# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- PHP PF02811.19 gi|240102058|ref|YP_002958366.1| - 7.2e-10 39.4 0.0 5.4e-09 36.6 0.0 2.0 1 1 0 1 1 1 1 PHP domain Asn_synthase PF00733.21 gi|240102059|ref|YP_002958367.1| - 1.7e-76 258.2 0.0 2.2e-76 257.9 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|240102059|ref|YP_002958367.1| - 1.3e-47 160.8 0.0 3e-47 159.6 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|240102059|ref|YP_002958367.1| - 1.5e-44 151.5 0.0 2.9e-44 150.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|240102059|ref|YP_002958367.1| - 0.00018 21.1 0.1 0.00036 20.1 0.1 1.5 1 1 0 1 1 1 1 Aluminium induced protein NAD_synthase PF02540.17 gi|240102059|ref|YP_002958367.1| - 0.021 14.0 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 NAD synthase Glycos_transf_1 PF00534.20 gi|240102060|ref|YP_002958368.1| - 6.9e-16 58.2 1.3 1.8e-15 56.9 1.3 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|240102060|ref|YP_002958368.1| - 1.1e-13 51.8 0.0 1.8e-13 51.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|240102060|ref|YP_002958368.1| - 2.8e-11 43.7 1.9 4.5e-11 43.0 1.9 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|240102060|ref|YP_002958368.1| - 4.2e-11 43.1 0.0 7.7e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|240102060|ref|YP_002958368.1| - 1.6e-05 25.4 0.0 2.1e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain PMT_2 PF13231.6 gi|240102061|ref|YP_002958369.1| - 0.00078 19.7 23.5 0.00078 19.7 23.5 4.0 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Polysacc_synt PF01943.17 gi|240102062|ref|YP_002958370.1| - 5.5e-27 94.9 25.6 5.5e-27 94.9 25.6 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|240102062|ref|YP_002958370.1| - 3.5e-15 56.3 5.3 3.5e-15 56.3 5.3 4.4 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|240102062|ref|YP_002958370.1| - 8.9e-13 48.1 18.5 8.9e-13 48.1 18.5 1.8 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|240102062|ref|YP_002958370.1| - 4.4e-10 39.4 8.9 4.4e-10 39.4 8.9 3.8 3 1 1 4 4 4 1 MatE CRPA PF05745.11 gi|240102062|ref|YP_002958370.1| - 0.71 9.9 12.1 0.27 11.2 3.4 2.7 2 1 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) Pox_A14 PF05767.12 gi|240102062|ref|YP_002958370.1| - 5.4 7.2 9.9 6.5 7.0 0.4 3.7 2 1 1 3 3 3 0 Poxvirus virion envelope protein A14 SirB PF04247.12 gi|240102063|ref|YP_002958371.1| - 0.0098 16.0 2.4 0.011 15.8 2.4 1.0 1 0 0 1 1 1 1 Invasion gene expression up-regulator, SirB IncE PF17627.2 gi|240102064|ref|YP_002958372.1| - 0.008 16.2 1.6 0.43 10.6 0.2 2.3 2 0 0 2 2 2 2 Inclusion membrane protein E Big_3_5 PF16640.5 gi|240102065|ref|YP_002958373.1| - 1.1e-08 35.2 4.4 2.5e-07 30.8 0.6 2.9 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 3) Invasin_D3 PF09134.10 gi|240102065|ref|YP_002958373.1| - 5.8e-06 26.5 1.4 0.33 11.3 0.0 3.4 3 0 0 3 3 3 3 Invasin, domain 3 Big_1 PF02369.16 gi|240102065|ref|YP_002958373.1| - 1.7e-05 24.8 5.7 0.03 14.3 0.1 4.1 4 1 0 4 4 4 3 Bacterial Ig-like domain (group 1) DUF4129 PF13559.6 gi|240102065|ref|YP_002958373.1| - 0.0018 18.5 0.0 0.0039 17.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarbopepD_reg_2 PF13715.6 gi|240102065|ref|YP_002958373.1| - 0.026 14.5 0.5 9 6.4 0.0 2.8 2 0 0 2 2 2 0 CarboxypepD_reg-like domain DUF4350 PF14258.6 gi|240102066|ref|YP_002958374.1| - 1.9e-11 44.2 0.0 4.5e-11 43.0 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|240102066|ref|YP_002958374.1| - 0.0019 17.7 0.0 0.0077 15.7 0.0 1.8 1 1 1 2 2 2 1 ABC-type uncharacterized transport system GATase1_like PF07090.11 gi|240102066|ref|YP_002958374.1| - 0.017 14.5 0.0 0.041 13.3 0.0 1.6 1 1 0 1 1 1 0 Putative glutamine amidotransferase AAA_3 PF07726.11 gi|240102067|ref|YP_002958375.1| - 3.1e-61 205.0 0.1 5e-61 204.3 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|240102067|ref|YP_002958375.1| - 2e-19 69.2 0.2 3.3e-19 68.5 0.2 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|240102067|ref|YP_002958375.1| - 1e-15 57.9 0.0 1.9e-15 57.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|240102067|ref|YP_002958375.1| - 2.7e-08 34.3 1.0 7.2e-08 32.9 0.0 2.2 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|240102067|ref|YP_002958375.1| - 3.1e-08 33.0 0.0 5.2e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|240102067|ref|YP_002958375.1| - 1.9e-07 31.0 0.1 1.6e-06 28.0 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|240102067|ref|YP_002958375.1| - 3e-06 26.8 0.2 0.043 13.2 0.0 2.6 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|240102067|ref|YP_002958375.1| - 1.6e-05 24.7 0.0 3.6e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|240102067|ref|YP_002958375.1| - 0.0086 16.2 0.0 0.06 13.5 0.0 2.2 1 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) ATPase PF06745.13 gi|240102067|ref|YP_002958375.1| - 0.068 12.5 0.1 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 KaiC DUF58 PF01882.18 gi|240102068|ref|YP_002958376.1| - 2.4e-17 63.0 0.1 4.1e-17 62.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 SecG PF03840.14 gi|240102068|ref|YP_002958376.1| - 0.13 12.4 0.2 0.25 11.5 0.2 1.4 1 0 0 1 1 1 0 Preprotein translocase SecG subunit PsbN PF02468.15 gi|240102069|ref|YP_002958377.1| - 3.6 7.5 4.9 2.5 8.0 0.2 3.0 2 1 1 3 3 3 0 Photosystem II reaction centre N protein (psbN) Vps55 PF04133.14 gi|240102069|ref|YP_002958377.1| - 6 6.9 10.5 0.27 11.2 1.1 2.6 2 1 0 2 2 2 0 Vacuolar protein sorting 55 Exosortase_EpsH PF09721.10 gi|240102070|ref|YP_002958378.1| - 9.8e-15 54.8 25.3 3e-14 53.2 25.3 1.6 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) CBM53 PF16760.5 gi|240102071|ref|YP_002958379.1| - 7.6e-14 52.1 1.1 2.8e-13 50.3 1.1 2.1 1 0 0 1 1 1 1 Starch/carbohydrate-binding module (family 53) Glyco_hydro_57 PF03065.15 gi|240102071|ref|YP_002958379.1| - 2.7e-12 46.6 0.0 1.2e-11 44.4 0.0 2.1 3 0 0 3 3 3 1 Glycosyl hydrolase family 57 DUF1616 PF07760.11 gi|240102073|ref|YP_002958381.1| - 2.7e-90 302.7 0.0 3.2e-90 302.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF1056 PF06341.11 gi|240102073|ref|YP_002958381.1| - 0.016 15.5 1.6 0.18 12.1 0.8 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1056) Glycos_transf_1 PF00534.20 gi|240102074|ref|YP_002958382.1| - 1.1e-41 142.2 0.1 2.6e-41 141.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|240102074|ref|YP_002958382.1| - 7.2e-33 113.9 0.3 2e-32 112.4 0.2 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|240102074|ref|YP_002958382.1| - 1.8e-24 86.7 1.3 2.7e-24 86.0 1.3 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|240102074|ref|YP_002958382.1| - 4.5e-14 53.2 1.0 7.6e-14 52.5 1.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|240102074|ref|YP_002958382.1| - 5.5e-06 26.7 0.0 9.8e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|240102074|ref|YP_002958382.1| - 0.0065 15.2 0.0 0.0097 14.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 NTP_transferase PF00483.23 gi|240102075|ref|YP_002958383.1| - 1.7e-38 132.6 0.0 2e-38 132.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|240102075|ref|YP_002958383.1| - 2e-11 44.5 0.0 2.4e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|240102075|ref|YP_002958383.1| - 2.4e-06 27.0 0.6 0.0028 17.3 0.4 3.8 2 2 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|240102075|ref|YP_002958383.1| - 0.12 11.3 0.0 3.4 6.5 0.0 2.2 2 0 0 2 2 2 0 L-fucokinase Epimerase PF01370.21 gi|240102076|ref|YP_002958384.1| - 3.1e-56 190.5 0.0 4e-56 190.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|240102076|ref|YP_002958384.1| - 6.7e-50 170.3 0.0 1.5e-49 169.2 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|240102076|ref|YP_002958384.1| - 1.6e-24 86.4 0.0 2.1e-24 86.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|240102076|ref|YP_002958384.1| - 7e-19 68.0 0.0 9e-19 67.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|240102076|ref|YP_002958384.1| - 2.4e-16 59.7 0.0 1.7e-15 57.0 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|240102076|ref|YP_002958384.1| - 1.8e-12 47.0 0.1 1.5e-10 40.7 0.1 2.6 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|240102076|ref|YP_002958384.1| - 7.6e-12 45.5 0.0 1.2e-11 44.9 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|240102076|ref|YP_002958384.1| - 6.2e-10 39.0 0.0 5.3e-08 32.7 0.0 2.2 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.25 gi|240102076|ref|YP_002958384.1| - 8.9e-07 28.6 0.0 6.3e-06 25.8 0.0 2.1 2 0 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.18 gi|240102076|ref|YP_002958384.1| - 0.0039 17.4 0.0 0.0077 16.5 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.10 gi|240102076|ref|YP_002958384.1| - 0.012 15.5 0.3 0.087 12.7 0.3 2.1 1 1 0 1 1 1 0 KR domain Ldh_1_N PF00056.23 gi|240102076|ref|YP_002958384.1| - 0.084 13.0 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|240102076|ref|YP_002958384.1| - 0.17 11.2 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Peptidase_M50 PF02163.22 gi|240102077|ref|YP_002958385.1| - 3.4e-20 72.4 3.6 8.6e-19 67.8 0.3 3.0 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.6 gi|240102077|ref|YP_002958385.1| - 1.2e-15 57.6 0.0 2e-15 56.8 0.0 1.3 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|240102077|ref|YP_002958385.1| - 1e-07 31.7 0.1 1.8e-07 30.9 0.1 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|240102077|ref|YP_002958385.1| - 2.9e-06 27.5 0.1 5.6e-06 26.6 0.1 1.4 1 0 0 1 1 1 1 PDZ domain DctQ PF04290.12 gi|240102077|ref|YP_002958385.1| - 0.013 15.4 1.7 0.013 15.4 1.7 3.7 3 2 1 4 4 4 0 Tripartite ATP-independent periplasmic transporters, DctQ component Tricorn_PDZ PF14685.6 gi|240102077|ref|YP_002958385.1| - 0.024 14.6 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 Tricorn protease PDZ domain CODH_A_N PF18537.1 gi|240102077|ref|YP_002958385.1| - 0.083 12.9 0.0 0.57 10.2 0.0 2.1 2 0 0 2 2 2 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain GRASP55_65 PF04495.14 gi|240102077|ref|YP_002958385.1| - 0.12 12.7 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 GRASP55/65 PDZ-like domain ATP_bind_3 PF01171.20 gi|240102078|ref|YP_002958386.1| - 1.8e-15 57.2 0.0 5.7e-15 55.5 0.0 1.8 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|240102078|ref|YP_002958386.1| - 0.00011 21.2 0.0 0.00016 20.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|240102078|ref|YP_002958386.1| - 0.00063 19.8 0.0 0.0022 18.0 0.0 2.1 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family zn-ribbon_14 PF16503.5 gi|240102078|ref|YP_002958386.1| - 0.0034 16.9 2.2 0.0034 16.9 2.2 2.8 3 0 0 3 3 3 1 Zinc-ribbon CTU2 PF10288.9 gi|240102078|ref|YP_002958386.1| - 0.0083 16.4 1.7 0.071 13.3 0.4 2.8 2 1 0 2 2 2 1 Cytoplasmic tRNA 2-thiolation protein 2 Asn_synthase PF00733.21 gi|240102078|ref|YP_002958386.1| - 0.01 15.6 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase C1_2 PF03107.16 gi|240102078|ref|YP_002958386.1| - 0.021 15.1 0.3 0.021 15.1 0.3 2.8 3 0 0 3 3 3 0 C1 domain SopA PF13981.6 gi|240102078|ref|YP_002958386.1| - 0.037 14.5 0.0 0.067 13.6 0.0 1.4 1 0 0 1 1 1 0 SopA-like central domain NAD_synthase PF02540.17 gi|240102078|ref|YP_002958386.1| - 0.07 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 NAD synthase Ribosomal_S14 PF00253.21 gi|240102078|ref|YP_002958386.1| - 0.32 10.8 3.6 1.4 8.8 0.4 2.6 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e RecR PF02132.15 gi|240102078|ref|YP_002958386.1| - 0.8 9.3 10.5 0.076 12.6 2.0 2.9 3 0 0 3 3 3 0 RecR protein YyzF PF14116.6 gi|240102078|ref|YP_002958386.1| - 1.5 8.9 4.4 18 5.5 0.2 3.1 3 0 0 3 3 3 0 YyzF-like protein C5HCH PF17982.1 gi|240102078|ref|YP_002958386.1| - 3.7 7.8 8.6 1.1 9.5 0.6 2.5 2 0 0 2 2 2 0 NSD Cys-His rich domain zf-ribbon_3 PF13248.6 gi|240102078|ref|YP_002958386.1| - 7.4 6.1 12.0 9.7 5.8 1.2 3.6 3 0 0 3 3 3 0 zinc-ribbon domain DUF3970 PF13113.6 gi|240102079|ref|YP_002958387.1| - 0.16 12.2 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) DUF4043 PF13252.6 gi|240102079|ref|YP_002958387.1| - 0.16 11.0 0.0 0.17 11.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4043) HTH_34 PF13601.6 gi|240102081|ref|YP_002958389.1| - 5.4e-17 61.8 0.3 6.2e-17 61.5 0.3 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|240102081|ref|YP_002958389.1| - 3.5e-09 36.6 0.5 3.5e-09 36.6 0.5 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|240102081|ref|YP_002958389.1| - 7.9e-09 35.3 0.2 2.5e-08 33.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|240102081|ref|YP_002958389.1| - 0.00018 21.0 0.1 0.00078 19.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|240102081|ref|YP_002958389.1| - 0.00077 19.4 0.2 0.0011 18.9 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_12 PF08461.10 gi|240102081|ref|YP_002958389.1| - 0.035 14.0 1.1 0.048 13.6 0.3 1.8 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HxlR PF01638.17 gi|240102081|ref|YP_002958389.1| - 0.091 12.6 0.1 0.12 12.3 0.1 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix CPBP PF02517.16 gi|240102082|ref|YP_002958390.1| - 7.5e-13 48.7 5.8 7.5e-13 48.7 5.8 1.7 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease ATPase PF06745.13 gi|240102083|ref|YP_002958391.1| - 0.005 16.2 0.0 0.022 14.1 0.0 1.9 1 1 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|240102083|ref|YP_002958391.1| - 0.055 12.6 0.9 0.21 10.7 0.5 1.9 2 0 0 2 2 2 0 PAXNEB protein Phage_holin_3_6 PF07332.11 gi|240102084|ref|YP_002958392.1| - 0.04 14.0 0.9 0.04 14.0 0.9 2.9 2 1 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2070 PF09843.9 gi|240102084|ref|YP_002958392.1| - 0.15 10.3 7.8 0.17 10.1 7.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) HRG PF16954.5 gi|240102084|ref|YP_002958392.1| - 0.18 12.2 0.2 0.18 12.2 0.2 4.0 4 1 0 4 4 4 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene HTH_34 PF13601.6 gi|240102085|ref|YP_002958393.1| - 3e-21 75.4 0.0 3.6e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|240102085|ref|YP_002958393.1| - 1.4e-08 34.6 0.0 2.5e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|240102085|ref|YP_002958393.1| - 9.3e-08 31.8 0.0 2.9e-07 30.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|240102085|ref|YP_002958393.1| - 0.00012 22.0 0.1 0.00017 21.5 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|240102085|ref|YP_002958393.1| - 0.00055 20.4 0.0 0.01 16.3 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|240102085|ref|YP_002958393.1| - 0.0073 16.1 0.3 0.012 15.5 0.1 1.4 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|240102085|ref|YP_002958393.1| - 0.014 14.9 0.0 0.031 13.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|240102085|ref|YP_002958393.1| - 0.027 14.4 0.0 0.035 14.0 0.0 1.3 1 1 0 1 1 1 0 MarR family MarR PF01047.22 gi|240102085|ref|YP_002958393.1| - 0.049 13.6 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF2238 PF09997.9 gi|240102086|ref|YP_002958394.1| - 0.011 15.6 0.2 0.02 14.7 0.2 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2238) Oxidored_q5_N PF01059.17 gi|240102086|ref|YP_002958394.1| - 0.027 14.6 3.8 0.099 12.7 0.2 2.2 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus VanZ PF04892.12 gi|240102086|ref|YP_002958394.1| - 0.67 10.6 5.8 0.88 10.2 2.0 2.7 1 1 1 2 2 2 0 VanZ like family DUF460 PF04312.13 gi|240102087|ref|YP_002958395.1| - 5e-50 168.9 0.0 1.1e-49 167.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|240102087|ref|YP_002958395.1| - 1.3e-05 25.5 0.3 1.3e-05 25.5 0.3 3.1 3 0 0 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor SlyX PF04102.12 gi|240102087|ref|YP_002958395.1| - 6.2e-05 23.5 5.0 6.2e-05 23.5 5.0 4.6 6 0 0 6 6 5 1 SlyX GFO_IDH_MocA PF01408.22 gi|240102087|ref|YP_002958395.1| - 0.0025 18.7 0.0 0.0077 17.0 0.0 1.9 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Hydrolase PF00702.26 gi|240102087|ref|YP_002958395.1| - 0.014 15.7 0.4 7.5 6.8 0.1 3.1 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase Fib_alpha PF08702.10 gi|240102087|ref|YP_002958395.1| - 0.054 13.7 5.0 0.085 13.0 0.3 2.6 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Endonuc-dimeris PF09124.10 gi|240102087|ref|YP_002958395.1| - 0.098 12.8 0.1 0.25 11.5 0.1 1.7 1 0 0 1 1 1 0 T4 recombination endonuclease VII, dimerisation DUF429 PF04250.13 gi|240102087|ref|YP_002958395.1| - 0.17 11.6 2.0 13 5.5 0.0 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF429) V_ATPase_I PF01496.19 gi|240102087|ref|YP_002958395.1| - 0.22 9.4 3.1 0.45 8.4 3.1 1.4 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FAM76 PF16046.5 gi|240102087|ref|YP_002958395.1| - 0.35 10.2 3.0 0.57 9.5 3.0 1.3 1 0 0 1 1 1 0 FAM76 protein MPS2 PF17060.5 gi|240102087|ref|YP_002958395.1| - 0.68 9.1 10.0 1.5 8.0 10.0 1.5 1 1 0 1 1 1 0 Monopolar spindle protein 2 DUF1664 PF07889.12 gi|240102087|ref|YP_002958395.1| - 1.2 9.1 4.2 1.6 8.8 1.8 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Peptidase_C15 PF01470.17 gi|240102089|ref|YP_002958397.1| - 2.4e-69 233.6 0.0 2.7e-69 233.4 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase FAD_binding_3 PF01494.19 gi|240102090|ref|YP_002958398.1| - 9e-18 64.6 2.1 1e-15 57.9 2.1 2.7 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|240102090|ref|YP_002958398.1| - 1.5e-06 27.4 1.5 0.0029 16.5 0.1 2.5 1 1 1 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|240102090|ref|YP_002958398.1| - 3.3e-05 23.1 0.1 0.00038 19.6 0.1 2.1 1 1 0 1 1 1 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|240102090|ref|YP_002958398.1| - 4.4e-05 23.6 1.6 0.00044 20.4 0.3 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|240102090|ref|YP_002958398.1| - 0.00017 20.9 0.2 0.00053 19.3 0.1 1.9 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|240102090|ref|YP_002958398.1| - 0.00044 19.9 6.7 0.0085 15.7 0.3 2.6 2 1 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|240102090|ref|YP_002958398.1| - 0.0074 15.0 0.1 0.015 14.0 0.1 1.5 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|240102090|ref|YP_002958398.1| - 0.03 13.6 0.6 0.11 11.7 0.2 1.8 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|240102090|ref|YP_002958398.1| - 0.085 13.1 0.3 0.25 11.6 0.1 1.9 2 0 0 2 2 2 0 TrkA-N domain XdhC_C PF13478.6 gi|240102090|ref|YP_002958398.1| - 0.14 12.7 0.0 0.86 10.1 0.0 2.2 1 1 0 1 1 1 0 XdhC Rossmann domain Rubrerythrin PF02915.17 gi|240102091|ref|YP_002958399.1| - 3.4e-21 76.1 11.6 1.3e-14 54.8 4.6 1.9 1 1 1 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.6 gi|240102091|ref|YP_002958399.1| - 8.1e-05 22.8 0.1 0.00016 21.8 0.1 1.5 1 1 0 1 1 1 1 Ferritin-like domain Ferritin PF00210.24 gi|240102091|ref|YP_002958399.1| - 8.6e-05 22.5 1.6 0.00017 21.5 1.4 1.7 1 1 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|240102091|ref|YP_002958399.1| - 0.00014 22.2 0.6 0.0026 18.1 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Coat_F PF07875.12 gi|240102091|ref|YP_002958399.1| - 0.0004 20.6 0.0 0.059 13.6 0.0 2.2 2 0 0 2 2 2 1 Coat F domain DUF892 PF05974.12 gi|240102091|ref|YP_002958399.1| - 0.011 15.7 3.1 0.66 10.0 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) DUF4162 PF13732.6 gi|240102091|ref|YP_002958399.1| - 0.091 13.5 0.0 0.19 12.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) TPR_10 PF13374.6 gi|240102091|ref|YP_002958399.1| - 0.18 11.7 1.9 6.2 6.8 0.2 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|240102091|ref|YP_002958399.1| - 0.28 11.5 4.9 10 6.5 0.1 3.3 3 1 0 3 3 3 0 Tetratricopeptide repeat Fer4 PF00037.27 gi|240102092|ref|YP_002958400.1| - 7e-16 57.3 14.0 7.4e-09 35.1 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102092|ref|YP_002958400.1| - 3.1e-12 46.9 20.2 1.7e-05 25.3 0.6 2.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|240102092|ref|YP_002958400.1| - 5e-12 45.3 14.9 1.4e-07 31.3 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|240102092|ref|YP_002958400.1| - 1e-10 41.6 7.6 3.6e-05 23.8 0.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102092|ref|YP_002958400.1| - 2e-10 40.1 12.6 4.2e-06 26.5 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|240102092|ref|YP_002958400.1| - 1.7e-09 37.7 11.9 3.1e-09 36.9 11.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240102092|ref|YP_002958400.1| - 1.8e-09 38.4 12.5 5.3e-06 27.3 3.8 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|240102092|ref|YP_002958400.1| - 2.2e-08 34.4 6.2 0.00059 20.2 0.6 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|240102092|ref|YP_002958400.1| - 7.4e-08 32.8 5.1 0.0038 17.7 0.1 2.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240102092|ref|YP_002958400.1| - 1.6e-07 31.3 16.2 0.0017 18.7 4.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240102092|ref|YP_002958400.1| - 6.2e-07 29.5 13.7 0.00033 20.7 3.8 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|240102092|ref|YP_002958400.1| - 1.8e-05 25.5 6.2 0.013 16.3 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|240102092|ref|YP_002958400.1| - 0.00015 22.4 20.1 0.0011 19.8 5.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|240102092|ref|YP_002958400.1| - 0.00066 19.9 12.1 0.00066 19.9 12.1 2.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|240102092|ref|YP_002958400.1| - 0.0026 18.5 12.3 0.088 13.6 1.3 2.7 1 1 2 3 3 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|240102092|ref|YP_002958400.1| - 0.0067 17.0 15.7 0.031 14.8 1.5 2.7 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I NADHdh PF00146.21 gi|240102093|ref|YP_002958401.1| - 7.3e-58 196.2 18.9 8.7e-58 196.0 18.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Rad21_Rec8 PF04824.16 gi|240102093|ref|YP_002958401.1| - 0.14 11.5 0.0 18 4.7 0.0 2.5 2 0 0 2 2 2 0 Conserved region of Rad21 / Rec8 like protein Transgly_assoc PF04226.13 gi|240102093|ref|YP_002958401.1| - 0.65 10.3 0.1 0.65 10.3 0.1 4.8 3 1 1 4 4 4 0 Transglycosylase associated protein Complex1_49kDa PF00346.19 gi|240102094|ref|YP_002958402.1| - 8.3e-56 189.1 0.0 7.8e-55 185.9 0.0 2.0 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|240102094|ref|YP_002958402.1| - 2e-19 69.9 4.2 2.8e-14 52.9 0.5 3.9 4 0 0 4 4 4 4 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|240102095|ref|YP_002958403.1| - 4.3e-21 75.8 0.0 8.5e-21 74.8 0.0 1.4 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LBP_BPI_CETP_C PF02886.17 gi|240102095|ref|YP_002958403.1| - 0.22 10.9 0.0 0.3 10.5 0.0 1.2 1 0 0 1 1 1 0 LBP / BPI / CETP family, C-terminal domain Oxidored_q6 PF01058.22 gi|240102096|ref|YP_002958404.1| - 6.7e-30 103.6 0.1 8.8e-30 103.2 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit CoA_binding_3 PF13727.6 gi|240102097|ref|YP_002958405.1| - 0.082 12.9 0.0 0.082 12.9 0.0 1.6 2 0 0 2 2 2 0 CoA-binding domain PspB PF06667.12 gi|240102097|ref|YP_002958405.1| - 0.95 9.6 3.0 12 6.0 0.0 2.1 2 0 0 2 2 2 0 Phage shock protein B Proton_antipo_M PF00361.20 gi|240102098|ref|YP_002958406.1| - 1.2e-63 215.1 26.0 2.6e-63 214.0 26.0 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|240102098|ref|YP_002958406.1| - 2.1e-11 43.7 0.9 2.1e-11 43.7 0.9 3.0 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|240102099|ref|YP_002958407.1| - 3.1e-26 91.0 3.8 3.7e-26 90.8 3.8 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|240102099|ref|YP_002958407.1| - 0.0098 15.8 2.0 0.0098 15.8 2.0 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) Saf_2TM PF18303.1 gi|240102099|ref|YP_002958407.1| - 0.23 11.0 2.9 0.24 11.0 0.1 1.8 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain DUF4418 PF14387.6 gi|240102099|ref|YP_002958407.1| - 0.33 11.1 4.6 0.31 11.3 1.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) SPW PF03779.14 gi|240102099|ref|YP_002958407.1| - 0.37 10.4 4.7 0.7 9.5 1.4 2.2 2 0 0 2 2 2 0 SPW repeat FtsX PF02687.21 gi|240102099|ref|YP_002958407.1| - 1.2 9.7 6.6 3.2 8.3 6.6 1.8 1 1 0 1 1 1 0 FtsX-like permease family MnhB PF04039.13 gi|240102100|ref|YP_002958408.1| - 3.8e-26 91.8 13.3 4.6e-26 91.6 13.3 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2244 PF10003.9 gi|240102100|ref|YP_002958408.1| - 0.76 9.5 3.8 2.8 7.6 0.5 2.3 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) DUF2157 PF09925.9 gi|240102100|ref|YP_002958408.1| - 1.2 8.9 10.7 0.19 11.5 1.7 2.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) DUF2106 PF09879.9 gi|240102101|ref|YP_002958409.1| - 0.0049 16.4 0.2 0.0064 16.1 0.2 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) DUF4040 PF13244.6 gi|240102102|ref|YP_002958410.1| - 3.2e-17 62.4 8.7 3.2e-17 62.4 8.7 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) TspO_MBR PF03073.15 gi|240102102|ref|YP_002958410.1| - 0.027 14.5 4.8 0.033 14.3 4.8 1.1 1 0 0 1 1 1 0 TspO/MBR family PhaG_MnhG_YufB PF03334.14 gi|240102103|ref|YP_002958411.1| - 6.4e-22 77.6 7.9 7.7e-22 77.3 7.9 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF1541 PF07563.11 gi|240102103|ref|YP_002958411.1| - 0.06 13.2 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1541) TssN PF17555.2 gi|240102103|ref|YP_002958411.1| - 0.41 10.0 2.6 0.52 9.7 2.6 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN MrpF_PhaF PF04066.13 gi|240102104|ref|YP_002958412.1| - 4e-21 75.1 7.6 4e-21 75.1 7.6 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2108 PF09881.9 gi|240102104|ref|YP_002958412.1| - 4.5 7.3 12.5 0.1 12.6 2.5 2.4 2 1 1 3 3 3 0 Predicted membrane protein (DUF2108) MNHE PF01899.16 gi|240102105|ref|YP_002958413.1| - 1.3e-41 141.8 0.2 1.5e-41 141.6 0.2 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit 12TM_1 PF09847.9 gi|240102105|ref|YP_002958413.1| - 0.049 12.7 1.8 0.056 12.5 1.8 1.1 1 0 0 1 1 1 0 Membrane protein of 12 TMs Proton_antipo_M PF00361.20 gi|240102106|ref|YP_002958414.1| - 4e-60 203.5 27.5 4e-60 203.5 27.5 1.8 3 0 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|240102106|ref|YP_002958414.1| - 0.0001 22.3 0.8 0.0001 22.3 0.8 3.3 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MNHE PF01899.16 gi|240102107|ref|YP_002958415.1| - 2.5e-42 144.1 0.7 2.9e-42 143.9 0.7 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit UbiA PF01040.18 gi|240102107|ref|YP_002958415.1| - 0.01 15.1 3.2 0.012 14.9 3.2 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF1576 PF07613.11 gi|240102107|ref|YP_002958415.1| - 0.039 13.5 0.7 0.059 12.9 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1576) RNaseH_C PF09293.10 gi|240102107|ref|YP_002958415.1| - 0.075 13.4 0.2 0.22 11.9 0.2 1.7 1 1 0 1 1 1 0 T4 RNase H, C terminal DUF3558 PF12079.8 gi|240102107|ref|YP_002958415.1| - 0.082 12.9 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) Oxidored_q2 PF00420.24 gi|240102108|ref|YP_002958416.1| - 1.2e-18 66.7 4.3 1.6e-18 66.3 4.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PRIMA1 PF16101.5 gi|240102108|ref|YP_002958416.1| - 1.7 8.7 3.9 1 9.4 0.3 2.0 2 0 0 2 2 2 0 Proline-rich membrane anchor 1 MnhB PF04039.13 gi|240102109|ref|YP_002958417.1| - 4.6e-20 72.2 9.6 4.6e-20 72.2 9.6 2.2 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter Acyl_transf_3 PF01757.22 gi|240102109|ref|YP_002958417.1| - 0.0059 15.7 1.7 0.0059 15.7 1.7 1.5 2 0 0 2 2 2 1 Acyltransferase family NrsF PF06532.11 gi|240102109|ref|YP_002958417.1| - 0.0073 16.1 1.7 0.014 15.1 1.0 1.8 2 0 0 2 2 2 1 Negative regulator of sigma F DUF2106 PF09879.9 gi|240102109|ref|YP_002958417.1| - 0.011 15.3 0.1 0.021 14.4 0.1 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) COX8 PF02285.15 gi|240102109|ref|YP_002958417.1| - 0.98 9.4 6.0 12 5.9 0.1 3.5 4 0 0 4 4 4 0 Cytochrome oxidase c subunit VIII DUF4040 PF13244.6 gi|240102110|ref|YP_002958418.1| - 6.9e-12 45.3 5.3 6.9e-12 45.3 5.3 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Proton_antipo_M PF00361.20 gi|240102110|ref|YP_002958418.1| - 0.015 14.5 6.4 0.017 14.4 6.4 1.1 1 0 0 1 1 1 0 Proton-conducting membrane transporter Holin_9 PF16936.5 gi|240102110|ref|YP_002958418.1| - 0.029 14.5 1.7 0.06 13.5 0.4 1.9 2 0 0 2 2 2 0 Putative holin Form-deh_trans PF09163.11 gi|240102110|ref|YP_002958418.1| - 0.23 11.3 0.5 0.23 11.3 0.5 2.5 3 0 0 3 3 3 0 Formate dehydrogenase N, transmembrane DUF2070 PF09843.9 gi|240102110|ref|YP_002958418.1| - 1.5 7.0 7.3 1.6 6.9 7.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CPBP PF02517.16 gi|240102110|ref|YP_002958418.1| - 8.5 6.8 7.4 14 6.2 2.4 2.1 1 1 1 2 2 2 0 CPBP intramembrane metalloprotease PhaG_MnhG_YufB PF03334.14 gi|240102111|ref|YP_002958419.1| - 2.4e-15 56.5 10.2 3.3e-15 56.1 10.2 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF2545 PF10810.8 gi|240102111|ref|YP_002958419.1| - 0.16 12.2 3.9 0.12 12.5 2.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2545) HPP PF04982.13 gi|240102111|ref|YP_002958419.1| - 0.32 11.2 7.6 0.39 10.9 7.6 1.3 1 1 0 1 1 1 0 HPP family 7TMR-DISM_7TM PF07695.11 gi|240102111|ref|YP_002958419.1| - 0.37 10.7 6.8 0.22 11.4 3.0 1.9 1 1 1 2 2 2 0 7TM diverse intracellular signalling MrpF_PhaF PF04066.13 gi|240102112|ref|YP_002958420.1| - 1.1e-09 38.5 6.6 1.1e-09 38.5 6.6 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Form_Nir_trans PF01226.17 gi|240102113|ref|YP_002958421.1| - 1.7e-70 237.0 24.5 2.8e-70 236.3 24.5 1.3 1 0 0 1 1 1 1 Formate/nitrite transporter Oxidored_q6 PF01058.22 gi|240102115|ref|YP_002958423.1| - 1.6e-21 76.5 0.0 4.6e-21 75.0 0.0 1.7 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4_7 PF12838.7 gi|240102116|ref|YP_002958424.1| - 6.6e-16 58.6 27.5 2.7e-13 50.3 8.4 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|240102116|ref|YP_002958424.1| - 9.9e-14 50.5 14.8 3.1e-09 36.3 3.2 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|240102116|ref|YP_002958424.1| - 3e-13 49.7 33.3 2.1e-08 34.2 11.0 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102116|ref|YP_002958424.1| - 1.8e-11 43.9 17.3 2.1e-06 27.8 3.1 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102116|ref|YP_002958424.1| - 7.4e-10 38.3 25.2 4.6e-07 29.5 4.2 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|240102116|ref|YP_002958424.1| - 6.1e-09 35.6 15.6 3.8e-08 33.1 4.0 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240102116|ref|YP_002958424.1| - 8.5e-09 35.4 7.3 8.5e-09 35.4 7.3 2.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240102116|ref|YP_002958424.1| - 2.1e-08 35.0 16.0 0.001 19.9 0.7 2.9 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|240102116|ref|YP_002958424.1| - 2.9e-07 30.8 13.4 0.0033 17.8 0.3 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|240102116|ref|YP_002958424.1| - 1.1e-05 25.8 17.5 0.051 14.1 2.3 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240102116|ref|YP_002958424.1| - 8.8e-05 22.7 1.1 8.8e-05 22.7 1.1 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain DZR PF12773.7 gi|240102116|ref|YP_002958424.1| - 0.00016 21.6 8.1 4.6 7.3 4.3 3.2 3 0 0 3 3 3 3 Double zinc ribbon Fer4_13 PF13370.6 gi|240102116|ref|YP_002958424.1| - 0.0033 17.9 13.6 0.019 15.5 1.6 2.9 3 0 0 3 3 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|240102116|ref|YP_002958424.1| - 0.0044 17.9 6.7 0.0044 17.9 6.7 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain zf-RRPl_C4 PF17026.5 gi|240102116|ref|YP_002958424.1| - 0.013 15.6 1.7 0.037 14.1 0.0 2.0 2 0 0 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type ETF_QO PF05187.13 gi|240102116|ref|YP_002958424.1| - 0.014 15.5 3.2 0.045 13.9 1.4 2.4 2 1 1 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Methyltransf_13 PF08421.11 gi|240102116|ref|YP_002958424.1| - 0.016 15.5 2.1 4.3 7.7 0.0 3.0 3 0 0 3 3 3 0 Putative zinc binding domain Fer4_15 PF13459.6 gi|240102116|ref|YP_002958424.1| - 0.017 15.8 12.8 0.038 14.7 0.4 3.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain CxC4 PF18717.1 gi|240102116|ref|YP_002958424.1| - 0.027 14.3 1.0 0.027 14.3 1.0 1.6 2 0 0 2 2 1 0 CxC4 like cysteine cluster associated with KDZ transposases zinc_ribbon_15 PF17032.5 gi|240102116|ref|YP_002958424.1| - 0.027 15.2 4.3 0.19 12.5 0.0 2.5 2 1 0 2 2 2 0 zinc-ribbon family Fer4_22 PF17179.4 gi|240102116|ref|YP_002958424.1| - 0.028 15.3 16.1 0.093 13.6 1.0 2.7 3 1 0 3 3 2 0 4Fe-4S dicluster domain TF_Zn_Ribbon PF08271.12 gi|240102116|ref|YP_002958424.1| - 0.21 11.1 0.1 0.21 11.1 0.1 3.5 4 1 0 4 4 4 0 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|240102116|ref|YP_002958424.1| - 0.33 11.7 0.1 0.33 11.7 0.1 4.1 4 1 0 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF35_N PF12172.8 gi|240102116|ref|YP_002958424.1| - 0.34 10.8 0.1 0.34 10.8 0.1 3.8 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Fer4_18 PF13746.6 gi|240102116|ref|YP_002958424.1| - 0.43 10.8 14.1 0.68 10.1 1.5 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain zinc_ribbon_2 PF13240.6 gi|240102116|ref|YP_002958424.1| - 3 7.7 0.0 3 7.7 0.0 3.9 4 0 0 4 4 3 0 zinc-ribbon domain Complex1_49kDa PF00346.19 gi|240102117|ref|YP_002958425.1| - 2.7e-62 210.3 2.9 4.2e-47 160.5 0.1 2.5 2 1 1 3 3 3 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|240102117|ref|YP_002958425.1| - 1.3e-29 103.3 0.0 2.5e-29 102.4 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|240102117|ref|YP_002958425.1| - 1.1e-17 64.2 4.5 3.1e-15 56.1 0.2 2.9 2 1 0 2 2 2 2 Nickel-dependent hydrogenase NADHdh PF00146.21 gi|240102118|ref|YP_002958426.1| - 1.9e-42 145.6 23.7 2.4e-42 145.3 23.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|240102119|ref|YP_002958427.1| - 1.6e-58 198.2 23.7 6.3e-58 196.3 23.7 2.0 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|240102119|ref|YP_002958427.1| - 9.9e-05 22.3 1.7 0.00091 19.2 1.5 2.7 1 1 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|240102120|ref|YP_002958428.1| - 6e-48 163.5 16.6 6e-48 163.5 16.6 1.8 1 1 1 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|240102120|ref|YP_002958428.1| - 0.0037 17.3 0.3 0.0037 17.3 0.3 2.9 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|240102121|ref|YP_002958429.1| - 7.9e-48 163.1 24.4 7.9e-48 163.1 24.4 2.4 2 1 1 3 3 3 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|240102121|ref|YP_002958429.1| - 5.5e-08 32.8 0.6 1e-06 28.7 0.1 3.0 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Fer4_11 PF13247.6 gi|240102122|ref|YP_002958430.1| - 1.7e-25 89.1 8.8 1.7e-25 89.1 8.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|240102122|ref|YP_002958430.1| - 1.5e-12 47.9 27.5 5.9e-06 26.8 13.7 3.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|240102122|ref|YP_002958430.1| - 2.9e-11 42.7 39.4 0.00047 19.8 3.4 5.3 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|240102122|ref|YP_002958430.1| - 9e-10 38.6 27.3 8.5e-05 22.7 12.3 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102122|ref|YP_002958430.1| - 2.6e-09 37.0 29.2 2.5e-05 24.3 8.4 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102122|ref|YP_002958430.1| - 9.9e-09 34.8 29.1 0.0027 17.7 2.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|240102122|ref|YP_002958430.1| - 1.3e-08 34.5 37.6 0.0041 17.1 2.6 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|240102122|ref|YP_002958430.1| - 2.8e-06 27.9 39.8 0.016 16.1 5.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240102122|ref|YP_002958430.1| - 3.3e-06 27.1 30.3 3.2e-05 24.0 8.6 3.9 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240102122|ref|YP_002958430.1| - 4.9e-06 27.4 28.0 0.027 15.4 2.6 4.6 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|240102122|ref|YP_002958430.1| - 0.00011 22.4 33.0 0.02 15.4 3.0 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240102122|ref|YP_002958430.1| - 0.00013 22.4 25.9 0.16 12.5 1.4 4.4 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|240102122|ref|YP_002958430.1| - 0.035 13.9 3.1 0.035 13.9 3.1 4.0 1 1 3 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_8 PF13183.6 gi|240102122|ref|YP_002958430.1| - 0.091 13.2 33.9 0.37 11.3 14.3 4.1 2 2 3 5 5 5 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|240102123|ref|YP_002958431.1| - 2e-95 320.3 0.0 2.5e-95 320.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|240102123|ref|YP_002958431.1| - 5.5e-31 106.9 0.0 1.2e-30 105.8 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|240102123|ref|YP_002958431.1| - 7.2e-09 35.5 0.1 1.6e-08 34.4 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|240102123|ref|YP_002958431.1| - 0.17 12.1 0.0 0.42 10.8 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain FrhB_FdhB_C PF04432.13 gi|240102124|ref|YP_002958432.1| - 5.1e-29 101.1 0.0 7e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|240102124|ref|YP_002958432.1| - 5.7e-20 71.3 0.1 8.8e-20 70.6 0.1 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Oxidored_q6 PF01058.22 gi|240102125|ref|YP_002958433.1| - 3e-23 82.1 0.0 5.9e-23 81.1 0.0 1.5 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|240102125|ref|YP_002958433.1| - 2.4e-11 42.9 22.4 1.4e-07 31.0 2.9 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|240102125|ref|YP_002958433.1| - 1.7e-08 34.5 9.6 1.7e-08 34.5 9.6 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|240102125|ref|YP_002958433.1| - 2.8e-08 34.2 9.2 2.8e-08 34.2 9.2 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|240102125|ref|YP_002958433.1| - 2.7e-07 30.4 11.9 5.9e-05 23.0 3.3 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|240102125|ref|YP_002958433.1| - 1.1e-06 28.3 17.4 0.0042 17.1 2.3 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240102125|ref|YP_002958433.1| - 2.5e-06 27.5 23.0 3.6e-05 23.8 11.2 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102125|ref|YP_002958433.1| - 1.7e-05 24.8 11.9 1.7e-05 24.8 11.9 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240102125|ref|YP_002958433.1| - 3.3e-05 24.0 21.5 0.0013 19.1 2.5 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|240102125|ref|YP_002958433.1| - 0.00058 20.7 13.8 0.001 19.9 1.4 2.9 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|240102125|ref|YP_002958433.1| - 0.00063 20.2 11.6 0.043 14.3 0.6 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|240102125|ref|YP_002958433.1| - 0.0019 19.0 5.1 0.0019 19.0 5.1 3.6 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240102125|ref|YP_002958433.1| - 0.071 13.7 18.4 0.083 13.5 1.8 2.9 2 1 1 3 3 2 0 4Fe-4S dicluster domain HydF_tetramer PF18133.1 gi|240102125|ref|YP_002958433.1| - 1.8 8.3 8.0 2.5 7.9 0.0 3.1 2 1 1 3 3 3 0 Hydrogen maturase F tetramerization domain ETF_QO PF05187.13 gi|240102125|ref|YP_002958433.1| - 2.5 8.3 4.5 11 6.2 1.3 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|240102125|ref|YP_002958433.1| - 2.6 8.3 8.9 7.2 6.9 8.9 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|240102125|ref|YP_002958433.1| - 4 8.4 17.2 1.2 10.1 2.3 3.0 2 1 1 4 4 4 0 4Fe-4S dicluster domain NiFeSe_Hases PF00374.19 gi|240102126|ref|YP_002958434.1| - 2.9e-26 92.5 4.8 1.1e-14 54.2 0.1 4.8 2 1 1 4 4 4 4 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|240102126|ref|YP_002958434.1| - 2.3e-05 23.7 0.0 0.00061 19.0 0.0 2.1 2 0 0 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Fer4_11 PF13247.6 gi|240102127|ref|YP_002958435.1| - 5.4e-27 93.9 12.1 5.4e-27 93.9 12.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|240102127|ref|YP_002958435.1| - 3e-13 49.0 41.1 2.1e-07 30.4 4.7 5.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|240102127|ref|YP_002958435.1| - 1.6e-12 46.9 40.2 1.2e-07 31.5 4.1 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102127|ref|YP_002958435.1| - 1.4e-10 41.6 31.2 1.7e-06 28.5 13.1 4.0 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240102127|ref|YP_002958435.1| - 9.5e-10 38.5 48.6 1.1e-05 25.5 10.8 3.2 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102127|ref|YP_002958435.1| - 3.1e-09 36.8 32.6 1.2e-05 25.3 14.5 4.0 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102127|ref|YP_002958435.1| - 5e-09 35.7 32.5 5.8e-05 22.9 1.9 4.3 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|240102127|ref|YP_002958435.1| - 3.8e-06 27.8 30.4 0.25 12.3 4.9 5.0 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|240102127|ref|YP_002958435.1| - 0.00015 22.3 27.5 0.78 10.3 1.2 4.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240102127|ref|YP_002958435.1| - 0.00023 21.4 34.4 0.00073 19.9 2.0 4.3 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|240102127|ref|YP_002958435.1| - 0.00032 21.4 44.6 0.22 12.5 5.8 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240102127|ref|YP_002958435.1| - 0.0016 18.5 32.4 0.0033 17.5 12.0 3.7 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|240102127|ref|YP_002958435.1| - 0.031 14.8 2.1 0.031 14.8 2.1 3.8 3 2 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|240102127|ref|YP_002958435.1| - 0.24 12.2 25.0 5.2 7.9 9.1 4.2 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|240102127|ref|YP_002958435.1| - 1.3 9.5 34.5 1.7e+02 2.8 3.4 4.4 2 2 2 4 4 4 0 4Fe-4S dicluster domain Pyr_redox_2 PF07992.14 gi|240102128|ref|YP_002958436.1| - 2e-38 132.3 0.0 3.3e-38 131.6 0.0 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|240102128|ref|YP_002958436.1| - 6.4e-14 51.9 0.0 1.9e-09 37.2 0.0 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|240102128|ref|YP_002958436.1| - 1.8e-08 34.8 1.1 0.0037 17.8 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|240102128|ref|YP_002958436.1| - 8.1e-08 32.4 0.6 2.4e-07 30.8 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FMO-like PF00743.19 gi|240102128|ref|YP_002958436.1| - 1e-07 30.8 0.0 0.0001 20.9 0.0 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like AlaDh_PNT_C PF01262.21 gi|240102128|ref|YP_002958436.1| - 9.8e-07 28.3 0.0 0.027 13.8 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|240102128|ref|YP_002958436.1| - 1.2e-05 24.7 3.6 0.0064 15.6 0.1 4.2 4 1 1 5 5 5 1 FAD binding domain HI0933_like PF03486.14 gi|240102128|ref|YP_002958436.1| - 3.9e-05 22.5 1.1 0.00013 20.9 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Shikimate_DH PF01488.20 gi|240102128|ref|YP_002958436.1| - 6.4e-05 23.0 0.0 0.35 10.9 0.0 3.0 3 0 0 3 3 3 2 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 gi|240102128|ref|YP_002958436.1| - 6.9e-05 22.6 2.6 0.014 15.0 0.3 3.2 2 1 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|240102128|ref|YP_002958436.1| - 0.00013 21.4 1.3 0.00026 20.4 0.1 1.9 2 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|240102128|ref|YP_002958436.1| - 0.00014 21.4 0.6 0.035 13.5 0.0 2.9 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|240102128|ref|YP_002958436.1| - 0.00021 20.5 4.3 0.14 11.2 0.1 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 gi|240102128|ref|YP_002958436.1| - 0.00027 20.3 0.0 0.076 12.4 0.0 2.6 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|240102128|ref|YP_002958436.1| - 0.0013 18.0 0.0 0.0058 15.9 0.0 1.9 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 gi|240102128|ref|YP_002958436.1| - 0.0018 18.7 0.0 0.66 10.5 0.0 2.5 2 1 0 2 2 2 1 Putative NAD(P)-binding MCRA PF06100.11 gi|240102128|ref|YP_002958436.1| - 0.0022 16.9 0.0 0.003 16.4 0.0 1.1 1 0 0 1 1 1 1 MCRA family NAD_binding_9 PF13454.6 gi|240102128|ref|YP_002958436.1| - 0.012 15.7 1.7 0.072 13.1 0.2 2.7 4 0 0 4 4 3 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|240102128|ref|YP_002958436.1| - 0.024 14.5 0.1 0.085 12.7 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|240102128|ref|YP_002958436.1| - 0.03 13.6 0.8 0.93 8.7 0.0 2.9 2 1 0 3 3 3 0 Flavin containing amine oxidoreductase F420_oxidored PF03807.17 gi|240102128|ref|YP_002958436.1| - 0.032 14.8 0.2 6.6 7.4 0.0 3.1 4 0 0 4 4 2 0 NADP oxidoreductase coenzyme F420-dependent Lycopene_cycl PF05834.12 gi|240102128|ref|YP_002958436.1| - 1.1 8.2 2.6 0.53 9.3 0.2 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein PEP-CTERM PF07589.11 gi|240102128|ref|YP_002958436.1| - 7.7 6.8 6.4 8.5 6.6 1.8 2.5 2 0 0 2 2 2 0 PEP-CTERM motif Fer4_7 PF12838.7 gi|240102129|ref|YP_002958437.1| - 5.9e-11 42.8 9.2 5.9e-11 42.8 9.2 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|240102129|ref|YP_002958437.1| - 7e-11 41.5 24.3 6.8e-10 38.3 3.9 4.3 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|240102129|ref|YP_002958437.1| - 9.6e-09 36.1 11.5 0.00021 22.2 1.2 2.4 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|240102129|ref|YP_002958437.1| - 4.1e-08 33.2 16.8 6.2e-07 29.4 11.5 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102129|ref|YP_002958437.1| - 5.1e-08 32.5 18.8 5e-05 23.1 1.6 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|240102129|ref|YP_002958437.1| - 2.2e-07 30.7 11.9 8.3e-06 25.7 3.7 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240102129|ref|YP_002958437.1| - 2.4e-07 30.8 8.1 2.4e-07 30.8 8.1 1.9 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240102129|ref|YP_002958437.1| - 2.4e-07 30.8 8.3 2.4e-07 30.8 8.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|240102129|ref|YP_002958437.1| - 4.8e-06 26.9 13.7 0.00034 21.0 0.6 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|240102129|ref|YP_002958437.1| - 0.00065 20.2 11.7 0.01 16.3 2.2 3.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|240102129|ref|YP_002958437.1| - 0.0016 19.2 5.0 0.0016 19.2 5.0 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|240102129|ref|YP_002958437.1| - 0.0041 17.5 3.1 0.0041 17.5 3.1 3.9 4 0 0 4 4 4 1 4Fe-4S binding domain Stig1 PF04885.13 gi|240102129|ref|YP_002958437.1| - 0.017 15.6 8.1 0.021 15.3 6.2 1.9 2 0 0 2 2 2 0 Stigma-specific protein, Stig1 zf-trcl PF13451.6 gi|240102129|ref|YP_002958437.1| - 0.017 15.0 0.2 0.017 15.0 0.2 3.5 3 1 1 4 4 3 0 Probable zinc-ribbon domain Fer4_13 PF13370.6 gi|240102129|ref|YP_002958437.1| - 0.021 15.3 1.4 0.021 15.3 1.4 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I TFIIS_C PF01096.18 gi|240102129|ref|YP_002958437.1| - 0.032 14.1 0.1 0.032 14.1 0.1 3.7 4 0 0 4 4 3 0 Transcription factor S-II (TFIIS) Fer4_22 PF17179.4 gi|240102129|ref|YP_002958437.1| - 0.088 13.7 0.8 0.088 13.7 0.8 3.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain zinc-ribbon_6 PF10005.9 gi|240102129|ref|YP_002958437.1| - 0.19 12.4 8.0 0.33 11.7 0.0 3.2 2 2 0 3 3 3 0 zinc-ribbon domain Fer4_15 PF13459.6 gi|240102129|ref|YP_002958437.1| - 4 8.2 15.6 17 6.3 11.4 3.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain Mut7-C PF01927.16 gi|240102129|ref|YP_002958437.1| - 4.4 7.4 7.0 0.22 11.6 0.3 1.9 1 1 2 3 3 3 0 Mut7-C RNAse domain SCIFF PF13165.6 gi|240102129|ref|YP_002958437.1| - 4.6 7.2 10.4 0.71 9.8 0.3 2.8 3 0 0 3 3 3 0 Six-cysteine peptide SCIFF Fer4_18 PF13746.6 gi|240102129|ref|YP_002958437.1| - 5.5 7.2 9.4 26 5.0 7.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain ADH_N PF08240.12 gi|240102130|ref|YP_002958438.1| - 4.9e-33 113.3 2.5 9.2e-33 112.4 0.2 2.3 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|240102130|ref|YP_002958438.1| - 6.2e-26 90.9 0.3 9e-26 90.4 0.3 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|240102130|ref|YP_002958438.1| - 5.5e-11 42.3 0.2 9e-11 41.7 0.2 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|240102130|ref|YP_002958438.1| - 0.00029 21.9 0.0 0.00063 20.8 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 gi|240102130|ref|YP_002958438.1| - 0.0011 18.8 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated DAO PF01266.24 gi|240102130|ref|YP_002958438.1| - 0.0073 15.9 0.9 0.012 15.2 0.9 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|240102130|ref|YP_002958438.1| - 0.0077 15.6 0.1 0.013 14.9 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|240102130|ref|YP_002958438.1| - 0.0096 15.2 0.5 0.017 14.4 0.5 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|240102130|ref|YP_002958438.1| - 0.014 15.9 1.8 0.22 12.1 0.4 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|240102130|ref|YP_002958438.1| - 0.087 13.1 0.2 0.15 12.3 0.2 1.4 1 0 0 1 1 1 0 TrkA-N domain NAD_synthase PF02540.17 gi|240102131|ref|YP_002958439.1| - 4.9e-85 284.5 0.0 5.5e-85 284.3 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|240102131|ref|YP_002958439.1| - 2.2e-05 23.4 0.2 0.00015 20.7 0.1 2.3 3 1 0 3 3 3 1 tRNA methyl transferase QueC PF06508.13 gi|240102131|ref|YP_002958439.1| - 9e-05 22.1 0.0 0.035 13.6 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC HTH_23 PF13384.6 gi|240102131|ref|YP_002958439.1| - 0.0048 16.7 0.0 0.63 9.9 0.0 2.9 2 1 1 3 3 3 1 Homeodomain-like domain ThiI PF02568.14 gi|240102131|ref|YP_002958439.1| - 0.063 12.8 0.1 1.9 8.0 0.0 2.2 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) SASP PF00269.20 gi|240102131|ref|YP_002958439.1| - 0.095 12.7 0.1 0.67 10.0 0.0 2.4 3 0 0 3 3 3 0 Small, acid-soluble spore proteins, alpha/beta type Sigma70_r4 PF04545.16 gi|240102131|ref|YP_002958439.1| - 0.11 12.0 0.1 0.93 9.1 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 Asn_synthase PF00733.21 gi|240102131|ref|YP_002958439.1| - 0.12 12.0 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Sigma70_r3 PF04539.16 gi|240102131|ref|YP_002958439.1| - 0.12 12.4 0.8 0.39 10.8 0.1 2.0 2 0 0 2 2 2 0 Sigma-70 region 3 ATP_bind_3 PF01171.20 gi|240102131|ref|YP_002958439.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 2 0 0 2 2 2 0 PP-loop family TRAM PF01938.20 gi|240102132|ref|YP_002958440.1| - 3.6e-15 55.7 1.9 4.1e-15 55.5 1.9 1.1 1 0 0 1 1 1 1 TRAM domain ThiS PF02597.20 gi|240102133|ref|YP_002958441.1| - 3.1e-22 79.0 0.1 3.6e-22 78.8 0.1 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|240102133|ref|YP_002958441.1| - 0.00028 20.9 0.0 0.44 10.6 0.0 2.2 2 0 0 2 2 2 2 TGS domain Ub-Mut7C PF14451.6 gi|240102133|ref|YP_002958441.1| - 0.0017 18.2 0.1 0.11 12.4 0.0 2.2 2 0 0 2 2 2 1 Mut7-C ubiquitin Ub-RnfH PF03658.14 gi|240102133|ref|YP_002958441.1| - 0.012 16.0 0.0 0.016 15.6 0.0 1.3 1 0 0 1 1 1 0 RnfH family Ubiquitin SLBB PF10531.9 gi|240102133|ref|YP_002958441.1| - 0.028 14.3 0.1 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 SLBB domain Lambda_tail_I PF06805.12 gi|240102133|ref|YP_002958441.1| - 0.073 13.4 0.0 0.092 13.1 0.0 1.3 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I TrkA_C PF02080.21 gi|240102133|ref|YP_002958441.1| - 0.085 12.7 0.0 13 5.7 0.0 2.2 2 0 0 2 2 2 0 TrkA-C domain HTH_27 PF13463.6 gi|240102134|ref|YP_002958442.1| - 0.013 16.0 0.0 17 6.0 0.0 3.5 3 0 0 3 3 3 0 Winged helix DNA-binding domain Enolase_C PF00113.22 gi|240102135|ref|YP_002958443.1| - 1.8e-130 434.5 0.0 2.3e-130 434.1 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|240102135|ref|YP_002958443.1| - 2.5e-60 202.4 0.1 3.8e-60 201.8 0.1 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|240102135|ref|YP_002958443.1| - 5.8e-10 39.1 0.0 8.6e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|240102135|ref|YP_002958443.1| - 0.00056 19.1 0.0 0.0017 17.5 0.0 1.7 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus AA_permease_C PF13906.6 gi|240102136|ref|YP_002958444.1| - 0.81 9.8 11.6 8.9 6.5 2.7 3.8 3 1 0 3 3 3 0 C-terminus of AA_permease PadR PF03551.14 gi|240102137|ref|YP_002958445.1| - 7.5e-17 61.1 1.2 7.5e-17 61.1 1.2 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|240102137|ref|YP_002958445.1| - 2e-05 25.2 0.8 0.00023 21.8 0.0 2.1 1 1 1 2 2 2 1 Replication terminator protein HTH_34 PF13601.6 gi|240102137|ref|YP_002958445.1| - 0.00012 22.2 0.0 0.00025 21.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|240102137|ref|YP_002958445.1| - 0.0035 17.8 1.3 0.011 16.3 0.3 2.2 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|240102137|ref|YP_002958445.1| - 0.0042 17.0 1.3 0.018 15.0 0.1 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix Cdc6_C PF09079.11 gi|240102137|ref|YP_002958445.1| - 0.0075 16.2 0.1 0.016 15.2 0.1 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain TrmB PF01978.19 gi|240102137|ref|YP_002958445.1| - 0.035 14.0 0.2 0.14 12.1 0.1 2.1 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB BLACT_WH PF17778.1 gi|240102137|ref|YP_002958445.1| - 0.051 13.6 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain UBA PF00627.31 gi|240102137|ref|YP_002958445.1| - 0.15 12.0 0.1 0.33 10.9 0.1 1.5 1 0 0 1 1 1 0 UBA/TS-N domain MMPL PF03176.15 gi|240102138|ref|YP_002958446.1| - 6e-66 222.6 9.8 1.4e-37 129.4 0.9 3.1 3 0 0 3 3 3 2 MMPL family ACR_tran PF00873.19 gi|240102138|ref|YP_002958446.1| - 4.5e-08 31.3 2.8 4.5e-08 31.3 2.8 2.2 2 0 0 2 2 2 1 AcrB/AcrD/AcrF family Radical_SAM PF04055.21 gi|240102139|ref|YP_002958447.1| - 1e-14 55.2 0.9 3.4e-09 37.3 0.3 2.2 1 1 1 2 2 2 2 Radical SAM superfamily DUF1107 PF06526.12 gi|240102139|ref|YP_002958447.1| - 0.089 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1107) Peptidase_S24 PF00717.23 gi|240102140|ref|YP_002958448.1| - 0.12 12.3 0.3 0.48 10.4 0.1 2.2 2 0 0 2 2 2 0 Peptidase S24-like Peptidase_M20 PF01546.28 gi|240102143|ref|YP_002958451.1| - 3.2e-26 92.3 0.0 4.4e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|240102143|ref|YP_002958451.1| - 4.1e-12 46.0 0.1 8.4e-12 45.0 0.1 1.6 1 1 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|240102143|ref|YP_002958451.1| - 0.0022 17.7 0.0 0.0032 17.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 DUF553 PF04473.12 gi|240102144|ref|YP_002958452.1| - 9.9e-33 112.8 0.1 1.8e-30 105.5 0.1 2.2 1 1 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.19 gi|240102144|ref|YP_002958452.1| - 0.062 13.7 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 Transglutaminase-like superfamily FYVE PF01363.21 gi|240102145|ref|YP_002958453.1| - 0.11 12.7 0.2 0.16 12.2 0.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger DZR PF12773.7 gi|240102145|ref|YP_002958453.1| - 0.13 12.3 0.2 0.18 11.8 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF4776 PF16003.5 gi|240102145|ref|YP_002958453.1| - 0.14 11.1 0.3 0.17 10.8 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) zinc-ribbons_6 PF07191.12 gi|240102145|ref|YP_002958453.1| - 0.18 11.8 0.1 0.25 11.4 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons DUF5395 PF17373.2 gi|240102146|ref|YP_002958454.1| - 0.00043 20.9 0.0 0.00049 20.7 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5395) HicB_lk_antitox PF15919.5 gi|240102146|ref|YP_002958454.1| - 0.0049 17.0 0.0 0.0055 16.8 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Aldolase_II PF00596.21 gi|240102147|ref|YP_002958455.1| - 4.4e-49 167.0 0.0 4.9e-49 166.8 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain ApbA_C PF08546.11 gi|240102147|ref|YP_002958455.1| - 0.12 12.6 0.0 1.1 9.4 0.0 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA C terminal UPF0147 PF03685.13 gi|240102148|ref|YP_002958456.1| - 2.7e-33 113.9 2.9 2.9e-33 113.8 2.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) SBP_bac_3 PF00497.20 gi|240102149|ref|YP_002958457.1| - 5.5e-73 245.1 3.1 6.3e-73 244.9 3.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|240102149|ref|YP_002958457.1| - 2.6e-12 46.9 0.4 6e-12 45.7 0.4 1.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Lig_chan-Glu_bd PF10613.9 gi|240102149|ref|YP_002958457.1| - 6.3e-10 39.3 0.6 6.5e-09 36.0 0.2 2.5 2 1 0 2 2 2 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|240102149|ref|YP_002958457.1| - 1.4e-09 38.2 5.2 0.0007 19.6 1.1 3.1 1 1 1 2 2 2 2 NMT1/THI5 like OpuAC PF04069.12 gi|240102149|ref|YP_002958457.1| - 3.8e-06 26.7 5.8 0.0043 16.7 0.6 2.2 1 1 1 2 2 2 2 Substrate binding domain of ABC-type glycine betaine transport system Methyltransf_24 PF13578.6 gi|240102149|ref|YP_002958457.1| - 0.0038 18.2 0.0 0.91 10.6 0.0 2.4 1 1 1 2 2 2 1 Methyltransferase domain SBP_bac_11 PF13531.6 gi|240102149|ref|YP_002958457.1| - 0.048 13.4 0.2 2.2 8.0 0.2 2.1 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein Glyco_transf_4 PF13439.6 gi|240102149|ref|YP_002958457.1| - 0.18 11.8 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 BPD_transp_1 PF00528.22 gi|240102150|ref|YP_002958458.1| - 5.1e-20 72.0 14.0 5.1e-20 72.0 14.0 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Colicin_K PF17500.2 gi|240102150|ref|YP_002958458.1| - 0.52 10.9 0.2 0.52 10.9 0.2 2.4 2 2 0 2 2 2 0 Colicin-K ABC_tran PF00005.27 gi|240102151|ref|YP_002958459.1| - 4e-39 134.3 0.0 5.7e-39 133.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240102151|ref|YP_002958459.1| - 4e-14 53.1 0.4 1.3e-06 28.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240102151|ref|YP_002958459.1| - 8.3e-08 31.9 0.3 5.2e-07 29.3 0.3 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|240102151|ref|YP_002958459.1| - 6e-06 25.9 0.0 1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|240102151|ref|YP_002958459.1| - 4.3e-05 24.0 0.0 8.9e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|240102151|ref|YP_002958459.1| - 0.0002 21.1 0.1 0.0014 18.4 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|240102151|ref|YP_002958459.1| - 0.00026 20.8 0.0 0.064 13.0 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|240102151|ref|YP_002958459.1| - 0.0003 20.7 0.1 0.00067 19.6 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|240102151|ref|YP_002958459.1| - 0.00074 20.1 0.0 0.0016 19.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|240102151|ref|YP_002958459.1| - 0.001 18.0 0.2 1.2 7.9 0.0 2.6 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|240102151|ref|YP_002958459.1| - 0.01 15.5 0.0 0.029 13.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|240102151|ref|YP_002958459.1| - 0.012 15.8 0.1 0.048 13.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|240102151|ref|YP_002958459.1| - 0.028 14.6 0.0 0.41 10.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|240102151|ref|YP_002958459.1| - 0.029 14.6 0.2 0.57 10.5 0.2 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Adeno_IVa2 PF02456.15 gi|240102151|ref|YP_002958459.1| - 0.029 13.2 0.1 0.048 12.5 0.1 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein IstB_IS21 PF01695.17 gi|240102151|ref|YP_002958459.1| - 0.029 14.1 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.29 gi|240102151|ref|YP_002958459.1| - 0.042 14.3 0.2 0.73 10.3 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|240102151|ref|YP_002958459.1| - 0.053 12.2 0.0 1.3 7.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|240102151|ref|YP_002958459.1| - 0.11 12.8 0.1 0.71 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|240102151|ref|YP_002958459.1| - 0.14 12.7 0.0 0.34 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|240102151|ref|YP_002958459.1| - 0.16 12.0 0.3 0.42 10.7 0.1 2.0 2 2 0 2 2 2 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|240102151|ref|YP_002958459.1| - 0.18 11.5 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|240102153|ref|YP_002958461.1| - 2.1e-16 60.2 10.6 2.4e-16 60.0 10.6 1.0 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component CobA_CobO_BtuR PF02572.15 gi|240102154|ref|YP_002958462.1| - 1.9e-61 207.3 0.1 2.1e-61 207.2 0.1 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IstB_IS21 PF01695.17 gi|240102154|ref|YP_002958462.1| - 0.15 11.8 0.1 4.2 7.1 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|240102154|ref|YP_002958462.1| - 0.27 10.8 1.7 2.4 7.7 1.7 2.0 1 1 0 1 1 1 0 AAA domain DUF835 PF05763.12 gi|240102155|ref|YP_002958463.1| - 5.2e-33 113.7 0.0 8.8e-33 112.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF2079 PF09852.9 gi|240102155|ref|YP_002958463.1| - 0.026 13.4 3.6 0.033 13.0 3.6 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) 7TMR-DISM_7TM PF07695.11 gi|240102155|ref|YP_002958463.1| - 0.16 11.9 9.7 0.3 10.9 9.5 1.6 1 1 0 1 1 1 0 7TM diverse intracellular signalling Pox_A14 PF05767.12 gi|240102155|ref|YP_002958463.1| - 0.26 11.5 0.2 0.26 11.5 0.2 2.4 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 PGG PF13962.6 gi|240102155|ref|YP_002958463.1| - 2.8 7.8 6.2 0.41 10.5 1.7 1.8 2 0 0 2 2 2 0 Domain of unknown function TYW3 PF02676.14 gi|240102156|ref|YP_002958464.1| - 7.8e-38 130.0 0.0 1e-37 129.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 PIN PF01850.21 gi|240102157|ref|YP_002958465.1| - 0.00016 22.2 0.1 0.0002 21.8 0.1 1.0 1 0 0 1 1 1 1 PIN domain BPL_LplA_LipB PF03099.19 gi|240102160|ref|YP_002958468.1| - 1.5e-13 50.8 0.0 3.3e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Peptidase_S24 PF00717.23 gi|240102161|ref|YP_002958469.1| - 2.6e-06 27.3 0.2 3.6e-06 26.8 0.2 1.2 1 0 0 1 1 1 1 Peptidase S24-like DUF531 PF04407.12 gi|240102162|ref|YP_002958470.1| - 8.1e-76 253.9 0.0 9.2e-76 253.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.6 gi|240102162|ref|YP_002958470.1| - 0.095 12.1 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP TPR_12 PF13424.6 gi|240102163|ref|YP_002958471.1| - 7.3e-09 35.8 10.3 1.4e-07 31.7 1.4 4.6 4 1 1 5 5 5 1 Tetratricopeptide repeat SNAP PF14938.6 gi|240102163|ref|YP_002958471.1| - 0.00012 21.6 2.0 0.00012 21.6 2.0 1.8 2 0 0 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_16 PF13432.6 gi|240102163|ref|YP_002958471.1| - 0.0056 17.3 8.2 1.2 9.9 0.2 4.4 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|240102163|ref|YP_002958471.1| - 0.0089 15.4 0.8 0.1 11.9 0.0 2.7 2 1 1 3 3 3 1 MalT-like TPR region TPR_4 PF07721.14 gi|240102163|ref|YP_002958471.1| - 0.0097 16.4 2.1 6.8 7.6 0.0 3.9 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|240102163|ref|YP_002958471.1| - 0.058 13.9 5.9 2.6 8.6 0.0 4.5 3 2 1 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|240102163|ref|YP_002958471.1| - 0.063 13.2 0.9 2.2 8.3 0.1 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat PPR PF01535.20 gi|240102163|ref|YP_002958471.1| - 0.11 12.9 6.4 39 4.8 0.0 5.7 7 0 0 7 7 6 0 PPR repeat RPN7 PF10602.9 gi|240102163|ref|YP_002958471.1| - 0.13 12.0 1.9 17 5.1 0.3 3.3 2 1 1 3 3 3 0 26S proteasome subunit RPN7 DnaB_bind PF10410.9 gi|240102163|ref|YP_002958471.1| - 0.18 12.0 9.4 1.1 9.5 0.1 4.1 4 1 1 5 5 5 0 DnaB-helicase binding domain of primase TPR_8 PF13181.6 gi|240102163|ref|YP_002958471.1| - 0.3 11.4 4.5 7.6 7.0 0.1 4.6 5 0 0 5 5 5 0 Tetratricopeptide repeat Clathrin PF00637.20 gi|240102163|ref|YP_002958471.1| - 0.33 10.8 2.8 79 3.1 0.0 4.5 4 2 2 6 6 6 0 Region in Clathrin and VPS TPR_2 PF07719.17 gi|240102163|ref|YP_002958471.1| - 0.53 10.5 16.8 2.8 8.3 0.0 6.2 7 0 0 7 7 7 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|240102163|ref|YP_002958471.1| - 2.2 9.3 11.7 6.4 7.9 0.1 5.6 4 2 2 6 6 6 0 Tetratricopeptide repeat Peptidase_M19 PF01244.21 gi|240102164|ref|YP_002958472.1| - 1.6e-88 297.0 0.0 1.8e-88 296.8 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Neural_ProG_Cyt PF06567.11 gi|240102164|ref|YP_002958472.1| - 0.075 13.3 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Neural chondroitin sulphate proteoglycan cytoplasmic domain DUF257 PF03192.13 gi|240102165|ref|YP_002958473.1| - 1.1e-44 152.7 0.1 2.3e-25 89.6 0.4 2.0 1 1 1 2 2 2 2 Pyrococcus protein of unknown function, DUF257 HycI PF01750.18 gi|240102165|ref|YP_002958473.1| - 5.5e-05 23.0 0.3 0.36 10.7 0.0 3.7 4 0 0 4 4 4 2 Hydrogenase maturation protease ATPase PF06745.13 gi|240102166|ref|YP_002958474.1| - 3.2e-46 157.6 0.0 3.8e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|240102166|ref|YP_002958474.1| - 1.3e-09 37.9 0.0 2.6e-09 36.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|240102166|ref|YP_002958474.1| - 6.1e-08 32.3 0.0 7.3e-05 22.2 0.0 2.2 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|240102166|ref|YP_002958474.1| - 2.2e-06 26.6 0.0 3e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.6 gi|240102166|ref|YP_002958474.1| - 9.7e-05 22.4 0.0 0.00025 21.1 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|240102166|ref|YP_002958474.1| - 0.00012 21.9 0.1 0.0023 17.7 0.1 2.4 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|240102166|ref|YP_002958474.1| - 0.00014 21.1 0.0 0.0037 16.4 0.0 2.1 2 0 0 2 2 2 1 PAXNEB protein RecA PF00154.21 gi|240102166|ref|YP_002958474.1| - 0.00028 20.4 0.0 0.00041 19.9 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase_2 PF01637.18 gi|240102166|ref|YP_002958474.1| - 0.00095 19.1 0.0 0.0014 18.6 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Rad51 PF08423.11 gi|240102166|ref|YP_002958474.1| - 0.0012 18.2 0.2 0.022 14.0 0.0 2.3 3 0 0 3 3 3 1 Rad51 DUF2075 PF09848.9 gi|240102166|ref|YP_002958474.1| - 0.0017 17.7 0.0 0.0023 17.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|240102166|ref|YP_002958474.1| - 0.0049 17.2 0.1 0.0056 17.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|240102166|ref|YP_002958474.1| - 0.0067 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|240102166|ref|YP_002958474.1| - 0.0078 16.0 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein T2SSE PF00437.20 gi|240102166|ref|YP_002958474.1| - 0.011 14.8 0.0 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|240102166|ref|YP_002958474.1| - 0.013 16.1 0.1 0.033 14.7 0.1 1.9 1 1 1 2 2 2 0 AAA domain Citrate_ly_lig PF08218.11 gi|240102166|ref|YP_002958474.1| - 0.015 15.0 0.0 5.7 6.6 0.0 2.2 2 0 0 2 2 2 0 Citrate lyase ligase C-terminal domain AAA_16 PF13191.6 gi|240102166|ref|YP_002958474.1| - 0.021 15.2 0.0 0.029 14.7 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|240102166|ref|YP_002958474.1| - 0.022 14.5 0.1 0.041 13.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|240102166|ref|YP_002958474.1| - 0.024 14.4 0.1 0.043 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|240102166|ref|YP_002958474.1| - 0.026 13.7 0.0 0.041 13.1 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_22 PF13401.6 gi|240102166|ref|YP_002958474.1| - 0.037 14.3 0.0 0.085 13.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|240102166|ref|YP_002958474.1| - 0.041 14.4 0.0 0.071 13.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter RsmJ PF04378.13 gi|240102166|ref|YP_002958474.1| - 0.043 13.0 0.0 0.092 12.0 0.0 1.5 2 0 0 2 2 2 0 Ribosomal RNA large subunit methyltransferase D, RlmJ AAA_5 PF07728.14 gi|240102166|ref|YP_002958474.1| - 0.054 13.5 0.0 0.18 11.8 0.0 1.8 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|240102166|ref|YP_002958474.1| - 0.069 13.3 0.1 0.19 11.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain Ferritin_2 PF13668.6 gi|240102166|ref|YP_002958474.1| - 0.074 13.3 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Ferritin-like domain NTPase_1 PF03266.15 gi|240102166|ref|YP_002958474.1| - 0.082 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_11 PF13086.6 gi|240102166|ref|YP_002958474.1| - 0.14 11.9 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|240102166|ref|YP_002958474.1| - 0.29 11.6 0.6 0.59 10.6 0.6 1.4 1 0 0 1 1 1 0 AAA domain Methyltransf_25 PF13649.6 gi|240102167|ref|YP_002958475.1| - 1e-09 39.0 0.0 1.7e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240102167|ref|YP_002958475.1| - 1.2e-09 38.7 0.0 2.2e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|240102167|ref|YP_002958475.1| - 7.7e-08 32.2 0.0 1.2e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|240102167|ref|YP_002958475.1| - 1.8e-07 31.1 0.0 2.4e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240102167|ref|YP_002958475.1| - 2.7e-07 30.5 0.0 4.2e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|240102167|ref|YP_002958475.1| - 3.7e-07 29.8 0.0 5.4e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Spermine_synth PF01564.17 gi|240102167|ref|YP_002958475.1| - 5.7e-07 29.1 0.0 9.1e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Ubie_methyltran PF01209.18 gi|240102167|ref|YP_002958475.1| - 8.3e-06 25.3 0.0 0.00016 21.1 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|240102167|ref|YP_002958475.1| - 1.7e-05 24.4 0.0 2.5e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.18 gi|240102167|ref|YP_002958475.1| - 3.6e-05 23.6 0.0 0.0018 18.0 0.0 2.4 2 0 0 2 2 2 1 DNA methylase Methyltransf_30 PF05430.11 gi|240102167|ref|YP_002958475.1| - 6.3e-05 22.8 0.0 0.00011 22.1 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Met_10 PF02475.16 gi|240102167|ref|YP_002958475.1| - 8.3e-05 22.4 0.0 0.00014 21.6 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_24 PF13578.6 gi|240102167|ref|YP_002958475.1| - 0.0006 20.8 0.0 0.0012 19.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|240102167|ref|YP_002958475.1| - 0.0036 17.0 0.0 0.006 16.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_3 PF01596.17 gi|240102167|ref|YP_002958475.1| - 0.0066 15.7 0.0 0.0098 15.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase SAM_MT PF04445.13 gi|240102167|ref|YP_002958475.1| - 0.018 14.5 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase N6_Mtase PF02384.16 gi|240102167|ref|YP_002958475.1| - 0.025 13.8 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase RrnaAD PF00398.20 gi|240102167|ref|YP_002958475.1| - 0.045 12.8 0.0 0.065 12.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltr_RsmB-F PF01189.17 gi|240102167|ref|YP_002958475.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F YdjM PF04307.14 gi|240102168|ref|YP_002958476.1| - 1.5e-12 47.2 2.8 3.1e-07 29.9 1.1 2.2 2 0 0 2 2 2 2 LexA-binding, inner membrane-associated putative hydrolase tRNA_anti-codon PF01336.25 gi|240102168|ref|YP_002958476.1| - 0.0025 17.8 1.7 0.042 13.8 1.7 2.3 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|240102168|ref|YP_002958476.1| - 0.08 13.2 0.1 0.22 11.8 0.1 1.6 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain GIDE PF12483.8 gi|240102168|ref|YP_002958476.1| - 0.09 12.2 0.1 0.26 10.7 0.1 1.9 2 0 0 2 2 2 0 E3 Ubiquitin ligase TctA PF01970.16 gi|240102169|ref|YP_002958477.1| - 1.1e-50 172.5 41.0 1.3e-50 172.3 41.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family tRNA_anti-codon PF01336.25 gi|240102170|ref|YP_002958478.1| - 1.4e-19 69.9 16.1 1.8e-06 27.8 0.9 5.8 6 0 0 6 6 6 4 OB-fold nucleic acid binding domain DUF4539 PF15072.6 gi|240102170|ref|YP_002958478.1| - 0.00029 20.8 0.2 10 6.2 0.0 4.6 4 0 0 4 4 4 1 Domain of unknown function (DUF4539) CcmE PF03100.15 gi|240102170|ref|YP_002958478.1| - 0.00087 19.3 2.5 0.0025 17.8 0.1 2.9 4 1 1 5 5 5 1 CcmE RMI1_C PF16099.5 gi|240102170|ref|YP_002958478.1| - 0.0033 17.3 0.3 0.6 9.9 0.0 3.3 3 0 0 3 3 3 1 Recq-mediated genome instability protein 1, C-terminal OB-fold DUF4131 PF13567.6 gi|240102170|ref|YP_002958478.1| - 0.0057 16.3 5.1 0.14 11.8 0.0 4.1 5 0 0 5 5 5 1 Domain of unknown function (DUF4131) BOF PF04076.13 gi|240102170|ref|YP_002958478.1| - 0.02 15.0 4.4 1.6 8.8 0.2 3.4 4 0 0 4 4 4 0 Bacterial OB fold (BOF) protein FLgD_tudor PF13861.6 gi|240102170|ref|YP_002958478.1| - 0.17 12.2 6.2 11 6.3 0.0 5.1 3 3 1 4 4 4 0 FlgD Tudor-like domain MCM_OB PF17207.3 gi|240102170|ref|YP_002958478.1| - 5.7 6.8 6.4 9.2 6.1 0.1 3.9 5 0 0 5 5 5 0 MCM OB domain tRNA_anti-codon PF01336.25 gi|240102171|ref|YP_002958479.1| - 8.1e-17 61.0 7.2 1e-05 25.4 0.3 4.3 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|240102171|ref|YP_002958479.1| - 3.5e-08 33.5 0.8 0.031 14.5 0.0 3.6 3 1 1 4 4 4 3 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.7 gi|240102171|ref|YP_002958479.1| - 8.2e-05 22.3 12.8 0.05 13.2 1.3 4.1 3 1 0 3 3 3 2 tRNA_anti-like DUF4539 PF15072.6 gi|240102171|ref|YP_002958479.1| - 0.00055 19.9 0.1 7 6.8 0.0 3.5 2 1 1 3 3 3 2 Domain of unknown function (DUF4539) Mucin PF01456.17 gi|240102171|ref|YP_002958479.1| - 0.0063 16.5 23.6 0.0063 16.5 23.6 2.6 3 0 0 3 3 3 1 Mucin-like glycoprotein DUF4431 PF14485.6 gi|240102171|ref|YP_002958479.1| - 0.041 13.7 0.4 4.2 7.2 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4431) DUF4834 PF16118.5 gi|240102171|ref|YP_002958479.1| - 0.088 13.8 0.9 0.32 12.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4834) HIN PF02760.15 gi|240102171|ref|YP_002958479.1| - 0.11 12.2 0.3 1.7 8.3 0.2 2.5 2 0 0 2 2 2 0 HIN-200/IF120x domain Shisa PF13908.6 gi|240102171|ref|YP_002958479.1| - 0.68 10.2 10.3 0.094 13.0 2.2 2.2 2 0 0 2 2 2 0 Wnt and FGF inhibitory regulator SSP160 PF06933.11 gi|240102171|ref|YP_002958479.1| - 1.2 7.3 32.4 0.097 10.9 12.9 2.2 2 0 0 2 2 2 0 Special lobe-specific silk protein SSP160 AJAP1_PANP_C PF15298.6 gi|240102171|ref|YP_002958479.1| - 3.2 7.9 26.6 4.2 7.6 5.6 2.5 2 0 0 2 2 2 0 AJAP1/PANP C-terminus Peptidase_S9 PF00326.21 gi|240102172|ref|YP_002958480.1| - 9.9e-53 178.8 0.0 1.4e-52 178.3 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|240102172|ref|YP_002958480.1| - 4.5e-11 42.9 0.0 9.5e-08 32.0 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 gi|240102172|ref|YP_002958480.1| - 9.6e-07 27.8 0.9 0.00062 18.5 0.9 3.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.8 gi|240102172|ref|YP_002958480.1| - 5.9e-05 22.4 0.0 0.0038 16.5 0.1 2.2 2 0 0 2 2 2 1 Serine aminopeptidase, S33 DLH PF01738.18 gi|240102172|ref|YP_002958480.1| - 6.7e-05 22.5 0.0 0.00022 20.9 0.0 1.7 2 1 0 2 2 2 1 Dienelactone hydrolase family PD40 PF07676.12 gi|240102172|ref|YP_002958480.1| - 0.00048 20.0 0.1 0.0026 17.7 0.0 2.3 2 0 0 2 2 2 1 WD40-like Beta Propeller Repeat Abhydrolase_1 PF00561.20 gi|240102172|ref|YP_002958480.1| - 0.001 18.8 0.0 0.0054 16.4 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.16 gi|240102172|ref|YP_002958480.1| - 0.0014 18.5 0.0 0.53 10.1 0.0 3.0 2 1 0 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_6 PF12697.7 gi|240102172|ref|YP_002958480.1| - 0.006 17.2 0.0 0.013 16.1 0.0 1.6 2 0 0 2 2 2 1 Alpha/beta hydrolase family PAF-AH_p_II PF03403.13 gi|240102172|ref|YP_002958480.1| - 0.19 10.2 0.0 3.4 6.1 0.0 2.2 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II BAAT_C PF08840.11 gi|240102172|ref|YP_002958480.1| - 0.21 11.5 0.0 3.5 7.5 0.0 2.3 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal COesterase PF00135.28 gi|240102172|ref|YP_002958480.1| - 0.21 10.4 0.2 0.42 9.4 0.1 1.4 2 0 0 2 2 2 0 Carboxylesterase family DUF1056 PF06341.11 gi|240102173|ref|YP_002958481.1| - 0.043 14.1 0.7 0.064 13.6 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1056) PRA1 PF03208.19 gi|240102173|ref|YP_002958481.1| - 0.06 13.0 1.7 0.076 12.6 1.7 1.2 1 0 0 1 1 1 0 PRA1 family protein DUF2715 PF10895.8 gi|240102173|ref|YP_002958481.1| - 0.088 12.4 0.4 0.097 12.3 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF2715) AcrZ PF10766.9 gi|240102173|ref|YP_002958481.1| - 2.2 7.9 9.9 9.5 5.9 0.7 3.3 3 0 0 3 3 3 0 Multidrug efflux pump-associated protein AcrZ APH PF01636.23 gi|240102174|ref|YP_002958482.1| - 0.0032 17.4 0.1 0.018 15.0 0.0 2.0 1 1 0 2 2 2 1 Phosphotransferase enzyme family Ribo_biogen_C PF04034.13 gi|240102174|ref|YP_002958482.1| - 0.074 12.8 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosome biogenesis protein, C-terminal AsnC_trans_reg PF01037.21 gi|240102175|ref|YP_002958483.1| - 2.5e-19 69.0 0.4 2.7e-19 68.9 0.4 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Spore_YhcN_YlaJ PF09580.10 gi|240102175|ref|YP_002958483.1| - 0.00095 19.3 0.1 0.0012 19.0 0.1 1.2 1 0 0 1 1 1 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) HMA PF00403.26 gi|240102175|ref|YP_002958483.1| - 0.0017 18.8 0.1 0.002 18.5 0.1 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain NapD PF03927.13 gi|240102175|ref|YP_002958483.1| - 0.0061 16.6 0.2 0.0069 16.4 0.2 1.1 1 0 0 1 1 1 1 NapD protein GYD PF08734.11 gi|240102175|ref|YP_002958483.1| - 0.017 15.1 1.1 0.044 13.7 0.9 1.8 1 1 1 2 2 2 0 GYD domain PhoU_div PF01865.16 gi|240102176|ref|YP_002958484.1| - 2.3e-46 157.8 7.3 2.6e-46 157.7 7.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|240102176|ref|YP_002958484.1| - 1.4e-06 28.7 10.5 0.00014 22.3 1.9 2.7 2 1 0 2 2 2 2 PhoU domain MIP-T3_C PF17749.1 gi|240102176|ref|YP_002958484.1| - 0.0091 16.0 1.2 0.021 14.8 0.1 2.1 2 1 0 2 2 2 1 Microtubule-binding protein MIP-T3 C-terminal region DUF2610 PF11020.8 gi|240102176|ref|YP_002958484.1| - 0.065 13.1 0.0 0.23 11.4 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF2610) DUF4128 PF13554.6 gi|240102176|ref|YP_002958484.1| - 0.11 12.5 0.0 0.59 10.2 0.0 1.9 2 0 0 2 2 2 0 Bacteriophage related domain of unknown function PHO4 PF01384.20 gi|240102177|ref|YP_002958485.1| - 5.4e-110 367.6 35.4 6.7e-110 367.3 35.4 1.1 1 0 0 1 1 1 1 Phosphate transporter family Ytca PF17090.5 gi|240102177|ref|YP_002958485.1| - 0.035 14.6 7.6 0.059 13.9 0.0 3.8 4 0 0 4 4 4 0 Uncharacterised protein family HTH_IclR PF09339.10 gi|240102177|ref|YP_002958485.1| - 0.065 13.0 0.0 3 7.7 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain Myc_target_1 PF15179.6 gi|240102177|ref|YP_002958485.1| - 2.3 8.1 6.4 9.6 6.1 0.5 2.3 2 0 0 2 2 2 0 Myc target protein 1 CoA_binding_3 PF13727.6 gi|240102177|ref|YP_002958485.1| - 4.3 7.3 12.2 6.7 6.7 2.1 2.9 2 1 0 2 2 2 0 CoA-binding domain AA_kinase PF00696.28 gi|240102178|ref|YP_002958486.1| - 7.9e-32 110.8 0.1 1.2e-31 110.1 0.1 1.3 1 1 0 1 1 1 1 Amino acid kinase family SKI PF01202.22 gi|240102178|ref|YP_002958486.1| - 0.028 14.6 0.1 4.3 7.4 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase Fur_reg_FbpA PF13076.6 gi|240102178|ref|YP_002958486.1| - 0.3 10.8 1.6 1 9.1 0.1 2.3 2 0 0 2 2 2 0 Fur-regulated basic protein A Amino_oxidase PF01593.24 gi|240102179|ref|YP_002958487.1| - 5e-15 55.7 0.2 1.4e-14 54.3 0.2 1.8 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|240102179|ref|YP_002958487.1| - 1.4e-12 47.6 0.3 6.4e-12 45.5 0.3 2.0 1 1 1 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|240102179|ref|YP_002958487.1| - 2.4e-11 43.4 0.8 3.7e-06 26.4 0.0 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|240102179|ref|YP_002958487.1| - 1.6e-08 34.6 1.0 6.5e-08 32.5 1.0 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|240102179|ref|YP_002958487.1| - 1.4e-05 24.4 0.1 2.5e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|240102179|ref|YP_002958487.1| - 1.4e-05 25.5 2.5 0.011 16.3 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|240102179|ref|YP_002958487.1| - 0.00034 20.0 0.3 0.00094 18.5 0.2 1.8 3 0 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.7 gi|240102179|ref|YP_002958487.1| - 0.00041 19.8 0.1 0.0037 16.7 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|240102179|ref|YP_002958487.1| - 0.00058 18.7 0.6 0.0017 17.1 0.2 1.8 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|240102179|ref|YP_002958487.1| - 0.022 14.0 0.2 0.038 13.2 0.2 1.3 1 0 0 1 1 1 0 Thi4 family Glyco_hydro_43 PF04616.14 gi|240102179|ref|YP_002958487.1| - 0.091 12.1 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 43 Pyr_redox_3 PF13738.6 gi|240102179|ref|YP_002958487.1| - 0.1 11.8 0.3 0.4 9.9 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|240102179|ref|YP_002958487.1| - 0.17 12.1 0.2 32 4.8 0.2 2.7 3 0 0 3 3 3 0 TrkA-N domain AFOR_N PF02730.15 gi|240102180|ref|YP_002958488.1| - 1.9e-39 135.6 0.0 5.7e-39 134.1 0.0 1.8 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|240102180|ref|YP_002958488.1| - 1.4e-17 63.8 0.0 2.6e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 FBPase_3 PF01950.16 gi|240102181|ref|YP_002958489.1| - 2.7e-187 622.3 0.0 3.1e-187 622.1 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Biotin_lipoyl PF00364.22 gi|240102181|ref|YP_002958489.1| - 0.14 12.0 0.1 1.8 8.4 0.0 2.4 1 1 1 2 2 2 0 Biotin-requiring enzyme AHJR-like PF18743.1 gi|240102182|ref|YP_002958490.1| - 0.085 12.4 0.3 0.11 12.1 0.3 1.2 1 0 0 1 1 1 0 REase_AHJR-like Prok-RING_1 PF14446.6 gi|240102183|ref|YP_002958491.1| - 0.004 17.1 0.4 0.0056 16.6 0.4 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Rad50_zn_hook PF04423.14 gi|240102183|ref|YP_002958491.1| - 0.023 14.5 0.2 0.048 13.5 0.2 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif TackOD1 PF18551.1 gi|240102183|ref|YP_002958491.1| - 0.025 14.3 0.2 0.038 13.7 0.2 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 TF_Zn_Ribbon PF08271.12 gi|240102183|ref|YP_002958491.1| - 0.032 13.8 1.8 0.3 10.7 1.8 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.20 gi|240102183|ref|YP_002958491.1| - 0.035 14.1 0.7 2 8.5 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.11 gi|240102183|ref|YP_002958491.1| - 0.072 13.0 0.7 0.14 12.1 0.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|240102183|ref|YP_002958491.1| - 0.081 13.0 0.3 0.13 12.3 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2_3 PF13878.6 gi|240102183|ref|YP_002958491.1| - 0.25 11.2 0.8 0.79 9.6 0.0 1.9 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Auto_anti-p27 PF06677.12 gi|240102183|ref|YP_002958491.1| - 0.48 10.6 2.1 1 9.6 2.1 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|240102183|ref|YP_002958491.1| - 0.81 9.8 3.0 1.6 8.8 3.0 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain PolC_DP2 PF03833.13 gi|240102184|ref|YP_002958492.1| - 0 1203.2 0.1 0 1201.9 0.0 1.6 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|240102184|ref|YP_002958492.1| - 2.2e-14 53.5 1.0 7.9e-14 51.8 1.0 2.0 1 0 0 1 1 1 1 Intein splicing domain HypA PF01155.19 gi|240102184|ref|YP_002958492.1| - 0.004 17.1 11.1 0.31 11.1 0.1 3.6 2 1 1 3 3 3 3 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|240102184|ref|YP_002958492.1| - 0.006 16.5 9.2 0.27 11.2 0.0 3.0 2 1 0 2 2 2 1 zinc-ribbons DZR PF12773.7 gi|240102184|ref|YP_002958492.1| - 0.032 14.2 14.8 0.86 9.7 0.6 2.7 2 1 0 2 2 2 0 Double zinc ribbon TackOD1 PF18551.1 gi|240102184|ref|YP_002958492.1| - 0.074 12.7 8.0 0.088 12.5 3.6 2.3 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 HNH_5 PF14279.6 gi|240102184|ref|YP_002958492.1| - 0.18 11.7 0.6 1.8 8.5 0.0 2.5 2 0 0 2 2 2 0 HNH endonuclease zf-CHY PF05495.12 gi|240102184|ref|YP_002958492.1| - 2.2 8.8 7.4 28 5.3 4.4 2.6 2 0 0 2 2 2 0 CHY zinc finger zf-HIT PF04438.16 gi|240102184|ref|YP_002958492.1| - 5.7 6.9 20.3 0.16 11.9 1.1 4.8 5 0 0 5 5 5 0 HIT zinc finger Anti-TRAP PF15777.5 gi|240102184|ref|YP_002958492.1| - 9.2 6.3 15.8 0.4 10.7 0.6 3.4 2 1 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein DNA_pol_E_B PF04042.16 gi|240102185|ref|YP_002958493.1| - 5.1e-17 61.9 0.0 7.6e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|240102185|ref|YP_002958493.1| - 2.3e-12 47.9 0.3 4e-12 47.1 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|240102185|ref|YP_002958493.1| - 0.00025 21.3 0.0 0.00069 19.8 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|240102185|ref|YP_002958493.1| - 0.00028 20.8 0.1 0.00065 19.6 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.7 gi|240102185|ref|YP_002958493.1| - 0.037 13.7 0.0 0.079 12.6 0.0 1.5 1 0 0 1 1 1 0 tRNA_anti-like Cdc6_C PF09079.11 gi|240102186|ref|YP_002958494.1| - 1.6e-26 92.1 0.2 1.3e-25 89.1 0.0 2.6 3 0 0 3 3 3 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|240102186|ref|YP_002958494.1| - 6.3e-11 42.9 0.1 1.8e-09 38.2 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|240102186|ref|YP_002958494.1| - 5.5e-10 39.8 0.1 2e-09 37.9 0.1 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|240102186|ref|YP_002958494.1| - 3.4e-09 37.1 0.0 9.3e-09 35.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|240102186|ref|YP_002958494.1| - 9.7e-07 28.4 0.0 2.1e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|240102186|ref|YP_002958494.1| - 9.8e-06 25.6 5.7 1.4e-05 25.1 4.0 2.1 2 1 0 2 2 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|240102186|ref|YP_002958494.1| - 0.0003 20.1 0.1 0.00053 19.3 0.1 1.4 1 0 0 1 1 1 1 NB-ARC domain DUF815 PF05673.13 gi|240102186|ref|YP_002958494.1| - 0.00079 18.7 0.2 0.0024 17.1 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) DEAD PF00270.29 gi|240102186|ref|YP_002958494.1| - 0.00092 19.0 1.4 0.24 11.1 1.4 2.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase KAP_NTPase PF07693.14 gi|240102186|ref|YP_002958494.1| - 0.0012 18.2 0.6 0.11 11.7 0.0 2.3 1 1 0 2 2 2 1 KAP family P-loop domain Microtub_bd PF16796.5 gi|240102186|ref|YP_002958494.1| - 0.0015 18.4 0.0 0.0043 17.0 0.0 1.8 1 0 0 1 1 1 1 Microtubule binding Kinesin PF00225.23 gi|240102186|ref|YP_002958494.1| - 0.0024 16.9 0.0 0.0039 16.2 0.0 1.3 1 0 0 1 1 1 1 Kinesin motor domain DUF2075 PF09848.9 gi|240102186|ref|YP_002958494.1| - 0.0039 16.5 0.0 0.0059 15.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|240102186|ref|YP_002958494.1| - 0.0056 16.4 0.3 0.011 15.4 0.3 1.5 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|240102186|ref|YP_002958494.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_32 PF13654.6 gi|240102186|ref|YP_002958494.1| - 0.012 14.5 1.6 0.083 11.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|240102186|ref|YP_002958494.1| - 0.013 15.7 0.0 0.066 13.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.26 gi|240102186|ref|YP_002958494.1| - 0.014 15.1 0.0 0.072 12.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_assoc_2 PF16193.5 gi|240102186|ref|YP_002958494.1| - 0.019 15.3 0.1 0.062 13.6 0.1 1.9 1 0 0 1 1 1 0 AAA C-terminal domain NACHT PF05729.12 gi|240102186|ref|YP_002958494.1| - 0.037 13.9 0.0 0.11 12.5 0.0 1.8 1 1 0 1 1 1 0 NACHT domain Thioredoxin_8 PF13905.6 gi|240102186|ref|YP_002958494.1| - 0.038 14.3 0.8 5.9 7.3 0.2 2.7 1 1 0 2 2 2 0 Thioredoxin-like ABC_tran PF00005.27 gi|240102186|ref|YP_002958494.1| - 0.045 14.3 0.0 0.17 12.4 0.0 2.0 2 1 1 3 3 2 0 ABC transporter PIF1 PF05970.14 gi|240102186|ref|YP_002958494.1| - 0.046 12.9 0.0 0.086 12.0 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase DUF166 PF02593.14 gi|240102186|ref|YP_002958494.1| - 0.049 13.2 0.8 0.34 10.4 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function T2SSE PF00437.20 gi|240102186|ref|YP_002958494.1| - 0.055 12.5 0.0 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF853 PF05872.12 gi|240102186|ref|YP_002958494.1| - 0.058 12.0 0.0 0.11 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) ResIII PF04851.15 gi|240102186|ref|YP_002958494.1| - 0.066 13.2 0.1 0.24 11.4 0.1 2.0 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|240102186|ref|YP_002958494.1| - 0.075 13.4 0.0 0.25 11.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|240102186|ref|YP_002958494.1| - 0.096 11.9 0.1 0.35 10.1 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_lid_10 PF17872.1 gi|240102186|ref|YP_002958494.1| - 0.099 12.8 0.2 1.9 8.7 0.0 2.5 2 0 0 2 2 2 0 AAA lid domain DUF87 PF01935.17 gi|240102186|ref|YP_002958494.1| - 0.15 12.2 1.7 0.74 9.9 0.4 2.4 1 1 0 2 2 2 0 Helicase HerA, central domain Ion_trans_2 PF07885.16 gi|240102187|ref|YP_002958495.1| - 2.6e-17 62.5 9.7 4.6e-17 61.8 9.7 1.4 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.18 gi|240102187|ref|YP_002958495.1| - 2.8e-17 63.0 0.2 5.2e-17 62.2 0.2 1.5 1 0 0 1 1 1 1 TrkA-N domain Ion_trans PF00520.31 gi|240102187|ref|YP_002958495.1| - 4.8e-08 32.5 2.5 8.5e-08 31.7 2.5 1.3 1 0 0 1 1 1 1 Ion transport protein MobB PF03205.14 gi|240102187|ref|YP_002958495.1| - 0.013 15.4 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NAD_binding_10 PF13460.6 gi|240102187|ref|YP_002958495.1| - 0.13 12.2 0.5 0.28 11.1 0.4 1.6 1 1 0 1 1 1 0 NAD(P)H-binding DUF5449 PF17528.2 gi|240102187|ref|YP_002958495.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5449) DUF2721 PF11026.8 gi|240102187|ref|YP_002958495.1| - 0.87 9.5 10.3 0.054 13.4 1.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) Rad51 PF08423.11 gi|240102188|ref|YP_002958496.1| - 1.3e-93 312.9 0.0 1.6e-93 312.6 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|240102188|ref|YP_002958496.1| - 3e-14 53.1 0.1 4.7e-14 52.5 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|240102188|ref|YP_002958496.1| - 3.8e-12 46.6 4.4 4.1e-12 46.5 2.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_25 PF13481.6 gi|240102188|ref|YP_002958496.1| - 1e-08 35.0 0.0 1.6e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|240102188|ref|YP_002958496.1| - 2.2e-08 33.7 0.5 3.6e-08 33.0 0.0 1.7 2 1 0 2 2 2 1 KaiC Cdd1 PF11731.8 gi|240102188|ref|YP_002958496.1| - 3e-06 27.4 0.0 6.8e-06 26.2 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.23 gi|240102188|ref|YP_002958496.1| - 1.4e-05 24.7 3.3 0.0012 18.7 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|240102188|ref|YP_002958496.1| - 2.3e-05 24.4 0.8 8.7e-05 22.6 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_22 PF13401.6 gi|240102188|ref|YP_002958496.1| - 0.00086 19.6 0.0 0.0021 18.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain DNA_pol_lambd_f PF10391.9 gi|240102188|ref|YP_002958496.1| - 0.0013 18.5 0.0 0.0049 16.7 0.0 2.1 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.8 gi|240102188|ref|YP_002958496.1| - 0.0028 17.9 0.1 0.037 14.4 0.0 2.8 3 0 0 3 3 2 1 IMS family HHH motif DUF4332 PF14229.6 gi|240102188|ref|YP_002958496.1| - 0.0036 17.5 0.2 0.038 14.2 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4332) AAA_18 PF13238.6 gi|240102188|ref|YP_002958496.1| - 0.0058 17.2 0.0 0.014 16.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|240102188|ref|YP_002958496.1| - 0.0085 15.8 0.0 0.025 14.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|240102188|ref|YP_002958496.1| - 0.021 15.3 0.1 0.063 13.8 0.0 1.8 2 0 0 2 2 2 0 ABC transporter HHH_8 PF14716.6 gi|240102188|ref|YP_002958496.1| - 0.031 14.6 4.2 0.13 12.6 0.1 3.0 3 0 0 3 3 3 0 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|240102188|ref|YP_002958496.1| - 0.032 14.5 1.1 14 6.0 0.1 3.0 3 1 0 3 3 3 0 Helix-hairpin-helix motif BAF PF02961.14 gi|240102188|ref|YP_002958496.1| - 0.041 14.3 0.2 0.15 12.5 0.0 2.1 2 0 0 2 2 1 0 Barrier to autointegration factor PAXNEB PF05625.11 gi|240102188|ref|YP_002958496.1| - 0.085 12.0 0.9 0.2 10.8 0.2 1.8 2 0 0 2 2 2 0 PAXNEB protein Surface_antigen PF11054.8 gi|240102188|ref|YP_002958496.1| - 0.16 11.6 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 Sporozoite TA4 surface antigen NucS PF01939.16 gi|240102189|ref|YP_002958497.1| - 5.3e-82 274.6 0.1 5.9e-82 274.4 0.1 1.0 1 0 0 1 1 1 1 Endonuclease NucS HSDR_N PF04313.14 gi|240102189|ref|YP_002958497.1| - 0.095 12.6 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) B_lectin PF01453.24 gi|240102189|ref|YP_002958497.1| - 0.15 12.6 0.0 25 5.5 0.0 2.2 2 0 0 2 2 2 0 D-mannose binding lectin DUF473 PF04322.12 gi|240102190|ref|YP_002958498.1| - 5.5e-31 106.9 0.1 6.3e-31 106.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.9 gi|240102191|ref|YP_002958499.1| - 1.5e-44 152.6 0.0 1.7e-44 152.4 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PNP_UDP_1 PF01048.20 gi|240102193|ref|YP_002958501.1| - 1.6e-48 165.0 0.0 2e-48 164.7 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily SNase PF00565.17 gi|240102194|ref|YP_002958502.1| - 2.2e-10 41.0 0.0 3.4e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Amidohydro_1 PF01979.20 gi|240102195|ref|YP_002958503.1| - 6.8e-77 259.1 0.3 8.1e-77 258.8 0.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|240102195|ref|YP_002958503.1| - 8e-23 81.6 1.7 6.5e-16 58.8 0.1 2.2 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|240102195|ref|YP_002958503.1| - 6.1e-05 22.5 0.0 0.0001 21.8 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase DUF4520 PF15016.6 gi|240102196|ref|YP_002958504.1| - 0.017 15.2 0.0 0.025 14.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4520) Cyanate_lyase PF02560.14 gi|240102196|ref|YP_002958504.1| - 0.018 14.9 0.2 0.8 9.6 0.1 2.4 2 1 1 3 3 3 0 Cyanate lyase C-terminal domain PfkB PF00294.24 gi|240102197|ref|YP_002958505.1| - 2e-43 148.8 0.0 2.5e-43 148.5 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Methyltransf_31 PF13847.6 gi|240102197|ref|YP_002958505.1| - 0.087 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain V-ATPase_G_2 PF16999.5 gi|240102198|ref|YP_002958506.1| - 1.4e-06 28.7 24.8 2.7e-06 27.7 24.8 1.4 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|240102198|ref|YP_002958506.1| - 4.4e-06 26.8 25.4 0.00016 21.8 13.6 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF883 PF05957.13 gi|240102198|ref|YP_002958506.1| - 0.0057 17.2 4.5 0.0057 17.2 4.5 2.0 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) Vhr1 PF04001.13 gi|240102198|ref|YP_002958506.1| - 0.012 15.9 0.6 0.018 15.3 0.5 1.4 1 1 0 1 1 1 0 Transcription factor Vhr1 V-ATPase_G PF03179.15 gi|240102198|ref|YP_002958506.1| - 0.05 14.1 27.2 0.21 12.2 27.2 1.8 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|240102198|ref|YP_002958506.1| - 0.12 12.4 20.6 0.078 13.1 8.1 2.2 1 1 1 2 2 2 0 DivIVA protein Nbl1_Borealin_N PF10444.9 gi|240102198|ref|YP_002958506.1| - 0.18 11.5 4.0 3.2 7.5 0.2 2.6 2 1 0 2 2 2 0 Nbl1 / Borealin N terminal DUF3552 PF12072.8 gi|240102198|ref|YP_002958506.1| - 0.29 10.5 26.0 0.17 11.3 19.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) CbiN PF02553.15 gi|240102198|ref|YP_002958506.1| - 0.99 9.4 2.8 1.1 9.3 0.5 2.0 1 1 2 3 3 3 0 Cobalt transport protein component CbiN RRF PF01765.19 gi|240102198|ref|YP_002958506.1| - 1.1 9.2 13.8 1.4 8.9 13.8 1.3 1 0 0 1 1 1 0 Ribosome recycling factor HrpE PF06188.12 gi|240102198|ref|YP_002958506.1| - 1.1 9.1 5.8 1.9 8.3 5.8 1.5 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E PDCD2_C PF04194.13 gi|240102198|ref|YP_002958506.1| - 1.3 9.0 5.6 1.8 8.6 5.6 1.2 1 0 0 1 1 1 0 Programmed cell death protein 2, C-terminal putative domain DUF1771 PF08590.10 gi|240102198|ref|YP_002958506.1| - 3 8.3 11.4 0.86 10.0 2.4 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF1771) RNase_J_C PF17770.1 gi|240102198|ref|YP_002958506.1| - 3.8 8.6 10.4 15 6.7 2.3 2.2 1 1 1 2 2 2 0 Ribonuclease J C-terminal domain vATP-synt_E PF01991.18 gi|240102198|ref|YP_002958506.1| - 9 5.7 29.0 1.5 8.2 8.4 2.3 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit V_ATPase_I PF01496.19 gi|240102199|ref|YP_002958507.1| - 3.8e-33 114.4 7.3 2e-21 75.7 0.0 3.1 3 1 1 4 4 4 2 V-type ATPase 116kDa subunit family Smr PF01713.21 gi|240102199|ref|YP_002958507.1| - 0.07 13.5 0.2 6 7.3 0.0 3.1 2 1 1 3 3 3 0 Smr domain V_ATPase_I_N PF18670.1 gi|240102199|ref|YP_002958507.1| - 0.071 13.5 0.1 0.33 11.4 0.1 2.2 1 0 0 1 1 1 0 V-type ATPase subunit I, N-terminal domain ATP-synt_C PF00137.21 gi|240102200|ref|YP_002958508.1| - 3.4e-29 101.0 30.2 3e-15 56.3 12.4 2.3 2 0 0 2 2 2 2 ATP synthase subunit C vATP-synt_E PF01991.18 gi|240102201|ref|YP_002958509.1| - 1.3e-35 122.6 14.3 1.5e-35 122.4 14.3 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.18 gi|240102201|ref|YP_002958509.1| - 0.0064 16.6 20.8 0.2 11.7 10.7 2.3 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) NolV PF06635.12 gi|240102201|ref|YP_002958509.1| - 0.015 14.7 3.3 0.02 14.3 3.3 1.2 1 0 0 1 1 1 0 Nodulation protein NolV DUF3552 PF12072.8 gi|240102201|ref|YP_002958509.1| - 0.023 14.1 20.6 0.32 10.4 4.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) PHA_gran_rgn PF09650.10 gi|240102201|ref|YP_002958509.1| - 0.25 11.6 7.5 0.28 11.5 5.0 2.3 3 1 0 3 3 3 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) DivIVA PF05103.13 gi|240102201|ref|YP_002958509.1| - 0.34 11.0 14.2 2 8.5 14.2 2.2 1 1 0 1 1 1 0 DivIVA protein YtxH PF12732.7 gi|240102201|ref|YP_002958509.1| - 8.2 7.0 7.4 9.2 6.9 3.7 2.4 2 1 0 2 2 2 0 YtxH-like protein vATP-synt_AC39 PF01992.16 gi|240102202|ref|YP_002958510.1| - 1.1e-61 209.2 5.3 1.2e-61 209.1 5.3 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.17 gi|240102203|ref|YP_002958511.1| - 2.2e-18 66.4 0.1 3.4e-18 65.7 0.1 1.3 1 1 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|240102204|ref|YP_002958512.1| - 1.8e-93 312.1 0.0 2.8e-93 311.5 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|240102204|ref|YP_002958512.1| - 5.6e-50 168.2 0.1 9.9e-50 167.5 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|240102204|ref|YP_002958512.1| - 1.7e-15 57.3 4.8 5.7e-15 55.6 4.8 2.0 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|240102204|ref|YP_002958512.1| - 0.03 14.6 0.0 0.084 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|240102205|ref|YP_002958513.1| - 1.1e-68 231.0 0.0 1.5e-68 230.6 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|240102205|ref|YP_002958513.1| - 3.3e-13 49.9 2.2 3.3e-13 49.9 2.2 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|240102205|ref|YP_002958513.1| - 1.1e-05 25.5 1.2 1.1e-05 25.5 1.2 2.0 2 0 0 2 2 2 1 HAS barrel domain ATP-synt_D PF01813.17 gi|240102206|ref|YP_002958514.1| - 8.6e-62 208.5 12.1 9.7e-62 208.3 12.1 1.0 1 0 0 1 1 1 1 ATP synthase subunit D ZapA PF05164.13 gi|240102206|ref|YP_002958514.1| - 2 8.9 5.9 6.2 7.3 0.3 2.7 2 1 0 2 2 2 0 Cell division protein ZapA DHHA1 PF02272.19 gi|240102207|ref|YP_002958515.1| - 6.8e-16 58.9 0.6 1.1e-15 58.3 0.6 1.3 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2c PF01411.19 gi|240102207|ref|YP_002958515.1| - 5.7e-12 44.9 0.0 8e-12 44.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|240102207|ref|YP_002958515.1| - 6.8e-11 42.1 0.8 1.5e-10 41.0 0.8 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DUF4515 PF14988.6 gi|240102207|ref|YP_002958515.1| - 0.0026 17.6 1.2 0.004 17.0 1.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4515) ZapB PF06005.12 gi|240102207|ref|YP_002958515.1| - 2.7 8.5 7.0 0.68 10.4 3.2 1.9 2 0 0 2 2 2 0 Cell division protein ZapB ATP_bind_3 PF01171.20 gi|240102208|ref|YP_002958516.1| - 1.7e-08 34.4 0.0 8.2e-08 32.2 0.0 1.9 2 0 0 2 2 2 1 PP-loop family QueC PF06508.13 gi|240102208|ref|YP_002958516.1| - 2.3e-08 33.8 0.0 3.7e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|240102208|ref|YP_002958516.1| - 9.5e-08 31.2 0.0 1.5e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|240102208|ref|YP_002958516.1| - 1.3e-05 25.3 0.0 2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|240102208|ref|YP_002958516.1| - 3.5e-05 23.1 0.0 4.7e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Diphthami_syn_2 PF01902.17 gi|240102208|ref|YP_002958516.1| - 8.3e-05 22.2 0.0 0.00014 21.4 0.0 1.3 1 0 0 1 1 1 1 Diphthamide synthase ThiI PF02568.14 gi|240102208|ref|YP_002958516.1| - 0.0028 17.3 0.0 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 gi|240102208|ref|YP_002958516.1| - 0.025 13.9 0.0 0.033 13.5 0.0 1.1 1 0 0 1 1 1 0 Arginosuccinate synthase zf-RRPl_C4 PF17026.5 gi|240102208|ref|YP_002958516.1| - 0.032 14.3 1.2 0.62 10.2 0.1 2.2 2 0 0 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type BPD_transp_1 PF00528.22 gi|240102210|ref|YP_002958518.1| - 5.8e-09 35.9 13.6 5.8e-09 35.9 13.6 1.7 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|240102211|ref|YP_002958519.1| - 6.8e-14 52.0 8.8 6.8e-14 52.0 8.8 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component HHH_5 PF14520.6 gi|240102211|ref|YP_002958519.1| - 0.054 14.1 0.0 0.19 12.4 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain LAGLIDADG_WhiA PF14527.6 gi|240102211|ref|YP_002958519.1| - 0.059 13.5 0.3 0.11 12.5 0.3 1.4 1 0 0 1 1 1 0 WhiA LAGLIDADG-like domain Radical_SAM PF04055.21 gi|240102212|ref|YP_002958520.1| - 4.5e-16 59.7 4.7 2.6e-14 54.0 3.5 2.8 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|240102212|ref|YP_002958520.1| - 0.0022 18.1 3.0 0.043 14.0 0.9 2.9 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|240102212|ref|YP_002958520.1| - 0.25 11.6 1.5 21 5.4 1.4 3.0 2 1 0 2 2 2 0 4Fe-4S single cluster domain TYW3 PF02676.14 gi|240102213|ref|YP_002958521.1| - 3.1e-46 157.4 0.0 4.1e-46 157.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 N6_N4_Mtase PF01555.18 gi|240102214|ref|YP_002958522.1| - 4.1e-15 56.1 0.2 3.8e-08 33.3 0.0 2.4 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|240102214|ref|YP_002958522.1| - 1.6e-07 31.2 0.0 4.2e-05 23.3 0.0 2.6 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|240102214|ref|YP_002958522.1| - 0.0012 18.5 0.1 1.8 8.2 0.0 2.9 3 0 0 3 3 3 2 Conserved hypothetical protein 95 MethyltransfD12 PF02086.15 gi|240102214|ref|YP_002958522.1| - 0.023 14.4 4.3 1.6 8.4 0.1 3.2 3 1 0 3 3 3 0 D12 class N6 adenine-specific DNA methyltransferase RNase_P_pop3 PF08228.11 gi|240102214|ref|YP_002958522.1| - 0.04 14.0 0.0 0.34 10.9 0.0 2.5 3 1 0 3 3 3 0 RNase P subunit Pop3 Nup54_57_C PF18570.1 gi|240102214|ref|YP_002958522.1| - 0.041 13.5 0.0 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 NUP57/Nup54 C-terminal domain HSDR_N PF04313.14 gi|240102215|ref|YP_002958523.1| - 0.0035 17.3 1.4 0.0035 17.3 1.4 2.1 2 2 1 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF1464 PF07318.12 gi|240102216|ref|YP_002958524.1| - 1.1e-100 337.0 0.3 1.2e-100 336.9 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) Cpn60_TCP1 PF00118.24 gi|240102217|ref|YP_002958525.1| - 4.3e-184 612.7 23.1 4.9e-184 612.6 23.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_5 PF07728.14 gi|240102217|ref|YP_002958525.1| - 0.047 13.7 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNB PF00773.19 gi|240102217|ref|YP_002958525.1| - 0.12 11.6 0.2 0.28 10.5 0.1 1.5 1 1 0 1 1 1 0 RNB domain Radical_SAM PF04055.21 gi|240102218|ref|YP_002958526.1| - 4e-14 53.3 0.0 9.2e-14 52.2 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|240102218|ref|YP_002958526.1| - 4.7e-08 33.4 0.0 6.5e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|240102218|ref|YP_002958526.1| - 5.5e-05 23.3 0.0 0.0001 22.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain NRDD PF13597.6 gi|240102219|ref|YP_002958527.1| - 1.2e-150 503.1 0.0 1.3e-150 502.9 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Rubredoxin_2 PF18073.1 gi|240102219|ref|YP_002958527.1| - 0.0017 18.0 3.6 0.0034 17.0 3.6 1.5 1 0 0 1 1 1 1 Rubredoxin metal binding domain HypA PF01155.19 gi|240102219|ref|YP_002958527.1| - 0.0017 18.3 0.1 0.004 17.2 0.1 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|240102219|ref|YP_002958527.1| - 0.025 14.2 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zinc_ribbon_15 PF17032.5 gi|240102219|ref|YP_002958527.1| - 0.057 14.2 0.0 0.11 13.3 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|240102219|ref|YP_002958527.1| - 1.6 8.3 4.9 6.8 6.3 5.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain TPR_12 PF13424.6 gi|240102220|ref|YP_002958528.1| - 1.6e-20 73.1 21.5 1e-10 41.7 1.5 4.5 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|240102220|ref|YP_002958528.1| - 1.1e-18 65.8 19.3 9e-05 22.3 0.5 6.7 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|240102220|ref|YP_002958528.1| - 3.2e-17 61.2 11.7 0.00061 19.6 0.1 6.2 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|240102220|ref|YP_002958528.1| - 9.3e-17 60.3 15.8 0.0031 18.2 0.0 7.0 3 3 3 7 7 7 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|240102220|ref|YP_002958528.1| - 1.8e-16 58.9 11.5 0.00083 19.4 0.0 5.9 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|240102220|ref|YP_002958528.1| - 8.6e-15 53.8 16.6 0.00018 21.2 0.4 6.2 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|240102220|ref|YP_002958528.1| - 1.9e-14 53.2 4.9 0.00014 22.3 0.1 6.6 6 1 0 6 6 6 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|240102220|ref|YP_002958528.1| - 9e-14 51.9 12.8 2.4e-08 34.5 0.3 4.0 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|240102220|ref|YP_002958528.1| - 1.4e-11 44.7 13.5 2.6e-05 24.6 0.2 4.9 2 2 2 5 5 5 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|240102220|ref|YP_002958528.1| - 4.6e-11 42.2 13.6 0.0041 16.9 0.1 5.9 6 0 0 6 6 5 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|240102220|ref|YP_002958528.1| - 4.3e-09 36.1 2.8 0.066 13.6 0.0 5.1 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|240102220|ref|YP_002958528.1| - 1.4e-08 34.5 0.1 2e-08 34.0 0.1 1.2 1 0 0 1 1 1 1 MalT-like TPR region TPR_4 PF07721.14 gi|240102220|ref|YP_002958528.1| - 1.1e-07 31.8 0.7 0.18 12.5 0.0 5.4 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_21 PF09976.9 gi|240102220|ref|YP_002958528.1| - 9.8e-06 25.4 2.8 7.2e-05 22.6 0.6 3.0 2 1 0 3 3 3 1 Tetratricopeptide repeat-like domain ANAPC3 PF12895.7 gi|240102220|ref|YP_002958528.1| - 1.6e-05 25.0 4.5 0.048 13.9 1.2 3.3 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 ANAPC5 PF12862.7 gi|240102220|ref|YP_002958528.1| - 1.9e-05 24.6 3.8 0.28 11.3 0.3 4.2 1 1 2 3 3 3 2 Anaphase-promoting complex subunit 5 TPR_15 PF13429.6 gi|240102220|ref|YP_002958528.1| - 3.7e-05 23.1 7.6 0.0033 16.7 1.2 3.8 1 1 2 3 3 3 1 Tetratricopeptide repeat SNAP PF14938.6 gi|240102220|ref|YP_002958528.1| - 7.2e-05 22.4 5.2 0.00066 19.2 1.0 3.1 1 1 1 2 2 2 1 Soluble NSF attachment protein, SNAP NARP1 PF12569.8 gi|240102220|ref|YP_002958528.1| - 9.1e-05 21.5 7.9 0.0093 14.9 2.4 3.0 1 1 2 3 3 3 2 NMDA receptor-regulated protein 1 RPN7 PF10602.9 gi|240102220|ref|YP_002958528.1| - 0.00059 19.6 11.0 0.092 12.5 0.9 4.2 1 1 4 5 5 5 2 26S proteasome subunit RPN7 DUF2225 PF09986.9 gi|240102220|ref|YP_002958528.1| - 0.00062 19.6 4.9 0.002 17.9 0.6 2.8 2 1 1 3 3 3 2 Uncharacterized protein conserved in bacteria (DUF2225) DUF3856 PF12968.7 gi|240102220|ref|YP_002958528.1| - 0.0011 19.1 3.2 0.19 11.8 0.0 3.3 3 1 1 4 4 3 1 Domain of Unknown Function (DUF3856) PPR PF01535.20 gi|240102220|ref|YP_002958528.1| - 0.0012 19.0 7.9 2.5 8.6 0.0 5.7 7 1 0 7 7 4 1 PPR repeat MIT PF04212.18 gi|240102220|ref|YP_002958528.1| - 0.0021 18.1 0.2 0.0021 18.1 0.2 4.4 3 1 1 5 5 5 1 MIT (microtubule interacting and transport) domain LppC PF04348.13 gi|240102220|ref|YP_002958528.1| - 0.0029 16.5 0.0 0.0042 16.0 0.0 1.3 1 0 0 1 1 1 1 LppC putative lipoprotein DUF2379 PF09543.10 gi|240102220|ref|YP_002958528.1| - 0.013 15.6 0.5 0.33 11.2 0.1 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2379) TPR_11 PF13414.6 gi|240102220|ref|YP_002958528.1| - 0.024 14.3 12.9 0.25 11.1 1.1 5.6 5 1 0 5 5 5 0 TPR repeat TPR_9 PF13371.6 gi|240102220|ref|YP_002958528.1| - 0.032 14.4 5.6 0.35 11.0 0.1 4.5 4 1 2 6 6 5 0 Tetratricopeptide repeat SnoaL_3 PF13474.6 gi|240102220|ref|YP_002958528.1| - 0.056 13.7 0.3 0.56 10.5 0.0 2.5 2 0 0 2 2 2 0 SnoaL-like domain HrpB1_HrpK PF09613.10 gi|240102220|ref|YP_002958528.1| - 0.085 12.5 0.1 0.41 10.3 0.1 2.2 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) Fis1_TPR_C PF14853.6 gi|240102220|ref|YP_002958528.1| - 0.085 12.9 3.7 11 6.2 0.0 3.2 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat OSCP PF00213.18 gi|240102220|ref|YP_002958528.1| - 0.086 13.0 1.3 0.25 11.5 0.2 2.3 2 1 0 2 2 2 0 ATP synthase delta (OSCP) subunit DUF2989 PF11207.8 gi|240102220|ref|YP_002958528.1| - 0.088 12.6 5.3 2.9 7.6 0.7 3.7 2 1 1 4 4 4 0 Protein of unknown function (DUF2989) DnaB_2 PF07261.11 gi|240102220|ref|YP_002958528.1| - 0.14 12.0 1.9 2 8.2 0.1 3.2 3 0 0 3 3 3 0 Replication initiation and membrane attachment Mad3_BUB1_I PF08311.12 gi|240102220|ref|YP_002958528.1| - 0.36 10.8 5.7 5.9 6.9 0.3 3.6 2 1 1 3 3 3 0 Mad3/BUB1 homology region 1 DUF4326 PF14216.6 gi|240102220|ref|YP_002958528.1| - 0.65 10.8 2.0 76 4.1 0.5 3.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4326) Gp-FAR-1 PF05823.12 gi|240102220|ref|YP_002958528.1| - 1.3 9.3 4.5 4.8 7.5 0.1 3.1 3 1 0 3 3 3 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DUF615 PF04751.14 gi|240102220|ref|YP_002958528.1| - 5.2 7.0 7.2 11 6.0 0.0 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF615) DUF2283 PF10049.9 gi|240102221|ref|YP_002958529.1| - 1e-19 70.4 2.4 1.5e-19 70.0 2.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) KTSC PF13619.6 gi|240102221|ref|YP_002958529.1| - 0.11 12.3 0.0 0.27 11.1 0.0 1.7 1 1 1 2 2 2 0 KTSC domain DUF4258 PF14076.6 gi|240102222|ref|YP_002958530.1| - 1.2e-07 32.0 0.1 1.8e-07 31.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) EF1_GNE PF00736.19 gi|240102223|ref|YP_002958531.1| - 1.1e-18 67.1 0.4 1.3e-18 67.0 0.4 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain V_ATPase_I_N PF18670.1 gi|240102223|ref|YP_002958531.1| - 0.068 13.6 0.2 0.15 12.4 0.1 1.7 1 1 1 2 2 2 0 V-type ATPase subunit I, N-terminal domain DUF1610 PF07754.11 gi|240102224|ref|YP_002958532.1| - 3.2e-14 52.6 6.0 3.2e-14 52.6 6.0 2.5 3 0 0 3 3 2 1 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|240102224|ref|YP_002958532.1| - 0.00013 21.6 3.4 0.00013 21.6 3.4 3.4 3 1 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|240102224|ref|YP_002958532.1| - 0.00066 19.6 11.1 0.0079 16.2 11.1 2.1 1 1 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|240102224|ref|YP_002958532.1| - 0.0036 17.3 0.9 0.0036 17.3 0.9 2.1 1 1 1 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|240102224|ref|YP_002958532.1| - 0.0065 15.8 17.1 0.2 11.1 0.2 3.5 4 0 0 4 4 3 3 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|240102224|ref|YP_002958532.1| - 0.013 15.4 1.8 0.013 15.4 1.8 2.7 1 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-UDP PF14569.6 gi|240102224|ref|YP_002958532.1| - 0.024 14.7 5.1 0.028 14.5 5.1 1.1 1 0 0 1 1 1 0 Zinc-binding RING-finger Nop10p PF04135.12 gi|240102224|ref|YP_002958532.1| - 0.025 14.6 5.9 1.2 9.2 1.0 2.5 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family Zn-ribbon_8 PF09723.10 gi|240102224|ref|YP_002958532.1| - 0.029 14.5 3.1 0.029 14.5 3.1 3.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|240102224|ref|YP_002958532.1| - 0.03 14.3 4.8 0.03 14.3 4.8 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-CHY PF05495.12 gi|240102224|ref|YP_002958532.1| - 0.036 14.6 7.8 0.073 13.6 7.8 1.5 1 1 0 1 1 1 0 CHY zinc finger YhfH PF14149.6 gi|240102224|ref|YP_002958532.1| - 0.04 13.9 14.3 0.87 9.6 0.5 3.3 2 1 1 3 3 3 0 YhfH-like protein HscB_4_cys PF18256.1 gi|240102224|ref|YP_002958532.1| - 0.04 13.7 0.9 0.04 13.7 0.9 3.1 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif Rubredoxin_2 PF18073.1 gi|240102224|ref|YP_002958532.1| - 0.061 13.1 17.0 4.9 7.0 0.2 3.9 3 1 0 3 3 3 0 Rubredoxin metal binding domain PolC_DP2 PF03833.13 gi|240102224|ref|YP_002958532.1| - 0.073 10.9 3.7 0.087 10.7 3.7 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 PhnA_Zn_Ribbon PF08274.12 gi|240102224|ref|YP_002958532.1| - 0.085 12.8 15.7 0.59 10.1 0.4 3.9 3 1 1 4 4 4 0 PhnA Zinc-Ribbon zinc_ribbon_10 PF10058.9 gi|240102224|ref|YP_002958532.1| - 0.098 12.4 15.9 2.4 7.9 3.0 3.8 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-MYND PF01753.18 gi|240102224|ref|YP_002958532.1| - 0.11 12.6 7.0 14 5.9 7.1 2.2 1 1 0 1 1 1 0 MYND finger DUF1272 PF06906.11 gi|240102224|ref|YP_002958532.1| - 0.11 12.6 10.8 0.48 10.6 2.7 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-ACC PF17848.1 gi|240102224|ref|YP_002958532.1| - 0.14 12.3 18.2 3.3 7.9 0.6 4.0 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf_UBZ PF18439.1 gi|240102224|ref|YP_002958532.1| - 0.15 11.7 16.2 0.95 9.1 0.7 3.7 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger C1_2 PF03107.16 gi|240102224|ref|YP_002958532.1| - 0.16 12.3 8.6 1.4 9.3 1.7 2.2 1 1 1 2 2 2 0 C1 domain zinc-ribbons_6 PF07191.12 gi|240102224|ref|YP_002958532.1| - 0.18 11.8 10.0 2.4 8.2 10.0 2.1 1 1 0 1 1 1 0 zinc-ribbons zf-NADH-PPase PF09297.11 gi|240102224|ref|YP_002958532.1| - 0.18 11.5 12.8 0.21 11.3 3.6 3.3 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|240102224|ref|YP_002958532.1| - 0.22 11.1 17.8 0.27 10.8 5.5 3.5 3 1 1 4 4 4 0 TFIIB zinc-binding Sgf11 PF08209.11 gi|240102224|ref|YP_002958532.1| - 0.32 10.6 13.4 0.36 10.4 0.4 3.7 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-Mss51 PF13824.6 gi|240102224|ref|YP_002958532.1| - 0.35 11.0 12.5 2 8.5 2.0 2.4 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-tcix PF14952.6 gi|240102224|ref|YP_002958532.1| - 0.54 9.9 14.4 1.6 8.4 1.1 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-AN1 PF01428.16 gi|240102224|ref|YP_002958532.1| - 0.61 10.3 11.4 4 7.7 2.6 2.6 1 1 1 3 3 3 0 AN1-like Zinc finger Zn_Tnp_IS1595 PF12760.7 gi|240102224|ref|YP_002958532.1| - 0.62 10.1 20.8 23 5.0 0.4 3.8 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.26 gi|240102224|ref|YP_002958532.1| - 0.69 10.5 11.3 6.6 7.4 0.5 3.6 4 0 0 4 4 3 0 Zinc finger, C2H2 type zf-dskA_traR PF01258.17 gi|240102224|ref|YP_002958532.1| - 0.71 9.9 11.7 3.1 7.8 0.1 3.6 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger IBR PF01485.21 gi|240102224|ref|YP_002958532.1| - 0.79 10.0 10.3 0.26 11.5 4.6 2.1 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain DUF2039 PF10217.9 gi|240102224|ref|YP_002958532.1| - 0.86 10.0 8.0 3.1 8.2 8.0 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) DUF35_N PF12172.8 gi|240102224|ref|YP_002958532.1| - 0.88 9.5 15.7 3.4 7.6 3.1 3.8 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prok-RING_1 PF14446.6 gi|240102224|ref|YP_002958532.1| - 1 9.4 10.6 1.1 9.2 5.5 2.6 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 NOB1_Zn_bind PF08772.11 gi|240102224|ref|YP_002958532.1| - 1 9.6 10.9 0.35 11.1 4.8 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf_C2H2_13 PF18508.1 gi|240102224|ref|YP_002958532.1| - 1 9.0 0.1 1 9.0 0.1 3.2 2 1 1 3 3 3 0 Zinc finger domain DUF2321 PF10083.9 gi|240102224|ref|YP_002958532.1| - 1.1 8.9 7.7 0.3 10.7 3.5 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) MCM_OB PF17207.3 gi|240102224|ref|YP_002958532.1| - 1.1 9.1 5.7 1.6 8.5 5.7 1.5 1 1 0 1 1 1 0 MCM OB domain FUR PF01475.19 gi|240102224|ref|YP_002958532.1| - 1.1 9.4 2.6 0.84 9.8 0.4 1.8 1 1 1 2 2 2 0 Ferric uptake regulator family Zn_ribbon_SprT PF17283.2 gi|240102224|ref|YP_002958532.1| - 1.2 9.1 18.2 11 6.0 0.8 3.9 2 1 0 2 2 2 0 SprT-like zinc ribbon domain TFIIS_C PF01096.18 gi|240102224|ref|YP_002958532.1| - 1.4 8.8 13.2 9.4 6.2 0.1 3.9 3 1 1 4 4 4 0 Transcription factor S-II (TFIIS) zf-C4_Topoisom PF01396.19 gi|240102224|ref|YP_002958532.1| - 1.6 8.5 13.5 6.2 6.7 0.6 3.6 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger DUF2072 PF09845.9 gi|240102224|ref|YP_002958532.1| - 2.3 8.5 10.7 0.22 11.8 1.4 2.2 1 1 1 2 2 2 0 Zn-ribbon containing protein NRDD PF13597.6 gi|240102224|ref|YP_002958532.1| - 2.7 6.7 11.1 0.56 8.9 1.7 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase ADK_lid PF05191.14 gi|240102224|ref|YP_002958532.1| - 2.9 8.0 11.6 34 4.5 0.0 3.4 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-HIT PF04438.16 gi|240102224|ref|YP_002958532.1| - 2.9 7.8 16.4 2.5 8.1 5.6 3.1 1 1 2 3 3 3 0 HIT zinc finger DUF2752 PF10825.8 gi|240102224|ref|YP_002958532.1| - 3.1 7.9 0.1 3.1 7.9 0.1 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF2752) Zn_Tnp_IS91 PF14319.6 gi|240102224|ref|YP_002958532.1| - 3.3 7.8 10.3 4.3 7.4 4.9 2.3 1 1 1 2 2 2 0 Transposase zinc-binding domain zf_C2H2_10 PF18414.1 gi|240102224|ref|YP_002958532.1| - 3.8 7.1 11.4 3.8 7.1 0.1 2.7 3 0 0 3 3 2 0 C2H2 type zinc-finger Nudix_N_2 PF14803.6 gi|240102224|ref|YP_002958532.1| - 5.5 7.0 17.0 5.1 7.1 5.2 3.7 2 1 2 4 4 4 0 Nudix N-terminal LIM PF00412.22 gi|240102224|ref|YP_002958532.1| - 6 7.2 11.2 5.1 7.4 3.6 3.0 1 1 2 3 3 2 0 LIM domain zf-TFIIB PF13453.6 gi|240102224|ref|YP_002958532.1| - 6.2 6.2 15.9 13 5.2 0.4 3.8 2 1 1 3 3 3 0 Transcription factor zinc-finger Anti-TRAP PF15777.5 gi|240102224|ref|YP_002958532.1| - 6.3 6.9 12.7 1 9.4 4.3 2.3 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Ribosomal_L37ae PF01780.19 gi|240102224|ref|YP_002958532.1| - 7.5 6.7 12.4 3.3 7.8 0.9 3.1 1 1 2 3 3 3 0 Ribosomal L37ae protein family A2L_zn_ribbon PF08792.10 gi|240102224|ref|YP_002958532.1| - 8.4 6.2 13.6 30 4.5 0.1 3.6 3 1 0 3 3 3 0 A2L zinc ribbon domain Ribosomal_L32p PF01783.23 gi|240102224|ref|YP_002958532.1| - 8.6 6.7 11.1 2 8.8 2.1 3.1 1 1 1 2 2 2 0 Ribosomal L32p protein family HTH_24 PF13412.6 gi|240102225|ref|YP_002958533.1| - 4.1e-17 61.5 1.2 4.6e-15 54.9 0.5 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|240102225|ref|YP_002958533.1| - 1.3e-14 53.9 0.0 2.5e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|240102225|ref|YP_002958533.1| - 1.7e-12 47.0 0.2 8.7e-12 44.7 0.1 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|240102225|ref|YP_002958533.1| - 9.6e-06 25.4 0.1 1.9e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|240102225|ref|YP_002958533.1| - 6.3e-05 22.7 0.0 0.00013 21.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|240102225|ref|YP_002958533.1| - 0.00018 21.4 0.0 0.00043 20.1 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|240102225|ref|YP_002958533.1| - 0.00033 21.1 0.0 0.00067 20.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|240102225|ref|YP_002958533.1| - 0.0012 18.7 0.1 0.0024 17.8 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|240102225|ref|YP_002958533.1| - 0.0014 18.7 0.0 0.0024 17.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|240102225|ref|YP_002958533.1| - 0.0016 18.3 0.0 0.0039 17.1 0.0 1.6 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|240102225|ref|YP_002958533.1| - 0.0022 18.1 0.1 0.0094 16.1 0.1 2.0 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_8 PF02954.19 gi|240102225|ref|YP_002958533.1| - 0.0029 17.4 0.1 0.006 16.3 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_23 PF13384.6 gi|240102225|ref|YP_002958533.1| - 0.012 15.4 0.1 0.18 11.6 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_30 PF13556.6 gi|240102225|ref|YP_002958533.1| - 0.027 14.3 0.1 0.05 13.4 0.1 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_5 PF01022.20 gi|240102225|ref|YP_002958533.1| - 0.034 14.0 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.12 gi|240102225|ref|YP_002958533.1| - 0.095 12.5 0.0 0.25 11.2 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain Mga PF05043.13 gi|240102225|ref|YP_002958533.1| - 0.11 13.0 0.0 0.19 12.4 0.0 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain Spore_YhcN_YlaJ PF09580.10 gi|240102225|ref|YP_002958533.1| - 0.14 12.3 0.1 0.24 11.5 0.1 1.4 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Ham1p_like PF01725.16 gi|240102226|ref|YP_002958534.1| - 4.7e-53 179.9 0.0 5.3e-53 179.7 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Adenosine_kin PF04008.14 gi|240102227|ref|YP_002958535.1| - 3.1e-62 208.9 0.4 3.5e-62 208.8 0.4 1.0 1 0 0 1 1 1 1 Adenosine specific kinase HTH_IclR PF09339.10 gi|240102228|ref|YP_002958536.1| - 9.1e-07 28.6 0.0 3.5e-06 26.7 0.0 2.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|240102228|ref|YP_002958536.1| - 1.3e-06 27.9 0.9 2.2e-06 27.1 0.0 1.9 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|240102228|ref|YP_002958536.1| - 4.1e-05 23.3 0.0 0.00017 21.4 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|240102228|ref|YP_002958536.1| - 0.00062 19.5 0.0 0.028 14.2 0.0 2.5 2 0 0 2 2 2 1 Homeodomain-like domain MarR PF01047.22 gi|240102228|ref|YP_002958536.1| - 0.0013 18.6 0.0 0.03 14.3 0.0 2.3 2 0 0 2 2 2 1 MarR family TetR_N PF00440.23 gi|240102228|ref|YP_002958536.1| - 0.0084 15.9 0.2 2.3 8.1 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family MarR_2 PF12802.7 gi|240102228|ref|YP_002958536.1| - 0.011 15.6 0.0 0.11 12.4 0.0 2.3 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|240102228|ref|YP_002958536.1| - 0.037 14.1 0.0 0.067 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|240102228|ref|YP_002958536.1| - 0.047 13.2 0.1 0.18 11.3 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|240102228|ref|YP_002958536.1| - 0.05 13.7 0.0 0.31 11.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|240102228|ref|YP_002958536.1| - 0.055 13.2 0.3 0.34 10.7 0.0 2.4 4 0 0 4 4 4 0 Helix-turn-helix domain GntR PF00392.21 gi|240102228|ref|YP_002958536.1| - 0.14 11.8 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Tnp_ISL3 PF13542.6 gi|240102228|ref|YP_002958536.1| - 0.15 11.5 0.0 8.7 5.8 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DUF2089 PF09862.9 gi|240102228|ref|YP_002958536.1| - 0.15 12.1 0.1 1.6 8.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) HTH_5 PF01022.20 gi|240102228|ref|YP_002958536.1| - 0.15 11.9 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family SPASM PF13186.6 gi|240102229|ref|YP_002958537.1| - 6.6e-06 26.6 0.0 1.5e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain MoaE PF02391.17 gi|240102230|ref|YP_002958538.1| - 1.4e-39 134.8 0.1 2.2e-39 134.2 0.1 1.3 1 0 0 1 1 1 1 MoaE protein DUF1581 PF07619.11 gi|240102230|ref|YP_002958538.1| - 0.074 13.2 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1581) ThiF PF00899.21 gi|240102232|ref|YP_002958540.1| - 1e-54 185.5 0.0 1.3e-54 185.2 0.0 1.1 1 0 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.19 gi|240102232|ref|YP_002958540.1| - 0.00014 21.3 0.2 0.0022 17.4 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|240102232|ref|YP_002958540.1| - 0.00079 19.7 0.0 0.0017 18.6 0.0 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 gi|240102232|ref|YP_002958540.1| - 0.0043 16.6 0.1 0.026 14.1 0.0 2.0 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|240102232|ref|YP_002958540.1| - 0.013 15.1 0.1 0.021 14.5 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|240102232|ref|YP_002958540.1| - 0.02 14.9 0.1 0.36 10.9 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Ldh_1_N PF00056.23 gi|240102232|ref|YP_002958540.1| - 0.028 14.5 2.1 0.13 12.3 0.1 2.5 2 1 0 3 3 3 0 lactate/malate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|240102232|ref|YP_002958540.1| - 0.039 14.5 0.0 0.26 11.9 0.0 2.4 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|240102232|ref|YP_002958540.1| - 0.059 13.3 0.0 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|240102232|ref|YP_002958540.1| - 0.066 13.7 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|240102232|ref|YP_002958540.1| - 0.1 12.9 0.0 0.32 11.3 0.0 1.9 1 0 0 1 1 1 0 TrkA-N domain Cas9_C PF18525.1 gi|240102232|ref|YP_002958540.1| - 0.16 12.1 0.0 0.26 11.5 0.0 1.3 1 0 0 1 1 1 0 Cas9 C-terminal domain DAO PF01266.24 gi|240102232|ref|YP_002958540.1| - 0.19 11.3 2.4 0.44 10.1 2.0 1.6 1 1 0 1 1 1 0 FAD dependent oxidoreductase DeoC PF01791.9 gi|240102234|ref|YP_002958542.1| - 3.9e-23 82.3 3.8 4.8e-23 82.0 3.8 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase NanE PF04131.14 gi|240102234|ref|YP_002958542.1| - 0.00011 21.4 0.8 0.00018 20.8 0.8 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|240102234|ref|YP_002958542.1| - 0.0013 18.0 1.2 0.0025 17.1 1.1 1.6 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|240102234|ref|YP_002958542.1| - 0.0041 16.2 1.6 0.0045 16.0 1.6 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain AP_endonuc_2 PF01261.24 gi|240102234|ref|YP_002958542.1| - 0.0084 15.6 0.1 3.3 7.1 0.0 2.5 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel HMGL-like PF00682.19 gi|240102234|ref|YP_002958542.1| - 0.012 15.1 0.8 0.048 13.2 0.8 2.0 1 1 0 1 1 1 0 HMGL-like His_biosynth PF00977.21 gi|240102234|ref|YP_002958542.1| - 0.02 14.4 0.9 0.12 11.8 0.1 2.2 1 1 0 2 2 2 0 Histidine biosynthesis protein cwf21 PF08312.12 gi|240102234|ref|YP_002958542.1| - 0.083 13.1 0.1 0.97 9.6 0.0 2.6 3 1 0 3 3 3 0 cwf21 domain DUF2802 PF10975.8 gi|240102234|ref|YP_002958542.1| - 0.12 12.5 0.3 22 5.3 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) Glyco_hydro_97 PF10566.9 gi|240102234|ref|YP_002958542.1| - 0.17 11.1 0.2 0.36 10.1 0.1 1.6 2 0 0 2 2 2 0 Glycoside hydrolase 97 DUF1884 PF08967.10 gi|240102235|ref|YP_002958543.1| - 7.1e-22 77.5 0.5 2.7e-21 75.6 0.5 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF1884) Glyco_trans_4_3 PF12000.8 gi|240102235|ref|YP_002958543.1| - 0.0028 17.4 0.0 0.0032 17.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 4 group ADSL_C PF10397.9 gi|240102235|ref|YP_002958543.1| - 0.075 13.6 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus Exog_C PF18026.1 gi|240102235|ref|YP_002958543.1| - 0.8 9.8 2.7 1.4 9.0 0.1 2.4 3 0 0 3 3 3 0 Endo/exonuclease (EXOG) C-terminal domain DUF2613 PF11021.8 gi|240102236|ref|YP_002958544.1| - 0.062 13.4 0.0 0.062 13.4 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2613) 5TM-5TMR_LYT PF07694.12 gi|240102236|ref|YP_002958544.1| - 6.4 6.3 16.6 20 4.6 16.4 1.9 1 1 0 1 1 1 0 5TMR of 5TMR-LYT Aminotran_3 PF00202.21 gi|240102237|ref|YP_002958545.1| - 8.3e-119 396.9 0.0 9.9e-119 396.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Pyr_redox_2 PF07992.14 gi|240102238|ref|YP_002958546.1| - 1.9e-60 204.6 1.2 2.1e-60 204.4 1.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|240102238|ref|YP_002958546.1| - 5e-30 104.8 1.4 1.8e-23 83.3 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|240102238|ref|YP_002958546.1| - 2.9e-20 72.6 8.2 1.6e-17 63.8 0.8 3.9 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|240102238|ref|YP_002958546.1| - 5.7e-15 55.3 0.1 2.9e-05 23.3 0.0 4.1 4 0 0 4 4 4 4 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|240102238|ref|YP_002958546.1| - 6.7e-12 45.2 1.4 1e-05 24.8 0.1 4.2 3 1 1 4 4 4 2 FAD binding domain DAO PF01266.24 gi|240102238|ref|YP_002958546.1| - 4.3e-09 36.4 5.6 0.015 14.9 0.2 3.8 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|240102238|ref|YP_002958546.1| - 7.3e-09 35.3 0.9 0.00096 18.5 0.0 2.5 2 1 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|240102238|ref|YP_002958546.1| - 8.1e-09 34.7 0.5 0.00079 18.2 0.1 3.7 4 0 0 4 4 4 3 HI0933-like protein FAD_oxidored PF12831.7 gi|240102238|ref|YP_002958546.1| - 9.7e-09 35.1 2.9 4.2e-07 29.7 0.1 3.0 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|240102238|ref|YP_002958546.1| - 6.9e-07 29.7 1.1 0.00067 20.1 0.2 3.2 3 0 0 3 3 3 1 Putative NAD(P)-binding K_oxygenase PF13434.6 gi|240102238|ref|YP_002958546.1| - 1.2e-05 24.7 0.1 0.0011 18.2 0.0 3.0 2 1 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|240102238|ref|YP_002958546.1| - 1.3e-05 25.3 1.3 0.0014 18.8 0.3 2.6 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|240102238|ref|YP_002958546.1| - 1.3e-05 24.5 0.1 0.00098 18.4 0.0 2.3 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|240102238|ref|YP_002958546.1| - 0.00015 21.1 2.3 0.084 12.2 0.0 2.5 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain PALP PF00291.25 gi|240102238|ref|YP_002958546.1| - 0.001 18.5 0.0 0.05 13.0 0.0 2.5 3 0 0 3 3 3 1 Pyridoxal-phosphate dependent enzyme Shikimate_DH PF01488.20 gi|240102238|ref|YP_002958546.1| - 0.0037 17.3 0.4 0.17 11.9 0.0 3.0 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|240102238|ref|YP_002958546.1| - 0.0049 16.5 0.1 0.01 15.4 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|240102238|ref|YP_002958546.1| - 0.0058 16.0 0.8 1.3 8.3 0.0 3.0 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|240102238|ref|YP_002958546.1| - 0.0095 15.0 0.4 0.55 9.2 0.1 2.8 3 0 0 3 3 3 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|240102238|ref|YP_002958546.1| - 0.011 14.6 3.3 0.41 9.4 0.2 2.5 2 1 1 3 3 3 0 Tryptophan halogenase Amino_oxidase PF01593.24 gi|240102238|ref|YP_002958546.1| - 0.014 14.7 0.0 0.066 12.5 0.0 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase XdhC_C PF13478.6 gi|240102238|ref|YP_002958546.1| - 0.018 15.5 0.0 0.43 11.1 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain YdjM PF04307.14 gi|240102239|ref|YP_002958547.1| - 2e-12 46.8 4.9 2.6e-12 46.4 4.9 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Phage_holin_5_2 PF16079.5 gi|240102239|ref|YP_002958547.1| - 0.013 15.8 4.0 0.36 11.2 0.9 2.6 1 1 1 2 2 2 0 Phage holin family Hol44, in holin superfamily V DUF3180 PF11377.8 gi|240102239|ref|YP_002958547.1| - 1.2 9.3 12.5 0.16 12.1 7.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3180) Phage_holin_5_1 PF06946.11 gi|240102239|ref|YP_002958547.1| - 2.3 8.7 5.7 4.1 7.8 0.3 2.6 2 1 1 3 3 3 0 Bacteriophage A118-like holin, Hol118 NACHT PF05729.12 gi|240102240|ref|YP_002958548.1| - 4.2e-06 26.8 0.3 0.012 15.5 0.0 3.0 3 0 0 3 3 3 2 NACHT domain TrmB PF01978.19 gi|240102240|ref|YP_002958548.1| - 7.2e-06 25.8 0.0 0.0016 18.3 0.0 2.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB AAA_22 PF13401.6 gi|240102240|ref|YP_002958548.1| - 8.7e-06 26.1 0.0 4.5e-05 23.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|240102240|ref|YP_002958548.1| - 8.3e-05 23.0 0.1 0.00051 20.5 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|240102240|ref|YP_002958548.1| - 0.00017 21.6 0.4 0.00061 19.8 0.3 2.1 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|240102240|ref|YP_002958548.1| - 0.00068 19.1 0.5 0.0018 17.7 0.5 1.7 1 1 0 1 1 1 1 Bacterial TniB protein AAA_16 PF13191.6 gi|240102240|ref|YP_002958548.1| - 0.001 19.5 0.0 0.0024 18.3 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|240102240|ref|YP_002958548.1| - 0.0083 15.3 0.0 0.078 12.1 0.0 2.5 2 1 1 3 3 3 1 NB-ARC domain AAA_14 PF13173.6 gi|240102240|ref|YP_002958548.1| - 0.0088 16.1 1.0 0.47 10.5 0.1 2.9 1 1 1 2 2 2 1 AAA domain ATPase PF06745.13 gi|240102240|ref|YP_002958548.1| - 0.022 14.1 0.2 0.15 11.4 0.2 2.2 1 1 0 1 1 1 0 KaiC AAA_35 PF14516.6 gi|240102240|ref|YP_002958548.1| - 0.022 13.6 0.2 0.035 12.9 0.2 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.6 gi|240102240|ref|YP_002958548.1| - 0.047 13.4 0.0 0.079 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|240102240|ref|YP_002958548.1| - 0.067 13.7 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter CEP44 PF15007.6 gi|240102240|ref|YP_002958548.1| - 0.075 13.2 0.3 0.76 9.9 0.0 2.7 3 1 2 5 5 4 0 Centrosomal spindle body, CEP44 TrwB_AAD_bind PF10412.9 gi|240102240|ref|YP_002958548.1| - 0.088 11.7 0.1 0.17 10.8 0.1 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.14 gi|240102240|ref|YP_002958548.1| - 0.088 12.7 0.2 8.2 6.3 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_assoc_2 PF16193.5 gi|240102240|ref|YP_002958548.1| - 0.089 13.1 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA C-terminal domain Bac_DnaA PF00308.18 gi|240102240|ref|YP_002958548.1| - 0.09 12.6 0.1 0.93 9.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein SRP54 PF00448.22 gi|240102240|ref|YP_002958548.1| - 0.12 12.0 0.1 0.26 10.9 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_5 PF07728.14 gi|240102240|ref|YP_002958548.1| - 0.12 12.3 0.0 5.9 6.9 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|240102240|ref|YP_002958548.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region THUMP PF02926.17 gi|240102241|ref|YP_002958549.1| - 9.6e-21 74.4 0.0 1.2e-20 74.0 0.0 1.1 1 0 0 1 1 1 1 THUMP domain ASCH PF04266.14 gi|240102242|ref|YP_002958550.1| - 1e-17 64.6 1.7 1.2e-17 64.4 1.7 1.0 1 0 0 1 1 1 1 ASCH domain Peptidase_M32 PF02074.15 gi|240102244|ref|YP_002958552.1| - 3.6e-164 547.1 0.0 4.1e-164 546.9 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase PfkB PF00294.24 gi|240102245|ref|YP_002958553.1| - 1.6e-41 142.6 0.0 2.1e-41 142.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|240102245|ref|YP_002958553.1| - 8.5e-08 31.9 0.0 1.4e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DUF58 PF01882.18 gi|240102247|ref|YP_002958555.1| - 4.4e-22 78.2 0.0 1.1e-21 76.8 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 bMG10 PF17973.1 gi|240102247|ref|YP_002958555.1| - 0.09 13.0 0.0 2.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial Alpha-2-macroglobulin MG10 domain AAA_3 PF07726.11 gi|240102248|ref|YP_002958556.1| - 1.5e-68 228.7 0.1 2.5e-68 227.9 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|240102248|ref|YP_002958556.1| - 1.8e-21 75.7 0.0 4.1e-21 74.6 0.0 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|240102248|ref|YP_002958556.1| - 2.3e-14 53.6 0.0 7e-13 48.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|240102248|ref|YP_002958556.1| - 1.8e-05 25.2 0.0 3.2e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|240102248|ref|YP_002958556.1| - 8.4e-05 22.4 0.1 0.0017 18.1 0.0 2.7 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|240102248|ref|YP_002958556.1| - 0.0003 20.5 0.0 0.00093 18.9 0.0 1.7 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM PF00493.23 gi|240102248|ref|YP_002958556.1| - 0.0059 15.7 0.0 0.014 14.5 0.0 1.6 1 1 0 1 1 1 1 MCM P-loop domain AAA_lid_8 PF17868.1 gi|240102248|ref|YP_002958556.1| - 0.013 15.4 1.2 0.036 14.0 0.0 2.4 3 1 0 3 3 3 0 AAA lid domain Mg_chelatase PF01078.21 gi|240102248|ref|YP_002958556.1| - 0.016 14.6 0.2 3.6 6.9 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MCM_lid PF17855.1 gi|240102248|ref|YP_002958556.1| - 0.035 14.5 0.6 0.07 13.6 0.1 1.8 2 0 0 2 2 2 0 MCM AAA-lid domain ABC_membrane_3 PF13748.6 gi|240102249|ref|YP_002958557.1| - 0.012 14.9 0.1 0.017 14.4 0.1 1.1 1 0 0 1 1 1 0 ABC transporter transmembrane region DUF3640 PF12342.8 gi|240102249|ref|YP_002958557.1| - 0.075 12.8 0.6 0.13 12.0 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3640) DUF4129 PF13559.6 gi|240102250|ref|YP_002958558.1| - 7.7e-10 38.9 0.4 1.7e-09 37.8 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Saf_2TM PF18303.1 gi|240102250|ref|YP_002958558.1| - 3.3e-05 23.5 5.9 0.0018 17.9 1.0 2.3 1 1 0 2 2 2 2 SAVED-fused 2TM effector domain DUF3810 PF12725.7 gi|240102250|ref|YP_002958558.1| - 0.0015 17.9 1.1 0.034 13.5 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3810) TctB PF07331.11 gi|240102250|ref|YP_002958558.1| - 0.003 17.9 5.6 0.031 14.5 6.0 2.0 1 1 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family DUF996 PF06195.13 gi|240102250|ref|YP_002958558.1| - 0.0087 16.3 1.0 0.0087 16.3 1.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF996) DUF2207 PF09972.9 gi|240102250|ref|YP_002958558.1| - 0.011 14.6 4.9 0.17 10.6 0.1 2.2 1 1 2 3 3 3 0 Predicted membrane protein (DUF2207) Abhydrolase_9_N PF15420.6 gi|240102250|ref|YP_002958558.1| - 0.034 14.2 3.0 0.14 12.2 0.8 2.1 2 0 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus MIG-14_Wnt-bd PF06664.12 gi|240102250|ref|YP_002958558.1| - 0.037 13.3 2.5 0.17 11.1 2.5 1.9 1 1 0 1 1 1 0 Wnt-binding factor required for Wnt secretion Conotoxin PF02950.17 gi|240102250|ref|YP_002958558.1| - 0.14 13.2 0.0 32 5.7 0.0 2.7 2 0 0 2 2 2 0 Conotoxin DUF4131 PF13567.6 gi|240102250|ref|YP_002958558.1| - 2 8.0 8.4 1.2 8.8 1.3 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) DUF2118 PF09891.9 gi|240102251|ref|YP_002958559.1| - 1.4e-52 177.6 0.3 1.6e-52 177.5 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) CofC PF01983.16 gi|240102251|ref|YP_002958559.1| - 0.081 12.1 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like RnfC_N PF13375.6 gi|240102251|ref|YP_002958559.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain FKBP_C PF00254.28 gi|240102252|ref|YP_002958560.1| - 2.4e-21 75.9 0.0 3.7e-21 75.3 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase ORF6N PF10543.9 gi|240102252|ref|YP_002958560.1| - 0.11 12.8 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 ORF6N domain T2SSF PF00482.23 gi|240102253|ref|YP_002958561.1| - 2.3e-16 59.9 0.6 2.3e-16 59.9 0.6 3.0 3 1 1 4 4 4 1 Type II secretion system (T2SS), protein F Halogen_Hydrol PF10112.9 gi|240102253|ref|YP_002958561.1| - 0.15 12.1 0.5 0.42 10.6 0.5 1.7 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Bunya_G2 PF03563.13 gi|240102253|ref|YP_002958561.1| - 0.19 10.9 5.0 0.3 10.3 5.0 1.2 1 0 0 1 1 1 0 Bunyavirus glycoprotein G2 HemY_N PF07219.13 gi|240102253|ref|YP_002958561.1| - 2.2 8.5 6.0 0.21 11.8 0.9 1.9 2 0 0 2 2 2 0 HemY protein N-terminus DUF2207 PF09972.9 gi|240102253|ref|YP_002958561.1| - 3.4 6.3 11.2 0.047 12.5 2.7 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) T2SSF PF00482.23 gi|240102254|ref|YP_002958562.1| - 2.8e-23 82.2 2.9 2.8e-23 82.2 2.9 3.1 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|240102254|ref|YP_002958562.1| - 3.3e-05 22.9 3.0 0.0029 16.4 0.0 2.1 2 0 0 2 2 2 2 Predicted membrane protein (DUF2207) Halogen_Hydrol PF10112.9 gi|240102254|ref|YP_002958562.1| - 0.041 13.9 0.2 0.041 13.9 0.2 2.9 3 0 0 3 3 3 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein PEX11 PF05648.14 gi|240102254|ref|YP_002958562.1| - 0.13 11.7 0.1 0.97 8.9 0.0 2.0 2 0 0 2 2 2 0 Peroxisomal biogenesis factor 11 (PEX11) DUF3087 PF11286.8 gi|240102254|ref|YP_002958562.1| - 0.29 10.6 2.2 0.34 10.4 0.2 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3087) T2SSE PF00437.20 gi|240102255|ref|YP_002958563.1| - 8.9e-59 198.8 0.0 1.5e-55 188.2 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein Intein_splicing PF14890.6 gi|240102255|ref|YP_002958563.1| - 1.3e-24 86.6 0.4 4.7e-24 84.9 0.0 2.1 2 0 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|240102255|ref|YP_002958563.1| - 1.3e-16 60.6 0.1 1.3e-14 54.3 0.0 3.4 3 0 0 3 3 3 1 LAGLIDADG-like domain FtsK_SpoIIIE PF01580.18 gi|240102255|ref|YP_002958563.1| - 0.00013 21.4 0.5 0.00039 19.8 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family Hom_end PF05204.14 gi|240102255|ref|YP_002958563.1| - 0.00035 20.7 0.0 0.0017 18.5 0.0 2.2 2 0 0 2 2 2 1 Homing endonuclease HTH_31 PF13560.6 gi|240102255|ref|YP_002958563.1| - 0.0013 19.0 1.7 0.013 15.8 1.3 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain Zeta_toxin PF06414.12 gi|240102255|ref|YP_002958563.1| - 0.0014 17.9 0.0 0.0045 16.3 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.6 gi|240102255|ref|YP_002958563.1| - 0.006 16.3 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DEAD PF00270.29 gi|240102255|ref|YP_002958563.1| - 0.0097 15.7 0.1 4.1 7.1 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_18 PF13238.6 gi|240102255|ref|YP_002958563.1| - 0.022 15.3 0.1 0.23 12.0 0.0 2.8 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|240102255|ref|YP_002958563.1| - 0.028 14.9 0.0 0.078 13.5 0.0 1.7 1 0 0 1 1 1 0 ABC transporter HTH_19 PF12844.7 gi|240102255|ref|YP_002958563.1| - 0.035 14.1 0.2 0.035 14.1 0.2 3.2 5 0 0 5 5 2 0 Helix-turn-helix domain AAA_16 PF13191.6 gi|240102255|ref|YP_002958563.1| - 0.075 13.4 0.0 0.4 11.0 0.0 2.3 3 0 0 3 3 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|240102255|ref|YP_002958563.1| - 0.083 13.1 0.1 0.21 11.8 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|240102255|ref|YP_002958563.1| - 0.12 12.7 0.2 0.29 11.5 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|240102255|ref|YP_002958563.1| - 0.12 12.6 0.1 0.99 9.7 0.0 2.6 3 0 0 3 3 3 0 AAA domain SRP54 PF00448.22 gi|240102255|ref|YP_002958563.1| - 0.19 11.3 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF515 PF04415.12 gi|240102257|ref|YP_002958565.1| - 2.5e-110 368.9 16.7 3.3e-110 368.6 16.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF515) Chordopox_A13L PF05961.11 gi|240102257|ref|YP_002958565.1| - 0.09 13.0 2.2 0.59 10.4 0.0 2.9 1 1 2 3 3 3 0 Chordopoxvirus A13L protein Shisa PF13908.6 gi|240102257|ref|YP_002958565.1| - 0.12 12.6 2.5 7 6.8 0.0 2.6 2 0 0 2 2 2 0 Wnt and FGF inhibitory regulator HbrB PF08539.11 gi|240102257|ref|YP_002958565.1| - 0.82 9.7 4.5 12 5.8 0.1 2.8 2 1 1 3 3 3 0 HbrB-like COX14 PF14880.6 gi|240102257|ref|YP_002958565.1| - 1.6 8.7 4.0 6.7 6.6 0.0 2.6 2 0 0 2 2 2 0 Cytochrome oxidase c assembly SSP160 PF06933.11 gi|240102257|ref|YP_002958565.1| - 4.9 5.2 19.7 7.2 4.7 19.7 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 MMR_HSR1 PF01926.23 gi|240102259|ref|YP_002958567.1| - 9.7e-15 54.7 0.0 1.7e-12 47.4 0.0 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|240102259|ref|YP_002958567.1| - 5.7e-10 39.3 0.0 2.3e-09 37.4 0.0 1.8 1 1 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|240102259|ref|YP_002958567.1| - 7.2e-10 38.6 0.0 6.1e-06 25.8 0.0 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B Arf PF00025.21 gi|240102259|ref|YP_002958567.1| - 1.2e-05 24.8 0.3 0.0037 16.7 0.1 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|240102259|ref|YP_002958567.1| - 0.00034 20.2 0.1 0.017 14.6 0.0 3.1 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|240102259|ref|YP_002958567.1| - 0.0017 18.4 0.1 0.41 10.7 0.0 3.1 2 1 1 3 3 3 1 Dynamin family MMR_HSR1_Xtn PF16897.5 gi|240102259|ref|YP_002958567.1| - 0.023 14.7 0.0 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Roc PF08477.13 gi|240102259|ref|YP_002958567.1| - 0.069 13.4 0.4 0.94 9.7 0.1 2.6 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase AAA_24 PF13479.6 gi|240102259|ref|YP_002958567.1| - 0.13 11.9 0.2 0.26 11.0 0.2 1.4 1 0 0 1 1 1 0 AAA domain UPF0020 PF01170.18 gi|240102260|ref|YP_002958568.1| - 2.6e-38 131.7 0.0 6.7e-37 127.1 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|240102260|ref|YP_002958568.1| - 6.5e-30 104.1 3.3 1.1e-29 103.3 3.3 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 gi|240102260|ref|YP_002958568.1| - 7.9e-09 35.5 0.0 1.5e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|240102260|ref|YP_002958568.1| - 2.2e-06 28.3 0.0 2.4e-05 24.9 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|240102260|ref|YP_002958568.1| - 6.4e-05 22.6 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 gi|240102260|ref|YP_002958568.1| - 0.00017 22.2 0.0 0.0012 19.4 0.0 2.4 3 1 0 3 3 3 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|240102260|ref|YP_002958568.1| - 0.0014 18.4 0.0 0.0025 17.6 0.0 1.4 1 0 0 1 1 1 1 DNA methylase Cons_hypoth95 PF03602.15 gi|240102260|ref|YP_002958568.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.7 2 1 0 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_30 PF05430.11 gi|240102260|ref|YP_002958568.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase PBP_like_2 PF12849.7 gi|240102262|ref|YP_002958570.1| - 6.3e-59 200.0 0.8 7.8e-59 199.6 0.8 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|240102262|ref|YP_002958570.1| - 5.5e-24 85.7 5.9 7e-24 85.3 5.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|240102262|ref|YP_002958570.1| - 2.4e-07 30.1 0.0 8e-07 28.4 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain AP_endonuc_2 PF01261.24 gi|240102263|ref|YP_002958571.1| - 1.2e-20 73.8 0.3 1.7e-20 73.4 0.3 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF4466 PF14725.6 gi|240102263|ref|YP_002958571.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4466) BPD_transp_1 PF00528.22 gi|240102264|ref|YP_002958572.1| - 1.3e-13 51.1 17.3 1.3e-13 51.1 17.3 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|240102265|ref|YP_002958573.1| - 9.7e-15 54.8 15.6 9.7e-15 54.8 15.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component VMA21 PF09446.10 gi|240102265|ref|YP_002958573.1| - 0.077 13.1 4.3 0.29 11.3 4.3 2.0 1 1 0 1 1 1 0 VMA21-like domain ABC_tran PF00005.27 gi|240102266|ref|YP_002958574.1| - 1.7e-32 112.8 0.0 2.2e-32 112.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240102266|ref|YP_002958574.1| - 1.3e-07 31.8 0.0 0.00016 21.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240102266|ref|YP_002958574.1| - 3e-05 23.6 0.0 0.0017 17.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|240102266|ref|YP_002958574.1| - 0.00024 20.8 0.0 0.00049 19.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|240102266|ref|YP_002958574.1| - 0.00034 20.9 0.0 0.00061 20.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240102266|ref|YP_002958574.1| - 0.0016 18.9 0.0 0.0025 18.