|YP_002995077.1| - 0.042 14.1 0.3 0.052 13.8 0.1 1.5 2 0 0 2 2 2 0 KIX domain DUF3829 PF12889.7 gi|242399652|ref|YP_002995077.1| - 0.048 13.1 0.2 0.057 12.9 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3829) S1 PF00575.23 gi|242399653|ref|YP_002995078.1| - 2.7e-09 37.2 2.1 6.8e-09 35.9 2.1 1.7 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti-codon PF01336.25 gi|242399653|ref|YP_002995078.1| - 1.3e-08 34.7 0.2 3.3e-08 33.4 0.2 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.19 gi|242399653|ref|YP_002995078.1| - 1.1e-07 32.0 14.1 0.0017 18.7 1.1 2.5 2 0 0 2 2 2 2 DnaJ central domain DHH PF01368.20 gi|242399653|ref|YP_002995078.1| - 0.00047 20.3 0.1 0.0018 18.5 0.0 1.9 2 0 0 2 2 2 1 DHH family TackOD1 PF18551.1 gi|242399653|ref|YP_002995078.1| - 0.003 17.2 0.6 0.003 17.2 0.6 1.8 2 0 0 2 2 2 1 Thaumarchaeal output domain 1 Anti-TRAP PF15777.5 gi|242399653|ref|YP_002995078.1| - 0.011 15.7 20.5 0.048 13.6 1.7 3.8 2 1 2 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein tRNA_anti_2 PF13742.6 gi|242399653|ref|YP_002995078.1| - 0.031 14.5 0.0 0.12 12.6 0.0 2.0 2 0 0 2 2 1 0 OB-fold nucleic acid binding domain Rep_fac-A_3 PF08661.11 gi|242399653|ref|YP_002995078.1| - 0.043 14.2 0.0 0.12 12.7 0.0 1.8 1 0 0 1 1 1 0 Replication factor A protein 3 DHHA1 PF02272.19 gi|242399653|ref|YP_002995078.1| - 0.054 13.9 0.0 0.22 11.9 0.0 2.1 1 0 0 1 1 1 0 DHHA1 domain DUF2851 PF11013.8 gi|242399653|ref|YP_002995078.1| - 0.074 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2851) DUF1356 PF07092.12 gi|242399653|ref|YP_002995078.1| - 2.3 7.4 4.4 2.6 7.2 0.2 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1356) DUF2391 PF09622.10 gi|242399654|ref|YP_002995079.1| - 8.3e-14 51.6 0.4 1e-13 51.2 0.4 1.0 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) THOC7 PF05615.13 gi|242399654|ref|YP_002995079.1| - 0.059 13.6 0.5 1.9 8.7 0.3 2.1 2 0 0 2 2 2 0 Tho complex subunit 7 DUF2663 PF10864.8 gi|242399654|ref|YP_002995079.1| - 0.19 12.2 6.1 0.47 10.9 0.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2663) ABC_tran_CTD PF16326.5 gi|242399654|ref|YP_002995079.1| - 0.2 12.0 2.9 1.2 9.4 0.7 2.2 2 0 0 2 2 2 0 ABC transporter C-terminal domain DUF2721 PF11026.8 gi|242399654|ref|YP_002995079.1| - 5.5 6.9 10.7 0.41 10.5 3.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) DUF3226 PF11536.8 gi|242399655|ref|YP_002995080.1| - 5e-56 190.0 3.0 5e-56 190.0 3.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3226) ApoB100_C PF12491.8 gi|242399655|ref|YP_002995080.1| - 0.052 13.5 0.2 0.13 12.2 0.2 1.6 1 0 0 1 1 1 0 Apolipoprotein B100 C terminal DUF2913 PF11140.8 gi|242399655|ref|YP_002995080.1| - 0.078 12.7 0.2 0.13 12.0 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2913) Glycos_transf_2 PF00535.26 gi|242399656|ref|YP_002995081.1| - 1.7e-09 37.7 0.0 2.8e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|242399656|ref|YP_002995081.1| - 0.0016 18.4 0.0 0.0033 17.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 GFO_IDH_MocA PF01408.22 gi|242399657|ref|YP_002995082.1| - 1.8e-29 103.0 0.4 1.1e-28 100.5 0.2 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|242399657|ref|YP_002995082.1| - 6.9e-07 29.9 0.2 1.2e-06 29.1 0.2 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.17 gi|242399657|ref|YP_002995082.1| - 8.3e-07 29.0 0.0 1.8e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|242399657|ref|YP_002995082.1| - 0.02 15.4 0.2 0.065 13.8 0.2 1.9 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|242399658|ref|YP_002995083.1| - 3.5e-22 79.5 0.1 5.2e-22 78.9 0.1 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|242399658|ref|YP_002995083.1| - 0.00019 21.4 0.0 0.00063 19.7 0.0 2.0 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Regulator_TrmB PF11495.8 gi|242399659|ref|YP_002995084.1| - 2.5e-45 154.5 0.5 3.2e-45 154.1 0.5 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|242399659|ref|YP_002995084.1| - 7.4e-23 80.2 0.1 9.3e-22 76.7 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|242399659|ref|YP_002995084.1| - 0.011 15.6 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|242399659|ref|YP_002995084.1| - 0.016 15.1 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_9 PF08221.11 gi|242399659|ref|YP_002995084.1| - 0.037 14.1 0.0 0.16 12.1 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain ADH_N_assoc PF13823.6 gi|242399659|ref|YP_002995084.1| - 0.089 12.7 2.6 0.47 10.4 1.0 2.5 2 0 0 2 2 2 0 Alcohol dehydrogenase GroES-associated Rrf2 PF02082.20 gi|242399659|ref|YP_002995084.1| - 0.097 13.0 0.1 5.3 7.5 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator Coatomer_b_Cpla PF14806.6 gi|242399659|ref|YP_002995084.1| - 0.12 12.4 0.3 0.26 11.3 0.1 1.7 2 0 0 2 2 2 0 Coatomer beta subunit appendage platform DUF3533 PF12051.8 gi|242399659|ref|YP_002995084.1| - 0.17 10.8 0.0 0.24 10.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3533) HTH_IclR PF09339.10 gi|242399659|ref|YP_002995084.1| - 0.21 11.4 0.0 0.5 10.2 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain CRIC_ras_sig PF10534.9 gi|242399659|ref|YP_002995084.1| - 0.25 11.5 1.0 27 5.0 0.1 2.4 2 0 0 2 2 2 0 Connector enhancer of kinase suppressor of ras TIM PF00121.18 gi|242399660|ref|YP_002995085.1| - 2.3e-11 43.5 0.1 1.5e-10 40.9 0.0 1.8 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|242399660|ref|YP_002995085.1| - 4.6e-06 26.1 0.1 4.6e-06 26.1 0.1 1.9 3 0 0 3 3 3 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|242399660|ref|YP_002995085.1| - 0.00043 19.5 0.0 0.0011 18.2 0.0 1.6 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|242399660|ref|YP_002995085.1| - 0.002 17.2 0.5 0.0033 16.5 0.1 1.5 2 0 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|242399660|ref|YP_002995085.1| - 0.026 14.0 0.4 0.095 12.1 0.1 2.0 3 0 0 3 3 3 0 Histidine biosynthesis protein NMO PF03060.15 gi|242399660|ref|YP_002995085.1| - 0.036 13.5 2.2 0.039 13.3 0.8 1.6 1 1 1 2 2 2 0 Nitronate monooxygenase NanE PF04131.14 gi|242399660|ref|YP_002995085.1| - 0.12 11.5 1.9 0.21 10.8 0.3 2.0 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase RNA_pol_inhib PF16857.5 gi|242399660|ref|YP_002995085.1| - 0.7 9.7 3.5 1.7 8.5 0.0 2.7 3 0 0 3 3 3 0 RNA polymerase inhibitor AFOR_N PF02730.15 gi|242399661|ref|YP_002995086.1| - 1.5e-38 132.7 0.2 4.3e-38 131.2 0.0 1.9 3 0 0 3 3 3 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|242399661|ref|YP_002995086.1| - 2.1e-22 79.7 0.0 4.6e-22 78.6 0.0 1.5 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Peptidase_M19 PF01244.21 gi|242399661|ref|YP_002995086.1| - 0.02 14.1 0.0 0.036 13.2 0.0 1.3 1 0 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) FBPase_3 PF01950.16 gi|242399662|ref|YP_002995087.1| - 6.4e-186 617.8 0.0 7.2e-186 617.6 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Syntaxin-6_N PF09177.11 gi|242399663|ref|YP_002995088.1| - 0.11 13.1 1.9 0.91 10.1 0.6 2.0 2 0 0 2 2 2 0 Syntaxin 6, N-terminal NdhL PF10716.9 gi|242399664|ref|YP_002995089.1| - 1.8 8.6 8.5 17 5.4 8.5 2.3 1 1 0 1 1 1 0 NADH dehydrogenase transmembrane subunit Nitro_FeMo-Co PF02579.17 gi|242399666|ref|YP_002995091.1| - 9e-22 77.2 2.4 9.1e-22 77.2 0.3 1.8 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor UPF0051 PF01458.17 gi|242399667|ref|YP_002995092.1| - 8.7e-32 110.6 2.2 1.1e-31 110.2 2.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|242399668|ref|YP_002995093.1| - 1.2e-27 97.1 0.0 1.6e-27 96.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242399668|ref|YP_002995093.1| - 6.8e-09 35.9 1.0 0.0016 18.3 0.2 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|242399668|ref|YP_002995093.1| - 1.4e-07 31.2 0.1 0.0031 17.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|242399668|ref|YP_002995093.1| - 0.0048 16.6 0.0 0.0081 15.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|242399668|ref|YP_002995093.1| - 0.0082 16.7 0.4 0.016 15.7 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|242399668|ref|YP_002995093.1| - 0.032 13.9 0.1 0.087 12.5 0.0 1.6 1 1 1 2 2 2 0 AAA ATPase domain T2SSE PF00437.20 gi|242399668|ref|YP_002995093.1| - 0.041 13.0 0.0 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|242399668|ref|YP_002995093.1| - 0.049 13.5 0.0 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase PIG-L PF02585.17 gi|242399668|ref|YP_002995093.1| - 0.052 14.2 0.0 0.21 12.2 0.0 1.8 1 1 0 1 1 1 0 GlcNAc-PI de-N-acetylase AAA_5 PF07728.14 gi|242399668|ref|YP_002995093.1| - 0.067 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|242399668|ref|YP_002995093.1| - 0.085 12.6 0.5 1.9 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain Peptidase_C3G PF12381.8 gi|242399668|ref|YP_002995093.1| - 0.089 12.2 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Tungro spherical virus-type peptidase ATPase PF06745.13 gi|242399668|ref|YP_002995093.1| - 0.12 11.7 0.8 8.4 5.7 0.1 2.3 2 1 0 2 2 2 0 KaiC Fer4 PF00037.27 gi|242399670|ref|YP_002995095.1| - 6e-10 38.5 16.3 8.3e-08 31.7 2.3 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|242399670|ref|YP_002995095.1| - 6.9e-10 38.4 13.6 7.4e-07 28.9 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|242399670|ref|YP_002995095.1| - 9.7e-10 38.1 13.1 8e-05 22.5 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|242399670|ref|YP_002995095.1| - 2.5e-09 37.2 9.5 3e-09 36.9 9.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|242399670|ref|YP_002995095.1| - 4.9e-08 33.4 12.5 6.5e-08 33.1 12.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242399670|ref|YP_002995095.1| - 1.8e-07 31.2 12.1 4.1e-07 30.0 12.3 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|242399670|ref|YP_002995095.1| - 2.2e-07 30.9 19.8 7.5e-05 22.8 10.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|242399670|ref|YP_002995095.1| - 6.1e-05 23.2 13.4 0.00035 20.8 1.6 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|242399670|ref|YP_002995095.1| - 0.00024 21.6 11.3 0.0031 18.0 11.3 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|242399670|ref|YP_002995095.1| - 0.0014 19.5 12.9 0.17 12.9 3.0 2.2 1 1 3 4 4 4 4 4Fe-4S double cluster binding domain ETF_QO PF05187.13 gi|242399670|ref|YP_002995095.1| - 0.0072 16.4 6.2 0.039 14.1 6.6 1.8 1 1 1 2 2 2 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_17 PF13534.6 gi|242399670|ref|YP_002995095.1| - 0.023 15.2 12.2 0.047 14.2 2.2 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|242399670|ref|YP_002995095.1| - 0.036 14.9 6.5 0.051 14.4 0.5 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|242399670|ref|YP_002995095.1| - 0.094 13.5 7.3 0.94 10.3 7.3 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|242399670|ref|YP_002995095.1| - 0.097 13.7 17.3 0.79 10.8 5.6 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|242399670|ref|YP_002995095.1| - 0.32 11.5 13.7 0.34 11.4 3.6 2.1 1 1 2 3 3 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|242399670|ref|YP_002995095.1| - 2.1 8.6 10.1 1.1 9.5 2.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Nitro_FeMo-Co PF02579.17 gi|242399671|ref|YP_002995096.1| - 1.8e-13 50.6 0.0 2e-13 50.5 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor baeRF_family10 PF18854.1 gi|242399671|ref|YP_002995096.1| - 0.069 13.4 0.0 0.09 13.0 0.0 1.4 1 1 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 10 Cation_efflux PF01545.21 gi|242399672|ref|YP_002995097.1| - 1.6e-44 152.0 12.8 1.9e-44 151.8 12.8 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|242399672|ref|YP_002995097.1| - 8.4e-12 45.1 1.7 1.5e-11 44.2 1.7 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Lipocalin_8 PF16585.5 gi|242399672|ref|YP_002995097.1| - 0.19 12.2 0.0 0.33 11.4 0.0 1.4 1 0 0 1 1 1 0 Lipocalin-like domain OsmC PF02566.19 gi|242399673|ref|YP_002995098.1| - 1.1e-19 70.7 0.0 1.8e-19 70.1 0.0 1.3 1 1 0 1 1 1 1 OsmC-like protein MecA_N PF05223.11 gi|242399673|ref|YP_002995098.1| - 0.082 13.2 0.1 0.21 11.8 0.2 1.7 1 1 0 1 1 1 0 NTF2-like N-terminal transpeptidase domain LMWPc PF01451.21 gi|242399674|ref|YP_002995099.1| - 1.2e-26 93.8 0.0 2.1e-26 93.0 0.0 1.4 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF5398 PF17376.2 gi|242399674|ref|YP_002995099.1| - 0.068 13.8 0.1 0.11 13.1 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5398) Peptidase_M16_C PF05193.21 gi|242399674|ref|YP_002995099.1| - 0.11 12.5 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Peptidase M16 inactive domain SBF PF01758.16 gi|242399675|ref|YP_002995100.1| - 3.6e-47 160.6 15.9 3.6e-47 160.6 15.9 2.3 3 0 0 3 3 3 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|242399675|ref|YP_002995100.1| - 5.3e-12 45.7 23.4 1.4e-11 44.3 23.4 1.6 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Nitroreductase PF00881.24 gi|242399676|ref|YP_002995101.1| - 2.7e-33 115.4 0.0 3.1e-33 115.2 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|242399676|ref|YP_002995101.1| - 6.6e-08 32.4 0.0 0.004 16.7 0.0 2.1 2 0 0 2 2 2 2 Putative TM nitroreductase NusG_II PF07009.11 gi|242399677|ref|YP_002995102.1| - 0.089 13.0 0.1 0.18 12.0 0.1 1.6 1 1 0 1 1 1 0 NusG domain II Thioredoxin PF00085.20 gi|242399678|ref|YP_002995103.1| - 6.1e-13 48.7 0.0 7e-13 48.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|242399678|ref|YP_002995103.1| - 0.00016 21.7 0.0 0.0002 21.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|242399678|ref|YP_002995103.1| - 0.00024 21.5 0.0 0.0045 17.4 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain HyaE PF07449.11 gi|242399678|ref|YP_002995103.1| - 0.0019 18.2 0.0 0.0021 18.0 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_8 PF13905.6 gi|242399678|ref|YP_002995103.1| - 0.011 16.0 0.1 0.57 10.5 0.1 2.0 1 1 1 2 2 2 0 Thioredoxin-like OST3_OST6 PF04756.13 gi|242399678|ref|YP_002995103.1| - 0.13 11.6 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family AhpC-TSA PF00578.21 gi|242399678|ref|YP_002995103.1| - 0.13 12.1 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA family E1-E2_ATPase PF00122.20 gi|242399679|ref|YP_002995104.1| - 6e-58 195.4 1.1 6e-58 195.4 1.1 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|242399679|ref|YP_002995104.1| - 1.1e-46 159.7 6.0 1.1e-46 159.7 6.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|242399679|ref|YP_002995104.1| - 2.4e-34 117.6 9.0 2.5e-18 66.3 0.3 3.5 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|242399679|ref|YP_002995104.1| - 1.3e-07 31.6 3.3 6.7e-06 26.0 0.8 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|242399679|ref|YP_002995104.1| - 1.8e-05 25.3 0.1 5.9e-05 23.6 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|242399679|ref|YP_002995104.1| - 3e-05 24.2 1.7 5.6e-05 23.3 0.4 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF1538 PF07556.11 gi|242399679|ref|YP_002995104.1| - 0.0025 17.2 0.1 0.0068 15.7 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) CPSase_L_D2 PF02786.17 gi|242399679|ref|YP_002995104.1| - 0.017 14.6 0.2 0.038 13.5 0.2 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Hydrolase_6 PF13344.6 gi|242399679|ref|YP_002995104.1| - 0.022 14.9 0.0 0.13 12.4 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase B12-binding PF02310.19 gi|242399679|ref|YP_002995104.1| - 0.025 14.6 3.8 8.4 6.5 0.1 3.9 2 2 0 2 2 2 0 B12 binding domain Arc_trans_TRASH PF08394.10 gi|242399680|ref|YP_002995105.1| - 3.4e-19 68.9 8.7 3.7e-19 68.7 7.4 1.7 2 0 0 2 2 1 1 Archaeal TRASH domain HTH_24 PF13412.6 gi|242399680|ref|YP_002995105.1| - 5e-17 61.2 1.6 8.1e-17 60.5 1.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|242399680|ref|YP_002995105.1| - 1.3e-13 50.5 1.8 2e-13 49.9 1.8 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|242399680|ref|YP_002995105.1| - 3.6e-08 33.2 0.7 1.3e-07 31.5 0.2 2.0 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|242399680|ref|YP_002995105.1| - 1e-07 31.7 1.0 1.6e-07 31.1 0.3 1.7 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|242399680|ref|YP_002995105.1| - 1.2e-07 31.5 0.1 2e-07 30.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Mga PF08280.11 gi|242399680|ref|YP_002995105.1| - 2.8e-07 30.5 0.4 5.5e-07 29.5 0.4 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.6 gi|242399680|ref|YP_002995105.1| - 5.8e-07 29.4 0.2 1.1e-06 28.5 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|242399680|ref|YP_002995105.1| - 1e-06 28.5 0.8 9e-06 25.5 0.2 2.2 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|242399680|ref|YP_002995105.1| - 1.1e-06 28.5 0.1 2.3e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|242399680|ref|YP_002995105.1| - 3e-06 27.2 0.1 4.9e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|242399680|ref|YP_002995105.1| - 4.6e-06 26.7 0.0 1.3e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|242399680|ref|YP_002995105.1| - 1.7e-05 24.4 0.0 3.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Mga PF05043.13 gi|242399680|ref|YP_002995105.1| - 3.2e-05 24.4 0.7 0.00051 20.6 0.0 2.6 3 0 0 3 3 2 1 Mga helix-turn-helix domain HTH_IclR PF09339.10 gi|242399680|ref|YP_002995105.1| - 3.4e-05 23.6 0.1 5.8e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|242399680|ref|YP_002995105.1| - 3.4e-05 23.5 0.2 0.0001 22.0 0.1 1.9 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|242399680|ref|YP_002995105.1| - 3.4e-05 23.9 0.0 5.7e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|242399680|ref|YP_002995105.1| - 6.9e-05 22.4 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.6 gi|242399680|ref|YP_002995105.1| - 9.8e-05 22.1 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain GntR PF00392.21 gi|242399680|ref|YP_002995105.1| - 0.0001 21.9 0.3 0.00023 20.7 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Sigma70_r4 PF04545.16 gi|242399680|ref|YP_002995105.1| - 0.00016 21.1 0.0 0.00029 20.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_41 PF14502.6 gi|242399680|ref|YP_002995105.1| - 0.00021 20.9 0.1 0.0014 18.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|242399680|ref|YP_002995105.1| - 0.00029 20.6 0.1 0.00067 19.4 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_8 PF02954.19 gi|242399680|ref|YP_002995105.1| - 0.00043 20.0 0.1 0.00086 19.0 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_29 PF13551.6 gi|242399680|ref|YP_002995105.1| - 0.00043 20.2 0.0 0.00075 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix zf-FCS PF06467.14 gi|242399680|ref|YP_002995105.1| - 0.00094 19.1 4.9 0.0016 18.3 4.9 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif HTH_36 PF13730.6 gi|242399680|ref|YP_002995105.1| - 0.0011 18.9 0.4 0.0021 18.0 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|242399680|ref|YP_002995105.1| - 0.0011 19.2 0.2 0.0029 17.9 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator HTH_CodY PF08222.11 gi|242399680|ref|YP_002995105.1| - 0.0014 18.2 0.0 0.0027 17.2 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain DUF2089 PF09862.9 gi|242399680|ref|YP_002995105.1| - 0.0017 18.4 2.1 0.0021 18.1 0.1 2.3 3 1 0 3 3 1 1 Protein of unknown function (DUF2089) HTH_19 PF12844.7 gi|242399680|ref|YP_002995105.1| - 0.0043 17.0 0.2 0.0091 16.0 0.2 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain YHS PF04945.13 gi|242399680|ref|YP_002995105.1| - 0.0053 16.8 2.6 0.011 15.8 2.2 1.8 1 1 1 2 2 1 1 YHS domain LexA_DNA_bind PF01726.16 gi|242399680|ref|YP_002995105.1| - 0.006 16.3 0.1 0.013 15.3 0.1 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_3 PF01381.22 gi|242399680|ref|YP_002995105.1| - 0.0091 16.0 0.1 0.019 15.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_17 PF12728.7 gi|242399680|ref|YP_002995105.1| - 0.0093 16.1 0.0 0.024 14.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_WhiA PF02650.14 gi|242399680|ref|YP_002995105.1| - 0.012 15.9 0.5 0.012 15.9 0.5 2.4 3 1 0 3 3 2 0 WhiA C-terminal HTH domain HTH_1 PF00126.27 gi|242399680|ref|YP_002995105.1| - 0.013 15.4 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_22 PF13309.6 gi|242399680|ref|YP_002995105.1| - 0.014 15.5 0.0 0.044 13.9 0.0 1.9 1 0 0 1 1 1 0 HTH domain AsnC_trans_reg PF01037.21 gi|242399680|ref|YP_002995105.1| - 0.017 15.0 0.1 0.041 13.9 0.1 1.6 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain DUF1441 PF07278.11 gi|242399680|ref|YP_002995105.1| - 0.018 15.0 0.1 0.04 13.8 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1441) HTH_9 PF08221.11 gi|242399680|ref|YP_002995105.1| - 0.019 15.0 0.1 0.054 13.6 0.1 1.7 2 0 0 2 2 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_7 PF02796.15 gi|242399680|ref|YP_002995105.1| - 0.023 14.8 0.0 0.073 13.2 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase FaeA PF04703.12 gi|242399680|ref|YP_002995105.1| - 0.03 14.7 0.0 0.066 13.6 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein HTH_37 PF13744.6 gi|242399680|ref|YP_002995105.1| - 0.03 14.3 0.0 0.09 12.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.17 gi|242399680|ref|YP_002995105.1| - 0.042 13.7 0.2 0.13 12.1 0.1 1.9 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|242399680|ref|YP_002995105.1| - 0.053 12.9 0.0 0.093 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 VATC PF18716.1 gi|242399680|ref|YP_002995105.1| - 0.061 13.2 4.7 0.11 12.3 4.7 1.4 1 0 0 1 1 1 0 Vms1-associating treble clef domain LIM PF00412.22 gi|242399680|ref|YP_002995105.1| - 0.068 13.4 3.3 0.11 12.7 3.3 1.4 1 0 0 1 1 1 0 LIM domain NUMOD1 PF07453.13 gi|242399680|ref|YP_002995105.1| - 0.079 13.2 0.0 0.29 11.4 0.0 1.9 1 0 0 1 1 1 0 NUMOD1 domain FeoC PF09012.10 gi|242399680|ref|YP_002995105.1| - 0.084 13.0 0.1 0.31 11.1 0.0 1.9 2 0 0 2 2 1 0 FeoC like transcriptional regulator RPA_C PF08784.11 gi|242399680|ref|YP_002995105.1| - 0.085 13.5 0.0 0.16 12.7 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_26 PF13443.6 gi|242399680|ref|YP_002995105.1| - 0.094 13.2 0.1 0.33 11.4 0.0 1.9 2 0 0 2 2 1 0 Cro/C1-type HTH DNA-binding domain Crp PF00325.20 gi|242399680|ref|YP_002995105.1| - 0.14 11.9 0.1 0.28 10.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Sgf11 PF08209.11 gi|242399680|ref|YP_002995105.1| - 0.15 11.6 4.2 5.1 6.8 0.9 2.6 3 0 0 3 3 2 0 Sgf11 (transcriptional regulation protein) Ta0938 PF11494.8 gi|242399680|ref|YP_002995105.1| - 0.59 10.4 3.8 1.1 9.5 1.8 2.4 1 1 0 2 2 2 0 Ta0938 zf-C2H2_6 PF13912.6 gi|242399680|ref|YP_002995105.1| - 1.9 8.6 11.2 5.5 7.1 0.9 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.6 gi|242399680|ref|YP_002995105.1| - 2.7 8.6 14.9 4.8 7.8 1.1 2.4 2 0 0 2 2 2 0 Zinc-finger double domain SfLAP PF11139.8 gi|242399681|ref|YP_002995106.1| - 3.9e-05 23.2 15.0 6.7e-05 22.4 15.0 1.3 1 1 0 1 1 1 1 Sap, sulfolipid-1-addressing protein DUF1269 PF06897.12 gi|242399683|ref|YP_002995108.1| - 0.16 12.3 0.0 0.2 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) Methyltransf_11 PF08241.12 gi|242399684|ref|YP_002995109.1| - 3.2e-24 85.4 0.0 5.6e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|242399684|ref|YP_002995109.1| - 2.9e-22 79.1 0.1 1.9e-21 76.5 0.0 1.9 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|242399684|ref|YP_002995109.1| - 3.5e-22 78.9 0.0 8.2e-22 77.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|242399684|ref|YP_002995109.1| - 2.8e-21 75.9 0.0 3.9e-21 75.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|242399684|ref|YP_002995109.1| - 1.3e-18 67.4 0.0 1.6e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|242399684|ref|YP_002995109.1| - 1.9e-17 63.8 0.0 3e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|242399684|ref|YP_002995109.1| - 1.5e-06 27.8 0.0 2e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|242399684|ref|YP_002995109.1| - 2.1e-06 27.3 0.0 3.5e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.20 gi|242399684|ref|YP_002995109.1| - 4e-06 26.3 0.0 5.4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|242399684|ref|YP_002995109.1| - 0.00012 21.9 0.0 0.00019 21.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|242399684|ref|YP_002995109.1| - 0.0019 17.8 0.0 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|242399684|ref|YP_002995109.1| - 0.005 15.8 0.0 0.0096 14.9 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.15 gi|242399684|ref|YP_002995109.1| - 0.0066 16.3 0.0 0.017 15.0 0.0 1.7 1 1 1 2 2 2 1 Hypothetical methyltransferase DUF2194 PF09960.9 gi|242399684|ref|YP_002995109.1| - 0.041 12.3 0.1 0.041 12.3 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2194) SHOCT PF09851.9 gi|242399685|ref|YP_002995110.1| - 2.3e-10 39.8 6.9 3.3e-10 39.3 6.9 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|242399685|ref|YP_002995110.1| - 6.1e-05 23.0 0.2 8.4e-05 22.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|242399685|ref|YP_002995110.1| - 0.0038 17.2 0.6 0.0068 16.4 0.6 1.4 1 1 0 1 1 1 1 Gas vesicle protein G DUF4083 PF13314.6 gi|242399685|ref|YP_002995110.1| - 0.0049 16.8 0.0 0.0065 16.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4083) VbhA PF18495.1 gi|242399685|ref|YP_002995110.1| - 0.016 15.1 0.4 0.022 14.6 0.4 1.3 1 0 0 1 1 1 0 Antitoxin VbhA DUF21 PF01595.20 gi|242399685|ref|YP_002995110.1| - 0.17 11.6 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 Cyclin M transmembrane N-terminal domain Apq12 PF12716.7 gi|242399685|ref|YP_002995110.1| - 7.8 6.5 9.9 11 6.1 9.9 1.2 1 0 0 1 1 1 0 Nuclear pore assembly and biogenesis EamA PF00892.20 gi|242399686|ref|YP_002995111.1| - 7.8e-43 145.9 40.2 4e-26 91.8 10.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.6 gi|242399686|ref|YP_002995111.1| - 3.4e-05 23.6 12.1 4.5e-05 23.2 10.3 2.2 1 1 0 1 1 1 1 Putative multidrug resistance efflux transporter PUNUT PF16913.5 gi|242399686|ref|YP_002995111.1| - 0.0075 15.5 4.3 0.0075 15.5 4.3 2.5 2 1 1 3 3 3 1 Purine nucleobase transmembrane transport TMEM234 PF10639.9 gi|242399686|ref|YP_002995111.1| - 0.03 14.3 1.1 0.03 14.3 1.1 3.4 2 1 0 2 2 2 0 Putative transmembrane family 234 HMA PF00403.26 gi|242399687|ref|YP_002995112.1| - 4.7e-11 43.0 0.9 8.2e-11 42.2 0.9 1.4 1 1 0 1 1 1 1 Heavy-metal-associated domain TusA PF01206.17 gi|242399687|ref|YP_002995112.1| - 0.0062 16.3 0.1 0.01 15.7 0.1 1.4 1 1 0 1 1 1 1 Sulfurtransferase TusA Fer2_BFD PF04324.15 gi|242399687|ref|YP_002995112.1| - 0.025 14.9 0.3 2 8.8 0.1 2.4 2 0 0 2 2 2 0 BFD-like [2Fe-2S] binding domain DUF302 PF03625.14 gi|242399689|ref|YP_002995114.1| - 4.5e-05 23.2 0.0 9.6e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function DUF302 CoA_binding_2 PF13380.6 gi|242399690|ref|YP_002995115.1| - 8.7e-34 116.5 0.0 9.8e-34 116.3 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|242399690|ref|YP_002995115.1| - 4.2e-12 46.6 0.0 5.9e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain ABC_transp_aux PF09822.9 gi|242399690|ref|YP_002995115.1| - 0.0023 17.5 0.1 0.0042 16.6 0.1 1.5 1 1 0 1 1 1 1 ABC-type uncharacterized transport system Semialdhyde_dh PF01118.24 gi|242399690|ref|YP_002995115.1| - 0.039 14.4 0.1 0.1 13.0 0.1 1.7 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|242399690|ref|YP_002995115.1| - 0.048 14.5 0.0 0.084 13.7 0.0 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold SpoU_sub_bind PF08032.12 gi|242399690|ref|YP_002995115.1| - 0.052 13.8 0.1 0.16 12.2 0.0 1.8 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding DpaA_N PF16924.5 gi|242399690|ref|YP_002995115.1| - 0.09 12.9 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain FTR1 PF03239.14 gi|242399691|ref|YP_002995116.1| - 1.6e-63 214.8 19.8 1.9e-63 214.5 19.8 1.0 1 0 0 1 1 1 1 Iron permease FTR1 family DUF2919 PF11143.8 gi|242399691|ref|YP_002995116.1| - 0.0075 16.6 0.3 0.0075 16.6 0.3 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF2919) Peptidase_U4 PF03419.13 gi|242399691|ref|YP_002995116.1| - 0.012 14.9 3.1 0.012 14.9 3.1 2.5 1 1 1 2 2 2 0 Sporulation factor SpoIIGA AhpC-TSA PF00578.21 gi|242399692|ref|YP_002995117.1| - 7.6e-40 135.7 0.0 9.3e-40 135.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|242399692|ref|YP_002995117.1| - 9.9e-20 70.8 0.0 1.2e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|242399692|ref|YP_002995117.1| - 1.3e-05 24.9 0.0 2.8e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin SCO1-SenC PF02630.14 gi|242399692|ref|YP_002995117.1| - 0.00067 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA_2 PF13911.6 gi|242399692|ref|YP_002995117.1| - 0.0034 17.5 0.0 0.0052 16.9 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.6 gi|242399692|ref|YP_002995117.1| - 0.0071 16.7 0.0 0.012 15.9 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like DUF3471 PF11954.8 gi|242399692|ref|YP_002995117.1| - 0.027 15.0 0.0 0.069 13.6 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3471) UvsW PF11637.8 gi|242399692|ref|YP_002995117.1| - 0.12 12.4 0.2 0.24 11.5 0.2 1.4 1 0 0 1 1 1 0 ATP-dependant DNA helicase UvsW FMN_red PF03358.15 gi|242399693|ref|YP_002995118.1| - 1.2e-27 96.5 0.0 1.7e-27 96.1 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|242399693|ref|YP_002995118.1| - 5.7e-08 32.7 0.0 1.3e-07 31.5 0.0 1.7 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|242399693|ref|YP_002995118.1| - 0.031 14.5 0.0 0.12 12.6 0.0 2.0 1 1 0 1 1 1 0 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|242399693|ref|YP_002995118.1| - 0.059 13.6 0.0 0.89 9.8 0.0 2.3 1 1 0 1 1 1 0 Flavodoxin Lin0512_fam PF09585.10 gi|242399693|ref|YP_002995118.1| - 0.17 11.9 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein (Lin0512_fam) COMP PF11598.8 gi|242399693|ref|YP_002995118.1| - 2 9.0 3.9 0.69 10.4 0.4 2.0 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein UPF0051 PF01458.17 gi|242399694|ref|YP_002995119.1| - 2.1e-33 115.8 0.1 3e-33 115.4 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) RHH_6 PF16762.5 gi|242399694|ref|YP_002995119.1| - 0.12 13.1 0.2 2.2 8.9 0.0 2.4 2 0 0 2 2 2 0 Ribbon-helix-helix domain UPF0051 PF01458.17 gi|242399695|ref|YP_002995120.1| - 7.4e-62 208.9 0.1 9.2e-62 208.6 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|242399696|ref|YP_002995121.1| - 5.6e-21 75.5 0.0 7.5e-21 75.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242399696|ref|YP_002995121.1| - 1.1e-10 41.8 0.2 1.2e-05 25.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|242399696|ref|YP_002995121.1| - 1.5e-05 24.6 0.1 0.058 12.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|242399696|ref|YP_002995121.1| - 0.00056 20.2 0.1 0.0055 17.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|242399696|ref|YP_002995121.1| - 0.00061 19.7 0.1 0.002 18.1 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_25 PF13481.6 gi|242399696|ref|YP_002995121.1| - 0.0021 17.7 0.0 0.0046 16.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|242399696|ref|YP_002995121.1| - 0.0033 17.5 0.0 0.014 15.4 0.0 2.0 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|242399696|ref|YP_002995121.1| - 0.0035 17.1 0.0 0.39 10.4 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_29 PF13555.6 gi|242399696|ref|YP_002995121.1| - 0.0063 16.2 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|242399696|ref|YP_002995121.1| - 0.0075 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|242399696|ref|YP_002995121.1| - 0.0086 16.2 0.0 0.012 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|242399696|ref|YP_002995121.1| - 0.011 14.4 0.0 1.2 7.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|242399696|ref|YP_002995121.1| - 0.022 15.2 0.1 0.051 14.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|242399696|ref|YP_002995121.1| - 0.034 13.9 0.1 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|242399696|ref|YP_002995121.1| - 0.039 14.4 0.2 0.32 11.4 0.2 2.5 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|242399696|ref|YP_002995121.1| - 0.045 13.7 0.0 0.34 10.8 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|242399696|ref|YP_002995121.1| - 0.05 13.5 0.2 0.63 9.9 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.6 gi|242399696|ref|YP_002995121.1| - 0.056 13.8 0.0 0.12 12.7 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|242399696|ref|YP_002995121.1| - 0.059 12.4 0.0 0.087 11.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Cytidylate_kin PF02224.18 gi|242399696|ref|YP_002995121.1| - 0.069 12.9 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase AAA_18 PF13238.6 gi|242399696|ref|YP_002995121.1| - 0.074 13.6 0.0 0.15 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|242399696|ref|YP_002995121.1| - 0.077 12.4 0.0 0.16 11.4 0.0 1.5 1 1 0 1 1 1 0 PhoH-like protein MutS_V PF00488.21 gi|242399696|ref|YP_002995121.1| - 0.15 12.1 0.2 9 6.3 0.0 2.3 2 0 0 2 2 2 0 MutS domain V AAA_28 PF13521.6 gi|242399696|ref|YP_002995121.1| - 0.17 12.1 0.0 0.27 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Ferritin PF00210.24 gi|242399697|ref|YP_002995122.1| - 8.2e-47 158.7 2.2 9.4e-47 158.5 2.2 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|242399697|ref|YP_002995122.1| - 0.0023 18.3 5.8 0.0035 17.7 5.8 1.4 1 0 0 1 1 1 1 Rubrerythrin Lipoprotein_10 PF03202.13 gi|242399697|ref|YP_002995122.1| - 0.0093 16.4 0.3 0.021 15.2 0.0 1.7 2 0 0 2 2 2 1 Putative mycoplasma lipoprotein, C-terminal region ThiI PF02568.14 gi|242399698|ref|YP_002995123.1| - 7.9e-53 179.0 0.0 1.1e-52 178.5 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|242399698|ref|YP_002995123.1| - 4.6e-21 75.4 1.3 4.6e-21 75.4 1.3 2.1 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|242399698|ref|YP_002995123.1| - 2e-09 37.3 0.0 3.4e-07 30.0 0.1 2.6 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|242399698|ref|YP_002995123.1| - 2.7e-05 23.1 0.1 4.3e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|242399698|ref|YP_002995123.1| - 0.00026 21.1 0.0 0.00049 20.