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|240102266|ref|YP_002958574.1| - 0.005 16.8 0.0 0.013 15.4 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|240102266|ref|YP_002958574.1| - 0.0057 17.2 0.0 0.01 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|240102266|ref|YP_002958574.1| - 0.0061 16.5 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain PRK PF00485.18 gi|240102266|ref|YP_002958574.1| - 0.0075 16.0 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_15 PF13175.6 gi|240102266|ref|YP_002958574.1| - 0.014 15.1 0.0 0.93 9.1 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|240102266|ref|YP_002958574.1| - 0.015 14.8 0.0 0.053 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|240102266|ref|YP_002958574.1| - 0.027 14.9 0.0 2.8 8.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|240102266|ref|YP_002958574.1| - 0.028 14.4 0.0 0.078 13.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|240102266|ref|YP_002958574.1| - 0.039 13.7 0.0 0.073 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|240102266|ref|YP_002958574.1| - 0.043 13.5 0.0 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|240102266|ref|YP_002958574.1| - 0.079 13.4 0.0 0.23 11.8 0.0 1.8 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.22 gi|240102266|ref|YP_002958574.1| - 0.13 11.4 0.0 0.25 10.5 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain ABC_ATPase PF09818.9 gi|240102266|ref|YP_002958574.1| - 0.17 10.7 0.0 4 6.1 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class TniB PF05621.11 gi|240102266|ref|YP_002958574.1| - 0.18 11.2 0.0 2.5 7.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein PhoU PF01895.19 gi|240102267|ref|YP_002958575.1| - 6e-18 65.1 10.9 7.4e-10 39.2 1.0 2.3 2 0 0 2 2 2 2 PhoU domain Phage_holin_3_6 PF07332.11 gi|240102268|ref|YP_002958576.1| - 2.1 8.4 8.7 3.7 7.6 8.7 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III tRNA-synt_1b PF00579.25 gi|240102270|ref|YP_002958578.1| - 8.2e-26 91.0 0.0 1.2e-25 90.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Aromatic_hydrox PF11723.8 gi|240102270|ref|YP_002958578.1| - 0.18 11.3 0.4 0.42 10.1 0.0 1.8 3 0 0 3 3 3 0 Homotrimeric ring hydroxylase DUF234 PF03008.14 gi|240102271|ref|YP_002958579.1| - 1.4e-29 102.4 0.3 4.3e-29 100.9 0.3 1.8 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|240102271|ref|YP_002958579.1| - 3.4e-22 79.5 2.5 2e-20 73.8 2.5 2.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|240102271|ref|YP_002958579.1| - 3.9e-09 36.6 0.1 8.5e-09 35.5 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240102271|ref|YP_002958579.1| - 1.3e-07 32.1 1.6 4.6e-06 27.1 0.1 2.9 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|240102271|ref|YP_002958579.1| - 0.0005 20.4 0.0 0.0011 19.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain UPF0102 PF02021.17 gi|240102271|ref|YP_002958579.1| - 0.00063 19.9 0.1 0.0015 18.7 0.1 1.7 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 PAS_5 PF07310.13 gi|240102271|ref|YP_002958579.1| - 0.001 18.9 0.0 0.0025 17.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain AAA PF00004.29 gi|240102271|ref|YP_002958579.1| - 0.0056 17.1 0.0 0.023 15.1 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HTH_45 PF14947.6 gi|240102271|ref|YP_002958579.1| - 0.0072 16.3 0.0 0.02 14.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix RestrictionMunI PF11407.8 gi|240102271|ref|YP_002958579.1| - 0.013 15.2 0.1 0.058 13.1 0.0 2.0 2 0 0 2 2 2 0 Type II restriction enzyme MunI HTH_IclR PF09339.10 gi|240102271|ref|YP_002958579.1| - 0.016 15.0 0.0 0.1 12.4 0.0 2.4 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|240102271|ref|YP_002958579.1| - 0.017 14.9 0.0 0.045 13.6 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TniB PF05621.11 gi|240102271|ref|YP_002958579.1| - 0.12 11.7 0.0 0.36 10.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial TniB protein DUF104 PF01954.16 gi|240102272|ref|YP_002958580.1| - 1.1e-18 67.4 5.8 1.2e-18 67.3 5.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 PgaPase_1 PF06162.12 gi|240102272|ref|YP_002958580.1| - 0.048 13.4 0.1 0.052 13.3 0.1 1.1 1 0 0 1 1 1 0 Putative pyroglutamyl peptidase PgaPase_1 PIN PF01850.21 gi|240102273|ref|YP_002958581.1| - 5e-23 81.9 0.0 5.7e-23 81.7 0.0 1.0 1 0 0 1 1 1 1 PIN domain EamA PF00892.20 gi|240102274|ref|YP_002958582.1| - 5.7e-34 117.2 33.1 6.8e-19 68.4 13.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|240102274|ref|YP_002958582.1| - 0.001 18.5 4.6 0.032 13.6 0.3 2.3 2 1 0 2 2 2 2 Triose-phosphate Transporter family Multi_Drug_Res PF00893.19 gi|240102274|ref|YP_002958582.1| - 0.0024 18.5 2.8 0.0024 18.5 2.8 2.5 2 1 0 2 2 2 1 Small Multidrug Resistance protein CRT-like PF08627.10 gi|240102274|ref|YP_002958582.1| - 0.025 13.5 2.3 0.45 9.4 0.2 2.2 2 0 0 2 2 2 0 CRT-like, chloroquine-resistance transporter-like EmrE PF13536.6 gi|240102274|ref|YP_002958582.1| - 0.12 11.9 8.4 1 8.9 6.4 2.7 1 1 1 2 2 2 0 Putative multidrug resistance efflux transporter MciZ PF13072.6 gi|240102274|ref|YP_002958582.1| - 0.21 11.4 0.0 0.36 10.7 0.0 1.3 1 0 0 1 1 1 0 Mother cell inhibitor of FtsZ UAA PF08449.11 gi|240102274|ref|YP_002958582.1| - 4.6 6.4 9.8 0.94 8.6 1.8 2.2 2 0 0 2 2 2 0 UAA transporter family Lactamase_B_2 PF12706.7 gi|240102275|ref|YP_002958583.1| - 6e-26 91.2 0.2 7.7e-26 90.8 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|240102275|ref|YP_002958583.1| - 7.3e-15 55.5 2.2 1.1e-14 54.9 2.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|240102275|ref|YP_002958583.1| - 1.3e-06 28.4 0.1 2.6e-06 27.4 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|240102275|ref|YP_002958583.1| - 0.073 12.2 0.3 0.17 11.0 0.3 1.5 1 1 1 2 2 2 0 cAMP phosphodiesterases class-II Succ_CoA_lig PF13607.6 gi|240102276|ref|YP_002958584.1| - 7.7e-60 200.7 1.9 2.2e-57 192.7 0.3 3.5 3 1 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|240102276|ref|YP_002958584.1| - 7.2e-23 81.3 3.4 2.5e-22 79.6 0.4 2.7 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|240102276|ref|YP_002958584.1| - 2.1e-15 57.1 6.3 1.7e-14 54.3 2.3 2.9 2 1 1 3 3 3 1 CoA binding domain F420_oxidored PF03807.17 gi|240102276|ref|YP_002958584.1| - 0.0022 18.5 1.8 0.0045 17.5 0.4 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|240102276|ref|YP_002958584.1| - 0.0043 17.5 0.7 0.33 11.4 0.5 2.9 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Hydrolase_6 PF13344.6 gi|240102276|ref|YP_002958584.1| - 0.044 13.9 0.0 0.68 10.1 0.0 2.6 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase NAD_Gly3P_dh_N PF01210.23 gi|240102276|ref|YP_002958584.1| - 0.05 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|240102276|ref|YP_002958584.1| - 0.15 11.4 0.0 0.53 9.6 0.0 1.9 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HTH_5 PF01022.20 gi|240102277|ref|YP_002958585.1| - 5e-16 58.3 2.6 7.3e-16 57.8 0.3 2.4 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|240102277|ref|YP_002958585.1| - 1.5e-15 57.0 0.1 3.6e-15 55.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|240102277|ref|YP_002958585.1| - 4.3e-09 35.8 0.5 4.3e-09 35.8 0.5 1.9 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|240102277|ref|YP_002958585.1| - 3.2e-07 30.2 0.5 8.8e-07 28.8 0.5 1.8 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|240102277|ref|YP_002958585.1| - 1.3e-06 28.2 0.0 2.5e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|240102277|ref|YP_002958585.1| - 1.7e-06 27.8 0.9 3.7e-06 26.7 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.9 gi|240102277|ref|YP_002958585.1| - 1.7e-05 25.0 3.1 0.00078 19.7 0.1 2.2 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_29 PF13551.6 gi|240102277|ref|YP_002958585.1| - 7.2e-05 22.7 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix ArsR PF09824.9 gi|240102277|ref|YP_002958585.1| - 9.8e-05 22.0 2.2 0.00042 19.9 1.3 2.1 1 1 1 2 2 2 1 ArsR transcriptional regulator HTH_23 PF13384.6 gi|240102277|ref|YP_002958585.1| - 0.00013 21.6 0.0 0.00031 20.4 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|240102277|ref|YP_002958585.1| - 0.00054 20.0 0.0 0.0012 18.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|240102277|ref|YP_002958585.1| - 0.0006 19.7 0.5 0.0016 18.4 0.3 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|240102277|ref|YP_002958585.1| - 0.00083 19.1 0.3 0.00083 19.1 0.3 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|240102277|ref|YP_002958585.1| - 0.0011 19.1 0.4 0.0031 17.7 0.1 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_40 PF14493.6 gi|240102277|ref|YP_002958585.1| - 0.002 18.5 3.4 0.0023 18.3 0.7 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|240102277|ref|YP_002958585.1| - 0.0034 17.2 0.8 0.0034 17.2 0.8 2.8 1 1 2 3 3 3 1 TFIIE alpha subunit Sigma70_r4_2 PF08281.12 gi|240102277|ref|YP_002958585.1| - 0.0039 16.8 1.9 0.0055 16.4 0.2 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|240102277|ref|YP_002958585.1| - 0.0039 17.3 0.0 0.01 16.0 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|240102277|ref|YP_002958585.1| - 0.0047 17.4 0.6 0.016 15.7 0.2 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|240102277|ref|YP_002958585.1| - 0.0082 15.9 1.5 0.045 13.5 0.2 2.4 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|240102277|ref|YP_002958585.1| - 0.0085 16.4 0.1 0.021 15.2 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|240102277|ref|YP_002958585.1| - 0.0097 15.7 0.0 0.024 14.4 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|240102277|ref|YP_002958585.1| - 0.014 15.3 0.4 0.032 14.2 0.4 1.6 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.16 gi|240102277|ref|YP_002958585.1| - 0.014 14.9 0.2 0.038 13.5 0.2 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 mTERF PF02536.14 gi|240102277|ref|YP_002958585.1| - 0.015 14.3 0.9 0.91 8.4 0.1 2.3 2 1 0 2 2 2 0 mTERF MerR_1 PF13411.6 gi|240102277|ref|YP_002958585.1| - 0.033 14.3 0.8 1 9.5 0.0 2.7 2 1 0 2 2 2 0 MerR HTH family regulatory protein HTH_CodY PF08222.11 gi|240102277|ref|YP_002958585.1| - 0.071 12.7 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_17 PF12728.7 gi|240102277|ref|YP_002958585.1| - 0.079 13.2 0.0 0.2 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|240102277|ref|YP_002958585.1| - 0.082 12.9 1.2 0.46 10.5 0.2 2.4 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family AAA_23 PF13476.6 gi|240102277|ref|YP_002958585.1| - 0.096 13.2 6.1 0.14 12.7 6.1 1.2 1 0 0 1 1 1 0 AAA domain HTH_35 PF13693.6 gi|240102277|ref|YP_002958585.1| - 0.14 12.2 0.3 0.41 10.7 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF592 PF04574.13 gi|240102277|ref|YP_002958585.1| - 0.19 11.5 3.4 0.2 11.4 0.7 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF592) HTH_WhiA PF02650.14 gi|240102277|ref|YP_002958585.1| - 0.53 10.7 4.1 0.48 10.8 0.6 2.5 2 1 1 3 3 3 0 WhiA C-terminal HTH domain FeoB_Cyto PF17910.1 gi|240102277|ref|YP_002958585.1| - 0.57 10.8 5.3 0.28 11.7 1.9 2.2 2 1 0 2 2 2 0 FeoB cytosolic helical domain DUF211 PF02680.14 gi|240102278|ref|YP_002958586.1| - 4.7e-37 126.0 4.0 5.4e-37 125.8 4.0 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.26 gi|240102278|ref|YP_002958586.1| - 0.0044 17.4 0.6 0.0093 16.4 0.6 1.5 1 0 0 1 1 1 1 Heavy-metal-associated domain ACT PF01842.25 gi|240102278|ref|YP_002958586.1| - 0.064 13.1 0.3 0.12 12.2 0.3 1.5 1 0 0 1 1 1 0 ACT domain HTH_20 PF12840.7 gi|240102279|ref|YP_002958587.1| - 1.6e-14 53.7 0.3 5.6e-14 51.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|240102279|ref|YP_002958587.1| - 2.6e-14 52.8 0.4 1.3e-13 50.6 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|240102279|ref|YP_002958587.1| - 4.3e-09 36.1 1.2 8.6e-09 35.2 0.2 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|240102279|ref|YP_002958587.1| - 2e-08 34.0 0.2 7.1e-08 32.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|240102279|ref|YP_002958587.1| - 2.1e-08 33.6 0.0 5.7e-08 32.2 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|240102279|ref|YP_002958587.1| - 3.8e-08 33.2 0.4 1.6e-07 31.1 0.1 2.2 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|240102279|ref|YP_002958587.1| - 2e-06 27.5 0.0 4.9e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|240102279|ref|YP_002958587.1| - 2.6e-06 27.2 0.2 9e-06 25.5 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.6 gi|240102279|ref|YP_002958587.1| - 1.8e-05 24.4 0.4 4.1e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain DUF592 PF04574.13 gi|240102279|ref|YP_002958587.1| - 4.9e-05 23.1 0.5 0.00026 20.8 0.2 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF592) HTH_Crp_2 PF13545.6 gi|240102279|ref|YP_002958587.1| - 0.00013 21.9 0.4 0.0088 16.0 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain FUR PF01475.19 gi|240102279|ref|YP_002958587.1| - 0.00015 21.9 0.3 0.0003 20.9 0.2 1.7 1 1 0 1 1 1 1 Ferric uptake regulator family HTH_36 PF13730.6 gi|240102279|ref|YP_002958587.1| - 0.00078 19.4 0.1 0.0023 17.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|240102279|ref|YP_002958587.1| - 0.001 18.8 0.0 0.0024 17.6 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain ArsR PF09824.9 gi|240102279|ref|YP_002958587.1| - 0.0052 16.4 0.2 0.033 13.8 0.0 2.1 2 1 0 2 2 2 1 ArsR transcriptional regulator GntR PF00392.21 gi|240102279|ref|YP_002958587.1| - 0.0058 16.3 0.6 0.24 11.1 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|240102279|ref|YP_002958587.1| - 0.012 15.7 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|240102279|ref|YP_002958587.1| - 0.013 15.7 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.6 gi|240102279|ref|YP_002958587.1| - 0.014 15.5 0.1 0.035 14.3 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|240102279|ref|YP_002958587.1| - 0.018 15.1 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix PadR PF03551.14 gi|240102279|ref|YP_002958587.1| - 0.02 14.9 0.3 0.11 12.5 0.1 2.2 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|240102279|ref|YP_002958587.1| - 0.021 15.3 0.2 0.059 13.9 0.1 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|240102279|ref|YP_002958587.1| - 0.027 14.8 0.1 0.13 12.6 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator HTH_17 PF12728.7 gi|240102279|ref|YP_002958587.1| - 0.059 13.6 0.1 0.27 11.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1456 PF07308.13 gi|240102279|ref|YP_002958587.1| - 0.072 13.4 1.4 1.5 9.2 0.9 2.9 1 1 0 2 2 2 0 Protein of unknown function (DUF1456) DUF1939 PF09154.10 gi|240102280|ref|YP_002958588.1| - 1.6e-19 69.8 3.8 1.6e-19 69.8 3.8 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1939) Alpha-amylase PF00128.24 gi|240102280|ref|YP_002958588.1| - 1.1e-12 48.1 5.7 7.2e-12 45.5 5.7 2.2 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF4222 PF13973.6 gi|240102280|ref|YP_002958588.1| - 0.033 13.8 0.1 0.4 10.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4222) Aldo_ket_red PF00248.21 gi|240102280|ref|YP_002958588.1| - 0.063 12.5 0.4 8.9 5.4 0.0 2.3 2 0 0 2 2 2 0 Aldo/keto reductase family Glucos_trans_II PF14264.6 gi|240102281|ref|YP_002958589.1| - 0.016 14.6 20.7 0.0083 15.5 15.4 2.2 2 0 0 2 2 2 0 Glucosyl transferase GtrII FSAP_sig_propep PF03032.15 gi|240102281|ref|YP_002958589.1| - 0.56 10.3 1.3 1.4 9.0 1.3 1.7 1 0 0 1 1 1 0 Frog skin active peptide family signal and propeptide Carb_kinase PF01256.17 gi|240102282|ref|YP_002958590.1| - 5e-49 167.0 0.0 8.1e-49 166.3 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|240102282|ref|YP_002958590.1| - 2.6e-35 121.8 0.0 4.9e-35 120.9 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|240102282|ref|YP_002958590.1| - 0.00016 21.2 0.0 0.00033 20.1 0.0 1.5 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family Macro PF01661.21 gi|240102283|ref|YP_002958591.1| - 6.7e-35 119.7 0.1 9.2e-35 119.2 0.1 1.2 1 0 0 1 1 1 1 Macro domain GRDB PF07355.12 gi|240102283|ref|YP_002958591.1| - 0.0036 16.6 0.0 0.0047 16.2 0.0 1.2 1 0 0 1 1 1 1 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) Opi1 PF08618.10 gi|240102283|ref|YP_002958591.1| - 0.19 10.9 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Transcription factor Opi1 TFIIE_alpha PF02002.17 gi|240102284|ref|YP_002958592.1| - 8.9e-25 86.6 1.8 8.9e-25 86.6 1.8 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit TrmB PF01978.19 gi|240102284|ref|YP_002958592.1| - 0.00021 21.1 0.0 0.00047 20.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|240102284|ref|YP_002958592.1| - 0.0043 16.8 0.0 0.0091 15.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_9 PF08221.11 gi|240102284|ref|YP_002958592.1| - 0.013 15.5 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Sulfotransfer_2 PF03567.14 gi|240102284|ref|YP_002958592.1| - 0.015 15.3 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 Sulfotransferase family TF_Zn_Ribbon PF08271.12 gi|240102284|ref|YP_002958592.1| - 0.016 14.7 0.1 0.032 13.7 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding HTH_5 PF01022.20 gi|240102284|ref|YP_002958592.1| - 0.017 15.0 0.9 0.047 13.5 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Rad50_zn_hook PF04423.14 gi|240102284|ref|YP_002958592.1| - 0.02 14.7 0.3 0.02 14.7 0.3 2.5 3 0 0 3 3 3 0 Rad50 zinc hook motif Rrf2 PF02082.20 gi|240102284|ref|YP_002958592.1| - 0.03 14.7 0.0 0.055 13.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|240102284|ref|YP_002958592.1| - 0.03 14.3 0.0 0.078 13.0 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|240102284|ref|YP_002958592.1| - 0.047 13.3 0.2 1.3 8.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Sigma70_r3 PF04539.16 gi|240102284|ref|YP_002958592.1| - 0.067 13.3 0.2 0.067 13.3 0.2 2.0 3 0 0 3 3 2 0 Sigma-70 region 3 RNF220 PF15926.5 gi|240102284|ref|YP_002958592.1| - 0.094 12.3 2.1 0.11 12.1 0.5 1.9 2 0 0 2 2 2 0 E3 ubiquitin-protein ligase RNF220 Striatin PF08232.12 gi|240102284|ref|YP_002958592.1| - 0.19 12.3 6.4 1 10.0 4.6 2.1 2 0 0 2 2 2 0 Striatin family Prefoldin_2 PF01920.20 gi|240102284|ref|YP_002958592.1| - 6.2 6.8 10.3 0.084 12.8 0.8 2.6 3 0 0 3 3 3 0 Prefoldin subunit DUF2110 PF09883.9 gi|240102285|ref|YP_002958593.1| - 3.1e-70 236.3 0.1 3.5e-70 236.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) ParA PF10609.9 gi|240102287|ref|YP_002958595.1| - 3.6e-98 327.9 0.5 4.3e-98 327.7 0.5 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|240102287|ref|YP_002958595.1| - 7.8e-16 58.3 0.0 1.7e-15 57.2 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|240102287|ref|YP_002958595.1| - 2.8e-13 50.2 0.5 4.2e-12 46.3 0.5 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|240102287|ref|YP_002958595.1| - 5e-08 32.6 0.1 8e-07 28.6 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|240102287|ref|YP_002958595.1| - 7.3e-07 28.7 3.7 1.8e-05 24.1 0.3 2.4 2 1 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|240102287|ref|YP_002958595.1| - 4.8e-06 26.2 0.8 1.9e-05 24.2 0.8 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|240102287|ref|YP_002958595.1| - 2.1e-05 24.2 0.0 3.9e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|240102287|ref|YP_002958595.1| - 3.2e-05 23.9 0.1 5.5e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase VirC1 PF07015.11 gi|240102287|ref|YP_002958595.1| - 0.0009 18.6 0.1 0.0016 17.8 0.1 1.3 1 0 0 1 1 1 1 VirC1 protein CLP1_P PF16575.5 gi|240102287|ref|YP_002958595.1| - 0.0018 18.1 0.0 0.0039 17.0 0.0 1.6 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop RsgA_GTPase PF03193.16 gi|240102287|ref|YP_002958595.1| - 0.0053 16.7 0.1 0.014 15.3 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase PhnA_Zn_Ribbon PF08274.12 gi|240102287|ref|YP_002958595.1| - 0.0056 16.6 0.2 0.0082 16.1 0.2 1.2 1 0 0 1 1 1 1 PhnA Zinc-Ribbon MeaB PF03308.16 gi|240102287|ref|YP_002958595.1| - 0.0078 15.2 0.1 0.02 13.9 0.1 1.7 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|240102287|ref|YP_002958595.1| - 0.01 15.5 0.2 0.022 14.4 0.2 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 gi|240102287|ref|YP_002958595.1| - 0.013 15.0 0.3 0.039 13.4 0.3 1.8 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AAA_16 PF13191.6 gi|240102287|ref|YP_002958595.1| - 0.014 15.8 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain DnaB_C PF03796.15 gi|240102287|ref|YP_002958595.1| - 0.021 14.1 0.0 0.032 13.6 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain NTPase_1 PF03266.15 gi|240102287|ref|YP_002958595.1| - 0.022 14.7 0.1 0.05 13.5 0.1 1.6 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.6 gi|240102287|ref|YP_002958595.1| - 0.024 15.2 0.1 0.062 13.8 0.1 1.7 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.9 gi|240102287|ref|YP_002958595.1| - 0.031 13.5 0.2 0.053 12.7 0.2 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_30 PF13604.6 gi|240102287|ref|YP_002958595.1| - 0.044 13.5 0.3 0.14 11.9 0.2 1.8 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|240102287|ref|YP_002958595.1| - 0.067 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 IstB_IS21 PF01695.17 gi|240102287|ref|YP_002958595.1| - 0.07 12.8 0.1 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein MobB PF03205.14 gi|240102287|ref|YP_002958595.1| - 0.072 13.0 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.22 gi|240102287|ref|YP_002958595.1| - 0.084 13.3 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase zinc_ribbon_2 PF13240.6 gi|240102287|ref|YP_002958595.1| - 0.087 12.6 0.2 0.14 11.9 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain NB-ARC PF00931.22 gi|240102287|ref|YP_002958595.1| - 0.13 11.4 0.0 0.29 10.3 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|240102287|ref|YP_002958595.1| - 0.19 12.0 0.0 0.65 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AMP-binding PF00501.28 gi|240102288|ref|YP_002958596.1| - 1.5e-89 300.6 0.0 1.8e-89 300.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|240102288|ref|YP_002958596.1| - 1.5e-28 99.6 1.3 1.5e-28 99.6 1.3 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|240102288|ref|YP_002958596.1| - 3.4e-22 78.1 2.6 3.4e-22 78.1 2.6 2.2 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus CbiA PF01656.23 gi|240102289|ref|YP_002958597.1| - 3.4e-12 46.5 0.0 5.4e-12 45.9 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|240102289|ref|YP_002958597.1| - 8.7e-10 38.5 0.6 1.3e-09 37.9 0.2 1.4 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|240102289|ref|YP_002958597.1| - 1.3e-07 31.7 0.0 1.9e-07 31.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|240102289|ref|YP_002958597.1| - 1.5e-07 31.0 0.2 3.6e-07 29.7 0.1 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|240102289|ref|YP_002958597.1| - 2.2e-07 30.6 0.0 4.7e-05 23.0 0.0 2.6 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ APS_kinase PF01583.20 gi|240102289|ref|YP_002958597.1| - 4e-05 23.6 0.0 7.1e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase Fer4_NifH PF00142.18 gi|240102289|ref|YP_002958597.1| - 0.00017 21.1 0.1 0.00027 20.5 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 gi|240102289|ref|YP_002958597.1| - 0.00036 20.4 0.0 0.0046 16.8 0.0 2.4 3 0 0 3 3 3 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|240102289|ref|YP_002958597.1| - 0.00095 18.8 0.0 0.0058 16.3 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|240102289|ref|YP_002958597.1| - 0.0011 19.3 0.0 0.0015 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain MipZ PF09140.11 gi|240102289|ref|YP_002958597.1| - 0.0038 16.6 0.0 0.0062 15.9 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ DUF87 PF01935.17 gi|240102289|ref|YP_002958597.1| - 0.0041 17.2 1.0 0.016 15.3 0.1 2.2 2 1 1 3 3 3 1 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|240102289|ref|YP_002958597.1| - 0.0042 16.4 0.0 0.0067 15.7 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin MeaB PF03308.16 gi|240102289|ref|YP_002958597.1| - 0.0048 15.9 0.0 0.0091 15.0 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB KTI12 PF08433.10 gi|240102289|ref|YP_002958597.1| - 0.0089 15.5 0.1 0.017 14.6 0.0 1.4 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_10 PF12846.7 gi|240102289|ref|YP_002958597.1| - 0.0098 14.8 0.0 0.015 14.2 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_24 PF13479.6 gi|240102289|ref|YP_002958597.1| - 0.01 15.5 0.1 0.034 13.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|240102289|ref|YP_002958597.1| - 0.022 14.1 0.0 0.032 13.6 0.0 1.5 1 1 0 1 1 1 0 KaiC Thymidylate_kin PF02223.17 gi|240102289|ref|YP_002958597.1| - 0.03 14.0 0.0 0.62 9.7 0.0 2.7 3 0 0 3 3 3 0 Thymidylate kinase VirC1 PF07015.11 gi|240102289|ref|YP_002958597.1| - 0.063 12.6 0.0 0.097 12.0 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein NikR_C PF08753.11 gi|240102290|ref|YP_002958598.1| - 1.8e-33 114.5 4.2 2.6e-33 114.0 4.2 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|240102290|ref|YP_002958598.1| - 2e-09 37.0 0.2 2e-09 37.0 0.2 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HhH-GPD PF00730.25 gi|240102290|ref|YP_002958598.1| - 0.019 15.4 0.1 3.4 8.1 0.0 2.1 1 1 1 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein HicB_lk_antitox PF15919.5 gi|240102290|ref|YP_002958598.1| - 0.025 14.7 0.0 0.15 12.2 0.0 2.0 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system HypA PF01155.19 gi|240102291|ref|YP_002958599.1| - 1.1e-29 102.7 0.4 1.2e-29 102.5 0.4 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TFIIS_C PF01096.18 gi|240102291|ref|YP_002958599.1| - 0.00073 19.3 3.7 0.06 13.2 1.1 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.12 gi|240102291|ref|YP_002958599.1| - 0.0022 17.5 0.2 0.93 9.1 0.0 2.4 2 0 0 2 2 2 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|240102291|ref|YP_002958599.1| - 0.0025 17.8 0.3 1.6 8.8 0.1 2.2 2 0 0 2 2 2 2 Transposase zinc-ribbon domain MCM_OB PF17207.3 gi|240102291|ref|YP_002958599.1| - 0.0053 16.6 0.1 0.0084 16.0 0.1 1.4 1 1 0 1 1 1 1 MCM OB domain DUF4379 PF14311.6 gi|240102291|ref|YP_002958599.1| - 0.0058 17.0 2.2 0.019 15.3 2.2 1.8 1 1 1 2 2 2 1 Probable Zinc-ribbon domain Lar_restr_allev PF14354.6 gi|240102291|ref|YP_002958599.1| - 0.007 16.7 0.1 2.5 8.6 0.0 2.2 2 0 0 2 2 2 1 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.6 gi|240102291|ref|YP_002958599.1| - 0.0093 15.9 2.8 0.12 12.3 0.3 2.4 2 0 0 2 2 2 1 zinc-ribbon domain UPF0547 PF10571.9 gi|240102291|ref|YP_002958599.1| - 0.0095 16.0 2.9 0.48 10.5 0.1 2.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|240102291|ref|YP_002958599.1| - 0.024 14.4 4.2 2.1 8.2 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Trm112p PF03966.16 gi|240102291|ref|YP_002958599.1| - 0.024 15.2 0.0 2.5 8.7 0.0 2.2 2 0 0 2 2 2 0 Trm112p-like protein eIF-5_eIF-2B PF01873.17 gi|240102291|ref|YP_002958599.1| - 0.026 14.4 0.5 1.6 8.7 0.0 2.6 2 1 1 3 3 3 0 Domain found in IF2B/IF5 DUF1610 PF07754.11 gi|240102291|ref|YP_002958599.1| - 0.026 14.5 3.6 3.2 7.8 0.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.6 gi|240102291|ref|YP_002958599.1| - 0.037 13.5 1.9 1.3 8.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|240102291|ref|YP_002958599.1| - 0.038 13.7 0.9 0.43 10.3 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.12 gi|240102291|ref|YP_002958599.1| - 0.042 13.8 1.1 9.2 6.3 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TackOD1 PF18551.1 gi|240102291|ref|YP_002958599.1| - 0.049 13.3 1.0 4.3 7.0 0.1 2.2 1 1 0 2 2 2 0 Thaumarchaeal output domain 1 DUF2318 PF10080.9 gi|240102291|ref|YP_002958599.1| - 0.051 13.7 0.1 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) zf-ZPR1 PF03367.13 gi|240102291|ref|YP_002958599.1| - 0.052 13.4 1.3 0.37 10.6 0.9 2.2 1 1 1 2 2 2 0 ZPR1 zinc-finger domain Zn-ribbon_8 PF09723.10 gi|240102291|ref|YP_002958599.1| - 0.057 13.5 5.6 2 8.6 5.6 2.4 1 1 0 1 1 1 0 Zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|240102291|ref|YP_002958599.1| - 0.062 13.2 2.7 4.1 7.4 0.0 2.9 3 0 0 3 3 2 0 Zinc finger found in FPG and IleRS zf-ISL3 PF14690.6 gi|240102291|ref|YP_002958599.1| - 0.067 13.9 0.2 16 6.3 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.16 gi|240102291|ref|YP_002958599.1| - 0.068 13.1 0.6 9.2 6.2 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-3CxxC PF13695.6 gi|240102291|ref|YP_002958599.1| - 0.07 13.6 0.1 0.14 12.7 0.1 1.5 1 0 0 1 1 1 0 Zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|240102291|ref|YP_002958599.1| - 0.079 12.9 0.3 2.7 8.0 0.1 2.3 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_13 PF09855.9 gi|240102291|ref|YP_002958599.1| - 0.11 12.7 0.2 7.2 6.9 0.0 2.4 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ogr_Delta PF04606.12 gi|240102291|ref|YP_002958599.1| - 0.36 10.8 3.7 3 7.9 0.0 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF35_N PF12172.8 gi|240102291|ref|YP_002958599.1| - 0.64 9.9 5.5 1.4 8.9 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_ligase_ZBD PF03119.16 gi|240102291|ref|YP_002958599.1| - 1.3 9.1 6.0 16 5.6 2.0 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Rubredoxin_2 PF18073.1 gi|240102291|ref|YP_002958599.1| - 3 7.7 5.9 3.1 7.6 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain ParA PF10609.9 gi|240102292|ref|YP_002958600.1| - 9.1e-56 189.0 0.0 5.4e-55 186.5 0.0 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|240102292|ref|YP_002958600.1| - 1.4e-14 54.3 0.0 1.9e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|240102292|ref|YP_002958600.1| - 1.3e-11 44.7 0.1 5.2e-07 29.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|240102292|ref|YP_002958600.1| - 1.5e-08 34.2 4.2 4.9e-06 25.9 0.2 2.7 2 1 1 3 3 3 2 Anion-transporting ATPase MipZ PF09140.11 gi|240102292|ref|YP_002958600.1| - 3.4e-07 29.8 0.0 5.8e-07 29.1 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|240102292|ref|YP_002958600.1| - 2e-06 27.5 0.0 0.002 17.7 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|240102292|ref|YP_002958600.1| - 3.4e-05 23.8 1.9 0.055 13.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain MeaB PF03308.16 gi|240102292|ref|YP_002958600.1| - 0.01 14.9 0.1 0.018 14.1 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB HAS-barrel PF09378.10 gi|240102292|ref|YP_002958600.1| - 0.04 14.1 0.0 0.073 13.2 0.0 1.5 1 0 0 1 1 1 0 HAS barrel domain AAA_25 PF13481.6 gi|240102292|ref|YP_002958600.1| - 0.085 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|240102292|ref|YP_002958600.1| - 0.1 11.9 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein NAD_Gly3P_dh_N PF01210.23 gi|240102292|ref|YP_002958600.1| - 0.18 11.8 0.2 4.3 7.3 0.1 2.6 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CLP1_P PF16575.5 gi|240102292|ref|YP_002958600.1| - 0.19 11.5 0.0 0.36 10.6 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop HycI PF01750.18 gi|240102294|ref|YP_002958602.1| - 2.6e-14 53.1 0.0 5.9e-14 52.0 0.0 1.5 2 0 0 2 2 2 1 Hydrogenase maturation protease NTP_transf_3 PF12804.7 gi|240102297|ref|YP_002958605.1| - 1.4e-30 106.7 0.0 1.7e-30 106.5 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|240102297|ref|YP_002958605.1| - 2.1e-06 27.6 0.0 2.6e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|240102297|ref|YP_002958605.1| - 6.1e-05 23.0 0.0 0.002 18.1 0.0 2.1 2 0 0 2 2 2 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|240102297|ref|YP_002958605.1| - 0.0057 16.3 0.1 0.012 15.2 0.1 1.5 1 1 0 1 1 1 1 Nucleotidyl transferase RST PF12174.8 gi|240102298|ref|YP_002958606.1| - 0.012 15.5 0.0 0.052 13.5 0.0 1.9 2 0 0 2 2 2 0 RCD1-SRO-TAF4 (RST) plant domain Oxidored_q6 PF01058.22 gi|240102300|ref|YP_002958608.1| - 6.8e-27 93.9 0.0 1.1e-26 93.2 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Herpes_env PF01673.18 gi|240102300|ref|YP_002958608.1| - 0.27 10.1 0.0 0.39 9.6 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus putative major envelope glycoprotein Fer4 PF00037.27 gi|240102301|ref|YP_002958609.1| - 1.7e-16 59.3 20.5 2.3e-09 36.7 5.8 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102301|ref|YP_002958609.1| - 1.5e-15 57.5 8.9 9.2e-15 55.0 5.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240102301|ref|YP_002958609.1| - 1.6e-15 57.0 33.6 7.8e-10 38.8 10.8 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|240102301|ref|YP_002958609.1| - 1.9e-13 49.8 17.4 7.9e-08 32.0 4.8 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|240102301|ref|YP_002958609.1| - 5.2e-12 45.1 19.4 2.4e-07 30.4 4.3 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|240102301|ref|YP_002958609.1| - 2.3e-11 43.6 16.1 6.7e-06 26.1 4.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|240102301|ref|YP_002958609.1| - 2.7e-10 40.2 22.3 1.3e-09 38.1 8.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240102301|ref|YP_002958609.1| - 8.2e-10 39.5 12.3 8.2e-05 23.5 5.5 2.9 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|240102301|ref|YP_002958609.1| - 5.4e-08 33.2 12.5 3.1e-05 24.3 10.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240102301|ref|YP_002958609.1| - 2.1e-07 30.9 17.9 1.3e-05 25.3 1.3 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240102301|ref|YP_002958609.1| - 6.4e-06 26.6 13.0 0.024 15.1 12.7 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|240102301|ref|YP_002958609.1| - 3.8e-05 24.3 27.6 0.0017 19.2 7.1 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|240102301|ref|YP_002958609.1| - 0.00019 22.1 8.0 0.046 14.5 0.4 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_20 PF14691.6 gi|240102301|ref|YP_002958609.1| - 0.00027 20.7 2.4 0.00027 20.7 2.4 2.3 1 1 1 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.6 gi|240102301|ref|YP_002958609.1| - 0.0018 18.8 17.2 0.019 15.5 4.1 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|240102301|ref|YP_002958609.1| - 0.0029 17.8 14.0 0.007 16.6 1.8 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|240102301|ref|YP_002958609.1| - 0.011 16.6 13.7 0.12 13.2 0.6 3.1 4 1 1 5 5 4 0 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|240102301|ref|YP_002958609.1| - 0.23 11.6 5.5 0.13 12.4 3.3 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|240102301|ref|YP_002958609.1| - 0.26 11.4 7.0 0.82 9.8 1.7 2.9 1 1 2 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S c-SKI_SMAD_bind PF08782.10 gi|240102301|ref|YP_002958609.1| - 6 7.2 6.8 33 4.8 2.0 2.5 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Complex1_49kDa PF00346.19 gi|240102302|ref|YP_002958610.1| - 6.7e-60 202.5 0.5 9.9e-42 142.9 0.4 2.4 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|240102302|ref|YP_002958610.1| - 3e-23 82.7 0.2 2.8e-22 79.6 0.1 2.4 3 0 0 3 3 3 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|240102302|ref|YP_002958610.1| - 9.6e-17 61.0 1.2 1.4e-12 47.3 0.1 2.9 3 1 0 3 3 3 2 Nickel-dependent hydrogenase DUF1013 PF06242.11 gi|240102302|ref|YP_002958610.1| - 0.14 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1013) Fer4_14 PF13394.6 gi|240102302|ref|YP_002958610.1| - 0.17 12.0 0.6 0.39 10.9 0.0 1.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain NADHdh PF00146.21 gi|240102303|ref|YP_002958611.1| - 9.5e-45 153.2 18.7 1.2e-44 152.9 18.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|240102304|ref|YP_002958612.1| - 9.3e-48 162.9 25.2 9.3e-48 162.9 25.2 2.5 2 2 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|240102304|ref|YP_002958612.1| - 0.0011 18.9 3.3 0.0014 18.7 0.5 2.7 2 1 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|240102305|ref|YP_002958613.1| - 3.3e-33 115.1 24.7 6.5e-33 114.2 24.7 1.5 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|240102305|ref|YP_002958613.1| - 0.00022 21.2 0.0 0.0024 17.9 0.0 3.0 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Fer4_11 PF13247.6 gi|240102306|ref|YP_002958614.1| - 2.2e-28 98.3 7.2 2.2e-28 98.3 7.2 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|240102306|ref|YP_002958614.1| - 1.2e-14 54.6 26.2 6.8e-07 29.8 10.4 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|240102306|ref|YP_002958614.1| - 1.5e-13 49.9 37.4 1.6e-06 27.6 3.2 5.6 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|240102306|ref|YP_002958614.1| - 3.2e-13 48.9 28.9 0.00014 21.7 1.9 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|240102306|ref|YP_002958614.1| - 6.1e-13 48.2 38.1 1.2e-05 25.1 3.0 4.9 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|240102306|ref|YP_002958614.1| - 3.2e-11 43.2 26.0 2.3e-06 27.7 8.1 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102306|ref|YP_002958614.1| - 4.5e-10 39.5 27.6 1.8e-05 24.8 9.8 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240102306|ref|YP_002958614.1| - 2.6e-07 31.5 24.8 0.052 14.5 1.0 4.6 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|240102306|ref|YP_002958614.1| - 3.3e-06 27.2 36.9 0.0019 18.6 3.8 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240102306|ref|YP_002958614.1| - 1.7e-05 25.3 23.2 0.17 12.5 1.6 4.2 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|240102306|ref|YP_002958614.1| - 2.8e-05 24.8 42.5 0.08 13.9 5.5 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240102306|ref|YP_002958614.1| - 0.00051 20.1 28.9 0.0029 17.7 8.5 3.6 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|240102306|ref|YP_002958614.1| - 0.23 12.2 0.5 0.23 12.2 0.5 4.1 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|240102306|ref|YP_002958614.1| - 0.31 11.5 34.3 0.78 10.2 3.5 4.3 2 2 3 5 5 5 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|240102306|ref|YP_002958614.1| - 1.5 9.0 20.9 0.074 13.3 7.2 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|240102307|ref|YP_002958615.1| - 1.4e-96 324.1 0.0 1.7e-96 323.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|240102307|ref|YP_002958615.1| - 3.9e-31 107.3 0.1 7.2e-31 106.5 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|240102307|ref|YP_002958615.1| - 8.1e-13 48.1 0.2 1.6e-12 47.2 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|240102307|ref|YP_002958615.1| - 0.0013 18.8 0.0 0.0036 17.5 0.0 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain TetR_N PF00440.23 gi|240102308|ref|YP_002958616.1| - 1.1e-20 73.1 0.3 1.9e-20 72.4 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HNOB PF07700.15 gi|240102308|ref|YP_002958616.1| - 0.00012 22.1 0.0 0.00018 21.5 0.0 1.2 1 0 0 1 1 1 1 Haem-NO-binding HTH_Tnp_1_2 PF13022.6 gi|240102308|ref|YP_002958616.1| - 0.0038 17.4 0.0 0.007 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase DUF302 PF03625.14 gi|240102309|ref|YP_002958617.1| - 2.2e-06 27.4 0.0 3.8e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF302 HupF_HypC PF01455.18 gi|240102310|ref|YP_002958618.1| - 2.3e-14 53.3 0.2 2.6e-14 53.1 0.2 1.1 1 0 0 1 1 1 1 HupF/HypC family tRNA_anti-codon PF01336.25 gi|240102310|ref|YP_002958618.1| - 0.009 16.0 0.4 0.022 14.7 0.3 1.7 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain DUF2097 PF09870.9 gi|240102310|ref|YP_002958618.1| - 0.093 13.0 0.2 0.16 12.2 0.1 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2097) HupF_HypC PF01455.18 gi|240102311|ref|YP_002958619.1| - 9.4e-24 83.3 0.1 1.1e-23 83.1 0.1 1.1 1 0 0 1 1 1 1 HupF/HypC family HypD PF01924.16 gi|240102312|ref|YP_002958620.1| - 5.3e-136 453.3 0.0 6.1e-136 453.1 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Usp PF00582.26 gi|240102312|ref|YP_002958620.1| - 0.033 14.7 0.0 0.23 11.9 0.0 2.2 2 1 1 3 3 3 0 Universal stress protein family Sua5_yciO_yrdC PF01300.18 gi|240102313|ref|YP_002958621.1| - 1.4e-45 155.0 0.0 2.2e-45 154.4 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|240102313|ref|YP_002958621.1| - 1.4e-32 111.2 16.4 1.7e-16 59.7 3.0 2.4 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|240102313|ref|YP_002958621.1| - 8.8e-30 103.4 0.1 1.6e-29 102.6 0.1 1.4 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|240102313|ref|YP_002958621.1| - 7.9e-25 87.1 0.0 2.2e-24 85.6 0.0 1.8 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|240102313|ref|YP_002958621.1| - 4.5e-09 36.4 0.7 1.4e-06 28.2 0.0 2.3 2 0 0 2 2 2 2 Glycoprotease family BcrAD_BadFG PF01869.20 gi|240102313|ref|YP_002958621.1| - 0.0063 16.0 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Carbam_trans_N PF02543.15 gi|240102313|ref|YP_002958621.1| - 0.024 14.3 0.1 0.87 9.2 0.0 2.2 2 0 0 2 2 2 0 Carbamoyltransferase N-terminus Lar_restr_allev PF14354.6 gi|240102313|ref|YP_002958621.1| - 0.055 13.8 0.9 2.3 8.7 0.2 2.5 2 0 0 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|240102313|ref|YP_002958621.1| - 0.069 13.3 6.3 0.57 10.4 1.0 3.1 3 0 0 3 3 3 0 Zinc ribbon domain DZR PF12773.7 gi|240102313|ref|YP_002958621.1| - 0.079 13.0 2.0 8.5 6.5 0.1 2.3 2 0 0 2 2 2 0 Double zinc ribbon AP_endonuc_2 PF01261.24 gi|240102313|ref|YP_002958621.1| - 0.13 11.7 0.4 4.8 6.6 0.0 3.1 3 0 0 3 3 3 0 Xylose isomerase-like TIM barrel NMD3 PF04981.13 gi|240102313|ref|YP_002958621.1| - 0.29 10.6 2.9 0.61 9.5 0.2 2.1 1 1 1 2 2 2 0 NMD3 family zinc_ribbon_15 PF17032.5 gi|240102313|ref|YP_002958621.1| - 0.77 10.5 2.9 1.8 9.3 1.9 2.2 2 1 0 2 2 1 0 zinc-ribbon family PIN PF01850.21 gi|240102315|ref|YP_002958623.1| - 9.3e-10 39.1 0.7 1.1e-08 35.6 0.2 2.0 1 1 1 2 2 2 1 PIN domain DUF5615 PF18480.1 gi|240102315|ref|YP_002958623.1| - 0.002 17.8 0.0 0.0043 16.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) NTP_transf_2 PF01909.23 gi|240102316|ref|YP_002958624.1| - 1.1e-14 54.4 0.5 1.3e-14 54.2 0.5 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|240102316|ref|YP_002958624.1| - 5.4e-10 39.2 0.0 6e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|240102316|ref|YP_002958624.1| - 1.3e-06 28.5 0.2 1.6e-06 28.3 0.2 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.13 gi|240102316|ref|YP_002958624.1| - 0.14 12.0 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|240102317|ref|YP_002958625.1| - 1.1e-23 83.6 1.2 1.2e-23 83.4 1.2 1.0 1 0 0 1 1 1 1 HEPN domain AIRS_C PF02769.22 gi|240102318|ref|YP_002958626.1| - 1.4e-32 112.9 2.3 1.4e-32 112.9 2.3 1.5 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|240102318|ref|YP_002958626.1| - 7.2e-18 65.0 0.3 1.6e-17 63.9 0.3 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TPP_enzyme_C PF02775.21 gi|240102319|ref|YP_002958627.1| - 2.6e-26 92.2 1.5 4.3e-26 91.5 0.3 2.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|240102319|ref|YP_002958627.1| - 0.012 14.8 0.2 0.021 14.0 0.2 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Rep_1B PF17873.1 gi|240102319|ref|YP_002958627.1| - 0.075 12.9 0.4 0.36 10.7 0.0 2.2 2 0 0 2 2 2 0 Replicase polyprotein 1ab POR_N PF01855.19 gi|240102320|ref|YP_002958628.1| - 3.2e-80 269.2 0.2 4.5e-80 268.7 0.2 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|240102320|ref|YP_002958628.1| - 1.2e-27 96.2 0.1 2.3e-27 95.3 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|240102320|ref|YP_002958628.1| - 2.4e-06 27.4 0.3 5.8e-06 26.2 0.1 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|240102321|ref|YP_002958629.1| - 2e-14 52.7 15.7 1e-08 34.6 5.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|240102321|ref|YP_002958629.1| - 9.1e-12 44.5 14.1 1.9e-06 27.7 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240102321|ref|YP_002958629.1| - 5.7e-11 42.4 5.6 7.8e-11 41.9 5.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102321|ref|YP_002958629.1| - 8.4e-09 35.0 11.5 0.00016 21.5 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102321|ref|YP_002958629.1| - 3.9e-08 33.8 9.8 6.8e-08 33.0 9.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240102321|ref|YP_002958629.1| - 2.6e-07 31.5 7.6 0.00082 20.3 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|240102321|ref|YP_002958629.1| - 6e-07 29.5 16.8 2.5e-05 24.3 10.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102321|ref|YP_002958629.1| - 1.6e-06 28.1 21.6 0.00014 21.9 11.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240102321|ref|YP_002958629.1| - 1.2e-05 25.4 12.0 0.0016 18.8 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|240102321|ref|YP_002958629.1| - 0.0045 17.4 11.7 0.29 11.6 3.6 2.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|240102321|ref|YP_002958629.1| - 0.0049 17.4 11.3 0.38 11.3 1.4 2.2 1 1 2 3 3 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|240102321|ref|YP_002958629.1| - 0.013 16.2 9.4 0.23 12.2 3.5 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|240102321|ref|YP_002958629.1| - 0.15 12.9 9.5 0.29 12.0 1.4 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|240102321|ref|YP_002958629.1| - 0.46 11.1 13.1 2 9.0 1.9 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|240102321|ref|YP_002958629.1| - 2.5 9.2 16.5 2.8 9.1 4.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain TPP_enzyme_C PF02775.21 gi|240102322|ref|YP_002958630.1| - 1.5e-20 73.5 0.1 2.4e-20 72.9 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|240102323|ref|YP_002958631.1| - 5.7e-76 255.3 3.0 7.4e-76 254.9 3.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|240102323|ref|YP_002958631.1| - 2.1e-33 114.7 0.0 4.9e-33 113.5 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|240102323|ref|YP_002958631.1| - 7.4e-05 22.6 0.0 0.00021 21.2 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|240102323|ref|YP_002958631.1| - 0.0019 17.8 1.2 0.0034 17.0 1.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|240102324|ref|YP_002958632.1| - 8.9e-15 53.8 18.8 6.3e-09 35.3 5.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102324|ref|YP_002958632.1| - 5.1e-10 39.8 22.8 2.9e-07 31.0 11.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|240102324|ref|YP_002958632.1| - 8.3e-10 38.7 9.2 1.2e-09 38.1 9.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|240102324|ref|YP_002958632.1| - 2.1e-09 37.0 16.0 6.1e-06 26.1 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|240102324|ref|YP_002958632.1| - 1.6e-07 32.1 11.2 0.00012 22.9 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|240102324|ref|YP_002958632.1| - 2.9e-07 30.6 20.0 2.4e-05 24.4 12.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102324|ref|YP_002958632.1| - 3.3e-07 30.3 23.1 6.2e-05 23.0 12.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102324|ref|YP_002958632.1| - 3.4e-07 30.0 10.4 0.00029 20.7 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240102324|ref|YP_002958632.1| - 0.00019 21.9 6.3 0.068 13.7 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|240102324|ref|YP_002958632.1| - 0.00027 21.4 9.9 0.028 15.0 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|240102324|ref|YP_002958632.1| - 0.00043 21.0 5.7 0.0062 17.2 0.7 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|240102324|ref|YP_002958632.1| - 0.014 15.9 13.1 0.22 12.1 3.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|240102324|ref|YP_002958632.1| - 0.097 13.1 13.3 0.11 13.0 2.4 2.2 1 1 2 3 3 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|240102324|ref|YP_002958632.1| - 0.39 10.9 6.9 0.81 9.9 6.9 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|240102324|ref|YP_002958632.1| - 0.96 10.3 10.9 0.94 10.4 2.3 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR PF01558.18 gi|240102325|ref|YP_002958633.1| - 2.3e-44 151.6 0.7 2.6e-44 151.4 0.7 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase MAF_flag10 PF01973.18 gi|240102325|ref|YP_002958633.1| - 0.0094 15.7 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Cohesin PF00963.18 gi|240102325|ref|YP_002958633.1| - 0.014 15.6 0.3 0.021 15.1 0.3 1.4 1 1 0 1 1 1 0 Cohesin domain PHO4 PF01384.20 gi|240102326|ref|YP_002958634.1| - 7.8e-71 238.9 34.8 3.1e-70 236.9 34.8 1.8 1 1 0 1 1 1 1 Phosphate transporter family GTP-bdg_N PF13167.6 gi|240102327|ref|YP_002958635.1| - 4.8e-24 84.9 0.3 1.7e-23 83.1 0.0 2.2 2 1 0 2 2 2 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|240102327|ref|YP_002958635.1| - 5.9e-23 81.1 0.0 1.9e-22 79.5 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|240102327|ref|YP_002958635.1| - 6.9e-18 65.0 6.6 6.9e-18 65.0 6.6 2.3 2 0 0 2 2 2 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 gi|240102327|ref|YP_002958635.1| - 9.6e-11 41.4 0.1 2.3e-10 40.2 0.1 1.6 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|240102327|ref|YP_002958635.1| - 6.4e-08 32.8 0.0 0.00022 21.3 0.0 2.7 1 1 1 2 2 2 2 Dynamin family RsgA_GTPase PF03193.16 gi|240102327|ref|YP_002958635.1| - 8.5e-08 32.3 1.1 0.011 15.6 0.0 3.0 3 0 0 3 3 3 2 RsgA GTPase GTP_EFTU PF00009.27 gi|240102327|ref|YP_002958635.1| - 1.1e-07 31.6 0.0 5.6e-06 26.0 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|240102327|ref|YP_002958635.1| - 1.5e-05 24.7 1.5 0.0014 18.3 0.1 2.4 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.21 gi|240102327|ref|YP_002958635.1| - 7.5e-05 22.2 1.0 0.00035 20.1 1.0 2.1 1 1 0 1 1 1 1 ADP-ribosylation factor family Ras PF00071.22 gi|240102327|ref|YP_002958635.1| - 0.0021 17.6 0.0 0.0052 16.4 0.0 1.6 1 1 0 1 1 1 1 Ras family ABC_tran PF00005.27 gi|240102327|ref|YP_002958635.1| - 0.0039 17.7 0.0 0.0099 16.4 0.0 1.8 1 1 0 1 1 1 1 ABC transporter NOG1 PF06858.14 gi|240102327|ref|YP_002958635.1| - 0.013 15.2 0.2 0.048 13.4 0.2 2.0 1 1 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) Roc PF08477.13 gi|240102327|ref|YP_002958635.1| - 0.014 15.7 0.1 0.16 12.2 0.1 2.2 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|240102327|ref|YP_002958635.1| - 0.016 14.9 0.4 4.1 7.2 0.0 2.5 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation APS_kinase PF01583.20 gi|240102327|ref|YP_002958635.1| - 0.019 14.8 0.8 0.54 10.1 0.1 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase ATP_bind_1 PF03029.17 gi|240102327|ref|YP_002958635.1| - 0.05 13.4 0.1 0.58 9.9 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF5132 PF17195.4 gi|240102327|ref|YP_002958635.1| - 0.063 13.4 0.7 0.18 11.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF5132) MMR_HSR1_Xtn PF16897.5 gi|240102327|ref|YP_002958635.1| - 0.12 12.4 0.1 0.26 11.3 0.1 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain AAA_23 PF13476.6 gi|240102327|ref|YP_002958635.1| - 0.23 11.9 5.4 0.96 9.9 0.0 3.1 3 0 0 3 3 3 0 AAA domain Peptidase_M22 PF00814.25 gi|240102329|ref|YP_002958637.1| - 6.7e-97 324.4 0.1 7.7e-97 324.2 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|240102329|ref|YP_002958637.1| - 0.00062 19.5 0.0 0.095 12.3 0.0 2.1 2 0 0 2 2 2 2 Carbamoyltransferase N-terminus DUF835 PF05763.12 gi|240102330|ref|YP_002958638.1| - 3.8e-34 117.3 0.0 5.2e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF2157 PF09925.9 gi|240102330|ref|YP_002958638.1| - 0.1 12.4 2.4 0.19 11.5 2.4 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) CTP_transf_like PF01467.26 gi|240102331|ref|YP_002958639.1| - 3.3e-15 56.5 0.0 3.9e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|240102331|ref|YP_002958639.1| - 0.00046 20.1 0.0 0.00071 19.5 0.0 1.3 1 0 0 1 1 1 1 FAD synthetase NIF3 PF01784.18 gi|240102332|ref|YP_002958640.1| - 9.1e-58 195.8 0.0 1.1e-57 195.6 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) His_Phos_1 PF00300.22 gi|240102332|ref|YP_002958640.1| - 0.093 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 1) DUF234 PF03008.14 gi|240102333|ref|YP_002958641.1| - 4.3e-24 84.8 0.2 1.7e-23 82.9 0.0 2.0 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|240102333|ref|YP_002958641.1| - 1.1e-14 54.9 0.4 1.4e-13 51.3 0.4 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|240102333|ref|YP_002958641.1| - 7.2e-10 39.0 0.0 1.7e-09 37.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240102333|ref|YP_002958641.1| - 2.7e-06 27.9 0.2 8.5e-06 26.3 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|240102333|ref|YP_002958641.1| - 6.3e-05 23.3 0.0 0.00032 21.0 0.0 2.2 3 0 0 3 3 3 1 AAA domain UPF0102 PF02021.17 gi|240102333|ref|YP_002958641.1| - 0.029 14.6 0.0 0.065 13.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 HTH_38 PF13936.6 gi|240102333|ref|YP_002958641.1| - 0.064 13.0 0.1 0.21 11.4 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|240102334|ref|YP_002958642.1| - 6.1e-33 114.6 0.3 7.6e-32 111.0 0.0 2.9 3 1 0 3 3 3 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|240102334|ref|YP_002958642.1| - 3.3e-27 94.3 0.2 8.3e-27 93.0 0.2 1.7 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|240102334|ref|YP_002958642.1| - 1.3e-08 35.1 1.0 3e-08 33.9 0.3 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|240102334|ref|YP_002958642.1| - 3.8e-05 23.6 0.2 7.6e-05 22.6 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|240102334|ref|YP_002958642.1| - 0.0085 16.5 0.2 0.018 15.4 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CxxCxxCC PF03692.15 gi|240102336|ref|YP_002958644.1| - 3.4e-18 66.1 0.3 5.2e-18 65.5 0.3 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SapC PF07277.11 gi|240102336|ref|YP_002958644.1| - 0.077 12.6 0.0 0.099 12.2 0.0 1.2 1 0 0 1 1 1 0 SapC DUF3109 PF11307.8 gi|240102336|ref|YP_002958644.1| - 0.091 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3109) UPF0113 PF03657.13 gi|240102337|ref|YP_002958645.1| - 1.3e-15 57.4 0.2 2.1e-15 56.7 0.2 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain UPF0113_N PF17833.1 gi|240102337|ref|YP_002958645.1| - 2.8e-06 27.8 0.0 6.3e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 UPF0113 Pre-PUA domain TruB-C_2 PF09157.11 gi|240102337|ref|YP_002958645.1| - 0.062 13.3 0.0 0.15 12.2 0.0 1.6 2 0 0 2 2 2 0 Pseudouridine synthase II TruB, C-terminal ATPase PF06745.13 gi|240102338|ref|YP_002958646.1| - 2.6e-93 311.6 0.1 2.9e-93 311.5 0.1 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|240102338|ref|YP_002958646.1| - 3.5e-08 32.5 0.0 5e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|240102338|ref|YP_002958646.1| - 3.9e-08 33.1 0.0 7.3e-08 32.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|240102338|ref|YP_002958646.1| - 0.0012 18.2 0.2 0.0038 16.5 0.0 1.8 2 0 0 2 2 2 1 Rad51 DnaB_C PF03796.15 gi|240102338|ref|YP_002958646.1| - 0.0031 16.9 0.0 0.0043 16.4 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain T2SSE PF00437.20 gi|240102338|ref|YP_002958646.1| - 0.0081 15.3 0.0 0.015 14.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_24 PF13479.6 gi|240102338|ref|YP_002958646.1| - 0.011 15.4 0.3 0.075 12.7 0.5 2.1 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|240102338|ref|YP_002958646.1| - 0.032 14.6 0.0 0.079 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|240102338|ref|YP_002958646.1| - 0.18 11.8 0.0 0.36 10.8 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|240102338|ref|YP_002958646.1| - 0.21 12.0 0.5 0.49 10.8 0.5 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PPV_E1_C PF00519.17 gi|240102338|ref|YP_002958646.1| - 0.22 10.3 0.0 0.37 9.6 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase HTH_23 PF13384.6 gi|240102339|ref|YP_002958647.1| - 1.2e-05 25.0 0.5 6.7e-05 22.6 0.1 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 gi|240102339|ref|YP_002958647.1| - 2.4e-05 24.0 0.2 2.4e-05 24.0 0.2 2.5 3 0 0 3 3 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|240102339|ref|YP_002958647.1| - 2.5e-05 23.9 0.1 6.4e-05 22.5 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|240102339|ref|YP_002958647.1| - 5.7e-05 22.6 0.0 0.00017 21.0 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|240102339|ref|YP_002958647.1| - 0.0002 20.8 3.4 0.0055 16.2 0.2 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_40 PF14493.6 gi|240102339|ref|YP_002958647.1| - 0.00022 21.6 5.7 0.0008 19.8 5.7 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|240102339|ref|YP_002958647.1| - 0.00037 20.4 0.0 0.0013 18.6 0.0 1.9 1 0 0 1 1 1 1 HTH domain RepL PF05732.11 gi|240102339|ref|YP_002958647.1| - 0.00038 19.9 1.5 0.00064 19.2 1.5 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) ZapB PF06005.12 gi|240102339|ref|YP_002958647.1| - 0.00045 20.6 12.8 0.00045 20.6 12.8 2.1 1 1 1 2 2 2 1 Cell division protein ZapB GAS PF13851.6 gi|240102339|ref|YP_002958647.1| - 0.00045 19.6 9.0 0.0006 19.2 9.0 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding HTH_20 PF12840.7 gi|240102339|ref|YP_002958647.1| - 0.00047 20.2 0.1 0.0017 18.3 0.0 2.0 1 1 1 2 2 1 1 Helix-turn-helix domain GerE PF00196.19 gi|240102339|ref|YP_002958647.1| - 0.0007 19.1 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_IclR PF09339.10 gi|240102339|ref|YP_002958647.1| - 0.00073 19.3 0.1 0.0015 18.2 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|240102339|ref|YP_002958647.1| - 0.00092 19.0 0.1 0.0039 17.0 0.0 2.1 2 1 1 3 3 2 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|240102339|ref|YP_002958647.1| - 0.001 19.1 0.0 0.0021 18.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix KASH_CCD PF14662.6 gi|240102339|ref|YP_002958647.1| - 0.0011 18.9 10.3 0.0013 18.6 10.3 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH HTH_28 PF13518.6 gi|240102339|ref|YP_002958647.1| - 0.0013 18.8 0.1 0.0026 17.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|240102339|ref|YP_002958647.1| - 0.0016 18.7 1.1 0.0046 17.3 0.4 2.1 2 1 0 2 2 1 1 Helix-turn-helix domain DUF3450 PF11932.8 gi|240102339|ref|YP_002958647.1| - 0.0029 17.0 4.6 0.0029 17.0 4.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3450) MarR_2 PF12802.7 gi|240102339|ref|YP_002958647.1| - 0.0038 17.1 0.3 0.0081 16.0 0.3 1.7 1 1 0 1 1 1 1 MarR family CENP-F_leu_zip PF10473.9 gi|240102339|ref|YP_002958647.1| - 0.0046 17.0 16.3 0.0058 16.7 15.9 1.4 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Phage_GP20 PF06810.11 gi|240102339|ref|YP_002958647.1| - 0.0065 16.3 5.6 0.01 15.6 5.6 1.4 1 0 0 1 1 1 1 Phage minor structural protein GP20 BLOC1_2 PF10046.9 gi|240102339|ref|YP_002958647.1| - 0.0082 16.4 6.2 0.012 15.9 5.1 1.9 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 TnsD PF15978.5 gi|240102339|ref|YP_002958647.1| - 0.0087 15.1 0.1 0.013 14.5 0.1 1.3 1 1 0 1 1 1 1 Tn7-like transposition protein D AAA_13 PF13166.6 gi|240102339|ref|YP_002958647.1| - 0.01 14.5 4.3 0.01 14.6 4.3 1.1 1 0 0 1 1 1 0 AAA domain HTH_17 PF12728.7 gi|240102339|ref|YP_002958647.1| - 0.011 15.9 0.2 0.21 11.8 0.2 2.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|240102339|ref|YP_002958647.1| - 0.012 15.6 0.2 0.04 14.0 0.2 2.0 1 0 0 1 1 1 0 Helix-turn-helix HTH_DeoR PF08220.12 gi|240102339|ref|YP_002958647.1| - 0.013 15.2 0.1 0.03 14.1 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Leu_zip PF15294.6 gi|240102339|ref|YP_002958647.1| - 0.013 15.0 9.2 0.016 14.8 8.6 1.3 1 1 0 1 1 1 0 Leucine zipper DUF3489 PF11994.8 gi|240102339|ref|YP_002958647.1| - 0.014 15.5 0.4 0.029 14.4 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HALZ PF02183.18 gi|240102339|ref|YP_002958647.1| - 0.015 15.5 14.3 0.021 15.0 6.5 2.7 1 1 1 2 2 2 0 Homeobox associated leucine zipper SOAR PF16533.5 gi|240102339|ref|YP_002958647.1| - 0.017 15.1 2.3 0.03 14.3 2.3 1.5 1 0 0 1 1 1 0 STIM1 Orai1-activating region bZIP_1 PF00170.21 gi|240102339|ref|YP_002958647.1| - 0.022 14.9 14.8 0.045 13.8 9.6 2.7 1 1 1 2 2 2 0 bZIP transcription factor TMF_DNA_bd PF12329.8 gi|240102339|ref|YP_002958647.1| - 0.023 14.7 13.0 0.023 14.7 13.0 1.8 2 0 0 2 2 1 0 TATA element modulatory factor 1 DNA binding KorB PF08535.10 gi|240102339|ref|YP_002958647.1| - 0.025 14.6 0.1 0.15 12.1 0.0 2.1 1 1 0 2 2 2 0 KorB domain Terminase_5 PF06056.12 gi|240102339|ref|YP_002958647.1| - 0.039 13.8 0.0 0.08 12.8 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) NPV_P10 PF05531.12 gi|240102339|ref|YP_002958647.1| - 0.04 14.4 2.1 0.046 14.2 0.6 1.9 3 0 0 3 3 1 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.11 gi|240102339|ref|YP_002958647.1| - 0.042 14.2 3.6 0.042 14.2 3.6 2.5 2 2 0 2 2 2 0 Flagella accessory protein C (FlaC) YabA PF06156.13 gi|240102339|ref|YP_002958647.1| - 0.043 14.4 4.5 0.043 14.4 4.5 1.9 2 0 0 2 2 2 0 Initiation control protein YabA Atg14 PF10186.9 gi|240102339|ref|YP_002958647.1| - 0.044 12.9 4.5 0.053 12.6 4.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 TSC22 PF01166.18 gi|240102339|ref|YP_002958647.1| - 0.047 14.0 5.7 0.047 14.0 5.7 2.8 3 0 0 3 3 1 0 TSC-22/dip/bun family HTH_19 PF12844.7 gi|240102339|ref|YP_002958647.1| - 0.062 13.3 0.2 0.062 13.3 0.2 2.7 1 1 2 3 3 3 0 Helix-turn-helix domain DUF2285 PF10074.9 gi|240102339|ref|YP_002958647.1| - 0.066 13.9 0.0 0.11 13.1 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2285) ADIP PF11559.8 gi|240102339|ref|YP_002958647.1| - 0.071 13.2 6.9 0.1 12.7 6.4 1.5 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding Med4 PF10018.9 gi|240102339|ref|YP_002958647.1| - 0.088 12.5 3.2 0.16 11.6 3.2 1.5 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 KfrA_N PF11740.8 gi|240102339|ref|YP_002958647.1| - 0.09 13.5 9.1 0.16 12.6 9.1 1.4 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term Prominin PF05478.11 gi|240102339|ref|YP_002958647.1| - 0.094 10.7 0.8 0.1 10.5 0.8 1.2 1 0 0 1 1 1 0 Prominin FapA PF03961.13 gi|240102339|ref|YP_002958647.1| - 0.1 11.2 9.4 0.12 10.9 9.4 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Laminin_II PF06009.12 gi|240102339|ref|YP_002958647.1| - 0.13 12.3 6.5 0.53 10.3 6.5 1.9 1 1 0 1 1 1 0 Laminin Domain II Seryl_tRNA_N PF02403.22 gi|240102339|ref|YP_002958647.1| - 0.13 12.5 11.5 0.33 11.2 11.3 1.9 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.11 gi|240102339|ref|YP_002958647.1| - 0.17 10.7 12.3 0.21 10.5 12.3 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein GrpE PF01025.19 gi|240102339|ref|YP_002958647.1| - 0.18 11.4 12.3 0.041 13.6 8.9 1.5 2 0 0 2 2 1 0 GrpE BRI3BP PF14965.6 gi|240102339|ref|YP_002958647.1| - 0.21 11.1 0.9 0.38 10.2 0.9 1.5 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Nup54 PF13874.6 gi|240102339|ref|YP_002958647.1| - 0.23 11.6 5.8 0.47 10.6 5.7 1.7 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 TPR_MLP1_2 PF07926.12 gi|240102339|ref|YP_002958647.1| - 0.24 11.5 12.9 0.11 12.5 9.0 1.9 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein DUF1664 PF07889.12 gi|240102339|ref|YP_002958647.1| - 0.3 11.1 4.1 0.31 11.1 2.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF4407 PF14362.6 gi|240102339|ref|YP_002958647.1| - 0.35 10.2 4.9 0.44 9.8 4.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) NYD-SP28_assoc PF14775.6 gi|240102339|ref|YP_002958647.1| - 0.36 11.0 6.8 8 6.7 6.5 2.7 1 1 1 2 2 2 0 Sperm tail C-terminal domain DUF16 PF01519.16 gi|240102339|ref|YP_002958647.1| - 0.37 11.3 9.5 2.6 8.6 9.5 2.0 1 1 0 1 1 1 0 Protein of unknown function DUF16 DMPK_coil PF08826.10 gi|240102339|ref|YP_002958647.1| - 0.37 10.9 14.2 1.2 9.2 11.4 2.4 1 1 1 2 2 2 0 DMPK coiled coil domain like Prefoldin_2 PF01920.20 gi|240102339|ref|YP_002958647.1| - 0.38 10.7 14.2 0.053 13.5 8.7 2.1 2 0 0 2 2 2 0 Prefoldin subunit DUF2730 PF10805.8 gi|240102339|ref|YP_002958647.1| - 0.38 10.9 6.7 0.34 11.0 4.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) JIP_LZII PF16471.5 gi|240102339|ref|YP_002958647.1| - 0.42 10.8 15.5 0.88 9.8 6.7 2.7 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II Swi5 PF07061.11 gi|240102339|ref|YP_002958647.1| - 0.47 10.6 9.1 0.6 10.2 4.1 2.9 2 2 1 3 3 3 0 Swi5 M PF02370.16 gi|240102339|ref|YP_002958647.1| - 0.49 11.1 19.4 0.42 11.3 7.2 3.0 2 1 1 3 3 2 0 M protein repeat Med30 PF11315.8 gi|240102339|ref|YP_002958647.1| - 0.52 10.5 5.5 1.2 9.4 5.5 1.7 1 1 0 1 1 1 0 Mediator complex subunit 30 AAA_23 PF13476.6 gi|240102339|ref|YP_002958647.1| - 0.57 10.7 7.7 0.69 10.4 7.7 1.2 1 0 0 1 1 1 0 AAA domain DivIVA PF05103.13 gi|240102339|ref|YP_002958647.1| - 0.57 10.3 11.3 0.18 11.9 6.9 2.2 2 1 0 2 2 2 0 DivIVA protein DivIC PF04977.15 gi|240102339|ref|YP_002958647.1| - 0.62 9.9 13.3 0.47 10.3 9.2 2.8 2 2 1 3 3 1 0 Septum formation initiator Sigma70_ECF PF07638.11 gi|240102339|ref|YP_002958647.1| - 0.63 9.9 7.8 0.4 10.5 0.2 2.1 1 1 1 2 2 2 0 ECF sigma factor Spc24 PF08286.11 gi|240102339|ref|YP_002958647.1| - 0.67 10.2 4.8 1.6 9.0 4.8 1.6 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 UPF0242 PF06785.11 gi|240102339|ref|YP_002958647.1| - 0.72 9.9 11.1 0.71 9.9 10.4 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus OmpH PF03938.14 gi|240102339|ref|YP_002958647.1| - 1.1 9.6 10.3 0.27 11.6 6.5 1.8 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) APG6_N PF17675.1 gi|240102339|ref|YP_002958647.1| - 1.1 9.8 15.2 1 9.9 14.2 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region Ax_dynein_light PF10211.9 gi|240102339|ref|YP_002958647.1| - 1.2 9.1 13.9 5.6 6.9 13.2 2.2 1 1 0 1 1 1 0 Axonemal dynein light chain TMPIT PF07851.13 gi|240102339|ref|YP_002958647.1| - 1.4 8.1 4.6 1.1 8.4 3.5 1.4 1 1 0 1 1 1 0 TMPIT-like protein KxDL PF10241.9 gi|240102339|ref|YP_002958647.1| - 1.4 9.3 6.4 0.73 10.2 3.9 1.8 2 0 0 2 2 1 0 Uncharacterized conserved protein GreA_GreB_N PF03449.15 gi|240102339|ref|YP_002958647.1| - 1.9 8.7 19.3 0.066 13.4 5.9 3.6 3 1 1 4 4 3 0 Transcription elongation factor, N-terminal DUF4140 PF13600.6 gi|240102339|ref|YP_002958647.1| - 2.1 8.9 6.6 6 7.4 6.5 2.0 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Syntaxin-6_N PF09177.11 gi|240102339|ref|YP_002958647.1| - 2.3 8.8 6.1 9.4 6.9 6.1 2.2 1 1 0 1 1 1 0 Syntaxin 6, N-terminal XhlA PF10779.9 gi|240102339|ref|YP_002958647.1| - 2.3 8.5 11.7 0.84 9.9 6.3 2.6 2 1 0 2 2 2 0 Haemolysin XhlA Macoilin PF09726.9 gi|240102339|ref|YP_002958647.1| - 2.5 6.6 12.3 2.8 6.4 12.3 1.0 1 0 0 1 1 1 0 Macoilin family bZIP_2 PF07716.15 gi|240102339|ref|YP_002958647.1| - 2.5 8.2 15.5 2.3 8.3 11.1 2.7 2 1 1 3 3 2 0 Basic region leucine zipper DUF4337 PF14235.6 gi|240102339|ref|YP_002958647.1| - 3.1 7.9 5.9 4.1 7.5 5.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) PKcGMP_CC PF16808.5 gi|240102339|ref|YP_002958647.1| - 5.4 6.9 16.1 15 5.5 9.1 2.9 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF948 PF06103.11 gi|240102339|ref|YP_002958647.1| - 5.5 7.3 7.1 4.3 7.7 1.1 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) COG2 PF06148.11 gi|240102339|ref|YP_002958647.1| - 7.4 6.7 11.8 4.7 7.3 5.8 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 AdoMet_dc PF02675.15 gi|240102340|ref|YP_002958648.1| - 1.6e-38 131.2 0.0 2e-38 130.9 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SecD_SecF PF02355.16 gi|240102341|ref|YP_002958649.1| - 1.8e-29 102.5 12.6 2.6e-29 101.9 12.6 1.2 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|240102341|ref|YP_002958649.1| - 0.00013 21.1 8.6 0.00018 20.6 8.6 1.2 1 0 0 1 1 1 1 MMPL family Patched PF02460.18 gi|240102341|ref|YP_002958649.1| - 0.0017 16.6 11.0 0.0024 16.0 11.0 1.1 1 0 0 1 1 1 1 Patched family PreAtp-grasp PF18604.1 gi|240102341|ref|YP_002958649.1| - 0.062 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Pre ATP-grasp domain Sec_GG PF07549.14 gi|240102341|ref|YP_002958649.1| - 0.083 12.4 0.1 0.27 10.8 0.1 1.9 1 0 0 1 1 1 0 SecD/SecF GG Motif RexB PF15968.5 gi|240102341|ref|YP_002958649.1| - 0.097 13.1 8.1 0.23 11.9 8.1 1.6 1 1 0 1 1 1 0 Membrane-anchored ion channel, Abi component SecD_SecF PF02355.16 gi|240102342|ref|YP_002958650.1| - 4.9e-17 61.9 11.4 8.8e-17 61.1 11.4 1.3 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|240102342|ref|YP_002958650.1| - 0.00065 18.7 13.9 0.0012 17.9 13.9 1.4 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.14 gi|240102342|ref|YP_002958650.1| - 0.069 12.7 0.3 0.23 11.0 0.0 2.1 2 0 0 2 2 2 0 SecD/SecF GG Motif EFG_II PF14492.6 gi|240102342|ref|YP_002958650.1| - 0.1 12.7 0.3 0.51 10.5 0.0 2.3 3 0 0 3 3 3 0 Elongation Factor G, domain II Reticulon PF02453.17 gi|240102342|ref|YP_002958650.1| - 0.22 11.5 5.7 1.9 8.4 4.8 2.7 3 0 0 3 3 3 0 Reticulon TrkA_N PF02254.18 gi|240102343|ref|YP_002958651.1| - 3.4e-29 101.5 0.2 7.2e-29 100.4 0.1 1.6 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|240102343|ref|YP_002958651.1| - 7.8e-16 57.7 0.1 3.3e-15 55.7 0.0 2.1 2 0 0 2 2 2 1 TrkA-C domain ApbA PF02558.16 gi|240102343|ref|YP_002958651.1| - 1.2e-05 25.0 0.0 2.6e-05 23.9 0.0 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 gi|240102343|ref|YP_002958651.1| - 0.00018 21.4 0.1 0.00026 20.9 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding XdhC_C PF13478.6 gi|240102343|ref|YP_002958651.1| - 0.00038 21.0 0.0 0.00056 20.4 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain Shikimate_DH PF01488.20 gi|240102343|ref|YP_002958651.1| - 0.00048 20.2 0.2 0.0008 19.5 0.2 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NmrA PF05368.13 gi|240102343|ref|YP_002958651.1| - 0.001 18.7 0.1 0.0017 18.0 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|240102343|ref|YP_002958651.1| - 0.0018 18.5 0.1 0.0029 17.9 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 gi|240102343|ref|YP_002958651.1| - 0.0022 17.6 0.0 0.0038 16.8 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|240102343|ref|YP_002958651.1| - 0.0023 18.3 0.0 0.0047 17.3 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|240102343|ref|YP_002958651.1| - 0.0097 16.4 0.0 0.021 15.4 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|240102343|ref|YP_002958651.1| - 0.0098 15.2 0.1 0.014 14.7 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|240102343|ref|YP_002958651.1| - 0.012 15.5 0.4 0.022 14.6 0.1 1.7 2 0 0 2 2 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|240102343|ref|YP_002958651.1| - 0.018 15.6 0.0 0.041 14.5 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|240102343|ref|YP_002958651.1| - 0.019 15.0 0.1 0.046 13.7 0.0 1.7 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|240102343|ref|YP_002958651.1| - 0.029 13.7 0.0 0.044 13.1 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|240102343|ref|YP_002958651.1| - 0.039 13.3 0.1 0.054 12.8 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 gi|240102343|ref|YP_002958651.1| - 0.064 12.7 0.0 0.091 12.2 0.0 1.3 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus NAD_binding_8 PF13450.6 gi|240102343|ref|YP_002958651.1| - 0.069 13.4 0.0 0.2 11.9 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.15 gi|240102343|ref|YP_002958651.1| - 0.072 13.3 0.0 0.42 10.8 0.0 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Trp_halogenase PF04820.14 gi|240102343|ref|YP_002958651.1| - 0.075 11.9 0.0 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|240102343|ref|YP_002958651.1| - 0.076 12.2 0.0 0.086 12.1 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase PglD_N PF17836.1 gi|240102343|ref|YP_002958651.1| - 0.11 13.2 0.0 0.27 11.9 0.0 1.7 1 0 0 1 1 1 0 PglD N-terminal domain DapB_N PF01113.20 gi|240102343|ref|YP_002958651.1| - 0.11 12.6 0.2 0.38 10.9 0.2 1.9 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Glyco_transf_4 PF13439.6 gi|240102343|ref|YP_002958651.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Rossmann-like PF10727.9 gi|240102343|ref|YP_002958651.1| - 0.13 12.1 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain AdoHcyase_NAD PF00670.21 gi|240102343|ref|YP_002958651.1| - 0.15 12.1 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Epimerase PF01370.21 gi|240102343|ref|YP_002958651.1| - 0.16 11.4 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DAO PF01266.24 gi|240102343|ref|YP_002958651.1| - 0.18 11.3 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Succ_CoA_lig PF13607.6 gi|240102344|ref|YP_002958652.1| - 8.6e-58 194.0 0.5 1.5e-56 190.1 0.4 2.3 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|240102344|ref|YP_002958652.1| - 6.6e-17 62.1 0.0 1.2e-15 58.0 0.0 2.4 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|240102344|ref|YP_002958652.1| - 2.4e-06 28.1 2.6 1.7e-05 25.4 0.2 2.7 2 0 0 2 2 2 1 CoA binding domain Hydrolase_6 PF13344.6 gi|240102344|ref|YP_002958652.1| - 0.095 12.8 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF4897 PF16238.5 gi|240102345|ref|YP_002958653.1| - 0.00072 19.4 0.1 0.0018 18.1 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4897) NAD_kinase PF01513.21 gi|240102346|ref|YP_002958654.1| - 3e-68 230.2 0.0 4.4e-68 229.6 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|240102346|ref|YP_002958654.1| - 0.1 12.2 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain LPG_synthase_TM PF03706.13 gi|240102347|ref|YP_002958655.1| - 2.6e-59 201.2 35.5 3.1e-59 201.0 35.5 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Methyltr_RsmB-F PF01189.17 gi|240102348|ref|YP_002958656.1| - 1e-55 188.5 0.0 1.4e-55 188.1 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|240102348|ref|YP_002958656.1| - 4.7e-17 61.7 0.3 9.8e-17 60.7 0.3 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.6 gi|240102348|ref|YP_002958656.1| - 1.1e-10 41.4 0.0 1.7e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|240102348|ref|YP_002958656.1| - 7.3e-09 36.0 0.0 2.1e-07 31.4 0.0 2.4 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_25 PF13649.6 gi|240102348|ref|YP_002958656.1| - 4.2e-06 27.4 0.0 9.8e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|240102348|ref|YP_002958656.1| - 2.3e-05 23.8 0.0 3.9e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|240102348|ref|YP_002958656.1| - 0.00032 20.2 0.0 0.0033 16.9 0.0 2.1 2 0 0 2 2 2 1 Putative methyltransferase HTH_12 PF08461.10 gi|240102348|ref|YP_002958656.1| - 0.0014 18.5 0.4 0.0035 17.2 0.4 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain PCMT PF01135.19 gi|240102348|ref|YP_002958656.1| - 0.0036 17.1 0.0 0.008 15.9 0.0 1.5 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MCD_N PF17408.2 gi|240102348|ref|YP_002958656.1| - 0.0092 16.1 0.1 0.023 14.8 0.1 1.6 1 0 0 1 1 1 1 Malonyl-CoA decarboxylase N-terminal domain FtsJ PF01728.19 gi|240102348|ref|YP_002958656.1| - 0.01 16.0 0.0 0.024 14.7 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase Fibrillarin PF01269.17 gi|240102348|ref|YP_002958656.1| - 0.051 12.7 0.0 0.089 11.9 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Methyltransf_15 PF09445.10 gi|240102348|ref|YP_002958656.1| - 0.074 12.6 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 gi|240102348|ref|YP_002958656.1| - 0.13 12.9 0.0 0.36 11.5 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain DUF3201 PF11447.8 gi|240102349|ref|YP_002958657.1| - 7.1e-70 233.4 1.9 8.1e-70 233.2 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3201) LEA_2 PF03168.13 gi|240102350|ref|YP_002958658.1| - 5.9e-09 36.4 0.1 6.4e-08 33.1 0.1 2.2 2 0 0 2 2 2 1 Late embryogenesis abundant protein ATP-cone PF03477.16 gi|240102350|ref|YP_002958658.1| - 0.02 15.4 0.9 0.038 14.6 0.2 1.8 2 0 0 2 2 2 0 ATP cone domain MukF_M PF17192.4 gi|240102350|ref|YP_002958658.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 MukF middle domain Pyr_redox_2 PF07992.14 gi|240102351|ref|YP_002958659.1| - 1.7e-16 60.3 0.4 8.3e-06 25.2 0.0 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|240102351|ref|YP_002958659.1| - 1.6e-09 37.4 0.0 0.00044 19.4 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.24 gi|240102351|ref|YP_002958659.1| - 3.2e-09 36.8 0.6 6.6e-06 25.9 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|240102351|ref|YP_002958659.1| - 5e-08 32.5 2.3 7.4e-06 25.3 0.2 3.0 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|240102351|ref|YP_002958659.1| - 2e-07 30.1 0.0 1.7e-06 27.0 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|240102351|ref|YP_002958659.1| - 7.4e-07 28.6 0.4 1.8e-06 27.4 0.1 1.7 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|240102351|ref|YP_002958659.1| - 1.4e-06 28.5 0.1 4.5e-05 23.6 0.1 3.4 4 0 0 4 4 4 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|240102351|ref|YP_002958659.1| - 4.9e-05 22.6 0.7 7.2e-05 22.0 0.2 1.4 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|240102351|ref|YP_002958659.1| - 7e-05 22.2 0.5 0.0004 19.7 0.1 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|240102351|ref|YP_002958659.1| - 0.00013 21.4 0.0 0.0016 17.7 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|240102351|ref|YP_002958659.1| - 0.0073 15.7 0.3 0.018 14.4 0.3 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|240102351|ref|YP_002958659.1| - 0.02 14.9 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|240102351|ref|YP_002958659.1| - 0.027 15.0 0.0 4.1 8.0 0.1 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.19 gi|240102351|ref|YP_002958659.1| - 0.14 11.5 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 GMC oxidoreductase DHHC PF01529.20 gi|240102356|ref|YP_002958664.1| - 5 7.2 7.5 0.4 10.8 1.2 2.3 1 1 2 3 3 3 0 DHHC palmitoyltransferase Ac76 PF05814.11 gi|240102357|ref|YP_002958665.1| - 0.085 12.9 3.2 0.13 12.3 0.0 2.5 2 1 0 3 3 3 0 Orf76 (Ac76) CARDB PF07705.11 gi|240102358|ref|YP_002958666.1| - 0.00026 21.2 1.4 0.015 15.6 0.1 4.0 5 1 0 5 5 5 1 CARDB CBS PF00571.28 gi|240102360|ref|YP_002958668.1| - 3.7e-28 97.7 5.0 4.4e-14 52.6 2.4 2.2 2 0 0 2 2 2 2 CBS domain Acetyltransf_10 PF13673.7 gi|240102360|ref|YP_002958668.1| - 0.013 15.5 0.0 6 6.8 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Na_H_Exchanger PF00999.21 gi|240102361|ref|YP_002958669.1| - 8e-64 215.8 46.4 9.3e-64 215.6 46.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TMEM238 PF15125.6 gi|240102361|ref|YP_002958669.1| - 0.025 14.8 7.7 0.025 14.8 7.7 3.7 3 1 1 4 4 4 0 TMEM238 protein family Na_H_Exchanger PF00999.21 gi|240102362|ref|YP_002958670.1| - 1.4e-69 234.8 44.6 1.7e-69 234.5 44.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MarC PF01914.17 gi|240102363|ref|YP_002958671.1| - 6.9e-32 110.5 20.8 8.1e-32 110.3 20.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein HKR_ArcB_TM PF18415.1 gi|240102363|ref|YP_002958671.1| - 4.8 8.0 15.2 0.89 10.4 0.4 3.6 2 2 1 3 3 3 0 Histidine kinase receptor ArcB trans-membrane domain tRNA-synt_His PF13393.6 gi|240102364|ref|YP_002958672.1| - 2.1e-66 224.3 0.0 2.7e-66 224.0 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|240102364|ref|YP_002958672.1| - 5.1e-19 68.2 1.3 1.2e-18 67.1 1.3 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|240102364|ref|YP_002958672.1| - 2.7e-12 47.0 0.0 6.4e-12 45.8 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|240102364|ref|YP_002958672.1| - 2.1e-05 23.7 2.3 0.0053 15.9 1.5 2.5 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) HGTP_anticodon2 PF12745.7 gi|240102364|ref|YP_002958672.1| - 0.0058 16.2 0.0 0.0091 15.5 0.0 1.2 1 0 0 1 1 1 1 Anticodon binding domain of tRNAs E2F_TDP PF02319.20 gi|240102364|ref|YP_002958672.1| - 0.065 13.3 0.0 0.17 12.0 0.0 1.7 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain tRNA-synt_2d PF01409.20 gi|240102364|ref|YP_002958672.1| - 0.11 12.0 0.1 0.42 10.1 0.0 1.9 2 1 0 2 2 2 0 tRNA synthetases class II core domain (F) Aminotran_3 PF00202.21 gi|240102365|ref|YP_002958673.1| - 9.5e-104 347.3 0.0 1.2e-103 346.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|240102365|ref|YP_002958673.1| - 0.13 11.4 0.0 0.98 8.5 0.0 2.0 2 0 0 2 2 2 0 Aminotransferase class I and II DUF745 PF05335.13 gi|240102365|ref|YP_002958673.1| - 0.16 11.7 0.2 0.92 9.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF745) Na_Ala_symp PF01235.17 gi|240102366|ref|YP_002958674.1| - 7.8e-134 446.9 31.6 2.8e-98 329.8 17.6 2.1 2 0 0 2 2 2 2 Sodium:alanine symporter family YabA PF06156.13 gi|240102367|ref|YP_002958675.1| - 4.3e-06 27.3 2.7 5.2e-06 27.0 2.7 1.1 1 0 0 1 1 1 1 Initiation control protein YabA Med9 PF07544.13 gi|240102367|ref|YP_002958675.1| - 0.00011 22.2 4.7 0.00011 22.2 4.7 2.0 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 TolA_bind_tri PF16331.5 gi|240102367|ref|YP_002958675.1| - 0.0013 18.7 5.8 0.0018 18.3 5.8 1.1 1 0 0 1 1 1 1 TolA binding protein trimerisation TMF_DNA_bd PF12329.8 gi|240102367|ref|YP_002958675.1| - 0.0013 18.6 6.9 0.0021 18.0 6.9 1.2 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding HAUS-augmin3 PF14932.6 gi|240102367|ref|YP_002958675.1| - 0.0029 17.3 2.6 0.0033 17.0 2.6 1.0 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 Rbsn PF11464.8 gi|240102367|ref|YP_002958675.1| - 0.0069 16.1 5.2 0.39 10.5 3.4 2.4 2 0 0 2 2 2 1 Rabenosyn Rab binding domain COG6 PF06419.11 gi|240102367|ref|YP_002958675.1| - 0.012 13.8 2.4 0.014 13.6 2.4 1.0 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 CEP63 PF17045.5 gi|240102367|ref|YP_002958675.1| - 0.017 15.0 5.5 0.016 15.1 5.5 1.0 1 0 0 1 1 1 0 Centrosomal protein of 63 kDa KLRAQ PF10205.9 gi|240102367|ref|YP_002958675.1| - 0.019 15.2 1.3 0.022 15.0 1.3 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein TMF_TATA_bd PF12325.8 gi|240102367|ref|YP_002958675.1| - 0.02 15.1 8.1 0.029 14.6 8.1 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF16 PF01519.16 gi|240102367|ref|YP_002958675.1| - 0.022 15.3 2.1 0.028 14.9 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF16 BRE1 PF08647.11 gi|240102367|ref|YP_002958675.1| - 0.025 14.7 5.3 0.032 14.3 5.3 1.1 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase PspA_IM30 PF04012.12 gi|240102367|ref|YP_002958675.1| - 0.029 13.9 3.2 0.036 13.7 3.2 1.1 1 0 0 1 1 1 0 PspA/IM30 family MutS_IV PF05190.18 gi|240102367|ref|YP_002958675.1| - 0.031 14.6 3.4 0.041 14.2 3.4 1.2 1 0 0 1 1 1 0 MutS family domain IV DUF2777 PF10949.8 gi|240102367|ref|YP_002958675.1| - 0.041 13.6 1.2 0.049 13.3 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2777) ATG16 PF08614.11 gi|240102367|ref|YP_002958675.1| - 0.054 13.7 4.7 0.06 13.6 4.7 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) CENP-F_leu_zip PF10473.9 gi|240102367|ref|YP_002958675.1| - 0.062 13.3 8.5 0.077 13.0 8.5 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 zf-C4H2 PF10146.9 gi|240102367|ref|YP_002958675.1| - 0.063 13.6 2.9 0.069 13.4 2.9 1.0 1 0 0 1 1 1 0 Zinc finger-containing protein Atg14 PF10186.9 gi|240102367|ref|YP_002958675.1| - 0.066 12.3 2.8 0.072 12.2 2.8 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Swi5 PF07061.11 gi|240102367|ref|YP_002958675.1| - 0.07 13.2 3.4 0.2 11.7 3.4 1.8 1 1 0 1 1 1 0 Swi5 Synaptonemal_3 PF15191.6 gi|240102367|ref|YP_002958675.1| - 0.071 12.9 0.5 0.097 12.5 0.5 1.2 1 0 0 1 1 1 0 Synaptonemal complex central element protein 3 Ax_dynein_light PF10211.9 gi|240102367|ref|YP_002958675.1| - 0.078 12.9 7.1 0.092 12.7 7.1 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain ERM PF00769.19 gi|240102367|ref|YP_002958675.1| - 0.082 12.7 5.6 0.1 12.4 5.6 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family UPF0242 PF06785.11 gi|240102367|ref|YP_002958675.1| - 0.084 13.0 5.3 0.097 12.8 5.3 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF4988 PF16378.5 gi|240102367|ref|YP_002958675.1| - 0.087 12.5 0.3 0.11 12.2 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function SHE3 PF17078.5 gi|240102367|ref|YP_002958675.1| - 0.098 12.4 5.1 0.17 11.6 4.9 1.4 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 FliJ PF02050.16 gi|240102367|ref|YP_002958675.1| - 0.098 12.9 4.7 0.13 12.5 4.7 1.2 1 0 0 1 1 1 0 Flagellar FliJ protein CENP-H PF05837.12 gi|240102367|ref|YP_002958675.1| - 0.1 13.0 3.0 0.13 12.7 3.0 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Spc24 PF08286.11 gi|240102367|ref|YP_002958675.1| - 0.12 12.6 1.9 0.17 12.1 1.9 1.3 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 COG2 PF06148.11 gi|240102367|ref|YP_002958675.1| - 0.29 11.2 4.0 0.38 10.8 4.0 1.1 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Macoilin PF09726.9 gi|240102367|ref|YP_002958675.1| - 0.35 9.4 5.4 0.4 9.2 5.4 1.1 1 0 0 1 1 1 0 Macoilin family DP PF08781.10 gi|240102367|ref|YP_002958675.1| - 0.36 10.7 4.4 0.48 10.3 4.4 1.2 1 0 0 1 1 1 0 Transcription factor DP bZIP_2 PF07716.15 gi|240102367|ref|YP_002958675.1| - 0.39 10.8 9.2 3.5 7.8 0.2 2.5 1 1 1 2 2 2 0 Basic region leucine zipper DUF3450 PF11932.8 gi|240102367|ref|YP_002958675.1| - 0.42 9.9 4.3 0.52 9.6 4.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) ZapB PF06005.12 gi|240102367|ref|YP_002958675.1| - 0.5 10.9 12.5 0.89 10.0 12.5 1.5 1 1 0 1 1 1 0 Cell division protein ZapB bZIP_1 PF00170.21 gi|240102367|ref|YP_002958675.1| - 0.5 10.5 8.7 1.1 9.5 4.2 2.2 1 1 1 2 2 2 0 bZIP transcription factor DivIC PF04977.15 gi|240102367|ref|YP_002958675.1| - 0.53 10.1 6.7 1 9.1 1.7 2.1 1 1 1 2 2 2 0 Septum formation initiator APG6_N PF17675.1 gi|240102367|ref|YP_002958675.1| - 0.57 10.7 10.4 1.1 9.8 10.4 1.4 1 1 0 1 1 1 0 Apg6 coiled-coil region DUF2312 PF10073.9 gi|240102367|ref|YP_002958675.1| - 0.6 9.8 11.1 0.05 13.3 4.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) Cnn_1N PF07989.11 gi|240102367|ref|YP_002958675.1| - 0.63 10.2 9.5 1.3 9.2 2.4 2.3 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 Fungal_TACC PF12709.7 gi|240102367|ref|YP_002958675.1| - 1 9.8 7.3 0.47 10.9 1.9 2.1 1 1 1 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins FapA PF03961.13 gi|240102367|ref|YP_002958675.1| - 1.6 7.2 6.8 1.8 7.1 6.8 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A CCDC92 PF14916.6 gi|240102367|ref|YP_002958675.1| - 1.7 8.5 7.1 3.1 7.6 0.2 2.6 1 1 2 3 3 3 0 Coiled-coil domain of unknown function Angiomotin_C PF12240.8 gi|240102367|ref|YP_002958675.1| - 4.1 6.9 10.4 5.3 6.5 10.4 1.1 1 0 0 1 1 1 0 Angiomotin C terminal Csm1_N PF18504.1 gi|240102367|ref|YP_002958675.1| - 4.5 7.7 8.9 3.7 8.0 3.0 2.1 1 1 2 3 3 3 0 Csm1 N-terminal domain tRNA-synt_2c PF01411.19 gi|240102368|ref|YP_002958676.1| - 9.6e-163 542.6 0.0 1.3e-162 542.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|240102368|ref|YP_002958676.1| - 4.7e-21 75.6 6.7 1.3e-20 74.2 6.7 1.8 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|240102368|ref|YP_002958676.1| - 3e-17 62.4 0.3 8.8e-17 60.9 0.3 1.9 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Bet_v_1 PF00407.19 gi|240102368|ref|YP_002958676.1| - 0.017 15.0 0.4 0.07 13.0 0.1 2.2 2 0 0 2 2 2 0 Pathogenesis-related protein Bet v I family MmcB-like PF06319.12 gi|240102369|ref|YP_002958677.1| - 0.0029 17.3 0.0 0.0041 16.8 0.0 1.1 1 0 0 1 1 1 1 DNA repair protein MmcB-like MTES_1575 PF18741.1 gi|240102369|ref|YP_002958677.1| - 0.029 14.5 0.0 0.04 14.1 0.0 1.2 1 0 0 1 1 1 0 REase_MTES_1575 NusG_II PF07009.11 gi|240102370|ref|YP_002958678.1| - 0.16 12.1 0.1 3.9 7.7 0.0 2.3 1 1 1 2 2 2 0 NusG domain II TIM PF00121.18 gi|240102371|ref|YP_002958679.1| - 1.7e-11 43.9 0.1 7.5e-11 41.9 0.0 1.8 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|240102371|ref|YP_002958679.1| - 4.6e-06 26.1 0.3 1e-05 25.0 0.1 1.6 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|240102371|ref|YP_002958679.1| - 0.00018 20.6 0.4 0.00029 20.0 0.1 1.5 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|240102371|ref|YP_002958679.1| - 0.00025 20.3 0.1 0.00041 19.6 0.1 1.5 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|240102371|ref|YP_002958679.1| - 0.0053 16.2 0.8 0.0053 16.2 0.8 1.8 2 1 1 3 3 3 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|240102371|ref|YP_002958679.1| - 0.011 15.2 0.1 0.033 13.6 0.1 1.9 2 0 0 2 2 2 0 Histidine biosynthesis protein RNA_pol_inhib PF16857.5 gi|240102371|ref|YP_002958679.1| - 0.028 14.2 0.2 0.23 11.3 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase inhibitor DHO_dh PF01180.21 gi|240102371|ref|YP_002958679.1| - 0.031 13.5 0.1 0.049 12.8 0.1 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase B12-binding PF02310.19 gi|240102371|ref|YP_002958679.1| - 0.045 13.8 0.1 0.11 12.5 0.1 1.7 1 0 0 1 1 1 0 B12 binding domain NanE PF04131.14 gi|240102371|ref|YP_002958679.1| - 0.065 12.4 1.6 0.1 11.8 0.2 1.9 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase TP_methylase PF00590.20 gi|240102372|ref|YP_002958680.1| - 2.1e-20 73.6 0.0 2.8e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1788 PF08747.11 gi|240102372|ref|YP_002958680.1| - 0.005 16.8 0.0 0.0087 16.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) Ndufs5 PF10200.9 gi|240102372|ref|YP_002958680.1| - 0.022 15.0 0.0 1.9 8.8 0.0 2.6 3 0 0 3 3 3 0 NADH:ubiquinone oxidoreductase, NDUFS5-15kDa CoA_trans PF01144.23 gi|240102374|ref|YP_002958683.1| - 2.7e-33 115.2 0.0 3.1e-30 105.2 0.0 2.9 3 2 0 3 3 3 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|240102374|ref|YP_002958683.1| - 9.3e-07 27.5 0.1 1.5e-06 26.9 0.1 1.2 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter Fumerase_C PF05683.12 gi|240102375|ref|YP_002958684.1| - 7.6e-41 139.7 0.0 8.6e-41 139.5 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus FliMN_C PF01052.20 gi|240102375|ref|YP_002958684.1| - 0.027 14.4 0.0 0.09 12.8 0.0 1.8 2 0 0 2 2 2 0 Type III flagellar switch regulator (C-ring) FliN C-term Fumerase PF05681.14 gi|240102376|ref|YP_002958685.1| - 4e-93 311.7 0.0 4.5e-93 311.6 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) 2-Hacid_dh_C PF02826.19 gi|240102377|ref|YP_002958686.1| - 8.6e-73 243.5 0.0 1.5e-72 242.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|240102377|ref|YP_002958686.1| - 4.4e-40 136.5 0.1 5e-40 136.3 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|240102377|ref|YP_002958686.1| - 1.7e-06 28.3 0.0 5.8e-06 26.6 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|240102377|ref|YP_002958686.1| - 8.2e-06 25.5 0.0 2.8e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|240102377|ref|YP_002958686.1| - 0.00036 21.0 0.3 0.03 14.9 0.0 2.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|240102377|ref|YP_002958686.1| - 0.00048 20.9 0.1 0.16 12.8 0.0 2.8 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.21 gi|240102377|ref|YP_002958686.1| - 0.00054 19.3 0.1 0.0013 18.0 0.0 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.21 gi|240102377|ref|YP_002958686.1| - 0.00075 19.6 0.2 0.002 18.2 0.0 1.7 3 0 0 3 3 3 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XdhC_C PF13478.6 gi|240102377|ref|YP_002958686.1| - 0.0057 17.2 0.0 0.023 15.2 0.0 2.0 2 1 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|240102377|ref|YP_002958686.1| - 0.014 15.3 0.0 0.027 14.4 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|240102377|ref|YP_002958686.1| - 0.021 15.1 0.2 0.89 9.8 0.0 2.9 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|240102377|ref|YP_002958686.1| - 0.021 15.3 0.0 0.061 13.8 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|240102377|ref|YP_002958686.1| - 0.061 13.6 1.5 0.76 10.1 0.0 3.0 3 2 1 4 4 3 0 TrkA-N domain NmrA PF05368.13 gi|240102377|ref|YP_002958686.1| - 0.087 12.4 0.0 0.22 11.0 0.0 1.8 1 0 0 1 1 1 0 NmrA-like family PhoU_div PF01865.16 gi|240102378|ref|YP_002958687.1| - 1e-45 155.7 5.3 1.1e-45 155.6 5.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 Sod_Ni PF09055.11 gi|240102378|ref|YP_002958687.1| - 0.0019 18.8 0.8 0.15 12.7 0.0 2.2 2 0 0 2 2 2 1 Nickel-containing superoxide dismutase PhoU PF01895.19 gi|240102378|ref|YP_002958687.1| - 0.0065 16.9 9.8 0.14 12.7 3.1 2.4 2 0 0 2 2 2 2 PhoU domain Carbpep_Y_N PF05388.11 gi|240102378|ref|YP_002958687.1| - 0.0099 16.4 0.7 0.021 15.3 0.2 1.8 2 0 0 2 2 2 1 Carboxypeptidase Y pro-peptide LUC7 PF03194.15 gi|240102378|ref|YP_002958687.1| - 0.01 15.5 1.4 1.9 8.1 1.1 2.1 1 1 1 2 2 2 0 LUC7 N_terminus SesA PF17107.5 gi|240102378|ref|YP_002958687.1| - 0.012 15.8 2.1 0.28 11.4 0.0 2.7 2 1 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Mei4 PF13971.6 gi|240102378|ref|YP_002958687.1| - 0.022 14.3 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 Meiosis-specific protein Mei4 FTCD_C PF04961.12 gi|240102378|ref|YP_002958687.1| - 0.033 14.0 3.4 0.31 10.8 0.6 2.2 1 1 1 2 2 2 0 Formiminotransferase-cyclodeaminase DUF2935 PF11155.8 gi|240102378|ref|YP_002958687.1| - 0.045 14.1 0.0 0.13 12.6 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) GBP_C PF02841.14 gi|240102378|ref|YP_002958687.1| - 0.054 12.9 0.2 0.054 12.9 0.2 1.8 2 0 0 2 2 2 0 Guanylate-binding protein, C-terminal domain Fzo_mitofusin PF04799.13 gi|240102378|ref|YP_002958687.1| - 0.094 12.3 0.8 3.9 7.0 0.0 2.2 2 0 0 2 2 2 0 fzo-like conserved region TPR_MLP1_2 PF07926.12 gi|240102378|ref|YP_002958687.1| - 0.12 12.4 3.9 3.1 7.9 0.5 2.5 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein KIP1 PF07765.12 gi|240102378|ref|YP_002958687.1| - 0.28 11.3 2.9 26 5.0 0.9 3.1 3 0 0 3 3 3 0 KIP1-like protein FlaC_arch PF05377.11 gi|240102378|ref|YP_002958687.1| - 1 9.8 4.3 6.1 7.3 0.2 3.2 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) DivIVA PF05103.13 gi|240102378|ref|YP_002958687.1| - 1.1 9.4 7.1 6.3 6.9 0.5 2.8 3 0 0 3 3 3 0 DivIVA protein YtxH PF12732.7 gi|240102378|ref|YP_002958687.1| - 1.5 9.4 9.4 4e+02 1.6 9.4 3.5 1 1 0 1 1 1 0 YtxH-like protein CLZ PF16526.5 gi|240102378|ref|YP_002958687.1| - 1.9 8.9 6.7 5.4 7.4 0.4 3.0 2 2 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ApbA PF02558.16 gi|240102379|ref|YP_002958688.1| - 2.9e-34 117.9 0.0 5.1e-34 117.1 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.11 gi|240102379|ref|YP_002958688.1| - 1e-31 109.7 0.0 1.9e-31 108.9 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal NAD_Gly3P_dh_N PF01210.23 gi|240102379|ref|YP_002958688.1| - 7.2e-05 22.8 0.0 0.00014 21.9 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|240102379|ref|YP_002958688.1| - 0.0012 18.4 0.2 0.0031 17.1 0.1 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|240102379|ref|YP_002958688.1| - 0.0041 17.0 0.0 0.012 15.6 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|240102379|ref|YP_002958688.1| - 0.02 15.5 0.0 0.035 14.7 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|240102379|ref|YP_002958688.1| - 0.022 15.3 0.5 0.073 13.6 0.5 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|240102379|ref|YP_002958688.1| - 0.023 13.9 0.5 0.077 12.2 0.3 1.9 2 0 0 2 2 2 0 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|240102379|ref|YP_002958688.1| - 0.03 14.6 0.0 0.36 11.1 0.0 2.3 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_2 PF07992.14 gi|240102379|ref|YP_002958688.1| - 0.034 13.4 0.0 0.074 12.3 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|240102379|ref|YP_002958688.1| - 0.079 13.2 0.1 0.17 12.2 0.1 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|240102379|ref|YP_002958688.1| - 0.085 13.1 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain AbiH PF14253.6 gi|240102379|ref|YP_002958688.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH IncD PF17628.2 gi|240102380|ref|YP_002958689.1| - 4.6 7.0 8.2 2.3 8.0 5.1 2.2 1 1 1 2 2 2 0 Inclusion membrane protein D SpoU_methylase PF00588.19 gi|240102381|ref|YP_002958690.1| - 2.1e-34 118.8 0.0 3.1e-34 118.2 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|240102381|ref|YP_002958690.1| - 0.13 12.1 0.0 0.71 9.7 0.0 2.2 2 1 0 2 2 2 0 SAM-dependent RNA methyltransferase DUF1938 PF09153.10 gi|240102382|ref|YP_002958691.1| - 5e-26 90.6 0.0 8e-26 90.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1938) DNA_binding_1 PF01035.20 gi|240102382|ref|YP_002958691.1| - 1.4e-25 89.2 0.0 2e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain TetR_C_7 PF14246.6 gi|240102382|ref|YP_002958691.1| - 0.17 11.9 0.0 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain TPR_2 PF07719.17 gi|240102383|ref|YP_002958692.1| - 7.2e-12 44.5 51.2 0.0015 18.5 2.3 8.1 5 3 3 8 8 8 6 Tetratricopeptide repeat TPR_15 PF13429.6 gi|240102383|ref|YP_002958692.1| - 1.1e-09 37.9 19.3 1.2e-06 28.0 9.9 3.5 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|240102383|ref|YP_002958692.1| - 5.9e-09 36.0 30.8 0.012 16.2 0.6 6.9 6 1 0 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|240102383|ref|YP_002958692.1| - 7.6e-08 32.0 41.5 0.021 15.0 0.6 6.9 5 1 1 7 7 7 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|240102383|ref|YP_002958692.1| - 9.2e-07 28.4 37.6 0.078 12.8 1.0 7.1 5 2 2 7 7 7 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|240102383|ref|YP_002958692.1| - 4.9e-06 26.8 29.1 0.00079 19.7 2.3 5.1 2 2 3 5 5 5 4 Tetratricopeptide repeat SNAP PF14938.6 gi|240102383|ref|YP_002958692.1| - 6.1e-06 25.9 25.5 6.1e-06 25.9 25.5 2.4 1 1 1 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_7 PF13176.6 gi|240102383|ref|YP_002958692.1| - 8.4e-06 25.5 33.7 0.0019 18.1 0.9 7.8 5 2 1 6 6 6 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|240102383|ref|YP_002958692.1| - 1.1e-05 26.0 28.0 0.032 14.9 2.4 5.7 1 1 5 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|240102383|ref|YP_002958692.1| - 6e-05 23.5 21.4 0.22 12.1 5.5 3.7 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|240102383|ref|YP_002958692.1| - 0.00022 21.8 25.9 0.55 11.2 0.6 6.3 1 1 5 6 6 6 3 Tetratricopeptide repeat Clathrin PF00637.20 gi|240102383|ref|YP_002958692.1| - 0.012 15.5 1.6 0.012 15.5 1.6 3.7 1 1 4 5 5 5 0 Region in Clathrin and VPS TPR_9 PF13371.6 gi|240102383|ref|YP_002958692.1| - 0.052 13.7 10.0 12 6.2 0.1 5.3 3 3 2 6 6 6 0 Tetratricopeptide repeat Thioredoxin_15 PF18403.1 gi|240102383|ref|YP_002958692.1| - 2.5 8.0 3.6 3.8 7.4 2.0 2.0 1 1 1 2 2 2 0 Thioredoxin-like domain TPR_5 PF12688.7 gi|240102383|ref|YP_002958692.1| - 4.7 7.5 5.8 58 4.0 0.0 4.3 4 1 1 5 5 5 0 Tetratrico peptide repeat DUF445 PF04286.12 gi|240102383|ref|YP_002958692.1| - 6.3 6.5 6.6 19 4.9 6.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF445) NAC PF01849.18 gi|240102384|ref|YP_002958693.1| - 9.1e-12 44.8 3.4 9.1e-12 44.8 3.4 2.0 1 1 1 2 2 2 1 NAC domain CUE PF02845.16 gi|240102384|ref|YP_002958693.1| - 0.006 16.3 0.1 0.041 13.6 0.0 2.1 1 1 1 2 2 2 1 CUE domain HOIP-UBA PF16678.5 gi|240102384|ref|YP_002958693.1| - 0.033 14.2 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 HOIP UBA domain pair UBA PF00627.31 gi|240102384|ref|YP_002958693.1| - 0.055 13.4 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 UBA/TS-N domain SPT6_acidic PF14632.6 gi|240102384|ref|YP_002958693.1| - 0.088 13.4 0.1 0.14 12.8 0.1 1.3 1 0 0 1 1 1 0 Acidic N-terminal SPT6 DUF4158 PF13700.6 gi|240102384|ref|YP_002958693.1| - 0.13 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4158) UBA_4 PF14555.6 gi|240102384|ref|YP_002958693.1| - 0.16 11.8 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 UBA-like domain HEAT_2 PF13646.6 gi|240102385|ref|YP_002958694.1| - 2.7e-18 66.2 6.0 1.9e-05 24.9 0.0 4.5 2 2 2 4 4 4 4 HEAT repeats Adaptin_N PF01602.20 gi|240102385|ref|YP_002958694.1| - 9.3e-15 54.2 12.7 1.4e-05 23.8 0.1 3.6 2 2 2 4 4 4 3 Adaptin N terminal region HEAT PF02985.22 gi|240102385|ref|YP_002958694.1| - 3.3e-11 42.4 2.7 0.25 11.7 0.0 6.3 6 0 0 6 6 6 3 HEAT repeat Cnd1 PF12717.7 gi|240102385|ref|YP_002958694.1| - 1e-09 38.7 11.7 6.6e-06 26.3 0.8 3.9 3 1 1 4 4 4 3 non-SMC mitotic condensation complex subunit 1 RTP1_C1 PF10363.9 gi|240102385|ref|YP_002958694.1| - 8.5e-08 32.4 3.4 0.012 15.8 1.7 3.8 2 1 0 2 2 2 2 Required for nuclear transport of RNA pol II C-terminus 1 Vac14_Fab1_bd PF12755.7 gi|240102385|ref|YP_002958694.1| - 8.6e-05 23.1 1.1 5.4 7.7 0.1 4.5 3 2 1 4 4 4 2 Vacuolar 14 Fab1-binding region V-ATPase_H_C PF11698.8 gi|240102385|ref|YP_002958694.1| - 0.00038 20.6 9.0 0.079 13.1 0.0 4.3 4 2 0 4 4 4 2 V-ATPase subunit H DCB PF16213.5 gi|240102385|ref|YP_002958694.1| - 0.0025 17.5 0.3 0.0025 17.5 0.3 2.9 3 1 0 3 3 3 1 Dimerisation and cyclophilin-binding domain of Mon2 Arm PF00514.23 gi|240102385|ref|YP_002958694.1| - 0.0032 17.4 0.3 13 6.0 0.1 4.9 5 0 0 5 5 5 0 Armadillo/beta-catenin-like repeat Cnd3 PF12719.7 gi|240102385|ref|YP_002958694.1| - 0.0037 16.5 0.2 0.25 10.5 0.0 2.7 2 1 1 3 3 3 1 Nuclear condensing complex subunits, C-term domain SIL1 PF16782.5 gi|240102385|ref|YP_002958694.1| - 0.0053 16.0 9.0 0.023 13.9 1.4 2.6 2 0 0 2 2 2 2 Nucleotide exchange factor SIL1 MMS19_N PF14500.6 gi|240102385|ref|YP_002958694.1| - 0.0076 15.9 4.8 8 6.0 0.0 4.0 3 2 1 4 4 4 1 Dos2-interacting transcription regulator of RNA-Pol-II TFCD_C PF12612.8 gi|240102385|ref|YP_002958694.1| - 0.0084 16.0 0.9 0.081 12.8 0.1 2.7 3 0 0 3 3 3 1 Tubulin folding cofactor D C terminal HEAT_EZ PF13513.6 gi|240102385|ref|YP_002958694.1| - 0.0095 16.4 2.0 27 5.4 0.1 4.9 3 2 1 5 5 5 0 HEAT-like repeat Nipped-B_C PF12830.7 gi|240102385|ref|YP_002958694.1| - 0.14 12.1 0.3 19 5.1 0.0 3.5 3 1 0 3 3 3 0 Sister chromatid cohesion C-terminus Ipi1_N PF12333.8 gi|240102385|ref|YP_002958694.1| - 0.18 12.4 1.0 28 5.4 0.0 3.3 2 1 1 3 3 3 0 Rix1 complex component involved in 60S ribosome maturation DUF3730 PF12530.8 gi|240102385|ref|YP_002958694.1| - 0.23 11.0 2.3 1.4 8.4 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3730) DHODB_Fe-S_bind PF10418.9 gi|240102386|ref|YP_002958695.1| - 6.2e-11 41.9 2.6 1.4e-10 40.8 2.6 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|240102386|ref|YP_002958695.1| - 8.8e-07 29.5 0.0 4.4e-06 27.3 0.0 2.0 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.12 gi|240102386|ref|YP_002958695.1| - 0.0028 17.8 0.4 0.093 12.8 0.0 2.4 3 0 0 3 3 3 1 Ferric reductase NAD binding domain FAD_binding_6 PF00970.24 gi|240102386|ref|YP_002958695.1| - 0.0066 16.8 0.0 0.045 14.1 0.0 2.0 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain Amidohydro_1 PF01979.20 gi|240102387|ref|YP_002958696.1| - 3.7e-18 65.9 0.0 5.2e-12 45.7 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|240102387|ref|YP_002958696.1| - 1.9e-05 24.4 0.1 0.044 13.3 0.0 2.6 3 0 0 3 3 3 2 Amidohydrolase family TatD_DNase PF01026.21 gi|240102387|ref|YP_002958696.1| - 0.0042 16.5 0.0 1 8.7 0.0 2.2 2 0 0 2 2 2 2 TatD related DNase SBP_bac_5 PF00496.22 gi|240102388|ref|YP_002958697.1| - 8.7e-15 54.5 5.9 1.6e-14 53.7 5.9 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Mucin PF01456.17 gi|240102388|ref|YP_002958697.1| - 6.8 6.7 28.1 11 6.0 28.1 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein BPD_transp_1 PF00528.22 gi|240102389|ref|YP_002958698.1| - 4.8e-37 127.5 14.3 4.8e-37 127.5 14.3 2.4 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component 5_3_exonuc_N PF02739.16 gi|240102389|ref|YP_002958698.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain Bac_GDH PF05088.12 gi|240102389|ref|YP_002958698.1| - 0.2 9.1 0.1 0.26 8.7 0.1 1.0 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase DUF2755 PF10954.8 gi|240102389|ref|YP_002958698.1| - 2.1 8.3 5.1 0.32 10.9 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2755) BPD_transp_1 PF00528.22 gi|240102390|ref|YP_002958699.1| - 7.6e-29 100.8 10.4 7.6e-29 100.8 10.4 2.6 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|240102390|ref|YP_002958699.1| - 3.4e-07 30.1 0.0 3.4e-07 30.1 0.0 3.0 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C YbhQ PF11076.8 gi|240102390|ref|YP_002958699.1| - 0.035 14.1 0.8 0.1 12.6 0.8 1.8 1 0 0 1 1 1 0 Putative inner membrane protein YbhQ ABC_tran PF00005.27 gi|240102391|ref|YP_002958700.1| - 6.2e-28 98.0 0.0 8.7e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|240102391|ref|YP_002958700.1| - 7.8e-21 74.4 0.3 1.3e-20 73.7 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|240102391|ref|YP_002958700.1| - 4.4e-06 26.7 0.5 2.8e-05 24.1 0.1 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|240102391|ref|YP_002958700.1| - 0.0084 16.0 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase ABC_tran PF00005.27 gi|240102392|ref|YP_002958701.1| - 1.7e-30 106.3 0.0 2.2e-30 106.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|240102392|ref|YP_002958701.1| - 4.2e-20 72.0 0.2 7.3e-20 71.3 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|240102392|ref|YP_002958701.1| - 0.00019 20.9 0.0 0.00035 20.1 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|240102392|ref|YP_002958701.1| - 0.00049 20.0 0.2 0.036 13.9 0.0 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|240102392|ref|YP_002958701.1| - 0.0021 18.3 0.1 0.0058 16.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain PRK PF00485.18 gi|240102392|ref|YP_002958701.1| - 0.0044 16.8 0.0 0.0075 16.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|240102392|ref|YP_002958701.1| - 0.017 15.0 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|240102392|ref|YP_002958701.1| - 0.056 13.8 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|240102392|ref|YP_002958701.1| - 0.068 13.7 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|240102392|ref|YP_002958701.1| - 0.069 13.5 0.0 0.11 12.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|240102392|ref|YP_002958701.1| - 0.085 12.6 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|240102392|ref|YP_002958701.1| - 0.096 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|240102392|ref|YP_002958701.1| - 0.12 12.8 0.0 0.31 11.5 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|240102392|ref|YP_002958701.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|240102392|ref|YP_002958701.1| - 0.18 11.2 0.0 0.35 10.2 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|240102392|ref|YP_002958701.1| - 0.18 10.9 0.0 2.7 7.1 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF815) AAA_30 PF13604.6 gi|240102392|ref|YP_002958701.1| - 0.22 11.2 0.1 0.69 9.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain Bombesin PF02044.17 gi|240102392|ref|YP_002958701.1| - 0.29 11.3 0.8 0.54 10.5 0.8 1.5 1 0 0 1 1 1 0 Bombesin-like peptide DUF202 PF02656.15 gi|240102393|ref|YP_002958702.1| - 0.17 12.3 0.8 8.6 6.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) EamA PF00892.20 gi|240102394|ref|YP_002958703.1| - 2.9e-49 166.8 36.9 4.3e-25 88.5 9.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|240102394|ref|YP_002958703.1| - 7.4e-13 48.5 12.8 3.7e-07 29.8 7.6 2.0 1 1 1 2 2 2 2 Triose-phosphate Transporter family UAA PF08449.11 gi|240102394|ref|YP_002958703.1| - 1.5e-05 24.3 17.5 0.0014 17.9 0.6 2.5 2 1 0 2 2 2 2 UAA transporter family EmrE PF13536.6 gi|240102394|ref|YP_002958703.1| - 0.0055 16.3 15.1 0.009 15.6 15.1 1.4 1 0 0 1 1 1 1 Putative multidrug resistance efflux transporter TMEM234 PF10639.9 gi|240102394|ref|YP_002958703.1| - 0.011 15.8 7.0 0.65 10.0 0.6 2.5 2 0 0 2 2 2 0 Putative transmembrane family 234 DUF3938 PF13074.6 gi|240102394|ref|YP_002958703.1| - 0.32 11.3 8.3 1.4 9.2 0.4 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3938) Sec61_beta PF03911.16 gi|240102394|ref|YP_002958703.1| - 0.51 10.4 8.4 5.6 7.1 0.0 4.5 5 0 0 5 5 5 0 Sec61beta family DUF2070 PF09843.9 gi|240102394|ref|YP_002958703.1| - 0.55 8.5 29.7 0.0029 16.0 10.6 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) DUF378 PF04070.12 gi|240102394|ref|YP_002958703.1| - 4.1 7.3 14.4 3.6 7.5 2.7 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF378) Gln-synt_C PF00120.24 gi|240102395|ref|YP_002958704.1| - 3.4e-129 430.8 0.0 4.1e-129 430.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|240102395|ref|YP_002958704.1| - 6.9e-21 73.8 0.0 1.1e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|240102395|ref|YP_002958704.1| - 0.12 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Glutamine synthetase N-terminal domain DUF61 PF01886.16 gi|240102396|ref|YP_002958705.1| - 1e-33 116.1 0.3 1.1e-33 115.9 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 STAR_dimer PF16544.5 gi|240102396|ref|YP_002958705.1| - 0.03 13.9 1.5 7.1 6.3 0.1 2.7 2 1 0 2 2 2 0 Homodimerisation region of STAR domain protein DUF5422 PF17459.2 gi|240102397|ref|YP_002958706.1| - 0.33 11.1 5.9 0.38 10.9 5.9 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5422) RseC_MucC PF04246.12 gi|240102397|ref|YP_002958706.1| - 0.42 10.6 7.0 0.056 13.4 2.3 1.7 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF4981 PF16353.5 gi|240102398|ref|YP_002958707.1| - 0.14 12.7 0.1 32 5.1 0.0 3.2 3 1 0 3 3 3 0 Domain of unknown function(DUF4981) EamA PF00892.20 gi|240102399|ref|YP_002958708.1| - 7.2e-35 120.1 29.6 2.1e-18 66.8 12.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 gi|240102399|ref|YP_002958708.1| - 1.4e-05 24.7 6.2 2e-05 24.3 6.2 1.1 1 0 0 1 1 1 1 Solute carrier family 35 TPT PF03151.16 gi|240102399|ref|YP_002958708.1| - 0.19 11.0 7.6 0.12 11.7 2.8 2.0 1 1 1 2 2 2 0 Triose-phosphate Transporter family Multi_Drug_Res PF00893.19 gi|240102399|ref|YP_002958708.1| - 0.94 10.2 15.0 0.43 11.3 0.5 3.2 3 1 0 3 3 3 0 Small Multidrug Resistance protein DNA_primase_S PF01896.19 gi|240102400|ref|YP_002958709.1| - 1e-15 58.3 0.0 1.9e-15 57.4 0.0 1.5 1 0 0 1 1 1 1 DNA primase small subunit DNA_primase_lrg PF04104.14 gi|240102401|ref|YP_002958710.1| - 6.9e-32 110.9 0.0 2.2e-31 109.3 0.0 1.7 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF3410 PF11890.8 gi|240102401|ref|YP_002958710.1| - 2.2 8.2 4.2 0.44 10.4 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3410) PyrI_C PF02748.15 gi|240102402|ref|YP_002958711.1| - 0.062 13.2 1.3 0.15 12.0 1.3 1.7 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-AN1 PF01428.16 gi|240102402|ref|YP_002958711.1| - 0.064 13.4 0.5 0.095 12.9 0.5 1.2 1 0 0 1 1 1 0 AN1-like Zinc finger Acylphosphatase PF00708.18 gi|240102403|ref|YP_002958712.1| - 6.3e-29 100.2 0.0 7e-29 100.1 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase CutA1 PF03091.15 gi|240102404|ref|YP_002958713.1| - 3.7e-30 103.7 0.1 4e-30 103.6 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF99 PF01949.16 gi|240102405|ref|YP_002958714.1| - 7.5e-65 217.8 0.0 8.5e-65 217.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Usp PF00582.26 gi|240102406|ref|YP_002958715.1| - 6.5e-37 127.2 0.1 1.1e-18 68.1 0.0 2.7 2 1 0 2 2 2 2 Universal stress protein family CW_binding_2 PF04122.12 gi|240102406|ref|YP_002958715.1| - 0.01 16.5 0.1 1.8 9.3 0.1 2.5 2 1 0 2 2 2 0 Putative cell wall binding repeat 2 PEP-utilizers_C PF02896.18 gi|240102406|ref|YP_002958715.1| - 0.069 12.2 0.2 0.1 11.7 0.2 1.2 1 0 0 1 1 1 0 PEP-utilising enzyme, TIM barrel domain GCV_T PF01571.21 gi|240102407|ref|YP_002958716.1| - 2.8e-97 325.1 0.0 3.4e-97 324.8 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|240102407|ref|YP_002958716.1| - 5.4e-23 80.7 0.1 1e-22 79.8 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain EamA PF00892.20 gi|240102408|ref|YP_002958717.1| - 1.3e-32 112.8 31.9 1.7e-17 63.8 11.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|240102408|ref|YP_002958717.1| - 0.094 12.0 5.2 0.65 9.3 5.2 2.3 1 1 0 1 1 1 0 Triose-phosphate Transporter family DUF4405 PF14358.6 gi|240102409|ref|YP_002958718.1| - 8.1e-05 23.1 6.1 0.00015 22.3 6.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4405) Ost4 PF10215.9 gi|240102409|ref|YP_002958718.1| - 0.39 10.6 7.1 1 9.2 0.0 2.2 2 0 0 2 2 2 0 Oligosaccaryltransferase QueC PF06508.13 gi|240102410|ref|YP_002958719.1| - 2.8e-63 213.2 0.0 3.5e-63 212.9 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|240102410|ref|YP_002958719.1| - 1.8e-06 27.9 0.0 7.2e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 PP-loop family Diphthami_syn_2 PF01902.17 gi|240102410|ref|YP_002958719.1| - 0.00027 20.5 0.0 0.00046 19.8 0.0 1.4 1 0 0 1 1 1 1 Diphthamide synthase Arginosuc_synth PF00764.19 gi|240102410|ref|YP_002958719.1| - 0.00042 19.7 0.0 0.00068 19.0 0.0 1.3 1 0 0 1 1 1 1 Arginosuccinate synthase ThiI PF02568.14 gi|240102410|ref|YP_002958719.1| - 0.0012 18.4 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|240102410|ref|YP_002958719.1| - 0.0066 16.5 0.0 0.16 12.0 0.0 2.1 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.21 gi|240102410|ref|YP_002958719.1| - 0.015 15.0 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase NAD_synthase PF02540.17 gi|240102410|ref|YP_002958719.1| - 0.043 12.9 0.0 0.86 8.7 0.0 2.1 2 0 0 2 2 2 0 NAD synthase tRNA_Me_trans PF03054.16 gi|240102410|ref|YP_002958719.1| - 0.1 11.4 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase DUF4023 PF13215.6 gi|240102410|ref|YP_002958719.1| - 0.14 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4023) PIN PF01850.21 gi|240102411|ref|YP_002958720.1| - 4e-16 59.6 0.2 4.6e-16 59.4 0.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|240102411|ref|YP_002958720.1| - 2.6e-05 24.5 0.1 8.7e-05 22.8 0.1 1.7 1 1 0 1 1 1 1 PIN like domain Nudc_N PF14050.6 gi|240102411|ref|YP_002958720.1| - 0.042 13.8 0.0 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 N-terminal conserved domain of Nudc. MazE_antitoxin PF04014.18 gi|240102412|ref|YP_002958721.1| - 3.8e-13 49.0 0.2 5.2e-13 48.6 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|240102412|ref|YP_002958721.1| - 5.8e-06 26.7 0.1 6.5e-06 26.5 0.1 1.3 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF1905 PF08922.11 gi|240102412|ref|YP_002958721.1| - 0.034 14.2 0.0 0.053 13.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) DHO_dh PF01180.21 gi|240102413|ref|YP_002958722.1| - 6.5e-65 219.3 0.0 7.5e-65 219.0 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|240102413|ref|YP_002958722.1| - 2.9e-13 49.6 0.0 7.3e-13 48.3 0.0 1.5 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|240102413|ref|YP_002958722.1| - 3.3e-05 23.4 4.5 7e-05 22.4 1.0 2.1 1 1 0 2 2 2 1 Nitronate monooxygenase DUF561 PF04481.12 gi|240102413|ref|YP_002958722.1| - 0.0023 17.1 0.1 0.0099 15.1 0.1 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|240102413|ref|YP_002958722.1| - 0.0056 16.2 0.1 0.017 14.6 0.0 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|240102413|ref|YP_002958722.1| - 0.01 14.9 0.5 0.016 14.2 0.1 1.5 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Pyr_redox_2 PF07992.14 gi|240102414|ref|YP_002958723.1| - 1.5e-38 132.7 5.4 2.2e-38 132.2 5.4 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|240102414|ref|YP_002958723.1| - 6.4e-29 99.8 0.0 1.4e-28 98.8 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_3 PF13738.6 gi|240102414|ref|YP_002958723.1| - 3.9e-16 59.2 0.2 1.3e-13 50.8 0.2 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|240102414|ref|YP_002958723.1| - 7.5e-14 51.9 11.5 9.1e-14 51.6 0.7 3.1 2 2 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|240102414|ref|YP_002958723.1| - 5.7e-13 48.7 11.8 2e-08 33.8 1.2 3.4 2 1 1 3 3 3 3 FAD binding domain NAD_binding_8 PF13450.6 gi|240102414|ref|YP_002958723.1| - 6e-12 45.6 4.2 8.4e-08 32.3 0.3 2.9 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|240102414|ref|YP_002958723.1| - 6e-12 45.9 6.4 0.00012 22.5 0.7 3.8 3 1 1 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|240102414|ref|YP_002958723.1| - 1.1e-11 44.2 10.0 3.6e-10 39.1 0.7 3.2 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.24 gi|240102414|ref|YP_002958723.1| - 1.6e-10 41.2 11.7 5.4e-06 26.2 0.2 3.4 3 1 0 3 3 3 3 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|240102414|ref|YP_002958723.1| - 3.8e-09 36.2 6.8 4.1e-05 23.0 0.2 2.9 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.22 gi|240102414|ref|YP_002958723.1| - 1.3e-08 34.4 15.6 8.8e-07 28.3 1.1 4.0 3 1 1 4 4 4 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|240102414|ref|YP_002958723.1| - 1.3e-07 31.1 1.6 8.8e-05 21.9 0.0 2.4 2 0 0 2 2 2 2 Thi4 family NAD_binding_7 PF13241.6 gi|240102414|ref|YP_002958723.1| - 1.5e-06 28.6 1.8 0.064 13.7 0.2 3.0 2 1 1 3 3 3 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|240102414|ref|YP_002958723.1| - 2.4e-06 27.0 0.2 2.4e-06 27.0 0.2 2.9 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|240102414|ref|YP_002958723.1| - 0.00019 20.6 7.3 0.00032 19.9 0.7 2.8 2 1 0 3 3 3 1 Lycopene cyclase protein ApbA PF02558.16 gi|240102414|ref|YP_002958723.1| - 0.00035 20.2 7.6 0.0066 16.1 0.9 3.7 3 1 1 4 4 4 1 Ketopantoate reductase PanE/ApbA Amino_oxidase PF01593.24 gi|240102414|ref|YP_002958723.1| - 0.00082 18.8 0.2 0.27 10.5 0.0 2.6 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase K_oxygenase PF13434.6 gi|240102414|ref|YP_002958723.1| - 0.0078 15.4 0.1 0.66 9.0 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.14 gi|240102414|ref|YP_002958723.1| - 0.008 15.8 2.7 0.79 9.3 0.1 2.4 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|240102414|ref|YP_002958723.1| - 0.013 14.4 0.4 0.013 14.4 0.4 1.9 2 0 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.18 gi|240102414|ref|YP_002958723.1| - 0.021 14.7 4.5 0.59 10.0 0.2 2.8 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|240102414|ref|YP_002958723.1| - 0.022 15.0 1.2 1.4 9.2 0.0 2.9 2 0 0 2 2 2 0 TrkA-N domain Fer2_3 PF13085.6 gi|240102414|ref|YP_002958723.1| - 0.081 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain NAD_binding_9 PF13454.6 gi|240102414|ref|YP_002958723.1| - 0.17 11.9 0.2 0.17 11.9 0.2 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding F420_oxidored PF03807.17 gi|240102414|ref|YP_002958723.1| - 0.25 12.0 4.1 0.9 10.2 0.3 3.2 4 0 0 4 4 3 0 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.19 gi|240102414|ref|YP_002958723.1| - 0.33 11.7 2.0 7.7 7.3 0.2 2.6 2 0 0 2 2 2 0 CoA binding domain Fer4 PF00037.27 gi|240102415|ref|YP_002958724.1| - 1.5e-07 30.9 2.4 1.5e-07 30.9 2.4 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|240102415|ref|YP_002958724.1| - 7.9e-06 25.7 13.7 1.6e-05 24.8 1.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102415|ref|YP_002958724.1| - 1.5e-05 25.5 8.4 6e-05 23.6 8.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240102415|ref|YP_002958724.1| - 1.8e-05 24.8 8.0 5.1e-05 23.4 8.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102415|ref|YP_002958724.1| - 2.2e-05 24.5 23.5 0.00063 19.8 1.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102415|ref|YP_002958724.1| - 5.7e-05 23.0 2.4 5.7e-05 23.0 2.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240102415|ref|YP_002958724.1| - 0.00012 22.1 12.9 0.00054 20.0 12.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|240102415|ref|YP_002958724.1| - 0.00015 22.5 14.3 0.0037 18.1 4.1 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|240102415|ref|YP_002958724.1| - 0.00066 20.6 10.5 0.072 14.0 1.1 2.3 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|240102415|ref|YP_002958724.1| - 0.0011 19.5 0.4 0.0011 19.5 0.4 2.6 2 1 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|240102415|ref|YP_002958724.1| - 0.0025 18.2 3.5 0.011 16.1 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|240102415|ref|YP_002958724.1| - 0.0026 18.4 1.3 0.0026 18.4 1.3 2.6 3 1 0 3 3 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|240102415|ref|YP_002958724.1| - 0.0035 17.7 0.6 0.0035 17.7 0.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240102415|ref|YP_002958724.1| - 2.7 8.6 11.8 0.54 10.8 2.2 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain SO_alpha_A3 PF17806.1 gi|240102416|ref|YP_002958725.1| - 5.6e-16 58.6 0.0 6.7e-16 58.4 0.0 1.0 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Fer2_BFD PF04324.15 gi|240102416|ref|YP_002958725.1| - 1.9e-14 53.7 2.2 2.4e-14 53.4 2.2 1.1 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain DAO PF01266.24 gi|240102417|ref|YP_002958726.1| - 1.5e-61 209.0 0.0 1.7e-61 208.8 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase AA_kinase PF00696.28 gi|240102418|ref|YP_002958727.1| - 7.4e-34 117.4 0.4 2.2e-33 115.8 0.4 1.6 1 1 0 1 1 1 1 Amino acid kinase family RHH_1 PF01402.21 gi|240102419|ref|YP_002958728.1| - 2.4e-09 36.8 3.3 2e-08 33.9 0.0 2.5 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|240102419|ref|YP_002958728.1| - 1.7e-05 25.0 0.0 1.7e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family HicB_lk_antitox PF15919.5 gi|240102419|ref|YP_002958728.1| - 0.0048 17.0 0.0 0.023 14.8 0.0 1.8 2 0 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system PRESAN PF09687.10 gi|240102419|ref|YP_002958728.1| - 0.0091 16.5 0.4 0.017 15.7 0.3 1.5 2 0 0 2 2 2 1 Plasmodium RESA N-terminal CopG_antitoxin PF12441.8 gi|240102419|ref|YP_002958728.1| - 0.03 14.9 0.1 11 6.6 0.0 2.1 1 1 1 2 2 2 0 CopG antitoxin of type II toxin-antitoxin system GatB_Yqey PF02637.18 gi|240102419|ref|YP_002958728.1| - 0.067 13.1 0.0 0.074 12.9 0.0 1.1 1 0 0 1 1 1 0 GatB domain DUF5345 PF17280.2 gi|240102419|ref|YP_002958728.1| - 0.1 12.6 1.0 7.1 6.7 0.2 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5345) PIN_3 PF13470.6 gi|240102420|ref|YP_002958729.1| - 1.3e-14 55.0 0.0 1.6e-14 54.7 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 gi|240102420|ref|YP_002958729.1| - 0.076 13.5 0.2 0.13 12.8 0.2 1.6 1 1 0 1 1 1 0 PIN domain Pyr_redox_2 PF07992.14 gi|240102421|ref|YP_002958730.1| - 9e-69 231.9 3.5 1.4e-68 231.3 3.5 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|240102421|ref|YP_002958730.1| - 5.3e-24 84.6 7.2 6.8e-18 65.0 0.9 4.1 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|240102421|ref|YP_002958730.1| - 1.9e-18 66.7 0.3 1.8e-17 63.6 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 gi|240102421|ref|YP_002958730.1| - 2.6e-06 27.3 6.5 0.14 11.7 0.1 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|240102421|ref|YP_002958730.1| - 6.9e-06 25.5 3.6 9e-05 21.9 1.9 3.1 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|240102421|ref|YP_002958730.1| - 1.1e-05 24.4 5.3 0.43 9.2 1.0 4.0 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.6 gi|240102421|ref|YP_002958730.1| - 3.2e-05 24.1 0.3 0.18 12.0 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|240102421|ref|YP_002958730.1| - 5.8e-05 22.3 0.4 0.019 14.1 0.1 2.6 3 0 0 3 3 3 2 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|240102421|ref|YP_002958730.1| - 0.0003 20.2 0.7 0.028 13.7 0.1 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|240102421|ref|YP_002958730.1| - 0.00037 20.4 2.1 0.0043 17.0 0.2 2.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|240102421|ref|YP_002958730.1| - 0.00058 19.0 4.2 0.26 10.3 0.0 3.1 2 1 1 3 3 3 2 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|240102421|ref|YP_002958730.1| - 0.00073 19.9 0.8 0.047 14.1 0.1 2.7 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_2 PF00890.24 gi|240102421|ref|YP_002958730.1| - 0.0008 18.6 6.1 0.3 10.1 1.3 3.3 3 0 0 3 3 3 2 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|240102421|ref|YP_002958730.1| - 0.0029 17.2 0.3 0.034 13.7 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|240102421|ref|YP_002958730.1| - 0.019 14.2 1.2 0.12 11.6 0.4 2.2 2 0 0 2 2 2 0 FAD binding domain K_oxygenase PF13434.6 gi|240102421|ref|YP_002958730.1| - 0.026 13.7 0.0 0.22 10.7 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.19 gi|240102421|ref|YP_002958730.1| - 0.05 12.9 0.4 0.18 11.1 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|240102421|ref|YP_002958730.1| - 0.058 12.7 0.3 0.54 9.6 0.0 2.1 2 0 0 2 2 2 0 ThiF family GFO_IDH_MocA PF01408.22 gi|240102421|ref|YP_002958730.1| - 0.063 14.1 0.2 3.1 8.6 0.0 2.5 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Glu_dehyd_C PF16912.5 gi|240102421|ref|YP_002958730.1| - 0.074 12.5 1.1 0.18 11.3 0.2 2.2 2 1 1 3 3 3 0 Glucose dehydrogenase C-terminus TrkA_N PF02254.18 gi|240102421|ref|YP_002958730.1| - 0.11 12.8 1.6 8.4 6.7 0.1 3.0 3 0 0 3 3 3 0 TrkA-N domain Trp_halogenase PF04820.14 gi|240102421|ref|YP_002958730.1| - 0.63 8.8 0.0 0.63 8.8 0.0 2.0 3 0 0 3 3 3 0 Tryptophan halogenase Exo_endo_phos PF03372.23 gi|240102422|ref|YP_002958731.1| - 1e-05 25.2 0.0 1.7e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family PTS_2-RNA PF01885.16 gi|240102423|ref|YP_002958732.1| - 2e-33 116.0 0.0 2.3e-33 115.8 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 gi|240102423|ref|YP_002958732.1| - 0.0028 17.3 0.0 0.0038 16.8 0.0 1.2 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase catalytic domain MFS_1 PF07690.16 gi|240102424|ref|YP_002958733.1| - 2.8e-43 148.2 61.5 3e-24 85.6 32.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|240102424|ref|YP_002958733.1| - 3.1e-23 82.3 33.3 1.2e-22 80.3 33.3 1.7 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|240102424|ref|YP_002958733.1| - 3.9e-07 29.3 46.0 0.00035 19.6 15.9 3.9 2 2 2 4 4 4 4 Sugar (and other) transporter MFS_3 PF05977.13 gi|240102424|ref|YP_002958733.1| - 4.4e-05 22.1 26.1 5.4e-05 21.8 26.1 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Peptidase_S8 PF00082.22 gi|240102425|ref|YP_002958734.1| - 7.1e-67 225.8 11.4 1.2e-66 225.0 11.4 1.4 1 0 0 1 1 1 1 Subtilase family Tk-SP_N-pro PF18237.1 gi|240102425|ref|YP_002958734.1| - 1.3e-33 114.8 0.6 2.4e-33 114.0 0.6 1.4 1 0 0 1 1 1 1 Tk-SP N-propeptide domain PPC PF04151.15 gi|240102425|ref|YP_002958734.1| - 5.3e-11 43.5 13.6 5.2e-08 33.9 2.6 3.8 4 1 0 4 4 4 2 Bacterial pre-peptidase C-terminal domain DUF5643 PF18705.1 gi|240102425|ref|YP_002958734.1| - 0.26 11.3 1.8 8.9 6.3 0.2 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5643) SQHop_cyclase_N PF13249.6 gi|240102426|ref|YP_002958735.1| - 0.0032 16.6 0.0 1.7 7.7 0.0 3.0 3 0 0 3 3 3 2 Squalene-hopene cyclase N-terminal domain SQHop_cyclase_C PF13243.6 gi|240102426|ref|YP_002958735.1| - 0.0065 15.6 0.9 1.9 7.5 0.1 3.0 2 1 0 2 2 2 2 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|240102426|ref|YP_002958735.1| - 0.0086 15.8 0.1 0.59 9.9 0.0 3.4 3 0 0 3 3 3 1 Prenyltransferase and squalene oxidase repeat NTP_transf_2 PF01909.23 gi|240102427|ref|YP_002958736.1| - 4.5e-08 33.3 0.2 1.6e-07 31.5 0.2 1.9 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|240102427|ref|YP_002958736.1| - 0.001 19.1 0.0 0.0022 18.0 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF43 PF01861.16 gi|240102428|ref|YP_002958737.1| - 1.8e-121 403.9 0.1 2.3e-121 403.6 0.1 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain DUF1217 PF06748.12 gi|240102428|ref|YP_002958737.1| - 0.0084 16.2 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1217) N6-adenineMlase PF10237.9 gi|240102428|ref|YP_002958737.1| - 0.01 15.7 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase AAA_assoc_C PF09821.9 gi|240102428|ref|YP_002958737.1| - 0.021 15.4 0.0 0.052 14.1 0.0 1.6 1 0 0 1 1 1 0 C-terminal AAA-associated domain BCL9 PF11502.8 gi|240102428|ref|YP_002958737.1| - 0.18 11.6 0.2 0.33 10.8 0.2 1.4 1 0 0 1 1 1 0 B-cell lymphoma 9 protein CoA_binding_2 PF13380.6 gi|240102429|ref|YP_002958738.1| - 0.013 16.0 0.0 0.022 15.2 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain FeS_assembly_P PF01883.19 gi|240102430|ref|YP_002958739.1| - 1e-25 89.7 1.4 7.3e-22 77.3 0.1 2.3 2 0 0 2 2 2 2 Iron-sulfur cluster assembly protein HMA PF00403.26 gi|240102430|ref|YP_002958739.1| - 0.084 13.3 12.7 3 8.4 0.0 4.0 3 1 1 4 4 4 0 Heavy-metal-associated domain NifU PF01106.17 gi|240102430|ref|YP_002958739.1| - 0.17 12.1 1.5 1 9.6 0.0 2.9 2 2 1 3 3 3 0 NifU-like domain Ribosomal_S25 PF03297.15 gi|240102430|ref|YP_002958739.1| - 0.22 11.7 3.1 0.25 11.6 0.3 2.2 2 1 0 2 2 2 0 S25 ribosomal protein Fer4_13 PF13370.6 gi|240102431|ref|YP_002958740.1| - 2.7e-16 59.8 4.6 3.5e-16 59.5 4.6 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|240102431|ref|YP_002958740.1| - 2.1e-14 54.0 8.6 3.8e-14 53.2 8.6 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.11 gi|240102431|ref|YP_002958740.1| - 6.7e-07 29.3 0.8 8.4e-07 29.0 0.8 1.1 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4 PF00037.27 gi|240102431|ref|YP_002958740.1| - 9.6e-06 25.2 7.0 0.0067 16.2 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102431|ref|YP_002958740.1| - 0.015 15.9 3.0 0.87 10.2 0.4 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|240102431|ref|YP_002958740.1| - 0.018 15.1 5.1 0.14 12.3 5.3 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102431|ref|YP_002958740.1| - 0.024 14.7 3.6 0.083 13.0 3.6 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|240102431|ref|YP_002958740.1| - 0.069 13.3 7.6 0.13 12.4 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Laminin_G_3 PF13385.6 gi|240102432|ref|YP_002958741.1| - 7.6e-08 32.6 6.5 0.0011 19.2 0.2 2.8 3 0 0 3 3 3 2 Concanavalin A-like lectin/glucanases superfamily DUF1080 PF06439.11 gi|240102432|ref|YP_002958741.1| - 1.8e-06 28.2 1.5 0.0061 16.7 0.2 2.6 2 0 0 2 2 2 2 Domain of Unknown Function (DUF1080) AAA_29 PF13555.6 gi|240102433|ref|YP_002958742.1| - 0.04 13.7 0.0 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain Laminin_II PF06009.12 gi|240102434|ref|YP_002958743.1| - 4e-08 33.4 20.9 6.2e-06 26.3 8.8 2.1 1 1 1 2 2 2 2 Laminin Domain II EzrA PF06160.12 gi|240102434|ref|YP_002958743.1| - 6.8e-08 31.1 16.4 9.1e-08 30.7 16.4 1.0 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA BLOC1_2 PF10046.9 gi|240102434|ref|YP_002958743.1| - 2.5e-07 30.9 19.7 0.00022 21.5 6.5 2.6 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Med9 PF07544.13 gi|240102434|ref|YP_002958743.1| - 2.8e-07 30.5 19.9 0.00077 19.5 6.9 3.1 1 1 2 3 3 3 2 RNA polymerase II transcription mediator complex subunit 9 LPP PF04728.13 gi|240102434|ref|YP_002958743.1| - 2.4e-06 27.8 12.9 0.064 13.6 0.4 3.4 3 0 0 3 3 3 2 Lipoprotein leucine-zipper DUF1664 PF07889.12 gi|240102434|ref|YP_002958743.1| - 7.8e-06 25.9 21.1 0.01 15.8 12.3 2.9 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 gi|240102434|ref|YP_002958743.1| - 8.5e-06 26.1 31.8 0.012 16.0 6.3 3.8 2 1 1 3 3 3 2 Flagella accessory protein C (FlaC) Prominin PF05478.11 gi|240102434|ref|YP_002958743.1| - 2.3e-05 22.6 10.3 3.1e-05 22.2 10.3 1.1 1 0 0 1 1 1 1 Prominin TolA_bind_tri PF16331.5 gi|240102434|ref|YP_002958743.1| - 3.4e-05 23.9 20.4 0.014 15.4 1.2 3.1 3 0 0 3 3 3 2 TolA binding protein trimerisation Tropomyosin_1 PF12718.7 gi|240102434|ref|YP_002958743.1| - 3.8e-05 23.9 30.0 0.0033 17.6 18.4 2.1 1 1 1 2 2 2 2 Tropomyosin like Spc7 PF08317.11 gi|240102434|ref|YP_002958743.1| - 4.8e-05 22.4 27.8 0.00019 20.4 25.7 1.9 1 1 0 1 1 1 1 Spc7 kinetochore protein DUF948 PF06103.11 gi|240102434|ref|YP_002958743.1| - 6.5e-05 23.1 17.1 0.057 13.7 2.8 3.3 1 1 2 3 3 3 2 Bacterial protein of unknown function (DUF948) HSBP1 PF06825.12 gi|240102434|ref|YP_002958743.1| - 8.1e-05 22.4 8.2 0.26 11.1 0.6 3.9 3 1 1 4 4 3 2 Heat shock factor binding protein 1 FliJ PF02050.16 gi|240102434|ref|YP_002958743.1| - 8.8e-05 22.7 16.5 0.0031 17.7 10.6 2.1 1 1 1 2 2 2 2 Flagellar FliJ protein Atg14 PF10186.9 gi|240102434|ref|YP_002958743.1| - 9.2e-05 21.7 9.8 9.2e-05 21.7 9.8 2.1 1 1 1 2 2 2 1 Vacuolar sorting 38 and autophagy-related subunit 14 XhlA PF10779.9 gi|240102434|ref|YP_002958743.1| - 9.5e-05 22.5 29.5 0.035 14.3 8.8 3.4 1 1 2 3 3 3 2 Haemolysin XhlA AAA_13 PF13166.6 gi|240102434|ref|YP_002958743.1| - 9.8e-05 21.2 17.9 0.00015 20.6 17.9 1.2 1 0 0 1 1 1 1 AAA domain GAS PF13851.6 gi|240102434|ref|YP_002958743.1| - 0.0001 21.8 27.0 0.0016 17.8 16.6 2.1 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding DUF2730 PF10805.8 gi|240102434|ref|YP_002958743.1| - 0.00017 21.6 16.7 0.02 15.0 5.6 2.9 1 1 1 2 2 2 2 Protein of unknown function (DUF2730) DHR10 PF18595.1 gi|240102434|ref|YP_002958743.1| - 0.00021 21.3 29.5 0.028 14.5 12.8 2.2 1 1 1 2 2 2 2 Designed helical repeat protein 10 domain NPV_P10 PF05531.12 gi|240102434|ref|YP_002958743.1| - 0.00021 21.7 16.4 0.57 10.7 1.8 3.3 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein Golgin_A5 PF09787.9 gi|240102434|ref|YP_002958743.1| - 0.00031 20.3 23.4 0.00043 19.9 23.4 1.2 1 0 0 1 1 1 1 Golgin subfamily A member 5 Allexi_40kDa PF05549.11 gi|240102434|ref|YP_002958743.1| - 0.00033 20.3 16.8 0.024 14.2 7.3 2.0 1 1 1 2 2 2 2 Allexivirus 40kDa protein Exonuc_VII_L PF02601.15 gi|240102434|ref|YP_002958743.1| - 0.0008 19.1 12.5 0.001 18.7 12.5 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit HOOK PF05622.12 gi|240102434|ref|YP_002958743.1| - 0.001 17.4 22.3 0.0012 17.1 22.3 1.1 1 0 0 1 1 1 1 HOOK protein T3SSipB PF16535.5 gi|240102434|ref|YP_002958743.1| - 0.0011 19.5 9.3 0.18 12.3 2.8 2.2 1 1 1 2 2 2 2 Type III cell invasion protein SipB DUF3584 PF12128.8 gi|240102434|ref|YP_002958743.1| - 0.0011 16.6 17.2 0.0015 16.2 17.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF1515 PF07439.11 gi|240102434|ref|YP_002958743.1| - 0.0013 18.8 2.3 0.0013 18.8 2.3 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1515) LMBR1 PF04791.16 gi|240102434|ref|YP_002958743.1| - 0.0013 17.8 10.2 0.0016 17.5 10.2 1.1 1 0 0 1 1 1 1 LMBR1-like membrane protein Phage_GPO PF05929.11 gi|240102434|ref|YP_002958743.1| - 0.0014 18.3 12.6 0.0021 17.8 12.6 1.3 1 0 0 1 1 1 1 Phage capsid scaffolding protein (GPO) serine peptidase Occludin_ELL PF07303.13 gi|240102434|ref|YP_002958743.1| - 0.0015 19.2 14.0 0.056 14.2 5.6 2.6 1 1 2 3 3 3 2 Occludin homology domain Fib_alpha PF08702.10 gi|240102434|ref|YP_002958743.1| - 0.0017 18.6 25.3 0.016 15.4 11.9 2.2 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.9 gi|240102434|ref|YP_002958743.1| - 0.0017 18.4 29.2 0.26 11.3 21.5 2.7 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FapA PF03961.13 gi|240102434|ref|YP_002958743.1| - 0.0018 17.0 21.8 0.0019 16.9 12.3 2.0 1 1 1 2 2 2 1 Flagellar Assembly Protein A NABP PF07990.12 gi|240102434|ref|YP_002958743.1| - 0.002 17.8 2.3 0.21 11.1 0.5 2.2 2 0 0 2 2 2 1 Nucleic acid binding protein NABP HemX PF04375.14 gi|240102434|ref|YP_002958743.1| - 0.0027 17.1 19.7 0.069 12.4 9.9 2.1 1 1 1 2 2 2 2 HemX, putative uroporphyrinogen-III C-methyltransferase TPR_MLP1_2 PF07926.12 gi|240102434|ref|YP_002958743.1| - 0.0027 17.8 23.7 0.074 13.1 11.1 2.4 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein Syntaxin_2 PF14523.6 gi|240102434|ref|YP_002958743.1| - 0.0031 17.8 22.8 0.0096 16.3 8.6 2.2 1 1 1 2 2 2 1 Syntaxin-like protein AAA_32 PF13654.6 gi|240102434|ref|YP_002958743.1| - 0.0031 16.3 17.1 0.0031 16.3 17.1 1.4 1 1 1 2 2 2 1 AAA domain Snapin_Pallidin PF14712.6 gi|240102434|ref|YP_002958743.1| - 0.0035 17.7 22.9 0.032 14.6 11.9 2.7 1 1 2 3 3 3 2 Snapin/Pallidin HAUS5 PF14817.6 gi|240102434|ref|YP_002958743.1| - 0.0036 16.1 4.8 0.0036 16.1 4.8 2.0 1 1 1 2 2 2 1 HAUS augmin-like complex subunit 5 Lebercilin PF15619.6 gi|240102434|ref|YP_002958743.1| - 0.0068 16.1 23.5 0.28 10.8 23.2 2.2 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease ATG16 PF08614.11 gi|240102434|ref|YP_002958743.1| - 0.0069 16.6 25.4 0.078 13.2 10.4 2.5 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) MCPsignal PF00015.21 gi|240102434|ref|YP_002958743.1| - 0.0075 16.1 15.0 0.25 11.1 5.2 2.2 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HsbA PF12296.8 gi|240102434|ref|YP_002958743.1| - 0.0087 16.5 2.3 2.5 8.6 0.1 2.5 1 1 1 2 2 2 0 Hydrophobic surface binding protein A YabA PF06156.13 gi|240102434|ref|YP_002958743.1| - 0.009 16.6 24.1 0.7 10.6 2.4 3.1 1 1 2 3 3 3 1 Initiation control protein YabA SesA PF17107.5 gi|240102434|ref|YP_002958743.1| - 0.0094 16.1 8.7 0.053 13.7 7.1 2.2 1 1 1 2 2 2 1 N-terminal domain on NACHT_NTPase and P-loop NTPases Vps51 PF08700.11 gi|240102434|ref|YP_002958743.1| - 0.01 15.9 13.5 0.054 13.6 2.1 3.4 1 1 2 3 3 3 0 Vps51/Vps67 Seryl_tRNA_N PF02403.22 gi|240102434|ref|YP_002958743.1| - 0.011 15.9 25.3 0.15 12.3 6.5 3.0 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain MAD PF05557.13 gi|240102434|ref|YP_002958743.1| - 0.011 14.1 26.9 0.023 13.1 25.9 1.6 1 1 0 1 1 1 0 Mitotic checkpoint protein Sec34 PF04136.15 gi|240102434|ref|YP_002958743.1| - 0.012 15.5 16.7 0.48 10.3 3.2 2.8 1 1 2 3 3 3 0 Sec34-like family Laminin_I PF06008.14 gi|240102434|ref|YP_002958743.1| - 0.013 15.3 21.6 0.029 14.1 7.7 2.2 1 1 1 2 2 2 0 Laminin Domain I TMF_TATA_bd PF12325.8 gi|240102434|ref|YP_002958743.1| - 0.014 15.6 12.7 0.014 15.6 12.7 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding CREPT PF16566.5 gi|240102434|ref|YP_002958743.1| - 0.014 15.6 16.8 0.024 14.8 7.6 2.7 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour BORCS7 PF16088.5 gi|240102434|ref|YP_002958743.1| - 0.016 15.4 14.2 0.027 14.7 3.7 2.3 1 1 1 2 2 2 0 BLOC-1-related complex sub-unit 7 MscS_porin PF12795.7 gi|240102434|ref|YP_002958743.1| - 0.017 14.7 21.3 0.17 11.4 16.3 2.4 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain LUC7 PF03194.15 gi|240102434|ref|YP_002958743.1| - 0.017 14.8 15.3 0.029 14.0 15.3 1.4 1 0 0 1 1 1 0 LUC7 N_terminus MbeD_MobD PF04899.12 gi|240102434|ref|YP_002958743.1| - 0.017 15.2 8.5 0.14 12.3 0.5 2.9 2 1 0 2 2 2 0 MbeD/MobD like DUF677 PF05055.12 gi|240102434|ref|YP_002958743.1| - 0.018 13.9 17.8 0.24 10.3 6.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF677) Tropomyosin PF00261.20 gi|240102434|ref|YP_002958743.1| - 0.019 14.3 26.2 0.35 10.2 10.3 2.4 1 1 1 2 2 2 0 Tropomyosin SlyX PF04102.12 gi|240102434|ref|YP_002958743.1| - 0.021 15.4 23.6 0.16 12.6 3.6 3.1 1 1 2 3 3 3 0 SlyX CHDCT2 PF08074.11 gi|240102434|ref|YP_002958743.1| - 0.03 14.5 8.1 0.065 13.4 2.3 2.8 1 1 1 2 2 2 0 CHDCT2 (NUC038) domain Cas_DxTHG PF09455.10 gi|240102434|ref|YP_002958743.1| - 0.031 13.9 7.7 0.046 13.3 7.7 1.3 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family BRE1 PF08647.11 gi|240102434|ref|YP_002958743.1| - 0.031 14.3 3.8 0.031 14.3 3.8 3.2 1 1 2 3 3 3 0 BRE1 E3 ubiquitin ligase KxDL PF10241.9 gi|240102434|ref|YP_002958743.1| - 0.032 14.5 17.9 0.49 10.7 2.7 3.8 1 1 3 4 4 3 0 Uncharacterized conserved protein ERM PF00769.19 gi|240102434|ref|YP_002958743.1| - 0.033 14.0 19.3 0.048 13.5 19.3 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fungal_trans_2 PF11951.8 gi|240102434|ref|YP_002958743.1| - 0.034 13.0 7.2 0.96 8.2 7.2 2.2 1 1 0 1 1 1 0 Fungal specific transcription factor domain CENP-Q PF13094.6 gi|240102434|ref|YP_002958743.1| - 0.036 14.3 22.2 0.65 10.2 5.8 2.8 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF2203 PF09969.9 gi|240102434|ref|YP_002958743.1| - 0.038 14.7 16.1 0.2 12.4 6.5 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) FmiP_Thoc5 PF09766.9 gi|240102434|ref|YP_002958743.1| - 0.04 13.2 19.6 0.053 12.8 19.6 1.1 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 DUF812 PF05667.11 gi|240102434|ref|YP_002958743.1| - 0.04 12.8 27.6 0.095 11.6 27.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) IFT57 PF10498.9 gi|240102434|ref|YP_002958743.1| - 0.045 12.7 26.2 0.42 9.5 24.4 2.5 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 KASH_CCD PF14662.6 gi|240102434|ref|YP_002958743.1| - 0.05 13.4 26.5 0.11 12.4 26.5 1.5 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH ABC_tran_CTD PF16326.5 gi|240102434|ref|YP_002958743.1| - 0.05 13.9 24.0 2.6 8.3 7.8 3.7 1 1 2 3 3 3 0 ABC transporter C-terminal domain HMMR_N PF15905.5 gi|240102434|ref|YP_002958743.1| - 0.052 13.0 28.4 0.046 13.2 27.3 1.4 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Hemagglutinin PF00509.18 gi|240102434|ref|YP_002958743.1| - 0.052 11.9 10.1 0.23 9.8 2.2 2.3 1 1 1 2 2 2 0 Haemagglutinin Uds1 PF15456.6 gi|240102434|ref|YP_002958743.1| - 0.054 13.7 16.6 0.45 10.7 5.5 2.6 1 1 2 3 3 3 0 Up-regulated During Septation FUSC PF04632.12 gi|240102434|ref|YP_002958743.1| - 0.061 11.8 0.1 0.071 11.6 0.1 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Phage_GP20 PF06810.11 gi|240102434|ref|YP_002958743.1| - 0.062 13.1 24.1 0.066 13.0 5.5 2.8 1 1 1 2 2 2 0 Phage minor structural protein GP20 Jnk-SapK_ap_N PF09744.9 gi|240102434|ref|YP_002958743.1| - 0.063 13.5 24.9 0.16 12.2 11.7 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 KID PF02524.14 gi|240102434|ref|YP_002958743.1| - 0.064 13.4 1.7 6.4 7.3 0.1 3.4 2 0 0 2 2 2 0 KID repeat HBM PF16591.5 gi|240102434|ref|YP_002958743.1| - 0.075 12.5 11.2 0.55 9.6 4.7 2.0 1 1 1 2 2 2 0 Helical bimodular sensor domain Vps5 PF09325.10 gi|240102434|ref|YP_002958743.1| - 0.077 12.5 17.9 0.68 9.4 3.5 2.1 1 1 0 2 2 2 0 Vps5 C terminal like DUF2802 PF10975.8 gi|240102434|ref|YP_002958743.1| - 0.08 13.1 0.6 0.08 13.1 0.6 4.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2802) Mod_r PF07200.13 gi|240102434|ref|YP_002958743.1| - 0.087 12.9 23.3 0.8 9.8 10.2 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Alanine_zipper PF11839.8 gi|240102434|ref|YP_002958743.1| - 0.099 13.0 6.3 15 6.0 0.1 3.7 3 1 1 4 4 3 0 Alanine-zipper, major outer membrane lipoprotein Sec3_C PF09763.9 gi|240102434|ref|YP_002958743.1| - 0.1 11.0 13.8 0.059 11.8 3.7 2.1 1 1 1 2 2 2 0 Exocyst complex component Sec3 FemAB PF02388.16 gi|240102434|ref|YP_002958743.1| - 0.11 11.4 19.2 0.25 10.2 6.1 2.0 1 1 1 2 2 2 0 FemAB family Tmemb_cc2 PF10267.9 gi|240102434|ref|YP_002958743.1| - 0.11 11.6 23.5 0.18 10.9 11.6 2.1 1 1 1 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein PilO PF04350.13 gi|240102434|ref|YP_002958743.1| - 0.11 12.6 14.5 0.13 12.4 2.1 2.4 1 1 1 2 2 2 0 Pilus assembly protein, PilO Fez1 PF06818.15 gi|240102434|ref|YP_002958743.1| - 0.12 12.9 22.8 0.7 10.3 14.0 2.1 1 1 1 2 2 2 0 Fez1 Filament PF00038.21 gi|240102434|ref|YP_002958743.1| - 0.12 12.0 25.9 0.9 9.1 7.0 2.4 1 1 1 2 2 2 0 Intermediate filament protein PI_PP_I PF18363.1 gi|240102434|ref|YP_002958743.1| - 0.12 12.6 7.8 2.4 8.4 0.5 3.1 1 1 2 3 3 3 0 Phosphoinositide phosphatase insertion domain Nup54 PF13874.6 gi|240102434|ref|YP_002958743.1| - 0.15 12.2 19.2 0.16 12.1 8.9 2.7 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF2205 PF10224.9 gi|240102434|ref|YP_002958743.1| - 0.16 12.0 24.1 0.55 10.3 1.7 3.5 1 1 2 3 3 3 0 Short coiled-coil protein DASH_Dam1 PF08653.10 gi|240102434|ref|YP_002958743.1| - 0.18 11.7 7.4 3.7 7.4 0.4 3.6 3 1 0 3 3 3 0 DASH complex subunit Dam1 Taxilin PF09728.9 gi|240102434|ref|YP_002958743.1| - 0.18 10.9 23.8 0.65 9.1 9.6 2.4 1 1 1 2 2 2 0 Myosin-like coiled-coil protein Tektin PF03148.14 gi|240102434|ref|YP_002958743.1| - 0.18 10.5 27.8 0.39 9.4 6.4 3.0 1 1 2 3 3 3 0 Tektin family HalX PF08663.10 gi|240102434|ref|YP_002958743.1| - 0.18 12.1 0.4 0.18 12.1 0.4 3.2 2 1 0 2 2 1 0 HalX domain SOGA PF11365.8 gi|240102434|ref|YP_002958743.1| - 0.21 12.7 18.4 0.14 13.3 7.7 2.4 1 1 1 2 2 2 0 Protein SOGA Cob_adeno_trans PF01923.18 gi|240102434|ref|YP_002958743.1| - 0.21 11.7 11.3 0.96 9.6 3.0 2.1 1 1 1 2 2 2 0 Cobalamin adenosyltransferase ALMT PF11744.8 gi|240102434|ref|YP_002958743.1| - 0.21 10.4 12.2 0.25 10.1 12.2 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter PEARLI-4 PF05278.12 gi|240102434|ref|YP_002958743.1| - 0.22 11.1 18.0 0.26 10.8 5.9 2.0 1 1 1 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF465 PF04325.13 gi|240102434|ref|YP_002958743.1| - 0.24 11.5 6.8 2.5 8.2 0.1 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF465) MobC PF05713.11 gi|240102434|ref|YP_002958743.1| - 0.24 11.9 12.5 4.7 7.8 1.0 4.3 3 1 1 4 4 4 0 Bacterial mobilisation protein (MobC) DUF4201 PF13870.6 gi|240102434|ref|YP_002958743.1| - 0.25 11.1 21.5 3.7 7.2 20.7 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) DivIC PF04977.15 gi|240102434|ref|YP_002958743.1| - 0.27 11.0 28.7 0.042 13.6 6.9 3.4 1 1 2 3 3 3 0 Septum formation initiator DUF4407 PF14362.6 gi|240102434|ref|YP_002958743.1| - 0.28 10.5 16.0 1.8 7.8 15.7 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) TMPIT PF07851.13 gi|240102434|ref|YP_002958743.1| - 0.28 10.4 22.9 0.15 11.3 8.9 2.1 1 1 1 2 2 2 0 TMPIT-like protein DUF4665 PF15679.5 gi|240102434|ref|YP_002958743.1| - 0.29 11.8 21.6 4.9 7.8 2.9 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4665) MtrG PF04210.13 gi|240102434|ref|YP_002958743.1| - 0.29 11.0 11.6 1.8 8.5 0.3 4.5 2 1 3 5 5 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G CALCOCO1 PF07888.11 gi|240102434|ref|YP_002958743.1| - 0.35 9.7 23.3 0.71 8.7 23.4 1.5 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like COG2 PF06148.11 gi|240102434|ref|YP_002958743.1| - 0.36 10.9 19.3 2.4 8.3 2.9 3.3 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DASH_Spc19 PF08287.11 gi|240102434|ref|YP_002958743.1| - 0.36 10.7 21.8 0.26 11.2 9.0 2.5 1 1 1 2 2 2 0 Spc19 APG17 PF04108.12 gi|240102434|ref|YP_002958743.1| - 0.37 9.9 16.0 0.45 9.6 5.3 2.1 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF4376 PF14301.6 gi|240102434|ref|YP_002958743.1| - 0.37 11.2 4.2 2.8 8.3 0.7 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4376) V_ATPase_I PF01496.19 gi|240102434|ref|YP_002958743.1| - 0.38 8.6 21.2 0.63 7.9 9.2 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF3829 PF12889.7 gi|240102434|ref|YP_002958743.1| - 0.38 10.2 13.8 0.65 9.4 8.