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueH PF02677.14 gi|242399698|ref|YP_002995123.1| - 0.022 14.8 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH ATP_bind_3 PF01171.20 gi|242399698|ref|YP_002995123.1| - 0.022 14.5 0.0 8.1 6.2 0.0 2.2 2 0 0 2 2 2 0 PP-loop family Asn_synthase PF00733.21 gi|242399698|ref|YP_002995123.1| - 0.039 13.6 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase NAD_synthase PF02540.17 gi|242399698|ref|YP_002995123.1| - 0.13 11.3 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 NAD synthase ThiF PF00899.21 gi|242399699|ref|YP_002995124.1| - 2.3e-44 151.6 0.0 3.8e-44 150.9 0.0 1.2 1 0 0 1 1 1 1 ThiF family TBP PF00352.21 gi|242399699|ref|YP_002995124.1| - 2.2e-06 27.5 0.0 4.4e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) Shikimate_DH PF01488.20 gi|242399699|ref|YP_002995124.1| - 0.0014 18.7 0.0 0.0051 16.9 0.0 1.9 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|242399699|ref|YP_002995124.1| - 0.0053 17.2 0.0 0.0098 16.3 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|242399699|ref|YP_002995124.1| - 0.052 14.1 0.1 2.2 8.9 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|242399699|ref|YP_002995124.1| - 0.076 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|242399699|ref|YP_002995124.1| - 0.14 11.7 0.2 0.33 10.5 0.2 1.6 1 0 0 1 1 1 0 FAD dependent oxidoreductase ELFV_dehydrog PF00208.21 gi|242399699|ref|YP_002995124.1| - 0.24 11.1 0.0 0.4 10.4 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Heliorhodopsin PF18761.1 gi|242399700|ref|YP_002995125.1| - 1.2e-96 322.8 19.8 1.3e-96 322.6 19.8 1.0 1 0 0 1 1 1 1 Heliorhodopsin DUF3040 PF11239.8 gi|242399700|ref|YP_002995125.1| - 0.02 15.1 0.3 3.3 8.1 0.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) SecY PF00344.20 gi|242399700|ref|YP_002995125.1| - 0.1 11.9 6.9 0.073 12.3 5.6 1.4 1 1 0 1 1 1 0 SecY translocase Claudin_3 PF06653.11 gi|242399700|ref|YP_002995125.1| - 0.27 11.2 15.4 0.17 11.8 2.4 2.5 1 1 1 2 2 2 0 Tight junction protein, Claudin-like DsbD_2 PF13386.6 gi|242399700|ref|YP_002995125.1| - 3 7.7 12.7 0.57 10.1 6.8 2.3 1 1 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region DUF373 PF04123.13 gi|242399700|ref|YP_002995125.1| - 7.7 5.8 11.9 2.6 7.4 7.3 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF373) Flavodoxin_5 PF12724.7 gi|242399701|ref|YP_002995126.1| - 7.1e-11 42.5 0.0 9.1e-05 22.7 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|242399701|ref|YP_002995126.1| - 1e-07 31.8 0.4 0.011 15.4 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_4 PF12682.7 gi|242399701|ref|YP_002995126.1| - 0.0012 18.6 0.1 0.068 12.9 0.1 2.1 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.15 gi|242399701|ref|YP_002995126.1| - 0.0013 18.5 0.0 0.002 17.9 0.0 1.5 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.25 gi|242399701|ref|YP_002995126.1| - 0.0017 18.6 0.0 0.086 13.1 0.0 2.4 2 1 0 2 2 2 1 Flavodoxin TrmB PF01978.19 gi|242399702|ref|YP_002995127.1| - 1.1e-08 34.8 1.6 1.1e-08 34.8 0.3 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|242399702|ref|YP_002995127.1| - 5.1e-08 33.3 1.0 8.4e-08 32.6 0.2 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|242399702|ref|YP_002995127.1| - 1.4e-07 31.3 0.2 3.4e-07 30.1 0.2 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|242399702|ref|YP_002995127.1| - 2e-07 30.8 0.0 3.2e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|242399702|ref|YP_002995127.1| - 6.1e-06 26.0 0.1 0.0091 15.8 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|242399702|ref|YP_002995127.1| - 3.6e-05 23.7 0.2 6.2e-05 22.9 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Fe_dep_repress PF01325.19 gi|242399702|ref|YP_002995127.1| - 4.2e-05 23.7 1.7 4.5e-05 23.6 0.5 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.16 gi|242399702|ref|YP_002995127.1| - 5.3e-05 23.6 1.4 0.00013 22.3 1.3 1.9 1 1 0 1 1 1 1 Penicillinase repressor GntR PF00392.21 gi|242399702|ref|YP_002995127.1| - 6.7e-05 22.5 0.3 0.00016 21.3 0.1 1.7 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family CortBP2 PF09727.9 gi|242399702|ref|YP_002995127.1| - 0.00026 21.0 2.1 0.00035 20.5 2.1 1.1 1 0 0 1 1 1 1 Cortactin-binding protein-2 HTH_Crp_2 PF13545.6 gi|242399702|ref|YP_002995127.1| - 0.0004 20.3 0.0 0.00061 19.7 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|242399702|ref|YP_002995127.1| - 0.00049 19.6 0.2 0.00049 19.6 0.2 2.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|242399702|ref|YP_002995127.1| - 0.00059 19.7 0.3 0.0015 18.4 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|242399702|ref|YP_002995127.1| - 0.0008 19.7 0.1 0.0014 18.9 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_10 PF04967.12 gi|242399702|ref|YP_002995127.1| - 0.0023 17.7 0.9 0.031 14.1 0.3 2.7 3 0 0 3 3 3 1 HTH DNA binding domain S10_plectin PF03501.15 gi|242399702|ref|YP_002995127.1| - 0.0024 17.9 0.0 0.0048 16.9 0.0 1.4 1 1 0 1 1 1 1 Plectin/S10 domain HTH_11 PF08279.12 gi|242399702|ref|YP_002995127.1| - 0.0029 17.5 0.9 0.0079 16.1 0.4 2.1 1 1 1 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|242399702|ref|YP_002995127.1| - 0.003 17.6 0.1 0.0081 16.2 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.10 gi|242399702|ref|YP_002995127.1| - 0.014 15.3 0.6 0.037 14.0 0.2 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4364 PF14277.6 gi|242399702|ref|YP_002995127.1| - 0.015 15.1 0.1 0.027 14.2 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) LexA_DNA_bind PF01726.16 gi|242399702|ref|YP_002995127.1| - 0.02 14.6 0.5 0.2 11.5 0.2 2.5 2 2 0 2 2 2 0 LexA DNA binding domain GPP34 PF05719.11 gi|242399702|ref|YP_002995127.1| - 0.024 14.7 0.8 0.033 14.2 0.8 1.4 1 1 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) HxlR PF01638.17 gi|242399702|ref|YP_002995127.1| - 0.025 14.4 0.4 0.052 13.4 0.4 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Replic_Relax PF13814.6 gi|242399702|ref|YP_002995127.1| - 0.032 14.3 0.0 0.039 14.0 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_23 PF13384.6 gi|242399702|ref|YP_002995127.1| - 0.041 13.7 0.2 0.15 11.9 0.0 2.1 3 0 0 3 3 1 0 Homeodomain-like domain HTH_41 PF14502.6 gi|242399702|ref|YP_002995127.1| - 0.044 13.5 1.2 0.081 12.6 0.3 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|242399702|ref|YP_002995127.1| - 0.047 13.6 0.3 0.047 13.6 0.3 2.3 3 0 0 3 3 2 0 Bacterial regulatory protein, arsR family Cdc6_C PF09079.11 gi|242399702|ref|YP_002995127.1| - 0.055 13.4 0.1 0.14 12.2 0.1 1.8 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_29 PF13551.6 gi|242399702|ref|YP_002995127.1| - 0.078 13.0 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix LacI PF00356.21 gi|242399702|ref|YP_002995127.1| - 0.08 12.7 1.1 0.25 11.1 1.1 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_1 PF00126.27 gi|242399702|ref|YP_002995127.1| - 0.1 12.5 0.3 0.65 10.0 0.1 2.4 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family APAF1_C PF17908.1 gi|242399702|ref|YP_002995127.1| - 0.11 12.5 0.6 0.21 11.6 0.1 1.6 2 0 0 2 2 2 0 APAF-1 helical domain PaaX PF07848.12 gi|242399702|ref|YP_002995127.1| - 0.12 12.7 0.1 0.19 12.0 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein TBPIP PF07106.13 gi|242399702|ref|YP_002995127.1| - 0.12 12.3 0.5 0.32 11.0 0.5 1.7 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain z-alpha PF02295.17 gi|242399702|ref|YP_002995127.1| - 0.15 12.1 0.2 0.15 12.1 0.2 2.2 3 0 0 3 3 2 0 Adenosine deaminase z-alpha domain MatE PF01554.18 gi|242399703|ref|YP_002995128.1| - 7.9e-56 188.2 35.2 4.3e-33 114.3 10.4 2.9 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|242399703|ref|YP_002995128.1| - 5.8e-13 49.1 18.0 5e-12 46.1 5.4 4.8 3 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF1177 PF06675.11 gi|242399703|ref|YP_002995128.1| - 0.06 12.2 0.2 0.097 11.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1177) Tautomerase PF01361.21 gi|242399704|ref|YP_002995129.1| - 2.8e-08 33.5 1.6 3.9e-08 33.1 1.6 1.3 1 0 0 1 1 1 1 Tautomerase enzyme Spore_YhcN_YlaJ PF09580.10 gi|242399704|ref|YP_002995129.1| - 0.029 14.5 1.0 0.031 14.4 1.0 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) VbhA PF18495.1 gi|242399704|ref|YP_002995129.1| - 0.11 12.4 0.0 3.7 7.5 0.0 2.2 2 0 0 2 2 2 0 Antitoxin VbhA Ac81 PF05820.11 gi|242399705|ref|YP_002995130.1| - 0.021 14.4 3.5 0.026 14.1 3.5 1.1 1 0 0 1 1 1 0 Baculoviridae AC81 DsbD PF02683.15 gi|242399707|ref|YP_002995132.1| - 9.9e-13 48.5 22.8 1.1e-11 45.1 22.8 2.4 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|242399707|ref|YP_002995132.1| - 2.1e-09 37.6 15.7 5.1e-09 36.3 15.5 1.7 1 1 1 2 2 2 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_2 PF13098.6 gi|242399707|ref|YP_002995132.1| - 0.00018 21.9 0.0 0.00043 20.7 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|242399707|ref|YP_002995132.1| - 0.0026 17.6 0.0 0.15 11.9 0.0 2.1 2 0 0 2 2 2 1 F plasmid transfer operon protein DUF2847 PF11009.8 gi|242399707|ref|YP_002995132.1| - 0.017 15.0 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2847) Thioredoxin_4 PF13462.6 gi|242399707|ref|YP_002995132.1| - 0.02 15.0 0.2 0.28 11.3 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin DUF4040 PF13244.6 gi|242399707|ref|YP_002995132.1| - 0.024 14.8 0.7 0.024 14.8 0.7 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4040) Thioredoxin_7 PF13899.6 gi|242399707|ref|YP_002995132.1| - 0.047 13.9 0.0 0.081 13.1 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like CytB6-F_Fe-S PF08802.10 gi|242399707|ref|YP_002995132.1| - 5.7 7.1 6.2 16 5.6 0.8 3.0 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit DUF302 PF03625.14 gi|242399708|ref|YP_002995133.1| - 9.4e-17 60.7 0.3 2.9e-16 59.1 0.1 1.7 1 1 1 2 2 2 1 Domain of unknown function DUF302 NAD_binding_2 PF03446.15 gi|242399709|ref|YP_002995134.1| - 0.041 14.0 0.4 1.8 8.7 0.2 2.5 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase PDDEXK_1 PF12705.7 gi|242399709|ref|YP_002995134.1| - 0.095 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DeoRC PF00455.22 gi|242399709|ref|YP_002995134.1| - 0.099 12.6 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain Resolvase PF00239.21 gi|242399710|ref|YP_002995135.1| - 1.5e-24 86.8 0.4 1.9e-24 86.5 0.4 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|242399710|ref|YP_002995135.1| - 1.9e-13 50.4 0.7 4e-13 49.3 0.5 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MerR_1 PF13411.6 gi|242399710|ref|YP_002995135.1| - 0.00018 21.6 0.1 0.00051 20.1 0.1 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 gi|242399710|ref|YP_002995135.1| - 0.0012 18.6 0.1 0.0025 17.5 0.1 1.6 1 0 0 1 1 1 1 MerR family regulatory protein HTH_23 PF13384.6 gi|242399710|ref|YP_002995135.1| - 0.0015 18.3 0.1 0.0053 16.5 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain DUF2797 PF10977.8 gi|242399710|ref|YP_002995135.1| - 0.012 15.6 0.3 0.021 14.8 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2797) Cas_APE2256 PF09651.10 gi|242399710|ref|YP_002995135.1| - 0.073 13.0 0.5 1 9.2 0.2 2.1 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_APE2256) AbiEi_4 PF13338.6 gi|242399710|ref|YP_002995135.1| - 0.094 12.9 0.1 0.32 11.2 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin B12-binding PF02310.19 gi|242399710|ref|YP_002995135.1| - 0.15 12.1 0.0 0.76 9.8 0.0 2.1 2 1 1 3 3 3 0 B12 binding domain OrfB_Zn_ribbon PF07282.11 gi|242399711|ref|YP_002995136.1| - 5.6e-25 87.1 0.1 2.4e-24 85.0 0.0 2.1 2 1 1 3 3 3 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|242399711|ref|YP_002995136.1| - 3.1e-09 37.1 0.2 3.1e-09 37.1 0.2 1.8 2 0 0 2 2 2 1 Probable transposase C1_1 PF00130.22 gi|242399711|ref|YP_002995136.1| - 0.007 16.2 0.1 0.013 15.3 0.1 1.4 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|242399711|ref|YP_002995136.1| - 0.015 15.3 0.3 0.026 14.6 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon RRT14 PF17075.5 gi|242399711|ref|YP_002995136.1| - 0.035 14.2 0.2 0.061 13.4 0.2 1.3 1 0 0 1 1 1 0 Regular of rDNA transcription protein 14 SCP2 PF02036.17 gi|242399711|ref|YP_002995136.1| - 0.062 13.8 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 SCP-2 sterol transfer family RsgI_N PF12791.7 gi|242399711|ref|YP_002995136.1| - 0.077 12.9 1.0 3.8 7.5 0.4 3.1 2 0 0 2 2 2 0 Anti-sigma factor N-terminus CAP_assoc_N PF14504.6 gi|242399711|ref|YP_002995136.1| - 0.083 12.6 0.8 0.25 11.1 0.1 2.0 2 0 0 2 2 2 0 CAP-associated N-terminal zf-Mss51 PF13824.6 gi|242399711|ref|YP_002995136.1| - 0.13 12.3 0.2 0.73 10.0 0.8 1.9 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Vps36-NZF-N PF16988.5 gi|242399711|ref|YP_002995136.1| - 0.15 11.5 0.3 0.48 9.9 0.3 1.9 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zinc_ribbon_2 PF13240.6 gi|242399711|ref|YP_002995136.1| - 0.17 11.6 2.5 0.61 9.9 2.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Peptidase_M24 PF00557.24 gi|242399712|ref|YP_002995137.1| - 1.2e-24 87.2 0.1 1.9e-24 86.5 0.1 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|242399712|ref|YP_002995137.1| - 5e-14 53.1 0.0 5.1e-13 49.8 0.0 2.2 2 1 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Cupin_2 PF07883.11 gi|242399713|ref|YP_002995138.1| - 5.2e-15 54.9 0.0 7.9e-15 54.3 0.0 1.3 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|242399713|ref|YP_002995138.1| - 4.1e-08 33.3 0.0 4.6e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|242399713|ref|YP_002995138.1| - 2e-07 31.0 0.0 2.4e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Pirin_C PF05726.13 gi|242399713|ref|YP_002995138.1| - 0.00011 22.5 0.0 0.00017 21.9 0.0 1.3 1 1 0 1 1 1 1 Pirin C-terminal cupin domain Cupin_3 PF05899.12 gi|242399713|ref|YP_002995138.1| - 0.00022 20.8 0.0 0.00027 20.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|242399713|ref|YP_002995138.1| - 0.0044 16.6 0.0 0.0054 16.4 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.7 gi|242399713|ref|YP_002995138.1| - 0.01 15.7 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain 3-HAO PF06052.12 gi|242399713|ref|YP_002995138.1| - 0.014 15.0 0.1 0.016 14.9 0.1 1.1 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase KduI PF04962.12 gi|242399713|ref|YP_002995138.1| - 0.028 13.7 0.0 0.028 13.7 0.0 1.1 1 0 0 1 1 1 0 KduI/IolB family Cupin_6 PF12852.7 gi|242399713|ref|YP_002995138.1| - 0.059 13.1 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 Cupin DUF438 PF04282.13 gi|242399714|ref|YP_002995139.1| - 1.9e-24 85.4 1.0 4.9e-24 84.0 0.7 2.0 2 0 0 2 2 2 1 Family of unknown function (DUF438) PAS_10 PF13596.6 gi|242399714|ref|YP_002995139.1| - 3.4e-23 82.2 0.0 8.7e-23 80.9 0.0 1.7 1 0 0 1 1 1 1 PAS domain Hemerythrin PF01814.23 gi|242399714|ref|YP_002995139.1| - 6.9e-21 75.2 2.6 7.4e-21 75.1 1.5 1.6 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain PAS_4 PF08448.10 gi|242399714|ref|YP_002995139.1| - 6.8e-05 23.1 0.0 0.0002 21.6 0.0 1.8 1 0 0 1 1 1 1 PAS fold sCache_3_3 PF17202.4 gi|242399714|ref|YP_002995139.1| - 0.09 13.2 0.1 0.2 12.1 0.1 1.6 1 0 0 1 1 1 0 Single cache domain 3 EF-hand_1 PF00036.32 gi|242399714|ref|YP_002995139.1| - 0.12 12.0 1.1 1.4 8.7 0.0 3.4 3 0 0 3 3 3 0 EF hand DUF1947 PF09183.10 gi|242399714|ref|YP_002995139.1| - 0.35 11.2 2.6 2.1 8.7 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1947) Lactamase_B PF00753.27 gi|242399715|ref|YP_002995140.1| - 6.7e-09 36.0 0.0 1.2e-08 35.2 0.0 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|242399715|ref|YP_002995140.1| - 0.00091 18.8 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.25 gi|242399715|ref|YP_002995140.1| - 0.013 15.7 0.0 0.034 14.4 0.0 1.7 1 0 0 1 1 1 0 Flavodoxin Lactamase_B_6 PF16661.5 gi|242399715|ref|YP_002995140.1| - 0.053 12.9 0.0 0.094 12.1 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain OFCC1 PF15680.5 gi|242399715|ref|YP_002995140.1| - 0.1 13.2 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 Orofacial cleft 1 candidate gene 1 protein DUF1858 PF08984.11 gi|242399716|ref|YP_002995141.1| - 3.9e-18 65.4 0.0 7e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1858) TusA PF01206.17 gi|242399716|ref|YP_002995141.1| - 1.5e-08 34.3 0.0 3.5e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|242399716|ref|YP_002995141.1| - 4.7e-06 26.4 0.1 1.1e-05 25.2 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) HTH_27 PF13463.6 gi|242399716|ref|YP_002995141.1| - 0.098 13.2 0.1 1.2 9.7 0.0 2.6 3 0 0 3 3 3 0 Winged helix DNA-binding domain SRP9-21 PF05486.12 gi|242399716|ref|YP_002995141.1| - 0.11 12.9 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle 9 kDa protein (SRP9) Prismane PF03063.20 gi|242399717|ref|YP_002995142.1| - 4.3e-114 382.0 0.0 2.3e-96 323.5 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family HTH_3 PF01381.22 gi|242399718|ref|YP_002995143.1| - 0.00028 20.9 0.8 0.0006 19.8 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_5 PF01022.20 gi|242399718|ref|YP_002995143.1| - 0.00046 20.0 0.2 0.00081 19.2 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|242399718|ref|YP_002995143.1| - 0.00047 19.6 0.4 0.0011 18.5 0.4 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 gi|242399718|ref|YP_002995143.1| - 0.00059 19.7 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|242399718|ref|YP_002995143.1| - 0.0022 18.0 0.9 0.0045 17.0 0.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|242399718|ref|YP_002995143.1| - 0.0091 15.9 0.1 0.015 15.2 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|242399718|ref|YP_002995143.1| - 0.012 15.6 0.0 0.044 13.7 0.1 1.9 2 0 0 2 2 2 0 MarR family DUF1798 PF08807.10 gi|242399718|ref|YP_002995143.1| - 0.03 14.5 0.0 0.08 13.1 0.0 1.6 2 0 0 2 2 2 0 Bacterial domain of unknown function (DUF1798) HTH_38 PF13936.6 gi|242399718|ref|YP_002995143.1| - 0.035 13.9 0.8 0.058 13.2 0.8 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|242399718|ref|YP_002995143.1| - 0.081 12.8 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r3 PF04539.16 gi|242399718|ref|YP_002995143.1| - 0.081 13.0 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 Sigma70_ECF PF07638.11 gi|242399718|ref|YP_002995143.1| - 0.092 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor HTH_23 PF13384.6 gi|242399718|ref|YP_002995143.1| - 0.096 12.5 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Cro PF09048.10 gi|242399718|ref|YP_002995143.1| - 0.11 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Cro SDF PF00375.18 gi|242399719|ref|YP_002995144.1| - 1.8e-107 359.8 31.4 2e-107 359.6 31.4 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family TIM21 PF08294.11 gi|242399719|ref|YP_002995144.1| - 0.25 11.2 0.6 0.64 9.9 0.6 1.6 1 0 0 1 1 1 0 TIM21 Thioredoxin_3 PF13192.6 gi|242399721|ref|YP_002995146.1| - 1.7e-11 44.0 0.3 4.1e-11 42.8 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|242399721|ref|YP_002995146.1| - 2.3e-05 24.5 0.1 5.9e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 Glutaredoxin DSBA PF01323.20 gi|242399721|ref|YP_002995146.1| - 9.4e-05 22.3 0.3 0.033 14.0 0.0 2.4 2 1 1 3 3 3 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|242399721|ref|YP_002995146.1| - 0.00023 21.3 0.2 0.035 14.2 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin Thioredoxin PF00085.20 gi|242399721|ref|YP_002995146.1| - 0.0029 17.6 0.0 0.0034 17.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|242399721|ref|YP_002995146.1| - 0.0045 17.4 0.2 0.086 13.3 0.2 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain DUF1223 PF06764.11 gi|242399721|ref|YP_002995146.1| - 0.025 14.6 0.0 0.17 11.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1223) TYW3 PF02676.14 gi|242399722|ref|YP_002995147.1| - 7.3e-48 162.7 0.3 9.8e-48 162.3 0.3 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 EAP30 PF04157.16 gi|242399722|ref|YP_002995147.1| - 0.017 14.4 0.1 0.035 13.4 0.1 1.5 2 0 0 2 2 2 0 EAP30/Vps36 family Cpn60_TCP1 PF00118.24 gi|242399723|ref|YP_002995148.1| - 9.3e-189 628.1 24.9 1.1e-188 627.9 24.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_5 PF07728.14 gi|242399723|ref|YP_002995148.1| - 0.11 12.5 0.1 0.39 10.7 0.1 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) TrwC PF08751.11 gi|242399723|ref|YP_002995148.1| - 0.15 11.5 0.9 0.24 10.9 0.1 1.7 2 0 0 2 2 2 0 TrwC relaxase TPR_12 PF13424.6 gi|242399724|ref|YP_002995149.1| - 5.2e-17 61.9 16.3 2.9e-08 33.9 1.2 4.0 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|242399724|ref|YP_002995149.1| - 1.3e-10 41.2 6.6 0.012 16.4 0.0 6.0 4 2 2 6 6 6 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|242399724|ref|YP_002995149.1| - 3.5e-10 39.2 2.8 0.00024 20.9 0.0 4.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|242399724|ref|YP_002995149.1| - 2.7e-09 37.1 0.2 0.0021 18.6 0.0 4.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|242399724|ref|YP_002995149.1| - 2.9e-08 33.2 17.2 0.00045 20.1 0.4 5.8 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|242399724|ref|YP_002995149.1| - 5.1e-08 32.5 20.0 0.00043 20.3 0.3 6.2 7 0 0 7 7 5 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|242399724|ref|YP_002995149.1| - 2.5e-07 31.1 9.3 0.0036 17.8 0.3 4.4 2 1 3 5 5 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|242399724|ref|YP_002995149.1| - 3.9e-07 30.6 1.6 0.02 15.5 0.0 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat SNAP PF14938.6 gi|242399724|ref|YP_002995149.1| - 1.2e-06 28.2 4.1 0.0035 16.8 0.1 2.6 1 1 1 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_10 PF13374.6 gi|242399724|ref|YP_002995149.1| - 1.2e-05 25.0 2.6 0.13 12.2 0.0 4.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|242399724|ref|YP_002995149.1| - 4e-05 23.1 0.1 0.00022 20.7 0.0 1.8 1 1 1 2 2 2 1 MalT-like TPR region RPN7 PF10602.9 gi|242399724|ref|YP_002995149.1| - 9.3e-05 22.2 7.2 0.0024 17.6 2.7 3.5 1 1 1 2 2 2 1 26S proteasome subunit RPN7 PPR PF01535.20 gi|242399724|ref|YP_002995149.1| - 0.00019 21.4 5.3 2.5 8.5 0.0 5.4 5 0 0 5 5 5 2 PPR repeat TPR_21 PF09976.9 gi|242399724|ref|YP_002995149.1| - 0.00072 19.3 2.3 0.0012 18.6 0.8 2.1 1 1 1 2 2 2 1 Tetratricopeptide repeat-like domain TPR_1 PF00515.28 gi|242399724|ref|YP_002995149.1| - 0.0016 18.1 0.5 0.0016 18.1 0.5 5.7 7 0 0 7 7 7 1 Tetratricopeptide repeat LppC PF04348.13 gi|242399724|ref|YP_002995149.1| - 0.0032 16.3 0.2 0.017 14.0 0.1 2.1 1 1 1 2 2 2 1 LppC putative lipoprotein ANAPC3 PF12895.7 gi|242399724|ref|YP_002995149.1| - 0.0037 17.5 5.4 0.3 11.3 0.1 3.2 2 1 1 3 3 2 1 Anaphase-promoting complex, cyclosome, subunit 3 ANAPC5 PF12862.7 gi|242399724|ref|YP_002995149.1| - 0.0038 17.2 4.1 0.39 10.8 0.1 3.2 2 1 1 3 3 3 1 Anaphase-promoting complex subunit 5 SPOB_a PF14689.6 gi|242399724|ref|YP_002995149.1| - 0.0087 15.7 7.5 4.1 7.2 0.3 4.6 4 0 0 4 4 4 2 Sensor_kinase_SpoOB-type, alpha-helical domain ATP13 PF12921.7 gi|242399724|ref|YP_002995149.1| - 0.0092 15.8 0.1 0.28 11.0 0.0 2.8 1 1 1 2 2 2 1 Mitochondrial ATPase expression TPR_5 PF12688.7 gi|242399724|ref|YP_002995149.1| - 0.015 15.5 0.7 11 6.3 0.0 3.2 2 1 1 3 3 3 0 Tetratrico peptide repeat L27_1 PF09058.10 gi|242399724|ref|YP_002995149.1| - 0.046 13.7 1.6 0.41 10.7 0.4 2.9 2 0 0 2 2 2 0 L27_1 MIT PF04212.18 gi|242399724|ref|YP_002995149.1| - 0.069 13.2 0.3 0.069 13.2 0.3 4.4 5 1 0 5 5 4 0 MIT (microtubule interacting and transport) domain SapB_1 PF05184.15 gi|242399724|ref|YP_002995149.1| - 0.083 12.9 0.6 0.31 11.1 0.6 2.1 1 0 0 1 1 1 0 Saposin-like type B, region 1 TPR_17 PF13431.6 gi|242399724|ref|YP_002995149.1| - 0.12 12.8 0.9 40 4.9 0.1 3.8 4 0 0 4 4 3 0 Tetratricopeptide repeat DUF5618 PF18498.1 gi|242399724|ref|YP_002995149.1| - 0.15 12.2 0.3 0.15 12.2 0.3 3.6 2 1 2 4 4 4 0 Domain of unknown function (DUF5618) DUF2225 PF09986.9 gi|242399724|ref|YP_002995149.1| - 0.64 9.7 6.8 0.44 10.2 3.5 2.4 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) Radical_SAM PF04055.21 gi|242399724|ref|YP_002995149.1| - 1.8 8.9 6.6 26 5.1 0.0 3.9 1 1 1 3 3 3 0 Radical SAM superfamily EF1_GNE PF00736.19 gi|242399725|ref|YP_002995150.1| - 1.3e-14 54.1 0.0 1.7e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain SBP_bac_5 PF00496.22 gi|242399727|ref|YP_002995152.1| - 2.3e-22 79.5 15.9 6.1e-22 78.1 15.9 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4690 PF15756.5 gi|242399727|ref|YP_002995152.1| - 0.035 14.7 3.6 0.085 13.5 3.6 1.6 1 0 0 1 1 1 0 Small Novel Rich in Cartilage SSP160 PF06933.11 gi|242399727|ref|YP_002995152.1| - 0.11 10.6 16.0 0.17 10.1 16.0 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 TMEM154 PF15102.6 gi|242399727|ref|YP_002995152.1| - 5.9 6.8 7.9 13 5.7 7.9 1.5 1 0 0 1 1 1 0 TMEM154 protein family BPD_transp_1 PF00528.22 gi|242399729|ref|YP_002995154.1| - 1.6e-37 129.0 18.8 1.6e-37 129.0 18.8 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component HCV_NS2 PF01538.18 gi|242399729|ref|YP_002995154.1| - 0.38 10.4 3.9 0.21 11.2 0.6 2.1 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS2 PrgI PF12666.7 gi|242399729|ref|YP_002995154.1| - 10 6.9 23.1 1.6 9.5 6.2 4.7 4 1 0 4 4 4 0 PrgI family protein BPD_transp_1 PF00528.22 gi|242399730|ref|YP_002995155.1| - 1.5e-27 96.5 13.6 1.5e-27 96.5 13.6 2.3 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|242399730|ref|YP_002995155.1| - 2.3e-05 24.3 0.2 2.3e-05 24.3 0.2 3.2 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|242399731|ref|YP_002995156.1| - 1.1e-28 100.5 0.0 1.5e-28 100.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|242399731|ref|YP_002995156.1| - 4.1e-20 72.1 0.2 6.6e-20 71.4 0.2 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|242399731|ref|YP_002995156.1| - 1e-05 25.5 0.2 0.00024 21.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|242399731|ref|YP_002995156.1| - 0.0054 16.6 0.1 0.014 15.3 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase SMC_N PF02463.19 gi|242399731|ref|YP_002995156.1| - 0.018 14.5 0.5 0.14 11.6 0.1 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC_tran PF00005.27 gi|242399732|ref|YP_002995157.1| - 3e-32 112.0 0.0 4e-32 111.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|242399732|ref|YP_002995157.1| - 1.8e-18 66.8 0.1 3.1e-18 66.1 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|242399732|ref|YP_002995157.1| - 6e-05 23.0 0.2 0.0036 17.1 0.0 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system PRK PF00485.18 gi|242399732|ref|YP_002995157.1| - 0.0033 17.2 0.0 0.0049 16.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.6 gi|242399732|ref|YP_002995157.1| - 0.0038 17.5 0.4 0.015 15.6 0.4 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|242399732|ref|YP_002995157.1| - 0.0041 16.6 0.0 0.011 15.2 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|242399732|ref|YP_002995157.1| - 0.02 14.8 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|242399732|ref|YP_002995157.1| - 0.029 14.8 0.0 0.069 13.6 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|242399732|ref|YP_002995157.1| - 0.055 13.2 0.0 0.097 12.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|242399732|ref|YP_002995157.1| - 0.064 13.7 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Bombesin PF02044.17 gi|242399732|ref|YP_002995157.1| - 0.15 12.2 0.3 0.29 11.3 0.3 1.5 1 0 0 1 1 1 0 Bombesin-like peptide RsgA_GTPase PF03193.16 gi|242399732|ref|YP_002995157.1| - 0.15 11.9 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|242399732|ref|YP_002995157.1| - 0.17 11.6 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain NAD_synthase PF02540.17 gi|242399734|ref|YP_002995159.1| - 9e-90 300.0 0.1 1e-89 299.8 0.1 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|242399734|ref|YP_002995159.1| - 1.1e-06 27.7 0.2 4.5e-05 22.4 0.2 3.0 3 1 0 3 3 3 1 tRNA methyl transferase QueC PF06508.13 gi|242399734|ref|YP_002995159.1| - 3.7e-06 26.6 0.0 0.00084 18.9 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|242399734|ref|YP_002995159.1| - 0.024 14.3 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase ATP_bind_3 PF01171.20 gi|242399734|ref|YP_002995159.1| - 0.038 13.8 0.0 0.084 12.6 0.0 1.7 1 1 0 1 1 1 0 PP-loop family ThiI PF02568.14 gi|242399734|ref|YP_002995159.1| - 0.088 12.4 0.2 2.1 7.9 0.1 2.3 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) EamA PF00892.20 gi|242399735|ref|YP_002995160.1| - 2.9e-55 186.2 35.0 4.8e-29 101.3 8.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|242399735|ref|YP_002995160.1| - 1.3e-13 51.0 13.6 5.2e-08 32.6 6.1 2.0 1 1 1 2 2 2 2 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|242399735|ref|YP_002995160.1| - 6.8e-07 29.3 8.5 0.0013 18.8 0.2 2.5 2 0 0 2 2 2 2 Putative transmembrane family 234 UAA PF08449.11 gi|242399735|ref|YP_002995160.1| - 0.00022 20.5 22.2 0.0004 19.7 2.2 3.2 1 1 0 2 2 2 1 UAA transporter family PUNUT PF16913.5 gi|242399735|ref|YP_002995160.1| - 0.0073 15.6 17.4 0.033 13.4 1.0 2.5 2 1 0 2 2 2 2 Purine nucleobase transmembrane transport DMT_YdcZ PF04657.13 gi|242399735|ref|YP_002995160.1| - 1.2 9.4 15.5 1.1 9.5 5.0 3.5 2 1 0 2 2 2 0 Putative inner membrane exporter, YdcZ PNTB PF02233.16 gi|242399735|ref|YP_002995160.1| - 1.5 7.6 6.4 0.35 9.8 2.9 1.7 2 1 0 2 2 2 0 NAD(P) transhydrogenase beta subunit SLC35F PF06027.12 gi|242399735|ref|YP_002995160.1| - 6.6 6.2 27.0 4 6.9 14.2 3.1 1 1 2 3 3 3 0 Solute carrier family 35 Gln-synt_C PF00120.24 gi|242399736|ref|YP_002995161.1| - 6.2e-124 413.5 0.0 7.5e-124 413.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|242399736|ref|YP_002995161.1| - 2.1e-20 72.2 0.0 4.2e-20 71.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DUF61 PF01886.16 gi|242399737|ref|YP_002995162.1| - 1.9e-35 121.7 3.3 2.1e-35 121.5 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Baculo_11_kDa PF06143.11 gi|242399738|ref|YP_002995163.1| - 0.022 14.3 0.2 0.022 14.3 0.2 2.2 2 1 0 2 2 2 0 Baculovirus 11 kDa family DUF4354 PF14263.6 gi|242399739|ref|YP_002995164.1| - 0.054 13.3 1.7 0.14 12.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4354) DUF3439 PF11921.8 gi|242399739|ref|YP_002995164.1| - 0.058 13.4 7.6 0.079 12.9 2.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3439) LPG_synthase_TM PF03706.13 gi|242399739|ref|YP_002995164.1| - 0.15 11.6 0.0 0.28 10.7 0.0 1.4 1 0 0 1 1 1 0 Lysylphosphatidylglycerol synthase TM region EamA PF00892.20 gi|242399740|ref|YP_002995165.1| - 5.3e-41 140.0 42.7 5.5e-22 78.4 16.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family DNA_primase_S PF01896.19 gi|242399741|ref|YP_002995166.1| - 6e-16 59.0 0.1 1.9e-14 54.1 0.0 2.2 2 0 0 2 2 2 2 DNA primase small subunit DNA_primase_lrg PF04104.14 gi|242399742|ref|YP_002995167.1| - 6e-32 111.1 0.0 1.5e-31 109.8 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Lipoprotein_3 PF00938.17 gi|242399742|ref|YP_002995167.1| - 0.0037 17.4 0.1 0.009 16.2 0.1 1.6 1 0 0 1 1 1 1 Lipoprotein GCS PF03074.16 gi|242399742|ref|YP_002995167.1| - 0.023 14.1 0.1 0.036 13.4 0.1 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase ATPase PF06745.13 gi|242399743|ref|YP_002995168.1| - 1.9e-79 266.2 0.2 2.2e-79 266.1 0.2 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|242399743|ref|YP_002995168.1| - 7.4e-10 38.0 0.7 1.4e-09 37.1 0.7 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|242399743|ref|YP_002995168.1| - 3.1e-09 36.7 0.0 4.4e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|242399743|ref|YP_002995168.1| - 0.00041 19.8 0.0 0.00069 19.0 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain T2SSE PF00437.20 gi|242399743|ref|YP_002995168.1| - 0.00087 18.4 0.1 0.0014 17.8 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Sigma54_activat PF00158.26 gi|242399743|ref|YP_002995168.1| - 0.0011 18.7 0.0 0.0023 17.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.6 gi|242399743|ref|YP_002995168.1| - 0.0029 17.9 0.1 0.0053 17.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|242399743|ref|YP_002995168.1| - 0.004 16.7 0.0 0.006 16.1 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_14 PF13173.6 gi|242399743|ref|YP_002995168.1| - 0.0042 17.1 0.1 0.0065 16.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|242399743|ref|YP_002995168.1| - 0.006 16.6 0.0 0.015 15.3 0.0 1.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_24 PF13479.6 gi|242399743|ref|YP_002995168.1| - 0.0086 15.8 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|242399743|ref|YP_002995168.1| - 0.017 15.4 0.0 0.024 15.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|242399743|ref|YP_002995168.1| - 0.021 14.6 0.1 0.043 13.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|242399743|ref|YP_002995168.1| - 0.024 14.6 0.7 0.085 12.8 0.7 1.8 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|242399743|ref|YP_002995168.1| - 0.029 14.3 0.2 0.09 12.7 0.1 1.8 1 1 1 2 2 2 0 NACHT domain AAA_18 PF13238.6 gi|242399743|ref|YP_002995168.1| - 0.029 14.9 0.2 0.085 13.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|242399743|ref|YP_002995168.1| - 0.034 14.5 0.0 0.056 13.8 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|242399743|ref|YP_002995168.1| - 0.049 13.5 0.8 0.08 12.9 0.7 1.5 1 1 0 1 1 1 0 NTPase TsaE PF02367.17 gi|242399743|ref|YP_002995168.1| - 0.068 13.2 0.0 0.31 11.0 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|242399743|ref|YP_002995168.1| - 0.085 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|242399743|ref|YP_002995168.1| - 0.086 12.4 0.2 0.19 11.3 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|242399743|ref|YP_002995168.1| - 0.096 12.8 0.0 0.14 12.3 0.0 1.3 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|242399743|ref|YP_002995168.1| - 0.1 11.5 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|242399743|ref|YP_002995168.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family SRP54 PF00448.22 gi|242399743|ref|YP_002995168.1| - 0.17 11.5 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|242399743|ref|YP_002995168.1| - 0.18 12.0 0.1 0.26 11.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|242399743|ref|YP_002995168.1| - 2.9 8.4 6.1 1.3 9.5 3.4 1.8 1 1 1 2 2 2 0 AAA domain ATPase PF06745.13 gi|242399744|ref|YP_002995169.1| - 2e-27 96.0 0.2 7e-27 94.3 0.2 1.7 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|242399744|ref|YP_002995169.1| - 4.4e-05 23.1 0.0 0.00011 21.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain PAXNEB PF05625.11 gi|242399744|ref|YP_002995169.1| - 7e-05 22.1 0.1 0.0024 17.1 0.0 2.0 2 0 0 2 2 2 1 PAXNEB protein Roc PF08477.13 gi|242399744|ref|YP_002995169.1| - 0.001 19.3 0.0 0.026 14.8 0.0 2.3 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_24 PF13479.6 gi|242399744|ref|YP_002995169.1| - 0.0032 17.2 0.1 0.02 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|242399744|ref|YP_002995169.1| - 0.0052 16.8 0.1 0.01 15.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|242399744|ref|YP_002995169.1| - 0.014 14.6 0.0 0.028 13.7 0.0 1.5 1 0 0 1 1 1 0 Rad51 RecA PF00154.21 gi|242399744|ref|YP_002995169.1| - 0.017 14.6 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein G-alpha PF00503.20 gi|242399744|ref|YP_002995169.1| - 0.049 12.8 0.6 0.09 11.9 0.6 1.7 1 1 0 1 1 1 0 G-protein alpha subunit FtsK_SpoIIIE PF01580.18 gi|242399744|ref|YP_002995169.1| - 0.057 12.8 0.0 0.34 10.2 0.0 2.2 2 1 1 3 3 3 0 FtsK/SpoIIIE family TniB PF05621.11 gi|242399744|ref|YP_002995169.1| - 0.073 12.5 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial TniB protein Pox_A32 PF04665.12 gi|242399744|ref|YP_002995169.1| - 0.093 12.2 0.2 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 Poxvirus A32 protein TsaE PF02367.17 gi|242399744|ref|YP_002995169.1| - 0.098 12.7 0.0 0.23 11.5 0.0 1.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|242399744|ref|YP_002995169.1| - 0.14 12.4 0.0 0.41 10.9 0.0 1.7 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|242399744|ref|YP_002995169.1| - 0.15 12.4 0.0 0.2 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain PABP PF00658.18 gi|242399744|ref|YP_002995169.1| - 0.19 11.9 0.6 0.88 9.8 0.1 2.4 3 0 0 3 3 3 0 Poly-adenylate binding protein, unique domain Methyltrans_SAM PF10672.9 gi|242399746|ref|YP_002995171.1| - 1.2e-22 80.4 0.0 1.6e-22 80.1 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Met_10 PF02475.16 gi|242399746|ref|YP_002995171.1| - 1.2e-19 70.8 0.3 2e-19 70.2 0.3 1.4 1 0 0 1 1 1 1 Met-10+ like-protein PUA_3 PF17785.1 gi|242399746|ref|YP_002995171.1| - 4.9e-16 58.3 0.0 1.1e-15 57.2 0.0 1.6 1 0 0 1 1 1 1 PUA-like domain PUA PF01472.20 gi|242399746|ref|YP_002995171.1| - 2e-15 56.5 0.5 4.9e-15 55.3 0.2 1.9 2 0 0 2 2 2 1 PUA domain Methyltransf_31 PF13847.6 gi|242399746|ref|YP_002995171.1| - 5.1e-15 55.6 0.2 9.8e-15 54.7 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|242399746|ref|YP_002995171.1| - 2.7e-13 50.0 0.0 5.1e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|242399746|ref|YP_002995171.1| - 3.4e-12 46.4 0.2 5.9e-12 45.6 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|242399746|ref|YP_002995171.1| - 3.4e-11 43.0 0.0 6.2e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|242399746|ref|YP_002995171.1| - 2.4e-09 37.8 0.0 5.3e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|242399746|ref|YP_002995171.1| - 1.8e-08 33.9 0.9 3.9e-08 32.7 0.9 1.6 1 0 0 1 1 1 1 O-methyltransferase MTS PF05175.14 gi|242399746|ref|YP_002995171.1| - 1.4e-06 28.0 0.1 2.5e-06 27.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|242399746|ref|YP_002995171.1| - 1.7e-06 27.4 0.1 2.4e-06 27.0 0.1 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase UPF0020 PF01170.18 gi|242399746|ref|YP_002995171.1| - 1.2e-05 25.1 0.1 0.0025 17.5 0.0 2.8 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 gi|242399746|ref|YP_002995171.1| - 0.0001 22.3 0.1 0.00026 21.0 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|242399746|ref|YP_002995171.1| - 0.00011 22.8 0.0 0.00032 21.3 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|242399746|ref|YP_002995171.1| - 0.00039 20.6 0.1 0.00074 19.7 0.1 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase UPF0113 PF03657.13 gi|242399746|ref|YP_002995171.1| - 0.00097 19.4 0.2 0.0045 17.2 0.1 2.2 2 1 0 2 2 1 1 UPF0113 PUA domain Methyltransf_23 PF13489.6 gi|242399746|ref|YP_002995171.1| - 0.0048 16.7 0.0 0.0082 16.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|242399746|ref|YP_002995171.1| - 0.0085 15.7 2.1 0.13 11.9 0.0 2.6 2 1 0 2 2 2 1 16S rRNA methyltransferase RsmB/F ADH_zinc_N PF00107.26 gi|242399746|ref|YP_002995171.1| - 0.019 14.9 0.8 0.054 13.5 0.2 2.1 3 0 0 3 3 3 0 Zinc-binding dehydrogenase Methyltransf_10 PF05971.12 gi|242399747|ref|YP_002995172.1| - 7.9e-11 41.8 0.1 2.1e-10 40.4 0.1 1.7 1 1 0 1 1 1 1 RNA methyltransferase PrmA PF06325.13 gi|242399747|ref|YP_002995172.1| - 3.2e-07 30.1 0.0 4.3e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|242399747|ref|YP_002995172.1| - 2.8e-06 27.0 0.0 7.9e-05 22.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|242399747|ref|YP_002995172.1| - 3.1e-06 27.0 0.0 4.9e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|242399747|ref|YP_002995172.1| - 5.4e-06 27.0 0.0 1.6e-05 25.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|242399747|ref|YP_002995172.1| - 0.00019 21.4 0.0 0.00036 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|242399747|ref|YP_002995172.1| - 0.00021 21.1 0.0 0.0003 20.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|242399747|ref|YP_002995172.1| - 0.00028 20.1 0.0 0.00041 19.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|242399747|ref|YP_002995172.1| - 0.0011 18.5 0.1 0.0019 17.7 0.1 1.4 1 0 0 1 1 1 1 Putative methyltransferase Cons_hypoth95 PF03602.15 gi|242399747|ref|YP_002995172.1| - 0.0031 17.2 0.0 0.0041 16.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|242399747|ref|YP_002995172.1| - 0.0033 18.0 0.0 0.009 16.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|242399747|ref|YP_002995172.1| - 0.0049 16.6 0.0 0.0073 16.1 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase CMAS PF02353.20 gi|242399747|ref|YP_002995172.1| - 0.0066 15.8 0.0 0.0095 15.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|242399747|ref|YP_002995172.1| - 0.011 15.6 0.0 0.024 14.5 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase domain ADH_zinc_N PF00107.26 gi|242399747|ref|YP_002995172.1| - 0.02 14.9 0.1 0.053 13.5 0.1 1.7 1 1 0 1 1 1 0 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|242399747|ref|YP_002995172.1| - 0.022 14.0 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_12 PF08242.12 gi|242399747|ref|YP_002995172.1| - 0.033 14.9 0.0 0.075 13.8 0.0 1.6 2 0 0 2 2 1 0 Methyltransferase domain UPF0146 PF03686.13 gi|242399747|ref|YP_002995172.1| - 0.056 13.3 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Peptidase_M20 PF01546.28 gi|242399748|ref|YP_002995173.1| - 1.5e-37 129.3 0.0 1.8e-37 129.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|242399748|ref|YP_002995173.1| - 2e-20 72.7 0.0 5.9e-20 71.2 0.0 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|242399748|ref|YP_002995173.1| - 6.9e-05 22.6 0.0 9.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 OPT PF03169.15 gi|242399749|ref|YP_002995174.1| - 2.3e-102 343.6 48.2 2.9e-102 343.3 48.2 1.1 1 0 0 1 1 1 1 OPT oligopeptide transporter protein Mannosyl_trans2 PF04188.13 gi|242399749|ref|YP_002995174.1| - 0.16 11.2 1.8 1.8 7.8 2.5 2.1 2 0 0 2 2 2 0 Mannosyltransferase (PIG-V) DUF2839 PF10999.8 gi|242399749|ref|YP_002995174.1| - 0.79 10.1 3.1 2.4 8.6 0.9 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2839) Lactamase_B_2 PF12706.7 gi|242399750|ref|YP_002995175.1| - 2.5e-22 79.4 0.1 3.1e-22 79.1 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|242399750|ref|YP_002995175.1| - 5.3e-08 32.9 0.0 1.1e-07 31.9 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|242399750|ref|YP_002995175.1| - 0.021 14.8 0.0 0.042 13.8 0.0 1.5 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily DUF1525 PF07511.11 gi|242399750|ref|YP_002995175.1| - 0.027 14.6 0.0 0.065 13.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1525) PGM_PMM_I PF02878.16 gi|242399751|ref|YP_002995176.1| - 7e-44 148.9 0.0 1.6e-43 147.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|242399751|ref|YP_002995176.1| - 2.9e-24 85.7 0.0 5.6e-24 84.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|242399751|ref|YP_002995176.1| - 1.1e-12 48.0 0.2 2.7e-12 46.7 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|242399751|ref|YP_002995176.1| - 2.9e-09 37.1 0.0 7.3e-09 35.8 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III UPF0146 PF03686.13 gi|242399752|ref|YP_002995177.1| - 3.3e-26 91.7 0.0 4.3e-26 91.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) ADH_zinc_N PF00107.26 gi|242399752|ref|YP_002995177.1| - 0.013 15.5 0.0 0.023 14.7 0.0 1.4 1 1 0 1 1 1 0 Zinc-binding dehydrogenase TrkA_N PF02254.18 gi|242399752|ref|YP_002995177.1| - 0.16 12.3 0.0 0.25 11.6 0.0 1.2 1 0 0 1 1 1 0 TrkA-N domain Regulator_TrmB PF11495.8 gi|242399754|ref|YP_002995179.1| - 9.3e-47 159.2 0.2 1.2e-46 158.9 0.2 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|242399754|ref|YP_002995179.1| - 3.3e-24 84.5 0.0 6.6e-24 83.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|242399754|ref|YP_002995179.1| - 0.016 15.3 0.0 0.045 13.9 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|242399754|ref|YP_002995179.1| - 0.12 12.7 0.0 0.33 11.3 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|242399754|ref|YP_002995179.1| - 0.15 11.8 0.0 0.39 10.5 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain Prot_ATP_OB_N PF17758.1 gi|242399754|ref|YP_002995179.1| - 0.21 11.3 0.0 0.38 10.4 0.0 1.4 1 0 0 1 1 1 0 Proteasomal ATPase OB N-terminal domain Glyco_transf_5 PF08323.11 gi|242399755|ref|YP_002995180.1| - 2e-34 119.4 0.0 2.8e-34 118.9 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|242399755|ref|YP_002995180.1| - 8.4e-25 87.3 0.0 1.4e-24 86.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|242399755|ref|YP_002995180.1| - 4.7e-23 82.1 0.0 9.3e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|242399755|ref|YP_002995180.1| - 1.3e-13 51.3 0.6 2.6e-12 47.0 0.5 2.7 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|242399755|ref|YP_002995180.1| - 7e-07 29.8 0.0 2.5e-06 28.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycogen_syn PF05693.13 gi|242399755|ref|YP_002995180.1| - 0.0069 15.0 0.0 2.8 6.4 0.0 2.8 3 0 0 3 3 3 2 Glycogen synthase Glyco_trans_1_2 PF13524.6 gi|242399755|ref|YP_002995180.1| - 0.024 15.0 0.0 0.084 13.3 0.0 2.0 1 0 0 1 1 1 0 Glycosyl transferases group 1 HIT PF01230.23 gi|242399756|ref|YP_002995181.1| - 1.5e-10 41.7 0.0 1.7e-10 41.5 0.0 1.0 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|242399756|ref|YP_002995181.1| - 2.1e-08 34.6 0.0 2.5e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|242399756|ref|YP_002995181.1| - 0.08 12.8 0.5 0.13 12.1 0.5 1.5 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 tRNA_edit PF04073.15 gi|242399757|ref|YP_002995182.1| - 4.1e-25 88.2 0.3 1.7e-24 86.3 0.0 1.9 2 0 0 2 2 2 1 Aminoacyl-tRNA editing domain MazG-like PF12643.7 gi|242399757|ref|YP_002995182.1| - 1.7e-19 69.9 8.3 1.7e-19 69.9 8.3 2.4 3 0 0 3 3 3 1 MazG-like family MazG PF03819.17 gi|242399757|ref|YP_002995182.1| - 1.7e-05 24.9 5.3 1.7e-05 24.9 5.3 2.0 2 1 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|242399757|ref|YP_002995182.1| - 0.012 16.0 0.5 0.031 14.7 0.5 1.8 1 0 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase dsDNA_bind PF01984.20 gi|242399758|ref|YP_002995183.1| - 0.047 14.0 0.5 0.047 14.0 0.5 2.0 2 0 0 2 2 2 0 Double-stranded DNA-binding domain YqzH PF14164.6 gi|242399758|ref|YP_002995183.1| - 0.11 12.6 0.2 0.19 11.8 0.2 1.4 1 0 0 1 1 1 0 YqzH-like protein DUF4704 PF15787.5 gi|242399758|ref|YP_002995183.1| - 0.12 11.6 0.2 0.11 11.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4704) HAD_2 PF13419.6 gi|242399758|ref|YP_002995183.1| - 0.78 9.8 3.0 17 5.4 0.1 2.0 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF3487 PF11990.8 gi|242399759|ref|YP_002995184.1| - 0.033 14.1 0.5 0.037 13.9 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) SieB PF14163.6 gi|242399759|ref|YP_002995184.1| - 0.041 13.4 0.7 0.068 12.7 0.7 1.4 1 1 0 1 1 1 0 Super-infection exclusion protein B Phage_holin_3_6 PF07332.11 gi|242399759|ref|YP_002995184.1| - 0.15 12.1 6.5 0.18 11.8 6.5 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4131 PF13567.6 gi|242399759|ref|YP_002995184.1| - 0.18 11.4 2.3 0.22 11.2 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2207 PF09972.9 gi|242399759|ref|YP_002995184.1| - 0.58 8.9 4.7 0.67 8.6 4.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) OapA_N PF08525.11 gi|242399759|ref|YP_002995184.1| - 0.83 9.7 0.1 0.83 9.7 0.1 2.1 2 0 0 2 2 2 0 Opacity-associated protein A N-terminal motif NapE PF06796.11 gi|242399759|ref|YP_002995184.1| - 9.5 5.8 8.9 2.8 7.5 1.2 2.3 1 1 1 2 2 2 0 Periplasmic nitrate reductase protein NapE TPP_enzyme_C PF02775.21 gi|242399760|ref|YP_002995185.1| - 2.2e-32 112.0 0.1 4.3e-32 111.0 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|242399760|ref|YP_002995185.1| - 2.4e-13 50.4 0.0 3.7e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|242399760|ref|YP_002995185.1| - 1.6e-09 37.2 9.6 8.5e-06 25.4 1.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|242399760|ref|YP_002995185.1| - 8.5e-07 29.0 6.5 2.1e-06 27.8 6.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242399760|ref|YP_002995185.1| - 3.9e-06 26.6 15.1 0.00091 19.2 0.6 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|242399760|ref|YP_002995185.1| - 5.6e-06 26.9 6.8 1.8e-05 25.2 6.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242399760|ref|YP_002995185.1| - 7.6e-06 25.9 6.7 2e-05 24.6 6.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|242399760|ref|YP_002995185.1| - 0.00016 21.6 15.1 0.0079 16.2 1.1 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|242399760|ref|YP_002995185.1| - 0.00016 21.7 11.8 0.0031 17.6 10.9 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|242399760|ref|YP_002995185.1| - 0.00071 19.2 0.1 0.32 10.6 0.1 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_4 PF12800.7 gi|242399760|ref|YP_002995185.1| - 0.006 17.0 10.2 0.31 11.6 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Transket_pyr PF02779.24 gi|242399760|ref|YP_002995185.1| - 0.015 14.9 0.0 2 8.0 0.0 2.5 2 1 0 2 2 2 0 Transketolase, pyrimidine binding domain Fer4_8 PF13183.6 gi|242399760|ref|YP_002995185.1| - 0.029 14.8 5.8 1 9.8 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain PFOR_II PF17147.4 gi|242399760|ref|YP_002995185.1| - 0.062 13.6 0.1 0.14 12.5 0.1 1.6 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II DXP_synthase_N PF13292.6 gi|242399760|ref|YP_002995185.1| - 0.069 12.4 0.5 4.8 6.3 0.0 2.2 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_16 PF13484.6 gi|242399760|ref|YP_002995185.1| - 0.26 12.2 9.7 0.23 12.4 1.1 2.6 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|242399760|ref|YP_002995185.1| - 0.31 12.1 13.6 0.065 14.2 3.9 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|242399760|ref|YP_002995185.1| - 0.7 10.5 7.1 6.9 7.3 1.1 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|242399760|ref|YP_002995185.1| - 0.81 10.3 11.9 0.52 10.9 2.0 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|242399760|ref|YP_002995185.1| - 0.83 10.4 11.1 4.1 8.2 2.1 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF4152 PF13680.6 gi|242399761|ref|YP_002995186.1| - 2.5e-113 377.0 0.7 2.9e-113 376.8 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4152) Diphthami_syn_2 PF01902.17 gi|242399762|ref|YP_002995187.1| - 1.6e-83 279.5 2.1 1.8e-83 279.3 2.1 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|242399762|ref|YP_002995187.1| - 2e-06 27.5 0.0 4.5e-06 26.3 0.0 1.6 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|242399762|ref|YP_002995187.1| - 0.0051 16.4 0.0 0.012 15.2 0.0 1.7 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|242399762|ref|YP_002995187.1| - 0.0092 14.8 0.0 0.02 13.7 0.0 1.6 1 1 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|242399762|ref|YP_002995187.1| - 0.076 12.8 0.0 0.7 9.6 0.0 2.1 1 1 0 1 1 1 0 PP-loop family Inos-1-P_synth PF01658.17 gi|242399763|ref|YP_002995188.1| - 3.6e-19 69.0 0.0 7.7e-19 68.0 0.0 1.6 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|242399763|ref|YP_002995188.1| - 1.1e-13 51.3 0.5 4.9e-13 49.1 0.6 2.0 2 1 0 2 2 2 1 Myo-inositol-1-phosphate synthase DHHA1 PF02272.19 gi|242399764|ref|YP_002995189.1| - 2.7e-13 50.5 1.2 5.2e-13 49.6 0.8 1.8 2 0 0 2 2 2 1 DHHA1 domain tRNA-synt_2c PF01411.19 gi|242399764|ref|YP_002995189.1| - 1.9e-12 46.5 0.0 3.4e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|242399764|ref|YP_002995189.1| - 6.1e-11 42.2 1.1 1.1e-10 41.5 0.1 2.0 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain Yuri_gagarin PF15934.5 gi|242399764|ref|YP_002995189.1| - 0.028 14.2 0.3 0.048 13.5 0.3 1.3 1 0 0 1 1 1 0 Yuri gagarin CorC_HlyC PF03471.17 gi|242399764|ref|YP_002995189.1| - 0.062 13.3 0.7 1.4 9.0 0.0 2.8 3 0 0 3 3 3 0 Transporter associated domain UvrD_C PF13361.6 gi|242399764|ref|YP_002995189.1| - 1.3 8.3 5.7 1.8 7.9 0.5 2.4 1 1 1 2 2 2 0 UvrD-like helicase C-terminal domain ATP-synt_D PF01813.17 gi|242399765|ref|YP_002995190.1| - 4e-61 206.3 13.2 4.6e-61 206.1 13.2 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Tmemb_cc2 PF10267.9 gi|242399765|ref|YP_002995190.1| - 0.029 13.5 0.2 0.029 13.5 0.2 1.9 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein CCDC92 PF14916.6 gi|242399765|ref|YP_002995190.1| - 0.042 13.6 0.3 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 Coiled-coil domain of unknown function MutS_IV PF05190.18 gi|242399765|ref|YP_002995190.1| - 0.071 13.5 3.6 11 6.4 0.1 3.2 2 1 1 3 3 3 0 MutS family domain IV DUF948 PF06103.11 gi|242399765|ref|YP_002995190.1| - 0.13 12.6 2.6 5.5 7.3 0.4 2.7 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) HNOBA PF07701.14 gi|242399765|ref|YP_002995190.1| - 0.13 11.7 0.2 0.25 10.8 0.2 1.4 1 0 0 1 1 1 0 Heme NO binding associated DUF16 PF01519.16 gi|242399765|ref|YP_002995190.1| - 0.18 12.3 0.2 0.18 12.3 0.2 2.2 2 1 0 2 2 2 0 Protein of unknown function DUF16 GAS PF13851.6 gi|242399765|ref|YP_002995190.1| - 0.36 10.2 11.3 0.098 12.0 1.0 2.4 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding Laminin_II PF06009.12 gi|242399765|ref|YP_002995190.1| - 0.77 9.8 7.0 0.23 11.5 1.2 2.3 2 1 0 2 2 2 0 Laminin Domain II ATP-synt_ab PF00006.25 gi|242399766|ref|YP_002995191.1| - 7.9e-69 231.5 0.0 1.1e-68 231.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|242399766|ref|YP_002995191.1| - 1.9e-13 50.7 3.1 1.9e-13 50.7 3.1 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|242399766|ref|YP_002995191.1| - 0.00026 21.1 1.1 0.00089 19.4 1.1 1.9 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|242399767|ref|YP_002995192.1| - 1.5e-93 312.3 0.0 2.3e-93 311.8 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|242399767|ref|YP_002995192.1| - 5e-49 165.2 0.3 8.9e-49 164.4 0.3 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|242399767|ref|YP_002995192.1| - 1.4e-14 54.3 4.1 4.4e-14 52.8 4.1 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|242399767|ref|YP_002995192.1| - 0.033 14.5 0.0 0.071 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_F PF01990.17 gi|242399768|ref|YP_002995193.1| - 6.5e-19 68.0 0.6 1.2e-18 67.2 0.6 1.4 1 1 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|242399769|ref|YP_002995194.1| - 3e-67 227.5 14.8 3.4e-67 227.3 14.8 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF4176 PF13780.6 gi|242399769|ref|YP_002995194.1| - 0.088 12.9 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4176) vATP-synt_E PF01991.18 gi|242399770|ref|YP_002995195.1| - 1.2e-37 129.3 21.6 1.3e-37 129.2 21.6 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.12 gi|242399770|ref|YP_002995195.1| - 0.0022 17.9 2.0 0.0039 17.1 2.0 1.3 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.18 gi|242399770|ref|YP_002995195.1| - 0.028 14.5 12.3 0.028 14.5 12.3 2.6 2 1 1 3 3 3 0 ATP synthase B/B' CF(0) DUF3540 PF12059.8 gi|242399770|ref|YP_002995195.1| - 0.12 12.2 2.3 0.19 11.6 1.6 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3540) V-ATPase_G_2 PF16999.5 gi|242399770|ref|YP_002995195.1| - 0.35 11.3 16.7 0.1 13.0 12.7 2.2 2 0 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit DUF3552 PF12072.8 gi|242399770|ref|YP_002995195.1| - 0.47 9.8 26.0 1.2 8.5 10.6 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) NolV PF06635.12 gi|242399770|ref|YP_002995195.1| - 0.76 9.1 7.6 1.2 8.4 0.9 2.2 1 1 1 2 2 2 0 Nodulation protein NolV CinA_KH PF18146.1 gi|242399770|ref|YP_002995195.1| - 2.9 8.1 12.8 4.1 7.6 0.1 4.7 2 1 2 4 4 4 0 Damage-inducible protein CinA KH domain WBS_methylT PF12589.8 gi|242399770|ref|YP_002995195.1| - 3.3 8.5 6.3 6.6 7.6 6.3 1.5 1 0 0 1 1 1 0 Methyltransferase involved in Williams-Beuren syndrome DivIVA PF05103.13 gi|242399770|ref|YP_002995195.1| - 5.2 7.2 23.6 1.6 8.8 12.8 3.6 3 1 0 3 3 3 0 DivIVA protein ATP-synt_C PF00137.21 gi|242399771|ref|YP_002995196.1| - 2.2e-30 104.8 27.7 3.4e-17 62.5 10.6 2.3 2 0 0 2 2 2 2 ATP synthase subunit C V_ATPase_I PF01496.19 gi|242399772|ref|YP_002995197.1| - 1.2e-32 112.8 19.9 8.3e-22 76.9 1.6 3.0 3 1 0 3 3 3 2 V-type ATPase 116kDa subunit family V_ATPase_I_N PF18670.1 gi|242399772|ref|YP_002995197.1| - 0.0062 16.9 0.0 0.018 15.4 0.0 1.8 1 0 0 1 1 1 1 V-type ATPase subunit I, N-terminal domain Tektin PF03148.14 gi|242399772|ref|YP_002995197.1| - 0.053 12.3 1.3 0.1 11.3 1.3 1.4 1 0 0 1 1 1 0 Tektin family DUF1192 PF06698.11 gi|242399772|ref|YP_002995197.1| - 0.097 12.7 1.1 0.32 11.1 1.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) AMP-binding_C PF13193.6 gi|242399772|ref|YP_002995197.1| - 0.1 13.6 0.3 7 7.7 0.0 3.2 2 1 1 3 3 3 0 AMP-binding enzyme C-terminal domain DUF1759 PF03564.15 gi|242399772|ref|YP_002995197.1| - 0.12 12.4 2.3 0.31 11.0 0.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1759) Phlebovirus_NSM PF07246.11 gi|242399772|ref|YP_002995197.1| - 0.17 11.2 1.7 5 6.4 0.1 2.2 2 0 0 2 2 2 0 Phlebovirus nonstructural protein NS-M EBV-NA3 PF05009.12 gi|242399772|ref|YP_002995197.1| - 0.23 11.0 0.0 0.82 9.2 0.0 1.8 2 0 0 2 2 2 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) DUF5082 PF16888.5 gi|242399772|ref|YP_002995197.1| - 0.25 11.6 1.9 0.25 11.6 0.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) UPF0242 PF06785.11 gi|242399772|ref|YP_002995197.1| - 1.1 9.4 9.5 0.24 11.5 2.3 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus TMPIT PF07851.13 gi|242399772|ref|YP_002995197.1| - 3.8 6.7 8.5 1.9 7.6 0.6 2.8 3 0 0 3 3 3 0 TMPIT-like protein RecG_N PF17190.4 gi|242399772|ref|YP_002995197.1| - 6.2 7.6 9.9 2.8 8.7 2.6 2.9 2 0 0 2 2 2 0 RecG N-terminal helical domain V-ATPase_G_2 PF16999.5 gi|242399773|ref|YP_002995198.1| - 4.7e-06 27.0 24.3 5.4e-06 26.8 24.3 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|242399773|ref|YP_002995198.1| - 1.1e-05 25.6 27.5 7.4e-05 22.9 19.3 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|242399773|ref|YP_002995198.1| - 0.0074 15.7 27.2 0.014 14.8 16.0 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) V-ATPase_G PF03179.15 gi|242399773|ref|YP_002995198.1| - 0.012 16.1 24.7 0.018 15.5 24.7 1.2 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|242399773|ref|YP_002995198.1| - 0.081 13.0 22.6 7.6 6.6 22.6 2.2 1 1 0 1 1 1 0 DivIVA protein DUF883 PF05957.13 gi|242399773|ref|YP_002995198.1| - 0.092 13.4 9.3 0.58 10.8 3.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) HrpE PF06188.12 gi|242399773|ref|YP_002995198.1| - 0.11 12.3 9.8 0.08 12.8 7.6 1.7 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E RRF PF01765.19 gi|242399773|ref|YP_002995198.1| - 0.58 10.1 17.1 0.78 9.7 17.1 1.2 1 0 0 1 1 1 0 Ribosome recycling factor SMBP PF16785.5 gi|242399773|ref|YP_002995198.1| - 1.2 9.3 18.5 19 5.5 18.6 2.0 1 1 0 1 1 1 0 Small metal-binding protein hDGE_amylase PF14701.6 gi|242399773|ref|YP_002995198.1| - 3.9 6.5 8.5 4.4 6.3 8.5 1.0 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain DUF262 PF03235.14 gi|242399773|ref|YP_002995198.1| - 4.9 7.3 9.3 5.4 7.1 9.3 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF262 Mitofilin PF09731.9 gi|242399773|ref|YP_002995198.1| - 5.2 5.8 20.4 6 5.6 20.4 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DUF2072 PF09845.9 gi|242399773|ref|YP_002995198.1| - 8.5 6.6 11.0 12 6.2 11.0 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein TrkA_N PF02254.18 gi|242399774|ref|YP_002995199.1| - 1.3e-31 109.2 0.7 2.9e-31 108.1 0.4 1.7 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|242399774|ref|YP_002995199.1| - 9.1e-10 38.2 0.1 1e-08 34.9 0.1 2.5 3 0 0 3 3 2 1 TrkA-C domain ApbA PF02558.16 gi|242399774|ref|YP_002995199.1| - 2.1e-07 30.7 0.1 3.5e-07 30.0 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|242399774|ref|YP_002995199.1| - 1.3e-06 28.1 0.1 1.6e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NmrA PF05368.13 gi|242399774|ref|YP_002995199.1| - 1.9e-05 24.3 0.5 5e-05 23.0 0.2 1.9 2 1 1 3 3 3 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|242399774|ref|YP_002995199.1| - 3.5e-05 24.1 0.3 9.7e-05 22.6 0.2 1.9 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|242399774|ref|YP_002995199.1| - 6.8e-05 22.3 0.3 0.0001 21.7 0.3 1.4 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.6 gi|242399774|ref|YP_002995199.1| - 8.8e-05 22.5 0.1 0.0002 21.3 0.0 1.7 2 0 0 2 2 2 1 NAD(P)H-binding Shikimate_DH PF01488.20 gi|242399774|ref|YP_002995199.1| - 0.00021 21.3 0.4 0.00055 20.0 0.3 1.8 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|242399774|ref|YP_002995199.1| - 0.00035 20.5 0.3 0.0008 19.3 0.3 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|242399774|ref|YP_002995199.1| - 0.00089 19.7 0.3 0.003 18.0 0.3 2.1 1 1 0 1 1 1 1 Putative NAD(P)-binding Erp_C PF06780.11 gi|242399774|ref|YP_002995199.1| - 0.0013 18.7 1.0 0.0022 18.0 1.0 1.4 1 0 0 1 1 1 1 Erp protein C-terminus XdhC_C PF13478.6 gi|242399774|ref|YP_002995199.1| - 0.0013 19.2 0.0 0.0022 18.5 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.27 gi|242399774|ref|YP_002995199.1| - 0.0033 17.9 0.1 0.011 16.3 0.1 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|242399774|ref|YP_002995199.1| - 0.0059 16.6 0.1 0.02 14.9 0.0 1.9 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DapB_N PF01113.20 gi|242399774|ref|YP_002995199.1| - 0.0071 16.5 0.8 1.1 9.3 0.3 2.6 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.19 gi|242399774|ref|YP_002995199.1| - 0.01 15.2 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|242399774|ref|YP_002995199.1| - 0.011 15.3 0.1 0.038 13.5 0.1 1.8 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase F420_oxidored PF03807.17 gi|242399774|ref|YP_002995199.1| - 0.013 16.1 0.7 0.036 14.6 0.1 2.2 2 2 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|242399774|ref|YP_002995199.1| - 0.014 14.7 0.1 0.017 14.4 0.1 1.3 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|242399774|ref|YP_002995199.1| - 0.015 14.6 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Epimerase PF01370.21 gi|242399774|ref|YP_002995199.1| - 0.017 14.6 0.1 0.025 14.0 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|242399774|ref|YP_002995199.1| - 0.017 14.1 0.2 0.026 13.5 0.2 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family PglD_N PF17836.1 gi|242399774|ref|YP_002995199.1| - 0.021 15.4 0.1 0.072 13.7 0.1 1.9 1 0 0 1 1 1 0 PglD N-terminal domain UPF0146 PF03686.13 gi|242399774|ref|YP_002995199.1| - 0.028 14.3 0.1 0.061 13.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) NAD_binding_2 PF03446.15 gi|242399774|ref|YP_002995199.1| - 0.037 14.2 0.1 0.14 12.3 0.1 2.0 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Rossmann-like PF10727.9 gi|242399774|ref|YP_002995199.1| - 0.05 13.5 0.1 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 Rossmann-like domain Gp_dh_N PF00044.24 gi|242399774|ref|YP_002995199.1| - 0.051 13.9 0.1 0.12 12.7 0.1 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DFP PF04127.15 gi|242399774|ref|YP_002995199.1| - 0.058 13.2 0.3 0.77 9.6 0.0 2.1 1 1 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein Stimulus_sens_1 PF13756.6 gi|242399774|ref|YP_002995199.1| - 0.1 13.2 0.0 0.24 12.0 0.0 1.6 1 0 0 1 1 1 0 Stimulus-sensing domain adh_short PF00106.25 gi|242399774|ref|YP_002995199.1| - 0.15 11.5 0.1 0.27 10.7 0.1 1.5 1 0 0 1 1 1 0 short chain dehydrogenase NAD_binding_8 PF13450.6 gi|242399774|ref|YP_002995199.1| - 0.18 12.1 0.0 0.37 11.1 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain SecD_SecF PF02355.16 gi|242399775|ref|YP_002995200.1| - 3.2e-15 56.0 7.8 6e-15 55.1 7.8 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|242399775|ref|YP_002995200.1| - 6e-05 22.4 0.0 0.00015 21.1 0.0 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.15 gi|242399775|ref|YP_002995200.1| - 6.9e-05 21.9 8.7 6.9e-05 21.9 8.7 1.8 2 0 0 2 2 2 1 MMPL family ACR_tran PF00873.19 gi|242399775|ref|YP_002995200.1| - 0.036 11.7 8.8 0.059 11.0 8.8 1.2 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family Patched PF02460.18 gi|242399775|ref|YP_002995200.1| - 0.12 10.4 7.8 0.2 9.7 7.8 1.3 1 0 0 1 1 1 0 Patched family SecD_SecF PF02355.16 gi|242399776|ref|YP_002995201.1| - 1.6e-29 102.7 11.5 2.4e-29 102.1 11.5 1.3 1 0 0 1 1 1 1 Protein export membrane protein Patched PF02460.18 gi|242399776|ref|YP_002995201.1| - 1.1e-05 23.8 6.5 1.5e-05 23.4 6.5 1.2 1 0 0 1 1 1 1 Patched family Sec_GG PF07549.14 gi|242399776|ref|YP_002995201.1| - 0.0063 16.0 0.2 0.048 13.2 0.1 2.4 2 0 0 2 2 2 1 SecD/SecF GG Motif MMPL PF03176.15 gi|242399776|ref|YP_002995201.1| - 0.011 14.7 11.3 0.016 14.1 11.3 1.2 1 0 0 1 1 1 0 MMPL family BAT PF15915.5 gi|242399776|ref|YP_002995201.1| - 0.017 15.0 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 GAF and HTH_10 associated domain AdoMet_dc PF02675.15 gi|242399777|ref|YP_002995202.1| - 4.7e-38 129.7 0.0 5.8e-38 129.4 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Spc7 PF08317.11 gi|242399778|ref|YP_002995203.1| - 7.9e-06 25.0 51.8 0.0067 15.3 28.5 2.4 1 1 1 2 2 2 2 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|242399778|ref|YP_002995203.1| - 1.2e-05 25.4 63.6 0.0041 17.1 24.7 3.8 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlaC_arch PF05377.11 gi|242399778|ref|YP_002995203.1| - 0.0002 21.7 47.5 0.45 10.9 4.1 6.6 3 2 4 7 7 7 3 Flagella accessory protein C (FlaC) HTH_38 PF13936.6 gi|242399778|ref|YP_002995203.1| - 0.00027 20.6 0.3 0.0012 18.6 0.3 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain GAS PF13851.6 gi|242399778|ref|YP_002995203.1| - 0.00043 19.7 61.7 0.0036 16.7 18.0 3.3 1 1 2 3 3 3 1 Growth-arrest specific micro-tubule binding HTH_20 PF12840.7 gi|242399778|ref|YP_002995203.1| - 0.00092 19.2 0.2 0.01 15.9 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain bZIP_2 PF07716.15 gi|242399778|ref|YP_002995203.1| - 0.00095 19.2 8.8 0.00095 19.2 8.8 6.0 4 1 2 6 6 4 1 Basic region leucine zipper HTH_23 PF13384.6 gi|242399778|ref|YP_002995203.1| - 0.0013 18.4 0.1 0.0041 16.9 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain Seryl_tRNA_N PF02403.22 gi|242399778|ref|YP_002995203.1| - 0.0025 18.0 55.5 0.0028 17.9 14.7 3.5 1 1 2 3 3 3 1 Seryl-tRNA synthetase N-terminal domain DUF3450 PF11932.8 gi|242399778|ref|YP_002995203.1| - 0.0029 16.9 36.8 0.033 13.5 4.9 3.4 1 1 2 3 3 3 2 Protein of unknown function (DUF3450) HTH_11 PF08279.12 gi|242399778|ref|YP_002995203.1| - 0.0031 17.4 0.4 0.021 14.7 0.0 2.7 2 0 0 2 2 1 1 HTH domain GerE PF00196.19 gi|242399778|ref|YP_002995203.1| - 0.0062 16.1 0.4 0.023 14.3 0.1 2.1 2 0 0 2 2 1 1 Bacterial regulatory proteins, luxR family HTH_5 PF01022.20 gi|242399778|ref|YP_002995203.1| - 0.0068 16.3 0.5 4.5 7.2 0.0 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|242399778|ref|YP_002995203.1| - 0.0073 15.8 0.0 0.029 13.9 0.0 2.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TACC_C PF05010.14 gi|242399778|ref|YP_002995203.1| - 0.0079 16.0 22.6 0.0079 16.0 22.6 2.5 1 1 1 2 2 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF3584 PF12128.8 gi|242399778|ref|YP_002995203.1| - 0.0085 13.7 32.3 0.0098 13.5 32.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Cep57_CLD_2 PF14197.6 gi|242399778|ref|YP_002995203.1| - 0.0098 16.0 9.2 0.0098 16.0 9.2 5.5 2 1 3 5 5 5 1 Centrosome localisation domain of PPC89 HTH_31 PF13560.6 gi|242399778|ref|YP_002995203.1| - 0.016 15.6 1.9 0.095 13.1 0.3 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain Laminin_II PF06009.12 gi|242399778|ref|YP_002995203.1| - 0.016 15.2 32.0 0.035 14.1 12.4 3.9 1 1 3 4 4 4 0 Laminin Domain II TPR_MLP1_2 PF07926.12 gi|242399778|ref|YP_002995203.1| - 0.019 15.0 51.2 0.068 13.2 35.6 4.0 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein Citrate_ly_lig PF08218.11 gi|242399778|ref|YP_002995203.1| - 0.023 14.4 3.0 0.037 13.7 3.0 1.4 1 0 0 1 1 1 0 Citrate lyase ligase C-terminal domain DivIC PF04977.15 gi|242399778|ref|YP_002995203.1| - 0.026 14.3 51.9 0.06 13.1 7.1 5.5 3 2 2 5 5 4 0 Septum formation initiator ATG16 PF08614.11 gi|242399778|ref|YP_002995203.1| - 0.038 14.2 41.3 0.17 12.1 27.3 2.6 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) HTH_29 PF13551.6 gi|242399778|ref|YP_002995203.1| - 0.063 13.3 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Baculo_PEP_C PF04513.12 gi|242399778|ref|YP_002995203.1| - 0.067 13.2 5.9 0.73 9.9 0.5 3.4 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|242399778|ref|YP_002995203.1| - 0.11 13.0 12.1 3.9 8.0 0.6 4.0 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein EzrA PF06160.12 gi|242399778|ref|YP_002995203.1| - 0.26 9.4 49.1 0.43 8.7 20.3 2.1 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA UPF0242 PF06785.11 gi|242399778|ref|YP_002995203.1| - 0.28 11.3 54.5 0.077 13.1 27.4 2.9 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus MscS_porin PF12795.7 gi|242399778|ref|YP_002995203.1| - 0.35 10.4 32.1 0.12 11.9 28.0 2.4 2 1 0 2 2 1 0 Mechanosensitive ion channel porin domain MAD PF05557.13 gi|242399778|ref|YP_002995203.1| - 0.37 9.1 54.6 0.48 8.7 54.6 1.2 1 0 0 1 1 1 0 Mitotic checkpoint protein DUF4201 PF13870.6 gi|242399778|ref|YP_002995203.1| - 0.37 10.5 51.8 6.5 6.4 26.0 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) DUF1664 PF07889.12 gi|242399778|ref|YP_002995203.1| - 0.39 10.8 30.9 0.25 11.4 7.0 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) HALZ PF02183.18 gi|242399778|ref|YP_002995203.1| - 0.4 10.9 48.9 0.085 13.1 4.1 6.6 3 1 4 7 7 6 0 Homeobox associated leucine zipper BLOC1_2 PF10046.9 gi|242399778|ref|YP_002995203.1| - 0.47 10.8 43.6 0.33 11.3 12.9 4.7 2 1 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin_2 PF14523.6 gi|242399778|ref|YP_002995203.1| - 0.49 10.8 29.2 1.7 9.1 1.9 3.8 1 1 2 3 3 3 0 Syntaxin-like protein Phage_GP20 PF06810.11 gi|242399778|ref|YP_002995203.1| - 0.5 10.2 46.8 1.6 8.5 25.7 3.2 1 1 1 2 2 2 0 Phage minor structural protein GP20 FapA PF03961.13 gi|242399778|ref|YP_002995203.1| - 0.51 8.9 47.8 6.2 5.3 27.5 2.4 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF4407 PF14362.6 gi|242399778|ref|YP_002995203.1| - 0.53 9.6 24.5 2.4 7.4 14.