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) Spc24 PF08286.11 gi|240102434|ref|YP_002958743.1| - 0.4 11.0 25.1 2 8.7 6.1 3.2 1 1 1 2 2 1 0 Spc24 subunit of Ndc80 DUF4559 PF15112.6 gi|240102434|ref|YP_002958743.1| - 0.41 10.3 14.7 0.6 9.7 14.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) ADIP PF11559.8 gi|240102434|ref|YP_002958743.1| - 0.42 10.7 22.0 1.1 9.4 9.5 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF4200 PF13863.6 gi|240102434|ref|YP_002958743.1| - 0.42 11.0 28.0 1.5 9.2 6.9 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF16 PF01519.16 gi|240102434|ref|YP_002958743.1| - 0.42 11.1 26.5 3.3 8.3 12.8 3.0 1 1 2 3 3 3 0 Protein of unknown function DUF16 TMCO5 PF14992.6 gi|240102434|ref|YP_002958743.1| - 0.48 9.9 20.3 0.75 9.3 20.3 1.3 1 0 0 1 1 1 0 TMCO5 family YkyA PF10368.9 gi|240102434|ref|YP_002958743.1| - 0.49 10.0 32.4 0.4 10.3 10.7 2.2 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein Nup88 PF10168.9 gi|240102434|ref|YP_002958743.1| - 0.54 8.0 20.3 2.4 5.9 19.8 1.9 1 1 0 1 1 1 0 Nuclear pore component CHASE3 PF05227.13 gi|240102434|ref|YP_002958743.1| - 0.55 10.1 9.7 22 5.0 0.9 2.5 1 1 1 2 2 2 0 CHASE3 domain EMP24_GP25L PF01105.24 gi|240102434|ref|YP_002958743.1| - 0.58 10.1 18.9 0.69 9.8 1.7 3.1 1 1 2 3 3 3 0 emp24/gp25L/p24 family/GOLD Matrilin_ccoil PF10393.9 gi|240102434|ref|YP_002958743.1| - 0.58 10.1 9.8 5.4 7.0 0.3 4.2 2 1 2 4 4 4 0 Trimeric coiled-coil oligomerisation domain of matrilin HrpB7 PF09486.10 gi|240102434|ref|YP_002958743.1| - 0.58 10.5 9.1 3.1 8.2 0.8 2.6 1 1 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) SKA2 PF16740.5 gi|240102434|ref|YP_002958743.1| - 0.59 9.9 18.6 2.5 7.9 3.1 3.1 1 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 Uso1_p115_C PF04871.13 gi|240102434|ref|YP_002958743.1| - 0.6 10.5 26.3 2 8.8 9.9 2.2 1 1 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region SpecificRecomb PF10136.9 gi|240102434|ref|YP_002958743.1| - 0.62 8.3 5.5 0.77 8.0 5.5 1.1 1 0 0 1 1 1 0 Site-specific recombinase SKA1 PF07160.12 gi|240102434|ref|YP_002958743.1| - 0.63 9.9 22.8 7.1 6.4 5.0 2.8 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 Prefoldin_2 PF01920.20 gi|240102434|ref|YP_002958743.1| - 0.65 10.0 32.9 2 8.4 4.7 3.4 1 1 1 3 3 3 0 Prefoldin subunit DUF724 PF05266.14 gi|240102434|ref|YP_002958743.1| - 0.65 9.8 23.6 1.4 8.7 16.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF724) PRKG1_interact PF15898.5 gi|240102434|ref|YP_002958743.1| - 0.66 10.9 24.6 0.57 11.1 10.1 2.4 1 1 2 3 3 3 0 cGMP-dependent protein kinase interacting domain UPF0242 PF06785.11 gi|240102434|ref|YP_002958743.1| - 0.68 10.0 28.1 0.085 13.0 11.9 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF3450 PF11932.8 gi|240102434|ref|YP_002958743.1| - 0.7 9.1 24.4 0.85 8.9 11.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Ax_dynein_light PF10211.9 gi|240102434|ref|YP_002958743.1| - 0.72 9.8 30.3 0.21 11.5 8.9 2.9 1 1 1 2 2 2 0 Axonemal dynein light chain YlqD PF11068.8 gi|240102434|ref|YP_002958743.1| - 0.72 10.2 26.6 0.12 12.8 12.1 2.2 1 1 1 2 2 2 0 YlqD protein DUF4988 PF16378.5 gi|240102434|ref|YP_002958743.1| - 0.75 9.4 13.8 0.44 10.2 0.7 3.3 1 1 2 3 3 3 0 Domain of unknown function WXG100 PF06013.12 gi|240102434|ref|YP_002958743.1| - 0.8 10.0 9.9 17 5.7 1.2 3.8 1 1 1 2 2 2 0 Proteins of 100 residues with WXG SH3BP5 PF05276.14 gi|240102434|ref|YP_002958743.1| - 0.85 9.4 17.3 0.54 10.0 5.4 2.2 1 1 1 2 2 2 0 SH3 domain-binding protein 5 (SH3BP5) Dynamitin PF04912.14 gi|240102434|ref|YP_002958743.1| - 0.89 8.8 24.4 8.1 5.6 24.3 2.0 1 1 0 1 1 1 0 Dynamitin Sec8_exocyst PF04048.14 gi|240102434|ref|YP_002958743.1| - 0.9 9.4 16.9 1.7 8.5 4.8 2.8 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Spectrin PF00435.21 gi|240102434|ref|YP_002958743.1| - 0.96 10.0 18.1 1.3 9.6 9.4 2.3 1 1 1 2 2 2 0 Spectrin repeat YvrJ PF12841.7 gi|240102434|ref|YP_002958743.1| - 0.98 9.0 3.5 2.4 7.7 0.7 2.8 2 1 0 2 2 2 0 YvrJ protein family PspB PF06667.12 gi|240102434|ref|YP_002958743.1| - 1.1 9.4 10.2 0.86 9.7 1.0 3.0 2 1 1 3 3 2 0 Phage shock protein B DUF745 PF05335.13 gi|240102434|ref|YP_002958743.1| - 1.1 8.9 17.2 1 9.1 6.9 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF745) TACC_C PF05010.14 gi|240102434|ref|YP_002958743.1| - 1.1 9.0 24.2 4.1 7.1 9.9 2.1 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal PspA_IM30 PF04012.12 gi|240102434|ref|YP_002958743.1| - 1.2 8.7 24.0 0.9 9.1 1.2 3.0 1 1 2 3 3 3 0 PspA/IM30 family CheZ PF04344.13 gi|240102434|ref|YP_002958743.1| - 1.2 9.0 13.2 0.69 9.8 4.4 2.0 1 1 1 2 2 2 0 Chemotaxis phosphatase, CheZ Tup_N PF08581.10 gi|240102434|ref|YP_002958743.1| - 1.2 9.4 23.3 0.29 11.4 7.1 3.2 1 1 2 3 3 3 0 Tup N-terminal ISG65-75 PF11727.8 gi|240102434|ref|YP_002958743.1| - 1.3 8.2 16.2 0.84 8.8 8.3 2.1 1 1 1 2 2 2 0 Invariant surface glycoprotein Syntaxin-6_N PF09177.11 gi|240102434|ref|YP_002958743.1| - 1.3 9.6 19.0 5.5e+02 1.2 19.0 2.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Com_YlbF PF06133.11 gi|240102434|ref|YP_002958743.1| - 1.4 9.5 23.3 64 4.2 3.8 2.9 1 1 2 3 3 3 0 Control of competence regulator ComK, YlbF/YmcA DUF2408 PF10303.9 gi|240102434|ref|YP_002958743.1| - 1.5 9.4 19.3 1e+03 0.2 19.5 2.9 1 1 0 1 1 0 0 Protein of unknown function (DUF2408) YPEB PF14620.6 gi|240102434|ref|YP_002958743.1| - 1.5 8.1 17.1 20 4.4 17.2 2.2 1 1 0 1 1 1 0 YpeB sporulation DUF4404 PF14357.6 gi|240102434|ref|YP_002958743.1| - 1.5 9.5 16.1 1.6 9.4 4.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) DUF1192 PF06698.11 gi|240102434|ref|YP_002958743.1| - 1.6 8.9 9.2 1.3 9.1 0.5 3.2 2 1 2 4 4 2 0 Protein of unknown function (DUF1192) APG6_N PF17675.1 gi|240102434|ref|YP_002958743.1| - 1.6 9.2 28.2 11 6.6 12.4 2.6 1 1 1 2 2 2 0 Apg6 coiled-coil region Cep57_CLD_2 PF14197.6 gi|240102434|ref|YP_002958743.1| - 1.6 8.8 19.1 3.6 7.7 1.7 3.6 1 1 2 3 3 3 0 Centrosome localisation domain of PPC89 zf-C4pol PF14260.6 gi|240102434|ref|YP_002958743.1| - 1.7 9.2 7.7 10 6.6 1.3 3.6 1 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta Phage_HK97_TLTM PF06120.11 gi|240102434|ref|YP_002958743.1| - 1.8 7.7 16.8 3.5 6.7 16.9 1.4 1 1 0 1 1 1 0 Tail length tape measure protein Prefoldin PF02996.17 gi|240102434|ref|YP_002958743.1| - 1.8 8.5 23.0 2.4 8.1 4.3 3.3 1 1 1 3 3 3 0 Prefoldin subunit TssO PF17561.2 gi|240102434|ref|YP_002958743.1| - 1.9 8.6 19.8 5e+02 0.7 19.6 2.8 1 1 0 1 1 1 0 Type VI secretion system, TssO DUF2935 PF11155.8 gi|240102434|ref|YP_002958743.1| - 1.9 8.8 8.4 44 4.4 8.4 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) Cnn_1N PF07989.11 gi|240102434|ref|YP_002958743.1| - 2.1 8.6 27.1 0.59 10.3 14.2 3.0 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 DUF489 PF04356.12 gi|240102434|ref|YP_002958743.1| - 2.2 8.2 12.1 3.4 7.6 3.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF489) zf-C4H2 PF10146.9 gi|240102434|ref|YP_002958743.1| - 2.3 8.5 20.6 8.2 6.7 20.5 1.8 1 1 0 1 1 1 0 Zinc finger-containing protein DUF4795 PF16043.5 gi|240102434|ref|YP_002958743.1| - 2.3 7.8 24.8 1.9 8.0 5.5 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) DUF4618 PF15397.6 gi|240102434|ref|YP_002958743.1| - 2.3 7.6 23.7 4.2 6.7 6.0 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) DUF4446 PF14584.6 gi|240102434|ref|YP_002958743.1| - 2.4 8.1 19.8 6.7 6.7 5.5 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DLP_helical PF18709.1 gi|240102434|ref|YP_002958743.1| - 2.6 7.2 22.0 1.4 8.1 2.4 3.1 1 1 2 3 3 3 0 Dynamin-like helical domain CorA PF01544.18 gi|240102434|ref|YP_002958743.1| - 2.8 7.2 12.3 2.4 7.4 5.2 2.3 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein PI3K_P85_iSH2 PF16454.5 gi|240102434|ref|YP_002958743.1| - 3.1 7.4 21.7 2.6 7.6 2.8 2.7 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain RPW8 PF05659.11 gi|240102434|ref|YP_002958743.1| - 3.1 7.5 15.8 2.7 7.7 3.6 3.2 1 1 3 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 bZIP_1 PF00170.21 gi|240102434|ref|YP_002958743.1| - 3.1 8.0 22.7 2.6 8.2 3.8 3.5 3 1 0 3 3 3 0 bZIP transcription factor YscO-like PF16789.5 gi|240102434|ref|YP_002958743.1| - 3.1 7.8 27.4 4e+02 0.9 26.8 2.8 1 1 0 1 1 1 0 YscO-like protein ZapB PF06005.12 gi|240102434|ref|YP_002958743.1| - 3.3 8.2 33.5 7.1 7.2 5.4 3.1 1 1 2 3 3 3 0 Cell division protein ZapB Cytochrom_C_2 PF01322.20 gi|240102434|ref|YP_002958743.1| - 3.6 8.5 5.9 3.7 8.5 0.6 2.2 1 1 0 2 2 2 0 Cytochrome C' CENP-H PF05837.12 gi|240102434|ref|YP_002958743.1| - 3.6 8.0 26.6 6.7 7.2 7.8 2.3 1 1 1 2 2 2 0 Centromere protein H (CENP-H) zf-CpG_bind_C PF12269.8 gi|240102434|ref|YP_002958743.1| - 4.5 7.0 19.2 0.65 9.7 6.7 2.4 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain Cauli_AT PF03233.13 gi|240102434|ref|YP_002958743.1| - 4.8 7.1 20.1 2.8 7.8 6.9 2.2 1 1 1 2 2 2 0 Aphid transmission protein HIP1_clath_bdg PF16515.5 gi|240102434|ref|YP_002958743.1| - 4.8 7.8 27.1 5.1 7.8 9.7 3.2 1 1 2 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 AATF-Che1 PF13339.6 gi|240102434|ref|YP_002958743.1| - 5.1 7.8 19.3 1.5e+03 -0.2 19.3 2.1 1 1 0 1 1 0 0 Apoptosis antagonizing transcription factor Fzo_mitofusin PF04799.13 gi|240102434|ref|YP_002958743.1| - 5.2 6.6 18.5 4.4 6.8 2.7 3.1 1 1 1 2 2 1 0 fzo-like conserved region DUF3818 PF12825.7 gi|240102434|ref|YP_002958743.1| - 6 5.8 12.1 39 3.1 11.8 2.1 1 1 1 2 2 2 0 Domain of unknown function in PX-proteins (DUF3818) DUF4094 PF13334.6 gi|240102434|ref|YP_002958743.1| - 6.1 7.3 18.3 23 5.5 4.6 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) DUF5082 PF16888.5 gi|240102434|ref|YP_002958743.1| - 6.2 7.1 23.1 1.4 9.2 13.5 3.1 1 1 1 2 2 1 0 Domain of unknown function (DUF5082) SPT16 PF08644.11 gi|240102434|ref|YP_002958743.1| - 6.3 7.0 16.3 1.7 8.8 7.5 2.2 1 1 1 2 2 2 0 FACT complex subunit (SPT16/CDC68) Mt_ATP-synt_D PF05873.12 gi|240102434|ref|YP_002958743.1| - 6.3 6.6 18.3 5.3 6.9 4.0 2.3 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) TraF_2 PF13729.6 gi|240102434|ref|YP_002958743.1| - 6.8 6.0 6.2 1.2e+02 1.8 6.2 2.2 1 1 0 1 1 1 0 F plasmid transfer operon, TraF, protein GrpE PF01025.19 gi|240102434|ref|YP_002958743.1| - 6.8 6.3 25.9 2.2 7.9 6.5 3.0 1 1 2 3 3 3 0 GrpE DUF2400 PF09674.10 gi|240102434|ref|YP_002958743.1| - 6.9 6.6 7.4 27 4.6 7.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2400) Med4 PF10018.9 gi|240102434|ref|YP_002958743.1| - 7.1 6.3 22.4 4.8 6.8 7.1 2.7 1 1 2 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4208 PF13907.6 gi|240102434|ref|YP_002958743.1| - 7.6 7.1 14.9 4.9 7.7 2.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4208) Mvb12 PF09452.10 gi|240102434|ref|YP_002958743.1| - 7.6 7.0 9.6 4.1 7.9 0.4 3.2 1 1 2 3 3 2 0 ESCRT-I subunit Mvb12 CC2-LZ PF16516.5 gi|240102434|ref|YP_002958743.1| - 8.1 6.9 24.9 4.2 7.8 7.1 3.1 1 1 2 3 3 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator DUF573 PF04504.14 gi|240102434|ref|YP_002958743.1| - 8.7 7.1 8.9 15 6.3 1.9 2.6 1 1 2 3 3 3 0 Protein of unknown function, DUF573 PCRF PF03462.18 gi|240102434|ref|YP_002958743.1| - 9.5 6.0 18.5 7.5 6.4 7.4 2.1 1 1 1 2 2 2 0 PCRF domain QRPTase_C PF01729.19 gi|240102435|ref|YP_002958744.1| - 5e-29 101.2 0.0 6.9e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|240102435|ref|YP_002958744.1| - 1.1e-07 32.2 0.1 4.3e-07 30.3 0.0 1.9 2 1 0 2 2 2 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|240102435|ref|YP_002958744.1| - 2.1e-06 27.7 0.0 4.5e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|240102435|ref|YP_002958744.1| - 8.1e-05 23.0 0.0 0.02 15.2 0.0 2.3 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Zn-ribbon_8 PF09723.10 gi|240102435|ref|YP_002958744.1| - 0.0053 16.8 0.6 0.034 14.2 0.3 2.2 2 0 0 2 2 2 1 Zinc ribbon domain DR2241 PF18069.1 gi|240102435|ref|YP_002958744.1| - 0.17 11.7 0.0 0.5 10.3 0.0 1.8 1 0 0 1 1 1 0 DR2241 stabilising domain DNA_ligase_ZBD PF03119.16 gi|240102435|ref|YP_002958744.1| - 0.18 11.8 1.0 0.71 9.9 0.2 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Lactamase_B_2 PF12706.7 gi|240102436|ref|YP_002958745.1| - 1.6e-08 34.3 0.0 2.1e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|240102436|ref|YP_002958745.1| - 8.7e-07 29.0 0.0 1.4e-06 28.3 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|240102436|ref|YP_002958745.1| - 0.00042 20.4 0.1 0.0019 18.2 0.0 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Metallophos_3 PF14582.6 gi|240102436|ref|YP_002958745.1| - 0.077 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily DUF917 PF06032.12 gi|240102437|ref|YP_002958746.1| - 2.3e-97 326.0 0.1 2.6e-97 325.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) BcrAD_BadFG PF01869.20 gi|240102438|ref|YP_002958747.1| - 6.7e-35 120.9 0.1 9.5e-35 120.4 0.1 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|240102438|ref|YP_002958747.1| - 0.00043 19.8 0.0 0.0008 19.0 0.0 1.4 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.21 gi|240102438|ref|YP_002958747.1| - 0.0041 16.7 0.0 0.0069 16.0 0.0 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain MutL PF13941.6 gi|240102438|ref|YP_002958747.1| - 0.01 14.5 0.0 0.015 14.0 0.0 1.1 1 0 0 1 1 1 0 MutL protein AP2 PF00847.20 gi|240102438|ref|YP_002958747.1| - 0.16 12.2 0.4 7.6 6.9 0.0 2.4 2 0 0 2 2 2 0 AP2 domain DUF2206 PF09971.9 gi|240102439|ref|YP_002958748.1| - 2.2 7.0 8.4 2.3 6.9 6.8 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2206) BPD_transp_1 PF00528.22 gi|240102440|ref|YP_002958749.1| - 5.7e-28 97.9 18.6 5.7e-28 97.9 18.6 2.0 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|240102440|ref|YP_002958749.1| - 0.00035 20.5 0.0 0.00035 20.5 0.0 4.3 4 1 0 4 4 4 2 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|240102441|ref|YP_002958750.1| - 4.4e-39 134.1 13.9 4.4e-39 134.1 13.9 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.14 gi|240102441|ref|YP_002958750.1| - 1.9 9.1 6.8 1.2 9.7 1.3 3.0 3 0 0 3 3 3 0 Renin receptor-like protein DUF5510 PF17629.2 gi|240102441|ref|YP_002958750.1| - 5.7 6.9 10.6 6.4 6.8 1.8 3.4 3 0 0 3 3 3 0 Family of unknown function (DUF5510) SBP_bac_5 PF00496.22 gi|240102442|ref|YP_002958751.1| - 5.4e-73 246.1 7.9 8.2e-73 245.5 7.9 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SIS PF01380.22 gi|240102443|ref|YP_002958752.1| - 8.1e-29 100.1 0.0 2.5e-17 62.9 0.1 2.2 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 gi|240102443|ref|YP_002958752.1| - 5.4e-05 23.2 0.0 0.00015 21.8 0.0 1.8 2 0 0 2 2 2 1 SIS domain bact-PGI_C PF10432.9 gi|240102443|ref|YP_002958752.1| - 0.023 14.8 0.0 0.13 12.3 0.0 2.2 2 1 0 2 2 2 0 Bacterial phospho-glucose isomerase C-terminal SIS domain ComP_DUS PF16732.5 gi|240102443|ref|YP_002958752.1| - 0.23 12.4 0.0 0.39 11.6 0.0 1.3 1 0 0 1 1 1 0 Type IV minor pilin ComP, DNA uptake sequence receptor DUF4015 PF13200.6 gi|240102444|ref|YP_002958753.1| - 8.7e-06 25.0 0.0 2.1e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Putative glycosyl hydrolase domain GHL10 PF02638.15 gi|240102444|ref|YP_002958753.1| - 0.00018 20.7 0.0 0.0034 16.5 0.0 2.3 1 1 0 1 1 1 1 Glycosyl hydrolase-like 10 Glyco_hydro_42 PF02449.15 gi|240102444|ref|YP_002958753.1| - 0.00054 19.4 0.0 0.0023 17.3 0.0 1.9 1 1 0 1 1 1 1 Beta-galactosidase AP_endonuc_2 PF01261.24 gi|240102445|ref|YP_002958754.1| - 4.3e-27 94.9 0.0 9.8e-27 93.8 0.0 1.5 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Ca_bind_SSO6904 PF18249.1 gi|240102445|ref|YP_002958754.1| - 0.14 12.5 0.0 0.78 10.1 0.0 2.2 2 0 0 2 2 2 0 Calcium binding protein SSO6904 GFO_IDH_MocA PF01408.22 gi|240102446|ref|YP_002958755.1| - 5e-27 95.1 0.0 9.5e-27 94.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.19 gi|240102446|ref|YP_002958755.1| - 1.8e-06 28.5 0.0 5.9e-06 26.9 0.0 1.8 2 0 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.17 gi|240102446|ref|YP_002958755.1| - 5.8e-06 26.8 0.0 9.8e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PglD_N PF17836.1 gi|240102446|ref|YP_002958755.1| - 0.018 15.6 0.1 0.04 14.6 0.1 1.5 1 0 0 1 1 1 0 PglD N-terminal domain NAD_binding_2 PF03446.15 gi|240102446|ref|YP_002958755.1| - 0.026 14.7 0.0 0.045 13.9 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|240102446|ref|YP_002958755.1| - 0.068 13.1 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|240102446|ref|YP_002958755.1| - 0.069 13.8 0.0 0.16 12.7 0.0 1.6 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|240102446|ref|YP_002958755.1| - 0.087 12.4 0.3 0.14 11.7 0.3 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|240102446|ref|YP_002958755.1| - 0.088 12.2 0.1 0.15 11.4 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|240102446|ref|YP_002958755.1| - 0.099 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|240102446|ref|YP_002958755.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase HTH_24 PF13412.6 gi|240102447|ref|YP_002958756.1| - 7.7e-10 38.2 0.4 1.7e-09 37.1 0.4 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|240102447|ref|YP_002958756.1| - 5.8e-08 32.4 1.6 1.3e-07 31.3 1.6 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|240102447|ref|YP_002958756.1| - 1.9e-05 24.5 0.3 7.2e-05 22.7 0.1 2.0 2 1 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_Crp_2 PF13545.6 gi|240102447|ref|YP_002958756.1| - 0.0013 18.7 0.2 0.0023 17.9 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|240102447|ref|YP_002958756.1| - 0.0025 17.5 0.1 0.015 15.0 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|240102447|ref|YP_002958756.1| - 0.0028 17.5 0.0 0.0058 16.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|240102447|ref|YP_002958756.1| - 0.0049 16.8 0.1 0.013 15.4 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|240102447|ref|YP_002958756.1| - 0.065 13.0 0.1 0.26 11.2 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain Rrf2 PF02082.20 gi|240102447|ref|YP_002958756.1| - 0.069 13.5 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.6 gi|240102447|ref|YP_002958756.1| - 0.13 12.4 0.0 0.68 10.1 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Amidohydro_1 PF01979.20 gi|240102448|ref|YP_002958757.1| - 4.8e-27 95.2 0.0 6.3e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|240102448|ref|YP_002958757.1| - 2.3e-17 63.6 0.1 2e-09 37.4 0.1 2.3 2 0 0 2 2 2 2 Amidohydrolase family SIS_2 PF13580.6 gi|240102449|ref|YP_002958758.1| - 4.8e-42 143.2 0.2 6.4e-42 142.8 0.2 1.2 1 0 0 1 1 1 1 SIS domain SIS PF01380.22 gi|240102449|ref|YP_002958758.1| - 5.6e-05 23.0 0.2 0.00022 21.1 0.0 1.9 2 0 0 2 2 2 1 SIS domain DUF2529 PF10740.9 gi|240102449|ref|YP_002958758.1| - 0.00026 20.7 0.0 0.14 11.8 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF2529) Acetyltransf_9 PF13527.7 gi|240102450|ref|YP_002958759.1| - 1e-21 77.3 0.1 2.3e-20 73.0 0.0 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|240102450|ref|YP_002958759.1| - 4.3e-09 36.7 0.2 1.1e-08 35.4 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|240102450|ref|YP_002958759.1| - 1.1e-08 35.4 1.3 1.3e-07 31.9 0.2 2.6 2 1 1 3 3 3 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|240102450|ref|YP_002958759.1| - 6.8e-07 29.2 0.0 1.5e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|240102450|ref|YP_002958759.1| - 9e-07 28.9 0.0 3.2e-06 27.1 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|240102450|ref|YP_002958759.1| - 1.8e-06 27.6 0.0 2e-05 24.2 0.0 2.4 2 1 0 2 2 2 1 Putative acetyl-transferase Acetyltransf_CG PF14542.6 gi|240102450|ref|YP_002958759.1| - 0.0078 16.3 0.1 0.028 14.5 0.0 2.0 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|240102450|ref|YP_002958759.1| - 0.0097 16.6 0.0 0.049 14.3 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|240102450|ref|YP_002958759.1| - 0.088 12.4 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_18 PF18014.1 gi|240102450|ref|YP_002958759.1| - 0.12 12.3 0.0 0.36 10.7 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Peptidase_M14 PF00246.24 gi|240102451|ref|YP_002958760.1| - 2.1e-17 63.9 0.0 2.3e-16 60.5 0.0 2.0 1 1 0 1 1 1 1 Zinc carboxypeptidase AstE_AspA PF04952.14 gi|240102451|ref|YP_002958760.1| - 0.0028 16.8 0.0 0.0046 16.1 0.0 1.3 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF2817 PF10994.8 gi|240102451|ref|YP_002958760.1| - 0.11 11.9 0.3 8.3 5.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2817) Ceramidase_alk PF04734.13 gi|240102452|ref|YP_002958761.1| - 2e-12 46.5 0.0 1.6e-08 33.7 0.0 2.8 3 0 0 3 3 3 2 Neutral/alkaline non-lysosomal ceramidase, N-terminal SWIRM-assoc_1 PF16495.5 gi|240102452|ref|YP_002958761.1| - 0.017 15.0 0.0 0.042 13.8 0.0 1.6 1 0 0 1 1 1 0 SWIRM-associated region 1 DUF4015 PF13200.6 gi|240102453|ref|YP_002958762.1| - 6.9e-13 48.3 0.0 1.2e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain BPL_N PF09825.9 gi|240102453|ref|YP_002958762.1| - 8.4e-10 38.3 0.3 0.0018 17.4 0.7 2.7 3 0 0 3 3 3 2 Biotin-protein ligase, N terminal GHL6 PF14871.6 gi|240102453|ref|YP_002958762.1| - 1.7e-08 34.7 0.0 3.1e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 GHL10 PF02638.15 gi|240102453|ref|YP_002958762.1| - 6.6e-06 25.4 0.4 3.5e-05 23.0 0.4 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase-like 10 GATase PF00117.28 gi|240102453|ref|YP_002958762.1| - 0.00018 21.3 0.1 0.00075 19.3 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase class-I GA-like PF17573.2 gi|240102453|ref|YP_002958762.1| - 0.0034 17.2 0.4 0.0095 15.8 0.4 1.8 1 0 0 1 1 1 1 GA-like domain DUF4434 PF14488.6 gi|240102453|ref|YP_002958762.1| - 0.004 17.2 0.0 0.0086 16.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4434) ThuA PF06283.11 gi|240102453|ref|YP_002958762.1| - 0.01 16.1 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 1 Trehalose utilisation SNO PF01174.19 gi|240102453|ref|YP_002958762.1| - 0.017 15.0 0.0 0.92 9.3 0.0 2.3 2 0 0 2 2 2 0 SNO glutamine amidotransferase family Creatininase PF02633.14 gi|240102453|ref|YP_002958762.1| - 0.13 11.7 0.0 0.39 10.2 0.0 1.8 2 0 0 2 2 2 0 Creatinine amidohydrolase Spore_YunB PF09560.10 gi|240102453|ref|YP_002958762.1| - 0.13 12.3 0.0 3.6 7.7 0.0 2.7 2 0 0 2 2 2 0 Sporulation protein YunB (Spo_YunB) GATase_3 PF07685.14 gi|240102453|ref|YP_002958762.1| - 0.17 11.5 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF819 PF05684.12 gi|240102454|ref|YP_002958763.1| - 1.4e-44 152.7 25.5 1.7e-44 152.4 25.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF819) Peptidase_M20 PF01546.28 gi|240102455|ref|YP_002958764.1| - 6e-39 133.9 0.1 1e-38 133.2 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|240102455|ref|YP_002958764.1| - 2.3e-20 72.5 0.0 6e-20 71.2 0.0 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|240102455|ref|YP_002958764.1| - 0.00026 20.7 0.0 0.00046 19.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 DUF2703 PF10865.8 gi|240102455|ref|YP_002958764.1| - 0.16 12.1 0.0 12 6.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF2703) malic PF00390.19 gi|240102456|ref|YP_002958765.1| - 4.4e-29 101.6 1.4 1.3e-26 93.5 1.4 2.8 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|240102456|ref|YP_002958765.1| - 6.1e-26 91.2 3.1 5.3e-25 88.2 3.1 2.3 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain Shikimate_DH PF01488.20 gi|240102456|ref|YP_002958765.1| - 0.00014 21.9 0.6 0.00036 20.6 0.6 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|240102456|ref|YP_002958765.1| - 0.00015 21.2 0.8 0.00031 20.2 0.8 1.4 1 0 0 1 1 1 1 ThiF family ELFV_dehydrog PF00208.21 gi|240102456|ref|YP_002958765.1| - 0.00088 19.1 0.7 0.0015 18.3 0.7 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FAD_binding_3 PF01494.19 gi|240102456|ref|YP_002958765.1| - 0.0025 17.1 0.2 0.0042 16.4 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|240102456|ref|YP_002958765.1| - 0.011 15.7 0.2 0.026 14.5 0.2 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.14 gi|240102456|ref|YP_002958765.1| - 0.017 14.3 0.1 0.03 13.6 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|240102456|ref|YP_002958765.1| - 0.04 13.2 5.2 0.098 11.9 5.2 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|240102456|ref|YP_002958765.1| - 0.046 13.0 3.8 0.12 11.6 2.6 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|240102456|ref|YP_002958765.1| - 0.046 14.0 0.6 0.11 12.7 0.6 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DUF1188 PF06690.11 gi|240102456|ref|YP_002958765.1| - 0.22 11.0 1.2 0.37 10.3 0.1 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1188) 2-Hacid_dh_C PF02826.19 gi|240102456|ref|YP_002958765.1| - 1.9 7.8 6.8 0.28 10.5 1.2 2.5 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Fer4_20 PF14691.6 gi|240102458|ref|YP_002958767.1| - 2.4e-43 146.5 0.2 4.1e-43 145.7 0.2 1.4 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|240102458|ref|YP_002958767.1| - 5.3e-42 144.0 1.7 9.7e-42 143.2 1.7 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|240102458|ref|YP_002958767.1| - 3.7e-17 62.7 7.2 1.8e-09 38.0 0.3 3.7 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|240102458|ref|YP_002958767.1| - 6.6e-17 61.7 3.2 1.9e-11 43.8 0.1 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|240102458|ref|YP_002958767.1| - 2.3e-10 40.6 0.2 1.1e-08 35.2 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|240102458|ref|YP_002958767.1| - 3e-09 36.5 0.1 0.00093 18.5 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|240102458|ref|YP_002958767.1| - 8.5e-08 31.7 1.1 0.00026 20.2 0.1 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|240102458|ref|YP_002958767.1| - 1.7e-07 30.8 0.2 3.6e-06 26.4 0.0 2.4 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|240102458|ref|YP_002958767.1| - 5.8e-07 28.6 6.6 6.4e-06 25.1 0.9 2.6 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.24 gi|240102458|ref|YP_002958767.1| - 1.8e-06 27.8 3.7 0.00099 18.8 0.3 4.0 4 0 0 4 4 4 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|240102458|ref|YP_002958767.1| - 6.9e-06 25.5 1.0 0.00011 21.6 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|240102458|ref|YP_002958767.1| - 8e-06 25.2 5.0 0.00012 21.3 0.6 3.1 3 0 0 3 3 3 1 FAD binding domain Shikimate_DH PF01488.20 gi|240102458|ref|YP_002958767.1| - 1.3e-05 25.3 1.2 0.19 11.8 0.1 3.6 4 0 0 4 4 3 1 Shikimate / quinate 5-dehydrogenase FAD_oxidored PF12831.7 gi|240102458|ref|YP_002958767.1| - 2.1e-05 24.1 4.4 0.0013 18.2 0.1 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|240102458|ref|YP_002958767.1| - 2.4e-05 24.7 2.8 0.011 16.2 0.5 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding PALP PF00291.25 gi|240102458|ref|YP_002958767.1| - 9e-05 22.0 0.0 0.1 12.0 0.0 2.3 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme 2-Hacid_dh_C PF02826.19 gi|240102458|ref|YP_002958767.1| - 0.0001 21.8 0.1 0.14 11.5 0.0 3.2 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|240102458|ref|YP_002958767.1| - 0.00012 21.5 0.9 0.008 15.5 0.0 2.9 2 1 1 3 3 3 1 Flavin containing amine oxidoreductase FMO-like PF00743.19 gi|240102458|ref|YP_002958767.1| - 0.00061 18.3 0.1 0.0066 14.9 0.0 2.0 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like XdhC_C PF13478.6 gi|240102458|ref|YP_002958767.1| - 0.00063 20.2 0.2 0.13 12.8 0.0 2.5 2 0 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|240102458|ref|YP_002958767.1| - 0.0019 18.1 1.9 0.25 11.2 0.3 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|240102458|ref|YP_002958767.1| - 0.0039 17.7 2.2 0.51 11.0 0.1 3.6 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|240102458|ref|YP_002958767.1| - 0.005 16.4 0.1 0.4 10.2 0.0 2.3 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Lycopene_cycl PF05834.12 gi|240102458|ref|YP_002958767.1| - 0.013 14.6 0.2 0.013 14.6 0.2 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein TrkA_N PF02254.18 gi|240102458|ref|YP_002958767.1| - 0.041 14.2 0.2 6.4 7.1 0.0 3.1 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|240102458|ref|YP_002958767.1| - 0.05 13.6 1.9 0.12 12.3 0.2 2.3 3 0 0 3 3 2 0 FAD-NAD(P)-binding Hydrolase_6 PF13344.6 gi|240102458|ref|YP_002958767.1| - 0.089 12.9 0.0 0.24 11.5 0.0 1.8 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase K_oxygenase PF13434.6 gi|240102458|ref|YP_002958767.1| - 0.16 11.1 0.0 7.5 5.6 0.0 2.8 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_10 PF13237.6 gi|240102458|ref|YP_002958767.1| - 1.9 8.7 6.5 4.6 7.4 6.5 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain DHODB_Fe-S_bind PF10418.9 gi|240102459|ref|YP_002958768.1| - 4e-13 48.9 0.6 6.4e-13 48.3 0.6 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B PPS_PS PF02006.16 gi|240102460|ref|YP_002958769.1| - 2.4e-75 251.9 0.5 3e-75 251.6 0.5 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase HTH_19 PF12844.7 gi|240102461|ref|YP_002958770.1| - 4.3e-10 39.5 0.1 1.9e-09 37.4 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|240102461|ref|YP_002958770.1| - 4.4e-09 36.6 0.0 1.1e-08 35.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|240102461|ref|YP_002958770.1| - 5.4e-09 36.0 0.0 1.5e-08 34.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|240102461|ref|YP_002958770.1| - 0.0042 16.6 0.0 0.014 14.9 0.0 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 gi|240102461|ref|YP_002958770.1| - 0.011 15.5 0.0 0.065 13.1 0.0 2.1 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MqsA_antitoxin PF15731.5 gi|240102461|ref|YP_002958770.1| - 0.018 15.1 0.0 0.056 13.6 0.0 1.9 2 1 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Phage_CI_repr PF07022.13 gi|240102461|ref|YP_002958770.1| - 0.034 14.2 0.0 0.062 13.4 0.0 1.7 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Hpr_kinase_N PF02603.16 gi|240102461|ref|YP_002958770.1| - 0.046 13.7 0.1 1.9 8.6 0.0 2.2 2 0 0 2 2 2 0 HPr Serine kinase N terminus HTH_26 PF13443.6 gi|240102461|ref|YP_002958770.1| - 0.049 14.1 0.0 0.14 12.6 0.0 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.12 gi|240102461|ref|YP_002958770.1| - 0.091 12.7 0.0 0.3 11.1 0.0 1.9 1 0 0 1 1 1 0 HTH domain HTH_37 PF13744.6 gi|240102461|ref|YP_002958770.1| - 0.12 12.3 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Polysacc_synt_3 PF13440.6 gi|240102462|ref|YP_002958771.1| - 0.0071 15.6 7.1 0.047 12.9 7.1 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein STT3 PF02516.14 gi|240102463|ref|YP_002958772.1| - 2.2e-18 66.5 22.1 4.6e-11 42.3 22.1 2.3 2 0 0 2 2 2 2 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|240102463|ref|YP_002958772.1| - 2.6e-05 24.5 15.1 2.6e-05 24.5 15.1 3.2 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Invasin_D3 PF09134.10 gi|240102463|ref|YP_002958772.1| - 0.23 11.8 1.0 0.33 11.3 0.0 1.7 2 0 0 2 2 2 0 Invasin, domain 3 Phage_holin_7_1 PF16081.5 gi|240102464|ref|YP_002958773.1| - 0.0063 16.7 0.4 0.031 14.5 0.2 2.1 2 0 0 2 2 2 1 Mycobacterial 2 TMS Phage Holin (M2 Hol) Family T6PP_N PF18572.1 gi|240102464|ref|YP_002958773.1| - 0.13 12.2 0.6 0.38 10.6 0.1 2.1 2 1 0 2 2 2 0 Trehalose-6-phosphate phosphatase N-terminal helical bundle domain DUF481 PF04338.12 gi|240102464|ref|YP_002958773.1| - 0.2 11.6 0.3 0.54 10.2 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF481 WHEP-TRS PF00458.20 gi|240102464|ref|YP_002958773.1| - 0.26 11.5 2.2 19 5.5 1.0 2.3 2 0 0 2 2 2 0 WHEP-TRS domain DUF4320 PF14208.6 gi|240102464|ref|YP_002958773.1| - 1.8 8.6 13.5 3.6 7.7 5.0 3.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4320) DUF3634 PF12321.8 gi|240102464|ref|YP_002958773.1| - 3 8.3 8.2 1.1 9.7 2.5 2.8 1 1 3 4 4 4 0 Protein of unknown function (DUF3634) Bac_rhamnosid_C PF17390.2 gi|240102464|ref|YP_002958773.1| - 4.8 7.0 28.4 1.2 8.9 1.0 6.6 1 1 5 6 6 6 0 Bacterial alpha-L-rhamnosidase C-terminal domain Glycos_transf_2 PF00535.26 gi|240102465|ref|YP_002958774.1| - 3.1e-27 95.5 0.0 4.9e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|240102465|ref|YP_002958774.1| - 6.4e-08 32.8 0.0 1.1e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7N PF13733.6 gi|240102465|ref|YP_002958774.1| - 0.044 13.4 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 N-terminal region of glycosyl transferase group 7 DUF373 PF04123.13 gi|240102465|ref|YP_002958774.1| - 1.5 8.2 14.0 0.12 11.7 8.8 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF373) Glyco_transf_4 PF13439.6 gi|240102466|ref|YP_002958775.1| - 2.5e-23 82.9 0.1 4.7e-23 82.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|240102466|ref|YP_002958775.1| - 3.8e-23 81.9 0.0 7.4e-23 80.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|240102466|ref|YP_002958775.1| - 5e-23 82.3 0.2 9.9e-23 81.3 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|240102466|ref|YP_002958775.1| - 2.5e-18 66.8 0.0 5.6e-18 65.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|240102466|ref|YP_002958775.1| - 1e-06 28.8 0.0 2.1e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like HEM4 PF02602.15 gi|240102466|ref|YP_002958775.1| - 0.024 14.0 0.0 0.047 13.0 0.0 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD CarboxypepD_reg PF13620.6 gi|240102467|ref|YP_002958776.1| - 4.2e-05 23.7 2.4 4.2e-05 23.7 2.4 9.9 11 1 1 12 12 12 1 Carboxypeptidase regulatory-like domain S_layer_C PF05124.12 gi|240102467|ref|YP_002958776.1| - 7.3e-05 22.9 0.1 0.00033 20.7 0.1 2.2 1 1 0 1 1 1 1 S-layer like family, C-terminal region Dioxygenase_C PF00775.21 gi|240102467|ref|YP_002958776.1| - 0.03 13.8 0.1 0.075 12.5 0.1 1.6 1 0 0 1 1 1 0 Dioxygenase zf-C2H2 PF00096.26 gi|240102469|ref|YP_002958778.1| - 1.5e-05 25.1 0.9 2.2e-05 24.6 0.9 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|240102469|ref|YP_002958778.1| - 0.00053 20.6 0.5 0.00078 20.1 0.5 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger zf-CSL PF05207.13 gi|240102469|ref|YP_002958778.1| - 0.00059 19.5 0.0 0.0006 19.5 0.0 1.1 1 0 0 1 1 1 1 CSL zinc finger GAGA PF09237.11 gi|240102469|ref|YP_002958778.1| - 0.015 15.1 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 GAGA factor zf-Mss51 PF13824.6 gi|240102469|ref|YP_002958778.1| - 0.14 12.3 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF629 PF04780.12 gi|240102469|ref|YP_002958778.1| - 0.17 10.4 0.0 0.17 10.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF629) Herpes_U59 PF04529.12 gi|240102470|ref|YP_002958779.1| - 0.02 14.0 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus U59 protein GlutR_dimer PF00745.20 gi|240102470|ref|YP_002958779.1| - 0.95 9.9 4.6 0.53 10.8 1.0 2.4 3 0 0 3 3 3 0 Glutamyl-tRNAGlu reductase, dimerisation domain EamA PF00892.20 gi|240102472|ref|YP_002958781.1| - 1.8e-38 131.8 25.6 1.8e-21 76.7 8.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|240102472|ref|YP_002958781.1| - 3.7e-06 26.5 2.4 0.00024 20.6 0.7 2.2 1 1 1 2 2 2 2 Triose-phosphate Transporter family OsmC PF02566.19 gi|240102473|ref|YP_002958782.1| - 2.9e-21 75.8 0.0 4.1e-21 75.3 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein ADH_zinc_N PF00107.26 gi|240102473|ref|YP_002958782.1| - 0.021 14.8 0.0 0.032 14.2 0.0 1.3 1 1 0 1 1 1 0 Zinc-binding dehydrogenase tRNA_NucTransf2 PF09249.11 gi|240102476|ref|YP_002958785.1| - 6.2e-39 132.7 0.0 1e-38 132.1 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|240102476|ref|YP_002958785.1| - 1.8e-13 50.6 0.2 8.9e-13 48.3 0.0 2.2 2 0 0 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|240102476|ref|YP_002958785.1| - 0.042 14.0 0.0 0.098 12.8 0.0 1.6 1 1 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain OAS1_C PF10421.9 gi|240102476|ref|YP_002958785.1| - 0.06 12.9 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus VAPB_antitox PF02697.14 gi|240102476|ref|YP_002958785.1| - 1.5 9.6 5.2 1 10.2 0.1 3.1 3 0 0 3 3 3 0 Putative antitoxin LigT_PEase PF02834.16 gi|240102477|ref|YP_002958786.1| - 4.2e-37 126.2 0.2 6.8e-21 74.3 0.1 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|240102477|ref|YP_002958786.1| - 5.9e-15 55.7 0.0 7.4e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.6 gi|240102477|ref|YP_002958786.1| - 6.2e-15 55.4 0.0 7.8e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily NIR_SIR_ferr PF03460.17 gi|240102477|ref|YP_002958786.1| - 0.1 12.4 0.1 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain Pribosyltran PF00156.27 gi|240102478|ref|YP_002958787.1| - 3.2e-29 101.5 0.3 3.9e-29 101.2 0.3 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|240102478|ref|YP_002958787.1| - 4.4e-06 26.3 0.1 5.7e-06 25.9 0.1 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|240102478|ref|YP_002958787.1| - 0.0092 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Pribosyl_synth PF14572.6 gi|240102478|ref|YP_002958787.1| - 0.012 15.6 0.5 0.017 15.1 0.5 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain MctB PF11382.8 gi|240102478|ref|YP_002958787.1| - 0.024 14.4 0.1 0.046 13.4 0.0 1.4 2 0 0 2 2 2 0 Copper transport outer membrane protein, MctB Lar_N PF09861.9 gi|240102478|ref|YP_002958787.1| - 0.093 11.9 0.3 0.13 11.5 0.3 1.1 1 0 0 1 1 1 0 Lactate racemase N-terminal domain Ribonuc_red_lgC PF02867.15 gi|240102479|ref|YP_002958788.1| - 6.5e-237 787.2 0.0 8.7e-237 786.8 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|240102479|ref|YP_002958788.1| - 1.1e-27 95.8 0.0 2.8e-27 94.5 0.0 1.8 1 1 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|240102479|ref|YP_002958788.1| - 6.1e-22 78.0 1.1 2.3e-21 76.2 1.1 2.1 1 0 0 1 1 1 1 ATP cone domain Rubrerythrin PF02915.17 gi|240102480|ref|YP_002958789.1| - 8e-09 36.0 8.5 2.9e-08 34.2 7.8 2.2 1 1 0 1 1 1 1 Rubrerythrin DUF2335 PF10097.9 gi|240102480|ref|YP_002958789.1| - 1 9.4 4.3 0.87 9.6 1.0 2.4 2 1 1 3 3 3 0 Predicted membrane protein (DUF2335) Hydrolase_6 PF13344.6 gi|240102481|ref|YP_002958790.1| - 1.4e-29 102.1 0.0 2.1e-28 98.4 0.0 2.2 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|240102481|ref|YP_002958790.1| - 3e-21 75.3 0.0 1.1e-20 73.5 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|240102481|ref|YP_002958790.1| - 1.7e-08 35.0 0.0 0.003 17.9 0.0 3.1 1 1 2 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|240102481|ref|YP_002958790.1| - 6.6e-07 29.6 0.3 0.00047 20.3 0.0 3.1 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|240102481|ref|YP_002958790.1| - 0.00011 21.8 0.0 0.00021 21.0 0.0 1.6 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Lactamase_B_3 PF13483.6 gi|240102482|ref|YP_002958791.1| - 4.7e-33 114.4 0.0 5.9e-33 114.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|240102482|ref|YP_002958791.1| - 1.1e-22 80.6 0.0 1.4e-22 80.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|240102482|ref|YP_002958791.1| - 8.8e-12 45.4 4.0 2e-11 44.3 2.2 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|240102482|ref|YP_002958791.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily Succ_CoA_lig PF13607.6 gi|240102483|ref|YP_002958792.1| - 3.5e-54 182.3 1.1 1.2e-53 180.6 0.9 2.0 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|240102483|ref|YP_002958792.1| - 9.9e-27 93.7 0.1 1.2e-24 87.0 0.1 2.4 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|240102483|ref|YP_002958792.1| - 1.9e-17 63.7 0.7 5.7e-17 62.2 0.7 1.9 1 0 0 1 1 1 1 CoA binding domain DUF4849 PF16141.5 gi|240102483|ref|YP_002958792.1| - 0.13 11.5 0.1 0.24 10.6 0.1 1.4 1 0 0 1 1 1 0 Putative glycoside hydrolase Family 18, chitinase_18 TPP_enzyme_C PF02775.21 gi|240102484|ref|YP_002958793.1| - 2.1e-29 102.3 1.3 3e-29 101.8 0.3 1.8 2 0 0 2 2 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|240102484|ref|YP_002958793.1| - 1.1e-15 58.1 0.1 1.7e-15 57.4 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_7 PF12838.7 gi|240102484|ref|YP_002958793.1| - 7.9e-08 32.8 11.2 1.6e-06 28.6 10.5 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|240102484|ref|YP_002958793.1| - 9.4e-08 31.6 19.6 1.5e-06 27.7 3.3 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|240102484|ref|YP_002958793.1| - 6e-06 26.3 9.7 6e-06 26.3 9.7 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102484|ref|YP_002958793.1| - 3.2e-05 23.9 13.0 0.00011 22.2 12.5 2.2 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|240102484|ref|YP_002958793.1| - 5.9e-05 23.1 9.6 0.053 13.7 2.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|240102484|ref|YP_002958793.1| - 0.00039 20.4 17.7 0.0045 17.0 2.2 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|240102484|ref|YP_002958793.1| - 0.00039 20.3 2.0 0.00039 20.3 2.0 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Transket_pyr PF02779.24 gi|240102484|ref|YP_002958793.1| - 0.039 13.6 0.2 0.65 9.6 0.1 2.3 2 0 0 2 2 2 0 Transketolase, pyrimidine binding domain DXP_synthase_N PF13292.6 gi|240102484|ref|YP_002958793.1| - 0.044 13.0 0.4 0.19 10.9 0.3 1.9 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase TmoB PF06234.12 gi|240102484|ref|YP_002958793.1| - 0.19 11.8 0.7 1.2 9.3 0.1 2.5 3 0 0 3 3 2 0 Toluene-4-monooxygenase system protein B (TmoB) Fer4_16 PF13484.6 gi|240102484|ref|YP_002958793.1| - 0.31 12.0 12.6 0.3 12.1 1.8 3.3 2 1 3 5 5 5 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|240102484|ref|YP_002958793.1| - 0.35 11.6 5.3 3.1 8.6 0.7 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|240102484|ref|YP_002958793.1| - 0.43 11.2 13.5 5.1 7.7 2.1 3.9 3 1 1 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|240102484|ref|YP_002958793.1| - 1.1 9.8 11.3 1 9.9 1.2 2.9 2 1 1 3 3 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|240102485|ref|YP_002958794.1| - 3.5e-39 134.7 0.2 4.1e-39 134.5 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Hist_deacetyl PF00850.19 gi|240102486|ref|YP_002958795.1| - 3.4e-66 223.8 0.0 5.2e-66 223.2 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain CcmH PF03918.14 gi|240102487|ref|YP_002958796.1| - 0.062 12.6 0.1 0.13 11.6 0.1 1.5 1 0 0 1 1 1 0 Cytochrome C biogenesis protein ArAE_2 PF10334.9 gi|240102487|ref|YP_002958796.1| - 0.085 12.7 0.3 0.14 12.0 0.3 1.3 1 0 0 1 1 1 0 Aromatic acid exporter family member 2 YbjN PF10722.9 gi|240102487|ref|YP_002958796.1| - 0.093 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative bacterial sensory transduction regulator Arginase PF00491.21 gi|240102488|ref|YP_002958797.1| - 2.3e-63 214.3 0.0 2.7e-63 214.1 0.0 1.0 1 0 0 1 1 1 1 Arginase family Voltage_CLC PF00654.20 gi|240102490|ref|YP_002958799.1| - 1.9e-88 297.1 47.5 1.9e-88 297.1 47.5 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|240102490|ref|YP_002958799.1| - 5e-23 81.3 0.5 3.7e-14 52.9 0.3 2.5 2 0 0 2 2 2 2 CBS domain RELT PF12606.8 gi|240102490|ref|YP_002958799.1| - 1.4 7.9 6.4 5.6 6.0 0.1 3.2 2 0 0 2 2 2 0 Tumour necrosis factor receptor superfamily member 19 PHP_C PF13263.6 gi|240102491|ref|YP_002958800.1| - 0.00049 19.8 0.0 0.0013 18.5 0.0 1.7 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|240102491|ref|YP_002958800.1| - 0.015 15.6 0.0 0.022 15.1 0.0 1.5 1 1 0 1 1 1 0 PHP domain HypA PF01155.19 gi|240102491|ref|YP_002958800.1| - 0.025 14.6 0.7 0.82 9.7 0.1 2.5 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_10 PF10058.9 gi|240102491|ref|YP_002958800.1| - 0.06 13.1 0.5 0.12 12.1 0.5 1.5 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF4379 PF14311.6 gi|240102491|ref|YP_002958800.1| - 0.062 13.7 0.2 0.13 12.6 0.2 1.5 1 0 0 1 1 1 0 Probable Zinc-ribbon domain SPOUT_MTase_2 PF14419.6 gi|240102491|ref|YP_002958800.1| - 0.11 11.8 0.0 0.39 10.1 0.0 1.8 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP zinc_ribbon_4 PF13717.6 gi|240102491|ref|YP_002958800.1| - 0.16 11.9 1.0 0.34 10.9 1.0 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|240102491|ref|YP_002958800.1| - 0.2 11.6 0.7 0.31 10.9 0.7 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) MazE_antitoxin PF04014.18 gi|240102492|ref|YP_002958801.1| - 5e-10 39.1 0.6 8.3e-10 38.4 0.1 1.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|240102492|ref|YP_002958801.1| - 0.0017 18.7 0.0 0.0024 18.3 0.0 1.3 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin WG_beta_rep PF14903.6 gi|240102492|ref|YP_002958801.1| - 0.0094 16.2 0.2 0.021 15.1 0.1 1.7 2 0 0 2 2 2 1 WG containing repeat DUF2118 PF09891.9 gi|240102492|ref|YP_002958801.1| - 0.032 14.2 1.4 0.035 14.0 1.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) AIRS PF00586.24 gi|240102493|ref|YP_002958802.1| - 3.3e-17 62.9 0.1 5.6e-17 62.2 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|240102493|ref|YP_002958802.1| - 6.2e-07 29.7 0.0 8.9e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain HTH_5 PF01022.20 gi|240102494|ref|YP_002958803.1| - 9.5e-11 41.4 2.0 1.3e-10 40.9 0.3 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|240102494|ref|YP_002958803.1| - 1e-07 31.9 0.0 2.2e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain ArsR PF09824.9 gi|240102494|ref|YP_002958803.1| - 0.059 13.0 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 ArsR transcriptional regulator COOH-NH2_lig PF14395.6 gi|240102494|ref|YP_002958803.1| - 0.084 12.1 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Phage phiEco32-like COOH.NH2 ligase-type 2 MazG PF03819.17 gi|240102495|ref|YP_002958804.1| - 2e-15 56.7 0.1 1.6e-14 53.8 0.1 1.9 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|240102495|ref|YP_002958804.1| - 0.00027 21.1 0.0 0.0004 20.6 0.0 1.2 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|240102495|ref|YP_002958804.1| - 0.00073 19.9 0.8 0.0016 18.9 0.8 1.6 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase LPG_synthase_TM PF03706.13 gi|240102496|ref|YP_002958805.1| - 1.4e-42 146.3 25.1 2.7e-42 145.3 25.1 1.5 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_1 PF00534.20 gi|240102497|ref|YP_002958806.1| - 8.5e-43 145.8 0.0 1.3e-42 145.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|240102497|ref|YP_002958806.1| - 1.2e-34 119.6 0.0 1.9e-34 119.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|240102497|ref|YP_002958806.1| - 1.4e-26 93.5 0.3 2.2e-26 92.8 0.3 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|240102497|ref|YP_002958806.1| - 7.4e-14 52.5 0.0 1.5e-13 51.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|240102497|ref|YP_002958806.1| - 8.1e-10 39.0 0.0 1.4e-08 35.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|240102497|ref|YP_002958806.1| - 6.7e-08 32.5 0.1 0.001 18.8 0.0 2.4 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|240102497|ref|YP_002958806.1| - 1.2e-06 28.6 0.0 2e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_5 PF16994.5 gi|240102497|ref|YP_002958806.1| - 0.00048 19.8 0.0 0.0012 18.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl-transferase family 4 PIGA PF08288.12 gi|240102497|ref|YP_002958806.1| - 0.0057 17.2 0.0 0.018 15.6 0.0 1.8 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Glyco_transf_20 PF00982.21 gi|240102497|ref|YP_002958806.1| - 0.091 11.4 0.0 9.6 4.7 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase family 20 Polysacc_deac_1 PF01522.21 gi|240102498|ref|YP_002958807.1| - 2.1e-16 59.9 0.0 2.9e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|240102498|ref|YP_002958807.1| - 0.00055 19.7 0.0 0.00074 19.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) DUF3473 PF11959.8 gi|240102498|ref|YP_002958807.1| - 0.14 12.2 0.8 0.6 10.1 0.8 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF3473) Radical_SAM PF04055.21 gi|240102499|ref|YP_002958808.1| - 5.5e-23 82.2 0.8 1.9e-21 77.2 0.1 2.8 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|240102499|ref|YP_002958808.1| - 1.3e-06 28.7 1.3 1.6e-06 28.4 0.1 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain DiS_P_DiS PF06750.13 gi|240102499|ref|YP_002958808.1| - 0.011 15.8 1.9 0.028 14.5 0.1 2.2 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain ADK_lid PF05191.14 gi|240102499|ref|YP_002958808.1| - 0.018 15.0 0.8 1.4 9.0 0.0 2.8 2 0 0 2 2 2 0 Adenylate kinase, active site lid DZR PF12773.7 gi|240102499|ref|YP_002958808.1| - 0.019 15.0 3.5 0.02 14.9 0.1 2.4 2 0 0 2 2 2 0 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|240102499|ref|YP_002958808.1| - 0.73 9.5 0.0 0.73 9.5 0.0 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|240102499|ref|YP_002958808.1| - 1.7 8.2 10.7 3.3 7.3 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|240102499|ref|YP_002958808.1| - 2 8.5 7.6 6.7 6.8 0.1 2.9 3 1 0 3 3 3 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|240102499|ref|YP_002958808.1| - 3.8 7.4 14.4 0.26 11.1 0.5 3.2 3 0 0 3 3 3 0 zinc-ribbon domain S_layer_N PF05123.12 gi|240102501|ref|YP_002958810.1| - 5.8e-23 82.2 0.3 1.6e-22 80.7 0.1 1.8 2 0 0 2 2 2 1 S-layer like family, N-terminal region S_layer_C PF05124.12 gi|240102501|ref|YP_002958810.1| - 1e-11 45.2 0.1 2.1e-11 44.3 0.1 1.6 1 0 0 1 1 1 1 S-layer like family, C-terminal region BcsB PF03170.13 gi|240102501|ref|YP_002958810.1| - 0.21 9.9 0.0 2.3 6.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial cellulose synthase subunit TBP PF00352.21 gi|240102503|ref|YP_002958812.1| - 9e-59 195.4 0.0 5.5e-29 100.0 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|240102503|ref|YP_002958812.1| - 2.1e-09 37.4 0.0 1.3e-05 25.2 0.0 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF3378) AIRS_C PF02769.22 gi|240102503|ref|YP_002958812.1| - 0.0026 17.9 0.1 0.12 12.5 0.0 2.1 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain DDE_Tnp_1_assoc PF13808.6 gi|240102503|ref|YP_002958812.1| - 0.038 14.0 0.0 0.4 10.7 0.0 2.1 2 0 0 2 2 2 0 DDE_Tnp_1-associated DUF505 PF04458.12 gi|240102504|ref|YP_002958813.1| - 2.1e-154 515.3 22.9 2.2e-80 270.8 5.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF505) AAA_assoc_C PF09821.9 gi|240102504|ref|YP_002958813.1| - 5e-05 23.8 11.2 0.014 15.9 1.0 5.3 4 2 2 6 6 6 2 C-terminal AAA-associated domain HTH_36 PF13730.6 gi|240102504|ref|YP_002958813.1| - 0.0044 16.9 0.0 0.068 13.1 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain SDH_sah PF01972.16 gi|240102505|ref|YP_002958814.1| - 3.7e-153 508.5 0.6 4.1e-153 508.4 0.6 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|240102505|ref|YP_002958814.1| - 3.2e-07 30.4 0.1 9.4e-07 28.9 0.0 1.8 2 0 0 2 2 2 1 Clp protease ECH_1 PF00378.20 gi|240102505|ref|YP_002958814.1| - 0.00044 19.7 0.1 0.0014 18.0 0.1 1.7 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|240102505|ref|YP_002958814.1| - 0.0051 16.8 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 Peptidase family S49 AntA PF08346.12 gi|240102505|ref|YP_002958814.1| - 0.026 15.1 0.0 0.049 14.2 0.0 1.5 1 0 0 1 1 1 0 AntA/AntB antirepressor Calmodulin_bind PF07887.11 gi|240102505|ref|YP_002958814.1| - 0.049 12.9 0.0 0.068 12.5 0.0 1.2 1 0 0 1 1 1 0 Calmodulin binding protein-like DUF356 PF04009.12 gi|240102506|ref|YP_002958815.1| - 4e-35 120.3 0.0 5.6e-35 119.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF356) PIN PF01850.21 gi|240102507|ref|YP_002958816.1| - 2.8e-11 44.0 0.0 3.2e-11 43.8 0.0 1.0 1 0 0 1 1 1 1 PIN domain McrBC PF10117.9 gi|240102509|ref|YP_002958818.1| - 9.7e-56 189.2 0.3 1.3e-55 188.8 0.3 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component PDDEXK_7 PF04411.12 gi|240102509|ref|YP_002958818.1| - 0.0089 16.0 0.2 0.032 14.2 0.0 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily RmuC PF02646.16 gi|240102509|ref|YP_002958818.1| - 0.057 12.6 0.5 1.4 8.0 0.0 2.2 2 0 0 2 2 2 0 RmuC family HSDR_N PF04313.14 gi|240102509|ref|YP_002958818.1| - 0.18 11.7 2.1 0.24 11.3 0.1 2.2 3 0 0 3 3 3 0 Type I restriction enzyme R protein N terminus (HSDR_N) AAA_5 PF07728.14 gi|240102510|ref|YP_002958819.1| - 2.5e-17 63.2 0.0 1.4e-15 57.5 0.0 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|240102510|ref|YP_002958819.1| - 3.4e-05 24.3 0.0 0.002 18.6 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|240102510|ref|YP_002958819.1| - 0.00012 21.6 0.0 0.00021 20.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|240102510|ref|YP_002958819.1| - 0.00019 21.7 0.0 0.00058 20.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|240102510|ref|YP_002958819.1| - 0.0013 18.3 0.0 0.003 17.0 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein AAA_16 PF13191.6 gi|240102510|ref|YP_002958819.1| - 0.0026 18.2 0.0 0.061 13.7 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|240102510|ref|YP_002958819.1| - 0.0027 17.3 0.0 0.0064 16.1 0.0 1.5 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|240102510|ref|YP_002958819.1| - 0.0042 16.8 0.0 0.0084 15.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.6 gi|240102510|ref|YP_002958819.1| - 0.012 15.9 0.0 0.17 12.2 0.0 2.2 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|240102510|ref|YP_002958819.1| - 0.015 14.6 0.0 0.032 13.6 0.0 1.5 1 0 0 1 1 1 0 KaiC AAA_14 PF13173.6 gi|240102510|ref|YP_002958819.1| - 0.022 14.8 0.1 1.2 9.1 0.0 2.7 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|240102510|ref|YP_002958819.1| - 0.024 14.4 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2243 PF10002.9 gi|240102510|ref|YP_002958819.1| - 0.079 13.1 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2243) ResIII PF04851.15 gi|240102510|ref|YP_002958819.1| - 0.087 12.8 1.3 0.14 12.2 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 gi|240102510|ref|YP_002958819.1| - 0.087 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RuvB_N PF05496.12 gi|240102510|ref|YP_002958819.1| - 0.14 11.9 0.0 1.3 8.8 0.0 2.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_11 PF13086.6 gi|240102510|ref|YP_002958819.1| - 0.17 11.7 0.2 0.43 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|240102510|ref|YP_002958819.1| - 0.19 11.1 0.0 0.34 10.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI HTH_3 PF01381.22 gi|240102511|ref|YP_002958820.1| - 4.1e-07 29.9 0.1 7.7e-07 29.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|240102511|ref|YP_002958820.1| - 0.0034 17.4 0.6 0.0073 16.3 0.6 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain DZR PF12773.7 gi|240102511|ref|YP_002958820.1| - 0.011 15.8 0.2 0.017 15.1 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Death PF00531.22 gi|240102511|ref|YP_002958820.1| - 0.079 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Death domain Acetyltransf_1 PF00583.25 gi|240102512|ref|YP_002958821.1| - 1e-20 74.1 1.3 1.3e-20 73.8 1.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|240102512|ref|YP_002958821.1| - 6.6e-16 58.5 0.7 1.1e-15 57.8 0.7 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|240102512|ref|YP_002958821.1| - 1.1e-15 57.7 0.1 1.6e-15 57.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|240102512|ref|YP_002958821.1| - 1.5e-06 28.0 0.0 2.5e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|240102512|ref|YP_002958821.1| - 1.4e-05 25.2 0.2 2e-05 24.7 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|240102512|ref|YP_002958821.1| - 0.00037 20.6 0.0 0.00069 19.7 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|240102512|ref|YP_002958821.1| - 0.0019 18.4 0.1 0.0026 17.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_18 PF18014.1 gi|240102512|ref|YP_002958821.1| - 0.0023 17.7 0.0 0.0088 15.9 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|240102512|ref|YP_002958821.1| - 0.0025 18.5 0.3 0.0033 18.1 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF643 PF04867.12 gi|240102512|ref|YP_002958821.1| - 0.0083 16.7 0.4 0.62 10.7 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF643) PanZ PF12568.8 gi|240102512|ref|YP_002958821.1| - 0.028 14.1 0.5 0.042 13.6 0.1 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ PIN PF01850.21 gi|240102514|ref|YP_002958823.1| - 5.4e-19 68.9 0.2 6.4e-19 68.7 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.6 gi|240102514|ref|YP_002958823.1| - 0.032 14.5 0.3 0.046 14.0 0.3 1.4 1 1 0 1 1 1 0 PIN domain DUF4411 PF14367.6 gi|240102514|ref|YP_002958823.1| - 0.13 12.2 0.1 0.21 11.5 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) OB_aCoA_assoc PF01796.17 gi|240102516|ref|YP_002958825.1| - 3.5e-21 75.0 0.2 4.6e-21 74.6 0.2 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|240102516|ref|YP_002958825.1| - 5.2e-09 35.8 0.7 7.2e-09 35.3 0.7 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) SoxD PF04267.12 gi|240102516|ref|YP_002958825.1| - 0.025 14.7 0.1 0.066 13.3 0.0 1.7 2 0 0 2 2 2 0 Sarcosine oxidase, delta subunit family DUF4075 PF13294.6 gi|240102516|ref|YP_002958825.1| - 0.052 13.7 0.3 0.081 13.1 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4075) Zn_Tnp_IS1595 PF12760.7 gi|240102516|ref|YP_002958825.1| - 0.055 13.4 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-RRN7 PF11781.8 gi|240102516|ref|YP_002958825.1| - 0.081 12.6 0.4 0.19 11.4 0.4 1.6 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|240102516|ref|YP_002958825.1| - 0.11 12.0 0.6 0.25 10.9 0.2 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding TackOD1 PF18551.1 gi|240102516|ref|YP_002958825.1| - 0.18 11.5 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Thiolase_N PF00108.23 gi|240102517|ref|YP_002958826.1| - 3.6e-27 95.4 0.1 8.9e-27 94.1 0.1 1.7 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|240102517|ref|YP_002958826.1| - 3.3e-11 42.9 0.4 1.9e-10 40.4 0.3 2.4 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|240102517|ref|YP_002958826.1| - 0.0001 22.0 6.6 0.0002 21.0 1.8 2.5 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|240102517|ref|YP_002958826.1| - 0.0001 22.3 3.8 0.004 17.2 0.1 3.7 3 1 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|240102517|ref|YP_002958826.1| - 0.066 13.1 0.5 5.8 6.9 0.2 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 gi|240102518|ref|YP_002958827.1| - 6.1e-12 45.5 0.0 1.8e-11 44.1 0.0 1.8 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|240102518|ref|YP_002958827.1| - 9.6e-06 25.4 0.1 0.012 15.3 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|240102518|ref|YP_002958827.1| - 5e-05 23.2 0.0 0.00013 21.9 0.0 1.7 1 1 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.10 gi|240102518|ref|YP_002958827.1| - 5.8e-05 22.9 2.5 0.00028 20.7 0.4 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|240102518|ref|YP_002958827.1| - 0.0019 17.6 0.0 0.0028 17.1 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|240102518|ref|YP_002958827.1| - 0.045 13.3 0.6 3.6 7.1 0.0 2.6 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|240102518|ref|YP_002958827.1| - 0.09 12.4 0.0 0.61 9.7 0.0 2.1 2 0 0 2 2 2 0 Thiolase, C-terminal domain PTCRA PF15028.6 gi|240102518|ref|YP_002958827.1| - 0.17 11.6 1.4 0.31 10.7 0.1 1.9 2 0 0 2 2 2 0 Pre-T-cell antigen receptor AIM24 PF01987.17 gi|240102519|ref|YP_002958828.1| - 1e-64 218.0 0.1 1.2e-64 217.9 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Fibrillarin PF01269.17 gi|240102520|ref|YP_002958829.1| - 7.3e-101 336.0 0.0 8.7e-101 335.8 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|240102520|ref|YP_002958829.1| - 1.2e-06 28.4 0.0 1.5e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|240102520|ref|YP_002958829.1| - 0.00044 20.0 0.0 0.00065 19.4 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.19 gi|240102520|ref|YP_002958829.1| - 0.067 13.3 0.0 0.09 12.9 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase Nop PF01798.18 gi|240102521|ref|YP_002958830.1| - 1.5e-73 247.0 0.0 2.1e-73 246.6 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin HhH-GPD PF00730.25 gi|240102521|ref|YP_002958830.1| - 0.094 13.2 0.0 2 8.9 0.0 2.8 2 1 0 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein SPOUT_MTase_2 PF14419.6 gi|240102522|ref|YP_002958831.1| - 2.2e-83 277.8 0.4 4.2e-83 276.9 0.1 1.6 2 0 0 2 2 2 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|240102522|ref|YP_002958831.1| - 5.8e-29 101.0 1.0 1.8e-28 99.4 0.4 2.0 2 0 0 2 2 2 1 THUMP domain Methyltrn_RNA_4 PF09936.9 gi|240102522|ref|YP_002958831.1| - 0.0016 18.4 0.0 0.021 14.7 0.0 2.1 2 0 0 2 2 2 1 SAM-dependent RNA methyltransferase Spt5-NGN PF03439.13 gi|240102522|ref|YP_002958831.1| - 0.032 14.1 0.1 0.14 12.1 0.1 2.1 1 1 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section DUF92 PF01940.16 gi|240102523|ref|YP_002958832.1| - 7.6e-50 169.5 11.8 1.7e-49 168.4 11.8 1.5 1 1 0 1 1 1 1 Integral membrane protein DUF92 SurA_N_2 PF13623.6 gi|240102523|ref|YP_002958832.1| - 0.24 11.3 2.5 0.49 10.3 0.3 2.2 2 0 0 2 2 2 0 SurA N-terminal domain Claudin_2 PF13903.6 gi|240102523|ref|YP_002958832.1| - 1.2 8.8 8.0 0.099 12.4 1.2 2.2 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction HTH_24 PF13412.6 gi|240102524|ref|YP_002958833.1| - 8.2e-15 54.1 3.6 1.2e-14 53.5 0.9 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|240102524|ref|YP_002958833.1| - 4.1e-14 52.1 1.0 6.3e-14 51.5 1.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|240102524|ref|YP_002958833.1| - 1.6e-08 34.4 0.5 2.7e-08 33.6 0.2 1.5 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|240102524|ref|YP_002958833.1| - 1.6e-07 31.1 0.2 4.3e-07 29.8 0.2 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|240102524|ref|YP_002958833.1| - 1.2e-06 28.2 0.1 0.00042 20.1 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|240102524|ref|YP_002958833.1| - 1.7e-06 28.0 0.0 2.5e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|240102524|ref|YP_002958833.1| - 1.4e-05 25.1 0.5 0.00012 22.2 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|240102524|ref|YP_002958833.1| - 1.7e-05 24.6 0.1 4.4e-05 23.3 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_5 PF01022.20 gi|240102524|ref|YP_002958833.1| - 2.7e-05 23.9 0.1 5e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|240102524|ref|YP_002958833.1| - 3.3e-05 23.8 0.7 9.1e-05 22.3 0.1 2.0 2 0 0 2 2 2 1 HTH domain AsnC_trans_reg PF01037.21 gi|240102524|ref|YP_002958833.1| - 6.6e-05 22.8 0.1 0.00011 22.1 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Crp PF00325.20 gi|240102524|ref|YP_002958833.1| - 0.00014 21.4 0.8 0.00023 20.8 0.8 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family Sigma70_r4 PF04545.16 gi|240102524|ref|YP_002958833.1| - 0.0019 17.7 0.2 0.0041 16.6 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|240102524|ref|YP_002958833.1| - 0.0029 17.4 0.6 0.006 16.3 0.2 1.8 2 0 0 2 2 2 1 Homeodomain-like domain Rrf2 PF02082.20 gi|240102524|ref|YP_002958833.1| - 0.003 17.9 0.3 0.016 15.5 0.1 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_3 PF01381.22 gi|240102524|ref|YP_002958833.1| - 0.0031 17.5 0.1 0.01 15.9 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_Mga PF08280.11 gi|240102524|ref|YP_002958833.1| - 0.0041 17.1 2.0 0.0052 16.8 0.1 2.2 3 0 0 3 3 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.6 gi|240102524|ref|YP_002958833.1| - 0.0056 16.8 0.1 0.0091 16.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF977 PF06163.11 gi|240102524|ref|YP_002958833.1| - 0.0088 16.0 0.1 0.016 15.1 0.1 1.5 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_CodY PF08222.11 gi|240102524|ref|YP_002958833.1| - 0.011 15.3 0.1 0.046 13.3 0.0 2.0 2 0 0 2 2 2 0 CodY helix-turn-helix domain DUF2250 PF10007.9 gi|240102524|ref|YP_002958833.1| - 0.014 15.5 0.7 0.033 14.3 0.2 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.6 gi|240102524|ref|YP_002958833.1| - 0.015 15.2 0.2 0.043 13.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Replic_Relax PF13814.6 gi|240102524|ref|YP_002958833.1| - 0.041 13.9 0.2 0.22 11.5 0.2 1.9 1 1 0 1 1 1 0 Replication-relaxation HTH_IclR PF09339.10 gi|240102524|ref|YP_002958833.1| - 0.042 13.7 0.0 0.094 12.5 0.1 1.5 2 0 0 2 2 1 0 IclR helix-turn-helix domain Phage_CII PF05269.11 gi|240102524|ref|YP_002958833.1| - 0.042 14.1 0.1 0.083 13.1 0.1 1.4 1 0 0 1 1 1 0 Bacteriophage CII protein HxlR PF01638.17 gi|240102524|ref|YP_002958833.1| - 0.048 13.5 0.7 0.13 12.2 0.3 1.8 1 1 1 2 2 2 0 HxlR-like helix-turn-helix KH_5 PF13184.6 gi|240102524|ref|YP_002958833.1| - 0.048 13.7 1.1 0.56 10.3 0.3 2.3 2 1 0 2 2 2 0 NusA-like KH domain HTH_27 PF13463.6 gi|240102524|ref|YP_002958833.1| - 0.062 13.8 1.1 0.28 11.7 0.2 2.3 3 0 0 3 3 3 0 Winged helix DNA-binding domain HTH_19 PF12844.7 gi|240102524|ref|YP_002958833.1| - 0.063 13.3 0.1 0.15 12.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4041 PF13250.6 gi|240102524|ref|YP_002958833.1| - 0.073 13.0 1.5 0.65 9.9 0.0 2.6 2 1 0 3 3 3 0 Domain of unknown function (DUF4041) Phage_rep_O PF04492.13 gi|240102524|ref|YP_002958833.1| - 0.084 13.5 0.0 0.2 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage replication protein O GntR PF00392.21 gi|240102524|ref|YP_002958833.1| - 0.14 11.8 0.1 0.37 10.5 0.1 1.7 2 0 0 2 2 1 0 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|240102524|ref|YP_002958833.1| - 0.26 11.1 3.3 0.39 10.5 0.6 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Lon_C PF05362.13 gi|240102525|ref|YP_002958834.1| - 9e-38 129.9 3.2 1.5e-37 129.1 3.2 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|240102525|ref|YP_002958834.1| - 3.9e-29 101.8 0.0 1.1e-22 80.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|240102525|ref|YP_002958834.1| - 5.2e-18 65.2 0.1 2.5e-09 36.9 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|240102525|ref|YP_002958834.1| - 8.9e-16 58.0 0.0 2.5e-09 37.1 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|240102525|ref|YP_002958834.1| - 4.8e-12 46.1 0.0 0.00013 22.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|240102525|ref|YP_002958834.1| - 1.2e-10 41.2 0.6 2.9e-10 40.0 0.6 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 gi|240102525|ref|YP_002958834.1| - 1.1e-07 32.3 0.1 0.033 14.6 0.0 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|240102525|ref|YP_002958834.1| - 6.7e-07 28.6 0.0 0.04 13.0 0.0 2.5 2 0 0 2 2 2 2 MCM P-loop domain AAA_22 PF13401.6 gi|240102525|ref|YP_002958834.1| - 2.9e-06 27.6 0.0 0.00068 19.9 0.0 2.9 3 0 0 3 3 2 1 AAA domain RuvB_N PF05496.12 gi|240102525|ref|YP_002958834.1| - 3.7e-06 26.8 0.2 0.083 12.6 0.0 2.8 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activ_2 PF14532.6 gi|240102525|ref|YP_002958834.1| - 4.1e-05 23.7 0.0 0.4 10.8 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|240102525|ref|YP_002958834.1| - 5.4e-05 23.1 0.0 0.076 12.9 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|240102525|ref|YP_002958834.1| - 0.0005 19.8 0.0 0.033 13.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain S_4TM PF18159.1 gi|240102525|ref|YP_002958834.1| - 0.00056 19.3 1.7 0.0033 16.8 0.1 2.1 2 0 0 2 2 2 1 SMODS-associating 4TM effector domain AAA_16 PF13191.6 gi|240102525|ref|YP_002958834.1| - 0.00073 20.0 0.0 0.002 18.5 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|240102525|ref|YP_002958834.1| - 0.0011 18.5 0.0 0.0024 17.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|240102525|ref|YP_002958834.1| - 0.0021 18.4 0.4 0.03 14.7 0.4 2.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|240102525|ref|YP_002958834.1| - 0.0061 16.5 0.0 0.017 15.1 0.0 1.8 1 0 0 1 1 1 1 NACHT domain Gpr1_Fun34_YaaH PF01184.19 gi|240102525|ref|YP_002958834.1| - 0.011 15.3 0.8 0.019 14.6 0.8 1.2 1 0 0 1 1 1 0 GPR1/FUN34/yaaH family Parvo_NS1 PF01057.17 gi|240102525|ref|YP_002958834.1| - 0.035 13.2 0.0 0.067 12.3 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF3307 PF11750.8 gi|240102525|ref|YP_002958834.1| - 0.037 14.1 0.2 0.066 13.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3307) MMR_HSR1 PF01926.23 gi|240102525|ref|YP_002958834.1| - 0.037 14.1 0.1 10 6.2 0.1 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_PrkA PF08298.11 gi|240102525|ref|YP_002958834.1| - 0.045 12.7 0.0 0.84 8.5 0.0 2.2 2 0 0 2 2 2 0 PrkA AAA domain AAA_2 PF07724.14 gi|240102525|ref|YP_002958834.1| - 0.051 13.7 0.3 17 5.5 0.0 3.4 3 2 0 3 3 3 0 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|240102525|ref|YP_002958834.1| - 0.083 12.0 0.0 0.29 10.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|240102525|ref|YP_002958834.1| - 0.085 12.6 0.0 0.24 11.1 0.0 1.7 2 0 0 2 2 1 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|240102525|ref|YP_002958834.1| - 0.09 12.1 0.1 0.73 9.1 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_lid_3 PF17862.1 gi|240102525|ref|YP_002958834.1| - 0.091 12.6 0.1 1.4 8.8 0.0 2.5 2 0 0 2 2 2 0 AAA+ lid domain AAA_29 PF13555.6 gi|240102525|ref|YP_002958834.1| - 0.099 12.4 0.0 0.3 10.9 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain PCuAC PF04314.13 gi|240102525|ref|YP_002958834.1| - 0.11 12.3 0.2 0.24 11.2 0.2 1.6 1 0 0 1 1 1 0 Copper chaperone PCu(A)C DUF3173 PF11372.8 gi|240102525|ref|YP_002958834.1| - 0.68 9.9 2.9 6.1 6.8 0.1 3.3 4 0 0 4 4 3 0 Domain of unknown function (DUF3173) Ac81 PF05820.11 gi|240102525|ref|YP_002958834.1| - 2.3 7.7 4.9 4 7.0 4.9 1.3 1 0 0 1 1 1 0 Baculoviridae AC81 DUF2666 PF10869.8 gi|240102526|ref|YP_002958835.1| - 3.7e-56 189.1 0.0 9.3e-40 136.0 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2666) Ribonuc_L-PSP PF01042.21 gi|240102527|ref|YP_002958836.1| - 2e-39 134.3 0.0 2.7e-39 133.9 0.0 1.2 1 0 0 1 1 1 1 Endoribonuclease L-PSP Prok-JAB PF14464.6 gi|240102528|ref|YP_002958837.1| - 7.6e-08 32.1 0.0 1.1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Fe_dep_repr_C PF02742.15 gi|240102529|ref|YP_002958838.1| - 1.9e-22 79.1 0.9 3.7e-22 78.2 0.9 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|240102529|ref|YP_002958838.1| - 1.6e-18 66.6 1.6 3.3e-18 65.6 1.6 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|240102529|ref|YP_002958838.1| - 1.8e-07 30.9 0.0 3.7e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|240102529|ref|YP_002958838.1| - 6.2e-07 29.2 0.0 1.2e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|240102529|ref|YP_002958838.1| - 1.9e-05 24.5 0.3 3e-05 23.8 0.3 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|240102529|ref|YP_002958838.1| - 5.1e-05 23.5 0.1 0.00011 22.5 0.1 1.5 2 0 0 2 2 1 1 Transcriptional regulator GntR PF00392.21 gi|240102529|ref|YP_002958838.1| - 0.00017 21.2 0.0 0.00035 20.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family IF2_N PF04760.15 gi|240102529|ref|YP_002958838.1| - 0.00034 20.4 0.0 0.00074 19.3 0.0 1.6 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region HTH_Crp_2 PF13545.6 gi|240102529|ref|YP_002958838.1| - 0.00035 20.5 0.0 0.00075 19.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|240102529|ref|YP_002958838.1| - 0.00069 19.1 0.0 0.0018 17.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|240102529|ref|YP_002958838.1| - 0.0012 18.8 0.1 0.0025 17.7 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|240102529|ref|YP_002958838.1| - 0.0021 18.5 0.1 0.0036 17.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|240102529|ref|YP_002958838.1| - 0.0041 16.9 0.0 0.017 14.8 0.0 2.1 2 0 0 2 2 2 1 LexA DNA binding domain DUF505 PF04458.12 gi|240102529|ref|YP_002958838.1| - 0.0046 15.4 0.1 0.0059 15.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_5 PF01022.20 gi|240102529|ref|YP_002958838.1| - 0.0095 15.8 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.9 gi|240102529|ref|YP_002958838.1| - 0.01 15.9 0.8 0.018 15.1 0.8 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_micro PF17007.5 gi|240102529|ref|YP_002958838.1| - 0.011 14.6 0.7 0.015 14.1 0.7 1.2 1 0 0 1 1 1 0 HTH-like Mnd1 PF03962.15 gi|240102529|ref|YP_002958838.1| - 0.013 15.8 2.7 0.14 12.5 0.1 2.2 2 0 0 2 2 2 0 Mnd1 HTH domain HTH_29 PF13551.6 gi|240102529|ref|YP_002958838.1| - 0.014 15.4 0.0 0.03 14.3 0.0 1.7 2 0 0 2 2 1 0 Winged helix-turn helix HTH_40 PF14493.6 gi|240102529|ref|YP_002958838.1| - 0.017 15.5 0.3 0.14 12.6 0.3 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain DDRGK PF09756.9 gi|240102529|ref|YP_002958838.1| - 0.023 14.3 1.3 0.098 12.2 0.0 2.3 1 1 1 2 2 2 0 DDRGK domain TFIIE_alpha PF02002.17 gi|240102529|ref|YP_002958838.1| - 0.026 14.4 0.8 0.06 13.2 0.3 1.8 2 0 0 2 2 2 0 TFIIE alpha subunit HrcA_DNA-bdg PF03444.15 gi|240102529|ref|YP_002958838.1| - 0.046 13.4 0.1 0.078 12.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_11 PF08279.12 gi|240102529|ref|YP_002958838.1| - 0.053 13.5 0.1 0.098 12.6 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_47 PF16221.5 gi|240102529|ref|YP_002958838.1| - 0.054 13.0 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 winged helix-turn-helix B-block_TFIIIC PF04182.12 gi|240102529|ref|YP_002958838.1| - 0.077 13.2 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_23 PF13384.6 gi|240102529|ref|YP_002958838.1| - 0.12 12.2 0.0 0.98 9.3 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain Mrr_N PF14338.6 gi|240102529|ref|YP_002958838.1| - 0.13 12.4 0.1 0.45 10.7 0.0 1.9 2 0 0 2 2 2 0 Mrr N-terminal domain Xan_ur_permease PF00860.20 gi|240102530|ref|YP_002958839.1| - 2.2e-42 145.2 41.2 2.9e-42 144.8 41.2 1.1 1 0 0 1 1 1 1 Permease family Sulfate_transp PF00916.20 gi|240102530|ref|YP_002958839.1| - 6.2e-05 21.9 26.7 9.9e-05 21.2 26.7 1.3 1 0 0 1 1 1 1 Sulfate permease family DUF5464 PF17552.2 gi|240102530|ref|YP_002958839.1| - 0.53 10.6 8.2 0.18 12.1 0.4 3.4 2 1 0 2 2 2 0 Family of unknown function (DUF5464) Per1 PF04080.13 gi|240102530|ref|YP_002958839.1| - 7.5 6.2 7.3 22 4.7 0.4 2.6 2 1 0 2 2 2 0 Per1-like family Gar1 PF04410.14 gi|240102531|ref|YP_002958840.1| - 2.7e-08 33.7 0.0 3.3e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|240102532|ref|YP_002958841.1| - 5.3e-41 138.5 4.5 1.2e-19 70.1 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|240102532|ref|YP_002958841.1| - 4.9e-18 64.4 3.8 5.3e-18 64.2 2.7 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|240102532|ref|YP_002958841.1| - 4.9e-05 22.8 2.0 0.0014 18.1 0.2 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 Zn_Tnp_IS1595 PF12760.7 gi|240102532|ref|YP_002958841.1| - 0.00048 20.0 0.8 0.0011 18.9 0.8 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Cyclin_N PF00134.23 gi|240102532|ref|YP_002958841.1| - 0.0022 17.8 0.1 0.042 13.6 0.1 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain Prim_Zn_Ribbon PF08273.12 gi|240102532|ref|YP_002958841.1| - 0.0023 18.2 1.0 0.0049 17.1 1.0 1.5 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase Cyclin_C PF02984.19 gi|240102532|ref|YP_002958841.1| - 0.0064 16.6 0.0 0.26 11.4 0.0 2.3 2 0 0 2 2 2 1 Cyclin, C-terminal domain HARE-HTH PF05066.13 gi|240102532|ref|YP_002958841.1| - 0.0096 16.3 0.2 0.33 11.4 0.1 2.4 2 0 0 2 2 2 1 HB1, ASXL, restriction endonuclease HTH domain A2L_zn_ribbon PF08792.10 gi|240102532|ref|YP_002958841.1| - 0.011 15.5 0.2 0.022 14.5 0.2 1.5 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-RRN7 PF11781.8 gi|240102532|ref|YP_002958841.1| - 0.019 14.6 2.3 0.049 13.3 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Sigma70_r4_2 PF08281.12 gi|240102532|ref|YP_002958841.1| - 0.02 14.6 0.4 0.12 12.0 0.1 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|240102532|ref|YP_002958841.1| - 0.022 14.6 0.4 0.13 12.2 0.1 2.5 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain GerE PF00196.19 gi|240102532|ref|YP_002958841.1| - 0.034 13.7 1.0 0.14 11.7 0.2 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family UPF0253 PF06786.12 gi|240102532|ref|YP_002958841.1| - 0.036 14.3 0.4 0.26 11.6 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Ribosomal_S27e PF01667.17 gi|240102532|ref|YP_002958841.1| - 0.041 13.6 0.5 0.075 12.7 0.5 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 HTH_23 PF13384.6 gi|240102532|ref|YP_002958841.1| - 0.049 13.5 0.0 0.43 10.4 0.1 2.7 2 0 0 2 2 2 0 Homeodomain-like domain FYDLN_acid PF09538.10 gi|240102532|ref|YP_002958841.1| - 0.064 13.9 0.0 0.13 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) DUF2318 PF10080.9 gi|240102532|ref|YP_002958841.1| - 0.069 13.3 0.2 0.13 12.4 0.2 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) OrfB_Zn_ribbon PF07282.11 gi|240102532|ref|YP_002958841.1| - 0.15 12.0 0.4 0.32 10.9 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.20 gi|240102532|ref|YP_002958841.1| - 0.24 11.5 0.6 6.7 6.8 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin zf-C2H2_12 PF18658.1 gi|240102532|ref|YP_002958841.1| - 0.53 9.9 1.9 1 9.0 0.1 2.2 1 1 1 2 2 2 0 Zinc-finger C2H2-type Metallophos_2 PF12850.7 gi|240102533|ref|YP_002958842.1| - 1.6e-30 106.4 0.0 1.9e-30 106.3 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|240102533|ref|YP_002958842.1| - 7.5e-10 39.7 0.2 7.9e-07 29.8 0.0 2.3 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase CBFD_NFYB_HMF PF00808.23 gi|240102534|ref|YP_002958843.1| - 9.3e-21 73.9 3.8 1e-20 73.8 3.8 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|240102534|ref|YP_002958843.1| - 9.4e-10 39.0 0.7 1e-09 38.8 0.7 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 gi|240102534|ref|YP_002958843.1| - 3.9e-08 33.4 0.8 4.1e-08 33.3 0.8 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|240102534|ref|YP_002958843.1| - 4.2e-06 27.1 0.1 4.6e-06 26.9 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein CENP-T_C PF15511.6 gi|240102534|ref|YP_002958843.1| - 2.1e-05 24.6 0.2 2.2e-05 24.5 0.2 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID-18kDa PF02269.16 gi|240102534|ref|YP_002958843.1| - 4.9e-05 23.3 0.1 5.4e-05 23.2 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit TFIID-31kDa PF02291.15 gi|240102534|ref|YP_002958843.1| - 8.1e-05 22.7 0.1 8.9e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit DUF1931 PF09123.11 gi|240102534|ref|YP_002958843.1| - 0.0018 18.4 0.8 0.0021 18.2 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) TFIID_20kDa PF03847.13 gi|240102534|ref|YP_002958843.1| - 0.02 15.4 0.2 0.022 15.2 0.2 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A Bromo_TP PF07524.13 gi|240102534|ref|YP_002958843.1| - 0.13 12.3 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated Class_IIIsignal PF04021.12 gi|240102535|ref|YP_002958844.1| - 5e-06 26.3 1.6 6.1e-06 26.0 1.6 1.2 1 0 0 1 1 1 1 Class III signal peptide Flp1_like PF16982.5 gi|240102535|ref|YP_002958844.1| - 0.012 15.0 0.0 0.014 14.8 0.0 1.1 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain DUF4736 PF15883.5 gi|240102535|ref|YP_002958844.1| - 0.039 13.7 0.2 0.042 13.6 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4736) DUF423 PF04241.15 gi|240102535|ref|YP_002958844.1| - 0.053 13.7 0.1 0.056 13.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF423) DUF3290 PF11694.8 gi|240102535|ref|YP_002958844.1| - 0.069 13.1 0.4 0.088 12.8 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) MOLO1 PF17175.4 gi|240102535|ref|YP_002958844.1| - 0.079 13.1 0.1 0.085 13.0 0.1 1.1 1 0 0 1 1 1 0 Modulator of levamisole receptor-1 SPC22 PF04573.12 gi|240102535|ref|YP_002958844.1| - 0.084 12.4 0.2 0.089 12.3 0.2 1.0 1 0 0 1 1 1 0 Signal peptidase subunit AGP PF06376.12 gi|240102535|ref|YP_002958844.1| - 0.52 10.2 7.6 0.65 9.9 3.4 2.2 1 1 1 2 2 2 0 Arabinogalactan peptide PIN_5 PF08745.11 gi|240102536|ref|YP_002958845.1| - 2.1e-67 226.6 0.6 2.4e-67 226.3 0.6 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease BofC_C PF08955.10 gi|240102536|ref|YP_002958845.1| - 0.033 14.2 0.2 7.1 6.8 0.1 3.2 2 1 1 3 3 3 0 BofC C-terminal domain Peripla_BP_2 PF01497.18 gi|240102537|ref|YP_002958846.1| - 2.3e-74 250.0 0.1 8e-38 130.3 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein Perilipin PF03036.16 gi|240102537|ref|YP_002958846.1| - 0.015 14.4 0.1 4.6 6.2 0.0 2.3 2 0 0 2 2 2 0 Perilipin family Mucin PF01456.17 gi|240102537|ref|YP_002958846.1| - 0.02 14.9 19.6 0.038 14.0 19.6 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein SSP160 PF06933.11 gi|240102537|ref|YP_002958846.1| - 0.045 12.0 19.4 0.066 11.4 19.4 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 T2SSM_b PF10741.9 gi|240102537|ref|YP_002958846.1| - 0.053 13.3 0.3 9.9 6.0 0.0 2.5 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M subtype b DUF4834 PF16118.5 gi|240102537|ref|YP_002958846.1| - 0.16 13.0 0.1 0.34 11.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) PhoU PF01895.19 gi|240102538|ref|YP_002958847.1| - 1.3e-13 51.2 6.9 1e-11 45.1 1.3 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|240102538|ref|YP_002958847.1| - 4.3e-07 29.7 1.8 1.7e-06 27.8 0.1 2.8 3 0 0 3 3 3 1 Antidote-toxin recognition MazE, bacterial antitoxin tRNA_deacylase PF04414.12 gi|240102539|ref|YP_002958848.1| - 1.2e-68 230.7 0.1 1.4e-68 230.4 0.1 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Tubulin PF00091.25 gi|240102540|ref|YP_002958849.1| - 1.1e-47 162.9 0.4 2.3e-47 161.8 0.4 1.6 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|240102540|ref|YP_002958849.1| - 3e-32 110.8 2.7 7.2e-32 109.6 1.1 2.4 2 0 0 2 2 2 1 FtsZ family, C-terminal domain DUF4147 PF13660.6 gi|240102540|ref|YP_002958849.1| - 0.0096 15.5 4.6 0.19 11.3 0.5 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF4147) AlaDh_PNT_C PF01262.21 gi|240102540|ref|YP_002958849.1| - 0.01 15.2 3.0 0.021 14.1 3.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|240102540|ref|YP_002958849.1| - 0.014 14.8 0.0 0.043 13.2 0.0 1.7 2 0 0 2 2 2 0 ThiF family DUF3236 PF11576.8 gi|240102540|ref|YP_002958849.1| - 0.017 14.8 0.3 0.017 14.8 0.3 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3236) NAD_binding_10 PF13460.6 gi|240102540|ref|YP_002958849.1| - 0.027 14.4 0.7 0.074 12.9 0.0 2.0 2 0 0 2 2 2 0 NAD(P)H-binding NAD_binding_7 PF13241.6 gi|240102540|ref|YP_002958849.1| - 0.056 13.9 0.3 0.21 12.1 0.3 2.1 1 1 0 1 1 1 0 Putative NAD(P)-binding GCH_III PF05165.12 gi|240102540|ref|YP_002958849.1| - 0.13 11.5 2.9 0.79 8.9 0.7 2.4 2 1 0 2 2 2 0 GTP cyclohydrolase III Tubulin_2 PF13809.6 gi|240102540|ref|YP_002958849.1| - 0.51 9.5 7.6 0.55 9.4 1.5 2.4 1 1 0 2 2 2 0 Tubulin like SecE PF00584.20 gi|240102541|ref|YP_002958850.1| - 1.2e-06 28.4 0.1 1.4e-06 28.1 0.1 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|240102542|ref|YP_002958851.1| - 8.9e-25 86.4 0.1 1.6e-24 85.6 0.1 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|240102542|ref|YP_002958851.1| - 2.7e-09 36.6 0.6 2.7e-09 36.6 0.6 2.2 3 0 0 3 3 3 1 KOW motif Glyco_hydro_65C PF03633.15 gi|240102542|ref|YP_002958851.1| - 0.11 12.4 2.1 2.7 8.0 0.5 2.3 2 0 0 2 2 2 0 Glycosyl hydrolase family 65, C-terminal domain Ribosomal_L11_N PF03946.14 gi|240102543|ref|YP_002958852.1| - 1.9e-24 85.2 1.3 4.2e-24 84.1 1.3 1.6 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|240102543|ref|YP_002958852.1| - 1.1e-22 80.3 1.5 2e-22 79.4 1.5 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Poly_export PF02563.16 gi|240102543|ref|YP_002958852.1| - 0.024 14.8 0.0 3.6 7.9 0.0 2.5 2 0 0 2 2 2 0 Polysaccharide biosynthesis/export protein Ribosomal_L1 PF00687.21 gi|240102544|ref|YP_002958853.1| - 9.1e-49 166.0 0.2 1.1e-48 165.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family GyrB_insert PF18053.1 gi|240102544|ref|YP_002958853.1| - 0.0017 18.3 0.3 1.3 8.9 0.1 2.3 2 0 0 2 2 2 2 DNA gyrase B subunit insert domain FAM91_C PF14648.6 gi|240102544|ref|YP_002958853.1| - 0.018 13.9 0.0 0.033 13.0 0.0 1.4 1 0 0 1 1 1 0 FAM91 C-terminus RL10P_insert PF17777.1 gi|240102545|ref|YP_002958854.1| - 8.7e-24 83.3 0.2 1.7e-23 82.4 0.2 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|240102545|ref|YP_002958854.1| - 5.8e-22 77.7 0.1 1.2e-21 76.7 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.19 gi|240102545|ref|YP_002958854.1| - 1e-06 29.2 15.2 1e-06 29.2 15.2 3.5 4 1 0 4 4 4 1 60s Acidic ribosomal protein PriA_C PF18074.1 gi|240102545|ref|YP_002958854.1| - 0.18 12.6 1.7 0.28 12.0 0.1 2.1 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain 7TMR-HDED PF07697.11 gi|240102545|ref|YP_002958854.1| - 2.1 8.4 9.1 0.4 10.8 0.2 2.6 2 1 0 2 2 2 0 7TM-HD extracellular Ribosomal_60s PF00428.19 gi|240102546|ref|YP_002958855.1| - 2.2e-19 69.8 18.6 2.6e-19 69.6 18.6 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|240102546|ref|YP_002958855.1| - 3.9e-05 23.8 1.0 5.4e-05 23.3 1.0 1.3 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain DUF2226 PF09987.9 gi|240102546|ref|YP_002958855.1| - 0.11 11.9 4.6 0.12 11.6 4.6 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2226) dUTPase PF00692.19 gi|240102547|ref|YP_002958856.1| - 2.9e-16 59.3 0.0 2.4e-14 53.1 0.0 2.0 1 1 1 2 2 2 2 dUTPase DCD PF06559.11 gi|240102547|ref|YP_002958856.1| - 7.4e-05 21.7 0.0 0.24 10.1 0.0 2.4 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) TrmB PF01978.19 gi|240102548|ref|YP_002958857.1| - 0.014 15.3 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|240102548|ref|YP_002958857.1| - 0.016 15.6 0.0 0.018 15.4 0.0 1.0 1 0 0 1 1 1 0 Penicillinase repressor HTH_Crp_2 PF13545.6 gi|240102548|ref|YP_002958857.1| - 0.036 14.0 0.6 0.06 13.3 0.5 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Phage_coat PF09063.10 gi|240102548|ref|YP_002958857.1| - 0.048 13.7 0.0 0.058 13.4 0.0 1.1 1 0 0 1 1 1 0 Phage PP7 coat protein MarR_2 PF12802.7 gi|240102548|ref|YP_002958857.1| - 0.11 12.4 0.5 0.26 11.2 0.5 1.7 1 1 0 1 1 1 0 MarR family Takusan PF04822.13 gi|240102549|ref|YP_002958858.1| - 0.021 14.7 0.1 0.032 14.1 0.1 1.3 1 0 0 1 1 1 0 Takusan DUF3099 PF11298.8 gi|240102549|ref|YP_002958858.1| - 0.51 10.5 0.0 0.51 10.5 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3099) DUF1102 PF06510.11 gi|240102550|ref|YP_002958859.1| - 8.5e-57 191.3 1.8 9.9e-57 191.1 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) DUF1102 PF06510.11 gi|240102551|ref|YP_002958860.1| - 2.5e-52 176.8 0.9 2.9e-52 176.6 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) Peptidase_S24 PF00717.23 gi|240102552|ref|YP_002958861.1| - 1.3e-11 44.2 0.1 4.4e-11 42.6 0.0 1.9 2 0 0 2 2 2 1 Peptidase S24-like UbiA PF01040.18 gi|240102552|ref|YP_002958861.1| - 1.1 8.5 10.5 0.094 12.0 1.1 2.8 3 1 0 3 3 3 0 UbiA prenyltransferase family Bactofilin PF04519.13 gi|240102553|ref|YP_002958862.1| - 0.065 13.5 0.0 0.59 10.5 0.0 2.5 3 0 0 3 3 3 0 Polymer-forming cytoskeletal OapA PF04225.12 gi|240102553|ref|YP_002958862.1| - 0.12 12.5 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Opacity-associated protein A LysM-like domain DUF5305 PF17231.2 gi|240102554|ref|YP_002958863.1| - 1.8e-06 27.5 0.2 4.2e-06 26.3 0.2 1.6 1 1 0 1 1 1 1 Family of unknown function (DUF5305) APC_r PF05923.12 gi|240102554|ref|YP_002958863.1| - 0.041 13.6 0.1 0.14 11.9 0.1 2.0 1 0 0 1 1 1 0 APC repeat Pyrophosphatase PF00719.19 gi|240102555|ref|YP_002958864.1| - 3.8e-58 195.8 0.2 4.4e-58 195.6 0.2 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase SHS2_Rpb7-N PF03876.17 gi|240102556|ref|YP_002958865.1| - 2.6e-18 66.1 0.2 4.5e-18 65.4 0.2 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|240102556|ref|YP_002958865.1| - 2.4e-16 59.8 1.0 2.4e-16 59.8 1.0 1.8 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|240102556|ref|YP_002958865.1| - 0.00029 21.1 0.2 0.00085 19.6 0.2 1.7 1 1 0 1 1 1 1 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|240102557|ref|YP_002958866.1| - 3.1e-17 62.4 0.0 3.7e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|240102557|ref|YP_002958866.1| - 0.00054 19.5 3.0 0.00075 19.0 3.0 1.2 1 0 0 1 1 1 1 RecR protein PHF5 PF03660.14 gi|240102557|ref|YP_002958866.1| - 0.017 15.3 0.1 0.017 15.3 0.1 1.1 1 0 0 1 1 1 0 PHF5-like protein Rad50_zn_hook PF04423.14 gi|240102557|ref|YP_002958866.1| - 0.032 14.1 0.2 0.21 11.5 0.2 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif PolC_DP2 PF03833.13 gi|240102557|ref|YP_002958866.1| - 0.038 11.8 0.1 0.038 11.8 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.6 gi|240102557|ref|YP_002958866.1| - 0.049 13.1 2.1 0.31 10.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain NRDD PF13597.6 gi|240102557|ref|YP_002958866.1| - 0.067 12.0 0.8 0.074 11.8 0.8 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-RRN7 PF11781.8 gi|240102557|ref|YP_002958866.1| - 0.071 12.8 0.1 0.071 12.8 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HypA PF01155.19 gi|240102557|ref|YP_002958866.1| - 0.15 12.1 1.8 0.2 11.7 1.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prim_Zn_Ribbon PF08273.12 gi|240102557|ref|YP_002958866.1| - 0.22 11.8 0.9 0.22 11.8 0.9 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF35_N PF12172.8 gi|240102557|ref|YP_002958866.1| - 0.38 10.7 6.7 0.87 9.5 6.8 1.5 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF359 PF04019.12 gi|240102558|ref|YP_002958867.1| - 2.3e-38 130.7 0.0 2.8e-38 130.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF3903 PF13043.6 gi|240102558|ref|YP_002958867.1| - 0.16 11.7 0.2 0.34 10.7 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3903) Ribosomal_S24e PF01282.19 gi|240102559|ref|YP_002958868.1| - 8e-26 89.8 0.0 1.1e-25 89.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|240102560|ref|YP_002958869.1| - 2.7e-22 78.7 2.8 3.3e-22 78.4 2.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a GFA PF04828.14 gi|240102560|ref|YP_002958869.1| - 0.0033 17.7 1.6 0.022 15.1 0.1 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37e PF01907.19 gi|240102560|ref|YP_002958869.1| - 0.004 17.3 2.6 0.004 17.3 2.6 1.6 2 0 0 2 2 2 1 Ribosomal protein L37e RNA_POL_M_15KD PF02150.16 gi|240102560|ref|YP_002958869.1| - 0.0071 16.2 2.6 0.019 14.8 2.6 1.7 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|240102560|ref|YP_002958869.1| - 0.033 13.9 0.4 0.033 13.9 0.4 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|240102560|ref|YP_002958869.1| - 0.054 13.5 5.3 0.074 13.0 5.0 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DZR PF12773.7 gi|240102560|ref|YP_002958869.1| - 0.068 13.2 2.5 0.22 11.6 2.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|240102560|ref|YP_002958869.1| - 0.077 12.7 0.4 0.077 12.7 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|240102560|ref|YP_002958869.1| - 0.079 12.9 2.5 0.11 12.5 2.5 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain MqsA_antitoxin PF15731.5 gi|240102560|ref|YP_002958869.1| - 0.081 13.0 0.1 0.096 12.8 0.1 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Nudix_N_2 PF14803.6 gi|240102560|ref|YP_002958869.1| - 0.094 12.7 6.4 0.55 10.2 6.4 2.0 1 1 0 1 1 1 0 Nudix N-terminal zf_UBZ PF18439.1 gi|240102560|ref|YP_002958869.1| - 0.34 10.5 2.9 5.1 6.8 0.2 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger MTS PF05175.14 gi|240102561|ref|YP_002958870.1| - 4.7e-20 71.8 0.0 3.7e-19 68.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|240102561|ref|YP_002958870.1| - 4.9e-17 62.1 0.0 6.6e-17 61.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|240102561|ref|YP_002958870.1| - 1.4e-11 44.4 0.0 2.5e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|240102561|ref|YP_002958870.1| - 1.9e-11 44.5 0.0 7.5e-11 42.6 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240102561|ref|YP_002958870.1| - 6.4e-09 36.3 0.0 1.1e-08 35.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|240102561|ref|YP_002958870.1| - 7.3e-08 32.4 0.0 1.8e-07 31.1 0.0 1.6 2 0 0 2 2 2 1 Met-10+ like-protein PCMT PF01135.19 gi|240102561|ref|YP_002958870.1| - 2.4e-07 30.7 0.0 3e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|240102561|ref|YP_002958870.1| - 4.6e-07 29.8 0.0 1.5e-06 28.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|240102561|ref|YP_002958870.1| - 7.7e-07 29.2 0.0 1.5e-06 28.2 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|240102561|ref|YP_002958870.1| - 7e-06 26.7 0.0 1.8e-05 25.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|240102561|ref|YP_002958870.1| - 0.00013 21.4 0.0 0.00035 19.9 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|240102561|ref|YP_002958870.1| - 0.00024 20.5 0.0 0.0004 19.8 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|240102561|ref|YP_002958870.1| - 0.00026 20.6 0.0 0.00074 19.1 0.0 1.7 1 1 1 2 2 2 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|240102561|ref|YP_002958870.1| - 0.0013 18.4 0.0 0.0027 17.4 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 TRM PF02005.16 gi|240102561|ref|YP_002958870.1| - 0.0013 17.9 0.0 0.0016 17.7 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase N6_Mtase PF02384.16 gi|240102561|ref|YP_002958870.1| - 0.0032 16.8 0.0 0.0043 16.4 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Cons_hypoth95 PF03602.15 gi|240102561|ref|YP_002958870.1| - 0.0046 16.6 0.0 0.0089 15.7 0.0 1.4 2 0 0 2 2 2 1 Conserved hypothetical protein 95 NodS PF05401.11 gi|240102561|ref|YP_002958870.1| - 0.0059 16.2 0.0 0.0099 15.5 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.17 gi|240102561|ref|YP_002958870.1| - 0.0089 15.5 0.0 0.041 13.3 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase AviRa PF11599.8 gi|240102561|ref|YP_002958870.1| - 0.02 14.4 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa rRNA_methylase PF06962.12 gi|240102561|ref|YP_002958870.1| - 0.039 13.9 0.0 0.062 13.3 0.0 1.5 1 1 0 1 1 1 0 Putative rRNA methylase DUF2431 PF10354.9 gi|240102561|ref|YP_002958870.1| - 0.041 14.2 0.0 0.046 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) Methyltransf_32 PF13679.6 gi|240102561|ref|YP_002958870.1| - 0.069 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|240102561|ref|YP_002958870.1| - 0.1 11.6 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DOT1 PF08123.13 gi|240102561|ref|YP_002958870.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.4 1 1 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_24 PF13578.6 gi|240102561|ref|YP_002958870.1| - 0.15 13.1 0.0 0.24 12.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.10 gi|240102561|ref|YP_002958870.1| - 0.17 11.6 0.0 0.38 10.4 0.0 1.6 2 0 0 2 2 2 0 tRNA methyltransferase complex GCD14 subunit TPMT PF05724.11 gi|240102561|ref|YP_002958870.1| - 0.22 11.1 0.0 0.31 10.7 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) UPF0128 PF03673.13 gi|240102562|ref|YP_002958871.1| - 3.3e-106 353.7 0.8 3.7e-106 353.6 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0128) DUF835 PF05763.12 gi|240102563|ref|YP_002958872.1| - 3.2e-29 101.4 0.0 7.5e-29 100.2 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF835) DUF2721 PF11026.8 gi|240102563|ref|YP_002958872.1| - 3.4 7.6 18.1 0.034 14.0 7.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) DUF371 PF04027.13 gi|240102564|ref|YP_002958873.1| - 2.2e-50 170.1 0.0 2.5e-50 169.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) TK PF00265.18 gi|240102565|ref|YP_002958874.1| - 1.7e-51 174.6 0.0 2e-51 174.4 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_14 PF13173.6 gi|240102565|ref|YP_002958874.1| - 0.00048 20.2 0.0 0.0013 18.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain NfeD PF01957.18 gi|240102566|ref|YP_002958875.1| - 6.7e-15 55.2 1.5 6.7e-15 55.2 1.5 1.7 2 1 0 2 2 2 1 NfeD-like C-terminal, partner-binding SNARE_assoc PF09335.11 gi|240102566|ref|YP_002958875.1| - 0.0044 17.5 1.3 0.0046 17.4 0.4 1.5 1 1 0 1 1 1 1 SNARE associated Golgi protein DUF2754 PF10953.8 gi|240102566|ref|YP_002958875.1| - 0.0061 16.8 0.8 0.0061 16.8 0.8 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2754) Polysacc_synt_3 PF13440.6 gi|240102566|ref|YP_002958875.1| - 0.0087 15.3 1.7 0.011 14.9 1.7 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Intein_splicing PF14890.6 gi|240102566|ref|YP_002958875.1| - 0.015 15.2 0.1 0.017 15.0 0.1 1.1 1 0 0 1 1 1 0 Intein splicing domain UNC-50 PF05216.13 gi|240102566|ref|YP_002958875.1| - 0.046 13.3 0.3 0.067 12.7 0.3 1.3 1 0 0 1 1 1 0 UNC-50 family DUF2512 PF10710.9 gi|240102566|ref|YP_002958875.1| - 0.19 11.4 5.9 0.093 12.4 4.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2512) Ribosomal_L9_N PF01281.19 gi|240102566|ref|YP_002958875.1| - 0.39 10.3 2.6 18 5.0 0.1 2.9 3 0 0 3 3 3 0 Ribosomal protein L9, N-terminal domain MS_channel PF00924.18 gi|240102566|ref|YP_002958875.1| - 0.43 10.1 7.4 1.6 8.3 4.0 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel 7TM_GPCR_Srh PF10318.9 gi|240102566|ref|YP_002958875.1| - 1.2 8.1 9.3 1.5 7.8 9.3 1.0 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srh FAM70 PF14967.6 gi|240102566|ref|YP_002958875.1| - 5.6 6.3 4.9 6.6 6.1 4.9 1.1 1 0 0 1 1 1 0 FAM70 protein Band_7 PF01145.25 gi|240102567|ref|YP_002958876.1| - 3.6e-42 144.4 3.6 5.7e-42 143.7 3.6 1.4 1 1 0 1 1 1 1 SPFH domain / Band 7 family Flot PF15975.5 gi|240102567|ref|YP_002958876.1| - 0.014 15.6 5.1 0.014 15.6 5.1 2.1 1 1 1 2 2 2 0 Flotillin Band_7_1 PF13421.6 gi|240102567|ref|YP_002958876.1| - 0.019 14.7 0.1 0.031 14.0 0.1 1.3 1 0 0 1 1 1 0 SPFH domain-Band 7 family LSR PF05624.14 gi|240102567|ref|YP_002958876.1| - 1.4 8.9 3.5 2.5 8.2 3.5 1.4 1 0 0 1 1 1 0 Lipolysis stimulated receptor (LSR) PQQ_2 PF13360.6 gi|240102568|ref|YP_002958877.1| - 0.00039 20.1 0.1 0.0018 17.9 0.1 2.0 1 1 0 1 1 1 1 PQQ-like domain PQQ_3 PF13570.6 gi|240102568|ref|YP_002958877.1| - 5.7 7.6 13.6 11 6.6 1.0 5.0 5 0 0 5 5 5 0 PQQ-like domain PAPS_reduct PF01507.19 gi|240102569|ref|YP_002958878.1| - 4.9e-45 153.7 0.0 2e-44 151.7 0.0 2.1 3 0 0 3 3 2 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|240102569|ref|YP_002958878.1| - 8.1e-15 54.5 1.8 1e-14 54.2 0.3 1.9 2 0 0 2 2 2 1 PUA domain Fer4 PF00037.27 gi|240102569|ref|YP_002958878.1| - 8.5e-10 38.0 14.5 5.2e-05 22.9 2.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102569|ref|YP_002958878.1| - 3.3e-09 37.2 11.4 9.7e-09 35.7 11.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240102569|ref|YP_002958878.1| - 2.5e-08 34.0 10.1 6.4e-08 32.6 10.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102569|ref|YP_002958878.1| - 5.5e-07 29.6 24.5 3e-05 24.0 13.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|240102569|ref|YP_002958878.1| - 4.5e-06 26.7 9.9 4.5e-06 26.7 9.9 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240102569|ref|YP_002958878.1| - 1.5e-05 25.8 9.6 0.043 14.7 0.8 3.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|240102569|ref|YP_002958878.1| - 1.6e-05 24.8 15.0 0.00025 21.0 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240102569|ref|YP_002958878.1| - 2.5e-05 24.7 11.7 0.017 15.7 1.0 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|240102569|ref|YP_002958878.1| - 6.9e-05 23.2 11.2 0.024 15.1 1.3 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102569|ref|YP_002958878.1| - 0.00012 22.0 16.6 0.0011 18.9 2.5 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|240102569|ref|YP_002958878.1| - 0.011 16.4 8.8 0.36 11.6 1.0 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|240102569|ref|YP_002958878.1| - 0.013 15.9 1.9 0.013 15.9 1.9 3.1 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|240102569|ref|YP_002958878.1| - 0.026 15.5 4.1 0.026 15.5 4.1 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|240102569|ref|YP_002958878.1| - 0.042 14.7 5.9 0.24 12.3 0.4 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|240102569|ref|YP_002958878.1| - 0.34 11.1 10.1 2.9 8.1 2.1 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|240102569|ref|YP_002958878.1| - 1.2 9.8 12.0 5.3 7.7 3.0 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I AAA_14 PF13173.6 gi|240102570|ref|YP_002958879.1| - 3.8e-33 114.3 0.0 6.8e-33 113.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|240102570|ref|YP_002958879.1| - 2.6e-12 47.0 0.0 4.3e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|240102570|ref|YP_002958879.1| - 0.0024 17.8 0.1 0.043 13.7 0.0 2.5 1 1 0 2 2 2 1 ATPase domain predominantly from Archaea eIF-5_eIF-2B PF01873.17 gi|240102571|ref|YP_002958880.1| - 4.1e-05 23.4 1.8 5.3e-05 23.1 0.7 1.7 2 0 0 2 2 2 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.12 gi|240102571|ref|YP_002958880.1| - 0.00017 21.0 1.5 0.00042 19.8 1.5 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|240102571|ref|YP_002958880.1| - 0.0051 16.8 0.2 0.0088 16.0 0.2 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Elf1 PF05129.13 gi|240102571|ref|YP_002958880.1| - 0.0078 16.2 0.1 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.6 gi|240102571|ref|YP_002958880.1| - 0.027 13.9 0.7 5 6.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|240102571|ref|YP_002958880.1| - 0.029 14.5 0.1 3.8 7.7 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|240102571|ref|YP_002958880.1| - 0.044 13.7 0.7 0.079 12.9 0.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|240102571|ref|YP_002958880.1| - 0.05 13.6 1.0 3.4 7.7 1.8 2.6 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|240102571|ref|YP_002958880.1| - 0.067 13.6 0.1 0.11 12.8 0.1 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.6 gi|240102571|ref|YP_002958880.1| - 0.073 13.0 2.7 0.42 10.6 2.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.8 gi|240102571|ref|YP_002958880.1| - 0.13 12.2 1.7 1.9 8.4 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.12 gi|240102571|ref|YP_002958880.1| - 0.17 11.7 0.2 0.24 11.2 0.2 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation TFIIS_C PF01096.18 gi|240102571|ref|YP_002958880.1| - 0.25 11.2 3.6 7.2 6.5 3.6 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zf-RRN7 PF11781.8 gi|240102571|ref|YP_002958880.1| - 0.58 9.9 2.8 4.8 6.9 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PhnA_Zn_Ribbon PF08274.12 gi|240102571|ref|YP_002958880.1| - 1.1 9.3 3.2 1.3 9.1 0.3 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-C2H2_6 PF13912.6 gi|240102571|ref|YP_002958880.1| - 4.5 7.4 4.8 58 3.9 0.2 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger DNA_RNApol_7kD PF03604.13 gi|240102571|ref|YP_002958880.1| - 5.1 6.9 6.3 10 5.9 4.8 2.2 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.10 gi|240102571|ref|YP_002958880.1| - 5.6 6.8 5.3 26 4.7 0.6 2.3 1 1 1 2 2 2 0 A2L zinc ribbon domain DUF5592 PF17332.2 gi|240102572|ref|YP_002958881.1| - 0.018 15.6 2.6 0.021 15.4 2.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5592) DUF2244 PF10003.9 gi|240102572|ref|YP_002958881.1| - 0.081 12.6 0.8 0.096 12.4 0.8 1.2 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF2207 PF09972.9 gi|240102572|ref|YP_002958881.1| - 0.18 10.5 1.3 0.18 10.5 1.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SPC25 PF06703.11 gi|240102572|ref|YP_002958881.1| - 0.77 9.5 4.2 0.9 9.3 4.2 1.0 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) PhoQ_Sensor PF08918.10 gi|240102572|ref|YP_002958881.1| - 1.3 8.9 4.2 1.4 8.7 4.2 1.1 1 0 0 1 1 1 0 PhoQ Sensor CbiZ PF01955.18 gi|240102573|ref|YP_002958882.1| - 4.3e-44 150.9 0.1 4.8e-44 150.8 0.1 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Methyltransf_25 PF13649.6 gi|240102574|ref|YP_002958883.1| - 1.1e-06 29.2 0.0 1.7e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240102574|ref|YP_002958883.1| - 0.00015 21.7 0.0 0.00021 21.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain HTH_10 PF04967.12 gi|240102574|ref|YP_002958883.1| - 0.018 14.8 0.0 0.084 12.7 0.0 2.1 3 0 0 3 3 3 0 HTH DNA binding domain Methyltransf_31 PF13847.6 gi|240102574|ref|YP_002958883.1| - 0.11 12.3 0.0 0.25 11.1 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Sigma70_r4_2 PF08281.12 gi|240102576|ref|YP_002958885.1| - 7.1e-06 25.6 0.2 1.2e-05 24.8 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|240102576|ref|YP_002958885.1| - 0.00015 21.5 0.0 0.0021 17.8 0.1 2.1 2 0 0 2 2 2 1 HTH DNA binding domain HTH_23 PF13384.6 gi|240102576|ref|YP_002958885.1| - 0.00048 19.9 0.1 0.001 18.8 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|240102576|ref|YP_002958885.1| - 0.00058 19.8 0.5 0.0008 19.4 0.5 1.2 1 0 0 1 1 1 1 ECF sigma factor HTH_7 PF02796.15 gi|240102576|ref|YP_002958885.1| - 0.0011 19.0 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 gi|240102576|ref|YP_002958885.1| - 0.0022 17.9 0.0 0.0039 17.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.22 gi|240102576|ref|YP_002958885.1| - 0.0052 16.8 0.0 0.0095 16.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.16 gi|240102576|ref|YP_002958885.1| - 0.006 16.1 0.2 0.01 15.4 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|240102576|ref|YP_002958885.1| - 0.0064 16.5 0.3 0.011 15.7 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|240102576|ref|YP_002958885.1| - 0.0082 16.1 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|240102576|ref|YP_002958885.1| - 0.012 15.3 0.1 0.021 14.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family GerE PF00196.19 gi|240102576|ref|YP_002958885.1| - 0.013 15.0 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|240102576|ref|YP_002958885.1| - 0.015 14.8 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|240102576|ref|YP_002958885.1| - 0.041 13.6 1.1 0.047 13.5 0.1 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain KORA PF16509.5 gi|240102576|ref|YP_002958885.1| - 0.056 13.7 0.0 0.093 13.0 0.0 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_Crp_2 PF13545.6 gi|240102576|ref|YP_002958885.1| - 0.061 13.3 0.2 0.13 12.3 0.0 1.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Cro PF09048.10 gi|240102576|ref|YP_002958885.1| - 0.077 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Cro TrmB PF01978.19 gi|240102576|ref|YP_002958885.1| - 0.078 12.9 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF134 PF02001.16 gi|240102576|ref|YP_002958885.1| - 0.086 13.4 0.1 0.15 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_AsnC-type PF13404.6 gi|240102576|ref|YP_002958885.1| - 0.097 12.5 0.4 0.22 11.4 0.2 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF2774 PF11242.8 gi|240102576|ref|YP_002958885.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) PAX PF00292.18 gi|240102576|ref|YP_002958885.1| - 0.2 11.6 0.2 0.76 9.7 0.0 1.9 2 1 1 3 3 3 0 'Paired box' domain SdpI PF13630.6 gi|240102577|ref|YP_002958886.1| - 2e-06 27.8 0.3 2e-06 27.8 0.3 3.2 3 1 0 3 3 3 1 SdpI/YhfL protein family DUF3784 PF12650.7 gi|240102577|ref|YP_002958886.1| - 0.01 16.0 6.5 0.13 12.5 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3784) MFS_1 PF07690.16 gi|240102577|ref|YP_002958886.1| - 0.061 12.2 20.9 0.2 10.6 3.8 2.2 1 1 1 2 2 2 0 Major Facilitator Superfamily DUF1772 PF08592.11 gi|240102577|ref|YP_002958886.1| - 0.19 12.0 12.4 1 9.7 0.1 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF1772) DUF3040 PF11239.8 gi|240102577|ref|YP_002958886.1| - 1.1 9.6 13.1 0.17 12.2 0.5 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF3040) Phage_holin_3_6 PF07332.11 gi|240102577|ref|YP_002958886.1| - 1.6 8.8 0.0 1.6 8.8 0.0 3.1 2 1 1 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III S_4TM PF18159.1 gi|240102577|ref|YP_002958886.1| - 3.9 6.7 5.1 4.6 6.4 0.0 2.2 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain Trp_oprn_chp PF09534.10 gi|240102577|ref|YP_002958886.1| - 4.3 7.1 8.7 0.94 9.2 4.6 1.9 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF1648 PF07853.11 gi|240102578|ref|YP_002958887.1| - 8.3e-19 67.0 0.2 5.5e-18 64.4 0.1 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1648) SdpI PF13630.6 gi|240102578|ref|YP_002958887.1| - 8.1e-11 41.9 0.8 8.1e-11 41.9 0.8 3.5 3 0 0 3 3 3 1 SdpI/YhfL protein family Phage_holin_3_6 PF07332.11 gi|240102578|ref|YP_002958887.1| - 0.14 12.2 0.1 0.14 12.2 0.1 4.1 3 1 1 4 4 4 0 Putative Actinobacterial Holin-X, holin superfamily III PadR PF03551.14 gi|240102579|ref|YP_002958888.1| - 3.3e-22 78.2 0.3 4.7e-22 77.7 0.3 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|240102579|ref|YP_002958888.1| - 0.00018 21.6 0.0 0.00068 19.8 0.0 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|240102579|ref|YP_002958888.1| - 0.04 14.0 0.1 0.058 13.4 0.1 1.4 1 1 0 1 1 1 0 Replication-relaxation HxlR PF01638.17 gi|240102579|ref|YP_002958888.1| - 0.067 13.1 0.0 0.093 12.6 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF505 PF04458.12 gi|240102579|ref|YP_002958888.1| - 0.084 11.2 0.0 0.094 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) P66_CC PF16563.5 gi|240102579|ref|YP_002958888.1| - 0.74 9.5 0.1 0.74 9.5 0.1 2.4 3 0 0 3 3 3 0 Coiled-coil and interaction region of P66A and P66B with MBD2 YhfC PF10086.9 gi|240102580|ref|YP_002958889.1| - 1e-12 48.0 19.7 8.1e-07 28.6 9.0 2.5 2 1 1 3 3 3 2 YhfC intramembrane metalloprotease DUF3493 PF11998.8 gi|240102580|ref|YP_002958889.1| - 0.0062 16.7 1.3 0.52 10.5 0.0 2.9 3 0 0 3 3 3 2 Low psii accumulation1 / Rep27 DUF4131 PF13567.6 gi|240102580|ref|YP_002958889.1| - 6.6 6.4 8.6 1.8 8.2 3.3 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) YbjQ_1 PF01906.17 gi|240102581|ref|YP_002958890.1| - 6.5e-36 123.1 6.3 7.4e-36 123.0 6.3 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DNA_binding_1 PF01035.20 gi|240102581|ref|YP_002958890.1| - 0.052 13.7 0.2 1 9.6 0.1 2.2 1 1 1 2 2 2 0 6-O-methylguanine DNA methyltransferase, DNA binding domain PGM1_C PF18105.1 gi|240102581|ref|YP_002958890.1| - 0.12 11.9 0.5 0.26 10.9 0.5 1.6 1 0 0 1 1 1 0 PGM1 C-terminal domain Peptidase_C92 PF05708.12 gi|240102582|ref|YP_002958891.1| - 4.5e-38 131.0 0.0 6.4e-38 130.5 0.0 1.2 1 0 0 1 1 1 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Diphthamide_syn PF01866.17 gi|240102583|ref|YP_002958892.1| - 1.1e-74 251.6 0.0 1.3e-74 251.4 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein STAS PF01740.21 gi|240102583|ref|YP_002958892.1| - 0.034 13.8 0.1 5.5 6.7 0.0 2.3 2 0 0 2 2 2 0 STAS domain HEAT_2 PF13646.6 gi|240102584|ref|YP_002958893.1| - 1.3e-06 28.7 5.5 0.13 12.7 0.0 5.5 3 2 1 4 4 4 2 HEAT repeats V-ATPase_H_C PF11698.8 gi|240102584|ref|YP_002958893.1| - 0.024 14.7 4.9 0.041 14.0 0.1 3.5 4 0 0 4 4 4 0 V-ATPase subunit H Fis1_TPR_N PF14852.6 gi|240102584|ref|YP_002958893.1| - 0.12 12.1 0.5 0.8 9.4 0.0 2.8 3 0 0 3 3 3 0 Fis1 N-terminal tetratricopeptide repeat EntA_Immun PF08951.10 gi|240102584|ref|YP_002958893.1| - 0.22 11.9 5.1 0.34 11.3 0.9 3.4 3 0 0 3 3 3 0 Enterocin A Immunity RPAP3_C PF13877.6 gi|240102584|ref|YP_002958893.1| - 0.5 10.9 5.6 46 4.6 0.0 4.7 6 0 0 6 6 6 0 Potential Monad-binding region of RPAP3 NitrOD5 PF11537.8 gi|240102586|ref|YP_002958895.1| - 2.4e-21 75.7 0.2 2.8e-21 75.4 0.2 1.1 1 0 0 1 1 1 1 Nitrosopumilus output domain 5 HNOB PF07700.15 gi|240102586|ref|YP_002958895.1| - 0.027 14.4 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Haem-NO-binding PqqD PF05402.12 gi|240102586|ref|YP_002958895.1| - 0.061 13.6 0.0 0.2 12.0 0.0 1.7 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) TrmB PF01978.19 gi|240102586|ref|YP_002958895.1| - 0.082 12.8 0.1 0.16 11.8 0.0 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB ATPase PF06745.13 gi|240102587|ref|YP_002958896.1| - 4.9e-79 264.9 7.2 1.2e-51 175.3 0.1 2.8 2 1 0 2 2 2 2 KaiC DnaB_C PF03796.15 gi|240102587|ref|YP_002958896.1| - 2.3e-17 63.2 2.0 3.2e-06 26.7 0.0 3.2 3 0 0 3 3 3 3 DnaB-like helicase C terminal domain RecA PF00154.21 gi|240102587|ref|YP_002958896.1| - 1.3e-16 60.9 0.0 2.1e-09 37.2 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|240102587|ref|YP_002958896.1| - 3.7e-12 46.2 0.0 3.9e-06 26.6 0.0 2.8 2 2 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|240102587|ref|YP_002958896.1| - 8.7e-12 45.1 1.0 2.4e-05 24.2 0.0 2.6 3 0 0 3 3 2 2 IstB-like ATP binding protein Rad51 PF08423.11 gi|240102587|ref|YP_002958896.1| - 2.4e-10 40.1 0.1 2.5e-05 23.7 0.0 2.8 3 0 0 3 3 3 2 Rad51 GvpD PF07088.11 gi|240102587|ref|YP_002958896.1| - 1.5e-09 37.0 2.4 2.8e-08 32.8 0.2 2.9 2 1 1 3 3 2 1 GvpD gas vesicle protein AAA_24 PF13479.6 gi|240102587|ref|YP_002958896.1| - 1.6e-08 34.5 1.2 0.00059 19.6 0.0 3.1 2 2 1 3 3 3 2 AAA domain AAA PF00004.29 gi|240102587|ref|YP_002958896.1| - 3.6e-08 33.9 3.2 0.0017 18.8 0.2 2.9 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|240102587|ref|YP_002958896.1| - 6.8e-08 32.2 0.3 0.0054 16.3 0.1 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region DUF2075 PF09848.9 gi|240102587|ref|YP_002958896.1| - 1.7e-07 30.8 0.2 9.7e-05 21.8 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|240102587|ref|YP_002958896.1| - 4e-07 30.6 0.1 0.013 15.9 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain NACHT PF05729.12 gi|240102587|ref|YP_002958896.1| - 8.5e-07 29.0 1.3 0.021 14.7 0.4 3.0 2 2 0 2 2 2 2 NACHT domain AAA_18 PF13238.6 gi|240102587|ref|YP_002958896.1| - 1.3e-06 29.0 0.2 0.00077 20.0 0.0 2.7 2 1 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|240102587|ref|YP_002958896.1| - 3.4e-06 26.6 1.0 0.019 14.4 0.1 2.6 2 0 0 2 2 2 2 PhoH-like protein AAA_22 PF13401.6 gi|240102587|ref|YP_002958896.1| - 4.2e-06 27.1 2.2 0.069 13.4 0.3 3.1 2 2 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|240102587|ref|YP_002958896.1| - 1.8e-05 24.1 0.2 0.17 11.0 0.0 2.2 2 0 0 2 2 2 2 TIP49 P-loop domain ResIII PF04851.15 gi|240102587|ref|YP_002958896.1| - 2.1e-05 24.6 1.3 0.015 15.3 0.2 2.5 2 1 0 2 2 2 2 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|240102587|ref|YP_002958896.1| - 2.3e-05 23.6 0.3 0.0047 16.0 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|240102587|ref|YP_002958896.1| - 2.7e-05 24.2 4.2 0.046 13.6 0.0 3.3 3 1 0 3 3 3 2 ATPase domain predominantly from Archaea RuvB_N PF05496.12 gi|240102587|ref|YP_002958896.1| - 2.9e-05 23.8 0.9 1.3 8.8 0.0 3.4 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|240102587|ref|YP_002958896.1| - 3.9e-05 23.7 1.7 0.0032 17.5 0.1 3.2 2 2 1 3 3 2 1 AAA domain AAA_11 PF13086.6 gi|240102587|ref|YP_002958896.1| - 5.6e-05 23.0 0.0 0.077 12.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|240102587|ref|YP_002958896.1| - 7.2e-05 22.6 0.0 0.07 12.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|240102587|ref|YP_002958896.1| - 8.9e-05 22.5 1.1 2.2 8.2 0.0 3.9 4 0 0 4 4 4 2 NTPase PAXNEB PF05625.11 gi|240102587|ref|YP_002958896.1| - 0.00014 21.2 4.1 0.17 11.0 0.0 2.9 3 0 0 3 3 3 2 PAXNEB protein AAA_19 PF13245.6 gi|240102587|ref|YP_002958896.1| - 0.00018 21.9 0.5 0.2 12.0 0.0 2.6 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|240102587|ref|YP_002958896.1| - 0.00022 21.0 1.5 0.47 10.1 0.1 3.0 3 0 0 3 3 3 2 Sigma-54 interaction domain CbiA PF01656.23 gi|240102587|ref|YP_002958896.1| - 0.00043 20.3 1.3 0.012 15.7 0.2 2.7 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain DEAD PF00270.29 gi|240102587|ref|YP_002958896.1| - 0.00055 19.7 0.3 0.35 10.6 0.1 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase Zeta_toxin PF06414.12 gi|240102587|ref|YP_002958896.1| - 0.00061 19.1 0.4 0.25 10.6 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin AAA_5 PF07728.14 gi|240102587|ref|YP_002958896.1| - 0.00071 19.6 1.0 1.5 8.8 0.1 2.9 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|240102587|ref|YP_002958896.1| - 0.00086 19.7 0.0 1.7 9.0 0.0 2.6 2 0 0 2 2 2 1 RNA helicase Zot PF05707.12 gi|240102587|ref|YP_002958896.1| - 0.00089 18.9 0.0 0.2 11.3 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) Elong_Iki1 PF10483.9 gi|240102587|ref|YP_002958896.1| - 0.0011 18.5 0.3 0.31 10.5 0.1 2.2 2 0 0 2 2 2 1 Elongator subunit Iki1 AAA_35 PF14516.6 gi|240102587|ref|YP_002958896.1| - 0.0012 17.7 0.5 0.91 8.3 0.0 2.5 3 0 0 3 3 3 2 AAA-like domain ABC_tran PF00005.27 gi|240102587|ref|YP_002958896.1| - 0.0012 19.3 2.4 0.67 10.5 0.4 2.6 2 0 0 2 2 2 1 ABC transporter Torsin PF06309.11 gi|240102587|ref|YP_002958896.1| - 0.0034 17.5 0.3 1 9.5 0.1 2.5 2 0 0 2 2 2 1 Torsin AAA_10 PF12846.7 gi|240102587|ref|YP_002958896.1| - 0.0035 16.3 0.2 0.48 9.3 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain SRP54 PF00448.22 gi|240102587|ref|YP_002958896.1| - 0.0041 16.8 0.0 0.1 12.2 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CobA_CobO_BtuR PF02572.15 gi|240102587|ref|YP_002958896.1| - 0.0045 17.3 3.2 1.8 8.8 0.1 3.1 3 0 0 3 3 3 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP cobW PF02492.19 gi|240102587|ref|YP_002958896.1| - 0.0062 16.1 0.6 2.1 7.9 0.1 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|240102587|ref|YP_002958896.1| - 0.0088 15.9 0.1 3.4 7.6 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|240102587|ref|YP_002958896.1| - 0.012 15.8 0.3 4 7.6 0.0 2.7 3 0 0 3 3 2 0 AAA domain Mg_chelatase PF01078.21 gi|240102587|ref|YP_002958896.1| - 0.013 14.9 1.0 2.3 7.6 0.1 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|240102587|ref|YP_002958896.1| - 0.017 14.9 4.2 2.1 8.1 0.2 3.3 3 0 0 3 3 3 0 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.6 gi|240102587|ref|YP_002958896.1| - 0.019 15.0 1.3 8.5 6.5 0.9 3.1 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_28 PF13521.6 gi|240102587|ref|YP_002958896.1| - 0.025 14.8 0.0 1.7 8.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain MipZ PF09140.11 gi|240102587|ref|YP_002958896.1| - 0.046 13.0 0.0 1.8 7.8 0.0 2.4 2 0 0 2 2 2 0 ATPase MipZ 6PF2K PF01591.18 gi|240102587|ref|YP_002958896.1| - 0.055 12.8 0.1 0.39 10.0 0.0 2.0 2 0 0 2 2 2 0 6-phosphofructo-2-kinase ATP-synt_ab PF00006.25 gi|240102587|ref|YP_002958896.1| - 0.059 13.0 0.0 2.9 7.5 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain TsaE PF02367.17 gi|240102587|ref|YP_002958896.1| - 0.061 13.3 1.9 4.3 7.3 0.1 2.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE APS_kinase PF01583.20 gi|240102587|ref|YP_002958896.1| - 0.082 12.8 0.3 6.4 6.6 0.1 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_31 PF13614.6 gi|240102587|ref|YP_002958896.1| - 0.17 11.8 0.6 0.81 9.6 0.1 2.4 2 2 0 2 2 2 0 AAA domain IPT PF01745.16 gi|240102587|ref|YP_002958896.1| - 0.3 10.4 2.2 1.5 8.2 0.1 2.7 3 0 0 3 3 3 0 Isopentenyl transferase DUF2791 PF10923.8 gi|240102587|ref|YP_002958896.1| - 0.92 8.3 3.9 2.1 7.1 0.2 2.5 3 0 0 3 3 3 0 P-loop Domain of unknown function (DUF2791) TniB PF05621.11 gi|240102587|ref|YP_002958896.1| - 0.95 8.8 4.8 7.4 5.9 0.3 3.2 3 1 0 3 3 3 0 Bacterial TniB protein UvrD-helicase PF00580.21 gi|240102587|ref|YP_002958896.1| - 1.6 8.2 4.4 1.3 8.5 0.1 2.4 3 0 0 3 3 2 0 UvrD/REP helicase N-terminal domain MTS PF05175.14 gi|240102588|ref|YP_002958897.1| - 1.4e-16 60.5 0.0 1.9e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|240102588|ref|YP_002958897.1| - 6.2e-16 58.6 0.2 7.9e-16 58.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|240102588|ref|YP_002958897.1| - 8.7e-11 41.8 0.0 1.1e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|240102588|ref|YP_002958897.1| - 1.4e-10 41.8 0.0 2.1e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|240102588|ref|YP_002958897.1| - 9.5e-08 32.0 0.0 1.3e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein UPF0020 PF01170.18 gi|240102588|ref|YP_002958897.1| - 1.1e-07 31.8 0.0 1.9e-07 31.0 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|240102588|ref|YP_002958897.1| - 3.6e-07 30.7 0.0 6.3e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|240102588|ref|YP_002958897.1| - 1.5e-06 28.0 0.0 2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.7 gi|240102588|ref|YP_002958897.1| - 9.2e-05 22.4 0.1 0.00014 21.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|240102588|ref|YP_002958897.1| - 0.00031 20.4 0.0 0.00043 19.9 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF43 PF01861.16 gi|240102588|ref|YP_002958897.1| - 0.00035 19.9 0.0 0.00049 19.4 0.0 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_32 PF13679.6 gi|240102588|ref|YP_002958897.1| - 0.0057 16.7 0.0 0.0072 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.17 gi|240102588|ref|YP_002958897.1| - 0.0082 15.5 0.0 0.011 15.0 0.0 1.1 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_23 PF13489.6 gi|240102588|ref|YP_002958897.1| - 0.033 14.0 0.0 0.039 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|240102588|ref|YP_002958897.1| - 0.046 13.1 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.16 gi|240102588|ref|YP_002958897.1| - 0.048 12.9 0.0 0.07 12.4 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_3 PF01596.17 gi|240102588|ref|YP_002958897.1| - 0.053 12.7 0.0 0.069 12.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase ADH_zinc_N PF00107.26 gi|240102588|ref|YP_002958897.1| - 0.11 12.5 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase ParE-like_toxin PF15781.5 gi|240102588|ref|YP_002958897.1| - 0.16 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 ParE-like toxin of type II bacterial toxin-antitoxin system PCMT PF01135.19 gi|240102588|ref|YP_002958897.1| - 0.16 11.7 0.1 0.22 11.3 0.1 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|240102588|ref|YP_002958897.1| - 0.16 11.6 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltr_RsmB-F PF01189.17 gi|240102589|ref|YP_002958898.1| - 2.1e-63 213.6 0.0 2.9e-63 213.1 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|240102589|ref|YP_002958898.1| - 6.7e-10 39.0 0.0 1.2e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|240102589|ref|YP_002958898.1| - 4.3e-09 36.7 0.0 9.3e-09 35.7 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|240102589|ref|YP_002958898.1| - 4.4e-08 33.4 0.0 7.2e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|240102589|ref|YP_002958898.1| - 0.0021 18.7 0.0 0.039 14.6 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|240102589|ref|YP_002958898.1| - 0.012 14.9 0.0 0.19 11.0 0.0 2.1 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family NusB PF01029.18 gi|240102589|ref|YP_002958898.1| - 0.024 14.9 0.1 0.063 13.5 0.0 1.8 2 0 0 2 2 2 0 NusB family Fibrillarin PF01269.17 gi|240102589|ref|YP_002958898.1| - 0.031 13.4 0.0 0.051 12.7 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin MTS PF05175.14 gi|240102589|ref|YP_002958898.1| - 0.048 13.2 0.0 1.6 8.3 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|240102589|ref|YP_002958898.1| - 0.049 13.5 0.1 0.66 9.8 0.1 2.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_5 PF01795.19 gi|240102589|ref|YP_002958898.1| - 0.14 11.7 0.0 8.5 5.8 0.0 2.2 2 0 0 2 2 2 0 MraW methylase family PIN PF01850.21 gi|240102590|ref|YP_002958899.1| - 8.3e-05 23.1 0.1 9.7e-05 22.9 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|240102590|ref|YP_002958899.1| - 0.016 15.4 0.0 0.016 15.4 0.0 1.1 1 0 0 1 1 1 0 PIN domain PIN_9 PF18477.1 gi|240102590|ref|YP_002958899.1| - 0.026 14.8 0.0 0.026 14.8 0.0 1.1 1 0 0 1 1 1 0 PIN like domain DBI_PRT PF02277.17 gi|240102591|ref|YP_002958900.1| - 5.2e-05 22.6 0.0 7.1e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase GATase_3 PF07685.14 gi|240102592|ref|YP_002958901.1| - 4.2e-51 173.4 0.0 6.5e-51 172.7 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|240102592|ref|YP_002958901.1| - 1.4e-21 76.9 0.0 2.6e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|240102592|ref|YP_002958901.1| - 1.8e-14 54.0 0.0 2.4e-13 50.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain Vault_4 PF17796.1 gi|240102592|ref|YP_002958901.1| - 0.011 15.8 0.0 0.71 10.0 0.0 2.5 2 0 0 2 2 2 0 Major Vault Protein repeat domain SNO PF01174.19 gi|240102592|ref|YP_002958901.1| - 0.039 13.8 0.0 0.071 13.0 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family TMEM131_like PF12371.8 gi|240102592|ref|YP_002958901.1| - 0.088 13.1 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Transmembrane protein 131-like GATase_5 PF13507.6 gi|240102592|ref|YP_002958901.1| - 0.092 11.8 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|240102592|ref|YP_002958901.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Peptidase family S51 NTP_transf_3 PF12804.7 gi|240102593|ref|YP_002958902.1| - 9e-17 61.9 0.0 1e-16 61.7 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|240102593|ref|YP_002958902.1| - 0.0009 19.2 0.0 0.0034 17.3 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase Glyco_hydro_114 PF03537.13 gi|240102594|ref|YP_002958903.1| - 2.8e-31 108.6 0.0 3.5e-31 108.3 0.0 1.1 1 0 0 1 1 1 1 Glycoside-hydrolase family GH114 CobS PF02654.15 gi|240102595|ref|YP_002958904.1| - 2e-41 142.5 9.1 2.3e-41 142.2 9.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase PgpA PF04608.13 gi|240102596|ref|YP_002958905.1| - 1e-09 38.5 0.0 1.3e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A PIN_2 PF10130.9 gi|240102597|ref|YP_002958906.1| - 5.6e-17 62.2 0.0 7.2e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|240102597|ref|YP_002958906.1| - 6.4e-06 26.9 0.0 7.7e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 PIN domain Tautomerase_2 PF14552.6 gi|240102598|ref|YP_002958907.1| - 0.019 15.0 0.2 0.51 10.5 0.0 2.1 1 1 0 2 2 2 0 Tautomerase enzyme Diphthami_syn_2 PF01902.17 gi|240102599|ref|YP_002958908.1| - 3e-39 134.8 0.0 3.3e-39 134.6 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase UDG PF03167.19 gi|240102600|ref|YP_002958909.1| - 6e-21 75.0 0.0 8.5e-21 74.6 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily CobD_Cbib PF03186.13 gi|240102601|ref|YP_002958910.1| - 3e-86 289.0 0.0 3.6e-86 288.8 0.0 1.0 1 0 0 1 1 1 1 CobD/Cbib protein DUF5518 PF17647.1 gi|240102601|ref|YP_002958910.1| - 0.0013 18.9 0.3 0.0013 18.9 0.3 1.9 2 0 0 2 2 2 1 Family of unknown function (DUF5518) DUF5056 PF16479.5 gi|240102601|ref|YP_002958910.1| - 0.17 12.2 0.0 5 7.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF5056) Aminotran_1_2 PF00155.21 gi|240102602|ref|YP_002958911.1| - 1.5e-28 100.0 0.0 2.8e-28 99.1 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II DUF364 PF04016.12 gi|240102604|ref|YP_002958913.1| - 2e-35 121.5 0.0 4.1e-35 120.5 0.0 1.4 2 0 0 2 2 2 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|240102604|ref|YP_002958913.1| - 1.4e-12 47.7 0.0 2.6e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF2250 PF10007.9 gi|240102605|ref|YP_002958914.1| - 2.5e-33 114.0 0.2 4e-33 113.4 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|240102605|ref|YP_002958914.1| - 0.0074 16.0 0.0 0.025 14.3 0.0 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|240102605|ref|YP_002958914.1| - 0.04 13.8 0.0 0.14 12.1 0.0 1.9 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PEMT PF04191.13 gi|240102606|ref|YP_002958915.1| - 5.9e-06 26.6 0.9 1.9e-05 25.0 0.8 2.0 1 1 0 1 1 1 1 Phospholipid methyltransferase ICMT PF04140.14 gi|240102606|ref|YP_002958915.1| - 8.5e-05 22.9 0.1 0.0002 21.7 0.0 1.6 1 1 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF3007 PF11460.8 gi|240102606|ref|YP_002958915.1| - 0.071 13.4 0.5 0.13 12.5 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) Phage_holin_3_6 PF07332.11 gi|240102606|ref|YP_002958915.1| - 2 8.4 8.5 2.2 8.4 4.9 2.0 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Nitro_FeMo-Co PF02579.17 gi|240102607|ref|YP_002958916.1| - 2.8e-15 56.4 0.0 3.4e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Rubrerythrin PF02915.17 gi|240102608|ref|YP_002958917.1| - 4.3e-13 49.8 12.6 2.5e-07 31.2 2.5 2.2 1 1 1 2 2 2 2 Rubrerythrin Ferritin PF00210.24 gi|240102608|ref|YP_002958917.1| - 0.00026 20.9 0.4 0.00039 20.4 0.4 1.3 1 0 0 1 1 1 1 Ferritin-like domain Nitro_FeMo-Co PF02579.17 gi|240102609|ref|YP_002958918.1| - 9.8e-23 80.3 0.2 1.2e-22 80.0 0.2 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF5320 PF17253.2 gi|240102609|ref|YP_002958918.1| - 0.19 12.8 9.4 0.39 11.8 9.4 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5320) UPF0051 PF01458.17 gi|240102612|ref|YP_002958921.1| - 2.2e-52 177.9 0.0 3e-52 177.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|240102613|ref|YP_002958922.1| - 1.8e-21 77.1 0.0 2.5e-21 76.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240102613|ref|YP_002958922.1| - 3.2e-10 40.3 1.4 1e-05 25.5 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240102613|ref|YP_002958922.1| - 1.1e-05 25.0 0.1 0.013 14.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|240102613|ref|YP_002958922.1| - 0.00015 21.4 0.0 0.00029 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|240102613|ref|YP_002958922.1| - 0.0017 18.0 0.0 0.013 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|240102613|ref|YP_002958922.1| - 0.0036 17.6 0.1 0.014 15.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|240102613|ref|YP_002958922.1| - 0.0039 16.8 0.0 0.0082 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|240102613|ref|YP_002958922.1| - 0.0094 15.9 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|240102613|ref|YP_002958922.1| - 0.026 15.0 0.0 0.049 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|240102613|ref|YP_002958922.1| - 0.031 14.0 0.1 0.97 9.1 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|240102613|ref|YP_002958922.1| - 0.053 13.4 0.1 0.88 9.5 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA PF00004.29 gi|240102613|ref|YP_002958922.1| - 0.055 13.9 0.3 0.28 11.6 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|240102613|ref|YP_002958922.1| - 0.063 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_13 PF13166.6 gi|240102613|ref|YP_002958922.1| - 0.092 11.4 0.0 0.42 9.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|240102613|ref|YP_002958922.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain ANTAR PF03861.14 gi|240102613|ref|YP_002958922.1| - 0.15 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 ANTAR domain PhoH PF02562.16 gi|240102613|ref|YP_002958922.1| - 0.16 11.4 0.0 0.79 9.1 0.0 2.0 1 1 1 2 2 2 0 PhoH-like protein AAA_24 PF13479.6 gi|240102613|ref|YP_002958922.1| - 0.18 11.5 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|240102613|ref|YP_002958922.1| - 0.21 11.3 0.0 0.34 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RNA12 PF10443.9 gi|240102613|ref|YP_002958922.1| - 0.25 10.1 0.0 0.32 9.7 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein Nitro_FeMo-Co PF02579.17 gi|240102614|ref|YP_002958923.1| - 7e-21 74.4 0.0 9.4e-21 74.0 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Lactamase_B PF00753.27 gi|240102615|ref|YP_002958924.1| - 3e-18 66.5 5.2 9.1e-18 65.0 5.2 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|240102615|ref|YP_002958924.1| - 7.7e-13 48.4 0.0 1.4e-12 47.6 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|240102615|ref|YP_002958924.1| - 0.0063 16.4 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|240102615|ref|YP_002958924.1| - 0.0089 15.5 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|240102615|ref|YP_002958924.1| - 0.014 15.3 0.1 0.037 14.0 0.1 1.8 1 0 0 1 1 1 0 Zn-dependent metallo-hydrolase RNA specificity domain Phage_ABA_S PF18066.1 gi|240102616|ref|YP_002958925.1| - 0.0078 16.9 1.7 0.013 16.1 1.7 1.4 1 1 0 1 1 1 1 Phage ABA sandwich domain CHIPS PF11434.8 gi|240102616|ref|YP_002958925.1| - 0.082 12.7 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Chemotaxis-inhibiting protein CHIPS HAD_2 PF13419.6 gi|240102616|ref|YP_002958925.1| - 0.1 12.7 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase TauE PF01925.19 gi|240102617|ref|YP_002958926.1| - 2.2e-56 191.2 28.0 2.5e-56 191.0 28.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE TauE PF01925.19 gi|240102618|ref|YP_002958927.1| - 1.4e-59 201.6 34.6 1.7e-59 201.4 34.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2301 PF10063.9 gi|240102618|ref|YP_002958927.1| - 0.015 15.7 5.9 0.021 15.2 1.1 2.5 2 1 0 2 2 2 0 Uncharacterized integral membrane protein (DUF2301) PIN PF01850.21 gi|240102619|ref|YP_002958928.1| - 9.1e-12 45.5 0.4 1.2e-11 45.2 0.4 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|240102619|ref|YP_002958928.1| - 6.1e-05 23.8 0.6 0.00013 22.7 0.6 1.5 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|240102619|ref|YP_002958928.1| - 0.016 15.0 0.1 0.16 11.8 0.0 2.5 2 2 1 3 3 3 0 Domain of unknown function (DUF5615) PIN_12 PF16289.5 gi|240102619|ref|YP_002958928.1| - 0.03 14.8 0.0 0.081 13.4 0.0 1.6 1 1 1 2 2 2 0 PIN domain DUF4411 PF14367.6 gi|240102619|ref|YP_002958928.1| - 0.039 13.9 0.1 2 8.3 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) MazE_antitoxin PF04014.18 gi|240102620|ref|YP_002958929.1| - 2.4e-10 40.1 1.2 4.9e-10 39.1 1.2 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|240102620|ref|YP_002958929.1| - 0.0048 16.9 0.1 0.0066 16.4 0.1 1.4 1 1 0 1 1 1 1 MraZ protein, putative antitoxin-like PrlF_antitoxin PF15937.5 gi|240102620|ref|YP_002958929.1| - 0.018 15.5 0.1 0.037 14.5 0.1 1.7 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin AbrB-like PF14250.6 gi|240102620|ref|YP_002958929.1| - 0.047 13.8 0.0 0.086 12.9 0.0 1.5 1 0 0 1 1 1 0 AbrB-like transcriptional regulator 2-Hacid_dh_C PF02826.19 gi|240102622|ref|YP_002958931.1| - 2.8e-56 189.7 0.0 2.6e-55 186.6 0.0 2.2 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|240102622|ref|YP_002958931.1| - 9.7e-31 106.2 0.0 1.2e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|240102622|ref|YP_002958931.1| - 4.9e-08 33.3 0.0 8.2e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|240102622|ref|YP_002958931.1| - 9.6e-08 32.5 0.0 2.1e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|240102622|ref|YP_002958931.1| - 7.5e-07 28.9 0.2 5.2e-06 26.1 0.0 2.3 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 gi|240102622|ref|YP_002958931.1| - 0.00021 21.3 0.4 0.011 15.7 0.4 2.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 gi|240102622|ref|YP_002958931.1| - 0.00084 19.4 0.0 0.0037 17.3 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.21 gi|240102622|ref|YP_002958931.1| - 0.004 17.2 0.1 0.015 15.4 0.1 1.8 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IclR PF01614.18 gi|240102622|ref|YP_002958931.1| - 0.012 15.5 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial transcriptional regulator ApbA PF02558.16 gi|240102622|ref|YP_002958931.1| - 0.044 13.4 0.0 0.083 12.5 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.9 gi|240102622|ref|YP_002958931.1| - 0.11 12.4 0.0 0.35 10.7 0.0 1.8 1 0 0 1 1 1 0 Rossmann-like domain NAD_binding_7 PF13241.6 gi|240102622|ref|YP_002958931.1| - 0.14 12.6 0.0 0.31 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding DpaA_N PF16924.5 gi|240102622|ref|YP_002958931.1| - 0.15 12.1 0.0 0.47 10.5 0.0 1.8 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain ThiF PF00899.21 gi|240102622|ref|YP_002958931.1| - 0.19 11.1 0.1 1.4 8.2 0.1 2.1 2 0 0 2 2 2 0 ThiF family HAD_2 PF13419.6 gi|240102623|ref|YP_002958932.1| - 1.7e-27 96.6 0.0 2.4e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240102623|ref|YP_002958932.1| - 4.8e-17 63.0 0.0 1.5e-16 61.3 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|240102623|ref|YP_002958932.1| - 1.4e-09 37.9 0.0 2.9e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|240102623|ref|YP_002958932.1| - 1e-06 29.3 0.1 1.6e-06 28.6 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|240102623|ref|YP_002958932.1| - 0.00048 19.6 0.0 0.0054 16.1 0.0 2.4 3 0 0 3 3 3 1 Putative Phosphatase AsnC_trans_reg PF01037.21 gi|240102624|ref|YP_002958933.1| - 0.00048 20.0 0.0 0.00065 19.6 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|240102624|ref|YP_002958933.1| - 0.0015 18.4 0.0 0.011 15.6 0.0 1.9 2 0 0 2 2 2 1 GYD domain Radical_SAM PF04055.21 gi|240102625|ref|YP_002958934.1| - 2.3e-13 50.8 0.1 8e-13 49.1 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily CbiA PF01656.23 gi|240102626|ref|YP_002958935.1| - 1.2e-17 64.2 0.0 1.7e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|240102626|ref|YP_002958935.1| - 1.3e-14 54.3 0.0 3.6e-09 36.4 0.0 3.1 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_6 PF12837.7 gi|240102626|ref|YP_002958935.1| - 3.3e-10 39.6 13.7 3.2e-06 27.0 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|240102626|ref|YP_002958935.1| - 1.1e-09 37.7 12.7 1.1e-05 25.0 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240102626|ref|YP_002958935.1| - 1.8e-08 34.4 7.3 3e-08 33.7 7.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102626|ref|YP_002958935.1| - 4e-07 30.0 4.0 0.011 15.8 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|240102626|ref|YP_002958935.1| - 1.2e-06 28.6 0.0 1.1e-05 25.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.18 gi|240102626|ref|YP_002958935.1| - 1.2e-06 28.2 0.0 0.011 15.2 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_9 PF13187.6 gi|240102626|ref|YP_002958935.1| - 9.1e-06 25.8 24.0 5.3e-05 23.3 12.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|240102626|ref|YP_002958935.1| - 5.6e-05 23.6 14.0 0.00041 20.9 14.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|240102626|ref|YP_002958935.1| - 6.9e-05 23.2 6.4 0.026 15.0 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102626|ref|YP_002958935.1| - 7e-05 22.7 12.5 0.015 15.3 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240102626|ref|YP_002958935.1| - 0.00014 22.4 6.7 0.041 14.4 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240102626|ref|YP_002958935.1| - 0.00019 21.7 11.1 0.012 16.1 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|240102626|ref|YP_002958935.1| - 0.00022 22.1 10.4 0.063 14.2 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain MipZ PF09140.11 gi|240102626|ref|YP_002958935.1| - 0.00088 18.6 0.1 0.0014 17.9 0.1 1.3 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|240102626|ref|YP_002958935.1| - 0.0019 17.4 3.0 0.0029 16.8 0.2 2.4 3 0 0 3 3 3 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|240102626|ref|YP_002958935.1| - 0.0073 15.9 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.11 gi|240102626|ref|YP_002958935.1| - 0.0079 15.5 0.0 0.27 10.5 0.0 2.1 2 0 0 2 2 2 1 VirC1 protein CBP_BcsQ PF06564.12 gi|240102626|ref|YP_002958935.1| - 0.021 14.3 0.0 0.88 9.0 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ GTP1_OBG PF01018.22 gi|240102626|ref|YP_002958935.1| - 0.044 13.4 0.1 7.6 6.1 0.0 2.3 2 0 0 2 2 2 0 GTP1/OBG PhoH PF02562.16 gi|240102626|ref|YP_002958935.1| - 0.086 12.3 0.1 0.26 10.7 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein Fer4_3 PF12798.7 gi|240102626|ref|YP_002958935.1| - 0.32 12.0 18.6 1 10.5 6.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|240102626|ref|YP_002958935.1| - 1.7 9.5 9.3 1.9 9.4 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain CbiA PF01656.23 gi|240102627|ref|YP_002958936.1| - 1.5e-21 76.8 0.0 1.8e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|240102627|ref|YP_002958936.1| - 9.1e-17 61.3 0.0 4.5e-09 36.1 0.0 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_21 PF14697.6 gi|240102627|ref|YP_002958936.1| - 3.4e-12 46.3 10.2 3.4e-12 46.3 10.2 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|240102627|ref|YP_002958936.1| - 1.3e-08 34.3 20.1 3.2e-06 26.7 6.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_31 PF13614.6 gi|240102627|ref|YP_002958936.1| - 3.2e-07 30.4 0.0 3.2e-06 27.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|240102627|ref|YP_002958936.1| - 7.4e-07 28.9 0.0 0.012 15.1 0.0 2.4 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_2 PF12797.7 gi|240102627|ref|YP_002958936.1| - 3.3e-06 26.8 13.7 0.0015 18.5 3.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102627|ref|YP_002958936.1| - 4.6e-06 27.1 28.3 3.2e-05 24.4 14.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240102627|ref|YP_002958936.1| - 7e-06 26.9 5.1 0.037 15.0 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|240102627|ref|YP_002958936.1| - 1.8e-05 24.7 13.0 0.0046 17.1 14.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240102627|ref|YP_002958936.1| - 7.4e-05 22.8 10.7 0.00013 22.0 10.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|240102627|ref|YP_002958936.1| - 0.0001 22.8 2.8 0.028 15.0 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|240102627|ref|YP_002958936.1| - 0.00071 18.8 0.0 0.0015 17.8 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|240102627|ref|YP_002958936.1| - 0.00077 19.0 0.0 0.41 10.1 0.0 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_6 PF12837.7 gi|240102627|ref|YP_002958936.1| - 0.0013 18.7 15.6 0.0057 16.7 7.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_26 PF13500.6 gi|240102627|ref|YP_002958936.1| - 0.0063 16.4 0.3 0.97 9.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain GTP_EFTU PF00009.27 gi|240102627|ref|YP_002958936.1| - 0.063 12.8 0.0 7.9 6.0 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|240102627|ref|YP_002958936.1| - 0.093 12.6 0.0 2.3 8.1 0.0 2.4 2 1 0 2 2 2 0 RsgA GTPase Fer4_13 PF13370.6 gi|240102627|ref|YP_002958936.1| - 0.4 11.3 14.8 0.5 10.9 4.8 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|240102627|ref|YP_002958936.1| - 1.4 9.6 13.3 1.9 9.2 4.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|240102627|ref|YP_002958936.1| - 2.4 8.7 14.7 3.2 8.3 5.4 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain DUF134 PF02001.16 gi|240102628|ref|YP_002958937.1| - 2.2e-25 89.0 0.0 2.8e-25 88.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4 PF04545.16 gi|240102628|ref|YP_002958937.1| - 6e-09 35.3 0.1 8.8e-09 34.8 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|240102628|ref|YP_002958937.1| - 3.3e-08 33.1 0.0 4.6e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|240102628|ref|YP_002958937.1| - 5.5e-06 26.0 0.0 8.2e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|240102628|ref|YP_002958937.1| - 0.00011 22.1 0.2 0.00014 21.9 0.2 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_31 PF13560.6 gi|240102628|ref|YP_002958937.1| - 0.00083 19.6 0.0 0.00097 19.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|240102628|ref|YP_002958937.1| - 0.0067 16.0 0.0 0.0092 15.