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DNA_topoisoIV PF00521.20 gi|242399778|ref|YP_002995203.1| - 0.54 9.1 36.2 0.0072 15.3 23.7 2.1 1 1 1 2 2 2 0 DNA gyrase/topoisomerase IV, subunit A Retrotrans_gag PF03732.17 gi|242399778|ref|YP_002995203.1| - 0.59 10.4 11.8 0.19 12.0 2.1 3.0 1 1 2 3 3 3 0 Retrotransposon gag protein Bacillus_HBL PF05791.11 gi|242399778|ref|YP_002995203.1| - 0.67 9.8 21.2 0.25 11.2 5.9 2.7 1 1 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) WXG100 PF06013.12 gi|242399778|ref|YP_002995203.1| - 0.94 9.8 8.3 5.5 7.3 0.2 4.3 3 2 1 4 4 3 0 Proteins of 100 residues with WXG HTH_40 PF14493.6 gi|242399778|ref|YP_002995203.1| - 1.1 9.7 28.5 5.2e+03 -2.0 28.5 4.2 1 1 0 1 1 0 0 Helix-turn-helix domain TelA PF05816.11 gi|242399778|ref|YP_002995203.1| - 1.2 8.2 36.8 0.23 10.5 5.6 2.6 1 1 1 2 2 2 0 Toxic anion resistance protein (TelA) ZapB PF06005.12 gi|242399778|ref|YP_002995203.1| - 1.3 9.6 64.0 9 6.8 5.7 5.1 1 1 2 3 3 2 0 Cell division protein ZapB APG6_N PF17675.1 gi|242399778|ref|YP_002995203.1| - 1.5 9.3 66.1 0.45 11.0 24.7 3.7 1 1 2 3 3 3 0 Apg6 coiled-coil region YabA PF06156.13 gi|242399778|ref|YP_002995203.1| - 1.5 9.5 44.5 2.5 8.8 12.4 4.4 1 1 3 4 4 4 0 Initiation control protein YabA Flagellin_N PF00669.20 gi|242399778|ref|YP_002995203.1| - 1.5 8.9 5.7 8.1 6.6 1.6 2.6 2 0 0 2 2 2 0 Bacterial flagellin N-terminal helical region Prp19 PF08606.11 gi|242399778|ref|YP_002995203.1| - 1.6 8.8 16.7 0.47 10.5 0.2 4.5 4 1 1 5 5 3 0 Prp19/Pso4-like PRKG1_interact PF15898.5 gi|242399778|ref|YP_002995203.1| - 1.7 9.6 48.6 9.8 7.2 3.5 4.0 1 1 1 3 3 3 0 cGMP-dependent protein kinase interacting domain THOC7 PF05615.13 gi|242399778|ref|YP_002995203.1| - 1.7 8.9 44.4 0.05 13.9 15.1 2.8 1 1 1 2 2 2 0 Tho complex subunit 7 DUF724 PF05266.14 gi|242399778|ref|YP_002995203.1| - 2 8.2 45.7 0.43 10.4 18.8 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF724) Jnk-SapK_ap_N PF09744.9 gi|242399778|ref|YP_002995203.1| - 2.4 8.3 55.5 0.89 9.8 24.7 2.9 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 Prominin PF05478.11 gi|242399778|ref|YP_002995203.1| - 3.1 5.6 22.6 21 2.9 22.1 2.1 1 1 0 1 1 1 0 Prominin AAA_13 PF13166.6 gi|242399778|ref|YP_002995203.1| - 3.2 6.3 38.4 5.4 5.5 37.7 1.6 1 1 1 2 2 2 0 AAA domain HemX PF04375.14 gi|242399778|ref|YP_002995203.1| - 3.3 6.9 24.6 3.9 6.7 5.1 3.0 1 1 2 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase Snapin_Pallidin PF14712.6 gi|242399778|ref|YP_002995203.1| - 4.3 7.8 34.9 0.12 12.9 7.5 3.6 1 1 2 3 3 3 0 Snapin/Pallidin HAUS-augmin3 PF14932.6 gi|242399778|ref|YP_002995203.1| - 4.9 6.7 41.7 5.2 6.6 18.3 2.5 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Nnf1 PF03980.14 gi|242399778|ref|YP_002995203.1| - 5.5 7.4 44.6 2.5 8.5 4.3 5.0 4 2 0 4 4 3 0 Nnf1 TolA_bind_tri PF16331.5 gi|242399778|ref|YP_002995203.1| - 5.8 7.1 29.3 2.9 8.0 8.8 4.8 2 2 3 5 5 5 0 TolA binding protein trimerisation ADIP PF11559.8 gi|242399778|ref|YP_002995203.1| - 6.4 6.9 39.6 3.9 7.6 18.3 3.6 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding MbeD_MobD PF04899.12 gi|242399778|ref|YP_002995203.1| - 7 6.8 11.0 2.7 8.2 2.5 2.8 2 1 1 3 3 2 0 MbeD/MobD like TMPIT PF07851.13 gi|242399778|ref|YP_002995203.1| - 8.6 5.5 35.8 1.2 8.3 9.5 2.7 1 1 1 2 2 2 0 TMPIT-like protein Atg14 PF10186.9 gi|242399778|ref|YP_002995203.1| - 9.9 5.1 42.9 21 4.0 20.8 2.5 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 ATPase PF06745.13 gi|242399779|ref|YP_002995204.1| - 1.5e-91 305.9 0.0 1.7e-91 305.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|242399779|ref|YP_002995204.1| - 1.3e-08 34.7 0.0 2.7e-08 33.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|242399779|ref|YP_002995204.1| - 5.1e-08 32.0 0.0 7.4e-08 31.4 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|242399779|ref|YP_002995204.1| - 0.0006 19.2 0.5 0.0048 16.2 0.1 2.1 2 0 0 2 2 2 1 Rad51 T2SSE PF00437.20 gi|242399779|ref|YP_002995204.1| - 0.0074 15.4 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.6 gi|242399779|ref|YP_002995204.1| - 0.019 15.3 0.5 0.042 14.2 0.3 1.8 1 1 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|242399779|ref|YP_002995204.1| - 0.04 13.3 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|242399779|ref|YP_002995204.1| - 0.061 13.0 0.4 0.37 10.5 0.6 2.1 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|242399779|ref|YP_002995204.1| - 0.075 13.4 0.1 0.17 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|242399779|ref|YP_002995204.1| - 0.16 11.5 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region PPV_E1_C PF00519.17 gi|242399779|ref|YP_002995204.1| - 0.22 10.3 0.0 0.37 9.6 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase UPF0113 PF03657.13 gi|242399780|ref|YP_002995205.1| - 1.5e-16 60.4 0.1 2.2e-16 59.9 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain UPF0113_N PF17833.1 gi|242399780|ref|YP_002995205.1| - 1.1e-05 25.9 0.1 2e-05 25.1 0.1 1.5 1 0 0 1 1 1 1 UPF0113 Pre-PUA domain CxxCxxCC PF03692.15 gi|242399781|ref|YP_002995206.1| - 1.1e-14 54.9 0.2 1.6e-14 54.4 0.2 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SapC PF07277.11 gi|242399781|ref|YP_002995206.1| - 0.033 13.8 0.0 0.043 13.4 0.0 1.2 1 0 0 1 1 1 0 SapC Radical_SAM PF04055.21 gi|242399782|ref|YP_002995207.1| - 1.6e-30 106.7 2.0 4.2e-29 102.1 0.1 3.4 3 1 0 3 3 3 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|242399782|ref|YP_002995207.1| - 2.9e-28 97.7 0.6 8.1e-28 96.3 0.6 1.8 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|242399782|ref|YP_002995207.1| - 2.1e-08 34.4 0.7 5.4e-08 33.1 0.3 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|242399782|ref|YP_002995207.1| - 0.00016 21.6 0.1 0.00059 19.8 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|242399782|ref|YP_002995207.1| - 0.0093 16.4 0.1 0.019 15.4 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain NIF3 PF01784.18 gi|242399783|ref|YP_002995208.1| - 4.6e-58 196.7 0.0 5.7e-58 196.4 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) CRM1_repeat_2 PF18784.1 gi|242399784|ref|YP_002995209.1| - 0.086 12.5 0.0 1.7 8.3 0.0 2.6 2 0 0 2 2 2 0 CRM1 / Exportin repeat 2 MTES_1575 PF18741.1 gi|242399786|ref|YP_002995211.1| - 0.0071 16.5 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 REase_MTES_1575 MmcB-like PF06319.12 gi|242399786|ref|YP_002995211.1| - 0.0074 16.0 0.0 0.0091 15.7 0.0 1.2 1 0 0 1 1 1 1 DNA repair protein MmcB-like LAP1C PF05609.12 gi|242399786|ref|YP_002995211.1| - 0.029 13.5 0.2 0.054 12.6 0.1 1.4 2 0 0 2 2 2 0 Lamina-associated polypeptide 1C (LAP1C) tRNA-synt_2c PF01411.19 gi|242399787|ref|YP_002995212.1| - 4.2e-144 481.1 0.0 6.4e-144 480.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|242399787|ref|YP_002995212.1| - 1.8e-19 70.6 9.1 1.8e-19 70.6 9.1 1.9 2 0 0 2 2 2 1 DHHA1 domain tRNA_SAD PF07973.14 gi|242399787|ref|YP_002995212.1| - 5.4e-15 55.2 0.3 1.7e-14 53.6 0.3 1.9 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DUF4373 PF14297.6 gi|242399787|ref|YP_002995212.1| - 0.07 13.9 0.0 0.38 11.6 0.0 2.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4373) Peptidase_C39_2 PF13529.6 gi|242399789|ref|YP_002995214.1| - 5.3e-09 36.8 0.1 1e-08 35.8 0.1 1.5 1 0 0 1 1 1 1 Peptidase_C39 like family Inhibitor_I69 PF13734.6 gi|242399789|ref|YP_002995214.1| - 0.00061 20.2 0.0 0.0014 19.0 0.0 1.7 1 0 0 1 1 1 1 Spi protease inhibitor HTH_ABP1_N PF18107.1 gi|242399789|ref|YP_002995214.1| - 0.032 13.9 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 Fission yeast centromere protein N-terminal domain DUF2721 PF11026.8 gi|242399790|ref|YP_002995215.1| - 0.077 12.9 0.5 0.077 12.9 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) DUF4131 PF13567.6 gi|242399790|ref|YP_002995215.1| - 4.2 7.0 7.2 11 5.7 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) CN_hydrolase PF00795.22 gi|242399791|ref|YP_002995216.1| - 1.7e-55 188.2 0.0 2e-55 188.0 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF2122 PF09895.9 gi|242399791|ref|YP_002995216.1| - 0.1 13.0 0.1 0.22 11.9 0.1 1.5 1 0 0 1 1 1 0 RecB-family nuclease (DUF2122) Ribosomal_L41 PF05162.13 gi|242399792|ref|YP_002995217.1| - 0.005 16.9 17.1 0.005 16.9 17.1 2.7 1 1 1 2 2 2 1 Ribosomal protein L41 Metallophos PF00149.28 gi|242399793|ref|YP_002995218.1| - 6.4e-10 39.9 0.1 9.1e-10 39.4 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|242399793|ref|YP_002995218.1| - 0.0013 18.9 0.0 0.002 18.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TrmB PF01978.19 gi|242399794|ref|YP_002995219.1| - 6.2e-11 42.0 1.4 7.2e-11 41.8 0.5 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.11 gi|242399794|ref|YP_002995219.1| - 9.5e-06 25.6 0.7 9.5e-06 25.6 0.7 1.9 3 0 0 3 3 3 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_11 PF08279.12 gi|242399794|ref|YP_002995219.1| - 2e-05 24.4 0.5 2e-05 24.4 0.5 1.7 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|242399794|ref|YP_002995219.1| - 8.2e-05 22.1 1.3 0.00013 21.4 0.3 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding FaeA PF04703.12 gi|242399794|ref|YP_002995219.1| - 0.0029 18.0 0.5 0.0053 17.1 0.1 1.7 2 0 0 2 2 2 1 FaeA-like protein PaaX PF07848.12 gi|242399794|ref|YP_002995219.1| - 0.0077 16.4 0.0 0.035 14.3 0.0 1.9 2 0 0 2 2 2 1 PaaX-like protein HTH_IclR PF09339.10 gi|242399794|ref|YP_002995219.1| - 0.0081 15.9 0.2 0.014 15.2 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|242399794|ref|YP_002995219.1| - 0.0083 16.2 0.1 0.018 15.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|242399794|ref|YP_002995219.1| - 0.0089 15.9 4.1 0.057 13.3 1.7 2.1 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_DeoR PF08220.12 gi|242399794|ref|YP_002995219.1| - 0.0096 15.6 0.3 0.021 14.6 0.3 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|242399794|ref|YP_002995219.1| - 0.0097 15.7 0.1 0.016 15.0 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 gi|242399794|ref|YP_002995219.1| - 0.01 15.3 0.9 0.018 14.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_40 PF14493.6 gi|242399794|ref|YP_002995219.1| - 0.029 14.8 0.4 0.047 14.2 0.4 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|242399794|ref|YP_002995219.1| - 0.041 13.5 0.5 0.097 12.3 0.5 1.8 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family RPA_C PF08784.11 gi|242399794|ref|YP_002995219.1| - 0.042 14.5 0.0 0.083 13.6 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_5 PF01022.20 gi|242399794|ref|YP_002995219.1| - 0.048 13.5 1.6 0.061 13.2 0.3 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|242399794|ref|YP_002995219.1| - 0.075 12.8 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_36 PF13730.6 gi|242399794|ref|YP_002995219.1| - 1.2 9.2 7.3 4.3 7.4 0.6 3.4 3 1 0 3 3 3 0 Helix-turn-helix domain Peptidase_M28 PF04389.17 gi|242399795|ref|YP_002995220.1| - 8.7e-19 68.0 0.0 1.7e-18 67.1 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M28 DUF4910 PF16254.5 gi|242399795|ref|YP_002995220.1| - 2.7e-10 39.6 0.0 5e-09 35.4 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4910) PA PF02225.22 gi|242399795|ref|YP_002995220.1| - 0.0018 18.3 0.0 0.0043 17.1 0.0 1.6 1 0 0 1 1 1 1 PA domain ATPase PF06745.13 gi|242399797|ref|YP_002995222.1| - 5.5e-50 169.9 2.4 6.2e-50 169.7 2.4 1.0 1 0 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|242399797|ref|YP_002995222.1| - 1.1e-06 28.1 0.0 1.3e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|242399797|ref|YP_002995222.1| - 3.6e-06 26.7 0.0 2.5e-05 23.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|242399797|ref|YP_002995222.1| - 4.3e-06 26.4 0.1 8.3e-06 25.5 0.1 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.11 gi|242399797|ref|YP_002995222.1| - 5.4e-06 25.3 1.5 2e-05 23.4 1.5 1.7 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_22 PF13401.6 gi|242399797|ref|YP_002995222.1| - 0.00024 21.4 0.0 0.00046 20.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|242399797|ref|YP_002995222.1| - 0.00049 20.1 0.1 0.0012 18.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|242399797|ref|YP_002995222.1| - 0.00059 19.2 0.0 0.00085 18.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 gi|242399797|ref|YP_002995222.1| - 0.00094 19.2 0.3 0.0014 18.6 0.2 1.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|242399797|ref|YP_002995222.1| - 0.00098 19.7 0.1 0.0023 18.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|242399797|ref|YP_002995222.1| - 0.001 18.8 0.1 0.0027 17.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|242399797|ref|YP_002995222.1| - 0.0018 17.6 0.3 0.0034 16.7 0.3 1.8 1 1 0 1 1 1 1 Rad51 IstB_IS21 PF01695.17 gi|242399797|ref|YP_002995222.1| - 0.0069 16.1 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein cobW PF02492.19 gi|242399797|ref|YP_002995222.1| - 0.0088 15.6 0.4 0.011 15.3 0.4 1.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain PAXNEB PF05625.11 gi|242399797|ref|YP_002995222.1| - 0.013 14.7 3.5 0.033 13.3 0.3 2.3 2 1 1 3 3 3 0 PAXNEB protein NACHT PF05729.12 gi|242399797|ref|YP_002995222.1| - 0.019 14.9 0.2 0.071 13.0 0.2 1.9 1 1 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|242399797|ref|YP_002995222.1| - 0.067 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|242399797|ref|YP_002995222.1| - 0.075 13.4 0.4 0.17 12.2 0.4 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|242399797|ref|YP_002995222.1| - 0.079 13.3 0.2 0.12 12.7 0.2 1.3 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|242399797|ref|YP_002995222.1| - 0.086 13.4 0.3 0.19 12.3 0.2 1.6 1 1 0 1 1 1 0 ABC transporter DUF4760 PF15956.5 gi|242399797|ref|YP_002995222.1| - 0.087 13.0 0.3 0.17 12.0 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4760) DUF3738 PF12543.8 gi|242399797|ref|YP_002995222.1| - 0.09 12.9 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3738) AAA_33 PF13671.6 gi|242399797|ref|YP_002995222.1| - 0.094 12.9 0.1 0.13 12.5 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|242399797|ref|YP_002995222.1| - 0.11 12.3 0.1 0.22 11.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|242399797|ref|YP_002995222.1| - 0.11 12.4 1.5 0.14 12.1 0.1 1.8 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|242399797|ref|YP_002995222.1| - 0.25 11.6 0.3 0.54 10.5 0.3 1.5 1 0 0 1 1 1 0 AAA domain Glycos_transf_2 PF00535.26 gi|242399798|ref|YP_002995223.1| - 4.6e-37 127.4 0.2 7e-37 126.8 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|242399798|ref|YP_002995223.1| - 4e-24 85.1 9.5 5.9e-24 84.6 9.5 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|242399798|ref|YP_002995223.1| - 1.4e-12 48.0 0.0 1.8e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|242399798|ref|YP_002995223.1| - 1.2e-06 28.2 0.0 1.8e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|242399798|ref|YP_002995223.1| - 0.016 14.7 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 CofC PF01983.16 gi|242399798|ref|YP_002995223.1| - 0.064 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Guanylyl transferase CofC like RNA_Me_trans PF04252.13 gi|242399799|ref|YP_002995224.1| - 7.9e-46 156.2 0.0 1e-45 155.8 0.0 1.1 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase NTP_transf_5 PF14907.6 gi|242399801|ref|YP_002995226.1| - 0.0032 17.1 0.0 0.0034 17.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Fe-S_biosyn PF01521.20 gi|242399801|ref|YP_002995226.1| - 0.048 13.9 0.0 0.063 13.5 0.0 1.2 1 0 0 1 1 1 0 Iron-sulphur cluster biosynthesis AAA_14 PF13173.6 gi|242399803|ref|YP_002995228.1| - 1.5e-23 83.3 0.0 2.4e-23 82.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|242399803|ref|YP_002995228.1| - 0.0029 17.6 0.0 0.0083 16.1 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|242399803|ref|YP_002995228.1| - 0.099 13.1 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2103 PF09876.9 gi|242399805|ref|YP_002995230.1| - 5.8e-19 67.9 0.6 6.6e-19 67.7 0.6 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) DUF5591 PF17884.1 gi|242399806|ref|YP_002995231.1| - 1.1e-50 171.5 0.9 2.8e-50 170.2 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|242399806|ref|YP_002995231.1| - 1.3e-09 37.9 1.6 2.9e-09 36.7 1.6 1.5 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|242399806|ref|YP_002995231.1| - 5.5e-07 29.6 0.0 1e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase MscS_porin PF12795.7 gi|242399807|ref|YP_002995232.1| - 2e-05 24.3 43.8 0.0018 17.9 29.2 2.8 1 1 2 3 3 3 2 Mechanosensitive ion channel porin domain DUF1664 PF07889.12 gi|242399807|ref|YP_002995232.1| - 2.9e-05 24.1 33.3 0.077 13.0 5.2 3.9 2 1 2 4 4 4 3 Protein of unknown function (DUF1664) WXG100 PF06013.12 gi|242399807|ref|YP_002995232.1| - 0.00087 19.5 14.5 2.6 8.4 0.2 4.9 3 1 0 3 3 3 2 Proteins of 100 residues with WXG AAA_13 PF13166.6 gi|242399807|ref|YP_002995232.1| - 0.0034 16.1 46.4 0.064 11.9 28.1 2.1 1 1 1 2 2 2 2 AAA domain Prefoldin_2 PF01920.20 gi|242399807|ref|YP_002995232.1| - 0.014 15.3 5.8 0.014 15.3 5.8 6.7 2 1 3 6 6 6 0 Prefoldin subunit DUF5082 PF16888.5 gi|242399807|ref|YP_002995232.1| - 0.015 15.5 38.8 0.017 15.4 9.0 3.9 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) DUF4140 PF13600.6 gi|242399807|ref|YP_002995232.1| - 0.02 15.3 1.5 0.02 15.3 1.5 5.4 2 1 3 5 5 5 0 N-terminal domain of unknown function (DUF4140) Syntaxin-6_N PF09177.11 gi|242399807|ref|YP_002995232.1| - 0.026 15.1 3.9 0.026 15.1 3.9 4.3 1 1 3 4 4 4 0 Syntaxin 6, N-terminal EzrA PF06160.12 gi|242399807|ref|YP_002995232.1| - 0.046 11.9 52.2 0.16 10.1 52.2 1.7 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA Seryl_tRNA_N PF02403.22 gi|242399807|ref|YP_002995232.1| - 0.053 13.8 52.6 0.037 14.2 13.7 4.2 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Sterile PF03015.19 gi|242399807|ref|YP_002995232.1| - 0.055 13.7 0.5 0.19 12.0 0.5 2.1 1 0 0 1 1 1 0 Male sterility protein Snapin_Pallidin PF14712.6 gi|242399807|ref|YP_002995232.1| - 0.083 13.3 44.5 0.054 13.9 10.3 4.4 1 1 2 4 4 4 0 Snapin/Pallidin Laminin_II PF06009.12 gi|242399807|ref|YP_002995232.1| - 0.12 12.4 33.3 1.1 9.2 10.6 3.9 1 1 3 4 4 4 0 Laminin Domain II FapA PF03961.13 gi|242399807|ref|YP_002995232.1| - 0.14 10.8 49.7 0.054 12.1 20.0 3.1 1 1 3 4 4 4 0 Flagellar Assembly Protein A Atg14 PF10186.9 gi|242399807|ref|YP_002995232.1| - 0.14 11.2 54.9 0.14 11.2 20.1 3.4 1 1 3 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 CENP-F_leu_zip PF10473.9 gi|242399807|ref|YP_002995232.1| - 0.22 11.5 59.8 6.2 6.8 21.4 4.2 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_I PF06008.14 gi|242399807|ref|YP_002995232.1| - 0.27 10.9 41.1 0.15 11.7 16.4 2.6 1 1 0 2 2 2 0 Laminin Domain I DUF4201 PF13870.6 gi|242399807|ref|YP_002995232.1| - 0.34 10.6 59.0 0.52 10.0 20.5 3.7 1 1 3 4 4 4 0 Domain of unknown function (DUF4201) ATG16 PF08614.11 gi|242399807|ref|YP_002995232.1| - 0.49 10.6 45.6 0.24 11.6 12.0 2.6 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) Fib_alpha PF08702.10 gi|242399807|ref|YP_002995232.1| - 0.67 10.1 40.1 1.7 8.8 12.3 3.3 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family TMPIT PF07851.13 gi|242399807|ref|YP_002995232.1| - 0.98 8.6 46.3 0.039 13.2 15.3 3.1 1 1 1 3 3 3 0 TMPIT-like protein DUF948 PF06103.11 gi|242399807|ref|YP_002995232.1| - 1 9.7 16.4 4.5 7.6 1.5 4.2 1 1 4 5 5 5 0 Bacterial protein of unknown function (DUF948) Fez1 PF06818.15 gi|242399807|ref|YP_002995232.1| - 2 8.8 52.5 1.6 9.1 8.2 2.9 1 1 1 2 2 1 0 Fez1 Sec34 PF04136.15 gi|242399807|ref|YP_002995232.1| - 2.8 7.8 28.1 1 9.3 1.2 3.9 1 1 3 4 4 4 0 Sec34-like family CENP-H PF05837.12 gi|242399807|ref|YP_002995232.1| - 2.9 8.3 51.5 0.045 14.2 4.8 4.1 1 1 2 4 4 4 0 Centromere protein H (CENP-H) DUF2968 PF11180.8 gi|242399807|ref|YP_002995232.1| - 3.1 7.4 45.3 0.03 14.0 13.2 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2968) YabA PF06156.13 gi|242399807|ref|YP_002995232.1| - 4.3 8.0 43.4 2.5 8.8 7.1 4.2 1 1 3 4 4 4 0 Initiation control protein YabA TPR_MLP1_2 PF07926.12 gi|242399807|ref|YP_002995232.1| - 4.4 7.4 54.1 5 7.2 5.4 4.1 1 1 3 4 4 4 0 TPR/MLP1/MLP2-like protein Occludin_ELL PF07303.13 gi|242399807|ref|YP_002995232.1| - 4.4 8.1 47.8 3.8 8.3 6.4 4.2 1 1 3 4 4 4 0 Occludin homology domain DUF724 PF05266.14 gi|242399807|ref|YP_002995232.1| - 4.7 7.0 54.1 0.69 9.7 23.4 3.1 1 1 3 4 4 4 0 Protein of unknown function (DUF724) MCPsignal PF00015.21 gi|242399807|ref|YP_002995232.1| - 4.8 7.0 16.4 3.2 7.5 1.1 3.2 2 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain LPP PF04728.13 gi|242399807|ref|YP_002995232.1| - 5.1 7.6 15.9 4.9 7.6 0.4 4.9 3 1 2 5 5 5 0 Lipoprotein leucine-zipper T3SSipB PF16535.5 gi|242399807|ref|YP_002995232.1| - 5.2 7.5 25.3 2.1 8.8 8.9 2.9 1 1 0 2 2 2 0 Type III cell invasion protein SipB Mod_r PF07200.13 gi|242399807|ref|YP_002995232.1| - 5.4 7.1 47.9 0.41 10.7 15.2 3.9 1 1 0 2 2 1 0 Modifier of rudimentary (Mod(r)) protein NPV_P10 PF05531.12 gi|242399807|ref|YP_002995232.1| - 5.7 7.5 18.5 6.8 7.2 0.6 4.6 2 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein FH2 PF02181.23 gi|242399807|ref|YP_002995232.1| - 9.7 5.2 35.8 0.81 8.7 10.0 2.9 2 1 1 3 3 3 0 Formin Homology 2 Domain Glu_syn_central PF04898.14 gi|242399807|ref|YP_002995232.1| - 9.7 5.6 10.3 0.42 10.0 1.4 2.2 2 0 0 2 2 2 0 Glutamate synthase central domain SDH_sah PF01972.16 gi|242399808|ref|YP_002995233.1| - 3.3e-142 472.6 3.3 3.6e-142 472.5 3.3 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|242399808|ref|YP_002995233.1| - 7.4e-07 29.2 0.2 2.6e-06 27.5 0.1 1.8 1 1 1 2 2 2 1 Clp protease Peptidase_S49 PF01343.18 gi|242399808|ref|YP_002995233.1| - 0.003 17.5 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase family S49 ECH_1 PF00378.20 gi|242399808|ref|YP_002995233.1| - 0.0067 15.8 0.1 0.02 14.2 0.0 1.8 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase Calmodulin_bind PF07887.11 gi|242399808|ref|YP_002995233.1| - 0.0094 15.3 0.1 0.013 14.8 0.1 1.2 1 0 0 1 1 1 1 Calmodulin binding protein-like AA_kinase PF00696.28 gi|242399809|ref|YP_002995234.1| - 1.3e-28 100.2 0.1 1.6e-28 99.9 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family SKI PF01202.22 gi|242399809|ref|YP_002995234.1| - 0.19 11.9 0.5 6.1 6.9 0.0 2.7 2 1 0 2 2 2 0 Shikimate kinase NAD_binding_8 PF13450.6 gi|242399810|ref|YP_002995235.1| - 2e-11 43.9 0.1 3.8e-11 43.1 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|242399810|ref|YP_002995235.1| - 9.1e-10 38.4 0.0 3.2e-09 36.6 0.0 1.9 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox_2 PF07992.14 gi|242399810|ref|YP_002995235.1| - 2.2e-09 37.0 1.4 0.00015 21.1 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|242399810|ref|YP_002995235.1| - 0.0002 21.1 0.1 0.00043 20.0 0.1 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|242399810|ref|YP_002995235.1| - 0.0011 18.1 0.1 0.002 17.3 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|242399810|ref|YP_002995235.1| - 0.0025 17.1 0.0 0.0046 16.3 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|242399810|ref|YP_002995235.1| - 0.0029 18.1 0.6 0.42 11.2 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase MCRA PF06100.11 gi|242399810|ref|YP_002995235.1| - 0.032 13.0 0.0 0.044 12.6 0.0 1.1 1 0 0 1 1 1 0 MCRA family FAD_oxidored PF12831.7 gi|242399810|ref|YP_002995235.1| - 0.038 13.3 0.2 0.058 12.7 0.2 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|242399810|ref|YP_002995235.1| - 0.05 12.3 0.1 0.082 11.6 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein CTP_transf_like PF01467.26 gi|242399811|ref|YP_002995236.1| - 2.9e-15 56.7 0.0 3.5e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|242399811|ref|YP_002995236.1| - 0.00034 20.5 0.1 0.00056 19.8 0.1 1.3 1 0 0 1 1 1 1 FAD synthetase Succ_CoA_lig PF13607.6 gi|242399812|ref|YP_002995237.1| - 2.9e-55 185.9 0.3 2e-53 179.9 0.3 2.4 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|242399812|ref|YP_002995237.1| - 6.9e-17 62.0 0.2 2.4e-16 60.3 0.1 1.9 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|242399812|ref|YP_002995237.1| - 6.3e-06 26.8 5.2 9.6e-06 26.2 1.0 3.1 4 0 0 4 4 4 1 CoA binding domain F420_oxidored PF03807.17 gi|242399812|ref|YP_002995237.1| - 0.032 14.8 0.9 0.18 12.4 0.2 2.4 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Flavin_Reduct PF01613.18 gi|242399813|ref|YP_002995238.1| - 5.2e-23 81.8 0.0 6.2e-23 81.6 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Peptidase_M22 PF00814.25 gi|242399814|ref|YP_002995239.1| - 1.6e-97 326.5 0.1 1.8e-97 326.3 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|242399814|ref|YP_002995239.1| - 0.00053 19.8 0.0 0.099 12.3 0.0 2.2 2 0 0 2 2 2 2 Carbamoyltransferase N-terminus BcrAD_BadFG PF01869.20 gi|242399814|ref|YP_002995239.1| - 0.028 13.9 0.0 0.34 10.3 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family NAD_kinase PF01513.21 gi|242399815|ref|YP_002995240.1| - 1.7e-67 227.7 0.2 3e-67 226.9 0.2 1.4 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|242399815|ref|YP_002995240.1| - 0.0019 17.8 0.0 0.0029 17.2 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Staph_opine_DH PF10100.9 gi|242399815|ref|YP_002995240.1| - 0.079 11.6 0.1 0.12 11.0 0.1 1.1 1 0 0 1 1 1 0 Staphylopine dehydrogenase LPG_synthase_TM PF03706.13 gi|242399816|ref|YP_002995241.1| - 1.6e-53 182.2 25.8 2e-53 181.9 25.8 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region RabGAP-TBC PF00566.18 gi|242399816|ref|YP_002995241.1| - 0.038 13.7 1.4 0.065 12.9 1.4 1.3 1 0 0 1 1 1 0 Rab-GTPase-TBC domain Methyltr_RsmB-F PF01189.17 gi|242399817|ref|YP_002995242.1| - 8.9e-58 195.2 0.0 1.2e-57 194.8 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|242399817|ref|YP_002995242.1| - 1.8e-17 63.0 0.5 3.3e-17 62.2 0.5 1.4 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.6 gi|242399817|ref|YP_002995242.1| - 1.4e-10 41.1 0.0 2.1e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|242399817|ref|YP_002995242.1| - 7.6e-07 29.5 0.0 7.6e-05 23.1 0.0 2.4 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Ubie_methyltran PF01209.18 gi|242399817|ref|YP_002995242.1| - 4.5e-05 22.9 0.0 7.8e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|242399817|ref|YP_002995242.1| - 9.4e-05 23.1 0.0 0.00021 21.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.19 gi|242399817|ref|YP_002995242.1| - 0.0012 18.4 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 MraW methylase family Methyltransf_4 PF02390.17 gi|242399817|ref|YP_002995242.1| - 0.0042 16.6 0.1 0.6 9.6 0.0 2.2 2 0 0 2 2 2 1 Putative methyltransferase FtsJ PF01728.19 gi|242399817|ref|YP_002995242.1| - 0.0099 16.0 0.0 0.021 14.9 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.19 gi|242399817|ref|YP_002995242.1| - 0.014 15.2 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0113 PF03657.13 gi|242399817|ref|YP_002995242.1| - 0.057 13.7 0.1 0.13 12.5 0.1 1.6 1 0 0 1 1 1 0 UPF0113 PUA domain DUF3201 PF11447.8 gi|242399818|ref|YP_002995243.1| - 8e-58 194.2 6.5 9.4e-58 194.0 6.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3201) Tsp45I PF06300.12 gi|242399818|ref|YP_002995243.1| - 0.031 13.8 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 Tsp45I type II restriction enzyme Costars PF14705.6 gi|242399818|ref|YP_002995243.1| - 0.1 12.8 0.1 0.6 10.3 0.0 2.2 2 0 0 2 2 2 0 Costars LEA_2 PF03168.13 gi|242399819|ref|YP_002995244.1| - 2.6e-11 44.0 0.0 5.4e-10 39.7 0.0 2.2 2 0 0 2 2 2 1 Late embryogenesis abundant protein MMPL PF03176.15 gi|242399820|ref|YP_002995245.1| - 8.3e-59 199.2 1.0 4.6e-33 114.6 1.1 2.3 2 0 0 2 2 2 2 MMPL family Patched PF02460.18 gi|242399820|ref|YP_002995245.1| - 2e-14 52.7 27.8 6.2e-09 34.5 4.6 3.4 4 0 0 4 4 4 3 Patched family SecD_SecF PF02355.16 gi|242399820|ref|YP_002995245.1| - 4.6e-14 52.2 16.4 5.3e-09 35.7 8.3 2.8 2 0 0 2 2 2 2 Protein export membrane protein Sterol-sensing PF12349.8 gi|242399820|ref|YP_002995245.1| - 8.1e-09 35.5 6.9 0.00086 19.2 0.2 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation CorC_HlyC PF03471.17 gi|242399820|ref|YP_002995245.1| - 0.00023 21.1 0.1 0.37 10.8 0.0 3.1 2 0 0 2 2 2 2 Transporter associated domain ACR_tran PF00873.19 gi|242399820|ref|YP_002995245.1| - 0.00057 17.7 24.5 0.0015 16.3 12.0 2.8 2 2 0 2 2 2 2 AcrB/AcrD/AcrF family CstA_5TM PF13722.6 gi|242399820|ref|YP_002995245.1| - 0.43 11.0 5.0 1.6 9.1 0.3 3.5 3 0 0 3 3 3 0 5TM C-terminal transporter carbon starvation CstA Tautomerase PF01361.21 gi|242399823|ref|YP_002995248.1| - 7e-10 38.7 0.0 9.3e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|242399823|ref|YP_002995248.1| - 0.033 14.3 0.0 0.038 14.1 0.0 1.1 1 0 0 1 1 1 0 Tautomerase enzyme DUF1126 PF06565.12 gi|242399823|ref|YP_002995248.1| - 0.13 12.1 0.0 0.21 11.4 0.0 1.3 1 1 0 1 1 1 0 DUF1126 PH-like domain B12-binding PF02310.19 gi|242399824|ref|YP_002995249.1| - 2.7e-25 88.8 0.2 2e-24 85.9 0.2 2.4 3 0 0 3 3 3 1 B12 binding domain Radical_SAM PF04055.21 gi|242399824|ref|YP_002995249.1| - 4.5e-19 69.4 0.2 9.7e-18 65.1 0.0 2.6 2 1 0 2 2 2 1 Radical SAM superfamily CRISPR_Cas2 PF09827.9 gi|242399824|ref|YP_002995249.1| - 0.046 13.9 0.0 0.25 11.6 0.0 2.3 2 0 0 2 2 2 0 CRISPR associated protein Cas2 PFK PF00365.20 gi|242399824|ref|YP_002995249.1| - 0.063 12.6 0.3 6.3 6.0 0.1 2.4 2 1 0 2 2 2 0 Phosphofructokinase Ribosomal_S11 PF00411.19 gi|242399824|ref|YP_002995249.1| - 0.12 12.8 0.0 0.71 10.3 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S11 DUF768 PF05589.11 gi|242399824|ref|YP_002995249.1| - 0.19 11.7 2.3 0.3 11.1 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF768) MarR PF01047.22 gi|242399825|ref|YP_002995250.1| - 2.3e-08 33.8 0.0 4.8e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|242399825|ref|YP_002995250.1| - 4.1e-06 26.6 0.0 8.1e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|242399825|ref|YP_002995250.1| - 6.2e-06 26.0 0.1 1.1e-05 25.2 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|242399825|ref|YP_002995250.1| - 7.6e-06 25.4 0.7 0.00015 21.3 0.0 2.9 4 0 0 4 4 4 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|242399825|ref|YP_002995250.1| - 1e-05 25.9 0.0 2.7e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|242399825|ref|YP_002995250.1| - 1.5e-05 24.6 0.0 0.00027 20.6 0.0 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|242399825|ref|YP_002995250.1| - 0.00027 20.9 0.0 0.00086 19.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|242399825|ref|YP_002995250.1| - 0.00029 20.7 0.1 0.0014 18.5 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family RepL PF05732.11 gi|242399825|ref|YP_002995250.1| - 0.0017 17.8 0.5 0.011 15.2 0.0 2.0 2 0 0 2 2 2 1 Firmicute plasmid replication protein (RepL) GntR PF00392.21 gi|242399825|ref|YP_002995250.1| - 0.0032 17.1 0.0 0.015 14.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Sigma70_r4 PF04545.16 gi|242399825|ref|YP_002995250.1| - 0.0056 16.2 0.1 0.062 12.8 0.0 2.6 3 0 0 3 3 3 1 Sigma-70, region 4 DUF4423 PF14394.6 gi|242399825|ref|YP_002995250.1| - 0.007 16.1 0.8 0.19 11.4 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) HTH_36 PF13730.6 gi|242399825|ref|YP_002995250.1| - 0.0094 15.9 0.0 0.028 14.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|242399825|ref|YP_002995250.1| - 0.012 16.0 0.0 0.026 14.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.6 gi|242399825|ref|YP_002995250.1| - 0.013 15.6 0.3 0.84 9.8 0.0 3.0 4 0 0 4 4 4 0 Helix-turn-helix domain DprA_WH PF17782.1 gi|242399825|ref|YP_002995250.1| - 0.016 15.3 0.0 0.03 14.5 0.0 1.5 1 0 0 1 1 1 0 DprA winged helix domain HTH_29 PF13551.6 gi|242399825|ref|YP_002995250.1| - 0.017 15.2 0.0 0.035 14.1 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.12 gi|242399825|ref|YP_002995250.1| - 0.017 15.1 0.2 0.066 13.2 0.0 2.2 2 1 1 3 3 3 0 HTH domain HTH_Crp_2 PF13545.6 gi|242399825|ref|YP_002995250.1| - 0.019 14.9 0.0 0.049 13.6 0.0 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|242399825|ref|YP_002995250.1| - 0.02 15.0 1.3 0.058 13.5 0.4 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_AraC PF00165.23 gi|242399825|ref|YP_002995250.1| - 0.02 15.0 0.0 0.088 12.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family Penicillinase_R PF03965.16 gi|242399825|ref|YP_002995250.1| - 0.035 14.5 0.1 0.063 13.6 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor DUF5343 PF17278.2 gi|242399825|ref|YP_002995250.1| - 0.046 13.8 0.5 0.069 13.2 0.5 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5343) DNA_primase_lrg PF04104.14 gi|242399825|ref|YP_002995250.1| - 0.088 12.2 1.1 0.11 11.9 1.1 1.2 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit PNPase PF03726.14 gi|242399825|ref|YP_002995250.1| - 1.6 9.3 7.8 5.3 7.6 1.3 2.5 1 1 1 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain CarS-like PF01864.17 gi|242399826|ref|YP_002995251.1| - 3e-56 190.1 1.3 3.3e-56 190.0 1.3 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|242399826|ref|YP_002995251.1| - 2e-10 40.9 1.8 2e-10 40.9 1.8 1.9 2 0 0 2 2 2 1 Cytidylyltransferase family DUF4203 PF13886.6 gi|242399826|ref|YP_002995251.1| - 0.032 13.9 5.4 0.045 13.4 5.