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|240102628|ref|YP_002958937.1| - 0.0087 16.1 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_11 PF08279.12 gi|240102628|ref|YP_002958937.1| - 0.01 15.7 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_38 PF13936.6 gi|240102628|ref|YP_002958937.1| - 0.01 15.5 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|240102628|ref|YP_002958937.1| - 0.018 15.0 0.0 0.025 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.6 gi|240102628|ref|YP_002958937.1| - 0.026 14.5 0.0 0.035 14.1 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|240102628|ref|YP_002958937.1| - 0.034 14.1 0.0 0.048 13.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.6 gi|240102628|ref|YP_002958937.1| - 0.035 14.1 0.1 0.035 14.1 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.6 gi|240102628|ref|YP_002958937.1| - 0.038 14.1 0.0 0.068 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|240102628|ref|YP_002958937.1| - 0.046 13.5 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 HTH DNA binding domain TnsD PF15978.5 gi|240102628|ref|YP_002958937.1| - 0.058 12.4 0.0 0.07 12.1 0.0 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D TrmB PF01978.19 gi|240102628|ref|YP_002958937.1| - 0.12 12.3 0.2 0.21 11.5 0.0 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB SMN PF06003.12 gi|240102628|ref|YP_002958937.1| - 0.13 11.5 0.2 0.13 11.5 0.2 1.1 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) HTH_psq PF05225.16 gi|240102628|ref|YP_002958937.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain MEKHLA PF08670.11 gi|240102628|ref|YP_002958937.1| - 0.16 11.8 0.0 0.21 11.5 0.0 1.1 1 0 0 1 1 1 0 MEKHLA domain HU-DNA_bdg PF14848.6 gi|240102628|ref|YP_002958937.1| - 0.22 11.5 0.0 0.28 11.2 0.0 1.1 1 0 0 1 1 1 0 DNA-binding domain CENP-F_leu_zip PF10473.9 gi|240102629|ref|YP_002958938.1| - 3.3 7.7 12.0 0.79 9.7 0.6 3.1 2 1 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HTH_24 PF13412.6 gi|240102630|ref|YP_002958939.1| - 2e-06 27.2 0.0 4.5e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|240102630|ref|YP_002958939.1| - 2.8e-06 27.1 0.0 5.2e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|240102630|ref|YP_002958939.1| - 2.3e-05 24.2 0.0 3.9e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|240102630|ref|YP_002958939.1| - 0.00096 19.0 1.4 0.0015 18.4 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|240102630|ref|YP_002958939.1| - 0.0013 18.4 0.0 0.0028 17.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|240102630|ref|YP_002958939.1| - 0.0051 16.6 0.0 0.008 15.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain MGC-24 PF05283.11 gi|240102630|ref|YP_002958939.1| - 0.0089 16.5 6.7 0.014 15.9 6.7 1.3 1 0 0 1 1 1 1 Multi-glycosylated core protein 24 (MGC-24), sialomucin Fe_dep_repress PF01325.19 gi|240102630|ref|YP_002958939.1| - 0.011 15.9 0.0 0.028 14.6 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4366 PF14283.6 gi|240102630|ref|YP_002958939.1| - 0.13 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) DUF4381 PF14316.6 gi|240102630|ref|YP_002958939.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Alpha_GJ PF03229.13 gi|240102630|ref|YP_002958939.1| - 0.56 10.8 10.3 0.94 10.0 10.3 1.4 1 0 0 1 1 1 0 Alphavirus glycoprotein J Mucin PF01456.17 gi|240102630|ref|YP_002958939.1| - 0.78 9.7 31.3 2.1 8.4 31.3 1.7 1 0 0 1 1 1 0 Mucin-like glycoprotein FtsH_ext PF06480.15 gi|240102630|ref|YP_002958939.1| - 2.2 8.7 0.0 2.2 8.7 0.0 3.6 3 2 0 3 3 2 0 FtsH Extracellular DUF515 PF04415.12 gi|240102630|ref|YP_002958939.1| - 9 4.6 11.7 1.1e+02 0.9 12.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF515) Metallophos PF00149.28 gi|240102631|ref|YP_002958940.1| - 0.00024 21.7 0.2 0.00037 21.1 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DEAD_assoc PF08494.11 gi|240102633|ref|YP_002958942.1| - 2.4e-54 184.1 0.1 5.5e-54 182.9 0.1 1.7 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|240102633|ref|YP_002958942.1| - 4.7e-29 101.4 0.1 1.9e-27 96.1 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|240102633|ref|YP_002958942.1| - 1.2e-15 57.8 0.0 3.5e-15 56.3 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|240102633|ref|YP_002958942.1| - 1.3e-11 44.7 0.0 1e-10 41.9 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|240102633|ref|YP_002958942.1| - 0.028 13.5 0.7 0.41 9.7 0.0 2.6 3 0 0 3 3 3 0 Type II/IV secretion system protein DUF1424 PF07232.11 gi|240102633|ref|YP_002958942.1| - 0.1 11.6 0.2 0.24 10.3 0.0 1.6 2 0 0 2 2 2 0 Putative rep protein (DUF1424) SNF2_N PF00176.23 gi|240102633|ref|YP_002958942.1| - 0.11 11.2 0.0 0.21 10.3 0.0 1.5 1 1 0 1 1 1 0 SNF2 family N-terminal domain AdoMet_Synthase PF01941.19 gi|240102634|ref|YP_002958943.1| - 8.1e-178 591.2 5.1 9.1e-178 591.0 5.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|240102634|ref|YP_002958943.1| - 0.059 14.0 1.4 0.14 12.8 0.0 2.5 3 1 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain TrkA_N PF02254.18 gi|240102635|ref|YP_002958944.1| - 4.2e-20 72.1 1.0 9.9e-20 70.9 0.3 2.0 2 0 0 2 2 2 1 TrkA-N domain DHHA1 PF02272.19 gi|240102635|ref|YP_002958944.1| - 3.4e-14 53.4 5.1 4.4e-14 53.1 0.2 3.1 3 1 1 4 4 4 1 DHHA1 domain DHH PF01368.20 gi|240102635|ref|YP_002958944.1| - 3.9e-10 39.9 0.1 8e-10 38.9 0.1 1.5 1 0 0 1 1 1 1 DHH family ApbA PF02558.16 gi|240102635|ref|YP_002958944.1| - 6.4e-05 22.6 0.5 0.019 14.6 0.0 2.5 1 1 1 2 2 2 2 Ketopantoate reductase PanE/ApbA NmrA PF05368.13 gi|240102635|ref|YP_002958944.1| - 0.00014 21.5 0.2 0.0023 17.5 0.0 2.3 2 0 0 2 2 2 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|240102635|ref|YP_002958944.1| - 0.0011 19.2 0.4 0.0049 17.1 0.3 2.2 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|240102635|ref|YP_002958944.1| - 0.0045 17.4 0.1 0.014 15.8 0.1 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding CbiJ PF02571.14 gi|240102635|ref|YP_002958944.1| - 0.029 13.8 0.1 0.067 12.6 0.1 1.6 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK Shikimate_DH PF01488.20 gi|240102635|ref|YP_002958944.1| - 0.045 13.8 1.3 0.084 12.9 0.3 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|240102635|ref|YP_002958944.1| - 0.078 13.6 5.7 0.42 11.2 1.3 3.4 3 1 1 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|240102635|ref|YP_002958944.1| - 0.12 11.7 0.6 0.24 10.7 0.1 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|240102635|ref|YP_002958944.1| - 0.18 11.3 0.1 0.41 10.2 0.1 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase HU-CCDC81_euk_2 PF18289.1 gi|240102636|ref|YP_002958945.1| - 0.17 12.1 0.2 11 6.2 0.0 2.5 2 0 0 2 2 2 0 CCDC81 eukaryotic HU domain 2 Topo-VIb_trans PF09239.11 gi|240102636|ref|YP_002958945.1| - 1.8 8.4 7.2 0.31 10.9 1.1 2.6 3 0 0 3 3 3 0 Topoisomerase VI B subunit, transducer Na_H_Exchanger PF00999.21 gi|240102637|ref|YP_002958946.1| - 1.1e-30 106.8 38.0 1.4e-30 106.4 38.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family PhoLip_ATPase_C PF16212.5 gi|240102637|ref|YP_002958946.1| - 5.2 6.7 14.3 20 4.8 13.9 2.0 1 1 1 2 2 2 0 Phospholipid-translocating P-type ATPase C-terminal PvlArgDC PF01862.16 gi|240102638|ref|YP_002958947.1| - 1.2e-38 132.5 0.3 1.5e-38 132.2 0.3 1.1 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) ACT_5 PF13710.6 gi|240102639|ref|YP_002958948.1| - 0.0075 16.1 0.1 0.3 10.9 0.0 2.5 2 0 0 2 2 2 1 ACT domain UPF0180 PF03698.13 gi|240102639|ref|YP_002958948.1| - 0.12 12.5 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) Spermine_synth PF01564.17 gi|240102640|ref|YP_002958949.1| - 9.6e-49 165.3 0.0 1.3e-48 165.0 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|240102640|ref|YP_002958949.1| - 9.9e-13 47.8 0.0 1.8e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_30 PF05430.11 gi|240102640|ref|YP_002958949.1| - 0.0048 16.8 0.0 0.0091 15.9 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_25 PF13649.6 gi|240102640|ref|YP_002958949.1| - 0.0058 17.3 0.1 0.02 15.6 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|240102640|ref|YP_002958949.1| - 0.16 12.8 0.0 0.36 11.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|240102640|ref|YP_002958949.1| - 0.17 11.5 1.1 2.6 7.6 0.2 2.4 1 1 1 2 2 2 0 Methionine biosynthesis protein MetW LPG_synthase_TM PF03706.13 gi|240102641|ref|YP_002958950.1| - 5.1e-13 49.2 35.1 2.2e-11 43.9 35.1 2.1 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Creatininase PF02633.14 gi|240102642|ref|YP_002958951.1| - 3.1e-63 213.5 0.0 3.5e-63 213.3 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF2207 PF09972.9 gi|240102643|ref|YP_002958952.1| - 0.059 12.1 0.1 0.071 11.9 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Neurensin PF14927.6 gi|240102643|ref|YP_002958952.1| - 0.059 13.1 0.1 0.09 12.5 0.1 1.4 1 1 0 1 1 1 0 Neurensin Med14 PF08638.11 gi|240102643|ref|YP_002958952.1| - 0.19 11.1 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 Mediator complex subunit MED14 DUF202 PF02656.15 gi|240102643|ref|YP_002958952.1| - 0.2 12.1 3.5 0.32 11.5 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF202) NTPase_I-T PF01931.18 gi|240102644|ref|YP_002958953.1| - 3.4e-52 176.5 0.0 4.4e-52 176.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF84 tRNA-synt_1 PF00133.22 gi|240102645|ref|YP_002958954.1| - 8.5e-190 632.0 10.2 1.2e-189 631.5 10.2 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|240102645|ref|YP_002958954.1| - 2.4e-38 131.5 0.1 5.4e-38 130.3 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|240102645|ref|YP_002958954.1| - 1.4e-25 89.9 5.7 1.7e-08 33.6 0.5 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|240102645|ref|YP_002958954.1| - 5.6e-07 29.2 0.0 0.00019 20.9 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|240102645|ref|YP_002958954.1| - 0.00024 20.2 0.0 0.013 14.4 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|240102645|ref|YP_002958954.1| - 0.0005 19.6 0.0 0.0026 17.3 0.0 2.1 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DUF4720 PF15846.5 gi|240102645|ref|YP_002958954.1| - 0.0049 16.7 0.0 0.96 9.3 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4720) Glyco_trans_2_3 PF13632.6 gi|240102646|ref|YP_002958955.1| - 3.7e-19 69.4 0.0 7.9e-19 68.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|240102646|ref|YP_002958955.1| - 3.2e-12 46.8 0.0 4.3e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Thioredoxin_8 PF13905.6 gi|240102646|ref|YP_002958955.1| - 0.058 13.7 0.3 0.16 12.3 0.3 1.7 1 0 0 1 1 1 0 Thioredoxin-like DUF3970 PF13113.6 gi|240102646|ref|YP_002958955.1| - 0.41 10.9 3.5 0.39 10.9 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3970) VAPB_antitox PF02697.14 gi|240102647|ref|YP_002958956.1| - 2.3e-06 28.3 2.5 2.8e-06 28.0 2.5 1.2 1 0 0 1 1 1 1 Putative antitoxin TM1586_NiRdase PF14512.6 gi|240102647|ref|YP_002958956.1| - 0.0087 15.7 0.1 0.0087 15.7 0.1 1.0 1 0 0 1 1 1 1 Putative TM nitroreductase RIC3 PF15361.6 gi|240102647|ref|YP_002958956.1| - 0.018 15.4 2.1 0.02 15.3 2.1 1.0 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 ATPase_2 PF01637.18 gi|240102648|ref|YP_002958957.1| - 5.9e-24 85.3 0.0 8.3e-24 84.8 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|240102648|ref|YP_002958957.1| - 8e-09 35.6 0.0 2.4e-07 30.9 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|240102648|ref|YP_002958957.1| - 2.3e-07 31.2 0.0 7.6e-07 29.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|240102648|ref|YP_002958957.1| - 4.9e-07 30.3 0.1 7.9e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain TrmB PF01978.19 gi|240102648|ref|YP_002958957.1| - 0.0012 18.7 0.0 0.0032 17.3 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Methyltransf_31 PF13847.6 gi|240102649|ref|YP_002958958.1| - 5e-12 45.9 0.0 6.2e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|240102649|ref|YP_002958958.1| - 4.4e-11 43.4 0.0 6.4e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240102649|ref|YP_002958958.1| - 5.5e-11 43.0 0.0 8.5e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240102649|ref|YP_002958958.1| - 3.8e-09 36.6 0.0 4.6e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|240102649|ref|YP_002958958.1| - 1.3e-06 29.1 0.0 1.9e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|240102649|ref|YP_002958958.1| - 9.1e-06 25.3 0.0 1.2e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|240102649|ref|YP_002958958.1| - 0.00027 20.6 0.0 0.00035 20.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|240102649|ref|YP_002958958.1| - 0.0067 16.4 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain AdoMet_MTase PF07757.13 gi|240102649|ref|YP_002958958.1| - 0.018 15.3 0.7 0.16 12.3 0.0 2.2 2 0 0 2 2 2 0 Predicted AdoMet-dependent methyltransferase TehB PF03848.14 gi|240102649|ref|YP_002958958.1| - 0.082 12.3 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_18 PF12847.7 gi|240102649|ref|YP_002958958.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|240102649|ref|YP_002958958.1| - 0.12 12.1 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_17 PF12692.7 gi|240102649|ref|YP_002958958.1| - 0.21 11.6 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase PIG-L PF02585.17 gi|240102651|ref|YP_002958960.1| - 1.8e-30 106.2 0.0 2.6e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_trans_4_2 PF13477.6 gi|240102651|ref|YP_002958960.1| - 0.03 14.3 0.0 0.12 12.4 0.0 1.9 1 1 0 1 1 1 0 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|240102651|ref|YP_002958960.1| - 0.052 13.6 0.0 0.097 12.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Radical_SAM PF04055.21 gi|240102652|ref|YP_002958961.1| - 5e-13 49.8 0.1 1.9e-12 47.9 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|240102652|ref|YP_002958961.1| - 6.3e-05 23.1 0.0 0.00012 22.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|240102652|ref|YP_002958961.1| - 0.00023 21.4 0.0 0.00072 19.8 0.0 1.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain RNase_P_Rpp14 PF01900.19 gi|240102653|ref|YP_002958962.1| - 9.9e-22 77.1 0.0 1.1e-21 76.9 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family CDC48_N PF02359.18 gi|240102653|ref|YP_002958962.1| - 0.13 12.5 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Glyco_transf_5 PF08323.11 gi|240102654|ref|YP_002958963.1| - 9.3e-36 123.7 0.0 1.4e-35 123.2 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|240102654|ref|YP_002958963.1| - 6.9e-25 87.6 0.0 1.4e-24 86.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|240102654|ref|YP_002958963.1| - 1.3e-23 83.9 0.0 2.2e-23 83.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|240102654|ref|YP_002958963.1| - 6.9e-18 65.2 1.5 2.7e-17 63.3 1.1 2.2 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|240102654|ref|YP_002958963.1| - 1.6e-14 54.7 0.2 5.2e-14 53.0 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|240102654|ref|YP_002958963.1| - 2.3e-05 24.5 0.0 0.0005 20.1 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|240102654|ref|YP_002958963.1| - 0.0012 19.2 0.0 0.0028 18.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.13 gi|240102654|ref|YP_002958963.1| - 0.0051 15.4 0.0 0.98 7.9 0.0 2.9 3 0 0 3 3 3 1 Glycogen synthase Glyco_hydro_65C PF03633.15 gi|240102654|ref|YP_002958963.1| - 0.047 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain Regulator_TrmB PF11495.8 gi|240102655|ref|YP_002958964.1| - 3.7e-54 183.4 0.0 5e-54 183.0 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|240102655|ref|YP_002958964.1| - 6.2e-25 86.9 0.0 1.1e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|240102655|ref|YP_002958964.1| - 0.0073 16.4 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|240102655|ref|YP_002958964.1| - 0.025 14.9 0.0 0.059 13.7 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|240102655|ref|YP_002958964.1| - 0.068 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain CENP-B_N PF04218.13 gi|240102655|ref|YP_002958964.1| - 0.11 12.2 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain LexA_DNA_bind PF01726.16 gi|240102655|ref|YP_002958964.1| - 0.14 11.9 0.0 0.33 10.8 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain Alpha-amylase PF00128.24 gi|240102656|ref|YP_002958965.1| - 3.3e-55 188.0 0.0 4.4e-55 187.6 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 gi|240102656|ref|YP_002958965.1| - 2.4e-05 24.5 0.0 0.00069 19.8 0.0 2.6 2 1 0 2 2 2 1 Alpha amylase, N-terminal ig-like domain AMPK1_CBM PF16561.5 gi|240102656|ref|YP_002958965.1| - 0.00066 19.8 0.0 0.0014 18.8 0.0 1.5 1 0 0 1 1 1 1 Glycogen recognition site of AMP-activated protein kinase DUF3459 PF11941.8 gi|240102656|ref|YP_002958965.1| - 0.079 13.3 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) Malt_amylase_C PF16657.5 gi|240102656|ref|YP_002958965.1| - 0.091 12.9 0.0 0.21 11.7 0.0 1.7 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain SBP_bac_8 PF13416.6 gi|240102657|ref|YP_002958966.1| - 2.3e-51 175.3 6.3 2.3e-51 175.3 6.3 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|240102657|ref|YP_002958966.1| - 3.5e-38 132.3 12.8 5.2e-38 131.7 12.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Mucin PF01456.17 gi|240102657|ref|YP_002958966.1| - 1.3e-06 28.5 31.0 2.4e-06 27.6 31.0 1.3 1 0 0 1 1 1 1 Mucin-like glycoprotein BAT2_N PF07001.11 gi|240102657|ref|YP_002958966.1| - 0.031 14.7 9.8 0.047 14.1 9.8 1.2 1 0 0 1 1 1 0 BAT2 N-terminus Med3 PF11593.8 gi|240102657|ref|YP_002958966.1| - 0.68 9.1 18.4 1 8.4 18.4 1.2 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal DUF515 PF04415.12 gi|240102657|ref|YP_002958966.1| - 1.2 7.5 5.3 1.5 7.1 5.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) DUF4834 PF16118.5 gi|240102657|ref|YP_002958966.1| - 1.2 10.1 4.5 2.9 8.9 4.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4834) SOG2 PF10428.9 gi|240102657|ref|YP_002958966.1| - 1.5 7.9 11.7 2.1 7.5 11.7 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein BPD_transp_1 PF00528.22 gi|240102658|ref|YP_002958967.1| - 7.2e-15 55.2 19.4 7.2e-15 55.2 19.4 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|240102658|ref|YP_002958967.1| - 0.00079 19.5 0.4 0.0019 18.3 0.4 1.6 1 0 0 1 1 1 1 N-terminal of TM subunit in PBP-dependent ABC transporters BPD_transp_1 PF00528.22 gi|240102659|ref|YP_002958968.1| - 3e-16 59.7 15.4 3e-16 59.7 15.4 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SecE PF00584.20 gi|240102659|ref|YP_002958968.1| - 0.049 13.6 0.3 0.049 13.6 0.3 2.9 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex Glucodextran_C PF09985.9 gi|240102660|ref|YP_002958969.1| - 3.4e-147 488.0 1.0 1e-72 244.3 0.1 2.6 2 0 0 2 2 2 2 C-terminal binding-module, SLH-like, of glucodextranase Glyco_hydro_57 PF03065.15 gi|240102660|ref|YP_002958969.1| - 6.2e-105 351.0 3.0 8.9e-105 350.5 3.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Secretin_N PF03958.17 gi|240102660|ref|YP_002958969.1| - 0.0054 17.1 0.9 4.1 7.9 0.0 3.3 3 0 0 3 3 3 2 Bacterial type II/III secretion system short domain MORN PF02493.20 gi|240102660|ref|YP_002958969.1| - 0.17 11.9 3.5 14 5.8 0.4 3.2 2 0 0 2 2 2 0 MORN repeat MYEOV2 PF15004.6 gi|240102660|ref|YP_002958969.1| - 0.17 12.4 0.0 27 5.3 0.0 3.0 2 0 0 2 2 2 0 Myeloma-overexpressed-like ABC_tran PF00005.27 gi|240102661|ref|YP_002958970.1| - 7.1e-32 110.8 0.0 1.2e-31 110.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|240102661|ref|YP_002958970.1| - 3.7e-17 62.9 0.0 1.7e-16 60.8 0.0 2.2 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|240102661|ref|YP_002958970.1| - 9.3e-08 32.1 0.0 2.9e-07 30.5 0.0 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|240102661|ref|YP_002958970.1| - 4.4e-06 26.7 0.0 0.029 14.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240102661|ref|YP_002958970.1| - 0.00011 21.7 0.2 0.001 18.6 0.1 2.3 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 gi|240102661|ref|YP_002958970.1| - 0.00015 22.3 0.0 0.00089 19.8 0.0 2.4 2 0 0 2 2 2 1 CysA C-terminal regulatory domain TOBE PF03459.17 gi|240102661|ref|YP_002958970.1| - 0.0011 19.2 0.1 0.0036 17.6 0.1 1.9 1 1 0 1 1 1 1 TOBE domain AAA_22 PF13401.6 gi|240102661|ref|YP_002958970.1| - 0.0014 18.9 0.2 0.0051 17.1 0.2 2.0 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|240102661|ref|YP_002958970.1| - 0.0023 17.9 0.0 0.0038 17.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|240102661|ref|YP_002958970.1| - 0.0036 17.7 0.0 0.0061 16.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|240102661|ref|YP_002958970.1| - 0.0058 17.0 0.0 0.022 15.2 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Syntaxin PF00804.25 gi|240102661|ref|YP_002958970.1| - 0.0059 16.3 0.3 0.012 15.3 0.1 1.5 2 0 0 2 2 2 1 Syntaxin AAA_30 PF13604.6 gi|240102661|ref|YP_002958970.1| - 0.03 14.0 0.1 0.071 12.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|240102661|ref|YP_002958970.1| - 0.034 13.7 0.0 0.51 9.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|240102661|ref|YP_002958970.1| - 0.054 13.4 0.1 0.12 12.2 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_29 PF13555.6 gi|240102661|ref|YP_002958970.1| - 0.07 12.9 0.0 0.3 10.8 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|240102661|ref|YP_002958970.1| - 0.13 12.6 0.1 0.29 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|240102661|ref|YP_002958970.1| - 0.15 12.0 0.1 0.34 10.8 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|240102661|ref|YP_002958970.1| - 0.18 12.0 0.2 0.52 10.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|240102661|ref|YP_002958970.1| - 0.23 10.6 0.0 0.38 9.8 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit UPF0146 PF03686.13 gi|240102662|ref|YP_002958971.1| - 1.4e-31 109.1 0.0 1.5e-31 109.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) TehB PF03848.14 gi|240102662|ref|YP_002958971.1| - 0.0025 17.3 0.0 0.0042 16.5 0.0 1.3 2 0 0 2 2 2 1 Tellurite resistance protein TehB TrkA_N PF02254.18 gi|240102662|ref|YP_002958971.1| - 0.018 15.3 0.0 0.026 14.8 0.0 1.2 1 0 0 1 1 1 0 TrkA-N domain PGM_PMM_I PF02878.16 gi|240102663|ref|YP_002958972.1| - 2.9e-39 133.9 0.0 5.1e-39 133.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|240102663|ref|YP_002958972.1| - 1.8e-25 89.5 0.1 4.2e-25 88.3 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|240102663|ref|YP_002958972.1| - 9.5e-13 48.1 0.1 7.4e-12 45.3 0.1 2.4 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|240102663|ref|YP_002958972.1| - 9.1e-09 35.5 0.0 2e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Lactamase_B_2 PF12706.7 gi|240102664|ref|YP_002958973.1| - 2.5e-27 95.7 0.2 3.2e-27 95.4 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|240102664|ref|YP_002958973.1| - 1.6e-07 31.4 0.0 3.6e-07 30.2 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|240102664|ref|YP_002958973.1| - 1.8e-05 24.9 0.5 0.00017 21.7 0.5 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Peptidase_M20 PF01546.28 gi|240102665|ref|YP_002958974.1| - 3.5e-38 131.4 0.1 4.3e-38 131.1 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|240102665|ref|YP_002958974.1| - 7.9e-22 77.2 0.0 2.5e-21 75.7 0.0 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|240102665|ref|YP_002958974.1| - 1.5e-05 24.8 0.0 2.9e-05 23.8 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M28 Serpin PF00079.20 gi|240102666|ref|YP_002958975.1| - 5.3e-115 384.7 0.0 6e-115 384.5 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) Methyltransf_10 PF05971.12 gi|240102667|ref|YP_002958976.1| - 2.2e-10 40.4 0.0 7.4e-10 38.6 0.0 1.7 1 1 0 1 1 1 1 RNA methyltransferase MTS PF05175.14 gi|240102667|ref|YP_002958976.1| - 1.9e-07 30.8 0.0 2.6e-05 23.9 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|240102667|ref|YP_002958976.1| - 1.5e-06 28.8 0.0 5.4e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|240102667|ref|YP_002958976.1| - 1.6e-05 24.8 0.0 2e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|240102667|ref|YP_002958976.1| - 1.7e-05 24.4 0.0 2.4e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|240102667|ref|YP_002958976.1| - 0.00048 19.9 0.0 0.00071 19.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|240102667|ref|YP_002958976.1| - 0.0017 19.0 0.0 0.013 16.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|240102667|ref|YP_002958976.1| - 0.005 17.5 0.0 0.016 16.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|240102667|ref|YP_002958976.1| - 0.0051 16.1 0.0 0.0078 15.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|240102667|ref|YP_002958976.1| - 0.0063 16.4 0.0 0.0085 16.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|240102667|ref|YP_002958976.1| - 0.015 14.3 0.0 0.023 13.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|240102667|ref|YP_002958976.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|240102667|ref|YP_002958976.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Cons_hypoth95 PF03602.15 gi|240102667|ref|YP_002958976.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PNP_UDP_1 PF01048.20 gi|240102668|ref|YP_002958977.1| - 4.6e-28 98.1 0.0 5.4e-28 97.8 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Methyltrans_SAM PF10672.9 gi|240102669|ref|YP_002958978.1| - 1.6e-21 76.8 0.0 2.5e-21 76.1 0.0 1.3 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Met_10 PF02475.16 gi|240102669|ref|YP_002958978.1| - 2.8e-19 69.6 0.3 5.1e-19 68.8 0.3 1.4 1 0 0 1 1 1 1 Met-10+ like-protein PUA_3 PF17785.1 gi|240102669|ref|YP_002958978.1| - 3.7e-17 61.9 0.1 8.1e-17 60.8 0.1 1.6 1 0 0 1 1 1 1 PUA-like domain PUA PF01472.20 gi|240102669|ref|YP_002958978.1| - 5.6e-15 55.1 0.2 1.4e-14 53.8 0.2 1.7 1 0 0 1 1 1 1 PUA domain Cons_hypoth95 PF03602.15 gi|240102669|ref|YP_002958978.1| - 8.6e-14 51.6 0.0 1.7e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|240102669|ref|YP_002958978.1| - 2e-11 43.9 0.0 3.4e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|240102669|ref|YP_002958978.1| - 9.5e-10 38.5 0.0 1.8e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|240102669|ref|YP_002958978.1| - 2.5e-09 36.9 0.0 4.7e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_3 PF01596.17 gi|240102669|ref|YP_002958978.1| - 6.6e-08 32.0 0.1 2e-07 30.4 0.1 1.7 1 1 0 1 1 1 1 O-methyltransferase TRM PF02005.16 gi|240102669|ref|YP_002958978.1| - 1.4e-07 31.0 0.0 2.1e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_25 PF13649.6 gi|240102669|ref|YP_002958978.1| - 1.2e-06 29.1 0.0 2.8e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|240102669|ref|YP_002958978.1| - 9.1e-06 25.3 0.0 1.6e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|240102669|ref|YP_002958978.1| - 1.7e-05 24.6 0.0 0.00044 19.9 0.0 2.2 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F FtsJ PF01728.19 gi|240102669|ref|YP_002958978.1| - 0.0008 19.6 0.0 0.0014 18.8 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|240102669|ref|YP_002958978.1| - 0.00084 19.2 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|240102669|ref|YP_002958978.1| - 0.0025 17.5 0.0 0.22 11.2 0.0 2.8 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 gi|240102669|ref|YP_002958978.1| - 0.02 14.9 0.0 0.04 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.17 gi|240102669|ref|YP_002958978.1| - 0.062 12.6 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_11 PF08241.12 gi|240102669|ref|YP_002958978.1| - 0.065 13.9 0.0 0.16 12.6 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain TctA PF01970.16 gi|240102671|ref|YP_002958980.1| - 1.9e-43 148.7 27.6 2.5e-43 148.4 27.6 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family ATPase PF06745.13 gi|240102673|ref|YP_002958982.1| - 4.9e-32 111.1 0.0 1.8e-31 109.3 0.0 1.7 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|240102673|ref|YP_002958982.1| - 0.00019 21.1 0.0 0.00037 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|240102673|ref|YP_002958982.1| - 0.0013 17.9 0.0 0.11 11.6 0.0 2.0 2 0 0 2 2 2 1 PAXNEB protein Rad51 PF08423.11 gi|240102673|ref|YP_002958982.1| - 0.0045 16.3 0.0 0.014 14.7 0.0 1.7 2 0 0 2 2 2 1 Rad51 DUF835 PF05763.12 gi|240102673|ref|YP_002958982.1| - 0.014 15.1 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF835) G-alpha PF00503.20 gi|240102673|ref|YP_002958982.1| - 0.059 12.5 0.0 0.067 12.3 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit RecA PF00154.21 gi|240102673|ref|YP_002958982.1| - 0.087 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein FtsK_SpoIIIE PF01580.18 gi|240102673|ref|YP_002958982.1| - 0.14 11.5 0.5 1.2 8.4 0.1 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|240102673|ref|YP_002958982.1| - 0.14 11.8 0.1 0.55 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain GvpD PF07088.11 gi|240102673|ref|YP_002958982.1| - 0.16 10.5 0.2 3.3 6.2 0.1 2.0 2 0 0 2 2 2 0 GvpD gas vesicle protein Roc PF08477.13 gi|240102673|ref|YP_002958982.1| - 0.18 12.1 0.0 0.46 10.7 0.0 1.7 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ATPase PF06745.13 gi|240102674|ref|YP_002958983.1| - 4.2e-78 261.9 0.3 4.7e-78 261.7 0.3 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|240102674|ref|YP_002958983.1| - 1.1e-11 44.7 0.0 1.5e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|240102674|ref|YP_002958983.1| - 1e-10 40.9 0.2 1.5e-10 40.4 0.2 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|240102674|ref|YP_002958983.1| - 1.1e-05 24.9 0.0 1.5e-05 24.4 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|240102674|ref|YP_002958983.1| - 0.00018 21.8 0.0 0.00037 20.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|240102674|ref|YP_002958983.1| - 0.00038 19.6 0.1 0.00065 18.8 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein RecA PF00154.21 gi|240102674|ref|YP_002958983.1| - 0.00079 19.0 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|240102674|ref|YP_002958983.1| - 0.0011 18.3 0.0 0.002 17.5 0.0 1.4 1 0 0 1 1 1 1 Rad51 AAA_14 PF13173.6 gi|240102674|ref|YP_002958983.1| - 0.0027 17.8 0.0 0.0064 16.5 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|240102674|ref|YP_002958983.1| - 0.0036 17.9 0.1 0.011 16.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|240102674|ref|YP_002958983.1| - 0.0046 16.7 0.0 0.012 15.3 0.0 1.6 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|240102674|ref|YP_002958983.1| - 0.0079 16.6 0.0 0.0099 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|240102674|ref|YP_002958983.1| - 0.0079 15.9 0.3 0.012 15.4 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|240102674|ref|YP_002958983.1| - 0.0095 16.3 0.1 0.012 15.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|240102674|ref|YP_002958983.1| - 0.012 15.8 0.0 0.025 14.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|240102674|ref|YP_002958983.1| - 0.017 14.6 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|240102674|ref|YP_002958983.1| - 0.021 14.8 0.0 0.068 13.1 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_29 PF13555.6 gi|240102674|ref|YP_002958983.1| - 0.022 14.5 0.1 0.083 12.6 0.2 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|240102674|ref|YP_002958983.1| - 0.028 14.1 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|240102674|ref|YP_002958983.1| - 0.052 13.6 0.2 0.23 11.5 0.2 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|240102674|ref|YP_002958983.1| - 0.056 12.9 0.1 0.1 12.0 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.15 gi|240102674|ref|YP_002958983.1| - 0.058 13.4 0.1 0.077 13.0 0.1 1.4 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_28 PF13521.6 gi|240102674|ref|YP_002958983.1| - 0.067 13.4 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|240102674|ref|YP_002958983.1| - 0.071 13.5 0.0 0.14 12.6 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) DEAD PF00270.29 gi|240102674|ref|YP_002958983.1| - 0.073 12.8 0.5 0.086 12.6 0.5 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|240102674|ref|YP_002958983.1| - 0.075 13.5 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter DUF2075 PF09848.9 gi|240102674|ref|YP_002958983.1| - 0.08 12.2 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TIP49 PF06068.13 gi|240102674|ref|YP_002958983.1| - 0.083 12.1 1.7 0.41 9.8 0.0 2.6 3 1 0 3 3 3 0 TIP49 P-loop domain NTPase_1 PF03266.15 gi|240102674|ref|YP_002958983.1| - 0.084 12.8 0.1 0.21 11.5 0.0 1.8 2 0 0 2 2 2 0 NTPase TsaE PF02367.17 gi|240102674|ref|YP_002958983.1| - 0.16 12.0 0.1 0.72 9.9 0.1 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PAXNEB PF05625.11 gi|240102674|ref|YP_002958983.1| - 0.17 11.0 0.1 0.34 10.0 0.1 1.4 1 0 0 1 1 1 0 PAXNEB protein AAA_23 PF13476.6 gi|240102674|ref|YP_002958983.1| - 0.68 10.4 2.2 1.8 9.0 2.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_12 PF13087.6 gi|240102675|ref|YP_002958984.1| - 1.6e-56 191.1 0.0 2.4e-56 190.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|240102675|ref|YP_002958984.1| - 2.6e-56 191.3 0.0 1.5e-55 188.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|240102675|ref|YP_002958984.1| - 1e-13 51.4 0.0 2.4e-10 40.4 0.1 3.4 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|240102675|ref|YP_002958984.1| - 1.4e-08 34.8 0.0 0.017 14.9 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|240102675|ref|YP_002958984.1| - 2.2e-07 31.3 0.0 1.4e-06 28.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain PIF1 PF05970.14 gi|240102675|ref|YP_002958984.1| - 3.8e-05 23.0 0.0 0.0067 15.6 0.0 2.2 2 0 0 2 2 2 2 PIF1-like helicase AAA_16 PF13191.6 gi|240102675|ref|YP_002958984.1| - 0.0024 18.3 0.3 0.012 16.0 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|240102675|ref|YP_002958984.1| - 0.0032 17.8 0.2 0.018 15.3 0.1 2.5 2 1 0 2 2 2 1 AAA domain UvrD-helicase PF00580.21 gi|240102675|ref|YP_002958984.1| - 0.02 14.4 0.0 0.057 12.9 0.0 1.7 1 1 0 1 1 1 0 UvrD/REP helicase N-terminal domain T2SSE PF00437.20 gi|240102675|ref|YP_002958984.1| - 0.021 13.9 0.0 0.051 12.6 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein Helicase_RecD PF05127.14 gi|240102675|ref|YP_002958984.1| - 0.025 14.4 0.1 1.5 8.6 0.0 2.4 2 0 0 2 2 2 0 Helicase ResIII PF04851.15 gi|240102675|ref|YP_002958984.1| - 0.045 13.8 0.0 0.24 11.4 0.0 2.1 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|240102675|ref|YP_002958984.1| - 0.047 12.6 0.0 0.082 11.8 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Flavi_DEAD PF07652.14 gi|240102675|ref|YP_002958984.1| - 0.057 13.4 0.1 1.4 8.9 0.0 2.3 2 0 0 2 2 2 0 Flavivirus DEAD domain cobW PF02492.19 gi|240102675|ref|YP_002958984.1| - 0.089 12.4 0.0 5 6.7 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain UvrD_C_2 PF13538.6 gi|240102675|ref|YP_002958984.1| - 0.13 12.1 0.0 0.33 10.8 0.0 1.7 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain FAD_binding_2 PF00890.24 gi|240102677|ref|YP_002958986.1| - 5.8e-67 226.6 0.1 7.1e-67 226.3 0.1 1.0 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|240102677|ref|YP_002958986.1| - 6.4e-11 42.3 0.2 7.3e-06 26.0 0.1 2.5 1 1 1 2 2 2 2 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|240102677|ref|YP_002958986.1| - 1.9e-09 37.2 0.1 4.5e-05 22.8 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|240102677|ref|YP_002958986.1| - 1.2e-06 28.3 1.6 0.0055 16.3 0.4 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|240102677|ref|YP_002958986.1| - 0.00032 19.5 0.3 0.18 10.5 0.0 2.4 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.22 gi|240102677|ref|YP_002958986.1| - 0.00038 19.6 0.2 0.00087 18.5 0.2 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|240102677|ref|YP_002958986.1| - 0.0014 18.8 0.4 0.0041 17.3 0.4 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|240102677|ref|YP_002958986.1| - 0.079 13.5 0.5 0.84 10.2 0.2 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|240102677|ref|YP_002958986.1| - 0.17 11.5 0.3 0.29 10.7 0.3 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NadA PF02445.16 gi|240102678|ref|YP_002958987.1| - 1.8e-111 372.1 0.5 2.1e-111 371.9 0.5 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sua5_yciO_yrdC PF01300.18 gi|240102678|ref|YP_002958987.1| - 0.0002 20.9 0.2 0.00044 19.8 0.1 1.6 1 1 0 1 1 1 1 Telomere recombination DUF308 PF03729.13 gi|240102679|ref|YP_002958988.1| - 9e-20 70.8 28.9 2.8e-12 46.8 10.7 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF5336 PF17270.2 gi|240102679|ref|YP_002958988.1| - 2.8 7.5 16.8 2.6 7.7 7.0 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5336) SLATT_6 PF18169.1 gi|240102679|ref|YP_002958988.1| - 3.3 7.3 5.8 3.8 7.1 0.3 2.1 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 6 DUF2070 PF09843.9 gi|240102679|ref|YP_002958988.1| - 6.5 4.9 13.3 7.7 4.7 13.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) NTP_transferase PF00483.23 gi|240102680|ref|YP_002958989.1| - 2e-39 135.7 0.0 2.6e-39 135.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|240102680|ref|YP_002958989.1| - 4.8e-07 29.2 14.0 0.00036 20.1 4.6 4.3 1 1 2 3 3 3 3 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 gi|240102680|ref|YP_002958989.1| - 0.0001 20.6 1.2 0.00014 20.2 1.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|240102680|ref|YP_002958989.1| - 0.00022 20.3 0.0 0.004 16.2 0.1 2.0 2 0 0 2 2 2 1 L-fucokinase NTP_transf_3 PF12804.7 gi|240102680|ref|YP_002958989.1| - 0.055 13.8 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|240102680|ref|YP_002958989.1| - 0.25 11.1 7.1 1.5 8.7 0.8 3.5 1 1 2 3 3 3 0 Hexapeptide repeat of succinyl-transferase QRPTase_C PF01729.19 gi|240102681|ref|YP_002958990.1| - 1.6e-48 164.7 0.2 2e-48 164.4 0.2 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|240102681|ref|YP_002958990.1| - 7e-32 109.3 0.1 1.3e-31 108.4 0.1 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain B12-binding PF02310.19 gi|240102681|ref|YP_002958990.1| - 1.4e-05 25.1 3.1 0.0015 18.6 0.2 3.4 2 1 2 4 4 4 1 B12 binding domain PRAI PF00697.22 gi|240102681|ref|YP_002958990.1| - 0.00092 19.0 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Biotin_lipoyl PF00364.22 gi|240102681|ref|YP_002958990.1| - 0.0033 17.2 0.5 0.2 11.5 0.0 2.5 2 0 0 2 2 2 1 Biotin-requiring enzyme Radical_SAM PF04055.21 gi|240102681|ref|YP_002958990.1| - 0.021 15.2 0.0 0.1 12.9 0.0 2.2 1 1 0 1 1 1 0 Radical SAM superfamily Ribul_P_3_epim PF00834.19 gi|240102681|ref|YP_002958990.1| - 0.029 13.7 0.1 0.073 12.5 0.0 1.6 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.17 gi|240102681|ref|YP_002958990.1| - 0.059 12.7 0.0 0.14 11.5 0.0 1.6 1 1 0 1 1 1 0 Thiamine monophosphate synthase Biotin_lipoyl_2 PF13533.6 gi|240102681|ref|YP_002958990.1| - 0.062 13.1 0.7 0.15 11.9 0.0 2.0 2 0 0 2 2 2 0 Biotin-lipoyl like DUF3783 PF12646.7 gi|240102681|ref|YP_002958990.1| - 0.094 12.7 0.0 0.27 11.2 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3783) DUF5010 PF16402.5 gi|240102681|ref|YP_002958990.1| - 0.18 10.6 0.0 0.26 10.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5010) SwrA PF17423.2 gi|240102682|ref|YP_002958991.1| - 0.16 12.0 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Swarming motility protein CBM_48 PF02922.18 gi|240102684|ref|YP_002958993.1| - 0.079 13.3 0.0 0.74 10.2 0.0 2.1 2 0 0 2 2 2 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ABC_tran PF00005.27 gi|240102685|ref|YP_002958994.1| - 2.9e-24 86.1 0.0 4.3e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240102685|ref|YP_002958994.1| - 7.4e-11 42.4 0.4 2.2e-05 24.4 0.8 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|240102685|ref|YP_002958994.1| - 1.9e-09 38.3 0.1 2.2e-09 38.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|240102685|ref|YP_002958994.1| - 7e-06 25.6 0.5 0.0018 17.7 0.3 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|240102685|ref|YP_002958994.1| - 0.00035 20.4 1.8 0.00063 19.6 0.9 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|240102685|ref|YP_002958994.1| - 0.0013 18.4 0.1 0.0025 17.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain P2_N PF18628.1 gi|240102685|ref|YP_002958994.1| - 0.0054 16.5 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Viral coat protein P2 N-terminal domain RsgA_GTPase PF03193.16 gi|240102685|ref|YP_002958994.1| - 0.0065 16.4 0.2 0.022 14.7 0.1 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA PF00004.29 gi|240102685|ref|YP_002958994.1| - 0.013 15.9 1.2 0.14 12.6 1.2 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|240102685|ref|YP_002958994.1| - 0.016 15.2 0.5 0.92 9.4 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|240102685|ref|YP_002958994.1| - 0.023 14.9 0.1 0.059 13.6 0.1 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.15 gi|240102685|ref|YP_002958994.1| - 0.03 14.2 0.3 0.11 12.4 0.0 1.9 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|240102685|ref|YP_002958994.1| - 0.044 14.3 1.1 0.33 11.5 1.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|240102685|ref|YP_002958994.1| - 0.079 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|240102685|ref|YP_002958994.1| - 0.12 12.6 0.0 0.22 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|240102685|ref|YP_002958994.1| - 0.14 11.9 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|240102685|ref|YP_002958994.1| - 0.15 11.7 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|240102685|ref|YP_002958994.1| - 0.24 10.0 0.7 0.36 9.4 0.1 1.5 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|240102685|ref|YP_002958994.1| - 0.26 11.0 1.2 0.34 10.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain SOR_SNZ PF01680.17 gi|240102686|ref|YP_002958995.1| - 9.5e-98 326.0 5.7 1.2e-94 315.9 4.9 2.3 1 1 1 2 2 2 2 SOR/SNZ family ThiG PF05690.14 gi|240102686|ref|YP_002958995.1| - 3.9e-11 42.7 4.3 2.4e-08 33.6 0.1 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|240102686|ref|YP_002958995.1| - 0.00016 20.9 1.5 0.3 10.2 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|240102686|ref|YP_002958995.1| - 0.0095 15.1 3.0 0.07 12.3 0.0 2.7 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|240102686|ref|YP_002958995.1| - 0.011 15.2 4.9 0.15 11.4 0.0 2.6 2 1 0 2 2 2 0 Nitronate monooxygenase IGPS PF00218.21 gi|240102686|ref|YP_002958995.1| - 0.013 14.6 0.2 0.59 9.2 0.0 2.4 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|240102686|ref|YP_002958995.1| - 0.034 13.2 0.6 0.39 9.7 0.0 2.3 2 1 0 2 2 2 0 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|240102686|ref|YP_002958995.1| - 0.087 12.3 0.6 0.73 9.3 0.0 2.2 2 0 0 2 2 2 0 Histidine biosynthesis protein Peptidase_S66C PF17676.1 gi|240102686|ref|YP_002958995.1| - 0.095 13.2 0.0 0.22 12.1 0.0 1.7 1 0 0 1 1 1 0 LD-carboxypeptidase C-terminal domain SNO PF01174.19 gi|240102687|ref|YP_002958996.1| - 1.4e-58 197.9 0.0 1.6e-58 197.7 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|240102687|ref|YP_002958996.1| - 9.7e-11 41.6 0.0 1.4e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|240102687|ref|YP_002958996.1| - 5.6e-08 32.8 0.0 1.2e-07 31.7 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|240102687|ref|YP_002958996.1| - 1.1e-07 31.8 0.0 1.4e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|240102687|ref|YP_002958996.1| - 0.004 17.0 0.0 0.0063 16.3 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Molybdopterin PF00384.22 gi|240102688|ref|YP_002958997.1| - 5.1e-89 299.2 0.0 6e-89 299.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|240102688|ref|YP_002958997.1| - 2.6e-23 82.1 0.0 5e-23 81.2 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|240102688|ref|YP_002958997.1| - 1e-07 31.8 0.2 1.9e-07 31.0 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|240102688|ref|YP_002958997.1| - 0.063 13.5 0.0 0.18 12.0 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain HEPN PF05168.14 gi|240102689|ref|YP_002958998.1| - 0.00079 19.5 0.3 0.0011 19.1 0.3 1.4 1 1 0 1 1 1 1 HEPN domain TSC22 PF01166.18 gi|240102689|ref|YP_002958998.1| - 0.0032 17.8 0.1 0.006 16.9 0.1 1.5 1 0 0 1 1 1 1 TSC-22/dip/bun family HEPN_AbiV PF18728.1 gi|240102689|ref|YP_002958998.1| - 0.0045 17.2 0.9 0.007 16.5 0.9 1.7 1 1 0 1 1 1 1 AbiV DUF357 PF04010.13 gi|240102689|ref|YP_002958998.1| - 0.023 14.8 0.4 0.048 13.7 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF357) PaREP1 PF05942.11 gi|240102689|ref|YP_002958998.1| - 0.036 14.0 0.0 0.047 13.6 0.0 1.1 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family Polbeta PF18765.1 gi|240102690|ref|YP_002958999.1| - 4.4e-08 33.1 0.0 6.5e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|240102690|ref|YP_002958999.1| - 0.0045 17.3 0.0 0.0078 16.5 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain GATase_7 PF13537.6 gi|240102691|ref|YP_002959000.1| - 1.4e-18 66.9 0.0 2.7e-18 66.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|240102691|ref|YP_002959000.1| - 1.7e-16 60.7 0.0 3.3e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|240102691|ref|YP_002959000.1| - 5e-10 39.1 0.2 8.2e-10 38.4 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|240102691|ref|YP_002959000.1| - 4.8e-08 32.2 0.0 7.8e-08 31.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II PRTase_2 PF15609.6 gi|240102691|ref|YP_002959000.1| - 0.03 13.8 0.2 0.066 12.7 0.0 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase SAICAR_synt PF01259.18 gi|240102692|ref|YP_002959001.1| - 4.3e-68 229.6 0.0 4.8e-68 229.5 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase AIRS_C PF02769.22 gi|240102694|ref|YP_002959003.1| - 5.1e-24 85.2 0.0 9.6e-24 84.3 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|240102694|ref|YP_002959003.1| - 6e-19 68.5 1.6 1e-18 67.8 1.6 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain ATP-grasp PF02222.22 gi|240102695|ref|YP_002959004.1| - 1.3e-55 187.6 0.0 2.3e-55 186.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|240102695|ref|YP_002959004.1| - 1.6e-08 34.4 0.0 2.4e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|240102695|ref|YP_002959004.1| - 1.7e-08 34.3 0.0 2.6e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain 2-Hacid_dh_C PF02826.19 gi|240102695|ref|YP_002959004.1| - 0.00016 21.1 0.0 0.00035 20.0 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|240102695|ref|YP_002959004.1| - 0.0012 18.4 0.0 0.0022 17.5 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GARS_A PF01071.19 gi|240102695|ref|YP_002959004.1| - 0.0012 18.6 0.1 0.0031 17.3 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 gi|240102695|ref|YP_002959004.1| - 0.054 13.5 0.0 0.095 12.7 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain PurK_C PF17769.1 gi|240102695|ref|YP_002959004.1| - 0.068 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylaminoimidazole carboxylase C-terminal domain Sec61_beta PF03911.16 gi|240102696|ref|YP_002959005.1| - 2.7e-15 56.1 0.4 3.1e-15 55.9 0.4 1.1 1 0 0 1 1 1 1 Sec61beta family TBPIP_N PF15517.6 gi|240102697|ref|YP_002959006.1| - 2.2e-39 133.5 1.4 2.7e-39 133.2 0.3 1.7 2 0 0 2 2 2 1 TBP-interacting protein N-terminus zf_UBZ PF18439.1 gi|240102697|ref|YP_002959006.1| - 0.0091 15.6 0.1 0.0091 15.6 0.1 1.7 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf-C2H2 PF00096.26 gi|240102697|ref|YP_002959006.1| - 0.019 15.4 0.2 0.043 14.3 0.2 1.7 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf_C2H2_13 PF18508.1 gi|240102697|ref|YP_002959006.1| - 0.058 13.0 0.1 0.13 11.9 0.1 1.6 1 0 0 1 1 1 0 Zinc finger domain Desulfoferrod_N PF06397.12 gi|240102697|ref|YP_002959006.1| - 0.091 12.4 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain DUF835 PF05763.12 gi|240102698|ref|YP_002959007.1| - 1.1e-30 106.1 0.0 1.5e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Corona_M PF01635.18 gi|240102698|ref|YP_002959007.1| - 0.34 10.2 6.4 0.64 9.3 6.4 1.4 1 0 0 1 1 1 0 Coronavirus M matrix/glycoprotein NTP_transferase PF00483.23 gi|240102699|ref|YP_002959008.1| - 1.9e-40 139.0 0.0 2.5e-40 138.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|240102699|ref|YP_002959008.1| - 1.6e-19 68.8 28.1 5.2e-09 35.5 1.5 4.8 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|240102699|ref|YP_002959008.1| - 7.9e-18 65.3 0.0 1.1e-17 64.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|240102699|ref|YP_002959008.1| - 3.2e-10 39.6 18.2 2e-07 30.6 0.5 4.7 4 1 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|240102699|ref|YP_002959008.1| - 2.3e-05 24.3 0.0 4.2e-05 23.4 0.0 1.5 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|240102699|ref|YP_002959008.1| - 0.0053 16.6 0.0 0.0096 15.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF4954 PF16314.5 gi|240102699|ref|YP_002959008.1| - 0.14 10.3 0.7 0.23 9.5 0.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Glyco_tranf_2_3 PF13641.6 gi|240102699|ref|YP_002959008.1| - 0.16 11.8 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 BacA PF02673.18 gi|240102700|ref|YP_002959009.1| - 1.1e-12 48.3 5.9 1.6e-12 47.7 5.9 1.3 1 1 0 1 1 1 1 Bacitracin resistance protein BacA NOG1_N PF17835.1 gi|240102702|ref|YP_002959011.1| - 6.3e-55 185.5 1.7 1e-54 184.8 0.8 1.8 2 0 0 2 2 2 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|240102702|ref|YP_002959011.1| - 1.5e-23 82.3 0.0 3.3e-23 81.2 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|240102702|ref|YP_002959011.1| - 4.9e-22 78.2 0.0 1.1e-21 77.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|240102702|ref|YP_002959011.1| - 1.5e-19 70.0 0.0 2.3e-19 69.4 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|240102702|ref|YP_002959011.1| - 3.7e-09 36.7 0.0 0.0011 19.0 0.0 2.8 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|240102702|ref|YP_002959011.1| - 2.3e-06 27.3 0.2 0.1 12.1 0.1 3.2 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain PduV-EutP PF10662.9 gi|240102702|ref|YP_002959011.1| - 4.7e-06 26.4 0.0 1.5e-05 24.8 0.0 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Ras PF00071.22 gi|240102702|ref|YP_002959011.1| - 3.9e-05 23.3 0.0 0.00021 20.9 0.0 2.0 1 1 0 1 1 1 1 Ras family Arf PF00025.21 gi|240102702|ref|YP_002959011.1| - 4.5e-05 23.0 0.0 0.00046 19.7 0.0 2.2 1 1 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1_Xtn PF16897.5 gi|240102702|ref|YP_002959011.1| - 0.00022 21.2 0.0 0.00077 19.4 0.0 2.0 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain ATP_bind_1 PF03029.17 gi|240102702|ref|YP_002959011.1| - 0.0032 17.3 0.0 0.19 11.5 0.0 2.3 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|240102702|ref|YP_002959011.1| - 0.0039 17.6 0.0 0.014 15.7 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|240102702|ref|YP_002959011.1| - 0.012 16.2 0.0 0.032 14.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|240102702|ref|YP_002959011.1| - 0.012 15.2 0.0 4.4 6.8 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|240102702|ref|YP_002959011.1| - 0.017 15.2 0.0 6.5 6.8 0.0 2.5 1 1 1 2 2 2 0 Dynamin family MeaB PF03308.16 gi|240102702|ref|YP_002959011.1| - 0.019 14.0 0.0 3.2 6.7 0.0 2.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|240102702|ref|YP_002959011.1| - 0.039 14.2 0.0 0.13 12.5 0.0 2.1 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|240102702|ref|YP_002959011.1| - 0.086 12.3 0.0 0.2 11.1 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_28 PF13521.6 gi|240102702|ref|YP_002959011.1| - 0.091 13.0 0.1 0.27 11.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain Roc PF08477.13 gi|240102702|ref|YP_002959011.1| - 0.093 13.0 0.0 0.64 10.3 0.0 2.1 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase FTHFS PF01268.19 gi|240102702|ref|YP_002959011.1| - 0.097 10.9 0.0 0.14 10.3 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Porin_5 PF16930.5 gi|240102702|ref|YP_002959011.1| - 0.16 10.4 0.1 0.25 9.8 0.1 1.2 1 0 0 1 1 1 0 Putative porin MnmE_helical PF12631.7 gi|240102702|ref|YP_002959011.1| - 0.17 12.0 0.0 0.3 11.2 0.0 1.4 1 1 0 1 1 1 0 MnmE helical domain AAA_29 PF13555.6 gi|240102702|ref|YP_002959011.1| - 0.2 11.5 0.0 0.45 10.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Phage_int_SAM_2 PF12834.7 gi|240102702|ref|YP_002959011.1| - 0.66 10.7 2.3 1.4 9.7 0.0 2.6 3 1 1 4 4 3 0 Phage integrase, N-terminal Ribosomal_S8e PF01201.22 gi|240102703|ref|YP_002959012.1| - 5.1e-35 120.6 3.6 5.7e-35 120.5 3.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Sigma70_r3 PF04539.16 gi|240102703|ref|YP_002959012.1| - 0.13 12.3 0.6 0.21 11.7 0.6 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 DEAD PF00270.29 gi|240102704|ref|YP_002959013.1| - 3.2e-25 88.9 0.0 1.2e-24 87.0 0.0 2.0 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|240102704|ref|YP_002959013.1| - 1.5e-14 54.2 0.0 4.2e-14 52.8 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|240102704|ref|YP_002959013.1| - 2.6e-07 30.8 0.0 5.5e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|240102704|ref|YP_002959013.1| - 0.014 14.1 0.0 0.061 12.0 0.0 1.7 2 1 0 2 2 2 0 SNF2 family N-terminal domain DUF63 PF01889.17 gi|240102705|ref|YP_002959014.1| - 4.6e-75 253.3 14.8 5.2e-75 253.1 14.8 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF996 PF06195.13 gi|240102706|ref|YP_002959015.1| - 1.5e-22 80.3 17.2 1.5e-22 80.3 17.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF898 PF05987.13 gi|240102706|ref|YP_002959015.1| - 0.0017 17.5 2.6 0.0017 17.5 2.6 1.6 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF898) Trp_oprn_chp PF09534.10 gi|240102706|ref|YP_002959015.1| - 0.0033 17.3 9.6 0.13 12.1 0.0 2.8 2 1 0 2 2 2 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Bac_export_2 PF01312.19 gi|240102706|ref|YP_002959015.1| - 0.025 13.8 5.3 0.032 13.5 5.3 1.1 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family DUF5079 PF16882.5 gi|240102706|ref|YP_002959015.1| - 0.054 13.4 4.5 1.2 9.0 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5079) FtsX PF02687.21 gi|240102706|ref|YP_002959015.1| - 0.54 10.8 24.0 2.5 8.6 8.9 2.5 2 1 0 2 2 2 0 FtsX-like permease family Saf_2TM PF18303.1 gi|240102706|ref|YP_002959015.1| - 0.79 9.3 15.4 0.021 14.4 3.2 2.4 2 1 0 2 2 2 0 SAVED-fused 2TM effector domain DUF1418 PF07214.12 gi|240102706|ref|YP_002959015.1| - 1 9.3 11.5 0.73 9.7 2.7 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1418) Colicin_V PF02674.16 gi|240102706|ref|YP_002959015.1| - 2.5 8.1 21.4 1.1 9.2 7.1 2.4 2 0 0 2 2 2 0 Colicin V production protein DUF3098 PF11297.8 gi|240102706|ref|YP_002959015.1| - 5.3 6.7 18.1 4.4 7.0 1.8 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF3098) DUF2207 PF09972.9 gi|240102706|ref|YP_002959015.1| - 5.7 5.6 22.3 4.4 6.0 3.2 2.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF2892 PF11127.8 gi|240102706|ref|YP_002959015.1| - 6.6 6.8 23.0 4.6 7.3 4.3 3.8 3 1 0 3 3 3 0 Protein of unknown function (DUF2892) DUF2975 PF11188.8 gi|240102706|ref|YP_002959015.1| - 8.3 6.3 17.7 0.71 9.8 3.5 2.9 2 2 1 3 3 3 0 Protein of unknown function (DUF2975) DUF2079 PF09852.9 gi|240102707|ref|YP_002959016.1| - 1.4e-38 132.9 25.2 2.2e-38 132.3 25.2 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2079) Phage_integr_3 PF16795.5 gi|240102708|ref|YP_002959017.1| - 2.3e-54 183.6 0.8 5.4e-54 182.4 0.2 1.8 2 0 0 2 2 2 1 Archaeal phage integrase CarbopepD_reg_2 PF13715.6 gi|240102710|ref|YP_002959019.1| - 3.5e-07 30.1 4.9 1.1e-06 28.6 0.2 3.3 3 0 0 3 3 3 1 CarboxypepD_reg-like domain CarboxypepD_reg PF13620.6 gi|240102710|ref|YP_002959019.1| - 0.00056 20.1 1.0 0.00056 20.1 1.0 5.4 6 0 0 6 6 6 1 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|240102710|ref|YP_002959019.1| - 0.0012 18.7 1.7 0.01 15.7 0.0 3.3 3 0 0 3 3 3 1 PEGA domain Invasin_D3 PF09134.10 gi|240102710|ref|YP_002959019.1| - 0.0014 18.9 8.2 0.33 11.3 0.0 4.0 2 1 1 3 3 3 2 Invasin, domain 3 Vg_Tdu PF07545.14 gi|240102710|ref|YP_002959019.1| - 0.13 12.1 2.2 0.55 10.1 0.8 2.4 2 0 0 2 2 2 0 Vestigial/Tondu family MG2 PF01835.19 gi|240102710|ref|YP_002959019.1| - 0.15 12.5 0.9 3 8.3 0.0 3.2 3 0 0 3 3 3 0 MG2 domain Big_6 PF17936.1 gi|240102710|ref|YP_002959019.1| - 0.35 11.2 5.5 3.1 8.1 0.1 4.6 4 1 0 4 4 4 0 Bacterial Ig domain DUF1269 PF06897.12 gi|240102711|ref|YP_002959020.1| - 0.00042 20.6 1.6 0.00042 20.6 1.6 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1269) Gly-zipper_Omp PF13488.6 gi|240102711|ref|YP_002959020.1| - 0.002 18.1 25.0 0.002 18.1 25.0 2.8 2 1 1 3 3 3 1 Glycine zipper Gly-zipper_YMGG PF13441.6 gi|240102711|ref|YP_002959020.1| - 0.0027 17.4 24.7 0.0027 17.4 24.7 2.4 2 0 0 2 2 2 1 YMGG-like Gly-zipper TrbC PF04956.13 gi|240102711|ref|YP_002959020.1| - 0.01 16.0 8.9 0.93 9.8 2.3 2.6 2 0 0 2 2 2 0 TrbC/VIRB2 family Gly-zipper_OmpA PF13436.6 gi|240102711|ref|YP_002959020.1| - 0.5 10.2 35.3 0.059 13.2 26.9 2.6 2 1 0 2 2 2 0 Glycine-zipper domain Bacteriocin_IIc PF10439.9 gi|240102711|ref|YP_002959020.1| - 3 8.0 28.1 0.14 12.3 19.2 2.6 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide TraT PF05818.12 gi|240102711|ref|YP_002959020.1| - 9.6 5.8 14.4 5.2 6.7 8.0 2.7 2 1 0 2 2 2 0 Enterobacterial TraT complement resistance protein Vma12 PF11712.8 gi|240102712|ref|YP_002959021.1| - 0.014 15.5 5.3 0.014 15.5 5.3 1.8 1 1 1 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF2070 PF09843.9 gi|240102712|ref|YP_002959021.1| - 0.26 9.5 10.0 0.32 9.2 10.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Acyl_transf_3 PF01757.22 gi|240102712|ref|YP_002959021.1| - 0.74 8.8 13.5 1.8 7.5 5.4 1.9 1 1 1 2 2 2 0 Acyltransferase family DUF3040 PF11239.8 gi|240102712|ref|YP_002959021.1| - 0.99 9.7 5.2 0.86 9.9 2.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) SLATT_4 PF18186.1 gi|240102712|ref|YP_002959021.1| - 2.7 7.6 3.7 1.4 8.6 1.4 1.8 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 4 DUF805 PF05656.14 gi|240102714|ref|YP_002959023.1| - 0.01 16.2 1.9 0.012 16.0 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) DUF973 PF06157.11 gi|240102714|ref|YP_002959023.1| - 0.016 14.2 2.5 0.019 14.1 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF973) PhoR PF11808.8 gi|240102714|ref|YP_002959023.1| - 5.2 7.5 7.2 2.1 8.8 4.1 2.1 2 1 0 2 2 2 0 Phosphate regulon sensor protein PhoR HlyD_3 PF13437.6 gi|240102716|ref|YP_002959025.1| - 0.0043 17.7 0.3 0.93 10.2 0.0 2.8 3 1 0 3 3 3 1 HlyD family secretion protein fn3 PF00041.21 gi|240102716|ref|YP_002959025.1| - 0.029 14.7 2.3 0.06 13.7 0.4 2.4 1 1 2 3 3 3 0 Fibronectin type III domain MG2 PF01835.19 gi|240102716|ref|YP_002959025.1| - 0.053 14.0 0.2 0.33 11.4 0.1 2.3 2 1 1 3 3 3 0 MG2 domain DUF4625 PF15418.6 gi|240102716|ref|YP_002959025.1| - 0.11 12.8 1.3 4.2 7.6 1.1 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4625) DUF2341 PF10102.9 gi|240102716|ref|YP_002959025.1| - 0.63 10.7 5.7 2.3 8.9 1.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF2341) GPI-anchored PF10342.9 gi|240102716|ref|YP_002959025.1| - 2.9 8.7 13.4 0.24 12.2 0.3 3.7 1 1 3 4 4 4 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family Filament PF00038.21 gi|240102718|ref|YP_002959027.1| - 8.6e-06 25.6 33.9 0.0001 22.0 16.7 2.6 1 1 2 3 3 3 2 Intermediate filament protein RasGAP_C PF03836.15 gi|240102718|ref|YP_002959027.1| - 0.00048 20.3 6.3 0.00048 20.3 6.3 3.3 1 1 1 3 3 3 1 RasGAP C-terminus Spc7 PF08317.11 gi|240102718|ref|YP_002959027.1| - 0.0032 16.4 39.9 0.078 11.8 20.8 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein TSC22 PF01166.18 gi|240102718|ref|YP_002959027.1| - 0.0065 16.8 3.4 0.0065 16.8 3.4 5.0 2 2 2 5 5 5 2 TSC-22/dip/bun family GAS PF13851.6 gi|240102718|ref|YP_002959027.1| - 0.0073 15.7 41.4 0.11 11.8 21.7 2.3 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding Cep57_MT_bd PF06657.13 gi|240102718|ref|YP_002959027.1| - 0.0091 16.4 1.2 0.0091 16.4 1.2 3.7 2 2 1 3 3 3 1 Centrosome microtubule-binding domain of Cep57 KASH_CCD PF14662.6 gi|240102718|ref|YP_002959027.1| - 0.012 15.4 48.3 0.55 10.0 16.3 3.2 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 or KASH Fez1 PF06818.15 gi|240102718|ref|YP_002959027.1| - 0.017 15.6 33.7 0.39 11.1 10.4 2.6 1 1 1 2 2 2 0 Fez1 HMMR_N PF15905.5 gi|240102718|ref|YP_002959027.1| - 0.033 13.7 40.9 0.018 14.5 35.7 2.0 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal HAP1_N PF04849.13 gi|240102718|ref|YP_002959027.1| - 0.041 13.1 44.7 0.21 10.8 26.2 2.3 1 1 1 2 2 2 0 HAP1 N-terminal conserved region TACC_C PF05010.14 gi|240102718|ref|YP_002959027.1| - 0.044 13.6 32.4 0.057 13.2 6.7 3.1 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Chordopox_A13L PF05961.11 gi|240102718|ref|YP_002959027.1| - 0.077 13.2 0.3 0.34 11.2 0.0 2.2 2 0 0 2 2 1 0 Chordopoxvirus A13L protein AAA_13 PF13166.6 gi|240102718|ref|YP_002959027.1| - 0.086 11.5 30.8 0.68 8.5 31.2 1.9 1 1 0 1 1 1 0 AAA domain TMF_TATA_bd PF12325.8 gi|240102718|ref|YP_002959027.1| - 0.15 12.3 38.3 0.17 12.1 11.8 3.4 1 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF641 PF04859.12 gi|240102718|ref|YP_002959027.1| - 0.15 12.4 28.3 0.24 11.7 5.9 3.6 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) SHE3 PF17078.5 gi|240102718|ref|YP_002959027.1| - 0.16 11.7 35.4 0.039 13.7 12.2 2.8 2 1 0 2 2 2 0 SWI5-dependent HO expression protein 3 HALZ PF02183.18 gi|240102718|ref|YP_002959027.1| - 0.44 10.8 44.3 0.079 13.2 2.9 6.3 3 2 4 7 7 7 0 Homeobox associated leucine zipper Spectrin PF00435.21 gi|240102718|ref|YP_002959027.1| - 0.55 10.7 28.0 0.74 10.3 12.2 2.5 1 1 0 2 2 2 0 Spectrin repeat ZapB PF06005.12 gi|240102718|ref|YP_002959027.1| - 0.57 10.7 57.1 0.62 10.6 13.2 4.5 1 1 3 4 4 3 0 Cell division protein ZapB PEARLI-4 PF05278.12 gi|240102718|ref|YP_002959027.1| - 0.59 9.7 19.0 0.47 10.0 4.9 2.5 1 1 2 3 3 3 0 Arabidopsis phospholipase-like protein (PEARLI 4) FAM76 PF16046.5 gi|240102718|ref|YP_002959027.1| - 0.64 9.3 26.7 0.29 10.4 7.6 2.3 1 1 1 2 2 2 0 FAM76 protein YabA PF06156.13 gi|240102718|ref|YP_002959027.1| - 0.65 10.7 40.4 1.1 9.9 7.4 4.2 1 1 3 4 4 4 0 Initiation control protein YabA DUF3584 PF12128.8 gi|240102718|ref|YP_002959027.1| - 0.75 7.2 30.3 1 6.8 30.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ATG16 PF08614.11 gi|240102718|ref|YP_002959027.1| - 0.85 9.8 45.5 1.5 9.0 26.5 3.0 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) LRRFIP PF09738.9 gi|240102718|ref|YP_002959027.1| - 1 8.8 35.1 0.61 9.5 27.6 2.0 1 1 1 2 2 2 0 LRRFIP family DUF4140 PF13600.6 gi|240102718|ref|YP_002959027.1| - 1 9.9 22.2 1.3 9.5 5.7 3.5 2 2 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) FlxA PF14282.6 gi|240102718|ref|YP_002959027.1| - 1.3 9.1 42.3 0.05 13.6 13.1 3.2 1 1 1 3 3 3 0 FlxA-like protein bZIP_1 PF00170.21 gi|240102718|ref|YP_002959027.1| - 1.4 9.0 43.6 0.094 12.8 4.3 5.8 1 1 4 5 5 4 0 bZIP transcription factor Tropomyosin_1 PF12718.7 gi|240102718|ref|YP_002959027.1| - 1.7 8.8 40.0 0.59 10.3 25.7 2.4 1 1 1 2 2 2 0 Tropomyosin like DUF773 PF05600.12 gi|240102718|ref|YP_002959027.1| - 2 7.0 26.4 0.71 8.5 11.2 2.2 1 1 1 2 2 2 0 CDK5 regulatory subunit-associated protein 3 Atg14 PF10186.9 gi|240102718|ref|YP_002959027.1| - 2.6 7.0 33.8 0.67 9.0 14.7 2.8 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 DivIC PF04977.15 gi|240102718|ref|YP_002959027.1| - 2.7 7.8 50.5 0.16 11.8 4.5 5.5 1 1 4 5 5 5 0 Septum formation initiator DUF4201 PF13870.6 gi|240102718|ref|YP_002959027.1| - 2.8 7.7 34.3 32 4.2 10.6 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) ADIP PF11559.8 gi|240102718|ref|YP_002959027.1| - 3.7 7.6 45.6 4.7 7.3 16.9 3.1 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding DUF4407 PF14362.6 gi|240102718|ref|YP_002959027.1| - 4.1 6.7 27.5 4.9e+02 -0.1 27.5 2.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) FUSC PF04632.12 gi|240102718|ref|YP_002959027.1| - 4.1 5.8 16.6 0.62 8.5 5.9 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family DUF1664 PF07889.12 gi|240102718|ref|YP_002959027.1| - 4.2 7.4 29.1 0.76 9.8 5.2 4.3 2 1 2 4 4 4 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|240102718|ref|YP_002959027.1| - 4.6 7.6 41.7 3 8.2 5.1 3.6 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Mst1_SARAH PF11629.8 gi|240102718|ref|YP_002959027.1| - 4.7 7.4 6.9 1.1 9.4 1.6 2.8 2 1 0 2 2 2 0 C terminal SARAH domain of Mst1 UPF0242 PF06785.11 gi|240102718|ref|YP_002959027.1| - 4.9 7.2 41.3 6.3 6.9 23.4 2.7 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus HIP1_clath_bdg PF16515.5 gi|240102718|ref|YP_002959027.1| - 5.3 7.7 41.5 0.44 11.2 8.1 3.7 1 1 2 3 3 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Cnn_1N PF07989.11 gi|240102718|ref|YP_002959027.1| - 5.6 7.2 40.6 0.042 14.0 11.9 4.6 2 2 2 4 4 4 0 Centrosomin N-terminal motif 1 LPP PF04728.13 gi|240102718|ref|YP_002959027.1| - 5.8 7.4 18.5 6.6 7.2 0.8 4.9 4 1 1 5 5 5 0 Lipoprotein leucine-zipper Seryl_tRNA_N PF02403.22 gi|240102718|ref|YP_002959027.1| - 6.5 7.0 37.6 6.9 6.9 15.6 3.6 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF3450 PF11932.8 gi|240102718|ref|YP_002959027.1| - 8.9 5.5 36.5 8.7 5.6 11.6 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) AAA_16 PF13191.6 gi|240102719|ref|YP_002959028.1| - 1.2e-09 38.8 0.0 3.1e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain DUF87 PF01935.17 gi|240102719|ref|YP_002959028.1| - 4.6e-07 30.2 0.2 0.00031 20.9 0.0 2.3 2 0 0 2 2 2 2 Helicase HerA, central domain AAA_10 PF12846.7 gi|240102719|ref|YP_002959028.1| - 8.2e-07 28.3 0.1 0.0016 17.4 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|240102719|ref|YP_002959028.1| - 2.8e-06 27.7 0.0 0.0082 16.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 gi|240102719|ref|YP_002959028.1| - 0.00018 21.9 0.0 0.009 16.4 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|240102719|ref|YP_002959028.1| - 0.00019 21.5 0.2 0.37 10.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.9 gi|240102719|ref|YP_002959028.1| - 0.00038 19.5 0.0 0.0095 14.9 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.27 gi|240102719|ref|YP_002959028.1| - 0.0015 19.1 0.0 0.0028 18.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter RuvB_N PF05496.12 gi|240102719|ref|YP_002959028.1| - 0.0017 18.1 0.0 0.018 14.8 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain ATPase_2 PF01637.18 gi|240102719|ref|YP_002959028.1| - 0.0021 18.0 0.1 0.039 13.9 0.1 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|240102719|ref|YP_002959028.1| - 0.007 16.6 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|240102719|ref|YP_002959028.1| - 0.0076 16.8 1.5 0.012 16.2 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|240102719|ref|YP_002959028.1| - 0.0094 15.7 0.0 0.036 13.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|240102719|ref|YP_002959028.1| - 0.011 16.3 0.0 0.03 14.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|240102719|ref|YP_002959028.1| - 0.012 15.6 0.2 0.038 14.0 0.1 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|240102719|ref|YP_002959028.1| - 0.016 14.9 0.0 0.043 13.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain PRK PF00485.18 gi|240102719|ref|YP_002959028.1| - 0.017 14.8 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 gi|240102719|ref|YP_002959028.1| - 0.02 15.3 0.0 0.068 13.6 0.0 2.0 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.18 gi|240102719|ref|YP_002959028.1| - 0.027 13.8 0.0 0.076 12.3 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF815 PF05673.13 gi|240102719|ref|YP_002959028.1| - 0.028 13.6 0.0 0.048 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.12 gi|240102719|ref|YP_002959028.1| - 0.039 13.9 0.0 0.18 11.7 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_7 PF12775.7 gi|240102719|ref|YP_002959028.1| - 0.04 13.4 0.0 0.072 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region PhoH PF02562.16 gi|240102719|ref|YP_002959028.1| - 0.042 13.3 0.0 0.51 9.8 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_33 PF13671.6 gi|240102719|ref|YP_002959028.1| - 0.047 13.9 0.0 0.15 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|240102719|ref|YP_002959028.1| - 0.05 12.8 0.0 0.093 11.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Cytidylate_kin PF02224.18 gi|240102719|ref|YP_002959028.1| - 0.073 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Cytidylate kinase RsgA_GTPase PF03193.16 gi|240102719|ref|YP_002959028.1| - 0.083 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|240102719|ref|YP_002959028.1| - 0.084 11.9 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PduV-EutP PF10662.9 gi|240102719|ref|YP_002959028.1| - 0.13 12.0 0.1 0.73 9.6 0.0 2.2 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation SMC_N PF02463.19 gi|240102719|ref|YP_002959028.1| - 0.14 11.6 0.0 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|240102719|ref|YP_002959028.1| - 0.15 11.8 1.6 0.21 11.3 0.0 2.0 2 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_19 PF13245.6 gi|240102719|ref|YP_002959028.1| - 0.16 12.3 0.0 0.75 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|240102719|ref|YP_002959028.1| - 0.17 11.9 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IFT57 PF10498.9 gi|240102722|ref|YP_002959031.1| - 0.00044 19.3 1.9 0.00044 19.3 1.9 2.9 3 0 0 3 3 3 2 Intra-flagellar transport protein 57 Tetraspanin PF00335.20 gi|240102722|ref|YP_002959031.1| - 0.0038 17.0 3.9 0.0054 16.5 3.9 1.3 1 1 0 1 1 1 1 Tetraspanin family GHMP_kinases_C PF08544.13 gi|240102722|ref|YP_002959031.1| - 0.024 15.0 3.3 1.2 9.6 0.7 2.6 3 0 0 3 3 3 0 GHMP kinases C terminal DUF3995 PF13160.6 gi|240102722|ref|YP_002959031.1| - 0.08 13.3 1.5 0.12 12.7 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3995) Ribosomal_S15 PF00312.22 gi|240102722|ref|YP_002959031.1| - 0.083 13.1 0.4 0.083 13.1 0.4 3.3 3 0 0 3 3 3 0 Ribosomal protein S15 Ldt_C PF17969.1 gi|240102722|ref|YP_002959031.1| - 0.99 10.2 4.2 6.1 7.7 0.0 2.9 3 0 0 3 3 3 0 L,D-transpeptidase C-terminal domain Streptin-Immun PF11083.8 gi|240102722|ref|YP_002959031.1| - 8.1 6.9 17.1 0.19 12.2 1.7 3.4 3 0 0 3 3 3 0 Lantibiotic streptin immunity protein EMP24_GP25L PF01105.24 gi|240102723|ref|YP_002959032.1| - 4.7e-05 23.4 0.0 4.7e-05 23.4 0.0 1.5 2 0 0 2 2 2 1 emp24/gp25L/p24 family/GOLD Mntp PF02659.15 gi|240102723|ref|YP_002959032.1| - 0.022 14.5 0.7 4.6 7.0 0.3 2.2 2 0 0 2 2 2 0 Putative manganese efflux pump PPC PF04151.15 gi|240102723|ref|YP_002959032.1| - 0.031 15.4 0.1 0.33 12.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain YiaAB PF05360.14 gi|240102723|ref|YP_002959032.1| - 0.039 14.2 0.8 0.039 14.2 0.8 2.2 2 0 0 2 2 2 0 yiaA/B two helix domain MazE_antitoxin PF04014.18 gi|240102724|ref|YP_002959033.1| - 0.00015 21.6 0.6 0.005 16.7 0.2 2.3 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Sigma70_r1_2 PF00140.20 gi|240102724|ref|YP_002959033.1| - 0.0098 15.9 0.3 0.023 14.7 0.3 1.6 1 0 0 1 1 1 1 Sigma-70 factor, region 1.2 Swi3 PF07962.12 gi|240102725|ref|YP_002959034.1| - 0.12 12.3 1.2 0.27 11.2 0.0 2.2 3 0 0 3 3 3 0 Replication Fork Protection Component Swi3 DUF99 PF01949.16 gi|240102725|ref|YP_002959034.1| - 0.19 11.1 0.2 5.3 6.4 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function DUF99 ATG16 PF08614.11 gi|240102725|ref|YP_002959034.1| - 0.72 10.0 10.5 0.094 12.9 5.7 1.8 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Rx_N PF18052.1 gi|240102730|ref|YP_002959039.1| - 0.044 14.0 2.2 0.053 13.8 0.6 1.9 1 1 1 2 2 2 0 Rx N-terminal domain PspA_IM30 PF04012.12 gi|240102730|ref|YP_002959039.1| - 0.052 13.1 0.8 0.066 12.8 0.8 1.1 1 0 0 1 1 1 0 PspA/IM30 family COMP PF11598.8 gi|240102730|ref|YP_002959039.1| - 0.07 13.6 0.4 0.07 13.6 0.4 1.9 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein PDDEXK_1 PF12705.7 gi|240102734|ref|YP_002959043.1| - 4.5e-07 30.0 0.0 2.1e-05 24.6 0.0 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|240102734|ref|YP_002959043.1| - 5.6e-06 26.6 0.0 0.0005 20.2 0.0 2.2 2 1 0 2 2 2 2 Domain of unknown function DUF83 DUF945 PF06097.11 gi|240102735|ref|YP_002959044.1| - 0.29 10.2 0.0 0.32 10.0 0.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) Met_10 PF02475.16 gi|240102736|ref|YP_002959045.1| - 1.7e-69 233.6 0.7 2.2e-69 233.2 0.7 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|240102736|ref|YP_002959045.1| - 0.00024 20.8 0.0 0.0004 20.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|240102736|ref|YP_002959045.1| - 0.0014 18.1 0.0 0.0021 17.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|240102736|ref|YP_002959045.1| - 0.0034 17.0 0.0 0.0055 16.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|240102736|ref|YP_002959045.1| - 0.0078 16.9 0.0 0.016 15.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.17 gi|240102736|ref|YP_002959045.1| - 0.0089 15.4 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltrans_SAM PF10672.9 gi|240102736|ref|YP_002959045.1| - 0.065 12.4 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase RNA_Me_trans PF04252.13 gi|240102737|ref|YP_002959046.1| - 0.00022 20.9 0.0 0.00045 19.9 0.0 1.5 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase LpxI_N PF17930.1 gi|240102737|ref|YP_002959046.1| - 0.007 16.3 0.1 0.022 14.6 0.0 1.8 2 0 0 2 2 2 1 LpxI N-terminal domain FeoC PF09012.10 gi|240102737|ref|YP_002959046.1| - 0.058 13.5 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator tRNA_m1G_MT PF01746.21 gi|240102737|ref|YP_002959046.1| - 0.095 12.4 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 tRNA (Guanine-1)-methyltransferase tRNA-synt_1 PF00133.22 gi|240102739|ref|YP_002959048.1| - 2.7e-142 475.1 0.8 3.9e-141 471.3 0.8 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|240102739|ref|YP_002959048.1| - 1.8e-38 131.9 0.5 1.8e-38 131.9 0.5 1.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|240102739|ref|YP_002959048.1| - 2.2e-25 89.2 4.9 2.2e-15 56.3 0.0 3.6 4 0 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|240102739|ref|YP_002959048.1| - 3.1e-06 26.8 0.0 0.04 13.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|240102739|ref|YP_002959048.1| - 3e-05 23.6 0.1 0.0001 21.9 0.1 1.8 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DUF2250 PF10007.9 gi|240102739|ref|YP_002959048.1| - 0.05 13.7 0.5 14 5.9 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) NID PF07292.13 gi|240102739|ref|YP_002959048.1| - 0.11 13.2 0.3 2.2 9.0 0.0 2.4 2 0 0 2 2 2 0 Nmi/IFP 35 domain (NID) Spc110_C PF18520.1 gi|240102742|ref|YP_002959051.1| - 0.001 18.6 0.2 1 9.0 0.0 2.3 2 0 0 2 2 2 2 Spindle pole body component 110 C-terminal domain LisH_TPL PF17814.1 gi|240102742|ref|YP_002959051.1| - 0.042 13.5 0.0 0.17 11.6 0.0 1.9 2 0 0 2 2 2 0 LisH-like dimerisation domain DUF5410 PF17422.2 gi|240102744|ref|YP_002959053.1| - 0.003 16.9 0.8 0.0042 16.4 0.8 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5410) DUF4395 PF14340.6 gi|240102744|ref|YP_002959053.1| - 0.29 11.5 2.1 0.79 10.1 2.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) Glyco_hydro_30 PF02055.16 gi|240102745|ref|YP_002959054.1| - 0.16 10.9 0.0 0.18 10.7 0.0 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 30 TIM-barrel domain Methyltransf_25 PF13649.6 gi|240102746|ref|YP_002959055.1| - 7.8e-11 42.5 0.0 1.5e-10 41.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240102746|ref|YP_002959055.1| - 1.5e-09 38.4 0.0 2.9e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240102746|ref|YP_002959055.1| - 1.4e-07 31.5 0.0 1.5e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|240102746|ref|YP_002959055.1| - 5.6e-07 29.5 0.0 7.3e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|240102746|ref|YP_002959055.1| - 2.8e-06 26.9 0.0 2.9e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|240102746|ref|YP_002959055.1| - 0.00013 22.0 0.0 0.00015 21.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|240102746|ref|YP_002959055.1| - 0.00063 19.3 0.0 0.00073 19.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|240102746|ref|YP_002959055.1| - 0.00077 20.2 0.0 0.0016 19.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|240102746|ref|YP_002959055.1| - 0.0025 17.2 0.0 0.0025 17.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.11 gi|240102746|ref|YP_002959055.1| - 0.0054 16.4 0.0 0.0058 16.3 0.0 1.1 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.10 gi|240102746|ref|YP_002959055.1| - 0.0062 16.1 0.0 0.0087 15.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N2227 PF07942.12 gi|240102746|ref|YP_002959055.1| - 0.0098 15.1 0.0 0.011 14.9 0.0 1.0 1 0 0 1 1 1 1 N2227-like protein MethyltransfD12 PF02086.15 gi|240102746|ref|YP_002959055.1| - 0.018 14.7 0.0 0.02 14.6 0.0 1.1 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase AdoMet_MTase PF07757.13 gi|240102746|ref|YP_002959055.1| - 0.043 14.1 0.0 0.062 13.6 0.0 1.3 1 1 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase PEGA PF08308.11 gi|240102747|ref|YP_002959056.1| - 1.6e-76 252.2 22.5 2.4e-20 72.2 1.8 4.5 2 1 2 4 4 4 4 PEGA domain Glucodextran_C PF09985.9 gi|240102747|ref|YP_002959056.1| - 8.5e-66 221.7 1.6 1.5e-65 220.8 1.6 1.4 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase CarboxypepD_reg PF13620.6 gi|240102747|ref|YP_002959056.1| - 2.3e-10 40.6 20.4 0.005 17.1 0.1 6.9 6 1 0 6 6 5 4 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|240102747|ref|YP_002959056.1| - 4.1e-10 39.5 12.3 0.014 15.4 1.3 5.2 1 1 3 4 4 4 4 CarboxypepD_reg-like domain DUF2846 PF11008.8 gi|240102747|ref|YP_002959056.1| - 5.7e-10 39.1 1.8 0.012 15.7 0.1 4.4 1 1 3 4 4 4 2 Protein of unknown function (DUF2846) DUF1533 PF07550.11 gi|240102747|ref|YP_002959056.1| - 0.0027 17.5 5.2 0.45 10.4 0.6 4.8 4 2 0 4 4 4 1 Protein of unknown function (DUF1533) Laminin_G_3 PF13385.6 gi|240102747|ref|YP_002959056.1| - 0.013 15.7 7.0 5.3 7.2 0.0 5.4 3 3 2 6 6 6 0 Concanavalin A-like lectin/glucanases superfamily AfaD PF05775.12 gi|240102747|ref|YP_002959056.1| - 0.049 14.1 0.0 33 5.0 0.0 3.4 3 0 0 3 3 3 0 Enterobacteria AfaD invasin protein DUF2057 PF09829.9 gi|240102747|ref|YP_002959056.1| - 0.051 13.7 3.4 19 5.4 0.0 4.1 5 1 1 6 6 5 0 Uncharacterized protein conserved in bacteria (DUF2057) FLgD_tudor PF13861.6 gi|240102747|ref|YP_002959056.1| - 0.071 13.4 0.0 1.8 8.9 0.0 3.2 3 1 0 3 3 3 0 FlgD Tudor-like domain ASH PF15780.5 gi|240102747|ref|YP_002959056.1| - 0.55 10.5 6.5 5.2 7.3 1.0 4.5 5 0 0 5 5 5 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF3439 PF11921.8 gi|240102747|ref|YP_002959056.1| - 0.55 10.2 7.4 1.8 8.5 7.4 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) DUF1654 PF07867.11 gi|240102747|ref|YP_002959056.1| - 0.57 9.9 1.7 11 5.8 0.2 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1654) DUF2606 PF10794.9 gi|240102747|ref|YP_002959056.1| - 2.4 7.9 4.8 1.2e+02 2.5 0.0 4.2 4 0 0 4 4 4 0 Protein of unknown function (DUF2606) DUF3244 PF11589.8 gi|240102747|ref|YP_002959056.1| - 2.7 8.1 7.4 28 4.9 0.3 3.9 3 2 1 4 4 4 0 Domain of unknown function (DUF3244) MMR_HSR1_C PF08438.10 gi|240102748|ref|YP_002959057.1| - 1.4e-36 125.4 0.0 2.4e-36 124.7 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|240102748|ref|YP_002959057.1| - 4.5e-20 71.8 0.0 2.4e-19 69.5 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|240102748|ref|YP_002959057.1| - 1.3e-13 50.7 0.0 2.8e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|240102748|ref|YP_002959057.1| - 1e-10 41.3 0.1 6.4e-07 29.0 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B EcoEI_R_C PF08463.10 gi|240102748|ref|YP_002959057.1| - 0.0019 18.3 0.1 0.0032 17.6 0.1 1.3 1 0 0 1 1 1 1 EcoEI R protein C-terminal MMR_HSR1_Xtn PF16897.5 gi|240102748|ref|YP_002959057.1| - 0.074 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Sigma70_r1_1 PF03979.14 gi|240102748|ref|YP_002959057.1| - 0.082 13.0 0.0 0.27 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 eRF1_2 PF03464.15 gi|240102749|ref|YP_002959058.1| - 8.3e-50 168.5 0.0 1.5e-49 167.7 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|240102749|ref|YP_002959058.1| - 1.7e-35 121.9 0.4 5.7e-35 120.2 0.4 1.9 1 0 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|240102749|ref|YP_002959058.1| - 2.7e-16 60.1 0.2 5.7e-16 59.0 0.2 1.6 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 gi|240102749|ref|YP_002959058.1| - 3.1e-14 53.4 0.0 8.1e-14 52.0 0.0 1.7 1 1 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_1 PF03463.15 gi|240102749|ref|YP_002959058.1| - 5.5e-09 36.1 0.0 9.2e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 HypA PF01155.19 gi|240102749|ref|YP_002959058.1| - 0.00042 20.3 0.1 0.00089 19.3 0.1 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA baeRF_family12 PF18856.1 gi|240102749|ref|YP_002959058.1| - 0.0031 18.1 0.0 0.0076 16.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 zf-ribbon_3 PF13248.6 gi|240102749|ref|YP_002959058.1| - 0.0072 15.7 2.7 0.35 10.3 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|240102749|ref|YP_002959058.1| - 0.023 14.8 3.0 0.026 14.6 1.4 2.0 2 0 0 2 2 2 0 Zinc ribbon domain zf-RRPl_C4 PF17026.5 gi|240102749|ref|YP_002959058.1| - 0.028 14.5 0.2 0.056 13.6 0.2 1.4 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type Lar_restr_allev PF14354.6 gi|240102749|ref|YP_002959058.1| - 0.052 13.9 1.5 0.47 10.9 0.1 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF4015 PF13200.6 gi|240102749|ref|YP_002959058.1| - 0.074 12.1 0.0 0.29 10.2 0.0 2.0 3 0 0 3 3 3 0 Putative glycosyl hydrolase domain zinc_ribbon_6 PF14599.6 gi|240102749|ref|YP_002959058.1| - 0.085 12.9 0.3 0.18 11.8 0.3 1.5 1 0 0 1 1 1 0 Zinc-ribbon AvrM-A PF18241.1 gi|240102749|ref|YP_002959058.1| - 3.7 8.0 5.5 1.4 9.3 0.2 2.8 3 0 0 3 3 3 0 Flax-rust effector AvrM-A ParE_toxin PF05016.15 gi|240102750|ref|YP_002959059.1| - 0.0018 18.9 0.9 0.0018 18.9 0.9 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Takusan PF04822.13 gi|240102752|ref|YP_002959061.1| - 0.37 10.7 2.5 0.83 9.6 0.2 2.1 2 0 0 2 2 2 0 Takusan IFP_35_N PF07334.13 gi|240102752|ref|YP_002959061.1| - 0.41 10.8 3.6 0.53 10.4 0.4 2.0 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus zf-TFIIB PF13453.6 gi|240102752|ref|YP_002959061.1| - 0.65 9.4 3.3 0.7 9.3 0.2 2.4 3 0 0 3 3 3 0 Transcription factor zinc-finger ATPase_2 PF01637.18 gi|240102753|ref|YP_002959062.1| - 7.6e-21 75.1 0.0 1.6e-20 74.1 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|240102753|ref|YP_002959062.1| - 3.9e-07 30.2 0.0 0.038 14.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|240102753|ref|YP_002959062.1| - 0.0075 16.7 0.1 0.025 15.0 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|240102753|ref|YP_002959062.1| - 0.013 15.8 0.0 0.04 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain SurA_N_2 PF13623.6 gi|240102753|ref|YP_002959062.1| - 0.041 13.8 0.0 0.079 12.8 0.0 1.4 1 0 0 1 1 1 0 SurA N-terminal domain TrmB PF01978.19 gi|240102753|ref|YP_002959062.1| - 0.12 12.3 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB tRNA-synt_1d PF00750.19 gi|240102754|ref|YP_002959063.1| - 1.6e-38 132.6 0.8 8.6e-26 90.7 0.6 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|240102754|ref|YP_002959063.1| - 6.7e-38 129.5 0.2 6.7e-38 129.5 0.2 3.0 4 0 0 4 4 4 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|240102754|ref|YP_002959063.1| - 7.6e-16 58.5 0.2 3.5e-15 56.3 0.0 2.3 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1e PF01406.19 gi|240102754|ref|YP_002959063.1| - 8.7e-05 22.0 0.0 0.00015 21.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|240102754|ref|YP_002959063.1| - 0.0027 16.0 0.5 0.0056 15.0 0.1 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) SH3BP5 PF05276.14 gi|240102754|ref|YP_002959063.1| - 0.1 12.4 0.3 13 5.5 0.1 2.3 2 0 0 2 2 2 0 SH3 domain-binding protein 5 (SH3BP5) Death PF00531.22 gi|240102754|ref|YP_002959063.1| - 0.14 12.3 0.6 12 6.1 0.0 3.3 3 0 0 3 3 3 0 Death domain AAR2 PF05282.11 gi|240102754|ref|YP_002959063.1| - 0.16 11.4 0.0 0.33 10.3 0.0 1.6 1 0 0 1 1 1 0 AAR2 protein DnaG_DnaB_bind PF08278.11 gi|240102754|ref|YP_002959063.1| - 0.3 11.7 3.6 6.8 7.3 0.2 3.3 3 0 0 3 3 3 0 DNA primase DnaG DnaB-binding Lip_prot_lig_C PF10437.9 gi|240102755|ref|YP_002959064.1| - 6.7e-07 29.2 0.2 1.3e-06 28.3 0.2 1.4 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus SpoIIM PF01944.17 gi|240102756|ref|YP_002959065.1| - 5.4e-29 101.2 21.8 6.8e-29 100.9 21.8 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M FHIPEP PF00771.20 gi|240102756|ref|YP_002959065.1| - 0.45 8.9 8.6 0.63 8.4 8.6 1.2 1 0 0 1 1 1 0 FHIPEP family Radical_SAM PF04055.21 gi|240102758|ref|YP_002959067.1| - 1.1e-27 97.5 0.0 2.1e-27 96.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|240102758|ref|YP_002959067.1| - 0.0007 19.7 0.0 0.0015 18.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain T2SSM PF04612.12 gi|240102758|ref|YP_002959067.1| - 0.017 15.2 0.0 1.7 8.7 0.0 2.5 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein M DUF5010 PF16402.5 gi|240102758|ref|YP_002959067.1| - 0.14 10.9 0.0 0.24 10.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5010) Glyco_hydro_53 PF07745.13 gi|240102758|ref|YP_002959067.1| - 0.24 10.3 0.0 0.35 9.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 53 ACT PF01842.25 gi|240102759|ref|YP_002959068.1| - 1.8e-07 30.8 0.1 2.9e-07 30.1 0.1 1.3 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|240102759|ref|YP_002959068.1| - 0.022 14.5 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 ACT domain ACT_4 PF13291.6 gi|240102759|ref|YP_002959068.1| - 0.032 14.8 0.2 0.15 12.7 0.2 2.1 1 1 0 1 1 1 0 ACT domain HU-CCDC81_euk_2 PF18289.1 gi|240102759|ref|YP_002959068.1| - 0.04 14.1 0.0 0.079 13.1 0.0 1.5 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 MNHE PF01899.16 gi|240102760|ref|YP_002959069.1| - 1.8e-46 157.5 1.3 2e-46 157.4 1.3 1.1 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit ABC2_membrane_3 PF12698.7 gi|240102760|ref|YP_002959069.1| - 0.035 13.2 2.5 0.037 13.1 2.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein TraP PF07296.11 gi|240102760|ref|YP_002959069.1| - 0.11 11.7 0.7 0.16 11.1 0.0 1.6 2 0 0 2 2 2 0 TraP protein MrpF_PhaF PF04066.13 gi|240102761|ref|YP_002959070.1| - 5.6e-18 65.1 10.8 5.6e-18 65.1 10.8 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) IncD PF17628.2 gi|240102761|ref|YP_002959070.1| - 0.056 13.2 3.9 0.073 12.8 3.9 1.4 1 1 0 1 1 1 0 Inclusion membrane protein D YlaH PF14036.6 gi|240102761|ref|YP_002959070.1| - 0.6 10.5 9.1 3.6 8.0 0.7 2.1 1 1 1 2 2 2 0 YlaH-like protein PhaG_MnhG_YufB PF03334.14 gi|240102762|ref|YP_002959071.1| - 1.8e-24 85.7 6.3 2.3e-24 85.4 6.3 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4040 PF13244.6 gi|240102763|ref|YP_002959072.1| - 9.7e-19 67.3 10.0 1.3e-18 66.9 10.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) TspO_MBR PF03073.15 gi|240102763|ref|YP_002959072.1| - 0.0034 17.4 5.1 0.0043 17.1 5.1 1.1 1 0 0 1 1 1 1 TspO/MBR family DUF1129 PF06570.11 gi|240102763|ref|YP_002959072.1| - 0.024 14.1 0.3 0.044 13.3 0.0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) DUF2721 PF11026.8 gi|240102763|ref|YP_002959072.1| - 0.38 10.6 9.2 0.13 12.1 6.7 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) Phage_holin_5_2 PF16079.5 gi|240102763|ref|YP_002959072.1| - 4.8 7.6 7.6 2.1e+02 2.3 7.5 2.1 1 1 0 1 1 1 0 Phage holin family Hol44, in holin superfamily V B12D PF06522.11 gi|240102763|ref|YP_002959072.1| - 8.6 6.2 6.2 27 4.7 0.6 2.4 1 1 1 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit MnhB PF04039.13 gi|240102764|ref|YP_002959073.1| - 1.5e-23 83.5 10.9 1.5e-23 83.5 10.9 2.0 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter Polysacc_synt_C PF14667.6 gi|240102764|ref|YP_002959073.1| - 1.4 9.0 13.8 1 9.4 9.7 2.3 1 1 1 2 2 2 0 Polysaccharide biosynthesis C-terminal domain DUF2157 PF09925.9 gi|240102764|ref|YP_002959073.1| - 6.7 6.5 11.7 0.37 10.6 1.1 2.7 1 1 2 3 3 3 0 Predicted membrane protein (DUF2157) Oxidored_q2 PF00420.24 gi|240102765|ref|YP_002959074.1| - 5e-31 106.4 6.5 6e-31 106.2 6.5 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|240102765|ref|YP_002959074.1| - 0.0098 15.8 2.4 0.0098 15.8 2.4 1.9 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) Proton_antipo_M PF00361.20 gi|240102766|ref|YP_002959075.1| - 9.1e-64 215.5 24.4 9.1e-64 215.5 24.4 2.3 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|240102766|ref|YP_002959075.1| - 8.2e-08 31.9 10.5 8.2e-08 31.9 10.5 2.3 1 1 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein Sigma_reg_N PF13800.6 gi|240102766|ref|YP_002959075.1| - 4.9 7.5 8.5 1.6 9.1 0.1 3.6 3 0 0 3 3 3 0 Sigma factor regulator N-terminal Proton_antipo_M PF00361.20 gi|240102767|ref|YP_002959076.1| - 8.6e-59 199.1 28.6 8.6e-59 199.1 28.6 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter DUF3285 PF11688.8 gi|240102767|ref|YP_002959076.1| - 0.18 11.8 0.1 0.18 11.8 0.1 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) SLATT_fungal PF18142.1 gi|240102767|ref|YP_002959076.1| - 0.26 11.3 3.6 0.23 11.4 0.4 2.4 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain NADHdh PF00146.21 gi|240102768|ref|YP_002959077.1| - 2.8e-61 207.5 22.3 3.2e-61 207.3 22.3 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Oxidored_q6 PF01058.22 gi|240102769|ref|YP_002959078.1| - 2.2e-19 69.6 0.0 3.3e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 gi|240102770|ref|YP_002959079.1| - 2.7e-31 108.7 0.2 3.4e-31 108.4 0.2 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.19 gi|240102771|ref|YP_002959080.1| - 9.1e-75 251.2 0.0 5.6e-73 245.4 0.0 2.3 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Fer4 PF00037.27 gi|240102772|ref|YP_002959081.1| - 3.1e-14 52.1 10.4 7.5e-08 31.9 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102772|ref|YP_002959081.1| - 3.3e-12 46.8 9.2 7.6e-12 45.6 9.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|240102772|ref|YP_002959081.1| - 2.1e-09 37.4 3.9 7.5e-05 22.8 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240102772|ref|YP_002959081.1| - 9.6e-08 32.1 7.8 2.5e-07 30.7 8.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102772|ref|YP_002959081.1| - 1.7e-07 31.2 18.4 1.6e-05 25.0 10.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240102772|ref|YP_002959081.1| - 2e-07 31.8 10.2 0.0014 19.5 0.0 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|240102772|ref|YP_002959081.1| - 2.2e-05 24.3 12.6 0.0083 16.2 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|240102772|ref|YP_002959081.1| - 8.7e-05 22.4 12.9 0.0021 18.0 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|240102772|ref|YP_002959081.1| - 0.0011 19.4 8.6 0.0011 19.4 8.6 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|240102772|ref|YP_002959081.1| - 0.0018 19.0 6.4 0.69 10.7 0.4 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|240102772|ref|YP_002959081.1| - 0.0022 18.5 9.8 0.4 11.2 1.8 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|240102772|ref|YP_002959081.1| - 0.015 16.2 17.8 0.023 15.6 4.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|240102772|ref|YP_002959081.1| - 0.018 15.5 13.2 0.35 11.5 3.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|240102772|ref|YP_002959081.1| - 0.02 15.1 0.9 0.02 15.1 0.9 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|240102772|ref|YP_002959081.1| - 0.036 14.9 5.8 0.5 11.2 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|240102772|ref|YP_002959081.1| - 0.08 13.5 9.0 1.3 9.6 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CarboxypepD_reg PF13620.6 gi|240102773|ref|YP_002959082.1| - 2.3e-09 37.4 14.7 1.7e-08 34.6 2.1 4.6 4 2 1 5 5 5 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|240102773|ref|YP_002959082.1| - 5.6e-08 32.7 0.1 5.6e-08 32.7 0.1 5.6 6 2 0 6 6 5 1 Bacterial Ig-like domain (group 1) DUF4198 PF10670.9 gi|240102773|ref|YP_002959082.1| - 1.2e-07 32.3 0.0 0.0025 18.2 0.0 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF4198) MG4 PF17789.1 gi|240102773|ref|YP_002959082.1| - 3.7e-07 30.2 2.2 0.049 13.8 0.0 3.4 3 0 0 3 3 3 2 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|240102773|ref|YP_002959082.1| - 3.2e-05 24.1 0.4 3.2e-05 24.1 0.4 4.6 4 1 1 5 5 4 1 Invasin, domain 3 CarbopepD_reg_2 PF13715.6 gi|240102773|ref|YP_002959082.1| - 0.00061 19.7 1.9 0.0072 16.3 0.4 2.6 2 0 0 2 2 2 1 CarboxypepD_reg-like domain YtkA PF13115.6 gi|240102773|ref|YP_002959082.1| - 0.00078 20.0 0.1 7.5 7.2 0.0 4.2 5 0 0 5 5 5 1 YtkA-like MGC-24 PF05283.11 gi|240102773|ref|YP_002959082.1| - 0.04 14.4 4.1 0.064 13.7 4.1 1.2 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Mucin PF01456.17 gi|240102773|ref|YP_002959082.1| - 0.074 13.0 14.1 0.13 12.3 14.1 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF824 PF05688.11 gi|240102773|ref|YP_002959082.1| - 0.5 10.2 3.6 0.81 9.6 0.0 3.1 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) Big_3_5 PF16640.5 gi|240102773|ref|YP_002959082.1| - 3.7 7.8 20.4 0.16 12.2 6.9 3.7 2 1 1 3 3 2 0 Bacterial Ig-like domain (group 3) Hjc PF01870.18 gi|240102774|ref|YP_002959083.1| - 3.2e-31 107.2 0.1 4.1e-31 106.8 0.1 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) HicA_toxin PF07927.12 gi|240102774|ref|YP_002959083.1| - 0.0029 17.6 0.1 0.033 14.2 0.1 2.1 2 0 0 2 2 2 1 HicA toxin of bacterial toxin-antitoxin, HTH_17 PF12728.7 gi|240102774|ref|YP_002959083.1| - 0.0064 16.7 2.2 0.97 9.7 0.0 3.2 2 1 1 3 3 3 1 Helix-turn-helix domain zf_Hakai PF18408.1 gi|240102774|ref|YP_002959083.1| - 0.039 13.7 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 C2H2 Hakai zinc finger domain Hexapep PF00132.24 gi|240102775|ref|YP_002959084.1| - 1.7e-14 52.9 14.6 1.9e-08 33.7 4.0 4.0 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|240102775|ref|YP_002959084.1| - 2.5e-06 27.1 9.0 0.00023 20.8 1.6 2.8 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|240102775|ref|YP_002959084.1| - 0.18 9.9 1.5 0.25 9.4 1.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) HupF_HypC PF01455.18 gi|240102775|ref|YP_002959084.1| - 2.2 8.5 5.4 22 5.3 0.8 3.9 3 1 1 4 4 4 0 HupF/HypC family Prenyltransf PF01255.19 gi|240102776|ref|YP_002959085.1| - 7e-83 277.6 0.0 8.1e-83 277.4 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase HSDR_N PF04313.14 gi|240102777|ref|YP_002959086.1| - 2.3e-09 37.5 1.6 3.9e-05 23.7 0.0 2.5 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|240102777|ref|YP_002959086.1| - 3.9e-08 33.2 0.0 7.9e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_9 PF08011.11 gi|240102777|ref|YP_002959086.1| - 0.0076 16.1 0.1 0.027 14.3 0.0 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily GATase_4 PF13230.6 gi|240102778|ref|YP_002959087.1| - 2.1e-08 33.4 0.0 1.2e-07 30.9 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|240102778|ref|YP_002959087.1| - 2.1e-07 31.2 0.0 3.5e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain CBS PF00571.28 gi|240102779|ref|YP_002959088.1| - 6.9e-28 96.9 5.6 1.2e-14 54.4 0.2 2.1 2 0 0 2 2 2 2 CBS domain DUF3659 PF12396.8 gi|240102779|ref|YP_002959088.1| - 0.027 14.4 1.9 0.22 11.4 0.5 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3659) Metallophos PF00149.28 gi|240102780|ref|YP_002959089.1| - 1.7e-27 97.3 10.3 5.4e-20 72.8 3.7 2.6 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|240102780|ref|YP_002959089.1| - 2.8e-21 76.4 3.2 2.9e-12 47.1 1.3 2.6 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|240102780|ref|YP_002959089.1| - 6.2e-06 25.7 0.7 0.35 10.2 0.1 3.3 3 0 0 3 3 3 2 Metallophosphoesterase, calcineurin superfamily PhoD PF09423.10 gi|240102780|ref|YP_002959089.1| - 0.0048 15.9 0.2 5.8 5.8 0.0 3.0 3 0 0 3 3 3 2 PhoD-like phosphatase ATP-cone PF03477.16 gi|240102781|ref|YP_002959090.1| - 1.6e-09 38.2 0.4 1.7e-08 34.9 0.0 2.6 2 1 0 2 2 2 1 ATP cone domain AAA_18 PF13238.6 gi|240102781|ref|YP_002959090.1| - 9.9e-05 22.9 0.4 0.00043 20.8 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|240102781|ref|YP_002959090.1| - 0.00063 20.0 0.4 0.0067 16.7 0.1 2.2 2 0 0 2 2 2 1 AAA domain Hpr_kinase_C PF07475.12 gi|240102781|ref|YP_002959090.1| - 0.001 18.6 0.5 0.38 10.3 0.2 2.4 2 0 0 2 2 2 2 HPr Serine kinase C-terminal domain AAA_33 PF13671.6 gi|240102781|ref|YP_002959090.1| - 0.0026 17.9 0.1 0.0076 16.4 0.0 1.9 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|240102781|ref|YP_002959090.1| - 0.0063 15.8 0.0 0.019 14.3 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|240102781|ref|YP_002959090.1| - 0.013 15.9 0.1 0.023 15.1 0.1 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|240102781|ref|YP_002959090.1| - 0.02 14.5 0.0 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|240102781|ref|YP_002959090.1| - 0.047 13.7 1.0 0.1 12.6 0.1 2.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) APS_kinase PF01583.20 gi|240102781|ref|YP_002959090.1| - 0.047 13.6 0.2 0.68 9.8 0.1 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_29 PF13555.6 gi|240102781|ref|YP_002959090.1| - 0.059 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.6 gi|240102781|ref|YP_002959090.1| - 0.097 13.1 0.0 0.33 11.4 0.0 1.9 1 0 0 1 1 1 0 AAA domain ParA PF10609.9 gi|240102781|ref|YP_002959090.1| - 0.12 11.8 1.5 0.2 11.1 0.4 1.8 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|240102781|ref|YP_002959090.1| - 0.18 11.9 3.1 0.26 11.3 1.2 2.1 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|240102782|ref|YP_002959091.1| - 0.11 12.0 0.0 0.32 10.5 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_26 PF13500.6 gi|240102782|ref|YP_002959091.1| - 0.15 11.9 1.0 0.29 10.9 0.2 1.8 2 0 0 2 2 2 0 AAA domain CBFD_NFYB_HMF PF00808.23 gi|240102783|ref|YP_002959092.1| - 0.0019 18.4 1.0 0.004 17.4 0.6 1.7 1 1 1 2 2 2 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone BRX_N PF13713.6 gi|240102783|ref|YP_002959092.1| - 0.02 14.7 0.6 0.073 12.9 0.0 2.3 2 1 0 2 2 2 0 Transcription factor BRX N-terminal domain DctP PF03480.13 gi|240102783|ref|YP_002959092.1| - 0.02 14.2 0.0 0.02 14.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 Lactamase_B PF00753.27 gi|240102784|ref|YP_002959093.1| - 7e-10 39.2 2.2 1.6e-09 38.1 2.2 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|240102784|ref|YP_002959093.1| - 0.011 15.6 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|240102784|ref|YP_002959093.1| - 0.032 13.7 0.1 0.043 13.3 0.1 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain tRNA-synt_2 PF00152.20 gi|240102785|ref|YP_002959094.1| - 1.2e-85 287.4 0.0 1.4e-85 287.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|240102785|ref|YP_002959094.1| - 2.3e-16 59.5 0.5 4.8e-16 58.5 0.5 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Amidohydro_1 PF01979.20 gi|240102786|ref|YP_002959095.1| - 8.4e-58 196.3 0.0 9.7e-58 196.1 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|240102786|ref|YP_002959095.1| - 8.7e-19 68.3 0.0 8.1e-15 55.2 0.0 2.5 2 1 1 3 3 3 3 Amidohydrolase family DAO PF01266.24 gi|240102786|ref|YP_002959095.1| - 0.047 13.3 0.1 0.28 10.7 0.0 1.9 1 1 0 2 2 2 0 FAD dependent oxidoreductase A_deaminase PF00962.22 gi|240102786|ref|YP_002959095.1| - 0.047 13.0 0.0 0.1 11.9 0.0 1.5 2 0 0 2 2 2 0 Adenosine/AMP deaminase CBS PF00571.28 gi|240102787|ref|YP_002959096.1| - 4.7e-41 139.0 17.9 3e-17 62.8 0.6 4.5 4 0 0 4 4 4 4 CBS domain PRC PF05239.16 gi|240102787|ref|YP_002959096.1| - 0.011 15.8 1.9 2 8.5 0.2 3.2 3 0 0 3 3 3 0 PRC-barrel domain GAF PF01590.26 gi|240102787|ref|YP_002959096.1| - 0.013 16.2 0.0 2.8 8.6 0.0 3.0 3 0 0 3 3 3 0 GAF domain Hrs_helical PF12210.8 gi|240102787|ref|YP_002959096.1| - 0.015 15.8 0.0 0.041 14.4 0.0 1.7 1 0 0 1 1 1 0 Hepatocyte growth factor-regulated tyrosine kinase substrate PhosphMutase PF10143.9 gi|240102788|ref|YP_002959097.1| - 8.1e-54 182.0 0.0 2.1e-53 180.7 0.0 1.7 2 0 0 2 2 2 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|240102788|ref|YP_002959097.1| - 1.4e-52 178.6 0.0 1.6e-52 178.3 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|240102788|ref|YP_002959097.1| - 2.5e-09 37.2 0.0 8.4e-08 32.2 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|240102788|ref|YP_002959097.1| - 0.0019 17.7 0.0 0.26 10.6 0.0 2.2 2 0 0 2 2 2 2 Sulfatase DUF2384 PF09722.10 gi|240102788|ref|YP_002959097.1| - 0.1 12.7 0.0 0.25 11.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) DUF996 PF06195.13 gi|240102789|ref|YP_002959098.1| - 0.017 15.4 2.2 0.027 14.8 2.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF996) Aldo_ket_red PF00248.21 gi|240102790|ref|YP_002959099.1| - 1.6e-64 217.9 0.0 8.1e-63 212.3 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family AFOR_N PF02730.15 gi|240102791|ref|YP_002959100.1| - 1.4e-69 233.9 0.0 2.6e-69 233.0 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|240102791|ref|YP_002959100.1| - 2.2e-66 224.5 0.0 2.9e-66 224.0 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Glyco_hydro_65C PF03633.15 gi|240102791|ref|YP_002959100.1| - 0.22 11.5 1.0 50 3.9 0.0 3.2 3 0 0 3 3 3 0 Glycosyl hydrolase family 65, C-terminal domain AFOR_C PF01314.18 gi|240102792|ref|YP_002959101.1| - 7e-29 101.0 0.0 8.6e-29 100.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 TrkA_C PF02080.21 gi|240102793|ref|YP_002959102.1| - 2.1e-16 59.5 0.2 4.3e-16 58.5 0.2 1.6 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.19 gi|240102793|ref|YP_002959102.1| - 3.4e-10 40.2 6.1 5.9e-10 39.5 6.1 1.4 1 0 0 1 1 1 1 PhoU domain Castor_Poll_mid PF06241.12 gi|240102793|ref|YP_002959102.1| - 0.094 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Castor and Pollux, part of voltage-gated ion channel TrkA_C PF02080.21 gi|240102794|ref|YP_002959103.1| - 4e-14 52.2 0.0 7.6e-14 51.3 0.0 1.4 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.19 gi|240102794|ref|YP_002959103.1| - 1.7e-09 38.0 3.6 3.4e-09 37.0 3.6 1.5 1 0 0 1 1 1 1 PhoU domain UCH_N PF16674.5 gi|240102794|ref|YP_002959103.1| - 0.031 14.2 0.2 0.073 13.0 0.1 1.6 2 0 0 2 2 2 0 N-terminal of ubiquitin carboxyl-terminal hydrolase 37 MgtE PF01769.16 gi|240102795|ref|YP_002959104.1| - 1.8e-30 105.9 32.7 2.3e-16 60.3 11.0 3.1 3 0 0 3 3 3 2 Divalent cation transporter Fig1 PF12351.8 gi|240102795|ref|YP_002959104.1| - 0.22 11.4 11.7 0.24 11.3 1.3 2.7 3 0 0 3 3 3 0 Ca2+ regulator and membrane fusion protein Fig1 B12D PF06522.11 gi|240102795|ref|YP_002959104.1| - 0.26 11.1 0.3 1.4 8.7 0.3 2.3 1 0 0 1 1 1 0 NADH-ubiquinone reductase complex 1 MLRQ subunit MgtE PF01769.16 gi|240102796|ref|YP_002959105.1| - 9.7e-36 122.9 29.9 2.6e-22 79.5 6.4 3.3 2 1 1 3 3 3 2 Divalent cation transporter SLATT_fungal PF18142.1 gi|240102796|ref|YP_002959105.1| - 0.14 12.2 0.1 0.3 11.1 0.1 1.5 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain AP_endonuc_2 PF01261.24 gi|240102797|ref|YP_002959106.1| - 1.4e-31 109.6 0.0 1.7e-31 109.3 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Amidohydro_2 PF04909.14 gi|240102797|ref|YP_002959106.1| - 0.019 14.8 0.2 0.2 11.4 0.0 2.0 1 1 1 2 2 2 0 Amidohydrolase Succ_CoA_lig PF13607.6 gi|240102798|ref|YP_002959107.1| - 5.2e-57 191.5 4.2 1.4e-55 186.9 0.4 2.9 4 0 0 4 4 4 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|240102798|ref|YP_002959107.1| - 1.5e-27 96.4 0.2 4.6e-25 88.4 0.0 3.2 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|240102798|ref|YP_002959107.1| - 1.1e-14 54.9 0.2 3.2e-14 53.4 0.2 1.9 1 0 0 1 1 1 1 CoA binding domain Asparaginase_C PF17763.1 gi|240102798|ref|YP_002959107.1| - 0.0028 17.9 0.1 0.033 14.4 0.0 2.6 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain Ligase_CoA PF00549.19 gi|240102798|ref|YP_002959107.1| - 0.015 15.1 0.0 0.042 13.7 0.0 1.7 1 0 0 1 1 1 0 CoA-ligase GFO_IDH_MocA PF01408.22 gi|240102798|ref|YP_002959107.1| - 0.069 14.0 0.2 0.66 10.8 0.0 2.4 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|240102798|ref|YP_002959107.1| - 0.074 13.6 1.3 1.4 9.5 0.0 3.3 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Mur_ligase_C PF02875.21 gi|240102798|ref|YP_002959107.1| - 0.13 12.6 0.0 8.3 6.7 0.0 3.1 3 0 0 3 3 3 0 Mur ligase family, glutamate ligase domain ATP-grasp_5 PF13549.6 gi|240102799|ref|YP_002959108.1| - 2.8e-82 275.5 0.2 3.2e-82 275.3 0.2 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|240102799|ref|YP_002959108.1| - 1e-05 25.2 0.2 1.4e-05 24.7 0.2 1.6 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|240102799|ref|YP_002959108.1| - 0.0021 17.6 0.0 0.0056 16.2 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Band_7_1 PF13421.6 gi|240102800|ref|YP_002959109.1| - 1.2e-35 123.1 0.1 1.7e-35 122.6 0.1 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.25 gi|240102800|ref|YP_002959109.1| - 3.3e-20 72.9 0.1 4.7e-20 72.3 0.1 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family zinc_ribbon_2 PF13240.6 gi|240102800|ref|YP_002959109.1| - 7e-14 51.0 12.2 1.8e-09 37.0 4.5 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|240102800|ref|YP_002959109.1| - 6.7e-12 44.4 12.8 1.2e-08 34.1 4.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|240102800|ref|YP_002959109.1| - 9e-11 41.6 5.2 2.6e-10 40.2 5.3 1.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|240102800|ref|YP_002959109.1| - 9.9e-06 26.2 3.9 0.00017 22.3 0.3 2.3 2 0 0 2 2 2 1 zinc-ribbon family UPF0547 PF10571.9 gi|240102800|ref|YP_002959109.1| - 3.3e-05 23.9 19.0 0.0028 17.7 8.1 2.4 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.11 gi|240102800|ref|YP_002959109.1| - 8.9e-05 22.1 6.3 0.12 12.0 0.6 3.4 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|240102800|ref|YP_002959109.1| - 0.072 13.0 10.4 2 8.4 0.8 3.3 3 0 0 3 3 3 0 Nudix N-terminal DUF2116 PF09889.9 gi|240102800|ref|YP_002959109.1| - 0.11 12.6 8.1 0.5 10.4 3.9 2.4 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Totivirus_coat PF05518.11 gi|240102800|ref|YP_002959109.1| - 0.24 9.4 1.1 0.3 9.1 1.1 1.1 1 0 0 1 1 1 0 Totivirus coat protein DHHC PF01529.20 gi|240102800|ref|YP_002959109.1| - 0.26 11.4 2.9 0.42 10.7 1.2 2.0 1 1 1 2 2 2 0 DHHC palmitoyltransferase zf-C4H2 PF10146.9 gi|240102800|ref|YP_002959109.1| - 0.38 11.0 1.1 0.53 10.5 1.1 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein PI31_Prot_C PF08577.11 gi|240102800|ref|YP_002959109.1| - 0.41 11.9 7.8 3.1 9.0 7.5 2.3 2 1 0 2 2 2 0 PI31 proteasome regulator zf-CHCC PF10276.9 gi|240102800|ref|YP_002959109.1| - 0.44 10.7 7.2 5.3 7.2 0.3 3.2 3 0 0 3 3 3 0 Zinc-finger domain DNA_ligase_ZBD PF03119.16 gi|240102800|ref|YP_002959109.1| - 0.61 10.2 11.7 1.4 9.0 0.2 3.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf_UBZ PF18439.1 gi|240102800|ref|YP_002959109.1| - 1.3 8.7 6.7 5.2 6.8 0.2 3.2 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF3268 PF11672.8 gi|240102800|ref|YP_002959109.1| - 1.8 8.9 4.4 6.4 7.1 0.9 2.4 2 0 0 2 2 2 0 zinc-finger-containing domain zf-C3HC4_3 PF13920.6 gi|240102800|ref|YP_002959109.1| - 3.1 7.8 9.7 22 5.0 0.4 2.8 1 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF2256 PF10013.9 gi|240102800|ref|YP_002959109.1| - 3.1 8.0 7.0 20 5.4 0.2 3.2 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) Rad50_zn_hook PF04423.14 gi|240102800|ref|YP_002959109.1| - 3.5 7.5 5.1 37 4.3 0.1 3.0 2 1 1 3 3 3 0 Rad50 zinc hook motif Zn-ribbon_8 PF09723.10 gi|240102800|ref|YP_002959109.1| - 4.1 7.6 10.3 9.2 6.5 3.7 2.9 1 1 2 3 3 3 0 Zinc ribbon domain PknG_rubred PF16919.5 gi|240102800|ref|YP_002959109.1| - 4.3 7.5 11.6 4.4 7.5 2.7 3.8 2 2 2 4 4 4 0 Protein kinase G rubredoxin domain zinc-ribbons_6 PF07191.12 gi|240102800|ref|YP_002959109.1| - 4.6 7.3 6.1 8.4 6.5 2.6 2.3 1 1 1 2 2 2 0 zinc-ribbons Prok-RING_1 PF14446.6 gi|240102800|ref|YP_002959109.1| - 7.5 6.6 8.3 2.2e+02 1.9 8.3 2.3 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-Di19 PF05605.12 gi|240102800|ref|YP_002959109.1| - 8.1 6.8 13.3 23 5.4 6.3 3.0 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_4 PF13717.6 gi|240102802|ref|YP_002959111.1| - 5.8e-06 26.1 1.7 4e-05 23.4 1.8 2.1 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|240102802|ref|YP_002959111.1| - 8.6e-05 22.2 1.7 0.072 12.9 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.19 gi|240102802|ref|YP_002959111.1| - 0.00076 19.5 0.3 0.0013 18.7 0.3 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_1 PF14446.6 gi|240102802|ref|YP_002959111.1| - 0.0015 18.4 1.6 0.0024 17.8 1.6 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-CHCC PF10276.9 gi|240102802|ref|YP_002959111.1| - 0.0069 16.4 0.7 0.21 11.7 0.1 2.3 2 0 0 2 2 2 1 Zinc-finger domain DUF2207 PF09972.9 gi|240102802|ref|YP_002959111.1| - 0.011 14.5 0.0 0.014 14.2 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ADK_lid PF05191.14 gi|240102802|ref|YP_002959111.1| - 0.076 13.0 0.9 0.21 11.6 0.0 2.0 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-ISL3 PF14690.6 gi|240102802|ref|YP_002959111.1| - 0.15 12.8 0.5 4.7 8.0 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_CPXG PF14255.6 gi|240102802|ref|YP_002959111.1| - 0.15 12.0 1.1 1.1 9.2 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG DZR PF12773.7 gi|240102802|ref|YP_002959111.1| - 0.23 11.5 1.1 0.4 10.7 1.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_9 PF14369.6 gi|240102802|ref|YP_002959111.1| - 0.27 11.5 4.0 2.9 8.2 4.4 2.1 1 1 1 2 2 2 0 zinc-ribbon zf-C2H2_4 PF13894.6 gi|240102802|ref|YP_002959111.1| - 0.29 12.1 2.9 8.6 7.5 0.3 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zf-RING_7 PF02591.15 gi|240102802|ref|YP_002959111.1| - 0.53 10.5 3.0 4.5 7.5 0.1 2.5 2 0 0 2 2 2 0 C4-type zinc ribbon domain CpXC PF14353.6 gi|240102802|ref|YP_002959111.1| - 0.59 10.2 3.6 3.7 7.6 0.2 2.4 1 1 1 2 2 2 0 CpXC protein zf-Di19 PF05605.12 gi|240102802|ref|YP_002959111.1| - 1 9.7 6.7 1.8 8.9 1.0 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-ribbon_3 PF13248.6 gi|240102802|ref|YP_002959111.1| - 1 8.9 5.9 1.9 8.0 0.7 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|240102802|ref|YP_002959111.1| - 1.4 9.5 4.8 11 6.7 0.7 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.9 gi|240102802|ref|YP_002959111.1| - 2.6 8.2 6.4 9.7 6.4 6.4 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF1451 PF07295.11 gi|240102802|ref|YP_002959111.1| - 4.3 7.4 4.3 1.1 9.2 1.1 1.6 2 0 0 2 2 2 0 Zinc-ribbon containing domain FYDLN_acid PF09538.10 gi|240102802|ref|YP_002959111.1| - 8.4 7.1 7.1 2.2 9.0 2.5 2.1 2 1 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-Mss51 PF13824.6 gi|240102803|ref|YP_002959112.1| - 0.0027 17.8 2.6 1 9.5 0.6 2.5 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 DZR PF12773.7 gi|240102803|ref|YP_002959112.1| - 0.0076 16.3 0.2 0.016 15.2 0.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.6 gi|240102803|ref|YP_002959112.1| - 0.015 15.2 0.4 0.035 14.0 0.4 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|240102803|ref|YP_002959112.1| - 0.017 14.8 4.2 0.081 12.7 4.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|240102803|ref|YP_002959112.1| - 0.062 13.0 1.0 0.062 13.0 1.0 1.7 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|240102803|ref|YP_002959112.1| - 0.075 13.2 1.0 0.18 12.0 1.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Mu-like_Com PF10122.9 gi|240102803|ref|YP_002959112.1| - 0.077 12.5 3.1 1.9 8.0 0.1 2.9 2 1 1 3 3 3 0 Mu-like prophage protein Com Vps36-NZF-N PF16988.5 gi|240102803|ref|YP_002959112.1| - 0.099 12.1 2.1 0.15 11.5 0.2 2.0 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain HypA PF01155.19 gi|240102803|ref|YP_002959112.1| - 0.099 12.7 0.1 0.26 11.3 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|240102803|ref|YP_002959112.1| - 0.12 11.9 3.8 0.49 9.9 3.8 1.9 1 1 0 1 1 1 0 zinc-ribbon domain HNH PF01844.23 gi|240102803|ref|YP_002959112.1| - 0.22 11.7 3.0 3 8.1 0.1 2.9 3 0 0 3 3 3 0 HNH endonuclease AIRC PF00731.20 gi|240102804|ref|YP_002959113.1| - 2.3e-55 186.2 0.2 2.6e-55 186.1 0.2 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.6 gi|240102804|ref|YP_002959113.1| - 0.00082 19.1 0.2 0.0011 18.8 0.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase PrpR_N PF06506.11 gi|240102804|ref|YP_002959113.1| - 0.021 14.4 0.1 0.028 14.0 0.1 1.3 1 0 0 1 1 1 0 Propionate catabolism activator ATPase PF06745.13 gi|240102805|ref|YP_002959114.1| - 0.017 14.5 0.4 0.11 11.9 0.1 2.3 2 1 0 2 2 2 0 KaiC GARS_A PF01071.19 gi|240102807|ref|YP_002959116.1| - 4.7e-59 199.4 0.0 1e-58 198.3 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|240102807|ref|YP_002959116.1| - 2.9e-24 85.7 0.3 3.7e-23 82.1 0.1 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|240102807|ref|YP_002959116.1| - 8.5e-13 48.4 2.8 4.4e-11 42.9 0.1 3.1 2 1 1 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|240102807|ref|YP_002959116.1| - 1.5e-05 25.1 0.0 2.5e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|240102807|ref|YP_002959116.1| - 7.5e-05 22.4 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_4 PF13535.6 gi|240102807|ref|YP_002959116.1| - 0.00039 20.0 0.0 0.16 11.5 0.2 3.0 2 1 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|240102807|ref|YP_002959116.1| - 0.00061 19.1 0.0 0.018 14.3 0.0 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|240102807|ref|YP_002959116.1| - 0.002 17.7 0.0 0.0051 16.4 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|240102807|ref|YP_002959116.1| - 0.0052 16.3 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Polyketide_cyc2 PF10604.9 gi|240102807|ref|YP_002959116.1| - 0.021 15.1 0.1 0.17 12.2 0.1 2.2 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport Vps4_C PF09336.10 gi|240102807|ref|YP_002959116.1| - 0.083 12.9 0.1 3.7 7.6 0.0 3.1 3 0 0 3 3 3 0 Vps4 C terminal oligomerisation domain DUF555 PF04475.12 gi|240102807|ref|YP_002959116.1| - 0.11 12.8 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF555) DUF1297 PF06973.12 gi|240102808|ref|YP_002959117.1| - 3.6e-80 268.0 0.0 5e-80 267.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|240102808|ref|YP_002959117.1| - 2.3e-42 143.8 0.0 3.6e-42 143.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) MFS_1 PF07690.16 gi|240102810|ref|YP_002959119.1| - 2.6e-16 59.5 40.2 2.6e-16 59.5 40.2 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily PurS PF02700.14 gi|240102811|ref|YP_002959120.1| - 7.4e-24 83.7 0.0 8.3e-24 83.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.6 gi|240102812|ref|YP_002959121.1| - 5.1e-50 170.0 0.0 6.1e-50 169.7 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|240102812|ref|YP_002959121.1| - 1.1e-11 44.8 0.0 1.7e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|240102812|ref|YP_002959121.1| - 4.7e-10 39.4 0.0 1.7e-09 37.5 0.0 1.8 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|240102812|ref|YP_002959121.1| - 6.9e-10 39.0 0.0 1.2e-09 38.2 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|240102812|ref|YP_002959121.1| - 1.9e-09 37.7 0.0 5.7e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 SNO glutamine amidotransferase family DUF4131 PF13567.6 gi|240102812|ref|YP_002959121.1| - 0.0007 19.3 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) Peptidase_C26 PF07722.13 gi|240102812|ref|YP_002959121.1| - 0.001 18.9 0.0 0.0027 17.5 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 BPL_N PF09825.9 gi|240102812|ref|YP_002959121.1| - 0.17 11.0 0.1 4.4 6.3 0.1 2.1 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal AIRS_C PF02769.22 gi|240102813|ref|YP_002959122.1| - 3.2e-58 196.3 2.6 2e-36 125.5 0.1 2.5 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|240102813|ref|YP_002959122.1| - 3.7e-48 162.1 0.2 1.2e-24 86.8 0.0 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|240102813|ref|YP_002959122.1| - 4.1e-07 30.4 0.3 1.2e-06 28.9 0.3 1.9 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain DUF1297 PF06973.12 gi|240102814|ref|YP_002959123.1| - 1.5e-73 246.4 0.0 2e-73 246.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|240102814|ref|YP_002959123.1| - 6.9e-32 110.0 0.0 1.3e-31 109.1 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|240102814|ref|YP_002959123.1| - 0.0074 16.4 0.0 0.038 14.0 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|240102814|ref|YP_002959123.1| - 0.11 11.9 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF835 PF05763.12 gi|240102815|ref|YP_002959124.1| - 4.4e-33 113.9 0.4 7.4e-33 113.2 0.1 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF835) Trp_oprn_chp PF09534.10 gi|240102815|ref|YP_002959124.1| - 0.18 11.5 0.2 0.46 10.3 0.2 1.6 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) IMPDH PF00478.25 gi|240102816|ref|YP_002959125.1| - 1.2e-150 501.3 8.4 1.4e-150 501.1 8.4 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|240102816|ref|YP_002959125.1| - 4.5e-29 100.7 6.2 2.2e-15 56.8 0.3 3.1 2 1 1 3 3 3 2 CBS domain NMO PF03060.15 gi|240102816|ref|YP_002959125.1| - 1.3e-08 34.7 8.9 0.003 17.0 0.0 2.9 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|240102816|ref|YP_002959125.1| - 2.2e-07 30.3 11.0 1.8e-06 27.3 10.2 2.4 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|240102816|ref|YP_002959125.1| - 3.9e-05 23.0 5.3 7e-05 22.1 5.3 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|240102816|ref|YP_002959125.1| - 7.4e-05 22.3 4.3 7.4e-05 22.3 4.3 2.1 2 1 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|240102816|ref|YP_002959125.1| - 0.09 12.1 11.2 0.047 13.0 2.2 3.2 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|240102816|ref|YP_002959125.1| - 0.12 11.5 2.2 0.31 10.2 1.8 1.8 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase GMP_synt_C PF00958.22 gi|240102817|ref|YP_002959126.1| - 1.6e-34 117.8 0.0 3e-34 116.9 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|240102817|ref|YP_002959126.1| - 1.9e-14 53.4 0.1 4.4e-07 29.3 0.0 2.2 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|240102817|ref|YP_002959126.1| - 3.2e-06 26.8 0.0 0.00047 19.7 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|240102817|ref|YP_002959126.1| - 1.5e-05 24.7 0.0 3.3e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|240102817|ref|YP_002959126.1| - 2.1e-05 23.5 0.1 0.0085 14.9 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|240102817|ref|YP_002959126.1| - 0.0022 17.8 0.0 0.0044 16.8 0.0 1.5 1 0 0 1 1 1 1 PP-loop family Asn_synthase PF00733.21 gi|240102817|ref|YP_002959126.1| - 0.0032 17.2 0.0 0.0055 16.4 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|240102817|ref|YP_002959126.1| - 0.016 15.3 0.0 0.024 14.7 0.0 1.4 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family DUF104 PF01954.16 gi|240102818|ref|YP_002959127.1| - 9e-18 64.5 1.5 1.1e-17 64.1 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 gi|240102819|ref|YP_002959128.1| - 4.1e-10 40.2 0.8 5.4e-10 39.8 0.8 1.2 1 0 0 1 1 1 1 PIN domain PIN_5 PF08745.11 gi|240102819|ref|YP_002959128.1| - 0.0014 18.0 0.1 0.014 14.8 0.0 2.0 1 1 0 2 2 2 1 PINc domain ribonuclease RNase_Zc3h12a PF11977.8 gi|240102819|ref|YP_002959128.1| - 0.017 14.9 0.0 0.02 14.7 0.0 1.1 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain DUF4411 PF14367.6 gi|240102819|ref|YP_002959128.1| - 0.025 14.5 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) PIN_2 PF10130.9 gi|240102819|ref|YP_002959128.1| - 0.028 14.7 0.0 0.036 14.3 0.0 1.3 1 1 0 1 1 1 0 PIN domain PIN_3 PF13470.6 gi|240102819|ref|YP_002959128.1| - 0.05 14.4 0.0 0.08 13.7 0.0 1.4 1 1 0 1 1 1 0 PIN domain PIN_4 PF13638.6 gi|240102819|ref|YP_002959128.1| - 0.19 12.0 0.0 1.6 9.0 0.0 2.2 2 1 0 2 2 2 0 PIN domain GATase PF00117.28 gi|240102820|ref|YP_002959129.1| - 3.3e-46 157.5 0.0 3.9e-46 157.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|240102820|ref|YP_002959129.1| - 1.3e-14 54.5 0.1 5.4e-13 49.2 0.0 2.6 1 1 1 2 2 2 1 Peptidase C26 SNO PF01174.19 gi|240102820|ref|YP_002959129.1| - 0.098 12.5 0.0 2.9 7.7 0.0 2.0 1 1 0 2 2 2 0 SNO glutamine amidotransferase family DUF2101 PF09874.9 gi|240102822|ref|YP_002959131.1| - 3.1e-76 255.7 9.9 3.6e-76 255.5 9.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2101) FA_desaturase PF00487.24 gi|240102822|ref|YP_002959131.1| - 0.37 10.6 7.5 0.48 10.2 7.5 1.2 1 0 0 1 1 1 0 Fatty acid desaturase DUF2341 PF10102.9 gi|240102823|ref|YP_002959132.1| - 5.2e-20 71.8 0.1 1.6e-19 70.3 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) DUF1364 PF07102.12 gi|240102826|ref|YP_002959135.1| - 0.09 12.6 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1364) Class_IIIsignal PF04021.12 gi|240102826|ref|YP_002959135.1| - 0.34 10.9 5.1 0.66 10.0 5.1 1.4 1 0 0 1 1 1 0 Class III signal peptide DUF4115 PF13464.6 gi|240102827|ref|YP_002959136.1| - 0.05 13.8 0.1 0.25 11.5 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4115) PPC PF04151.15 gi|240102827|ref|YP_002959136.1| - 0.15 13.2 1.8 0.4 11.8 0.2 2.2 2 1 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain Class_IIIsignal PF04021.12 gi|240102828|ref|YP_002959137.1| - 6.7e-07 29.1 2.7 6.7e-07 29.1 2.7 1.8 2 0 0 2 2 2 1 Class III signal peptide DUF3038 PF11237.8 gi|240102829|ref|YP_002959138.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) SSPI PF14098.6 gi|240102829|ref|YP_002959138.1| - 0.25 11.5 2.7 5.4 7.2 0.0 3.2 3 0 0 3 3 3 0 Small, acid-soluble spore protein I Tubulin PF00091.25 gi|240102830|ref|YP_002959139.1| - 3.6e-29 102.4 0.3 4.7e-27 95.5 0.3 2.3 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|240102830|ref|YP_002959139.1| - 0.14 11.3 0.0 0.45 9.7 0.0 1.8 1 1 1 2 2 2 0 Tubulin like SQHop_cyclase_N PF13249.6 gi|240102831|ref|YP_002959140.1| - 3.2e-12 46.1 0.0 0.021 13.9 0.0 4.9 4 1 1 5 5 5 4 Squalene-hopene cyclase N-terminal domain SQHop_cyclase_C PF13243.6 gi|240102831|ref|YP_002959140.1| - 1.2e-08 34.5 0.2 0.75 8.8 0.0 5.5 3 3 2 5 5 5 4 Squalene-hopene cyclase C-terminal domain TED_complement PF07678.14 gi|240102831|ref|YP_002959140.1| - 5.7e-08 32.1 0.0 0.00016 20.8 0.0 3.2 3 0 0 3 3 3 2 A-macroglobulin TED domain Prenyltrans PF00432.21 gi|240102831|ref|YP_002959140.1| - 6.3e-08 32.2 5.4 0.0096 15.6 0.0 4.8 4 0 0 4 4 4 2 Prenyltransferase and squalene oxidase repeat CBM_10 PF02013.16 gi|240102831|ref|YP_002959140.1| - 0.013 15.9 1.9 6 7.4 0.1 3.7 3 0 0 3 3 3 0 Cellulose or protein binding domain Radical_SAM PF04055.21 gi|240102832|ref|YP_002959141.1| - 2e-27 96.6 0.0 3.7e-27 95.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|240102832|ref|YP_002959141.1| - 9.9e-23 80.3 0.0 1.9e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Fer4_12 PF13353.6 gi|240102832|ref|YP_002959141.1| - 0.0002 21.7 0.1 0.011 16.0 0.1 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain Hydrolase PF00702.26 gi|240102832|ref|YP_002959141.1| - 0.16 12.3 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase AhpC-TSA PF00578.21 gi|240102832|ref|YP_002959141.1| - 0.2 11.6 0.0 0.43 10.5 0.0 1.5 1 0 0 1 1 1 0 AhpC/TSA family DUF202 PF02656.15 gi|240102834|ref|YP_002959143.1| - 0.0043 17.5 0.5 0.13 12.8 0.5 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF202) ABC_trans_CmpB PF06541.11 gi|240102834|ref|YP_002959143.1| - 0.074 13.3 1.1 0.18 12.0 0.0 1.9 2 0 0 2 2 2 0 Putative ABC-transporter type IV Radical_SAM PF04055.21 gi|240102837|ref|YP_002959146.1| - 2.3e-08 34.6 0.0 5.3e-08 33.4 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|240102837|ref|YP_002959146.1| - 0.15 12.4 0.0 0.61 10.3 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF45 PF01863.17 gi|240102838|ref|YP_002959147.1| - 3.6e-47 161.1 0.0 5.6e-47 160.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|240102838|ref|YP_002959147.1| - 0.0024 18.0 0.3 0.0046 17.0 0.0 1.5 2 0 0 2 2 2 1 WLM domain Peptidase_M56 PF05569.11 gi|240102838|ref|YP_002959147.1| - 0.12 11.6 0.2 0.18 11.0 0.2 1.2 1 0 0 1 1 1 0 BlaR1 peptidase M56 NfeD PF01957.18 gi|240102839|ref|YP_002959148.1| - 4.8e-17 62.1 0.7 4.8e-17 62.1 0.7 1.4 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CoA_binding_2 PF13380.6 gi|240102841|ref|YP_002959150.1| - 2.8e-40 137.4 0.0 3.7e-40 137.0 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|240102841|ref|YP_002959150.1| - 1.9e-09 38.1 0.0 3e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain PIN_2 PF10130.9 gi|240102842|ref|YP_002959151.1| - 1.1e-10 41.8 0.0 1.2e-10 41.7 0.0 1.1 1 0 0 1 1 1 1 PIN domain UPF0020 PF01170.18 gi|240102844|ref|YP_002959153.1| - 7.2e-15 55.2 0.0 2.3e-12 47.0 0.0 3.2 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|240102844|ref|YP_002959153.1| - 0.00013 21.8 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|240102844|ref|YP_002959153.1| - 0.00062 19.5 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 DNA methylase Methyltransf_25 PF13649.6 gi|240102844|ref|YP_002959153.1| - 0.0015 19.2 0.0 0.0032 18.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240102844|ref|YP_002959153.1| - 0.0052 16.6 0.0 0.0092 15.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240102844|ref|YP_002959153.1| - 0.01 16.4 0.0 0.058 14.1 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|240102844|ref|YP_002959153.1| - 0.057 13.0 0.0 0.086 12.4 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase ANAPC3 PF12895.7 gi|240102845|ref|YP_002959154.1| - 0.0098 16.1 0.0 8.1 6.7 0.1 3.6 4 0 0 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 gi|240102845|ref|YP_002959154.1| - 0.012 16.1 0.2 1.8 9.1 0.0 3.9 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|240102845|ref|YP_002959154.1| - 0.025 15.2 2.5 0.51 11.1 0.1 4.3 6 0 0 6 6 6 0 Tetratricopeptide repeat Phage_ABA_S PF18066.1 gi|240102845|ref|YP_002959154.1| - 0.049 14.3 0.0 0.13 13.0 0.0 1.7 1 0 0 1 1 1 0 Phage ABA sandwich domain Nup96 PF12110.8 gi|240102845|ref|YP_002959154.1| - 0.19 10.8 0.0 14 4.7 0.0 2.3 2 0 0 2 2 2 0 Nuclear protein 96 UPF0047 PF01894.17 gi|240102847|ref|YP_002959156.1| - 2.4e-35 121.1 0.0 2.8e-35 120.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Peptidase_M55 PF04951.13 gi|240102848|ref|YP_002959157.1| - 1.3e-85 287.0 0.0 1.5e-85 286.8 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase ABC_tran PF00005.27 gi|240102850|ref|YP_002959159.1| - 7.2e-20 71.9 0.0 1e-19 71.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240102850|ref|YP_002959159.1| - 5.9e-13 49.3 0.5 2.2e-06 27.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240102850|ref|YP_002959159.1| - 6.5e-08 32.3 0.1 0.0066 15.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|240102850|ref|YP_002959159.1| - 1.1e-05 26.1 0.1 1.7e-05 25.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|240102850|ref|YP_002959159.1| - 0.00085 19.0 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|240102850|ref|YP_002959159.1| - 0.014 15.1 0.0 0.047 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|240102850|ref|YP_002959159.1| - 0.027 13.3 0.3 0.043 12.6 0.3 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_13 PF13166.6 gi|240102850|ref|YP_002959159.1| - 0.046 12.4 0.1 1.3 7.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain KdpD PF02702.17 gi|240102850|ref|YP_002959159.1| - 0.18 11.3 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_15 PF13175.6 gi|240102850|ref|YP_002959159.1| - 0.2 11.3 0.2 0.4 10.3 0.1 1.4 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane_4 PF12730.7 gi|240102852|ref|YP_002959161.1| - 1e-08 35.4 18.1 1e-08 35.4 18.1 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|240102852|ref|YP_002959161.1| - 3.6e-08 33.1 23.3 1.4e-06 27.8 23.1 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|240102852|ref|YP_002959161.1| - 1.2e-05 24.6 24.7 1.6e-05 24.2 24.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|240102852|ref|YP_002959161.1| - 0.0012 18.4 20.5 0.0023 17.5 20.5 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF3659 PF12396.8 gi|240102853|ref|YP_002959162.1| - 0.14 12.1 0.0 0.36 10.8 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3659) HBB PF06777.11 gi|240102854|ref|YP_002959163.1| - 1.4e-61 207.5 0.0 2.5e-61 206.7 0.0 1.4 1 0 0 1 1 1 1 Helical and beta-bridge domain Helicase_C_2 PF13307.6 gi|240102854|ref|YP_002959163.1| - 1.9e-38 132.3 0.1 1e-37 129.9 0.0 2.0 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|240102854|ref|YP_002959163.1| - 4.7e-33 114.3 1.0 1.3e-32 112.8 1.2 1.6 2 0 0 2 2 2 1 DEAD_2 ResIII PF04851.15 gi|240102854|ref|YP_002959163.1| - 2.7e-09 37.3 0.0 8.8e-09 35.6 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|240102854|ref|YP_002959163.1| - 5.5e-08 32.8 0.0 3.2e-05 23.8 0.0 2.6 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|240102854|ref|YP_002959163.1| - 0.0071 16.1 0.0 0.026 14.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|240102854|ref|YP_002959163.1| - 0.01 16.2 0.1 0.021 15.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain Antimicrobial17 PF08129.11 gi|240102854|ref|YP_002959163.1| - 0.015 15.3 0.0 0.039 14.0 0.0 1.7 1 0 0 1 1 1 0 Alpha/beta enterocin family AAA_25 PF13481.6 gi|240102854|ref|YP_002959163.1| - 0.068 12.7 0.0 0.19 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|240102854|ref|YP_002959163.1| - 0.14 12.4 0.5 4.1 7.7 0.1 2.6 1 1 0 2 2 2 0 AAA domain PEGA PF08308.11 gi|240102856|ref|YP_002959165.1| - 1e-87 288.0 41.5 1.6e-18 66.3 3.3 5.6 5 0 0 5 5 5 5 PEGA domain Pkinase PF00069.25 gi|240102856|ref|YP_002959165.1| - 2.9e-43 148.1 0.0 5e-43 147.4 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|240102856|ref|YP_002959165.1| - 2.5e-30 105.6 0.0 4.8e-30 104.7 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase CarboxypepD_reg PF13620.6 gi|240102856|ref|YP_002959165.1| - 4.9e-18 65.2 18.8 0.00025 21.3 0.6 5.9 5 0 0 5 5 5 5 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|240102856|ref|YP_002959165.1| - 1.8e-06 27.8 25.3 0.0061 16.5 1.1 6.0 2 2 3 5 5 5 3 CarboxypepD_reg-like domain DUF2846 PF11008.8 gi|240102856|ref|YP_002959165.1| - 4.3e-06 26.7 2.3 0.036 14.1 0.2 4.0 2 1 1 3 3 3 2 Protein of unknown function (DUF2846) DUF5122 PF17164.4 gi|240102856|ref|YP_002959165.1| - 0.00039 20.6 52.7 0.15 12.4 2.2 8.4 9 0 0 9 9 8 4 Domain of unknown function (DUF5122) beta-propeller Fn3-like PF14310.6 gi|240102856|ref|YP_002959165.1| - 0.00055 20.0 1.1 0.88 9.7 0.0 4.3 5 1 0 5 5 3 1 Fibronectin type III-like domain NusG_II PF07009.11 gi|240102856|ref|YP_002959165.1| - 0.00058 20.0 6.2 1.4 9.1 0.1 5.3 2 1 3 5 5 5 1 NusG domain II FixG_C PF11614.8 gi|240102856|ref|YP_002959165.1| - 0.00094 19.4 9.4 6 7.1 0.1 5.2 3 2 1 5 5 5 1 IG-like fold at C-terminal of FixG, putative oxidoreductase Kinase-like PF14531.6 gi|240102856|ref|YP_002959165.1| - 0.0038 16.6 0.0 0.036 13.4 0.0 2.1 2 0 0 2 2 2 1 Kinase-like Med13_C PF06333.12 gi|240102856|ref|YP_002959165.1| - 0.021 14.1 10.0 0.034 13.4 10.0 1.2 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain Kelch_5 PF13854.6 gi|240102856|ref|YP_002959165.1| - 0.034 14.1 15.1 4.6 7.3 0.1 6.5 7 0 0 7 7 7 0 Kelch motif RCC1_2 PF13540.6 gi|240102856|ref|YP_002959165.1| - 0.081 12.8 0.2 29 4.6 0.0 4.3 5 0 0 5 5 4 0 Regulator of chromosome condensation (RCC1) repeat PQQ PF01011.21 gi|240102856|ref|YP_002959165.1| - 0.1 12.6 22.6 11 6.2 0.1 6.9 6 0 0 6 6 6 0 PQQ enzyme repeat MscS_porin PF12795.7 gi|240102856|ref|YP_002959165.1| - 0.11 12.0 2.5 0.21 11.1 2.5 1.4 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain RIO1 PF01163.22 gi|240102856|ref|YP_002959165.1| - 0.16 11.5 0.0 0.45 10.1 0.0 1.7 1 1 0 1 1 1 0 RIO1 family Podoplanin PF05808.11 gi|240102856|ref|YP_002959165.1| - 0.29 11.2 9.7 0.68 10.0 9.7 1.6 1 0 0 1 1 1 0 Podoplanin NHL PF01436.21 gi|240102856|ref|YP_002959165.1| - 0.34 11.0 24.4 19 5.5 0.1 7.3 7 0 0 7 7 7 0 NHL repeat RHS PF03527.14 gi|240102856|ref|YP_002959165.1| - 0.52 10.1 15.0 87 3.0 0.1 6.4 6 0 0 6 6 6 0 RHS protein DUF1533 PF07550.11 gi|240102856|ref|YP_002959165.1| - 0.83 9.6 10.5 1.3 9.0 0.1 4.9 5 0 0 5 5 4 0 Protein of unknown function (DUF1533) DUF3389 PF11869.8 gi|240102856|ref|YP_002959165.1| - 1.7 8.9 3.3 2.3 8.5 0.1 2.9 5 0 0 5 5 2 0 Protein of unknown function (DUF3389) MGC-24 PF05283.11 gi|240102856|ref|YP_002959165.1| - 3.6 8.0 10.9 11 6.4 10.9 1.8 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Peptidase_M42 PF05343.14 gi|240102857|ref|YP_002959166.1| - 1.3e-111 372.3 0.4 1.5e-111 372.1 0.4 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|240102857|ref|YP_002959166.1| - 5.8e-10 39.2 0.2 1.3e-09 38.1 0.1 1.5 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|240102857|ref|YP_002959166.1| - 6.4e-05 22.7 0.1 0.0022 17.7 0.0 2.2 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.15 gi|240102857|ref|YP_002959166.1| - 9.1e-05 21.4 0.0 0.003 16.4 0.0 2.0 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) SfsA PF03749.13 gi|240102859|ref|YP_002959168.1| - 8.9e-35 119.6 0.0 1.2e-34 119.2 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|240102859|ref|YP_002959168.1| - 3.9e-13 49.3 0.0 7.1e-13 48.5 0.0 1.5 1 0 0 1 1 1 1 SfsA N-terminal OB domain DNA_RNApol_7kD PF03604.13 gi|240102860|ref|YP_002959169.1| - 1.2e-09 37.7 4.7 1.2e-09 37.7 4.7 1.8 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|240102860|ref|YP_002959169.1| - 2.1e-05 24.6 0.7 4.7e-05 23.4 0.7 1.6 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|240102860|ref|YP_002959169.1| - 0.00021 21.3 0.3 0.00035 20.6 0.3 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|240102860|ref|YP_002959169.1| - 0.00093 18.8 3.4 0.037 13.7 3.4 2.4 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|240102860|ref|YP_002959169.1| - 0.0012 18.2 1.5 0.022 14.1 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|240102860|ref|YP_002959169.1| - 0.0041 17.4 0.3 1.4 9.2 0.0 2.3 2 0 0 2 2 2 1 LITAF-like zinc ribbon domain Sgf11 PF08209.11 gi|240102860|ref|YP_002959169.1| - 0.0077 15.8 1.5 1 9.0 0.1 2.5 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) Cys_rich_CPXG PF14255.6 gi|240102860|ref|YP_002959169.1| - 0.0077 16.1 0.5 1.3 9.0 0.2 2.2 2 0 0 2 2 2 1 Cysteine-rich CPXCG TF_Zn_Ribbon PF08271.12 gi|240102860|ref|YP_002959169.1| - 0.0081 15.7 2.4 0.027 14.0 2.4 1.9 1 1 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_9 PF14369.6 gi|240102860|ref|YP_002959169.1| - 0.0091 16.2 0.4 0.021 15.1 0.4 1.6 1 0 0 1 1 1 1 zinc-ribbon DZR PF12773.7 gi|240102860|ref|YP_002959169.1| - 0.01 15.8 2.1 0.016 15.3 1.5 1.8 1 1 0 1 1 1 0 Double zinc ribbon DUF1451 PF07295.11 gi|240102860|ref|YP_002959169.1| - 0.018 15.1 0.0 0.025 14.6 0.0 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-CHCC PF10276.9 gi|240102860|ref|YP_002959169.1| - 0.018 15.0 0.9 0.056 13.5 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger domain zf-RING_7 PF02591.15 gi|240102860|ref|YP_002959169.1| - 0.021 15.0 1.1 0.45 10.7 0.1 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|240102860|ref|YP_002959169.1| - 0.025 14.5 2.7 0.025 14.5 2.7 2.6 2 1 1 3 3 3 0 SprT-like zinc ribbon domain zf_UBZ PF18439.1 gi|240102860|ref|YP_002959169.1| - 0.033 13.8 0.8 1.4 8.5 0.0 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF951 PF06107.11 gi|240102860|ref|YP_002959169.1| - 0.034 14.1 2.2 4 7.4 0.0 3.0 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF951) OrfB_Zn_ribbon PF07282.11 gi|240102860|ref|YP_002959169.1| - 0.039 13.9 0.8 0.082 12.9 0.8 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF3268 PF11672.8 gi|240102860|ref|YP_002959169.1| - 0.04 14.2 1.2 1.5 9.2 0.1 2.2 1 1 1 2 2 2 0 zinc-finger-containing domain zinc_ribbon_10 PF10058.9 gi|240102860|ref|YP_002959169.1| - 0.069 12.9 0.8 3.9 7.3 0.2 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Desulfoferrod_N PF06397.12 gi|240102860|ref|YP_002959169.1| - 0.078 12.6 0.2 0.078 12.6 0.2 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain CpXC PF14353.6 gi|240102860|ref|YP_002959169.1| - 0.093 12.8 1.0 2.4 8.2 0.0 2.1 1 1 1 2 2 2 0 CpXC protein zinc-ribbons_6 PF07191.12 gi|240102860|ref|YP_002959169.1| - 0.11 12.5 2.6 0.29 11.2 2.7 1.8 1 1 0 1 1 1 0 zinc-ribbons RNHCP PF12647.7 gi|240102860|ref|YP_002959169.1| - 0.34 10.9 3.6 0.16 11.9 0.7 1.8 1 1 1 2 2 2 0 RNHCP domain Zn_Tnp_IS1595 PF12760.7 gi|240102860|ref|YP_002959169.1| - 0.43 10.6 0.3 0.43 10.6 0.3 2.7 2 1 0 2 2 2 0 Transposase zinc-ribbon domain PyrI_C PF02748.15 gi|240102860|ref|YP_002959169.1| - 0.47 10.4 3.4 2.3 8.2 0.2 2.3 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zinc_ribbon_4 PF13717.6 gi|240102860|ref|YP_002959169.1| - 4.2 7.4 10.0 5.3 7.0 4.2 3.0 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|240102860|ref|YP_002959169.1| - 9.1 6.1 9.2 11 5.9 0.7 2.5 3 0 0 3 3 2 0 zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|240102861|ref|YP_002959170.1| - 9.3e-34 115.4 4.8 9.9e-34 115.3 4.8 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|240102861|ref|YP_002959170.1| - 6.8e-08 32.4 2.4 9.4e-08 31.9 2.4 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|240102861|ref|YP_002959170.1| - 0.0004 20.3 0.8 0.00056 19.8 0.8 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|240102861|ref|YP_002959170.1| - 0.00045 20.3 1.9 0.054 13.6 0.4 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-RRN7 PF11781.8 gi|240102861|ref|YP_002959170.1| - 0.0012 18.5 0.9 0.002 17.8 0.9 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rep_fac-A_C PF08646.10 gi|240102861|ref|YP_002959170.1| - 0.0037 17.0 0.2 0.0042 16.8 0.2 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain ADK_lid PF05191.14 gi|240102861|ref|YP_002959170.1| - 0.0046 16.9 0.4 3.3 7.8 0.1 2.2 2 0 0 2 2 2 2 Adenylate kinase, active site lid zf-H2C2_2 PF13465.6 gi|240102861|ref|YP_002959170.1| - 0.0075 16.7 0.2 4.1 8.0 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Lar_restr_allev PF14354.6 gi|240102861|ref|YP_002959170.1| - 0.0087 16.4 0.4 0.012 15.9 0.4 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar C1_1 PF00130.22 gi|240102861|ref|YP_002959170.1| - 0.012 15.5 1.2 0.016 15.1 1.2 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TF_Zn_Ribbon PF08271.12 gi|240102861|ref|YP_002959170.1| - 0.017 14.6 0.1 0.025 14.1 0.1 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|240102861|ref|YP_002959170.1| - 0.022 14.8 1.9 0.044 13.8 1.9 1.5 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain RPA_interact_C PF14768.6 gi|240102861|ref|YP_002959170.1| - 0.024 15.2 0.1 0.031 14.8 0.1 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal A2L_zn_ribbon PF08792.10 gi|240102861|ref|YP_002959170.1| - 0.033 13.9 2.4 0.16 11.7 2.4 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain DUF4379 PF14311.6 gi|240102861|ref|YP_002959170.1| - 0.035 14.5 2.3 3.4 8.1 0.1 2.2 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zf-RING_13 PF17977.1 gi|240102861|ref|YP_002959170.1| - 0.036 14.2 2.8 0.047 13.8 2.8 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-BED PF02892.15 gi|240102861|ref|YP_002959170.1| - 0.038 14.0 1.7 2.6 8.1 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger zf-C2H2 PF00096.26 gi|240102861|ref|YP_002959170.1| - 0.055 13.9 0.8 8.6 7.0 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Nudix_N_2 PF14803.6 gi|240102861|ref|YP_002959170.1| - 0.064 13.2 2.1 1.2 9.1 0.1 2.5 2 1 0 2 2 2 0 Nudix N-terminal Rad50_zn_hook PF04423.14 gi|240102861|ref|YP_002959170.1| - 0.07 13.0 0.3 0.11 12.3 0.3 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif Zn_ribbon_SprT PF17283.2 gi|240102861|ref|YP_002959170.1| - 0.089 12.7 4.1 0.23 11.4 4.1 1.6 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-C2H2_4 PF13894.6 gi|240102861|ref|YP_002959170.1| - 0.09 13.7 1.0 16 6.7 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger NOB1_Zn_bind PF08772.11 gi|240102861|ref|YP_002959170.1| - 0.091 12.9 2.6 0.12 12.5 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2_6 PF13912.6 gi|240102861|ref|YP_002959170.1| - 0.11 12.5 2.5 7.1 6.8 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DZR PF12773.7 gi|240102861|ref|YP_002959170.1| - 0.12 12.4 2.1 1.3 9.1 2.5 1.8 1 1 1 2 2 2 0 Double zinc ribbon HalOD2 PF18547.1 gi|240102861|ref|YP_002959170.1| - 0.13 12.1 4.2 0.13 12.2 3.0 1.6 1 1 0 1 1 1 0 Halobacterial output domain 2 Elf1 PF05129.13 gi|240102861|ref|YP_002959170.1| - 0.13 12.3 1.7 0.24 11.4 1.7 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Rubredoxin_2 PF18073.1 gi|240102861|ref|YP_002959170.1| - 0.16 11.7 4.1 0.65 9.8 0.6 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2HC_2 PF13913.6 gi|240102861|ref|YP_002959170.1| - 0.2 11.6 4.7 2.8 7.9 0.6 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ogr_Delta PF04606.12 gi|240102861|ref|YP_002959170.1| - 0.28 11.2 3.4 2 8.5 0.2 2.2 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger zf-C2H2_11 PF16622.5 gi|240102861|ref|YP_002959170.1| - 0.69 9.7 0.2 0.69 9.7 0.2 2.0 2 0 0 2 2 2 0 zinc-finger C2H2-type Prim_Zn_Ribbon PF08273.12 gi|240102861|ref|YP_002959170.1| - 0.88 9.9 7.0 3.1 8.2 7.0 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.6 gi|240102861|ref|YP_002959170.1| - 0.89 9.4 4.8 11 5.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.6 gi|240102861|ref|YP_002959170.1| - 1 9.1 5.7 0.53 9.9 0.5 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ACC PF17848.1 gi|240102861|ref|YP_002959170.1| - 1.3 9.1 6.7 12 6.1 1.7 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain ThiS PF02597.20 gi|240102862|ref|YP_002959171.1| - 5.5e-11 43.0 0.5 6.1e-11 42.8 0.5 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|240102862|ref|YP_002959171.1| - 0.0038 17.0 0.3 0.004 17.0 0.3 1.1 1 0 0 1 1 1 1 Mut7-C ubiquitin TGS PF02824.21 gi|240102862|ref|YP_002959171.1| - 0.0049 16.9 0.2 0.0058 16.6 0.2 1.4 1 1 0 1 1 1 1 TGS domain DUF2070 PF09843.9 gi|240102863|ref|YP_002959172.1| - 0.033 12.5 1.1 0.035 12.4 1.