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) ThiS PF02597.20 gi|242399827|ref|YP_002995252.1| - 3.7e-17 62.7 0.0 4.2e-17 62.5 0.0 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|242399827|ref|YP_002995252.1| - 0.094 12.6 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Mut7-C ubiquitin ThiF PF00899.21 gi|242399828|ref|YP_002995253.1| - 1.3e-57 195.0 0.0 1.5e-57 194.8 0.0 1.0 1 0 0 1 1 1 1 ThiF family Ldh_1_N PF00056.23 gi|242399828|ref|YP_002995253.1| - 0.0016 18.5 0.6 0.021 14.9 0.0 2.6 3 0 0 3 3 3 1 lactate/malate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|242399828|ref|YP_002995253.1| - 0.0033 16.8 0.7 0.038 13.3 0.0 2.4 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|242399828|ref|YP_002995253.1| - 0.0033 17.0 0.0 0.0058 16.2 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|242399828|ref|YP_002995253.1| - 0.0035 17.6 0.1 0.012 15.9 0.1 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|242399828|ref|YP_002995253.1| - 0.012 15.6 0.1 0.22 11.6 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|242399828|ref|YP_002995253.1| - 0.014 15.3 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|242399828|ref|YP_002995253.1| - 0.015 14.9 0.1 0.029 14.0 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|242399828|ref|YP_002995253.1| - 0.16 11.5 0.0 0.4 10.2 0.0 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase MoaE PF02391.17 gi|242399829|ref|YP_002995254.1| - 5.2e-36 123.3 0.0 6.6e-36 123.0 0.0 1.1 1 0 0 1 1 1 1 MoaE protein SPASM PF13186.6 gi|242399830|ref|YP_002995255.1| - 6e-07 29.9 0.1 1.7e-06 28.4 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Adenosine_kin PF04008.14 gi|242399831|ref|YP_002995256.1| - 8.7e-62 207.5 1.5 9.9e-62 207.3 1.5 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Ham1p_like PF01725.16 gi|242399832|ref|YP_002995257.1| - 8.4e-51 172.6 0.0 9.4e-51 172.4 0.0 1.0 1 0 0 1 1 1 1 Ham1 family HTH_24 PF13412.6 gi|242399833|ref|YP_002995258.1| - 5.1e-16 58.0 1.2 3.2e-13 49.0 0.5 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|242399833|ref|YP_002995258.1| - 3.4e-15 55.7 0.0 5.7e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|242399833|ref|YP_002995258.1| - 1e-10 41.3 0.0 3e-10 39.8 0.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|242399833|ref|YP_002995258.1| - 1.1e-05 25.2 0.2 2.5e-05 24.1 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|242399833|ref|YP_002995258.1| - 5.6e-05 23.0 0.1 0.00025 20.9 0.1 2.0 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|242399833|ref|YP_002995258.1| - 0.00018 21.3 0.0 0.00054 19.7 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|242399833|ref|YP_002995258.1| - 0.00022 21.1 0.0 0.003 17.4 0.0 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|242399833|ref|YP_002995258.1| - 0.00027 20.8 0.1 0.0014 18.5 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|242399833|ref|YP_002995258.1| - 0.00028 21.3 0.0 0.00066 20.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_8 PF02954.19 gi|242399833|ref|YP_002995258.1| - 0.00041 20.1 0.1 0.00066 19.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_23 PF13384.6 gi|242399833|ref|YP_002995258.1| - 0.00073 19.3 0.0 0.045 13.6 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain B-block_TFIIIC PF04182.12 gi|242399833|ref|YP_002995258.1| - 0.00095 19.3 0.3 0.0089 16.2 0.1 2.2 1 1 1 2 2 2 1 B-block binding subunit of TFIIIC HTH_5 PF01022.20 gi|242399833|ref|YP_002995258.1| - 0.004 17.0 0.1 0.0066 16.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_30 PF13556.6 gi|242399833|ref|YP_002995258.1| - 0.0047 16.7 0.0 0.0083 15.9 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain Sigma70_r4 PF04545.16 gi|242399833|ref|YP_002995258.1| - 0.0098 15.4 0.0 5.4 6.6 0.0 2.6 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|242399833|ref|YP_002995258.1| - 0.013 15.5 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.13 gi|242399833|ref|YP_002995258.1| - 0.022 15.3 0.1 0.037 14.6 0.1 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain DUF2250 PF10007.9 gi|242399833|ref|YP_002995258.1| - 0.025 14.7 0.2 0.049 13.7 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.12 gi|242399833|ref|YP_002995258.1| - 0.027 14.2 0.1 0.086 12.7 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|242399833|ref|YP_002995258.1| - 0.095 12.4 0.0 7.7 6.3 0.0 2.4 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_3 PF01381.22 gi|242399833|ref|YP_002995258.1| - 0.11 12.6 0.1 24 5.1 0.0 2.7 3 0 0 3 3 2 0 Helix-turn-helix Spore_YhcN_YlaJ PF09580.10 gi|242399833|ref|YP_002995258.1| - 0.12 12.4 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) HTH_28 PF13518.6 gi|242399833|ref|YP_002995258.1| - 0.14 12.3 0.0 0.62 10.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|242399833|ref|YP_002995258.1| - 0.14 11.9 0.5 9.4 6.1 0.0 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain FmdE PF02663.14 gi|242399834|ref|YP_002995259.1| - 3.8e-36 124.0 0.0 4.9e-36 123.7 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|242399834|ref|YP_002995259.1| - 1.7e-06 27.8 2.5 3.3e-06 26.9 2.5 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger TrmO PF01980.16 gi|242399835|ref|YP_002995260.1| - 6.4e-34 116.7 0.0 7.7e-34 116.5 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O Peripla_BP_2 PF01497.18 gi|242399836|ref|YP_002995261.1| - 1.3e-26 93.7 0.0 1.8e-26 93.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein LPAM_1 PF08139.12 gi|242399836|ref|YP_002995261.1| - 0.33 11.5 1.8 0.63 10.7 1.8 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site FecCD PF01032.18 gi|242399837|ref|YP_002995262.1| - 2.5e-97 325.6 32.0 3.1e-97 325.3 32.0 1.0 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|242399838|ref|YP_002995263.1| - 3.2e-30 105.4 0.0 4.7e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242399838|ref|YP_002995263.1| - 2.3e-10 40.8 0.1 2.9e-05 24.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|242399838|ref|YP_002995263.1| - 1e-05 26.1 0.7 2.5e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|242399838|ref|YP_002995263.1| - 6.5e-05 22.5 0.3 0.014 14.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|242399838|ref|YP_002995263.1| - 6.7e-05 22.8 0.2 0.053 13.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|242399838|ref|YP_002995263.1| - 0.00017 21.3 0.1 0.00053 19.7 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|242399838|ref|YP_002995263.1| - 0.00073 19.2 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|242399838|ref|YP_002995263.1| - 0.0063 16.4 0.2 1 9.2 0.0 2.9 2 1 1 3 3 3 1 NTPase RsgA_GTPase PF03193.16 gi|242399838|ref|YP_002995263.1| - 0.0066 16.4 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase ATPase_2 PF01637.18 gi|242399838|ref|YP_002995263.1| - 0.0084 16.0 0.0 0.016 15.1 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea ABC_ATPase PF09818.9 gi|242399838|ref|YP_002995263.1| - 0.016 14.1 0.3 2.7 6.7 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|242399838|ref|YP_002995263.1| - 0.016 15.5 0.2 0.36 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|242399838|ref|YP_002995263.1| - 0.017 14.9 0.0 0.025 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|242399838|ref|YP_002995263.1| - 0.021 15.3 0.4 0.29 11.5 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|242399838|ref|YP_002995263.1| - 0.026 14.5 0.0 2.4 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|242399838|ref|YP_002995263.1| - 0.03 14.7 0.0 0.07 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.15 gi|242399838|ref|YP_002995263.1| - 0.032 14.2 0.1 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain MMR_HSR1 PF01926.23 gi|242399838|ref|YP_002995263.1| - 0.039 14.0 0.1 0.22 11.6 0.0 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|242399838|ref|YP_002995263.1| - 0.071 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|242399838|ref|YP_002995263.1| - 0.093 13.0 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|242399838|ref|YP_002995263.1| - 0.11 13.1 0.1 3.4 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|242399838|ref|YP_002995263.1| - 0.12 11.5 0.3 0.31 10.2 0.3 1.8 1 1 0 1 1 1 0 NB-ARC domain PRK PF00485.18 gi|242399838|ref|YP_002995263.1| - 0.15 11.8 0.0 0.3 10.8 0.0 1.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family VIT1 PF01988.19 gi|242399839|ref|YP_002995264.1| - 3.8e-47 161.0 5.6 5.1e-47 160.5 5.6 1.2 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.17 gi|242399839|ref|YP_002995264.1| - 0.0011 19.4 3.0 0.0028 18.1 2.5 1.9 1 1 0 1 1 1 1 Rubrerythrin DUF1269 PF06897.12 gi|242399839|ref|YP_002995264.1| - 1.5 9.1 6.5 1 9.7 0.6 3.2 4 1 0 4 4 4 0 Protein of unknown function (DUF1269) HTH_11 PF08279.12 gi|242399840|ref|YP_002995265.1| - 0.00059 19.7 0.0 0.00072 19.5 0.0 1.1 1 0 0 1 1 1 1 HTH domain TBPIP PF07106.13 gi|242399840|ref|YP_002995265.1| - 0.00075 19.4 0.1 0.0012 18.7 0.1 1.2 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain TrmB PF01978.19 gi|242399840|ref|YP_002995265.1| - 0.00088 19.1 0.0 0.00093 19.0 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HARE-HTH PF05066.13 gi|242399840|ref|YP_002995265.1| - 0.0018 18.6 0.1 0.0023 18.3 0.1 1.3 1 1 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain Rrf2 PF02082.20 gi|242399840|ref|YP_002995265.1| - 0.0019 18.5 0.0 0.0022 18.3 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator SMC_ScpB PF04079.16 gi|242399840|ref|YP_002995265.1| - 0.007 16.0 0.0 0.0077 15.9 0.0 1.1 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB z-alpha PF02295.17 gi|242399840|ref|YP_002995265.1| - 0.0089 16.1 0.1 0.0097 15.9 0.1 1.1 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain Phage_terminase PF10668.9 gi|242399840|ref|YP_002995265.1| - 0.015 15.3 0.3 0.018 15.1 0.3 1.2 1 0 0 1 1 1 0 Phage terminase small subunit FaeA PF04703.12 gi|242399840|ref|YP_002995265.1| - 0.021 15.2 0.0 0.025 14.9 0.0 1.1 1 0 0 1 1 1 0 FaeA-like protein RNA_pol_Rpc34 PF05158.12 gi|242399840|ref|YP_002995265.1| - 0.027 13.8 0.1 0.029 13.8 0.1 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_24 PF13412.6 gi|242399840|ref|YP_002995265.1| - 0.051 13.2 0.1 0.068 12.8 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|242399840|ref|YP_002995265.1| - 0.066 13.2 0.1 0.085 12.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_beta PF02186.15 gi|242399840|ref|YP_002995265.1| - 0.095 13.0 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 TFIIE beta subunit core domain DUF2336 PF10098.9 gi|242399840|ref|YP_002995265.1| - 0.099 12.1 0.0 0.11 12.0 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2336) Phage_pRha PF09669.10 gi|242399840|ref|YP_002995265.1| - 0.11 13.1 0.0 0.13 12.9 0.0 1.2 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) GntR PF00392.21 gi|242399840|ref|YP_002995265.1| - 0.11 12.2 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|242399840|ref|YP_002995265.1| - 0.13 12.1 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|242399840|ref|YP_002995265.1| - 0.15 12.0 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|242399840|ref|YP_002995265.1| - 0.16 12.0 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|242399840|ref|YP_002995265.1| - 0.21 11.6 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Aldedh PF00171.22 gi|242399841|ref|YP_002995266.1| - 9.4e-119 396.9 0.0 1.1e-118 396.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|242399841|ref|YP_002995266.1| - 0.00067 18.8 0.0 0.0014 17.8 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) ATP-grasp PF02222.22 gi|242399842|ref|YP_002995267.1| - 1.2e-51 174.7 0.0 1.9e-51 174.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|242399842|ref|YP_002995267.1| - 1.8e-16 59.5 0.5 3.8e-16 58.5 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_3 PF02655.14 gi|242399842|ref|YP_002995267.1| - 1.6e-10 41.3 0.1 2.9e-10 40.4 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|242399842|ref|YP_002995267.1| - 1.8e-08 34.2 0.1 1.2e-07 31.5 0.1 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|242399842|ref|YP_002995267.1| - 1.1e-06 28.3 0.6 3.5e-06 26.7 0.6 1.8 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.11 gi|242399842|ref|YP_002995267.1| - 2e-05 24.3 0.3 6.5e-05 22.6 0.3 1.8 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_ST PF14397.6 gi|242399842|ref|YP_002995267.1| - 0.00069 19.0 0.0 0.083 12.1 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp XdhC_C PF13478.6 gi|242399842|ref|YP_002995267.1| - 0.11 13.1 0.0 0.3 11.6 0.0 1.8 1 0 0 1 1 1 0 XdhC Rossmann domain PRODH PF18327.1 gi|242399842|ref|YP_002995267.1| - 0.11 12.7 0.1 0.22 11.8 0.1 1.5 1 0 0 1 1 1 0 Proline utilization A proline dehydrogenase N-terminal domain Radical_SAM PF04055.21 gi|242399842|ref|YP_002995267.1| - 0.12 12.8 0.1 4.3 7.7 0.0 2.5 2 0 0 2 2 2 0 Radical SAM superfamily ATPgrasp_YheCD PF14398.6 gi|242399842|ref|YP_002995267.1| - 0.12 11.6 0.0 0.27 10.4 0.0 1.5 1 0 0 1 1 1 0 YheC/D like ATP-grasp Pyr_redox PF00070.27 gi|242399842|ref|YP_002995267.1| - 0.42 11.2 2.5 5.3 7.7 0.1 3.4 4 0 0 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase AIRC PF00731.20 gi|242399843|ref|YP_002995268.1| - 1e-73 245.8 0.8 1.2e-73 245.6 0.8 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH PF00465.19 gi|242399843|ref|YP_002995268.1| - 0.0045 15.9 0.4 0.015 14.2 0.1 1.8 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase PrpR_N PF06506.11 gi|242399843|ref|YP_002995268.1| - 0.024 14.2 0.2 0.05 13.2 0.2 1.6 1 1 0 1 1 1 0 Propionate catabolism activator CoA_binding_2 PF13380.6 gi|242399843|ref|YP_002995268.1| - 0.027 15.0 0.2 4.1 7.9 0.0 2.2 1 1 1 2 2 2 0 CoA binding domain Fe-ADH_2 PF13685.6 gi|242399843|ref|YP_002995268.1| - 0.03 14.0 0.1 0.038 13.7 0.1 1.3 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase DUF4423 PF14394.6 gi|242399843|ref|YP_002995268.1| - 0.13 11.9 0.7 0.27 10.9 0.5 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Rubrerythrin PF02915.17 gi|242399844|ref|YP_002995269.1| - 4.4e-12 46.6 16.1 8.3e-12 45.7 16.1 1.5 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|242399844|ref|YP_002995269.1| - 0.0051 17.0 5.5 0.024 14.9 0.5 2.2 1 1 1 2 2 2 2 Ferritin-like domain TMF_DNA_bd PF12329.8 gi|242399844|ref|YP_002995269.1| - 0.013 15.5 2.6 0.021 14.8 0.7 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding S-AdoMet_synt_C PF02773.16 gi|242399844|ref|YP_002995269.1| - 0.22 11.5 0.8 0.33 11.0 0.1 1.6 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, C-terminal domain Acetyltransf_1 PF00583.25 gi|242399845|ref|YP_002995270.1| - 7.4e-14 52.0 0.1 9.7e-14 51.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|242399845|ref|YP_002995270.1| - 2.4e-09 37.5 0.0 3.7e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|242399845|ref|YP_002995270.1| - 2e-06 27.9 0.0 3.1e-06 27.3 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|242399845|ref|YP_002995270.1| - 6.6e-06 26.1 0.0 1.3e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|242399845|ref|YP_002995270.1| - 0.0012 18.8 0.0 0.0019 18.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|242399845|ref|YP_002995270.1| - 0.0093 16.1 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase AhpC-TSA PF00578.21 gi|242399846|ref|YP_002995271.1| - 8e-35 119.5 0.0 9.7e-35 119.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|242399846|ref|YP_002995271.1| - 3.7e-19 68.9 0.0 4.5e-19 68.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|242399846|ref|YP_002995271.1| - 2.8e-08 33.9 0.0 6.5e-08 32.7 0.0 1.6 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.6 gi|242399846|ref|YP_002995271.1| - 0.00025 21.3 0.0 0.00035 20.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like DUF899 PF05988.12 gi|242399846|ref|YP_002995271.1| - 0.01 15.4 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) HicA_toxin PF07927.12 gi|242399846|ref|YP_002995271.1| - 0.025 14.6 0.1 0.052 13.6 0.1 1.5 1 0 0 1 1 1 0 HicA toxin of bacterial toxin-antitoxin, GSHPx PF00255.19 gi|242399846|ref|YP_002995271.1| - 0.053 13.1 0.0 0.081 12.5 0.0 1.3 1 0 0 1 1 1 0 Glutathione peroxidase Rubrerythrin PF02915.17 gi|242399847|ref|YP_002995272.1| - 3.2e-17 63.2 14.9 3.8e-17 63.0 14.9 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|242399847|ref|YP_002995272.1| - 4.5e-07 30.1 4.1 0.0087 16.3 0.2 2.1 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.10 gi|242399847|ref|YP_002995272.1| - 5.4e-07 29.9 3.4 0.00038 20.8 0.5 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) FA_desaturase_2 PF03405.14 gi|242399847|ref|YP_002995272.1| - 0.012 14.4 0.9 3 6.6 0.0 2.2 1 1 0 2 2 2 0 Fatty acid desaturase DUF2202 PF09968.9 gi|242399847|ref|YP_002995272.1| - 0.019 14.8 2.4 0.026 14.4 2.4 1.2 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) SKA2 PF16740.5 gi|242399847|ref|YP_002995272.1| - 0.025 14.4 0.4 0.053 13.3 0.4 1.5 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 DUF3231 PF11553.8 gi|242399847|ref|YP_002995272.1| - 0.067 12.8 3.0 2.9 7.5 0.1 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3231) Coat_F PF07875.12 gi|242399847|ref|YP_002995272.1| - 0.12 12.6 0.5 2.9 8.2 0.1 2.3 2 0 0 2 2 2 0 Coat F domain DUF1657 PF07870.11 gi|242399847|ref|YP_002995272.1| - 0.14 12.1 1.8 7.7 6.5 0.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) PhoU PF01895.19 gi|242399848|ref|YP_002995273.1| - 1.8e-19 69.9 4.1 1.6e-11 44.5 0.4 2.3 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.27 gi|242399849|ref|YP_002995274.1| - 1.2e-33 116.5 0.0 1.5e-33 116.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242399849|ref|YP_002995274.1| - 5.6e-09 36.2 0.0 5.4e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|242399849|ref|YP_002995274.1| - 1.1e-07 31.5 0.0 2.4e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|242399849|ref|YP_002995274.1| - 0.00018 21.4 0.0 0.49 10.0 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|242399849|ref|YP_002995274.1| - 0.00033 20.3 0.0 0.0006 19.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|242399849|ref|YP_002995274.1| - 0.00044 20.5 0.0 0.0008 19.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|242399849|ref|YP_002995274.1| - 0.002 18.5 0.0 0.0025 18.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|242399849|ref|YP_002995274.1| - 0.0064 16.2 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain PRK PF00485.18 gi|242399849|ref|YP_002995274.1| - 0.0068 16.2 0.0 0.013 15.2 0.0 1.5 2 0 0 2 2 1 1 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|242399849|ref|YP_002995274.1| - 0.009 16.0 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|242399849|ref|YP_002995274.1| - 0.0096 15.8 0.0 0.026 14.4 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA PF00004.29 gi|242399849|ref|YP_002995274.1| - 0.0098 16.3 0.0 1.4 9.3 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|242399849|ref|YP_002995274.1| - 0.012 16.2 0.0 0.022 15.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|242399849|ref|YP_002995274.1| - 0.017 14.9 0.0 0.058 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|242399849|ref|YP_002995274.1| - 0.027 13.9 0.0 0.93 8.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein RNA_helicase PF00910.22 gi|242399849|ref|YP_002995274.1| - 0.036 14.4 0.0 0.28 11.6 0.0 2.1 2 0 0 2 2 2 0 RNA helicase ATPase_2 PF01637.18 gi|242399849|ref|YP_002995274.1| - 0.042 13.7 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea AAA_27 PF13514.6 gi|242399849|ref|YP_002995274.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|242399849|ref|YP_002995274.1| - 0.082 13.5 0.0 0.2 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|242399849|ref|YP_002995274.1| - 0.12 11.9 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|242399849|ref|YP_002995274.1| - 0.13 11.4 0.0 0.24 10.6 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|242399849|ref|YP_002995274.1| - 0.15 12.0 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) BPD_transp_1 PF00528.22 gi|242399850|ref|YP_002995275.1| - 6.2e-17 61.9 14.6 6.2e-17 61.9 14.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|242399851|ref|YP_002995276.1| - 5.4e-11 42.6 24.1 3.7e-10 39.8 19.4 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component AP_endonuc_2 PF01261.24 gi|242399852|ref|YP_002995277.1| - 3.7e-20 72.3 0.5 5e-20 71.8 0.5 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PBP_like_2 PF12849.7 gi|242399853|ref|YP_002995278.1| - 2.6e-56 191.4 0.3 3.4e-56 191.0 0.3 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|242399853|ref|YP_002995278.1| - 1.7e-18 67.7 4.2 2.1e-18 67.3 4.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|242399853|ref|YP_002995278.1| - 6.2e-06 25.5 0.0 9.3e-05 21.6 0.0 2.2 1 1 0 1 1 1 1 PBP superfamily domain OrfB_IS605 PF01385.19 gi|242399854|ref|YP_002995279.1| - 4.2e-31 107.7 0.1 8.2e-31 106.7 0.1 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|242399854|ref|YP_002995279.1| - 1.5e-19 69.6 0.0 3e-19 68.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|242399854|ref|YP_002995279.1| - 0.0012 18.2 0.2 0.0031 17.0 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain RuvX PF03652.15 gi|242399854|ref|YP_002995279.1| - 0.0023 18.3 0.0 0.0081 16.5 0.0 1.9 1 1 0 1 1 1 1 Holliday junction resolvase MAP65_ASE1 PF03999.12 gi|242399854|ref|YP_002995279.1| - 0.034 12.9 0.2 0.049 12.3 0.2 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) Zn_Tnp_IS1595 PF12760.7 gi|242399854|ref|YP_002995279.1| - 0.11 12.5 0.5 0.3 11.1 0.5 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain RHH_1 PF01402.21 gi|242399855|ref|YP_002995280.1| - 0.015 15.3 0.3 0.029 14.3 0.3 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Rubrerythrin PF02915.17 gi|242399857|ref|YP_002995282.1| - 2.9e-07 30.9 3.7 3.6e-07 30.7 3.7 1.2 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|242399857|ref|YP_002995282.1| - 1.3e-05 25.5 0.5 2e-05 24.9 0.5 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|242399857|ref|YP_002995282.1| - 0.035 14.0 4.1 0.12 12.3 1.8 2.1 1 1 1 2 2 2 0 Ferritin-like domain DUF2875 PF11394.8 gi|242399857|ref|YP_002995282.1| - 0.13 11.1 0.0 0.14 11.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2875) Rubrerythrin PF02915.17 gi|242399858|ref|YP_002995283.1| - 6.3e-05 23.4 7.1 9.1e-05 22.9 7.1 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|242399858|ref|YP_002995283.1| - 0.0029 17.8 0.6 0.0039 17.4 0.6 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|242399858|ref|YP_002995283.1| - 0.0092 16.3 2.2 0.0093 16.3 0.3 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF2383) OpuAC PF04069.12 gi|242399859|ref|YP_002995284.1| - 2.6e-46 158.3 0.0 3.1e-46 158.1 0.0 1.1 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system BPD_transp_1 PF00528.22 gi|242399860|ref|YP_002995285.1| - 5.6e-23 81.6 15.5 7.1e-23 81.3 15.5 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MCR_alpha PF02249.17 gi|242399860|ref|YP_002995285.1| - 0.04 14.4 0.0 0.059 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyl-coenzyme M reductase alpha subunit, C-terminal domain BPD_transp_1 PF00528.22 gi|242399861|ref|YP_002995286.1| - 5.8e-24 84.8 13.2 7.5e-24 84.5 13.2 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component HTH_AsnC-type PF13404.6 gi|242399861|ref|YP_002995286.1| - 0.09 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain ABC_tran PF00005.27 gi|242399862|ref|YP_002995287.1| - 3.5e-35 121.5 0.0 7e-35 120.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|242399862|ref|YP_002995287.1| - 1.4e-10 41.5 0.6 0.00027 20.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|242399862|ref|YP_002995287.1| - 2.4e-06 28.1 0.0 5e-06 27.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain CBS PF00571.28 gi|242399862|ref|YP_002995287.1| - 1.1e-05 25.8 0.0 0.00021 21.7 0.0 2.7 1 1 1 2 2 2 1 CBS domain SMC_N PF02463.19 gi|242399862|ref|YP_002995287.1| - 3.3e-05 23.4 0.0 0.011 15.2 0.0 2.7 2 1 1 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|242399862|ref|YP_002995287.1| - 0.00027 20.6 0.0 0.00048 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|242399862|ref|YP_002995287.1| - 0.0005 19.8 0.0 0.0013 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|242399862|ref|YP_002995287.1| - 0.0006 20.1 0.1 0.0016 18.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|242399862|ref|YP_002995287.1| - 0.00095 18.6 0.0 0.0022 17.4 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI DEAD PF00270.29 gi|242399862|ref|YP_002995287.1| - 0.001 18.8 0.0 0.012 15.4 0.0 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_5 PF07728.14 gi|242399862|ref|YP_002995287.1| - 0.0012 18.8 0.0 0.0027 17.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|242399862|ref|YP_002995287.1| - 0.0013 18.5 0.0 0.094 12.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|242399862|ref|YP_002995287.1| - 0.0017 18.3 0.0 0.0071 16.3 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA_15 PF13175.6 gi|242399862|ref|YP_002995287.1| - 0.002 17.9 0.5 0.008 15.9 0.5 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|242399862|ref|YP_002995287.1| - 0.0041 17.3 0.0 0.015 15.4 0.0 2.0 2 0 0 2 2 1 1 AAA domain RsgA_GTPase PF03193.16 gi|242399862|ref|YP_002995287.1| - 0.0064 16.4 0.1 0.022 14.7 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 gi|242399862|ref|YP_002995287.1| - 0.013 15.5 0.0 0.036 14.0 0.0 1.8 2 0 0 2 2 1 0 Rad17 P-loop domain G-alpha PF00503.20 gi|242399862|ref|YP_002995287.1| - 0.013 14.7 0.0 0.018 14.2 0.0 1.4 1 1 0 1 1 1 0 G-protein alpha subunit AAA_23 PF13476.6 gi|242399862|ref|YP_002995287.1| - 0.014 15.9 2.0 0.055 14.0 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|242399862|ref|YP_002995287.1| - 0.015 15.9 0.1 0.049 14.2 0.0 2.0 2 1 0 2 2 1 0 AAA domain cobW PF02492.19 gi|242399862|ref|YP_002995287.1| - 0.015 14.9 0.0 0.032 13.8 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|242399862|ref|YP_002995287.1| - 0.021 14.4 0.2 0.17 11.5 0.0 2.4 3 0 0 3 3 3 0 AAA domain TsaE PF02367.17 gi|242399862|ref|YP_002995287.1| - 0.021 14.8 0.0 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|242399862|ref|YP_002995287.1| - 0.022 13.8 0.0 0.045 12.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein TIP49 PF06068.13 gi|242399862|ref|YP_002995287.1| - 0.028 13.7 0.2 0.073 12.3 0.0 1.7 2 1 1 3 3 3 0 TIP49 P-loop domain AAA PF00004.29 gi|242399862|ref|YP_002995287.1| - 0.032 14.7 0.0 0.17 12.3 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|242399862|ref|YP_002995287.1| - 0.035 14.1 0.0 0.069 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|242399862|ref|YP_002995287.1| - 0.048 13.4 0.1 0.22 11.2 0.1 2.0 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.6 gi|242399862|ref|YP_002995287.1| - 0.063 13.6 0.0 0.16 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF4720 PF15846.5 gi|242399862|ref|YP_002995287.1| - 0.069 13.0 0.0 0.21 11.5 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4720) Zeta_toxin PF06414.12 gi|242399862|ref|YP_002995287.1| - 0.077 12.3 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin ATP_bind_1 PF03029.17 gi|242399862|ref|YP_002995287.1| - 0.13 12.1 0.1 1.3 8.7 0.0 2.3 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein APS_kinase PF01583.20 gi|242399862|ref|YP_002995287.1| - 0.16 11.9 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_27 PF13514.6 gi|242399862|ref|YP_002995287.1| - 0.16 11.5 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain OpuAC PF04069.12 gi|242399863|ref|YP_002995288.1| - 1.3e-68 231.4 0.6 1.5e-68 231.2 0.6 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Zip PF02535.22 gi|242399864|ref|YP_002995289.1| - 2.2e-22 79.7 25.3 4.7e-19 68.8 6.4 2.6 1 1 1 2 2 2 2 ZIP Zinc transporter Rubrerythrin PF02915.17 gi|242399865|ref|YP_002995290.1| - 4.3e-26 92.0 6.0 5.2e-26 91.7 6.0 1.1 1 0 0 1 1 1 1 Rubrerythrin Mn_catalase PF05067.12 gi|242399865|ref|YP_002995290.1| - 0.00025 20.1 0.4 0.0093 15.0 0.1 2.0 1 1 1 2 2 2 2 Manganese containing catalase Ferritin PF00210.24 gi|242399865|ref|YP_002995290.1| - 0.0007 19.5 1.8 0.12 12.3 0.3 2.1 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.10 gi|242399865|ref|YP_002995290.1| - 0.0084 16.4 0.4 0.11 12.9 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.6 gi|242399865|ref|YP_002995290.1| - 0.0098 16.1 1.7 0.41 10.9 0.2 2.1 1 1 1 2 2 2 2 Ferritin-like domain KleE PF17394.2 gi|242399866|ref|YP_002995291.1| - 4.1 7.7 8.5 0.17 12.1 0.7 2.5 1 1 2 3 3 3 0 Uncharacterized KleE stable inheritance protein Desulfoferrodox PF01880.18 gi|242399867|ref|YP_002995292.1| - 1.9e-31 108.5 0.1 2.2e-31 108.3 0.1 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin Rubredoxin PF00301.20 gi|242399868|ref|YP_002995293.1| - 1.6e-25 88.9 3.9 1.7e-25 88.7 3.9 1.0 1 0 0 1 1 1 1 Rubredoxin zinc_ribbon_10 PF10058.9 gi|242399868|ref|YP_002995293.1| - 0.0017 18.1 0.7 0.33 10.7 0.0 2.1 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein zf-Sec23_Sec24 PF04810.15 gi|242399868|ref|YP_002995293.1| - 0.0018 18.3 0.4 0.42 10.7 0.0 2.1 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger Vps36-NZF-N PF16988.5 gi|242399868|ref|YP_002995293.1| - 0.0031 16.9 1.6 0.32 10.4 0.0 2.1 2 0 0 2 2 2 2 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-RanBP PF00641.18 gi|242399868|ref|YP_002995293.1| - 0.017 14.4 4.5 0.52 9.7 0.3 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Prok-RING_1 PF14446.6 gi|242399868|ref|YP_002995293.1| - 0.025 14.5 0.4 0.63 10.0 0.1 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 RbpA PF13397.6 gi|242399868|ref|YP_002995293.1| - 0.036 14.7 0.8 0.53 10.9 0.1 2.0 1 1 1 2 2 2 0 RNA polymerase-binding protein TF_Zn_Ribbon PF08271.12 gi|242399868|ref|YP_002995293.1| - 0.038 13.5 1.9 3.8 7.1 0.4 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|242399868|ref|YP_002995293.1| - 0.046 13.4 1.1 2.4 8.0 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Desulfoferrod_N PF06397.12 gi|242399868|ref|YP_002995293.1| - 0.068 12.8 1.3 0.37 10.5 0.4 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain PHD_4 PF16866.5 gi|242399868|ref|YP_002995293.1| - 0.081 13.0 2.1 0.21 11.7 2.1 1.7 1 1 0 1 1 1 0 PHD-finger zf-MIZ PF02891.20 gi|242399868|ref|YP_002995293.1| - 0.1 12.4 3.2 1.5 8.6 0.2 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger ADK_lid PF05191.14 gi|242399868|ref|YP_002995293.1| - 0.1 12.6 1.8 0.9 9.6 1.8 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid HypA PF01155.19 gi|242399868|ref|YP_002995293.1| - 0.12 12.3 0.1 0.14 12.2 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-H2C2_2 PF13465.6 gi|242399868|ref|YP_002995293.1| - 0.26 11.8 1.1 24 5.5 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_2 PF13240.6 gi|242399868|ref|YP_002995293.1| - 0.3 10.9 2.3 8.6 6.2 0.4 2.5 2 1 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|242399868|ref|YP_002995293.1| - 0.41 10.6 3.5 5.1 7.1 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Rubrerythrin PF02915.17 gi|242399869|ref|YP_002995294.1| - 3.3e-26 92.3 11.4 3.3e-25 89.1 11.4 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|242399869|ref|YP_002995294.1| - 0.0002 21.3 8.7 0.001 19.0 8.7 1.9 1 1 0 1 1 1 1 Ferritin-like domain Cys_rich_CPCC PF14206.6 gi|242399869|ref|YP_002995294.1| - 0.011 15.6 4.0 0.058 13.2 2.4 2.3 2 0 0 2 2 2 0 Cysteine-rich CPCC DZR PF12773.7 gi|242399869|ref|YP_002995294.1| - 0.037 14.1 0.2 0.055 13.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Exonuc_X-T_C PF08411.10 gi|242399869|ref|YP_002995294.1| - 0.04 13.0 0.0 0.077 12.1 0.0 1.4 1 0 0 1 1 1 0 Exonuclease C-terminal zinc_ribbon_2 PF13240.6 gi|242399869|ref|YP_002995294.1| - 0.041 13.6 2.0 0.083 12.6 2.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain FdhE PF04216.12 gi|242399869|ref|YP_002995294.1| - 0.042 13.7 0.2 0.042 13.7 0.2 2.0 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation LUC7 PF03194.15 gi|242399869|ref|YP_002995294.1| - 0.047 13.4 1.0 0.069 12.8 1.0 1.2 1 0 0 1 1 1 0 LUC7 N_terminus HSP70 PF00012.20 gi|242399869|ref|YP_002995294.1| - 0.048 11.8 0.4 0.062 11.5 0.4 1.0 1 0 0 1 1 1 0 Hsp70 protein zf-FPG_IleRS PF06827.14 gi|242399869|ref|YP_002995294.1| - 0.067 13.1 4.4 0.81 9.6 0.8 2.8 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS CENP-Q PF13094.6 gi|242399869|ref|YP_002995294.1| - 0.074 13.3 0.2 0.098 12.9 0.2 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit RecR PF02132.15 gi|242399869|ref|YP_002995294.1| - 0.15 11.6 0.3 0.55 9.9 0.3 2.0 2 0 0 2 2 2 0 RecR protein TF_Zn_Ribbon PF08271.12 gi|242399869|ref|YP_002995294.1| - 0.21 11.1 3.2 10 5.7 0.4 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.20 gi|242399869|ref|YP_002995294.1| - 0.23 11.5 6.0 1.3 9.1 0.6 2.3 1 1 1 2 2 2 0 Rubredoxin DNA_ligase_ZBD PF03119.16 gi|242399869|ref|YP_002995294.1| - 0.3 11.2 7.4 3.8 7.6 0.6 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|242399869|ref|YP_002995294.1| - 0.37 11.0 3.7 7.7 6.7 3.6 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Auto_anti-p27 PF06677.12 gi|242399869|ref|YP_002995294.1| - 0.63 10.2 2.8 7.7 6.8 0.4 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|242399869|ref|YP_002995294.1| - 2 8.0 5.2 4.2 6.9 5.2 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Zn-C2H2_12 PF18112.1 gi|242399869|ref|YP_002995294.1| - 6.6 7.3 8.3 16 6.0 0.5 2.9 3 0 0 3 3 3 0 Autophagy receptor zinc finger-C2H2 domain Pyr_redox_2 PF07992.14 gi|242399870|ref|YP_002995295.1| - 7.9e-55 186.2 1.0 1e-54 185.8 1.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|242399870|ref|YP_002995295.1| - 6.6e-22 77.9 1.4 4.3e-15 56.0 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|242399870|ref|YP_002995295.1| - 4e-08 32.9 0.0 7.2e-05 22.2 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|242399870|ref|YP_002995295.1| - 4.3e-06 26.2 0.5 0.018 14.3 0.1 2.4 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|242399870|ref|YP_002995295.1| - 1.4e-05 24.9 1.0 1.5 8.4 0.0 4.0 4 0 0 4 4 4 2 FAD dependent oxidoreductase TrkA_N PF02254.18 gi|242399870|ref|YP_002995295.1| - 0.00089 19.5 0.6 0.11 12.7 0.0 2.8 3 0 0 3 3 3 1 TrkA-N domain NAD_binding_8 PF13450.6 gi|242399870|ref|YP_002995295.1| - 0.0031 17.7 0.8 0.62 10.3 0.5 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|242399870|ref|YP_002995295.1| - 0.0035 17.7 0.1 0.41 11.1 0.0 2.5 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_2 PF00890.24 gi|242399870|ref|YP_002995295.1| - 0.0039 16.3 1.8 6.7 5.7 0.3 3.3 2 1 1 3 3 3 2 FAD binding domain Rubredoxin_C PF18267.1 gi|242399870|ref|YP_002995295.1| - 0.004 17.1 0.2 0.013 15.4 0.2 2.0 1 0 0 1 1 1 1 Rubredoxin NAD+ reductase C-terminal domain DUF3725 PF12523.8 gi|242399870|ref|YP_002995295.1| - 0.0086 16.4 0.2 0.089 13.1 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3725) 3HCDH_N PF02737.18 gi|242399870|ref|YP_002995295.1| - 0.01 15.7 0.0 0.14 12.0 0.0 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|242399870|ref|YP_002995295.1| - 0.015 15.0 1.1 0.32 10.6 0.4 2.4 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA K_oxygenase PF13434.6 gi|242399870|ref|YP_002995295.1| - 0.015 14.5 0.0 0.21 10.7 0.0 2.0 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|242399870|ref|YP_002995295.1| - 0.024 13.7 0.3 3.3 6.7 0.0 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein HI0933_like PF03486.14 gi|242399870|ref|YP_002995295.1| - 0.045 12.5 0.6 9.7 4.8 0.0 3.4 4 0 0 4 4 4 0 HI0933-like protein Oxidored_q6 PF01058.22 gi|242399870|ref|YP_002995295.1| - 0.12 12.2 0.0 0.43 10.4 0.0 2.0 2 0 0 2 2 2 0 NADH ubiquinone oxidoreductase, 20 Kd subunit Rubrerythrin PF02915.17 gi|242399871|ref|YP_002995296.1| - 2.6e-20 73.2 4.2 3.3e-20 72.9 4.2 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2202 PF09968.9 gi|242399871|ref|YP_002995296.1| - 0.00091 19.1 0.7 1.1 9.1 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized protein domain (DUF2202) Ferritin_2 PF13668.6 gi|242399871|ref|YP_002995296.1| - 0.007 16.6 4.9 0.016 15.4 1.2 2.1 1 1 1 2 2 2 2 Ferritin-like domain DDE_Tnp_1_3 PF13612.6 gi|242399871|ref|YP_002995296.1| - 0.15 12.1 0.0 0.21 11.6 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain Lactamase_B PF00753.27 gi|242399872|ref|YP_002995297.1| - 1.2e-07 31.9 0.8 2.5e-07 30.9 0.8 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|242399872|ref|YP_002995297.1| - 4.5e-05 23.1 0.0 7.1e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.25 gi|242399872|ref|YP_002995297.1| - 0.00059 20.1 0.0 0.0012 19.0 0.0 1.6 2 0 0 2 2 2 1 Flavodoxin Lactamase_B_3 PF13483.6 gi|242399872|ref|YP_002995297.1| - 0.003 17.5 0.0 0.0068 16.3 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|242399872|ref|YP_002995297.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain AhpC-TSA PF00578.21 gi|242399873|ref|YP_002995298.1| - 3.8e-34 117.3 0.0 4.4e-34 117.1 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|242399873|ref|YP_002995298.1| - 1.2e-21 77.0 0.0 1.4e-21 76.7 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|242399873|ref|YP_002995298.1| - 3.1e-05 23.9 0.0 4.6e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.6 gi|242399873|ref|YP_002995298.1| - 0.02 15.2 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like GSHPx PF00255.19 gi|242399873|ref|YP_002995298.1| - 0.054 13.1 0.0 0.08 12.5 0.0 1.3 1 0 0 1 1 1 0 Glutathione peroxidase TPP_enzyme_C PF02775.21 gi|242399874|ref|YP_002995299.1| - 1.1e-31 109.6 0.2 2.3e-31 108.6 0.2 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|242399874|ref|YP_002995299.1| - 3.6e-25 87.9 1.1 6.3e-25 87.1 0.5 1.7 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Pet100 PF09803.9 gi|242399874|ref|YP_002995299.1| - 0.0059 17.1 2.1 0.56 10.8 0.3 2.3 2 0 0 2 2 2 2 Pet100 POR_N PF01855.19 gi|242399875|ref|YP_002995300.1| - 6.2e-56 189.7 0.0 9.1e-56 189.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|242399875|ref|YP_002995300.1| - 6.8e-31 107.7 0.1 1.8e-30 106.3 0.1 1.7 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|242399875|ref|YP_002995300.1| - 0.00051 20.3 0.0 0.0015 18.8 0.0 1.9 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|242399875|ref|YP_002995300.1| - 0.00054 19.6 0.2 0.0014 18.3 0.2 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AhpC-TSA PF00578.21 gi|242399876|ref|YP_002995301.1| - 2.4e-31 108.2 0.0 3.5e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|242399876|ref|YP_002995301.1| - 2.5e-14 53.2 0.0 3.2e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|242399876|ref|YP_002995301.1| - 1.1e-09 37.9 0.2 2e-09 37.2 0.2 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AGOG PF09171.10 gi|242399877|ref|YP_002995302.1| - 3.2e-83 278.9 0.4 4.7e-83 278.3 0.4 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase Fer4 PF00037.27 gi|242399878|ref|YP_002995303.1| - 8.1e-14 50.8 10.6 6e-08 32.2 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|242399878|ref|YP_002995303.1| - 1.7e-11 44.5 10.4 2.9e-11 43.8 10.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|242399878|ref|YP_002995303.1| - 1.6e-10 41.0 18.7 6.5e-08 32.6 9.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|242399878|ref|YP_002995303.1| - 2.7e-08 33.8 9.3 4.5e-08 33.1 9.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|242399878|ref|YP_002995303.1| - 3e-08 33.7 19.6 2.5e-06 27.5 11.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|242399878|ref|YP_002995303.1| - 4.9e-08 33.8 7.4 0.00095 20.1 0.0 2.7 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|242399878|ref|YP_002995303.1| - 3.6e-05 24.2 9.0 0.025 15.1 1.7 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|242399878|ref|YP_002995303.1| - 4e-05 23.4 12.9 0.0055 16.7 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|242399878|ref|YP_002995303.1| - 0.0001 22.2 14.0 0.0017 18.3 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|242399878|ref|YP_002995303.1| - 0.00013 22.6 4.2 0.3 11.9 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|242399878|ref|YP_002995303.1| - 0.00055 20.1 8.2 0.015 15.5 0.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|242399878|ref|YP_002995303.1| - 0.0015 19.3 17.8 0.019 15.9 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|242399878|ref|YP_002995303.1| - 0.0019 19.0 3.1 0.35 11.8 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|242399878|ref|YP_002995303.1| - 0.0067 16.9 11.8 0.35 11.3 12.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|242399878|ref|YP_002995303.1| - 0.0084 16.6 10.3 0.12 12.9 2.1 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|242399878|ref|YP_002995303.1| - 0.036 14.6 14.5 0.37 11.4 4.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Complex1_49kDa PF00346.19 gi|242399879|ref|YP_002995304.1| - 3.7e-71 239.4 0.0 2e-69 233.7 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|242399879|ref|YP_002995304.1| - 0.2 10.5 0.0 0.33 9.8 0.0 1.3 1 0 0 1 1 1 0 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|242399880|ref|YP_002995305.1| - 6.9e-23 81.6 0.7 8.6e-23 81.3 0.7 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Autophagy_N PF03986.13 gi|242399880|ref|YP_002995305.1| - 0.11 12.5 0.2 0.15 12.0 0.2 1.3 1 1 0 1 1 1 0 Autophagocytosis associated protein (Atg3), N-terminal domain Oxidored_q6 PF01058.22 gi|242399881|ref|YP_002995306.1| - 8.4e-19 67.7 0.0 1.2e-18 67.1 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RE_NgoFVII PF09565.10 gi|242399881|ref|YP_002995306.1| - 0.052 12.9 0.0 0.073 12.4 0.0 1.2 1 0 0 1 1 1 0 NgoFVII restriction endonuclease NADHdh PF00146.21 gi|242399882|ref|YP_002995307.1| - 7.4e-51 173.2 27.0 8.7e-51 173.0 27.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|242399883|ref|YP_002995308.1| - 4.1e-62 210.0 31.6 4.1e-62 210.0 31.6 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter SLATT_fungal PF18142.1 gi|242399883|ref|YP_002995308.1| - 4.4 7.3 4.9 2.3 8.2 0.9 2.6 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain Proton_antipo_M PF00361.20 gi|242399884|ref|YP_002995309.1| - 1.6e-62 211.4 25.1 1.6e-62 211.4 25.1 2.5 3 0 0 3 3 3 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|242399884|ref|YP_002995309.1| - 1.1e-05 24.9 12.8 1.1e-05 24.9 12.8 2.7 3 2 0 3 3 3 1 NADH dehydrogenase I, subunit N related protein PIRT PF15099.6 gi|242399884|ref|YP_002995309.1| - 0.0053 16.3 0.5 0.0053 16.3 0.5 3.5 4 2 0 4 4 4 1 Phosphoinositide-interacting protein family Oxidored_q2 PF00420.24 gi|242399885|ref|YP_002995310.1| - 9.5e-33 112.0 3.2 1.1e-32 111.7 3.2 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|242399885|ref|YP_002995310.1| - 0.0011 18.9 2.3 0.0011 18.9 2.3 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) DUF4418 PF14387.6 gi|242399885|ref|YP_002995310.1| - 0.43 10.8 5.0 0.28 11.4 0.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) MnhB PF04039.13 gi|242399886|ref|YP_002995311.1| - 4.2e-23 82.0 14.1 4.2e-23 82.0 14.1 2.2 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF5134 PF17197.4 gi|242399886|ref|YP_002995311.1| - 0.022 14.7 2.6 0.11 12.3 0.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF5134) OPA3 PF07047.12 gi|242399886|ref|YP_002995311.1| - 0.18 11.6 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Optic atrophy 3 protein (OPA3) DUF4040 PF13244.6 gi|242399887|ref|YP_002995312.1| - 1.1e-16 60.8 10.4 1.3e-16 60.5 10.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) TspO_MBR PF03073.15 gi|242399887|ref|YP_002995312.1| - 0.01 15.9 6.4 0.013 15.5 6.4 1.1 1 0 0 1 1 1 0 TspO/MBR family DUF3084 PF11283.8 gi|242399887|ref|YP_002995312.1| - 0.094 12.7 1.2 0.094 12.7 1.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3084) DUF2070 PF09843.9 gi|242399887|ref|YP_002995312.1| - 1.6 6.9 5.2 1.8 6.8 5.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2721 PF11026.8 gi|242399887|ref|YP_002995312.1| - 2.3 8.1 10.9 0.43 10.5 7.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) DUF4418 PF14387.6 gi|242399887|ref|YP_002995312.1| - 3.8 7.7 8.0 0.46 10.7 2.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) PhaG_MnhG_YufB PF03334.14 gi|242399888|ref|YP_002995313.1| - 6.4e-25 87.2 4.9 8.1e-25 86.9 4.9 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit TarH PF02203.15 gi|242399888|ref|YP_002995313.1| - 0.32 10.9 0.7 0.52 10.2 0.7 1.5 1 0 0 1 1 1 0 Tar ligand binding domain homologue MrpF_PhaF PF04066.13 gi|242399889|ref|YP_002995314.1| - 3.1e-20 72.3 11.4 3.1e-20 72.3 11.4 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) IncD PF17628.2 gi|242399889|ref|YP_002995314.1| - 0.064 13.0 4.5 0.076 12.8 4.3 1.3 1 1 0 1 1 1 0 Inclusion membrane protein D DUF2417 PF10329.9 gi|242399889|ref|YP_002995314.1| - 0.28 10.6 3.9 0.33 10.3 3.9 1.0 1 0 0 1 1 1 0 Region of unknown function (DUF2417) MNHE PF01899.16 gi|242399890|ref|YP_002995315.1| - 1.6e-46 157.7 0.3 1.8e-46 157.5 0.3 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit TspO_MBR PF03073.15 gi|242399890|ref|YP_002995315.1| - 0.027 14.5 2.6 0.04 14.0 2.6 1.2 1 0 0 1 1 1 0 TspO/MBR family ACT PF01842.25 gi|242399891|ref|YP_002995316.1| - 1.8e-07 30.8 0.1 3.5e-07 29.9 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|242399891|ref|YP_002995316.1| - 0.021 14.6 0.1 0.037 13.8 0.1 1.4 1 0 0 1 1 1 0 ACT domain HU-CCDC81_euk_2 PF18289.1 gi|242399891|ref|YP_002995316.1| - 0.048 13.8 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 Radical_SAM PF04055.21 gi|242399892|ref|YP_002995317.1| - 4.9e-25 88.8 0.1 1.4e-24 87.3 0.0 1.7 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|242399892|ref|YP_002995317.1| - 0.0051 16.9 0.0 0.013 15.6 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain S1 PF00575.23 gi|242399892|ref|YP_002995317.1| - 0.027 14.8 0.5 0.42 11.0 0.2 2.5 2 0 0 2 2 2 0 S1 RNA binding domain TRAM PF01938.20 gi|242399892|ref|YP_002995317.1| - 0.091 12.8 1.7 0.21 11.6 1.7 1.7 1 0 0 1 1 1 0 TRAM domain WD-3 PF09765.9 gi|242399892|ref|YP_002995317.1| - 0.15 11.3 0.1 0.95 8.7 0.0 2.0 2 0 0 2 2 2 0 WD-repeat region Epimerase_2 PF02350.19 gi|242399893|ref|YP_002995318.1| - 1.7e-119 398.8 0.0 1.9e-119 398.6 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase AIRC PF00731.20 gi|242399893|ref|YP_002995318.1| - 0.0026 17.3 0.0 0.35 10.4 0.0 2.2 2 0 0 2 2 2 2 AIR carboxylase Pyr_redox PF00070.27 gi|242399893|ref|YP_002995318.1| - 0.014 16.0 0.1 16 6.2 0.0 3.3 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_4 PF13439.6 gi|242399893|ref|YP_002995318.1| - 0.027 14.5 0.0 0.081 12.9 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|242399893|ref|YP_002995318.1| - 0.043 13.8 0.0 0.11 12.5 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|242399893|ref|YP_002995318.1| - 0.045 13.3 0.1 0.13 11.8 0.1 1.8 1 1 0 1 1 1 0 Glycosyl transferases group 1 Glyco_transf_28 PF03033.20 gi|242399893|ref|YP_002995318.1| - 0.1 12.7 0.1 0.35 10.9 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|242399894|ref|YP_002995319.1| - 6.9e-52 175.8 0.1 1.2e-51 174.9 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|242399894|ref|YP_002995319.1| - 2.7e-26 91.6 0.0 6.3e-26 90.4 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|242399894|ref|YP_002995319.1| - 6.3e-26 90.8 0.0 2.3e-25 89.1 0.0 2.0 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|242399894|ref|YP_002995319.1| - 2.5e-07 31.0 0.0 8.8e-07 29.2 0.0 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|242399894|ref|YP_002995319.1| - 3.2e-05 23.9 0.0 8.2e-05 22.6 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|242399894|ref|YP_002995319.1| - 0.00028 20.3 0.0 0.00062 19.1 0.0 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|242399894|ref|YP_002995319.1| - 0.0013 18.1 0.0 0.0053 16.1 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|242399894|ref|YP_002995319.1| - 0.0019 18.7 0.1 1.5 9.4 0.0 2.9 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|242399894|ref|YP_002995319.1| - 0.0042 17.1 0.0 0.15 12.0 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.14 gi|242399894|ref|YP_002995319.1| - 0.01 15.1 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|242399894|ref|YP_002995319.1| - 0.072 12.7 0.0 0.27 10.9 0.0 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|242399894|ref|YP_002995319.1| - 0.1 13.1 0.1 0.46 11.1 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_11 PF14833.6 gi|242399894|ref|YP_002995319.1| - 0.17 12.2 0.1 0.36 11.1 0.1 1.5 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DUF354 PF04007.12 gi|242399895|ref|YP_002995320.1| - 9.4e-89 297.8 0.1 1.1e-88 297.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|242399895|ref|YP_002995320.1| - 0.00033 20.7 0.0 0.00076 19.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 LpxB PF02684.15 gi|242399895|ref|YP_002995320.1| - 0.001 18.0 0.1 0.047 12.5 0.0 2.3 2 0 0 2 2 2 1 Lipid-A-disaccharide synthetase Glyco_trans_4_2 PF13477.6 gi|242399895|ref|YP_002995320.1| - 0.0078 16.2 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Epimerase_2 PF02350.19 gi|242399895|ref|YP_002995320.1| - 0.017 14.0 0.0 0.031 13.2 0.0 1.4 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Hydrolase_3 PF08282.12 gi|242399895|ref|YP_002995320.1| - 0.023 14.4 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase SpoIIM PF01944.17 gi|242399896|ref|YP_002995321.1| - 3.1e-31 108.5 19.4 3.7e-31 108.3 19.4 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M Lip_prot_lig_C PF10437.9 gi|242399897|ref|YP_002995322.1| - 2.2e-06 27.6 0.7 2.9e-06 27.2 0.6 1.3 1 1 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus tRNA-synt_1d PF00750.19 gi|242399898|ref|YP_002995323.1| - 4.2e-39 134.5 4.6 1.2e-24 86.9 2.3 2.3 1 1 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|242399898|ref|YP_002995323.1| - 8.6e-35 119.5 0.4 3.3e-34 117.6 0.4 2.1 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|242399898|ref|YP_002995323.1| - 1.5e-22 80.0 0.8 4.8e-22 78.3 0.1 2.3 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1e PF01406.19 gi|242399898|ref|YP_002995323.1| - 2.2e-05 23.9 0.0 4.6e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|242399898|ref|YP_002995323.1| - 0.0019 16.6 0.1 0.0035 15.6 0.1 1.5 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|242399898|ref|YP_002995323.1| - 0.065 12.0 0.3 0.5 9.1 0.1 2.5 3 0 0 3 3 3 0 tRNA synthetases class I (M) DMSP_lyase PF16867.5 gi|242399898|ref|YP_002995323.1| - 0.087 12.5 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase DUF4795 PF16043.5 gi|242399898|ref|YP_002995323.1| - 2.6 7.6 8.2 4.3 6.9 4.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) DHDPS PF00701.22 gi|242399899|ref|YP_002995324.1| - 2e-62 210.5 0.0 2.2e-62 210.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DHquinase_I PF01487.15 gi|242399899|ref|YP_002995324.1| - 0.01 16.1 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 0 Type I 3-dehydroquinase eRF1_2 PF03464.15 gi|242399900|ref|YP_002995325.1| - 6.5e-47 159.2 0.0 1.2e-46 158.3 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|242399900|ref|YP_002995325.1| - 2e-34 118.4 1.8 2.9e-34 117.9 0.6 1.9 2 0 0 2 2 2 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|242399900|ref|YP_002995325.1| - 1.9e-15 57.4 0.2 6e-15 55.7 0.0 2.0 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 gi|242399900|ref|YP_002995325.1| - 6.6e-15 55.6 0.0 2.2e-14 53.9 0.0 1.9 1 1 1 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_1 PF03463.15 gi|242399900|ref|YP_002995325.1| - 1.9e-10 40.9 0.0 3.1e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 MCM6_C PF18263.1 gi|242399900|ref|YP_002995325.1| - 0.0055 16.9 1.6 0.81 9.9 0.1 2.4 2 0 0 2 2 2 1 MCM6 C-terminal winged-helix domain HypA PF01155.19 gi|242399900|ref|YP_002995325.1| - 0.0055 16.7 0.1 0.012 15.7 0.1 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRPl_C4 PF17026.5 gi|242399900|ref|YP_002995325.1| - 0.026 14.6 0.3 0.054 13.6 0.3 1.5 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type baeRF_family12 PF18856.1 gi|242399900|ref|YP_002995325.1| - 0.027 15.0 0.0 0.076 13.6 0.0 1.8 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 12 SeqA_N PF17206.3 gi|242399900|ref|YP_002995325.1| - 0.028 13.7 0.0 19 4.6 0.0 3.4 3 0 0 3 3 3 0 SeqA protein N-terminal domain Zn-ribbon_8 PF09723.10 gi|242399900|ref|YP_002995325.1| - 0.048 13.8 1.0 0.11 12.7 0.3 1.9 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|242399900|ref|YP_002995325.1| - 0.11 12.6 0.4 0.19 11.8 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|242399900|ref|YP_002995325.1| - 0.59 9.6 2.8 7.2 6.2 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain BofA PF07441.11 gi|242399901|ref|YP_002995326.1| - 7.5e-07 29.3 23.2 9.6e-07 28.9 23.2 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA HEAT_2 PF13646.6 gi|242399902|ref|YP_002995327.1| - 9.3e-07 29.2 0.0 0.0057 17.0 0.0 2.4 2 1 0 2 2 2 2 HEAT repeats RTP1_C1 PF10363.9 gi|242399902|ref|YP_002995327.1| - 0.00032 20.8 0.0 0.00077 19.6 0.0 1.7 1 1 0 1 1 1 1 Required for nuclear transport of RNA pol II C-terminus 1 Adaptin_N PF01602.20 gi|242399902|ref|YP_002995327.1| - 0.0031 16.1 0.0 0.77 8.2 0.0 2.0 1 1 1 2 2 2 2 Adaptin N terminal region Cnd1 PF12717.7 gi|242399902|ref|YP_002995327.1| - 0.015 15.4 0.2 5 7.1 0.1 2.1 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 Rcd1 PF04078.13 gi|242399902|ref|YP_002995327.1| - 0.053 12.8 0.1 0.13 11.5 0.0 1.6 2 0 0 2 2 2 0 Cell differentiation family, Rcd1-like DUF1186 PF06685.11 gi|242399902|ref|YP_002995327.1| - 0.075 12.4 0.1 1.9 7.8 0.0 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1186) V-ATPase_H_C PF11698.8 gi|242399902|ref|YP_002995327.1| - 0.089 12.9 0.1 1.5 9.0 0.0 2.6 2 1 1 3 3 3 0 V-ATPase subunit H HEAT_EZ PF13513.6 gi|242399902|ref|YP_002995327.1| - 0.11 13.1 0.1 1.2 9.8 0.0 2.6 2 1 1 3 3 3 0 HEAT-like repeat HEAT PF02985.22 gi|242399902|ref|YP_002995327.1| - 0.16 12.3 0.1 3.6 8.1 0.0 3.0 4 0 0 4 4 4 0 HEAT repeat MazG PF03819.17 gi|242399903|ref|YP_002995328.1| - 1.7e-13 50.6 0.2 3.3e-13 49.6 0.0 1.6 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|242399903|ref|YP_002995328.1| - 2.6e-06 27.6 0.3 3.7e-06 27.1 0.3 1.3 1 1 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|242399903|ref|YP_002995328.1| - 0.0022 18.4 1.2 0.003 18.0 1.2 1.3 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase ECM11 PF15463.6 gi|242399903|ref|YP_002995328.1| - 0.1 13.2 0.3 0.13 12.9 0.3 1.1 1 0 0 1 1 1 0 Extracellular mutant protein 11 PIN PF01850.21 gi|242399904|ref|YP_002995329.1| - 1e-14 55.1 0.1 1.2e-14 54.9 0.1 1.0 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|242399904|ref|YP_002995329.1| - 0.00092 19.7 1.1 0.0013 19.3 1.1 1.3 1 0 0 1 1 1 1 PIN domain Pox_A11 PF05061.13 gi|242399904|ref|YP_002995329.1| - 0.021 14.1 0.2 0.022 14.1 0.2 1.1 1 0 0 1 1 1 0 Poxvirus A11 Protein Cwf_Cwc_15 PF04889.12 gi|242399905|ref|YP_002995330.1| - 0.01 15.6 0.1 0.012 15.4 0.1 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein ParD PF09386.10 gi|242399905|ref|YP_002995330.1| - 0.066 13.6 0.5 0.1 13.0 0.5 1.3 1 0 0 1 1 1 0 Antitoxin ParD TAF PF02969.17 gi|242399905|ref|YP_002995330.1| - 0.14 12.4 0.6 0.19 11.9 0.6 1.3 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) DUF2283 PF10049.9 gi|242399906|ref|YP_002995331.1| - 3.4e-18 65.6 4.6 4.7e-18 65.1 4.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) KTSC PF13619.6 gi|242399906|ref|YP_002995331.1| - 0.013 15.3 0.0 0.14 12.0 0.0 2.0 1 1 1 2 2 2 0 KTSC domain DUF4258 PF14076.6 gi|242399907|ref|YP_002995332.1| - 4.6e-12 46.1 0.8 6.3e-12 45.7 0.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) BrnT_toxin PF04365.13 gi|242399907|ref|YP_002995332.1| - 0.0059 16.9 0.5 0.0092 16.3 0.5 1.3 1 0 0 1 1 1 1 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system PBECR3 PF18812.1 gi|242399907|ref|YP_002995332.1| - 0.0074 16.2 1.5 0.0087 16.0 1.5 1.1 1 0 0 1 1 1 1 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 Fe-S_biosyn PF01521.20 gi|242399907|ref|YP_002995332.1| - 0.17 12.1 0.3 2.5 8.3 0.1 2.1 2 0 0 2 2 2 0 Iron-sulphur cluster biosynthesis OrfB_IS605 PF01385.19 gi|242399908|ref|YP_002995333.1| - 7.5e-30 103.6 0.7 1.5e-29 102.7 0.0 1.9 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|242399908|ref|YP_002995333.1| - 3.2e-22 78.2 0.0 5.7e-22 77.4 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain MAP65_ASE1 PF03999.12 gi|242399908|ref|YP_002995333.1| - 0.0021 16.8 0.0 0.0033 16.2 0.0 1.2 1 0 0 1 1 1 1 Microtubule associated protein (MAP65/ASE1 family) RuvX PF03652.15 gi|242399908|ref|YP_002995333.1| - 0.0065 16.9 0.1 0.017 15.5 0.1 1.7 1 1 0 1 1 1 1 Holliday junction resolvase RHH_1 PF01402.21 gi|242399909|ref|YP_002995334.1| - 0.053 13.5 0.2 0.098 12.6 0.2 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family NblA PF04485.12 gi|242399910|ref|YP_002995335.1| - 0.073 13.5 0.1 0.089 13.2 0.1 1.1 1 0 0 1 1 1 0 Phycobilisome degradation protein nblA PIN_2 PF10130.9 gi|242399911|ref|YP_002995336.1| - 1e-07 32.2 0.0 1.1e-07 32.1 0.0 1.0 1 0 0 1 1 1 1 PIN domain Class_IIIsignal PF04021.12 gi|242399912|ref|YP_002995337.1| - 2.4e-05 24.2 0.5 3.6e-05 23.6 0.5 1.3 1 0 0 1 1 1 1 Class III signal peptide Class_IIIsignal PF04021.12 gi|242399913|ref|YP_002995338.1| - 1.5e-08 34.4 3.3 2.6e-08 33.6 3.3 1.4 1 0 0 1 1 1 1 Class III signal peptide DUF2275 PF10039.9 gi|242399913|ref|YP_002995338.1| - 0.13 12.4 0.2 0.16 12.0 0.2 1.4 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2275) HTH_11 PF08279.12 gi|242399914|ref|YP_002995339.1| - 4.2e-05 23.4 0.1 0.00024 21.0 0.0 2.3 3 0 0 3 3 3 1 HTH domain UPF0122 PF04297.14 gi|242399914|ref|YP_002995339.1| - 0.0048 17.1 0.2 0.02 15.1 0.0 2.0 2 0 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_7 PF02796.15 gi|242399914|ref|YP_002995339.1| - 0.015 15.4 0.0 0.044 13.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase SpoIIID PF12116.8 gi|242399914|ref|YP_002995339.1| - 0.015 15.3 0.0 3 8.0 0.0 2.4 2 0 0 2 2 2 0 Stage III sporulation protein D HTH_38 PF13936.6 gi|242399914|ref|YP_002995339.1| - 0.023 14.5 0.2 0.27 11.0 0.2 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|242399914|ref|YP_002995339.1| - 0.027 14.5 0.0 0.054 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.6 gi|242399914|ref|YP_002995339.1| - 0.028 14.2 0.0 0.11 12.4 0.0 2.0 1 1 0 1 1 1 0 Homeodomain-like domain HTH_22 PF13309.6 gi|242399914|ref|YP_002995339.1| - 0.031 14.3 0.3 0.16 12.1 0.0 2.3 3 0 0 3 3 3 0 HTH domain HTH_28 PF13518.6 gi|242399914|ref|YP_002995339.1| - 0.04 14.0 0.0 0.079 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HU-CCDC81_euk_2 PF18289.1 gi|242399914|ref|YP_002995339.1| - 0.051 13.7 0.1 2.7 8.2 0.0 2.8 3 0 0 3 3 3 0 CCDC81 eukaryotic HU domain 2 Tubulin PF00091.25 gi|242399914|ref|YP_002995339.1| - 0.073 13.3 0.0 0.099 12.8 0.0 1.2 1 0 0 1 1 1 0 Tubulin/FtsZ family, GTPase domain Peptidase_M50 PF02163.22 gi|242399915|ref|YP_002995340.1| - 2.2e-09 37.0 9.9 1.7e-06 27.5 0.3 2.7 1 1 1 2 2 2 2 Peptidase family M50 Zn-ribbon_8 PF09723.10 gi|242399915|ref|YP_002995340.1| - 0.00014 21.9 0.7 0.00022 21.3 0.7 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf-IS66 PF13005.7 gi|242399915|ref|YP_002995340.1| - 0.045 14.1 2.1 0.1 13.0 0.4 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF1272 PF06906.11 gi|242399915|ref|YP_002995340.1| - 0.089 12.9 0.4 0.16 12.1 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-C4_Topoisom PF01396.19 gi|242399915|ref|YP_002995340.1| - 0.097 12.5 0.3 0.18 11.6 0.3 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf_Rg PF17915.1 gi|242399915|ref|YP_002995340.1| - 0.11 11.9 0.1 0.22 10.9 0.1 1.4 1 0 0 1 1 1 0 Reverse gyrase zinc finger HypA PF01155.19 gi|242399915|ref|YP_002995340.1| - 0.11 12.5 0.2 0.2 11.7 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2072 PF09845.9 gi|242399915|ref|YP_002995340.1| - 0.14 12.4 0.1 0.22 11.8 0.1 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein TFIIS_C PF01096.18 gi|242399915|ref|YP_002995340.1| - 0.33 10.8 1.4 12 5.8 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.10 gi|242399915|ref|YP_002995340.1| - 0.53 10.1 2.4 5.3 6.9 2.2 2.1 1 1 1 2 2 2 0 A2L zinc ribbon domain DUF126 PF01989.16 gi|242399916|ref|YP_002995341.1| - 1.8e-35 120.6 0.4 1.8e-35 120.6 0.4 1.7 3 0 0 3 3 3 1 Aconitase X swivel domain DDR_swiveling PF18427.1 gi|242399916|ref|YP_002995341.1| - 0.0085 16.1 1.0 0.0099 15.9 1.0 1.1 1 0 0 1 1 1 1 DD-reactivating factor swiveling domain GATase_2 PF00310.21 gi|242399916|ref|YP_002995341.1| - 0.069 11.8 0.1 0.081 11.6 0.1 1.1 1 0 0 1 1 1 0 Glutamine amidotransferases class-II DUF521 PF04412.13 gi|242399917|ref|YP_002995342.1| - 3e-146 487.3 0.0 3.4e-146 487.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) HTH_40 PF14493.6 gi|242399917|ref|YP_002995342.1| - 0.22 12.0 2.1 0.59 10.6 0.1 2.7 4 0 0 4 4 4 0 Helix-turn-helix domain LAGLIDADG_3 PF14528.6 gi|242399919|ref|YP_002995344.1| - 2.4e-24 85.5 0.5 7.1e-13 48.7 0.1 2.5 2 0 0 2 2 2 2 LAGLIDADG-like domain LAGLIDADG_WhiA PF14527.6 gi|242399919|ref|YP_002995344.1| - 3e-06 27.2 0.1 0.0003 20.8 0.0 2.9 2 1 1 3 3 3 1 WhiA LAGLIDADG-like domain Hom_end PF05204.14 gi|242399919|ref|YP_002995344.1| - 0.0025 18.0 0.0 0.25 11.5 0.0 2.5 2 0 0 2 2 2 1 Homing endonuclease HTH_7 PF02796.15 gi|242399919|ref|YP_002995344.1| - 0.0049 16.9 0.3 0.017 15.2 0.3 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain of resolvase LAGLIDADG_2 PF03161.13 gi|242399919|ref|YP_002995344.1| - 0.034 14.2 0.6 1.1 9.2 0.0 2.6 2 1 1 3 3 3 0 LAGLIDADG DNA endonuclease family HTH_33 PF13592.6 gi|242399919|ref|YP_002995344.1| - 0.052 13.2 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.6 gi|242399919|ref|YP_002995344.1| - 0.055 13.6 0.0 0.33 11.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain 2_5_RNA_ligase2 PF13563.6 gi|242399921|ref|YP_002995346.1| - 1.9e-14 53.8 0.0 3.3e-14 53.0 0.0 1.4 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily Metallophos PF00149.28 gi|242399921|ref|YP_002995346.1| - 5.9e-07 30.2 3.1 1.4e-06 29.0 3.1 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|242399921|ref|YP_002995346.1| - 2.6e-06 27.7 0.0 4.9e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DapH_N PF08503.10 gi|242399921|ref|YP_002995346.1| - 0.37 11.0 3.7 0.98 9.7 1.0 2.8 2 0 0 2 2 2 0 Tetrahydrodipicolinate succinyltransferase N-terminal PfkB PF00294.24 gi|242399922|ref|YP_002995347.1| - 4.9e-43 147.6 0.0 5.9e-43 147.3 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|242399922|ref|YP_002995347.1| - 1e-09 38.2 0.0 2.1e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DUF2118 PF09891.9 gi|242399924|ref|YP_002995349.1| - 9.6e-46 155.5 2.4 1.1e-45 155.3 2.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) Biotin_lipoyl PF00364.22 gi|242399924|ref|YP_002995349.1| - 0.037 13.8 0.1 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Biotin-requiring enzyme YjzC PF14168.6 gi|242399924|ref|YP_002995349.1| - 0.15 12.4 0.1 0.84 10.0 0.0 2.1 2 0 0 2 2 2 0 YjzC-like protein FKBP_C PF00254.28 gi|242399927|ref|YP_002995352.1| - 3.9e-22 78.4 0.0 6.3e-22 77.7 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase T2SSF PF00482.23 gi|242399928|ref|YP_002995353.1| - 4.3e-16 59.0 1.5 4.3e-16 59.0 1.5 3.0 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F DHFR_1 PF00186.19 gi|242399928|ref|YP_002995353.1| - 0.065 12.9 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Dihydrofolate reductase Peptidase_M50B PF13398.6 gi|242399928|ref|YP_002995353.1| - 1.1 8.8 14.0 1.9 8.1 1.4 2.4 2 1 0 2 2 2 0 Peptidase M50B-like T2SSF PF00482.23 gi|242399929|ref|YP_002995354.1| - 9e-23 80.6 1.0 9e-23 80.6 1.0 3.1 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|242399929|ref|YP_002995354.1| - 6.6e-05 21.9 4.6 0.017 13.9 0.3 2.0 2 0 0 2 2 2 2 Predicted membrane protein (DUF2207) Cgr1 PF03879.14 gi|242399929|ref|YP_002995354.1| - 0.31 11.4 9.4 1.5 9.2 8.7 2.0 2 0 0 2 2 2 0 Cgr1 family RED_N PF07808.13 gi|242399929|ref|YP_002995354.1| - 0.43 10.1 3.3 19 4.8 2.3 2.1 2 0 0 2 2 2 0 RED-like protein N-terminal region T2SSE PF00437.20 gi|242399930|ref|YP_002995355.1| - 6.1e-55 186.2 0.0 1.2e-51 175.4 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein Intein_splicing PF14890.6 gi|242399930|ref|YP_002995355.1| - 1.3e-22 80.2 0.0 4.7e-22 78.4 0.0 2.0 1 1 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|242399930|ref|YP_002995355.1| - 1e-19 70.6 0.1 1.8e-16 60.2 0.0 2.8 2 0 0 2 2 2 2 LAGLIDADG-like domain Hom_end PF05204.14 gi|242399930|ref|YP_002995355.1| - 3.4e-06 27.2 0.0 3.5e-05 23.9 0.0 2.4 2 0 0 2 2 2 1 Homing endonuclease FtsK_SpoIIIE PF01580.18 gi|242399930|ref|YP_002995355.1| - 0.00011 21.7 1.0 0.00031 20.2 0.2 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family DEAD PF00270.29 gi|242399930|ref|YP_002995355.1| - 0.00087 19.1 0.1 1.8 8.3 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase HTH_31 PF13560.6 gi|242399930|ref|YP_002995355.1| - 0.0014 18.9 0.6 0.0063 16.8 0.3 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Zeta_toxin PF06414.12 gi|242399930|ref|YP_002995355.1| - 0.0024 17.2 0.0 0.0057 16.0 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.6 gi|242399930|ref|YP_002995355.1| - 0.0054 16.5 0.1 0.013 15.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|242399930|ref|YP_002995355.1| - 0.015 15.8 0.0 0.049 14.2 0.0 1.8 1 0 0 1 1 1 0 ABC transporter PT-HINT PF07591.11 gi|242399930|ref|YP_002995355.1| - 0.016 15.5 0.1 0.79 10.0 0.0 2.4 2 0 0 2 2 2 0 Pretoxin HINT domain LAGLIDADG_WhiA PF14527.6 gi|242399930|ref|YP_002995355.1| - 0.026 14.6 0.1 8.5 6.5 0.0 2.8 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain HTH_19 PF12844.7 gi|242399930|ref|YP_002995355.1| - 0.026 14.5 0.2 0.74 9.9 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain AAA_16 PF13191.6 gi|242399930|ref|YP_002995355.1| - 0.078 13.4 0.0 0.21 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|242399930|ref|YP_002995355.1| - 0.084 13.2 0.2 0.23 11.8 0.2 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|242399930|ref|YP_002995355.1| - 0.12 12.6 0.1 0.27 11.5 0.1 1.6 1 0 0 1 1 1 0 AAA domain DUF5427 PF10310.9 gi|242399930|ref|YP_002995355.1| - 0.13 11.2 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5427) DUF515 PF04415.12 gi|242399932|ref|YP_002995357.1| - 3.6e-132 441.0 25.0 4.2e-132 440.8 25.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF515) Insulin_TMD PF17870.1 gi|242399932|ref|YP_002995357.1| - 0.027 14.5 0.3 0.084 13.0 0.3 1.8 1 0 0 1 1 1 0 Insulin receptor trans-membrane segment DUF4330 PF14221.6 gi|242399932|ref|YP_002995357.1| - 0.034 14.3 1.0 0.034 14.3 1.