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Peptidase_M56 PF05569.11 gi|240102863|ref|YP_002959172.1| - 0.088 12.0 0.1 0.17 11.1 0.0 1.5 1 1 0 1 1 1 0 BlaR1 peptidase M56 Prominin PF05478.11 gi|240102863|ref|YP_002959172.1| - 0.16 9.9 0.1 0.2 9.6 0.1 1.1 1 0 0 1 1 1 0 Prominin PRA1 PF03208.19 gi|240102863|ref|YP_002959172.1| - 0.69 9.5 5.4 1 9.0 5.4 1.2 1 0 0 1 1 1 0 PRA1 family protein DUF5316 PF17247.2 gi|240102863|ref|YP_002959172.1| - 1.8 8.6 7.5 0.083 12.9 1.7 1.8 2 1 0 2 2 2 0 Family of unknown function (DUF5316) DUF4731 PF15875.5 gi|240102863|ref|YP_002959172.1| - 6.6 7.0 7.5 5 7.4 0.3 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4731) Lys_export PF03956.13 gi|240102864|ref|YP_002959173.1| - 2.4e-58 196.8 13.5 2.9e-58 196.5 13.5 1.0 1 0 0 1 1 1 1 Lysine exporter LysO DAPDH_C PF16654.5 gi|240102865|ref|YP_002959174.1| - 0.048 13.5 0.8 0.057 13.3 0.8 1.0 1 0 0 1 1 1 0 Diaminopimelic acid dehydrogenase C-terminal domain P66_CC PF16563.5 gi|240102865|ref|YP_002959174.1| - 0.22 11.1 12.2 0.12 12.0 2.6 2.4 1 1 1 2 2 2 0 Coiled-coil and interaction region of P66A and P66B with MBD2 EIF_2_alpha PF07541.12 gi|240102866|ref|YP_002959175.1| - 1.2e-23 83.4 0.4 3.2e-23 82.0 0.0 1.9 2 1 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|240102866|ref|YP_002959175.1| - 7.8e-14 51.8 0.2 1.6e-13 50.7 0.2 1.6 1 0 0 1 1 1 1 S1 RNA binding domain Nop10p PF04135.12 gi|240102867|ref|YP_002959176.1| - 1.3e-27 95.6 2.9 1.4e-27 95.4 2.9 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|240102867|ref|YP_002959176.1| - 3.8e-05 23.1 0.9 4.9e-05 22.8 0.9 1.2 1 0 0 1 1 1 1 RecR protein zf-NADH-PPase PF09297.11 gi|240102867|ref|YP_002959176.1| - 0.00014 21.4 2.8 0.044 13.5 0.1 2.3 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain PolC_DP2 PF03833.13 gi|240102867|ref|YP_002959176.1| - 0.00031 18.8 0.1 0.00031 18.8 0.1 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 DUF35_N PF12172.8 gi|240102867|ref|YP_002959176.1| - 0.00044 20.1 1.9 0.00044 20.1 1.9 1.9 1 1 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Prim_Zn_Ribbon PF08273.12 gi|240102867|ref|YP_002959176.1| - 0.00049 20.3 0.7 0.41 11.0 0.1 2.5 2 0 0 2 2 2 2 Zinc-binding domain of primase-helicase zf-nanos PF05741.13 gi|240102867|ref|YP_002959176.1| - 0.0076 16.5 1.7 0.049 13.9 1.7 2.0 1 1 0 1 1 1 1 Nanos RNA binding domain zf-FPG_IleRS PF06827.14 gi|240102867|ref|YP_002959176.1| - 0.017 15.0 4.4 0.22 11.4 0.5 2.3 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS NRDD PF13597.6 gi|240102867|ref|YP_002959176.1| - 0.02 13.7 0.6 0.02 13.7 0.6 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DNA_ligase_ZBD PF03119.16 gi|240102867|ref|YP_002959176.1| - 0.02 14.9 3.0 0.76 9.9 0.5 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|240102867|ref|YP_002959176.1| - 0.03 13.8 6.1 2.2 7.9 6.3 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding zf-tcix PF14952.6 gi|240102867|ref|YP_002959176.1| - 0.034 13.8 2.1 0.034 13.8 2.1 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF1272 PF06906.11 gi|240102867|ref|YP_002959176.1| - 0.037 14.1 1.0 0.054 13.6 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DZR PF12773.7 gi|240102867|ref|YP_002959176.1| - 0.048 13.7 2.5 0.099 12.7 2.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|240102867|ref|YP_002959176.1| - 0.052 13.3 7.1 1.5 8.7 1.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|240102867|ref|YP_002959176.1| - 0.059 14.0 8.9 1.5 9.6 2.1 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.6 gi|240102867|ref|YP_002959176.1| - 0.067 12.6 8.7 1.1 8.7 0.6 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|240102867|ref|YP_002959176.1| - 0.087 12.5 5.4 0.22 11.2 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|240102867|ref|YP_002959176.1| - 0.093 12.9 4.8 5.6 7.2 4.8 2.2 1 1 0 1 1 1 0 Zinc ribbon domain CpXC PF14353.6 gi|240102867|ref|YP_002959176.1| - 0.16 12.0 2.3 2 8.5 0.1 2.1 1 1 1 2 2 2 0 CpXC protein Cys_rich_KTR PF14205.6 gi|240102867|ref|YP_002959176.1| - 0.2 11.5 4.3 0.34 10.8 0.5 2.2 1 1 1 2 2 2 0 Cysteine-rich KTR zf-IS66 PF13005.7 gi|240102867|ref|YP_002959176.1| - 0.24 11.8 5.7 2.2 8.7 0.2 2.6 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.6 gi|240102867|ref|YP_002959176.1| - 0.28 10.5 3.3 2.7 7.4 0.2 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger Cys_rich_CPCC PF14206.6 gi|240102867|ref|YP_002959176.1| - 0.32 10.8 3.2 0.84 9.5 3.2 1.7 1 1 1 2 2 2 0 Cysteine-rich CPCC OrfB_Zn_ribbon PF07282.11 gi|240102867|ref|YP_002959176.1| - 0.57 10.1 3.2 4 7.4 0.1 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Ogr_Delta PF04606.12 gi|240102867|ref|YP_002959176.1| - 1.4 8.9 5.9 4.3 7.4 0.5 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_7 PF02591.15 gi|240102867|ref|YP_002959176.1| - 1.7 8.9 5.8 0.77 10.0 1.4 2.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain Ribosomal_L32p PF01783.23 gi|240102867|ref|YP_002959176.1| - 2.7 8.3 6.9 0.47 10.7 1.6 2.1 2 1 0 2 2 1 0 Ribosomal L32p protein family Zn_Tnp_IS1595 PF12760.7 gi|240102867|ref|YP_002959176.1| - 3.5 7.7 9.1 6.7 6.8 0.9 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1610 PF07754.11 gi|240102867|ref|YP_002959176.1| - 3.5 7.7 8.6 2.9 7.9 2.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn-C2H2_12 PF18112.1 gi|240102867|ref|YP_002959176.1| - 4 8.0 5.4 14 6.3 0.5 2.3 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain PAC2 PF09754.9 gi|240102868|ref|YP_002959177.1| - 6.6e-50 170.1 0.1 7.7e-50 169.9 0.1 1.0 1 0 0 1 1 1 1 PAC2 family IU_nuc_hydro PF01156.19 gi|240102868|ref|YP_002959177.1| - 0.1 12.1 0.1 0.24 10.9 0.1 1.5 2 0 0 2 2 2 0 Inosine-uridine preferring nucleoside hydrolase TPR_14 PF13428.6 gi|240102869|ref|YP_002959178.1| - 0.0011 19.6 0.0 31 5.7 0.0 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat PGM_PMM_I PF02878.16 gi|240102870|ref|YP_002959179.1| - 3e-47 159.8 0.0 6e-47 158.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|240102870|ref|YP_002959179.1| - 1.3e-30 106.1 0.0 3.1e-30 104.8 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|240102870|ref|YP_002959179.1| - 6.4e-27 94.0 0.0 1.1e-26 93.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|240102870|ref|YP_002959179.1| - 1.7e-13 50.6 1.1 6.6e-13 48.6 0.2 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP_endonuc_2 PF01261.24 gi|240102870|ref|YP_002959179.1| - 0.04 13.4 0.0 0.13 11.7 0.0 2.0 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Nif11 PF07862.11 gi|240102870|ref|YP_002959179.1| - 0.12 12.7 0.1 1 9.7 0.0 2.4 2 0 0 2 2 2 0 Nif11 domain MannoseP_isomer PF01050.18 gi|240102872|ref|YP_002959181.1| - 9.2e-66 220.4 0.3 1.6e-65 219.6 0.3 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|240102872|ref|YP_002959181.1| - 9.4e-58 195.7 0.0 1.4e-57 195.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|240102872|ref|YP_002959181.1| - 8.2e-13 47.9 0.2 2.9e-12 46.1 0.1 2.0 2 0 0 2 2 2 1 Cupin domain NTP_transf_3 PF12804.7 gi|240102872|ref|YP_002959181.1| - 1.5e-08 35.2 0.0 6.1e-08 33.2 0.0 1.9 2 0 0 2 2 2 1 MobA-like NTP transferase domain Cupin_6 PF12852.7 gi|240102872|ref|YP_002959181.1| - 0.00079 19.2 0.1 0.0031 17.2 0.0 2.0 2 1 1 3 3 3 1 Cupin Cupin_3 PF05899.12 gi|240102872|ref|YP_002959181.1| - 0.0015 18.1 0.0 0.0043 16.7 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|240102872|ref|YP_002959181.1| - 0.008 16.1 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain IspD PF01128.19 gi|240102872|ref|YP_002959181.1| - 0.025 14.3 0.0 2.4 7.8 0.0 2.3 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hydrolase_3 PF08282.12 gi|240102873|ref|YP_002959182.1| - 1.8e-17 63.9 0.0 1.4e-09 38.1 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|240102873|ref|YP_002959182.1| - 9.8e-05 22.8 2.4 0.76 10.2 0.0 3.5 1 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|240102873|ref|YP_002959182.1| - 0.0015 18.6 0.0 0.15 12.2 0.0 2.6 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|240102873|ref|YP_002959182.1| - 0.002 17.7 0.0 0.068 12.7 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|240102873|ref|YP_002959182.1| - 0.081 13.2 0.3 19 5.4 0.2 3.3 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|240102873|ref|YP_002959182.1| - 0.083 13.0 0.6 2.7 8.0 0.0 3.0 2 2 2 4 4 4 0 Haloacid dehalogenase-like hydrolase Osmo_MPGsynth PF09488.10 gi|240102874|ref|YP_002959183.1| - 2.5e-151 503.8 0.0 2.8e-151 503.7 0.0 1.0 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) ADP_PFK_GK PF04587.15 gi|240102875|ref|YP_002959184.1| - 1.2e-91 307.4 0.0 1.4e-91 307.3 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ABC_tran PF00005.27 gi|240102876|ref|YP_002959185.1| - 3.6e-28 98.8 0.0 5.2e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240102876|ref|YP_002959185.1| - 1.6e-11 44.5 0.0 1.1e-05 25.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|240102876|ref|YP_002959185.1| - 3.4e-05 24.4 0.0 7e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|240102876|ref|YP_002959185.1| - 6.3e-05 22.5 0.0 0.02 14.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|240102876|ref|YP_002959185.1| - 0.00014 22.3 0.1 0.00023 21.6 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|240102876|ref|YP_002959185.1| - 0.00047 19.9 0.0 0.00083 19.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|240102876|ref|YP_002959185.1| - 0.00089 19.1 0.0 0.36 10.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|240102876|ref|YP_002959185.1| - 0.0026 18.0 0.7 0.035 14.4 0.7 2.0 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|240102876|ref|YP_002959185.1| - 0.0036 17.2 0.2 1.2 9.0 0.0 2.6 2 1 1 3 3 3 1 NTPase AAA_27 PF13514.6 gi|240102876|ref|YP_002959185.1| - 0.0047 16.5 0.0 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|240102876|ref|YP_002959185.1| - 0.0052 16.7 0.0 0.016 15.1 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|240102876|ref|YP_002959185.1| - 0.0091 15.7 0.0 0.022 14.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|240102876|ref|YP_002959185.1| - 0.021 15.4 0.1 0.24 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|240102876|ref|YP_002959185.1| - 0.029 14.6 0.0 0.081 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|240102876|ref|YP_002959185.1| - 0.035 13.1 0.0 0.055 12.5 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|240102876|ref|YP_002959185.1| - 0.042 13.8 0.0 0.09 12.7 0.0 1.6 2 0 0 2 2 2 0 NACHT domain ABC_ATPase PF09818.9 gi|240102876|ref|YP_002959185.1| - 0.052 12.3 0.4 2.3 6.9 0.1 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 gi|240102876|ref|YP_002959185.1| - 0.061 13.4 0.1 0.09 12.9 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|240102876|ref|YP_002959185.1| - 0.068 13.2 0.0 2.6 8.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|240102876|ref|YP_002959185.1| - 0.068 12.7 0.0 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|240102876|ref|YP_002959185.1| - 0.069 12.9 0.0 0.78 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|240102876|ref|YP_002959185.1| - 0.081 12.8 0.1 0.21 11.5 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|240102876|ref|YP_002959185.1| - 0.092 12.6 0.0 0.2 11.5 0.0 1.8 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea SNAPc19 PF15497.6 gi|240102876|ref|YP_002959185.1| - 0.1 13.0 1.0 0.17 12.3 1.0 1.3 1 0 0 1 1 1 0 snRNA-activating protein complex subunit 19, SNAPc subunit 19 AAA PF00004.29 gi|240102876|ref|YP_002959185.1| - 0.12 12.8 0.0 1 9.8 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|240102876|ref|YP_002959185.1| - 0.16 12.1 0.0 0.32 11.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|240102876|ref|YP_002959185.1| - 0.18 11.5 0.0 0.43 10.3 0.0 1.6 2 0 0 2 2 2 0 Cytidylate kinase NB-ARC PF00931.22 gi|240102876|ref|YP_002959185.1| - 0.21 10.8 0.3 2.1 7.5 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain FecCD PF01032.18 gi|240102877|ref|YP_002959186.1| - 4.5e-93 311.7 34.0 5.5e-93 311.4 34.0 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|240102877|ref|YP_002959186.1| - 1.2e-06 28.2 19.7 2.2e-06 27.4 19.7 1.4 1 0 0 1 1 1 1 ABC 3 transport family Peripla_BP_2 PF01497.18 gi|240102878|ref|YP_002959187.1| - 7.8e-25 87.8 0.0 1.1e-24 87.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein CbiA PF01656.23 gi|240102879|ref|YP_002959188.1| - 1.8e-20 73.3 0.0 3.1e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|240102879|ref|YP_002959188.1| - 3.9e-13 49.7 0.0 7.8e-13 48.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|240102879|ref|YP_002959188.1| - 1.2e-10 41.1 0.1 4.4e-10 39.2 0.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.9 gi|240102879|ref|YP_002959188.1| - 5.6e-09 35.8 0.1 7e-07 28.9 0.0 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|240102879|ref|YP_002959188.1| - 1.6e-07 31.0 0.0 0.00012 21.7 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|240102879|ref|YP_002959188.1| - 1.2e-05 24.9 0.0 0.00026 20.5 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_16 PF13191.6 gi|240102879|ref|YP_002959188.1| - 0.00033 21.1 0.0 0.00065 20.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|240102879|ref|YP_002959188.1| - 0.00045 20.7 0.0 0.0016 19.0 0.0 2.0 1 1 0 1 1 1 1 ABC transporter NTPase_1 PF03266.15 gi|240102879|ref|YP_002959188.1| - 0.00053 19.9 0.1 0.0014 18.5 0.1 1.7 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|240102879|ref|YP_002959188.1| - 0.00074 19.3 0.0 0.0016 18.2 0.0 1.6 2 0 0 2 2 1 1 AAA domain SRP54 PF00448.22 gi|240102879|ref|YP_002959188.1| - 0.00087 19.0 0.3 0.011 15.4 0.1 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|240102879|ref|YP_002959188.1| - 0.00088 18.3 0.0 0.0015 17.6 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|240102879|ref|YP_002959188.1| - 0.0012 19.4 0.0 0.011 16.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|240102879|ref|YP_002959188.1| - 0.0015 18.4 0.0 0.003 17.5 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase TsaE PF02367.17 gi|240102879|ref|YP_002959188.1| - 0.0059 16.6 0.6 0.3 11.1 0.1 2.4 2 1 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF853 PF05872.12 gi|240102879|ref|YP_002959188.1| - 0.0087 14.7 0.0 0.012 14.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) CLP1_P PF16575.5 gi|240102879|ref|YP_002959188.1| - 0.013 15.3 0.0 0.036 13.8 0.0 1.7 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop IstB_IS21 PF01695.17 gi|240102879|ref|YP_002959188.1| - 0.016 15.0 0.5 0.11 12.2 0.1 2.3 2 1 0 3 3 3 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|240102879|ref|YP_002959188.1| - 0.016 15.5 0.0 0.045 14.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|240102879|ref|YP_002959188.1| - 0.019 14.6 0.0 0.049 13.3 0.0 1.7 1 0 0 1 1 1 0 Thymidylate kinase AAA_24 PF13479.6 gi|240102879|ref|YP_002959188.1| - 0.029 14.1 0.0 0.066 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain LpxK PF02606.14 gi|240102879|ref|YP_002959188.1| - 0.03 13.4 0.0 0.045 12.8 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_25 PF13481.6 gi|240102879|ref|YP_002959188.1| - 0.033 13.8 0.0 0.064 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|240102879|ref|YP_002959188.1| - 0.034 14.0 0.0 0.072 13.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KAP_NTPase PF07693.14 gi|240102879|ref|YP_002959188.1| - 0.036 13.3 0.0 0.045 13.0 0.0 1.4 1 0 0 1 1 1 0 KAP family P-loop domain PGM_PMM_II PF02879.16 gi|240102879|ref|YP_002959188.1| - 0.038 14.6 0.6 0.28 11.8 0.0 2.6 3 0 0 3 3 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II cobW PF02492.19 gi|240102879|ref|YP_002959188.1| - 0.041 13.5 0.1 4.2 6.9 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MipZ PF09140.11 gi|240102879|ref|YP_002959188.1| - 0.043 13.1 0.0 0.075 12.3 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ POR PF01558.18 gi|240102879|ref|YP_002959188.1| - 0.056 13.5 0.0 5.9 6.9 0.0 2.4 2 0 0 2 2 2 0 Pyruvate ferredoxin/flavodoxin oxidoreductase AAA_26 PF13500.6 gi|240102879|ref|YP_002959188.1| - 0.06 13.2 1.3 2.1 8.1 0.2 2.3 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|240102879|ref|YP_002959188.1| - 0.072 13.0 0.0 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase T2SSE PF00437.20 gi|240102879|ref|YP_002959188.1| - 0.077 12.0 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|240102879|ref|YP_002959188.1| - 0.091 12.8 0.0 0.23 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|240102879|ref|YP_002959188.1| - 0.1 12.5 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain KTI12 PF08433.10 gi|240102879|ref|YP_002959188.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|240102879|ref|YP_002959188.1| - 0.14 11.3 0.0 0.25 10.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain ATP_bind_1 PF03029.17 gi|240102879|ref|YP_002959188.1| - 0.15 11.8 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DAP3 PF10236.9 gi|240102879|ref|YP_002959188.1| - 0.16 11.1 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ResIII PF04851.15 gi|240102879|ref|YP_002959188.1| - 0.18 11.8 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AP_endonuc_2 PF01261.24 gi|240102879|ref|YP_002959188.1| - 0.18 11.2 0.0 0.43 10.0 0.0 1.6 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel AAA_29 PF13555.6 gi|240102879|ref|YP_002959188.1| - 0.21 11.4 0.0 0.59 9.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Fer4_11 PF13247.6 gi|240102880|ref|YP_002959189.1| - 5.3e-28 97.1 10.5 5.3e-28 97.1 10.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|240102880|ref|YP_002959189.1| - 1.6e-13 50.1 37.9 5e-06 26.3 2.9 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|240102880|ref|YP_002959189.1| - 1.1e-12 47.2 39.2 2.5e-07 30.2 3.8 5.2 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102880|ref|YP_002959189.1| - 1.4e-12 48.0 30.0 2.2e-06 28.2 12.7 3.9 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240102880|ref|YP_002959189.1| - 2.8e-10 40.2 23.9 8.1e-05 22.7 11.6 3.0 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102880|ref|YP_002959189.1| - 3.8e-10 39.7 29.0 3.8e-05 23.7 10.2 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|240102880|ref|YP_002959189.1| - 1.3e-08 34.9 22.1 1.7e-05 24.8 9.6 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102880|ref|YP_002959189.1| - 1.8e-08 34.0 34.1 0.00023 21.1 1.8 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|240102880|ref|YP_002959189.1| - 1.6e-06 29.0 26.7 0.056 14.4 1.9 4.9 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|240102880|ref|YP_002959189.1| - 1.8e-05 25.3 41.7 0.025 15.5 6.1 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240102880|ref|YP_002959189.1| - 0.0033 17.9 26.6 0.072 13.7 2.1 4.2 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240102880|ref|YP_002959189.1| - 0.0055 17.1 3.2 0.0055 17.1 3.2 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|240102880|ref|YP_002959189.1| - 0.043 14.2 28.1 0.15 12.5 2.5 3.8 1 1 1 3 3 3 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|240102880|ref|YP_002959189.1| - 0.05 13.7 11.0 1 9.5 0.4 2.6 2 1 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|240102880|ref|YP_002959189.1| - 0.064 14.0 12.4 0.098 13.4 0.7 3.7 4 0 0 4 4 4 0 4Fe-4S single cluster domain Pectinesterase PF01095.19 gi|240102880|ref|YP_002959189.1| - 0.12 11.1 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Pectinesterase Fer4_18 PF13746.6 gi|240102880|ref|YP_002959189.1| - 0.56 10.4 23.5 0.035 14.3 6.2 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Prismane PF03063.20 gi|240102881|ref|YP_002959190.1| - 6.5e-162 539.8 0.2 8.4e-162 539.4 0.2 1.1 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Rho_N PF07498.12 gi|240102881|ref|YP_002959190.1| - 0.0097 15.8 0.6 29 4.7 0.1 4.5 4 0 0 4 4 4 1 Rho termination factor, N-terminal domain Fer4_16 PF13484.6 gi|240102882|ref|YP_002959191.1| - 2.6e-10 41.1 13.3 0.00013 22.8 0.9 2.5 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|240102882|ref|YP_002959191.1| - 3.8e-09 37.0 9.5 3.8e-09 37.0 9.5 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|240102882|ref|YP_002959191.1| - 6e-09 35.4 2.7 6e-09 35.4 2.7 4.1 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|240102882|ref|YP_002959191.1| - 1.2e-08 35.0 20.9 3e-05 24.1 11.9 2.8 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|240102882|ref|YP_002959191.1| - 8.6e-08 32.2 8.2 8.6e-08 32.2 8.2 2.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|240102882|ref|YP_002959191.1| - 1.5e-07 31.2 14.0 3.7e-05 23.6 4.4 3.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|240102882|ref|YP_002959191.1| - 3.4e-06 27.1 17.9 0.0012 18.9 1.8 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102882|ref|YP_002959191.1| - 5.1e-05 23.1 19.2 7.7e-05 22.6 2.3 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240102882|ref|YP_002959191.1| - 0.00037 21.0 0.4 0.00037 21.0 0.4 3.0 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|240102882|ref|YP_002959191.1| - 0.0022 18.8 6.7 0.0022 18.8 6.7 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|240102882|ref|YP_002959191.1| - 0.0059 17.0 2.3 0.0059 17.0 2.3 2.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240102882|ref|YP_002959191.1| - 0.01 16.3 1.0 0.01 16.3 1.0 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|240102882|ref|YP_002959191.1| - 0.021 15.3 8.6 0.021 15.3 8.6 2.2 2 1 0 2 2 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|240102882|ref|YP_002959191.1| - 0.046 14.6 1.0 0.046 14.6 1.0 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain SCIFF PF13165.6 gi|240102882|ref|YP_002959191.1| - 0.15 12.0 0.1 0.15 12.0 0.1 2.8 3 0 0 3 3 2 0 Six-cysteine peptide SCIFF Fer4_15 PF13459.6 gi|240102882|ref|YP_002959191.1| - 1 10.2 10.7 0.67 10.7 6.8 2.5 2 1 0 2 2 1 0 4Fe-4S single cluster domain Stig1 PF04885.13 gi|240102882|ref|YP_002959191.1| - 1.1 9.7 10.9 6.7 7.2 8.7 2.3 2 0 0 2 2 2 0 Stigma-specific protein, Stig1 Fer4_18 PF13746.6 gi|240102882|ref|YP_002959191.1| - 1.3 9.2 10.1 7.5 6.8 8.2 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-trcl PF13451.6 gi|240102882|ref|YP_002959191.1| - 1.5 8.8 6.7 0.69 9.8 1.7 2.7 2 1 0 2 2 2 0 Probable zinc-ribbon domain Pyr_redox_2 PF07992.14 gi|240102883|ref|YP_002959192.1| - 1e-36 126.7 0.0 1.3e-36 126.4 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|240102883|ref|YP_002959192.1| - 7.6e-12 45.1 0.0 2.5e-07 30.3 0.0 3.3 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|240102883|ref|YP_002959192.1| - 5.3e-10 39.4 0.0 2.1e-07 31.1 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|240102883|ref|YP_002959192.1| - 4.6e-09 36.7 0.3 0.0008 19.9 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|240102883|ref|YP_002959192.1| - 4.3e-06 26.2 0.0 0.038 13.3 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|240102883|ref|YP_002959192.1| - 6.8e-06 25.5 0.1 0.017 14.5 0.0 2.6 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|240102883|ref|YP_002959192.1| - 2.3e-05 23.3 1.6 5.1e-05 22.2 0.1 2.2 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|240102883|ref|YP_002959192.1| - 3.9e-05 22.9 0.4 0.023 13.8 0.0 2.7 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|240102883|ref|YP_002959192.1| - 0.00017 21.3 0.6 0.021 14.4 0.1 2.8 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|240102883|ref|YP_002959192.1| - 0.00029 20.0 0.7 0.65 9.0 0.1 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|240102883|ref|YP_002959192.1| - 0.00046 19.5 0.3 0.0012 18.2 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain Shikimate_DH PF01488.20 gi|240102883|ref|YP_002959192.1| - 0.00048 20.2 0.0 0.94 9.5 0.0 2.8 3 0 0 3 3 3 2 Shikimate / quinate 5-dehydrogenase FMO-like PF00743.19 gi|240102883|ref|YP_002959192.1| - 0.00058 18.4 0.0 0.075 11.4 0.0 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like Thi4 PF01946.17 gi|240102883|ref|YP_002959192.1| - 0.0012 18.1 0.0 0.0021 17.4 0.0 1.3 1 0 0 1 1 1 1 Thi4 family 3HCDH_N PF02737.18 gi|240102883|ref|YP_002959192.1| - 0.0012 18.7 0.3 0.3 11.0 0.1 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|240102883|ref|YP_002959192.1| - 0.017 15.1 0.6 0.29 11.1 0.1 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 gi|240102883|ref|YP_002959192.1| - 0.017 15.5 0.1 1.3 9.5 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding K_oxygenase PF13434.6 gi|240102883|ref|YP_002959192.1| - 0.028 13.6 0.0 1.2 8.2 0.0 2.6 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) MCRA PF06100.11 gi|240102883|ref|YP_002959192.1| - 0.052 12.3 0.0 0.072 11.9 0.0 1.1 1 0 0 1 1 1 0 MCRA family Amino_oxidase PF01593.24 gi|240102883|ref|YP_002959192.1| - 0.065 12.5 0.0 0.95 8.7 0.0 2.4 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase F420_oxidored PF03807.17 gi|240102883|ref|YP_002959192.1| - 0.16 12.6 0.0 33 5.1 0.0 3.2 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent FAD_oxidored PF12831.7 gi|240102883|ref|YP_002959192.1| - 0.2 10.9 0.3 0.55 9.5 0.0 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase Fer4_11 PF13247.6 gi|240102884|ref|YP_002959193.1| - 7.8e-26 90.1 11.0 7.8e-26 90.1 11.0 1.4 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|240102884|ref|YP_002959193.1| - 4.9e-12 46.2 27.6 5.1e-08 33.4 10.2 3.8 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|240102884|ref|YP_002959193.1| - 3.6e-11 42.4 37.7 1.3e-07 31.1 2.3 5.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|240102884|ref|YP_002959193.1| - 5.2e-11 42.5 46.7 9.9e-06 25.6 10.7 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240102884|ref|YP_002959193.1| - 1.5e-09 37.4 30.5 3.4e-05 23.7 1.5 4.3 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|240102884|ref|YP_002959193.1| - 5e-09 36.1 28.0 8.3e-05 22.6 11.9 3.4 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|240102884|ref|YP_002959193.1| - 1e-08 34.8 39.5 1.2e-05 25.2 2.4 4.9 4 1 0 4 4 3 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|240102884|ref|YP_002959193.1| - 2e-07 31.8 27.7 0.032 15.2 1.3 5.1 3 1 2 5 5 5 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|240102884|ref|YP_002959193.1| - 5.4e-07 30.1 40.5 0.0087 16.9 4.9 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240102884|ref|YP_002959193.1| - 2.5e-05 24.3 30.9 0.00013 22.0 11.9 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|240102884|ref|YP_002959193.1| - 0.0018 18.7 27.6 0.44 11.1 0.5 4.3 3 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240102884|ref|YP_002959193.1| - 0.13 12.9 2.2 0.13 12.9 2.2 4.5 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|240102884|ref|YP_002959193.1| - 0.24 11.6 26.4 0.069 13.4 3.3 3.9 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|240102884|ref|YP_002959193.1| - 0.33 11.4 30.1 3.1 8.3 20.9 4.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|240102884|ref|YP_002959193.1| - 0.33 11.5 30.3 0.42 11.2 2.8 4.3 2 2 3 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|240102884|ref|YP_002959193.1| - 0.54 11.0 24.2 6.7 7.5 5.9 3.8 2 2 0 2 2 2 0 4Fe-4S single cluster domain TBP PF00352.21 gi|240102886|ref|YP_002959195.1| - 5.7e-53 176.8 0.1 1.2e-25 89.3 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|240102886|ref|YP_002959195.1| - 4.9e-09 36.2 0.0 3.6e-05 23.8 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF3378) DNA_pol_lambd_f PF10391.9 gi|240102886|ref|YP_002959195.1| - 0.011 15.5 0.0 0.66 9.9 0.0 2.3 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda PCB_OB PF17092.5 gi|240102886|ref|YP_002959195.1| - 0.039 14.7 0.0 13 6.6 0.0 2.2 2 0 0 2 2 2 0 Penicillin-binding protein OB-like domain DUF2703 PF10865.8 gi|240102886|ref|YP_002959195.1| - 0.17 12.1 0.0 8.9 6.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2703) Cation_efflux PF01545.21 gi|240102887|ref|YP_002959196.1| - 3.6e-45 154.2 14.1 4.2e-45 153.9 14.1 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|240102887|ref|YP_002959196.1| - 8.9e-10 38.6 0.9 8.9e-10 38.6 0.9 1.7 2 0 0 2 2 2 1 Dimerisation domain of Zinc Transporter PetG PF02529.15 gi|240102887|ref|YP_002959196.1| - 0.079 12.8 0.9 2 8.3 0.0 2.6 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 CD20 PF04103.15 gi|240102887|ref|YP_002959196.1| - 0.19 11.8 0.0 0.19 11.8 0.0 2.6 2 1 1 3 3 3 0 CD20-like family MARVEL PF01284.23 gi|240102887|ref|YP_002959196.1| - 0.4 10.7 3.9 0.92 9.5 3.9 1.7 1 1 0 1 1 1 0 Membrane-associating domain ABC2_membrane_3 PF12698.7 gi|240102888|ref|YP_002959197.1| - 4.8e-09 35.8 12.0 4.8e-09 35.8 12.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|240102888|ref|YP_002959197.1| - 1.2e-05 25.4 13.1 3.2e-05 24.0 13.0 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|240102888|ref|YP_002959197.1| - 0.0055 16.0 16.1 0.022 14.0 15.1 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein Tmemb_170 PF10190.9 gi|240102888|ref|YP_002959197.1| - 0.011 16.1 0.3 0.011 16.1 0.3 2.5 2 0 0 2 2 2 0 Putative transmembrane protein 170 DUF3290 PF11694.8 gi|240102888|ref|YP_002959197.1| - 0.035 14.1 0.2 0.035 14.1 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) VIT1 PF01988.19 gi|240102888|ref|YP_002959197.1| - 1.4 8.8 6.5 1.1 9.1 1.4 2.4 1 1 1 2 2 2 0 VIT family ABC2_membrane_3 PF12698.7 gi|240102889|ref|YP_002959198.1| - 1.9e-05 23.9 16.5 6.7e-05 22.2 16.5 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|240102889|ref|YP_002959198.1| - 0.0012 18.3 10.7 0.0012 18.3 10.7 1.9 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|240102889|ref|YP_002959198.1| - 0.0035 17.3 6.9 0.0076 16.2 6.8 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|240102889|ref|YP_002959198.1| - 0.05 13.2 10.4 0.14 11.7 10.3 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2721 PF11026.8 gi|240102889|ref|YP_002959198.1| - 0.71 9.8 5.8 0.26 11.2 1.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) ABC_tran PF00005.27 gi|240102890|ref|YP_002959199.1| - 3.5e-29 102.1 0.0 5.9e-29 101.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240102890|ref|YP_002959199.1| - 2.4e-14 53.9 0.4 3.9e-10 40.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|240102890|ref|YP_002959199.1| - 0.00017 22.2 0.9 0.00071 20.2 0.9 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|240102890|ref|YP_002959199.1| - 0.00019 21.3 0.0 0.28 10.9 0.1 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|240102890|ref|YP_002959199.1| - 0.00026 21.4 0.1 0.0016 18.9 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|240102890|ref|YP_002959199.1| - 0.0082 16.7 0.1 0.02 15.4 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|240102890|ref|YP_002959199.1| - 0.011 15.4 0.1 0.028 14.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|240102890|ref|YP_002959199.1| - 0.031 13.9 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|240102890|ref|YP_002959199.1| - 0.036 14.0 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|240102890|ref|YP_002959199.1| - 0.1 12.5 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase MobB PF03205.14 gi|240102890|ref|YP_002959199.1| - 0.12 12.2 0.3 1.4 8.9 0.2 2.5 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 gi|240102890|ref|YP_002959199.1| - 0.14 11.4 0.0 0.55 9.5 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin T2SSE PF00437.20 gi|240102890|ref|YP_002959199.1| - 0.17 10.9 0.0 0.7 8.9 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein HTH_10 PF04967.12 gi|240102891|ref|YP_002959200.1| - 1.2e-09 37.8 0.0 1.9e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain OsmC PF02566.19 gi|240102892|ref|YP_002959201.1| - 1.7e-18 66.9 0.0 2.7e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 OsmC-like protein DUF3574 PF12098.8 gi|240102892|ref|YP_002959201.1| - 0.04 13.7 0.0 0.059 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3574) MecA_N PF05223.11 gi|240102892|ref|YP_002959201.1| - 0.069 13.4 0.1 0.19 12.0 0.1 1.8 2 1 0 2 2 2 0 NTF2-like N-terminal transpeptidase domain ABC2_membrane PF01061.24 gi|240102893|ref|YP_002959202.1| - 1.1e-19 70.7 18.7 1.1e-19 70.7 18.7 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|240102893|ref|YP_002959202.1| - 9.5e-12 44.7 21.1 9.5e-12 44.7 21.1 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|240102893|ref|YP_002959202.1| - 8.4e-05 22.0 16.1 8.4e-05 22.0 16.1 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|240102894|ref|YP_002959203.1| - 3.1e-29 102.2 0.0 5.7e-29 101.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240102894|ref|YP_002959203.1| - 1.1e-13 51.7 0.2 4.6e-09 36.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|240102894|ref|YP_002959203.1| - 5.4e-07 30.2 0.2 2.6e-06 28.1 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|240102894|ref|YP_002959203.1| - 1.9e-06 27.5 0.1 9e-06 25.3 0.0 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|240102894|ref|YP_002959203.1| - 0.00011 22.8 0.2 0.00024 21.7 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|240102894|ref|YP_002959203.1| - 0.012 15.3 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|240102894|ref|YP_002959203.1| - 0.018 13.7 0.2 2.9 6.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|240102894|ref|YP_002959203.1| - 0.05 13.3 0.2 0.17 11.6 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|240102894|ref|YP_002959203.1| - 0.09 13.2 0.2 0.26 11.7 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|240102894|ref|YP_002959203.1| - 0.097 12.2 0.1 0.26 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|240102894|ref|YP_002959203.1| - 0.36 11.2 1.7 1.7 9.0 1.6 2.1 1 1 0 1 1 1 0 AAA domain SBF PF01758.16 gi|240102895|ref|YP_002959204.1| - 4.7e-41 140.6 20.3 4.7e-41 140.6 20.3 1.8 2 0 0 2 2 2 1 Sodium Bile acid symporter family ALMT PF11744.8 gi|240102895|ref|YP_002959204.1| - 0.055 12.3 0.1 0.095 11.5 0.1 1.3 1 0 0 1 1 1 0 Aluminium activated malate transporter TauE PF01925.19 gi|240102897|ref|YP_002959206.1| - 3e-20 72.9 32.5 3e-20 72.9 32.5 1.6 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE HTH_5 PF01022.20 gi|240102898|ref|YP_002959207.1| - 3.7e-06 26.7 0.0 1.7e-05 24.6 0.0 1.9 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|240102898|ref|YP_002959207.1| - 7.7e-06 25.9 0.0 1.4e-05 25.1 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.10 gi|240102898|ref|YP_002959207.1| - 2.5e-05 24.1 0.0 3.2e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain FUR PF01475.19 gi|240102898|ref|YP_002959207.1| - 3e-05 24.2 0.0 4.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.14 gi|240102898|ref|YP_002959207.1| - 0.00085 19.2 0.1 0.0011 18.9 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|240102898|ref|YP_002959207.1| - 0.0015 18.1 0.0 0.0053 16.3 0.0 1.9 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|240102898|ref|YP_002959207.1| - 0.022 14.7 0.0 0.044 13.7 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|240102898|ref|YP_002959207.1| - 0.047 13.5 0.0 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Nitro_FeMo-Co PF02579.17 gi|240102899|ref|YP_002959208.1| - 1.5e-21 76.5 0.6 1.5e-21 76.5 0.6 1.4 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor SLAC1 PF03595.17 gi|240102900|ref|YP_002959209.1| - 3.9e-69 233.4 46.6 4.4e-69 233.2 46.6 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel UPF0051 PF01458.17 gi|240102901|ref|YP_002959210.1| - 2.1e-33 115.9 1.5 2.8e-33 115.5 1.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|240102902|ref|YP_002959211.1| - 2.4e-29 102.6 0.0 2.9e-29 102.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240102902|ref|YP_002959211.1| - 5.1e-08 33.1 0.5 0.0012 18.7 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240102902|ref|YP_002959211.1| - 1.3e-06 28.0 0.0 1.3e-05 24.8 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|240102902|ref|YP_002959211.1| - 0.0067 16.1 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|240102902|ref|YP_002959211.1| - 0.0075 16.5 0.1 0.15 12.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|240102902|ref|YP_002959211.1| - 0.0092 16.5 0.0 0.015 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|240102902|ref|YP_002959211.1| - 0.023 14.9 0.0 0.17 12.0 0.0 2.0 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|240102902|ref|YP_002959211.1| - 0.035 13.4 0.0 0.078 12.3 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|240102902|ref|YP_002959211.1| - 0.036 14.6 0.0 0.059 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|240102902|ref|YP_002959211.1| - 0.044 14.2 0.0 0.11 13.0 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|240102902|ref|YP_002959211.1| - 0.063 13.2 0.0 0.14 12.1 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase Mg_chelatase PF01078.21 gi|240102902|ref|YP_002959211.1| - 0.071 12.5 0.0 0.093 12.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI APS_kinase PF01583.20 gi|240102902|ref|YP_002959211.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_16 PF13191.6 gi|240102902|ref|YP_002959211.1| - 0.13 12.7 0.0 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|240102902|ref|YP_002959211.1| - 0.17 11.6 0.1 0.92 9.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|240102902|ref|YP_002959211.1| - 0.17 11.6 0.1 0.3 10.8 0.0 1.4 1 1 0 1 1 1 0 Cytidylate kinase AAA_13 PF13166.6 gi|240102902|ref|YP_002959211.1| - 0.26 9.9 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain zf-IS66 PF13005.7 gi|240102902|ref|YP_002959211.1| - 0.83 10.1 5.6 0.95 9.9 0.0 2.6 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Fer4_21 PF14697.6 gi|240102903|ref|YP_002959212.1| - 1.4e-06 28.3 7.6 2.2e-06 27.7 7.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|240102903|ref|YP_002959212.1| - 7.4e-06 25.6 14.4 0.0015 18.2 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240102903|ref|YP_002959212.1| - 3.4e-05 24.3 12.8 0.00017 22.1 12.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240102903|ref|YP_002959212.1| - 6.6e-05 23.0 9.4 0.00011 22.3 9.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240102903|ref|YP_002959212.1| - 0.00032 21.6 7.9 0.028 15.4 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|240102903|ref|YP_002959212.1| - 0.00036 20.4 15.1 0.012 15.7 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|240102903|ref|YP_002959212.1| - 0.00059 19.8 16.5 0.00078 19.4 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|240102903|ref|YP_002959212.1| - 0.0098 16.7 5.1 0.55 11.1 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240102903|ref|YP_002959212.1| - 0.026 14.6 13.1 0.21 11.7 11.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|240102903|ref|YP_002959212.1| - 1.6 9.4 12.3 37 5.0 12.3 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|240102903|ref|YP_002959212.1| - 8.3 7.2 14.4 2.2 9.0 3.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain TauE PF01925.19 gi|240102904|ref|YP_002959213.1| - 1.4e-41 142.7 36.1 1.5e-41 142.5 36.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE SPC25 PF06703.11 gi|240102904|ref|YP_002959213.1| - 1.8 8.4 4.9 15 5.3 0.2 2.8 2 1 1 3 3 3 0 Microsomal signal peptidase 25 kDa subunit (SPC25) SLAC1 PF03595.17 gi|240102905|ref|YP_002959214.1| - 1.4e-67 228.3 47.4 1.5e-67 228.2 47.4 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel TrmB PF01978.19 gi|240102906|ref|YP_002959215.1| - 7.4e-10 38.6 0.0 1.6e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|240102906|ref|YP_002959215.1| - 3.1e-07 30.2 0.1 6.6e-07 29.1 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|240102906|ref|YP_002959215.1| - 1.4e-06 27.8 0.1 3.9e-06 26.3 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|240102906|ref|YP_002959215.1| - 2.4e-06 27.3 0.9 4.1e-06 26.6 0.1 1.7 2 0 0 2 2 1 1 MarR family HTH_IclR PF09339.10 gi|240102906|ref|YP_002959215.1| - 8.2e-06 25.5 0.2 2.5e-05 24.0 0.2 1.8 2 0 0 2 2 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|240102906|ref|YP_002959215.1| - 3.8e-05 23.2 0.3 9.1e-05 22.0 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|240102906|ref|YP_002959215.1| - 4.1e-05 23.5 1.0 0.00012 22.1 0.1 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|240102906|ref|YP_002959215.1| - 5.1e-05 23.2 2.3 0.0001 22.2 0.1 2.4 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|240102906|ref|YP_002959215.1| - 0.00013 21.8 0.8 0.0011 18.9 0.1 2.3 2 0 0 2 2 2 1 HTH domain HTH_41 PF14502.6 gi|240102906|ref|YP_002959215.1| - 0.00017 21.2 0.0 0.0004 20.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|240102906|ref|YP_002959215.1| - 0.00032 21.0 0.0 0.00052 20.3 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor DUF2582 PF10771.9 gi|240102906|ref|YP_002959215.1| - 0.00079 19.5 0.0 0.0013 18.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix domain (DUF2582) HTH_27 PF13463.6 gi|240102906|ref|YP_002959215.1| - 0.0012 19.3 0.3 0.003 18.0 0.1 1.8 2 1 0 2 2 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|240102906|ref|YP_002959215.1| - 0.0022 17.9 0.1 0.0051 16.7 0.1 1.6 1 0 0 1 1 1 1 MarR family SMC_ScpB PF04079.16 gi|240102906|ref|YP_002959215.1| - 0.0034 17.0 0.4 0.0096 15.5 0.1 1.9 1 1 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_Mga PF08280.11 gi|240102906|ref|YP_002959215.1| - 0.0036 17.3 0.0 0.0074 16.3 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Sulfolobus_pRN PF05584.11 gi|240102906|ref|YP_002959215.1| - 0.0039 17.2 0.2 0.0087 16.1 0.2 1.6 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_9 PF08221.11 gi|240102906|ref|YP_002959215.1| - 0.0044 17.1 0.1 0.0096 16.0 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_35 PF13693.6 gi|240102906|ref|YP_002959215.1| - 0.0053 16.8 0.4 0.015 15.3 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|240102906|ref|YP_002959215.1| - 0.0074 16.3 0.1 0.015 15.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 gi|240102906|ref|YP_002959215.1| - 0.0099 15.9 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Rrf2 PF02082.20 gi|240102906|ref|YP_002959215.1| - 0.015 15.7 0.2 0.054 13.9 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator DprA_WH PF17782.1 gi|240102906|ref|YP_002959215.1| - 0.016 15.3 0.1 0.038 14.1 0.1 1.6 1 0 0 1 1 1 0 DprA winged helix domain Sigma70_r4 PF04545.16 gi|240102906|ref|YP_002959215.1| - 0.018 14.6 0.6 0.043 13.3 0.1 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|240102906|ref|YP_002959215.1| - 0.019 15.1 0.0 0.047 13.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.12 gi|240102906|ref|YP_002959215.1| - 0.019 15.2 0.1 0.034 14.4 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein HTH_19 PF12844.7 gi|240102906|ref|YP_002959215.1| - 0.02 14.9 0.2 0.11 12.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|240102906|ref|YP_002959215.1| - 0.022 14.8 0.0 0.06 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_10 PF04967.12 gi|240102906|ref|YP_002959215.1| - 0.025 14.4 0.1 0.046 13.5 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.6 gi|240102906|ref|YP_002959215.1| - 0.045 13.6 0.2 0.045 13.6 0.2 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF742 PF05331.11 gi|240102906|ref|YP_002959215.1| - 0.048 13.5 0.1 0.097 12.5 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF742) HTH_38 PF13936.6 gi|240102906|ref|YP_002959215.1| - 0.055 13.3 0.8 0.14 12.0 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|240102906|ref|YP_002959215.1| - 0.058 13.1 1.3 0.46 10.2 0.1 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_26 PF13443.6 gi|240102906|ref|YP_002959215.1| - 0.059 13.8 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Fe_dep_repress PF01325.19 gi|240102906|ref|YP_002959215.1| - 0.076 13.2 0.4 1.5 9.1 0.0 2.3 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_46 PF15977.5 gi|240102906|ref|YP_002959215.1| - 0.094 12.7 0.1 0.45 10.6 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA binding HTH_40 PF14493.6 gi|240102906|ref|YP_002959215.1| - 0.095 13.2 0.0 0.17 12.4 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_15 PF12324.8 gi|240102906|ref|YP_002959215.1| - 0.14 12.2 0.1 0.58 10.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase DUF5489 PF17592.2 gi|240102907|ref|YP_002959216.1| - 2.5 8.7 13.0 0.74 10.4 9.4 1.8 1 1 0 2 2 2 0 Family of unknown function (DUF5489) Trp_oprn_chp PF09534.10 gi|240102907|ref|YP_002959216.1| - 2.8 7.7 6.9 2.7 7.8 0.9 2.3 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF2085 PF09858.9 gi|240102907|ref|YP_002959216.1| - 3.3 8.2 7.2 11 6.6 3.7 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2085) ExoD PF06055.12 gi|240102907|ref|YP_002959216.1| - 4.7 6.6 9.4 0.55 9.6 4.9 1.6 2 0 0 2 2 2 0 Exopolysaccharide synthesis, ExoD Radical_SAM PF04055.21 gi|240102908|ref|YP_002959217.1| - 2.7e-29 102.7 0.1 3.3e-28 99.1 0.0 2.6 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|240102908|ref|YP_002959217.1| - 5.8e-11 42.8 0.0 4.6e-10 39.9 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|240102908|ref|YP_002959217.1| - 1.1e-09 38.7 0.2 1.1e-09 38.7 0.2 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|240102908|ref|YP_002959217.1| - 2.8e-07 30.7 0.0 6.6e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain HMGL-like PF00682.19 gi|240102908|ref|YP_002959217.1| - 4.9e-05 23.0 0.0 7.8e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 HMGL-like HTH_22 PF13309.6 gi|240102908|ref|YP_002959217.1| - 0.089 12.9 0.0 1.4 9.1 0.0 2.8 3 0 0 3 3 3 0 HTH domain DUF1906 PF08924.11 gi|240102908|ref|YP_002959217.1| - 0.2 11.8 0.0 0.33 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) NMD3 PF04981.13 gi|240102909|ref|YP_002959218.1| - 3.9e-64 216.4 0.4 3.9e-64 216.4 0.4 1.5 2 0 0 2 2 2 1 NMD3 family HTH_32 PF13565.6 gi|240102909|ref|YP_002959218.1| - 0.0063 17.1 0.0 0.025 15.2 0.0 2.1 2 1 0 2 2 2 1 Homeodomain-like domain EFP PF01132.20 gi|240102909|ref|YP_002959218.1| - 0.086 12.9 0.2 0.27 11.3 0.2 1.9 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain DZR PF12773.7 gi|240102909|ref|YP_002959218.1| - 0.66 10.1 6.3 17 5.5 3.8 2.9 2 1 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|240102909|ref|YP_002959218.1| - 1.4 8.4 4.5 13 5.3 0.0 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Rpr2 PF04032.16 gi|240102909|ref|YP_002959218.1| - 2.4 8.5 4.7 6.3 7.1 0.0 2.7 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Zn-ribbon_8 PF09723.10 gi|240102909|ref|YP_002959218.1| - 3 8.1 5.5 9.4 6.4 0.1 2.9 3 0 0 3 3 3 0 Zinc ribbon domain DUF424 PF04242.13 gi|240102910|ref|YP_002959219.1| - 1.8e-32 111.4 0.0 2e-32 111.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) HTH_5 PF01022.20 gi|240102911|ref|YP_002959220.1| - 1e-13 50.9 0.6 2.7e-13 49.6 0.2 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|240102911|ref|YP_002959220.1| - 3.9e-13 49.2 2.1 2.9e-11 43.2 0.1 2.6 2 1 1 3 3 3 1 Helix-turn-helix domain ArsR PF09824.9 gi|240102911|ref|YP_002959220.1| - 3.5e-05 23.5 0.2 0.00037 20.1 0.0 2.0 2 0 0 2 2 2 1 ArsR transcriptional regulator TrmB PF01978.19 gi|240102911|ref|YP_002959220.1| - 3.9e-05 23.5 2.3 0.00012 21.9 0.1 2.5 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|240102911|ref|YP_002959220.1| - 5.7e-05 22.9 0.1 0.00016 21.5 0.1 1.7 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|240102911|ref|YP_002959220.1| - 0.00034 20.5 1.1 0.0021 18.0 0.3 2.7 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|240102911|ref|YP_002959220.1| - 0.00037 20.0 1.8 0.0047 16.4 1.8 2.4 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|240102911|ref|YP_002959220.1| - 0.0079 16.1 0.2 0.017 15.0 0.2 1.6 1 0 0 1 1 1 1 HTH domain HTH_CodY PF08222.11 gi|240102911|ref|YP_002959220.1| - 0.02 14.4 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain SMC_ScpB PF04079.16 gi|240102911|ref|YP_002959220.1| - 0.026 14.2 3.9 0.28 10.8 0.1 2.1 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB DUF4795 PF16043.5 gi|240102911|ref|YP_002959220.1| - 0.027 14.1 1.4 0.042 13.5 1.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) GntR PF00392.21 gi|240102911|ref|YP_002959220.1| - 0.041 13.5 1.4 0.085 12.5 0.2 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.16 gi|240102911|ref|YP_002959220.1| - 0.049 13.4 0.1 0.22 11.3 0.0 2.1 3 0 0 3 3 3 0 LexA DNA binding domain Poxvirus_B22R_N PF13169.6 gi|240102911|ref|YP_002959220.1| - 0.057 13.9 0.2 0.096 13.2 0.2 1.3 1 0 0 1 1 1 0 Poxvirus B22R protein N-terminal HTH_27 PF13463.6 gi|240102911|ref|YP_002959220.1| - 0.058 13.9 0.0 0.15 12.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain IF2_N PF04760.15 gi|240102911|ref|YP_002959220.1| - 0.058 13.2 0.1 0.3 10.9 0.0 2.1 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_10 PF04967.12 gi|240102911|ref|YP_002959220.1| - 0.062 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain PA28_alpha PF02251.18 gi|240102911|ref|YP_002959220.1| - 0.12 12.4 0.4 0.32 11.1 0.4 1.7 1 0 0 1 1 1 0 Proteasome activator pa28 alpha subunit AAA_6 PF12774.7 gi|240102911|ref|YP_002959220.1| - 0.17 10.8 0.1 0.21 10.5 0.1 1.1 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region DUF2250 PF10007.9 gi|240102911|ref|YP_002959220.1| - 0.17 12.0 1.6 0.54 10.4 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) RBD-FIP PF09457.10 gi|240102911|ref|YP_002959220.1| - 0.25 11.3 4.2 12 5.9 0.0 2.6 2 0 0 2 2 2 0 FIP domain Ribosomal_S17e PF00833.18 gi|240102912|ref|YP_002959221.1| - 3.6e-17 62.4 0.6 4.2e-17 62.2 0.6 1.0 1 0 0 1 1 1 1 Ribosomal S17 Peptidase_M24 PF00557.24 gi|240102913|ref|YP_002959222.1| - 3.6e-44 151.0 0.1 4.3e-44 150.7 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 CNF1 PF05785.12 gi|240102913|ref|YP_002959222.1| - 0.0092 15.3 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 1 Rho-activating domain of cytotoxic necrotizing factor DisA-linker PF10635.9 gi|240102913|ref|YP_002959222.1| - 0.078 12.7 0.1 1.5 8.6 0.0 2.3 2 0 0 2 2 2 0 DisA bacterial checkpoint controller linker region DUF896 PF05979.12 gi|240102913|ref|YP_002959222.1| - 0.087 12.7 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF896) ATP-cone PF03477.16 gi|240102913|ref|YP_002959222.1| - 0.097 13.3 0.1 4.3 8.0 0.0 2.3 2 0 0 2 2 2 0 ATP cone domain TrkH PF02386.16 gi|240102914|ref|YP_002959223.1| - 2.8e-66 224.0 23.3 3.4e-65 220.4 23.3 1.9 1 1 0 1 1 1 1 Cation transport protein TPR_19 PF14559.6 gi|240102915|ref|YP_002959224.1| - 0.007 16.8 6.4 2 9.0 0.1 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|240102915|ref|YP_002959224.1| - 0.037 14.8 10.8 0.74 10.8 0.2 4.2 3 1 1 4 4 4 0 Tetratricopeptide repeat AbiEi_4 PF13338.6 gi|240102915|ref|YP_002959224.1| - 0.07 13.3 0.2 1.5 9.0 0.0 2.6 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Pas_Saposin PF09016.10 gi|240102915|ref|YP_002959224.1| - 0.096 13.0 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 Pas factor saposin fold TPR_12 PF13424.6 gi|240102915|ref|YP_002959224.1| - 0.19 12.0 8.8 0.34 11.2 2.1 3.7 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|240102915|ref|YP_002959224.1| - 1.4 9.7 9.8 96 4.0 0.0 4.5 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|240102915|ref|YP_002959224.1| - 6.2 7.5 8.2 21 5.8 0.0 3.2 3 1 0 3 3 3 0 Tetratricopeptide repeat CYTH PF01928.21 gi|240102916|ref|YP_002959225.1| - 6.9e-35 120.6 6.8 8.1e-35 120.4 6.8 1.1 1 0 0 1 1 1 1 CYTH domain PC4 PF02229.16 gi|240102916|ref|YP_002959225.1| - 0.11 12.2 0.2 2.5 7.8 0.0 2.7 2 0 0 2 2 2 0 Transcriptional Coactivator p15 (PC4) Peptidase_M54 PF07998.11 gi|240102917|ref|YP_002959226.1| - 1.7e-30 106.5 0.0 2.6e-30 105.9 0.0 1.3 1 1 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|240102917|ref|YP_002959226.1| - 0.00037 20.4 0.0 0.00087 19.2 0.1 1.5 2 0 0 2 2 2 1 Matrixin Metallopep PF12044.8 gi|240102917|ref|YP_002959226.1| - 0.016 13.8 1.5 0.021 13.4 1.5 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_3 PF13582.6 gi|240102917|ref|YP_002959226.1| - 0.021 15.3 0.0 0.026 15.0 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|240102917|ref|YP_002959226.1| - 0.14 11.3 0.1 0.21 10.8 0.1 1.2 1 0 0 1 1 1 0 Met-zincin Reprolysin_5 PF13688.6 gi|240102917|ref|YP_002959226.1| - 0.15 12.2 0.5 0.23 11.6 0.5 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M43 PF05572.13 gi|240102917|ref|YP_002959226.1| - 0.17 11.8 0.1 0.24 11.3 0.1 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M66 PF10462.9 gi|240102917|ref|YP_002959226.1| - 0.18 10.7 0.2 0.24 10.3 0.2 1.1 1 0 0 1 1 1 0 Peptidase M66 Peptidase_M42 PF05343.14 gi|240102918|ref|YP_002959227.1| - 2.1e-96 322.4 0.8 2.4e-96 322.2 0.8 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|240102918|ref|YP_002959227.1| - 1.5e-08 34.6 0.3 5.1e-08 32.9 0.3 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|240102918|ref|YP_002959227.1| - 2.7e-06 26.5 0.0 0.0032 16.3 0.0 2.5 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.17 gi|240102918|ref|YP_002959227.1| - 0.0047 16.6 1.0 0.24 11.1 0.1 2.5 2 1 0 2 2 2 2 Peptidase family M28 Ribosomal_S3Ae PF01015.18 gi|240102919|ref|YP_002959228.1| - 4.5e-68 228.8 2.0 5.1e-68 228.6 2.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Pcc1 PF09341.10 gi|240102920|ref|YP_002959229.1| - 0.00023 21.2 0.0 0.00026 21.1 0.0 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF3220 PF11516.8 gi|240102920|ref|YP_002959229.1| - 0.053 13.7 0.0 0.1 12.8 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3120) TFIIA_gamma_N PF02268.16 gi|240102920|ref|YP_002959229.1| - 0.076 13.0 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain DHHA1 PF02272.19 gi|240102921|ref|YP_002959230.1| - 8.1e-22 78.1 4.0 2.2e-21 76.7 1.9 2.6 3 0 0 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|240102921|ref|YP_002959230.1| - 0.0067 16.7 0.0 0.014 15.7 0.0 1.5 1 0 0 1 1 1 1 DHH family CDC45 PF02724.14 gi|240102921|ref|YP_002959230.1| - 0.031 12.6 0.0 1.1 7.4 0.0 2.4 3 0 0 3 3 3 0 CDC45-like protein Ribosomal_S13_N PF08069.12 gi|240102922|ref|YP_002959231.1| - 2.3e-28 98.0 0.2 9.1e-28 96.1 0.1 1.9 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|240102922|ref|YP_002959231.1| - 2.2e-20 72.6 0.8 3.1e-20 72.2 0.8 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DUF5340 PF17275.2 gi|240102922|ref|YP_002959231.1| - 0.0096 16.0 0.0 0.36 11.0 0.1 2.3 2 0 0 2 2 2 1 Family of unknown function (DUF5340) GAGA PF09237.11 gi|240102922|ref|YP_002959231.1| - 0.1 12.5 0.1 0.25 11.2 0.1 1.6 1 0 0 1 1 1 0 GAGA factor RNA_binding PF01877.17 gi|240102923|ref|YP_002959232.1| - 6.8e-17 61.8 0.0 9e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 RNA binding ACOX PF01756.19 gi|240102923|ref|YP_002959232.1| - 0.049 13.2 0.0 0.14 11.7 0.0 1.6 1 1 1 2 2 2 0 Acyl-CoA oxidase Zip PF02535.22 gi|240102924|ref|YP_002959233.1| - 4.2e-21 75.5 27.2 4.9e-19 68.7 9.6 3.1 1 1 2 3 3 3 3 ZIP Zinc transporter Halogen_Hydrol PF10112.9 gi|240102924|ref|YP_002959233.1| - 2.2 8.2 6.5 3.3 7.7 0.9 2.7 2 1 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein AAA_17 PF13207.6 gi|240102925|ref|YP_002959234.1| - 6.8e-18 65.4 0.0 1e-17 64.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|240102925|ref|YP_002959234.1| - 5.1e-13 49.7 0.0 7.7e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|240102925|ref|YP_002959234.1| - 8.5e-09 35.7 0.0 1.3e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240102925|ref|YP_002959234.1| - 0.0012 19.2 0.1 0.002 18.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|240102925|ref|YP_002959234.1| - 0.0018 18.5 0.1 0.0048 17.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.10 gi|240102925|ref|YP_002959234.1| - 0.0041 16.6 0.9 0.0047 16.4 0.1 1.7 2 0 0 2 2 2 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|240102925|ref|YP_002959234.1| - 0.021 14.1 0.0 0.032 13.5 0.0 1.8 1 1 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|240102925|ref|YP_002959234.1| - 0.047 14.0 0.1 0.11 12.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain ADK PF00406.22 gi|240102925|ref|YP_002959234.1| - 0.049 13.7 0.0 0.058 13.5 0.0 1.3 1 0 0 1 1 1 0 Adenylate kinase NTPase_1 PF03266.15 gi|240102925|ref|YP_002959234.1| - 0.06 13.2 0.9 0.43 10.5 0.9 2.4 1 1 0 1 1 1 0 NTPase MeaB PF03308.16 gi|240102925|ref|YP_002959234.1| - 0.065 12.2 0.3 0.28 10.1 0.0 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 gi|240102925|ref|YP_002959234.1| - 0.084 12.0 0.1 0.18 11.0 0.1 1.6 1 1 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|240102925|ref|YP_002959234.1| - 0.087 12.8 0.1 0.16 11.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Viral_helicase1 PF01443.18 gi|240102925|ref|YP_002959234.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase APS_kinase PF01583.20 gi|240102925|ref|YP_002959234.1| - 0.12 12.3 0.1 0.22 11.4 0.0 1.7 1 1 1 2 2 2 0 Adenylylsulphate kinase ATP_bind_2 PF03668.15 gi|240102925|ref|YP_002959234.1| - 0.13 11.5 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop ATPase protein family DEAD PF00270.29 gi|240102927|ref|YP_002959236.1| - 2.7e-25 89.2 0.0 5e-25 88.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|240102927|ref|YP_002959236.1| - 1.5e-12 48.0 0.3 7.8e-12 45.6 0.1 2.4 3 0 0 3 3 3 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|240102927|ref|YP_002959236.1| - 1.1e-10 41.8 0.0 3.5e-09 37.0 0.0 3.0 2 1 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|240102927|ref|YP_002959236.1| - 9.9e-10 38.7 0.0 1.9e-08 34.5 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|240102927|ref|YP_002959236.1| - 1.8e-06 28.0 0.0 8.2e-06 25.8 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|240102927|ref|YP_002959236.1| - 1.5e-05 24.6 0.0 0.022 14.6 0.1 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|240102927|ref|YP_002959236.1| - 2.6e-05 24.4 0.0 6.3e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|240102927|ref|YP_002959236.1| - 0.00014 21.6 0.0 0.0013 18.5 0.0 2.6 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.6 gi|240102927|ref|YP_002959236.1| - 0.0024 18.1 0.0 0.0099 16.1 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) RNA_pol_A_CTD PF03118.15 gi|240102927|ref|YP_002959236.1| - 0.04 13.7 0.0 0.95 9.3 0.0 2.8 2 1 1 3 3 3 0 Bacterial RNA polymerase, alpha chain C terminal domain ABC_tran PF00005.27 gi|240102929|ref|YP_002959238.1| - 1.8e-32 112.7 0.0 2.4e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|240102929|ref|YP_002959238.1| - 3.9e-21 75.3 0.3 6.6e-21 74.6 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|240102929|ref|YP_002959238.1| - 3.4e-09 36.9 0.5 3.4e-07 30.4 0.1 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240102929|ref|YP_002959238.1| - 1.2e-06 28.1 0.0 5.5e-06 26.0 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|240102929|ref|YP_002959238.1| - 3.7e-05 24.0 0.1 0.00033 20.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240102929|ref|YP_002959238.1| - 0.0024 18.3 0.0 0.014 15.8 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|240102929|ref|YP_002959238.1| - 0.0026 18.2 0.0 0.07 13.5 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|240102929|ref|YP_002959238.1| - 0.0063 16.3 0.0 0.0097 15.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 gi|240102929|ref|YP_002959238.1| - 0.01 15.5 0.0 0.025 14.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|240102929|ref|YP_002959238.1| - 0.018 14.5 0.0 0.27 10.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein TrwB_AAD_bind PF10412.9 gi|240102929|ref|YP_002959238.1| - 0.09 11.7 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ATP-synt_ab PF00006.25 gi|240102929|ref|YP_002959238.1| - 0.1 12.2 0.0 0.1 12.2 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SbcCD_C PF13558.6 gi|240102929|ref|YP_002959238.1| - 0.11 12.7 0.0 1.2 9.4 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|240102929|ref|YP_002959238.1| - 0.12 12.3 0.1 0.51 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|240102930|ref|YP_002959239.1| - 2.7e-25 89.5 0.0 3.8e-25 89.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|240102930|ref|YP_002959239.1| - 4e-22 78.5 0.1 8.1e-22 77.5 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|240102930|ref|YP_002959239.1| - 2.2e-06 27.7 0.0 0.00022 21.1 0.0 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|240102930|ref|YP_002959239.1| - 0.0046 17.2 0.1 0.018 15.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|240102930|ref|YP_002959239.1| - 0.0051 16.6 0.2 0.45 10.2 0.0 2.4 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA PF00004.29 gi|240102930|ref|YP_002959239.1| - 0.0052 17.2 0.6 0.77 10.2 0.6 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|240102930|ref|YP_002959239.1| - 0.0084 15.6 0.3 0.12 11.8 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|240102930|ref|YP_002959239.1| - 0.017 15.5 0.0 0.022 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.7 gi|240102930|ref|YP_002959239.1| - 0.021 13.8 0.0 0.23 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain ATP-synt_ab PF00006.25 gi|240102930|ref|YP_002959239.1| - 0.063 12.9 0.0 0.11 12.1 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.14 gi|240102930|ref|YP_002959239.1| - 0.17 11.9 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PIF1 PF05970.14 gi|240102930|ref|YP_002959239.1| - 0.17 11.0 0.3 12 4.9 0.1 2.1 2 0 0 2 2 2 0 PIF1-like helicase AAA_13 PF13166.6 gi|240102930|ref|YP_002959239.1| - 0.18 10.4 0.0 0.73 8.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|240102931|ref|YP_002959240.1| - 8.4e-34 116.9 8.5 8.4e-34 116.9 8.5 2.3 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|240102931|ref|YP_002959240.1| - 1.9e-05 24.5 1.0 1.9e-05 24.5 1.0 3.4 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C MotB_plug PF13677.6 gi|240102931|ref|YP_002959240.1| - 2.2 7.9 5.0 0.34 10.6 0.3 2.1 2 0 0 2 2 2 0 Membrane MotB of proton-channel complex MotA/MotB BPD_transp_1 PF00528.22 gi|240102932|ref|YP_002959241.1| - 1.5e-43 148.7 13.8 1.5e-43 148.7 13.8 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component CbiN PF02553.15 gi|240102932|ref|YP_002959241.1| - 0.25 11.4 0.1 0.25 11.4 0.1 2.1 2 0 0 2 2 2 0 Cobalt transport protein component CbiN SBP_bac_5 PF00496.22 gi|240102933|ref|YP_002959242.1| - 9.9e-69 232.1 13.7 2.3e-68 230.9 13.7 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Mucin PF01456.17 gi|240102933|ref|YP_002959242.1| - 0.012 15.6 0.7 0.018 15.0 0.7 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein AsnC_trans_reg PF01037.21 gi|240102934|ref|YP_002959243.1| - 4.1e-14 52.3 0.2 4.6e-14 52.1 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|240102934|ref|YP_002959243.1| - 4.4e-06 26.7 0.5 7e-06 26.0 0.5 1.3 1 1 0 1 1 1 1 NapD protein ACT_4 PF13291.6 gi|240102934|ref|YP_002959243.1| - 0.018 15.6 0.4 1.6 9.4 0.0 2.2 2 0 0 2 2 2 0 ACT domain GYD PF08734.11 gi|240102934|ref|YP_002959243.1| - 0.025 14.5 0.1 0.031 14.2 0.1 1.3 1 0 0 1 1 1 0 GYD domain SRP19 PF01922.17 gi|240102935|ref|YP_002959244.1| - 2.4e-12 47.6 0.1 4e-12 46.9 0.1 1.4 1 1 0 1 1 1 1 SRP19 protein DUF257 PF03192.13 gi|240102936|ref|YP_002959245.1| - 4.7e-08 33.1 0.0 1.2e-07 31.8 0.0 1.7 1 1 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 GCD14 PF08704.10 gi|240102937|ref|YP_002959246.1| - 1.5e-28 100.2 0.0 4.2e-27 95.4 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|240102937|ref|YP_002959246.1| - 5.8e-12 45.7 0.0 7.5e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|240102937|ref|YP_002959246.1| - 5.5e-11 42.6 0.0 7.3e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14_N PF14801.6 gi|240102937|ref|YP_002959246.1| - 5e-09 35.9 0.1 1.5e-08 34.3 0.1 1.8 2 0 0 2 2 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_25 PF13649.6 gi|240102937|ref|YP_002959246.1| - 1.5e-07 32.1 0.0 2.4e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|240102937|ref|YP_002959246.1| - 3.7e-07 29.5 0.0 5.3e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 gi|240102937|ref|YP_002959246.1| - 6.4e-07 28.9 0.0 9.4e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|240102937|ref|YP_002959246.1| - 3.5e-06 27.6 0.0 6.4e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|240102937|ref|YP_002959246.1| - 4e-05 23.2 0.0 6.5e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_3 PF01596.17 gi|240102937|ref|YP_002959246.1| - 4.9e-05 22.6 0.0 6.7e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_16 PF10294.9 gi|240102937|ref|YP_002959246.1| - 0.00014 21.7 0.0 0.00021 21.0 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_18 PF12847.7 gi|240102937|ref|YP_002959246.1| - 0.00025 21.0 0.0 0.00037 20.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|240102937|ref|YP_002959246.1| - 0.00029 20.7 0.0 0.00043 20.1 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.12 gi|240102937|ref|YP_002959246.1| - 0.00045 20.9 0.0 0.001 19.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|240102937|ref|YP_002959246.1| - 0.0008 20.4 0.0 0.0016 19.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|240102937|ref|YP_002959246.1| - 0.00092 18.6 0.0 0.0014 17.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|240102937|ref|YP_002959246.1| - 0.0016 17.9 0.0 0.0021 17.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltr_RsmB-F PF01189.17 gi|240102937|ref|YP_002959246.1| - 0.0063 16.2 0.0 0.055 13.1 0.0 2.0 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F UPF0020 PF01170.18 gi|240102937|ref|YP_002959246.1| - 0.023 14.4 0.2 0.39 10.4 0.1 2.6 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 gi|240102937|ref|YP_002959246.1| - 0.025 14.6 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|240102937|ref|YP_002959246.1| - 0.035 14.2 0.0 1.3 9.1 0.0 2.1 1 1 1 2 2 2 0 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|240102937|ref|YP_002959246.1| - 0.084 12.3 0.0 0.29 10.6 0.0 1.8 1 1 1 2 2 2 0 Putative methyltransferase HGD-D PF06050.13 gi|240102937|ref|YP_002959246.1| - 0.11 12.2 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component NCE101 PF11654.8 gi|240102938|ref|YP_002959247.1| - 0.04 13.6 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Non-classical export protein 1 DUF2177 PF09945.9 gi|240102938|ref|YP_002959247.1| - 0.089 12.9 1.1 0.12 12.5 1.1 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2177) DUF1129 PF06570.11 gi|240102938|ref|YP_002959247.1| - 0.1 12.1 0.0 0.12 11.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Phage_TAC_3 PF06896.11 gi|240102940|ref|YP_002959249.1| - 0.095 13.3 0.0 0.13 12.9 0.0 1.2 1 0 0 1 1 1 0 Phage tail assembly chaperone proteins, TAC Big_7 PF17957.1 gi|240102941|ref|YP_002959250.1| - 0.083 13.7 0.0 0.12 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial Ig domain Utp13 PF08625.11 gi|240102942|ref|YP_002959251.1| - 0.012 15.5 0.3 0.028 14.3 0.1 1.6 2 0 0 2 2 2 0 Utp13 specific WD40 associated domain CDI PF02234.19 gi|240102942|ref|YP_002959251.1| - 0.032 14.4 0.0 0.3 11.3 0.0 2.1 2 0 0 2 2 2 0 Cyclin-dependent kinase inhibitor ATP_bind_1 PF03029.17 gi|240102945|ref|YP_002959254.1| - 0.028 14.2 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Phi-29_GP3 PF05435.11 gi|240102949|ref|YP_002959258.1| - 0.013 15.0 0.1 0.015 14.8 0.1 1.1 1 0 0 1 1 1 0 Phi-29 DNA terminal protein GP3 DHODB_Fe-S_bind PF10418.9 gi|240102952|ref|YP_002959261.1| - 6.5e-11 41.9 3.7 1e-10 41.2 3.7 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.6 gi|240102952|ref|YP_002959261.1| - 0.039 14.0 0.1 0.071 13.1 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_2 PF07992.14 gi|240102953|ref|YP_002959262.1| - 2e-39 135.6 2.6 3.1e-39 135.0 2.6 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 gi|240102953|ref|YP_002959262.1| - 4.2e-39 132.8 0.7 6.5e-39 132.2 0.7 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox PF00070.27 gi|240102953|ref|YP_002959262.1| - 7.4e-16 58.5 5.2 1.6e-07 31.8 0.2 3.8 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|240102953|ref|YP_002959262.1| - 6e-15 55.3 4.5 2e-10 40.5 0.2 2.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|240102953|ref|YP_002959262.1| - 6.9e-10 39.0 0.1 4.5e-08 33.2 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|240102953|ref|YP_002959262.1| - 9.8e-10 38.1 0.4 0.00063 19.1 0.1 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|240102953|ref|YP_002959262.1| - 1.6e-07 30.8 3.0 0.0002 20.6 0.0 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 gi|240102953|ref|YP_002959262.1| - 1.8e-07 30.7 0.2 0.0073 15.7 0.0 2.7 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|240102953|ref|YP_002959262.1| - 1.2e-06 27.9 0.3 2.3e-05 23.8 0.1 2.3 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|240102953|ref|YP_002959262.1| - 2.1e-06 27.2 0.2 3.1e-05 23.4 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|240102953|ref|YP_002959262.1| - 2.7e-06 26.3 5.8 3.4e-05 22.7 0.4 2.7 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|240102953|ref|YP_002959262.1| - 3.2e-06 26.5 7.1 0.00025 20.3 0.4 3.1 2 1 1 3 3 3 2 FAD binding domain PALP PF00291.25 gi|240102953|ref|YP_002959262.1| - 9.1e-06 25.3 0.0 0.059 12.8 0.1 2.3 1 1 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme NAD_binding_7 PF13241.6 gi|240102953|ref|YP_002959262.1| - 1.8e-05 25.1 1.6 0.054 13.9 0.4 2.6 2 1 0 2 2 2 2 Putative NAD(P)-binding FMO-like PF00743.19 gi|240102953|ref|YP_002959262.1| - 2.1e-05 23.1 0.0 0.00046 18.7 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like Shikimate_DH PF01488.20 gi|240102953|ref|YP_002959262.1| - 3e-05 24.1 0.5 0.32 11.0 0.1 3.4 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|240102953|ref|YP_002959262.1| - 4e-05 23.2 0.3 0.081 12.5 0.1 2.4 2 0 0 2 2 2 2 Acetohydroxy acid isomeroreductase, NADPH-binding domain FAD_oxidored PF12831.7 gi|240102953|ref|YP_002959262.1| - 4.7e-05 22.9 3.0 0.0093 15.4 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|240102953|ref|YP_002959262.1| - 0.00019 20.9 3.5 0.0033 16.8 0.1 2.7 2 1 1 3 3 3 1 Flavin containing amine oxidoreductase DAO PF01266.24 gi|240102953|ref|YP_002959262.1| - 0.00046 19.9 7.1 0.00096 18.8 1.1 3.2 4 0 0 4 4 4 1 FAD dependent oxidoreductase XdhC_C PF13478.6 gi|240102953|ref|YP_002959262.1| - 0.0036 17.8 0.0 0.87 10.1 0.0 2.5 2 0 0 2 2 2 1 XdhC Rossmann domain NAD_binding_9 PF13454.6 gi|240102953|ref|YP_002959262.1| - 0.0044 17.0 0.4 0.091 12.8 0.2 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding F420_oxidored PF03807.17 gi|240102953|ref|YP_002959262.1| - 0.0076 16.8 5.5 0.79 10.3 0.9 3.5 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|240102953|ref|YP_002959262.1| - 0.013 15.4 0.4 0.37 10.6 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YjeF_N PF03853.15 gi|240102953|ref|YP_002959262.1| - 0.039 13.8 0.0 8.6 6.2 0.0 2.6 2 0 0 2 2 2 0 YjeF-related protein N-terminus Lycopene_cycl PF05834.12 gi|240102953|ref|YP_002959262.1| - 0.063 12.3 0.3 0.063 12.3 0.3 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein AdoHcyase_NAD PF00670.21 gi|240102953|ref|YP_002959262.1| - 0.13 12.4 0.4 0.95 9.5 0.0 2.4 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TrkA_N PF02254.18 gi|240102953|ref|YP_002959262.1| - 0.2 12.0 2.2 11 6.3 0.1 3.3 3 1 0 3 3 2 0 TrkA-N domain Fer4_10 PF13237.6 gi|240102953|ref|YP_002959262.1| - 0.28 11.3 5.9 0.56 10.4 5.9 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240102953|ref|YP_002959262.1| - 3.5 8.4 7.1 0.36 11.5 0.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain ATPase_2 PF01637.18 gi|240102954|ref|YP_002959263.1| - 8.2e-17 61.9 0.0 2.2e-16 60.5 0.0 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|240102954|ref|YP_002959263.1| - 8.3e-10 38.8 0.1 2.7e-07 30.7 0.1 2.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|240102954|ref|YP_002959263.1| - 7.1e-05 23.1 0.0 0.0027 18.0 0.0 3.1 2 2 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|240102954|ref|YP_002959263.1| - 0.00082 19.8 0.1 0.0026 18.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain Penicillinase_R PF03965.16 gi|240102954|ref|YP_002959263.1| - 0.027 14.8 0.1 0.14 12.5 0.0 2.2 3 0 0 3 3 3 0 Penicillinase repressor TrmB PF01978.19 gi|240102955|ref|YP_002959264.1| - 1.8e-09 37.4 0.7 3.2e-09 36.6 0.3 1.6 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|240102955|ref|YP_002959264.1| - 5.5e-06 26.3 1.8 1.4e-05 25.0 1.8 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|240102955|ref|YP_002959264.1| - 6e-06 26.0 1.5 1.6e-05 24.7 0.6 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|240102955|ref|YP_002959264.1| - 9e-05 22.3 0.3 0.00013 21.8 0.3 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.12 gi|240102955|ref|YP_002959264.1| - 0.00021 21.2 0.9 0.00045 20.1 0.2 1.9 2 0 0 2 2 2 1 HTH domain Replic_Relax PF13814.6 gi|240102955|ref|YP_002959264.1| - 0.00025 21.2 0.2 0.00029 21.0 0.2 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_24 PF13412.6 gi|240102955|ref|YP_002959264.1| - 0.00037 20.0 1.1 0.00037 20.0 1.1 2.1 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 gi|240102955|ref|YP_002959264.1| - 0.00056 19.9 0.1 0.0067 16.5 0.1 2.2 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR_2 PF12802.7 gi|240102955|ref|YP_002959264.1| - 0.00064 19.6 0.1 0.0012 18.7 0.1 1.6 1 0 0 1 1 1 1 MarR family CinA_KH PF18146.1 gi|240102955|ref|YP_002959264.1| - 0.00086 19.4 1.1 1.4 9.1 0.0 3.0 3 0 0 3 3 3 1 Damage-inducible protein CinA KH domain MarR PF01047.22 gi|240102955|ref|YP_002959264.1| - 0.0017 18.3 0.4 0.0035 17.2 0.4 1.5 1 0 0 1 1 1 1 MarR family FaeA PF04703.12 gi|240102955|ref|YP_002959264.1| - 0.0019 18.5 0.4 0.0033 17.8 0.1 1.6 2 0 0 2 2 2 1 FaeA-like protein DUF2250 PF10007.9 gi|240102955|ref|YP_002959264.1| - 0.0045 17.1 0.5 0.016 15.3 0.1 1.9 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_29 PF13551.6 gi|240102955|ref|YP_002959264.1| - 0.0053 16.7 0.1 0.012 15.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix DUF4423 PF14394.6 gi|240102955|ref|YP_002959264.1| - 0.0096 15.6 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) GntR PF00392.21 gi|240102955|ref|YP_002959264.1| - 0.024 14.3 0.5 0.024 14.3 0.5 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_Mga PF08280.11 gi|240102955|ref|YP_002959264.1| - 0.025 14.6 0.1 0.077 13.0 0.1 1.9 1 1 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.10 gi|240102955|ref|YP_002959264.1| - 0.026 14.3 2.5 0.12 12.2 0.8 2.6 2 1 1 3 3 3 0 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|240102955|ref|YP_002959264.1| - 0.033 14.0 0.0 0.076 12.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HrcA_DNA-bdg PF03444.15 gi|240102955|ref|YP_002959264.1| - 0.033 13.8 0.1 0.064 12.9 0.1 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_AsnC-type PF13404.6 gi|240102955|ref|YP_002959264.1| - 0.045 13.6 1.4 0.073 12.9 0.3 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_40 PF14493.6 gi|240102955|ref|YP_002959264.1| - 0.048 14.1 0.2 0.095 13.2 0.2 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|240102955|ref|YP_002959264.1| - 0.049 13.4 1.1 0.15 11.8 0.1 2.1 2 0 0 2 2 2 0 LexA DNA binding domain Dimerisation2 PF16864.5 gi|240102955|ref|YP_002959264.1| - 0.068 13.2 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain Rrf2 PF02082.20 gi|240102955|ref|YP_002959264.1| - 0.071 13.5 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator EAP30 PF04157.16 gi|240102955|ref|YP_002959264.1| - 0.088 12.1 0.3 0.16 11.2 0.1 1.5 2 0 0 2 2 2 0 EAP30/Vps36 family UbiA PF01040.18 gi|240102956|ref|YP_002959265.1| - 1.1e-32 113.4 11.8 1.4e-32 113.0 11.8 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family MerC PF03203.14 gi|240102956|ref|YP_002959265.1| - 5.1 7.6 9.5 3.9 8.0 4.4 2.9 1 1 2 3 3 3 0 MerC mercury resistance protein LPG_synthase_TM PF03706.13 gi|240102957|ref|YP_002959266.1| - 3.7e-24 85.8 29.9 5.6e-24 85.2 29.9 1.2 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF2070 PF09843.9 gi|240102957|ref|YP_002959266.1| - 0.095 11.0 16.3 0.13 10.6 16.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) MttA_Hcf106 PF02416.16 gi|240102957|ref|YP_002959266.1| - 0.28 10.5 2.8 0.3 10.4 1.0 2.0 1 1 0 1 1 1 0 mttA/Hcf106 family Glycos_transf_1 PF00534.20 gi|240102958|ref|YP_002959267.1| - 6.5e-45 152.7 0.0 1.1e-44 151.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|240102958|ref|YP_002959267.1| - 1.2e-37 129.4 0.2 1.9e-37 128.7 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|240102958|ref|YP_002959267.1| - 4.7e-29 101.6 0.1 3.5e-28 98.7 0.1 2.3 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|240102958|ref|YP_002959267.1| - 2.2e-11 44.5 0.0 1e-09 39.0 0.0 2.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|240102958|ref|YP_002959267.1| - 3.5e-10 40.1 0.0 7.2e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|240102958|ref|YP_002959267.1| - 8.4e-07 28.9 0.4 0.00018 21.3 0.0 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|240102958|ref|YP_002959267.1| - 8.2e-05 22.6 0.0 0.00017 21.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like PIGA PF08288.12 gi|240102958|ref|YP_002959267.1| - 0.0028 18.2 0.2 0.0057 17.2 0.2 1.5 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) GCV_H PF01597.19 gi|240102960|ref|YP_002959269.1| - 1.6e-48 163.6 1.3 1.8e-48 163.5 1.3 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|240102960|ref|YP_002959269.1| - 3e-08 33.4 0.7 6.6e-08 32.3 0.7 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|240102960|ref|YP_002959269.1| - 6.1e-05 22.9 0.0 7e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl_2 PF13533.6 gi|240102960|ref|YP_002959269.1| - 0.0024 17.6 0.3 0.1 12.5 0.0 2.9 2 1 1 3 3 3 1 Biotin-lipoyl like NQRA PF05896.11 gi|240102960|ref|YP_002959269.1| - 0.18 11.2 0.1 0.24 10.8 0.1 1.2 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) RrnaAD PF00398.20 gi|240102961|ref|YP_002959270.1| - 1.3e-54 185.1 0.1 1.4e-54 185.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|240102961|ref|YP_002959270.1| - 1.1e-06 29.2 0.0 2.6e-06 28.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240102961|ref|YP_002959270.1| - 8.2e-05 23.2 0.0 0.00022 21.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240102961|ref|YP_002959270.1| - 0.00027 20.8 0.0 0.00037 20.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|240102961|ref|YP_002959270.1| - 0.00094 18.3 0.0 0.0034 16.5 0.0 1.8 2 0 0 2 2 2 1 DREV methyltransferase MTS PF05175.14 gi|240102961|ref|YP_002959270.1| - 0.0028 17.2 0.0 0.005 16.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|240102961|ref|YP_002959270.1| - 0.16 11.7 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|240102961|ref|YP_002959270.1| - 0.19 12.5 0.0 0.36 11.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DUF655 PF04919.12 gi|240102962|ref|YP_002959271.1| - 2.2e-70 236.3 0.2 2.6e-70 236.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|240102962|ref|YP_002959271.1| - 7e-05 23.0 0.0 0.00016 21.9 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|240102962|ref|YP_002959271.1| - 0.00018 21.7 0.0 0.00045 20.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Plant_tran PF04827.14 gi|240102962|ref|YP_002959271.1| - 0.014 15.0 0.0 0.016 14.8 0.0 1.1 1 0 0 1 1 1 0 Plant transposon protein RNA_pol_Rpb4 PF03874.16 gi|240102963|ref|YP_002959272.1| - 2.8e-08 34.1 3.5 4.6e-08 33.4 3.5 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb4 Borrelia_REV PF03978.13 gi|240102963|ref|YP_002959272.1| - 0.0079 16.2 0.6 0.011 15.7 0.5 1.5 1 1 0 1 1 1 1 Borrelia burgdorferi REV protein APAF1_C PF17908.1 gi|240102963|ref|YP_002959272.1| - 0.043 13.8 0.1 0.064 13.3 0.1 1.3 1 0 0 1 1 1 0 APAF-1 helical domain Ribosomal_L21e PF01157.18 gi|240102964|ref|YP_002959273.1| - 3.3e-35 120.0 1.4 3.6e-35 119.8 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|240102966|ref|YP_002959275.1| - 2.5e-14 53.6 0.8 2.5e-14 53.6 0.8 2.6 2 1 0 2 2 2 1 THUMP domain HypA PF01155.19 gi|240102967|ref|YP_002959276.1| - 0.0081 16.2 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_5 PF01022.20 gi|240102967|ref|YP_002959276.1| - 0.0083 16.0 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DZR PF12773.7 gi|240102967|ref|YP_002959276.1| - 0.014 15.4 0.2 0.021 14.8 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon TackOD1 PF18551.1 gi|240102967|ref|YP_002959276.1| - 0.071 12.8 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|240102967|ref|YP_002959276.1| - 0.08 13.1 2.1 0.17 12.1 2.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|240102967|ref|YP_002959276.1| - 1.6 8.9 7.6 0.82 9.8 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HalOD2 PF18547.1 gi|240102967|ref|YP_002959276.1| - 2.6 8.0 4.3 9.9 6.2 0.6 2.3 2 0 0 2 2 2 0 Halobacterial output domain 2 PRC PF05239.16 gi|240102969|ref|YP_002959278.1| - 7.6e-14 51.6 2.0 8.1e-14 51.5 2.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain Bac_export_2 PF01312.19 gi|240102970|ref|YP_002959279.1| - 4.4 6.4 5.7 6 6.0 5.7 1.3 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family CTP-dep_RFKase PF01982.16 gi|240102971|ref|YP_002959280.1| - 2.6e-37 127.6 0.0 3.5e-37 127.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_27 PF13463.6 gi|240102971|ref|YP_002959280.1| - 1.4e-09 38.3 0.9 3.2e-09 37.1 0.9 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|240102971|ref|YP_002959280.1| - 4.6e-08 32.8 1.4 1.1e-07 31.6 1.4 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|240102971|ref|YP_002959280.1| - 6.6e-08 32.4 2.1 1.3e-07 31.4 2.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|240102971|ref|YP_002959280.1| - 5.2e-07 29.5 0.7 5.2e-07 29.5 0.7 1.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|240102971|ref|YP_002959280.1| - 4.4e-06 26.1 0.7 4.4e-06 26.1 0.7 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding SgrR_N PF12793.7 gi|240102971|ref|YP_002959280.1| - 4e-05 23.8 0.3 6.3e-05 23.2 0.3 1.2 1 0 0 1 1 1 1 Sugar transport-related sRNA regulator N-term Rrf2 PF02082.20 gi|240102971|ref|YP_002959280.1| - 9e-05 22.8 0.2 0.00015 22.0 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|240102971|ref|YP_002959280.1| - 0.00012 22.1 3.2 0.00013 22.0 1.5 2.0 3 0 0 3 3 2 1 Helix-turn-helix domain FeoC PF09012.10 gi|240102971|ref|YP_002959280.1| - 0.00033 20.7 0.1 0.00055 20.0 0.1 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_38 PF13936.6 gi|240102971|ref|YP_002959280.1| - 0.00068 19.3 0.4 0.002 17.9 0.4 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|240102971|ref|YP_002959280.1| - 0.00068 19.4 1.4 0.0018 18.0 0.8 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain DUF4364 PF14277.6 gi|240102971|ref|YP_002959280.1| - 0.00069 19.4 0.1 0.0011 18.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) LexA_DNA_bind PF01726.16 gi|240102971|ref|YP_002959280.1| - 0.002 17.8 1.4 0.44 10.4 0.2 3.0 3 0 0 3 3 3 1 LexA DNA binding domain HTH_28 PF13518.6 gi|240102971|ref|YP_002959280.1| - 0.003 17.6 0.2 0.006 16.7 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|240102971|ref|YP_002959280.1| - 0.0031 17.5 0.3 0.0054 16.7 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_45 PF14947.6 gi|240102971|ref|YP_002959280.1| - 0.0032 17.4 0.1 0.005 16.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|240102971|ref|YP_002959280.1| - 0.0084 16.0 0.1 0.018 14.9 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|240102971|ref|YP_002959280.1| - 0.0096 15.7 0.8 0.021 14.6 0.1 1.8 2 0 0 2 2 2 1 HTH DNA binding domain Fe_dep_repress PF01325.19 gi|240102971|ref|YP_002959280.1| - 0.017 15.3 0.0 0.039 14.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|240102971|ref|YP_002959280.1| - 0.029 14.1 0.4 0.058 13.2 0.4 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_12 PF08461.10 gi|240102971|ref|YP_002959280.1| - 0.03 14.3 2.9 0.03 14.3 2.9 2.0 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain GntR PF00392.21 gi|240102971|ref|YP_002959280.1| - 0.034 13.8 1.3 0.083 12.6 1.3 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|240102971|ref|YP_002959280.1| - 0.066 13.2 0.2 0.16 11.9 0.2 1.7 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.6 gi|240102971|ref|YP_002959280.1| - 0.14 12.4 0.2 0.62 10.3 0.2 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|240102971|ref|YP_002959280.1| - 0.15 12.2 0.1 0.33 11.1 0.0 1.5 2 0 0 2 2 1 0 B-block binding subunit of TFIIIC Endonuclease_5 PF04493.14 gi|240102972|ref|YP_002959281.1| - 2.9e-41 141.3 0.0 7.8e-34 117.1 0.0 2.0 1 1 1 2 2 2 2 Endonuclease V Translin PF01997.16 gi|240102973|ref|YP_002959282.1| - 1.1e-13 51.6 0.0 8.1e-12 45.6 0.0 2.1 1 1 0 1 1 1 1 Translin family NBD94 PF16830.5 gi|240102973|ref|YP_002959282.1| - 0.19 12.1 0.3 2 8.8 0.0 2.3 2 1 0 2 2 2 0 Nucleotide-Binding Domain 94 of RH Asparaginase PF00710.20 gi|240102974|ref|YP_002959283.1| - 6.9e-64 214.9 0.2 1.1e-63 214.3 0.2 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|240102974|ref|YP_002959283.1| - 7e-38 129.4 0.1 1.7e-36 124.9 0.0 2.2 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|240102974|ref|YP_002959283.1| - 3.4e-20 71.1 0.2 6.6e-20 70.2 0.2 1.5 1 0 0 1 1 1 1 GatD N-terminal domain DUF1583 PF07622.11 gi|240102974|ref|YP_002959283.1| - 0.13 11.0 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1583) DUF104 PF01954.16 gi|240102975|ref|YP_002959284.1| - 5.5e-19 68.3 1.0 6.4e-19 68.1 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 Phenyl_P_gamma PF09662.10 gi|240102975|ref|YP_002959284.1| - 0.079 13.1 0.0 0.086 13.0 0.0 1.1 1 0 0 1 1 1 0 Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma) HEPN_AbiU2 PF18734.1 gi|240102975|ref|YP_002959284.1| - 0.088 12.3 0.0 0.095 12.2 0.0 1.0 1 0 0 1 1 1 0 AbiU2 PIN PF01850.21 gi|240102976|ref|YP_002959285.1| - 8.3e-18 65.1 0.0 2.8e-17 63.4 0.0 1.7 1 1 0 1 1 1 1 PIN domain GatB_N PF02934.15 gi|240102977|ref|YP_002959286.1| - 7.5e-65 219.0 0.0 1.4e-64 218.1 0.0 1.6 1 1 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|240102977|ref|YP_002959286.1| - 9.1e-30 103.5 7.1 4.2e-28 98.1 4.7 2.4 2 0 0 2 2 2 2 GatB domain GAD PF02938.14 gi|240102977|ref|YP_002959286.1| - 3.9e-17 62.3 1.4 7.5e-17 61.4 0.2 2.2 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|240102977|ref|YP_002959286.1| - 1.2e-09 38.4 1.3 1.2e-09 38.4 1.3 2.7 3 0 0 3 3 3 1 Yqey-like protein DUF4473 PF14747.6 gi|240102977|ref|YP_002959286.1| - 0.011 16.3 0.1 11 6.7 0.0 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4473) Ldh_1_C PF02866.18 gi|240102977|ref|YP_002959286.1| - 0.031 14.2 0.2 0.097 12.6 0.2 1.8 1 0 0 1 1 1 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain Lys-AminoMut_A PF09043.11 gi|240102977|ref|YP_002959286.1| - 0.12 10.8 0.8 4.9 5.5 0.4 2.2 2 0 0 2 2 2 0 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit cwf21 PF08312.12 gi|240102977|ref|YP_002959286.1| - 0.15 12.2 3.5 82 3.5 0.0 3.7 3 1 0 3 3 3 0 cwf21 domain DUF5304 PF17230.2 gi|240102977|ref|YP_002959286.1| - 0.28 11.4 1.4 0.44 10.8 0.2 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5304) RecX PF02631.16 gi|240102977|ref|YP_002959286.1| - 0.87 10.0 5.5 1.4 9.4 0.1 3.7 3 1 0 3 3 3 0 RecX family Glycos_transf_2 PF00535.26 gi|240102978|ref|YP_002959287.1| - 2.2e-35 122.0 0.1 2.8e-35 121.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|240102978|ref|YP_002959287.1| - 6.8e-32 111.2 0.0 8.5e-32 110.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|240102978|ref|YP_002959287.1| - 6.1e-15 55.7 2.0 6.1e-15 55.7 2.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|240102978|ref|YP_002959287.1| - 1.3e-12 47.8 0.0 6.3e-12 45.5 0.1 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|240102978|ref|YP_002959287.1| - 8.4e-11 41.6 0.0 1.4e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|240102978|ref|YP_002959287.1| - 0.00052 18.8 2.1 0.78 8.3 1.1 3.1 1 1 2 3 3 3 2 Chitin synthase Glyco_tranf_2_4 PF13704.6 gi|240102978|ref|YP_002959287.1| - 0.059 13.9 0.0 0.13 12.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Toprim_3 PF13362.6 gi|240102978|ref|YP_002959287.1| - 0.083 13.3 0.1 0.2 12.0 0.1 1.6 1 1 0 1 1 1 0 Toprim domain DUF2244 PF10003.9 gi|240102978|ref|YP_002959287.1| - 0.087 12.5 2.4 3.1 7.4 2.3 2.7 3 0 0 3 3 3 0 Integral membrane protein (DUF2244) Spheroidin PF05541.12 gi|240102978|ref|YP_002959287.1| - 0.15 9.8 0.0 0.2 9.4 0.0 1.1 1 0 0 1 1 1 0 Entomopoxvirus spheroidin protein DUF3211 PF11485.8 gi|240102979|ref|YP_002959288.1| - 0.0063 16.7 0.0 0.0096 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) HIT PF01230.23 gi|240102980|ref|YP_002959289.1| - 5.3e-15 55.9 0.0 7.8e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|240102980|ref|YP_002959289.1| - 3e-07 30.9 0.0 4.8e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|240102980|ref|YP_002959289.1| - 0.00064 19.6 0.0 0.00091 19.1 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Met_10 PF02475.16 gi|240102982|ref|YP_002959291.1| - 1.5e-70 237.0 0.0 2e-70 236.6 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|240102982|ref|YP_002959291.1| - 1.6e-16 59.9 0.0 3.6e-16 58.8 0.0 1.6 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 gi|240102982|ref|YP_002959291.1| - 2.2e-05 24.0 0.0 3.5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|240102982|ref|YP_002959291.1| - 0.00023 20.8 0.0 0.0004 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|240102982|ref|YP_002959291.1| - 0.00069 19.2 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|240102982|ref|YP_002959291.1| - 0.00071 19.3 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltr_RsmB-F PF01189.17 gi|240102982|ref|YP_002959291.1| - 0.0082 15.8 0.0 0.032 13.9 0.0 1.9 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F TRM PF02005.16 gi|240102982|ref|YP_002959291.1| - 0.063 12.4 0.0 0.082 12.1 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase PmbA_TldD PF01523.16 gi|240102983|ref|YP_002959292.1| - 1.3e-45 156.5 0.1 1.8e-45 156.0 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|240102984|ref|YP_002959293.1| - 9e-44 150.4 0.1 1.5e-43 149.6 0.1 1.4 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Peptidase_S9 PF00326.21 gi|240102986|ref|YP_002959295.1| - 9.4e-60 201.7 0.0 1.3e-59 201.2 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|240102986|ref|YP_002959295.1| - 4.7e-09 36.0 0.0 5.1e-08 32.7 0.0 2.9 2 0 0 2 2 2 1 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 gi|240102986|ref|YP_002959295.1| - 9.8e-09 35.2 0.0 4.7e-06 26.4 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 gi|240102986|ref|YP_002959295.1| - 5.6e-08 31.8 0.1 2.4e-06 26.4 0.1 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) DPPIV_N PF00930.21 gi|240102986|ref|YP_002959295.1| - 8.1e-08 31.4 0.0 0.032 13.0 0.0 3.7 2 1 1 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region DUF2920 PF11144.8 gi|240102986|ref|YP_002959295.1| - 0.00021 20.6 0.0 0.022 13.9 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) DUF5050 PF16472.5 gi|240102986|ref|YP_002959295.1| - 0.002 17.4 0.0 0.042 13.1 0.0 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF5050) Abhydrolase_1 PF00561.20 gi|240102986|ref|YP_002959295.1| - 0.0023 17.6 0.1 0.0046 16.6 0.1 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.18 gi|240102986|ref|YP_002959295.1| - 0.0024 17.5 0.0 0.0069 16.0 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|240102986|ref|YP_002959295.1| - 0.014 14.7 0.3 1 8.6 0.0 2.1 2 0 0 2 2 2 0 Serine aminopeptidase, S33 WYL PF13280.6 gi|240102986|ref|YP_002959295.1| - 0.15 12.1 0.2 0.93 9.5 0.0 2.1 2 0 0 2 2 2 0 WYL domain JUPITER PF17054.5 gi|240102986|ref|YP_002959295.1| - 0.18 11.3 0.0 0.28 10.6 0.0 1.2 1 0 0 1 1 1 0 Microtubule-Associated protein Jupiter RHH_3 PF12651.7 gi|240102987|ref|YP_002959296.1| - 0.0009 19.2 0.1 0.01 15.8 0.1 2.0 1 1 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|240102987|ref|YP_002959296.1| - 0.021 14.8 0.0 0.88 9.6 0.1 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family CcdA PF07362.12 gi|240102987|ref|YP_002959296.1| - 0.085 13.3 0.0 0.094 13.2 0.0 1.1 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA DUF1931 PF09123.11 gi|240102990|ref|YP_002959299.1| - 1.4e-44 151.6 2.6 1.5e-44 151.4 2.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) MvaI_BcnI PF15515.6 gi|240102990|ref|YP_002959299.1| - 0.019 14.8 0.1 0.025 14.4 0.1 1.1 1 0 0 1 1 1 0 MvaI/BcnI restriction endonuclease family OST3_OST6 PF04756.13 gi|240102990|ref|YP_002959299.1| - 0.08 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family DNTTIP1_dimer PF18192.1 gi|240102990|ref|YP_002959299.1| - 0.19 12.1 1.3 0.82 10.1 0.6 2.4 2 1 0 2 2 2 0 DNTTIP1 dimerisation domain NTP_transf_3 PF12804.7 gi|240102991|ref|YP_002959300.1| - 7.7e-05 23.1 0.0 0.00011 22.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain ArsR PF09824.9 gi|240102991|ref|YP_002959300.1| - 0.13 11.9 0.0 0.3 10.7 0.0 1.6 2 0 0 2 2 2 0 ArsR transcriptional regulator PEGA PF08308.11 gi|240102992|ref|YP_002959301.1| - 2.4e-21 75.4 0.1 5.5e-15 55.0 0.0 2.7 2 0 0 2 2 2 2 PEGA domain CarboxypepD_reg PF13620.6 gi|240102992|ref|YP_002959301.1| - 0.00034 20.8 7.2 0.028 14.7 0.0 3.6 2 1 1 3 3 3 2 Carboxypeptidase regulatory-like domain DUF5122 PF17164.4 gi|240102992|ref|YP_002959301.1| - 0.011 16.0 7.1 1.6 9.1 0.1 5.7 6 0 0 6 6 6 0 Domain of unknown function (DUF5122) beta-propeller PQQ_3 PF13570.6 gi|240102992|ref|YP_002959301.1| - 0.016 15.7 12.8 0.12 12.9 0.9 4.5 4 0 0 4 4 4 0 PQQ-like domain SBBP PF06739.11 gi|240102992|ref|YP_002959301.1| - 0.017 15.1 3.6 0.077 13.0 0.2 3.0 2 0 0 2 2 2 0 Beta-propeller repeat Mucin PF01456.17 gi|240102992|ref|YP_002959301.1| - 0.053 13.5 12.9 0.09 12.8 12.9 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein SSP160 PF06933.11 gi|240102992|ref|YP_002959301.1| - 0.48 8.6 13.6 0.71 8.0 13.6 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Sporozoite_P67 PF05642.11 gi|240102992|ref|YP_002959301.1| - 1.1 7.2 10.8 2 6.4 10.8 1.3 1 0 0 1 1 1 0 Sporozoite P67 surface antigen SprA-related PF12118.8 gi|240102992|ref|YP_002959301.1| - 6 5.9 6.8 8.7 5.4 6.8 1.1 1 0 0 1 1 1 0 SprA-related family SIS PF01380.22 gi|240102993|ref|YP_002959302.1| - 7.3e-60 200.6 0.6 1e-32 112.7 0.8 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|240102993|ref|YP_002959302.1| - 1.8e-22 80.0 0.1 5.6e-22 78.4 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|240102993|ref|YP_002959302.1| - 2.7e-19 69.3 0.0 5.9e-19 68.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|240102993|ref|YP_002959302.1| - 0.00039 20.5 0.7 0.0067 16.4 0.0 2.7 2 1 0 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|240102993|ref|YP_002959302.1| - 0.0066 15.4 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Enolase_C PF00113.22 gi|240102993|ref|YP_002959302.1| - 0.075 12.3 0.1 0.14 11.4 0.1 1.4 1 0 0 1 1 1 0 Enolase, C-terminal TIM barrel domain OST_P2 PF18235.1 gi|240102994|ref|YP_002959303.1| - 2.4e-60 202.3 0.7 1.6e-59 199.6 0.4 2.2 2 0 0 2 2 2 1 Oligosaccharyltransferase Peripheral 2 domain STT3 PF02516.14 gi|240102994|ref|YP_002959303.1| - 2.8e-09 36.5 28.1 4.9e-09 35.6 28.1 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit TMEM252 PF15664.5 gi|240102994|ref|YP_002959303.1| - 0.12 12.1 0.3 0.31 10.7 0.3 1.6 1 0 0 1 1 1 0 Transmembrane protein 252 family S4 PF01479.25 gi|240102994|ref|YP_002959303.1| - 0.15 11.8 0.1 0.33 10.7 0.1 1.5 1 0 0 1 1 1 0 S4 domain Dpy19 PF10034.9 gi|240102994|ref|YP_002959303.1| - 0.25 9.5 10.6 0.5 8.5 10.6 1.4 1 0 0 1 1 1 0 Q-cell neuroblast polarisation Methyltransf_11 PF08241.12 gi|240102995|ref|YP_002959304.1| - 3.3e-28 98.2 0.0 5.6e-28 97.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|240102995|ref|YP_002959304.1| - 2.6e-24 85.7 0.0 3.9e-24 85.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240102995|ref|YP_002959304.1| - 1.1e-23 83.9 0.0 1.3e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|240102995|ref|YP_002959304.1| - 1.3e-16 60.7 0.0 1.7e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|240102995|ref|YP_002959304.1| - 3.8e-16 59.1 0.0 6.1e-15 55.2 0.0 2.1 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|240102995|ref|YP_002959304.1| - 2.6e-14 53.7 0.0 4.2e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|240102995|ref|YP_002959304.1| - 4.9e-10 39.3 0.0 7.1e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|240102995|ref|YP_002959304.1| - 1.1e-07 30.8 0.0 1.5e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase TehB PF03848.14 gi|240102995|ref|YP_002959304.1| - 3.2e-07 30.0 0.0 4.3e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB DREV PF05219.12 gi|240102995|ref|YP_002959304.1| - 1.4e-05 24.3 0.0 2e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.15 gi|240102995|ref|YP_002959304.1| - 0.00017 21.5 0.0 0.00024 21.0 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|240102995|ref|YP_002959304.1| - 0.00035 19.9 0.0 0.00074 18.9 0.0 1.5 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|240102995|ref|YP_002959304.1| - 0.00088 19.4 0.0 0.037 14.1 0.0 2.1 1 1 0 1 1 1 1 FtsJ-like methyltransferase MTS PF05175.14 gi|240102995|ref|YP_002959304.1| - 0.0016 18.0 0.0 0.0034 16.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.11 gi|240102995|ref|YP_002959304.1| - 0.0064 15.4 0.0 0.012 14.6 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_2 PF00891.18 gi|240102995|ref|YP_002959304.1| - 0.014 14.7 0.0 0.025 13.9 0.0 1.5 1 0 0 1 1 1 0 O-methyltransferase domain NodS PF05401.11 gi|240102995|ref|YP_002959304.1| - 0.017 14.8 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) tRNA_U5-meth_tr PF05958.11 gi|240102995|ref|YP_002959304.1| - 0.05 12.6 0.0 0.065 12.2 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Pox_MCEL PF03291.16 gi|240102995|ref|YP_002959304.1| - 0.091 11.9 0.0 0.19 10.8 0.0 1.4 2 0 0 2 2 2 0 mRNA capping enzyme N6_N4_Mtase PF01555.18 gi|240102995|ref|YP_002959304.1| - 0.22 11.2 0.0 1.1 8.9 0.0 1.9 2 0 0 2 2 2 0 DNA methylase DRE2_N PF16803.5 gi|240102995|ref|YP_002959304.1| - 0.24 11.7 0.0 0.34 11.1 0.0 1.3 1 0 0 1 1 1 0 Fe-S cluster assembly protein DRE2 N-terminus Thiamine_BP PF01910.17 gi|240102996|ref|YP_002959305.1| - 4.5e-31 106.6 0.0 5e-31 106.5 0.0 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Glyco_transf_6 PF03414.13 gi|240102996|ref|YP_002959305.1| - 0.074 11.8 0.0 0.078 11.7 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 6 PDT PF00800.18 gi|240102996|ref|YP_002959305.1| - 0.16 11.7 0.0 0.17 11.7 0.0 1.1 1 0 0 1 1 1 0 Prephenate dehydratase ADK PF00406.22 gi|240102997|ref|YP_002959306.1| - 2.8e-41 141.1 0.0 3.6e-41 140.7 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|240102997|ref|YP_002959306.1| - 7.5e-20 71.8 0.0 1.3e-19 70.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|240102997|ref|YP_002959306.1| - 1.9e-19 69.3 2.4 3.1e-19 68.7 2.4 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_33 PF13671.6 gi|240102997|ref|YP_002959306.1| - 8.4e-08 32.5 0.0 2.2e-07 31.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.6 gi|240102997|ref|YP_002959306.1| - 4.8e-05 23.9 0.0 0.00013 22.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|240102997|ref|YP_002959306.1| - 0.0012 18.6 0.0 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase TF_Zn_Ribbon PF08271.12 gi|240102997|ref|YP_002959306.1| - 0.0013 18.2 1.0 0.0026 17.2 1.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding AAA_22 PF13401.6 gi|240102997|ref|YP_002959306.1| - 0.0078 16.5 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain zf-ribbon_3 PF13248.6 gi|240102997|ref|YP_002959306.1| - 0.013 14.9 1.4 0.41 10.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain AAA PF00004.29 gi|240102997|ref|YP_002959306.1| - 0.016 15.6 0.0 0.031 14.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DZR PF12773.7 gi|240102997|ref|YP_002959306.1| - 0.023 14.7 0.3 0.059 13.4 0.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|240102997|ref|YP_002959306.1| - 0.024 14.4 0.3 1.6 8.6 0.0 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain Zeta_toxin PF06414.12 gi|240102997|ref|YP_002959306.1| - 0.054 12.8 0.0 0.49 9.6 0.0 2.1 1 1 0 1 1 1 0 Zeta toxin Prok-RING_1 PF14446.6 gi|240102997|ref|YP_002959306.1| - 0.087 12.8 3.4 0.55 10.2 0.4 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-RRN7 PF11781.8 gi|240102997|ref|YP_002959306.1| - 0.099 12.3 1.5 0.7 9.6 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 AAA_24 PF13479.6 gi|240102997|ref|YP_002959306.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain zf-C4_Topoisom PF01396.19 gi|240102997|ref|YP_002959306.1| - 0.12 12.1 0.3 10 6.0 0.1 2.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF3039 PF11238.8 gi|240102997|ref|YP_002959306.1| - 0.12 12.1 0.5 0.25 11.2 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) Nudix_N_2 PF14803.6 gi|240102997|ref|YP_002959306.1| - 0.14 12.1 5.3 5.1 7.1 0.4 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-C2HC5 PF06221.13 gi|240102997|ref|YP_002959306.1| - 0.15 12.1 0.1 0.22 11.6 0.1 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type AAA_28 PF13521.6 gi|240102997|ref|YP_002959306.1| - 0.15 12.3 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|240102997|ref|YP_002959306.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|240102997|ref|YP_002959306.1| - 0.18 11.6 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zn_ribbon_recom PF13408.6 gi|240102997|ref|YP_002959306.1| - 0.25 11.9 2.1 9.1 6.9 0.2 2.4 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_4 PF13717.6 gi|240102997|ref|YP_002959306.1| - 0.39 10.7 1.4 0.68 9.9 0.2 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|240102997|ref|YP_002959306.1| - 0.42 10.4 3.0 2.7 7.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2258 PF10015.9 gi|240102998|ref|YP_002959307.1| - 6e-23 80.8 2.3 1.3e-22 79.7 0.0 2.2 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) DUF3450 PF11932.8 gi|240102998|ref|YP_002959307.1| - 0.0015 17.9 1.1 0.0027 17.1 1.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) APG6_N PF17675.1 gi|240102998|ref|YP_002959307.1| - 0.0054 17.3 8.3 0.006 17.1 8.3 1.2 1 0 0 1 1 1 1 Apg6 coiled-coil region GldM_N PF12081.8 gi|240102998|ref|YP_002959307.1| - 0.017 15.2 1.7 0.028 14.5 1.7 1.3 1 0 0 1 1 1 0 GldM N-terminal domain DUF1706 PF08020.11 gi|240102998|ref|YP_002959307.1| - 0.017 15.1 2.7 0.03 14.3 0.5 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1706) Cdh1_DBD_1 PF18196.1 gi|240102998|ref|YP_002959307.1| - 0.031 14.6 4.8 0.045 14.1 4.8 1.2 1 0 0 1 1 1 0 Chromodomain helicase DNA-binding domain 1 XhlA PF10779.9 gi|240102998|ref|YP_002959307.1| - 0.032 14.4 9.3 0.048 13.9 9.3 1.3 1 0 0 1 1 1 0 Haemolysin XhlA Jnk-SapK_ap_N PF09744.9 gi|240102998|ref|YP_002959307.1| - 0.043 14.0 12.5 0.056 13.7 12.5 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 AAA_23 PF13476.6 gi|240102998|ref|YP_002959307.1| - 0.05 14.1 4.0 0.057 13.9 4.0 1.2 1 0 0 1 1 1 0 AAA domain COG6 PF06419.11 gi|240102998|ref|YP_002959307.1| - 0.052 11.8 6.0 0.065 11.4 6.0 1.1 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 DUF2203 PF09969.9 gi|240102998|ref|YP_002959307.1| - 0.054 14.2 5.2 1.5 9.5 2.8 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) TAFH PF07531.14 gi|240102998|ref|YP_002959307.1| - 0.056 13.6 0.6 3.7 7.7 0.5 2.3 2 1 0 2 2 2 0 NHR1 homology to TAF DUF1664 PF07889.12 gi|240102998|ref|YP_002959307.1| - 0.062 13.3 2.8 0.1 12.6 2.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.19 gi|240102998|ref|YP_002959307.1| - 0.076 10.9 0.4 0.069 11.1 0.4 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family EMP24_GP25L PF01105.24 gi|240102998|ref|YP_002959307.1| - 0.085 12.8 0.4 0.099 12.6 0.4 1.3 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Mt_ATP-synt_D PF05873.12 gi|240102998|ref|YP_002959307.1| - 0.14 12.0 2.7 0.19 11.6 2.7 1.2 1 0 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) Baculo_PEP_C PF04513.12 gi|240102998|ref|YP_002959307.1| - 0.18 11.8 0.4 0.27 11.3 0.4 1.2 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus UPF0242 PF06785.11 gi|240102998|ref|YP_002959307.1| - 0.18 11.9 8.2 0.22 11.6 8.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Fib_alpha PF08702.10 gi|240102998|ref|YP_002959307.1| - 0.19 11.9 4.5 0.25 11.5 4.5 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF4988 PF16378.5 gi|240102998|ref|YP_002959307.1| - 0.2 11.3 1.7 0.28 10.8 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function Occludin_ELL PF07303.13 gi|240102998|ref|YP_002959307.1| - 0.23 12.2 4.1 0.44 11.3 4.1 1.4 1 0 0 1 1 1 0 Occludin homology domain KxDL PF10241.9 gi|240102998|ref|YP_002959307.1| - 0.27 11.5 3.7 0.51 10.6 3.7 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein DUF2205 PF10224.9 gi|240102998|ref|YP_002959307.1| - 0.52 10.3 9.1 0.98 9.5 9.1 1.6 1 0 0 1 1 1 0 Short coiled-coil protein Baculo_F PF12259.8 gi|240102998|ref|YP_002959307.1| - 0.6 8.6 2.6 0.76 8.2 2.6 1.1 1 0 0 1 1 1 0 Baculovirus F protein HisKA PF00512.25 gi|240102998|ref|YP_002959307.1| - 0.65 10.1 4.1 1.8 8.7 4.1 1.8 1 1 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Troponin PF00992.20 gi|240102998|ref|YP_002959307.1| - 0.65 10.3 14.0 1.1 9.6 14.0 1.4 1 0 0 1 1 1 0 Troponin HNOBA PF07701.14 gi|240102998|ref|YP_002959307.1| - 0.91 8.9 3.7 1.4 8.3 3.7 1.3 1 0 0 1 1 1 0 Heme NO binding associated Cauli_AT PF03233.13 gi|240102998|ref|YP_002959307.1| - 1.2 9.1 5.4 2.1 8.2 5.4 1.3 1 0 0 1 1 1 0 Aphid transmission protein YabA PF06156.13 gi|240102998|ref|YP_002959307.1| - 1.2 9.8 6.4 1.7 9.3 5.4 1.7 1 1 0 1 1 1 0 Initiation control protein YabA CENP-H PF05837.12 gi|240102998|ref|YP_002959307.1| - 1.2 9.5 9.9 2.9 8.3 10.1 1.5 2 0 0 2 2 1 0 Centromere protein H (CENP-H) Atg14 PF10186.9 gi|240102998|ref|YP_002959307.1| - 3.1 6.8 8.0 3.8 6.5 8.0 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 SlyX PF04102.12 gi|240102998|ref|YP_002959307.1| - 3.7 8.3 8.3 6.3 7.5 7.6 1.8 2 0 0 2 2 1 0 SlyX TMPIT PF07851.13 gi|240102998|ref|YP_002959307.1| - 7.1 5.8 6.1 9.1 5.4 6.1 1.1 1 0 0 1 1 1 0 TMPIT-like protein CstA PF02554.14 gi|240102999|ref|YP_002959308.1| - 4.4e-110 368.1 26.1 4.4e-110 368.1 26.1 2.1 2 1 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|240102999|ref|YP_002959308.1| - 1.5e-30 105.9 14.8 1.5e-30 105.9 14.8 2.6 2 1 0 2 2 2 1 5TM C-terminal transporter carbon starvation CstA DUF1514 PF07438.11 gi|240102999|ref|YP_002959308.1| - 0.56 10.1 2.7 1.2 9.0 0.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1514) INCENP_ARK-bind PF03941.15 gi|240103001|ref|YP_002959310.1| - 0.078 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Inner centromere protein, ARK binding region ArsA_ATPase PF02374.15 gi|240103002|ref|YP_002959311.1| - 2.2e-76 257.0 0.1 2.8e-76 256.6 0.1 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|240103002|ref|YP_002959311.1| - 9.4e-16 58.2 0.0 1.7e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|240103002|ref|YP_002959311.1| - 4.2e-13 49.5 0.0 1.2e-12 47.9 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|240103002|ref|YP_002959311.1| - 8.7e-08 31.9 0.1 4.6e-07 29.5 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|240103002|ref|YP_002959311.1| - 2.2e-06 27.3 2.7 2.4e-05 23.9 0.2 2.7 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase SRP54 PF00448.22 gi|240103002|ref|YP_002959311.1| - 1e-05 25.3 0.4 2.2e-05 24.2 0.4 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 gi|240103002|ref|YP_002959311.1| - 0.00017 21.1 0.0 0.00026 20.5 0.0 1.3 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ATP_bind_1 PF03029.17 gi|240103002|ref|YP_002959311.1| - 0.00027 20.8 0.5 0.0009 19.1 0.3 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein MipZ PF09140.11 gi|240103002|ref|YP_002959311.1| - 0.0029 17.0 0.3 0.036 13.4 0.2 2.2 1 1 0 2 2 2 1 ATPase MipZ MeaB PF03308.16 gi|240103002|ref|YP_002959311.1| - 0.0096 14.9 0.1 0.018 14.0 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|240103002|ref|YP_002959311.1| - 0.018 15.6 0.1 0.04 14.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|240103002|ref|YP_002959311.1| - 0.025 14.3 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|240103002|ref|YP_002959311.1| - 0.034 13.5 0.0 0.061 12.7 0.0 1.5 1 0 0 1 1 1 0 KaiC AAA_26 PF13500.6 gi|240103002|ref|YP_002959311.1| - 0.043 13.6 0.4 0.3 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|240103002|ref|YP_002959311.1| - 0.067 13.2 0.2 1.8 8.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|240103002|ref|YP_002959311.1| - 0.07 12.8 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|240103002|ref|YP_002959311.1| - 0.075 13.4 0.1 0.14 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain PhoH PF02562.16 gi|240103002|ref|YP_002959311.1| - 0.093 12.2 2.1 0.43 10.0 2.1 1.9 1 1 0 1 1 1 0 PhoH-like protein CLP1_P PF16575.5 gi|240103002|ref|YP_002959311.1| - 0.093 12.5 0.9 0.28 11.0 0.0 2.2 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NACHT PF05729.12 gi|240103002|ref|YP_002959311.1| - 0.12 12.3 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.17 gi|240103002|ref|YP_002959311.1| - 0.14 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein LpxK PF02606.14 gi|240103002|ref|YP_002959311.1| - 0.15 11.1 0.6 0.25 10.4 0.6 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase GTP_EFTU PF00009.27 gi|240103002|ref|YP_002959311.1| - 0.18 11.3 0.4 9.4 5.7 0.1 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain NB-ARC PF00931.22 gi|240103002|ref|YP_002959311.1| - 0.25 10.5 1.0 0.31 10.2 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain DUF1611 PF07755.11 gi|240103002|ref|YP_002959311.1| - 0.32 10.3 1.3 2.4 7.4 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain DUF2408 PF10303.9 gi|240103002|ref|YP_002959311.1| - 0.47 11.0 3.1 7 7.2 0.3 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2408) CAMSAP_CC1 PF17095.5 gi|240103002|ref|YP_002959311.1| - 1.7 8.5 6.5 1.5 8.8 0.4 2.3 2 0 0 2 2 2 0 Spectrin-binding region of Ca2+-Calmodulin FeS_assembly_P PF01883.19 gi|240103003|ref|YP_002959312.1| - 1.4e-06 28.3 0.2 2e-06 27.9 0.2 1.4 1 1 0 1 1 1 1 Iron-sulfur cluster assembly protein DNA_pol3_a_NI PF14480.6 gi|240103003|ref|YP_002959312.1| - 0.0015 18.5 0.0 0.0022 18.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III polC-type N-terminus I Xrn1_D3 PF18194.1 gi|240103003|ref|YP_002959312.1| - 0.049 13.7 0.0 0.082 13.0 0.0 1.3 1 0 0 1 1 1 0 Exoribonuclease 1 Domain-3 DUF3974 PF13120.6 gi|240103004|ref|YP_002959313.1| - 0.0078 16.3 0.8 0.37 10.9 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3974) MazE_antitoxin PF04014.18 gi|240103005|ref|YP_002959314.1| - 2.7e-12 46.3 0.8 5.9e-12 45.2 0.8 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 gi|240103005|ref|YP_002959314.1| - 0.036 13.9 0.1 0.054 13.3 0.1 1.3 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 DUF5486 PF17588.2 gi|240103005|ref|YP_002959314.1| - 0.045 13.6 0.1 0.079 12.9 0.1 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5486) WG_beta_rep PF14903.6 gi|240103005|ref|YP_002959314.1| - 0.14 12.4 0.8 0.39 11.0 0.2 2.1 2 1 0 2 2 2 0 WG containing repeat PIN PF01850.21 gi|240103006|ref|YP_002959315.1| - 1.2e-19 71.0 0.3 1.4e-19 70.7 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|240103006|ref|YP_002959315.1| - 0.1 13.1 0.6 0.22 12.0 0.2 1.7 2 0 0 2 2 2 0 PIN domain Hydrolase_4 PF12146.8 gi|240103007|ref|YP_002959316.1| - 3.8e-67 226.0 0.0 4.5e-67 225.8 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|240103007|ref|YP_002959316.1| - 1.5e-23 83.7 0.0 7.1e-19 68.4 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|240103007|ref|YP_002959316.1| - 2.3e-21 77.4 0.1 2.9e-21 77.1 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|240103007|ref|YP_002959316.1| - 3.3e-07 30.0 0.0 0.0013 18.2 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_5 PF12695.7 gi|240103007|ref|YP_002959316.1| - 4.8e-05 23.2 0.0 0.0063 16.3 0.0 2.4 2 1 0 2 2 2 1 Alpha/beta hydrolase family Ser_hydrolase PF06821.13 gi|240103007|ref|YP_002959316.1| - 0.00065 19.6 0.0 0.0026 17.6 0.0 1.8 2 0 0 2 2 2 1 Serine hydrolase Abhydrolase_2 PF02230.16 gi|240103007|ref|YP_002959316.1| - 0.00091 19.1 0.0 0.11 12.2 0.0 2.9 2 1 1 3 3 3 1 Phospholipase/Carboxylesterase Thioesterase PF00975.20 gi|240103007|ref|YP_002959316.1| - 0.0015 18.7 0.0 0.003 17.7 0.0 1.5 1 0 0 1 1 1 1 Thioesterase domain FSH1 PF03959.13 gi|240103007|ref|YP_002959316.1| - 0.0021 17.7 0.0 0.0064 16.2 0.0 1.7 1 1 0 1 1 1 1 Serine hydrolase (FSH1) AXE1 PF05448.12 gi|240103007|ref|YP_002959316.1| - 0.0028 16.4 0.0 0.008 14.9 0.0 1.7 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Esterase PF00756.20 gi|240103007|ref|YP_002959316.1| - 0.0031 17.2 0.0 0.0038 16.9 0.0 1.3 1 1 0 1 1 1 1 Putative esterase Abhydrolase_4 PF08386.10 gi|240103007|ref|YP_002959316.1| - 0.0058 16.7 0.0 0.015 15.4 0.0 1.7 1 0 0 1 1 1 1 TAP-like protein Peptidase_S15 PF02129.18 gi|240103007|ref|YP_002959316.1| - 0.011 15.3 0.0 0.2 11.2 0.0 2.4 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|240103007|ref|YP_002959316.1| - 0.055 13.0 0.0 0.24 10.9 0.0 1.9 2 0 0 2 2 2 0 Dienelactone hydrolase family UPF0227 PF05728.12 gi|240103007|ref|YP_002959316.1| - 0.089 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) BAAT_C PF08840.11 gi|240103007|ref|YP_002959316.1| - 0.18 11.7 0.0 1.2 9.0 0.0 1.9 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal S_4TM PF18159.1 gi|240103008|ref|YP_002959317.1| - 0.086 12.1 1.6 0.13 11.6 1.6 1.1 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain DUF202 PF02656.15 gi|240103008|ref|YP_002959317.1| - 0.32 11.5 3.0 0.62 10.6 3.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF202) Adenylsucc_synt PF00709.21 gi|240103009|ref|YP_002959318.1| - 6.4e-91 305.4 1.8 8.9e-45 153.4 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase AA_kinase PF00696.28 gi|240103009|ref|YP_002959318.1| - 0.00083 19.0 0.0 0.00097 18.8 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family Epimerase PF01370.21 gi|240103010|ref|YP_002959319.1| - 4.9e-62 209.5 0.0 5.7e-62 209.3 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|240103010|ref|YP_002959319.1| - 1.1e-59 202.5 0.0 1.8e-59 201.8 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|240103010|ref|YP_002959319.1| - 2.4e-21 76.0 0.0 3.1e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|240103010|ref|YP_002959319.1| - 8.2e-17 61.3 0.3 1.4e-15 57.3 0.3 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|240103010|ref|YP_002959319.1| - 2.5e-16 59.6 0.0 3.3e-16 59.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|240103010|ref|YP_002959319.1| - 2.5e-14 53.1 0.0 9e-11 41.4 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|240103010|ref|YP_002959319.1| - 1.4e-08 34.9 0.0 2.4e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|240103010|ref|YP_002959319.1| - 0.00028 20.5 0.1 0.0005 19.7 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|240103010|ref|YP_002959319.1| - 0.0027 17.2 0.1 0.012 15.0 0.1 2.0 1 1 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|240103010|ref|YP_002959319.1| - 0.0031 17.8 0.1 0.0052 17.0 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|240103010|ref|YP_002959319.1| - 0.023 14.9 0.1 0.047 13.9 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Shikimate_DH PF01488.20 gi|240103010|ref|YP_002959319.1| - 0.11 12.5 0.2 0.61 10.1 0.0 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 gi|240103010|ref|YP_002959319.1| - 0.14 11.7 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase DUF2341 PF10102.9 gi|240103011|ref|YP_002959320.1| - 9.4e-20 71.0 0.3 9.4e-20 71.0 0.3 2.9 4 0 0 4 4 4 1 Domain of unknown function (DUF2341) CBS PF00571.28 gi|240103012|ref|YP_002959321.1| - 3.5e-20 72.2 4.4 3e-12 46.8 0.2 2.3 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|240103012|ref|YP_002959321.1| - 4.1e-15 55.6 1.0 8.3e-15 54.6 0.8 1.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|240103012|ref|YP_002959321.1| - 2.1e-12 46.9 0.2 4.2e-12 45.9 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|240103012|ref|YP_002959321.1| - 1.3e-10 41.4 0.0 2.3e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|240103012|ref|YP_002959321.1| - 2.9e-05 24.4 0.1 6.1e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|240103012|ref|YP_002959321.1| - 0.00021 21.1 0.1 0.00039 20.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|240103012|ref|YP_002959321.1| - 0.00023 21.2 0.0 0.00056 20.0 0.0 1.6 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_37 PF13744.6 gi|240103012|ref|YP_002959321.1| - 0.0015 18.4 0.1 0.0032 17.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|240103012|ref|YP_002959321.1| - 0.05 13.2 1.4 0.8 9.3 0.1 3.0 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Prefoldin PF02996.17 gi|240103013|ref|YP_002959322.1| - 4.8e-28 97.5 0.8 7.2e-28 96.9 0.8 1.3 1 0 0 1 1 1 1 Prefoldin subunit phiKZ_IP PF12699.7 gi|240103013|ref|YP_002959322.1| - 0.0027 16.9 0.6 0.0097 15.1 0.1 1.8 2 0 0 2 2 2 1 phiKZ-like phage internal head proteins DUF5082 PF16888.5 gi|240103013|ref|YP_002959322.1| - 0.014 15.6 6.1 0.11 12.8 6.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) Prefoldin_2 PF01920.20 gi|240103013|ref|YP_002959322.1| - 0.018 15.0 9.3 1.2 9.2 0.2 2.2 2 0 0 2 2 2 0 Prefoldin subunit Prefoldin_3 PF13758.6 gi|240103013|ref|YP_002959322.1| - 0.022 14.8 0.1 0.091 12.8 0.1 2.0 1 1 0 1 1 1 0 Prefoldin subunit DHR-2 PF06920.13 gi|240103013|ref|YP_002959322.1| - 0.042 12.5 0.5 0.057 12.1 0.0 1.3 2 0 0 2 2 2 0 Dock homology region 2 NPV_P10 PF05531.12 gi|240103013|ref|YP_002959322.1| - 0.043 14.3 1.1 7.7 7.1 0.1 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein SlyX PF04102.12 gi|240103013|ref|YP_002959322.1| - 0.057 14.0 2.1 0.057 14.0 2.1 2.2 2 0 0 2 2 2 0 SlyX CREPT PF16566.5 gi|240103013|ref|YP_002959322.1| - 0.072 13.3 6.0 2.9 8.1 0.3 2.1 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour KxDL PF10241.9 gi|240103013|ref|YP_002959322.1| - 0.085 13.1 4.1 0.34 11.2 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein HAUS-augmin3 PF14932.6 gi|240103013|ref|YP_002959322.1| - 0.13 11.8 8.5 1.3 8.6 4.1 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 V-ATPase_C PF03223.15 gi|240103013|ref|YP_002959322.1| - 0.13 11.6 0.9 0.15 11.5 0.1 1.4 2 0 0 2 2 2 0 V-ATPase subunit C Com_YlbF PF06133.11 gi|240103013|ref|YP_002959322.1| - 0.19 12.3 9.3 0.057 14.0 2.8 2.1 2 0 0 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA Noelin-1 PF12308.8 gi|240103013|ref|YP_002959322.1| - 0.8 9.7 2.8 2.1 8.4 0.3 2.0 2 0 0 2 2 2 0 Neurogenesis glycoprotein TMF_TATA_bd PF12325.8 gi|240103013|ref|YP_002959322.1| - 0.98 9.7 9.5 6.3 7.1 3.1 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Spc7 PF08317.11 gi|240103013|ref|YP_002959322.1| - 1.6 7.5 10.1 3.3 6.5 0.8 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein FliD_N PF02465.18 gi|240103013|ref|YP_002959322.1| - 3 8.6 5.0 9.9 6.9 0.3 2.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus DivIC PF04977.15 gi|240103013|ref|YP_002959322.1| - 4.5 7.1 10.0 8 6.3 3.9 2.4 2 0 0 2 2 2 0 Septum formation initiator GrpE PF01025.19 gi|240103013|ref|YP_002959322.1| - 6.8 6.3 8.1 2.8 7.6 0.9 2.1 2 0 0 2 2 2 0 GrpE Spc24 PF08286.11 gi|240103013|ref|YP_002959322.1| - 8.7 6.6 10.3 3.2 8.0 1.0 2.6 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 Metallophos PF00149.28 gi|240103014|ref|YP_002959323.1| - 7.7e-11 42.9 0.0 9.6e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|240103014|ref|YP_002959323.1| - 1.9e-06 28.1 0.0 4.1e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Ribosomal_L41 PF05162.13 gi|240103015|ref|YP_002959324.1| - 0.0054 16.8 17.2 0.0054 16.8 17.2 2.7 1 1 1 2 2 2 1 Ribosomal protein L41 CN_hydrolase PF00795.22 gi|240103016|ref|YP_002959325.1| - 4e-58 196.8 0.0 4.9e-58 196.5 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Methyltransf_25 PF13649.6 gi|240103017|ref|YP_002959326.1| - 6.4e-07 30.0 0.0 9.9e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240103017|ref|YP_002959326.1| - 0.0021 17.9 0.0 0.0033 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PAC2 PF09754.9 gi|240103017|ref|YP_002959326.1| - 0.073 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 PAC2 family Methyltransf_31 PF13847.6 gi|240103017|ref|YP_002959326.1| - 0.16 11.7 0.0 0.29 10.9 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|240103017|ref|YP_002959326.1| - 0.21 11.1 0.0 0.33 10.5 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_33 PF10017.9 gi|240103017|ref|YP_002959326.1| - 0.22 10.6 0.0 0.31 10.2 0.0 1.2 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent DAO PF01266.24 gi|240103018|ref|YP_002959327.1| - 1.8e-72 244.9 0.0 2.1e-72 244.7 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|240103018|ref|YP_002959327.1| - 1.6e-06 28.2 0.1 4.3e-06 26.9 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|240103018|ref|YP_002959327.1| - 9.6e-06 24.9 0.3 4.6e-05 22.7 0.3 1.9 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|240103018|ref|YP_002959327.1| - 1.8e-05 25.2 0.4 3.5e-05 24.3 0.4 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|240103018|ref|YP_002959327.1| - 3.7e-05 23.1 0.0 7.7e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|240103018|ref|YP_002959327.1| - 0.00021 20.6 0.1 0.015 14.6 0.0 2.2 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|240103018|ref|YP_002959327.1| - 0.001 18.4 0.3 0.0018 17.6 0.3 1.4 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|240103018|ref|YP_002959327.1| - 0.0017 18.0 0.1 0.0027 17.3 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|240103018|ref|YP_002959327.1| - 0.0038 17.6 0.0 0.0075 16.7 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 gi|240103018|ref|YP_002959327.1| - 0.0045 16.3 2.2 0.015 14.5 0.8 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|240103018|ref|YP_002959327.1| - 0.0048 17.2 1.0 0.0091 16.2 1.0 1.4 1 0 0 1 1 1 1 TrkA-N domain HI0933_like PF03486.14 gi|240103018|ref|YP_002959327.1| - 0.0066 15.2 0.6 0.032 12.9 0.2 1.9 2 0 0 2 2 2 1 HI0933-like protein 3HCDH_N PF02737.18 gi|240103018|ref|YP_002959327.1| - 0.0073 16.2 0.1 0.013 15.4 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|240103018|ref|YP_002959327.1| - 0.019 14.3 0.0 0.075 12.3 0.0 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|240103018|ref|YP_002959327.1| - 0.023 15.3 0.4 0.052 14.1 0.4 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|240103018|ref|YP_002959327.1| - 0.03 13.9 0.2 0.053 13.1 0.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|240103018|ref|YP_002959327.1| - 0.037 12.9 2.2 0.076 11.8 2.2 1.8 1 1 0 1 1 1 0 Tryptophan halogenase NAD_Gly3P_dh_N PF01210.23 gi|240103018|ref|YP_002959327.1| - 0.085 12.8 0.4 0.19 11.7 0.4 1.7 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.22 gi|240103018|ref|YP_002959327.1| - 0.094 11.8 1.3 0.46 9.5 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|240103018|ref|YP_002959327.1| - 0.095 12.0 1.1 0.59 9.4 0.6 2.1 2 1 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|240103018|ref|YP_002959327.1| - 0.12 12.4 0.1 0.22 11.5 0.1 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding DUF1188 PF06690.11 gi|240103018|ref|YP_002959327.1| - 0.12 11.9 0.0 0.32 10.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) Sacchrp_dh_NADP PF03435.18 gi|240103018|ref|YP_002959327.1| - 0.27 11.5 1.0 0.67 10.2 0.8 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_2 PF07992.14 gi|240103019|ref|YP_002959328.1| - 1.2e-19 70.7 0.5 5.8e-10 38.9 0.1 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|240103019|ref|YP_002959328.1| - 1.6e-14 53.7 0.0 3.1e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SO_alpha_A3 PF17806.1 gi|240103019|ref|YP_002959328.1| - 4.1e-09 36.6 0.0 9.5e-09 35.5 0.0 1.6 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Thi4 PF01946.17 gi|240103019|ref|YP_002959328.1| - 0.0017 17.7 2.5 0.0046 16.2 2.1 2.0 2 1 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|240103019|ref|YP_002959328.1| - 1 8.6 2.6 14 4.8 1.9 2.5 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase SSF PF00474.17 gi|240103020|ref|YP_002959329.1| - 1.7e-87 294.0 26.2 2.1e-87 293.6 26.2 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family Defensin_big PF14862.6 gi|240103020|ref|YP_002959329.1| - 0.087 13.2 0.1 0.25 11.7 0.1 1.8 1 0 0 1 1 1 0 Big defensin Ceramidase PF05875.12 gi|240103020|ref|YP_002959329.1| - 0.29 10.5 4.9 0.11 11.9 1.3 2.1 2 0 0 2 2 2 0 Ceramidase ATPgrasp_Ter PF15632.6 gi|240103022|ref|YP_002959331.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon AAA PF00004.29 gi|240103023|ref|YP_002959332.1| - 1.8e-37 128.7 0.0 2.8e-37 128.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Vps4_C PF09336.10 gi|240103023|ref|YP_002959332.1| - 6.7e-09 35.6 0.0 2.4e-08 33.9 0.0 2.0 1 0 0 1 1 1 1 Vps4 C terminal oligomerisation domain RuvB_N PF05496.12 gi|240103023|ref|YP_002959332.1| - 6.6e-06 26.0 0.0 1.1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|240103023|ref|YP_002959332.1| - 2.1e-05 24.8 0.2 0.11 12.7 0.1 3.0 1 1 2 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|240103023|ref|YP_002959332.1| - 9.2e-05 22.9 0.2 0.012 16.0 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_5 PF07728.14 gi|240103023|ref|YP_002959332.1| - 0.00042 20.3 0.2 0.0035 17.4 0.2 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|240103023|ref|YP_002959332.1| - 0.0008 19.6 0.0 0.0014 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) ATPase PF06745.13 gi|240103023|ref|YP_002959332.1| - 0.00093 18.6 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 2 KaiC DUF815 PF05673.13 gi|240103023|ref|YP_002959332.1| - 0.0019 17.4 0.0 0.0034 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|240103023|ref|YP_002959332.1| - 0.0025 17.1 0.2 0.0067 15.7 0.1 1.6 1 1 1 2 2 2 1 TIP49 P-loop domain AAA_lid_3 PF17862.1 gi|240103023|ref|YP_002959332.1| - 0.0076 16.0 0.2 0.023 14.5 0.2 1.9 1 1 0 1 1 1 1 AAA+ lid domain Mg_chelatase PF01078.21 gi|240103023|ref|YP_002959332.1| - 0.011 15.2 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|240103023|ref|YP_002959332.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|240103023|ref|YP_002959332.1| - 0.011 15.6 0.0 0.026 14.4 0.0 1.6 1 1 0 1 1 1 0 Bacterial dnaA protein NTPase_1 PF03266.15 gi|240103023|ref|YP_002959332.1| - 0.019 14.9 0.1 7.9 6.4 0.0 2.3 1 1 1 2 2 2 0 NTPase AAA_18 PF13238.6 gi|240103023|ref|YP_002959332.1| - 0.025 15.1 0.0 0.047 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|240103023|ref|YP_002959332.1| - 0.031 14.4 0.0 0.076 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|240103023|ref|YP_002959332.1| - 0.033 13.9 0.0 0.069 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AFG1_ATPase PF03969.16 gi|240103023|ref|YP_002959332.1| - 0.038 12.9 0.0 0.055 12.4 0.0 1.3 1 0 0 1 1 1 0 AFG1-like ATPase PhoH PF02562.16 gi|240103023|ref|YP_002959332.1| - 0.04 13.4 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_14 PF13173.6 gi|240103023|ref|YP_002959332.1| - 0.05 13.6 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|240103023|ref|YP_002959332.1| - 0.054 13.1 0.7 0.19 11.3 0.1 2.2 3 0 0 3 3 3 0 AAA domain PP1_inhibitor PF05361.12 gi|240103023|ref|YP_002959332.1| - 0.071 13.1 0.0 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 PKC-activated protein phosphatase-1 inhibitor DUF2075 PF09848.9 gi|240103023|ref|YP_002959332.1| - 0.093 12.0 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF2007 PF09413.10 gi|240103023|ref|YP_002959332.1| - 0.14 12.4 0.1 0.39 10.9 0.1 1.8 1 0 0 1 1 1 0 Putative prokaryotic signal transducing protein RNA_helicase PF00910.22 gi|240103023|ref|YP_002959332.1| - 0.16 12.3 0.0 0.35 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Snf7 PF03357.21 gi|240103024|ref|YP_002959333.1| - 0.009 15.6 11.9 0.014 15.0 11.9 1.4 1 1 0 1 1 1 1 Snf7 PEGA PF08308.11 gi|240103025|ref|YP_002959334.1| - 1.3e-97 319.7 29.4 5.7e-21 74.2 1.6 5.5 5 0 0 5 5 5 5 PEGA domain Pkinase PF00069.25 gi|240103025|ref|YP_002959334.1| - 9.7e-46 156.3 0.0 1.8e-45 155.4 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|240103025|ref|YP_002959334.1| - 1.6e-29 103.0 0.0 3.1e-29 102.0 0.0 1.5 1 1 0 1 1 1 1 Protein tyrosine kinase CarboxypepD_reg PF13620.6 gi|240103025|ref|YP_002959334.1| - 8.8e-20 70.8 22.0 0.00042 20.5 0.1 6.1 6 0 0 6 6 5 5 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|240103025|ref|YP_002959334.1| - 5.7e-08 32.7 15.8 0.056 13.4 0.3 6.4 3 2 2 5 5 5 3 CarboxypepD_reg-like domain DUF2846 PF11008.8 gi|240103025|ref|YP_002959334.1| - 4e-06 26.8 1.8 0.25 11.4 0.0 5.0 6 0 0 6 6 5 1 Protein of unknown function (DUF2846) BetaGal_dom4_5 PF13364.6 gi|240103025|ref|YP_002959334.1| - 7.5e-06 26.5 0.8 6.1 7.5 0.0 5.1 1 1 4 5 5 5 1 Beta-galactosidase jelly roll domain Fn3-like PF14310.6 gi|240103025|ref|YP_002959334.1| - 2.4e-05 24.4 0.1 6.1 7.0 0.0 5.3 5 1 0 5 5 5 1 Fibronectin type III-like domain ASH PF15780.5 gi|240103025|ref|YP_002959334.1| - 4.2e-05 23.7 0.1 3.8 7.8 0.0 4.5 5 0 0 5 5 4 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF1533 PF07550.11 gi|240103025|ref|YP_002959334.1| - 0.00038 20.3 3.3 1 9.3 0.2 4.6 4 0 0 4 4 4 1 Protein of unknown function (DUF1533) Kinase-like PF14531.6 gi|240103025|ref|YP_002959334.1| - 0.0004 19.8 0.0 0.005 16.2 0.0 2.2 2 0 0 2 2 2 1 Kinase-like fn3_3 PF14686.6 gi|240103025|ref|YP_002959334.1| - 0.0013 18.4 7.8 3.4 7.5 0.1 5.1 5 0 0 5 5 5 2 Polysaccharide lyase family 4, domain II APH PF01636.23 gi|240103025|ref|YP_002959334.1| - 0.016 15.1 0.1 0.037 13.9 0.0 1.7 2 0 0 2 2 2 0 Phosphotransferase enzyme family Kdo PF06293.14 gi|240103025|ref|YP_002959334.1| - 0.049 13.0 0.1 0.12 11.7 0.0 1.6 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family MG2 PF01835.19 gi|240103025|ref|YP_002959334.1| - 0.099 13.1 1.1 33 5.0 0.0 3.7 4 1 1 5 5 3 0 MG2 domain DUF4446 PF14584.6 gi|240103025|ref|YP_002959334.1| - 0.12 12.4 1.4 0.25 11.3 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) FTA2 PF13095.6 gi|240103025|ref|YP_002959334.1| - 0.13 11.9 0.0 4.8 6.7 0.0 2.5 2 0 0 2 2 2 0 Kinetochore Sim4 complex subunit FTA2 PapC_N PF13954.6 gi|240103025|ref|YP_002959334.1| - 0.15 12.1 0.0 46 4.0 0.0 4.3 5 0 0 5 5 5 0 PapC N-terminal domain BAG PF02179.16 gi|240103025|ref|YP_002959334.1| - 0.18 12.2 5.7 0.27 11.7 3.2 2.3 2 0 0 2 2 2 0 BAG domain Phage_GP20 PF06810.11 gi|240103025|ref|YP_002959334.1| - 0.42 10.4 8.2 0.73 9.6 7.7 1.6 1 1 0 1 1 1 0 Phage minor structural protein GP20 Mucin PF01456.17 gi|240103025|ref|YP_002959334.1| - 2.5 8.1 25.6 0.48 10.4 21.4 1.9 2 0 0 2 2 2 0 Mucin-like glycoprotein Baculo_PEP_C PF04513.12 gi|240103025|ref|YP_002959334.1| - 2.6 8.1 7.9 6.6 6.8 0.8 2.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus APG6_N PF17675.1 gi|240103025|ref|YP_002959334.1| - 2.9 8.4 10.5 6.1 7.4 10.5 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region PEGA PF08308.11 gi|240103026|ref|YP_002959335.1| - 1.5e-18 66.4 1.2 3.1e-18 65.4 1.2 1.6 1 0 0 1 1 1 1 PEGA domain DUF5122 PF17164.4 gi|240103026|ref|YP_002959335.1| - 1.6e-11 44.2 31.9 0.033 14.5 1.4 7.7 7 0 0 7 7 7 4 Domain of unknown function (DUF5122) beta-propeller AbrB-like PF14250.6 gi|240103026|ref|YP_002959335.1| - 4.3e-05 23.5 1.8 8.7 6.5 0.0 5.5 2 1 4 6 6 6 1 AbrB-like transcriptional regulator CarboxypepD_reg PF13620.6 gi|240103026|ref|YP_002959335.1| - 0.00014 22.1 0.1 0.00083 19.6 0.1 2.3 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain BNR_2 PF13088.6 gi|240103026|ref|YP_002959335.1| - 0.00021 20.7 0.0 1.5 8.1 0.0 4.2 2 1 2 4 4 4 1 BNR repeat-like domain WD40 PF00400.32 gi|240103026|ref|YP_002959335.1| - 0.00029 21.6 7.6 1.3 10.0 0.1 6.5 7 0 0 7 7 7 1 WD domain, G-beta repeat Kelch_5 PF13854.6 gi|240103026|ref|YP_002959335.1| - 0.0016 18.4 18.0 1.3 9.1 0.1 7.0 7 1 0 7 7 7 2 Kelch motif RHS PF03527.14 gi|240103026|ref|YP_002959335.1| - 0.021 14.5 11.9 31 4.4 0.1 6.1 6 0 0 6 6 6 0 RHS protein PQQ PF01011.21 gi|240103026|ref|YP_002959335.1| - 0.032 14.2 19.0 8.3 6.5 0.0 7.0 7 0 0 7 7 7 0 PQQ enzyme repeat Kelch_4 PF13418.6 gi|240103026|ref|YP_002959335.1| - 0.055 13.5 25.4 0.095 12.7 1.0 5.6 5 2 1 6 6 6 0 Galactose oxidase, central domain Kelch_3 PF13415.6 gi|240103026|ref|YP_002959335.1| - 0.28 11.5 15.1 2.5 8.5 0.4 5.1 5 0 0 5 5 5 0 Galactose oxidase, central domain Kelch_6 PF13964.6 gi|240103026|ref|YP_002959335.1| - 0.49 10.8 14.2 1.6 9.1 0.1 6.2 7 1 1 8 8 8 0 Kelch motif Flavi_NS2B PF01002.19 gi|240103026|ref|YP_002959335.1| - 1 9.2 3.4 25 4.8 0.2 3.7 2 2 1 4 4 4 0 Flavivirus non-structural protein NS2B VCBS PF13517.6 gi|240103026|ref|YP_002959335.1| - 2.8 8.6 28.0 7.5 7.2 0.9 5.7 2 1 3 5 5 5 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella NHL PF01436.21 gi|240103026|ref|YP_002959335.1| - 3.9 7.7 31.5 30 4.9 0.2 7.1 7 0 0 7 7 7 0 NHL repeat PEGA PF08308.11 gi|240103027|ref|YP_002959336.1| - 1.3e-138 451.1 68.1 8.7e-23 80.0 1.1 10.0 7 3 3 10 10 10 7 PEGA domain CarboxypepD_reg PF13620.6 gi|240103027|ref|YP_002959336.1| - 6.1e-28 96.9 33.6 5.6e-05 23.3 0.3 9.8 9 1 0 9 9 9 7 Carboxypeptidase regulatory-like domain DUF2341 PF10102.9 gi|240103027|ref|YP_002959336.1| - 1.8e-26 92.5 0.5 8.2e-26 90.4 0.5 2.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) PQQ_2 PF13360.6 gi|240103027|ref|YP_002959336.1| - 4.2e-23 82.2 35.4 4.4e-10 39.5 4.0 5.4 2 2 2 5 5 5 5 PQQ-like domain Laminin_G_3 PF13385.6 gi|240103027|ref|YP_002959336.1| - 1.5e-18 67.4 0.1 1.5e-18 67.4 0.1 10.9 8 3 2 12 12 12 1 Concanavalin A-like lectin/glucanases superfamily CarbopepD_reg_2 PF13715.6 gi|240103027|ref|YP_002959336.1| - 4.9e-11 42.5 30.9 0.053 13.5 0.2 8.4 2 2 5 7 7 7 4 CarboxypepD_reg-like domain Pentaxin PF00354.17 gi|240103027|ref|YP_002959336.1| - 7.1e-09 35.6 0.1 1.9e-08 34.2 0.1 1.7 1 0 0 1 1 1 1 Pentaxin family DUF5122 PF17164.4 gi|240103027|ref|YP_002959336.1| - 1.3e-08 34.9 56.7 0.00049 20.3 0.4 11.3 11 0 0 11 11 11 4 Domain of unknown function (DUF5122) beta-propeller WD40 PF00400.32 gi|240103027|ref|YP_002959336.1| - 8.7e-08 32.7 18.4 0.11 13.4 0.4 9.7 10 0 0 10 10 10 2 WD domain, G-beta repeat DUF4398 PF14346.6 gi|240103027|ref|YP_002959336.1| - 1.9e-07 31.6 71.8 0.00065 20.3 11.9 8.8 5 2 4 9 9 9 4 Domain of unknown function (DUF4398) PQQ PF01011.21 gi|240103027|ref|YP_002959336.1| - 4.9e-07 29.4 59.5 7.9e-05 22.4 0.1 13.2 14 1 1 15 15 13 3 PQQ enzyme repeat ANAPC4_WD40 PF12894.7 gi|240103027|ref|YP_002959336.1| - 3.7e-06 27.1 0.0 0.38 11.1 0.0 5.5 3 2 2 5 5 5 1 Anaphase-promoting complex subunit 4 WD40 domain fn3_5 PF06280.12 gi|240103027|ref|YP_002959336.1| - 9e-06 26.4 18.7 1.4 9.6 0.1 7.8 4 2 1 7 7 7 1 Fn3-like domain PQQ_3 PF13570.6 gi|240103027|ref|YP_002959336.1| - 0.00023 21.5 88.7 0.085 13.4 2.5 14.8 16 0 0 16 16 14 4 PQQ-like domain ASH PF15780.5 gi|240103027|ref|YP_002959336.1| - 0.0009 19.4 9.0 22 5.4 0.2 7.0 8 0 0 8 8 7 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin HEPN PF05168.14 gi|240103027|ref|YP_002959336.1| - 0.0053 16.9 46.2 0.058 13.5 4.1 8.4 8 1 0 8 8 8 2 HEPN domain Laminin_G_1 PF00054.23 gi|240103027|ref|YP_002959336.1| - 0.0082 16.4 0.0 0.055 13.7 0.0 2.6 1 0 0 1 1 1 1 Laminin G domain MG2 PF01835.19 gi|240103027|ref|YP_002959336.1| - 0.019 15.4 0.9 25 5.4 0.1 4.6 4 0 0 4 4 4 0 MG2 domain Thioredoxin_13 PF18401.1 gi|240103027|ref|YP_002959336.1| - 0.032 14.2 3.2 0.52 10.2 0.1 3.7 4 0 0 4 4 3 0 Thioredoxin-like domain TonB_2 PF13103.6 gi|240103027|ref|YP_002959336.1| - 0.078 13.2 1.0 5.4 7.3 0.0 4.2 3 1 0 4 4 4 0 TonB C terminal Flu_M1_C PF08289.11 gi|240103027|ref|YP_002959336.1| - 0.13 12.5 2.4 4.9 7.4 0.1 3.4 3 0 0 3 3 2 0 Influenza Matrix protein (M1) C-terminal domain BORCS8 PF10167.9 gi|240103027|ref|YP_002959336.1| - 0.41 10.6 9.3 2.6 8.0 0.0 5.0 3 2 2 5 5 5 0 BLOC-1-related complex sub-unit 8 Kelch_4 PF13418.6 gi|240103027|ref|YP_002959336.1| - 0.78 9.8 9.9 3.6 7.7 2.5 4.2 3 0 0 3 3 3 0 Galactose oxidase, central domain DUF4878 PF12870.7 gi|240103027|ref|YP_002959336.1| - 1.2 9.4 12.6 1.2 9.4 2.0 4.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4878) DUF1771 PF08590.10 gi|240103027|ref|YP_002959336.1| - 9.1 6.7 43.9 0.032 14.6 4.0 6.1 6 0 0 6 6 6 0 Domain of unknown function (DUF1771) AAA PF00004.29 gi|240103029|ref|YP_002959338.1| - 2.4e-39 134.8 0.0 5e-39 133.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Vps4_C PF09336.10 gi|240103029|ref|YP_002959338.1| - 1.5e-08 34.5 0.0 6.1e-08 32.5 0.0 2.1 1 0 0 1 1 1 1 Vps4 C terminal oligomerisation domain AAA_lid_3 PF17862.1 gi|240103029|ref|YP_002959338.1| - 1.6e-05 24.6 0.2 6.1e-05 22.7 0.2 2.1 1 1 0 1 1 1 1 AAA+ lid domain AAA_16 PF13191.6 gi|240103029|ref|YP_002959338.1| - 1.8e-05 25.2 0.1 0.0032 17.9 0.0 2.6 2 1 1 3 3 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|240103029|ref|YP_002959338.1| - 1.9e-05 24.4 0.0 3.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|240103029|ref|YP_002959338.1| - 6.2e-05 23.3 0.4 0.092 13.0 0.1 2.9 1 1 1 2 2 2 2 AAA domain AAA_2 PF07724.14 gi|240103029|ref|YP_002959338.1| - 6.4e-05 23.1 0.0 0.00014 22.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|240103029|ref|YP_002959338.1| - 9.3e-05 22.4 0.2 0.0011 18.9 0.2 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|240103029|ref|YP_002959338.1| - 0.0011 18.3 0.0 0.0018 17.5 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|240103029|ref|YP_002959338.1| - 0.0019 17.9 0.0 0.0034 17.1 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|240103029|ref|YP_002959338.1| - 0.0032 18.0 0.0 0.0096 16.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|240103029|ref|YP_002959338.1| - 0.0099 15.3 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI A_thal_3526 PF09713.10 gi|240103029|ref|YP_002959338.1| - 0.017 15.4 0.0 0.086 13.1 0.0 2.2 2 0 0 2 2 2 0 Plant protein 1589 of unknown function (A_thal_3526) ATPase PF06745.13 gi|240103029|ref|YP_002959338.1| - 0.03 13.7 0.2 1.8 7.9 0.0 2.3 2 0 0 2 2 2 0 KaiC AAA_7 PF12775.7 gi|240103029|ref|YP_002959338.1| - 0.031 13.8 0.0 0.082 12.4 0.0 1.9 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|240103029|ref|YP_002959338.1| - 0.036 14.2 0.0 0.069 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|240103029|ref|YP_002959338.1| - 0.04 13.1 0.2 0.52 9.5 0.0 2.5 2 1 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.6 gi|240103029|ref|YP_002959338.1| - 0.042 13.6 0.0 0.12 12.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|240103029|ref|YP_002959338.1| - 0.043 13.3 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_14 PF13173.6 gi|240103029|ref|YP_002959338.1| - 0.044 13.8 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|240103029|ref|YP_002959338.1| - 0.077 12.6 0.7 0.27 10.8 0.4 2.0 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|240103029|ref|YP_002959338.1| - 0.091 13.2 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_11 PF13086.6 gi|240103029|ref|YP_002959338.1| - 0.48 10.2 2.0 1.5 8.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain Myb_DNA-bind_4 PF13837.6 gi|240103029|ref|YP_002959338.1| - 1.3 9.4 5.5 0.48 10.8 1.2 2.4 2 1 1 3 3 2 0 Myb/SANT-like DNA-binding domain Pentapeptide PF00805.22 gi|240103030|ref|YP_002959339.1| - 1.6e-43 145.9 28.3 4.4e-12 45.4 1.9 4.6 1 1 4 5 5 5 5 Pentapeptide repeats (8 copies) Ion_trans_2 PF07885.16 gi|240103030|ref|YP_002959339.1| - 4e-14 52.3 10.9 7.6e-14 51.4 10.9 1.5 1 0 0 1 1 1 1 Ion channel Pentapeptide_3 PF13576.6 gi|240103030|ref|YP_002959339.1| - 2.1e-13 50.2 0.0 0.00063 19.8 0.0 4.3 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.6 gi|240103030|ref|YP_002959339.1| - 5e-13 49.0 0.0 1.1e-05 25.4 0.0 2.5 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) TPR_11 PF13414.6 gi|240103030|ref|YP_002959339.1| - 0.0078 15.9 0.0 0.023 14.3 0.0 1.9 1 0 0 1 1 1 1 TPR repeat Peptidase_A24 PF01478.18 gi|240103030|ref|YP_002959339.1| - 0.046 14.1 3.7 0.082 13.3 3.7 1.4 1 0 0 1 1 1 0 Type IV leader peptidase family TPR_2 PF07719.17 gi|240103030|ref|YP_002959339.1| - 0.2 11.8 1.0 0.94 9.7 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat Pkinase PF00069.25 gi|240103031|ref|YP_002959340.1| - 2e-46 158.5 0.0 3e-46 157.9 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|240103031|ref|YP_002959340.1| - 2.6e-31 108.9 0.0 4.1e-31 108.2 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase DUF5122 PF17164.4 gi|240103031|ref|YP_002959340.1| - 1.1e-11 44.9 23.9 0.0062 16.8 0.0 7.9 8 0 0 8 8 7 4 Domain of unknown function (DUF5122) beta-propeller BNR_2 PF13088.6 gi|240103031|ref|YP_002959340.1| - 7.1e-06 25.5 0.1 0.013 14.8 0.2 3.0 2 1 1 3 3 3 2 BNR repeat-like domain Kinase-like PF14531.6 gi|240103031|ref|YP_002959340.1| - 5.8e-05 22.6 0.0 0.00056 19.3 0.0 2.0 2 0 0 2 2 2 1 Kinase-like APH PF01636.23 gi|240103031|ref|YP_002959340.1| - 0.0046 16.9 0.0 0.0088 16.0 0.0 1.5 1 0 0 1 1 1 1 Phosphotransferase enzyme family ABC1 PF03109.16 gi|240103031|ref|YP_002959340.1| - 0.019 15.1 0.0 0.053 13.7 0.0 1.7 1 0 0 1 1 1 0 ABC1 family Kelch_3 PF13415.6 gi|240103031|ref|YP_002959340.1| - 0.059 13.7 5.4 33 4.9 0.0 4.4 5 0 0 5 5 5 0 Galactose oxidase, central domain RIO1 PF01163.22 gi|240103031|ref|YP_002959340.1| - 0.14 11.7 0.1 0.59 9.7 0.0 1.9 2 0 0 2 2 2 0 RIO1 family PQQ PF01011.21 gi|240103031|ref|YP_002959340.1| - 0.15 12.1 14.4 10 6.3 0.1 6.4 6 0 0 6 6 6 0 PQQ enzyme repeat Lipoprotein_17 PF04200.12 gi|240103031|ref|YP_002959340.1| - 0.16 12.3 4.2 0.42 11.0 4.2 1.7 1 0 0 1 1 1 0 Lipoprotein associated domain Glyco_tranf_2_4 PF13704.6 gi|240103031|ref|YP_002959340.1| - 0.16 12.5 0.6 0.51 10.9 0.1 2.0 2 0 0 2 2 2 0 Glycosyl transferase family 2 NHL PF01436.21 gi|240103031|ref|YP_002959340.1| - 0.94 9.6 21.5 11 6.3 0.1 7.0 7 0 0 7 7 7 0 NHL repeat DUF2606 PF10794.9 gi|240103031|ref|YP_002959340.1| - 6 6.6 12.8 24 4.7 0.2 5.1 5 1 1 6 6 6 0 Protein of unknown function (DUF2606) HATPase_c_4 PF13749.6 gi|240103032|ref|YP_002959341.1| - 2e-22 79.1 0.0 4.5e-22 78.0 0.0 1.6 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal HTH_DeoR PF08220.12 gi|240103032|ref|YP_002959341.1| - 1.5e-06 27.9 0.0 3.4e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain DUF5122 PF17164.4 gi|240103032|ref|YP_002959341.1| - 1.1e-05 25.6 11.7 1.2 9.4 0.4 4.8 4 0 0 4 4 4 3 Domain of unknown function (DUF5122) beta-propeller TrmB PF01978.19 gi|240103032|ref|YP_002959341.1| - 0.0011 18.9 0.5 0.0025 17.7 0.5 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB NHL PF01436.21 gi|240103032|ref|YP_002959341.1| - 0.0029 17.6 5.2 14 6.0 0.0 4.7 4 0 0 4 4 4 1 NHL repeat Phage_rep_O PF04492.13 gi|240103032|ref|YP_002959341.1| - 0.0031 18.1 0.1 0.42 11.2 0.0 3.3 3 0 0 3 3 3 1 Bacteriophage replication protein O HTH_24 PF13412.6 gi|240103032|ref|YP_002959341.1| - 0.0036 16.8 0.0 0.0088 15.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding SpoIIID PF12116.8 gi|240103032|ref|YP_002959341.1| - 0.0072 16.4 0.1 0.088 12.9 0.0 2.3 2 0 0 2 2 2 1 Stage III sporulation protein D SGL PF08450.12 gi|240103032|ref|YP_002959341.1| - 0.04 13.5 2.1 0.29 10.7 1.9 2.3 1 1 1 2 2 2 0 SMP-30/Gluconolactonase/LRE-like region DUF977 PF06163.11 gi|240103032|ref|YP_002959341.1| - 0.049 13.6 0.1 0.16 12.0 0.1 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_Crp_2 PF13545.6 gi|240103032|ref|YP_002959341.1| - 0.073 13.1 1.2 0.16 12.0 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GP88 PF17338.2 gi|240103032|ref|YP_002959341.1| - 0.087 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Gene product 88 pXO2-72 PF17443.2 gi|240103032|ref|YP_002959341.1| - 0.23 11.7 1.4 10 6.4 0.0 3.4 4 0 0 4 4 3 0 Uncharacterized protein pXO2-72 TIR_2 PF13676.6 gi|240103033|ref|YP_002959342.1| - 5.3e-11 43.2 0.0 1e-10 42.2 0.0 1.5 1 0 0 1 1 1 1 TIR domain ATPase_2 PF01637.18 gi|240103034|ref|YP_002959343.1| - 7.3e-28 98.1 2.9 2.6e-27 96.2 0.3 2.7 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|240103034|ref|YP_002959343.1| - 1.4e-23 83.2 2.0 2.4e-23 82.4 0.9 2.0 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function AAA_22 PF13401.6 gi|240103034|ref|YP_002959343.1| - 3.2e-10 40.4 0.3 8.4e-10 39.1 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|240103034|ref|YP_002959343.1| - 8.9e-09 35.5 0.0 2.8e-08 33.