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4330) RcpC PF16976.5 gi|242399932|ref|YP_002995357.1| - 0.35 10.9 8.5 0.047 13.7 1.4 2.9 3 1 0 3 3 3 0 Flp pilus assembly protein RcpC/CpaB GA-like PF17573.2 gi|242399932|ref|YP_002995357.1| - 0.79 9.7 8.6 0.97 9.4 0.1 3.7 3 0 0 3 3 3 0 GA-like domain GA PF01468.17 gi|242399932|ref|YP_002995357.1| - 2.8 8.3 12.5 3.1 8.1 2.2 3.2 3 1 0 3 3 3 0 GA module Ferlin_C PF16165.5 gi|242399932|ref|YP_002995357.1| - 4.8 7.1 7.9 0.087 12.8 0.5 1.9 2 0 0 2 2 2 0 Ferlin C-terminus NAD_binding_6 PF08030.12 gi|242399932|ref|YP_002995357.1| - 5.9 7.0 7.2 0.75 9.9 0.7 2.3 2 1 0 2 2 2 0 Ferric reductase NAD binding domain MMR_HSR1 PF01926.23 gi|242399934|ref|YP_002995359.1| - 5.3e-16 58.7 0.6 9.2e-13 48.3 0.0 2.6 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|242399934|ref|YP_002995359.1| - 2.7e-11 43.2 0.8 1.6e-06 27.7 0.1 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|242399934|ref|YP_002995359.1| - 9.3e-11 41.9 0.3 3.2e-10 40.2 0.3 1.8 1 1 0 1 1 1 1 RsgA GTPase GTP_EFTU PF00009.27 gi|242399934|ref|YP_002995359.1| - 3.6e-06 26.7 0.6 9e-05 22.1 0.5 2.8 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|242399934|ref|YP_002995359.1| - 1.8e-05 24.9 0.7 0.46 10.5 0.1 3.2 2 1 1 3 3 3 2 Dynamin family Arf PF00025.21 gi|242399934|ref|YP_002995359.1| - 0.00011 21.7 1.5 0.0039 16.7 0.1 2.4 1 1 1 2 2 2 1 ADP-ribosylation factor family Roc PF08477.13 gi|242399934|ref|YP_002995359.1| - 0.016 15.4 2.1 0.41 10.9 0.2 3.0 2 1 1 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 gi|242399934|ref|YP_002995359.1| - 0.017 15.1 0.1 0.05 13.6 0.1 1.7 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Thioredoxin_6 PF13848.6 gi|242399934|ref|YP_002995359.1| - 0.033 14.1 0.2 0.083 12.8 0.1 1.8 2 0 0 2 2 2 0 Thioredoxin-like domain AIG1 PF04548.16 gi|242399934|ref|YP_002995359.1| - 0.056 12.8 0.1 0.14 11.4 0.1 1.7 1 0 0 1 1 1 0 AIG1 family Ras PF00071.22 gi|242399934|ref|YP_002995359.1| - 0.07 12.7 1.4 3.4 7.2 0.3 2.3 2 0 0 2 2 2 0 Ras family AAA_18 PF13238.6 gi|242399934|ref|YP_002995359.1| - 0.082 13.5 0.3 0.31 11.6 0.0 2.2 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|242399934|ref|YP_002995359.1| - 0.12 12.0 2.0 0.97 9.0 0.2 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain UPF0020 PF01170.18 gi|242399935|ref|YP_002995360.1| - 2.1e-40 138.5 0.0 4.4e-39 134.2 0.0 2.3 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|242399935|ref|YP_002995360.1| - 1.2e-24 87.1 1.8 1.2e-24 87.1 1.8 1.5 2 0 0 2 2 2 1 THUMP domain Methyltransf_31 PF13847.6 gi|242399935|ref|YP_002995360.1| - 7.4e-09 35.6 0.0 2.1e-08 34.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|242399935|ref|YP_002995360.1| - 1.1e-08 35.7 0.0 4.4e-08 33.7 0.0 2.1 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|242399935|ref|YP_002995360.1| - 2.3e-07 30.6 0.1 5.2e-07 29.4 0.0 1.6 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|242399935|ref|YP_002995360.1| - 1.6e-06 27.6 0.0 2.7e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_11 PF08241.12 gi|242399935|ref|YP_002995360.1| - 5.7e-06 26.9 0.0 1.8e-05 25.3 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|242399935|ref|YP_002995360.1| - 1e-05 25.3 0.0 4.8e-05 23.2 0.0 1.8 2 1 0 2 2 2 1 DNA methylase Methyltransf_4 PF02390.17 gi|242399935|ref|YP_002995360.1| - 0.00021 20.8 0.0 0.00041 19.9 0.0 1.5 1 1 0 1 1 1 1 Putative methyltransferase MTS PF05175.14 gi|242399935|ref|YP_002995360.1| - 0.00043 19.9 0.0 0.00071 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|242399935|ref|YP_002995360.1| - 0.00077 19.1 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|242399935|ref|YP_002995360.1| - 0.0032 16.9 0.1 0.017 14.4 0.0 1.9 1 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family AviRa PF11599.8 gi|242399935|ref|YP_002995360.1| - 0.0041 16.6 0.0 0.18 11.3 0.0 2.3 1 1 1 2 2 2 1 RRNA methyltransferase AviRa MtmB PF05369.12 gi|242399935|ref|YP_002995360.1| - 0.013 14.3 0.0 0.025 13.4 0.0 1.6 1 1 0 1 1 1 0 Monomethylamine methyltransferase MtmB Methyltransf_23 PF13489.6 gi|242399935|ref|YP_002995360.1| - 0.053 13.4 0.0 1.9 8.3 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain FAA_hydrolase PF01557.18 gi|242399936|ref|YP_002995361.1| - 1.4e-68 230.9 0.0 1.5e-68 230.7 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family KH_2 PF07650.17 gi|242399936|ref|YP_002995361.1| - 0.062 13.1 0.1 0.15 11.9 0.1 1.6 1 0 0 1 1 1 0 KH domain tRNA-synt_1b PF00579.25 gi|242399937|ref|YP_002995362.1| - 5.8e-24 84.9 0.0 8e-24 84.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) ssDBP_DBD PF18361.1 gi|242399937|ref|YP_002995362.1| - 0.059 13.5 0.1 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 Single stranded DNA-binding protein ss DNA binding domain Aromatic_hydrox PF11723.8 gi|242399937|ref|YP_002995362.1| - 0.062 12.8 0.0 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 Homotrimeric ring hydroxylase Succ_CoA_lig PF13607.6 gi|242399938|ref|YP_002995363.1| - 7.1e-60 200.8 4.5 3.2e-58 195.4 0.9 3.7 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|242399938|ref|YP_002995363.1| - 5.6e-27 94.5 1.1 6.9e-25 87.8 0.2 2.9 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|242399938|ref|YP_002995363.1| - 1.2e-17 64.3 2.3 1.1e-16 61.3 0.9 2.5 2 0 0 2 2 2 1 CoA binding domain Hydrolase_6 PF13344.6 gi|242399938|ref|YP_002995363.1| - 0.0085 16.2 0.0 0.95 9.6 0.0 3.0 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase F420_oxidored PF03807.17 gi|242399938|ref|YP_002995363.1| - 0.058 14.0 0.6 0.058 14.0 0.6 3.2 3 2 1 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent DUF4849 PF16141.5 gi|242399938|ref|YP_002995363.1| - 0.079 12.2 0.1 0.95 8.7 0.0 2.2 2 0 0 2 2 2 0 Putative glycoside hydrolase Family 18, chitinase_18 GTP_CH_N PF12471.8 gi|242399938|ref|YP_002995363.1| - 0.082 12.7 0.0 0.27 11.0 0.1 1.8 2 0 0 2 2 2 0 GTP cyclohydrolase N terminal Hpr_kinase_N PF02603.16 gi|242399938|ref|YP_002995363.1| - 0.13 12.3 0.0 1 9.4 0.0 2.4 3 0 0 3 3 3 0 HPr Serine kinase N terminus HTH_5 PF01022.20 gi|242399939|ref|YP_002995364.1| - 2.5e-15 56.1 0.2 7.2e-15 54.6 0.2 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|242399939|ref|YP_002995364.1| - 3.8e-15 55.7 0.0 1.7e-14 53.6 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|242399939|ref|YP_002995364.1| - 4.3e-08 32.6 0.3 1.1e-07 31.3 0.3 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|242399939|ref|YP_002995364.1| - 3e-07 30.3 0.3 7.9e-07 28.9 0.3 1.8 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|242399939|ref|YP_002995364.1| - 3.5e-06 26.8 0.0 1.6e-05 24.7 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|242399939|ref|YP_002995364.1| - 6e-06 26.1 0.2 1.4e-05 24.9 0.2 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ArsR PF09824.9 gi|242399939|ref|YP_002995364.1| - 3.2e-05 23.6 1.9 0.00017 21.2 1.1 2.3 1 1 0 1 1 1 1 ArsR transcriptional regulator HTH_23 PF13384.6 gi|242399939|ref|YP_002995364.1| - 4.2e-05 23.2 0.0 9.2e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|242399939|ref|YP_002995364.1| - 6.1e-05 23.0 0.0 0.00012 22.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.6 gi|242399939|ref|YP_002995364.1| - 0.00017 21.3 0.1 0.00049 19.8 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|242399939|ref|YP_002995364.1| - 0.0005 20.0 0.4 0.0019 18.1 0.2 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DUF2513 PF10711.9 gi|242399939|ref|YP_002995364.1| - 0.0011 19.2 2.3 0.046 14.0 0.1 2.2 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_IclR PF09339.10 gi|242399939|ref|YP_002995364.1| - 0.0015 18.3 0.0 0.004 16.9 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|242399939|ref|YP_002995364.1| - 0.002 17.8 0.1 0.0054 16.4 0.1 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|242399939|ref|YP_002995364.1| - 0.0037 16.8 0.1 0.011 15.2 0.1 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|242399939|ref|YP_002995364.1| - 0.0071 16.5 0.5 0.027 14.7 0.1 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|242399939|ref|YP_002995364.1| - 0.011 15.8 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|242399939|ref|YP_002995364.1| - 0.015 15.7 1.2 0.058 13.9 1.2 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|242399939|ref|YP_002995364.1| - 0.016 15.0 1.6 0.016 15.0 1.6 2.3 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_27 PF13463.6 gi|242399939|ref|YP_002995364.1| - 0.019 15.4 0.2 0.059 13.9 0.2 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain Isy1 PF06246.12 gi|242399939|ref|YP_002995364.1| - 0.021 14.4 2.8 0.025 14.1 2.8 1.1 1 0 0 1 1 1 0 Isy1-like splicing family MarR PF01047.22 gi|242399939|ref|YP_002995364.1| - 0.021 14.7 0.9 0.59 10.1 0.2 2.3 2 0 0 2 2 2 0 MarR family HTH_17 PF12728.7 gi|242399939|ref|YP_002995364.1| - 0.032 14.4 0.1 0.45 10.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|242399939|ref|YP_002995364.1| - 0.048 13.8 0.2 0.17 12.1 0.1 2.0 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_7 PF02796.15 gi|242399939|ref|YP_002995364.1| - 0.062 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_DeoR PF08220.12 gi|242399939|ref|YP_002995364.1| - 0.16 11.8 1.9 0.21 11.4 0.4 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain DUF4099 PF13351.6 gi|242399939|ref|YP_002995364.1| - 0.31 11.3 5.0 22 5.4 0.0 3.2 2 1 0 3 3 3 0 Protein of unknown function (DUF4099) DUF211 PF02680.14 gi|242399940|ref|YP_002995365.1| - 5.1e-29 100.3 5.2 5.6e-29 100.1 5.2 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.26 gi|242399940|ref|YP_002995365.1| - 0.014 15.8 0.4 0.031 14.7 0.4 1.6 1 0 0 1 1 1 0 Heavy-metal-associated domain Streptin-Immun PF11083.8 gi|242399940|ref|YP_002995365.1| - 0.018 15.4 0.6 0.025 15.0 0.2 1.5 2 0 0 2 2 2 0 Lantibiotic streptin immunity protein BRCT PF00533.26 gi|242399940|ref|YP_002995365.1| - 0.028 14.8 0.0 0.036 14.4 0.0 1.2 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain HTH_5 PF01022.20 gi|242399941|ref|YP_002995366.1| - 3.9e-13 49.0 0.1 8.1e-13 48.0 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|242399941|ref|YP_002995366.1| - 1e-10 41.5 0.0 3e-10 40.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|242399941|ref|YP_002995366.1| - 1.7e-06 27.8 0.0 6.9e-06 25.9 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|242399941|ref|YP_002995366.1| - 1.9e-05 24.5 0.8 0.0017 18.2 0.1 2.8 3 0 0 3 3 3 1 MarR family HTH_IclR PF09339.10 gi|242399941|ref|YP_002995366.1| - 4e-05 23.3 0.0 7.5e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|242399941|ref|YP_002995366.1| - 8e-05 22.5 0.2 0.00032 20.6 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.6 gi|242399941|ref|YP_002995366.1| - 0.00014 22.3 0.5 0.00093 19.6 0.1 2.4 2 1 1 3 3 3 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|242399941|ref|YP_002995366.1| - 0.00017 21.1 0.0 0.0004 19.9 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|242399941|ref|YP_002995366.1| - 0.00069 19.3 0.3 0.0012 18.5 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|242399941|ref|YP_002995366.1| - 0.0011 18.8 0.0 0.0026 17.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|242399941|ref|YP_002995366.1| - 0.0082 16.5 0.0 0.021 15.2 0.0 1.8 1 1 0 1 1 1 1 Transcriptional regulator DUF2513 PF10711.9 gi|242399941|ref|YP_002995366.1| - 0.017 15.4 0.1 0.34 11.2 0.0 2.3 1 1 1 2 2 2 0 Hypothetical protein (DUF2513) RB_A PF01858.17 gi|242399941|ref|YP_002995366.1| - 0.038 13.8 0.3 0.064 13.1 0.3 1.5 1 0 0 1 1 1 0 Retinoblastoma-associated protein A domain Carb_kinase PF01256.17 gi|242399942|ref|YP_002995367.1| - 1.3e-52 178.7 0.0 1.9e-52 178.2 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|242399942|ref|YP_002995367.1| - 1e-33 116.6 0.0 3.4e-33 115.0 0.0 1.8 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|242399942|ref|YP_002995367.1| - 0.00064 19.2 0.0 0.0013 18.2 0.0 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|242399942|ref|YP_002995367.1| - 0.0048 16.3 0.0 0.0087 15.5 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PcrB PF01884.17 gi|242399942|ref|YP_002995367.1| - 0.13 11.7 0.0 0.28 10.6 0.0 1.5 1 0 0 1 1 1 0 PcrB family Amino_oxidase PF01593.24 gi|242399943|ref|YP_002995368.1| - 2.2e-24 86.6 0.0 2.8e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase GDI PF00996.18 gi|242399943|ref|YP_002995368.1| - 1.2e-19 70.2 0.0 4.5e-19 68.3 0.0 1.8 1 1 0 1 1 1 1 GDP dissociation inhibitor NAD_binding_8 PF13450.6 gi|242399943|ref|YP_002995368.1| - 1e-13 51.3 0.1 2.1e-13 50.3 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|242399943|ref|YP_002995368.1| - 1e-10 41.8 0.3 0.00012 21.8 0.0 2.7 2 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|242399943|ref|YP_002995368.1| - 4.8e-08 32.6 0.1 0.0013 18.1 0.0 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|242399943|ref|YP_002995368.1| - 5.2e-08 32.4 0.1 0.0003 20.0 0.0 3.0 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|242399943|ref|YP_002995368.1| - 5.7e-08 31.9 0.1 0.0055 15.5 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.27 gi|242399943|ref|YP_002995368.1| - 3.3e-07 30.8 0.9 0.007 16.9 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|242399943|ref|YP_002995368.1| - 6.8e-06 25.7 0.1 0.00085 18.8 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|242399943|ref|YP_002995368.1| - 3e-05 23.4 0.1 5.2e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|242399943|ref|YP_002995368.1| - 5.8e-05 22.5 0.2 0.00011 21.5 0.2 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|242399943|ref|YP_002995368.1| - 0.0046 17.0 0.1 0.011 15.7 0.0 1.7 2 0 0 2 2 2 1 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|242399943|ref|YP_002995368.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|242399943|ref|YP_002995368.1| - 0.15 11.3 0.4 8.3 5.6 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|242399943|ref|YP_002995368.1| - 0.21 10.6 0.8 0.55 9.2 0.2 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A DUF1206 PF06724.11 gi|242399944|ref|YP_002995369.1| - 0.0063 16.6 1.7 0.0063 16.6 1.7 1.5 2 0 0 2 2 2 1 Domain of Unknown Function (DUF1206) SAYSvFN PF10260.9 gi|242399944|ref|YP_002995369.1| - 0.04 13.8 1.1 2.9 7.9 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized conserved domain (SAYSvFN) DUF2207 PF09972.9 gi|242399944|ref|YP_002995369.1| - 0.16 10.7 0.2 0.16 10.7 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Tetraspanin PF00335.20 gi|242399945|ref|YP_002995370.1| - 0.52 10.0 4.8 0.63 9.7 4.8 1.0 1 0 0 1 1 1 0 Tetraspanin family Oxidored_molyb PF00174.19 gi|242399946|ref|YP_002995371.1| - 1.3e-26 93.3 0.0 2.4e-26 92.4 0.0 1.4 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain PAP2_C PF14360.6 gi|242399948|ref|YP_002995373.1| - 0.038 14.5 1.5 8.2 7.0 0.1 2.1 2 0 0 2 2 2 0 PAP2 superfamily C-terminal ThiW PF09512.10 gi|242399950|ref|YP_002995375.1| - 0.014 15.5 0.3 0.017 15.3 0.3 1.1 1 0 0 1 1 1 0 Thiamine-precursor transporter protein (ThiW) Macro PF01661.21 gi|242399952|ref|YP_002995377.1| - 1.1e-35 122.2 0.1 1.4e-35 121.8 0.1 1.1 1 0 0 1 1 1 1 Macro domain GRDB PF07355.12 gi|242399952|ref|YP_002995377.1| - 0.0031 16.8 0.0 0.0043 16.4 0.0 1.1 1 0 0 1 1 1 1 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) Amidohydro_1 PF01979.20 gi|242399953|ref|YP_002995378.1| - 2.7e-82 276.9 1.0 3.1e-82 276.7 1.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|242399953|ref|YP_002995378.1| - 9.9e-21 74.7 0.4 1.1e-13 51.5 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|242399953|ref|YP_002995378.1| - 0.0077 15.6 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Urease_alpha PF00449.20 gi|242399953|ref|YP_002995378.1| - 0.048 14.0 0.6 0.17 12.2 0.6 2.0 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain DUF5424 PF17462.2 gi|242399953|ref|YP_002995378.1| - 9.4 6.1 8.4 1.3 9.0 1.0 2.8 2 1 1 3 3 3 0 Family of unknown function (DUF5424) PNP_UDP_1 PF01048.20 gi|242399954|ref|YP_002995379.1| - 8.9e-49 165.9 0.0 1.1e-48 165.5 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily ABC2_membrane PF01061.24 gi|242399955|ref|YP_002995380.1| - 6.5e-18 64.9 25.0 1e-17 64.3 25.0 1.2 1 0 0 1 1 1 1 ABC-2 type transporter YbjM PF11045.8 gi|242399955|ref|YP_002995380.1| - 0.00011 22.3 7.1 0.018 15.2 0.1 2.4 2 0 0 2 2 2 2 Putative inner membrane protein of Enterobacteriaceae ABC2_membrane_3 PF12698.7 gi|242399955|ref|YP_002995380.1| - 0.51 9.4 36.4 0.033 13.3 26.9 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein IBV_3C PF03620.13 gi|242399955|ref|YP_002995380.1| - 8.6 6.9 7.6 0.62 10.6 1.7 2.1 3 0 0 3 3 3 0 IBV 3C protein ABC_tran PF00005.27 gi|242399956|ref|YP_002995381.1| - 4.3e-23 82.3 0.0 8.7e-23 81.4 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|242399956|ref|YP_002995381.1| - 2.7e-07 30.7 1.6 0.002 18.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|242399956|ref|YP_002995381.1| - 6.5e-05 23.5 2.2 0.00013 22.6 1.5 1.7 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 gi|242399956|ref|YP_002995381.1| - 0.0032 16.9 0.1 0.059 12.8 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|242399956|ref|YP_002995381.1| - 0.0036 17.0 0.0 0.065 12.9 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|242399956|ref|YP_002995381.1| - 0.0037 17.0 0.5 0.008 15.9 0.5 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|242399956|ref|YP_002995381.1| - 0.0095 16.3 0.0 0.019 15.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|242399956|ref|YP_002995381.1| - 0.011 16.2 0.2 0.065 13.6 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|242399956|ref|YP_002995381.1| - 0.011 16.0 0.1 0.033 14.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|242399956|ref|YP_002995381.1| - 0.012 15.5 0.1 0.026 14.4 0.1 1.6 1 0 0 1 1 1 0 RsgA GTPase ATPase_2 PF01637.18 gi|242399956|ref|YP_002995381.1| - 0.04 13.8 0.4 0.61 9.9 0.0 2.5 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|242399956|ref|YP_002995381.1| - 0.042 13.0 0.4 0.13 11.5 0.4 1.9 1 1 0 1 1 1 0 NB-ARC domain ATP_bind_1 PF03029.17 gi|242399956|ref|YP_002995381.1| - 0.048 13.5 0.0 0.082 12.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|242399956|ref|YP_002995381.1| - 0.061 13.5 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_7 PF12775.7 gi|242399956|ref|YP_002995381.1| - 0.069 12.7 0.1 0.63 9.5 0.1 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region cobW PF02492.19 gi|242399956|ref|YP_002995381.1| - 0.091 12.3 0.1 0.29 10.7 0.1 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|242399956|ref|YP_002995381.1| - 0.097 12.3 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|242399956|ref|YP_002995381.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|242399956|ref|YP_002995381.1| - 0.16 12.2 0.0 0.34 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|242399956|ref|YP_002995381.1| - 0.24 11.1 0.1 0.4 10.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|242399957|ref|YP_002995382.1| - 2e-16 60.8 0.0 4.3e-16 59.7 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|242399957|ref|YP_002995382.1| - 6.2e-11 42.7 2.4 1.6e-10 41.3 0.4 2.5 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain PqqD PF05402.12 gi|242399957|ref|YP_002995382.1| - 1.8e-09 37.7 0.1 6.8e-09 35.9 0.0 2.0 2 0 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) Fer4_12 PF13353.6 gi|242399957|ref|YP_002995382.1| - 0.0084 16.4 0.0 0.23 11.7 0.0 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF4777 PF16007.5 gi|242399957|ref|YP_002995382.1| - 0.017 15.4 0.1 0.038 14.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) S_layer_C PF05124.12 gi|242399959|ref|YP_002995384.1| - 1.3e-11 45.0 1.1 2.9e-11 43.8 0.1 2.0 2 0 0 2 2 2 1 S-layer like family, C-terminal region PurA PF04845.13 gi|242399959|ref|YP_002995384.1| - 0.0079 15.5 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 PurA ssDNA and RNA-binding protein Beta_helix PF13229.6 gi|242399959|ref|YP_002995384.1| - 0.015 15.1 2.3 0.015 15.1 2.3 3.3 1 1 2 3 3 3 0 Right handed beta helix region BRX_N PF13713.6 gi|242399959|ref|YP_002995384.1| - 0.18 11.6 0.1 0.49 10.2 0.1 1.6 1 0 0 1 1 1 0 Transcription factor BRX N-terminal domain PAC2 PF09754.9 gi|242399960|ref|YP_002995385.1| - 5.7e-41 140.9 0.0 6.6e-41 140.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family EMP24_GP25L PF01105.24 gi|242399960|ref|YP_002995385.1| - 0.028 14.3 0.1 0.04 13.8 0.1 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF473 PF04322.12 gi|242399961|ref|YP_002995386.1| - 2.6e-35 120.8 0.5 3.1e-35 120.6 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF473) NucS PF01939.16 gi|242399962|ref|YP_002995387.1| - 2.2e-85 285.7 0.1 2.5e-85 285.5 0.1 1.0 1 0 0 1 1 1 1 Endonuclease NucS DUF4263 PF14082.6 gi|242399962|ref|YP_002995387.1| - 0.016 15.5 0.1 0.15 12.3 0.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4263) MazE_antitoxin PF04014.18 gi|242399962|ref|YP_002995387.1| - 0.06 13.3 1.5 0.2 11.6 0.1 2.5 2 1 1 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin Rad51 PF08423.11 gi|242399963|ref|YP_002995388.1| - 5.9e-86 287.9 0.2 1.2e-70 237.7 0.0 2.1 2 0 0 2 2 2 2 Rad51 Intein_splicing PF14890.6 gi|242399963|ref|YP_002995388.1| - 7.9e-24 84.1 3.9 1.2e-23 83.6 2.6 2.0 2 0 0 2 2 2 1 Intein splicing domain HHH_5 PF14520.6 gi|242399963|ref|YP_002995388.1| - 1.2e-10 41.8 1.4 1.2e-10 41.8 1.4 2.1 2 0 0 2 2 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|242399963|ref|YP_002995388.1| - 3e-07 30.2 0.1 0.011 15.2 0.0 2.4 2 0 0 2 2 2 2 recA bacterial DNA recombination protein ATPase PF06745.13 gi|242399963|ref|YP_002995388.1| - 6.8e-06 25.6 0.2 0.059 12.7 0.3 2.4 2 0 0 2 2 2 2 KaiC Cdd1 PF11731.8 gi|242399963|ref|YP_002995388.1| - 1.4e-05 25.3 0.0 3.7e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.23 gi|242399963|ref|YP_002995388.1| - 1.4e-05 24.7 2.1 0.0062 16.4 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|242399963|ref|YP_002995388.1| - 0.00043 20.3 3.5 0.0014 18.7 0.1 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix motif PT-HINT PF07591.11 gi|242399963|ref|YP_002995388.1| - 0.00074 19.8 0.6 0.0017 18.6 0.6 1.6 1 0 0 1 1 1 1 Pretoxin HINT domain DNA_pol_lambd_f PF10391.9 gi|242399963|ref|YP_002995388.1| - 0.002 17.9 0.0 0.0078 16.0 0.0 2.1 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.8 gi|242399963|ref|YP_002995388.1| - 0.0029 17.8 0.0 0.015 15.6 0.0 2.3 2 0 0 2 2 1 1 IMS family HHH motif AAA_25 PF13481.6 gi|242399963|ref|YP_002995388.1| - 0.0069 16.0 0.1 0.041 13.5 0.1 2.0 2 0 0 2 2 2 1 AAA domain BAF PF02961.14 gi|242399963|ref|YP_002995388.1| - 0.022 15.2 0.1 0.083 13.3 0.0 2.0 2 0 0 2 2 1 0 Barrier to autointegration factor HHH_8 PF14716.6 gi|242399963|ref|YP_002995388.1| - 0.024 15.0 0.6 0.31 11.5 0.1 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix domain PAXNEB PF05625.11 gi|242399963|ref|YP_002995388.1| - 0.22 10.6 0.8 4.2 6.4 0.3 2.1 2 0 0 2 2 2 0 PAXNEB protein TrkA_N PF02254.18 gi|242399964|ref|YP_002995389.1| - 5.5e-18 65.3 0.6 8.7e-18 64.7 0.6 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|242399964|ref|YP_002995389.1| - 1.6e-16 60.0 12.1 3.4e-16 59.0 12.1 1.5 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.31 gi|242399964|ref|YP_002995389.1| - 0.00043 19.6 10.3 0.00088 18.6 10.3 1.5 1 1 0 1 1 1 1 Ion transport protein ABC2_membrane_4 PF12730.7 gi|242399964|ref|YP_002995389.1| - 0.0085 16.1 4.5 0.01 15.8 3.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein NAD_binding_10 PF13460.6 gi|242399964|ref|YP_002995389.1| - 0.018 14.9 0.1 0.027 14.4 0.1 1.2 1 0 0 1 1 1 0 NAD(P)H-binding Castor_Poll_mid PF06241.12 gi|242399964|ref|YP_002995389.1| - 0.024 14.6 0.0 0.28 11.2 0.0 2.2 2 0 0 2 2 2 0 Castor and Pollux, part of voltage-gated ion channel PIN_4 PF13638.6 gi|242399966|ref|YP_002995391.1| - 4.7e-07 30.2 0.5 7.5e-07 29.5 0.5 1.3 1 0 0 1 1 1 1 PIN domain Cas_Cas02710 PF09670.10 gi|242399967|ref|YP_002995392.1| - 1.2e-06 27.6 0.0 1.4e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_DxTHG PF09455.10 gi|242399967|ref|YP_002995392.1| - 0.0045 16.6 0.2 0.0055 16.3 0.2 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family DUF1887 PF09002.11 gi|242399967|ref|YP_002995392.1| - 0.009 14.7 0.0 0.01 14.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) DUF2284 PF10050.9 gi|242399968|ref|YP_002995393.1| - 3e-31 108.4 0.7 3.6e-31 108.1 0.7 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) ADH_N PF08240.12 gi|242399968|ref|YP_002995393.1| - 0.058 13.3 0.2 0.32 10.9 0.0 1.9 2 0 0 2 2 2 0 Alcohol dehydrogenase GroES-like domain adh_short_C2 PF13561.6 gi|242399969|ref|YP_002995394.1| - 7.9e-56 189.2 0.8 9.5e-56 189.0 0.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|242399969|ref|YP_002995394.1| - 2.2e-54 183.9 0.9 2.7e-54 183.6 0.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|242399969|ref|YP_002995394.1| - 2.8e-14 53.5 0.5 9e-14 51.8 0.2 1.7 1 1 1 2 2 2 1 KR domain Epimerase PF01370.21 gi|242399969|ref|YP_002995394.1| - 4.8e-05 22.9 0.4 0.00049 19.6 0.1 2.1 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|242399969|ref|YP_002995394.1| - 0.0007 18.9 0.4 0.0013 18.1 0.4 1.5 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PALP PF00291.25 gi|242399969|ref|YP_002995394.1| - 0.024 14.0 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme 2-Hacid_dh_C PF02826.19 gi|242399969|ref|YP_002995394.1| - 0.071 12.5 2.3 0.11 11.9 0.2 2.2 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PBP PF01161.20 gi|242399970|ref|YP_002995395.1| - 9.9e-32 110.0 0.0 1.2e-31 109.7 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein TPR_12 PF13424.6 gi|242399971|ref|YP_002995396.1| - 0.00063 20.0 0.8 1.4 9.3 0.1 3.7 2 1 2 4 4 4 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|242399971|ref|YP_002995396.1| - 0.0019 18.2 1.6 1.5 9.1 0.1 3.7 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|242399971|ref|YP_002995396.1| - 0.0025 17.6 3.3 0.15 11.9 0.1 3.7 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_21 PF09976.9 gi|242399971|ref|YP_002995396.1| - 0.0096 15.6 0.4 0.013 15.3 0.4 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat-like domain ANAPC3 PF12895.7 gi|242399971|ref|YP_002995396.1| - 0.011 16.0 0.1 3 8.1 0.3 3.0 2 1 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.6 gi|242399971|ref|YP_002995396.1| - 0.012 16.3 0.5 5 8.2 0.0 3.3 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_3 PF07720.12 gi|242399971|ref|YP_002995396.1| - 0.026 14.5 0.1 0.23 11.5 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_19 PF14559.6 gi|242399971|ref|YP_002995396.1| - 0.029 14.9 0.5 2.2 8.9 0.1 2.7 2 1 1 3 3 3 0 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|242399971|ref|YP_002995396.1| - 0.035 14.1 0.5 0.11 12.5 0.2 1.8 1 1 0 1 1 1 0 Putative TPR-like repeat PPR PF01535.20 gi|242399971|ref|YP_002995396.1| - 0.062 13.6 0.0 1.1 9.6 0.0 2.9 3 0 0 3 3 3 0 PPR repeat Clathrin_H_link PF13838.6 gi|242399971|ref|YP_002995396.1| - 0.091 12.7 0.1 5.7 6.9 0.0 3.2 3 1 1 4 4 4 0 Clathrin-H-link LysE PF01810.18 gi|242399973|ref|YP_002995398.1| - 0.041 13.3 14.7 0.05 13.1 14.7 1.1 1 0 0 1 1 1 0 LysE type translocator CBS PF00571.28 gi|242399976|ref|YP_002995401.1| - 1.9e-14 53.8 5.2 5.4e-08 33.2 0.2 2.3 2 0 0 2 2 2 2 CBS domain DHC_N2 PF08393.13 gi|242399976|ref|YP_002995401.1| - 0.1 11.7 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 2 Na_H_Exchanger PF00999.21 gi|242399977|ref|YP_002995402.1| - 3.5e-50 170.9 39.5 4.7e-50 170.5 39.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF308 PF03729.13 gi|242399977|ref|YP_002995402.1| - 0.01 16.1 10.5 0.01 16.1 10.5 3.8 5 1 1 6 6 6 0 Short repeat of unknown function (DUF308) CBP_BcsG PF11658.8 gi|242399977|ref|YP_002995402.1| - 0.52 8.7 1.3 3.2 6.0 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsG PepSY_TM PF03929.16 gi|242399977|ref|YP_002995402.1| - 6.9 6.2 9.2 0.6 9.7 3.7 2.0 2 0 0 2 2 2 0 PepSY-associated TM region Aminotran_3 PF00202.21 gi|242399978|ref|YP_002995403.1| - 2.3e-113 378.9 0.0 2.8e-113 378.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Methyltransf_33 PF10017.9 gi|242399978|ref|YP_002995403.1| - 0.0013 17.9 0.0 0.0024 17.1 0.0 1.3 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent Aminotran_1_2 PF00155.21 gi|242399978|ref|YP_002995403.1| - 0.095 11.9 0.0 0.46 9.6 0.0 1.9 2 0 0 2 2 2 0 Aminotransferase class I and II MFS_1 PF07690.16 gi|242399979|ref|YP_002995404.1| - 1.1e-22 80.5 58.6 8.4e-19 67.7 30.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|242399979|ref|YP_002995404.1| - 1.3e-07 30.9 20.5 2.1e-07 30.1 20.5 1.3 1 0 0 1 1 1 1 MFS_1 like family MFS_2 PF13347.6 gi|242399979|ref|YP_002995404.1| - 0.00048 18.8 6.1 0.00048 18.8 6.1 2.9 1 1 2 3 3 3 2 MFS/sugar transport protein AAA_12 PF13087.6 gi|242399980|ref|YP_002995405.1| - 3.6e-58 196.5 0.0 6.3e-58 195.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|242399980|ref|YP_002995405.1| - 4e-57 194.0 0.1 1.9e-56 191.8 0.2 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|242399980|ref|YP_002995405.1| - 3.6e-12 46.4 0.1 4.4e-07 29.8 0.0 2.8 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|242399980|ref|YP_002995405.1| - 6.5e-08 33.0 0.0 4.8e-07 30.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|242399980|ref|YP_002995405.1| - 1.3e-05 25.1 0.0 0.1 12.3 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 gi|242399980|ref|YP_002995405.1| - 0.0001 21.9 2.3 0.00083 19.0 0.0 2.3 1 1 1 2 2 2 1 UvrD/REP helicase N-terminal domain T2SSE PF00437.20 gi|242399980|ref|YP_002995405.1| - 0.0015 17.7 0.2 0.0046 16.1 0.0 1.9 2 0 0 2 2 2 1 Type II/IV secretion system protein PhoH PF02562.16 gi|242399980|ref|YP_002995405.1| - 0.0039 16.7 0.1 0.3 10.5 0.0 3.1 3 1 1 4 4 4 1 PhoH-like protein Helicase_RecD PF05127.14 gi|242399980|ref|YP_002995405.1| - 0.005 16.7 0.2 0.86 9.4 0.0 2.5 2 0 0 2 2 2 1 Helicase PIF1 PF05970.14 gi|242399980|ref|YP_002995405.1| - 0.0052 16.0 0.0 0.042 13.0 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA_22 PF13401.6 gi|242399980|ref|YP_002995405.1| - 0.011 16.1 0.7 0.16 12.2 0.0 3.1 4 0 0 4 4 4 0 AAA domain ResIII PF04851.15 gi|242399980|ref|YP_002995405.1| - 0.022 14.7 0.4 0.18 11.8 0.4 2.2 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|242399980|ref|YP_002995405.1| - 0.1 12.3 0.0 0.42 10.3 0.0 1.9 1 1 0 1 1 1 0 DEAD/DEAH box helicase UvrD_C_2 PF13538.6 gi|242399980|ref|YP_002995405.1| - 0.12 12.2 0.0 0.35 10.7 0.0 1.8 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain AAA PF00004.29 gi|242399980|ref|YP_002995405.1| - 0.13 12.6 0.1 0.59 10.6 0.0 2.2 3 0 0 3 3 1 0 ATPase family associated with various cellular activities (AAA) UvrD_C PF13361.6 gi|242399980|ref|YP_002995405.1| - 0.58 9.5 3.6 18 4.6 0.1 3.2 2 1 0 3 3 3 0 UvrD-like helicase C-terminal domain Gly-zipper_Omp PF13488.6 gi|242399982|ref|YP_002995407.1| - 4.2e-05 23.5 30.0 0.0056 16.6 3.6 2.6 2 1 0 2 2 2 2 Glycine zipper DUF441 PF04284.13 gi|242399982|ref|YP_002995407.1| - 0.0027 17.7 5.3 0.0029 17.6 5.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF441) Gly-zipper_YMGG PF13441.6 gi|242399982|ref|YP_002995407.1| - 0.22 11.3 37.7 1.6 8.6 21.0 3.0 1 1 2 3 3 3 0 YMGG-like Gly-zipper RseC_MucC PF04246.12 gi|242399982|ref|YP_002995407.1| - 1.6 8.7 5.4 1.5 8.8 0.3 2.1 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC MtrG PF04210.13 gi|242399982|ref|YP_002995407.1| - 2.2 8.2 8.0 0.19 11.6 2.5 2.0 2 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G MscL PF01741.18 gi|242399982|ref|YP_002995407.1| - 4.6 7.6 8.5 2.1 8.7 0.2 2.3 1 1 1 2 2 2 0 Large-conductance mechanosensitive channel, MscL DUF456 PF04306.13 gi|242399982|ref|YP_002995407.1| - 8.2 6.7 19.9 9 6.6 11.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF456) SpoIIM PF01944.17 gi|242399983|ref|YP_002995408.1| - 2.2e-30 105.8 13.9 2.6e-30 105.5 13.9 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M AAA_14 PF13173.6 gi|242399984|ref|YP_002995409.1| - 2.6e-38 131.0 0.2 1e-37 129.1 0.1 2.0 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.6 gi|242399984|ref|YP_002995409.1| - 8.2e-13 48.6 0.1 1.4e-12 47.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|242399984|ref|YP_002995409.1| - 0.00057 19.9 0.3 0.027 14.4 0.1 2.7 2 1 0 3 3 3 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|242399984|ref|YP_002995409.1| - 0.0013 19.1 0.0 0.0098 16.3 0.0 2.2 2 0 0 2 2 2 1 RNA helicase AAA_22 PF13401.6 gi|242399984|ref|YP_002995409.1| - 0.0063 16.8 0.0 0.059 13.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|242399984|ref|YP_002995409.1| - 0.011 15.8 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_35 PF14516.6 gi|242399984|ref|YP_002995409.1| - 0.018 13.9 0.0 0.041 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain AAA_24 PF13479.6 gi|242399984|ref|YP_002995409.1| - 0.033 13.9 0.0 0.19 11.4 0.0 2.2 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|242399984|ref|YP_002995409.1| - 0.11 13.0 0.0 17 6.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain DNA_pack_N PF02500.15 gi|242399984|ref|YP_002995409.1| - 0.15 11.9 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 Probable DNA packing protein, N-terminus BBS2_N PF14781.6 gi|242399984|ref|YP_002995409.1| - 0.2 11.6 0.1 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, N-terminal Epimerase PF01370.21 gi|242399985|ref|YP_002995410.1| - 3.1e-56 190.5 0.0 4.1e-56 190.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|242399985|ref|YP_002995410.1| - 1.4e-51 175.9 0.0 3.9e-51 174.4 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|242399985|ref|YP_002995410.1| - 1.1e-22 80.4 0.0 1.4e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|242399985|ref|YP_002995410.1| - 1.6e-16 60.2 0.0 2.1e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|242399985|ref|YP_002995410.1| - 9.8e-16 57.7 0.0 7.2e-15 54.9 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|242399985|ref|YP_002995410.1| - 1.3e-13 51.3 0.0 1.8e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|242399985|ref|YP_002995410.1| - 1.9e-12 46.9 0.1 3e-10 39.7 0.1 2.6 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|242399985|ref|YP_002995410.1| - 2.3e-10 40.4 0.0 1.2e-07 31.5 0.0 2.2 2 0 0 2 2 2 2 NmrA-like family adh_short PF00106.25 gi|242399985|ref|YP_002995410.1| - 5.6e-07 29.2 0.1 8.3e-06 25.4 0.0 2.4 3 0 0 3 3 3 1 short chain dehydrogenase KR PF08659.10 gi|242399985|ref|YP_002995410.1| - 0.011 15.6 0.3 0.13 12.2 0.3 2.2 1 1 0 1 1 1 0 KR domain TrkA_N PF02254.18 gi|242399985|ref|YP_002995410.1| - 0.058 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Polbeta PF18765.1 gi|242399986|ref|YP_002995411.1| - 5.5e-17 61.6 0.0 7.2e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|242399986|ref|YP_002995411.1| - 0.0024 18.1 0.1 0.0037 17.5 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain NTP_transf_6 PF06042.11 gi|242399986|ref|YP_002995411.1| - 0.17 11.7 0.0 0.21 11.4 0.0 1.1 1 0 0 1 1 1 0 Nucleotidyltransferase DUF86 PF01934.17 gi|242399987|ref|YP_002995412.1| - 1.6e-32 111.8 1.9 2e-32 111.6 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTase_sub_bind PF08780.11 gi|242399987|ref|YP_002995412.1| - 0.00038 20.4 1.5 0.00068 19.6 1.5 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase substrate binding protein like NTP_transferase PF00483.23 gi|242399988|ref|YP_002995413.1| - 8.2e-40 136.9 0.0 9.9e-40 136.