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240103034|ref|YP_002959343.1| - 5.7e-06 26.8 1.8 0.0004 20.8 0.1 2.9 2 1 1 3 3 3 1 AAA ATPase domain DUF4143 PF13635.6 gi|240103034|ref|YP_002959343.1| - 0.0007 19.7 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) HTH_5 PF01022.20 gi|240103034|ref|YP_002959343.1| - 0.0043 16.9 0.0 0.0094 15.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TniB PF05621.11 gi|240103034|ref|YP_002959343.1| - 0.096 12.1 0.1 0.47 9.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein ATPase_2 PF01637.18 gi|240103035|ref|YP_002959344.1| - 2e-13 50.8 0.2 3.7e-13 49.9 0.2 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|240103035|ref|YP_002959344.1| - 1.8e-07 31.3 0.3 0.018 15.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|240103035|ref|YP_002959344.1| - 9.5e-07 29.3 0.1 2.7e-06 27.9 0.1 1.9 2 0 0 2 2 1 1 AAA ATPase domain HTH_24 PF13412.6 gi|240103035|ref|YP_002959344.1| - 2e-06 27.2 0.2 6.6e-06 25.6 0.2 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AAA_22 PF13401.6 gi|240103035|ref|YP_002959344.1| - 5.2e-06 26.8 0.0 1.5e-05 25.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain Mrr_cat PF04471.12 gi|240103035|ref|YP_002959344.1| - 5.7e-06 26.3 0.0 1.3e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease HTH_20 PF12840.7 gi|240103035|ref|YP_002959344.1| - 1.2e-05 25.2 0.1 6.6e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|240103035|ref|YP_002959344.1| - 8.4e-05 22.4 0.1 0.00022 21.0 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|240103035|ref|YP_002959344.1| - 0.0004 20.2 0.0 0.0021 17.9 0.0 2.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 gi|240103035|ref|YP_002959344.1| - 0.00082 18.8 0.6 0.0033 16.9 0.1 2.3 3 0 0 3 3 3 1 Sigma-70, region 4 DUF4423 PF14394.6 gi|240103035|ref|YP_002959344.1| - 0.005 16.6 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_IclR PF09339.10 gi|240103035|ref|YP_002959344.1| - 0.0054 16.5 0.0 0.019 14.8 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain TniB PF05621.11 gi|240103035|ref|YP_002959344.1| - 0.01 15.3 0.2 0.19 11.1 0.0 2.5 2 0 0 2 2 2 0 Bacterial TniB protein HTH_45 PF14947.6 gi|240103035|ref|YP_002959344.1| - 0.013 15.5 0.1 0.034 14.1 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix Sigma70_r4_2 PF08281.12 gi|240103035|ref|YP_002959344.1| - 0.013 15.2 0.7 0.041 13.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|240103035|ref|YP_002959344.1| - 0.027 14.4 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|240103035|ref|YP_002959344.1| - 0.068 13.7 0.0 0.25 11.9 0.0 2.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|240103035|ref|YP_002959344.1| - 0.11 12.5 0.0 0.4 10.7 0.1 1.9 2 0 0 2 2 2 0 MarR family HTH_38 PF13936.6 gi|240103035|ref|YP_002959344.1| - 0.14 12.0 0.1 0.39 10.5 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Pkinase PF00069.25 gi|240103036|ref|YP_002959345.1| - 2.7e-48 164.6 0.0 3.7e-48 164.2 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|240103036|ref|YP_002959345.1| - 2.4e-33 115.5 0.0 3.4e-33 115.0 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase ABC1 PF03109.16 gi|240103036|ref|YP_002959345.1| - 5.6e-05 23.3 0.0 0.00036 20.7 0.0 2.1 2 0 0 2 2 2 1 ABC1 family APH PF01636.23 gi|240103036|ref|YP_002959345.1| - 0.0082 16.1 0.2 0.097 12.6 0.0 2.5 2 1 1 3 3 3 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|240103036|ref|YP_002959345.1| - 0.044 13.4 0.1 1.4 8.4 0.0 2.8 2 1 1 3 3 3 0 RIO1 family PP2C PF00481.21 gi|240103037|ref|YP_002959346.1| - 2.9e-21 76.3 1.4 1.3e-19 70.9 0.0 3.1 3 1 0 3 3 3 1 Protein phosphatase 2C PP2C_2 PF13672.6 gi|240103037|ref|YP_002959346.1| - 2e-19 70.1 0.1 4.3e-18 65.7 0.0 2.5 3 0 0 3 3 3 1 Protein phosphatase 2C SpoIIE PF07228.12 gi|240103037|ref|YP_002959346.1| - 5.3e-13 49.3 0.7 1.2e-11 44.9 0.7 2.5 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) DUF948 PF06103.11 gi|240103037|ref|YP_002959346.1| - 0.0039 17.4 5.6 1.8 8.9 0.1 5.5 4 2 1 5 5 5 1 Bacterial protein of unknown function (DUF948) DUF4363 PF14276.6 gi|240103037|ref|YP_002959346.1| - 0.025 14.7 1.0 0.025 14.7 1.0 4.9 3 2 2 5 5 5 0 Domain of unknown function (DUF4363) Med28 PF11594.8 gi|240103037|ref|YP_002959346.1| - 0.026 14.6 1.5 0.12 12.5 0.1 2.9 2 1 0 2 2 2 0 Mediator complex subunit 28 YscO PF07321.12 gi|240103037|ref|YP_002959346.1| - 0.036 14.0 3.2 2.5 8.1 0.2 3.4 3 0 0 3 3 3 0 Type III secretion protein YscO Lectin_N PF03954.14 gi|240103037|ref|YP_002959346.1| - 0.042 13.6 3.1 7 6.4 0.1 2.9 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain MSA-2c PF12238.8 gi|240103037|ref|YP_002959346.1| - 0.16 12.0 6.9 0.077 13.0 3.4 2.3 2 0 0 2 2 2 0 Merozoite surface antigen 2c Ubiq_cyt_C_chap PF03981.12 gi|240103037|ref|YP_002959346.1| - 0.21 11.7 0.8 21 5.2 0.1 2.5 2 0 0 2 2 2 0 Ubiquinol-cytochrome C chaperone Snapin_Pallidin PF14712.6 gi|240103037|ref|YP_002959346.1| - 3.1 8.3 17.7 0.44 11.0 0.3 5.4 4 2 0 4 4 4 0 Snapin/Pallidin Mucin PF01456.17 gi|240103037|ref|YP_002959346.1| - 6.1 6.8 21.9 12 5.9 21.9 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF1664 PF07889.12 gi|240103037|ref|YP_002959346.1| - 6.1 6.9 14.6 22 5.1 0.1 5.4 4 2 2 6 6 6 0 Protein of unknown function (DUF1664) Pkinase PF00069.25 gi|240103038|ref|YP_002959347.1| - 5.5e-44 150.5 0.1 2.1e-43 148.6 0.0 1.9 2 0 0 2 2 2 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|240103038|ref|YP_002959347.1| - 1.1e-24 87.1 0.0 2.7e-24 85.9 0.0 1.7 1 1 0 1 1 1 1 Protein tyrosine kinase FlbT PF07378.11 gi|240103038|ref|YP_002959347.1| - 0.048 13.7 1.3 0.28 11.3 0.1 2.9 2 1 1 3 3 3 0 Flagellar protein FlbT FliG_N PF14842.6 gi|240103038|ref|YP_002959347.1| - 0.056 14.0 2.6 5.4 7.6 0.0 3.4 3 0 0 3 3 3 0 FliG N-terminal domain APH PF01636.23 gi|240103038|ref|YP_002959347.1| - 0.059 13.3 0.0 0.37 10.7 0.0 2.1 1 1 1 2 2 2 0 Phosphotransferase enzyme family DUF4240 PF14024.6 gi|240103038|ref|YP_002959347.1| - 0.063 13.5 0.2 0.25 11.5 0.2 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4240) TPR_11 PF13414.6 gi|240103038|ref|YP_002959347.1| - 0.076 12.7 0.1 0.33 10.7 0.1 2.1 1 0 0 1 1 1 0 TPR repeat MIS13 PF08202.11 gi|240103038|ref|YP_002959347.1| - 0.29 10.4 5.6 0.54 9.5 5.0 1.7 1 1 0 1 1 1 0 Mis12-Mtw1 protein family FTA2 PF13095.6 gi|240103038|ref|YP_002959347.1| - 0.39 10.3 5.4 5.8 6.5 0.0 3.4 4 1 0 4 4 4 0 Kinetochore Sim4 complex subunit FTA2 TPR_2 PF07719.17 gi|240103038|ref|YP_002959347.1| - 0.85 9.9 11.0 4.1 7.8 0.1 4.1 3 0 0 3 3 3 0 Tetratricopeptide repeat DDE_Tnp_IS240 PF13610.6 gi|240103038|ref|YP_002959347.1| - 1.3 9.3 5.5 1.6 8.9 0.1 2.8 3 0 0 3 3 3 0 DDE domain PEGA PF08308.11 gi|240103039|ref|YP_002959348.1| - 1.1e-107 352.0 40.2 9.5e-21 73.5 1.3 7.4 4 2 3 7 7 7 6 PEGA domain Laminin_G_3 PF13385.6 gi|240103039|ref|YP_002959348.1| - 1.8e-35 122.4 26.5 4.8e-28 98.2 1.3 7.5 6 3 2 9 9 8 3 Concanavalin A-like lectin/glucanases superfamily CarboxypepD_reg PF13620.6 gi|240103039|ref|YP_002959348.1| - 1.3e-26 92.6 11.0 4.5e-05 23.7 0.9 7.9 7 1 1 8 8 8 5 Carboxypeptidase regulatory-like domain DUF2341 PF10102.9 gi|240103039|ref|YP_002959348.1| - 5.2e-25 87.9 4.7 2.9e-24 85.5 1.1 3.0 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) CarbopepD_reg_2 PF13715.6 gi|240103039|ref|YP_002959348.1| - 3.4e-13 49.4 9.0 0.1 12.6 0.0 7.4 5 1 1 6 6 6 4 CarboxypepD_reg-like domain BetaGal_dom4_5 PF13364.6 gi|240103039|ref|YP_002959348.1| - 3.3e-06 27.6 2.7 0.67 10.5 0.0 5.2 3 2 2 5 5 5 1 Beta-galactosidase jelly roll domain DUF1080 PF06439.11 gi|240103039|ref|YP_002959348.1| - 3.4e-05 24.0 0.8 0.28 11.3 0.3 2.7 2 0 0 2 2 2 2 Domain of Unknown Function (DUF1080) AfaD PF05775.12 gi|240103039|ref|YP_002959348.1| - 5.6e-05 23.5 0.0 0.25 11.8 0.0 4.1 4 0 0 4 4 4 1 Enterobacteria AfaD invasin protein DUF1533 PF07550.11 gi|240103039|ref|YP_002959348.1| - 0.00066 19.5 3.9 8.6 6.3 0.0 5.6 5 0 0 5 5 5 1 Protein of unknown function (DUF1533) Sialidase PF02973.16 gi|240103039|ref|YP_002959348.1| - 0.0027 17.2 0.5 0.14 11.6 0.1 2.9 2 0 0 2 2 2 1 Sialidase, N-terminal domain DUF3244 PF11589.8 gi|240103039|ref|YP_002959348.1| - 0.0078 16.3 0.3 0.66 10.1 0.0 3.8 4 0 0 4 4 3 1 Domain of unknown function (DUF3244) Cadherin-like PF12733.7 gi|240103039|ref|YP_002959348.1| - 0.01 16.4 23.6 1.1 9.8 0.5 7.5 5 2 3 8 8 8 2 Cadherin-like beta sandwich domain Laminin_G_2 PF02210.24 gi|240103039|ref|YP_002959348.1| - 0.01 16.4 0.1 0.17 12.5 0.0 2.7 2 0 0 2 2 2 0 Laminin G domain fn3_5 PF06280.12 gi|240103039|ref|YP_002959348.1| - 0.044 14.5 0.6 1.3 9.7 0.1 3.1 2 1 0 2 2 2 0 Fn3-like domain Glyco_H_20C_C PF18088.1 gi|240103039|ref|YP_002959348.1| - 0.063 13.1 0.4 0.12 12.2 0.4 1.3 1 0 0 1 1 1 0 Glycoside Hydrolase 20C C-terminal domain RNA_pol_Rpb2_4 PF04566.13 gi|240103039|ref|YP_002959348.1| - 0.086 13.1 2.8 3.4 8.0 0.0 4.3 5 0 0 5 5 5 0 RNA polymerase Rpb2, domain 4 DUF3869 PF12985.7 gi|240103039|ref|YP_002959348.1| - 0.31 11.5 18.4 0.97 9.8 0.2 6.4 2 1 3 6 6 6 0 Domain of unknown function (DUF3869) DUF4397 PF14344.6 gi|240103039|ref|YP_002959348.1| - 0.96 10.2 14.4 50 4.7 0.0 6.6 7 1 0 7 7 7 0 Domain of unknown function (DUF4397) Snf7 PF03357.21 gi|240103040|ref|YP_002959349.1| - 0.0027 17.3 21.8 0.0051 16.4 21.8 1.4 1 1 0 1 1 1 1 Snf7 Osmo_CC PF08946.10 gi|240103040|ref|YP_002959349.1| - 0.0038 17.4 8.6 0.7 10.2 8.6 2.8 1 1 0 1 1 1 1 Osmosensory transporter coiled coil Serine_rich PF08824.10 gi|240103040|ref|YP_002959349.1| - 0.12 12.3 7.7 1.7 8.6 0.1 2.2 1 1 1 2 2 2 0 Serine rich protein interaction domain XhlA PF10779.9 gi|240103040|ref|YP_002959349.1| - 0.18 12.0 10.6 1.1 9.5 0.0 3.4 2 1 1 3 3 3 0 Haemolysin XhlA FemAB PF02388.16 gi|240103040|ref|YP_002959349.1| - 0.34 9.7 8.5 0.25 10.2 7.2 1.4 1 1 0 1 1 1 0 FemAB family CENP-H PF05837.12 gi|240103040|ref|YP_002959349.1| - 0.43 11.0 13.4 80 3.7 13.4 2.4 1 1 0 1 1 1 0 Centromere protein H (CENP-H) DUF3287 PF11690.8 gi|240103040|ref|YP_002959349.1| - 0.59 9.9 5.5 0.3 10.8 0.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3287) FapA PF03961.13 gi|240103040|ref|YP_002959349.1| - 0.73 8.4 15.1 1.5 7.3 11.3 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A LOH1CR12 PF10158.9 gi|240103040|ref|YP_002959349.1| - 0.84 9.7 8.1 0.32 11.0 5.3 1.7 2 0 0 2 2 2 0 Tumour suppressor protein SAM_KSR1 PF13543.6 gi|240103040|ref|YP_002959349.1| - 1.5 9.0 11.2 2.9 8.0 7.5 2.4 1 1 1 2 2 2 0 SAM like domain present in kinase suppressor RAS 1 Allexi_40kDa PF05549.11 gi|240103040|ref|YP_002959349.1| - 1.6 8.2 6.6 0.59 9.6 4.1 1.5 2 0 0 2 2 2 0 Allexivirus 40kDa protein DUF724 PF05266.14 gi|240103040|ref|YP_002959349.1| - 2.2 8.1 13.6 0.67 9.8 8.6 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF724) DUF948 PF06103.11 gi|240103040|ref|YP_002959349.1| - 2.7 8.3 6.9 12 6.2 2.8 2.6 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) YlqD PF11068.8 gi|240103040|ref|YP_002959349.1| - 3.5 8.0 18.5 0.23 11.8 10.2 2.2 2 1 0 2 2 2 0 YlqD protein Phage_TAC_7 PF10109.9 gi|240103041|ref|YP_002959350.1| - 0.23 11.6 6.8 1.6 8.9 2.9 2.7 2 1 1 3 3 3 0 Phage tail assembly chaperone proteins, E, or 41 or 14 L31 PF09784.9 gi|240103041|ref|YP_002959350.1| - 0.31 11.5 6.7 0.84 10.1 6.7 1.7 1 1 0 1 1 1 0 Mitochondrial ribosomal protein L31 Polbeta PF18765.1 gi|240103042|ref|YP_002959351.1| - 1.4e-22 79.6 0.0 1.8e-22 79.2 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|240103042|ref|YP_002959351.1| - 0.0032 17.7 0.2 0.005 17.1 0.2 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.17 gi|240103043|ref|YP_002959352.1| - 2.7e-29 101.4 0.0 3.4e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 MDMPI_N PF11716.8 gi|240103044|ref|YP_002959353.1| - 0.11 13.2 9.6 1.8 9.2 9.6 2.6 1 1 0 1 1 1 0 Mycothiol maleylpyruvate isomerase N-terminal domain DUF5082 PF16888.5 gi|240103044|ref|YP_002959353.1| - 0.13 12.5 14.3 0.36 11.1 13.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) 7TMR-HDED PF07697.11 gi|240103044|ref|YP_002959353.1| - 1.5 8.9 16.2 3.6 7.6 15.2 2.2 2 0 0 2 2 2 0 7TM-HD extracellular OmpH PF03938.14 gi|240103044|ref|YP_002959353.1| - 2.2 8.6 34.2 8.2 6.8 12.0 2.6 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF4778 PF16008.5 gi|240103044|ref|YP_002959353.1| - 3.8 7.5 13.0 9.1 6.2 13.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4778) DinB_2 PF12867.7 gi|240103044|ref|YP_002959353.1| - 5.1 7.6 6.9 80 3.8 6.9 2.7 1 1 0 1 1 1 0 DinB superfamily PilJ PF13675.6 gi|240103044|ref|YP_002959353.1| - 9.5 6.3 10.5 0.86 9.6 0.8 3.3 2 1 2 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term PP1_inhibitor PF05361.12 gi|240103045|ref|YP_002959354.1| - 0.068 13.2 1.8 12 5.9 1.3 2.3 1 1 1 2 2 2 0 PKC-activated protein phosphatase-1 inhibitor DUF5601 PF18151.1 gi|240103045|ref|YP_002959354.1| - 0.085 13.2 0.1 0.34 11.2 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5601) Pkinase PF00069.25 gi|240103046|ref|YP_002959355.1| - 1.8e-47 161.9 0.0 3.6e-47 160.9 0.0 1.5 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|240103046|ref|YP_002959355.1| - 1.3e-31 109.8 0.0 2.4e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase DUF5122 PF17164.4 gi|240103046|ref|YP_002959355.1| - 4.9e-07 29.9 14.6 0.13 12.6 0.2 4.6 4 0 0 4 4 4 3 Domain of unknown function (DUF5122) beta-propeller TPR_2 PF07719.17 gi|240103046|ref|YP_002959355.1| - 2.7e-05 24.0 10.5 1 9.7 0.0 5.9 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|240103046|ref|YP_002959355.1| - 0.00024 21.3 8.7 1.8 8.9 0.4 5.5 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|240103046|ref|YP_002959355.1| - 0.0031 17.2 3.7 0.32 10.7 0.0 3.8 4 0 0 4 4 3 1 TPR repeat CARDB PF07705.11 gi|240103046|ref|YP_002959355.1| - 0.0067 16.7 0.4 8.6 6.7 0.0 3.1 3 0 0 3 3 2 0 CARDB TPR_7 PF13176.6 gi|240103046|ref|YP_002959355.1| - 0.011 15.7 2.4 3.6 7.8 0.0 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat Kinase-like PF14531.6 gi|240103046|ref|YP_002959355.1| - 0.012 14.9 0.0 0.03 13.6 0.0 1.6 2 0 0 2 2 2 0 Kinase-like ABC1 PF03109.16 gi|240103046|ref|YP_002959355.1| - 0.053 13.7 0.0 0.43 10.7 0.0 2.4 2 1 0 2 2 2 0 ABC1 family APH PF01636.23 gi|240103046|ref|YP_002959355.1| - 0.057 13.3 0.1 0.33 10.8 0.0 2.3 2 0 0 2 2 2 0 Phosphotransferase enzyme family PaREP1 PF05942.11 gi|240103046|ref|YP_002959355.1| - 0.092 12.7 5.5 0.037 14.0 1.3 2.6 2 0 0 2 2 2 0 Archaeal PaREP1/PaREP8 family PQQ PF01011.21 gi|240103046|ref|YP_002959355.1| - 0.1 12.6 3.5 30 4.8 0.0 3.8 3 0 0 3 3 3 0 PQQ enzyme repeat Kelch_5 PF13854.6 gi|240103046|ref|YP_002959355.1| - 0.74 9.9 2.2 12 6.0 0.0 3.5 4 1 1 5 5 5 0 Kelch motif TPR_19 PF14559.6 gi|240103046|ref|YP_002959355.1| - 1 10.0 5.6 20 5.8 0.3 4.3 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|240103046|ref|YP_002959355.1| - 2.5 8.5 9.8 5.7 7.4 0.0 4.6 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|240103046|ref|YP_002959355.1| - 2.6 9.1 8.6 33 5.6 0.0 5.0 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF948 PF06103.11 gi|240103046|ref|YP_002959355.1| - 4 7.8 7.5 5.4 7.4 1.0 3.9 4 0 0 4 4 4 0 Bacterial protein of unknown function (DUF948) Kelch_3 PF13415.6 gi|240103046|ref|YP_002959355.1| - 4.5 7.7 4.9 9.3 6.7 0.3 2.8 3 0 0 3 3 2 0 Galactose oxidase, central domain Peptidase_S46 PF10459.9 gi|240103046|ref|YP_002959355.1| - 6 5.4 14.0 0.093 11.4 6.8 1.6 2 0 0 2 2 2 0 Peptidase S46 Laminin_II PF06009.12 gi|240103046|ref|YP_002959355.1| - 9.7 6.2 26.0 0.07 13.1 2.0 4.9 3 1 1 5 5 5 0 Laminin Domain II AAA_14 PF13173.6 gi|240103047|ref|YP_002959356.1| - 1.3e-18 67.2 0.0 3e-18 66.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|240103047|ref|YP_002959356.1| - 0.00021 21.3 0.1 0.0008 19.4 0.0 1.9 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea DUF4143 PF13635.6 gi|240103047|ref|YP_002959356.1| - 0.001 19.2 0.0 0.0016 18.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA PF00004.29 gi|240103047|ref|YP_002959356.1| - 0.0018 18.7 0.0 0.0028 18.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_24 PF13412.6 gi|240103047|ref|YP_002959356.1| - 0.0084 15.7 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|240103047|ref|YP_002959356.1| - 0.0094 15.9 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain AAA_22 PF13401.6 gi|240103047|ref|YP_002959356.1| - 0.07 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma70_r4 PF04545.16 gi|240103047|ref|YP_002959356.1| - 0.074 12.6 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|240103047|ref|YP_002959356.1| - 0.078 12.8 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|240103047|ref|YP_002959356.1| - 0.091 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HU-CCDC81_euk_2 PF18289.1 gi|240103047|ref|YP_002959356.1| - 0.11 12.6 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 TGS PF02824.21 gi|240103048|ref|YP_002959357.1| - 3.1e-24 84.8 0.0 8.3e-23 80.2 0.0 2.4 2 0 0 2 2 2 1 TGS domain MMR_HSR1 PF01926.23 gi|240103048|ref|YP_002959357.1| - 3.1e-22 78.8 0.0 2.1e-21 76.1 0.0 2.3 2 1 1 3 3 3 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|240103048|ref|YP_002959357.1| - 9.1e-21 73.9 0.1 1.8e-20 72.9 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|240103048|ref|YP_002959357.1| - 4.5e-11 42.5 0.0 5.4e-10 39.0 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|240103048|ref|YP_002959357.1| - 6.8e-05 23.0 0.2 0.0086 16.3 0.2 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF933) MMR_HSR1_C PF08438.10 gi|240103048|ref|YP_002959357.1| - 0.0002 21.9 0.1 0.00096 19.7 0.0 2.1 2 0 0 2 2 2 1 GTPase of unknown function C-terminal RsgA_GTPase PF03193.16 gi|240103048|ref|YP_002959357.1| - 0.0091 15.9 1.0 4.3 7.2 0.0 3.0 3 1 0 3 3 3 2 RsgA GTPase SRPRB PF09439.10 gi|240103048|ref|YP_002959357.1| - 0.01 15.3 0.1 0.029 13.8 0.0 1.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_18 PF13238.6 gi|240103048|ref|YP_002959357.1| - 0.069 13.7 0.0 0.2 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain Arf PF00025.21 gi|240103048|ref|YP_002959357.1| - 0.072 12.5 0.0 1.2 8.6 0.0 2.6 2 1 0 2 2 2 0 ADP-ribosylation factor family Dynamin_N PF00350.23 gi|240103048|ref|YP_002959357.1| - 0.083 12.9 0.1 4.4 7.3 0.0 2.9 2 1 1 3 3 3 0 Dynamin family Dus PF01207.17 gi|240103048|ref|YP_002959357.1| - 0.089 11.9 0.3 0.18 10.9 0.3 1.5 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) AAA_22 PF13401.6 gi|240103048|ref|YP_002959357.1| - 0.12 12.6 0.1 5.8 7.2 0.0 2.8 3 1 0 3 3 3 0 AAA domain Myb_DNA-bind_4 PF13837.6 gi|240103048|ref|YP_002959357.1| - 0.3 11.5 1.9 6.6 7.2 0.2 2.7 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain AsnC_trans_reg PF01037.21 gi|240103049|ref|YP_002959358.1| - 2.3e-21 75.5 0.2 3.6e-21 74.9 0.2 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|240103049|ref|YP_002959358.1| - 3.7e-17 61.9 0.2 6e-17 61.2 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|240103049|ref|YP_002959358.1| - 9.8e-16 57.1 1.7 1.4e-15 56.6 1.7 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding NapD PF03927.13 gi|240103049|ref|YP_002959358.1| - 1.8e-06 27.9 0.2 3.8e-06 26.8 0.0 1.6 2 0 0 2 2 1 1 NapD protein HTH_5 PF01022.20 gi|240103049|ref|YP_002959358.1| - 4.5e-06 26.4 0.1 6.7e-06 25.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|240103049|ref|YP_002959358.1| - 5.5e-06 26.2 0.1 1.3e-05 25.0 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|240103049|ref|YP_002959358.1| - 5.2e-05 22.9 0.2 9.7e-05 22.1 0.2 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|240103049|ref|YP_002959358.1| - 0.00021 21.0 0.0 0.00042 20.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|240103049|ref|YP_002959358.1| - 0.00025 21.1 0.2 0.00041 20.4 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain AsnC_trans_reg2 PF17805.1 gi|240103049|ref|YP_002959358.1| - 0.00032 20.8 0.1 0.001 19.1 0.0 1.8 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_11 PF08279.12 gi|240103049|ref|YP_002959358.1| - 0.00056 19.8 0.3 0.001 18.9 0.3 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|240103049|ref|YP_002959358.1| - 0.0016 18.3 0.5 0.0028 17.5 0.5 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|240103049|ref|YP_002959358.1| - 0.0021 18.1 0.0 0.0037 17.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|240103049|ref|YP_002959358.1| - 0.0022 17.9 0.3 0.0042 17.0 0.3 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RepL PF05732.11 gi|240103049|ref|YP_002959358.1| - 0.0028 17.1 0.1 0.0041 16.6 0.1 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) LexA_DNA_bind PF01726.16 gi|240103049|ref|YP_002959358.1| - 0.0061 16.3 0.2 0.011 15.5 0.2 1.3 1 0 0 1 1 1 1 LexA DNA binding domain MarR_2 PF12802.7 gi|240103049|ref|YP_002959358.1| - 0.01 15.7 0.1 0.018 14.9 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.12 gi|240103049|ref|YP_002959358.1| - 0.015 15.1 0.1 0.028 14.2 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.6 gi|240103049|ref|YP_002959358.1| - 0.031 14.3 0.1 0.057 13.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|240103049|ref|YP_002959358.1| - 0.035 14.3 0.2 0.085 13.1 0.2 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.12 gi|240103049|ref|YP_002959358.1| - 0.04 13.6 0.6 0.096 12.4 0.6 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 Rrf2 PF02082.20 gi|240103049|ref|YP_002959358.1| - 0.041 14.2 0.2 0.31 11.4 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator DHDPS PF00701.22 gi|240103049|ref|YP_002959358.1| - 0.061 12.0 0.0 0.08 11.6 0.0 1.2 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family HTH_Tnp_IS630 PF01710.16 gi|240103049|ref|YP_002959358.1| - 0.077 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Transposase GYD PF08734.11 gi|240103049|ref|YP_002959358.1| - 0.078 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 GYD domain HTH_27 PF13463.6 gi|240103049|ref|YP_002959358.1| - 0.084 13.4 0.1 0.17 12.4 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_40 PF14493.6 gi|240103049|ref|YP_002959358.1| - 0.092 13.2 0.1 0.14 12.6 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.19 gi|240103049|ref|YP_002959358.1| - 0.11 12.6 0.1 0.26 11.5 0.0 1.6 2 0 0 2 2 1 0 Ferric uptake regulator family HTH_50 PF18024.1 gi|240103049|ref|YP_002959358.1| - 0.2 11.3 2.0 0.28 10.8 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 gi|240103050|ref|YP_002959359.1| - 1.5e-10 40.8 0.9 3.9e-10 39.5 0.7 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|240103050|ref|YP_002959359.1| - 6.5e-06 25.6 0.6 1.7e-05 24.3 0.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|240103050|ref|YP_002959359.1| - 0.00014 21.6 0.3 0.00067 19.4 0.2 2.0 1 1 1 2 2 2 1 IclR helix-turn-helix domain FaeA PF04703.12 gi|240103050|ref|YP_002959359.1| - 0.00059 20.1 2.4 0.0011 19.3 0.1 2.1 2 0 0 2 2 2 1 FaeA-like protein HTH_11 PF08279.12 gi|240103050|ref|YP_002959359.1| - 0.00062 19.7 0.6 0.00062 19.7 0.6 1.8 2 0 0 2 2 2 1 HTH domain LexA_DNA_bind PF01726.16 gi|240103050|ref|YP_002959359.1| - 0.00077 19.2 0.6 0.0015 18.2 0.1 1.7 2 0 0 2 2 2 1 LexA DNA binding domain HTH_Mga PF08280.11 gi|240103050|ref|YP_002959359.1| - 0.0012 18.8 0.2 0.0096 15.9 0.2 2.2 2 1 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.20 gi|240103050|ref|YP_002959359.1| - 0.0034 17.2 0.2 0.0051 16.7 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|240103050|ref|YP_002959359.1| - 0.0035 17.1 0.2 0.0064 16.3 0.2 1.5 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 gi|240103050|ref|YP_002959359.1| - 0.0063 16.0 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_40 PF14493.6 gi|240103050|ref|YP_002959359.1| - 0.011 16.1 0.4 0.017 15.5 0.4 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|240103050|ref|YP_002959359.1| - 0.017 15.2 0.4 0.027 14.5 0.2 1.5 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|240103050|ref|YP_002959359.1| - 0.024 14.8 0.1 0.045 13.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|240103050|ref|YP_002959359.1| - 0.057 13.3 0.7 0.11 12.4 0.1 1.8 2 0 0 2 2 2 0 MarR family HTH_36 PF13730.6 gi|240103050|ref|YP_002959359.1| - 0.063 13.2 2.3 0.53 10.3 0.2 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain Dimerisation2 PF16864.5 gi|240103050|ref|YP_002959359.1| - 0.076 13.0 0.0 0.086 12.8 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain HTH_DeoR PF08220.12 gi|240103050|ref|YP_002959359.1| - 0.14 11.9 0.4 0.14 11.9 0.4 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Peptidase_M28 PF04389.17 gi|240103051|ref|YP_002959360.1| - 3.1e-18 66.2 0.0 7.7e-18 64.9 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M28 DUF4910 PF16254.5 gi|240103051|ref|YP_002959360.1| - 1.3e-09 37.3 0.0 8.6e-09 34.6 0.0 2.1 2 1 1 3 3 3 1 Domain of unknown function (DUF4910) PA PF02225.22 gi|240103051|ref|YP_002959360.1| - 0.0036 17.3 0.0 0.0073 16.3 0.0 1.5 1 0 0 1 1 1 1 PA domain ATPase PF06745.13 gi|240103053|ref|YP_002959362.1| - 4e-49 167.1 0.0 4.5e-49 166.9 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|240103053|ref|YP_002959362.1| - 1.5e-09 37.7 0.0 2.9e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|240103053|ref|YP_002959362.1| - 1.6e-05 24.5 0.0 2.5e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein DnaB_C PF03796.15 gi|240103053|ref|YP_002959362.1| - 0.0002 20.8 0.0 0.0021 17.4 0.0 2.0 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|240103053|ref|YP_002959362.1| - 0.00027 19.7 0.7 0.0025 16.5 0.7 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein DUF2075 PF09848.9 gi|240103053|ref|YP_002959362.1| - 0.00085 18.7 0.0 0.0012 18.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|240103053|ref|YP_002959362.1| - 0.001 19.3 0.0 0.0019 18.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|240103053|ref|YP_002959362.1| - 0.0049 16.6 0.1 0.07 12.9 0.0 2.1 1 1 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|240103053|ref|YP_002959362.1| - 0.0081 16.7 0.5 0.03 14.9 0.3 2.0 1 1 1 2 2 2 1 AAA domain PAXNEB PF05625.11 gi|240103053|ref|YP_002959362.1| - 0.0086 15.2 0.4 0.36 9.9 0.1 2.1 2 0 0 2 2 2 1 PAXNEB protein AAA_24 PF13479.6 gi|240103053|ref|YP_002959362.1| - 0.013 15.2 0.3 0.057 13.1 0.1 2.1 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|240103053|ref|YP_002959362.1| - 0.015 15.6 0.8 0.036 14.4 0.8 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|240103053|ref|YP_002959362.1| - 0.019 14.7 0.0 0.043 13.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|240103053|ref|YP_002959362.1| - 0.022 13.8 0.0 0.033 13.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|240103053|ref|YP_002959362.1| - 0.027 14.4 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|240103053|ref|YP_002959362.1| - 0.03 14.7 0.1 0.046 14.1 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|240103053|ref|YP_002959362.1| - 0.049 13.3 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|240103053|ref|YP_002959362.1| - 0.071 13.0 0.1 0.17 11.8 0.1 1.6 1 0 0 1 1 1 0 NTPase cobW PF02492.19 gi|240103053|ref|YP_002959362.1| - 0.077 12.6 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_11 PF13086.6 gi|240103053|ref|YP_002959362.1| - 0.11 12.2 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|240103053|ref|YP_002959362.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain Zot PF05707.12 gi|240103053|ref|YP_002959362.1| - 0.15 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_23 PF13476.6 gi|240103053|ref|YP_002959362.1| - 0.18 12.3 0.2 0.52 10.8 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|240103053|ref|YP_002959362.1| - 0.21 11.7 0.2 0.31 11.2 0.2 1.7 1 1 0 1 1 1 0 AAA domain HAD PF12710.7 gi|240103054|ref|YP_002959363.1| - 2.3e-21 77.1 0.1 2.7e-21 76.8 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240103054|ref|YP_002959363.1| - 3.5e-17 63.4 0.0 2.5e-16 60.6 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|240103054|ref|YP_002959363.1| - 4.7e-07 30.1 0.0 2.7e-06 27.6 0.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|240103054|ref|YP_002959363.1| - 5.5e-07 29.6 0.0 7e-05 22.7 0.0 2.9 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|240103054|ref|YP_002959363.1| - 0.0046 16.4 0.0 0.023 14.1 0.0 2.1 1 1 0 1 1 1 1 Putative Phosphatase UMPH-1 PF05822.12 gi|240103054|ref|YP_002959363.1| - 0.05 13.1 0.0 0.063 12.8 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) GGDEF_2 PF17853.1 gi|240103054|ref|YP_002959363.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 GGDEF-like domain S6PP PF05116.13 gi|240103054|ref|YP_002959363.1| - 0.14 11.6 0.0 0.31 10.5 0.0 1.5 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Arc_PepC PF06819.11 gi|240103055|ref|YP_002959364.1| - 2.6e-29 101.6 0.5 4.2e-29 100.9 0.5 1.3 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain Arc_PepC_II PF06847.11 gi|240103055|ref|YP_002959364.1| - 3.7e-05 24.2 0.0 0.00012 22.5 0.0 2.0 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II FtsX PF02687.21 gi|240103055|ref|YP_002959364.1| - 0.011 16.2 5.0 0.011 16.2 5.0 3.4 4 1 0 4 4 4 0 FtsX-like permease family ASCH PF04266.14 gi|240103056|ref|YP_002959365.1| - 1e-13 51.8 0.1 1.2e-13 51.5 0.1 1.1 1 0 0 1 1 1 1 ASCH domain HSDR_N PF04313.14 gi|240103056|ref|YP_002959365.1| - 0.07 13.1 0.1 0.07 13.1 0.1 1.3 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) ASCH PF04266.14 gi|240103057|ref|YP_002959366.1| - 1.9e-18 67.0 0.2 3.9e-18 66.0 0.1 1.5 2 0 0 2 2 2 1 ASCH domain RHH_1 PF01402.21 gi|240103057|ref|YP_002959366.1| - 0.0074 16.2 1.8 0.36 10.8 0.5 2.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family TTRAP PF14203.6 gi|240103057|ref|YP_002959366.1| - 0.014 15.3 0.2 0.68 9.9 0.0 2.5 2 1 0 2 2 2 0 Putative tranposon-transfer assisting protein HupF_HypC PF01455.18 gi|240103057|ref|YP_002959366.1| - 0.019 15.1 0.0 0.032 14.4 0.0 1.5 1 0 0 1 1 1 0 HupF/HypC family Ribonucleas_3_2 PF11469.8 gi|240103058|ref|YP_002959367.1| - 4.6e-48 162.5 0.0 6.4e-48 162.1 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease III Mannosyl_trans2 PF04188.13 gi|240103059|ref|YP_002959368.1| - 1.9e-07 30.8 6.2 2.2e-05 24.0 1.3 3.2 2 1 0 2 2 2 2 Mannosyltransferase (PIG-V) GT87 PF09594.10 gi|240103059|ref|YP_002959368.1| - 0.0019 18.0 18.9 0.0019 18.0 18.9 1.9 1 1 1 2 2 2 1 Glycosyltransferase family 87 RNA_pol_L_2 PF13656.6 gi|240103060|ref|YP_002959369.1| - 8.1e-20 70.4 0.0 9.8e-20 70.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|240103060|ref|YP_002959369.1| - 4.8e-08 32.3 0.0 8.4e-08 31.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2067 PF09840.9 gi|240103061|ref|YP_002959370.1| - 6.6e-49 166.0 2.0 7.7e-49 165.8 2.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) DUF2236 PF09995.9 gi|240103061|ref|YP_002959370.1| - 0.016 15.4 0.0 0.026 14.7 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2236) ECR1_N PF14382.6 gi|240103062|ref|YP_002959371.1| - 3.7e-09 36.2 0.0 7.7e-09 35.2 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|240103062|ref|YP_002959371.1| - 7.7e-07 29.7 3.2 0.0023 18.5 0.4 2.5 1 1 1 2 2 2 2 Exosome component EXOSC1/CSL4 S1 PF00575.23 gi|240103062|ref|YP_002959371.1| - 0.00014 22.1 0.9 0.12 12.8 0.1 2.3 2 0 0 2 2 2 2 S1 RNA binding domain DZR PF12773.7 gi|240103062|ref|YP_002959371.1| - 0.0014 18.6 0.3 0.0022 18.0 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|240103062|ref|YP_002959371.1| - 0.0024 18.0 1.7 0.0039 17.3 1.7 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PCB_OB PF17092.5 gi|240103062|ref|YP_002959371.1| - 0.0039 17.9 0.3 0.0067 17.2 0.3 1.4 1 0 0 1 1 1 1 Penicillin-binding protein OB-like domain zinc_ribbon_2 PF13240.6 gi|240103062|ref|YP_002959371.1| - 0.0071 16.0 2.3 1.7 8.5 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain HscB_4_cys PF18256.1 gi|240103062|ref|YP_002959371.1| - 0.013 15.3 1.1 3.8 7.4 0.2 2.3 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Prok-RING_1 PF14446.6 gi|240103062|ref|YP_002959371.1| - 0.015 15.2 0.4 0.027 14.4 0.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 FapA PF03961.13 gi|240103062|ref|YP_002959371.1| - 0.03 13.0 0.0 0.041 12.5 0.0 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A A2L_zn_ribbon PF08792.10 gi|240103062|ref|YP_002959371.1| - 0.032 14.0 0.2 0.069 12.9 0.2 1.5 1 1 0 1 1 1 0 A2L zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|240103062|ref|YP_002959371.1| - 0.048 13.8 0.7 0.11 12.7 0.7 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.6 gi|240103062|ref|YP_002959371.1| - 0.061 12.7 1.6 0.18 11.3 1.7 1.7 1 1 0 1 1 1 0 zinc-ribbon domain ADK_lid PF05191.14 gi|240103062|ref|YP_002959371.1| - 0.071 13.1 1.7 4 7.5 0.1 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-IS66 PF13005.7 gi|240103062|ref|YP_002959371.1| - 0.16 12.4 3.0 8.8 6.8 0.1 3.0 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.7 gi|240103062|ref|YP_002959371.1| - 0.16 11.9 1.6 0.25 11.3 0.0 1.9 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|240103062|ref|YP_002959371.1| - 0.39 11.0 1.4 2.9 8.2 0.5 2.4 2 0 0 2 2 2 0 zinc-ribbon zf-NADH-PPase PF09297.11 gi|240103062|ref|YP_002959371.1| - 1.5 8.5 4.5 4.5 7.0 4.5 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF432 PF04254.13 gi|240103063|ref|YP_002959372.1| - 1.6e-28 99.4 0.1 3.2e-28 98.4 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF432) MS_channel PF00924.18 gi|240103064|ref|YP_002959373.1| - 8.6e-54 182.2 2.1 1.5e-53 181.5 2.1 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel tRNA-Thr_ED PF08915.11 gi|240103065|ref|YP_002959374.1| - 2.7e-56 189.4 0.3 6.9e-56 188.1 0.3 1.7 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|240103065|ref|YP_002959374.1| - 4.8e-25 87.5 3.7 4.8e-25 87.5 3.7 2.8 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|240103065|ref|YP_002959374.1| - 1.3e-19 70.8 0.1 2.6e-19 69.9 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon2 PF12745.7 gi|240103065|ref|YP_002959374.1| - 0.043 13.3 0.2 0.07 12.6 0.2 1.3 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs RIO1 PF01163.22 gi|240103068|ref|YP_002959377.1| - 5.8e-17 61.9 0.2 8.3e-17 61.4 0.2 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|240103068|ref|YP_002959377.1| - 2.1e-14 53.5 0.6 2.6e-14 53.2 0.6 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|240103068|ref|YP_002959377.1| - 5.2e-12 45.6 0.3 6.3e-12 45.3 0.3 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|240103068|ref|YP_002959377.1| - 1.8e-11 43.8 0.2 2.6e-11 43.3 0.2 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|240103068|ref|YP_002959377.1| - 2.4e-10 40.7 0.8 7.8e-05 22.7 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family WaaY PF06176.11 gi|240103068|ref|YP_002959377.1| - 0.00066 19.4 0.1 0.00095 18.8 0.1 1.4 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Kinase-like PF14531.6 gi|240103068|ref|YP_002959377.1| - 0.0041 16.5 0.0 0.0056 16.0 0.0 1.2 1 0 0 1 1 1 1 Kinase-like EcKinase PF02958.20 gi|240103068|ref|YP_002959377.1| - 0.0048 16.2 0.0 0.007 15.7 0.0 1.4 1 1 0 1 1 1 1 Ecdysteroid kinase Choline_kinase PF01633.20 gi|240103068|ref|YP_002959377.1| - 0.013 15.1 0.0 0.065 12.8 0.0 1.9 1 1 1 2 2 2 0 Choline/ethanolamine kinase Pkinase_fungal PF17667.1 gi|240103068|ref|YP_002959377.1| - 0.031 13.0 0.1 0.046 12.5 0.1 1.3 1 1 0 1 1 1 0 Fungal protein kinase FTA2 PF13095.6 gi|240103068|ref|YP_002959377.1| - 0.036 13.7 0.0 0.059 13.0 0.0 1.4 1 1 0 1 1 1 0 Kinetochore Sim4 complex subunit FTA2 Cpn60_TCP1 PF00118.24 gi|240103069|ref|YP_002959378.1| - 1.2e-183 611.2 22.4 1.4e-183 611.1 22.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_5 PF07728.14 gi|240103069|ref|YP_002959378.1| - 0.041 13.9 0.2 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RVT_N PF13655.6 gi|240103069|ref|YP_002959378.1| - 0.07 13.4 0.4 1.4 9.3 0.0 2.4 2 0 0 2 2 2 0 N-terminal domain of reverse transcriptase Peptidase_M48 PF01435.18 gi|240103070|ref|YP_002959379.1| - 5.8e-37 127.4 0.0 7.9e-37 126.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|240103070|ref|YP_002959379.1| - 0.001 18.3 0.1 0.0018 17.5 0.0 1.6 2 0 0 2 2 2 1 BlaR1 peptidase M56 AI-2E_transport PF01594.16 gi|240103070|ref|YP_002959379.1| - 0.011 14.9 6.2 0.011 14.9 6.2 1.7 2 0 0 2 2 2 0 AI-2E family transporter Abhydrolase_9_N PF15420.6 gi|240103070|ref|YP_002959379.1| - 0.16 12.0 4.7 4.9 7.1 0.9 2.3 2 0 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus MgtE PF01769.16 gi|240103070|ref|YP_002959379.1| - 0.19 12.1 6.1 4.3 7.7 1.9 2.2 2 0 0 2 2 2 0 Divalent cation transporter DUF1129 PF06570.11 gi|240103070|ref|YP_002959379.1| - 2.8 7.4 6.1 9 5.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) ABC_tran PF00005.27 gi|240103071|ref|YP_002959380.1| - 1.2e-34 119.7 0.0 2e-34 119.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|240103071|ref|YP_002959380.1| - 7.4e-10 38.9 0.2 9.2e-09 35.3 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|240103071|ref|YP_002959380.1| - 1.1e-06 28.7 0.0 0.0044 16.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240103071|ref|YP_002959380.1| - 0.0006 19.3 0.1 0.016 14.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|240103071|ref|YP_002959380.1| - 0.0011 19.2 1.0 0.0092 16.3 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|240103071|ref|YP_002959380.1| - 0.0037 17.7 0.1 0.014 15.8 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|240103071|ref|YP_002959380.1| - 0.0083 16.1 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain TOBE PF03459.17 gi|240103071|ref|YP_002959380.1| - 0.014 15.7 0.0 0.037 14.3 0.0 1.8 1 0 0 1 1 1 0 TOBE domain TniB PF05621.11 gi|240103071|ref|YP_002959380.1| - 0.015 14.7 0.5 0.43 10.0 0.3 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_16 PF13191.6 gi|240103071|ref|YP_002959380.1| - 0.02 15.3 0.0 0.043 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|240103071|ref|YP_002959380.1| - 0.037 13.7 0.0 0.35 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|240103071|ref|YP_002959380.1| - 0.054 13.4 0.1 0.23 11.3 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase RecG_N PF17190.4 gi|240103071|ref|YP_002959380.1| - 0.11 13.3 0.1 0.37 11.5 0.1 1.9 2 0 0 2 2 1 0 RecG N-terminal helical domain AAA_19 PF13245.6 gi|240103071|ref|YP_002959380.1| - 0.12 12.7 0.1 0.7 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|240103071|ref|YP_002959380.1| - 0.2 11.4 0.1 0.69 9.7 0.1 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|240103071|ref|YP_002959380.1| - 0.29 11.4 0.7 0.75 10.0 0.2 1.9 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|240103072|ref|YP_002959381.1| - 1.4e-27 96.6 39.2 5.9e-15 55.5 14.9 3.9 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component PepSY_TM PF03929.16 gi|240103072|ref|YP_002959381.1| - 0.051 13.2 1.8 0.12 12.1 1.8 1.7 1 0 0 1 1 1 0 PepSY-associated TM region SBP_bac_6 PF13343.6 gi|240103073|ref|YP_002959382.1| - 1.5e-28 99.8 6.3 2.1e-28 99.4 6.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|240103073|ref|YP_002959382.1| - 2e-26 93.5 8.4 2.5e-26 93.2 8.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|240103073|ref|YP_002959382.1| - 3e-26 92.6 0.0 3.9e-26 92.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|240103073|ref|YP_002959382.1| - 2.7e-24 86.7 14.0 3.5e-24 86.3 14.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 gi|240103073|ref|YP_002959382.1| - 0.005 16.5 0.5 0.42 10.2 0.1 2.2 2 0 0 2 2 2 2 PBP superfamily domain Glyco_tran_WecB PF03808.13 gi|240103073|ref|YP_002959382.1| - 0.052 13.5 0.0 0.082 12.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family adh_short_C2 PF13561.6 gi|240103075|ref|YP_002959384.1| - 1.9e-32 112.7 0.0 2.5e-32 112.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|240103075|ref|YP_002959384.1| - 7.6e-26 90.8 0.0 9.8e-26 90.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|240103075|ref|YP_002959384.1| - 0.0094 16.2 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|240103075|ref|YP_002959384.1| - 0.017 15.1 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 KR domain Pyr_redox_2 PF07992.14 gi|240103076|ref|YP_002959385.1| - 3.8e-30 105.1 0.2 8.1e-30 104.1 0.2 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|240103076|ref|YP_002959385.1| - 2.2e-12 47.4 6.0 1e-06 29.2 1.0 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|240103076|ref|YP_002959385.1| - 5.3e-12 45.6 1.5 1.3e-07 31.2 0.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|240103076|ref|YP_002959385.1| - 4.4e-07 30.0 1.0 8.3e-07 29.2 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|240103076|ref|YP_002959385.1| - 1.2e-06 28.3 5.9 0.002 17.8 0.5 3.5 3 1 1 4 4 4 2 FAD dependent oxidoreductase Shikimate_DH PF01488.20 gi|240103076|ref|YP_002959385.1| - 1.5e-06 28.3 0.0 0.21 11.6 0.1 4.0 3 1 1 4 4 4 2 Shikimate / quinate 5-dehydrogenase FAD_binding_2 PF00890.24 gi|240103076|ref|YP_002959385.1| - 2.7e-06 26.7 1.0 2.8e-05 23.4 0.2 2.4 2 1 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|240103076|ref|YP_002959385.1| - 1.6e-05 24.3 0.2 3.9e-05 23.1 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|240103076|ref|YP_002959385.1| - 2.1e-05 23.4 0.5 2.1e-05 23.4 0.5 1.8 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|240103076|ref|YP_002959385.1| - 4.2e-05 22.9 1.8 0.0093 15.3 0.1 2.5 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|240103076|ref|YP_002959385.1| - 0.00027 20.3 0.4 0.00084 18.6 0.1 1.9 2 0 0 2 2 2 1 Thi4 family 2-Hacid_dh_C PF02826.19 gi|240103076|ref|YP_002959385.1| - 0.00057 19.3 0.1 1.6 8.1 0.0 3.1 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|240103076|ref|YP_002959385.1| - 0.0042 17.5 0.3 1.2 9.6 0.1 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_9 PF13454.6 gi|240103076|ref|YP_002959385.1| - 0.0047 16.9 4.9 0.013 15.5 0.2 3.0 2 1 1 3 3 3 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|240103076|ref|YP_002959385.1| - 0.0081 15.3 1.9 0.034 13.2 0.6 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|240103076|ref|YP_002959385.1| - 0.016 15.1 4.0 0.02 14.8 0.4 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FMO-like PF00743.19 gi|240103076|ref|YP_002959385.1| - 0.027 12.9 0.0 0.49 8.7 0.0 2.0 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like FAD_oxidored PF12831.7 gi|240103076|ref|YP_002959385.1| - 0.049 13.0 1.4 0.083 12.2 0.0 2.0 2 1 1 3 3 3 0 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|240103076|ref|YP_002959385.1| - 0.12 11.5 0.0 1.2 8.2 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DS PF01916.17 gi|240103077|ref|YP_002959386.1| - 3.3e-112 374.5 0.0 3.7e-112 374.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase BLI1 PF17324.2 gi|240103077|ref|YP_002959386.1| - 0.15 12.8 0.1 0.29 11.8 0.1 1.4 1 0 0 1 1 1 0 BLOC-1 interactor 1 FAD_binding_4 PF01565.23 gi|240103078|ref|YP_002959387.1| - 4.4e-40 136.6 0.0 8.1e-40 135.8 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|240103078|ref|YP_002959387.1| - 7.7e-33 114.2 0.1 1.2e-32 113.6 0.1 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain CCG PF02754.16 gi|240103079|ref|YP_002959388.1| - 9.9e-30 102.6 1.8 1.5e-16 60.4 0.3 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|240103079|ref|YP_002959388.1| - 6e-07 29.8 2.4 6e-07 29.8 2.4 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240103079|ref|YP_002959388.1| - 1.4e-05 25.9 2.2 1.4e-05 25.9 2.2 2.2 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|240103079|ref|YP_002959388.1| - 3.9e-05 23.7 6.7 0.094 12.8 0.0 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|240103079|ref|YP_002959388.1| - 9.7e-05 22.8 3.9 9.7e-05 22.8 3.9 2.2 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|240103079|ref|YP_002959388.1| - 0.00019 21.9 3.6 0.00019 21.9 3.6 2.3 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240103079|ref|YP_002959388.1| - 0.0017 18.4 7.7 0.0022 18.1 4.1 2.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240103079|ref|YP_002959388.1| - 0.012 16.1 0.9 0.012 16.1 0.9 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Integrase_Zn PF02022.19 gi|240103079|ref|YP_002959388.1| - 0.014 15.3 0.5 2.5 8.1 0.0 2.6 2 0 0 2 2 2 0 Integrase Zinc binding domain Fer4_20 PF14691.6 gi|240103079|ref|YP_002959388.1| - 0.015 15.0 2.2 2.5 7.9 0.1 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster zf-CSL PF05207.13 gi|240103079|ref|YP_002959388.1| - 0.018 14.8 4.8 3.2 7.6 0.0 3.7 4 0 0 4 4 4 0 CSL zinc finger Fer4_21 PF14697.6 gi|240103079|ref|YP_002959388.1| - 0.092 12.9 0.9 0.092 12.9 0.9 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain zinc_ribbon_5 PF13719.6 gi|240103079|ref|YP_002959388.1| - 0.31 10.8 2.7 1.8 8.4 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DAO PF01266.24 gi|240103080|ref|YP_002959389.1| - 2.9e-66 224.5 1.1 4.9e-66 223.7 0.6 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|240103080|ref|YP_002959389.1| - 3.1e-15 56.3 3.3 7.2e-15 55.1 3.3 1.7 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|240103080|ref|YP_002959389.1| - 5e-10 39.1 0.8 5.7e-05 22.5 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|240103080|ref|YP_002959389.1| - 5e-09 35.9 0.1 0.0022 17.3 0.2 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|240103080|ref|YP_002959389.1| - 6.8e-09 35.3 0.1 0.0024 17.0 0.9 2.2 1 1 1 2 2 2 2 FAD binding domain SO_alpha_A3 PF17806.1 gi|240103080|ref|YP_002959389.1| - 4.3e-07 30.2 0.0 9.6e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain NAD_binding_8 PF13450.6 gi|240103080|ref|YP_002959389.1| - 4e-06 27.0 0.2 1e-05 25.7 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|240103080|ref|YP_002959389.1| - 8.3e-06 25.2 0.8 0.0001 21.7 0.1 2.5 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 gi|240103080|ref|YP_002959389.1| - 8.7e-06 26.2 2.8 0.013 16.0 0.4 3.7 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|240103080|ref|YP_002959389.1| - 2.5e-05 23.2 0.4 0.02 13.6 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|240103080|ref|YP_002959389.1| - 6.2e-05 22.4 0.7 0.19 11.0 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|240103080|ref|YP_002959389.1| - 0.00025 20.2 0.2 0.00053 19.1 0.2 1.5 1 0 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.22 gi|240103080|ref|YP_002959389.1| - 0.00061 19.0 1.2 0.025 13.7 0.1 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|240103080|ref|YP_002959389.1| - 0.004 16.6 0.9 1.1 8.5 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase TrkA_N PF02254.18 gi|240103080|ref|YP_002959389.1| - 0.07 13.4 0.1 0.13 12.5 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Trp_halogenase PF04820.14 gi|240103080|ref|YP_002959389.1| - 0.12 11.2 1.3 1 8.1 0.3 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|240103080|ref|YP_002959389.1| - 0.14 12.1 1.0 0.79 9.7 0.1 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 gi|240103081|ref|YP_002959390.1| - 8e-33 113.9 0.6 1.1e-32 113.4 0.6 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|240103081|ref|YP_002959390.1| - 1.5e-14 54.3 4.0 4.4e-06 27.2 0.4 3.5 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|240103081|ref|YP_002959390.1| - 8.8e-14 51.5 0.0 8e-07 28.6 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|240103081|ref|YP_002959390.1| - 2.4e-10 40.5 9.7 1.9e-05 24.4 1.4 3.6 4 0 0 4 4 4 3 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|240103081|ref|YP_002959390.1| - 1.2e-09 38.0 3.0 1.9e-08 34.1 2.0 2.3 1 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|240103081|ref|YP_002959390.1| - 2.7e-09 36.7 4.0 9.4e-05 21.8 0.5 2.9 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|240103081|ref|YP_002959390.1| - 2.1e-08 33.3 4.8 1.2e-06 27.6 1.1 3.0 2 1 1 3 3 3 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|240103081|ref|YP_002959390.1| - 2.1e-08 33.7 11.6 3.8e-07 29.5 1.8 4.0 2 2 3 5 5 5 2 FAD binding domain NAD_binding_8 PF13450.6 gi|240103081|ref|YP_002959390.1| - 4.3e-08 33.3 4.4 2.1e-07 31.1 0.3 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|240103081|ref|YP_002959390.1| - 8.5e-08 31.9 1.3 0.0086 15.4 0.1 3.1 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|240103081|ref|YP_002959390.1| - 3e-06 26.6 0.3 5.3e-06 25.8 0.3 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|240103081|ref|YP_002959390.1| - 3e-06 27.6 0.6 0.0038 17.6 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding Thi4 PF01946.17 gi|240103081|ref|YP_002959390.1| - 5.3e-06 25.8 1.5 2e-05 24.0 0.2 2.1 2 0 0 2 2 2 1 Thi4 family Shikimate_DH PF01488.20 gi|240103081|ref|YP_002959390.1| - 9.8e-05 22.4 0.7 0.013 15.6 0.1 2.8 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase K_oxygenase PF13434.6 gi|240103081|ref|YP_002959390.1| - 0.00062 19.0 0.0 0.11 11.6 0.0 2.2 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|240103081|ref|YP_002959390.1| - 0.0018 17.2 3.3 0.091 11.6 0.6 2.1 2 0 0 2 2 2 2 Tryptophan halogenase TrkA_N PF02254.18 gi|240103081|ref|YP_002959390.1| - 0.011 15.9 2.5 2.7 8.3 0.2 2.5 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|240103081|ref|YP_002959390.1| - 0.014 15.4 1.8 0.52 10.3 0.2 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|240103081|ref|YP_002959390.1| - 0.02 14.0 4.6 0.02 14.0 0.6 2.4 3 0 0 3 3 3 0 Lycopene cyclase protein ApbA PF02558.16 gi|240103081|ref|YP_002959390.1| - 0.021 14.5 0.8 4.8 6.8 0.3 2.7 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|240103081|ref|YP_002959390.1| - 0.027 13.8 0.4 0.027 13.8 0.4 1.7 2 0 0 2 2 2 0 ThiF family YjeF_N PF03853.15 gi|240103081|ref|YP_002959390.1| - 0.08 12.8 0.3 12 5.8 0.0 2.2 2 0 0 2 2 2 0 YjeF-related protein N-terminus Spermine_synth PF01564.17 gi|240103081|ref|YP_002959390.1| - 0.46 9.8 2.6 0.6 9.5 0.4 2.1 2 0 0 2 2 2 0 Spermine/spermidine synthase domain 3HCDH_N PF02737.18 gi|240103081|ref|YP_002959390.1| - 0.48 10.3 2.6 0.44 10.4 0.2 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|240103081|ref|YP_002959390.1| - 0.62 9.3 5.7 0.49 9.6 0.3 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1667 PF07892.11 gi|240103082|ref|YP_002959391.1| - 4.8e-31 106.7 1.9 6.6e-31 106.2 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1667) FGGY_N PF00370.21 gi|240103083|ref|YP_002959392.1| - 1.9e-46 158.6 0.0 3.4e-22 79.2 0.0 2.2 2 0 0 2 2 2 2 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|240103083|ref|YP_002959392.1| - 2.5e-31 108.9 0.0 6.5e-31 107.6 0.0 1.6 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain AAA_14 PF13173.6 gi|240103084|ref|YP_002959393.1| - 1.3e-21 77.0 0.0 2.1e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|240103084|ref|YP_002959393.1| - 0.0024 17.8 0.0 0.0073 16.2 0.0 1.8 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|240103084|ref|YP_002959393.1| - 0.018 15.5 0.0 0.045 14.2 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|240103084|ref|YP_002959393.1| - 0.021 15.1 0.0 0.097 12.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain HTH_29 PF13551.6 gi|240103084|ref|YP_002959393.1| - 0.066 13.2 0.0 0.34 11.0 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix AAA_16 PF13191.6 gi|240103084|ref|YP_002959393.1| - 0.075 13.4 0.1 0.51 10.7 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.22 gi|240103084|ref|YP_002959393.1| - 0.11 12.9 0.0 0.47 10.9 0.0 2.0 2 0 0 2 2 2 0 RNA helicase MarR_2 PF12802.7 gi|240103084|ref|YP_002959393.1| - 0.13 12.2 0.0 0.98 9.4 0.0 2.2 2 0 0 2 2 2 0 MarR family DUF1743 PF08489.11 gi|240103086|ref|YP_002959395.1| - 6.8e-37 126.1 0.0 1.4e-36 125.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|240103086|ref|YP_002959395.1| - 8.7e-09 35.3 0.0 1.8e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|240103086|ref|YP_002959395.1| - 5.9e-06 26.4 0.0 1.1e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Prok-RING_1 PF14446.6 gi|240103086|ref|YP_002959395.1| - 0.0095 15.8 0.4 0.016 15.2 0.4 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.11 gi|240103086|ref|YP_002959395.1| - 0.056 13.4 1.7 0.11 12.5 1.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|240103086|ref|YP_002959395.1| - 0.066 12.9 3.2 0.16 11.6 3.2 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_S27 PF01599.19 gi|240103086|ref|YP_002959395.1| - 0.076 13.2 3.7 0.13 12.4 2.9 1.9 2 0 0 2 2 2 0 Ribosomal protein S27a RNA_POL_M_15KD PF02150.16 gi|240103086|ref|YP_002959395.1| - 0.13 12.2 3.7 0.24 11.3 3.7 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|240103086|ref|YP_002959395.1| - 0.2 11.7 1.0 0.34 11.0 1.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|240103086|ref|YP_002959395.1| - 0.29 10.7 1.4 0.59 9.7 1.4 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|240103086|ref|YP_002959395.1| - 0.93 9.5 5.7 2.1 8.4 5.7 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|240103086|ref|YP_002959395.1| - 2.3 8.2 6.0 1.7 8.5 0.4 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS MoaC PF01967.21 gi|240103088|ref|YP_002959397.1| - 6e-52 175.3 1.8 6.9e-52 175.1 1.8 1.0 1 0 0 1 1 1 1 MoaC family DUF5066 PF16728.5 gi|240103088|ref|YP_002959397.1| - 0.087 12.1 0.1 0.17 11.2 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF5066) Esterase PF00756.20 gi|240103089|ref|YP_002959398.1| - 3.4e-33 115.3 0.0 5.1e-33 114.8 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 gi|240103089|ref|YP_002959398.1| - 7.5e-05 22.3 0.1 0.00024 20.6 0.0 1.9 1 1 1 2 2 2 1 Prolyl oligopeptidase family CBM_20 PF00686.19 gi|240103089|ref|YP_002959398.1| - 0.00048 20.0 0.1 0.0011 18.8 0.1 1.6 1 0 0 1 1 1 1 Starch binding domain Hydrolase_4 PF12146.8 gi|240103089|ref|YP_002959398.1| - 0.0013 18.1 0.0 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 AMPK1_CBM PF16561.5 gi|240103089|ref|YP_002959398.1| - 0.02 15.1 0.1 0.12 12.6 0.0 2.2 2 0 0 2 2 2 0 Glycogen recognition site of AMP-activated protein kinase CBM_48 PF02922.18 gi|240103089|ref|YP_002959398.1| - 0.026 14.9 0.2 0.14 12.5 0.0 2.2 1 1 1 2 2 2 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) UPF0227 PF05728.12 gi|240103089|ref|YP_002959398.1| - 0.039 13.9 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Esterase_phd PF10503.9 gi|240103089|ref|YP_002959398.1| - 0.21 11.0 0.0 0.96 8.9 0.0 1.9 2 0 0 2 2 2 0 Esterase PHB depolymerase AAA_21 PF13304.6 gi|240103090|ref|YP_002959399.1| - 8.6e-05 22.5 0.0 0.043 13.6 0.0 2.9 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system MutS_V PF00488.21 gi|240103090|ref|YP_002959399.1| - 9.6e-05 22.5 0.0 0.00016 21.8 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_14 PF13173.6 gi|240103090|ref|YP_002959399.1| - 0.0052 16.8 0.0 0.013 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|240103090|ref|YP_002959399.1| - 0.0069 16.9 2.1 0.24 11.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|240103090|ref|YP_002959399.1| - 0.012 15.8 0.3 0.083 13.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|240103090|ref|YP_002959399.1| - 0.025 15.0 1.4 14 6.0 0.1 3.5 2 1 0 3 3 3 0 AAA ATPase domain CPT PF07931.12 gi|240103090|ref|YP_002959399.1| - 0.077 12.8 0.0 0.17 11.7 0.0 1.6 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA PF00004.29 gi|240103090|ref|YP_002959399.1| - 0.096 13.1 0.1 0.31 11.5 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MAM33 PF02330.16 gi|240103090|ref|YP_002959399.1| - 0.21 11.5 1.3 0.26 11.2 0.1 1.7 2 0 0 2 2 2 0 Mitochondrial glycoprotein MatE PF01554.18 gi|240103091|ref|YP_002959400.1| - 1.5e-71 239.2 22.4 4.9e-39 133.6 8.9 2.7 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|240103091|ref|YP_002959400.1| - 4e-08 33.4 5.5 4e-08 33.4 5.5 4.4 3 3 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain eIF-5a PF01287.20 gi|240103092|ref|YP_002959401.1| - 2.9e-10 40.1 1.3 4.4e-10 39.5 1.3 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|240103092|ref|YP_002959401.1| - 1.5e-06 28.1 0.4 3.1e-05 23.9 0.0 2.8 3 0 0 3 3 3 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|240103092|ref|YP_002959401.1| - 0.0022 18.0 0.9 0.0043 17.1 0.9 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain DUF3989 PF13150.6 gi|240103093|ref|YP_002959402.1| - 4.7 7.0 13.8 3 7.7 0.8 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3989) Metallophos_2 PF12850.7 gi|240103094|ref|YP_002959403.1| - 3.7e-19 69.5 0.0 7.2e-19 68.6 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|240103094|ref|YP_002959403.1| - 2.1e-17 64.3 0.0 3e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|240103094|ref|YP_002959403.1| - 8.9e-17 61.3 0.9 1.1e-12 47.9 0.1 2.6 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Peptidase_S9 PF00326.21 gi|240103095|ref|YP_002959404.1| - 6.5e-53 179.3 0.0 9.6e-53 178.8 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.15 gi|240103095|ref|YP_002959404.1| - 2.1e-16 59.8 0.0 4.3e-14 52.1 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase, N-terminal beta-propeller domain Hydrolase_4 PF12146.8 gi|240103095|ref|YP_002959404.1| - 0.017 14.4 0.0 0.15 11.3 0.0 2.0 2 0 0 2 2 2 0 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|240103095|ref|YP_002959404.1| - 0.071 12.7 0.0 0.92 9.0 0.0 2.1 1 1 1 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|240103095|ref|YP_002959404.1| - 0.15 11.7 0.0 0.56 9.8 0.0 1.9 1 1 0 1 1 1 0 alpha/beta hydrolase fold MatE PF01554.18 gi|240103096|ref|YP_002959405.1| - 4e-58 195.6 33.6 6e-31 107.3 11.5 2.9 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|240103096|ref|YP_002959405.1| - 5.2e-09 36.3 5.0 5.2e-09 36.3 5.0 4.9 3 3 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain DUF5413 PF17434.2 gi|240103096|ref|YP_002959405.1| - 0.011 16.1 1.3 0.011 16.1 1.3 3.3 3 1 1 4 4 4 0 Family of unknown function (DUF5413) MatE PF01554.18 gi|240103097|ref|YP_002959406.1| - 4.1e-59 198.8 29.5 4.5e-34 117.4 8.9 3.1 3 1 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|240103097|ref|YP_002959406.1| - 1.3e-09 38.3 13.5 3.4e-09 36.9 5.0 4.2 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain PIN PF01850.21 gi|240103098|ref|YP_002959407.1| - 8.2e-21 74.8 3.0 1.1e-20 74.4 3.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|240103098|ref|YP_002959407.1| - 0.036 14.6 1.1 0.042 14.3 1.1 1.2 1 0 0 1 1 1 0 PIN domain MraZ PF02381.18 gi|240103099|ref|YP_002959408.1| - 1.4e-05 25.0 0.1 2e-05 24.5 0.1 1.2 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like MazE_antitoxin PF04014.18 gi|240103099|ref|YP_002959408.1| - 4.2e-05 23.4 3.0 0.00011 22.0 3.0 1.7 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PPDK_N PF01326.19 gi|240103100|ref|YP_002959409.1| - 8.9e-117 390.0 2.3 1.4e-116 389.3 2.3 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|240103100|ref|YP_002959409.1| - 1.2e-98 329.8 0.0 2.1e-98 329.1 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|240103100|ref|YP_002959409.1| - 2.1e-28 97.8 1.8 5.5e-28 96.5 1.8 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Mod_r PF07200.13 gi|240103100|ref|YP_002959409.1| - 0.11 12.7 0.2 0.22 11.6 0.2 1.5 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Peptidase_S8 PF00082.22 gi|240103101|ref|YP_002959410.1| - 3.1e-61 207.3 0.0 4.9e-61 206.6 0.0 1.3 1 0 0 1 1 1 1 Subtilase family PCNA_N PF00705.18 gi|240103103|ref|YP_002959412.1| - 2.5e-20 72.4 0.0 3.3e-17 62.4 0.0 2.1 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain Rad1 PF02144.16 gi|240103103|ref|YP_002959412.1| - 1.5e-11 43.9 0.1 3e-07 29.8 0.0 2.0 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 PCNA_C PF02747.15 gi|240103103|ref|YP_002959412.1| - 5.7e-11 42.7 0.1 8.7e-10 38.9 0.0 2.3 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|240103103|ref|YP_002959412.1| - 0.00054 19.5 0.0 0.0015 18.0 0.0 2.0 1 1 1 2 2 2 1 Rad9 Hus1 PF04005.12 gi|240103103|ref|YP_002959412.1| - 0.14 11.3 0.0 0.4 9.7 0.0 1.8 1 1 0 1 1 1 0 Hus1-like protein FliM PF02154.15 gi|240103104|ref|YP_002959413.1| - 0.093 12.6 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Flagellar motor switch protein FliM TFIIS_C PF01096.18 gi|240103105|ref|YP_002959414.1| - 5.2e-21 74.2 13.2 6e-21 74.0 2.7 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|240103105|ref|YP_002959414.1| - 1.3e-17 63.3 16.1 2.4e-16 59.3 2.4 3.2 3 0 0 3 3 3 2 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|240103105|ref|YP_002959414.1| - 1.1e-06 28.6 11.6 0.0032 17.4 2.4 2.6 2 1 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|240103105|ref|YP_002959414.1| - 1.1e-05 25.2 7.8 0.0061 16.5 0.7 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|240103105|ref|YP_002959414.1| - 2e-05 24.0 9.1 0.02 14.4 1.3 3.0 2 1 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|240103105|ref|YP_002959414.1| - 3.7e-05 23.6 5.1 0.074 13.1 0.5 2.7 2 1 0 2 2 2 2 Double zinc ribbon PhnA_Zn_Ribbon PF08274.12 gi|240103105|ref|YP_002959414.1| - 8.3e-05 22.5 4.2 0.15 12.0 0.1 3.2 3 0 0 3 3 3 2 PhnA Zinc-Ribbon Baculo_LEF5_C PF11792.8 gi|240103105|ref|YP_002959414.1| - 0.00011 21.8 0.5 0.00011 21.8 0.5 3.3 3 1 0 3 3 3 1 Baculoviridae late expression factor 5 C-terminal domain zf-ribbon_3 PF13248.6 gi|240103105|ref|YP_002959414.1| - 0.00014 21.1 17.5 0.022 14.1 3.4 4.0 3 1 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|240103105|ref|YP_002959414.1| - 0.00052 19.9 12.4 0.43 10.5 0.1 4.2 3 1 2 5 5 5 2 zinc-ribbon domain IBR PF01485.21 gi|240103105|ref|YP_002959414.1| - 0.00065 19.9 8.2 0.084 13.1 0.7 2.9 2 1 0 2 2 2 2 IBR domain, a half RING-finger domain zinc_ribbon_2 PF13240.6 gi|240103105|ref|YP_002959414.1| - 0.00088 18.9 20.2 0.6 9.9 0.2 4.1 3 1 0 3 3 3 1 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|240103105|ref|YP_002959414.1| - 0.0012 19.0 12.3 0.61 10.3 0.1 4.0 2 2 1 3 3 3 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) UPF0547 PF10571.9 gi|240103105|ref|YP_002959414.1| - 0.0014 18.7 14.5 0.83 9.8 0.4 4.2 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|240103105|ref|YP_002959414.1| - 0.0021 18.0 14.3 0.23 11.4 0.6 4.1 2 2 0 2 2 2 1 Nudix N-terminal DUF35_N PF12172.8 gi|240103105|ref|YP_002959414.1| - 0.0033 17.3 7.2 8.2 6.4 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rpr2 PF04032.16 gi|240103105|ref|YP_002959414.1| - 0.0037 17.5 3.3 0.034 14.4 3.3 2.1 1 1 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Zn-ribbon_8 PF09723.10 gi|240103105|ref|YP_002959414.1| - 0.0042 17.2 11.1 1.9 8.6 0.1 4.2 4 0 0 4 4 4 1 Zinc ribbon domain TerY_C PF15616.6 gi|240103105|ref|YP_002959414.1| - 0.02 15.0 0.6 6.3 6.9 0.0 2.3 2 0 0 2 2 2 0 TerY-C metal binding domain Lar_restr_allev PF14354.6 gi|240103105|ref|YP_002959414.1| - 0.023 15.1 9.5 0.38 11.2 0.6 2.6 2 1 0 2 2 2 0 Restriction alleviation protein Lar DUF2387 PF09526.10 gi|240103105|ref|YP_002959414.1| - 0.029 14.5 11.7 1.1 9.5 3.3 2.6 2 2 0 2 2 2 0 Probable metal-binding protein (DUF2387) C1_1 PF00130.22 gi|240103105|ref|YP_002959414.1| - 0.042 13.7 6.7 0.35 10.8 1.2 2.5 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Auto_anti-p27 PF06677.12 gi|240103105|ref|YP_002959414.1| - 0.044 14.0 2.5 0.044 14.0 2.5 2.8 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cys_rich_CPCC PF14206.6 gi|240103105|ref|YP_002959414.1| - 0.055 13.3 0.3 0.055 13.3 0.3 2.9 3 0 0 3 3 3 0 Cysteine-rich CPCC YhfH PF14149.6 gi|240103105|ref|YP_002959414.1| - 0.055 13.4 10.7 5.4 7.1 0.1 4.2 4 0 0 4 4 4 0 YhfH-like protein zf-C4_Topoisom PF01396.19 gi|240103105|ref|YP_002959414.1| - 0.063 13.1 10.5 1.3 8.8 0.1 3.3 3 1 1 4 4 3 0 Topoisomerase DNA binding C4 zinc finger FYVE_2 PF02318.16 gi|240103105|ref|YP_002959414.1| - 0.08 13.2 5.2 0.74 10.0 0.6 2.3 1 1 1 2 2 2 0 FYVE-type zinc finger NOB1_Zn_bind PF08772.11 gi|240103105|ref|YP_002959414.1| - 0.12 12.5 14.6 0.66 10.2 0.7 3.4 2 2 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_S27e PF01667.17 gi|240103105|ref|YP_002959414.1| - 0.12 12.1 7.3 6.7 6.5 2.5 3.2 2 1 0 2 2 2 0 Ribosomal protein S27 eIF-5_eIF-2B PF01873.17 gi|240103105|ref|YP_002959414.1| - 0.14 12.0 4.1 0.36 10.7 0.2 2.2 2 0 0 2 2 2 0 Domain found in IF2B/IF5 zf_UBZ PF18439.1 gi|240103105|ref|YP_002959414.1| - 0.17 11.5 10.6 2.9 7.5 0.1 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-UBP PF02148.19 gi|240103105|ref|YP_002959414.1| - 0.17 12.3 4.4 1.2 9.5 0.2 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein A2L_zn_ribbon PF08792.10 gi|240103105|ref|YP_002959414.1| - 0.17 11.7 13.2 17 5.3 3.6 4.1 3 1 0 3 3 3 0 A2L zinc ribbon domain Terminase_GpA PF05876.12 gi|240103105|ref|YP_002959414.1| - 0.19 10.2 6.6 0.066 11.8 1.0 2.0 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) RPA_interact_C PF14768.6 gi|240103105|ref|YP_002959414.1| - 0.29 11.7 4.3 12 6.6 4.3 2.6 1 1 0 1 1 1 0 Replication protein A interacting C-terminal Rubredoxin_2 PF18073.1 gi|240103105|ref|YP_002959414.1| - 0.31 10.8 19.9 0.67 9.7 0.3 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain HypA PF01155.19 gi|240103105|ref|YP_002959414.1| - 0.33 11.0 7.4 0.92 9.5 2.9 2.8 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_1 PF14446.6 gi|240103105|ref|YP_002959414.1| - 0.47 10.4 6.1 7.3 6.6 0.4 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 RecR PF02132.15 gi|240103105|ref|YP_002959414.1| - 0.48 10.0 8.8 2.6 7.7 2.0 3.6 3 1 0 3 3 3 0 RecR protein Ribosomal_L37ae PF01780.19 gi|240103105|ref|YP_002959414.1| - 0.62 10.2 10.4 0.66 10.1 1.0 3.1 2 1 0 2 2 2 0 Ribosomal L37ae protein family zf_C2H2_10 PF18414.1 gi|240103105|ref|YP_002959414.1| - 0.63 9.6 14.6 2.1 8.0 0.4 3.9 4 0 0 4 4 4 0 C2H2 type zinc-finger zf-BED PF02892.15 gi|240103105|ref|YP_002959414.1| - 0.72 9.9 8.5 2.8 8.0 0.4 3.2 3 1 0 3 3 3 0 BED zinc finger Rubredoxin PF00301.20 gi|240103105|ref|YP_002959414.1| - 0.75 9.9 16.3 4.8 7.3 0.1 4.2 4 0 0 4 4 4 0 Rubredoxin Ribosomal_L32p PF01783.23 gi|240103105|ref|YP_002959414.1| - 0.97 9.7 9.7 1.4 9.3 1.1 3.3 3 1 0 3 3 3 0 Ribosomal L32p protein family zf-ACC PF17848.1 gi|240103105|ref|YP_002959414.1| - 1 9.5 14.3 11 6.2 0.1 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Zn_ribbon_recom PF13408.6 gi|240103105|ref|YP_002959414.1| - 1 9.9 7.5 2.8 8.5 0.3 2.6 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Prim_Zn_Ribbon PF08273.12 gi|240103105|ref|YP_002959414.1| - 1.1 9.5 12.6 6 7.2 0.1 3.3 3 1 0 3 3 3 0 Zinc-binding domain of primase-helicase VP_N-CPKC PF11475.8 gi|240103105|ref|YP_002959414.1| - 1.2 9.1 4.4 44 4.1 0.1 3.2 3 0 0 3 3 3 0 Virion protein N terminal domain Opy2 PF09463.10 gi|240103105|ref|YP_002959414.1| - 1.3 9.4 0.2 1.3 9.4 0.2 3.4 4 0 0 4 4 4 0 Opy2 protein zf-NADH-PPase PF09297.11 gi|240103105|ref|YP_002959414.1| - 1.3 8.8 13.1 1.8 8.3 4.1 3.5 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.6 gi|240103105|ref|YP_002959414.1| - 1.4 8.3 12.9 3.1 7.2 1.2 3.1 2 2 0 2 2 2 0 Transcription factor zinc-finger Ogr_Delta PF04606.12 gi|240103105|ref|YP_002959414.1| - 1.4 8.9 8.9 0.67 10.0 1.0 2.7 2 2 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RRN7 PF11781.8 gi|240103105|ref|YP_002959414.1| - 1.4 8.7 9.7 20 5.0 0.1 3.9 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ISL3 PF14690.6 gi|240103105|ref|YP_002959414.1| - 1.4 9.6 14.2 3.2 8.5 0.1 3.8 3 1 1 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-H2C2_2 PF13465.6 gi|240103105|ref|YP_002959414.1| - 1.7 9.3 14.2 7.7 7.1 0.1 4.1 4 0 0 4 4 4 0 Zinc-finger double domain zf-Mss51 PF13824.6 gi|240103105|ref|YP_002959414.1| - 1.7 8.8 13.1 2 8.6 3.1 3.5 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Mu-like_Com PF10122.9 gi|240103105|ref|YP_002959414.1| - 2 7.9 6.1 32 4.1 0.3 3.2 3 0 0 3 3 3 0 Mu-like prophage protein Com DUF3268 PF11672.8 gi|240103105|ref|YP_002959414.1| - 2.7 8.4 8.3 1.3 9.4 1.3 2.4 2 1 0 2 2 2 0 zinc-finger-containing domain zinc_ribbon_15 PF17032.5 gi|240103105|ref|YP_002959414.1| - 3.2 8.6 12.6 12 6.7 5.3 3.1 2 1 0 2 2 2 0 zinc-ribbon family zinc_ribbon_10 PF10058.9 gi|240103105|ref|YP_002959414.1| - 3.3 7.5 14.5 2.5 7.9 2.6 3.7 2 2 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein DNA_RNApol_7kD PF03604.13 gi|240103105|ref|YP_002959414.1| - 3.5 7.4 11.3 33 4.3 0.4 3.7 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit CpXC PF14353.6 gi|240103105|ref|YP_002959414.1| - 3.6 7.7 11.8 1.8 8.6 0.2 3.8 1 1 2 3 3 3 0 CpXC protein zf-tcix PF14952.6 gi|240103105|ref|YP_002959414.1| - 6.7 6.4 16.0 11 5.7 0.3 4.0 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding zf-HIT PF04438.16 gi|240103105|ref|YP_002959414.1| - 6.8 6.7 16.0 3.3 7.7 0.3 3.8 4 0 0 4 4 4 0 HIT zinc finger zf-piccolo PF05715.13 gi|240103105|ref|YP_002959414.1| - 7.6 6.8 9.5 0.88 9.8 0.5 2.9 2 1 0 2 2 2 0 Piccolo Zn-finger DUF3797 PF12677.7 gi|240103105|ref|YP_002959414.1| - 9 6.3 16.4 6.5 6.7 6.1 3.2 2 2 0 2 2 2 0 Domain of unknown function (DUF3797) DUF1610 PF07754.11 gi|240103105|ref|YP_002959414.1| - 9.7 6.3 18.1 2.2 8.3 0.4 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) Pyr_redox_2 PF07992.14 gi|240103107|ref|YP_002959416.1| - 9.7e-60 202.3 1.8 1.2e-59 202.0 1.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|240103107|ref|YP_002959416.1| - 5.2e-25 87.8 6.0 1.3e-20 73.7 2.0 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|240103107|ref|YP_002959416.1| - 3.1e-19 69.3 0.2 6.7e-19 68.2 0.0 1.7 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|240103107|ref|YP_002959416.1| - 1.7e-17 63.7 3.8 7.4e-15 55.0 0.9 2.6 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|240103107|ref|YP_002959416.1| - 5.1e-14 52.6 0.6 0.0003 20.5 0.1 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|240103107|ref|YP_002959416.1| - 1.2e-11 44.0 2.4 0.0023 16.7 0.2 4.0 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.6 gi|240103107|ref|YP_002959416.1| - 9.9e-09 35.3 0.0 0.0028 17.8 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|240103107|ref|YP_002959416.1| - 7e-08 32.7 2.5 8.8e-05 22.8 1.1 3.1 2 1 0 2 2 2 1 TrkA-N domain Lycopene_cycl PF05834.12 gi|240103107|ref|YP_002959416.1| - 1.5e-07 30.9 0.9 0.012 14.7 0.0 2.7 2 1 1 3 3 3 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|240103107|ref|YP_002959416.1| - 1.7e-07 30.7 1.7 0.11 11.6 0.0 3.3 2 1 1 3 3 3 3 FAD binding domain NAD_binding_7 PF13241.6 gi|240103107|ref|YP_002959416.1| - 4.3e-07 30.3 1.2 0.00036 20.9 0.4 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding GIDA PF01134.22 gi|240103107|ref|YP_002959416.1| - 7.1e-07 28.6 7.6 0.13 11.4 0.3 4.1 3 1 2 5 5 5 3 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|240103107|ref|YP_002959416.1| - 2.5e-06 27.5 0.6 0.62 10.0 0.0 3.8 3 1 1 4 4 4 2 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|240103107|ref|YP_002959416.1| - 4.9e-06 26.5 1.6 9.1e-06 25.7 0.4 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|240103107|ref|YP_002959416.1| - 2.6e-05 23.6 1.1 0.099 11.9 0.1 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|240103107|ref|YP_002959416.1| - 7.4e-05 22.2 0.4 0.032 13.5 0.0 2.4 2 0 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.14 gi|240103107|ref|YP_002959416.1| - 0.00014 20.9 5.0 0.084 11.7 0.1 3.1 2 1 1 3 3 3 2 Tryptophan halogenase Thi4 PF01946.17 gi|240103107|ref|YP_002959416.1| - 0.00017 21.0 0.8 0.23 10.7 0.0 2.7 3 0 0 3 3 2 2 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|240103107|ref|YP_002959416.1| - 0.00076 19.1 0.2 0.00076 19.1 0.2 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|240103107|ref|YP_002959416.1| - 0.00091 18.9 0.4 0.0023 17.6 0.1 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|240103107|ref|YP_002959416.1| - 0.001 19.3 0.2 0.0056 16.9 0.2 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|240103107|ref|YP_002959416.1| - 0.0018 17.7 0.9 0.12 11.8 0.1 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|240103107|ref|YP_002959416.1| - 0.0021 17.5 4.4 0.051 12.9 0.2 3.0 2 1 1 3 3 3 1 FAD dependent oxidoreductase F420_oxidored PF03807.17 gi|240103107|ref|YP_002959416.1| - 0.0024 18.4 1.4 0.06 13.9 0.7 2.8 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|240103107|ref|YP_002959416.1| - 0.0047 17.2 0.4 0.08 13.2 0.1 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 gi|240103107|ref|YP_002959416.1| - 0.0073 16.3 0.0 0.11 12.4 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Mqo PF06039.15 gi|240103107|ref|YP_002959416.1| - 0.019 13.6 0.0 0.074 11.6 0.0 1.8 2 0 0 2 2 2 0 Malate:quinone oxidoreductase (Mqo) adh_short PF00106.25 gi|240103107|ref|YP_002959416.1| - 0.12 11.8 0.6 0.2 11.1 0.1 1.7 2 0 0 2 2 2 0 short chain dehydrogenase Amino_oxidase PF01593.24 gi|240103107|ref|YP_002959416.1| - 0.17 11.1 0.0 6.9 5.8 0.1 2.6 2 2 0 3 3 3 0 Flavin containing amine oxidoreductase Shikimate_DH PF01488.20 gi|240103107|ref|YP_002959416.1| - 0.29 11.2 3.6 0.5 10.4 0.3 2.5 2 1 1 3 3 3 0 Shikimate / quinate 5-dehydrogenase tRNA-synt_2b PF00587.25 gi|240103108|ref|YP_002959417.1| - 1.7e-23 83.5 0.2 3.3e-23 82.6 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|240103108|ref|YP_002959417.1| - 2.1e-22 79.1 0.6 5e-22 77.9 0.6 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|240103108|ref|YP_002959417.1| - 2.7e-17 62.7 0.7 2.9e-16 59.4 1.1 2.2 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal TIR_2 PF13676.6 gi|240103108|ref|YP_002959417.1| - 0.0035 18.0 0.0 0.014 16.0 0.0 2.1 1 0 0 1 1 1 1 TIR domain ProRS-C_2 PF09181.10 gi|240103108|ref|YP_002959417.1| - 0.022 14.9 0.5 0.071 13.3 0.1 2.1 2 0 0 2 2 2 0 Prolyl-tRNA synthetase, C-terminal Rad50_zn_hook PF04423.14 gi|240103108|ref|YP_002959417.1| - 0.28 11.0 1.9 0.5 10.2 0.4 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif ATPase_2 PF01637.18 gi|240103109|ref|YP_002959418.1| - 2.2e-35 122.7 0.0 4.4e-35 121.7 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|240103109|ref|YP_002959418.1| - 4.7e-28 97.5 0.0 1e-27 96.5 0.0 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function HTH_IclR PF09339.10 gi|240103109|ref|YP_002959418.1| - 8.5e-08 31.9 0.0 1.9e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA_14 PF13173.6 gi|240103109|ref|YP_002959418.1| - 2.6e-07 30.7 0.0 7e-07 29.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240103109|ref|YP_002959418.1| - 1.5e-06 28.7 0.2 3.6e-06 27.5 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain HTH_5 PF01022.20 gi|240103109|ref|YP_002959418.1| - 1.7e-06 27.8 0.0 4.1e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family AAA_22 PF13401.6 gi|240103109|ref|YP_002959418.1| - 9.7e-05 22.7 0.0 0.0003 21.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain HTH_45 PF14947.6 gi|240103109|ref|YP_002959418.1| - 0.00054 19.9 0.0 0.0012 18.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|240103109|ref|YP_002959418.1| - 0.00067 19.5 0.1 0.0018 18.1 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|240103109|ref|YP_002959418.1| - 0.0013 18.2 0.0 0.0027 17.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 gi|240103109|ref|YP_002959418.1| - 0.0016 18.5 0.0 0.0045 17.1 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain UPF0102 PF02021.17 gi|240103109|ref|YP_002959418.1| - 0.002 18.3 0.1 0.0053 17.0 0.1 1.7 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 MarR_2 PF12802.7 gi|240103109|ref|YP_002959418.1| - 0.0021 17.9 0.0 0.0061 16.4 0.0 1.7 1 0 0 1 1 1 1 MarR family Sulfolobus_pRN PF05584.11 gi|240103109|ref|YP_002959418.1| - 0.0094 16.0 0.3 0.036 14.1 0.3 2.0 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_43 PF09904.9 gi|240103109|ref|YP_002959418.1| - 0.012 15.5 0.0 0.03 14.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_40 PF14493.6 gi|240103109|ref|YP_002959418.1| - 0.081 13.4 0.2 2.8 8.5 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain Carbam_trans_C PF16861.5 gi|240103110|ref|YP_002959419.1| - 7.6e-62 207.9 0.0 1.1e-61 207.3 0.0 1.2 1 0 0 1 1 1 1 Carbamoyltransferase C-terminus Carbam_trans_N PF02543.15 gi|240103110|ref|YP_002959419.1| - 7.6e-51 173.8 0.2 1.2e-38 133.6 0.0 2.1 1 1 1 2 2 2 2 Carbamoyltransferase N-terminus Peptidase_M22 PF00814.25 gi|240103110|ref|YP_002959419.1| - 4.9e-05 23.2 0.1 0.00085 19.1 0.0 2.2 2 0 0 2 2 2 1 Glycoprotease family DUF2283 PF10049.9 gi|240103110|ref|YP_002959419.1| - 0.064 13.5 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) BcrAD_BadFG PF01869.20 gi|240103110|ref|YP_002959419.1| - 0.16 11.5 0.2 0.7 9.3 0.1 2.0 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family GTP_EFTU PF00009.27 gi|240103111|ref|YP_002959420.1| - 1.7e-59 200.7 0.1 2.3e-59 200.2 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|240103111|ref|YP_002959420.1| - 4.4e-38 130.0 0.4 1.2e-37 128.7 0.4 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|240103111|ref|YP_002959420.1| - 1.4e-19 70.3 1.4 3.6e-18 65.7 0.5 2.7 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|240103111|ref|YP_002959420.1| - 6.8e-06 26.1 0.1 2.8e-05 24.2 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|240103111|ref|YP_002959420.1| - 0.0034 16.9 0.9 0.022 14.3 0.2 2.5 2 1 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|240103111|ref|YP_002959420.1| - 0.0076 16.2 0.7 0.17 11.8 0.2 2.4 1 1 1 2 2 2 1 RsgA GTPase Gtr1_RagA PF04670.12 gi|240103111|ref|YP_002959420.1| - 0.023 14.1 0.1 0.51 9.6 0.1 2.3 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region GTP_EFTU_D4 PF14578.6 gi|240103111|ref|YP_002959420.1| - 0.034 14.1 0.3 0.094 12.6 0.3 1.8 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Dynamin_N PF00350.23 gi|240103111|ref|YP_002959420.1| - 0.049 13.7 0.1 11 6.0 0.0 2.8 2 1 1 3 3 3 0 Dynamin family SRPRB PF09439.10 gi|240103111|ref|YP_002959420.1| - 0.077 12.4 0.5 1.1 8.6 0.5 2.5 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ribosomal_S10 PF00338.22 gi|240103112|ref|YP_002959421.1| - 1.1e-27 96.1 0.1 1.2e-27 96.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|240103112|ref|YP_002959421.1| - 0.0089 16.8 0.2 0.015 16.1 0.1 1.4 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain Aminotran_1_2 PF00155.21 gi|240103113|ref|YP_002959422.1| - 5e-41 141.1 0.0 5.9e-41 140.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|240103113|ref|YP_002959422.1| - 2.1e-14 53.2 0.0 3.1e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|240103113|ref|YP_002959422.1| - 0.0078 15.5 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Radical_SAM PF04055.21 gi|240103113|ref|YP_002959422.1| - 0.048 14.0 0.0 0.19 12.1 0.0 2.1 1 1 0 1 1 1 0 Radical SAM superfamily DegT_DnrJ_EryC1 PF01041.17 gi|240103113|ref|YP_002959422.1| - 0.18 11.1 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Peptidase_C26 PF07722.13 gi|240103114|ref|YP_002959423.1| - 5.9e-48 163.5 0.0 7.2e-48 163.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.28 gi|240103114|ref|YP_002959423.1| - 1.7e-07 31.2 0.0 3.2e-07 30.3 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Radical_SAM PF04055.21 gi|240103115|ref|YP_002959424.1| - 5.9e-17 62.5 0.2 1e-16 61.8 0.2 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|240103115|ref|YP_002959424.1| - 1e-06 28.7 4.3 0.012 15.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1848) OsmC PF02566.19 gi|240103116|ref|YP_002959425.1| - 1.1e-16 61.2 0.0 1.3e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein MarC PF01914.17 gi|240103117|ref|YP_002959426.1| - 2.1e-59 200.3 12.5 2.5e-59 200.1 12.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF368 PF04018.13 gi|240103117|ref|YP_002959426.1| - 0.13 11.8 11.4 0.25 10.9 11.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF368) DUF3754 PF12576.8 gi|240103117|ref|YP_002959426.1| - 5.5 6.9 7.0 3.4 7.6 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3754) DUF1884 PF08967.10 gi|240103121|ref|YP_002959430.1| - 2.6e-38 130.1 1.3 3e-38 129.9 1.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1884) CitG PF01874.16 gi|240103122|ref|YP_002959431.1| - 1.2e-42 146.5 0.0 1.4e-42 146.3 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase PspC PF04024.12 gi|240103123|ref|YP_002959432.1| - 1.5e-20 72.7 0.3 1.5e-20 72.7 0.3 2.3 2 0 0 2 2 2 1 PspC domain SUR7 PF06687.12 gi|240103123|ref|YP_002959432.1| - 1.1 8.9 5.8 0.29 10.8 2.5 1.6 1 1 1 2 2 2 0 SUR7/PalI family DUF2226 PF09987.9 gi|240103124|ref|YP_002959433.1| - 0.036 13.4 0.1 0.041 13.2 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2226) Peptidase_C92 PF05708.12 gi|240103125|ref|YP_002959434.1| - 1.3e-25 90.5 0.0 2.5e-25 89.5 0.0 1.5 1 1 0 1 1 1 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family DJ-1_PfpI PF01965.24 gi|240103126|ref|YP_002959435.1| - 8.3e-59 198.1 0.0 9.2e-59 197.9 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|240103126|ref|YP_002959435.1| - 0.00054 19.8 0.0 0.00061 19.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Catalase_C PF18011.1 gi|240103126|ref|YP_002959435.1| - 0.0063 16.2 0.0 0.0091 15.6 0.0 1.2 1 0 0 1 1 1 1 C-terminal domain found in long catalases GATase_3 PF07685.14 gi|240103126|ref|YP_002959435.1| - 0.016 14.8 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|240103126|ref|YP_002959435.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.5 1 1 0 1 1 1 0 Peptidase C26 FumaraseC_C PF10415.9 gi|240103126|ref|YP_002959435.1| - 0.2 12.1 0.2 1.3 9.5 0.0 2.2 2 1 0 2 2 2 0 Fumarase C C-terminus tRNA-synt_1b PF00579.25 gi|240103127|ref|YP_002959436.1| - 3.7e-44 151.2 0.1 6.8e-44 150.3 0.1 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF3232 PF11554.8 gi|240103127|ref|YP_002959436.1| - 0.11 12.8 0.1 16 5.9 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3232) HTH_24 PF13412.6 gi|240103128|ref|YP_002959437.1| - 2.5e-14 52.6 0.6 4.1e-14 51.9 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|240103128|ref|YP_002959437.1| - 1e-13 50.8 0.2 1.7e-13 50.2 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|240103128|ref|YP_002959437.1| - 3.1e-09 36.7 0.1 2.5e-08 33.8 0.0 2.2 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|240103128|ref|YP_002959437.1| - 3.3e-07 30.2 0.2 6.1e-07 29.3 0.2 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|240103128|ref|YP_002959437.1| - 1.1e-06 28.5 0.0 2.3e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|240103128|ref|YP_002959437.1| - 3e-06 27.1 0.1 5.7e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|240103128|ref|YP_002959437.1| - 1.4e-05 25.0 0.1 2.5e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.11 gi|240103128|ref|YP_002959437.1| - 2.7e-05 24.1 0.0 4.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.10 gi|240103128|ref|YP_002959437.1| - 0.0001 22.1 0.1 0.0002 21.1 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 gi|240103128|ref|YP_002959437.1| - 0.00029 20.3 0.5 0.00067 19.1 0.4 1.6 1 1 1 2 2 2 1 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|240103128|ref|YP_002959437.1| - 0.00043 20.0 0.0 0.001 18.8 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_38 PF13936.6 gi|240103128|ref|YP_002959437.1| - 0.00095 18.9 0.2 0.0016 18.2 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|240103128|ref|YP_002959437.1| - 0.0019 18.2 0.1 0.0055 16.7 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|240103128|ref|YP_002959437.1| - 0.01 15.9 0.0 0.022 14.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|240103128|ref|YP_002959437.1| - 0.019 15.1 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Fe_dep_repress PF01325.19 gi|240103128|ref|YP_002959437.1| - 0.02 15.1 0.0 0.048 13.9 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|240103128|ref|YP_002959437.1| - 0.027 14.3 0.1 0.042 13.7 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GYD PF08734.11 gi|240103128|ref|YP_002959437.1| - 0.038 13.9 0.0 0.075 13.0 0.0 1.5 1 0 0 1 1 1 0 GYD domain Sigma70_r4_2 PF08281.12 gi|240103128|ref|YP_002959437.1| - 0.067 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|240103128|ref|YP_002959437.1| - 0.072 12.9 0.1 0.21 11.4 0.1 1.8 1 1 0 1 1 1 0 LexA DNA binding domain HTH_3 PF01381.22 gi|240103128|ref|YP_002959437.1| - 0.075 13.1 0.1 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix TrmB PF01978.19 gi|240103128|ref|YP_002959437.1| - 0.076 12.9 0.0 0.33 10.9 0.0 2.0 3 0 0 3 3 2 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|240103128|ref|YP_002959437.1| - 0.077 13.5 0.0 0.15 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_39 PF14090.6 gi|240103128|ref|YP_002959437.1| - 0.087 12.6 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain E3_UFM1_ligase PF09743.9 gi|240103128|ref|YP_002959437.1| - 0.089 12.4 0.0 0.19 11.3 0.0 1.5 2 0 0 2 2 2 0 E3 UFM1-protein ligase 1 HTH_30 PF13556.6 gi|240103128|ref|YP_002959437.1| - 0.12 12.2 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_WhiA PF02650.14 gi|240103128|ref|YP_002959437.1| - 0.13 12.6 0.1 0.23 11.8 0.1 1.5 1 0 0 1 1 1 0 WhiA C-terminal HTH domain DDRGK PF09756.9 gi|240103128|ref|YP_002959437.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain HAD_2 PF13419.6 gi|240103129|ref|YP_002959438.1| - 3.4e-26 92.4 0.0 1e-25 90.9 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Glycos_transf_2 PF00535.26 gi|240103129|ref|YP_002959438.1| - 7.8e-25 87.6 0.0 1.3e-24 86.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Hydrolase PF00702.26 gi|240103129|ref|YP_002959438.1| - 2.1e-16 60.9 0.2 3.4e-13 50.4 0.0 2.8 2 1 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|240103129|ref|YP_002959438.1| - 1.1e-11 45.4 0.0 5.2e-10 40.0 0.0 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|240103129|ref|YP_002959438.1| - 1.8e-07 31.1 0.0 6.3e-07 29.4 0.0 2.0 1 0 0 1 1 1 1 HAD-hyrolase-like Glyco_tranf_2_3 PF13641.6 gi|240103129|ref|YP_002959438.1| - 1.2e-05 25.4 0.1 2.4e-05 24.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|240103129|ref|YP_002959438.1| - 0.00057 20.4 0.0 0.0013 19.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Hydrolase_6 PF13344.6 gi|240103129|ref|YP_002959438.1| - 0.00066 19.7 0.0 0.044 13.9 0.0 3.3 4 1 0 4 4 4 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|240103129|ref|YP_002959438.1| - 0.049 13.1 0.0 2.2 7.7 0.0 2.8 3 0 0 3 3 3 0 Sucrose-6F-phosphate phosphohydrolase Acid_phosphat_B PF03767.14 gi|240103129|ref|YP_002959438.1| - 0.15 11.7 0.0 3.2 7.3 0.0 2.2 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) DUF2304 PF10066.9 gi|240103130|ref|YP_002959439.1| - 1.4e-23 83.2 5.2 1.7e-23 82.9 5.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) Apq12 PF12716.7 gi|240103130|ref|YP_002959439.1| - 0.0097 15.8 5.7 0.0097 15.8 5.7 2.0 2 0 0 2 2 2 1 Nuclear pore assembly and biogenesis EptA_B_N PF08019.12 gi|240103130|ref|YP_002959439.1| - 0.035 14.0 0.7 0.035 14.0 0.7 1.7 1 1 1 2 2 2 0 Phosphoethanolamine transferase EptA/EptB ABC2_membrane_5 PF13346.6 gi|240103130|ref|YP_002959439.1| - 0.07 12.7 5.5 0.083 12.4 5.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Matrilin_ccoil PF10393.9 gi|240103130|ref|YP_002959439.1| - 0.21 11.5 3.7 0.4 10.6 3.7 1.5 1 1 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF2976 PF11190.8 gi|240103130|ref|YP_002959439.1| - 0.21 11.4 5.4 0.79 9.6 2.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) DUF948 PF06103.11 gi|240103130|ref|YP_002959439.1| - 0.51 10.6 0.2 0.51 10.6 0.2 2.6 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) dCMP_cyt_deam_1 PF00383.23 gi|240103131|ref|YP_002959440.1| - 2.2e-29 101.3 0.2 3.1e-29 100.8 0.2 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|240103131|ref|YP_002959440.1| - 1.5e-20 73.4 0.0 1.9e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|240103131|ref|YP_002959440.1| - 0.0067 16.5 0.1 0.013 15.5 0.1 1.4 1 1 0 1 1 1 1 Bd3614-like deaminase APOBEC3 PF18771.1 gi|240103131|ref|YP_002959440.1| - 0.056 13.6 0.0 0.13 12.4 0.0 1.4 1 1 0 1 1 1 0 APOBEC3 Peptidase_M48 PF01435.18 gi|240103132|ref|YP_002959441.1| - 3.3e-23 82.5 0.0 4.2e-23 82.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|240103132|ref|YP_002959441.1| - 4.7e-07 29.3 0.1 6.6e-07 28.8 0.1 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 Zn_peptidase_2 PF04298.12 gi|240103132|ref|YP_002959441.1| - 0.0011 18.4 1.6 0.0022 17.4 0.7 2.0 1 1 0 1 1 1 1 Putative neutral zinc metallopeptidase ATP1G1_PLM_MAT8 PF02038.16 gi|240103132|ref|YP_002959441.1| - 0.055 12.9 0.9 0.13 11.7 0.9 1.6 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family Penicillinase_R PF03965.16 gi|240103133|ref|YP_002959442.1| - 8e-17 61.6 0.1 9.5e-17 61.4 0.1 1.1 1 0 0 1 1 1 1 Penicillinase repressor PPR_2 PF13041.6 gi|240103133|ref|YP_002959442.1| - 0.0047 17.1 0.1 0.0082 16.3 0.1 1.4 1 0 0 1 1 1 1 PPR repeat family Replic_Relax PF13814.6 gi|240103133|ref|YP_002959442.1| - 0.0061 16.6 0.0 0.0095 16.0 0.0 1.4 2 0 0 2 2 2 1 Replication-relaxation FUR PF01475.19 gi|240103133|ref|YP_002959442.1| - 0.0089 16.2 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HxlR PF01638.17 gi|240103133|ref|YP_002959442.1| - 0.027 14.3 0.2 0.13 12.2 0.1 1.8 1 1 1 2 2 2 0 HxlR-like helix-turn-helix FliM PF02154.15 gi|240103133|ref|YP_002959442.1| - 0.055 13.3 0.3 2.3 8.1 0.0 2.0 1 1 1 2 2 2 0 Flagellar motor switch protein FliM GPP34 PF05719.11 gi|240103133|ref|YP_002959442.1| - 0.062 13.3 0.0 0.066 13.2 0.0 1.1 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) Aminotran_1_2 PF00155.21 gi|240103134|ref|YP_002959443.1| - 9.2e-61 206.0 0.0 1e-60 205.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|240103134|ref|YP_002959443.1| - 1.5e-07 31.1 0.0 6.7e-07 28.9 0.0 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|240103134|ref|YP_002959443.1| - 8.3e-05 21.7 0.0 0.0033 16.4 0.0 2.6 2 1 1 3 3 3 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|240103134|ref|YP_002959443.1| - 0.00038 19.8 0.0 0.00066 19.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase GPI PF06560.11 gi|240103135|ref|YP_002959444.1| - 1.3e-40 138.6 0.1 1.6e-40 138.3 0.1 1.0 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|240103135|ref|YP_002959444.1| - 1.3e-09 37.6 0.1 2.6e-09 36.6 0.1 1.6 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|240103135|ref|YP_002959444.1| - 6.9e-06 25.7 0.0 1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|240103135|ref|YP_002959444.1| - 0.0033 17.1 0.1 0.0071 16.0 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|240103135|ref|YP_002959444.1| - 0.0048 16.5 0.1 0.0069 16.1 0.1 1.2 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase DUF3368 PF11848.8 gi|240103135|ref|YP_002959444.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3368) Peptidase_M50 PF02163.22 gi|240103136|ref|YP_002959445.1| - 1e-09 38.1 6.2 2.3e-06 27.1 0.3 3.0 2 1 1 3 3 3 3 Peptidase family M50 DUF4730 PF15873.5 gi|240103136|ref|YP_002959445.1| - 0.27 11.5 2.8 2.5 8.4 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4730) ASFV_L11L PF05293.11 gi|240103136|ref|YP_002959445.1| - 0.29 11.5 2.6 1.3 9.4 1.0 2.3 2 0 0 2 2 2 0 African swine fever virus (ASFV) L11L protein KH_2 PF07650.17 gi|240103137|ref|YP_002959446.1| - 0.00039 20.2 0.4 0.00049 19.9 0.4 1.2 1 0 0 1 1 1 1 KH domain KH_7 PF17214.3 gi|240103137|ref|YP_002959446.1| - 0.01 15.8 1.1 0.012 15.5 1.1 1.3 1 1 0 1 1 1 0 KH domain TraB PF01963.17 gi|240103138|ref|YP_002959447.1| - 3.3e-15 56.7 0.0 1.5e-06 28.4 0.0 2.0 2 0 0 2 2 2 2 TraB family Lactamase_B_2 PF12706.7 gi|240103139|ref|YP_002959448.1| - 1.6e-19 70.3 0.0 5.9e-09 35.7 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|240103139|ref|YP_002959448.1| - 1.2e-10 41.8 0.3 7.9e-10 39.1 0.3 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|240103139|ref|YP_002959448.1| - 3.7e-07 29.7 0.0 8.5e-07 28.6 0.0 1.5 1 0 0 1 1 1 1 tRNase Z endonuclease LEM PF03020.15 gi|240103139|ref|YP_002959448.1| - 0.086 12.4 0.1 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 LEM domain Fer4 PF00037.27 gi|240103140|ref|YP_002959449.1| - 5.9e-10 38.5 8.3 2.1e-07 30.5 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240103140|ref|YP_002959449.1| - 1.4e-08 35.2 1.6 5.6e-05 23.6 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240103140|ref|YP_002959449.1| - 3.2e-08 33.6 0.3 0.00092 19.3 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|240103140|ref|YP_002959449.1| - 2.5e-07 30.5 7.9 4e-05 23.5 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|240103140|ref|YP_002959449.1| - 4.2e-07 30.8 0.6 0.00022 22.1 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|240103140|ref|YP_002959449.1| - 8e-07 29.1 1.6 1.9e-06 27.9 1.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240103140|ref|YP_002959449.1| - 0.00037 20.4 10.6 0.0016 18.4 4.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240103140|ref|YP_002959449.1| - 0.00091 19.3 3.4 0.096 12.8 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|240103140|ref|YP_002959449.1| - 0.0036 18.1 11.3 0.087 13.8 4.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240103140|ref|YP_002959449.1| - 0.026 15.0 6.0 0.3 11.7 2.2 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|240103140|ref|YP_002959449.1| - 0.037 14.2 0.9 0.93 9.7 0.5 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240103140|ref|YP_002959449.1| - 0.083 13.4 12.0 0.59 10.8 4.8 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|240103140|ref|YP_002959449.1| - 0.12 12.8 7.8 0.97 9.9 3.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain TPR_12 PF13424.6 gi|240103141|ref|YP_002959450.1| - 1.7e-09 37.8 8.6 8.3e-07 29.2 2.6 3.2 1 1 1 3 3 3 3 Tetratricopeptide repeat RPN7 PF10602.9 gi|240103141|ref|YP_002959450.1| - 2.4e-07 30.7 1.1 2.4e-07 30.7 1.1 1.7 2 0 0 2 2 2 1 26S proteasome subunit RPN7 TPR_6 PF13174.6 gi|240103141|ref|YP_002959450.1| - 0.0001 22.7 10.9 0.31 11.8 0.6 4.6 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|240103141|ref|YP_002959450.1| - 0.0024 17.3 0.6 0.0044 16.4 0.6 1.5 1 0 0 1 1 1 1 MalT-like TPR region TPR_8 PF13181.6 gi|240103141|ref|YP_002959450.1| - 0.0053 16.9 21.3 0.007 16.5 2.4 5.2 5 1 0 5 5 4 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|240103141|ref|YP_002959450.1| - 0.011 15.8 18.2 0.013 15.6 3.3 4.7 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|240103141|ref|YP_002959450.1| - 0.022 14.6 16.2 0.029 14.2 2.8 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat Utp13 PF08625.11 gi|240103141|ref|YP_002959450.1| - 0.053 13.4 0.3 1.8 8.5 0.1 2.4 2 1 0 2 2 2 0 Utp13 specific WD40 associated domain TPR_19 PF14559.6 gi|240103141|ref|YP_002959450.1| - 0.067 13.7 10.3 1.3 9.6 2.3 3.8 4 1 0 4 4 4 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|240103141|ref|YP_002959450.1| - 0.071 14.0 9.8 5 8.2 0.3 5.3 5 1 1 6 6 5 0 Tetratricopeptide repeat MecA_N PF05223.11 gi|240103141|ref|YP_002959450.1| - 0.16 12.2 1.6 1 9.6 0.7 2.4 2 0 0 2 2 2 0 NTF2-like N-terminal transpeptidase domain TPR_7 PF13176.6 gi|240103141|ref|YP_002959450.1| - 0.32 11.1 11.2 0.27 11.3 0.6 3.8 4 0 0 4 4 3 0 Tetratricopeptide repeat Sda PF08970.10 gi|240103141|ref|YP_002959450.1| - 0.46 10.3 9.2 1.7 8.5 1.2 3.5 3 1 0 3 3 3 0 Sporulation inhibitor A DUF447 PF04289.12 gi|240103142|ref|YP_002959451.1| - 2.5e-27 95.8 0.0 3.1e-27 95.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) ABC_tran PF00005.27 gi|240103143|ref|YP_002959452.1| - 2.8e-36 125.1 0.0 4.5e-36 124.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103143|ref|YP_002959452.1| - 2.5e-07 30.8 0.3 0.0066 16.3 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|240103143|ref|YP_002959452.1| - 3e-06 27.3 0.1 3.6e-05 23.9 0.0 2.7 3 0 0 3 3 3 1 TOBE domain Rad17 PF03215.15 gi|240103143|ref|YP_002959452.1| - 0.00083 19.3 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_25 PF13481.6 gi|240103143|ref|YP_002959452.1| - 0.0031 17.1 0.0 0.17 11.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|240103143|ref|YP_002959452.1| - 0.039 13.9 0.1 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase VirE PF05272.11 gi|240103143|ref|YP_002959452.1| - 0.051 13.3 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Virulence-associated protein E AAA_22 PF13401.6 gi|240103143|ref|YP_002959452.1| - 0.055 13.7 1.1 0.52 10.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|240103143|ref|YP_002959452.1| - 0.057 13.7 0.1 0.87 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|240103143|ref|YP_002959452.1| - 0.062 13.0 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|240103143|ref|YP_002959452.1| - 0.09 13.2 0.0 0.62 10.5 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|240103143|ref|YP_002959452.1| - 0.16 12.4 0.0 0.31 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|240103144|ref|YP_002959453.1| - 1.8e-25 89.8 39.3 4.3e-16 59.2 16.9 4.0 3 2 2 5 5 5 2 Binding-protein-dependent transport system inner membrane component DUF4481 PF14800.6 gi|240103144|ref|YP_002959453.1| - 0.009 15.5 0.2 0.018 14.5 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4481) SBP_bac_8 PF13416.6 gi|240103145|ref|YP_002959454.1| - 5.8e-21 75.5 0.6 5.8e-21 75.5 0.6 2.5 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|240103145|ref|YP_002959454.1| - 4.7e-18 66.2 1.7 9.1e-18 65.3 1.7 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|240103145|ref|YP_002959454.1| - 1.2e-16 60.8 0.2 2.4e-16 59.9 0.2 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|240103145|ref|YP_002959454.1| - 5.9e-05 22.9 2.1 0.00053 19.8 0.0 2.9 2 1 1 3 3 3 1 Bacterial extracellular solute-binding protein BBS2_C PF14782.6 gi|240103145|ref|YP_002959454.1| - 0.76 8.5 6.2 0.67 8.6 3.8 1.9 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, C-terminal ABC_tran PF00005.27 gi|240103146|ref|YP_002959455.1| - 9.2e-29 100.7 0.0 1.6e-28 99.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103146|ref|YP_002959455.1| - 2.5e-13 50.5 0.3 1.9e-06 27.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240103146|ref|YP_002959455.1| - 7.1e-07 28.9 0.0 1.1e-05 25.0 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|240103146|ref|YP_002959455.1| - 0.00036 21.1 0.1 0.0008 20.0 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|240103146|ref|YP_002959455.1| - 0.001 18.8 0.0 0.0014 18.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240103146|ref|YP_002959455.1| - 0.0016 18.8 0.1 0.0025 18.2 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|240103146|ref|YP_002959455.1| - 0.0017 18.3 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|240103146|ref|YP_002959455.1| - 0.0018 18.7 1.9 0.046 14.2 1.9 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|240103146|ref|YP_002959455.1| - 0.0018 17.0 0.1 0.15 10.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|240103146|ref|YP_002959455.1| - 0.0023 17.6 0.1 0.0048 16.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|240103146|ref|YP_002959455.1| - 0.0048 17.2 0.4 0.025 14.9 0.4 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|240103146|ref|YP_002959455.1| - 0.0067 16.2 0.2 1.3 8.7 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.12 gi|240103146|ref|YP_002959455.1| - 0.011 15.6 0.1 0.026 14.4 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_15 PF13175.6 gi|240103146|ref|YP_002959455.1| - 0.016 15.0 0.0 0.23 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 gi|240103146|ref|YP_002959455.1| - 0.016 14.8 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|240103146|ref|YP_002959455.1| - 0.022 15.0 0.2 0.44 10.8 0.1 2.6 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.8 gi|240103146|ref|YP_002959455.1| - 0.029 11.9 0.1 0.036 11.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_25 PF13481.6 gi|240103146|ref|YP_002959455.1| - 0.031 13.9 0.5 0.24 10.9 0.5 2.1 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|240103146|ref|YP_002959455.1| - 0.034 14.1 0.1 0.059 13.4 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE G-alpha PF00503.20 gi|240103146|ref|YP_002959455.1| - 0.052 12.7 0.0 0.052 12.7 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit ATPase_2 PF01637.18 gi|240103146|ref|YP_002959455.1| - 0.064 13.2 0.1 0.6 10.0 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|240103146|ref|YP_002959455.1| - 0.079 13.0 0.1 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|240103146|ref|YP_002959455.1| - 0.086 12.4 0.3 0.16 11.6 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|240103146|ref|YP_002959455.1| - 0.088 12.8 0.0 1.2 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|240103146|ref|YP_002959455.1| - 0.092 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.6 gi|240103146|ref|YP_002959455.1| - 0.12 12.6 0.0 0.33 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|240103146|ref|YP_002959455.1| - 0.13 11.9 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PduV-EutP PF10662.9 gi|240103146|ref|YP_002959455.1| - 0.13 12.0 0.1 0.25 11.1 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DLIC PF05783.11 gi|240103146|ref|YP_002959455.1| - 0.14 11.0 0.0 0.24 10.2 0.0 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_24 PF13479.6 gi|240103146|ref|YP_002959455.1| - 0.19 11.4 0.1 0.36 10.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain ABC-3 PF00950.17 gi|240103147|ref|YP_002959456.1| - 5.7e-28 98.1 33.3 7e-28 97.8 33.3 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|240103147|ref|YP_002959456.1| - 0.00011 21.3 32.1 0.00011 21.3 32.1 1.3 1 1 0 1 1 1 1 FecCD transport family RNase_HII PF01351.18 gi|240103148|ref|YP_002959457.1| - 2.7e-51 174.2 0.0 3.2e-51 174.0 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII GT87 PF09594.10 gi|240103149|ref|YP_002959458.1| - 0.0042 16.8 20.9 0.0042 16.8 20.9 2.7 3 0 0 3 3 3 1 Glycosyltransferase family 87 DUF3290 PF11694.8 gi|240103149|ref|YP_002959458.1| - 0.061 13.3 1.7 0.092 12.7 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) Methyltransf_25 PF13649.6 gi|240103150|ref|YP_002959459.1| - 2.3e-08 34.7 0.0 1.7e-06 28.6 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|240103150|ref|YP_002959459.1| - 7.1e-08 32.4 0.0 1.4e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|240103150|ref|YP_002959459.1| - 6.9e-07 29.0 0.0 1.1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 gi|240103150|ref|YP_002959459.1| - 4.5e-05 24.0 0.0 0.0014 19.2 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|240103150|ref|YP_002959459.1| - 0.00019 20.9 0.0 0.00028 20.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|240103150|ref|YP_002959459.1| - 0.0016 18.0 0.0 0.0037 16.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Thump_like PF18096.1 gi|240103150|ref|YP_002959459.1| - 0.0042 17.0 0.7 0.0091 15.9 0.2 1.9 2 0 0 2 2 2 1 THUMP domain-like Methyltransf_12 PF08242.12 gi|240103150|ref|YP_002959459.1| - 0.0064 17.2 0.0 0.16 12.7 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240103150|ref|YP_002959459.1| - 0.0089 15.9 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|240103150|ref|YP_002959459.1| - 0.017 14.9 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|240103150|ref|YP_002959459.1| - 0.056 13.4 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|240103150|ref|YP_002959459.1| - 0.086 12.5 0.0 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 AdoMet_MTase PF07757.13 gi|240103150|ref|YP_002959459.1| - 0.14 12.5 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Peptidase_M24 PF00557.24 gi|240103152|ref|YP_002959461.1| - 9.8e-71 237.7 1.2 1.5e-70 237.1 1.2 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|240103152|ref|YP_002959461.1| - 1.5e-24 87.1 0.0 2.5e-24 86.4 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain PIN_6 PF17146.4 gi|240103152|ref|YP_002959461.1| - 0.077 13.5 0.3 0.22 12.1 0.3 1.8 1 0 0 1 1 1 0 PIN domain of ribonuclease DUF3450 PF11932.8 gi|240103153|ref|YP_002959462.1| - 0.0022 17.4 0.8 0.0023 17.3 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Laminin_II PF06009.12 gi|240103153|ref|YP_002959462.1| - 0.0034 17.4 0.2 0.0038 17.2 0.2 1.0 1 0 0 1 1 1 1 Laminin Domain II Tmemb_cc2 PF10267.9 gi|240103153|ref|YP_002959462.1| - 0.0076 15.4 3.7 0.0077 15.4 3.7 1.0 1 0 0 1 1 1 1 Predicted transmembrane and coiled-coil 2 protein DASH_Dad3 PF08656.10 gi|240103153|ref|YP_002959462.1| - 0.0078 16.3 0.6 0.01 15.9 0.6 1.2 1 0 0 1 1 1 1 DASH complex subunit Dad3 Ntox1 PF15500.6 gi|240103153|ref|YP_002959462.1| - 0.013 15.8 0.2 0.016 15.6 0.2 1.1 1 0 0 1 1 1 0 Putative RNase-like toxin, toxin_1 Spc7 PF08317.11 gi|240103153|ref|YP_002959462.1| - 0.014 14.3 2.3 0.015 14.2 2.3 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein RPW8 PF05659.11 gi|240103153|ref|YP_002959462.1| - 0.015 14.9 0.6 0.018 14.8 0.6 1.1 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 OmpH PF03938.14 gi|240103153|ref|YP_002959462.1| - 0.016 15.5 0.8 0.017 15.4 0.8 1.0 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF885 PF05960.11 gi|240103153|ref|YP_002959462.1| - 0.025 14.3 0.4 0.025 14.2 0.4 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) CENP-F_leu_zip PF10473.9 gi|240103153|ref|YP_002959462.1| - 0.035 14.1 5.9 0.039 14.0 5.9 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 IDH PF03971.14 gi|240103153|ref|YP_002959462.1| - 0.058 11.8 0.1 0.058 11.8 0.1 1.0 1 0 0 1 1 1 0 Monomeric isocitrate dehydrogenase COMM_domain PF07258.14 gi|240103153|ref|YP_002959462.1| - 0.087 13.0 3.7 0.95 9.6 0.1 2.3 1 1 1 2 2 2 0 COMM domain Bcr-Abl_Oligo PF09036.10 gi|240103153|ref|YP_002959462.1| - 0.58 10.2 3.3 3.7 7.6 0.4 2.0 2 0 0 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain ParE_toxin PF05016.15 gi|240103154|ref|YP_002959463.1| - 9.1e-12 45.4 0.3 1.2e-11 45.1 0.3 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|240103154|ref|YP_002959463.1| - 7.3e-07 29.1 0.0 9.7e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system Gp49 PF05973.14 gi|240103154|ref|YP_002959463.1| - 0.0057 16.8 0.0 0.007 16.5 0.0 1.2 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) SPOR PF05036.13 gi|240103154|ref|YP_002959463.1| - 0.054 13.9 3.3 3.4 8.1 0.7 2.8 1 1 1 2 2 2 0 Sporulation related domain eRF1_1 PF03463.15 gi|240103155|ref|YP_002959464.1| - 1.1e-29 103.0 0.1 1.9e-29 102.3 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|240103155|ref|YP_002959464.1| - 5.5e-26 91.3 1.0 1.7e-25 89.7 1.0 1.9 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|240103155|ref|YP_002959464.1| - 6.4e-17 62.1 0.2 1.3e-16 61.1 0.2 1.6 1 0 0 1 1 1 1 eRF1 domain 2 baeRF_family10 PF18854.1 gi|240103155|ref|YP_002959464.1| - 9.4e-05 22.7 0.3 0.00036 20.8 0.3 2.1 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 baeRF_family12 PF18856.1 gi|240103155|ref|YP_002959464.1| - 0.00024 21.7 2.3 0.0011 19.6 0.7 2.5 1 1 1 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 12 baeRF_family5 PF18846.1 gi|240103155|ref|YP_002959464.1| - 0.0012 19.0 0.1 0.0033 17.6 0.1 1.7 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 5 Host_attach PF10116.9 gi|240103155|ref|YP_002959464.1| - 0.0025 18.4 0.3 0.0078 16.8 0.1 1.9 1 1 1 2 2 2 1 Protein required for attachment to host cells DDE_Tnp_ISL3 PF01610.17 gi|240103155|ref|YP_002959464.1| - 0.055 13.2 0.7 0.13 11.9 0.1 1.9 2 1 0 2 2 2 0 Transposase Arg_tRNA_synt_N PF03485.16 gi|240103155|ref|YP_002959464.1| - 0.15 12.7 0.0 0.64 10.6 0.0 2.1 1 0 0 1 1 1 0 Arginyl tRNA synthetase N terminal domain HEPN PF05168.14 gi|240103156|ref|YP_002959465.1| - 3e-32 111.2 1.5 3.4e-32 111.0 1.5 1.0 1 0 0 1 1 1 1 HEPN domain Fer4_15 PF13459.6 gi|240103156|ref|YP_002959465.1| - 0.15 12.9 0.1 0.5 11.1 0.1 1.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain FTCD_C PF04961.12 gi|240103156|ref|YP_002959465.1| - 0.15 11.8 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase NTP_transf_2 PF01909.23 gi|240103157|ref|YP_002959466.1| - 2.5e-13 50.1 0.6 2.8e-13 50.0 0.6 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|240103157|ref|YP_002959466.1| - 7.8e-10 38.7 0.1 9.6e-10 38.4 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|240103157|ref|YP_002959466.1| - 0.031 14.1 0.0 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 AIRS_C PF02769.22 gi|240103158|ref|YP_002959467.1| - 4.2e-15 56.2 0.0 7.8e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|240103158|ref|YP_002959467.1| - 2.3e-13 50.6 0.1 6.1e-13 49.2 0.1 1.6 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain QueC PF06508.13 gi|240103159|ref|YP_002959468.1| - 1.8e-08 34.2 0.0 1.2e-07 31.5 0.0 2.2 2 1 1 3 3 3 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|240103159|ref|YP_002959468.1| - 4.3e-08 33.0 0.0 1.3e-07 31.4 0.0 1.8 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|240103159|ref|YP_002959468.1| - 1.7e-05 25.0 0.0 0.00028 21.0 0.0 2.2 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|240103159|ref|YP_002959468.1| - 8.2e-05 22.4 0.0 0.00037 20.3 0.0 2.0 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|240103159|ref|YP_002959468.1| - 0.00012 21.0 0.0 0.00028 19.8 0.0 1.6 2 0 0 2 2 2 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|240103159|ref|YP_002959468.1| - 0.0011 18.2 0.0 0.0017 17.5 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|240103159|ref|YP_002959468.1| - 0.0044 16.7 0.0 0.0081 15.9 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase Diphthami_syn_2 PF01902.17 gi|240103159|ref|YP_002959468.1| - 0.025 14.1 0.0 0.059 12.9 0.0 1.6 2 0 0 2 2 2 0 Diphthamide synthase GPDPase_memb PF10110.9 gi|240103160|ref|YP_002959469.1| - 1.1e-07 31.0 13.6 9.1e-06 24.7 14.2 2.1 1 1 1 2 2 2 2 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.11 gi|240103160|ref|YP_002959469.1| - 5.3e-06 26.4 12.0 7e-06 26.0 12.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0259) EI24 PF07264.11 gi|240103160|ref|YP_002959469.1| - 0.0032 17.7 13.7 0.0047 17.2 13.7 1.2 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) DUF975 PF06161.11 gi|240103160|ref|YP_002959469.1| - 0.18 11.6 19.8 0.41 10.4 19.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF975) DUF4013 PF13197.6 gi|240103160|ref|YP_002959469.1| - 0.71 9.7 28.4 0.97 9.3 18.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF4013) PIG-Y PF15159.6 gi|240103160|ref|YP_002959469.1| - 3.3 8.7 9.5 9.5 7.2 6.6 2.9 2 1 1 3 3 3 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y Yip1 PF04893.17 gi|240103160|ref|YP_002959469.1| - 6.4 6.5 24.8 20 4.8 24.8 1.7 1 1 0 1 1 1 0 Yip1 domain FeoA PF04023.14 gi|240103161|ref|YP_002959470.1| - 4.3e-19 68.6 0.1 4.7e-19 68.4 0.1 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|240103162|ref|YP_002959471.1| - 4e-65 218.1 0.4 6e-65 217.5 0.4 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|240103162|ref|YP_002959471.1| - 7.6e-41 138.9 17.0 2.9e-27 95.2 1.6 2.9 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|240103162|ref|YP_002959471.1| - 9.5e-19 67.6 0.1 1.7e-18 66.7 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|240103162|ref|YP_002959471.1| - 3.4e-17 62.8 0.4 4.7e-16 59.1 0.4 2.3 2 0 0 2 2 2 1 FeoB cytosolic helical domain FeoB_C PF07664.12 gi|240103162|ref|YP_002959471.1| - 2.8e-16 58.9 0.6 2.8e-16 58.9 0.6 3.3 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus RsgA_GTPase PF03193.16 gi|240103162|ref|YP_002959471.1| - 3.3e-06 27.1 0.1 0.0031 17.4 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|240103162|ref|YP_002959471.1| - 4.2e-06 26.3 0.0 9.3e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|240103162|ref|YP_002959471.1| - 0.00064 19.7 0.0 0.0016 18.5 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|240103162|ref|YP_002959471.1| - 0.0082 15.9 0.0 0.027 14.2 0.0 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|240103162|ref|YP_002959471.1| - 0.014 14.9 0.4 0.29 10.6 0.4 2.5 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|240103162|ref|YP_002959471.1| - 0.11 12.1 0.0 0.72 9.4 0.0 2.2 1 1 0 1 1 1 0 Ras family MnmE_helical PF12631.7 gi|240103162|ref|YP_002959471.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 MnmE helical domain DUF4423 PF14394.6 gi|240103163|ref|YP_002959472.1| - 0.0008 19.2 0.0 0.00097 18.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Cas_Cas4 PF01930.17 gi|240103163|ref|YP_002959472.1| - 0.0019 18.3 0.1 0.0023 18.1 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 EndIII_4Fe-2S PF10576.9 gi|240103163|ref|YP_002959472.1| - 0.0027 18.0 2.6 0.0043 17.3 2.6 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III MarR_2 PF12802.7 gi|240103163|ref|YP_002959472.1| - 0.0072 16.2 0.0 0.0094 15.8 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|240103163|ref|YP_002959472.1| - 0.0098 15.9 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF5343 PF17278.2 gi|240103163|ref|YP_002959472.1| - 0.012 15.6 0.0 0.015 15.4 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5343) Sigma70_r3 PF04539.16 gi|240103163|ref|YP_002959472.1| - 0.013 15.6 0.3 0.018 15.1 0.3 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 TrmB PF01978.19 gi|240103163|ref|YP_002959472.1| - 0.019 14.9 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_15 PF12324.8 gi|240103163|ref|YP_002959472.1| - 0.032 14.2 0.0 0.043 13.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase DUF2250 PF10007.9 gi|240103163|ref|YP_002959472.1| - 0.059 13.5 0.0 0.083 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) FeoC PF09012.10 gi|240103163|ref|YP_002959472.1| - 0.072 13.2 0.1 0.089 12.9 0.1 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator IF2_N PF04760.15 gi|240103163|ref|YP_002959472.1| - 0.12 12.2 0.4 0.24 11.2 0.4 1.5 1 1 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region NTP_transferase PF00483.23 gi|240103164|ref|YP_002959473.1| - 2.1e-46 158.5 0.0 2.8e-46 158.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|240103164|ref|YP_002959473.1| - 4.1e-12 46.7 0.0 5.8e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|240103164|ref|YP_002959473.1| - 8.7e-12 44.3 9.7 2.8e-05 23.7 0.9 3.2 1 1 3 4 4 4 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|240103164|ref|YP_002959473.1| - 0.0021 17.8 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|240103164|ref|YP_002959473.1| - 0.048 13.6 0.0 0.14 12.0 0.0 1.7 2 0 0 2 2 2 0 Cytidylyltransferase DUF4954 PF16314.5 gi|240103164|ref|YP_002959473.1| - 0.14 10.2 0.9 0.21 9.7 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Hexapep_2 PF14602.6 gi|240103164|ref|YP_002959473.1| - 4.4 7.1 9.3 2.3 8.0 0.5 3.4 3 1 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase DisA_N PF02457.16 gi|240103165|ref|YP_002959474.1| - 7.4e-23 80.4 0.2 1.6e-22 79.3 0.0 1.7 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding PK_C PF02887.16 gi|240103165|ref|YP_002959474.1| - 0.028 14.6 0.0 0.069 13.4 0.0 1.7 1 0 0 1 1 1 0 Pyruvate kinase, alpha/beta domain Inhibitor_I78 PF11720.8 gi|240103165|ref|YP_002959474.1| - 0.079 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Peptidase inhibitor I78 family Flavoprotein PF02441.19 gi|240103166|ref|YP_002959475.1| - 3.8e-30 104.7 0.0 4.6e-30 104.5 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein HTH_24 PF13412.6 gi|240103167|ref|YP_002959476.1| - 3.3e-16 58.6 0.7 5.2e-16 57.9 0.7 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|240103167|ref|YP_002959476.1| - 3.9e-13 49.0 1.3 5.7e-13 48.5 1.3 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|240103167|ref|YP_002959476.1| - 6.4e-08 32.5 0.1 1.1e-07 31.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|240103167|ref|YP_002959476.1| - 4.9e-06 26.2 0.0 9.2e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|240103167|ref|YP_002959476.1| - 5.4e-06 26.8 0.1 1.3e-05 25.6 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|240103167|ref|YP_002959476.1| - 7.5e-06 25.8 0.4 1.5e-05 24.8 0.4 1.5 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|240103167|ref|YP_002959476.1| - 1.1e-05 24.9 0.3 1.6e-05 24.3 0.3 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|240103167|ref|YP_002959476.1| - 1.1e-05 25.0 0.0 2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.19 gi|240103167|ref|YP_002959476.1| - 5.8e-05 22.9 0.0 0.00011 22.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|240103167|ref|YP_002959476.1| - 0.0001 22.1 0.0 0.00022 21.0 0.0 1.5 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|240103167|ref|YP_002959476.1| - 0.0001 22.1 0.1 0.00016 21.5 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|240103167|ref|YP_002959476.1| - 0.00045 20.1 0.1 0.00083 19.2 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|240103167|ref|YP_002959476.1| - 0.0016 18.2 0.0 0.0034 17.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|240103167|ref|YP_002959476.1| - 0.0022 17.6 0.1 0.0056 16.3 0.1 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 Penicillinase_R PF03965.16 gi|240103167|ref|YP_002959476.1| - 0.0034 17.7 0.0 0.0068 16.7 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor PCI PF01399.27 gi|240103167|ref|YP_002959476.1| - 0.0084 16.6 0.2 0.023 15.2 0.0 1.7 2 0 0 2 2 1 1 PCI domain RuvB_C PF05491.13 gi|240103167|ref|YP_002959476.1| - 0.0091 15.9 0.4 0.057 13.3 0.0 2.1 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain Fe_dep_repress PF01325.19 gi|240103167|ref|YP_002959476.1| - 0.014 15.6 0.0 0.027 14.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF742 PF05331.11 gi|240103167|ref|YP_002959476.1| - 0.023 14.5 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) CM_2 PF01817.21 gi|240103167|ref|YP_002959476.1| - 0.025 14.9 1.1 5.5 7.4 0.3 2.3 2 0 0 2 2 2 0 Chorismate mutase type II HTH_28 PF13518.6 gi|240103167|ref|YP_002959476.1| - 0.025 14.7 0.0 0.039 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|240103167|ref|YP_002959476.1| - 0.04 13.5 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_15 PF12324.8 gi|240103167|ref|YP_002959476.1| - 0.049 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_9 PF08221.11 gi|240103167|ref|YP_002959476.1| - 0.061 13.4 0.0 0.5 10.5 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 gi|240103167|ref|YP_002959476.1| - 0.12 12.7 0.1 0.18 12.1 0.1 1.3 1 0 0 1 1 1 0 Transposase HTH_DeoR PF08220.12 gi|240103167|ref|YP_002959476.1| - 0.12 12.2 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain CYTH PF01928.21 gi|240103168|ref|YP_002959477.1| - 1.6e-26 93.3 4.2 1.8e-26 93.2 4.2 1.0 1 0 0 1 1 1 1 CYTH domain Adaptin_N PF01602.20 gi|240103169|ref|YP_002959478.1| - 6.3e-06 25.0 0.0 1.5e-05 23.8 0.0 1.4 1 1 0 1 1 1 1 Adaptin N terminal region Cnd1 PF12717.7 gi|240103169|ref|YP_002959478.1| - 1e-05 25.6 0.4 0.074 13.1 0.1 2.3 1 1 1 2 2 2 2 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.6 gi|240103169|ref|YP_002959478.1| - 1.3e-05 25.5 0.1 0.21 12.0 0.0 2.3 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.22 gi|240103169|ref|YP_002959478.1| - 0.0032 17.6 0.6 0.47 10.9 0.0 3.4 2 1 2 4 4 4 1 HEAT repeat RTP1_C1 PF10363.9 gi|240103169|ref|YP_002959478.1| - 0.052 13.7 0.0 0.092 12.9 0.0 1.4 1 0 0 1 1 1 0 Required for nuclear transport of RNA pol II C-terminus 1 V-ATPase_H_C PF11698.8 gi|240103169|ref|YP_002959478.1| - 0.057 13.5 0.0 1.3 9.2 0.0 2.2 1 1 1 2 2 2 0 V-ATPase subunit H Ribos_L4_asso_C PF14374.6 gi|240103169|ref|YP_002959478.1| - 0.096 12.8 0.3 0.57 10.3 0.0 2.1 2 0 0 2 2 2 0 60S ribosomal protein L4 C-terminal domain API5 PF05918.11 gi|240103169|ref|YP_002959478.1| - 0.11 11.3 0.0 0.28 10.0 0.0 1.6 1 1 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) PMT_2 PF13231.6 gi|240103171|ref|YP_002959480.1| - 2.2e-17 63.8 12.8 2.2e-17 63.8 12.8 3.0 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|240103171|ref|YP_002959480.1| - 1.1e-06 28.5 20.0 1.1e-06 28.5 20.0 3.7 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Class_IIIsignal PF04021.12 gi|240103172|ref|YP_002959481.1| - 8.7e-05 22.4 2.8 0.00013 21.8 2.8 1.2 1 0 0 1 1 1 1 Class III signal peptide Vpu PF00558.19 gi|240103172|ref|YP_002959481.1| - 0.0008 19.1 0.1 0.00092 18.9 0.1 1.2 1 0 0 1 1 1 1 Vpu protein Class_IIIsignal PF04021.12 gi|240103173|ref|YP_002959482.1| - 2.4e-08 33.7 3.3 3e-08 33.4 3.3 1.2 1 0 0 1 1 1 1 Class III signal peptide Glycoprotein_G PF00802.19 gi|240103173|ref|YP_002959482.1| - 0.039 13.3 0.6 0.046 13.1 0.6 1.0 1 0 0 1 1 1 0 Pneumovirus attachment glycoprotein G HTH_11 PF08279.12 gi|240103174|ref|YP_002959483.1| - 8.2e-05 22.5 0.0 0.00015 21.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain HU-CCDC81_euk_2 PF18289.1 gi|240103174|ref|YP_002959483.1| - 0.00021 21.4 0.0 0.98 9.6 0.0 3.1 3 0 0 3 3 3 1 CCDC81 eukaryotic HU domain 2 HTH_28 PF13518.6 gi|240103174|ref|YP_002959483.1| - 0.0099 16.0 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|240103174|ref|YP_002959483.1| - 0.037 13.8 0.0 0.1 12.4 0.0 1.7 2 0 0 2 2 2 0 MerR family regulatory protein HTH_29 PF13551.6 gi|240103174|ref|YP_002959483.1| - 0.038 14.0 0.0 0.11 12.6 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix HTH_23 PF13384.6 gi|240103174|ref|YP_002959483.1| - 0.041 13.7 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_17 PF12728.7 gi|240103174|ref|YP_002959483.1| - 0.045 13.9 0.0 0.086 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|240103174|ref|YP_002959483.1| - 0.057 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain SpoIIID PF12116.8 gi|240103174|ref|YP_002959483.1| - 0.059 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_7 PF02796.15 gi|240103174|ref|YP_002959483.1| - 0.069 13.2 0.3 0.25 11.5 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase HTH_psq PF05225.16 gi|240103174|ref|YP_002959483.1| - 0.14 11.9 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_DeoR PF08220.12 gi|240103174|ref|YP_002959483.1| - 0.14 11.9 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Peptidase_M50 PF02163.22 gi|240103175|ref|YP_002959484.1| - 3.8e-11 42.8 8.3 4.3e-07 29.5 0.2 2.5 1 1 0 2 2 2 2 Peptidase family M50 Zn-ribbon_8 PF09723.10 gi|240103175|ref|YP_002959484.1| - 0.0012 18.9 0.6 0.0021 18.2 0.6 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|240103175|ref|YP_002959484.1| - 0.072 12.9 0.2 0.15 11.9 0.2 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger DUF1272 PF06906.11 gi|240103175|ref|YP_002959484.1| - 0.086 13.0 0.7 0.15 12.1 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DNA_RNApol_7kD PF03604.13 gi|240103175|ref|YP_002959484.1| - 0.18 11.5 1.9 0.33 10.7 1.9 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF1451 PF07295.11 gi|240103175|ref|YP_002959484.1| - 0.2 11.7 2.1 0.51 10.4 0.8 1.9 2 0 0 2 2 2 0 Zinc-ribbon containing domain TF_Zn_Ribbon PF08271.12 gi|240103175|ref|YP_002959484.1| - 0.25 10.9 1.8 0.75 9.4 1.8 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding TFIIS_C PF01096.18 gi|240103175|ref|YP_002959484.1| - 0.59 10.0 1.4 5.3 7.0 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DctQ PF04290.12 gi|240103175|ref|YP_002959484.1| - 2.8 7.8 12.5 3.3 7.6 5.1 2.4 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component Rubredoxin_2 PF18073.1 gi|240103175|ref|YP_002959484.1| - 6.3 6.6 6.8 74 3.2 6.8 2.2 1 1 0 1 1 1 0 Rubredoxin metal binding domain DUF126 PF01989.16 gi|240103176|ref|YP_002959485.1| - 2.9e-36 123.1 0.6 3.9e-36 122.7 0.6 1.2 1 0 0 1 1 1 1 Aconitase X swivel domain GreA_GreB PF01272.19 gi|240103176|ref|YP_002959485.1| - 0.13 12.2 1.0 0.4 10.6 0.4 2.0 2 0 0 2 2 2 0 Transcription elongation factor, GreA/GreB, C-term DUF521 PF04412.13 gi|240103177|ref|YP_002959486.1| - 1e-146 488.8 0.0 1.1e-146 488.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF4828 PF16110.5 gi|240103177|ref|YP_002959486.1| - 0.09 13.3 0.0 22 5.6 0.0 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4828) ABC2_membrane_3 PF12698.7 gi|240103178|ref|YP_002959487.1| - 3.6e-38 131.5 15.8 4.8e-38 131.1 15.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|240103178|ref|YP_002959487.1| - 3.7e-23 82.2 18.0 4.8e-23 81.8 18.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|240103178|ref|YP_002959487.1| - 8.6e-18 64.5 18.6 2.8e-15 56.3 17.8 2.3 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|240103178|ref|YP_002959487.1| - 8.3e-07 28.8 15.5 8.3e-07 28.8 15.5 2.7 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|240103178|ref|YP_002959487.1| - 1.2e-06 28.6 11.7 1.2e-06 28.6 11.7 2.7 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|240103179|ref|YP_002959488.1| - 5.3e-30 104.7 0.0 6.9e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103179|ref|YP_002959488.1| - 2.3e-11 44.1 0.4 0.00011 22.2 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|240103179|ref|YP_002959488.1| - 0.00022 20.9 0.1 0.00048 19.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|240103179|ref|YP_002959488.1| - 0.00091 19.8 0.1 0.0017 18.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|240103179|ref|YP_002959488.1| - 0.0018 18.0 0.2 0.078 12.6 0.1 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SMC_N PF02463.19 gi|240103179|ref|YP_002959488.1| - 0.0029 17.1 0.0 1.7 8.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|240103179|ref|YP_002959488.1| - 0.003 17.3 0.0 0.0073 16.1 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|240103179|ref|YP_002959488.1| - 0.013 15.8 0.1 0.027 14.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|240103179|ref|YP_002959488.1| - 0.017 14.7 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|240103179|ref|YP_002959488.1| - 0.027 14.2 0.6 0.048 13.4 0.6 1.6 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|240103179|ref|YP_002959488.1| - 0.028 14.3 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|240103179|ref|YP_002959488.1| - 0.045 14.0 0.0 0.079 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|240103179|ref|YP_002959488.1| - 0.045 13.5 0.0 0.061 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF3517 PF12030.8 gi|240103179|ref|YP_002959488.1| - 0.083 11.8 0.0 0.18 10.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3517) AAA PF00004.29 gi|240103179|ref|YP_002959488.1| - 0.092 13.2 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|240103179|ref|YP_002959488.1| - 0.1 13.0 0.1 0.13 12.7 0.1 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|240103179|ref|YP_002959488.1| - 0.14 12.2 0.0 0.33 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) G3P_acyltransf PF02660.15 gi|240103180|ref|YP_002959489.1| - 0.34 11.0 6.3 0.42 10.7 6.3 1.3 1 1 0 1 1 1 0 Glycerol-3-phosphate acyltransferase HTH_3 PF01381.22 gi|240103181|ref|YP_002959490.1| - 7.9e-21 73.9 0.2 8.7e-21 73.7 0.2 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|240103181|ref|YP_002959490.1| - 5.7e-16 58.3 0.3 6.7e-16 58.1 0.3 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|240103181|ref|YP_002959490.1| - 1.3e-13 51.1 0.0 1.5e-13 50.9 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|240103181|ref|YP_002959490.1| - 1.5e-08 34.4 0.4 2.4e-08 33.7 0.4 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|240103181|ref|YP_002959490.1| - 2.7e-08 34.1 0.0 3e-08 34.0 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.12 gi|240103181|ref|YP_002959490.1| - 2.1e-05 24.3 0.2 3.1e-05 23.8 0.2 1.2 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|240103181|ref|YP_002959490.1| - 0.00014 21.3 0.3 0.00028 20.3 0.3 1.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|240103181|ref|YP_002959490.1| - 0.00016 21.2 0.1 0.00023 20.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|240103181|ref|YP_002959490.1| - 0.0002 21.0 0.1 0.00036 20.2 0.1 1.4 2 0 0 2 2 1 1 Homeodomain-like domain HTH_37 PF13744.6 gi|240103181|ref|YP_002959490.1| - 0.00031 20.6 0.0 0.00031 20.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|240103181|ref|YP_002959490.1| - 0.00048 20.1 0.0 0.0017 18.3 0.1 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|240103181|ref|YP_002959490.1| - 0.0011 18.9 0.1 0.0019 18.1 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|240103181|ref|YP_002959490.1| - 0.0014 18.5 0.0 0.0046 16.9 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.6 gi|240103181|ref|YP_002959490.1| - 0.0019 17.9 0.3 0.0062 16.3 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|240103181|ref|YP_002959490.1| - 0.0023 17.6 0.0 0.018 14.7 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_7 PF02796.15 gi|240103181|ref|YP_002959490.1| - 0.0043 17.1 0.2 0.0086 16.1 0.1 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase Crp PF00325.20 gi|240103181|ref|YP_002959490.1| - 0.006 16.2 0.0 0.13 11.9 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family YdaS_antitoxin PF15943.5 gi|240103181|ref|YP_002959490.1| - 0.0072 16.2 0.0 0.0077 16.1 0.0 1.2 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT TnsD PF15978.5 gi|240103181|ref|YP_002959490.1| - 0.0074 15.3 0.0 0.0093 15.0 0.0 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_AsnC-type PF13404.6 gi|240103181|ref|YP_002959490.1| - 0.017 15.0 0.2 0.024 14.4 0.2 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|240103181|ref|YP_002959490.1| - 0.028 14.5 0.1 0.043 13.9 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|240103181|ref|YP_002959490.1| - 0.033 14.2 0.0 0.056 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_ECF PF07638.11 gi|240103181|ref|YP_002959490.1| - 0.044 13.7 0.1 0.062 13.2 0.1 1.3 1 0 0 1 1 1 0 ECF sigma factor GntR PF00392.21 gi|240103181|ref|YP_002959490.1| - 0.047 13.4 0.1 0.082 12.6 0.1 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_17 PF12728.7 gi|240103181|ref|YP_002959490.1| - 0.049 13.8 0.1 0.092 13.0 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|240103181|ref|YP_002959490.1| - 0.082 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|240103181|ref|YP_002959490.1| - 0.1 12.4 0.1 0.27 11.1 0.0 1.7 1 1 1 2 2 2 0 HTH DNA binding domain Sigma54_DBD PF04552.13 gi|240103181|ref|YP_002959490.1| - 0.11 12.2 0.0 0.13 12.0 0.0 1.0 1 0 0 1 1 1 0 Sigma-54, DNA binding domain DUF1323 PF07037.11 gi|240103181|ref|YP_002959490.1| - 0.13 12.7 0.0 0.17 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) DUF2178 PF09946.9 gi|240103182|ref|YP_002959491.1| - 4.1e-16 59.0 0.4 3.8e-15 56.0 0.1 2.0 2 0 0 2 2 2 1 Predicted membrane protein (DUF2178) HisKA_7TM PF16927.5 gi|240103182|ref|YP_002959491.1| - 0.00066 19.8 2.0 0.00066 19.8 2.0 1.9 2 0 0 2 2 2 1 N-terminal 7TM region of histidine kinase DUF4131 PF13567.6 gi|240103182|ref|YP_002959491.1| - 0.0027 17.4 8.4 0.054 13.2 1.2 2.7 1 1 1 2 2 2 2 Domain of unknown function (DUF4131) OpgC_C PF10129.9 gi|240103182|ref|YP_002959491.1| - 0.0031 16.5 2.1 0.041 12.8 2.1 2.0 1 1 0 1 1 1 1 OpgC protein DUF3021 PF11457.8 gi|240103182|ref|YP_002959491.1| - 0.011 16.0 5.1 0.012 16.0 2.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3021) UbiA PF01040.18 gi|240103182|ref|YP_002959491.1| - 0.029 13.7 5.6 0.11 11.7 5.6 1.8 1 1 0 1 1 1 0 UbiA prenyltransferase family PalH PF08733.10 gi|240103182|ref|YP_002959491.1| - 0.04 12.9 0.9 0.067 12.2 0.9 1.5 1 1 0 1 1 1 0 PalH/RIM21 TerC PF03741.16 gi|240103182|ref|YP_002959491.1| - 0.09 12.5 3.6 0.36 10.5 3.6 1.9 1 1 0 1 1 1 0 Integral membrane protein TerC family PgaD PF13994.6 gi|240103182|ref|YP_002959491.1| - 0.12 12.4 2.5 0.22 11.6 2.5 1.4 1 0 0 1 1 1 0 PgaD-like protein DUF2070 PF09843.9 gi|240103182|ref|YP_002959491.1| - 0.14 10.4 3.0 0.25 9.6 2.4 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) Tmemb_14 PF03647.13 gi|240103182|ref|YP_002959491.1| - 0.21 12.4 4.0 0.23 12.2 1.7 1.9 1 1 1 2 2 2 0 Transmembrane proteins 14C DUF2700 PF10912.8 gi|240103183|ref|YP_002959492.1| - 0.0086 16.1 1.1 0.011 15.8 1.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2700) MCD_N PF17408.2 gi|240103184|ref|YP_002959493.1| - 0.035 14.2 0.2 0.043 13.9 0.2 1.2 1 0 0 1 1 1 0 Malonyl-CoA decarboxylase N-terminal domain BRO1 PF03097.18 gi|240103184|ref|YP_002959493.1| - 0.11 11.3 0.1 0.12 11.1 0.1 1.1 1 0 0 1 1 1 0 BRO1-like domain SLATT_5 PF18160.1 gi|240103184|ref|YP_002959493.1| - 0.12 11.7 0.1 0.14 11.5 0.1 1.1 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 DUF3951 PF13131.6 gi|240103185|ref|YP_002959494.1| - 0.17 12.1 5.5 3.1 8.1 2.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3951) DUF2518 PF10726.9 gi|240103185|ref|YP_002959494.1| - 0.29 10.8 3.0 0.28 10.8 3.0 1.1 1 0 0 1 1 1 0 Protein of function (DUF2518) DUF2207 PF09972.9 gi|240103185|ref|YP_002959494.1| - 1.3 7.7 4.9 1.4 7.6 4.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) HIG_1_N PF04588.13 gi|240103185|ref|YP_002959494.1| - 5.8 7.2 8.4 3.9 7.8 0.9 2.2 1 1 1 2 2 2 0 Hypoxia induced protein conserved region DUF3742 PF12553.8 gi|240103185|ref|YP_002959494.1| - 6.1 7.0 7.5 4.6 7.4 6.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3742) TPP_enzyme_C PF02775.21 gi|240103186|ref|YP_002959495.1| - 1.9e-32 112.2 0.1 3.2e-32 111.4 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|240103186|ref|YP_002959495.1| - 8.3e-15 55.2 0.0 1.4e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|240103186|ref|YP_002959495.1| - 4.8e-10 38.8 10.2 2.3e-06 27.2 1.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|240103186|ref|YP_002959495.1| - 2.5e-07 30.5 9.1 0.0011 19.0 1.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|240103186|ref|YP_002959495.1| - 3.3e-06 27.1 8.4 7.1e-06 26.1 8.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|240103186|ref|YP_002959495.1| - 9.5e-06 26.1 9.6 4e-05 24.1 9.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|240103186|ref|YP_002959495.1| - 1.4e-05 25.1 20.0 0.00018 21.6 10.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240103186|ref|YP_002959495.1| - 9.5e-05 22.3 18.5 0.0022 18.0 1.7 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|240103186|ref|YP_002959495.1| - 0.00011 22.3 11.5 0.0012 19.0 11.0 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|240103186|ref|YP_002959495.1| - 0.00065 19.4 0.1 0.2 11.3 0.0 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transket_pyr PF02779.24 gi|240103186|ref|YP_002959495.1| - 0.01 15.5 0.0 1.5 8.5 0.0 2.6 2 1 0 2 2 2 0 Transketolase, pyrimidine binding domain Fer4_16 PF13484.6 gi|240103186|ref|YP_002959495.1| - 0.01 16.7 7.3 0.017 16.0 0.9 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|240103186|ref|YP_002959495.1| - 0.012 16.0 10.4 0.84 10.3 2.1 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|240103186|ref|YP_002959495.1| - 0.066 13.7 7.2 0.51 10.8 1.2 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain DXP_synthase_N PF13292.6 gi|240103186|ref|YP_002959495.1| - 0.21 10.8 0.5 3.6 6.7 0.0 2.1 1 1 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_15 PF13459.6 gi|240103186|ref|YP_002959495.1| - 0.34 11.7 8.5 0.95 10.2 1.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|240103186|ref|YP_002959495.1| - 2.6 9.2 14.5 0.83 10.7 5.2 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|240103186|ref|YP_002959495.1| - 6.1 7.5 12.2 6.7 7.3 2.8 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I ATPase_2 PF01637.18 gi|240103187|ref|YP_002959496.1| - 3.1e-26 92.7 0.1 7.1e-25 88.3 0.0 2.4 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|240103187|ref|YP_002959496.1| - 2.4e-21 76.0 3.5 1.7e-20 73.3 0.5 3.0 3 1 0 3 3 3 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|240103187|ref|YP_002959496.1| - 9.9e-11 41.8 0.0 3.7e-10 40.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240103187|ref|YP_002959496.1| - 8.3e-10 39.3 0.1 8.6e-09 36.0 0.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|240103187|ref|YP_002959496.1| - 4e-09 36.9 0.0 1.2e-08 35.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|240103187|ref|YP_002959496.1| - 0.00052 20.4 0.0 0.0012 19.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|240103187|ref|YP_002959496.1| - 0.03 13.7 0.0 0.11 11.8 0.0 1.9 1 1 0 1 1 1 0 Bacterial TniB protein DUF4143 PF13635.6 gi|240103187|ref|YP_002959496.1| - 0.089 12.9 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) DUF4152 PF13680.6 gi|240103188|ref|YP_002959497.1| - 3.5e-133 442.0 1.1 3.9e-133 441.8 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4152) PaREP1 PF05942.11 gi|240103190|ref|YP_002959499.1| - 0.089 12.7 0.2 0.11 12.4 0.2 1.4 1 1 0 1 1 1 0 Archaeal PaREP1/PaREP8 family AI-2E_transport PF01594.16 gi|240103191|ref|YP_002959500.1| - 1.4e-41 142.7 33.8 1.9e-41 142.3 33.8 1.1 1 0 0 1 1 1 1 AI-2E family transporter Isochorismatase PF00857.20 gi|240103192|ref|YP_002959501.1| - 5.1e-45 153.8 0.0 5.6e-45 153.6 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Toprim_3 PF13362.6 gi|240103192|ref|YP_002959501.1| - 0.045 14.1 0.0 0.14 12.6 0.0 1.9 1 1 0 1 1 1 0 Toprim domain Corona_I PF03187.14 gi|240103192|ref|YP_002959501.1| - 0.16 11.6 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Corona nucleocapsid I protein DUF2240 PF09999.9 gi|240103193|ref|YP_002959502.1| - 2.2e-07 30.6 0.0 2.6e-05 23.9 0.0 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) PAP2_3 PF14378.6 gi|240103194|ref|YP_002959503.1| - 3.4e-10 39.9 10.4 3.4e-10 39.9 10.4 1.8 2 1 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|240103194|ref|YP_002959503.1| - 6.2e-07 29.3 2.7 6.2e-07 29.3 2.7 2.9 3 1 0 3 3 3 1 PAP2 superfamily Hydrolase_3 PF08282.12 gi|240103195|ref|YP_002959504.1| - 0.00026 20.8 0.0 0.0029 17.4 0.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240103195|ref|YP_002959504.1| - 0.072 13.4 0.9 4.3 7.6 0.1 2.3 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase ABC_tran PF00005.27 gi|240103196|ref|YP_002959505.1| - 2.9e-43 147.6 0.0 3.3e-21 76.3 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|240103196|ref|YP_002959505.1| - 1.1e-16 61.5 7.0 2.2e-05 24.4 0.3 4.3 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240103196|ref|YP_002959505.1| - 1.9e-11 43.8 7.1 5.8e-05 22.6 0.9 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|240103196|ref|YP_002959505.1| - 3.1e-11 42.9 1.4 6.8e-11 41.8 1.4 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_6 PF12837.7 gi|240103196|ref|YP_002959505.1| - 3e-09 36.5 12.1 0.00024 21.0 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|240103196|ref|YP_002959505.1| - 7.5e-07 28.7 3.5 7.5e-07 28.7 3.5 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Rad17 PF03215.15 gi|240103196|ref|YP_002959505.1| - 3.9e-06 26.9 0.0 0.061 13.2 0.0 2.4 2 0 0 2 2 2 2 Rad17 P-loop domain AAA PF00004.29 gi|240103196|ref|YP_002959505.1| - 5.5e-06 26.8 0.0 0.073 13.5 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Fer4_21 PF14697.6 gi|240103196|ref|YP_002959505.1| - 6.9e-06 26.1 9.9 1.6e-05 24.9 9.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|240103196|ref|YP_002959505.1| - 7.3e-06 25.8 0.4 0.04 13.6 0.1 2.8 3 0 0 3 3 3 2 AAA domain Fer4_10 PF13237.6 gi|240103196|ref|YP_002959505.1| - 3.1e-05 24.0 10.7 0.00057 19.9 10.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240103196|ref|YP_002959505.1| - 3.7e-05 23.8 7.0 7.6e-05 22.8 7.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_18 PF13238.6 gi|240103196|ref|YP_002959505.1| - 4e-05 24.2 1.4 0.011 16.3 0.0 3.4 3 1 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|240103196|ref|YP_002959505.1| - 5.7e-05 23.0 0.2 0.24 11.1 0.0 3.8 4 0 0 4 4 4 1 AAA ATPase domain Fer4_2 PF12797.7 gi|240103196|ref|YP_002959505.1| - 5.8e-05 22.9 11.7 0.003 17.6 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240103196|ref|YP_002959505.1| - 6.8e-05 23.4 11.3 0.0028 18.2 12.5 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|240103196|ref|YP_002959505.1| - 0.00015 22.2 0.2 0.86 10.0 0.0 2.6 2 2 0 2 2 2 2 AAA ATPase domain RNA_helicase PF00910.22 gi|240103196|ref|YP_002959505.1| - 0.00034 21.0 0.1 0.92 9.9 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_33 PF13671.6 gi|240103196|ref|YP_002959505.1| - 0.00043 20.5 0.8 0.65 10.2 0.1 2.9 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|240103196|ref|YP_002959505.1| - 0.0017 18.4 0.3 2.4 8.2 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|240103196|ref|YP_002959505.1| - 0.0022 17.8 0.6 0.65 9.7 0.1 2.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|240103196|ref|YP_002959505.1| - 0.0022 18.3 0.1 3.4 7.9 0.0 2.9 3 0 0 3 3 2 1 AAA domain AAA_28 PF13521.6 gi|240103196|ref|YP_002959505.1| - 0.0024 18.1 0.8 1.9 8.7 0.1 2.7 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|240103196|ref|YP_002959505.1| - 0.0051 17.3 9.3 0.19 12.2 0.1 2.8 3 1 1 4 4 2 2 AAA domain AAA_29 PF13555.6 gi|240103196|ref|YP_002959505.1| - 0.0057 16.4 0.7 2.6 7.8 0.1 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|240103196|ref|YP_002959505.1| - 0.0059 16.5 0.1 0.96 9.3 0.0 2.9 3 0 0 3 3 3 1 RsgA GTPase NB-ARC PF00931.22 gi|240103196|ref|YP_002959505.1| - 0.0059 15.8 0.0 0.97 8.6 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain dNK PF01712.19 gi|240103196|ref|YP_002959505.1| - 0.017 15.0 0.1 2.3 8.0 0.0 2.3 2 0 0 2 2 2 0 Deoxynucleoside kinase NACHT PF05729.12 gi|240103196|ref|YP_002959505.1| - 0.018 15.0 3.1 0.54 10.2 0.2 2.7 2 0 0 2 2 2 0 NACHT domain Fer4_16 PF13484.6 gi|240103196|ref|YP_002959505.1| - 0.018 16.0 10.5 0.056 14.4 3.1 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain SRP54 PF00448.22 gi|240103196|ref|YP_002959505.1| - 0.026 14.2 3.7 1 8.9 0.2 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|240103196|ref|YP_002959505.1| - 0.036 14.1 0.4 1.8 8.6 0.0 2.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|240103196|ref|YP_002959505.1| - 0.043 13.3 0.2 5.7 6.4 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|240103196|ref|YP_002959505.1| - 0.093 12.7 1.2 17 5.4 0.1 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 gi|240103196|ref|YP_002959505.1| - 0.11 11.1 0.4 9 4.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|240103196|ref|YP_002959505.1| - 0.15 11.8 0.6 7.7 6.2 0.1 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein PhoH PF02562.16 gi|240103196|ref|YP_002959505.1| - 0.17 11.3 0.3 16 4.9 0.1 2.7 2 0 0 2 2 2 0 PhoH-like protein MobB PF03205.14 gi|240103196|ref|YP_002959505.1| - 0.24 11.3 2.2 6.7 6.6 0.1 2.8 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Fer4_4 PF12800.7 gi|240103196|ref|YP_002959505.1| - 0.25 11.9 13.8 0.77 10.4 3.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DUF87 PF01935.17 gi|240103196|ref|YP_002959505.1| - 0.28 11.2 2.1 5.8 6.9 0.0 2.9 3 0 0 3 3 2 0 Helicase HerA, central domain MMR_HSR1 PF01926.23 gi|240103196|ref|YP_002959505.1| - 0.31 11.2 1.2 5.3 7.2 0.1 2.6 2 1 0 2 2 2 0 50S ribosome-binding GTPase Fer4_3 PF12798.7 gi|240103196|ref|YP_002959505.1| - 0.34 11.9 17.9 1 10.4 5.