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|242399988|ref|YP_002995413.1| - 9.8e-10 39.0 0.0 1.3e-09 38.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|242399988|ref|YP_002995413.1| - 6.4e-05 22.5 4.7 0.00093 18.8 1.6 3.3 3 1 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|242399988|ref|YP_002995413.1| - 0.0077 15.2 0.0 0.03 13.3 0.0 1.9 2 0 0 2 2 2 1 L-fucokinase Trans_coact PF16805.5 gi|242399988|ref|YP_002995413.1| - 0.055 13.6 2.1 0.14 12.2 0.3 2.3 2 0 0 2 2 2 0 Phage late-transcription coactivator Polysacc_synt PF01943.17 gi|242399989|ref|YP_002995414.1| - 1.9e-28 99.6 17.5 1.9e-28 99.6 17.5 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|242399989|ref|YP_002995414.1| - 9.9e-17 61.3 6.7 9.9e-17 61.3 6.7 4.9 2 1 3 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|242399989|ref|YP_002995414.1| - 5.2e-14 52.2 10.2 5.2e-14 52.2 10.2 2.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|242399989|ref|YP_002995414.1| - 6.9e-06 24.9 11.1 6.9e-06 24.9 11.1 2.2 1 1 0 2 2 2 1 Lipid II flippase MurJ MatE PF01554.18 gi|242399989|ref|YP_002995414.1| - 0.0001 22.0 8.8 0.0001 22.0 8.8 3.0 3 1 0 3 3 3 1 MatE IspD PF01128.19 gi|242399990|ref|YP_002995415.1| - 7.9e-50 169.6 0.0 1.2e-49 169.1 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase adh_short PF00106.25 gi|242399990|ref|YP_002995415.1| - 3.5e-27 95.2 1.7 1.4e-23 83.3 0.1 2.2 1 1 1 2 2 2 2 short chain dehydrogenase adh_short_C2 PF13561.6 gi|242399990|ref|YP_002995415.1| - 5.3e-22 78.5 0.0 9.2e-22 77.7 0.0 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NTP_transf_3 PF12804.7 gi|242399990|ref|YP_002995415.1| - 2e-10 41.2 0.0 4.7e-10 40.1 0.0 1.6 1 1 0 1 1 1 1 MobA-like NTP transferase domain KR PF08659.10 gi|242399990|ref|YP_002995415.1| - 1.4e-05 25.1 0.0 0.00033 20.6 0.0 2.3 1 1 1 2 2 2 1 KR domain NTP_transferase PF00483.23 gi|242399990|ref|YP_002995415.1| - 0.00032 20.3 0.0 0.00055 19.6 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase RmlD_sub_bind PF04321.17 gi|242399990|ref|YP_002995415.1| - 0.013 14.6 0.0 0.021 14.0 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain 2-Hacid_dh_C PF02826.19 gi|242399990|ref|YP_002995415.1| - 0.089 12.1 0.8 0.36 10.2 0.0 2.2 2 1 1 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glyphos_transf PF04464.14 gi|242399991|ref|YP_002995416.1| - 8.9e-84 281.6 0.1 1.1e-83 281.2 0.1 1.1 1 0 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Pas_Saposin PF09016.10 gi|242399991|ref|YP_002995416.1| - 0.17 12.3 0.0 0.35 11.2 0.0 1.4 1 0 0 1 1 1 0 Pas factor saposin fold Glycos_transf_1 PF00534.20 gi|242399992|ref|YP_002995417.1| - 1.6e-37 128.7 0.0 2.5e-37 128.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|242399992|ref|YP_002995417.1| - 3.8e-27 95.3 0.0 7.3e-27 94.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|242399992|ref|YP_002995417.1| - 1.6e-21 77.0 0.0 2.3e-21 76.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|242399992|ref|YP_002995417.1| - 1.9e-12 47.9 0.0 2.6e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|242399992|ref|YP_002995417.1| - 1.2e-09 38.3 0.0 2.7e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|242399992|ref|YP_002995417.1| - 3.5e-06 27.3 0.0 1.1e-05 25.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|242399992|ref|YP_002995417.1| - 0.017 14.9 0.1 0.054 13.2 0.1 1.8 1 1 0 1 1 1 0 Starch synthase catalytic domain DUF3492 PF11997.8 gi|242399992|ref|YP_002995417.1| - 0.11 12.2 0.0 0.36 10.5 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3492) Glyco_trans_4_2 PF13477.6 gi|242399993|ref|YP_002995418.1| - 0.00019 21.4 0.0 0.0002 21.4 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|242399993|ref|YP_002995418.1| - 0.031 14.7 0.0 0.033 14.6 0.0 1.0 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Asn_synthase PF00733.21 gi|242399994|ref|YP_002995419.1| - 4.9e-74 250.1 0.0 7.2e-74 249.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|242399994|ref|YP_002995419.1| - 6.7e-47 158.4 0.0 1e-46 157.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|242399994|ref|YP_002995419.1| - 9.2e-44 148.9 0.0 1.4e-43 148.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|242399994|ref|YP_002995419.1| - 0.00034 20.1 0.1 0.0012 18.4 0.1 1.8 1 1 0 1 1 1 1 Aluminium induced protein NAD_synthase PF02540.17 gi|242399994|ref|YP_002995419.1| - 0.064 12.4 0.0 0.098 11.8 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Epimerase_2 PF02350.19 gi|242399995|ref|YP_002995420.1| - 1.4e-118 395.8 0.0 1.6e-118 395.6 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.6 gi|242399995|ref|YP_002995420.1| - 0.012 15.7 0.0 0.022 14.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|242399996|ref|YP_002995421.1| - 1.1e-17 64.5 0.0 1.6e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|242399996|ref|YP_002995421.1| - 4e-14 53.3 0.0 6e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|242399996|ref|YP_002995421.1| - 4.7e-12 46.1 0.1 1.1e-11 44.9 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.6 gi|242399996|ref|YP_002995421.1| - 4e-05 24.1 0.0 7.8e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|242399996|ref|YP_002995421.1| - 0.00016 21.4 0.3 0.0032 17.2 0.3 2.5 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|242399996|ref|YP_002995421.1| - 0.0039 17.5 0.0 0.01 16.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|242399996|ref|YP_002995421.1| - 0.039 13.5 0.1 0.11 12.0 0.1 1.8 1 1 0 1 1 1 0 Glycosyl transferases group 1 Ssu72 PF04722.13 gi|242399996|ref|YP_002995421.1| - 0.073 12.6 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 Ssu72-like protein Glycos_transf_2 PF00535.26 gi|242399997|ref|YP_002995422.1| - 4.6e-25 88.4 0.0 6.2e-25 88.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|242399997|ref|YP_002995422.1| - 1.6e-17 64.2 0.0 3.3e-17 63.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|242399997|ref|YP_002995422.1| - 9.6e-09 35.1 0.2 3.1e-08 33.5 0.2 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|242399997|ref|YP_002995422.1| - 2.1e-08 34.3 1.0 4.3e-08 33.3 0.7 1.5 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|242399997|ref|YP_002995422.1| - 0.01 16.3 0.0 0.018 15.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Hexapep PF00132.24 gi|242399998|ref|YP_002995423.1| - 1.7e-23 81.4 16.5 3e-08 33.1 1.6 4.6 4 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|242399998|ref|YP_002995423.1| - 2.4e-16 59.2 16.6 2.6e-10 39.9 5.0 4.0 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase DUF951 PF06107.11 gi|242399998|ref|YP_002995423.1| - 0.0082 16.0 1.9 0.011 15.6 0.5 1.9 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF951) Desulfoferrod_N PF06397.12 gi|242399998|ref|YP_002995423.1| - 0.03 13.9 0.5 0.03 13.9 0.5 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_2 PF13240.6 gi|242399998|ref|YP_002995423.1| - 0.12 12.2 3.4 0.42 10.4 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain Acetyltransf_11 PF13720.6 gi|242399998|ref|YP_002995423.1| - 0.13 12.7 0.0 0.23 11.9 0.0 1.3 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Sgf11 PF08209.11 gi|242399998|ref|YP_002995423.1| - 0.29 10.7 0.2 0.29 10.7 0.2 1.9 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF2613 PF11021.8 gi|242399998|ref|YP_002995423.1| - 0.36 11.0 3.2 0.6 10.3 3.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DUF1922 PF09082.10 gi|242399998|ref|YP_002995423.1| - 4.4 7.7 7.8 4.9 7.5 4.7 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1922) DegT_DnrJ_EryC1 PF01041.17 gi|242399999|ref|YP_002995424.1| - 7.4e-142 472.9 0.0 8.3e-142 472.8 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|242399999|ref|YP_002995424.1| - 1.7e-09 37.4 0.1 2.7e-09 36.7 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|242399999|ref|YP_002995424.1| - 4.2e-08 32.7 0.1 7.5e-08 31.9 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|242399999|ref|YP_002995424.1| - 5.5e-08 32.1 0.1 9.9e-08 31.3 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|242399999|ref|YP_002995424.1| - 0.00079 18.1 0.1 0.0011 17.5 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|242399999|ref|YP_002995424.1| - 0.0015 17.4 0.0 0.0021 16.9 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain SHMT PF00464.19 gi|242399999|ref|YP_002995424.1| - 0.066 11.8 0.0 0.085 11.4 0.0 1.3 1 0 0 1 1 1 0 Serine hydroxymethyltransferase DUF2795 PF11387.8 gi|242399999|ref|YP_002995424.1| - 0.12 12.6 0.0 0.52 10.6 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) HEPN PF05168.14 gi|242400000|ref|YP_002995425.1| - 1.5e-32 112.2 1.3 1.9e-32 111.9 1.3 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|242400001|ref|YP_002995426.1| - 2.1e-11 44.0 0.0 3.3e-11 43.3 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|242400001|ref|YP_002995426.1| - 4.9e-07 29.7 0.0 8.2e-07 29.0 0.0 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|242400001|ref|YP_002995426.1| - 0.00029 21.0 0.0 0.00041 20.5 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase beta palm GFO_IDH_MocA PF01408.22 gi|242400002|ref|YP_002995427.1| - 2.2e-30 105.9 0.9 3.7e-30 105.2 0.9 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|242400002|ref|YP_002995427.1| - 2.7e-06 27.4 0.0 1.7e-05 24.8 0.0 2.1 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|242400002|ref|YP_002995427.1| - 1.4e-05 25.6 0.5 3.6e-05 24.3 0.2 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 gi|242400002|ref|YP_002995427.1| - 4.2e-05 24.2 0.8 0.00011 22.8 0.8 1.8 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|242400002|ref|YP_002995427.1| - 0.00071 20.2 0.4 0.002 18.8 0.4 1.7 1 0 0 1 1 1 1 CoA binding domain NAD_binding_2 PF03446.15 gi|242400002|ref|YP_002995427.1| - 0.007 16.6 3.3 0.026 14.7 0.3 2.5 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|242400002|ref|YP_002995427.1| - 0.018 14.9 1.9 0.07 13.0 1.8 2.0 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|242400002|ref|YP_002995427.1| - 0.02 15.0 0.4 0.02 15.0 0.4 2.6 2 1 1 3 3 3 0 Shikimate / quinate 5-dehydrogenase OCD_Mu_crystall PF02423.15 gi|242400002|ref|YP_002995427.1| - 0.02 13.8 0.5 0.04 12.8 0.3 1.6 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family Semialdhyde_dh PF01118.24 gi|242400002|ref|YP_002995427.1| - 0.033 14.6 0.4 0.071 13.6 0.4 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DrsE PF02635.15 gi|242400002|ref|YP_002995427.1| - 0.079 13.3 0.1 0.16 12.4 0.1 1.5 1 0 0 1 1 1 0 DsrE/DsrF-like family UDPG_MGDP_dh_N PF03721.14 gi|242400003|ref|YP_002995428.1| - 7.5e-41 139.8 0.3 1.3e-40 138.9 0.3 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|242400003|ref|YP_002995428.1| - 2.4e-25 89.0 0.1 1.2e-24 86.7 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|242400003|ref|YP_002995428.1| - 1.5e-21 76.4 0.0 3.4e-21 75.3 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.15 gi|242400003|ref|YP_002995428.1| - 3.7e-10 40.2 0.7 4.8e-09 36.6 0.3 2.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|242400003|ref|YP_002995428.1| - 3.8e-08 33.5 0.2 6.1e-06 26.3 0.1 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|242400003|ref|YP_002995428.1| - 5.1e-06 26.5 0.5 1.5e-05 25.0 0.2 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|242400003|ref|YP_002995428.1| - 1.2e-05 24.8 0.0 0.029 13.7 0.0 2.7 3 1 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|242400003|ref|YP_002995428.1| - 0.00019 21.7 0.3 0.0076 16.5 0.1 3.0 2 1 0 2 2 2 1 TrkA-N domain SRR1 PF07985.12 gi|242400003|ref|YP_002995428.1| - 0.0015 18.5 0.0 0.0042 17.1 0.0 1.7 1 0 0 1 1 1 1 SRR1 ApbA PF02558.16 gi|242400003|ref|YP_002995428.1| - 0.0032 17.1 0.2 0.0081 15.8 0.1 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|242400003|ref|YP_002995428.1| - 0.0057 16.0 0.2 0.014 14.7 0.2 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DpaA_N PF16924.5 gi|242400003|ref|YP_002995428.1| - 0.019 15.1 0.1 6.5 6.9 0.0 3.5 2 1 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain F420_oxidored PF03807.17 gi|242400003|ref|YP_002995428.1| - 0.043 14.4 2.1 0.14 12.8 0.8 2.6 2 1 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent TPMT PF05724.11 gi|242400003|ref|YP_002995428.1| - 0.068 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) adh_short_C2 PF13561.6 gi|242400003|ref|YP_002995428.1| - 0.093 12.3 0.2 0.34 10.4 0.0 1.9 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase DFP PF04127.15 gi|242400003|ref|YP_002995428.1| - 0.13 12.1 0.1 0.31 10.9 0.1 1.6 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Methyltransf_25 PF13649.6 gi|242400003|ref|YP_002995428.1| - 0.17 12.6 0.0 0.41 11.4 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain AAA_14 PF13173.6 gi|242400005|ref|YP_002995430.1| - 2.5e-06 27.5 0.1 5.5e-06 26.4 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|242400005|ref|YP_002995430.1| - 0.021 15.1 0.2 1.5 9.1 0.1 2.5 1 1 1 2 2 2 0 AAA domain AsiA PF09010.10 gi|242400005|ref|YP_002995430.1| - 0.025 14.7 0.1 0.055 13.6 0.1 1.5 1 0 0 1 1 1 0 Anti-Sigma Factor A ResIII PF04851.15 gi|242400005|ref|YP_002995430.1| - 0.04 13.9 0.1 0.098 12.7 0.0 1.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF234 PF03008.14 gi|242400005|ref|YP_002995430.1| - 0.079 13.4 5.0 1.2 9.6 5.0 2.6 1 1 0 1 1 1 0 Archaea bacterial proteins of unknown function AAA PF00004.29 gi|242400005|ref|YP_002995430.1| - 0.13 12.7 0.6 0.32 11.4 0.0 2.0 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.18 gi|242400005|ref|YP_002995430.1| - 0.16 11.7 0.1 0.38 10.4 0.0 1.7 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|242400006|ref|YP_002995431.1| - 2.6e-38 131.0 0.2 4.9e-38 130.1 0.2 1.5 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|242400006|ref|YP_002995431.1| - 2.8e-08 34.0 0.1 5.6e-08 33.0 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_22 PF13401.6 gi|242400006|ref|YP_002995431.1| - 0.00016 22.0 0.0 0.024 14.9 0.0 2.4 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|242400006|ref|YP_002995431.1| - 0.00018 21.5 0.5 0.0014 18.6 0.2 2.2 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|242400006|ref|YP_002995431.1| - 0.0086 16.5 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2487 PF10673.9 gi|242400006|ref|YP_002995431.1| - 0.0087 16.1 0.1 0.1 12.6 0.1 2.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2487) ResIII PF04851.15 gi|242400006|ref|YP_002995431.1| - 0.033 14.2 0.1 0.087 12.8 0.1 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Roc PF08477.13 gi|242400006|ref|YP_002995431.1| - 0.039 14.2 0.3 1.4 9.1 0.1 2.7 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase RNA_helicase PF00910.22 gi|242400006|ref|YP_002995431.1| - 0.1 13.0 0.0 0.25 11.8 0.0 1.7 2 0 0 2 2 2 0 RNA helicase AAA_14 PF13173.6 gi|242400007|ref|YP_002995432.1| - 2.3e-30 105.3 0.0 4.8e-30 104.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|242400007|ref|YP_002995432.1| - 1.6e-13 50.9 0.2 6.1e-13 49.0 0.2 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) T2SSE PF00437.20 gi|242400007|ref|YP_002995432.1| - 0.14 11.2 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein APS_kinase PF01583.20 gi|242400008|ref|YP_002995433.1| - 1.9e-06 27.9 0.1 2.5e-06 27.5 0.1 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase TauE PF01925.19 gi|242400009|ref|YP_002995434.1| - 4e-06 26.7 0.6 4.2e-06 26.6 0.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3784 PF12650.7 gi|242400009|ref|YP_002995434.1| - 0.044 14.0 0.5 0.056 13.7 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3784) AbiEi_1 PF09407.10 gi|242400010|ref|YP_002995435.1| - 3.3e-07 30.7 0.0 2.7e-06 27.8 0.0 2.3 3 0 0 3 3 3 1 AbiEi antitoxin C-terminal domain AbiEi_4 PF13338.6 gi|242400010|ref|YP_002995435.1| - 0.00075 19.6 0.0 0.0019 18.3 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin DUF4348 PF14254.6 gi|242400010|ref|YP_002995435.1| - 0.027 13.9 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4348) CUE PF02845.16 gi|242400010|ref|YP_002995435.1| - 0.076 12.7 0.1 0.26 11.0 0.0 1.8 2 0 0 2 2 2 0 CUE domain Penicillinase_R PF03965.16 gi|242400010|ref|YP_002995435.1| - 0.1 13.0 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor AbiEii PF08843.11 gi|242400011|ref|YP_002995436.1| - 4.5e-08 33.3 0.0 5.7e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system LktC PF06261.11 gi|242400011|ref|YP_002995436.1| - 0.11 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Actinobacillus actinomycetemcomitans leukotoxin activator LktC OrfB_Zn_ribbon PF07282.11 gi|242400012|ref|YP_002995437.1| - 1.4e-25 89.0 0.3 3.9e-25 87.6 0.0 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|242400012|ref|YP_002995437.1| - 3.1e-08 33.9 0.2 3.1e-08 33.9 0.2 2.1 2 0 0 2 2 2 1 Probable transposase Baculo_ME53 PF06061.11 gi|242400012|ref|YP_002995437.1| - 0.02 14.2 0.0 0.037 13.3 0.0 1.4 1 0 0 1 1 1 0 Baculoviridae ME53 C1_1 PF00130.22 gi|242400012|ref|YP_002995437.1| - 0.034 14.0 0.1 0.066 13.1 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|242400012|ref|YP_002995437.1| - 0.047 13.7 0.3 0.084 12.9 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Vps36-NZF-N PF16988.5 gi|242400012|ref|YP_002995437.1| - 0.092 12.2 0.8 0.32 10.4 0.8 1.9 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-ribbon_3 PF13248.6 gi|242400012|ref|YP_002995437.1| - 0.16 11.4 1.5 7.8 6.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Resolvase PF00239.21 gi|242400013|ref|YP_002995438.1| - 2.4e-26 92.6 0.2 3.2e-26 92.2 0.2 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|242400013|ref|YP_002995438.1| - 7.6e-15 54.8 0.4 1.8e-14 53.7 0.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.6 gi|242400013|ref|YP_002995438.1| - 0.00012 22.1 0.1 0.00026 21.0 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|242400013|ref|YP_002995438.1| - 0.00082 19.1 0.1 0.0032 17.2 0.1 2.0 2 0 0 2 2 2 1 Homeodomain-like domain MerR PF00376.23 gi|242400013|ref|YP_002995438.1| - 0.00099 18.8 0.1 0.0017 18.1 0.1 1.4 1 0 0 1 1 1 1 MerR family regulatory protein DUF2797 PF10977.8 gi|242400013|ref|YP_002995438.1| - 0.021 14.7 0.3 0.026 14.4 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2797) Ish1 PF10281.9 gi|242400013|ref|YP_002995438.1| - 0.025 14.9 1.1 13 6.2 0.0 3.3 3 0 0 3 3 3 0 Putative stress-responsive nuclear envelope protein AbiEi_4 PF13338.6 gi|242400013|ref|YP_002995438.1| - 0.027 14.6 0.1 0.1 12.8 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin CRM1_C PF08767.11 gi|242400013|ref|YP_002995438.1| - 0.029 13.5 0.2 0.055 12.6 0.1 1.3 1 1 0 1 1 1 0 CRM1 C terminal DNA_pol3_a_NI PF14480.6 gi|242400013|ref|YP_002995438.1| - 0.057 13.4 0.2 1.6 8.8 0.1 2.5 2 0 0 2 2 2 0 DNA polymerase III polC-type N-terminus I B12-binding PF02310.19 gi|242400013|ref|YP_002995438.1| - 0.085 12.9 0.0 0.27 11.3 0.0 1.8 2 0 0 2 2 2 0 B12 binding domain Sigma70_r4 PF04545.16 gi|242400013|ref|YP_002995438.1| - 0.11 12.0 0.1 16 5.1 0.1 2.5 1 1 1 2 2 2 0 Sigma-70, region 4 AbiEii PF08843.11 gi|242400014|ref|YP_002995439.1| - 5.1e-12 46.3 0.1 6.3e-12 46.0 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system NTP_transferase PF00483.23 gi|242400015|ref|YP_002995440.1| - 1.2e-50 172.4 0.0 1.5e-50 172.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|242400015|ref|YP_002995440.1| - 6.5e-09 36.3 0.0 9.6e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|242400015|ref|YP_002995440.1| - 9.9e-09 34.6 13.9 1.9e-05 24.2 1.3 4.4 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|242400015|ref|YP_002995440.1| - 0.00045 19.3 0.2 0.00065 18.8 0.2 1.1 1 0 0 1 1 1 1 L-fucokinase Hexapep_2 PF14602.6 gi|242400015|ref|YP_002995440.1| - 0.00053 19.7 2.9 0.00053 19.7 2.9 3.3 3 1 0 4 4 4 1 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|242400015|ref|YP_002995440.1| - 0.00088 17.5 0.7 0.0069 14.6 0.6 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4954) CTP_transf_3 PF02348.19 gi|242400015|ref|YP_002995440.1| - 0.031 14.2 0.0 0.045 13.7 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase GGA_N-GAT PF18308.1 gi|242400015|ref|YP_002995440.1| - 0.083 12.5 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 GGA N-GAT domain GDP_Man_Dehyd PF16363.5 gi|242400016|ref|YP_002995441.1| - 8.4e-83 278.5 0.0 1.1e-82 278.2 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|242400016|ref|YP_002995441.1| - 5.2e-63 212.7 0.0 6.3e-63 212.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|242400016|ref|YP_002995441.1| - 1.1e-20 73.8 0.0 1.4e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|242400016|ref|YP_002995441.1| - 4.9e-18 65.2 0.0 1.1e-17 64.1 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|242400016|ref|YP_002995441.1| - 1.9e-12 46.9 0.0 1.1e-10 41.2 0.0 2.6 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|242400016|ref|YP_002995441.1| - 1e-11 44.5 0.0 1.7e-10 40.5 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|242400016|ref|YP_002995441.1| - 5.4e-07 29.7 0.0 8.9e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|242400016|ref|YP_002995441.1| - 0.0044 17.3 0.0 0.0077 16.5 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|242400016|ref|YP_002995441.1| - 0.0063 16.0 0.0 0.025 14.0 0.0 1.8 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|242400016|ref|YP_002995441.1| - 0.0066 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family DUF104 PF01954.16 gi|242400017|ref|YP_002995442.1| - 1.2e-19 70.5 4.4 1.3e-19 70.4 3.0 1.6 1 1 1 2 2 2 1 Protein of unknown function DUF104 Cactin_mid PF10312.9 gi|242400017|ref|YP_002995442.1| - 0.035 13.8 0.1 0.039 13.7 0.1 1.1 1 0 0 1 1 1 0 Conserved mid region of cactin DUF1967 PF09269.11 gi|242400017|ref|YP_002995442.1| - 0.04 13.9 0.1 0.074 13.0 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1967) dTDP_sugar_isom PF00908.17 gi|242400018|ref|YP_002995443.1| - 2.8e-77 258.2 0.0 3.1e-77 258.0 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase RmlD_sub_bind PF04321.17 gi|242400019|ref|YP_002995444.1| - 3.9e-87 292.0 0.0 4.7e-87 291.7 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|242400019|ref|YP_002995444.1| - 8.5e-24 84.3 0.0 1.1e-23 84.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|242400019|ref|YP_002995444.1| - 4.4e-15 55.9 0.2 1.7e-14 54.0 0.0 1.8 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|242400019|ref|YP_002995444.1| - 1e-10 41.2 2.3 8.8e-10 38.2 0.9 2.5 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|242400019|ref|YP_002995444.1| - 4.2e-07 29.4 0.1 1.5e-06 27.5 0.1 2.1 1 1 1 2 2 2 1 Male sterility protein DapB_N PF01113.20 gi|242400019|ref|YP_002995444.1| - 0.00033 20.8 0.1 0.0029 17.7 0.0 2.2 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|242400019|ref|YP_002995444.1| - 0.0025 18.2 0.1 0.01 16.3 0.0 2.1 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain EB_dh PF09459.10 gi|242400019|ref|YP_002995444.1| - 0.14 12.1 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Ethylbenzene dehydrogenase FadR_C PF07840.12 gi|242400019|ref|YP_002995444.1| - 0.16 11.8 0.1 0.29 11.0 0.1 1.3 1 0 0 1 1 1 0 FadR C-terminal domain Polysacc_synt PF01943.17 gi|242400020|ref|YP_002995445.1| - 7.5e-42 143.6 33.4 7.5e-42 143.6 33.4 3.0 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|242400020|ref|YP_002995445.1| - 3.4e-23 82.3 22.4 3.4e-23 82.3 22.4 2.6 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|242400020|ref|YP_002995445.1| - 3.3e-16 59.6 24.5 3.3e-16 59.6 24.5 4.2 3 2 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|242400020|ref|YP_002995445.1| - 0.00014 20.6 49.2 0.00014 20.6 49.2 2.0 1 1 0 1 1 1 1 Lipid II flippase MurJ Glycos_transf_2 PF00535.26 gi|242400021|ref|YP_002995446.1| - 9.4e-37 126.4 0.0 1.4e-36 125.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|242400021|ref|YP_002995446.1| - 8.3e-13 48.4 3.1 4.6e-12 46.0 3.1 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|242400021|ref|YP_002995446.1| - 1e-12 48.5 0.0 1.4e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|242400021|ref|YP_002995446.1| - 0.012 16.1 0.0 0.023 15.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 NTP_transferase PF00483.23 gi|242400021|ref|YP_002995446.1| - 0.036 13.6 0.2 0.14 11.7 0.0 1.8 2 0 0 2 2 2 0 Nucleotidyl transferase Branch_AA_trans PF05525.13 gi|242400021|ref|YP_002995446.1| - 0.09 11.7 0.3 0.12 11.2 0.3 1.1 1 0 0 1 1 1 0 Branched-chain amino acid transport protein Rhamno_transf PF11316.8 gi|242400021|ref|YP_002995446.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.5 1 1 0 1 1 1 0 Putative rhamnosyl transferase DegT_DnrJ_EryC1 PF01041.17 gi|242400022|ref|YP_002995447.1| - 8.3e-139 462.9 0.0 9.4e-139 462.7 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|242400022|ref|YP_002995447.1| - 1e-12 47.9 0.0 2.2e-12 46.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|242400022|ref|YP_002995447.1| - 2.9e-06 26.1 0.0 3.7e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|242400022|ref|YP_002995447.1| - 8.7e-05 21.9 0.0 0.0002 20.7 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|242400022|ref|YP_002995447.1| - 0.00012 21.2 0.0 0.00018 20.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Acetyltransf_6 PF13480.7 gi|242400023|ref|YP_002995448.1| - 1.2e-08 35.2 0.0 1.9e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Glyco_hydro_130 PF04041.13 gi|242400024|ref|YP_002995449.1| - 1.2e-08 34.3 0.9 4.8e-07 29.0 0.4 2.4 1 1 1 2 2 2 2 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_32N PF00251.20 gi|242400024|ref|YP_002995449.1| - 8.5e-07 28.8 0.1 0.032 13.8 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolases family 32 N-terminal domain Hexapep PF00132.24 gi|242400025|ref|YP_002995450.1| - 1.2e-14 53.4 17.4 4e-06 26.3 3.6 3.8 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|242400025|ref|YP_002995450.1| - 2.3e-06 27.2 9.3 0.37 10.6 0.1 4.6 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase PglD_N PF17836.1 gi|242400025|ref|YP_002995450.1| - 0.0011 19.6 0.0 0.0038 17.8 0.0 2.0 2 0 0 2 2 2 1 PglD N-terminal domain Fucokinase PF07959.12 gi|242400025|ref|YP_002995450.1| - 0.18 10.7 0.5 5.4 5.8 0.2 1.9 1 1 1 2 2 2 0 L-fucokinase MazE_antitoxin PF04014.18 gi|242400026|ref|YP_002995451.1| - 1.7e-09 37.4 0.3 3.6e-07 30.0 0.0 2.2 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin AbrB-like PF14250.6 gi|242400026|ref|YP_002995451.1| - 2.9e-09 36.9 0.0 2e-05 24.6 0.0 2.1 1 1 1 2 2 2 2 AbrB-like transcriptional regulator TRAM PF01938.20 gi|242400026|ref|YP_002995451.1| - 0.00012 22.0 0.3 0.45 10.6 0.1 2.2 1 1 1 2 2 2 2 TRAM domain CSD2 PF17876.1 gi|242400026|ref|YP_002995451.1| - 0.00051 20.1 0.2 0.0015 18.6 0.1 1.7 1 1 1 2 2 2 1 Cold shock domain eIF-1a PF01176.19 gi|242400026|ref|YP_002995451.1| - 0.0013 18.5 0.1 0.1 12.4 0.1 2.2 1 1 1 2 2 2 1 Translation initiation factor 1A / IF-1 OB_RNB PF08206.11 gi|242400026|ref|YP_002995451.1| - 0.04 13.6 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Ribonuclease B OB domain CDC48_N PF02359.18 gi|242400026|ref|YP_002995451.1| - 0.078 13.2 0.1 4.2 7.6 0.0 2.1 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain bZIP_1 PF00170.21 gi|242400029|ref|YP_002995454.1| - 2.1e-05 24.5 13.2 0.0007 19.6 7.5 2.7 2 0 0 2 2 2 2 bZIP transcription factor HAP1_N PF04849.13 gi|242400029|ref|YP_002995454.1| - 9.4e-05 21.8 6.0 0.00013 21.3 6.0 1.2 1 0 0 1 1 1 1 HAP1 N-terminal conserved region GAS PF13851.6 gi|242400029|ref|YP_002995454.1| - 0.0014 18.1 9.1 0.0023 17.3 9.1 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding bZIP_2 PF07716.15 gi|242400029|ref|YP_002995454.1| - 0.0025 17.9 6.6 0.0025 17.9 6.6 2.8 3 1 0 3 3 2 1 Basic region leucine zipper Wtap PF17098.5 gi|242400029|ref|YP_002995454.1| - 0.013 15.4 5.8 0.021 14.7 5.8 1.4 1 0 0 1 1 1 0 WTAP/Mum2p family EST1 PF10374.9 gi|242400029|ref|YP_002995454.1| - 0.048 14.3 2.9 0.19 12.4 1.0 2.4 1 1 1 2 2 2 0 Telomerase activating protein Est1 TSC22 PF01166.18 gi|242400029|ref|YP_002995454.1| - 0.048 14.0 12.6 0.36 11.2 5.8 3.7 2 1 1 3 3 3 0 TSC-22/dip/bun family UPF0061 PF02696.14 gi|242400029|ref|YP_002995454.1| - 0.054 12.3 2.3 0.074 11.8 2.3 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, YdiU/UPF0061 family FYRC PF05965.14 gi|242400029|ref|YP_002995454.1| - 0.065 13.4 0.2 0.29 11.3 0.1 2.1 2 0 0 2 2 2 0 F/Y rich C-terminus DUF4988 PF16378.5 gi|242400029|ref|YP_002995454.1| - 0.072 12.8 0.5 0.11 12.1 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF16 PF01519.16 gi|242400029|ref|YP_002995454.1| - 0.083 13.4 5.8 0.21 12.1 5.8 1.8 1 1 0 1 1 1 0 Protein of unknown function DUF16 HTH_20 PF12840.7 gi|242400029|ref|YP_002995454.1| - 0.093 12.8 0.1 0.55 10.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Colicin PF01024.19 gi|242400029|ref|YP_002995454.1| - 0.12 12.2 0.9 0.45 10.4 0.3 2.0 2 0 0 2 2 2 0 Colicin pore forming domain STN1_2 PF09170.10 gi|242400029|ref|YP_002995454.1| - 0.13 12.5 2.3 0.23 11.6 2.0 1.5 1 1 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 SpecificRecomb PF10136.9 gi|242400029|ref|YP_002995454.1| - 0.16 10.2 0.5 0.25 9.6 0.5 1.2 1 0 0 1 1 1 0 Site-specific recombinase Med30 PF11315.8 gi|242400029|ref|YP_002995454.1| - 0.19 12.0 6.8 0.17 12.1 5.1 1.7 2 0 0 2 2 1 0 Mediator complex subunit 30 DctP PF03480.13 gi|242400029|ref|YP_002995454.1| - 0.19 11.0 3.3 0.57 9.5 1.8 2.1 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein, family 7 LMBR1 PF04791.16 gi|242400029|ref|YP_002995454.1| - 0.22 10.4 1.4 0.22 10.4 1.4 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein RUN PF02759.19 gi|242400029|ref|YP_002995454.1| - 0.23 11.4 1.8 0.39 10.7 1.8 1.8 1 1 0 1 1 1 0 RUN domain HxlR PF01638.17 gi|242400029|ref|YP_002995454.1| - 0.24 11.3 3.9 0.57 10.1 0.0 3.0 3 1 0 3 3 2 0 HxlR-like helix-turn-helix Nup88 PF10168.9 gi|242400029|ref|YP_002995454.1| - 0.46 8.2 8.1 0.58 7.9 8.1 1.1 1 0 0 1 1 1 0 Nuclear pore component DUF5320 PF17253.2 gi|242400029|ref|YP_002995454.1| - 0.5 11.5 3.8 0.64 11.1 0.6 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5320) Prefoldin PF02996.17 gi|242400029|ref|YP_002995454.1| - 0.57 10.1 7.6 0.18 11.7 3.5 2.1 1 1 1 2 2 2 0 Prefoldin subunit ATG11 PF10377.9 gi|242400029|ref|YP_002995454.1| - 0.58 10.2 3.4 1.1 9.3 3.1 1.6 1 1 0 1 1 1 0 Autophagy-related protein 11 OmpH PF03938.14 gi|242400029|ref|YP_002995454.1| - 0.66 10.3 10.6 0.54 10.6 9.1 1.6 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) ZapB PF06005.12 gi|242400029|ref|YP_002995454.1| - 0.7 10.4 15.7 2.1 8.8 15.7 1.9 1 1 0 1 1 1 0 Cell division protein ZapB Herpes_BLRF2 PF05812.12 gi|242400029|ref|YP_002995454.1| - 0.72 10.0 6.5 1.6 8.9 6.5 1.6 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein DUF4140 PF13600.6 gi|242400029|ref|YP_002995454.1| - 1.2 9.6 3.5 0.4 11.1 0.5 1.8 2 0 0 2 2 1 0 N-terminal domain of unknown function (DUF4140) FliD_N PF02465.18 gi|242400029|ref|YP_002995454.1| - 1.4 9.7 3.1 7.4 7.3 2.8 2.2 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Uso1_p115_C PF04871.13 gi|242400029|ref|YP_002995454.1| - 1.6 9.1 10.4 2 8.8 8.8 1.9 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region FTO_CTD PF12934.7 gi|242400029|ref|YP_002995454.1| - 1.6 8.5 8.8 9.8 5.9 5.5 2.6 1 1 2 3 3 3 0 FTO C-terminal domain XhlA PF10779.9 gi|242400029|ref|YP_002995454.1| - 1.6 9.0 8.4 0.95 9.7 5.6 2.1 1 1 1 2 2 2 0 Haemolysin XhlA YabA PF06156.13 gi|242400029|ref|YP_002995454.1| - 1.9 9.2 11.4 51 4.6 11.5 2.8 2 1 0 2 2 2 0 Initiation control protein YabA APG6_N PF17675.1 gi|242400029|ref|YP_002995454.1| - 1.9 9.0 14.0 4.5 7.8 14.0 1.6 1 1 0 1 1 1 0 Apg6 coiled-coil region FapA PF03961.13 gi|242400029|ref|YP_002995454.1| - 3.3 6.2 9.6 4.9 5.7 9.6 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A GrpE PF01025.19 gi|242400029|ref|YP_002995454.1| - 4.1 7.0 11.5 11 5.7 11.5 1.6 1 1 0 1 1 1 0 GrpE Atg14 PF10186.9 gi|242400029|ref|YP_002995454.1| - 6.9 5.7 8.0 14 4.6 7.0 1.8 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Glycos_transf_2 PF00535.26 gi|242400030|ref|YP_002995455.1| - 2.6e-21 76.2 1.8 4.6e-10 39.6 0.3 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|242400030|ref|YP_002995455.1| - 4e-14 53.1 0.0 9.8e-07 28.9 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|242400030|ref|YP_002995455.1| - 1.8e-06 28.0 0.0 2.8e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.6 gi|242400030|ref|YP_002995455.1| - 0.00089 19.0 0.2 0.0023 17.6 0.2 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_transf_21 PF13506.6 gi|242400030|ref|YP_002995455.1| - 0.015 14.8 0.0 0.14 11.7 0.0 2.1 1 1 0 1 1 1 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.20 gi|242400032|ref|YP_002995457.1| - 2.3e-39 134.7 0.0 3.7e-39 134.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|242400032|ref|YP_002995457.1| - 8.1e-28 97.5 0.1 1.6e-27 96.6 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|242400032|ref|YP_002995457.1| - 9.5e-18 64.8 0.0 1.5e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|242400032|ref|YP_002995457.1| - 2.5e-10 41.0 0.0 3.7e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|242400032|ref|YP_002995457.1| - 5e-08 33.2 0.0 1.4e-07 31.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|242400032|ref|YP_002995457.1| - 5.3e-08 33.0 0.0 1.4e-07 31.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_sibiricus_MM_739_uid59399/NC_012883.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_sibiricus_MM_739_uid59399/NC_012883.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_sibiricus_MM_739_uid59399/NC_012883.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_sibiricus_MM_739_uid59399/NC_012883.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:13:52 2019 # [ok]