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain NTPase_1 PF03266.15 gi|240103196|ref|YP_002959505.1| - 1 9.2 7.1 3 7.7 0.2 3.1 4 0 0 4 4 2 0 NTPase Fer4_17 PF13534.6 gi|240103196|ref|YP_002959505.1| - 1.2 9.7 10.2 0.35 11.4 2.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_19 PF13245.6 gi|240103196|ref|YP_002959505.1| - 2.3 8.5 5.2 15 5.9 0.3 2.8 3 0 0 3 3 2 0 AAA domain Fer4_8 PF13183.6 gi|240103196|ref|YP_002959505.1| - 7.5 7.1 12.8 1.7 9.1 3.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain AIRS_C PF02769.22 gi|240103197|ref|YP_002959506.1| - 4.6e-26 91.8 0.1 6.8e-25 88.0 0.1 2.1 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|240103197|ref|YP_002959506.1| - 1.5e-16 60.8 0.1 3.4e-16 59.7 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TGT PF01702.18 gi|240103198|ref|YP_002959507.1| - 6.8e-81 272.1 0.0 9e-81 271.7 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|240103198|ref|YP_002959507.1| - 2e-42 143.3 3.3 6.1e-42 141.8 3.3 1.9 1 0 0 1 1 1 1 C1 domain of tRNA-guanine transglycosylase dimerisation TGT_C2 PF14810.6 gi|240103198|ref|YP_002959507.1| - 3.8e-23 81.4 0.0 2.7e-22 78.7 0.0 2.5 3 0 0 3 3 3 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|240103198|ref|YP_002959507.1| - 1.7e-16 59.9 0.2 6.9e-16 58.0 0.1 2.1 2 0 0 2 2 2 1 PUA domain UPF0113 PF03657.13 gi|240103198|ref|YP_002959507.1| - 7.6e-05 22.9 0.0 0.004 17.4 0.0 2.5 2 0 0 2 2 2 1 UPF0113 PUA domain PUA_3 PF17785.1 gi|240103198|ref|YP_002959507.1| - 7.9e-05 22.4 0.1 0.022 14.6 0.0 3.3 3 0 0 3 3 3 1 PUA-like domain PHO4 PF01384.20 gi|240103199|ref|YP_002959508.1| - 1.1e-52 179.1 28.1 1.1e-51 175.9 28.1 2.0 1 1 0 1 1 1 1 Phosphate transporter family ThrE PF06738.12 gi|240103200|ref|YP_002959509.1| - 0.24 10.7 2.0 0.35 10.2 2.0 1.3 1 0 0 1 1 1 0 Putative threonine/serine exporter DUF2721 PF11026.8 gi|240103200|ref|YP_002959509.1| - 0.25 11.2 3.8 0.55 10.1 3.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) TIM21 PF08294.11 gi|240103202|ref|YP_002959511.1| - 0.21 11.5 0.1 0.3 10.9 0.1 1.2 1 0 0 1 1 1 0 TIM21 HMG-CoA_red PF00368.18 gi|240103203|ref|YP_002959512.1| - 1.3e-140 468.6 0.3 1.4e-140 468.5 0.3 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF553 PF04473.12 gi|240103203|ref|YP_002959512.1| - 0.19 11.2 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 Transglutaminase-like domain CbiA PF01656.23 gi|240103204|ref|YP_002959513.1| - 3.4e-19 69.2 0.0 4.5e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|240103204|ref|YP_002959513.1| - 9.4e-15 55.0 0.0 1.6e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|240103204|ref|YP_002959513.1| - 1.3e-10 41.2 0.0 1.6e-07 31.0 0.0 2.3 3 0 0 3 3 3 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|240103204|ref|YP_002959513.1| - 1.8e-09 37.5 0.0 1e-06 28.4 0.0 2.7 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|240103204|ref|YP_002959513.1| - 4e-09 36.3 0.1 0.0027 17.2 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|240103204|ref|YP_002959513.1| - 2.3e-05 23.8 0.3 0.00013 21.3 0.3 1.9 1 1 0 1 1 1 1 Anion-transporting ATPase SRP54 PF00448.22 gi|240103204|ref|YP_002959513.1| - 0.00018 21.2 0.3 0.00036 20.2 0.1 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|240103204|ref|YP_002959513.1| - 0.0012 18.7 0.0 0.0031 17.4 0.0 1.6 2 0 0 2 2 2 1 Adenylylsulphate kinase KTI12 PF08433.10 gi|240103204|ref|YP_002959513.1| - 0.0064 16.0 0.0 0.0091 15.5 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|240103204|ref|YP_002959513.1| - 0.012 15.0 0.1 0.028 13.7 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin MipZ PF09140.11 gi|240103204|ref|YP_002959513.1| - 0.025 13.9 0.1 0.055 12.7 0.0 1.7 1 1 0 1 1 1 0 ATPase MipZ GTP_EFTU PF00009.27 gi|240103204|ref|YP_002959513.1| - 0.051 13.1 0.1 2.1 7.8 0.0 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_30 PF13604.6 gi|240103204|ref|YP_002959513.1| - 0.057 13.1 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|240103204|ref|YP_002959513.1| - 0.072 12.8 0.0 0.11 12.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|240103204|ref|YP_002959513.1| - 0.072 12.1 0.1 0.13 11.2 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|240103204|ref|YP_002959513.1| - 0.098 12.2 0.2 0.25 10.9 0.2 1.7 1 0 0 1 1 1 0 AAA domain DUF1233 PF06806.12 gi|240103204|ref|YP_002959513.1| - 0.1 12.2 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Putative excisionase (DUF1233) DUF1611 PF07755.11 gi|240103204|ref|YP_002959513.1| - 0.11 11.7 0.2 0.42 9.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain NTPase_1 PF03266.15 gi|240103204|ref|YP_002959513.1| - 0.12 12.3 0.9 0.38 10.7 0.1 2.0 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|240103204|ref|YP_002959513.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|240103204|ref|YP_002959513.1| - 0.21 10.6 0.2 0.33 10.0 0.2 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein VirC1 PF07015.11 gi|240103204|ref|YP_002959513.1| - 0.24 10.7 0.1 0.37 10.1 0.1 1.3 1 0 0 1 1 1 0 VirC1 protein ADH_N PF08240.12 gi|240103205|ref|YP_002959514.1| - 7.4e-36 122.4 0.9 1.2e-35 121.6 0.9 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|240103205|ref|YP_002959514.1| - 9.7e-29 100.0 0.0 1.9e-28 99.0 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|240103205|ref|YP_002959514.1| - 1.3e-10 41.1 0.0 2.3e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|240103205|ref|YP_002959514.1| - 3.2e-07 31.5 0.0 5.6e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|240103205|ref|YP_002959514.1| - 0.0093 15.9 0.0 0.025 14.5 0.0 1.7 2 0 0 2 2 2 1 N-terminal domain of oxidoreductase tRNA-synt_2d PF01409.20 gi|240103206|ref|YP_002959515.1| - 1.1e-82 277.2 0.0 1.4e-82 276.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|240103206|ref|YP_002959515.1| - 9e-06 25.3 0.0 0.023 14.2 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|240103206|ref|YP_002959515.1| - 0.00021 20.5 0.0 0.096 11.8 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) HTH_27 PF13463.6 gi|240103206|ref|YP_002959515.1| - 0.01 16.3 8.0 0.03 14.8 0.3 3.9 4 1 0 4 4 4 0 Winged helix DNA-binding domain MarR PF01047.22 gi|240103206|ref|YP_002959515.1| - 0.013 15.4 0.8 5.4 7.0 0.1 3.2 3 0 0 3 3 3 0 MarR family MarR_2 PF12802.7 gi|240103206|ref|YP_002959515.1| - 0.049 13.5 1.2 2.3 8.2 0.2 3.0 3 0 0 3 3 3 0 MarR family TrmB PF01978.19 gi|240103206|ref|YP_002959515.1| - 1.5 8.7 6.0 0.73 9.8 0.7 3.1 4 0 0 4 4 4 0 Sugar-specific transcriptional regulator TrmB tRNA_synthFbeta PF17759.1 gi|240103207|ref|YP_002959516.1| - 5.1e-48 163.3 0.0 1.2e-47 162.1 0.0 1.6 1 1 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B3_4 PF03483.17 gi|240103207|ref|YP_002959516.1| - 8.5e-17 61.4 0.0 1.4e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain B5 PF03484.15 gi|240103207|ref|YP_002959516.1| - 1.2e-14 54.3 1.2 2.1e-13 50.3 0.4 2.8 3 0 0 3 3 3 1 tRNA synthetase B5 domain PhetRS_B1 PF18262.1 gi|240103207|ref|YP_002959516.1| - 1.3e-08 34.9 0.4 1.6e-07 31.4 0.0 3.0 3 1 0 3 3 3 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|240103207|ref|YP_002959516.1| - 0.00016 21.3 0.0 0.00038 20.0 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) Thy1 PF02511.15 gi|240103208|ref|YP_002959517.1| - 4.3e-62 209.3 1.3 5.2e-62 209.0 1.3 1.0 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Ski_Sno PF02437.17 gi|240103208|ref|YP_002959517.1| - 0.071 12.9 0.0 5.9 6.7 0.0 2.2 2 0 0 2 2 2 0 SKI/SNO/DAC family OTCace PF00185.24 gi|240103209|ref|YP_002959518.1| - 2e-66 222.9 0.1 2.8e-66 222.5 0.1 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|240103209|ref|YP_002959518.1| - 1.2e-51 174.6 0.0 3.3e-51 173.2 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Lactamase_B_2 PF12706.7 gi|240103210|ref|YP_002959519.1| - 4.3e-18 65.6 0.1 5.5e-18 65.2 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|240103210|ref|YP_002959519.1| - 4.3e-06 26.9 3.0 1e-05 25.6 1.8 2.1 1 1 0 2 2 2 1 Metallo-beta-lactamase superfamily NTP_transf_2 PF01909.23 gi|240103211|ref|YP_002959520.1| - 1.1e-08 35.2 0.0 1.5e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|240103211|ref|YP_002959520.1| - 1.9e-07 31.0 0.0 2.4e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|240103211|ref|YP_002959520.1| - 0.013 15.7 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm MdcG PF10620.9 gi|240103211|ref|YP_002959520.1| - 0.067 13.0 0.0 0.097 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Adenyl_cycl_N PF12633.7 gi|240103211|ref|YP_002959520.1| - 0.22 11.4 0.0 0.25 11.2 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain HEPN PF05168.14 gi|240103212|ref|YP_002959521.1| - 6.6e-28 97.2 0.8 7.9e-28 97.0 0.8 1.0 1 0 0 1 1 1 1 HEPN domain DUF5113 PF17140.4 gi|240103212|ref|YP_002959521.1| - 0.0084 15.9 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5113) DUF4398 PF14346.6 gi|240103212|ref|YP_002959521.1| - 0.036 14.7 0.3 0.078 13.6 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) TPR_2 PF07719.17 gi|240103212|ref|YP_002959521.1| - 0.059 13.5 1.8 0.18 12.0 1.8 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF4860 PF16152.5 gi|240103212|ref|YP_002959521.1| - 0.12 12.3 0.2 11 6.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4860) TPR_1 PF00515.28 gi|240103212|ref|YP_002959521.1| - 0.15 11.9 2.3 0.46 10.4 2.3 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat Mut7-C PF01927.16 gi|240103213|ref|YP_002959522.1| - 1.2e-44 152.0 0.0 1.5e-44 151.7 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|240103213|ref|YP_002959522.1| - 2.2e-07 30.5 0.0 5.1e-07 29.4 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_9 PF18477.1 gi|240103213|ref|YP_002959522.1| - 7.9e-05 22.9 0.1 0.00013 22.2 0.1 1.4 1 0 0 1 1 1 1 PIN like domain zf_CopZ PF18423.1 gi|240103213|ref|YP_002959522.1| - 0.008 16.1 1.5 0.013 15.4 1.5 1.3 1 0 0 1 1 1 1 Zinc binding domain G3P_antiterm PF04309.12 gi|240103213|ref|YP_002959522.1| - 0.0085 15.5 0.0 0.01 15.3 0.0 1.1 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator Zn-ribbon_8 PF09723.10 gi|240103213|ref|YP_002959522.1| - 0.017 15.2 1.0 3.7 7.8 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|240103213|ref|YP_002959522.1| - 0.027 14.0 2.7 0.15 11.6 2.7 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|240103213|ref|YP_002959522.1| - 0.031 14.3 0.2 0.05 13.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|240103213|ref|YP_002959522.1| - 0.038 13.9 4.4 3.5 7.6 0.1 2.8 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin PF00301.20 gi|240103213|ref|YP_002959522.1| - 0.077 13.0 2.6 4.2 7.5 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin PIN_10 PF18478.1 gi|240103213|ref|YP_002959522.1| - 0.087 13.0 0.2 0.81 9.9 0.2 2.1 1 1 0 1 1 1 0 PIN like domain PhnA_Zn_Ribbon PF08274.12 gi|240103213|ref|YP_002959522.1| - 0.26 11.3 1.9 6.8 6.7 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf_UBZ PF18439.1 gi|240103213|ref|YP_002959522.1| - 0.3 10.7 0.9 6.6 6.4 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger TFIIS_C PF01096.18 gi|240103213|ref|YP_002959522.1| - 3.8 7.5 5.7 4.9 7.1 0.6 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) MAF_flag10 PF01973.18 gi|240103214|ref|YP_002959523.1| - 3.7e-28 98.4 0.0 4.8e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 GramPos_pilinD1 PF16555.5 gi|240103215|ref|YP_002959524.1| - 0.039 14.1 0.5 4 7.6 0.0 2.2 2 0 0 2 2 2 0 Gram-positive pilin subunit D1, N-terminal domain Isy1 PF06246.12 gi|240103215|ref|YP_002959524.1| - 0.23 11.0 0.5 0.33 10.5 0.5 1.1 1 0 0 1 1 1 0 Isy1-like splicing family Macoilin PF09726.9 gi|240103215|ref|YP_002959524.1| - 1.5 7.3 7.8 2 6.9 7.8 1.1 1 0 0 1 1 1 0 Macoilin family PI3K_1B_p101 PF10486.9 gi|240103215|ref|YP_002959524.1| - 1.7 6.3 6.5 2.3 5.9 6.5 1.0 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit AAA_14 PF13173.6 gi|240103217|ref|YP_002959526.1| - 2.9e-26 92.0 0.0 6.2e-26 91.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.10 gi|240103217|ref|YP_002959526.1| - 7.5e-06 25.7 0.1 1.8e-05 24.5 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA_16 PF13191.6 gi|240103217|ref|YP_002959526.1| - 3.2e-05 24.4 0.9 0.00091 19.6 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain MarR PF01047.22 gi|240103217|ref|YP_002959526.1| - 4.1e-05 23.4 0.0 8.4e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|240103217|ref|YP_002959526.1| - 6.4e-05 22.8 0.0 0.00017 21.4 0.0 1.6 1 0 0 1 1 1 1 MarR family SRP54 PF00448.22 gi|240103217|ref|YP_002959526.1| - 0.0006 19.5 0.0 0.00093 18.9 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|240103217|ref|YP_002959526.1| - 0.0015 18.5 0.0 0.0026 17.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain HTH_24 PF13412.6 gi|240103217|ref|YP_002959526.1| - 0.0019 17.7 0.0 0.0053 16.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding NB-ARC PF00931.22 gi|240103217|ref|YP_002959526.1| - 0.0019 17.4 1.3 0.35 10.0 0.0 2.2 1 1 0 2 2 2 2 NB-ARC domain AAA PF00004.29 gi|240103217|ref|YP_002959526.1| - 0.0056 17.1 0.0 0.013 15.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|240103217|ref|YP_002959526.1| - 0.008 16.1 0.2 0.4 10.6 0.0 2.4 1 1 0 2 2 2 1 ATPase domain predominantly from Archaea Rrf2 PF02082.20 gi|240103217|ref|YP_002959526.1| - 0.0087 16.4 0.0 0.02 15.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator IstB_IS21 PF01695.17 gi|240103217|ref|YP_002959526.1| - 0.0099 15.6 0.2 0.021 14.6 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein HTH_36 PF13730.6 gi|240103217|ref|YP_002959526.1| - 0.011 15.7 0.1 0.032 14.2 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain RsgA_GTPase PF03193.16 gi|240103217|ref|YP_002959526.1| - 0.016 15.1 0.0 0.28 11.1 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase DUF815 PF05673.13 gi|240103217|ref|YP_002959526.1| - 0.02 14.1 0.0 0.03 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) HTH_27 PF13463.6 gi|240103217|ref|YP_002959526.1| - 0.02 15.4 0.1 0.12 12.8 0.0 2.3 3 0 0 3 3 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|240103217|ref|YP_002959526.1| - 0.039 14.0 0.2 0.11 12.6 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain Arf PF00025.21 gi|240103217|ref|YP_002959526.1| - 0.042 13.3 0.0 0.073 12.5 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_5 PF07728.14 gi|240103217|ref|YP_002959526.1| - 0.049 13.6 2.3 1.7 8.6 1.3 2.9 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) TrmB PF01978.19 gi|240103217|ref|YP_002959526.1| - 0.061 13.2 2.0 0.1 12.5 0.0 2.5 4 0 0 4 4 2 0 Sugar-specific transcriptional regulator TrmB AAA_24 PF13479.6 gi|240103217|ref|YP_002959526.1| - 0.062 13.0 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|240103217|ref|YP_002959526.1| - 0.076 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_25 PF13481.6 gi|240103217|ref|YP_002959526.1| - 0.09 12.3 0.1 0.22 11.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain HTH_11 PF08279.12 gi|240103217|ref|YP_002959526.1| - 0.093 12.7 0.5 0.28 11.2 0.0 2.0 2 0 0 2 2 2 0 HTH domain AAA_22 PF13401.6 gi|240103217|ref|YP_002959526.1| - 0.095 13.0 1.6 6.4 7.1 1.6 2.4 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|240103217|ref|YP_002959526.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SRPRB PF09439.10 gi|240103217|ref|YP_002959526.1| - 0.14 11.6 0.0 0.45 9.9 0.0 1.8 2 0 0 2 2 1 0 Signal recognition particle receptor beta subunit DAP3 PF10236.9 gi|240103217|ref|YP_002959526.1| - 0.19 10.9 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 MFS_1 PF07690.16 gi|240103218|ref|YP_002959527.1| - 1.5e-14 53.7 43.6 3.1e-13 49.4 23.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Gram_pos_anchor PF00746.21 gi|240103218|ref|YP_002959527.1| - 0.93 9.5 3.0 3.3 7.7 0.4 2.7 2 0 0 2 2 2 0 LPXTG cell wall anchor motif CTP_transf_like PF01467.26 gi|240103219|ref|YP_002959528.1| - 4.7e-20 72.3 0.1 1e-19 71.2 0.0 1.6 2 0 0 2 2 2 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|240103219|ref|YP_002959528.1| - 0.025 13.8 0.0 0.84 8.8 0.0 2.1 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase SAM_adeno_trans PF01887.16 gi|240103220|ref|YP_002959529.1| - 3.2e-75 252.6 0.0 3.6e-75 252.4 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Trm56 PF01994.16 gi|240103221|ref|YP_002959530.1| - 2.9e-50 169.2 0.0 3.7e-50 168.8 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.6 gi|240103221|ref|YP_002959530.1| - 0.00029 20.3 0.0 0.00053 19.4 0.0 1.5 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP SpoU_methylase PF00588.19 gi|240103221|ref|YP_002959530.1| - 0.0052 17.0 0.0 0.0069 16.5 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family CDP-OH_P_transf PF01066.21 gi|240103222|ref|YP_002959531.1| - 5.2e-16 59.2 1.5 5.2e-16 59.2 1.5 2.0 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase MtrC PF04211.13 gi|240103222|ref|YP_002959531.1| - 0.039 13.0 0.7 2.9 6.9 0.1 2.3 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit C Peptidase_M54 PF07998.11 gi|240103223|ref|YP_002959532.1| - 9.8e-53 179.0 0.0 1.1e-52 178.9 0.0 1.0 1 0 0 1 1 1 1 Peptidase family M54 Metallopep PF12044.8 gi|240103223|ref|YP_002959532.1| - 0.024 13.2 0.1 0.033 12.8 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_3 PF13582.6 gi|240103223|ref|YP_002959532.1| - 0.11 13.0 0.0 0.15 12.6 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|240103223|ref|YP_002959532.1| - 0.29 11.3 0.0 0.39 10.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 ERCC4 PF02732.15 gi|240103224|ref|YP_002959533.1| - 4.3e-30 105.0 0.4 2.1e-29 102.7 0.0 2.4 3 0 0 3 3 3 1 ERCC4 domain Helicase_C PF00271.31 gi|240103224|ref|YP_002959533.1| - 3.4e-26 91.8 0.0 4.7e-24 84.9 0.0 3.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|240103224|ref|YP_002959533.1| - 2.7e-20 72.9 0.3 3.4e-19 69.3 0.0 2.8 4 0 0 4 4 4 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|240103224|ref|YP_002959533.1| - 1.3e-18 67.6 0.1 2.2e-17 63.6 0.0 2.9 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|240103224|ref|YP_002959533.1| - 1.7e-10 40.8 0.0 5.2e-10 39.3 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|240103224|ref|YP_002959533.1| - 3.2e-07 30.9 0.2 1.6e-06 28.6 0.1 2.3 2 0 0 2 2 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|240103224|ref|YP_002959533.1| - 3.8e-07 29.6 0.1 9.1e-07 28.4 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|240103224|ref|YP_002959533.1| - 0.0047 17.1 0.0 0.059 13.6 0.0 2.8 1 1 0 1 1 1 1 Helix-hairpin-helix motif SWI2_SNF2 PF18766.1 gi|240103224|ref|YP_002959533.1| - 0.005 16.5 0.0 0.018 14.7 0.0 1.9 2 0 0 2 2 2 1 SWI2/SNF2 ATPase ERCC3_RAD25_C PF16203.5 gi|240103224|ref|YP_002959533.1| - 0.026 13.8 0.1 0.056 12.7 0.1 1.6 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase Radical_SAM PF04055.21 gi|240103224|ref|YP_002959533.1| - 0.03 14.7 1.3 3 8.2 0.0 3.7 4 1 0 4 4 3 0 Radical SAM superfamily SecA_DEAD PF07517.14 gi|240103224|ref|YP_002959533.1| - 0.032 13.5 0.0 0.15 11.3 0.0 1.9 2 1 0 2 2 2 0 SecA DEAD-like domain 5_3_exonuc PF01367.20 gi|240103224|ref|YP_002959533.1| - 0.82 10.3 0.0 0.82 10.3 0.0 2.9 3 1 0 3 3 2 0 5'-3' exonuclease, C-terminal SAM fold APOBEC3 PF18771.1 gi|240103226|ref|YP_002959535.1| - 0.14 12.3 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 APOBEC3 SMC_ScpA PF02616.14 gi|240103228|ref|YP_002959537.1| - 2.1e-17 63.8 5.5 1e-12 48.5 4.3 2.1 1 1 1 2 2 2 2 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 gi|240103228|ref|YP_002959537.1| - 0.00013 21.2 0.0 0.00027 20.2 0.0 1.4 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein DUF4470 PF14737.6 gi|240103228|ref|YP_002959537.1| - 0.0099 16.0 0.0 0.27 11.4 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4470) CNDH2_C PF16858.5 gi|240103228|ref|YP_002959537.1| - 0.029 14.3 0.0 0.27 11.1 0.0 2.0 1 1 1 2 2 2 0 Condensin II complex subunit CAP-H2 or CNDH2, C-term TFIIS_M PF07500.14 gi|240103228|ref|YP_002959537.1| - 0.12 12.9 3.2 13 6.3 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS), central domain SMC_N PF02463.19 gi|240103229|ref|YP_002959538.1| - 6.2e-82 274.3 0.0 1.3e-81 273.2 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|240103229|ref|YP_002959538.1| - 5.3e-34 117.0 0.5 2.3e-33 115.0 0.0 2.5 2 0 0 2 2 1 1 SMC proteins Flexible Hinge Domain AAA_15 PF13175.6 gi|240103229|ref|YP_002959538.1| - 4.5e-15 56.2 35.5 5e-13 49.5 0.0 4.7 2 2 0 3 3 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|240103229|ref|YP_002959538.1| - 1.2e-11 45.0 26.8 3.4e-05 23.8 13.0 4.3 3 2 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system Spc7 PF08317.11 gi|240103229|ref|YP_002959538.1| - 6.7e-11 41.6 138.8 0.00048 19.1 15.2 7.7 2 2 6 8 8 8 6 Spc7 kinetochore protein APG6_N PF17675.1 gi|240103229|ref|YP_002959538.1| - 1.2e-07 32.3 155.7 0.001 19.6 26.2 9.3 3 2 4 8 8 8 4 Apg6 coiled-coil region MscS_porin PF12795.7 gi|240103229|ref|YP_002959538.1| - 1.3e-07 31.5 86.4 1.7e-05 24.5 8.1 7.1 3 2 0 6 6 6 3 Mechanosensitive ion channel porin domain AAA_13 PF13166.6 gi|240103229|ref|YP_002959538.1| - 1.9e-05 23.6 26.9 1.9e-05 23.6 26.9 6.8 4 2 3 7 7 7 3 AAA domain CENP-F_leu_zip PF10473.9 gi|240103229|ref|YP_002959538.1| - 2.2e-05 24.5 46.5 0.0005 20.1 13.9 9.2 4 2 3 8 8 8 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_29 PF13555.6 gi|240103229|ref|YP_002959538.1| - 2.6e-05 23.8 0.1 5.1e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Baculo_PEP_C PF04513.12 gi|240103229|ref|YP_002959538.1| - 2.9e-05 24.1 21.6 0.035 14.1 0.8 7.0 3 2 4 7 7 7 3 Baculovirus polyhedron envelope protein, PEP, C terminus ADIP PF11559.8 gi|240103229|ref|YP_002959538.1| - 0.00014 22.0 7.4 0.00014 22.0 7.4 9.2 2 2 6 9 9 9 2 Afadin- and alpha -actinin-Binding DUF1664 PF07889.12 gi|240103229|ref|YP_002959538.1| - 0.00016 21.7 72.5 0.011 15.7 1.5 10.2 3 3 8 11 11 11 4 Protein of unknown function (DUF1664) ATG16 PF08614.11 gi|240103229|ref|YP_002959538.1| - 0.0002 21.7 122.4 0.02 15.1 16.6 8.6 4 2 2 7 7 7 4 Autophagy protein 16 (ATG16) KASH_CCD PF14662.6 gi|240103229|ref|YP_002959538.1| - 0.00023 21.0 11.5 0.00023 21.0 11.5 7.3 3 2 0 5 5 4 2 Coiled-coil region of CCDC155 or KASH ABC_tran_CTD PF16326.5 gi|240103229|ref|YP_002959538.1| - 0.00031 20.9 4.9 0.00031 20.9 4.9 13.0 5 5 7 12 12 10 2 ABC transporter C-terminal domain DUF4407 PF14362.6 gi|240103229|ref|YP_002959538.1| - 0.00057 19.3 79.9 0.1 11.9 8.4 6.3 2 2 3 6 6 6 4 Domain of unknown function (DUF4407) AAA_23 PF13476.6 gi|240103229|ref|YP_002959538.1| - 0.00059 20.4 133.8 0.041 14.4 53.7 8.1 2 2 1 3 3 1 1 AAA domain DUF812 PF05667.11 gi|240103229|ref|YP_002959538.1| - 0.0011 18.0 20.8 0.0011 18.0 20.8 6.1 2 2 2 4 4 4 1 Protein of unknown function (DUF812) Atg14 PF10186.9 gi|240103229|ref|YP_002959538.1| - 0.0012 18.0 116.4 0.0021 17.2 16.7 7.5 2 2 5 7 7 7 4 Vacuolar sorting 38 and autophagy-related subunit 14 TPR_MLP1_2 PF07926.12 gi|240103229|ref|YP_002959538.1| - 0.0021 18.1 11.6 0.0021 18.1 11.6 9.8 4 3 4 8 8 7 3 TPR/MLP1/MLP2-like protein HrpB7 PF09486.10 gi|240103229|ref|YP_002959538.1| - 0.0033 17.8 10.9 0.0033 17.8 10.9 10.4 3 2 6 10 10 9 1 Bacterial type III secretion protein (HrpB7) Snapin_Pallidin PF14712.6 gi|240103229|ref|YP_002959538.1| - 0.006 17.0 3.1 0.006 17.0 3.1 8.8 4 4 3 8 8 7 1 Snapin/Pallidin GAS PF13851.6 gi|240103229|ref|YP_002959538.1| - 0.0089 15.4 135.7 0.0096 15.3 10.4 8.7 2 2 4 7 7 6 4 Growth-arrest specific micro-tubule binding HALZ PF02183.18 gi|240103229|ref|YP_002959538.1| - 0.027 14.7 0.2 0.027 14.7 0.2 7.9 11 1 1 12 12 5 0 Homeobox associated leucine zipper HEPN_AbiA_CTD PF18732.1 gi|240103229|ref|YP_002959538.1| - 0.078 12.9 0.2 0.38 10.7 0.2 2.3 1 0 0 1 1 1 0 HEPN like, Abia C-terminal domain DUF3584 PF12128.8 gi|240103229|ref|YP_002959538.1| - 0.09 10.3 107.4 0.0072 13.9 34.1 4.2 3 2 1 4 4 4 0 Protein of unknown function (DUF3584) Exonuc_VII_L PF02601.15 gi|240103229|ref|YP_002959538.1| - 0.11 12.1 78.4 0.087 12.4 15.2 5.4 2 2 2 4 4 4 0 Exonuclease VII, large subunit IFT57 PF10498.9 gi|240103229|ref|YP_002959538.1| - 0.15 11.0 85.6 0.36 9.8 18.6 7.7 3 2 5 8 8 8 0 Intra-flagellar transport protein 57 DUF5082 PF16888.5 gi|240103229|ref|YP_002959538.1| - 0.44 10.8 98.6 0.074 13.3 1.8 10.8 6 5 2 9 9 8 0 Domain of unknown function (DUF5082) GBR2_CC PF18455.1 gi|240103229|ref|YP_002959538.1| - 0.56 10.4 4.8 19 5.5 0.0 3.4 3 0 0 3 3 2 0 Gamma-aminobutyric acid type B receptor subunit 2 coiled-coil domain WXG100 PF06013.12 gi|240103229|ref|YP_002959538.1| - 0.91 9.8 17.7 18 5.6 0.1 7.4 7 2 1 8 8 6 0 Proteins of 100 residues with WXG Fib_alpha PF08702.10 gi|240103229|ref|YP_002959538.1| - 1 9.5 70.8 0.076 13.2 1.9 8.3 2 2 7 9 9 9 0 Fibrinogen alpha/beta chain family T3SSipB PF16535.5 gi|240103229|ref|YP_002959538.1| - 1.8 9.0 41.6 0.1 13.1 4.1 6.0 3 2 0 5 5 5 0 Type III cell invasion protein SipB DUF4326 PF14216.6 gi|240103229|ref|YP_002959538.1| - 2.9 8.7 7.3 3.8 8.3 0.4 4.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4326) DUF3450 PF11932.8 gi|240103229|ref|YP_002959538.1| - 4.6 6.5 92.6 0.032 13.5 3.4 9.3 3 2 6 10 10 10 0 Protein of unknown function (DUF3450) Sec34 PF04136.15 gi|240103229|ref|YP_002959538.1| - 4.8 7.1 56.9 0.86 9.5 5.2 9.0 3 2 7 10 10 10 0 Sec34-like family LPP PF04728.13 gi|240103229|ref|YP_002959538.1| - 5.4 7.5 27.0 7.9 7.0 0.1 9.1 7 3 1 8 8 8 0 Lipoprotein leucine-zipper Lectin_N PF03954.14 gi|240103229|ref|YP_002959538.1| - 6.9 6.4 28.0 2.3 7.9 0.6 6.5 3 3 5 8 8 8 0 Hepatic lectin, N-terminal domain DUF5122 PF17164.4 gi|240103230|ref|YP_002959539.1| - 9.8e-13 48.2 32.3 0.012 15.9 0.6 7.7 7 0 0 7 7 7 6 Domain of unknown function (DUF5122) beta-propeller Kelch_6 PF13964.6 gi|240103230|ref|YP_002959539.1| - 8.9e-06 25.8 7.3 2.6 8.5 0.1 6.5 7 0 0 7 7 7 2 Kelch motif Kelch_5 PF13854.6 gi|240103230|ref|YP_002959539.1| - 1.6e-05 24.7 12.3 1.5 8.9 0.0 7.5 7 1 0 7 7 7 2 Kelch motif VCBS PF13517.6 gi|240103230|ref|YP_002959539.1| - 0.00014 22.4 37.1 0.56 10.8 1.4 7.3 3 1 4 7 7 7 3 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella RHS PF03527.14 gi|240103230|ref|YP_002959539.1| - 0.0048 16.6 12.5 32 4.4 0.4 6.4 6 0 0 6 6 6 0 RHS protein RCC1_2 PF13540.6 gi|240103230|ref|YP_002959539.1| - 0.0065 16.2 3.6 0.063 13.1 0.3 4.0 5 0 0 5 5 5 1 Regulator of chromosome condensation (RCC1) repeat WD40 PF00400.32 gi|240103230|ref|YP_002959539.1| - 0.012 16.4 8.6 71 4.5 0.1 6.9 7 0 0 7 7 7 0 WD domain, G-beta repeat NHL PF01436.21 gi|240103230|ref|YP_002959539.1| - 0.017 15.1 27.7 19 5.5 0.4 7.7 7 0 0 7 7 7 0 NHL repeat Acyl-CoA_dh_N PF02771.16 gi|240103230|ref|YP_002959539.1| - 0.023 15.4 1.5 55 4.5 0.0 4.6 3 1 3 6 6 6 0 Acyl-CoA dehydrogenase, N-terminal domain Kelch_1 PF01344.25 gi|240103230|ref|YP_002959539.1| - 0.059 13.0 7.2 8.3 6.1 0.1 4.5 4 0 0 4 4 4 0 Kelch motif Kelch_2 PF07646.15 gi|240103230|ref|YP_002959539.1| - 0.12 12.4 8.8 13 5.9 0.1 6.0 8 0 0 8 8 8 0 Kelch motif Kelch_4 PF13418.6 gi|240103230|ref|YP_002959539.1| - 0.14 12.1 28.0 1.2 9.2 0.2 7.2 8 0 0 8 8 8 0 Galactose oxidase, central domain PQQ PF01011.21 gi|240103230|ref|YP_002959539.1| - 4.5 7.4 26.3 29 4.8 0.1 7.1 7 0 0 7 7 7 0 PQQ enzyme repeat PcrB PF01884.17 gi|240103232|ref|YP_002959541.1| - 9.6e-68 228.0 0.0 1.2e-67 227.6 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|240103232|ref|YP_002959541.1| - 1.1e-08 34.8 0.1 6.7e-08 32.3 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|240103232|ref|YP_002959541.1| - 2.8e-08 33.4 1.1 1.4e-06 27.8 0.1 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|240103232|ref|YP_002959541.1| - 6.8e-08 31.7 0.3 3.3e-05 22.9 0.2 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain G3P_antiterm PF04309.12 gi|240103232|ref|YP_002959541.1| - 9.1e-06 25.2 0.7 2.1e-05 24.0 0.2 1.8 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|240103232|ref|YP_002959541.1| - 1.2e-05 24.5 0.3 0.0011 18.0 0.1 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NanE PF04131.14 gi|240103232|ref|YP_002959541.1| - 1.9e-05 23.9 0.6 0.0035 16.6 0.2 2.1 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|240103232|ref|YP_002959541.1| - 0.00015 21.1 0.0 0.0011 18.2 0.0 2.0 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|240103232|ref|YP_002959541.1| - 0.0028 16.8 0.1 0.065 12.3 0.0 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) FMN_dh PF01070.18 gi|240103232|ref|YP_002959541.1| - 0.0028 16.7 0.5 0.0067 15.5 0.0 1.7 2 0 0 2 2 2 1 FMN-dependent dehydrogenase TMP-TENI PF02581.17 gi|240103232|ref|YP_002959541.1| - 0.003 16.9 0.3 0.0071 15.7 0.1 1.7 2 0 0 2 2 2 1 Thiamine monophosphate synthase Usp PF00582.26 gi|240103232|ref|YP_002959541.1| - 0.0061 17.1 0.8 0.81 10.2 0.1 2.2 2 0 0 2 2 2 1 Universal stress protein family NMO PF03060.15 gi|240103232|ref|YP_002959541.1| - 0.0067 15.9 2.5 0.013 14.9 0.3 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase PEP_hydrolase PF09370.10 gi|240103232|ref|YP_002959541.1| - 0.015 14.5 0.1 0.025 13.8 0.1 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like Ribul_P_3_epim PF00834.19 gi|240103232|ref|YP_002959541.1| - 0.015 14.6 0.3 0.027 13.9 0.3 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family HMGL-like PF00682.19 gi|240103232|ref|YP_002959541.1| - 0.053 13.1 0.0 2.3 7.7 0.0 2.0 2 0 0 2 2 2 0 HMGL-like BtpA PF03437.15 gi|240103232|ref|YP_002959541.1| - 0.061 12.7 0.3 0.49 9.8 0.0 2.0 2 0 0 2 2 2 0 BtpA family DUF104 PF01954.16 gi|240103233|ref|YP_002959542.1| - 1e-13 51.5 1.4 1.2e-13 51.3 1.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF123 PF01986.16 gi|240103234|ref|YP_002959543.1| - 1.9e-21 76.4 0.0 2.6e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.24 gi|240103234|ref|YP_002959543.1| - 0.015 15.5 0.0 0.027 14.8 0.0 1.5 1 0 0 1 1 1 0 GIY-YIG catalytic domain STN PF07660.14 gi|240103234|ref|YP_002959543.1| - 0.064 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Secretin and TonB N terminus short domain DUF2095 PF09868.9 gi|240103235|ref|YP_002959544.1| - 2e-64 215.3 2.6 2.4e-64 215.1 2.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) Creatinase_N PF01321.18 gi|240103235|ref|YP_002959544.1| - 0.11 13.1 0.0 0.16 12.6 0.0 1.4 1 0 0 1 1 1 0 Creatinase/Prolidase N-terminal domain Peptidase_M20 PF01546.28 gi|240103236|ref|YP_002959545.1| - 3.3e-37 128.2 1.3 4.4e-37 127.8 1.3 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|240103236|ref|YP_002959545.1| - 2.5e-11 43.5 0.0 6.7e-11 42.1 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Acetyltransf_1 PF00583.25 gi|240103237|ref|YP_002959546.1| - 7.8e-16 58.4 0.1 1.7e-15 57.3 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|240103237|ref|YP_002959546.1| - 1.1e-15 57.8 0.0 2.3e-15 56.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|240103237|ref|YP_002959546.1| - 9.8e-14 51.4 0.0 3.7e-13 49.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|240103237|ref|YP_002959546.1| - 1.6e-11 44.4 0.0 3.6e-11 43.3 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|240103237|ref|YP_002959546.1| - 6.2e-05 22.9 0.0 0.00012 21.9 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|240103237|ref|YP_002959546.1| - 0.00023 21.3 0.0 0.00042 20.4 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Hydrolase_3 PF08282.12 gi|240103238|ref|YP_002959547.1| - 1.2e-26 94.0 0.0 6.5e-18 65.4 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240103238|ref|YP_002959547.1| - 6.1e-14 52.8 0.9 8.8e-12 45.7 0.9 3.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|240103238|ref|YP_002959547.1| - 8.2e-05 23.1 1.7 0.024 15.0 0.1 3.0 1 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|240103238|ref|YP_002959547.1| - 0.00093 19.3 0.1 0.0025 17.9 0.0 1.8 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|240103238|ref|YP_002959547.1| - 0.012 15.2 0.0 0.97 8.9 0.0 2.5 2 1 1 3 3 3 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|240103238|ref|YP_002959547.1| - 0.035 14.2 0.0 0.087 12.9 0.0 1.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase CT_A_B PF02626.15 gi|240103239|ref|YP_002959548.1| - 3.1e-84 282.7 0.0 4.6e-84 282.2 0.0 1.2 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain A and B CT_C_D PF02682.16 gi|240103240|ref|YP_002959549.1| - 1.3e-78 263.4 0.0 1.5e-78 263.2 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D LamB_YcsF PF03746.16 gi|240103242|ref|YP_002959551.1| - 8.6e-108 359.5 0.0 1e-107 359.3 0.0 1.0 1 0 0 1 1 1 1 LamB/YcsF family PIN_6 PF17146.4 gi|240103243|ref|YP_002959552.1| - 4e-20 72.1 0.2 6e-20 71.5 0.2 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|240103243|ref|YP_002959552.1| - 8.7e-07 28.6 0.1 2.5e-06 27.1 0.0 1.7 1 1 1 2 2 2 1 PINc domain ribonuclease Zn-ribbon_8 PF09723.10 gi|240103243|ref|YP_002959552.1| - 0.00038 20.5 0.2 0.00078 19.5 0.2 1.5 1 0 0 1 1 1 1 Zinc ribbon domain Sigma70_r4 PF04545.16 gi|240103243|ref|YP_002959552.1| - 0.0031 17.0 0.0 0.0054 16.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Prok-RING_1 PF14446.6 gi|240103243|ref|YP_002959552.1| - 0.014 15.3 0.5 0.023 14.6 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.7 gi|240103243|ref|YP_002959552.1| - 0.015 15.3 0.1 0.024 14.6 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon PIN_4 PF13638.6 gi|240103243|ref|YP_002959552.1| - 0.026 14.8 0.1 0.057 13.7 0.1 1.7 1 1 0 1 1 1 0 PIN domain HypA PF01155.19 gi|240103243|ref|YP_002959552.1| - 0.027 14.5 0.0 0.05 13.6 0.0 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|240103243|ref|YP_002959552.1| - 0.043 14.0 0.4 0.093 12.9 0.1 1.7 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HTH_8 PF02954.19 gi|240103243|ref|YP_002959552.1| - 0.054 13.3 0.1 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family USP7_C2 PF14533.6 gi|240103243|ref|YP_002959552.1| - 0.067 12.9 0.1 0.086 12.5 0.1 1.1 1 0 0 1 1 1 0 Ubiquitin-specific protease C-terminal ADK_lid PF05191.14 gi|240103243|ref|YP_002959552.1| - 0.11 12.5 1.7 0.21 11.6 1.7 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid DUF4411 PF14367.6 gi|240103243|ref|YP_002959552.1| - 0.15 11.9 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) TF_Zn_Ribbon PF08271.12 gi|240103243|ref|YP_002959552.1| - 0.28 10.7 2.0 5.2 6.7 0.3 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|240103243|ref|YP_002959552.1| - 0.31 11.0 6.7 4.4 7.3 0.5 2.4 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-IS66 PF13005.7 gi|240103243|ref|YP_002959552.1| - 0.35 11.3 3.6 0.85 10.1 0.2 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-HYPF PF07503.12 gi|240103243|ref|YP_002959552.1| - 0.85 9.4 3.0 18 5.2 0.6 2.8 3 0 0 3 3 3 0 HypF finger A2L_zn_ribbon PF08792.10 gi|240103243|ref|YP_002959552.1| - 7.1 6.5 6.1 26 4.7 0.2 2.5 3 0 0 3 3 3 0 A2L zinc ribbon domain Amidase_3 PF01520.18 gi|240103244|ref|YP_002959553.1| - 3.8e-53 180.2 0.0 5.2e-53 179.8 0.0 1.2 1 0 0 1 1 1 1 N-acetylmuramoyl-L-alanine amidase AMIN PF11741.8 gi|240103244|ref|YP_002959553.1| - 1.6e-07 31.3 0.5 0.031 14.4 0.0 3.1 3 0 0 3 3 3 2 AMIN domain AAA_18 PF13238.6 gi|240103245|ref|YP_002959554.1| - 1.9e-21 77.0 1.0 4e-21 75.9 0.4 1.8 2 1 0 2 2 1 1 AAA domain SKI PF01202.22 gi|240103245|ref|YP_002959554.1| - 5.8e-09 36.3 0.1 0.00016 21.8 0.0 2.1 2 0 0 2 2 2 2 Shikimate kinase AAA_17 PF13207.6 gi|240103245|ref|YP_002959554.1| - 6.1e-09 36.4 1.4 4.4e-08 33.6 0.2 2.5 1 1 1 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 gi|240103245|ref|YP_002959554.1| - 2.8e-08 33.7 0.2 0.0066 16.2 0.0 2.4 2 1 0 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|240103245|ref|YP_002959554.1| - 1.8e-06 28.2 0.2 0.00018 21.7 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 gi|240103245|ref|YP_002959554.1| - 7.4e-06 26.4 0.1 0.00011 22.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|240103245|ref|YP_002959554.1| - 9.4e-06 26.0 0.7 5.8e-05 23.4 0.2 2.1 1 1 1 2 2 2 1 AAA domain dNK PF01712.19 gi|240103245|ref|YP_002959554.1| - 1.5e-05 25.0 0.1 0.027 14.3 0.0 2.3 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_22 PF13401.6 gi|240103245|ref|YP_002959554.1| - 3.9e-05 23.9 0.0 0.002 18.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain Cytidylate_kin2 PF13189.6 gi|240103245|ref|YP_002959554.1| - 0.00015 22.0 0.3 0.00043 20.5 0.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_5 PF07728.14 gi|240103245|ref|YP_002959554.1| - 0.00039 20.4 2.2 0.031 14.3 0.1 2.3 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|240103245|ref|YP_002959554.1| - 0.00081 19.3 1.8 0.0029 17.5 0.1 2.1 2 0 0 2 2 2 1 NTPase Thymidylate_kin PF02223.17 gi|240103245|ref|YP_002959554.1| - 0.0018 18.0 0.1 1.4 8.5 0.0 2.1 2 0 0 2 2 2 2 Thymidylate kinase PrcB_C PF14343.6 gi|240103245|ref|YP_002959554.1| - 0.0019 18.3 2.0 0.26 11.4 0.5 2.3 2 0 0 2 2 2 1 PrcB C-terminal PRK PF00485.18 gi|240103245|ref|YP_002959554.1| - 0.0031 17.3 0.0 0.034 13.9 0.0 2.1 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family RuvB_N PF05496.12 gi|240103245|ref|YP_002959554.1| - 0.0037 17.0 0.1 0.012 15.4 0.1 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|240103245|ref|YP_002959554.1| - 0.0043 17.4 0.1 0.0092 16.4 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain UPF0180 PF03698.13 gi|240103245|ref|YP_002959554.1| - 0.0048 17.0 4.3 0.016 15.4 1.2 2.8 3 1 0 3 3 2 1 Uncharacterised protein family (UPF0180) Zeta_toxin PF06414.12 gi|240103245|ref|YP_002959554.1| - 0.0095 15.2 0.6 0.23 10.7 0.0 2.4 2 1 0 2 2 2 1 Zeta toxin AAA_24 PF13479.6 gi|240103245|ref|YP_002959554.1| - 0.02 14.7 0.4 0.031 14.0 0.4 1.6 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|240103245|ref|YP_002959554.1| - 0.02 14.8 0.2 0.088 12.7 0.1 2.0 2 1 0 2 2 2 0 Rad17 P-loop domain CoaE PF01121.20 gi|240103245|ref|YP_002959554.1| - 0.029 14.1 0.2 0.073 12.7 0.0 1.8 2 1 1 3 3 3 0 Dephospho-CoA kinase cobW PF02492.19 gi|240103245|ref|YP_002959554.1| - 0.034 13.7 0.2 0.054 13.1 0.2 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.10 gi|240103245|ref|YP_002959554.1| - 0.034 13.6 0.1 0.059 12.8 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 SRP54 PF00448.22 gi|240103245|ref|YP_002959554.1| - 0.041 13.5 1.1 2.1 7.9 0.2 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|240103245|ref|YP_002959554.1| - 0.041 13.9 1.0 0.16 12.0 0.1 2.2 2 1 1 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ADK PF00406.22 gi|240103245|ref|YP_002959554.1| - 0.041 14.0 0.7 0.74 9.9 0.0 2.3 1 1 1 2 2 2 0 Adenylate kinase AAA_14 PF13173.6 gi|240103245|ref|YP_002959554.1| - 0.042 13.9 0.1 0.11 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|240103245|ref|YP_002959554.1| - 0.057 13.8 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_26 PF13500.6 gi|240103245|ref|YP_002959554.1| - 0.065 13.1 2.5 0.95 9.3 0.2 2.2 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|240103245|ref|YP_002959554.1| - 0.098 12.5 0.1 0.28 11.1 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.18 gi|240103245|ref|YP_002959554.1| - 0.16 11.7 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ArsA_ATPase PF02374.15 gi|240103245|ref|YP_002959554.1| - 0.24 10.5 2.0 0.3 10.2 0.1 1.9 2 0 0 2 2 2 0 Anion-transporting ATPase MMR_HSR1 PF01926.23 gi|240103245|ref|YP_002959554.1| - 0.26 11.4 1.3 1.5 8.9 1.3 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|240103245|ref|YP_002959554.1| - 0.48 10.1 2.4 1.2 8.8 2.4 1.8 1 1 0 1 1 1 0 AAA domain DUF512 PF04459.12 gi|240103246|ref|YP_002959555.1| - 1.2e-11 44.2 0.0 7.6e-11 41.7 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF512) Radical_SAM PF04055.21 gi|240103246|ref|YP_002959555.1| - 9.8e-05 22.8 3.7 0.00021 21.7 0.1 2.7 1 1 2 3 3 3 1 Radical SAM superfamily KASH_CCD PF14662.6 gi|240103247|ref|YP_002959556.1| - 0.00025 21.0 0.8 0.00033 20.5 0.8 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH ZapB PF06005.12 gi|240103247|ref|YP_002959556.1| - 0.0044 17.4 4.9 0.0088 16.5 3.4 2.0 1 1 1 2 2 2 1 Cell division protein ZapB Lge1 PF11488.8 gi|240103247|ref|YP_002959556.1| - 0.02 15.0 0.0 0.033 14.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 Nup54 PF13874.6 gi|240103247|ref|YP_002959556.1| - 0.022 14.9 0.8 0.033 14.3 0.2 1.5 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 YabA PF06156.13 gi|240103247|ref|YP_002959556.1| - 0.023 15.3 0.8 0.036 14.7 0.5 1.5 2 0 0 2 2 1 0 Initiation control protein YabA Arc_C PF18162.1 gi|240103247|ref|YP_002959556.1| - 0.025 14.4 0.2 0.043 13.7 0.2 1.4 1 0 0 1 1 1 0 Arc C-lobe DUF3585 PF12130.8 gi|240103247|ref|YP_002959556.1| - 0.026 14.7 1.3 0.035 14.2 1.3 1.2 1 0 0 1 1 1 0 Bivalent Mical/EHBP Rab binding domain Uds1 PF15456.6 gi|240103247|ref|YP_002959556.1| - 0.13 12.4 0.8 0.23 11.6 0.6 1.4 1 1 0 1 1 1 0 Up-regulated During Septation PspB PF06667.12 gi|240103247|ref|YP_002959556.1| - 0.18 11.9 1.1 0.35 11.0 0.3 1.8 2 0 0 2 2 2 0 Phage shock protein B bZIP_1 PF00170.21 gi|240103247|ref|YP_002959556.1| - 0.23 11.6 6.0 1.6 8.9 2.4 2.8 2 1 1 3 3 3 0 bZIP transcription factor TraC PF07820.12 gi|240103247|ref|YP_002959556.1| - 0.43 10.9 5.5 2.8 8.3 0.4 2.1 1 1 1 2 2 2 0 TraC-like protein JIP_LZII PF16471.5 gi|240103247|ref|YP_002959556.1| - 0.58 10.4 4.3 10 6.4 0.8 2.6 3 0 0 3 3 3 0 JNK-interacting protein leucine zipper II TSC22 PF01166.18 gi|240103247|ref|YP_002959556.1| - 1.6 9.1 5.3 2.6 8.4 1.4 2.6 2 1 1 3 3 3 0 TSC-22/dip/bun family Prefoldin_2 PF01920.20 gi|240103248|ref|YP_002959557.1| - 0.0007 19.5 3.9 0.0007 19.5 3.9 2.1 1 1 1 2 2 2 1 Prefoldin subunit NYD-SP28_assoc PF14775.6 gi|240103248|ref|YP_002959557.1| - 0.0011 19.0 8.8 0.0016 18.5 7.1 2.0 1 1 1 2 2 2 1 Sperm tail C-terminal domain EzrA PF06160.12 gi|240103248|ref|YP_002959557.1| - 0.0013 17.0 6.3 0.0017 16.6 6.3 1.0 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA MerR-DNA-bind PF09278.11 gi|240103248|ref|YP_002959557.1| - 0.0039 17.7 1.4 0.0039 17.7 1.4 2.2 2 0 0 2 2 2 1 MerR, DNA binding YabA PF06156.13 gi|240103248|ref|YP_002959557.1| - 0.01 16.5 7.6 0.014 16.0 6.7 1.8 1 1 0 1 1 1 0 Initiation control protein YabA DUF1664 PF07889.12 gi|240103248|ref|YP_002959557.1| - 0.03 14.3 1.1 0.042 13.9 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF4298 PF14131.6 gi|240103248|ref|YP_002959557.1| - 0.061 13.3 0.6 0.092 12.7 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) Prefoldin PF02996.17 gi|240103248|ref|YP_002959557.1| - 0.066 13.1 0.5 0.066 13.1 0.5 2.2 1 1 1 2 2 2 0 Prefoldin subunit DUF1877 PF08974.10 gi|240103248|ref|YP_002959557.1| - 0.076 13.1 2.8 0.3 11.2 0.8 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1877) p31comet PF06581.12 gi|240103248|ref|YP_002959557.1| - 0.079 12.1 0.4 0.091 11.9 0.4 1.1 1 0 0 1 1 1 0 Mad1 and Cdc20-bound-Mad2 binding CorA PF01544.18 gi|240103248|ref|YP_002959557.1| - 0.17 11.2 4.9 0.19 11.0 4.9 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein FlaC_arch PF05377.11 gi|240103248|ref|YP_002959557.1| - 0.17 12.3 5.5 3.8 8.0 0.3 2.9 1 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Med30 PF11315.8 gi|240103248|ref|YP_002959557.1| - 0.17 12.1 4.1 0.68 10.1 3.9 1.9 1 1 0 1 1 1 0 Mediator complex subunit 30 FapA PF03961.13 gi|240103248|ref|YP_002959557.1| - 0.19 10.3 5.3 0.23 10.0 5.3 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Swi5 PF07061.11 gi|240103248|ref|YP_002959557.1| - 0.24 11.5 4.1 4.6 7.4 0.2 2.5 2 1 1 3 3 2 0 Swi5 GBP_C PF02841.14 gi|240103248|ref|YP_002959557.1| - 0.25 10.7 8.6 0.27 10.6 8.6 1.2 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain zf-C4H2 PF10146.9 gi|240103248|ref|YP_002959557.1| - 0.32 11.3 7.6 0.36 11.1 7.6 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein EMP24_GP25L PF01105.24 gi|240103248|ref|YP_002959557.1| - 0.32 10.9 1.9 0.42 10.5 1.9 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DNA_primase_lrg PF04104.14 gi|240103248|ref|YP_002959557.1| - 0.53 9.6 3.0 1 8.7 2.9 1.5 1 1 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit AAA_11 PF13086.6 gi|240103248|ref|YP_002959557.1| - 0.54 10.0 3.9 0.65 9.7 3.9 1.1 1 0 0 1 1 1 0 AAA domain Atg14 PF10186.9 gi|240103248|ref|YP_002959557.1| - 0.64 9.1 7.2 0.76 8.8 7.2 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 V_ATPase_I PF01496.19 gi|240103248|ref|YP_002959557.1| - 0.67 7.8 3.7 0.65 7.8 3.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Med21 PF11221.8 gi|240103248|ref|YP_002959557.1| - 0.93 9.7 11.7 0.17 12.2 3.2 2.2 1 1 1 2 2 2 0 Subunit 21 of Mediator complex Uso1_p115_C PF04871.13 gi|240103248|ref|YP_002959557.1| - 0.96 9.8 13.2 0.071 13.5 8.0 1.8 2 1 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region TSC22 PF01166.18 gi|240103248|ref|YP_002959557.1| - 1.3 9.4 11.1 0.31 11.4 1.8 2.6 1 1 2 3 3 3 0 TSC-22/dip/bun family OmpH PF03938.14 gi|240103248|ref|YP_002959557.1| - 2.3 8.5 9.7 5.1 7.4 9.7 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) SlyX PF04102.12 gi|240103248|ref|YP_002959557.1| - 3 8.5 7.6 18 6.0 4.4 2.7 2 1 0 2 2 1 0 SlyX DUF5320 PF17253.2 gi|240103248|ref|YP_002959557.1| - 5 8.3 10.0 1.1 10.3 1.3 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5320) kleA_kleC PF17383.2 gi|240103248|ref|YP_002959557.1| - 6.5 7.2 8.1 20 5.6 1.2 2.4 1 1 1 2 2 2 0 Uncharacterized KorC regulated protein A CCDC-167 PF15188.6 gi|240103248|ref|YP_002959557.1| - 8.6 6.8 21.4 2.4 8.6 12.4 2.8 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 HhH-GPD PF00730.25 gi|240103249|ref|YP_002959558.1| - 8.1e-13 48.8 0.0 1.3e-12 48.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Asn_synthase PF00733.21 gi|240103250|ref|YP_002959559.1| - 0.00013 21.7 0.0 0.00023 21.0 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|240103250|ref|YP_002959559.1| - 0.00074 19.1 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|240103250|ref|YP_002959559.1| - 0.0075 15.8 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|240103250|ref|YP_002959559.1| - 0.0078 15.0 0.0 0.016 14.0 0.0 1.6 1 1 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.14 gi|240103250|ref|YP_002959559.1| - 0.08 12.5 0.0 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) DUF4231 PF14015.6 gi|240103250|ref|YP_002959559.1| - 0.21 12.1 0.0 0.32 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) CRS1_YhbY PF01985.21 gi|240103251|ref|YP_002959560.1| - 1.6e-14 53.8 0.2 2.9e-14 53.0 0.2 1.4 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_S19e PF01090.19 gi|240103252|ref|YP_002959561.1| - 1.7e-59 199.5 0.0 1.9e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|240103252|ref|YP_002959561.1| - 2.5e-05 24.1 0.1 0.0011 18.9 0.0 2.8 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain GntR PF00392.21 gi|240103252|ref|YP_002959561.1| - 0.0011 18.5 0.2 0.0049 16.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.6 gi|240103252|ref|YP_002959561.1| - 0.0073 16.3 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|240103252|ref|YP_002959561.1| - 0.096 12.6 0.0 0.3 11.0 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RuvB_C PF05491.13 gi|240103252|ref|YP_002959561.1| - 0.13 12.2 0.0 7.2 6.6 0.0 2.3 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain dsDNA_bind PF01984.20 gi|240103253|ref|YP_002959562.1| - 1.5e-26 92.8 11.5 1.7e-26 92.7 11.5 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PP2C_C PF07830.13 gi|240103253|ref|YP_002959562.1| - 0.038 14.5 0.8 0.086 13.3 0.5 1.8 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain DUF3783 PF12646.7 gi|240103254|ref|YP_002959563.1| - 0.027 14.4 0.0 0.041 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3783) DUF5472 PF17566.2 gi|240103254|ref|YP_002959563.1| - 0.16 11.9 0.4 7.8 6.5 0.0 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5472) TFIIB PF00382.19 gi|240103255|ref|YP_002959564.1| - 7e-45 150.9 2.5 8e-23 80.3 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|240103255|ref|YP_002959564.1| - 4.2e-19 67.8 2.2 6.6e-19 67.2 2.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding HARE-HTH PF05066.13 gi|240103255|ref|YP_002959564.1| - 0.00096 19.5 0.1 0.87 10.0 0.0 3.1 2 1 1 3 3 3 1 HB1, ASXL, restriction endonuclease HTH domain RB_B PF01857.20 gi|240103255|ref|YP_002959564.1| - 0.0012 18.9 0.0 0.0033 17.5 0.0 1.7 1 1 0 1 1 1 1 Retinoblastoma-associated protein B domain HTH_AsnC-type PF13404.6 gi|240103255|ref|YP_002959564.1| - 0.0013 18.6 0.6 0.093 12.6 0.4 3.3 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|240103255|ref|YP_002959564.1| - 0.0058 16.1 0.5 0.0058 16.1 0.5 3.7 5 0 0 5 5 5 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|240103255|ref|YP_002959564.1| - 0.014 14.8 0.0 2.2 7.8 0.1 3.0 2 1 1 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 FYDLN_acid PF09538.10 gi|240103255|ref|YP_002959564.1| - 0.034 14.8 0.0 0.061 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) UPF0253 PF06786.12 gi|240103255|ref|YP_002959564.1| - 0.035 14.4 0.1 0.71 10.2 0.1 2.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) HTH_11 PF08279.12 gi|240103255|ref|YP_002959564.1| - 0.045 13.7 0.4 12 5.9 0.0 2.7 3 0 0 3 3 2 0 HTH domain Ribosomal_S27e PF01667.17 gi|240103255|ref|YP_002959564.1| - 0.053 13.2 0.7 0.089 12.5 0.7 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Sel1 PF08238.12 gi|240103255|ref|YP_002959564.1| - 0.06 14.1 0.4 6.5 7.6 0.0 2.7 2 0 0 2 2 2 0 Sel1 repeat Cyclin_N PF00134.23 gi|240103255|ref|YP_002959564.1| - 0.06 13.1 0.1 2.7 7.8 0.0 2.3 1 1 0 2 2 2 0 Cyclin, N-terminal domain GerE PF00196.19 gi|240103255|ref|YP_002959564.1| - 0.067 12.7 0.0 0.72 9.4 0.1 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family DUF2318 PF10080.9 gi|240103255|ref|YP_002959564.1| - 0.078 13.1 0.3 0.15 12.2 0.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-ribbon_3 PF13248.6 gi|240103255|ref|YP_002959564.1| - 0.078 12.4 1.5 9.8 5.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|240103255|ref|YP_002959564.1| - 0.079 12.9 0.3 0.17 11.8 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.20 gi|240103255|ref|YP_002959564.1| - 0.088 12.9 2.7 5.8 7.0 0.1 2.5 1 1 1 2 2 2 0 Rubredoxin Prim_Zn_Ribbon PF08273.12 gi|240103255|ref|YP_002959564.1| - 0.11 12.8 0.3 0.21 11.9 0.3 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-C2H2_12 PF18658.1 gi|240103255|ref|YP_002959564.1| - 0.22 11.1 0.9 0.4 10.3 0.1 1.9 1 1 1 2 2 2 0 Zinc-finger C2H2-type TFIIB_C_1 PF18542.1 gi|240103255|ref|YP_002959564.1| - 0.45 10.6 4.6 0.65 10.1 0.5 2.8 2 1 0 2 2 2 0 Transcription factor IIB C-terminal module 1 zf-piccolo PF05715.13 gi|240103255|ref|YP_002959564.1| - 0.61 10.3 2.1 12 6.2 2.1 2.2 1 1 0 1 1 1 0 Piccolo Zn-finger zf-RRN7 PF11781.8 gi|240103255|ref|YP_002959564.1| - 0.69 9.7 4.6 7.1 6.4 4.6 2.1 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_Tnp_IS1595 PF12760.7 gi|240103255|ref|YP_002959564.1| - 4.5 7.3 5.7 0.46 10.5 1.0 1.9 2 0 0 2 2 1 0 Transposase zinc-ribbon domain XPG_I PF00867.18 gi|240103256|ref|YP_002959565.1| - 4.3e-28 97.5 0.0 9.5e-28 96.4 0.0 1.6 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|240103256|ref|YP_002959565.1| - 8.7e-23 80.7 0.0 2e-22 79.5 0.0 1.6 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc_N PF02739.16 gi|240103256|ref|YP_002959565.1| - 0.017 15.0 0.0 0.042 13.8 0.0 1.7 2 1 0 2 2 2 0 5'-3' exonuclease, N-terminal resolvase-like domain TPR_8 PF13181.6 gi|240103256|ref|YP_002959565.1| - 0.36 11.2 0.2 0.36 11.2 0.2 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|240103256|ref|YP_002959565.1| - 0.55 10.5 2.5 2.9 8.2 0.4 2.8 1 1 1 2 2 2 0 Tetratricopeptide repeat 5_3_exonuc PF01367.20 gi|240103256|ref|YP_002959565.1| - 0.68 10.6 2.4 0.76 10.4 0.1 2.2 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold PsiE PF06146.12 gi|240103257|ref|YP_002959566.1| - 2e-17 63.3 2.3 4.5e-17 62.2 2.3 1.6 1 0 0 1 1 1 1 Phosphate-starvation-inducible E DUF202 PF02656.15 gi|240103257|ref|YP_002959566.1| - 0.21 12.1 2.6 7.9 7.0 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Vut_1 PF02592.15 gi|240103257|ref|YP_002959566.1| - 0.49 10.7 6.7 0.063 13.6 2.7 1.5 2 0 0 2 2 2 0 Putative vitamin uptake transporter DUF2627 PF11118.8 gi|240103257|ref|YP_002959566.1| - 0.93 10.1 5.3 0.2 12.2 0.6 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF2627) Succ_CoA_lig PF13607.6 gi|240103258|ref|YP_002959567.1| - 2.3e-57 192.7 1.2 8.7e-57 190.8 0.2 2.3 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|240103258|ref|YP_002959567.1| - 2.3e-22 79.7 0.2 1e-20 74.3 0.1 2.5 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|240103258|ref|YP_002959567.1| - 3.1e-13 50.2 0.9 3.1e-13 50.2 0.9 2.5 3 0 0 3 3 3 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|240103258|ref|YP_002959567.1| - 0.081 13.7 0.1 1.4 9.7 0.0 2.9 3 1 1 4 4 4 0 Oxidoreductase family, NAD-binding Rossmann fold DUF4849 PF16141.5 gi|240103258|ref|YP_002959567.1| - 0.21 10.8 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 Putative glycoside hydrolase Family 18, chitinase_18 DUF2065 PF09838.9 gi|240103259|ref|YP_002959568.1| - 4 7.5 7.5 4.3 7.4 2.3 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) Metallophos_2 PF12850.7 gi|240103260|ref|YP_002959569.1| - 1.3e-29 103.5 0.0 1.6e-29 103.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|240103260|ref|YP_002959569.1| - 3.9e-15 56.9 0.0 4.8e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF4081 PF13312.6 gi|240103260|ref|YP_002959569.1| - 0.062 13.5 0.0 0.091 13.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4081) PRC PF05239.16 gi|240103261|ref|YP_002959570.1| - 1.2e-13 50.9 0.6 1.4e-13 50.7 0.6 1.1 1 0 0 1 1 1 1 PRC-barrel domain EB1 PF03271.17 gi|240103261|ref|YP_002959570.1| - 0.081 13.2 0.1 0.17 12.2 0.0 1.7 2 1 0 2 2 2 0 EB1-like C-terminal motif ABC_tran PF00005.27 gi|240103262|ref|YP_002959571.1| - 1.2e-28 100.3 0.0 1.6e-28 99.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103262|ref|YP_002959571.1| - 6e-11 42.7 0.2 0.00013 21.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240103262|ref|YP_002959571.1| - 2.2e-09 37.1 0.2 8.5e-08 31.9 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|240103262|ref|YP_002959571.1| - 5.5e-06 26.0 0.1 1.1e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|240103262|ref|YP_002959571.1| - 9.6e-06 25.4 0.0 1.9e-05 24.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|240103262|ref|YP_002959571.1| - 1.9e-05 25.3 0.2 4.9e-05 23.9 0.1 1.6 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|240103262|ref|YP_002959571.1| - 5.8e-05 22.9 0.1 0.069 12.9 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein T2SSE PF00437.20 gi|240103262|ref|YP_002959571.1| - 0.00022 20.4 0.4 0.00075 18.6 0.2 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|240103262|ref|YP_002959571.1| - 0.00047 20.6 0.1 0.00088 19.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|240103262|ref|YP_002959571.1| - 0.00061 19.1 0.2 0.057 12.6 0.1 2.0 2 0 0 2 2 2 1 NB-ARC domain AAA_19 PF13245.6 gi|240103262|ref|YP_002959571.1| - 0.00076 19.8 0.1 0.0013 19.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|240103262|ref|YP_002959571.1| - 0.0011 19.4 0.1 0.05 14.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|240103262|ref|YP_002959571.1| - 0.0017 18.6 0.3 0.0044 17.3 0.3 1.9 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|240103262|ref|YP_002959571.1| - 0.0034 17.3 0.0 0.0068 16.3 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|240103262|ref|YP_002959571.1| - 0.0083 16.0 0.1 0.017 15.0 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 gi|240103262|ref|YP_002959571.1| - 0.011 15.4 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|240103262|ref|YP_002959571.1| - 0.014 15.3 0.0 0.038 13.9 0.0 1.6 1 1 0 2 2 2 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|240103262|ref|YP_002959571.1| - 0.02 14.8 0.4 0.2 11.6 0.1 2.1 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.6 gi|240103262|ref|YP_002959571.1| - 0.022 15.0 0.1 0.16 12.2 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|240103262|ref|YP_002959571.1| - 0.025 13.9 0.1 0.057 12.8 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TniB PF05621.11 gi|240103262|ref|YP_002959571.1| - 0.034 13.6 0.1 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_18 PF13238.6 gi|240103262|ref|YP_002959571.1| - 0.04 14.5 0.4 0.089 13.3 0.4 1.9 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|240103262|ref|YP_002959571.1| - 0.041 13.5 0.1 0.067 12.8 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|240103262|ref|YP_002959571.1| - 0.044 13.5 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|240103262|ref|YP_002959571.1| - 0.045 13.5 0.0 0.067 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|240103262|ref|YP_002959571.1| - 0.047 12.8 0.0 0.063 12.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_15 PF13175.6 gi|240103262|ref|YP_002959571.1| - 0.054 13.2 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|240103262|ref|YP_002959571.1| - 0.059 13.3 0.5 0.12 12.3 0.1 1.7 2 0 0 2 2 2 0 NACHT domain PIN PF01850.21 gi|240103262|ref|YP_002959571.1| - 0.063 13.8 0.1 0.11 13.1 0.1 1.4 1 1 0 1 1 1 0 PIN domain AAA_14 PF13173.6 gi|240103262|ref|YP_002959571.1| - 0.066 13.3 0.1 0.29 11.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|240103262|ref|YP_002959571.1| - 0.075 13.2 0.3 0.14 12.3 0.3 1.5 1 1 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.12 gi|240103262|ref|YP_002959571.1| - 0.081 12.3 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_7 PF12775.7 gi|240103262|ref|YP_002959571.1| - 0.089 12.3 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|240103262|ref|YP_002959571.1| - 0.12 11.7 0.1 0.25 10.7 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family ATP_bind_1 PF03029.17 gi|240103262|ref|YP_002959571.1| - 0.12 12.1 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF3987 PF13148.6 gi|240103262|ref|YP_002959571.1| - 0.12 11.3 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_5 PF07728.14 gi|240103262|ref|YP_002959571.1| - 0.12 12.3 0.2 0.17 11.9 0.2 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.14 gi|240103262|ref|YP_002959571.1| - 0.18 11.7 0.1 0.34 10.8 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Lactamase_B PF00753.27 gi|240103265|ref|YP_002959574.1| - 1e-25 90.9 0.7 1.3e-25 90.6 0.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|240103265|ref|YP_002959574.1| - 1.1e-06 28.3 0.0 1.6e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MJ1316 PF04457.12 gi|240103266|ref|YP_002959575.1| - 7.6e-13 49.0 0.2 8.4e-13 48.9 0.2 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain Rubrerythrin PF02915.17 gi|240103267|ref|YP_002959576.1| - 3.8e-27 95.4 10.9 8.6e-27 94.2 10.9 1.6 1 0 0 1 1 1 1 Rubrerythrin DUF835 PF05763.12 gi|240103267|ref|YP_002959576.1| - 8.3e-20 70.9 0.0 1.6e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Coat_F PF07875.12 gi|240103267|ref|YP_002959576.1| - 0.00013 22.2 2.8 0.067 13.4 0.0 3.3 3 1 0 3 3 3 2 Coat F domain DUF892 PF05974.12 gi|240103267|ref|YP_002959576.1| - 0.0019 18.3 1.4 0.16 12.0 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF892) DUF2383 PF09537.10 gi|240103267|ref|YP_002959576.1| - 0.0089 16.4 5.9 0.3 11.4 0.2 2.7 3 0 0 3 3 3 2 Domain of unknown function (DUF2383) Ferritin_2 PF13668.6 gi|240103267|ref|YP_002959576.1| - 0.01 16.1 1.2 0.019 15.2 1.2 1.4 1 0 0 1 1 1 0 Ferritin-like domain Myosin_tail_1 PF01576.19 gi|240103267|ref|YP_002959576.1| - 0.062 11.1 2.0 0.087 10.6 2.0 1.1 1 0 0 1 1 1 0 Myosin tail TatD_DNase PF01026.21 gi|240103268|ref|YP_002959577.1| - 6.2e-56 189.6 0.0 7.2e-56 189.4 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 gi|240103268|ref|YP_002959577.1| - 0.0023 17.8 1.7 0.27 11.0 1.7 3.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.20 gi|240103268|ref|YP_002959577.1| - 0.0072 15.7 0.3 0.027 13.8 0.3 1.8 1 1 0 1 1 1 1 Amidohydrolase family DUF4460 PF14687.6 gi|240103268|ref|YP_002959577.1| - 0.027 14.5 0.0 0.13 12.3 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4460) DUF3216 PF11505.8 gi|240103269|ref|YP_002959578.1| - 1.1e-35 121.6 2.9 1.3e-35 121.5 2.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3216) FeS_assembly_P PF01883.19 gi|240103270|ref|YP_002959579.1| - 6e-10 39.2 0.1 1e-09 38.4 0.1 1.4 1 1 0 1 1 1 1 Iron-sulfur cluster assembly protein FeS_assembly_P PF01883.19 gi|240103271|ref|YP_002959580.1| - 4.2e-06 26.8 0.0 6.4e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein UPF0542 PF15086.6 gi|240103272|ref|YP_002959581.1| - 0.14 12.1 0.9 0.36 10.8 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0542 DUF2070 PF09843.9 gi|240103272|ref|YP_002959581.1| - 7 4.8 11.5 9.3 4.4 11.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Desulfoferrodox PF01880.18 gi|240103273|ref|YP_002959582.1| - 1.1e-32 112.5 0.3 1.3e-32 112.3 0.3 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|240103273|ref|YP_002959582.1| - 0.0015 18.8 0.0 0.0018 18.5 0.0 1.1 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY PNTB PF02233.16 gi|240103274|ref|YP_002959583.1| - 0.027 13.4 0.0 0.031 13.2 0.0 1.0 1 0 0 1 1 1 0 NAD(P) transhydrogenase beta subunit adh_short_C2 PF13561.6 gi|240103275|ref|YP_002959584.1| - 2.5e-49 168.0 0.0 3.5e-49 167.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|240103275|ref|YP_002959584.1| - 1.4e-34 119.3 0.0 1.6e-34 119.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|240103275|ref|YP_002959584.1| - 1.5e-07 31.5 0.0 2.7e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|240103275|ref|YP_002959584.1| - 1.5e-05 24.9 0.0 2.2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|240103275|ref|YP_002959584.1| - 0.00085 19.3 0.2 0.0016 18.4 0.0 1.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|240103275|ref|YP_002959584.1| - 0.011 15.7 0.0 0.02 14.9 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase DUF1776 PF08643.10 gi|240103275|ref|YP_002959584.1| - 0.016 14.6 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) UDPG_MGDP_dh_N PF03721.14 gi|240103275|ref|YP_002959584.1| - 0.018 14.6 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CoA_binding_2 PF13380.6 gi|240103275|ref|YP_002959584.1| - 0.082 13.4 0.0 0.82 10.2 0.0 2.1 2 0 0 2 2 2 0 CoA binding domain Polysacc_synt_2 PF02719.15 gi|240103275|ref|YP_002959584.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein FAD_binding_3 PF01494.19 gi|240103275|ref|YP_002959584.1| - 0.13 11.4 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Peptidase_M24 PF00557.24 gi|240103276|ref|YP_002959585.1| - 1.3e-26 93.6 0.2 1.7e-26 93.2 0.2 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|240103276|ref|YP_002959585.1| - 1.4e-13 51.6 0.0 4.4e-12 46.8 0.0 2.2 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain AhpC-TSA PF00578.21 gi|240103277|ref|YP_002959586.1| - 1.7e-34 118.4 0.0 2.1e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|240103277|ref|YP_002959586.1| - 9.7e-19 67.5 0.0 1.2e-18 67.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|240103277|ref|YP_002959586.1| - 8.1e-07 29.2 0.0 2.9e-05 24.1 0.0 2.1 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.6 gi|240103277|ref|YP_002959586.1| - 0.00011 22.5 0.0 0.00015 22.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like DUF899 PF05988.12 gi|240103277|ref|YP_002959586.1| - 0.0019 17.8 0.0 0.0022 17.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Rubrerythrin PF02915.17 gi|240103278|ref|YP_002959587.1| - 1.8e-15 57.6 18.4 2.1e-15 57.3 18.4 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|240103278|ref|YP_002959587.1| - 5.9e-06 26.5 4.4 0.0064 16.7 0.2 2.2 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.10 gi|240103278|ref|YP_002959587.1| - 0.0054 17.1 7.9 0.11 12.9 0.8 2.5 1 1 0 2 2 2 2 Domain of unknown function (DUF2383) DUF2202 PF09968.9 gi|240103278|ref|YP_002959587.1| - 0.0066 16.3 2.3 0.034 14.0 2.3 1.9 1 1 0 1 1 1 1 Uncharacterized protein domain (DUF2202) YPEB PF14620.6 gi|240103278|ref|YP_002959587.1| - 0.014 14.7 0.3 0.018 14.4 0.3 1.1 1 0 0 1 1 1 0 YpeB sporulation OS-D PF03392.13 gi|240103278|ref|YP_002959587.1| - 0.17 12.0 0.8 3.9 7.6 0.2 2.2 2 0 0 2 2 2 0 Insect pheromone-binding family, A10/OS-D Rubrerythrin PF02915.17 gi|240103279|ref|YP_002959588.1| - 3.6e-08 33.9 5.0 4.6e-08 33.5 5.0 1.2 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|240103279|ref|YP_002959588.1| - 4.8e-07 30.1 0.6 8.1e-07 29.4 0.6 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) DUF3231 PF11553.8 gi|240103279|ref|YP_002959588.1| - 0.0054 16.4 0.1 0.014 15.1 0.0 1.5 1 1 1 2 2 2 1 Protein of unknown function (DUF3231) DUF455 PF04305.14 gi|240103279|ref|YP_002959588.1| - 0.016 14.8 0.6 0.019 14.5 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF455) Lactamase_B PF00753.27 gi|240103280|ref|YP_002959589.1| - 1.9e-08 34.5 0.6 3.6e-08 33.6 0.6 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|240103280|ref|YP_002959589.1| - 0.00016 21.1 0.0 0.00026 20.5 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Flavodoxin_1 PF00258.25 gi|240103280|ref|YP_002959589.1| - 0.00047 20.4 0.0 0.0011 19.2 0.0 1.7 2 0 0 2 2 2 1 Flavodoxin Lactamase_B_2 PF12706.7 gi|240103280|ref|YP_002959589.1| - 0.00069 19.2 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|240103280|ref|YP_002959589.1| - 0.031 14.2 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain TPP_enzyme_M PF00205.22 gi|240103280|ref|YP_002959589.1| - 0.056 13.2 0.0 0.4 10.4 0.0 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DUF2193 PF09959.9 gi|240103280|ref|YP_002959589.1| - 0.16 10.4 0.0 0.26 9.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2193) YwiC PF14256.6 gi|240103281|ref|YP_002959590.1| - 0.012 15.9 4.4 0.012 15.9 4.4 2.4 3 0 0 3 3 3 0 YwiC-like protein DUF4264 PF14084.6 gi|240103282|ref|YP_002959591.1| - 0.066 12.9 0.0 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4264) Ubie_methyltran PF01209.18 gi|240103283|ref|YP_002959592.1| - 7.8e-52 175.9 0.0 1e-51 175.5 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|240103283|ref|YP_002959592.1| - 6e-21 75.0 0.0 9.7e-21 74.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240103283|ref|YP_002959592.1| - 7.8e-21 74.5 0.0 1.2e-20 73.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240103283|ref|YP_002959592.1| - 2e-17 63.5 0.0 2.8e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|240103283|ref|YP_002959592.1| - 3.9e-16 59.2 0.0 4.9e-16 58.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|240103283|ref|YP_002959592.1| - 1.5e-10 41.7 0.0 2.3e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|240103283|ref|YP_002959592.1| - 0.00028 20.8 0.0 0.0093 15.8 0.0 2.4 2 1 0 2 2 2 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|240103283|ref|YP_002959592.1| - 0.0003 19.5 0.0 0.0004 19.1 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.12 gi|240103283|ref|YP_002959592.1| - 0.0024 17.5 0.0 0.0032 17.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW N6_Mtase PF02384.16 gi|240103283|ref|YP_002959592.1| - 0.013 14.8 0.0 0.018 14.3 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase DREV PF05219.12 gi|240103283|ref|YP_002959592.1| - 0.014 14.6 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase CheR PF01739.18 gi|240103283|ref|YP_002959592.1| - 0.014 14.9 0.0 0.44 10.0 0.0 2.3 1 1 1 3 3 3 0 CheR methyltransferase, SAM binding domain AviRa PF11599.8 gi|240103283|ref|YP_002959592.1| - 0.024 14.1 0.0 0.034 13.6 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa MTS PF05175.14 gi|240103283|ref|YP_002959592.1| - 0.087 12.4 0.0 0.31 10.6 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|240103283|ref|YP_002959592.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|240103283|ref|YP_002959592.1| - 0.22 11.2 0.0 0.64 9.7 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ABC_tran PF00005.27 gi|240103284|ref|YP_002959593.1| - 3.9e-22 79.2 0.0 1.2e-21 77.7 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103284|ref|YP_002959593.1| - 1.4e-11 44.8 1.8 3.6e-05 23.7 0.0 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|240103284|ref|YP_002959593.1| - 0.0006 19.5 0.0 0.0016 18.1 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|240103284|ref|YP_002959593.1| - 0.0055 16.2 0.0 0.87 9.0 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|240103284|ref|YP_002959593.1| - 0.014 15.7 0.1 0.09 13.0 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|240103284|ref|YP_002959593.1| - 0.015 15.8 0.0 0.19 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|240103284|ref|YP_002959593.1| - 0.025 13.6 0.1 0.057 12.4 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_15 PF13175.6 gi|240103284|ref|YP_002959593.1| - 0.025 14.3 0.0 0.065 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.14 gi|240103284|ref|YP_002959593.1| - 0.028 14.4 0.0 0.062 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) GPAT_N PF14829.6 gi|240103284|ref|YP_002959593.1| - 0.029 14.4 0.1 0.084 12.9 0.0 1.8 1 1 0 1 1 1 0 Glycerol-3-phosphate acyltransferase N-terminal AAA PF00004.29 gi|240103284|ref|YP_002959593.1| - 0.029 14.8 0.1 0.052 14.0 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|240103284|ref|YP_002959593.1| - 0.035 13.8 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|240103284|ref|YP_002959593.1| - 0.041 14.3 0.0 0.087 13.2 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|240103284|ref|YP_002959593.1| - 0.042 13.7 0.1 0.073 13.0 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|240103284|ref|YP_002959593.1| - 0.051 13.5 0.0 0.089 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|240103284|ref|YP_002959593.1| - 0.076 12.7 0.1 0.75 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|240103284|ref|YP_002959593.1| - 0.098 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|240103284|ref|YP_002959593.1| - 0.1 13.0 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 gi|240103284|ref|YP_002959593.1| - 0.12 12.9 0.1 0.19 12.2 0.1 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|240103284|ref|YP_002959593.1| - 0.17 11.6 0.1 6.2 6.5 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Adeno_IVa2 PF02456.15 gi|240103284|ref|YP_002959593.1| - 0.26 10.0 0.0 0.38 9.5 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.22 gi|240103285|ref|YP_002959594.1| - 2.4e-05 24.2 16.7 2.4e-05 24.2 16.7 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component YhdB PF14148.6 gi|240103285|ref|YP_002959594.1| - 0.23 11.6 0.7 0.46 10.6 0.7 1.4 1 0 0 1 1 1 0 YhdB-like protein NMT1 PF09084.11 gi|240103286|ref|YP_002959595.1| - 7.4e-16 58.7 0.6 1.4e-15 57.9 0.6 1.4 1 1 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 gi|240103286|ref|YP_002959595.1| - 9.8e-13 48.4 0.6 4.8e-12 46.1 0.6 1.8 1 1 0 1 1 1 1 NMT1-like family OpuAC PF04069.12 gi|240103286|ref|YP_002959595.1| - 0.00055 19.6 0.2 0.18 11.3 0.0 2.5 1 1 0 2 2 2 2 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_3 PF00497.20 gi|240103286|ref|YP_002959595.1| - 0.0015 18.0 0.1 0.0036 16.8 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 LPAM_1 PF08139.12 gi|240103286|ref|YP_002959595.1| - 0.016 15.7 2.1 0.034 14.7 2.1 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site PBP_like_2 PF12849.7 gi|240103286|ref|YP_002959595.1| - 0.098 12.3 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 PBP superfamily domain Phosphonate-bd PF12974.7 gi|240103286|ref|YP_002959595.1| - 0.13 11.8 0.0 0.29 10.7 0.0 1.5 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein YwcE PF17368.2 gi|240103286|ref|YP_002959595.1| - 0.14 12.9 0.1 0.32 11.7 0.1 1.6 1 0 0 1 1 1 0 Spore morphogenesis and germination YwcE UbiA PF01040.18 gi|240103287|ref|YP_002959596.1| - 6e-38 130.6 23.3 7.5e-38 130.3 23.3 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family UbiD PF01977.16 gi|240103288|ref|YP_002959597.1| - 3e-129 431.5 0.0 3.4e-129 431.3 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Cyt_bd_oxida_II PF02322.15 gi|240103289|ref|YP_002959598.1| - 5.2e-80 269.1 36.4 5.9e-80 268.9 36.4 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II DUF4149 PF13664.6 gi|240103289|ref|YP_002959598.1| - 1.3 9.4 16.7 1.3 9.4 2.4 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4149) DUF1980 PF09323.10 gi|240103289|ref|YP_002959598.1| - 2 8.3 8.8 0.53 10.2 1.7 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1980) Cyt_bd_oxida_I PF01654.17 gi|240103290|ref|YP_002959599.1| - 4.4e-149 496.7 28.7 5e-149 496.5 28.7 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Bax1-I PF01027.20 gi|240103290|ref|YP_002959599.1| - 0.0079 16.0 10.7 0.0079 16.0 10.7 3.9 2 2 1 3 3 3 1 Inhibitor of apoptosis-promoting Bax1 LrgA PF03788.14 gi|240103290|ref|YP_002959599.1| - 0.0081 16.1 0.4 0.0081 16.1 0.4 4.0 3 2 1 4 4 4 1 LrgA family Pept_S41_N PF18294.1 gi|240103290|ref|YP_002959599.1| - 0.14 12.1 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Peptidase S41 N-terminal domain FA_desaturase PF00487.24 gi|240103291|ref|YP_002959600.1| - 0.0015 18.4 2.3 0.0015 18.4 2.3 1.0 1 0 0 1 1 1 1 Fatty acid desaturase DUF4191 PF13829.6 gi|240103291|ref|YP_002959600.1| - 0.017 14.4 3.5 0.018 14.4 3.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) PrgI PF12666.7 gi|240103291|ref|YP_002959600.1| - 0.058 14.1 1.5 0.068 13.9 1.5 1.1 1 0 0 1 1 1 0 PrgI family protein IncD PF17628.2 gi|240103291|ref|YP_002959600.1| - 0.064 13.0 0.4 0.069 12.9 0.4 1.2 1 0 0 1 1 1 0 Inclusion membrane protein D DUF2244 PF10003.9 gi|240103291|ref|YP_002959600.1| - 0.59 9.8 5.4 0.72 9.5 5.4 1.0 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Halogen_Hydrol PF10112.9 gi|240103291|ref|YP_002959600.1| - 1 9.4 2.2 1.1 9.3 2.2 1.0 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Pyr_redox_2 PF07992.14 gi|240103292|ref|YP_002959601.1| - 3.9e-17 62.4 0.0 9.9e-17 61.1 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|240103292|ref|YP_002959601.1| - 4.8e-08 33.5 0.0 0.00052 20.5 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|240103292|ref|YP_002959601.1| - 0.0091 14.9 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 1 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|240103292|ref|YP_002959601.1| - 0.013 14.8 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|240103292|ref|YP_002959601.1| - 0.066 12.8 0.5 0.19 11.3 0.4 2.1 2 1 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|240103292|ref|YP_002959601.1| - 0.088 13.0 0.1 0.22 11.8 0.1 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DUF1641 PF07849.11 gi|240103293|ref|YP_002959602.1| - 3.7e-13 49.1 2.5 5e-13 48.7 0.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) Ferrochelatase PF00762.19 gi|240103294|ref|YP_002959603.1| - 7.1e-60 202.7 0.0 8.9e-60 202.4 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase CbiX PF01903.17 gi|240103294|ref|YP_002959603.1| - 0.13 12.6 0.0 0.5 10.7 0.0 2.0 2 0 0 2 2 2 0 CbiX DUF3887 PF13026.6 gi|240103296|ref|YP_002959605.1| - 0.00046 20.9 0.0 0.0007 20.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) DUF1516 PF07457.11 gi|240103296|ref|YP_002959605.1| - 0.35 11.1 0.1 0.35 11.1 0.1 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF1516) polyprenyl_synt PF00348.17 gi|240103297|ref|YP_002959606.1| - 9.2e-52 175.6 0.0 1.1e-51 175.4 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase RP1-2 PF12042.8 gi|240103297|ref|YP_002959606.1| - 0.16 11.8 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 Tubuliform egg casing silk strands structural domain Proton_antipo_M PF00361.20 gi|240103298|ref|YP_002959607.1| - 2.7e-42 145.0 20.2 2.7e-42 145.0 20.2 2.3 2 1 1 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|240103298|ref|YP_002959607.1| - 0.00045 20.2 0.2 0.00045 20.2 0.2 3.8 3 1 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|240103299|ref|YP_002959608.1| - 2.3e-25 89.4 17.6 2.3e-25 89.4 17.6 2.6 2 0 0 2 2 2 1 Proton-conducting membrane transporter MrpF_PhaF PF04066.13 gi|240103300|ref|YP_002959609.1| - 9.6e-09 35.5 10.0 9.6e-09 35.5 10.0 2.1 2 1 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.14 gi|240103301|ref|YP_002959610.1| - 1.1e-15 57.6 11.1 1.4e-15 57.2 11.1 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit YrhK PF14145.6 gi|240103301|ref|YP_002959610.1| - 0.54 10.2 7.5 0.34 10.8 0.6 2.5 2 1 1 3 3 3 0 YrhK-like protein 7TMR-DISM_7TM PF07695.11 gi|240103301|ref|YP_002959610.1| - 0.72 9.7 9.2 0.16 11.8 1.3 2.0 1 1 1 2 2 2 0 7TM diverse intracellular signalling DUF2583 PF10762.9 gi|240103301|ref|YP_002959610.1| - 5.3 7.5 6.2 1.6 9.2 3.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) DUF4040 PF13244.6 gi|240103302|ref|YP_002959611.1| - 1.5e-11 44.3 7.3 1.5e-11 44.3 7.3 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4040) DUF2070 PF09843.9 gi|240103302|ref|YP_002959611.1| - 0.018 13.3 7.8 0.021 13.1 7.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) UbiA PF01040.18 gi|240103302|ref|YP_002959611.1| - 0.029 13.7 4.4 0.033 13.5 4.4 1.0 1 0 0 1 1 1 0 UbiA prenyltransferase family FixH PF05751.11 gi|240103302|ref|YP_002959611.1| - 0.22 11.5 1.3 4.4 7.3 0.1 2.1 2 0 0 2 2 2 0 FixH DUF2207 PF09972.9 gi|240103302|ref|YP_002959611.1| - 0.67 8.6 3.8 0.69 8.6 3.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CPBP PF02517.16 gi|240103302|ref|YP_002959611.1| - 5 7.6 6.8 3.2 8.2 0.2 2.1 1 1 1 2 2 2 0 CPBP intramembrane metalloprotease MnhB PF04039.13 gi|240103303|ref|YP_002959612.1| - 2.2e-16 60.3 14.0 2.2e-16 60.3 14.0 2.3 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|240103303|ref|YP_002959612.1| - 0.012 15.1 0.1 0.012 15.1 0.1 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2106) Oxidored_q2 PF00420.24 gi|240103304|ref|YP_002959613.1| - 2.1e-23 81.9 5.3 2.7e-23 81.6 5.3 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF1077 PF06417.12 gi|240103304|ref|YP_002959613.1| - 0.28 11.2 2.0 0.23 11.4 1.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1077) MNHE PF01899.16 gi|240103305|ref|YP_002959614.1| - 2.2e-38 131.3 0.4 2.5e-38 131.1 0.4 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 gi|240103306|ref|YP_002959615.1| - 1.3e-55 188.7 27.8 1.3e-55 188.7 27.8 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|240103306|ref|YP_002959615.1| - 5.2e-05 22.7 6.2 5.2e-05 22.7 6.2 2.6 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|240103306|ref|YP_002959615.1| - 0.0011 19.0 0.4 0.0011 19.0 0.4 2.9 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF998 PF06197.13 gi|240103307|ref|YP_002959616.1| - 3.9e-25 88.5 8.8 4.8e-25 88.2 8.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) SieB PF14163.6 gi|240103307|ref|YP_002959616.1| - 0.1 12.1 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 Super-infection exclusion protein B CitMHS PF03600.16 gi|240103309|ref|YP_002959618.1| - 2.7e-09 36.6 25.3 1.7e-08 34.0 16.6 2.5 1 1 1 2 2 2 2 Citrate transporter DUF1646 PF07854.12 gi|240103309|ref|YP_002959618.1| - 0.00078 18.9 0.7 0.00078 18.9 0.7 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1646) AhpC-TSA PF00578.21 gi|240103310|ref|YP_002959619.1| - 6.2e-32 110.1 0.0 8.8e-32 109.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|240103310|ref|YP_002959619.1| - 1.2e-13 51.0 0.0 1.6e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|240103310|ref|YP_002959619.1| - 3.2e-08 33.3 0.0 5.4e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin RibD_C PF01872.17 gi|240103311|ref|YP_002959620.1| - 6.3e-32 111.0 0.0 8.7e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.23 gi|240103311|ref|YP_002959620.1| - 6.6e-25 86.9 0.0 1.1e-24 86.2 0.0 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|240103311|ref|YP_002959620.1| - 1e-15 57.7 0.0 1.6e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 MafB19-like deaminase Inv-AAD PF18785.1 gi|240103311|ref|YP_002959620.1| - 3.8e-06 26.8 0.0 8.8e-06 25.6 0.0 1.6 1 1 0 1 1 1 1 Invertebrate-AID/APOBEC-deaminase APOBEC_N PF08210.11 gi|240103311|ref|YP_002959620.1| - 0.0068 16.3 0.0 0.031 14.2 0.0 1.9 1 1 0 1 1 1 1 APOBEC-like N-terminal domain Lum_binding PF00677.17 gi|240103312|ref|YP_002959621.1| - 7.1e-38 128.5 0.0 5.4e-22 77.6 0.0 2.1 2 0 0 2 2 2 2 Lumazine binding domain Prot_ATP_ID_OB PF16450.5 gi|240103312|ref|YP_002959621.1| - 0.0081 16.1 0.1 0.6 10.1 0.0 2.9 3 0 0 3 3 3 1 Proteasomal ATPase OB C-terminal domain GTP_cyclohydro2 PF00925.20 gi|240103313|ref|YP_002959622.1| - 8.7e-68 227.0 0.0 1.3e-67 226.4 0.0 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase II DHBP_synthase PF00926.19 gi|240103313|ref|YP_002959622.1| - 7e-45 152.9 0.0 1.2e-44 152.1 0.0 1.4 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DUF4224 PF13986.6 gi|240103313|ref|YP_002959622.1| - 0.11 12.4 0.0 0.77 9.7 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4224) NTP_transf_3 PF12804.7 gi|240103313|ref|YP_002959622.1| - 0.16 12.3 0.0 0.44 10.9 0.0 1.7 1 0 0 1 1 1 0 MobA-like NTP transferase domain zf-IS66 PF13005.7 gi|240103313|ref|YP_002959622.1| - 0.24 11.8 0.5 0.62 10.5 0.0 1.9 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DMRL_synthase PF00885.19 gi|240103314|ref|YP_002959623.1| - 3.9e-54 182.3 0.1 4.4e-54 182.1 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Rubrerythrin PF02915.17 gi|240103315|ref|YP_002959624.1| - 9.6e-19 68.1 4.5 1.3e-18 67.7 4.5 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|240103315|ref|YP_002959624.1| - 3.6e-07 30.2 0.8 5.4e-07 29.6 0.8 1.3 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|240103315|ref|YP_002959624.1| - 0.00011 22.5 2.2 0.00018 21.8 0.9 2.0 2 1 0 2 2 2 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.6 gi|240103315|ref|YP_002959624.1| - 0.00014 22.1 0.0 0.00018 21.7 0.0 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.12 gi|240103315|ref|YP_002959624.1| - 0.00033 20.7 4.5 0.01 15.8 2.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF892) Coat_F PF07875.12 gi|240103315|ref|YP_002959624.1| - 0.0057 16.9 0.1 0.01 16.1 0.1 1.3 1 0 0 1 1 1 1 Coat F domain DUF2202 PF09968.9 gi|240103315|ref|YP_002959624.1| - 0.025 14.4 0.8 0.046 13.6 0.5 1.6 2 0 0 2 2 2 0 Uncharacterized protein domain (DUF2202) DUF3231 PF11553.8 gi|240103315|ref|YP_002959624.1| - 0.07 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) TPR_12 PF13424.6 gi|240103315|ref|YP_002959624.1| - 0.92 9.8 5.5 12 6.3 0.0 3.7 3 1 0 3 3 3 0 Tetratricopeptide repeat MS_channel PF00924.18 gi|240103316|ref|YP_002959625.1| - 9.2e-52 175.6 0.9 1.2e-51 175.2 0.9 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|240103316|ref|YP_002959625.1| - 0.022 14.7 2.1 0.022 14.7 2.1 2.4 2 1 1 3 3 3 0 Conserved TM helix Glyco_hydro_42M PF08532.10 gi|240103317|ref|YP_002959626.1| - 3.5e-06 26.7 0.1 8.9e-06 25.3 0.1 1.6 1 1 0 1 1 1 1 Beta-galactosidase trimerisation domain HTH_IclR PF09339.10 gi|240103317|ref|YP_002959626.1| - 0.028 14.2 0.0 0.092 12.6 0.0 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|240103317|ref|YP_002959626.1| - 0.039 13.5 0.0 0.14 11.7 0.0 2.0 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|240103317|ref|YP_002959626.1| - 0.071 13.1 0.0 0.34 10.9 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|240103317|ref|YP_002959626.1| - 0.097 12.6 0.0 0.28 11.1 0.0 1.8 1 0 0 1 1 1 0 MarR family RPA_C PF08784.11 gi|240103317|ref|YP_002959626.1| - 0.16 12.6 0.0 0.27 11.9 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal Glycos_transf_2 PF00535.26 gi|240103318|ref|YP_002959627.1| - 1.4e-31 109.6 0.0 2.2e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|240103318|ref|YP_002959627.1| - 1.4e-23 84.0 0.0 1.9e-23 83.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|240103318|ref|YP_002959627.1| - 1.8e-17 63.9 1.0 1.8e-17 63.9 1.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|240103318|ref|YP_002959627.1| - 5e-11 42.4 0.0 8.2e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|240103318|ref|YP_002959627.1| - 9.2e-06 24.5 3.2 0.0024 16.5 0.0 2.9 2 1 1 3 3 3 2 Chitin synthase Glyco_tranf_2_2 PF10111.9 gi|240103318|ref|YP_002959627.1| - 0.00039 20.0 0.0 0.00062 19.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|240103318|ref|YP_002959627.1| - 0.044 14.3 0.0 0.088 13.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF374 PF04028.13 gi|240103318|ref|YP_002959627.1| - 0.046 13.3 0.1 0.11 12.1 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF374) HTH_20 PF12840.7 gi|240103319|ref|YP_002959628.1| - 8.6e-18 64.2 0.0 1.5e-08 34.5 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|240103319|ref|YP_002959628.1| - 8.6e-11 41.2 0.9 9.7e-06 25.0 0.3 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|240103319|ref|YP_002959628.1| - 4.6e-10 39.1 0.4 2.1e-09 37.0 0.3 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|240103319|ref|YP_002959628.1| - 3.4e-07 30.1 1.3 2.8e-05 24.0 0.1 3.1 2 1 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|240103319|ref|YP_002959628.1| - 4.8e-07 29.5 0.0 0.0019 18.0 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|240103319|ref|YP_002959628.1| - 1.1e-05 25.0 1.4 6.3e-05 22.7 0.0 3.0 3 0 0 3 3 2 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|240103319|ref|YP_002959628.1| - 3.7e-05 23.4 0.0 0.0031 17.3 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_7 PF02796.15 gi|240103319|ref|YP_002959628.1| - 4.7e-05 23.4 0.5 0.0059 16.6 0.1 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_DeoR PF08220.12 gi|240103319|ref|YP_002959628.1| - 9.6e-05 22.0 0.0 0.21 11.4 0.0 2.6 2 0 0 2 2 2 2 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|240103319|ref|YP_002959628.1| - 0.00026 20.8 0.0 0.012 15.5 0.0 2.4 2 0 0 2 2 2 1 MarR family FaeA PF04703.12 gi|240103319|ref|YP_002959628.1| - 0.00031 21.1 0.3 0.015 15.6 0.1 2.5 2 0 0 2 2 2 1 FaeA-like protein HTH_27 PF13463.6 gi|240103319|ref|YP_002959628.1| - 0.00035 21.0 0.1 0.0012 19.3 0.1 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|240103319|ref|YP_002959628.1| - 0.00044 20.0 0.3 0.026 14.3 0.1 2.6 2 0 0 2 2 2 1 HTH DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|240103319|ref|YP_002959628.1| - 0.00051 19.4 0.0 0.0011 18.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Fe_dep_repress PF01325.19 gi|240103319|ref|YP_002959628.1| - 0.00053 20.1 0.1 0.34 11.1 0.0 3.1 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.12 gi|240103319|ref|YP_002959628.1| - 0.00063 19.4 0.1 0.0036 16.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|240103319|ref|YP_002959628.1| - 0.00093 19.3 1.4 0.0042 17.2 0.0 2.9 4 1 1 5 5 2 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|240103319|ref|YP_002959628.1| - 0.0023 18.4 0.1 0.0063 17.0 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|240103319|ref|YP_002959628.1| - 0.0023 17.8 0.1 1.3 9.0 0.1 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB GerE PF00196.19 gi|240103319|ref|YP_002959628.1| - 0.0024 17.4 0.1 0.0084 15.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_29 PF13551.6 gi|240103319|ref|YP_002959628.1| - 0.0034 17.4 1.1 0.012 15.6 0.0 2.6 4 1 0 4 4 2 1 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|240103319|ref|YP_002959628.1| - 0.0042 16.6 0.0 0.037 13.6 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_17 PF12728.7 gi|240103319|ref|YP_002959628.1| - 0.0047 17.1 2.3 0.42 10.8 0.0 4.6 6 0 0 6 6 6 1 Helix-turn-helix domain SpoIIID PF12116.8 gi|240103319|ref|YP_002959628.1| - 0.0074 16.4 0.1 0.12 12.5 0.0 2.3 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_22 PF13309.6 gi|240103319|ref|YP_002959628.1| - 0.031 14.4 0.6 2.2 8.4 0.0 3.1 3 0 0 3 3 3 0 HTH domain HTH_3 PF01381.22 gi|240103319|ref|YP_002959628.1| - 0.036 14.1 0.1 0.15 12.2 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|240103319|ref|YP_002959628.1| - 0.042 13.7 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MerR PF00376.23 gi|240103319|ref|YP_002959628.1| - 0.063 13.1 0.2 0.3 10.9 0.0 2.3 2 0 0 2 2 1 0 MerR family regulatory protein HTH_Crp_2 PF13545.6 gi|240103319|ref|YP_002959628.1| - 0.074 13.0 0.0 2.9 7.9 0.0 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|240103319|ref|YP_002959628.1| - 0.095 12.4 0.1 3 7.5 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family NUMOD1 PF07453.13 gi|240103319|ref|YP_002959628.1| - 0.096 13.0 0.4 0.42 10.9 0.4 2.2 1 0 0 1 1 1 0 NUMOD1 domain TetR_N PF00440.23 gi|240103319|ref|YP_002959628.1| - 0.099 12.5 0.4 0.5 10.2 0.0 2.2 2 1 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_36 PF13730.6 gi|240103319|ref|YP_002959628.1| - 0.11 12.4 0.0 1 9.4 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Bot1p PF12298.8 gi|240103319|ref|YP_002959628.1| - 0.12 12.5 0.0 2.1 8.5 0.0 2.1 2 0 0 2 2 2 0 Eukaryotic mitochondrial regulator protein DDRGK PF09756.9 gi|240103319|ref|YP_002959628.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 DDRGK domain Exosortase_EpsH PF09721.10 gi|240103320|ref|YP_002959629.1| - 1.5e-13 50.9 11.0 2e-13 50.5 11.0 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) IMP_cyclohyd PF07826.11 gi|240103322|ref|YP_002959631.1| - 2.6e-44 151.1 0.0 3.1e-44 150.9 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein DUF1297 PF06973.12 gi|240103323|ref|YP_002959632.1| - 9.4e-19 67.7 0.0 1e-18 67.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|240103324|ref|YP_002959633.1| - 3.1e-32 111.1 0.0 5.2e-32 110.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) DUF1297 PF06973.12 gi|240103324|ref|YP_002959633.1| - 3.9e-16 59.1 0.0 6.2e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) SAICAR_synt PF01259.18 gi|240103325|ref|YP_002959634.1| - 5.9e-33 114.5 0.1 2.1e-32 112.8 0.1 1.7 1 1 0 1 1 1 1 SAICAR synthetase ThiC_Rad_SAM PF01964.18 gi|240103326|ref|YP_002959635.1| - 3.2e-181 602.7 0.0 3.6e-181 602.5 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Thi4 PF01946.17 gi|240103327|ref|YP_002959636.1| - 6.5e-79 264.5 0.6 7.5e-79 264.3 0.6 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|240103327|ref|YP_002959636.1| - 8.1e-11 42.1 6.6 6.9e-05 22.6 2.1 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|240103327|ref|YP_002959636.1| - 1.5e-09 37.8 1.2 2e-09 37.3 1.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|240103327|ref|YP_002959636.1| - 2e-09 37.5 0.4 5.9e-09 36.0 0.4 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|240103327|ref|YP_002959636.1| - 6.5e-09 35.4 7.3 1.8e-05 24.0 1.2 2.5 2 1 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|240103327|ref|YP_002959636.1| - 5.9e-06 25.2 0.6 7.4e-06 24.9 0.6 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|240103327|ref|YP_002959636.1| - 6.1e-06 25.7 0.1 2.3e-05 23.8 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|240103327|ref|YP_002959636.1| - 9.7e-06 25.0 0.5 1.2e-05 24.7 0.5 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|240103327|ref|YP_002959636.1| - 0.00069 18.8 1.8 0.0012 18.0 1.1 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|240103327|ref|YP_002959636.1| - 0.0054 16.7 1.1 0.019 14.9 0.8 2.1 3 0 0 3 3 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|240103327|ref|YP_002959636.1| - 0.0086 15.4 1.3 0.019 14.3 1.3 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|240103327|ref|YP_002959636.1| - 0.024 15.2 2.6 0.05 14.2 0.6 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|240103327|ref|YP_002959636.1| - 0.048 13.0 0.0 0.079 12.2 0.0 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|240103327|ref|YP_002959636.1| - 0.15 10.9 0.6 2.9 6.6 0.3 2.1 2 0 0 2 2 2 0 Tryptophan halogenase ApbA PF02558.16 gi|240103327|ref|YP_002959636.1| - 0.15 11.7 0.5 0.44 10.2 0.2 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA DUF3990 PF13151.6 gi|240103327|ref|YP_002959636.1| - 0.23 11.1 0.0 0.37 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3990) Phos_pyr_kin PF08543.12 gi|240103328|ref|YP_002959637.1| - 1.4e-67 227.6 0.0 1.8e-67 227.3 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|240103328|ref|YP_002959637.1| - 3.1e-53 179.8 1.2 4.2e-53 179.3 0.1 1.8 2 1 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|240103328|ref|YP_002959637.1| - 5.2e-05 22.7 0.1 9.7e-05 21.8 0.1 1.4 1 0 0 1 1 1 1 pfkB family carbohydrate kinase ABC_tran PF00005.27 gi|240103329|ref|YP_002959638.1| - 1.1e-18 68.0 0.0 2.8e-18 66.8 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103329|ref|YP_002959638.1| - 3.6e-10 40.2 0.0 0.00039 20.3 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|240103329|ref|YP_002959638.1| - 4.3e-06 27.0 0.0 1.2e-05 25.7 0.0 1.7 2 0 0 2 2 1 1 AAA domain SMC_N PF02463.19 gi|240103329|ref|YP_002959638.1| - 9.8e-05 21.9 0.0 0.0009 18.7 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Acetyltransf_1 PF00583.25 gi|240103329|ref|YP_002959638.1| - 0.00011 22.4 0.1 0.00057 20.1 0.1 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|240103329|ref|YP_002959638.1| - 0.00065 20.1 0.0 0.0014 19.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|240103329|ref|YP_002959638.1| - 0.00074 19.5 0.0 0.0016 18.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_25 PF13481.6 gi|240103329|ref|YP_002959638.1| - 0.0011 18.6 0.4 0.0035 17.0 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240103329|ref|YP_002959638.1| - 0.0025 18.2 0.1 0.006 17.0 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain FR47 PF08445.10 gi|240103329|ref|YP_002959638.1| - 0.0048 16.8 0.2 0.35 10.9 0.0 2.6 2 0 0 2 2 2 1 FR47-like protein RsgA_GTPase PF03193.16 gi|240103329|ref|YP_002959638.1| - 0.0074 16.2 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|240103329|ref|YP_002959638.1| - 0.012 16.1 0.0 0.035 14.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain GNAT_acetyltr_2 PF13718.6 gi|240103329|ref|YP_002959638.1| - 0.014 14.8 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 AAA_30 PF13604.6 gi|240103329|ref|YP_002959638.1| - 0.024 14.4 0.1 0.58 9.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|240103329|ref|YP_002959638.1| - 0.034 14.0 0.3 0.18 11.7 0.1 2.0 2 0 0 2 2 2 0 NACHT domain DUF4379 PF14311.6 gi|240103329|ref|YP_002959638.1| - 0.043 14.2 0.1 0.11 12.8 0.1 1.7 1 0 0 1 1 1 0 Probable Zinc-ribbon domain AAA_29 PF13555.6 gi|240103329|ref|YP_002959638.1| - 0.049 13.4 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|240103329|ref|YP_002959638.1| - 0.06 13.5 0.3 0.28 11.3 0.2 2.2 2 0 0 2 2 2 0 AAA domain TPR_8 PF13181.6 gi|240103329|ref|YP_002959638.1| - 0.078 13.2 0.1 9.9 6.7 0.0 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat MMR_HSR1 PF01926.23 gi|240103329|ref|YP_002959638.1| - 0.084 13.0 0.1 0.16 12.1 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|240103329|ref|YP_002959638.1| - 0.091 13.0 0.1 0.36 11.1 0.0 2.1 2 0 0 2 2 1 0 AAA domain ATPase PF06745.13 gi|240103329|ref|YP_002959638.1| - 0.14 11.5 0.1 10 5.4 0.0 2.6 3 0 0 3 3 3 0 KaiC DUF3584 PF12128.8 gi|240103329|ref|YP_002959638.1| - 0.2 9.1 0.0 0.3 8.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Nitroreductase PF00881.24 gi|240103331|ref|YP_002959640.1| - 7.8e-29 100.9 0.0 9.7e-29 100.6 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|240103331|ref|YP_002959640.1| - 1.2e-09 38.1 0.0 2.3e-05 24.1 0.3 2.5 1 1 0 2 2 2 2 Putative TM nitroreductase PadR PF03551.14 gi|240103332|ref|YP_002959641.1| - 3.3e-18 65.4 0.6 5.7e-18 64.7 0.6 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|240103332|ref|YP_002959641.1| - 0.00067 19.5 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HisKA PF00512.25 gi|240103332|ref|YP_002959641.1| - 0.0043 17.1 0.4 0.058 13.4 0.1 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain RTP PF02334.16 gi|240103332|ref|YP_002959641.1| - 0.008 16.8 0.0 0.025 15.2 0.0 1.9 1 1 1 2 2 2 1 Replication terminator protein DUF1495 PF07381.11 gi|240103332|ref|YP_002959641.1| - 0.014 15.2 0.0 0.05 13.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|240103332|ref|YP_002959641.1| - 0.019 15.0 0.1 0.042 13.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_5 PF01022.20 gi|240103332|ref|YP_002959641.1| - 0.04 13.8 0.1 0.6 10.0 0.1 2.4 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|240103332|ref|YP_002959641.1| - 0.05 13.8 0.0 0.096 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|240103332|ref|YP_002959641.1| - 0.09 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) baeRF_family7 PF18849.1 gi|240103332|ref|YP_002959641.1| - 0.11 12.7 0.1 0.14 12.3 0.1 1.1 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 7 Dynein_attach_N PF15867.5 gi|240103332|ref|YP_002959641.1| - 0.37 10.8 1.3 0.51 10.3 0.2 1.7 2 0 0 2 2 2 0 Dynein attachment factor N-terminus CDC48_2 PF02933.17 gi|240103333|ref|YP_002959642.1| - 0.00044 20.0 0.2 0.0016 18.2 0.0 2.1 2 1 1 3 3 3 1 Cell division protein 48 (CDC48), domain 2 HhH-GPD PF00730.25 gi|240103334|ref|YP_002959643.1| - 3.7e-19 69.2 0.0 5.2e-19 68.7 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|240103334|ref|YP_002959643.1| - 4.1e-08 32.7 0.0 9.3e-08 31.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|240103334|ref|YP_002959643.1| - 0.0087 16.4 7.9 0.015 15.7 7.9 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III Scm3 PF10384.9 gi|240103334|ref|YP_002959643.1| - 0.035 13.8 0.2 0.13 12.0 0.1 1.9 2 0 0 2 2 2 0 Centromere protein Scm3 HHH_5 PF14520.6 gi|240103334|ref|YP_002959643.1| - 0.064 13.9 0.4 0.97 10.1 0.1 2.3 3 1 1 4 4 4 0 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|240103334|ref|YP_002959643.1| - 0.12 12.5 0.0 15 5.8 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF2226 PF09987.9 gi|240103335|ref|YP_002959644.1| - 0.0046 16.4 0.0 0.0068 15.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2226) LPD3 PF18798.1 gi|240103336|ref|YP_002959645.1| - 0.046 14.0 1.5 0.61 10.4 0.1 3.0 2 1 1 3 3 3 0 Large polyvalent protein-associated domain 3 Arch_flagellin PF01917.16 gi|240103336|ref|YP_002959645.1| - 0.12 12.5 0.1 0.12 12.5 0.1 2.9 3 1 0 3 3 3 0 Archaebacterial flagellin Mucin PF01456.17 gi|240103336|ref|YP_002959645.1| - 0.17 11.9 11.2 6.3 6.8 0.0 2.2 2 0 0 2 2 2 0 Mucin-like glycoprotein DUF4834 PF16118.5 gi|240103336|ref|YP_002959645.1| - 0.82 10.7 2.8 4.6 8.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4834) PQQ_3 PF13570.6 gi|240103337|ref|YP_002959646.1| - 3.4 8.3 12.7 4.1 8.0 0.2 4.6 5 0 0 5 5 5 0 PQQ-like domain DUF5616 PF18481.1 gi|240103338|ref|YP_002959647.1| - 7.7e-38 130.0 0.0 1.1e-37 129.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|240103338|ref|YP_002959647.1| - 3.2e-24 84.4 1.4 5.2e-24 83.7 1.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) HD PF01966.22 gi|240103339|ref|YP_002959648.1| - 0.00067 19.9 0.4 0.0021 18.3 0.1 1.9 1 1 1 2 2 2 1 HD domain DUF1935 PF09149.10 gi|240103339|ref|YP_002959648.1| - 0.014 15.7 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1935) Sporozoite_P67 PF05642.11 gi|240103340|ref|YP_002959649.1| - 0.12 10.4 0.6 0.14 10.3 0.6 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen Cyt_bd_oxida_II PF02322.15 gi|240103341|ref|YP_002959650.1| - 0.073 12.4 4.9 2.5 7.4 0.6 2.1 2 0 0 2 2 2 0 Cytochrome bd terminal oxidase subunit II PIN_9 PF18477.1 gi|240103342|ref|YP_002959651.1| - 1.2e-32 112.7 0.1 1.4e-32 112.5 0.1 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|240103342|ref|YP_002959651.1| - 3.8e-07 30.4 0.0 4.9e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.6 gi|240103342|ref|YP_002959651.1| - 8.1e-06 26.2 0.3 0.00058 20.1 0.3 2.2 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|240103342|ref|YP_002959651.1| - 0.0008 19.1 0.0 0.0015 18.3 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_12 PF16289.5 gi|240103342|ref|YP_002959651.1| - 0.12 12.8 0.1 0.68 10.4 0.0 1.8 1 1 1 2 2 2 0 PIN domain GTP_EFTU PF00009.27 gi|240103343|ref|YP_002959652.1| - 3.6e-37 127.8 0.6 2.2e-36 125.2 0.6 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|240103343|ref|YP_002959652.1| - 2.5e-32 111.0 0.4 6.5e-32 109.6 0.2 1.9 2 0 0 2 2 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|240103343|ref|YP_002959652.1| - 3e-11 43.5 1.8 1e-10 41.8 1.8 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|240103343|ref|YP_002959652.1| - 5.8e-06 26.4 0.0 9.8e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase Nop10p PF04135.12 gi|240103343|ref|YP_002959652.1| - 9.1e-05 22.4 0.7 0.00016 21.6 0.7 1.3 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RsgA_GTPase PF03193.16 gi|240103343|ref|YP_002959652.1| - 0.00042 20.3 0.2 0.0081 16.1 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase RecR PF02132.15 gi|240103343|ref|YP_002959652.1| - 0.00045 19.7 0.3 0.00084 18.9 0.3 1.4 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|240103343|ref|YP_002959652.1| - 0.0026 15.7 0.0 0.0034 15.3 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.6 gi|240103343|ref|YP_002959652.1| - 0.0034 16.7 3.0 0.0076 15.6 3.0 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.8 gi|240103343|ref|YP_002959652.1| - 0.0044 16.9 1.8 0.0079 16.1 1.8 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) PduV-EutP PF10662.9 gi|240103343|ref|YP_002959652.1| - 0.007 16.1 0.5 0.46 10.2 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|240103343|ref|YP_002959652.1| - 0.019 14.5 0.1 4.3 6.9 0.0 2.5 2 0 0 2 2 2 0 Ferrous iron transport protein B HypA PF01155.19 gi|240103343|ref|YP_002959652.1| - 0.033 14.2 0.0 0.077 13.0 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|240103343|ref|YP_002959652.1| - 0.034 13.9 6.7 0.081 12.7 6.7 1.7 1 1 0 1 1 1 0 zinc-ribbon domain G-alpha PF00503.20 gi|240103343|ref|YP_002959652.1| - 0.069 12.3 0.1 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 G-protein alpha subunit NRDD PF13597.6 gi|240103343|ref|YP_002959652.1| - 0.11 11.3 0.2 0.16 10.7 0.2 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-NADH-PPase PF09297.11 gi|240103343|ref|YP_002959652.1| - 0.19 11.4 2.9 1.1 9.0 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.6 gi|240103343|ref|YP_002959652.1| - 0.45 10.2 5.8 0.19 11.4 0.5 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.10 gi|240103343|ref|YP_002959652.1| - 0.51 10.5 3.9 7 6.9 0.3 2.5 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|240103343|ref|YP_002959652.1| - 1.3 9.1 5.2 2.8 8.0 0.3 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|240103343|ref|YP_002959652.1| - 2 8.0 5.7 21 4.7 5.7 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding DUF4139 PF13598.6 gi|240103344|ref|YP_002959653.1| - 0.00013 21.7 0.0 0.0018 18.0 0.0 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4139) ATP-grasp_5 PF13549.6 gi|240103345|ref|YP_002959654.1| - 7e-84 280.7 0.3 8e-84 280.5 0.3 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|240103345|ref|YP_002959654.1| - 1.2e-09 38.1 0.3 2e-09 37.3 0.3 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|240103345|ref|YP_002959654.1| - 0.00022 20.8 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|240103345|ref|YP_002959654.1| - 0.0003 20.6 0.1 0.00072 19.4 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.17 gi|240103345|ref|YP_002959654.1| - 0.00037 20.0 0.2 0.0012 18.4 0.1 1.8 1 1 1 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF5126 PF17166.4 gi|240103345|ref|YP_002959654.1| - 0.037 13.9 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5126) PI_PP_C PF18365.1 gi|240103345|ref|YP_002959654.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoinositide phosphatase C-terminal domain Fer4_NifH PF00142.18 gi|240103345|ref|YP_002959654.1| - 0.11 11.9 0.1 0.17 11.3 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Cas_Cas6 PF01881.16 gi|240103346|ref|YP_002959655.1| - 4.2e-32 111.7 0.0 5.6e-32 111.3 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas6 LexA_DNA_bind PF01726.16 gi|240103347|ref|YP_002959656.1| - 5e-06 26.2 0.2 1e-05 25.2 0.2 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_27 PF13463.6 gi|240103347|ref|YP_002959656.1| - 0.00062 20.2 0.3 0.013 16.0 0.1 2.7 2 1 0 2 2 2 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|240103347|ref|YP_002959656.1| - 0.034 14.5 0.0 0.056 13.8 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor TrmB PF01978.19 gi|240103347|ref|YP_002959656.1| - 0.059 13.3 0.4 0.15 12.0 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|240103347|ref|YP_002959656.1| - 0.12 12.0 0.2 0.44 10.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|240103347|ref|YP_002959656.1| - 0.14 12.1 0.0 0.36 10.8 0.0 1.7 1 1 0 1 1 1 0 MarR family DevR PF01905.16 gi|240103349|ref|YP_002959658.1| - 1.7e-74 250.3 0.0 2e-74 250.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Cas5d PF09704.10 gi|240103350|ref|YP_002959659.1| - 0.0013 18.6 0.3 0.0021 18.0 0.3 1.4 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.29 gi|240103351|ref|YP_002959660.1| - 7.4e-17 61.7 1.4 3.5e-14 53.0 0.0 3.0 2 1 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|240103351|ref|YP_002959660.1| - 1.7e-10 41.2 0.1 7.8e-10 39.1 0.1 2.2 1 1 1 2 2 2 1 Helicase conserved C-terminal domain HD_6 PF18019.1 gi|240103352|ref|YP_002959661.1| - 0.0013 18.9 0.0 0.0017 18.5 0.0 1.3 1 0 0 1 1 1 1 HD domain HD PF01966.22 gi|240103352|ref|YP_002959661.1| - 0.057 13.6 0.1 0.084 13.1 0.1 1.4 1 0 0 1 1 1 0 HD domain HTH_21 PF13276.6 gi|240103352|ref|YP_002959661.1| - 0.083 13.0 0.1 0.19 11.9 0.1 1.5 1 0 0 1 1 1 0 HTH-like domain Cas_Csa4 PF09703.10 gi|240103353|ref|YP_002959662.1| - 3.6e-84 283.1 0.0 4.7e-84 282.7 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa4) UPF0228 PF05727.11 gi|240103353|ref|YP_002959662.1| - 0.18 11.6 0.0 0.58 10.0 0.0 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0228) Cas_Cas6 PF01881.16 gi|240103354|ref|YP_002959663.1| - 9.2e-21 74.9 0.0 1.4e-20 74.3 0.0 1.3 1 0 0 1 1 1 1 CRISPR associated protein Cas6 PDDEXK_1 PF12705.7 gi|240103355|ref|YP_002959664.1| - 0.0044 17.0 0.0 0.021 14.7 0.0 1.9 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily CRISPR_Cas2 PF09827.9 gi|240103356|ref|YP_002959665.1| - 2.7e-23 81.9 0.5 3e-23 81.8 0.5 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 SHOCT PF09851.9 gi|240103356|ref|YP_002959665.1| - 0.089 12.6 0.2 0.16 11.7 0.2 1.5 1 0 0 1 1 1 0 Short C-terminal domain Bact_lectin PF18483.1 gi|240103357|ref|YP_002959666.1| - 1.2e-66 224.5 4.7 6.1e-33 114.5 0.1 3.0 3 0 0 3 3 3 2 Bacterial lectin PEGA PF08308.11 gi|240103357|ref|YP_002959666.1| - 2.8e-18 65.6 0.4 4.3e-16 58.5 0.5 3.1 2 0 0 2 2 2 1 PEGA domain Lectin_leg-like PF03388.13 gi|240103357|ref|YP_002959666.1| - 8e-14 51.5 0.1 0.0004 19.8 0.0 4.1 4 0 0 4 4 4 3 Legume-like lectin family Lectin_legB PF00139.19 gi|240103357|ref|YP_002959666.1| - 4.3e-07 29.7 0.0 0.48 9.9 0.0 4.5 4 0 0 4 4 4 2 Legume lectin domain Laminin_G_2 PF02210.24 gi|240103357|ref|YP_002959666.1| - 2.6e-05 24.8 0.0 0.14 12.8 0.0 2.8 2 0 0 2 2 2 2 Laminin G domain CarboxypepD_reg PF13620.6 gi|240103357|ref|YP_002959666.1| - 0.0025 18.0 0.0 0.0025 18.0 0.0 2.7 2 0 0 2 2 1 1 Carboxypeptidase regulatory-like domain PCC_BT PF18140.1 gi|240103357|ref|YP_002959666.1| - 0.0052 17.1 0.1 7.3 7.0 0.0 3.4 4 0 0 4 4 4 1 Propionyl-coenzyme A carboxylase BT domain CarbopepD_reg_2 PF13715.6 gi|240103357|ref|YP_002959666.1| - 0.013 15.5 0.3 0.05 13.6 0.3 2.1 1 1 0 1 1 1 0 CarboxypepD_reg-like domain Flg_hook PF02120.16 gi|240103357|ref|YP_002959666.1| - 0.06 13.2 1.9 6.8 6.7 0.1 3.5 4 1 0 4 4 4 0 Flagellar hook-length control protein FliK Mucin PF01456.17 gi|240103357|ref|YP_002959666.1| - 0.066 13.2 14.7 0.13 12.2 14.7 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein FSA_C PF10479.9 gi|240103357|ref|YP_002959666.1| - 0.32 9.1 7.6 0.47 8.5 7.6 1.1 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus DUF2203 PF09969.9 gi|240103357|ref|YP_002959666.1| - 1.4 9.7 3.4 0.89 10.3 0.5 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) AAA_25 PF13481.6 gi|240103358|ref|YP_002959667.1| - 0.19 11.3 0.1 0.29 10.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain Thioredoxin_3 PF13192.6 gi|240103359|ref|YP_002959668.1| - 1.4e-22 79.5 0.0 7.1e-15 54.8 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 gi|240103359|ref|YP_002959668.1| - 2.3e-12 46.8 0.1 6.2e-05 22.9 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin ABC_transp_aux PF09822.9 gi|240103359|ref|YP_002959668.1| - 1.5e-09 37.7 0.0 0.0005 19.6 0.0 2.0 2 0 0 2 2 2 2 ABC-type uncharacterized transport system Glutaredoxin PF00462.24 gi|240103359|ref|YP_002959668.1| - 1.6e-09 37.8 1.1 0.00013 22.1 0.2 2.7 2 1 0 2 2 2 2 Glutaredoxin Thioredoxin_2 PF13098.6 gi|240103359|ref|YP_002959668.1| - 3.6e-08 33.8 5.8 0.0021 18.5 0.2 3.8 2 2 0 2 2 2 2 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|240103359|ref|YP_002959668.1| - 0.0002 21.2 0.1 0.0011 18.8 0.1 2.0 2 0 0 2 2 2 1 Thioredoxin TraF PF13728.6 gi|240103359|ref|YP_002959668.1| - 0.00072 19.4 0.0 0.27 11.0 0.0 2.5 2 1 0 2 2 2 2 F plasmid transfer operon protein DUF836 PF05768.14 gi|240103359|ref|YP_002959668.1| - 0.0013 19.1 0.4 0.084 13.3 0.0 2.4 2 1 0 2 2 2 1 Glutaredoxin-like domain (DUF836) CGGC PF08821.11 gi|240103359|ref|YP_002959668.1| - 0.056 13.6 0.1 1.2 9.3 0.1 2.1 2 0 0 2 2 2 0 CGGC domain HEPN_RES_NTD1 PF18870.1 gi|240103359|ref|YP_002959668.1| - 0.06 13.5 0.0 0.67 10.1 0.0 2.3 2 0 0 2 2 2 0 HEPN/RES N-terminal domain 1 DUF393 PF04134.12 gi|240103359|ref|YP_002959668.1| - 0.066 14.6 0.0 0.36 12.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF393 Thioredoxin_8 PF13905.6 gi|240103359|ref|YP_002959668.1| - 0.099 13.0 0.0 13 6.2 0.0 3.5 3 1 0 3 3 3 0 Thioredoxin-like HTH_20 PF12840.7 gi|240103360|ref|YP_002959669.1| - 5.3e-10 39.2 0.2 1.5e-05 24.9 0.0 2.9 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|240103360|ref|YP_002959669.1| - 1.5e-06 27.6 2.2 0.052 13.1 0.0 3.1 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|240103360|ref|YP_002959669.1| - 2.4e-06 27.3 1.3 0.0015 18.3 0.3 2.8 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|240103360|ref|YP_002959669.1| - 0.0002 21.2 0.0 0.035 14.0 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|240103360|ref|YP_002959669.1| - 0.0099 15.8 1.4 0.98 9.4 0.0 2.8 3 0 0 3 3 3 1 HTH domain HTH_AsnC-type PF13404.6 gi|240103360|ref|YP_002959669.1| - 0.011 15.6 0.0 0.26 11.2 0.1 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_34 PF13601.6 gi|240103360|ref|YP_002959669.1| - 0.012 15.7 0.4 1.8 8.8 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain PadR PF03551.14 gi|240103360|ref|YP_002959669.1| - 0.04 13.9 0.0 0.097 12.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FUR PF01475.19 gi|240103360|ref|YP_002959669.1| - 0.082 13.1 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family Takusan PF04822.13 gi|240103360|ref|YP_002959669.1| - 0.13 12.1 4.0 0.12 12.3 1.0 2.2 2 0 0 2 2 2 0 Takusan IF2_N PF04760.15 gi|240103360|ref|YP_002959669.1| - 0.2 11.5 1.4 0.45 10.4 0.0 2.3 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region Fer4 PF00037.27 gi|240103361|ref|YP_002959670.1| - 7.6e-16 57.2 12.2 2.1e-08 33.6 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|240103361|ref|YP_002959670.1| - 1.9e-11 43.5 11.8 1.5e-06 28.0 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240103361|ref|YP_002959670.1| - 8.2e-11 42.3 6.0 1.6e-05 25.4 0.3 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|240103361|ref|YP_002959670.1| - 2.1e-10 40.0 10.8 1.6e-05 24.7 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|240103361|ref|YP_002959670.1| - 6.6e-09 36.6 8.0 0.00028 21.7 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|240103361|ref|YP_002959670.1| - 1.9e-08 34.3 11.0 0.0002 21.4 0.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|240103361|ref|YP_002959670.1| - 2.8e-08 33.8 9.7 6.5e-08 32.6 9.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240103361|ref|YP_002959670.1| - 7.8e-08 32.4 19.6 7.6e-06 26.0 11.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|240103361|ref|YP_002959670.1| - 7e-06 26.4 7.7 0.0043 17.5 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|240103361|ref|YP_002959670.1| - 2.4e-05 24.5 6.0 2.8e-05 24.3 6.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|240103361|ref|YP_002959670.1| - 2.8e-05 24.3 12.4 0.0016 18.8 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|240103361|ref|YP_002959670.1| - 3.9e-05 24.1 7.0 0.039 14.5 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|240103361|ref|YP_002959670.1| - 0.00085 19.8 12.6 0.088 13.4 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|240103361|ref|YP_002959670.1| - 0.025 15.5 17.5 0.054 14.4 4.3 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|240103361|ref|YP_002959670.1| - 0.097 13.4 13.8 0.39 11.5 2.8 2.7 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|240103361|ref|YP_002959670.1| - 1.3 9.9 14.3 2.3 9.1 3.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|240103361|ref|YP_002959670.1| - 5.2 7.2 9.3 31 4.7 9.3 2.2 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster FAD_binding_3 PF01494.19 gi|240103362|ref|YP_002959671.1| - 7.8e-18 64.8 1.2 4.2e-16 59.1 1.2 2.8 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|240103362|ref|YP_002959671.1| - 4e-13 49.2 0.0 7.4e-13 48.3 0.0 1.4 1 1 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.24 gi|240103362|ref|YP_002959671.1| - 6.8e-11 42.4 2.6 0.00023 20.9 1.4 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|240103362|ref|YP_002959671.1| - 8.7e-10 38.2 1.1 0.0002 20.6 0.5 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|240103362|ref|YP_002959671.1| - 2.3e-09 37.1 2.0 6.4e-09 35.7 0.8 2.2 3 1 0 3 3 3 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|240103362|ref|YP_002959671.1| - 1.2e-06 27.7 0.7 0.0026 16.7 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|240103362|ref|YP_002959671.1| - 2.1e-06 27.2 3.4 9.9e-06 25.0 2.1 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|240103362|ref|YP_002959671.1| - 4e-05 23.8 2.1 4.9e-05 23.5 0.2 2.2 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|240103362|ref|YP_002959671.1| - 7.2e-05 21.7 0.5 0.00084 18.2 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|240103362|ref|YP_002959671.1| - 0.0007 18.9 1.5 0.003 16.8 0.1 2.3 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|240103362|ref|YP_002959671.1| - 0.001 18.3 1.6 0.0015 17.7 0.5 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|240103362|ref|YP_002959671.1| - 0.0063 16.4 0.2 0.014 15.2 0.2 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDI PF00996.18 gi|240103362|ref|YP_002959671.1| - 0.021 13.4 0.0 0.28 9.7 0.0 2.1 2 0 0 2 2 2 0 GDP dissociation inhibitor Pyr_redox PF00070.27 gi|240103362|ref|YP_002959671.1| - 0.044 14.4 3.0 17 6.0 0.1 3.7 3 1 1 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|240103362|ref|YP_002959671.1| - 0.087 11.9 0.0 0.2 10.7 0.0 1.5 2 0 0 2 2 2 0 Squalene epoxidase DUF596 PF04591.12 gi|240103362|ref|YP_002959671.1| - 0.099 12.8 0.0 0.26 11.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function, DUF596 BCAS2 PF05700.11 gi|240103362|ref|YP_002959671.1| - 0.11 12.1 0.3 0.18 11.5 0.3 1.2 1 0 0 1 1 1 0 Breast carcinoma amplified sequence 2 (BCAS2) Yip1 PF04893.17 gi|240103364|ref|YP_002959673.1| - 0.06 13.1 31.0 0.021 14.6 27.6 1.9 1 1 1 2 2 2 0 Yip1 domain Topoisom_bac PF01131.20 gi|240103365|ref|YP_002959674.1| - 1.1e-134 449.6 0.2 1.3e-134 449.3 0.2 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|240103365|ref|YP_002959674.1| - 7.1e-20 71.2 0.6 4.6e-19 68.5 0.0 2.4 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|240103365|ref|YP_002959674.1| - 9.6e-14 50.9 2.8 2.1e-13 49.8 2.8 1.6 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger DUF4364 PF14277.6 gi|240103365|ref|YP_002959674.1| - 0.018 14.8 2.2 0.067 12.9 1.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) DUF2250 PF10007.9 gi|240103365|ref|YP_002959674.1| - 1.7 8.8 4.0 19 5.5 0.1 3.9 4 0 0 4 4 4 0 Uncharacterized protein conserved in archaea (DUF2250) Lar_restr_allev PF14354.6 gi|240103365|ref|YP_002959674.1| - 4.4 7.8 9.2 0.25 11.7 0.3 2.8 3 0 0 3 3 3 0 Restriction alleviation protein Lar TBP PF00352.21 gi|240103367|ref|YP_002959676.1| - 0.0054 16.6 0.0 0.0068 16.3 0.0 1.2 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|240103367|ref|YP_002959676.1| - 0.084 13.0 0.1 0.15 12.2 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3378) Aminotran_5 PF00266.19 gi|240103368|ref|YP_002959677.1| - 1.5e-138 461.8 0.0 1.7e-138 461.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|240103368|ref|YP_002959677.1| - 1.1e-06 28.1 0.0 2.3e-06 27.1 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|240103368|ref|YP_002959677.1| - 3e-05 23.5 0.0 4.6e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|240103368|ref|YP_002959677.1| - 7.3e-05 22.2 0.0 9e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|240103368|ref|YP_002959677.1| - 0.0043 15.6 0.0 0.0063 15.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme NAD_kinase PF01513.21 gi|240103370|ref|YP_002959679.1| - 3.3e-45 154.5 0.0 3.8e-45 154.3 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|240103370|ref|YP_002959679.1| - 5.2e-06 26.1 1.7 1.4e-05 24.7 0.0 2.5 3 1 1 4 4 4 1 Diacylglycerol kinase catalytic domain Ion_trans_2 PF07885.16 gi|240103371|ref|YP_002959680.1| - 4.6e-13 48.9 7.1 1.2e-12 47.6 7.4 1.6 1 1 0 1 1 1 1 Ion channel TPR_7 PF13176.6 gi|240103371|ref|YP_002959680.1| - 0.033 14.2 0.1 0.071 13.2 0.1 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat Acetyltransf_3 PF13302.7 gi|240103372|ref|YP_002959681.1| - 8.7e-30 104.2 0.2 1.1e-29 103.9 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|240103372|ref|YP_002959681.1| - 1.6e-14 54.1 0.5 2.2e-14 53.7 0.5 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|240103372|ref|YP_002959681.1| - 2.4e-11 44.0 0.0 2.9e-11 43.7 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|240103372|ref|YP_002959681.1| - 1.1e-06 28.4 0.1 1.6e-06 27.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|240103372|ref|YP_002959681.1| - 0.0019 18.1 0.0 0.0024 17.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|240103372|ref|YP_002959681.1| - 0.089 12.8 0.1 0.29 11.1 0.0 1.9 2 1 0 2 2 2 0 FR47-like protein HTH_3 PF01381.22 gi|240103373|ref|YP_002959682.1| - 1.4e-11 44.3 0.6 6.6e-11 42.1 0.2 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|240103373|ref|YP_002959682.1| - 7.2e-08 32.3 0.1 4.4e-07 29.8 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|240103373|ref|YP_002959682.1| - 1.3e-07 31.8 1.7 5.1e-07 29.9 0.0 2.6 4 0 0 4 4 4 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|240103373|ref|YP_002959682.1| - 0.00092 19.4 0.6 1.1 9.5 0.0 3.1 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_23 PF13384.6 gi|240103373|ref|YP_002959682.1| - 0.022 14.5 0.2 0.18 11.6 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain UPF0102 PF02021.17 gi|240103373|ref|YP_002959682.1| - 0.062 13.5 0.1 0.26 11.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0102 MerR PF00376.23 gi|240103373|ref|YP_002959682.1| - 0.075 12.8 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 MerR family regulatory protein Gamma_PGA_hydro PF05908.11 gi|240103373|ref|YP_002959682.1| - 0.094 12.1 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Poly-gamma-glutamate hydrolase HTH_11 PF08279.12 gi|240103373|ref|YP_002959682.1| - 0.094 12.7 0.0 0.094 12.7 0.0 2.3 3 0 0 3 3 3 0 HTH domain HTH_26 PF13443.6 gi|240103373|ref|YP_002959682.1| - 0.12 12.8 0.1 0.32 11.4 0.0 1.7 2 0 0 2 2 1 0 Cro/C1-type HTH DNA-binding domain HTH_7 PF02796.15 gi|240103373|ref|YP_002959682.1| - 0.83 9.8 3.7 3.4 7.8 0.0 3.0 4 0 0 4 4 3 0 Helix-turn-helix domain of resolvase HD PF01966.22 gi|240103374|ref|YP_002959683.1| - 2.4e-15 56.8 1.7 2.8e-14 53.4 1.7 2.6 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 gi|240103374|ref|YP_002959683.1| - 0.0048 16.4 0.0 0.0094 15.4 0.0 1.5 1 0 0 1 1 1 1 HDOD domain PGK PF00162.19 gi|240103375|ref|YP_002959684.1| - 5.8e-109 364.5 0.0 6.5e-109 364.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase SIR2 PF02146.17 gi|240103376|ref|YP_002959685.1| - 1.1e-58 198.1 0.0 1.3e-58 197.9 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.10 gi|240103376|ref|YP_002959685.1| - 0.038 14.1 1.6 0.092 12.9 1.6 1.6 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|240103376|ref|YP_002959685.1| - 0.05 13.6 0.1 0.12 12.4 0.0 1.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|240103376|ref|YP_002959685.1| - 0.071 13.3 1.5 1 9.6 0.1 2.9 3 0 0 3 3 3 0 C4-type zinc ribbon domain A1_Propeptide PF07966.12 gi|240103376|ref|YP_002959685.1| - 0.078 12.9 0.4 0.2 11.5 0.3 1.7 2 0 0 2 2 2 0 A1 Propeptide zf-ribbon_3 PF13248.6 gi|240103376|ref|YP_002959685.1| - 0.12 11.8 0.2 0.12 11.8 0.2 1.7 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|240103376|ref|YP_002959685.1| - 0.17 11.6 0.8 12 5.7 0.2 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Mu-like_Com PF10122.9 gi|240103376|ref|YP_002959685.1| - 9 5.8 6.2 15 5.1 3.0 2.7 2 1 0 2 2 2 0 Mu-like prophage protein Com Orn_Arg_deC_N PF02784.16 gi|240103377|ref|YP_002959686.1| - 4.7e-40 137.5 0.0 6e-40 137.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|240103377|ref|YP_002959686.1| - 2.1e-23 82.4 0.0 2.1e-23 82.4 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AP_endonuc_2 PF01261.24 gi|240103377|ref|YP_002959686.1| - 0.0052 16.3 0.0 0.014 14.8 0.0 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF1356 PF07092.12 gi|240103377|ref|YP_002959686.1| - 0.21 10.8 0.2 0.31 10.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) Trp_Tyr_perm PF03222.13 gi|240103378|ref|YP_002959687.1| - 3.6e-27 95.4 34.1 1e-26 93.9 34.1 1.6 1 1 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 gi|240103378|ref|YP_002959687.1| - 5.3e-19 68.2 31.0 8.7e-18 64.2 31.0 2.1 1 1 0 1 1 1 1 Transmembrane amino acid transporter protein Spore_permease PF03845.13 gi|240103378|ref|YP_002959687.1| - 0.00023 20.1 18.2 0.0004 19.3 18.2 1.4 1 0 0 1 1 1 1 Spore germination protein Nramp PF01566.18 gi|240103378|ref|YP_002959687.1| - 0.24 10.3 27.2 0.085 11.8 17.9 2.2 2 0 0 2 2 2 0 Natural resistance-associated macrophage protein SHMT PF00464.19 gi|240103379|ref|YP_002959688.1| - 5.7e-81 272.1 0.0 7.1e-81 271.8 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|240103379|ref|YP_002959688.1| - 9.6e-13 48.0 0.0 1.4e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|240103379|ref|YP_002959688.1| - 2.5e-10 40.1 0.0 6.1e-10 38.8 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|240103379|ref|YP_002959688.1| - 7.4e-10 38.3 0.0 1.1e-09 37.8 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V SelA PF03841.13 gi|240103379|ref|YP_002959688.1| - 0.00021 20.4 0.0 0.00034 19.7 0.0 1.2 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|240103379|ref|YP_002959688.1| - 0.0034 16.0 0.0 0.0084 14.7 0.0 1.6 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|240103379|ref|YP_002959688.1| - 0.0061 15.9 0.0 0.011 15.1 0.0 1.3 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family CheD PF03975.13 gi|240103379|ref|YP_002959688.1| - 0.028 14.5 0.0 0.058 13.5 0.0 1.4 1 0 0 1 1 1 0 CheD chemotactic sensory transduction DUF257 PF03192.13 gi|240103380|ref|YP_002959689.1| - 2.2e-34 119.1 0.1 2.5e-34 118.9 0.1 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 UPF0020 PF01170.18 gi|240103381|ref|YP_002959690.1| - 6.6e-28 97.7 0.0 7.7e-27 94.3 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|240103381|ref|YP_002959690.1| - 1.4e-11 44.7 0.0 3.2e-11 43.5 0.0 1.6 2 0 0 2 2 2 1 THUMP domain Methyltransf_31 PF13847.6 gi|240103381|ref|YP_002959690.1| - 4.9e-11 42.7 0.0 8.4e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|240103381|ref|YP_002959690.1| - 1.1e-09 38.8 0.0 2.7e-09 37.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240103381|ref|YP_002959690.1| - 5.3e-08 33.4 0.0 1.5e-07 32.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|240103381|ref|YP_002959690.1| - 1.9e-05 24.1 0.0 3.8e-05 23.2 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|240103381|ref|YP_002959690.1| - 3.5e-05 23.4 0.0 5.4e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|240103381|ref|YP_002959690.1| - 0.0001 21.7 0.0 0.00016 21.1 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase N6_N4_Mtase PF01555.18 gi|240103381|ref|YP_002959690.1| - 0.00024 20.9 0.0 0.22 11.2 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_12 PF08242.12 gi|240103381|ref|YP_002959690.1| - 0.00032 21.4 0.0 0.0011 19.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|240103381|ref|YP_002959690.1| - 0.00035 20.1 0.0 0.32 10.4 0.0 2.2 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Cons_hypoth95 PF03602.15 gi|240103381|ref|YP_002959690.1| - 0.00044 19.9 0.0 0.00069 19.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|240103381|ref|YP_002959690.1| - 0.0075 16.1 0.0 0.052 13.4 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|240103381|ref|YP_002959690.1| - 0.24 10.7 0.0 0.38 10.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Radical_SAM PF04055.21 gi|240103382|ref|YP_002959691.1| - 4.6e-16 59.6 0.0 5.8e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|240103382|ref|YP_002959691.1| - 5.5e-08 33.2 0.0 8.4e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|240103382|ref|YP_002959691.1| - 4.5e-07 30.0 0.0 8.2e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2284 PF10050.9 gi|240103385|ref|YP_002959694.1| - 3.1e-33 114.8 0.0 4e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) DUF1887 PF09002.11 gi|240103386|ref|YP_002959695.1| - 0.00025 19.9 0.0 0.00028 19.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) Cas_Cas02710 PF09670.10 gi|240103386|ref|YP_002959695.1| - 0.023 13.5 0.0 0.027 13.3 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) IRF-2BP1_2 PF11261.8 gi|240103386|ref|YP_002959695.1| - 0.032 13.8 0.0 0.074 12.6 0.0 1.6 1 0 0 1 1 1 0 Interferon regulatory factor 2-binding protein zinc finger DUF4088 PF13317.6 gi|240103386|ref|YP_002959695.1| - 0.066 12.8 0.0 0.081 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) PIN_4 PF13638.6 gi|240103387|ref|YP_002959696.1| - 0.0052 17.1 0.0 0.0073 16.6 0.0 1.2 1 0 0 1 1 1 1 PIN domain Aminotran_1_2 PF00155.21 gi|240103388|ref|YP_002959697.1| - 2.6e-80 270.3 0.0 3e-80 270.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|240103388|ref|YP_002959697.1| - 2.1e-07 30.6 0.0 3.5e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|240103388|ref|YP_002959697.1| - 2.6e-07 29.9 0.0 7.5e-06 25.1 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|240103388|ref|YP_002959697.1| - 0.00082 18.0 0.0 0.0013 17.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|240103388|ref|YP_002959697.1| - 0.0076 15.6 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Radical_SAM PF04055.21 gi|240103388|ref|YP_002959697.1| - 0.035 14.5 0.2 1.1 9.6 0.0 2.7 3 0 0 3 3 3 0 Radical SAM superfamily Rsbr_N PF08678.10 gi|240103388|ref|YP_002959697.1| - 0.093 12.8 0.0 1.6 8.8 0.0 2.3 2 0 0 2 2 2 0 Rsbr N terminal DUF1611_N PF17396.2 gi|240103388|ref|YP_002959697.1| - 0.11 12.8 0.0 0.37 11.0 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain 4HBT PF03061.22 gi|240103389|ref|YP_002959698.1| - 8.5e-07 29.2 0.1 1.5e-06 28.4 0.1 1.5 1 1 0 1 1 1 1 Thioesterase superfamily MaoC_dehydratas PF01575.19 gi|240103389|ref|YP_002959698.1| - 2.1e-05 24.1 0.0 3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain 4HBT_3 PF13622.6 gi|240103389|ref|YP_002959698.1| - 0.00019 21.8 0.0 0.00024 21.4 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.6 gi|240103389|ref|YP_002959698.1| - 0.058 13.5 0.0 0.092 12.9 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4442) Radical_SAM PF04055.21 gi|240103390|ref|YP_002959699.1| - 8e-26 91.4 0.1 6.1e-25 88.5 0.0 2.5 4 0 0 4 4 4 1 Radical SAM superfamily HHH_3 PF12836.7 gi|240103390|ref|YP_002959699.1| - 2.8e-08 33.9 0.0 3.1e-07 30.6 0.0 2.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|240103390|ref|YP_002959699.1| - 0.0011 19.6 0.0 0.0043 17.6 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|240103390|ref|YP_002959699.1| - 0.0012 18.6 0.0 0.004 17.0 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF655 PF04919.12 gi|240103390|ref|YP_002959699.1| - 0.052 13.5 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF655) HHH_8 PF14716.6 gi|240103390|ref|YP_002959699.1| - 0.1 13.0 0.1 1 9.7 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain T2SSK PF03934.13 gi|240103390|ref|YP_002959699.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K HHH_6 PF14579.6 gi|240103390|ref|YP_002959699.1| - 0.13 12.5 0.0 0.34 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif Na_Ca_ex PF01699.24 gi|240103391|ref|YP_002959700.1| - 7.4e-52 175.3 32.0 3.7e-29 101.6 9.4 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein FluMu_N PF17891.1 gi|240103391|ref|YP_002959700.1| - 0.095 12.5 0.0 8.7 6.2 0.0 2.3 2 0 0 2 2 2 0 Mu-like prophage FluMu N-terminal domain NYN PF01936.18 gi|240103392|ref|YP_002959701.1| - 4.1e-20 72.8 0.1 5.1e-20 72.4 0.1 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.13 gi|240103392|ref|YP_002959701.1| - 0.0076 16.0 1.0 0.49 10.1 0.0 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF460) NYN PF01936.18 gi|240103393|ref|YP_002959702.1| - 6.9e-18 65.5 0.0 8.6e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF374 PF04028.13 gi|240103393|ref|YP_002959702.1| - 0.009 15.6 0.0 0.23 11.0 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF374) HAD PF12710.7 gi|240103393|ref|YP_002959702.1| - 0.1 13.0 0.0 0.12 12.7 0.0 1.1 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF4432 PF14486.6 gi|240103393|ref|YP_002959702.1| - 0.11 11.3 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4432) Helicase_RecD PF05127.14 gi|240103394|ref|YP_002959703.1| - 2.7e-54 183.7 0.0 4.5e-54 183.0 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|240103394|ref|YP_002959703.1| - 1.6e-46 158.6 0.0 3e-32 111.9 0.0 2.4 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|240103394|ref|YP_002959703.1| - 2.1e-33 114.1 0.0 1.1e-32 111.9 0.0 2.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|240103394|ref|YP_002959703.1| - 5.8e-05 22.9 0.0 0.00035 20.3 0.0 2.2 1 1 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_1 PF00583.25 gi|240103394|ref|YP_002959703.1| - 0.00065 19.9 0.1 0.002 18.3 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family AAA_22 PF13401.6 gi|240103394|ref|YP_002959703.1| - 0.033 14.5 0.0 2.1 8.6 0.0 2.9 2 1 1 3 3 3 0 AAA domain Acetyltransf_7 PF13508.7 gi|240103394|ref|YP_002959703.1| - 0.038 14.4 0.0 0.16 12.4 0.0 2.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|240103394|ref|YP_002959703.1| - 0.071 13.1 0.0 0.25 11.3 0.0 1.9 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Cupin_2 PF07883.11 gi|240103395|ref|YP_002959704.1| - 5e-15 55.0 0.0 6.3e-15 54.6 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|240103395|ref|YP_002959704.1| - 1.6e-10 41.0 0.1 1.9e-10 40.8 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|240103395|ref|YP_002959704.1| - 9.8e-06 25.5 0.0 1.1e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|240103395|ref|YP_002959704.1| - 0.00019 21.1 0.0 0.00041 20.0 0.0 1.5 1 1 0 1 1 1 1 Cupin CENP-C_C PF11699.8 gi|240103395|ref|YP_002959704.1| - 0.001 19.2 0.0 0.0013 18.9 0.0 1.1 1 0 0 1 1 1 1 Mif2/CENP-C like AraC_binding_2 PF14525.6 gi|240103395|ref|YP_002959704.1| - 0.001 18.8 0.0 0.0011 18.7 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Asp_Arg_Hydrox PF05118.15 gi|240103395|ref|YP_002959704.1| - 0.008 16.0 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase AraC_N PF06719.13 gi|240103395|ref|YP_002959704.1| - 0.18 11.5 0.0 0.22 11.2 0.0 1.1 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus Fez1 PF06818.15 gi|240103397|ref|YP_002959706.1| - 0.0023 18.4 2.9 0.0025 18.3 2.9 1.0 1 0 0 1 1 1 1 Fez1 YabA PF06156.13 gi|240103397|ref|YP_002959706.1| - 0.0069 17.0 2.4 0.007 17.0 2.4 1.1 1 0 0 1 1 1 1 Initiation control protein YabA DUF3375 PF11855.8 gi|240103397|ref|YP_002959706.1| - 0.0073 15.3 0.3 0.0081 15.1 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3375) AAA_9 PF12781.7 gi|240103397|ref|YP_002959706.1| - 0.0074 15.4 3.3 0.0095 15.1 3.3 1.1 1 0 0 1 1 1 1 ATP-binding dynein motor region CENP-H PF05837.12 gi|240103397|ref|YP_002959706.1| - 0.024 15.0 3.8 0.051 14.0 3.8 1.5 1 1 0 1 1 1 0 Centromere protein H (CENP-H) FapA PF03961.13 gi|240103397|ref|YP_002959706.1| - 0.36 9.4 3.5 0.39 9.3 3.5 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A Asp_Glu_race PF01177.22 gi|240103398|ref|YP_002959707.1| - 6.9e-62 209.2 0.0 7.8e-62 209.0 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Lactamase_B PF00753.27 gi|240103399|ref|YP_002959708.1| - 3.3e-16 59.9 0.5 9.9e-16 58.3 0.5 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|240103399|ref|YP_002959708.1| - 1.2e-10 41.3 0.0 1.8e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|240103399|ref|YP_002959708.1| - 0.0015 18.4 0.0 0.0028 17.5 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|240103399|ref|YP_002959708.1| - 0.0079 15.6 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain DUF5122 PF17164.4 gi|240103400|ref|YP_002959709.1| - 0.013 15.8 12.7 0.24 11.7 0.2 5.3 5 0 0 5 5 5 0 Domain of unknown function (DUF5122) beta-propeller FSA_C PF10479.9 gi|240103400|ref|YP_002959709.1| - 1 7.4 11.1 1.4 7.0 11.1 1.1 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus TMEM154 PF15102.6 gi|240103400|ref|YP_002959709.1| - 3.2 7.7 8.0 5.2 7.0 8.0 1.3 1 0 0 1 1 1 0 TMEM154 protein family PQQ_3 PF13570.6 gi|240103400|ref|YP_002959709.1| - 4 8.0 14.7 0.33 11.5 0.8 4.9 5 1 0 5 5 5 0 PQQ-like domain Mucin PF01456.17 gi|240103400|ref|YP_002959709.1| - 4.6 7.2 37.5 8.4 6.4 37.5 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF555 PF04475.12 gi|240103401|ref|YP_002959710.1| - 9.1e-41 138.3 1.1 1.1e-40 138.0 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) FdhE PF04216.12 gi|240103401|ref|YP_002959710.1| - 0.15 11.9 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DUF357 PF04010.13 gi|240103402|ref|YP_002959711.1| - 9.4e-31 105.7 1.3 1.1e-30 105.5 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) PHD_like PF12910.7 gi|240103402|ref|YP_002959711.1| - 0.037 14.0 0.5 0.045 13.8 0.5 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system PaREP1 PF05942.11 gi|240103402|ref|YP_002959711.1| - 0.058 13.3 0.3 2 8.4 0.0 2.1 1 1 1 2 2 2 0 Archaeal PaREP1/PaREP8 family HAD_2 PF13419.6 gi|240103403|ref|YP_002959712.1| - 1.7e-33 116.2 0.0 2.3e-33 115.8 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240103403|ref|YP_002959712.1| - 1.5e-19 71.2 0.0 1.5e-17 64.6 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|240103403|ref|YP_002959712.1| - 1.2e-15 57.3 0.0 2.4e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|240103403|ref|YP_002959712.1| - 2.7e-05 24.7 0.0 3.7e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|240103403|ref|YP_002959712.1| - 0.00076 19.1 0.1 0.0038 16.9 0.0 2.0 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase PNK3P PF08645.11 gi|240103403|ref|YP_002959712.1| - 0.035 13.8 0.1 0.15 11.8 0.0 2.0 2 1 0 2 2 2 0 Polynucleotide kinase 3 phosphatase ASCH PF04266.14 gi|240103404|ref|YP_002959713.1| - 2.7e-20 72.9 0.1 3.7e-20 72.5 0.1 1.2 1 0 0 1 1 1 1 ASCH domain PAP2 PF01569.21 gi|240103405|ref|YP_002959714.1| - 1.6e-14 53.8 4.4 1.6e-14 53.8 4.4 1.8 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|240103405|ref|YP_002959714.1| - 6.6e-05 22.7 9.2 0.0025 17.5 9.2 2.1 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|240103405|ref|YP_002959714.1| - 0.0007 20.1 2.2 0.0012 19.3 0.5 2.0 2 0 0 2 2 2 1 PAP2 superfamily C-terminal DUF2070 PF09843.9 gi|240103405|ref|YP_002959714.1| - 0.037 12.3 4.9 0.045 12.0 4.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Sm_multidrug_ex PF06695.11 gi|240103406|ref|YP_002959715.1| - 1.5e-30 106.3 2.0 1.8e-30 106.1 2.0 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein DUF234 PF03008.14 gi|240103407|ref|YP_002959716.1| - 2.9e-27 95.0 0.1 5.3e-27 94.2 0.1 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|240103407|ref|YP_002959716.1| - 2.9e-14 53.6 0.0 4.9e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea HTH_IclR PF09339.10 gi|240103407|ref|YP_002959716.1| - 6.1e-07 29.1 0.0 2e-06 27.5 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|240103407|ref|YP_002959716.1| - 1.5e-05 24.8 0.0 5.1e-05 23.0 0.0 2.0 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|240103407|ref|YP_002959716.1| - 0.00028 20.7 0.1 0.0063 16.4 0.1 2.9 2 1 1 3 3 3 1 MarR family HTH_45 PF14947.6 gi|240103407|ref|YP_002959716.1| - 0.0026 17.7 0.0 0.0089 16.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix UPF0102 PF02021.17 gi|240103407|ref|YP_002959716.1| - 0.0041 17.3 0.0 0.011 15.9 0.0 1.7 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HTH_9 PF08221.11 gi|240103407|ref|YP_002959716.1| - 0.014 15.4 0.4 0.044 13.9 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|240103407|ref|YP_002959716.1| - 0.031 14.1 0.1 0.1 12.5 0.1 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|240103407|ref|YP_002959716.1| - 0.064 13.1 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 HxlR-like helix-turn-helix PmbA_TldD PF01523.16 gi|240103408|ref|YP_002959717.1| - 1.2e-50 172.9 0.4 1.5e-50 172.6 0.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|240103409|ref|YP_002959718.1| - 1.4e-57 195.7 0.1 2.3e-57 195.0 0.1 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Isy1 PF06246.12 gi|240103410|ref|YP_002959719.1| - 0.016 14.8 1.0 0.016 14.8 1.0 1.0 1 0 0 1 1 1 0 Isy1-like splicing family DUF1497 PF07384.11 gi|240103410|ref|YP_002959719.1| - 0.081 13.4 1.6 3.6 8.1 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1497) ParE_toxin PF05016.15 gi|240103411|ref|YP_002959720.1| - 4.6e-07 30.4 0.5 5.3e-07 30.2 0.5 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|240103411|ref|YP_002959720.1| - 5.5e-05 23.0 1.7 8.7e-05 22.4 1.7 1.3 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system Gp49 PF05973.14 gi|240103411|ref|YP_002959720.1| - 0.0096 16.0 1.0 0.011 15.8 1.0 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) KMP11 PF03037.16 gi|240103411|ref|YP_002959720.1| - 0.037 14.8 2.8 0.04 14.7 1.1 1.8 1 1 1 2 2 2 0 Kinetoplastid membrane protein 11 Phage_pRha PF09669.10 gi|240103411|ref|YP_002959720.1| - 0.069 13.7 0.4 0.085 13.4 0.4 1.1 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) MazG PF03819.17 gi|240103412|ref|YP_002959721.1| - 6.1e-15 55.2 0.2 1.6e-14 53.8 0.0 1.7 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|240103412|ref|YP_002959721.1| - 8.8e-06 25.9 0.1 1.3e-05 25.4 0.1 1.2 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|240103412|ref|YP_002959721.1| - 0.00012 22.5 0.9 0.00015 22.2 0.9 1.3 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Asp_Glu_race PF01177.22 gi|240103413|ref|YP_002959722.1| - 2.9e-51 174.5 0.0 3.2e-51 174.3 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase LpxI_N PF17930.1 gi|240103413|ref|YP_002959722.1| - 0.0059 16.5 0.1 0.011 15.6 0.1 1.5 1 0 0 1 1 1 1 LpxI N-terminal domain Pantoate_transf PF02548.15 gi|240103413|ref|YP_002959722.1| - 0.093 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase Cob_adeno_trans PF01923.18 gi|240103414|ref|YP_002959723.1| - 4.1e-47 160.4 0.0 4.6e-47 160.2 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase MFS_1 PF07690.16 gi|240103415|ref|YP_002959724.1| - 2.5e-31 108.9 58.1 1.7e-29 102.9 33.5 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|240103415|ref|YP_002959724.1| - 2.7e-21 75.6 18.3 3.6e-21 75.1 18.3 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 gi|240103415|ref|YP_002959724.1| - 4.5e-10 38.7 31.5 2.2e-09 36.4 7.6 2.9 2 1 1 3 3 3 3 MFS/sugar transport protein DUF4097 PF13349.6 gi|240103416|ref|YP_002959725.1| - 7.6e-13 48.4 0.1 4.3e-08 32.8 0.2 2.2 1 1 1 2 2 2 2 Putative adhesin Bactofilin PF04519.13 gi|240103416|ref|YP_002959725.1| - 0.043 14.1 6.5 1.2 9.4 0.2 2.9 2 1 1 3 3 3 0 Polymer-forming cytoskeletal TamB PF04357.13 gi|240103416|ref|YP_002959725.1| - 0.044 13.0 0.0 0.58 9.3 0.0 2.2 1 1 1 2 2 2 0 TamB, inner membrane protein subunit of TAM complex DUF3686 PF12458.8 gi|240103416|ref|YP_002959725.1| - 0.1 11.1 0.3 0.21 10.1 0.3 1.5 1 1 0 1 1 1 0 ATPase involved in DNA repair HMA PF00403.26 gi|240103416|ref|YP_002959725.1| - 0.74 10.3 5.0 3.2 8.3 0.1 2.9 3 0 0 3 3 3 0 Heavy-metal-associated domain HTH_5 PF01022.20 gi|240103418|ref|YP_002959727.1| - 6.5e-14 51.5 0.1 1.6e-13 50.3 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|240103418|ref|YP_002959727.1| - 5.7e-13 48.7 0.1 4.3e-12 45.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|240103418|ref|YP_002959727.1| - 2.8e-05 23.9 0.0 7.9e-05 22.5 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|240103418|ref|YP_002959727.1| - 0.00014 21.7 0.0 0.00027 20.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|240103418|ref|YP_002959727.1| - 0.00046 19.9 0.5 0.00094 18.9 0.0 1.9 2 1 0 2 2 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|240103418|ref|YP_002959727.1| - 0.00074 19.4 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|240103418|ref|YP_002959727.1| - 0.0035 17.4 0.1 0.05 13.7 0.0 2.2 2 0 0 2 2 2 1 DprA winged helix domain HTH_11 PF08279.12 gi|240103418|ref|YP_002959727.1| - 0.0044 16.9 0.0 0.029 14.3 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|240103418|ref|YP_002959727.1| - 0.0055 16.2 0.3 0.023 14.3 0.0 2.2 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|240103418|ref|YP_002959727.1| - 0.0095 16.1 0.2 0.025 14.8 0.1 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 gi|240103418|ref|YP_002959727.1| - 0.0095 15.7 0.0 0.026 14.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|240103418|ref|YP_002959727.1| - 0.019 14.7 0.1 0.019 14.7 0.1 2.5 2 1 1 3 3 3 0 LexA DNA binding domain RuvB_C PF05491.13 gi|240103418|ref|YP_002959727.1| - 0.029 14.2 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain MazE_antitoxin PF04014.18 gi|240103418|ref|YP_002959727.1| - 0.032 14.2 0.9 4.3 7.4 0.1 2.5 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin DUF4423 PF14394.6 gi|240103418|ref|YP_002959727.1| - 0.036 13.8 0.5 0.46 10.2 0.1 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4423) HTH_34 PF13601.6 gi|240103418|ref|YP_002959727.1| - 0.046 13.9 0.0 0.13 12.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HxlR PF01638.17 gi|240103418|ref|YP_002959727.1| - 0.052 13.4 0.2 0.14 12.0 0.0 1.9 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_40 PF14493.6 gi|240103418|ref|YP_002959727.1| - 0.084 13.3 0.1 0.41 11.1 0.0 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain FaeA PF04703.12 gi|240103418|ref|YP_002959727.1| - 0.099 13.0 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein ArsR PF09824.9 gi|240103418|ref|YP_002959727.1| - 0.11 12.1 0.2 0.24 11.0 0.0 1.6 2 0 0 2 2 2 0 ArsR transcriptional regulator DUF2089 PF09862.9 gi|240103418|ref|YP_002959727.1| - 0.33 11.0 1.6 3.1 7.9 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) Ribosomal_L29 PF00831.23 gi|240103418|ref|YP_002959727.1| - 3.7 7.6 8.7 22 5.1 0.2 2.6 2 0 0 2 2 2 0 Ribosomal L29 protein Mem_trans PF03547.18 gi|240103419|ref|YP_002959728.1| - 5.5e-10 38.2 17.6 1.8e-05 23.4 5.8 2.1 1 1 1 2 2 2 2 Membrane transport protein Arena_ncap_C PF17290.2 gi|240103421|ref|YP_002959730.1| - 0.058 12.7 0.1 0.083 12.2 0.1 1.2 1 0 0 1 1 1 0 Arenavirus nucleocapsid C-terminal domain Mucin_bdg PF03272.13 gi|240103421|ref|YP_002959730.1| - 0.11 12.6 0.1 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Putative mucin or carbohydrate-binding module DUF5356 PF17309.2 gi|240103423|ref|YP_002959732.1| - 0.45 10.5 4.5 0.76 9.8 4.5 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5356) Peptidase_M42 PF05343.14 gi|240103424|ref|YP_002959733.1| - 8.1e-71 238.4 0.0 9.5e-71 238.2 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|240103424|ref|YP_002959733.1| - 0.00022 21.0 0.1 0.00041 20.1 0.1 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|240103424|ref|YP_002959733.1| - 0.042 13.5 0.1 0.62 9.7 0.0 2.1 2 0 0 2 2 2 0 Peptidase family M28 PTPS PF01242.19 gi|240103425|ref|YP_002959734.1| - 1.6e-26 92.7 0.0 1.9e-26 92.4 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase SpoV PF08183.11 gi|240103425|ref|YP_002959734.1| - 0.37 10.8 2.0 0.66 10.0 2.0 1.4 1 0 0 1 1 1 0 Stage V sporulation protein family ABC_tran PF00005.27 gi|240103426|ref|YP_002959735.1| - 3e-24 86.1 0.0 5.6e-24 85.2 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103426|ref|YP_002959735.1| - 1.2e-11 45.0 1.0 9.8e-07 28.9 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|240103426|ref|YP_002959735.1| - 3.8e-05 24.3 0.0 3.8e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|240103426|ref|YP_002959735.1| - 0.00014 21.5 0.1 0.00024 20.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|240103426|ref|YP_002959735.1| - 0.00043 20.1 0.0 0.0005 19.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|240103426|ref|YP_002959735.1| - 0.0015 18.6 0.0 0.002 18.2 0.0 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase SMC_N PF02463.19 gi|240103426|ref|YP_002959735.1| - 0.007 15.8 0.2 0.019 14.4 0.1 1.7 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|240103426|ref|YP_002959735.1| - 0.011 14.4 0.1 0.025 13.2 0.0 1.5 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|240103426|ref|YP_002959735.1| - 0.019 14.9 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|240103426|ref|YP_002959735.1| - 0.019 15.5 0.0 0.031 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|240103426|ref|YP_002959735.1| - 0.03 14.6 0.0 0.047 14.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|240103426|ref|YP_002959735.1| - 0.034 14.2 0.0 0.097 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|240103426|ref|YP_002959735.1| - 0.091 13.1 0.1 0.15 12.4 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|240103426|ref|YP_002959735.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|240103426|ref|YP_002959735.1| - 0.15 11.9 0.2 0.29 11.0 0.1 1.5 2 0 0 2 2 2 0 RsgA GTPase Cas9_b_hairpin PF17893.1 gi|240103426|ref|YP_002959735.1| - 0.19 11.6 0.0 0.36 10.6 0.0 1.5 1 0 0 1 1 1 0 CRISPR-associated endonuclease Cas9 beta-hairpin domain ABC2_membrane_3 PF12698.7 gi|240103427|ref|YP_002959736.1| - 2.6e-14 53.1 22.4 4.1e-14 52.4 22.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|240103427|ref|YP_002959736.1| - 5.3e-14 52.1 17.1 5.3e-14 52.1 17.1 2.5 3 0 0 3 3 3 1 ABC-2 type transporter DUF192 PF02643.15 gi|240103429|ref|YP_002959738.1| - 3.5e-18 65.6 0.0 5.3e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Prefoldin PF02996.17 gi|240103430|ref|YP_002959739.1| - 5.2e-22 78.0 1.2 9.5e-22 77.2 0.1 1.7 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|240103430|ref|YP_002959739.1| - 0.0018 18.2 4.0 0.062 13.3 0.5 2.3 2 0 0 2 2 2 2 Prefoldin subunit NPV_P10 PF05531.12 gi|240103430|ref|YP_002959739.1| - 0.047 14.1 1.1 3.9 8.0 0.0 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein YebO PF13974.6 gi|240103430|ref|YP_002959739.1| - 0.049 13.7 3.4 0.11 12.6 3.4 1.6 1 0 0 1 1 1 0 YebO-like protein BLOC1_2 PF10046.9 gi|240103430|ref|YP_002959739.1| - 0.11 12.8 5.2 0.2 12.0 0.3 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.10 gi|240103430|ref|YP_002959739.1| - 0.19 11.9 2.8 4.5 7.5 0.5 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family MerR-DNA-bind PF09278.11 gi|240103430|ref|YP_002959739.1| - 1.6 9.3 9.2 11 6.7 0.2 3.6 2 2 2 4 4 4 0 MerR, DNA binding Prefoldin_2 PF01920.20 gi|240103431|ref|YP_002959740.1| - 9.5e-08 32.0 8.7 1.1e-07 31.8 8.7 1.0 1 0 0 1 1 1 1 Prefoldin subunit Phage_TAC_12 PF12363.8 gi|240103431|ref|YP_002959740.1| - 0.0049 17.3 0.7 0.011 16.2 0.7 1.7 1 1 0 1 1 1 1 Phage tail assembly chaperone protein, TAC DUF440 PF04269.12 gi|240103431|ref|YP_002959740.1| - 0.062 13.6 0.1 0.098 13.0 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function, DUF440 NAD_binding_3 PF03447.16 gi|240103431|ref|YP_002959740.1| - 0.11 13.2 0.1 0.13 12.9 0.1 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Integrase_DNA PF02920.15 gi|240103431|ref|YP_002959740.1| - 1.2 8.9 5.8 0.36 10.6 1.1 2.1 2 0 0 2 2 2 0 DNA binding domain of tn916 integrase Spore_III_AB PF09548.10 gi|240103431|ref|YP_002959740.1| - 2 8.5 10.8 2.3 8.3 1.8 2.0 1 1 1 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) POR PF01558.18 gi|240103432|ref|YP_002959741.1| - 1.9e-37 129.1 0.1 2.2e-37 128.8 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|240103433|ref|YP_002959742.1| - 8e-36 123.1 0.2 1.1e-35 122.6 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 gi|240103433|ref|YP_002959742.1| - 0.14 11.0 0.1 0.21 10.4 0.1 1.2 1 0 0 1 1 1 0 XFP N-terminal domain POR_N PF01855.19 gi|240103434|ref|YP_002959743.1| - 4.2e-81 272.1 0.6 5.3e-81 271.8 0.6 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|240103434|ref|YP_002959743.1| - 5.9e-20 71.5 0.1 1.1e-19 70.6 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|240103434|ref|YP_002959743.1| - 4.6e-10 39.4 0.0 9.6e-10 38.4 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|240103434|ref|YP_002959743.1| - 0.00025 20.7 0.5 0.00037 20.2 0.5 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF2283 PF10049.9 gi|240103435|ref|YP_002959744.1| - 2.9e-14 53.0 3.3 3.7e-14 52.7 3.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) BAAT_C PF08840.11 gi|240103435|ref|YP_002959744.1| - 0.056 13.4 0.0 0.065 13.1 0.0 1.0 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal UPA_2 PF17809.1 gi|240103435|ref|YP_002959744.1| - 0.14 12.0 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 UPA domain POR PF01558.18 gi|240103436|ref|YP_002959745.1| - 7.1e-38 130.4 0.6 1.2e-37 129.7 0.6 1.3 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF348 PF03990.14 gi|240103436|ref|YP_002959745.1| - 0.05 13.3 0.7 0.13 12.0 0.5 1.9 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain Methyltransf_9 PF08003.11 gi|240103436|ref|YP_002959745.1| - 0.063 12.2 0.0 0.083 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TPP_enzyme_C PF02775.21 gi|240103437|ref|YP_002959746.1| - 1.1e-38 132.4 0.2 1.7e-38 131.8 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Cas_DxTHG PF09455.10 gi|240103437|ref|YP_002959746.1| - 0.036 13.7 0.0 0.049 13.2 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family POR_N PF01855.19 gi|240103438|ref|YP_002959747.1| - 5.5e-75 252.1 0.0 7e-75 251.7 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|240103438|ref|YP_002959747.1| - 1.3e-18 67.1 0.2 2.1e-18 66.5 0.2 1.3 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|240103438|ref|YP_002959747.1| - 4.7e-05 23.3 0.0 0.0001 22.2 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|240103438|ref|YP_002959747.1| - 0.0035 17.0 0.0 0.0064 16.1 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|240103439|ref|YP_002959748.1| - 1.3e-11 43.8 12.7 3e-06 26.8 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|240103439|ref|YP_002959748.1| - 2.6e-11 43.9 7.4 3.7e-11 43.5 7.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|240103439|ref|YP_002959748.1| - 9.3e-09 35.3 18.1 5.1e-06 26.6 9.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|240103439|ref|YP_002959748.1| - 5.3e-08 32.9 6.4 0.001 19.2 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|240103439|ref|YP_002959748.1| - 3.2e-06 28.0 6.9 0.0023 18.8 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|240103439|ref|YP_002959748.1| - 5e-06 26.9 5.5 0.007 16.9 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_2 PF12797.7 gi|240103439|ref|YP_002959748.1| - 7.7e-06 25.7 11.0 0.0012 18.8 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|240103439|ref|YP_002959748.1| - 1.9e-05 24.7 9.9 8.5e-05 22.6 10.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|240103439|ref|YP_002959748.1| - 3.7e-05 23.8 0.7 4e-05 23.7 0.7 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|240103439|ref|YP_002959748.1| - 0.0001 23.1 3.7 0.018 15.9 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|240103439|ref|YP_002959748.1| - 0.00018 22.0 12.0 0.0063 17.0 12.1 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|240103439|ref|YP_002959748.1| - 0.00032 20.6 15.2 0.022 14.8 1.8 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|240103439|ref|YP_002959748.1| - 0.00095 19.5 11.0 0.053 14.0 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|240103439|ref|YP_002959748.1| - 0.0031 17.9 11.7 0.14 12.7 2.2 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|240103439|ref|YP_002959748.1| - 0.0093 16.7 7.7 0.018 15.8 0.8 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3343 PF11823.8 gi|240103439|ref|YP_002959748.1| - 0.032 13.7 0.1 0.074 12.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3343) Fer4_3 PF12798.7 gi|240103439|ref|YP_002959748.1| - 0.043 14.8 16.2 0.24 12.5 5.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|240103439|ref|YP_002959748.1| - 1.3 9.3 10.2 5.2 7.3 1.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|240103440|ref|YP_002959749.1| - 6.3e-08 33.2 0.1 8.6e-08 32.7 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily LepA_C PF06421.12 gi|240103440|ref|YP_002959749.1| - 0.063 13.4 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 GTP-binding protein LepA C-terminus Radical_SAM_C PF16199.5 gi|240103440|ref|YP_002959749.1| - 0.14 12.2 0.0 0.44 10.6 0.0 1.8 2 0 0 2 2 2 0 Radical_SAM C-terminal domain AAA_14 PF13173.6 gi|240103441|ref|YP_002959750.1| - 2.4e-09 37.3 0.0 4.8e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|240103441|ref|YP_002959750.1| - 5.4e-05 23.5 0.1 0.0058 16.9 0.1 2.6 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|240103441|ref|YP_002959750.1| - 0.0084 16.5 0.0 3.2 8.1 0.0 2.6 1 1 1 2 2 2 2 AAA ATPase domain Viral_helicase1 PF01443.18 gi|240103441|ref|YP_002959750.1| - 0.032 14.0 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.6 gi|240103441|ref|YP_002959750.1| - 0.053 13.2 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain MraZ PF02381.18 gi|240103442|ref|YP_002959751.1| - 2e-05 24.4 0.0 2.4e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like Lpp-LpqN PF10738.9 gi|240103443|ref|YP_002959752.1| - 0.0029 17.1 0.0 0.0031 17.0 0.0 1.1 1 0 0 1 1 1 1 Probable lipoprotein LpqN Mannitol_dh_C PF08125.13 gi|240103443|ref|YP_002959752.1| - 0.15 11.5 0.0 0.18 11.3 0.0 1.1 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain PIN PF01850.21 gi|240103444|ref|YP_002959753.1| - 2.6e-19 69.9 0.0 3.7e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|240103444|ref|YP_002959753.1| - 0.0034 17.9 0.1 0.0053 17.3 0.0 1.4 2 0 0 2 2 2 1 PIN domain PIN_3 PF13470.6 gi|240103444|ref|YP_002959753.1| - 0.005 17.6 0.0 0.011 16.4 0.0 1.7 1 1 0 1 1 1 1 PIN domain G3P_antiterm PF04309.12 gi|240103444|ref|YP_002959753.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.4 1 1 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator SurE PF01975.17 gi|240103445|ref|YP_002959754.1| - 7.1e-54 182.5 0.0 8.6e-54 182.3 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Adhesin_Dr PF04619.12 gi|240103446|ref|YP_002959755.1| - 0.093 12.7 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Dr-family adhesin Glucodextran_C PF09985.9 gi|240103447|ref|YP_002959756.1| - 1e-67 227.9 0.5 1.9e-67 227.1 0.5 1.4 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase PEGA PF08308.11 gi|240103447|ref|YP_002959756.1| - 1.3e-38 130.7 4.4 1e-19 70.2 0.4 2.7 2 0 0 2 2 2 2 PEGA domain ABC_transp_aux PF09822.9 gi|240103447|ref|YP_002959756.1| - 2.5e-05 23.9 0.0 5.7e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF2846 PF11008.8 gi|240103447|ref|YP_002959756.1| - 5.9e-05 23.0 0.1 0.0083 16.1 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2846) Mucin PF01456.17 gi|240103447|ref|YP_002959756.1| - 0.0007 19.6 26.5 0.0007 19.6 26.5 2.0 2 0 0 2 2 2 1 Mucin-like glycoprotein CarbopepD_reg_2 PF13715.6 gi|240103447|ref|YP_002959756.1| - 0.0009 19.2 6.5 0.18 11.9 0.1 3.4 1 1 1 2 2 2 2 CarboxypepD_reg-like domain DUF1533 PF07550.11 gi|240103447|ref|YP_002959756.1| - 0.052 13.4 3.2 36 4.3 0.4 4.1 3 1 0 3 3 3 0 Protein of unknown function (DUF1533) DUF4350 PF14258.6 gi|240103447|ref|YP_002959756.1| - 0.08 13.4 0.0 0.39 11.2 0.0 2.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) DUF3244 PF11589.8 gi|240103447|ref|YP_002959756.1| - 0.58 10.3 0.0 0.58 10.3 0.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF3244) TMEM154 PF15102.6 gi|240103447|ref|YP_002959756.1| - 2.1 8.3 6.0 4.2 7.3 6.0 1.5 1 0 0 1 1 1 0 TMEM154 protein family TRM PF02005.16 gi|240103449|ref|YP_002959758.1| - 5.5e-114 381.2 0.0 6.5e-114 381.0 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_16 PF10294.9 gi|240103449|ref|YP_002959758.1| - 0.06 13.1 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Ribosomal_L35Ae PF01247.18 gi|240103450|ref|YP_002959759.1| - 2.1e-14 53.4 0.0 3e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L35Ae RimM PF01782.18 gi|240103450|ref|YP_002959759.1| - 4.6e-06 26.8 0.1 0.058 13.6 0.1 2.1 2 0 0 2 2 2 2 RimM N-terminal domain Metallophos PF00149.28 gi|240103451|ref|YP_002959760.1| - 5.3e-07 30.3 0.0 6.6e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|240103451|ref|YP_002959760.1| - 0.0033 17.6 0.0 0.012 15.8 0.0 1.9 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|240103451|ref|YP_002959760.1| - 0.055 12.8 0.0 0.53 9.5 0.0 2.1 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Methyltr_RsmB-F PF01189.17 gi|240103453|ref|YP_002959762.1| - 1.2e-57 194.8 0.0 1.4e-57 194.6 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|240103453|ref|YP_002959762.1| - 9.2e-20 70.9 0.0 2.3e-19 69.6 0.0 1.7 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|240103453|ref|YP_002959762.1| - 5.8e-08 32.7 0.0 8.3e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|240103453|ref|YP_002959762.1| - 4.1e-07 30.3 0.0 6.1e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase DUF2431 PF10354.9 gi|240103453|ref|YP_002959762.1| - 0.1 12.9 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) rRNA_methylase PF06962.12 gi|240103453|ref|YP_002959762.1| - 0.14 12.2 0.0 5.3 7.0 0.0 2.2 2 0 0 2 2 2 0 Putative rRNA methylase GCD14 PF08704.10 gi|240103453|ref|YP_002959762.1| - 0.18 11.4 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit POR PF01558.18 gi|240103453|ref|YP_002959762.1| - 0.22 11.6 0.0 0.37 10.9 0.0 1.4 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase Methyltransf_25 PF13649.6 gi|240103453|ref|YP_002959762.1| - 0.22 12.3 0.0 0.55 11.0 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain GTP_EFTU PF00009.27 gi|240103454|ref|YP_002959763.1| - 1.1e-64 217.5 0.0 1.7e-64 216.9 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|240103454|ref|YP_002959763.1| - 2e-27 95.4 0.2 1.7e-26 92.4 0.0 2.6 2 1 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|240103454|ref|YP_002959763.1| - 8e-27 93.1 0.2 1.6e-26 92.2 0.2 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|240103454|ref|YP_002959763.1| - 1.7e-24 85.7 0.1 7.4e-24 83.6 0.0 2.3 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|240103454|ref|YP_002959763.1| - 1e-15 57.8 0.5 2.4e-15 56.7 0.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RF3_C PF16658.5 gi|240103454|ref|YP_002959763.1| - 1.1e-05 25.2 0.0 2.6e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain MMR_HSR1 PF01926.23 gi|240103454|ref|YP_002959763.1| - 0.0019 18.2 0.0 0.0046 17.0 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF2283 PF10049.9 gi|240103454|ref|YP_002959763.1| - 0.091 13.0 0.0 0.41 10.9 0.0 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Glyco_trans_1_2 PF13524.6 gi|240103454|ref|YP_002959763.1| - 0.17 12.3 0.1 1.1 9.7 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferases group 1 HD PF01966.22 gi|240103455|ref|YP_002959764.1| - 4.7e-10 39.7 0.3 1.5e-09 38.1 0.3 2.0 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|240103455|ref|YP_002959764.1| - 0.082 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 HDOD domain ParE_toxin PF05016.15 gi|240103456|ref|YP_002959765.1| - 1.5e-07 31.9 3.2 1.8e-07 31.7 3.2 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|240103456|ref|YP_002959765.1| - 0.00059 19.7 0.9 0.0015 18.5 0.9 1.7 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system UPF0179 PF03684.13 gi|240103458|ref|YP_002959767.1| - 1.7e-42 144.7 0.1 1.9e-42 144.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Fe-ADH_2 PF13685.6 gi|240103459|ref|YP_002959768.1| - 6.3e-73 245.6 1.1 7.7e-73 245.3 1.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|240103459|ref|YP_002959768.1| - 1e-26 93.7 2.0 1.5e-25 89.8 2.0 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|240103459|ref|YP_002959768.1| - 1.6e-12 47.2 0.3 7.7e-12 44.9 0.3 1.9 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF63 PF01889.17 gi|240103460|ref|YP_002959769.1| - 1.1e-87 294.7 13.3 1.3e-87 294.5 13.3 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Inositol_P PF00459.25 gi|240103461|ref|YP_002959770.1| - 3.2e-35 122.0 0.0 7.5e-35 120.8 0.0 1.5 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|240103461|ref|YP_002959770.1| - 2.5e-07 30.3 0.0 4.6e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Rhomboid PF01694.22 gi|240103462|ref|YP_002959771.1| - 1.9e-29 102.6 20.1 1.9e-29 102.6 20.1 2.2 1 1 1 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|240103462|ref|YP_002959771.1| - 0.0044 17.6 3.4 0.0044 17.6 3.4 2.2 2 1 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) DER1 PF04511.15 gi|240103462|ref|YP_002959771.1| - 0.14 12.1 8.9 0.4 10.6 8.9 2.0 1 1 0 1 1 1 0 Der1-like family UPRTase PF14681.6 gi|240103463|ref|YP_002959772.1| - 2e-49 167.9 0.0 2.3e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|240103463|ref|YP_002959772.1| - 4.7e-09 36.0 0.6 6.4e-09 35.5 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Cas_Cas6 PF01881.16 gi|240103464|ref|YP_002959773.1| - 2.1e-32 112.7 0.4 3.6e-32 111.9 0.1 1.5 2 0 0 2 2 2 1 CRISPR associated protein Cas6 AAA PF00004.29 gi|240103465|ref|YP_002959774.1| - 1.1e-44 152.1 0.0 2e-44 151.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|240103465|ref|YP_002959774.1| - 4.1e-13 48.9 0.3 8.9e-13 47.8 0.3 1.6 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|240103465|ref|YP_002959774.1| - 5e-13 48.8 0.0 1e-12 47.8 0.0 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_16 PF13191.6 gi|240103465|ref|YP_002959774.1| - 2.3e-08 34.6 0.4 0.00022 21.7 0.0 3.5 1 1 2 3 3 3 1 AAA ATPase domain AAA_2 PF07724.14 gi|240103465|ref|YP_002959774.1| - 4.6e-08 33.4 0.0 1.3e-06 28.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) Prot_ATP_OB_N PF17758.1 gi|240103465|ref|YP_002959774.1| - 2.7e-07 30.1 0.0 8.5e-07 28.5 0.0 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_5 PF07728.14 gi|240103465|ref|YP_002959774.1| - 2.4e-06 27.6 0.1 2.5e-05 24.3 0.1 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|240103465|ref|YP_002959774.1| - 2.4e-06 27.4 0.0 5.7e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|240103465|ref|YP_002959774.1| - 9.3e-05 21.7 0.0 0.00023 20.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|240103465|ref|YP_002959774.1| - 0.00022 21.5 0.2 0.0018 18.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|240103465|ref|YP_002959774.1| - 0.00058 20.1 0.1 0.013 15.8 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|240103465|ref|YP_002959774.1| - 0.00064 19.8 0.0 0.0022 18.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|240103465|ref|YP_002959774.1| - 0.0013 18.2 0.1 0.16 11.3 0.0 2.7 3 0 0 3 3 2 1 KaiC RNA_helicase PF00910.22 gi|240103465|ref|YP_002959774.1| - 0.0027 18.1 0.0 0.0054 17.1 0.0 1.6 1 0 0 1 1 1 1 RNA helicase NRBF2 PF08961.10 gi|240103465|ref|YP_002959774.1| - 0.0034 17.0 0.3 0.0059 16.2 0.3 1.3 1 0 0 1 1 1 1 Nuclear receptor-binding factor 2, autophagy regulator ATPase_2 PF01637.18 gi|240103465|ref|YP_002959774.1| - 0.0039 17.1 0.0 0.094 12.6 0.0 2.1 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_17 PF13207.6 gi|240103465|ref|YP_002959774.1| - 0.0047 17.3 0.0 0.013 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|240103465|ref|YP_002959774.1| - 0.0068 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|240103465|ref|YP_002959774.1| - 0.0088 15.3 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|240103465|ref|YP_002959774.1| - 0.0096 15.3 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|240103465|ref|YP_002959774.1| - 0.0097 15.6 0.1 0.035 13.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain CENP-F_leu_zip PF10473.9 gi|240103465|ref|YP_002959774.1| - 0.012 15.7 0.6 0.021 14.8 0.1 1.6 2 0 0 2 2 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin_2 PF01920.20 gi|240103465|ref|YP_002959774.1| - 0.015 15.2 1.3 0.028 14.3 0.5 1.8 2 0 0 2 2 1 0 Prefoldin subunit AAA_18 PF13238.6 gi|240103465|ref|YP_002959774.1| - 0.015 15.8 0.0 0.036 14.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|240103465|ref|YP_002959774.1| - 0.022 14.5 0.0 0.059 13.1 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein TMF_TATA_bd PF12325.8 gi|240103465|ref|YP_002959774.1| - 0.034 14.4 0.3 0.096 12.9 0.3 1.7 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding AAA_7 PF12775.7 gi|240103465|ref|YP_002959774.1| - 0.042 13.4 0.0 0.098 12.2 0.0 1.5 2 0 0 2 2 1 0 P-loop containing dynein motor region ZapB PF06005.12 gi|240103465|ref|YP_002959774.1| - 0.043 14.3 1.2 0.043 14.3 1.2 1.9 2 0 0 2 2 1 0 Cell division protein ZapB HALZ PF02183.18 gi|240103465|ref|YP_002959774.1| - 0.046 13.9 0.6 0.046 13.9 0.6 2.1 2 0 0 2 2 2 0 Homeobox associated leucine zipper Zeta_toxin PF06414.12 gi|240103465|ref|YP_002959774.1| - 0.047 13.0 0.0 0.092 12.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin SlyX PF04102.12 gi|240103465|ref|YP_002959774.1| - 0.047 14.3 0.9 0.48 11.1 0.3 2.5 2 0 0 2 2 2 0 SlyX Bac_DnaA PF00308.18 gi|240103465|ref|YP_002959774.1| - 0.06 13.2 0.0 1.7 8.5 0.0 2.8 3 0 0 3 3 3 0 Bacterial dnaA protein AAA_33 PF13671.6 gi|240103465|ref|YP_002959774.1| - 0.067 13.3 0.0 0.18 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain APG6_N PF17675.1 gi|240103465|ref|YP_002959774.1| - 0.067 13.7 0.3 0.2 12.2 0.3 1.7 1 0 0 1 1 1 0 Apg6 coiled-coil region AAA_24 PF13479.6 gi|240103465|ref|YP_002959774.1| - 0.071 12.8 0.3 0.21 11.3 0.1 1.9 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|240103465|ref|YP_002959774.1| - 0.077 12.6 1.1 0.45 10.1 0.0 2.6 3 1 1 4 4 3 0 AAA domain TsaE PF02367.17 gi|240103465|ref|YP_002959774.1| - 0.077 13.0 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Prefoldin PF02996.17 gi|240103465|ref|YP_002959774.1| - 0.083 12.8 0.3 0.21 11.5 0.3 1.6 1 0 0 1 1 1 0 Prefoldin subunit NTPase_1 PF03266.15 gi|240103465|ref|YP_002959774.1| - 0.09 12.7 0.2 1.4 8.8 0.1 2.7 2 1 1 3 3 3 0 NTPase Sigma54_activat PF00158.26 gi|240103465|ref|YP_002959774.1| - 0.09 12.5 0.0 0.65 9.7 0.0 2.3 3 0 0 3 3 3 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|240103465|ref|YP_002959774.1| - 0.092 11.9 0.0 0.21 10.8 0.0 1.5 2 0 0 2 2 1 0 NB-ARC domain DUF2730 PF10805.8 gi|240103465|ref|YP_002959774.1| - 0.098 12.8 1.8 7.8 6.7 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2730) AAA_19 PF13245.6 gi|240103465|ref|YP_002959774.1| - 0.1 12.9 0.1 0.19 12.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain TSNAXIP1_N PF15739.5 gi|240103465|ref|YP_002959774.1| - 0.12 12.8 0.1 0.24 11.8 0.1 1.4 1 0 0 1 1 1 0 Translin-associated factor X-interacting N-terminus Parvo_NS1 PF01057.17 gi|240103465|ref|YP_002959774.1| - 0.15 11.1 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran_CTD PF16326.5 gi|240103465|ref|YP_002959774.1| - 0.16 12.2 2.0 3 8.2 0.9 2.5 2 0 0 2 2 2 0 ABC transporter C-terminal domain ABC_tran PF00005.27 gi|240103465|ref|YP_002959774.1| - 0.17 12.4 0.0 0.6 10.6 0.0 1.9 2 0 0 2 2 1 0 ABC transporter MAD PF05557.13 gi|240103465|ref|YP_002959774.1| - 0.21 9.9 1.8 0.31 9.4 1.8 1.2 1 0 0 1 1 1 0 Mitotic checkpoint protein DHR10 PF18595.1 gi|240103465|ref|YP_002959774.1| - 0.74 9.9 5.2 0.39 10.8 2.9 1.7 2 0 0 2 2 1 0 Designed helical repeat protein 10 domain Peptidase_U32_C PF16325.5 gi|240103466|ref|YP_002959775.1| - 0.0058 16.9 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase family U32 C-terminal domain RIO1 PF01163.22 gi|240103467|ref|YP_002959776.1| - 3.3e-50 170.3 0.0 4.1e-50 170.0 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|240103467|ref|YP_002959776.1| - 5.5e-23 81.0 0.0 1.2e-22 79.9 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|240103467|ref|YP_002959776.1| - 5.6e-08 33.0 1.9 0.00012 22.1 0.5 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|240103467|ref|YP_002959776.1| - 4.8e-06 26.1 0.5 1.9e-05 24.2 0.5 1.7 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|240103467|ref|YP_002959776.1| - 0.026 14.1 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) DDE_Tnp_1 PF01609.21 gi|240103467|ref|YP_002959776.1| - 0.77 9.4 3.1 4.4 6.9 3.1 2.1 1 1 0 1 1 1 0 Transposase DDE domain TPR_2 PF07719.17 gi|240103468|ref|YP_002959777.1| - 0.00057 19.8 0.4 0.13 12.4 0.1 3.0 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|240103468|ref|YP_002959777.1| - 0.0013 18.6 0.1 0.33 11.1 0.0 3.6 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|240103468|ref|YP_002959777.1| - 0.019 15.2 0.0 1.6 9.1 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|240103468|ref|YP_002959777.1| - 0.033 15.0 0.1 3.2 8.8 0.0 2.8 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|240103468|ref|YP_002959777.1| - 0.078 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat-like domain RsbRD_N PF14361.6 gi|240103468|ref|YP_002959777.1| - 0.18 12.5 1.0 1.4 9.6 0.1 2.1 2 0 0 2 2 2 0 RsbT co-antagonist protein rsbRD N-terminal domain Radical_SAM PF04055.21 gi|240103469|ref|YP_002959778.1| - 3e-09 37.5 0.0 1.9e-08 34.9 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily MFS_1 PF07690.16 gi|240103470|ref|YP_002959779.1| - 4.5e-48 164.0 68.4 1.6e-41 142.5 47.6 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|240103470|ref|YP_002959779.1| - 1.2e-12 47.4 27.0 0.00016 20.6 1.0 3.1 1 1 2 3 3 3 3 MFS_1 like family MFS_3 PF05977.13 gi|240103470|ref|YP_002959779.1| - 4.6e-08 31.9 18.0 5.8e-08 31.6 18.0 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector PUCC PF03209.15 gi|240103470|ref|YP_002959779.1| - 1.9e-06 27.1 7.8 1.9e-06 27.1 7.8 1.8 1 1 0 1 1 1 1 PUCC protein Sugar_tr PF00083.24 gi|240103470|ref|YP_002959779.1| - 0.06 12.2 31.4 0.19 10.6 14.8 3.7 1 1 0 2 2 2 0 Sugar (and other) transporter Asparaginase_2 PF01112.18 gi|240103471|ref|YP_002959780.1| - 6.4e-94 314.4 3.1 7.9e-94 314.1 3.1 1.0 1 0 0 1 1 1 1 Asparaginase EamA PF00892.20 gi|240103472|ref|YP_002959781.1| - 1.1e-46 158.4 33.5 3e-26 92.2 9.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|240103472|ref|YP_002959781.1| - 5.6e-08 32.5 6.5 0.00058 19.3 1.6 2.3 1 1 1 2 2 2 2 Triose-phosphate Transporter family Sugar_transport PF06800.12 gi|240103472|ref|YP_002959781.1| - 2.4e-06 27.1 10.1 0.0027 17.1 2.9 2.5 2 1 1 3 3 3 2 Sugar transport protein TMEM234 PF10639.9 gi|240103472|ref|YP_002959781.1| - 0.0078 16.2 6.4 0.38 10.8 0.3 2.4 2 1 0 2 2 2 2 Putative transmembrane family 234 GNVR PF13807.6 gi|240103472|ref|YP_002959781.1| - 0.25 11.3 0.7 4.3 7.3 0.0 2.9 3 0 0 3 3 3 0 G-rich domain on putative tyrosine kinase Alpha_Helical PF18489.1 gi|240103473|ref|YP_002959782.1| - 3.5e-55 185.6 0.5 4.9e-55 185.1 0.5 1.2 1 0 0 1 1 1 1 Alpha helical domain tRNA_bind PF01588.20 gi|240103473|ref|YP_002959782.1| - 2e-18 66.3 0.1 4.3e-18 65.2 0.1 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain DUF3400 PF11880.8 gi|240103473|ref|YP_002959782.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) TPR_12 PF13424.6 gi|240103474|ref|YP_002959783.1| - 2.5e-09 37.3 0.4 2.3e-05 24.6 0.0 3.6 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|240103474|ref|YP_002959783.1| - 7.3e-05 22.6 2.7 2.6 8.3 0.5 5.1 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|240103474|ref|YP_002959783.1| - 0.00015 21.3 0.0 0.00053 19.5 0.0 1.9 2 0 0 2 2 2 1 MalT-like TPR region PPR PF01535.20 gi|240103474|ref|YP_002959783.1| - 0.0012 18.9 0.9 41 4.7 0.0 5.3 5 0 0 5 5 5 0 PPR repeat TPR_15 PF13429.6 gi|240103474|ref|YP_002959783.1| - 0.013 14.7 0.0 0.18 11.0 0.0 2.4 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|240103474|ref|YP_002959783.1| - 0.07 13.4 0.0 1.5 9.3 0.0 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|240103474|ref|YP_002959783.1| - 0.088 12.7 0.1 21 5.2 0.0 3.8 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|240103475|ref|YP_002959784.1| - 0.00021 21.5 2.2 0.0052 17.0 0.0 3.7 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|240103475|ref|YP_002959784.1| - 0.036 14.2 8.1 3.2 8.1 0.0 5.1 7 0 0 7 7 7 0 Tetratricopeptide repeat Utp13 PF08625.11 gi|240103475|ref|YP_002959784.1| - 0.083 12.8 0.1 3.5 7.5 0.0 2.8 3 0 0 3 3 3 0 Utp13 specific WD40 associated domain TPR_1 PF00515.28 gi|240103475|ref|YP_002959784.1| - 0.12 12.2 1.6 39 4.3 0.0 4.0 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_19 PF14559.6 gi|240103475|ref|YP_002959784.1| - 0.22 12.1 1.8 3.6 8.2 0.1 3.3 4 0 0 4 4 4 0 Tetratricopeptide repeat EMG1 PF03587.14 gi|240103476|ref|YP_002959785.1| - 1.5e-48 165.0 0.0 1.7e-48 164.9 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Zincin_1 PF06262.11 gi|240103476|ref|YP_002959785.1| - 0.036 14.2 0.1 2.9 8.0 0.0 2.5 2 1 0 2 2 2 0 Zincin-like metallopeptidase Sacchrp_dh_C PF16653.5 gi|240103477|ref|YP_002959786.1| - 3.3e-31 109.4 0.0 4.3e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|240103477|ref|YP_002959786.1| - 4.6e-18 65.7 0.0 7.7e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|240103477|ref|YP_002959786.1| - 0.0015 17.9 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Semialdhyde_dh PF01118.24 gi|240103477|ref|YP_002959786.1| - 0.037 14.5 0.1 0.12 12.8 0.0 1.9 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|240103477|ref|YP_002959786.1| - 0.045 14.0 0.0 0.16 12.2 0.0 2.0 1 1 1 2 2 2 0 TrkA-N domain GFO_IDH_MocA PF01408.22 gi|240103477|ref|YP_002959786.1| - 0.049 14.5 0.0 0.08 13.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.19 gi|240103477|ref|YP_002959786.1| - 0.076 13.7 0.0 0.25 12.0 0.0 1.9 1 1 0 1 1 1 0 CoA binding domain NAD_binding_10 PF13460.6 gi|240103477|ref|YP_002959786.1| - 0.089 12.7 0.0 0.18 11.6 0.0 1.5 1 1 0 1 1 1 0 NAD(P)H-binding Shikimate_DH PF01488.20 gi|240103477|ref|YP_002959786.1| - 0.095 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|240103477|ref|YP_002959786.1| - 0.12 12.0 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|240103477|ref|YP_002959786.1| - 0.13 12.2 0.0 0.79 9.6 0.0 2.2 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GARS_N PF02844.15 gi|240103477|ref|YP_002959786.1| - 0.17 12.7 0.0 0.42 11.4 0.0 1.8 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain HAD_2 PF13419.6 gi|240103478|ref|YP_002959787.1| - 2.6e-05 24.4 0.0 4e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|240103478|ref|YP_002959787.1| - 0.00062 20.2 0.2 0.00096 19.6 0.2 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240103478|ref|YP_002959787.1| - 0.0014 19.0 0.0 0.0079 16.5 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|240103478|ref|YP_002959787.1| - 0.0019 18.3 0.0 1.3 9.1 0.0 2.4 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase DUF1704 PF08014.11 gi|240103478|ref|YP_002959787.1| - 0.14 11.2 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1704) eIF-1a PF01176.19 gi|240103479|ref|YP_002959788.1| - 2.9e-20 71.8 0.6 6.1e-20 70.8 0.6 1.6 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 gi|240103479|ref|YP_002959788.1| - 1.5e-05 24.6 0.2 3.1e-05 23.6 0.2 1.6 1 0 0 1 1 1 1 RsgA N-terminal domain DUF4863 PF16155.5 gi|240103479|ref|YP_002959788.1| - 0.11 12.3 0.1 0.2 11.5 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4863) RIO1 PF01163.22 gi|240103480|ref|YP_002959789.1| - 1.9e-53 180.9 0.0 3e-53 180.2 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|240103480|ref|YP_002959789.1| - 8.8e-05 22.5 0.0 0.00023 21.2 0.0 1.6 1 1 1 2 2 2 1 Phosphotransferase enzyme family KH_1 PF00013.29 gi|240103481|ref|YP_002959790.1| - 1.8e-16 59.7 5.7 1e-09 38.1 0.2 2.3 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|240103481|ref|YP_002959790.1| - 4.7e-08 33.0 0.0 7.7e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Krr1 KH1 domain KH_2 PF07650.17 gi|240103481|ref|YP_002959790.1| - 5.3e-05 23.0 5.5 0.0039 17.0 0.5 2.5 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|240103481|ref|YP_002959790.1| - 0.0086 15.9 6.2 0.51 10.3 0.1 2.8 2 1 0 2 2 2 2 KH domain SLS PF14611.6 gi|240103481|ref|YP_002959790.1| - 0.011 15.6 0.1 0.02 14.7 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator DUF3487 PF11990.8 gi|240103481|ref|YP_002959790.1| - 0.14 12.1 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) Topo-VIb_trans PF09239.11 gi|240103482|ref|YP_002959791.1| - 9.9e-58 194.5 0.0 2e-57 193.5 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|240103482|ref|YP_002959791.1| - 4e-12 46.6 0.1 9e-12 45.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|240103482|ref|YP_002959791.1| - 1.3e-09 38.0 0.0 2.8e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Phage_min_cap2 PF06152.11 gi|240103482|ref|YP_002959791.1| - 0.054 12.4 2.3 0.051 12.5 0.3 1.8 2 0 0 2 2 2 0 Phage minor capsid protein 2 DUF3928 PF13065.6 gi|240103482|ref|YP_002959791.1| - 0.2 12.5 1.6 0.51 11.1 1.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3928) TP6A_N PF04406.14 gi|240103483|ref|YP_002959792.1| - 7.3e-20 70.7 0.0 1.2e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|240103483|ref|YP_002959792.1| - 0.02 14.8 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) DUF530 PF04409.12 gi|240103484|ref|YP_002959793.1| - 1.3e-26 93.1 5.1 3e-23 82.0 1.0 3.6 2 1 1 3 3 3 3 Protein of unknown function (DUF530) HTH_23 PF13384.6 gi|240103485|ref|YP_002959794.1| - 6.7e-06 25.7 0.0 2.8e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain DUF1699 PF08004.11 gi|240103485|ref|YP_002959794.1| - 1.3e-05 24.8 0.0 2.2e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_7 PF02796.15 gi|240103485|ref|YP_002959794.1| - 0.00016 21.6 0.6 0.00036 20.6 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.12 gi|240103485|ref|YP_002959794.1| - 0.00027 20.6 0.0 0.00064 19.3 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|240103485|ref|YP_002959794.1| - 0.00088 19.3 0.0 0.062 13.3 0.0 2.3 1 1 1 2 2 2 1 Winged helix-turn helix GerE PF00196.19 gi|240103485|ref|YP_002959794.1| - 0.0018 17.8 0.0 0.0041 16.6 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_28 PF13518.6 gi|240103485|ref|YP_002959794.1| - 0.011 15.9 0.0 0.027 14.6 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain GTF2I PF02946.14 gi|240103485|ref|YP_002959794.1| - 0.033 14.3 0.0 0.066 13.3 0.0 1.5 1 0 0 1 1 1 0 GTF2I-like repeat AT_hook PF02178.19 gi|240103485|ref|YP_002959794.1| - 0.042 13.7 1.3 0.12 12.3 1.3 1.8 1 0 0 1 1 1 0 AT hook motif HTH_38 PF13936.6 gi|240103485|ref|YP_002959794.1| - 0.075 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4096 PF13340.6 gi|240103485|ref|YP_002959794.1| - 0.08 13.2 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) HTH_32 PF13565.6 gi|240103485|ref|YP_002959794.1| - 0.09 13.4 0.1 0.35 11.5 0.0 2.0 1 1 0 2 2 2 0 Homeodomain-like domain SEP PF08059.13 gi|240103485|ref|YP_002959794.1| - 0.15 12.6 0.0 0.56 10.8 0.0 1.9 2 1 0 2 2 2 0 SEP domain DUF4129 PF13559.6 gi|240103486|ref|YP_002959795.1| - 1.2e-06 28.6 0.1 2e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) BatA PF07584.11 gi|240103486|ref|YP_002959795.1| - 0.0099 16.2 0.1 0.0099 16.2 0.1 2.8 3 1 0 3 3 3 1 Aerotolerance regulator N-terminal OppC_N PF12911.7 gi|240103486|ref|YP_002959795.1| - 0.017 15.1 0.9 0.12 12.4 0.0 2.5 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C ABC2_membrane_6 PF06182.11 gi|240103486|ref|YP_002959795.1| - 0.028 14.2 0.8 0.044 13.6 0.8 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2207 PF09972.9 gi|240103486|ref|YP_002959795.1| - 1.4 7.6 3.5 0.42 9.3 0.1 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) GCHY-1 PF02649.14 gi|240103487|ref|YP_002959796.1| - 1.2e-65 221.6 3.9 1.5e-65 221.3 3.9 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|240103487|ref|YP_002959796.1| - 0.038 14.5 3.6 1.5 9.4 0.1 2.8 2 1 0 2 2 2 0 Dihydroneopterin aldolase PHA_synth_III_E PF09712.10 gi|240103487|ref|YP_002959796.1| - 0.22 10.6 0.5 0.34 10.0 0.5 1.3 1 0 0 1 1 1 0 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) ATP-cone PF03477.16 gi|240103487|ref|YP_002959796.1| - 0.56 10.8 3.7 42 4.8 0.0 3.3 2 1 1 3 3 3 0 ATP cone domain MMR_HSR1 PF01926.23 gi|240103488|ref|YP_002959797.1| - 5.6e-23 81.2 0.0 8.7e-23 80.6 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|240103488|ref|YP_002959797.1| - 4e-13 49.2 0.1 5.9e-13 48.6 0.1 1.3 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|240103488|ref|YP_002959797.1| - 9.7e-10 38.3 0.7 1.5e-06 27.9 0.1 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|240103488|ref|YP_002959797.1| - 8e-09 35.8 0.1 0.00073 19.6 0.1 2.3 1 1 1 2 2 2 2 Dynamin family RsgA_GTPase PF03193.16 gi|240103488|ref|YP_002959797.1| - 2.7e-07 30.6 2.3 0.005 16.8 0.2 2.5 2 1 0 2 2 2 2 RsgA GTPase PduV-EutP PF10662.9 gi|240103488|ref|YP_002959797.1| - 1.3e-06 28.2 0.3 0.00058 19.6 0.0 2.1 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|240103488|ref|YP_002959797.1| - 6.4e-06 25.9 0.3 4.2e-05 23.2 0.0 1.9 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Roc PF08477.13 gi|240103488|ref|YP_002959797.1| - 6.6e-06 26.3 0.3 0.011 15.9 0.1 2.2 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase Arf PF00025.21 gi|240103488|ref|YP_002959797.1| - 1.6e-05 24.5 1.9 0.0045 16.5 0.3 2.1 2 0 0 2 2 2 2 ADP-ribosylation factor family MMR_HSR1_Xtn PF16897.5 gi|240103488|ref|YP_002959797.1| - 1.7e-05 24.7 0.1 2.7e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Septin PF00735.18 gi|240103488|ref|YP_002959797.1| - 0.00018 20.9 0.5 0.15 11.3 0.0 2.1 2 0 0 2 2 2 2 Septin Ras PF00071.22 gi|240103488|ref|YP_002959797.1| - 0.00062 19.4 0.4 0.44 10.1 0.1 2.2 2 1 0 2 2 2 2 Ras family AAA_22 PF13401.6 gi|240103488|ref|YP_002959797.1| - 0.0068 16.7 0.6 0.05 13.9 0.6 2.0 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|240103488|ref|YP_002959797.1| - 0.01 15.6 0.4 0.19 11.5 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein GBP PF02263.19 gi|240103488|ref|YP_002959797.1| - 0.018 14.3 0.3 0.042 13.1 0.1 1.7 2 1 0 2 2 2 0 Guanylate-binding protein, N-terminal domain AAA_28 PF13521.6 gi|240103488|ref|YP_002959797.1| - 0.024 14.9 0.1 0.057 13.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain NOG1 PF06858.14 gi|240103488|ref|YP_002959797.1| - 0.027 14.3 1.8 0.06 13.1 0.3 2.3 2 1 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) AAA_29 PF13555.6 gi|240103488|ref|YP_002959797.1| - 0.093 12.5 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|240103488|ref|YP_002959797.1| - 0.1 13.1 0.7 0.14 12.7 0.7 1.6 1 1 0 1 1 1 0 ABC transporter Gtr1_RagA PF04670.12 gi|240103488|ref|YP_002959797.1| - 0.15 11.4 0.8 0.19 11.0 0.2 1.5 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region AAA_24 PF13479.6 gi|240103488|ref|YP_002959797.1| - 0.16 11.7 0.2 0.21 11.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain PrmC_N PF17827.1 gi|240103488|ref|YP_002959797.1| - 0.17 12.5 1.2 0.98 10.1 0.2 2.4 2 1 1 3 3 2 0 PrmC N-terminal domain SRPRB PF09439.10 gi|240103488|ref|YP_002959797.1| - 0.66 9.4 2.3 7.7 5.9 2.3 2.3 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit HD_3 PF13023.6 gi|240103490|ref|YP_002959799.1| - 3.7e-25 88.8 0.0 4.3e-25 88.5 0.0 1.1 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|240103490|ref|YP_002959799.1| - 2.8e-16 59.8 0.0 7.6e-16 58.4 0.0 1.6 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|240103490|ref|YP_002959799.1| - 1.1e-11 45.0 0.4 4.6e-10 39.8 0.1 2.6 2 1 0 2 2 2 1 HD domain HDOD PF08668.12 gi|240103490|ref|YP_002959799.1| - 0.035 13.6 0.0 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 HDOD domain Ferritin PF00210.24 gi|240103490|ref|YP_002959799.1| - 0.049 13.6 0.1 0.078 12.9 0.1 1.3 1 0 0 1 1 1 0 Ferritin-like domain DUF234 PF03008.14 gi|240103491|ref|YP_002959800.1| - 1.6e-32 111.9 0.7 3.2e-32 110.9 0.7 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|240103491|ref|YP_002959800.1| - 6.7e-20 72.0 0.0 5.6e-18 65.7 0.0 2.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|240103491|ref|YP_002959800.1| - 7.3e-08 32.5 0.0 1.5e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240103491|ref|YP_002959800.1| - 2.6e-05 24.7 3.9 0.00061 20.2 2.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain UPF0102 PF02021.17 gi|240103491|ref|YP_002959800.1| - 0.00081 19.6 0.1 0.002 18.3 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 AAA_22 PF13401.6 gi|240103491|ref|YP_002959800.1| - 0.0021 18.3 0.1 0.0089 16.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain HTH_5 PF01022.20 gi|240103491|ref|YP_002959800.1| - 0.0031 17.3 0.0 0.0078 16.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|240103491|ref|YP_002959800.1| - 0.17 11.7 0.0 0.35 10.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain SBP_bac_11 PF13531.6 gi|240103492|ref|YP_002959801.1| - 3.8e-37 128.3 0.0 4.9e-37 127.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|240103492|ref|YP_002959801.1| - 9.6e-17 61.9 1.2 1.9e-16 60.9 1.2 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|240103492|ref|YP_002959801.1| - 0.0025 17.3 0.1 0.0066 15.9 0.0 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|240103493|ref|YP_002959802.1| - 2.7e-21 76.2 14.0 2.7e-21 76.2 14.0 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4191 PF13829.6 gi|240103493|ref|YP_002959802.1| - 1.7 8.0 5.3 0.3 10.4 1.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) ABC_tran PF00005.27 gi|240103494|ref|YP_002959803.1| - 2.7e-33 115.4 0.0 4.4e-33 114.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|240103494|ref|YP_002959803.1| - 2.9e-16 59.5 0.0 7.4e-16 58.2 0.0 1.8 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.10 gi|240103494|ref|YP_002959803.1| - 2.7e-10 40.3 0.0 6.9e-09 35.8 0.0 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|240103494|ref|YP_002959803.1| - 1.1e-06 28.7 0.9 0.018 14.8 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240103494|ref|YP_002959803.1| - 6.1e-05 22.5 0.0 0.028 13.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|240103494|ref|YP_002959803.1| - 0.00026 20.7 0.0 0.00044 19.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain CysA_C_terminal PF17850.1 gi|240103494|ref|YP_002959803.1| - 0.0003 21.3 0.8 0.0012 19.3 0.1 2.3 2 0 0 2 2 2 1 CysA C-terminal regulatory domain SbcCD_C PF13558.6 gi|240103494|ref|YP_002959803.1| - 0.00064 19.9 0.1 0.014 15.6 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit TOBE_3 PF12857.7 gi|240103494|ref|YP_002959803.1| - 0.0048 16.8 0.1 0.074 13.0 0.0 2.5 2 0 0 2 2 2 1 TOBE-like domain AAA_16 PF13191.6 gi|240103494|ref|YP_002959803.1| - 0.0062 16.9 0.0 0.009 16.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|240103494|ref|YP_002959803.1| - 0.0076 16.8 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain OB_MalK PF17912.1 gi|240103494|ref|YP_002959803.1| - 0.015 16.1 0.9 0.082 13.7 0.8 2.4 2 0 0 2 2 1 0 MalK OB fold domain AAA_30 PF13604.6 gi|240103494|ref|YP_002959803.1| - 0.053 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|240103494|ref|YP_002959803.1| - 0.056 12.5 0.0 0.11 11.5 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|240103494|ref|YP_002959803.1| - 0.086 12.8 0.0 0.34 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|240103494|ref|YP_002959803.1| - 0.091 12.7 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|240103494|ref|YP_002959803.1| - 0.1 12.9 0.1 0.23 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|240103494|ref|YP_002959803.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI VAPB_antitox PF02697.14 gi|240103495|ref|YP_002959804.1| - 0.034 14.9 0.9 0.056 14.2 0.9 1.3 1 0 0 1 1 1 0 Putative antitoxin Rota_NSP4 PF01452.16 gi|240103495|ref|YP_002959804.1| - 0.59 9.8 3.7 2.1 8.0 3.7 1.7 1 1 0 1 1 1 0 Rotavirus non structural protein MoeA_N PF03453.17 gi|240103496|ref|YP_002959805.1| - 2.2e-48 164.0 0.4 3.3e-48 163.4 0.4 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoeA_C PF03454.15 gi|240103496|ref|YP_002959805.1| - 7.4e-18 64.5 0.0 2.2e-17 63.0 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MoCF_biosynth PF00994.24 gi|240103496|ref|YP_002959805.1| - 5.2e-17 61.9 0.0 1.6e-16 60.3 0.0 1.8 1 1 0 1 1 1 1 Probable molybdopterin binding domain 7TMR-HDED PF07697.11 gi|240103496|ref|YP_002959805.1| - 0.12 12.5 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 7TM-HD extracellular MoCF_biosynth PF00994.24 gi|240103497|ref|YP_002959806.1| - 2.7e-36 124.4 0.7 3.3e-36 124.1 0.7 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain AtuA PF07287.11 gi|240103497|ref|YP_002959806.1| - 0.06 12.0 0.0 0.081 11.6 0.0 1.1 1 0 0 1 1 1 0 Acyclic terpene utilisation family protein AtuA Arm-DNA-bind_3 PF13356.6 gi|240103498|ref|YP_002959807.1| - 0.098 13.0 0.0 0.13 12.7 0.0 1.2 1 0 0 1 1 1 0 Arm DNA-binding domain Asparaginase PF00710.20 gi|240103499|ref|YP_002959808.1| - 1.9e-60 203.7 0.0 3.2e-60 203.0 0.0 1.4 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|240103499|ref|YP_002959808.1| - 2.7e-29 101.7 0.2 5.6e-29 100.7 0.1 1.6 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain MFS_1 PF07690.16 gi|240103500|ref|YP_002959809.1| - 6e-39 133.9 29.0 3.8e-22 78.7 4.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|240103500|ref|YP_002959809.1| - 5.8e-05 22.1 15.8 0.00056 18.9 15.7 2.0 1 1 0 1 1 1 1 MFS_1 like family PUCC PF03209.15 gi|240103500|ref|YP_002959809.1| - 0.00019 20.6 13.3 0.0037 16.3 3.7 3.3 3 1 1 4 4 4 2 PUCC protein MFS_2 PF13347.6 gi|240103500|ref|YP_002959809.1| - 0.00022 19.9 17.5 0.00087 18.0 16.8 2.3 1 1 0 1 1 1 1 MFS/sugar transport protein SPC12 PF06645.13 gi|240103500|ref|YP_002959809.1| - 4.6 7.4 13.0 11 6.2 2.2 3.7 3 0 0 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) PadR PF03551.14 gi|240103501|ref|YP_002959810.1| - 1.1e-15 57.3 0.3 1.3e-15 57.0 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|240103501|ref|YP_002959810.1| - 1.2e-05 25.9 0.0 1.4e-05 25.7 0.0 1.1 1 0 0 1 1 1 1 Replication terminator protein FUR PF01475.19 gi|240103501|ref|YP_002959810.1| - 0.0004 20.5 0.0 0.00044 20.4 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family DUF505 PF04458.12 gi|240103501|ref|YP_002959810.1| - 0.00051 18.6 0.1 0.00091 17.7 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF505) HTH_34 PF13601.6 gi|240103501|ref|YP_002959810.1| - 0.00054 20.1 0.0 0.00069 19.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|240103501|ref|YP_002959810.1| - 0.0022 17.8 0.0 0.0022 17.8 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.6 gi|240103501|ref|YP_002959810.1| - 0.0025 18.3 1.0 0.0071 16.8 0.2 2.1 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|240103501|ref|YP_002959810.1| - 0.011 15.7 0.1 0.019 14.9 0.1 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Replic_Relax PF13814.6 gi|240103501|ref|YP_002959810.1| - 0.013 15.6 0.1 0.014 15.5 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_45 PF14947.6 gi|240103501|ref|YP_002959810.1| - 0.028 14.4 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.22 gi|240103501|ref|YP_002959810.1| - 0.029 14.3 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 MarR family PurS PF02700.14 gi|240103501|ref|YP_002959810.1| - 0.048 13.8 0.0 0.087 13.0 0.0 1.5 2 0 0 2 2 2 0 Phosphoribosylformylglycinamidine (FGAM) synthase DUF4364 PF14277.6 gi|240103501|ref|YP_002959810.1| - 0.074 12.8 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Penicillinase_R PF03965.16 gi|240103501|ref|YP_002959810.1| - 0.075 13.4 0.0 0.085 13.2 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor ANT PF03374.14 gi|240103501|ref|YP_002959810.1| - 0.075 13.4 0.0 0.091 13.1 0.0 1.2 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_29 PF13551.6 gi|240103501|ref|YP_002959810.1| - 0.11 12.5 0.2 0.33 11.0 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn helix Peptidase_S58 PF03576.14 gi|240103502|ref|YP_002959811.1| - 3e-108 361.9 0.4 3.5e-108 361.6 0.4 1.0 1 0 0 1 1 1 1 Peptidase family S58 AP_endonuc_2 PF01261.24 gi|240103503|ref|YP_002959812.1| - 2.3e-20 73.0 0.3 3.1e-20 72.5 0.3 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Amidohydro_1 PF01979.20 gi|240103503|ref|YP_002959812.1| - 0.008 15.5 0.9 0.068 12.5 0.1 2.2 1 1 1 3 3 3 1 Amidohydrolase family DUF2345 PF10106.9 gi|240103503|ref|YP_002959812.1| - 0.051 13.4 0.0 0.082 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2345) BLOC1_2 PF10046.9 gi|240103504|ref|YP_002959813.1| - 0.11 12.8 11.2 1.5 9.2 1.1 4.6 3 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FapA PF03961.13 gi|240103504|ref|YP_002959813.1| - 0.24 10.0 19.7 0.69 8.5 5.9 2.9 2 1 1 3 3 3 0 Flagellar Assembly Protein A Sec34 PF04136.15 gi|240103504|ref|YP_002959813.1| - 0.61 9.9 6.8 0.29 11.0 0.8 3.0 2 1 1 3 3 3 0 Sec34-like family DUF1664 PF07889.12 gi|240103504|ref|YP_002959813.1| - 0.63 10.1 11.1 1.1 9.4 0.5 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|240103504|ref|YP_002959813.1| - 0.64 8.6 14.0 0.97 8.0 13.0 1.8 1 1 1 2 2 2 0 AAA domain Snapin_Pallidin PF14712.6 gi|240103504|ref|YP_002959813.1| - 0.71 10.3 18.7 0.34 11.4 2.5 4.7 4 2 1 5 5 5 0 Snapin/Pallidin DUF2203 PF09969.9 gi|240103504|ref|YP_002959813.1| - 1.2 9.9 16.8 1.7 9.3 3.5 3.8 1 1 0 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF16 PF01519.16 gi|240103504|ref|YP_002959813.1| - 1.5 9.4 10.8 0.66 10.5 1.0 3.3 3 2 1 4 4 3 0 Protein of unknown function DUF16 Seryl_tRNA_N PF02403.22 gi|240103504|ref|YP_002959813.1| - 1.5 9.1 24.2 1.3 9.3 0.8 5.1 3 3 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain MMtag PF10159.9 gi|240103504|ref|YP_002959813.1| - 1.7 9.0 3.9 0.73 10.2 0.1 2.5 2 1 0 2 2 2 0 Multiple myeloma tumor-associated Syntaxin-6_N PF09177.11 gi|240103504|ref|YP_002959813.1| - 2.1 9.0 16.6 4.3 8.0 0.2 3.9 2 1 0 2 2 1 0 Syntaxin 6, N-terminal XhlA PF10779.9 gi|240103504|ref|YP_002959813.1| - 2.4 8.4 11.6 8 6.7 1.2 3.6 2 2 1 3 3 3 0 Haemolysin XhlA TMPIT PF07851.13 gi|240103504|ref|YP_002959813.1| - 2.7 7.1 10.7 6 6.0 2.9 2.3 2 0 0 2 2 2 0 TMPIT-like protein DUF4140 PF13600.6 gi|240103504|ref|YP_002959813.1| - 3.6 8.1 15.7 6.6 7.2 0.4 3.8 2 2 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) GCN5L1 PF06320.13 gi|240103504|ref|YP_002959813.1| - 4.4 7.5 9.4 4.6 7.4 0.3 3.9 4 0 0 4 4 4 0 GCN5-like protein 1 (GCN5L1) Rab5-bind PF09311.11 gi|240103504|ref|YP_002959813.1| - 6 6.2 23.1 0.44 9.9 6.1 3.2 3 1 0 3 3 3 0 Rabaptin-like protein Fmp27_WPPW PF10359.9 gi|240103504|ref|YP_002959813.1| - 6.3 5.5 14.2 1.4 7.7 1.6 2.3 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain DUF4208 PF13907.6 gi|240103504|ref|YP_002959813.1| - 6.4 7.3 10.8 7.4 7.1 0.1 4.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4208) ORF6C PF10552.9 gi|240103504|ref|YP_002959813.1| - 7.5 6.7 8.3 1.9 8.6 2.4 2.7 2 0 0 2 2 2 0 ORF6C domain DUF373 PF04123.13 gi|240103505|ref|YP_002959814.1| - 1.7e-92 310.5 14.4 2e-92 310.2 14.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) SPW PF03779.14 gi|240103505|ref|YP_002959814.1| - 1.8 8.2 0.0 1.8 8.2 0.0 3.0 3 0 0 3 3 3 0 SPW repeat Thiamine_BP PF01910.17 gi|240103506|ref|YP_002959815.1| - 2.1e-32 110.9 0.6 2.5e-32 110.7 0.6 1.1 1 0 0 1 1 1 1 Thiamine-binding protein YscJ_FliF PF01514.17 gi|240103506|ref|YP_002959815.1| - 0.047 13.3 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 Secretory protein of YscJ/FliF family HGTP_anticodon PF03129.20 gi|240103506|ref|YP_002959815.1| - 0.11 12.6 1.0 0.48 10.6 0.5 2.4 1 1 1 2 2 2 0 Anticodon binding domain AMMECR1 PF01871.17 gi|240103507|ref|YP_002959816.1| - 7.1e-56 188.4 0.0 8e-56 188.2 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 ABC_tran PF00005.27 gi|240103508|ref|YP_002959817.1| - 7e-27 94.6 0.0 1e-26 94.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103508|ref|YP_002959817.1| - 5.6e-16 59.2 0.5 2.3e-09 37.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240103508|ref|YP_002959817.1| - 3.4e-10 39.7 0.2 4.4e-08 32.8 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|240103508|ref|YP_002959817.1| - 5.6e-07 29.2 0.2 1e-06 28.4 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|240103508|ref|YP_002959817.1| - 1.3e-06 28.7 0.3 7.6e-06 26.2 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240103508|ref|YP_002959817.1| - 2.7e-05 24.6 0.0 4.4e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|240103508|ref|YP_002959817.1| - 3.1e-05 23.9 0.0 0.066 12.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|240103508|ref|YP_002959817.1| - 0.00017 22.2 0.6 0.00022 21.8 0.6 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|240103508|ref|YP_002959817.1| - 0.0002 21.9 0.2 0.032 14.8 0.2 2.3 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|240103508|ref|YP_002959817.1| - 0.0003 20.6 0.3 0.35 10.6 0.1 2.1 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_30 PF13604.6 gi|240103508|ref|YP_002959817.1| - 0.00034 20.4 1.4 0.0048 16.6 0.2 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|240103508|ref|YP_002959817.1| - 0.00041 20.8 1.8 0.0066 16.9 1.8 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|240103508|ref|YP_002959817.1| - 0.00044 20.2 0.2 0.00073 19.5 0.2 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|240103508|ref|YP_002959817.1| - 0.0025 17.4 0.7 0.15 11.6 0.2 2.2 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|240103508|ref|YP_002959817.1| - 0.0049 16.8 0.1 0.011 15.7 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase SbcCD_C PF13558.6 gi|240103508|ref|YP_002959817.1| - 0.0055 16.9 0.0 0.054 13.7 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|240103508|ref|YP_002959817.1| - 0.0063 16.7 0.4 0.14 12.3 0.3 2.4 2 1 1 3 3 2 1 AAA domain AAA_24 PF13479.6 gi|240103508|ref|YP_002959817.1| - 0.0064 16.2 0.0 0.025 14.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|240103508|ref|YP_002959817.1| - 0.011 14.8 0.1 0.021 13.9 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.6 gi|240103508|ref|YP_002959817.1| - 0.017 15.2 0.1 0.26 11.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|240103508|ref|YP_002959817.1| - 0.02 14.7 0.0 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_13 PF13166.6 gi|240103508|ref|YP_002959817.1| - 0.021 13.5 0.0 4.6 5.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain Terminase_1 PF03354.15 gi|240103508|ref|YP_002959817.1| - 0.027 13.0 0.0 0.038 12.5 0.0 1.1 1 0 0 1 1 1 0 Phage Terminase cobW PF02492.19 gi|240103508|ref|YP_002959817.1| - 0.036 13.7 1.2 0.053 13.1 0.6 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.9 gi|240103508|ref|YP_002959817.1| - 0.042 12.6 1.7 0.05 12.4 0.7 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.12 gi|240103508|ref|YP_002959817.1| - 0.043 13.7 0.2 0.097 12.6 0.2 1.6 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|240103508|ref|YP_002959817.1| - 0.077 12.4 0.4 0.55 9.6 0.1 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|240103508|ref|YP_002959817.1| - 0.092 12.6 1.8 0.61 10.0 0.3 2.2 2 0 0 2 2 2 0 NTPase MobB PF03205.14 gi|240103508|ref|YP_002959817.1| - 0.093 12.6 0.4 0.22 11.4 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|240103508|ref|YP_002959817.1| - 0.11 12.8 0.8 0.26 11.6 0.3 1.7 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|240103508|ref|YP_002959817.1| - 0.12 11.9 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|240103508|ref|YP_002959817.1| - 0.13 12.1 0.6 0.47 10.2 0.3 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein RecA PF00154.21 gi|240103508|ref|YP_002959817.1| - 0.13 11.7 0.1 0.27 10.7 0.1 1.5 1 0 0 1 1 1 0 recA bacterial DNA recombination protein DEAD PF00270.29 gi|240103508|ref|YP_002959817.1| - 0.13 12.0 0.8 2.2 8.0 0.8 2.2 1 1 0 1 1 1 0 DEAD/DEAH box helicase NB-ARC PF00931.22 gi|240103508|ref|YP_002959817.1| - 0.14 11.3 1.2 0.88 8.7 1.1 2.1 1 1 0 1 1 1 0 NB-ARC domain TsaE PF02367.17 gi|240103508|ref|YP_002959817.1| - 0.15 12.1 0.1 0.26 11.3 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|240103508|ref|YP_002959817.1| - 0.17 11.3 0.2 0.49 9.8 0.1 1.7 2 0 0 2 2 2 0 PhoH-like protein PEPCK_ATP PF01293.20 gi|240103508|ref|YP_002959817.1| - 0.29 9.8 0.8 0.4 9.3 0.8 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_28 PF13521.6 gi|240103508|ref|YP_002959817.1| - 0.42 10.8 2.0 0.76 10.0 0.7 2.0 2 1 1 3 3 2 0 AAA domain Methyltr_RsmB-F PF01189.17 gi|240103511|ref|YP_002959820.1| - 1.8e-49 168.1 0.0 2.6e-49 167.6 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F NusB PF01029.18 gi|240103511|ref|YP_002959820.1| - 1.2e-19 70.9 0.6 2.2e-19 70.0 0.2 1.6 2 0 0 2 2 1 1 NusB family Methyltransf_31 PF13847.6 gi|240103511|ref|YP_002959820.1| - 3.8e-13 49.5 0.0 2.7e-12 46.7 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|240103511|ref|YP_002959820.1| - 1.1e-08 35.0 0.0 2.7e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|240103511|ref|YP_002959820.1| - 8.7e-08 31.8 0.0 4.2e-07 29.5 0.0 2.0 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|240103511|ref|YP_002959820.1| - 1.7e-07 31.9 0.1 2.6e-06 28.1 0.0 2.9 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|240103511|ref|YP_002959820.1| - 7.8e-06 25.5 0.0 0.00045 19.8 0.0 2.9 2 1 0 2 2 2 1 Methyltransferase small domain FtsJ PF01728.19 gi|240103511|ref|YP_002959820.1| - 0.00019 21.6 0.0 0.00037 20.7 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltr_RsmF_N PF17125.5 gi|240103511|ref|YP_002959820.1| - 0.0033 17.9 0.0 0.0096 16.4 0.0 1.8 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Met_10 PF02475.16 gi|240103511|ref|YP_002959820.1| - 0.018 14.8 0.0 0.042 13.6 0.0 1.6 1 1 0 1 1 1 0 Met-10+ like-protein Fibrillarin PF01269.17 gi|240103511|ref|YP_002959820.1| - 0.025 13.7 0.0 0.054 12.6 0.0 1.5 1 0 0 1 1 1 0 Fibrillarin Methyltransf_12 PF08242.12 gi|240103511|ref|YP_002959820.1| - 0.037 14.8 0.0 0.56 11.0 0.0 2.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|240103511|ref|YP_002959820.1| - 0.11 12.0 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Putative methyltransferase DNA_pol_B PF00136.21 gi|240103512|ref|YP_002959821.1| - 1.5e-82 277.8 0.0 2.4e-82 277.1 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|240103512|ref|YP_002959821.1| - 6.4e-50 170.2 0.4 1.7e-34 119.5 0.0 2.7 1 1 1 2 2 2 2 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|240103512|ref|YP_002959821.1| - 1.2e-09 38.1 0.0 2.4e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|240103512|ref|YP_002959821.1| - 8.2e-09 35.7 0.2 3e-08 33.8 0.1 2.1 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_2 PF03175.13 gi|240103512|ref|YP_002959821.1| - 2.3e-05 23.5 0.0 8.8e-05 21.5 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase type B, organellar and viral LamB_YcsF PF03746.16 gi|240103512|ref|YP_002959821.1| - 0.049 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 LamB/YcsF family HAD_2 PF13419.6 gi|240103513|ref|YP_002959822.1| - 1.7e-14 54.3 0.0 5.1e-14 52.7 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240103513|ref|YP_002959822.1| - 3.8e-10 40.4 0.0 5.9e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|240103513|ref|YP_002959822.1| - 2.9e-06 27.3 0.0 5.1e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like DUF3666 PF12408.8 gi|240103513|ref|YP_002959822.1| - 0.045 13.0 0.1 0.11 11.8 0.1 1.6 1 0 0 1 1 1 0 Ribose-5-phosphate isomerase HAD PF12710.7 gi|240103513|ref|YP_002959822.1| - 0.11 12.9 0.1 0.28 11.5 0.1 1.5 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase DUF3109 PF11307.8 gi|240103513|ref|YP_002959822.1| - 0.24 11.2 0.0 0.38 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3109) tRNA_anti-codon PF01336.25 gi|240103517|ref|YP_002959826.1| - 1.6e-10 40.8 0.2 3.5e-10 39.7 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|240103517|ref|YP_002959826.1| - 4.5e-10 39.7 1.9 4.5e-10 39.7 1.9 2.1 2 0 0 2 2 2 1 S1 RNA binding domain DnaJ_CXXCXGXG PF00684.19 gi|240103517|ref|YP_002959826.1| - 2.6e-08 34.1 13.4 0.00044 20.6 1.1 2.6 2 0 0 2 2 2 2 DnaJ central domain DHH PF01368.20 gi|240103517|ref|YP_002959826.1| - 5.3e-05 23.4 0.1 0.0002 21.5 0.0 1.9 2 0 0 2 2 2 1 DHH family TackOD1 PF18551.1 gi|240103517|ref|YP_002959826.1| - 0.002 17.8 3.6 0.0044 16.7 0.2 2.2 2 0 0 2 2 2 1 Thaumarchaeal output domain 1 RMI2 PF16100.5 gi|240103517|ref|YP_002959826.1| - 0.0058 16.4 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 Anti-TRAP PF15777.5 gi|240103517|ref|YP_002959826.1| - 0.0066 16.4 1.8 0.0066 16.4 1.8 3.7 2 1 1 3 3 3 2 Tryptophan RNA-binding attenuator protein inhibitory protein tRNA_anti_2 PF13742.6 gi|240103517|ref|YP_002959826.1| - 0.11 12.7 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain DUF1104 PF06518.11 gi|240103517|ref|YP_002959826.1| - 0.76 10.2 2.7 30 5.1 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1104) DUF2391 PF09622.10 gi|240103518|ref|YP_002959827.1| - 1e-09 38.1 0.6 1.2e-09 37.9 0.6 1.0 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF1211 PF06736.11 gi|240103518|ref|YP_002959827.1| - 0.032 14.7 2.5 0.36 11.3 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1211) TFA2_Winged_2 PF18121.1 gi|240103518|ref|YP_002959827.1| - 0.17 11.6 0.6 0.3 10.8 0.6 1.3 1 0 0 1 1 1 0 TFA2 Winged helix domain 2 DUF1774 PF08611.10 gi|240103518|ref|YP_002959827.1| - 0.44 10.9 4.1 9.3 6.6 0.1 2.3 2 0 0 2 2 2 0 Fungal protein of unknown function (DUF1774) DUF3226 PF11536.8 gi|240103519|ref|YP_002959828.1| - 1.2e-81 273.9 0.0 1.5e-81 273.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3226) DUF4143 PF13635.6 gi|240103521|ref|YP_002959830.1| - 2.7e-10 40.4 0.0 4.7e-10 39.7 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) GARS_C PF02843.16 gi|240103521|ref|YP_002959830.1| - 0.14 12.5 0.0 0.26 11.6 0.0 1.5 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, C domain ADP_PFK_GK PF04587.15 gi|240103522|ref|YP_002959831.1| - 4.6e-107 358.2 0.0 5.3e-107 358.0 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region Rib PF08428.10 gi|240103523|ref|YP_002959832.1| - 0.013 15.5 0.2 0.047 13.7 0.2 2.0 1 0 0 1 1 1 0 Rib/alpha-like repeat NEAT PF05031.12 gi|240103523|ref|YP_002959832.1| - 0.038 14.6 0.8 0.44 11.2 0.1 2.7 2 1 0 2 2 2 0 Iron Transport-associated domain PapJ PF14855.6 gi|240103523|ref|YP_002959832.1| - 0.21 11.3 0.0 0.33 10.6 0.0 1.2 1 0 0 1 1 1 0 Pilus-assembly fibrillin subunit, chaperone Big_7 PF17957.1 gi|240103523|ref|YP_002959832.1| - 0.33 11.7 4.2 0.36 11.6 1.6 2.5 2 0 0 2 2 2 0 Bacterial Ig domain ETRAMP PF09716.10 gi|240103526|ref|YP_002959835.1| - 0.048 13.7 0.1 0.065 13.3 0.1 1.3 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) V_cholerae_RfbT PF05575.11 gi|240103526|ref|YP_002959835.1| - 0.059 12.6 0.0 2.4 7.3 0.0 2.3 2 0 0 2 2 2 0 Vibrio cholerae RfbT protein DUF3687 PF12459.8 gi|240103526|ref|YP_002959835.1| - 5 6.7 7.6 4.9 6.8 0.6 2.5 2 0 0 2 2 2 0 D-Ala-teichoic acid biosynthesis protein YjhX_toxin PF09857.9 gi|240103535|ref|YP_002959844.1| - 0.01 15.7 0.0 0.03 14.3 0.0 1.8 2 0 0 2 2 2 0 Putative toxin of bacterial toxin-antitoxin pair DctQ PF04290.12 gi|240103535|ref|YP_002959844.1| - 0.1 12.5 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component Amdase PF17645.1 gi|240103536|ref|YP_002959845.1| - 1.4e-35 122.9 0.0 1.7e-35 122.7 0.0 1.0 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|240103536|ref|YP_002959845.1| - 2.2e-11 44.0 0.0 2.8e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Ndc1_Nup PF09531.10 gi|240103537|ref|YP_002959846.1| - 0.051 12.3 1.0 0.057 12.1 1.0 1.0 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup LapA_dom PF06305.11 gi|240103537|ref|YP_002959846.1| - 0.45 10.4 3.8 0.61 9.9 3.1 1.6 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain ThiI PF02568.14 gi|240103538|ref|YP_002959847.1| - 2.5e-65 219.8 0.0 4.6e-65 218.9 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|240103538|ref|YP_002959847.1| - 1.9e-27 96.1 6.9 1.9e-27 96.1 6.9 1.9 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|240103538|ref|YP_002959847.1| - 2.5e-08 33.7 0.0 3.4e-06 26.7 0.0 2.4 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|240103538|ref|YP_002959847.1| - 2.1e-06 27.9 0.0 4.5e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|240103538|ref|YP_002959847.1| - 2.4e-05 23.3 0.0 7.8e-05 21.6 0.0 1.7 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|240103538|ref|YP_002959847.1| - 0.025 14.3 0.0 0.21 11.3 0.0 2.2 1 1 0 1 1 1 0 PP-loop family SecD-TM1 PF13721.6 gi|240103538|ref|YP_002959847.1| - 0.12 12.9 0.0 0.26 11.7 0.0 1.6 1 0 0 1 1 1 0 SecD export protein N-terminal TM region DHC_N2 PF08393.13 gi|240103538|ref|YP_002959847.1| - 0.2 10.7 0.5 0.54 9.3 0.1 1.8 2 0 0 2 2 2 0 Dynein heavy chain, N-terminal region 2 DUF998 PF06197.13 gi|240103540|ref|YP_002959849.1| - 5.8e-10 39.1 16.3 8e-10 38.6 16.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) ThiI PF02568.14 gi|240103541|ref|YP_002959850.1| - 1e-58 198.2 0.0 1.2e-58 198.0 0.0 1.0 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|240103541|ref|YP_002959850.1| - 3.9e-08 33.0 0.0 0.0017 17.9 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|240103541|ref|YP_002959850.1| - 0.00036 19.4 0.0 0.0024 16.7 0.0 2.0 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|240103541|ref|YP_002959850.1| - 0.014 15.4 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|240103541|ref|YP_002959850.1| - 0.095 12.5 0.0 1.5 8.5 0.0 2.0 2 0 0 2 2 2 0 PP-loop family DUF835 PF05763.12 gi|240103542|ref|YP_002959851.1| - 1.1e-24 86.7 0.0 1.8e-24 86.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) GlpM PF06942.12 gi|240103542|ref|YP_002959851.1| - 0.0054 17.1 1.2 0.0054 17.1 1.2 2.7 2 1 1 3 3 3 1 GlpM protein 2-oxogl_dehyd_N PF16078.5 gi|240103542|ref|YP_002959851.1| - 0.17 11.5 0.1 0.78 9.4 0.0 2.1 3 0 0 3 3 3 0 2-oxoglutarate dehydrogenase N-terminus PQQ_3 PF13570.6 gi|240103543|ref|YP_002959852.1| - 3.3e-06 27.4 14.9 4.3 8.0 0.6 6.6 7 0 0 7 7 7 4 PQQ-like domain WD40 PF00400.32 gi|240103543|ref|YP_002959852.1| - 9.4e-06 26.3 0.1 1.5 9.9 0.1 4.3 3 1 1 4 4 4 2 WD domain, G-beta repeat PQQ PF01011.21 gi|240103543|ref|YP_002959852.1| - 0.00065 19.5 14.2 5.2 7.2 0.1 6.9 7 1 0 7 7 7 3 PQQ enzyme repeat BBS2_Mid PF14783.6 gi|240103543|ref|YP_002959852.1| - 0.0013 18.7 0.6 0.026 14.5 0.0 3.0 2 1 2 4 4 4 1 Ciliary BBSome complex subunit 2, middle region ANAPC4_WD40 PF12894.7 gi|240103543|ref|YP_002959852.1| - 0.0047 17.2 0.2 11 6.4 0.0 4.3 4 1 1 5 5 5 1 Anaphase-promoting complex subunit 4 WD40 domain CHU_C PF13585.6 gi|240103543|ref|YP_002959852.1| - 0.016 15.2 1.2 0.52 10.4 0.2 2.5 2 0 0 2 2 2 0 C-terminal domain of CHU protein family ABC_tran PF00005.27 gi|240103544|ref|YP_002959853.1| - 2.7e-28 99.2 0.0 4.1e-28 98.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103544|ref|YP_002959853.1| - 4.9e-14 52.8 0.3 4.6e-09 36.5 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|240103544|ref|YP_002959853.1| - 0.00018 21.5 0.0 0.0003 20.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain DUF4162 PF13732.6 gi|240103544|ref|YP_002959853.1| - 0.00073 20.2 0.2 0.0034 18.1 0.2 2.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|240103544|ref|YP_002959853.1| - 0.0024 17.7 0.1 1.7 8.2 0.0 2.7 2 1 1 3 3 3 2 AAA ATPase domain SMC_N PF02463.19 gi|240103544|ref|YP_002959853.1| - 0.0024 17.3 0.0 0.38 10.2 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|240103544|ref|YP_002959853.1| - 0.0034 17.9 2.0 0.0064 17.0 2.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|240103544|ref|YP_002959853.1| - 0.0034 17.6 0.1 0.012 15.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|240103544|ref|YP_002959853.1| - 0.0057 16.3 0.0 0.21 11.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|240103544|ref|YP_002959853.1| - 0.0063 16.9 0.1 0.024 15.0 0.1 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|240103544|ref|YP_002959853.1| - 0.0064 16.9 0.8 0.046 14.1 0.8 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|240103544|ref|YP_002959853.1| - 0.014 14.1 0.0 0.32 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|240103544|ref|YP_002959853.1| - 0.021 14.6 0.1 0.04 13.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|240103544|ref|YP_002959853.1| - 0.027 14.2 0.1 0.049 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|240103544|ref|YP_002959853.1| - 0.029 14.3 0.7 0.07 13.0 0.5 2.0 2 1 0 2 2 2 0 NTPase SRP54 PF00448.22 gi|240103544|ref|YP_002959853.1| - 0.079 12.6 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|240103544|ref|YP_002959853.1| - 0.11 12.9 0.4 3 8.2 0.0 2.3 2 1 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|240103544|ref|YP_002959853.1| - 0.13 12.3 0.1 0.32 11.0 0.0 1.7 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|240103544|ref|YP_002959853.1| - 0.13 12.0 0.0 0.3 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|240103544|ref|YP_002959853.1| - 0.16 12.2 0.1 0.65 10.2 0.1 2.1 3 0 0 3 3 3 0 AAA domain AAA_7 PF12775.7 gi|240103544|ref|YP_002959853.1| - 0.2 11.2 0.1 0.56 9.7 0.1 1.8 1 1 0 1 1 1 0 P-loop containing dynein motor region ABC2_membrane PF01061.24 gi|240103545|ref|YP_002959854.1| - 1.1e-23 83.8 26.0 1.1e-23 83.8 26.0 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|240103545|ref|YP_002959854.1| - 3.6e-13 49.4 29.6 5e-13 48.9 29.5 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein 12TM_1 PF09847.9 gi|240103545|ref|YP_002959854.1| - 2.8e-08 33.3 15.6 3.2e-08 33.1 15.6 1.2 1 0 0 1 1 1 1 Membrane protein of 12 TMs ABC2_membrane_2 PF12679.7 gi|240103545|ref|YP_002959854.1| - 0.00018 20.9 21.9 0.00039 19.8 19.2 2.2 1 1 1 2 2 2 1 ABC-2 family transporter protein CcmB PF03379.13 gi|240103545|ref|YP_002959854.1| - 0.0055 16.2 10.1 0.0055 16.2 10.1 1.6 1 1 0 1 1 1 1 CcmB protein ABC2_membrane_4 PF12730.7 gi|240103545|ref|YP_002959854.1| - 0.029 14.3 20.2 0.037 14.0 13.6 3.1 1 1 2 3 3 3 0 ABC-2 family transporter protein DUF4536 PF15055.6 gi|240103545|ref|YP_002959854.1| - 0.066 13.5 2.6 0.09 13.0 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4536) Syndecan PF01034.20 gi|240103545|ref|YP_002959854.1| - 1.3 9.0 6.9 0.18 11.7 2.0 2.0 2 0 0 2 2 2 0 Syndecan domain TMEM40 PF15817.5 gi|240103545|ref|YP_002959854.1| - 4.2 7.2 5.4 1 9.2 0.4 2.1 1 1 1 2 2 2 0 Transmembrane protein 40 family Ribosomal_S27e PF01667.17 gi|240103546|ref|YP_002959855.1| - 3.4e-27 93.9 0.9 3.7e-27 93.8 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|240103546|ref|YP_002959855.1| - 0.0022 17.5 0.4 0.0024 17.4 0.4 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.19 gi|240103546|ref|YP_002959855.1| - 0.0085 16.1 0.1 0.0099 15.9 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_6 PF14599.6 gi|240103546|ref|YP_002959855.1| - 0.011 15.8 0.1 0.014 15.4 0.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon zinc_ribbon_4 PF13717.6 gi|240103546|ref|YP_002959855.1| - 0.029 14.3 0.6 5.6 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.15 gi|240103546|ref|YP_002959855.1| - 0.056 13.5 0.1 1.4 9.0 0.0 2.1 2 0 0 2 2 2 0 BED zinc finger zf-CCHC_6 PF15288.6 gi|240103546|ref|YP_002959855.1| - 0.067 13.0 2.2 1.9 8.4 0.0 2.2 2 0 0 2 2 2 0 Zinc knuckle zf-RanBP PF00641.18 gi|240103546|ref|YP_002959855.1| - 0.077 12.3 1.3 4 6.9 0.1 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others ADD_DNMT3 PF17980.1 gi|240103546|ref|YP_002959855.1| - 0.084 12.9 1.7 0.63 10.1 1.7 2.0 1 1 0 1 1 1 0 Cysteine rich ADD domain in DNMT3 Ribosomal_L44 PF00935.19 gi|240103547|ref|YP_002959856.1| - 3.5e-26 91.5 6.7 5.3e-26 90.9 6.7 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|240103547|ref|YP_002959856.1| - 0.00095 19.6 7.3 0.0025 18.2 4.4 2.3 2 0 0 2 2 2 1 Ribosomal protein L33 Nudix_N_2 PF14803.6 gi|240103547|ref|YP_002959856.1| - 0.0093 15.9 1.4 3.8 7.5 0.1 2.3 2 0 0 2 2 2 2 Nudix N-terminal NOB1_Zn_bind PF08772.11 gi|240103547|ref|YP_002959856.1| - 0.012 15.7 1.9 0.041 14.0 0.2 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Elf1 PF05129.13 gi|240103547|ref|YP_002959856.1| - 0.018 15.1 0.9 0.54 10.3 0.1 2.2 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like HypA PF01155.19 gi|240103547|ref|YP_002959856.1| - 0.031 14.3 0.4 0.18 11.9 0.4 1.9 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ISL3 PF14690.6 gi|240103547|ref|YP_002959856.1| - 0.04 14.6 5.2 3.3 8.5 1.6 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 gi|240103547|ref|YP_002959856.1| - 0.093 12.7 2.2 1.7 8.7 0.4 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2_6 PF13912.6 gi|240103547|ref|YP_002959856.1| - 0.24 11.4 3.8 0.85 9.7 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|240103547|ref|YP_002959856.1| - 0.45 11.1 5.0 9.7 6.9 0.3 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|240103547|ref|YP_002959856.1| - 1.4 9.5 8.1 4.7 7.8 0.2 2.7 2 1 0 2 2 2 0 Zinc-finger double domain Rubrerythrin PF02915.17 gi|240103548|ref|YP_002959857.1| - 0.01 16.3 4.6 0.028 14.8 0.3 2.3 2 0 0 2 2 2 1 Rubrerythrin WSN PF02206.18 gi|240103548|ref|YP_002959857.1| - 0.092 12.7 0.1 0.63 10.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF2383 PF09537.10 gi|240103548|ref|YP_002959857.1| - 0.11 12.9 4.0 4.9 7.5 0.8 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) DUF3090 PF11290.8 gi|240103548|ref|YP_002959857.1| - 0.11 12.3 0.6 0.19 11.5 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3090) Peptidase_C65 PF10275.9 gi|240103548|ref|YP_002959857.1| - 0.16 11.4 1.0 0.46 9.9 0.1 1.9 2 0 0 2 2 2 0 Peptidase C65 Otubain DUF29 PF01724.16 gi|240103548|ref|YP_002959857.1| - 0.68 10.2 4.0 1.1 9.5 0.0 2.6 2 1 0 3 3 3 0 Domain of unknown function DUF29 Trm112p PF03966.16 gi|240103549|ref|YP_002959858.1| - 7e-05 23.3 0.2 0.00015 22.3 0.2 1.5 1 0 0 1 1 1 1 Trm112p-like protein zf-ribbon_3 PF13248.6 gi|240103549|ref|YP_002959858.1| - 0.00037 19.8 1.4 0.54 9.8 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-Di19 PF05605.12 gi|240103549|ref|YP_002959858.1| - 0.00079 19.7 1.2 0.6 10.5 0.7 2.2 2 0 0 2 2 2 2 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.6 gi|240103549|ref|YP_002959858.1| - 0.0034 18.1 2.1 0.8 10.7 0.7 2.4 2 0 0 2 2 2 1 C2H2-type zinc finger zf-NADH-PPase PF09297.11 gi|240103549|ref|YP_002959858.1| - 0.0036 16.9 1.0 0.11 12.1 0.1 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain Rad50_zn_hook PF04423.14 gi|240103549|ref|YP_002959858.1| - 0.0071 16.2 6.7 0.046 13.6 0.7 2.7 1 1 1 2 2 2 1 Rad50 zinc hook motif MqsA_antitoxin PF15731.5 gi|240103549|ref|YP_002959858.1| - 0.0079 16.3 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA zf-C2H2 PF00096.26 gi|240103549|ref|YP_002959858.1| - 0.008 16.6 2.4 0.99 10.0 0.8 2.3 2 0 0 2 2 2 1 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.6 gi|240103549|ref|YP_002959858.1| - 0.0092 15.7 6.3 0.35 10.6 0.6 2.6 3 0 0 3 3 3 2 zinc-ribbon domain YacG PF03884.14 gi|240103549|ref|YP_002959858.1| - 0.0097 15.6 0.5 1.1 9.0 0.1 2.4 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG Zn_ribbon_SprT PF17283.2 gi|240103549|ref|YP_002959858.1| - 0.03 14.2 1.7 0.49 10.3 0.1 2.5 3 0 0 3 3 2 0 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|240103549|ref|YP_002959858.1| - 0.031 14.3 0.5 0.45 10.5 0.0 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Ogr_Delta PF04606.12 gi|240103549|ref|YP_002959858.1| - 0.043 13.8 2.8 1.5 8.8 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ACC PF17848.1 gi|240103549|ref|YP_002959858.1| - 0.054 13.6 2.1 0.64 10.1 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Lipoprotein_20 PF13942.6 gi|240103549|ref|YP_002959858.1| - 0.063 13.2 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 YfhG lipoprotein Mu-like_Com PF10122.9 gi|240103549|ref|YP_002959858.1| - 0.068 12.6 2.3 0.77 9.3 0.1 2.5 2 0 0 2 2 2 0 Mu-like prophage protein Com Cys_rich_CPXG PF14255.6 gi|240103549|ref|YP_002959858.1| - 0.069 13.1 3.3 1.1 9.2 0.7 2.5 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-IS66 PF13005.7 gi|240103549|ref|YP_002959858.1| - 0.07 13.5 0.4 14 6.1 0.0 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.12 gi|240103549|ref|YP_002959858.1| - 0.072 12.6 0.4 2.2 7.9 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.19 gi|240103549|ref|YP_002959858.1| - 0.087 12.6 2.9 6.2 6.7 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-DNA_Pol PF08996.10 gi|240103549|ref|YP_002959858.1| - 0.091 12.5 0.0 0.13 12.0 0.0 1.5 2 0 0 2 2 1 0 DNA Polymerase alpha zinc finger Prok-RING_1 PF14446.6 gi|240103549|ref|YP_002959858.1| - 0.1 12.6 0.5 15 5.6 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.12 gi|240103549|ref|YP_002959858.1| - 0.13 12.2 4.6 4.4 7.3 0.3 2.8 3 0 0 3 3 3 0 PhnA Zinc-Ribbon YhfH PF14149.6 gi|240103549|ref|YP_002959858.1| - 0.14 12.1 1.7 5.1 7.2 0.2 2.4 2 0 0 2 2 2 0 YhfH-like protein Zn-ribbon_8 PF09723.10 gi|240103549|ref|YP_002959858.1| - 0.14 12.3 4.1 4.1 7.6 2.1 2.5 2 1 0 2 2 2 0 Zinc ribbon domain CpXC PF14353.6 gi|240103549|ref|YP_002959858.1| - 0.22 11.6 1.7 0.53 10.4 1.7 1.9 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_10 PF10058.9 gi|240103549|ref|YP_002959858.1| - 0.47 10.2 0.1 0.47 10.2 0.1 1.9 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_9 PF14369.6 gi|240103549|ref|YP_002959858.1| - 0.47 10.7 2.7 1.5 9.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon Lar_restr_allev PF14354.6 gi|240103549|ref|YP_002959858.1| - 0.56 10.6 2.9 8.8 6.8 0.1 2.7 3 0 0 3 3 3 0 Restriction alleviation protein Lar zf-C2HC_2 PF13913.6 gi|240103549|ref|YP_002959858.1| - 0.65 10.0 6.4 2.2 8.3 1.3 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-Mss51 PF13824.6 gi|240103549|ref|YP_002959858.1| - 1 9.5 3.3 11 6.2 3.3 2.2 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-H2C2_2 PF13465.6 gi|240103549|ref|YP_002959858.1| - 1.2 9.7 6.8 3.4 8.3 0.8 2.3 2 0 0 2 2 2 0 Zinc-finger double domain DUF2256 PF10013.9 gi|240103549|ref|YP_002959858.1| - 1.4 9.1 4.7 5.3 7.2 0.1 2.7 3 0 0 3 3 2 0 Uncharacterized protein conserved in bacteria (DUF2256) UPF0547 PF10571.9 gi|240103549|ref|YP_002959858.1| - 1.5 8.9 6.9 5.5 7.2 1.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DHH PF01368.20 gi|240103550|ref|YP_002959859.1| - 4.1e-13 49.4 0.0 6.4e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|240103550|ref|YP_002959859.1| - 8.3e-13 48.9 1.7 5.2e-12 46.4 2.3 2.0 2 0 0 2 2 2 1 DHHA1 domain DUF3194 PF11419.8 gi|240103551|ref|YP_002959860.1| - 3.5e-26 91.4 4.8 4.1e-26 91.1 4.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Prefoldin_2 PF01920.20 gi|240103552|ref|YP_002959861.1| - 7.2e-25 87.0 21.4 8.2e-25 86.8 21.4 1.0 1 0 0 1 1 1 1 Prefoldin subunit FPP PF05911.11 gi|240103552|ref|YP_002959861.1| - 0.00017 19.9 13.7 0.00019 19.8 13.7 1.0 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil ALIX_LYPXL_bnd PF13949.6 gi|240103552|ref|YP_002959861.1| - 0.0011 18.3 9.0 0.0014 18.0 9.0 1.0 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV FUSC PF04632.12 gi|240103552|ref|YP_002959861.1| - 0.0025 16.4 1.3 0.0027 16.3 1.3 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein family XhlA PF10779.9 gi|240103552|ref|YP_002959861.1| - 0.0041 17.3 11.0 0.032 14.4 6.1 2.2 2 0 0 2 2 2 1 Haemolysin XhlA CdvA PF18822.1 gi|240103552|ref|YP_002959861.1| - 0.0063 16.3 15.9 0.022 14.6 1.4 2.2 1 1 1 2 2 2 1 CdvA-like coiled-coil domain PspA_IM30 PF04012.12 gi|240103552|ref|YP_002959861.1| - 0.011 15.3 14.1 0.018 14.6 14.1 1.3 1 0 0 1 1 1 0 PspA/IM30 family DUF3416 PF11896.8 gi|240103552|ref|YP_002959861.1| - 0.012 16.0 2.9 0.017 15.5 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3416) FTA4 PF13093.6 gi|240103552|ref|YP_002959861.1| - 0.017 15.0 9.0 0.021 14.7 9.0 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 CENP-F_leu_zip PF10473.9 gi|240103552|ref|YP_002959861.1| - 0.019 15.0 17.2 0.43 10.6 6.1 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.8 gi|240103552|ref|YP_002959861.1| - 0.02 14.2 14.8 0.12 11.6 2.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) TPR_MLP1_2 PF07926.12 gi|240103552|ref|YP_002959861.1| - 0.02 14.9 17.6 0.24 11.5 6.1 2.0 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein DHR10 PF18595.1 gi|240103552|ref|YP_002959861.1| - 0.022 14.8 17.0 0.13 12.3 6.0 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain SRP54 PF00448.22 gi|240103552|ref|YP_002959861.1| - 0.022 14.4 4.9 0.026 14.2 4.9 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain V_ATPase_I PF01496.19 gi|240103552|ref|YP_002959861.1| - 0.026 12.5 5.3 0.034 12.1 5.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family NPV_P10 PF05531.12 gi|240103552|ref|YP_002959861.1| - 0.029 14.8 10.1 0.036 14.5 1.1 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.11 gi|240103552|ref|YP_002959861.1| - 0.029 14.8 4.1 0.029 14.8 4.1 2.9 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF3322 PF11795.8 gi|240103552|ref|YP_002959861.1| - 0.031 14.3 2.7 0.039 14.0 2.7 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) PilJ PF13675.6 gi|240103552|ref|YP_002959861.1| - 0.034 14.2 6.8 0.13 12.3 0.3 2.1 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4559 PF15112.6 gi|240103552|ref|YP_002959861.1| - 0.035 13.8 6.4 0.046 13.4 6.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) GIT_CC PF16559.5 gi|240103552|ref|YP_002959861.1| - 0.049 13.5 2.6 0.049 13.5 2.6 2.3 2 1 0 2 2 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor Vps52 PF04129.12 gi|240103552|ref|YP_002959861.1| - 0.051 12.3 5.8 0.057 12.2 5.8 1.1 1 0 0 1 1 1 0 Vps52 / Sac2 family CLZ PF16526.5 gi|240103552|ref|YP_002959861.1| - 0.065 13.6 15.9 0.14 12.6 4.7 2.2 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF3584 PF12128.8 gi|240103552|ref|YP_002959861.1| - 0.066 10.7 9.8 0.084 10.4 9.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ADIP PF11559.8 gi|240103552|ref|YP_002959861.1| - 0.079 13.0 15.9 0.074 13.1 5.8 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding FapA PF03961.13 gi|240103552|ref|YP_002959861.1| - 0.084 11.5 10.5 0.11 11.1 10.5 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Spc7 PF08317.11 gi|240103552|ref|YP_002959861.1| - 0.16 10.8 20.4 1.8 7.4 20.4 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein BRCC36_C PF18110.1 gi|240103552|ref|YP_002959861.1| - 0.17 12.0 8.3 0.75 10.0 0.5 2.3 2 1 0 2 2 2 0 BRCC36 C-terminal helical domain Filament PF00038.21 gi|240103552|ref|YP_002959861.1| - 0.2 11.2 14.9 0.7 9.4 4.4 2.0 1 1 1 2 2 2 0 Intermediate filament protein BLOC1_2 PF10046.9 gi|240103552|ref|YP_002959861.1| - 0.22 11.9 14.8 17 5.8 14.8 2.1 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4404 PF14357.6 gi|240103552|ref|YP_002959861.1| - 0.22 12.2 11.3 0.9 10.2 2.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) Seryl_tRNA_N PF02403.22 gi|240103552|ref|YP_002959861.1| - 0.24 11.7 18.7 1.1e+02 3.0 18.7 2.1 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain TolA_bind_tri PF16331.5 gi|240103552|ref|YP_002959861.1| - 0.25 11.5 13.1 0.29 11.3 0.2 2.1 2 0 0 2 2 2 0 TolA binding protein trimerisation Rota_NSP3 PF01665.16 gi|240103552|ref|YP_002959861.1| - 0.29 10.2 4.6 0.23 10.6 3.5 1.4 1 1 0 1 1 1 0 Rotavirus non-structural protein NSP3 YabA PF06156.13 gi|240103552|ref|YP_002959861.1| - 0.32 11.7 15.8 0.38 11.4 3.6 2.1 1 1 1 2 2 2 0 Initiation control protein YabA Prefoldin PF02996.17 gi|240103552|ref|YP_002959861.1| - 0.35 10.8 18.8 0.93 9.4 6.6 2.3 1 1 1 2 2 2 0 Prefoldin subunit DUF4988 PF16378.5 gi|240103552|ref|YP_002959861.1| - 0.35 10.5 6.5 0.13 11.9 1.1 2.0 2 0 0 2 2 2 0 Domain of unknown function PI3K_P85_iSH2 PF16454.5 gi|240103552|ref|YP_002959861.1| - 0.39 10.3 18.3 0.32 10.6 5.3 2.0 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain AAA_11 PF13086.6 gi|240103552|ref|YP_002959861.1| - 0.41 10.4 5.9 0.5 10.1 5.9 1.0 1 0 0 1 1 1 0 AAA domain FAA_hydro_N_2 PF18288.1 gi|240103552|ref|YP_002959861.1| - 0.42 11.1 3.6 5.3 7.5 0.1 2.2 2 0 0 2 2 2 0 Fumarylacetoacetase N-terminal domain 2 Exonuc_VII_L PF02601.15 gi|240103552|ref|YP_002959861.1| - 0.48 9.9 8.0 0.56 9.7 8.0 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit SlyX PF04102.12 gi|240103552|ref|YP_002959861.1| - 0.5 11.0 12.5 0.25 12.0 1.2 2.3 2 0 0 2 2 2 0 SlyX APG6_N PF17675.1 gi|240103552|ref|YP_002959861.1| - 0.51 10.9 21.9 2.2 8.8 9.4 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region UPF0184 PF03670.13 gi|240103552|ref|YP_002959861.1| - 0.55 10.7 3.3 1.6 9.1 0.2 2.3 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0184) DUF2408 PF10303.9 gi|240103552|ref|YP_002959861.1| - 0.56 10.8 12.3 1.4 9.5 12.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DASH_Dam1 PF08653.10 gi|240103552|ref|YP_002959861.1| - 0.61 9.9 3.2 0.66 9.8 0.2 2.3 2 1 0 2 2 2 0 DASH complex subunit Dam1 Cortex-I_coil PF09304.10 gi|240103552|ref|YP_002959861.1| - 0.69 10.2 15.7 2.1 8.6 4.3 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil Flagellin_N PF00669.20 gi|240103552|ref|YP_002959861.1| - 0.73 9.9 5.6 1.2 9.3 4.0 1.9 1 1 0 1 1 1 0 Bacterial flagellin N-terminal helical region Spc24 PF08286.11 gi|240103552|ref|YP_002959861.1| - 0.8 10.0 17.0 1.7 8.9 5.7 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 ZapB PF06005.12 gi|240103552|ref|YP_002959861.1| - 0.83 10.1 21.7 0.31 11.5 7.4 2.1 2 0 0 2 2 2 0 Cell division protein ZapB DUF1664 PF07889.12 gi|240103552|ref|YP_002959861.1| - 0.88 9.6 10.6 4.6 7.3 10.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|240103552|ref|YP_002959861.1| - 0.89 9.4 13.4 2.4 8.0 3.3 2.0 1 1 1 2 2 2 0 Sec34-like family DUF4763 PF15960.5 gi|240103552|ref|YP_002959861.1| - 0.94 8.7 11.8 1.8 7.8 0.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) Prominin PF05478.11 gi|240103552|ref|YP_002959861.1| - 1.1 7.2 10.9 2 6.2 10.9 1.4 1 1 0 1 1 1 0 Prominin Laminin_II PF06009.12 gi|240103552|ref|YP_002959861.1| - 1.2 9.2 14.1 13 5.8 14.1 2.0 1 1 0 1 1 1 0 Laminin Domain II ATG16 PF08614.11 gi|240103552|ref|YP_002959861.1| - 1.3 9.2 16.8 0.84 9.8 6.6 2.0 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) PEARLI-4 PF05278.12 gi|240103552|ref|YP_002959861.1| - 1.6 8.3 12.1 16 4.9 12.1 1.9 1 1 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) ThrE PF06738.12 gi|240103552|ref|YP_002959861.1| - 1.6 8.0 3.1 2.3 7.5 0.3 1.9 1 1 1 2 2 2 0 Putative threonine/serine exporter DUF4140 PF13600.6 gi|240103552|ref|YP_002959861.1| - 1.7 9.1 14.6 3.3 8.2 6.9 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Lipoprotein_20 PF13942.6 gi|240103552|ref|YP_002959861.1| - 1.8 8.4 10.5 2.6 7.9 1.2 2.1 2 0 0 2 2 2 0 YfhG lipoprotein Syntaxin-6_N PF09177.11 gi|240103552|ref|YP_002959861.1| - 2.1 8.9 11.3 14 6.3 11.3 2.0 1 1 0 1 1 1 0 Syntaxin 6, N-terminal zf-CpG_bind_C PF12269.8 gi|240103552|ref|YP_002959861.1| - 2.2 8.0 12.8 3.3 7.4 3.7 2.0 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain Allexi_40kDa PF05549.11 gi|240103552|ref|YP_002959861.1| - 2.7 7.4 6.7 8.1 5.9 6.7 1.7 1 1 0 1 1 1 0 Allexivirus 40kDa protein FliJ PF02050.16 gi|240103552|ref|YP_002959861.1| - 3 8.1 17.8 0.29 11.4 4.9 2.4 2 1 0 2 2 2 0 Flagellar FliJ protein YlqD PF11068.8 gi|240103552|ref|YP_002959861.1| - 3.3 8.1 20.7 0.62 10.4 4.8 2.1 1 1 1 2 2 2 0 YlqD protein OmpH PF03938.14 gi|240103552|ref|YP_002959861.1| - 3.3 8.0 20.5 5.1 7.4 20.5 1.3 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) SOAR PF16533.5 gi|240103552|ref|YP_002959861.1| - 3.4 7.7 12.7 12 5.9 12.7 1.9 1 1 0 1 1 1 0 STIM1 Orai1-activating region JIP_LZII PF16471.5 gi|240103552|ref|YP_002959861.1| - 3.4 7.9 16.3 0.23 11.7 6.0 2.2 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II Snapin_Pallidin PF14712.6 gi|240103552|ref|YP_002959861.1| - 3.5 8.1 18.7 0.71 10.3 3.4 2.2 1 1 1 2 2 2 0 Snapin/Pallidin Ead_Ea22 PF13935.6 gi|240103552|ref|YP_002959861.1| - 3.9 8.1 11.0 26 5.4 11.0 1.9 1 1 0 1 1 1 0 Ead/Ea22-like protein TMPIT PF07851.13 gi|240103552|ref|YP_002959861.1| - 4.3 6.5 10.4 6.8 5.8 9.9 1.5 1 1 0 1 1 1 0 TMPIT-like protein DUF4407 PF14362.6 gi|240103552|ref|YP_002959861.1| - 4.6 6.5 10.6 7.5 5.8 10.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DivIC PF04977.15 gi|240103552|ref|YP_002959861.1| - 4.6 7.1 19.0 5.9 6.7 5.4 2.2 2 0 0 2 2 2 0 Septum formation initiator HemX PF04375.14 gi|240103552|ref|YP_002959861.1| - 4.7 6.4 17.7 52 3.0 17.7 1.9 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Fib_alpha PF08702.10 gi|240103552|ref|YP_002959861.1| - 4.7 7.4 12.6 13 6.0 12.6 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF5320 PF17253.2 gi|240103552|ref|YP_002959861.1| - 4.8 8.3 11.8 4.2 8.5 1.6 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5320) Atg14 PF10186.9 gi|240103552|ref|YP_002959861.1| - 6.2 5.8 12.3 9.8 5.2 12.3 1.3 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF948 PF06103.11 gi|240103552|ref|YP_002959861.1| - 6.4 7.1 10.4 3 8.2 3.0 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF2203 PF09969.9 gi|240103552|ref|YP_002959861.1| - 6.5 7.5 12.2 2.8 8.7 6.7 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF3086 PF11285.8 gi|240103552|ref|YP_002959861.1| - 6.7 5.7 9.7 0.74 8.9 1.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) TcdB_N PF12918.7 gi|240103552|ref|YP_002959861.1| - 6.8 7.1 11.4 1.2 9.5 1.6 2.4 2 1 0 2 2 2 0 TcdB toxin N-terminal helical domain FlxA PF14282.6 gi|240103552|ref|YP_002959861.1| - 6.8 6.7 20.4 3.1 7.9 3.4 2.4 2 1 0 2 2 2 0 FlxA-like protein Tektin PF03148.14 gi|240103552|ref|YP_002959861.1| - 7 5.3 17.1 2.5 6.8 5.0 2.0 2 0 0 2 2 2 0 Tektin family CREPT PF16566.5 gi|240103552|ref|YP_002959861.1| - 7.4 6.7 15.2 1.1e+03 -0.2 15.1 2.1 1 1 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour bZIP_Maf PF03131.17 gi|240103552|ref|YP_002959861.1| - 7.7 7.1 13.2 10 6.7 2.0 2.2 2 0 0 2 2 2 0 bZIP Maf transcription factor DUF3958 PF13125.6 gi|240103552|ref|YP_002959861.1| - 8.5 6.6 18.8 84 3.4 18.8 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3958) YscO PF07321.12 gi|240103552|ref|YP_002959861.1| - 9.2 6.2 21.1 3.3 7.6 6.4 2.1 1 1 1 2 2 2 0 Type III secretion protein YscO Swi5 PF07061.11 gi|240103552|ref|YP_002959861.1| - 9.6 6.4 16.7 17 5.6 4.9 2.6 1 1 1 2 2 2 0 Swi5 MCU PF04678.13 gi|240103552|ref|YP_002959861.1| - 10 6.2 13.8 1.3 9.1 2.8 2.0 1 1 1 2 2 2 0 Mitochondrial calcium uniporter DUF2070 PF09843.9 gi|240103553|ref|YP_002959862.1| - 3.9 5.6 8.4 4.4 5.5 8.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Pcc1 PF09341.10 gi|240103554|ref|YP_002959863.1| - 1.1e-11 44.7 0.0 1.2e-11 44.6 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Glycos_transf_2 PF00535.26 gi|240103556|ref|YP_002959865.1| - 4e-40 137.4 0.0 4.9e-40 137.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|240103556|ref|YP_002959865.1| - 1.7e-15 57.6 0.0 2.3e-15 57.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|240103556|ref|YP_002959865.1| - 9.7e-07 28.5 0.0 1.6e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|240103556|ref|YP_002959865.1| - 1.4e-05 25.5 0.0 3e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|240103556|ref|YP_002959865.1| - 0.095 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 Pantoate_transf PF02548.15 gi|240103557|ref|YP_002959866.1| - 8.7e-107 356.3 0.1 1e-106 356.1 0.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|240103557|ref|YP_002959866.1| - 2.1e-09 37.2 0.9 2.5e-08 33.7 0.1 2.1 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase NanE PF04131.14 gi|240103557|ref|YP_002959866.1| - 0.024 13.8 0.4 9.3 5.4 0.0 3.0 3 0 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase Amdase PF17645.1 gi|240103557|ref|YP_002959866.1| - 0.13 11.9 0.5 1.6 8.3 0.2 2.2 2 0 0 2 2 2 0 Arylmalonate decarboxylase Archease PF01951.16 gi|240103558|ref|YP_002959867.1| - 4.4e-46 156.5 0.1 4.9e-46 156.4 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Methyltr_RsmB-F PF01189.17 gi|240103559|ref|YP_002959868.1| - 3.5e-53 180.2 0.0 4.5e-53 179.9 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|240103559|ref|YP_002959868.1| - 4.6e-17 62.3 0.0 1.7e-16 60.5 0.0 1.9 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|240103559|ref|YP_002959868.1| - 0.0026 17.9 0.0 0.0041 17.2 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|240103559|ref|YP_002959868.1| - 0.037 14.7 0.0 0.091 13.5 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltranf_PUA PF13636.6 gi|240103560|ref|YP_002959869.1| - 2.8e-14 52.8 0.2 4.4e-14 52.2 0.2 1.3 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF PEGA PF08308.11 gi|240103561|ref|YP_002959870.1| - 5.7e-91 298.5 40.7 9e-20 70.3 3.1 5.8 4 1 1 5 5 5 5 PEGA domain CarboxypepD_reg PF13620.6 gi|240103561|ref|YP_002959870.1| - 1.8e-15 57.0 37.0 0.00017 21.8 0.1 7.8 8 0 0 8 8 6 5 Carboxypeptidase regulatory-like domain BetaGal_dom4_5 PF13364.6 gi|240103561|ref|YP_002959870.1| - 1.4e-08 35.3 4.6 0.37 11.4 0.0 5.5 1 1 4 5 5 5 3 Beta-galactosidase jelly roll domain DUF5122 PF17164.4 gi|240103561|ref|YP_002959870.1| - 1.4e-08 34.8 25.1 0.21 11.9 0.2 7.9 7 0 0 7 7 7 3 Domain of unknown function (DUF5122) beta-propeller CarbopepD_reg_2 PF13715.6 gi|240103561|ref|YP_002959870.1| - 1.7e-07 31.1 27.4 0.039 14.0 0.2 6.6 3 2 2 5 5 5 3 CarboxypepD_reg-like domain Kelch_6 PF13964.6 gi|240103561|ref|YP_002959870.1| - 3.4e-05 23.9 10.3 0.27 11.6 0.0 7.2 8 0 0 8 8 7 1 Kelch motif BcsB PF03170.13 gi|240103561|ref|YP_002959870.1| - 8e-05 21.2 0.4 0.26 9.6 0.1 3.8 3 1 2 5 5 5 2 Bacterial cellulose synthase subunit Arylsulfotrans PF05935.11 gi|240103561|ref|YP_002959870.1| - 0.00015 20.8 0.5 0.11 11.4 0.0 2.8 1 1 3 4 4 4 3 Arylsulfotransferase (ASST) Kelch_2 PF07646.15 gi|240103561|ref|YP_002959870.1| - 0.00081 19.3 0.3 8.7 6.5 0.0 5.2 6 0 0 6 6 5 0 Kelch motif DUF2846 PF11008.8 gi|240103561|ref|YP_002959870.1| - 0.0016 18.4 6.1 0.99 9.5 0.1 5.2 3 2 2 5 5 5 1 Protein of unknown function (DUF2846) DUF1349 PF07081.11 gi|240103561|ref|YP_002959870.1| - 0.0022 17.7 0.1 8.5 6.1 0.1 4.3 3 1 1 4 4 4 1 Protein of unknown function (DUF1349) AMPK1_CBM PF16561.5 gi|240103561|ref|YP_002959870.1| - 0.005 17.0 0.1 3.4 7.9 0.0 4.6 4 0 0 4 4 4 1 Glycogen recognition site of AMP-activated protein kinase Fn3-like PF14310.6 gi|240103561|ref|YP_002959870.1| - 0.008 16.3 1.0 4.1 7.6 0.7 4.0 3 0 0 3 3 3 1 Fibronectin type III-like domain DUF4399 PF14347.6 gi|240103561|ref|YP_002959870.1| - 0.068 13.6 0.1 16 6.0 0.0 3.4 3 0 0 3 3 2 0 Domain of unknown function (DUF4399) CBM60 PF16841.5 gi|240103561|ref|YP_002959870.1| - 0.069 13.6 2.6 11 6.5 0.0 4.7 4 1 0 4 4 4 0 Ca-dependent carbohydrate-binding module xylan-binding RHS PF03527.14 gi|240103561|ref|YP_002959870.1| - 0.14 11.9 10.1 18 5.1 0.1 5.7 6 0 0 6 6 6 0 RHS protein VCBS PF13517.6 gi|240103561|ref|YP_002959870.1| - 0.38 11.4 22.1 22 5.7 0.3 7.2 4 2 2 6 6 6 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella PQQ PF01011.21 gi|240103561|ref|YP_002959870.1| - 0.39 10.7 19.7 26 5.0 0.2 6.6 6 0 0 6 6 6 0 PQQ enzyme repeat Laminin_G_3 PF13385.6 gi|240103561|ref|YP_002959870.1| - 0.49 10.5 24.5 7.5 6.7 0.9 7.1 6 2 2 8 8 8 0 Concanavalin A-like lectin/glucanases superfamily NHL PF01436.21 gi|240103561|ref|YP_002959870.1| - 3.7 7.8 19.5 12 6.2 0.2 6.6 7 0 0 7 7 7 0 NHL repeat PQQ_3 PF13570.6 gi|240103561|ref|YP_002959870.1| - 8.2 7.1 28.2 2.2 8.9 0.2 7.0 7 0 0 7 7 6 0 PQQ-like domain RtcB PF01139.17 gi|240103562|ref|YP_002959871.1| - 3.2e-181 603.0 0.1 3.6e-181 602.8 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Complex1_LYR PF05347.15 gi|240103562|ref|YP_002959871.1| - 0.11 12.5 0.1 0.24 11.5 0.1 1.5 1 0 0 1 1 1 0 Complex 1 protein (LYR family) Carb_anhydrase PF00194.21 gi|240103562|ref|YP_002959871.1| - 0.32 10.5 0.7 0.52 9.8 0.7 1.2 1 0 0 1 1 1 0 Eukaryotic-type carbonic anhydrase RHH_3 PF12651.7 gi|240103563|ref|YP_002959872.1| - 0.036 14.0 1.5 0.058 13.4 1.5 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix domain Spore_III_AF PF09581.10 gi|240103563|ref|YP_002959872.1| - 0.14 12.1 0.8 0.18 11.8 0.8 1.1 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) NTP_transf_5 PF14907.6 gi|240103564|ref|YP_002959873.1| - 0.0065 16.1 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase TrmB PF01978.19 gi|240103565|ref|YP_002959874.1| - 8.7e-06 25.5 0.0 1.4e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|240103565|ref|YP_002959874.1| - 4.4e-05 23.2 0.0 7e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|240103565|ref|YP_002959874.1| - 0.0018 18.1 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|240103565|ref|YP_002959874.1| - 0.0022 18.3 0.0 0.0034 17.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 gi|240103565|ref|YP_002959874.1| - 0.01 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|240103565|ref|YP_002959874.1| - 0.033 14.2 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF977 PF06163.11 gi|240103565|ref|YP_002959874.1| - 0.081 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_23 PF13384.6 gi|240103565|ref|YP_002959874.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain GreA_GreB_N PF03449.15 gi|240103566|ref|YP_002959875.1| - 0.055 13.6 0.3 0.89 9.8 0.0 2.5 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal RecG_N PF17190.4 gi|240103567|ref|YP_002959876.1| - 0.014 16.1 0.2 0.024 15.4 0.2 1.4 1 1 0 1 1 1 0 RecG N-terminal helical domain DNMT1-RFD PF12047.8 gi|240103567|ref|YP_002959876.1| - 0.02 14.9 0.0 0.024 14.7 0.0 1.1 1 0 0 1 1 1 0 Cytosine specific DNA methyltransferase replication foci domain DUF1447 PF07288.11 gi|240103567|ref|YP_002959876.1| - 0.098 12.7 0.1 0.38 10.8 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1447) tRNA-synt_1g PF09334.11 gi|240103568|ref|YP_002959877.1| - 5.8e-161 535.6 0.0 7.5e-161 535.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|240103568|ref|YP_002959877.1| - 1.7e-33 114.6 0.1 2.9e-33 113.8 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|240103568|ref|YP_002959877.1| - 1.7e-16 59.6 0.3 3.3e-08 32.3 0.1 3.6 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|240103568|ref|YP_002959877.1| - 2.4e-12 47.1 0.1 4.8e-12 46.1 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|240103568|ref|YP_002959877.1| - 0.00035 20.0 0.0 0.56 9.5 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.7 gi|240103568|ref|YP_002959877.1| - 0.017 15.1 4.3 0.034 14.2 4.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|240103568|ref|YP_002959877.1| - 0.41 10.1 9.2 4.4 6.9 3.7 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zf_C2H2_13 PF18508.1 gi|240103568|ref|YP_002959877.1| - 0.47 10.1 2.8 16 5.2 0.2 2.6 2 0 0 2 2 2 0 Zinc finger domain Cys_rich_CPXG PF14255.6 gi|240103568|ref|YP_002959877.1| - 2 8.4 7.7 1.1e+02 2.9 0.0 3.4 1 1 1 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_2 PF13240.6 gi|240103568|ref|YP_002959877.1| - 3.6 7.4 10.3 1.4 8.7 3.8 3.0 2 1 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|240103568|ref|YP_002959877.1| - 4.9 7.2 5.6 2.4 8.2 0.9 2.5 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 HAD_2 PF13419.6 gi|240103570|ref|YP_002959879.1| - 4.7e-27 95.2 0.0 8.4e-27 94.4 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240103570|ref|YP_002959879.1| - 1.2e-16 61.7 0.0 2.5e-16 60.6 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|240103570|ref|YP_002959879.1| - 7.3e-12 46.1 0.1 8.9e-12 45.8 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|240103570|ref|YP_002959879.1| - 3.7e-10 39.7 0.0 9.3e-10 38.4 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.18 gi|240103570|ref|YP_002959879.1| - 0.0064 16.3 0.0 0.91 9.3 0.0 2.1 2 0 0 2 2 2 2 NLI interacting factor-like phosphatase Acid_phosphat_B PF03767.14 gi|240103570|ref|YP_002959879.1| - 0.023 14.3 0.0 5.2 6.6 0.0 2.1 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_3 PF08282.12 gi|240103570|ref|YP_002959879.1| - 0.19 11.5 0.1 1.4 8.6 0.0 2.1 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase TrmO PF01980.16 gi|240103571|ref|YP_002959880.1| - 8.8e-26 90.5 0.0 1.6e-25 89.6 0.0 1.4 1 0 0 1 1 1 1 tRNA-methyltransferase O AAA_3 PF07726.11 gi|240103572|ref|YP_002959881.1| - 1.1e-63 212.9 0.0 1.8e-63 212.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|240103572|ref|YP_002959881.1| - 7.5e-20 70.6 0.5 1.4e-19 69.7 0.5 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|240103572|ref|YP_002959881.1| - 2.6e-11 43.7 0.0 4.2e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|240103572|ref|YP_002959881.1| - 1.3e-05 25.7 0.0 2.1e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|240103572|ref|YP_002959881.1| - 0.00013 21.8 0.0 0.0011 18.7 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|240103572|ref|YP_002959881.1| - 0.00069 19.4 0.0 0.007 16.1 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|240103572|ref|YP_002959881.1| - 0.00095 18.3 0.0 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|240103572|ref|YP_002959881.1| - 0.0039 16.6 0.1 2 7.7 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI CarboxypepD_reg PF13620.6 gi|240103573|ref|YP_002959882.1| - 5e-07 29.9 1.0 0.00076 19.7 0.2 3.1 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4129 PF13559.6 gi|240103573|ref|YP_002959882.1| - 5.1e-05 23.5 0.3 9.4e-05 22.6 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Big_3_5 PF16640.5 gi|240103573|ref|YP_002959882.1| - 0.00012 22.2 0.1 0.023 14.9 0.1 2.6 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) Big_1 PF02369.16 gi|240103573|ref|YP_002959882.1| - 0.0057 16.6 3.5 0.07 13.2 0.1 2.7 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|240103573|ref|YP_002959882.1| - 0.0097 16.0 0.1 2.3 8.4 0.0 2.5 2 0 0 2 2 2 2 Macroglobulin domain MG4 MG2 PF01835.19 gi|240103573|ref|YP_002959882.1| - 0.065 13.7 0.0 0.22 12.0 0.0 1.9 1 0 0 1 1 1 0 MG2 domain YfhO PF09586.10 gi|240103574|ref|YP_002959883.1| - 0.18 10.0 3.5 0.19 9.9 3.5 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO CedA PF10729.9 gi|240103574|ref|YP_002959883.1| - 0.27 11.1 1.5 9.2 6.2 0.0 3.0 3 0 0 3 3 3 0 Cell division activator CedA DUF2070 PF09843.9 gi|240103574|ref|YP_002959883.1| - 1.4 7.2 7.0 2.1 6.5 7.0 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) Wzy_C PF04932.15 gi|240103574|ref|YP_002959883.1| - 6.1 6.5 12.2 2.3 7.8 1.8 2.4 1 1 1 2 2 2 0 O-Antigen ligase DUF58 PF01882.18 gi|240103575|ref|YP_002959884.1| - 9e-22 77.2 0.0 1.6e-21 76.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF4131 PF13567.6 gi|240103576|ref|YP_002959885.1| - 0.21 11.3 0.1 0.21 11.3 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) AdoHcyase PF05221.17 gi|240103577|ref|YP_002959886.1| - 2e-67 227.4 0.0 6e-35 120.8 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|240103577|ref|YP_002959886.1| - 2.1e-49 167.7 0.1 3.3e-49 167.0 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|240103577|ref|YP_002959886.1| - 7.9e-09 35.1 0.1 1.9e-08 33.9 0.1 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|240103577|ref|YP_002959886.1| - 6.6e-05 22.5 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|240103577|ref|YP_002959886.1| - 0.00013 21.9 2.7 0.054 13.4 0.6 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|240103577|ref|YP_002959886.1| - 0.047 12.9 0.1 0.091 12.0 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_RFF PF18321.1 gi|240103577|ref|YP_002959886.1| - 0.081 13.4 1.1 1.2 9.6 0.2 2.4 2 0 0 2 2 2 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain TrkA_N PF02254.18 gi|240103577|ref|YP_002959886.1| - 0.088 13.1 0.4 0.22 11.8 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain NifT PF06988.11 gi|240103577|ref|YP_002959886.1| - 0.11 12.3 0.0 0.28 11.0 0.0 1.7 1 0 0 1 1 1 0 NifT/FixU protein THF_DHG_CYH_C PF02882.19 gi|240103577|ref|YP_002959886.1| - 0.12 11.6 0.4 0.62 9.4 0.4 1.9 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AlaDh_PNT_C PF01262.21 gi|240103577|ref|YP_002959886.1| - 0.15 11.3 1.7 0.35 10.2 1.7 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Herpes_IE2_3 PF03361.14 gi|240103577|ref|YP_002959886.1| - 0.19 11.6 0.0 0.36 10.7 0.0 1.4 1 0 0 1 1 1 0 Herpes virus intermediate/early protein 2/3 Cyclase PF04199.13 gi|240103578|ref|YP_002959887.1| - 1e-23 84.1 0.0 1.5e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase GIT_CC PF16559.5 gi|240103579|ref|YP_002959888.1| - 7.6e-05 22.5 5.6 0.28 11.1 0.1 4.2 4 0 0 4 4 3 2 GIT coiled-coil Rho guanine nucleotide exchange factor MAD PF05557.13 gi|240103579|ref|YP_002959888.1| - 0.001 17.5 35.5 0.0019 16.7 35.5 1.4 1 1 0 1 1 1 1 Mitotic checkpoint protein Phage_GP20 PF06810.11 gi|240103579|ref|YP_002959888.1| - 0.002 18.0 13.1 0.0086 15.9 5.1 3.6 1 1 1 3 3 3 2 Phage minor structural protein GP20 DUF4407 PF14362.6 gi|240103579|ref|YP_002959888.1| - 0.002 17.5 10.0 0.013 14.9 10.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4407) MbeD_MobD PF04899.12 gi|240103579|ref|YP_002959888.1| - 0.0046 17.0 8.3 2.2 8.4 0.4 4.6 3 2 1 4 4 4 2 MbeD/MobD like Cnn_1N PF07989.11 gi|240103579|ref|YP_002959888.1| - 0.0066 16.6 9.4 0.0066 16.6 9.4 4.6 3 1 1 4 4 4 1 Centrosomin N-terminal motif 1 Atg14 PF10186.9 gi|240103579|ref|YP_002959888.1| - 0.0099 15.0 28.5 0.36 9.9 0.9 3.2 1 1 2 3 3 3 2 Vacuolar sorting 38 and autophagy-related subunit 14 GAS PF13851.6 gi|240103579|ref|YP_002959888.1| - 0.011 15.2 10.3 0.011 15.2 10.3 3.6 2 2 0 3 3 3 0 Growth-arrest specific micro-tubule binding ApoLp-III PF07464.11 gi|240103579|ref|YP_002959888.1| - 0.012 15.7 6.2 2.3 8.3 0.2 4.1 2 1 1 3 3 3 0 Apolipophorin-III precursor (apoLp-III) Bacillus_HBL PF05791.11 gi|240103579|ref|YP_002959888.1| - 0.024 14.5 5.5 0.064 13.1 0.2 3.4 1 1 3 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) CENP-H PF05837.12 gi|240103579|ref|YP_002959888.1| - 0.027 14.9 32.7 0.26 11.7 5.7 4.4 1 1 4 5 5 5 0 Centromere protein H (CENP-H) Rootletin PF15035.6 gi|240103579|ref|YP_002959888.1| - 0.036 14.1 33.2 0.096 12.7 13.5 3.0 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion DUF1664 PF07889.12 gi|240103579|ref|YP_002959888.1| - 0.043 13.9 11.6 0.95 9.5 1.2 3.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 gi|240103579|ref|YP_002959888.1| - 0.072 13.5 1.3 0.072 13.5 1.3 5.5 3 2 2 5 5 5 0 Flagella accessory protein C (FlaC) TPR_MLP1_2 PF07926.12 gi|240103579|ref|YP_002959888.1| - 0.16 12.0 32.0 0.14 12.2 6.8 4.3 2 2 3 5 5 5 0 TPR/MLP1/MLP2-like protein Prp19 PF08606.11 gi|240103579|ref|YP_002959888.1| - 0.19 11.8 0.1 0.19 11.8 0.1 3.4 4 0 0 4 4 2 0 Prp19/Pso4-like Snapin_Pallidin PF14712.6 gi|240103579|ref|YP_002959888.1| - 0.22 12.0 23.3 0.37 11.2 2.7 4.4 3 1 2 5 5 5 0 Snapin/Pallidin Prominin PF05478.11 gi|240103579|ref|YP_002959888.1| - 0.29 9.0 13.5 0.094 10.7 1.0 2.6 1 1 2 3 3 3 0 Prominin CRA PF06589.11 gi|240103579|ref|YP_002959888.1| - 0.36 11.0 4.8 8 6.6 0.5 2.5 1 1 1 2 2 2 0 Circumsporozoite-related antigen (CRA) FliD_C PF07195.12 gi|240103579|ref|YP_002959888.1| - 0.47 9.8 6.7 5.8 6.3 0.0 3.4 3 1 0 3 3 3 0 Flagellar hook-associated protein 2 C-terminus Fez1 PF06818.15 gi|240103579|ref|YP_002959888.1| - 0.5 10.8 32.7 0.45 10.9 20.7 2.7 1 1 1 2 2 2 0 Fez1 BLOC1_2 PF10046.9 gi|240103579|ref|YP_002959888.1| - 0.72 10.2 17.7 0.57 10.5 1.9 4.3 2 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 EMP24_GP25L PF01105.24 gi|240103579|ref|YP_002959888.1| - 0.76 9.7 12.4 12 5.7 12.4 3.0 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Lebercilin PF15619.6 gi|240103579|ref|YP_002959888.1| - 0.84 9.3 43.1 0.81 9.3 5.7 3.8 1 1 3 4 4 4 0 Ciliary protein causing Leber congenital amaurosis disease Fib_alpha PF08702.10 gi|240103579|ref|YP_002959888.1| - 0.87 9.8 16.1 3.9 7.6 2.1 3.7 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DASH_Hsk3 PF08227.11 gi|240103579|ref|YP_002959888.1| - 0.98 9.8 6.7 27 5.2 0.5 4.0 4 1 0 4 4 3 0 DASH complex subunit Hsk3 like Lectin_N PF03954.14 gi|240103579|ref|YP_002959888.1| - 1.3 8.8 6.8 4.9 6.9 0.1 3.6 2 1 2 5 5 5 0 Hepatic lectin, N-terminal domain YabA PF06156.13 gi|240103579|ref|YP_002959888.1| - 1.3 9.7 32.9 1.4 9.6 6.0 4.9 1 1 2 3 3 2 0 Initiation control protein YabA MtrG PF04210.13 gi|240103579|ref|YP_002959888.1| - 1.3 8.9 10.0 0.89 9.5 0.1 4.4 4 1 1 5 5 5 0 Tetrahydromethanopterin S-methyltransferase, subunit G Mu-like_Pro PF10123.9 gi|240103579|ref|YP_002959888.1| - 1.6 8.2 6.4 0.96 8.9 3.1 1.9 1 1 1 2 2 2 0 Mu-like prophage I protein FlxA PF14282.6 gi|240103579|ref|YP_002959888.1| - 1.7 8.7 9.6 20 5.2 0.1 3.9 2 1 0 3 3 3 0 FlxA-like protein DUF4140 PF13600.6 gi|240103579|ref|YP_002959888.1| - 1.9 9.0 25.0 1 9.9 2.8 4.8 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF5094 PF17015.5 gi|240103579|ref|YP_002959888.1| - 2 8.5 9.7 0.15 12.2 3.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF5094) RmuC PF02646.16 gi|240103579|ref|YP_002959888.1| - 2 7.4 22.4 1 8.4 0.8 4.1 2 1 2 4 4 4 0 RmuC family Goodbye PF17109.5 gi|240103579|ref|YP_002959888.1| - 2.4 8.6 6.9 56 4.2 0.1 3.6 2 1 2 4 4 4 0 fungal STAND N-terminal Goodbye domain DASH_Dam1 PF08653.10 gi|240103579|ref|YP_002959888.1| - 2.6 7.9 5.2 1.1e+02 2.7 0.3 4.4 4 0 0 4 4 4 0 DASH complex subunit Dam1 Tropomyosin_1 PF12718.7 gi|240103579|ref|YP_002959888.1| - 2.7 8.1 43.7 0.29 11.3 8.7 3.9 1 1 0 3 3 3 0 Tropomyosin like RPN7 PF10602.9 gi|240103579|ref|YP_002959888.1| - 3.1 7.5 9.2 0.16 11.7 0.5 2.9 2 1 1 3 3 3 0 26S proteasome subunit RPN7 Sec34 PF04136.15 gi|240103579|ref|YP_002959888.1| - 3.9 7.3 13.9 6.1 6.7 1.2 3.7 1 1 2 4 4 4 0 Sec34-like family Spc7 PF08317.11 gi|240103579|ref|YP_002959888.1| - 4.1 6.2 36.8 16 4.2 12.9 3.2 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF4709 PF15821.5 gi|240103579|ref|YP_002959888.1| - 6.7 7.0 19.4 7 7.0 2.9 3.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4709) DUF4559 PF15112.6 gi|240103579|ref|YP_002959888.1| - 7.2 6.2 12.8 0.82 9.3 6.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) ADIP PF11559.8 gi|240103579|ref|YP_002959888.1| - 7.4 6.6 32.2 3.7 7.6 4.5 4.2 1 1 3 4 4 4 0 Afadin- and alpha -actinin-Binding FUSC PF04632.12 gi|240103579|ref|YP_002959888.1| - 8 4.9 12.5 8.5 4.8 3.8 2.2 1 1 2 3 3 3 0 Fusaric acid resistance protein family DUF4473 PF14747.6 gi|240103580|ref|YP_002959889.1| - 0.089 13.4 0.0 0.19 12.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4473) Rpr2 PF04032.16 gi|240103581|ref|YP_002959890.1| - 3.3e-17 62.5 0.1 5.8e-17 61.8 0.1 1.4 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF4294 PF14127.6 gi|240103581|ref|YP_002959890.1| - 0.028 14.4 1.2 0.032 14.1 1.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4294) HEAT_UF PF18817.1 gi|240103582|ref|YP_002959891.1| - 7.9e-23 80.5 4.5 6.6e-22 77.5 2.5 2.8 3 0 0 3 3 3 1 Repeat of uncharacterized protein PH0542 Adaptin_N PF01602.20 gi|240103582|ref|YP_002959891.1| - 3.3e-10 39.1 1.1 1e-09 37.6 1.1 1.6 1 1 0 1 1 1 1 Adaptin N terminal region HEAT PF02985.22 gi|240103582|ref|YP_002959891.1| - 1.4e-08 34.2 1.2 0.003 17.7 0.0 5.2 6 0 0 6 6 6 1 HEAT repeat Cnd1 PF12717.7 gi|240103582|ref|YP_002959891.1| - 4.6e-08 33.3 3.9 5e-05 23.4 0.7 3.0 1 1 1 3 3 3 3 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.6 gi|240103582|ref|YP_002959891.1| - 1.2e-07 32.0 0.4 0.0017 18.7 0.0 3.3 1 1 2 3 3 3 1 HEAT repeats HEAT_EZ PF13513.6 gi|240103582|ref|YP_002959891.1| - 1.5e-06 28.6 0.7 0.0054 17.2 0.0 4.1 3 2 2 5 5 5 1 HEAT-like repeat Nipped-B_C PF12830.7 gi|240103582|ref|YP_002959891.1| - 0.0014 18.6 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 Sister chromatid cohesion C-terminus Proteasom_PSMB PF10508.9 gi|240103582|ref|YP_002959891.1| - 0.0025 16.4 2.4 0.0042 15.7 1.5 1.8 1 1 1 2 2 2 1 Proteasome non-ATPase 26S subunit RIX1 PF08167.12 gi|240103582|ref|YP_002959891.1| - 0.0035 17.1 0.0 0.039 13.7 0.0 2.1 2 0 0 2 2 2 1 rRNA processing/ribosome biogenesis RTP1_C1 PF10363.9 gi|240103582|ref|YP_002959891.1| - 0.0045 17.1 1.0 1.3 9.3 0.1 2.6 2 1 0 2 2 2 2 Required for nuclear transport of RNA pol II C-terminus 1 Vac14_Fab1_bd PF12755.7 gi|240103582|ref|YP_002959891.1| - 0.046 14.3 1.5 0.6 10.7 0.0 2.7 2 1 1 3 3 3 0 Vacuolar 14 Fab1-binding region Terminase_2 PF03592.16 gi|240103582|ref|YP_002959891.1| - 0.14 12.6 1.2 1.2 9.7 0.4 2.3 2 1 0 2 2 2 0 Terminase small subunit PQQ_3 PF13570.6 gi|240103583|ref|YP_002959892.1| - 2.6e-11 43.6 30.8 0.0035 17.8 0.6 8.1 7 2 0 7 7 7 5 PQQ-like domain PQQ_2 PF13360.6 gi|240103583|ref|YP_002959892.1| - 2.7e-09 36.9 1.0 1.3e-07 31.5 0.1 3.0 2 1 0 2 2 2 1 PQQ-like domain PQQ PF01011.21 gi|240103583|ref|YP_002959892.1| - 0.42 10.6 0.1 0.42 10.6 0.1 6.3 8 0 0 8 8 8 0 PQQ enzyme repeat CheC PF04509.12 gi|240103585|ref|YP_002959894.1| - 1.5e-06 28.0 0.0 4.3e-06 26.5 0.0 1.8 1 0 0 1 1 1 1 CheC-like family CheX PF13690.6 gi|240103585|ref|YP_002959894.1| - 0.00092 19.3 0.0 0.0014 18.8 0.0 1.2 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX P2 PF07194.11 gi|240103586|ref|YP_002959895.1| - 3.5e-23 81.5 0.4 1.1e-10 41.4 0.0 3.4 3 0 0 3 3 3 2 P2 response regulator binding domain HATPase_c PF02518.26 gi|240103586|ref|YP_002959895.1| - 1.8e-17 63.9 0.1 4e-17 62.7 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 gi|240103586|ref|YP_002959895.1| - 6.6e-15 55.2 0.0 1.9e-14 53.6 0.0 1.9 1 0 0 1 1 1 1 Hpt domain H-kinase_dim PF02895.14 gi|240103586|ref|YP_002959895.1| - 0.00012 22.4 0.1 0.024 15.0 0.1 2.9 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_2 PF13581.6 gi|240103586|ref|YP_002959895.1| - 0.0029 17.6 0.0 0.0067 16.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain CheW PF01584.19 gi|240103586|ref|YP_002959895.1| - 0.005 16.5 0.1 0.016 14.8 0.1 1.9 1 1 0 1 1 1 1 CheW-like domain Syntaxin_2 PF14523.6 gi|240103586|ref|YP_002959895.1| - 0.012 15.9 0.5 0.6 10.5 0.1 3.0 3 0 0 3 3 3 0 Syntaxin-like protein GntR PF00392.21 gi|240103586|ref|YP_002959895.1| - 0.023 14.3 2.4 4.7 6.9 0.1 4.2 4 0 0 4 4 4 0 Bacterial regulatory proteins, gntR family HATPase_c_3 PF13589.6 gi|240103586|ref|YP_002959895.1| - 0.089 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|240103587|ref|YP_002959896.1| - 1.1e-32 112.5 0.5 1.3e-32 112.3 0.5 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_25 PF13649.6 gi|240103588|ref|YP_002959897.1| - 1.1e-13 51.7 0.0 2.3e-13 50.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240103588|ref|YP_002959897.1| - 1.7e-11 44.2 0.0 2.8e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|240103588|ref|YP_002959897.1| - 2.7e-11 43.5 0.0 4.2e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240103588|ref|YP_002959897.1| - 2.4e-10 40.9 0.0 6.7e-10 39.5 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|240103588|ref|YP_002959897.1| - 1.6e-09 38.4 0.0 3.3e-09 37.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|240103588|ref|YP_002959897.1| - 4e-09 36.1 0.0 6.2e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|240103588|ref|YP_002959897.1| - 3.3e-06 26.6 0.0 5.2e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.19 gi|240103588|ref|YP_002959897.1| - 6.5e-05 22.8 0.0 0.00066 19.5 0.0 2.1 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|240103588|ref|YP_002959897.1| - 0.00043 19.6 0.0 0.00082 18.7 0.0 1.5 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|240103588|ref|YP_002959897.1| - 0.028 14.0 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PMT2_N PF17987.1 gi|240103588|ref|YP_002959897.1| - 0.031 14.5 0.0 9.4 6.4 0.0 2.4 2 0 0 2 2 2 0 Phosphoethanolamine N-methyltransferase 2 N-terminal Rsm22 PF09243.10 gi|240103588|ref|YP_002959897.1| - 0.036 13.4 0.0 0.069 12.4 0.0 1.4 2 0 0 2 2 2 0 Mitochondrial small ribosomal subunit Rsm22 NNMT_PNMT_TEMT PF01234.17 gi|240103588|ref|YP_002959897.1| - 0.077 12.2 0.0 0.18 11.0 0.0 1.6 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family PrmA PF06325.13 gi|240103588|ref|YP_002959897.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|240103588|ref|YP_002959897.1| - 0.17 11.4 0.0 0.49 9.9 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase small domain CheR PF01739.18 gi|240103588|ref|YP_002959897.1| - 0.21 11.0 0.0 0.46 9.9 0.0 1.6 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain DUF1495 PF07381.11 gi|240103589|ref|YP_002959898.1| - 3.2e-32 110.2 0.6 3.8e-32 110.0 0.6 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_IclR PF09339.10 gi|240103589|ref|YP_002959898.1| - 0.077 12.8 0.0 0.81 9.5 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|240103589|ref|YP_002959898.1| - 0.089 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family S10_plectin PF03501.15 gi|240103589|ref|YP_002959898.1| - 0.23 11.5 1.2 0.39 10.8 1.2 1.4 1 0 0 1 1 1 0 Plectin/S10 domain Arch_flagellin PF01917.16 gi|240103590|ref|YP_002959899.1| - 4.5e-50 170.0 9.9 7.8e-50 169.3 9.9 1.4 1 1 0 1 1 1 1 Archaebacterial flagellin Big_3_2 PF12245.8 gi|240103590|ref|YP_002959899.1| - 0.00049 20.4 0.4 0.00084 19.6 0.4 1.3 1 0 0 1 1 1 1 Bacterial Ig-like domain Arch_flagellin PF01917.16 gi|240103591|ref|YP_002959900.1| - 3.7e-50 170.3 7.0 4.5e-50 170.0 7.0 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DotA PF11388.8 gi|240103591|ref|YP_002959900.1| - 0.039 14.2 0.4 0.077 13.2 0.4 1.4 1 0 0 1 1 1 0 Phagosome trafficking protein DotA Arch_flagellin PF01917.16 gi|240103592|ref|YP_002959901.1| - 3e-49 167.3 3.1 3.5e-49 167.2 3.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin BSP PF04450.12 gi|240103592|ref|YP_002959901.1| - 0.13 12.1 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria Tad PF13400.6 gi|240103592|ref|YP_002959901.1| - 0.55 10.6 6.6 1.4 9.3 6.6 1.7 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like Arch_flagellin PF01917.16 gi|240103593|ref|YP_002959902.1| - 1.1e-47 162.2 4.6 1.3e-47 162.1 4.6 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Minor_capsid_1 PF10665.9 gi|240103593|ref|YP_002959902.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 Minor capsid protein FlaC_arch PF05377.11 gi|240103594|ref|YP_002959903.1| - 4.9e-22 78.1 15.4 1.6e-20 73.2 2.2 3.4 3 1 0 3 3 3 2 Flagella accessory protein C (FlaC) EzrA PF06160.12 gi|240103594|ref|YP_002959903.1| - 2.2e-06 26.2 11.7 5.1e-05 21.6 3.4 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA LPP PF04728.13 gi|240103594|ref|YP_002959903.1| - 1.1e-05 25.7 7.1 0.084 13.3 0.3 3.6 1 1 1 3 3 3 1 Lipoprotein leucine-zipper Sec34 PF04136.15 gi|240103594|ref|YP_002959903.1| - 1.4e-05 25.0 4.2 4.1e-05 23.5 0.6 2.0 1 1 1 2 2 2 1 Sec34-like family Cep57_MT_bd PF06657.13 gi|240103594|ref|YP_002959903.1| - 5.1e-05 23.6 4.5 0.096 13.1 0.8 2.7 2 1 1 3 3 3 2 Centrosome microtubule-binding domain of Cep57 BLOC1_2 PF10046.9 gi|240103594|ref|YP_002959903.1| - 0.00025 21.3 13.1 0.016 15.5 5.7 2.6 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|240103594|ref|YP_002959903.1| - 0.00032 20.7 10.8 0.063 13.3 4.5 2.4 1 1 2 3 3 3 3 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|240103594|ref|YP_002959903.1| - 0.00036 20.6 8.4 0.0012 18.9 8.5 1.9 1 1 0 1 1 1 1 Laminin Domain II TPR_MLP1_2 PF07926.12 gi|240103594|ref|YP_002959903.1| - 0.00044 20.3 2.8 0.00044 20.3 2.8 2.2 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein HemX PF04375.14 gi|240103594|ref|YP_002959903.1| - 0.00059 19.2 5.6 0.0035 16.7 0.5 2.0 1 1 1 2 2 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase IFT57 PF10498.9 gi|240103594|ref|YP_002959903.1| - 0.00071 18.6 10.1 0.001 18.1 10.1 1.3 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 CENP-F_leu_zip PF10473.9 gi|240103594|ref|YP_002959903.1| - 0.0011 19.0 16.4 0.15 12.1 9.0 2.3 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.12 gi|240103594|ref|YP_002959903.1| - 0.0013 18.8 5.3 0.0047 17.0 5.3 1.8 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2046 PF09755.9 gi|240103594|ref|YP_002959903.1| - 0.0016 17.8 13.4 0.15 11.3 13.4 2.2 1 1 0 1 1 1 1 Uncharacterized conserved protein H4 (DUF2046) Tektin PF03148.14 gi|240103594|ref|YP_002959903.1| - 0.0017 17.2 14.0 0.052 12.3 6.8 2.0 1 1 0 1 1 1 1 Tektin family DUF4140 PF13600.6 gi|240103594|ref|YP_002959903.1| - 0.0018 18.6 11.3 0.16 12.4 0.4 3.0 1 1 1 2 2 2 1 N-terminal domain of unknown function (DUF4140) Fib_alpha PF08702.10 gi|240103594|ref|YP_002959903.1| - 0.002 18.3 14.1 0.0079 16.4 3.9 2.1 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family Fez1 PF06818.15 gi|240103594|ref|YP_002959903.1| - 0.0023 18.4 9.0 0.0029 18.1 9.0 1.1 1 0 0 1 1 1 1 Fez1 Phage_GPO PF05929.11 gi|240103594|ref|YP_002959903.1| - 0.0024 17.6 4.7 0.1 12.2 0.2 2.0 1 1 1 2 2 2 1 Phage capsid scaffolding protein (GPO) serine peptidase GAS PF13851.6 gi|240103594|ref|YP_002959903.1| - 0.0029 17.0 14.3 0.021 14.2 5.8 2.1 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding HMMR_N PF15905.5 gi|240103594|ref|YP_002959903.1| - 0.003 17.1 16.0 0.0038 16.8 16.0 1.1 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Spc7 PF08317.11 gi|240103594|ref|YP_002959903.1| - 0.0031 16.4 15.9 0.065 12.1 7.5 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF4618 PF15397.6 gi|240103594|ref|YP_002959903.1| - 0.0033 16.9 14.4 0.23 10.8 5.4 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4618) Seryl_tRNA_N PF02403.22 gi|240103594|ref|YP_002959903.1| - 0.0033 17.6 16.2 0.052 13.8 2.6 2.7 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain TMPIT PF07851.13 gi|240103594|ref|YP_002959903.1| - 0.0038 16.5 5.2 0.0061 15.9 5.0 1.5 1 1 0 1 1 1 1 TMPIT-like protein bZIP_1 PF00170.21 gi|240103594|ref|YP_002959903.1| - 0.0043 17.1 11.0 0.2 11.8 0.3 3.1 2 1 1 3 3 3 2 bZIP transcription factor Nsp1_C PF05064.13 gi|240103594|ref|YP_002959903.1| - 0.0043 16.8 2.4 0.0043 16.8 2.4 2.6 1 1 2 3 3 3 1 Nsp1-like C-terminal region DHC_N2 PF08393.13 gi|240103594|ref|YP_002959903.1| - 0.0053 15.9 4.9 0.012 14.8 1.7 1.9 1 1 1 2 2 2 1 Dynein heavy chain, N-terminal region 2 APG17 PF04108.12 gi|240103594|ref|YP_002959903.1| - 0.0058 15.8 4.3 0.008 15.3 4.3 1.2 1 0 0 1 1 1 1 Autophagy protein Apg17 Pterin_bind PF00809.22 gi|240103594|ref|YP_002959903.1| - 0.0059 16.3 1.5 0.0069 16.1 0.7 1.6 2 0 0 2 2 1 1 Pterin binding enzyme DUF2730 PF10805.8 gi|240103594|ref|YP_002959903.1| - 0.007 16.4 10.2 0.46 10.6 4.6 2.9 1 1 1 2 2 2 1 Protein of unknown function (DUF2730) Filament PF00038.21 gi|240103594|ref|YP_002959903.1| - 0.0076 15.9 11.0 0.024 14.2 11.0 1.6 1 1 0 1 1 1 1 Intermediate filament protein TMF_DNA_bd PF12329.8 gi|240103594|ref|YP_002959903.1| - 0.0092 16.0 15.4 0.26 11.3 1.4 2.7 2 1 0 2 2 2 1 TATA element modulatory factor 1 DNA binding DUF4201 PF13870.6 gi|240103594|ref|YP_002959903.1| - 0.01 15.6 11.8 0.21 11.3 12.0 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) Phlebovirus_NSM PF07246.11 gi|240103594|ref|YP_002959903.1| - 0.011 15.2 6.5 0.42 9.9 2.3 2.0 1 1 1 2 2 2 0 Phlebovirus nonstructural protein NS-M Exonuc_VII_L PF02601.15 gi|240103594|ref|YP_002959903.1| - 0.011 15.4 1.5 0.013 15.1 1.5 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Atg14 PF10186.9 gi|240103594|ref|YP_002959903.1| - 0.012 14.8 11.5 0.17 11.0 11.8 1.9 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF812 PF05667.11 gi|240103594|ref|YP_002959903.1| - 0.012 14.5 16.0 0.045 12.6 16.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF812) DHR10 PF18595.1 gi|240103594|ref|YP_002959903.1| - 0.013 15.6 11.8 0.13 12.3 4.1 2.2 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain PspA_IM30 PF04012.12 gi|240103594|ref|YP_002959903.1| - 0.013 15.1 6.7 0.41 10.2 0.4 2.2 1 1 1 2 2 2 0 PspA/IM30 family End3 PF12761.7 gi|240103594|ref|YP_002959903.1| - 0.014 15.5 6.6 0.93 9.6 2.2 2.2 2 0 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 KinB_sensor PF16767.5 gi|240103594|ref|YP_002959903.1| - 0.019 15.4 1.3 0.045 14.2 0.3 1.9 1 1 1 2 2 2 0 Sensor domain of alginate biosynthesis sensor protein KinB DUF4164 PF13747.6 gi|240103594|ref|YP_002959903.1| - 0.021 15.1 10.4 8.5 6.7 7.9 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) ADIP PF11559.8 gi|240103594|ref|YP_002959903.1| - 0.025 14.7 10.3 0.16 12.0 3.3 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding CdvA PF18822.1 gi|240103594|ref|YP_002959903.1| - 0.027 14.3 13.9 0.77 9.6 13.9 2.4 1 1 0 1 1 1 0 CdvA-like coiled-coil domain DUF2353 PF09789.9 gi|240103594|ref|YP_002959903.1| - 0.03 13.7 9.8 0.043 13.2 9.5 1.4 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) FlxA PF14282.6 gi|240103594|ref|YP_002959903.1| - 0.033 14.2 16.7 2 8.4 2.2 3.0 1 1 1 2 2 2 0 FlxA-like protein MscS_porin PF12795.7 gi|240103594|ref|YP_002959903.1| - 0.034 13.7 10.4 0.17 11.4 10.4 1.9 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain SKA2 PF16740.5 gi|240103594|ref|YP_002959903.1| - 0.036 13.8 11.1 0.063 13.1 4.1 2.2 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 MAD PF05557.13 gi|240103594|ref|YP_002959903.1| - 0.039 12.3 13.6 0.066 11.6 12.9 1.6 1 1 0 1 1 1 0 Mitotic checkpoint protein FPP PF05911.11 gi|240103594|ref|YP_002959903.1| - 0.04 12.1 11.5 0.051 11.8 11.5 1.1 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil Myc-LZ PF02344.15 gi|240103594|ref|YP_002959903.1| - 0.041 14.0 2.0 0.098 12.8 2.0 1.7 1 0 0 1 1 1 0 Myc leucine zipper domain DASH_Dam1 PF08653.10 gi|240103594|ref|YP_002959903.1| - 0.048 13.5 5.0 1.8 8.4 0.1 3.2 3 0 0 3 3 3 0 DASH complex subunit Dam1 FapA PF03961.13 gi|240103594|ref|YP_002959903.1| - 0.048 12.3 14.6 1 7.9 14.6 2.0 1 1 0 1 1 1 0 Flagellar Assembly Protein A DUF2203 PF09969.9 gi|240103594|ref|YP_002959903.1| - 0.048 14.4 8.1 0.12 13.0 1.1 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Occludin_ELL PF07303.13 gi|240103594|ref|YP_002959903.1| - 0.053 14.3 9.0 0.073 13.8 3.8 2.3 1 1 1 2 2 2 0 Occludin homology domain COG5 PF10392.9 gi|240103594|ref|YP_002959903.1| - 0.055 13.6 4.3 0.93 9.7 0.7 2.3 1 1 1 2 2 2 0 Golgi transport complex subunit 5 HIP1_clath_bdg PF16515.5 gi|240103594|ref|YP_002959903.1| - 0.055 14.1 10.3 0.59 10.8 1.0 2.4 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Vps54_N PF10475.9 gi|240103594|ref|YP_002959903.1| - 0.056 12.7 6.6 0.036 13.3 1.4 2.0 1 1 1 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex GreA_GreB_N PF03449.15 gi|240103594|ref|YP_002959903.1| - 0.062 13.5 11.2 1.8 8.8 0.1 3.1 3 0 0 3 3 3 0 Transcription elongation factor, N-terminal AAA_13 PF13166.6 gi|240103594|ref|YP_002959903.1| - 0.062 11.9 12.9 0.12 11.0 12.9 1.4 1 1 0 1 1 1 0 AAA domain Bap31_Bap29_C PF18035.1 gi|240103594|ref|YP_002959903.1| - 0.063 13.3 12.3 0.53 10.3 1.1 3.5 3 2 0 3 3 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain ATG16 PF08614.11 gi|240103594|ref|YP_002959903.1| - 0.065 13.5 11.3 2.1 8.5 11.4 2.1 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Prominin PF05478.11 gi|240103594|ref|YP_002959903.1| - 0.068 11.1 7.9 0.38 8.7 7.9 1.7 1 1 0 1 1 1 0 Prominin DUF4094 PF13334.6 gi|240103594|ref|YP_002959903.1| - 0.073 13.5 12.1 0.12 12.8 0.6 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) HalX PF08663.10 gi|240103594|ref|YP_002959903.1| - 0.075 13.4 7.7 9.4 6.6 0.9 3.4 2 1 1 3 3 3 0 HalX domain TssO PF17561.2 gi|240103594|ref|YP_002959903.1| - 0.078 13.1 14.0 0.52 10.4 13.6 2.2 1 1 0 1 1 1 0 Type VI secretion system, TssO Med30 PF11315.8 gi|240103594|ref|YP_002959903.1| - 0.078 13.2 9.5 0.1 12.8 9.5 1.2 1 0 0 1 1 1 0 Mediator complex subunit 30 Cnn_1N PF07989.11 gi|240103594|ref|YP_002959903.1| - 0.079 13.1 15.6 0.26 11.5 1.0 2.6 2 1 0 2 2 2 0 Centrosomin N-terminal motif 1 VSG_B PF13206.6 gi|240103594|ref|YP_002959903.1| - 0.092 12.0 4.4 0.083 12.1 1.2 1.9 2 0 0 2 2 2 0 Trypanosomal VSG domain TolA_bind_tri PF16331.5 gi|240103594|ref|YP_002959903.1| - 0.092 12.8 16.0 0.47 10.6 2.1 3.0 1 1 1 2 2 2 0 TolA binding protein trimerisation SesA PF17107.5 gi|240103594|ref|YP_002959903.1| - 0.096 12.9 2.9 0.23 11.7 0.5 2.1 1 1 1 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Med9 PF07544.13 gi|240103594|ref|YP_002959903.1| - 0.1 12.7 14.5 1 9.5 3.4 3.1 1 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Bacillus_HBL PF05791.11 gi|240103594|ref|YP_002959903.1| - 0.11 12.3 8.6 0.064 13.1 3.3 2.0 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF948 PF06103.11 gi|240103594|ref|YP_002959903.1| - 0.12 12.7 5.2 0.45 10.8 1.0 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Prefoldin PF02996.17 gi|240103594|ref|YP_002959903.1| - 0.12 12.3 0.6 0.12 12.3 0.6 3.2 2 1 1 3 3 3 0 Prefoldin subunit Syntaxin-6_N PF09177.11 gi|240103594|ref|YP_002959903.1| - 0.12 12.9 10.3 4.3 7.9 0.3 2.9 1 1 2 3 3 3 0 Syntaxin 6, N-terminal F_actin_bind PF08919.10 gi|240103594|ref|YP_002959903.1| - 0.13 12.4 1.9 2 8.5 0.1 2.6 1 1 2 3 3 3 0 F-actin binding Sec8_exocyst PF04048.14 gi|240103594|ref|YP_002959903.1| - 0.14 12.0 4.9 1.4 8.8 0.2 2.2 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Vps53_N PF04100.12 gi|240103594|ref|YP_002959903.1| - 0.18 10.8 10.2 1.8 7.4 5.5 2.1 1 1 1 2 2 2 0 Vps53-like, N-terminal V-SNARE PF05008.15 gi|240103594|ref|YP_002959903.1| - 0.19 12.2 9.5 1.6 9.2 8.5 2.6 1 1 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus BRE1 PF08647.11 gi|240103594|ref|YP_002959903.1| - 0.19 11.8 9.5 0.28 11.3 7.2 2.1 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase WEMBL PF05701.11 gi|240103594|ref|YP_002959903.1| - 0.23 10.1 11.8 0.38 9.4 11.0 1.5 1 1 0 1 1 1 0 Weak chloroplast movement under blue light ISG65-75 PF11727.8 gi|240103594|ref|YP_002959903.1| - 0.23 10.7 4.2 0.24 10.6 2.6 1.7 1 1 1 2 2 2 0 Invariant surface glycoprotein Fmp27_WPPW PF10359.9 gi|240103594|ref|YP_002959903.1| - 0.23 10.3 9.0 1.4 7.6 9.3 1.8 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IFT20 PF14931.6 gi|240103594|ref|YP_002959903.1| - 0.25 11.5 15.7 0.96 9.6 1.9 2.6 1 1 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 THOC7 PF05615.13 gi|240103594|ref|YP_002959903.1| - 0.25 11.6 14.5 1.1 9.6 6.6 2.3 1 1 1 2 2 2 0 Tho complex subunit 7 MCPsignal PF00015.21 gi|240103594|ref|YP_002959903.1| - 0.28 11.0 5.4 0.37 10.6 3.1 1.9 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF4407 PF14362.6 gi|240103594|ref|YP_002959903.1| - 0.28 10.5 5.0 1.7 7.9 5.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) MutS_IV PF05190.18 gi|240103594|ref|YP_002959903.1| - 0.28 11.5 7.3 5.4 7.4 0.1 3.3 2 1 1 3 3 3 0 MutS family domain IV WXG100 PF06013.12 gi|240103594|ref|YP_002959903.1| - 0.29 11.4 2.8 3.3 8.0 1.1 2.8 1 1 1 2 2 2 0 Proteins of 100 residues with WXG GrpE PF01025.19 gi|240103594|ref|YP_002959903.1| - 0.31 10.7 13.8 2.2 7.9 6.6 2.1 1 1 1 2 2 2 0 GrpE HTH_11 PF08279.12 gi|240103594|ref|YP_002959903.1| - 0.32 11.0 4.7 8.2 6.5 0.4 3.1 3 1 1 4 4 2 0 HTH domain Nup54_57_C PF18570.1 gi|240103594|ref|YP_002959903.1| - 0.33 10.6 4.6 1.8 8.2 0.6 2.9 2 0 0 2 2 2 0 NUP57/Nup54 C-terminal domain DUF5082 PF16888.5 gi|240103594|ref|YP_002959903.1| - 0.35 11.2 16.3 1.9 8.8 1.1 3.1 1 1 1 3 3 3 0 Domain of unknown function (DUF5082) CRR7 PF12095.8 gi|240103594|ref|YP_002959903.1| - 0.36 11.3 4.6 0.24 11.8 0.8 2.1 1 1 1 2 2 2 0 Protein CHLORORESPIRATORY REDUCTION 7 DUF745 PF05335.13 gi|240103594|ref|YP_002959903.1| - 0.36 10.5 3.8 0.52 10.0 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF745) HrpB7 PF09486.10 gi|240103594|ref|YP_002959903.1| - 0.38 11.1 5.4 4.1 7.8 1.6 2.3 2 1 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) KASH_CCD PF14662.6 gi|240103594|ref|YP_002959903.1| - 0.39 10.5 18.6 0.94 9.3 18.6 1.6 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH XhlA PF10779.9 gi|240103594|ref|YP_002959903.1| - 0.4 10.9 13.9 0.31 11.3 7.3 2.8 2 1 1 3 3 3 0 Haemolysin XhlA KxDL PF10241.9 gi|240103594|ref|YP_002959903.1| - 0.4 11.0 6.6 0.96 9.8 0.5 2.5 1 1 1 2 2 2 0 Uncharacterized conserved protein NPV_P10 PF05531.12 gi|240103594|ref|YP_002959903.1| - 0.41 11.1 13.2 9.9 6.7 6.8 3.0 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF2205 PF10224.9 gi|240103594|ref|YP_002959903.1| - 0.41 10.7 13.1 1.2 9.2 5.2 2.2 1 1 1 2 2 2 0 Short coiled-coil protein YabA PF06156.13 gi|240103594|ref|YP_002959903.1| - 0.41 11.3 12.8 21 5.8 11.2 2.7 1 1 0 1 1 1 0 Initiation control protein YabA DUF1192 PF06698.11 gi|240103594|ref|YP_002959903.1| - 0.44 10.6 10.7 0.95 9.6 1.0 3.4 2 1 1 3 3 2 0 Protein of unknown function (DUF1192) Prefoldin_2 PF01920.20 gi|240103594|ref|YP_002959903.1| - 0.45 10.5 19.5 1.3 9.0 1.9 3.4 1 1 2 3 3 3 0 Prefoldin subunit P4Ha_N PF08336.11 gi|240103594|ref|YP_002959903.1| - 0.47 10.5 8.3 0.73 9.8 2.0 2.4 1 1 1 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region TraF_2 PF13729.6 gi|240103594|ref|YP_002959903.1| - 0.5 9.7 4.6 0.31 10.4 2.2 1.7 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein FmiP_Thoc5 PF09766.9 gi|240103594|ref|YP_002959903.1| - 0.51 9.6 11.0 0.92 8.7 4.5 2.0 1 1 1 2 2 2 0 Fms-interacting protein/Thoc5 BST2 PF16716.5 gi|240103594|ref|YP_002959903.1| - 0.56 10.8 14.9 1.8 9.2 2.0 3.0 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 PRKG1_interact PF15898.5 gi|240103594|ref|YP_002959903.1| - 0.58 11.1 12.4 3.3 8.7 1.5 2.5 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain TBK1_CCD1 PF18394.1 gi|240103594|ref|YP_002959903.1| - 0.59 9.6 12.4 1 8.9 1.1 2.1 1 1 1 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 DivIC PF04977.15 gi|240103594|ref|YP_002959903.1| - 0.6 9.9 16.5 5.3 6.9 6.7 3.1 1 1 1 2 2 2 0 Septum formation initiator DUF5344 PF17279.2 gi|240103594|ref|YP_002959903.1| - 0.61 10.7 10.8 0.96 10.1 0.3 3.2 2 1 1 3 3 3 0 Family of unknown function (DUF5344) SKA1 PF07160.12 gi|240103594|ref|YP_002959903.1| - 0.64 9.8 11.5 0.29 10.9 4.4 2.1 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 NBP1 PF08537.10 gi|240103594|ref|YP_002959903.1| - 0.65 9.3 10.5 0.91 8.9 10.5 1.2 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 ATPase PF06745.13 gi|240103594|ref|YP_002959903.1| - 0.68 9.2 8.3 0.72 9.2 4.3 2.0 1 1 1 2 2 2 0 KaiC DUF632 PF04782.12 gi|240103594|ref|YP_002959903.1| - 0.71 9.1 6.9 1.6 8.0 6.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF632) DUF3450 PF11932.8 gi|240103594|ref|YP_002959903.1| - 0.75 9.1 11.9 1.5 8.0 5.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF4806 PF16064.5 gi|240103594|ref|YP_002959903.1| - 0.75 10.1 7.8 0.57 10.5 2.5 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4806) Swi5 PF07061.11 gi|240103594|ref|YP_002959903.1| - 0.75 9.9 11.6 1.3 9.1 1.0 3.1 1 1 1 2 2 2 0 Swi5 Flagellin_N PF00669.20 gi|240103594|ref|YP_002959903.1| - 0.81 9.8 6.7 5 7.2 1.9 2.7 2 1 0 2 2 2 0 Bacterial flagellin N-terminal helical region Enkurin PF13864.6 gi|240103594|ref|YP_002959903.1| - 0.82 10.2 15.3 0.81 10.2 7.1 2.2 1 1 0 2 2 2 0 Calmodulin-binding SMC_Nse1 PF07574.13 gi|240103594|ref|YP_002959903.1| - 0.82 9.5 6.5 4.3 7.2 0.2 2.1 1 1 1 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex Uso1_p115_C PF04871.13 gi|240103594|ref|YP_002959903.1| - 0.86 10.0 11.8 0.11 12.9 1.4 2.2 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region CENP-H PF05837.12 gi|240103594|ref|YP_002959903.1| - 0.87 10.0 11.3 7.4 7.0 9.2 2.2 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Tmemb_cc2 PF10267.9 gi|240103594|ref|YP_002959903.1| - 0.89 8.6 14.3 3 6.9 8.0 2.0 1 1 1 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein UPF0449 PF15136.6 gi|240103594|ref|YP_002959903.1| - 0.94 10.0 8.0 6.6 7.3 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 Snapin_Pallidin PF14712.6 gi|240103594|ref|YP_002959903.1| - 0.94 9.9 13.5 1.2 9.6 4.0 2.4 1 1 1 2 2 2 0 Snapin/Pallidin V_ATPase_I PF01496.19 gi|240103594|ref|YP_002959903.1| - 0.96 7.3 11.8 1.1 7.1 1.9 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Cluap1 PF10234.9 gi|240103594|ref|YP_002959903.1| - 1 8.7 14.9 1 8.7 7.2 2.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 Nup88 PF10168.9 gi|240103594|ref|YP_002959903.1| - 1.2 6.9 10.7 1.8 6.3 10.7 1.2 1 0 0 1 1 1 0 Nuclear pore component Spc24 PF08286.11 gi|240103594|ref|YP_002959903.1| - 1.2 9.4 13.8 1 9.6 1.3 2.9 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 LRRFIP PF09738.9 gi|240103594|ref|YP_002959903.1| - 1.2 8.5 16.7 29 4.0 16.7 2.0 1 1 0 1 1 1 0 LRRFIP family COG2 PF06148.11 gi|240103594|ref|YP_002959903.1| - 1.2 9.2 7.9 3.5 7.7 0.3 2.8 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 USP8_interact PF08941.10 gi|240103594|ref|YP_002959903.1| - 1.3 8.8 6.4 8.9 6.1 2.0 2.2 1 1 1 2 2 2 0 USP8 interacting Rx_N PF18052.1 gi|240103594|ref|YP_002959903.1| - 1.4 9.3 8.9 4 7.8 0.4 2.4 1 1 1 2 2 2 0 Rx N-terminal domain HMMR_C PF15908.5 gi|240103594|ref|YP_002959903.1| - 1.5 9.1 8.5 1.4 9.1 0.1 2.8 1 1 2 3 3 3 0 Hyaluronan mediated motility receptor C-terminal Cob_adeno_trans PF01923.18 gi|240103594|ref|YP_002959903.1| - 1.5 8.9 6.3 2.1 8.5 2.4 2.1 1 1 1 2 2 2 0 Cobalamin adenosyltransferase SseC PF04888.12 gi|240103594|ref|YP_002959903.1| - 1.6 8.3 5.2 0.55 9.8 0.8 2.0 1 1 1 2 2 2 0 Secretion system effector C (SseC) like family CorA PF01544.18 gi|240103594|ref|YP_002959903.1| - 1.6 8.0 10.3 3.6 6.8 10.3 1.7 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF724 PF05266.14 gi|240103594|ref|YP_002959903.1| - 1.7 8.4 13.3 0.6 9.9 6.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Cep57_CLD_2 PF14197.6 gi|240103594|ref|YP_002959903.1| - 1.7 8.8 10.4 0.18 11.9 3.4 2.4 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 DUF16 PF01519.16 gi|240103594|ref|YP_002959903.1| - 1.9 9.0 14.3 57 4.3 14.3 2.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF4349 PF14257.6 gi|240103594|ref|YP_002959903.1| - 1.9 7.9 9.1 2.4 7.6 3.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) APG6_N PF17675.1 gi|240103594|ref|YP_002959903.1| - 1.9 9.0 17.0 0.14 12.7 4.5 2.2 1 1 1 2 2 2 0 Apg6 coiled-coil region DUF1978 PF09321.10 gi|240103594|ref|YP_002959903.1| - 2 7.7 13.9 1.1 8.6 5.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1978) DUF4763 PF15960.5 gi|240103594|ref|YP_002959903.1| - 2.1 7.6 13.2 27 4.0 13.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) SlyX PF04102.12 gi|240103594|ref|YP_002959903.1| - 2.1 9.0 12.5 0.61 10.7 1.5 2.9 1 1 2 3 3 3 0 SlyX TMF_TATA_bd PF12325.8 gi|240103594|ref|YP_002959903.1| - 2.2 8.5 16.4 7.6 6.8 8.5 2.3 1 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF4200 PF13863.6 gi|240103594|ref|YP_002959903.1| - 2.2 8.7 17.0 82 3.6 15.9 2.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) FAM76 PF16046.5 gi|240103594|ref|YP_002959903.1| - 2.3 7.5 8.5 3.1 7.1 8.5 1.2 1 0 0 1 1 1 0 FAM76 protein HDV_ag PF01517.18 gi|240103594|ref|YP_002959903.1| - 2.3 8.0 5.1 4.6 7.0 0.0 2.6 2 1 0 2 2 2 0 Hepatitis delta virus delta antigen Latarcin PF10279.9 gi|240103594|ref|YP_002959903.1| - 2.6 8.5 12.8 12 6.4 12.6 2.3 1 1 0 1 1 1 0 Latarcin precursor 5_nucleotid PF05761.14 gi|240103594|ref|YP_002959903.1| - 2.7 6.8 8.7 15 4.3 8.7 1.9 1 1 0 1 1 1 0 5' nucleotidase family DUF4988 PF16378.5 gi|240103594|ref|YP_002959903.1| - 3.2 7.4 9.3 11 5.7 3.2 2.8 2 1 0 2 2 2 0 Domain of unknown function DUF2076 PF09849.9 gi|240103594|ref|YP_002959903.1| - 3.6 7.6 8.6 9.2 6.2 0.0 3.0 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2076) Uds1 PF15456.6 gi|240103594|ref|YP_002959903.1| - 4 7.6 8.6 11 6.2 0.2 3.0 2 1 1 3 3 3 0 Up-regulated During Septation RPW8 PF05659.11 gi|240103594|ref|YP_002959903.1| - 4.1 7.1 13.2 43 3.8 5.0 2.8 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF1640 PF07798.11 gi|240103594|ref|YP_002959903.1| - 4.3 7.4 12.5 13 5.8 12.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) Hemagglutinin PF00509.18 gi|240103594|ref|YP_002959903.1| - 4.8 5.5 9.9 58 1.9 9.8 1.9 1 1 0 1 1 1 0 Haemagglutinin PCRF PF03462.18 gi|240103594|ref|YP_002959903.1| - 5.1 6.9 11.1 12 5.7 9.9 1.9 1 1 0 1 1 1 0 PCRF domain SpoOE-like PF09388.10 gi|240103594|ref|YP_002959903.1| - 5.1 7.1 15.8 0.38 10.7 2.3 3.2 3 0 0 3 3 2 0 Spo0E like sporulation regulatory protein Phage_lysis PF03245.13 gi|240103594|ref|YP_002959903.1| - 5.1 7.2 6.9 34 4.6 2.7 2.6 1 1 1 2 2 2 0 Bacteriophage Rz lysis protein ZapB PF06005.12 gi|240103594|ref|YP_002959903.1| - 5.1 7.6 21.4 1.8e+04 -4.1 21.4 3.1 1 1 0 1 1 0 0 Cell division protein ZapB Fzo_mitofusin PF04799.13 gi|240103594|ref|YP_002959903.1| - 5.2 6.6 10.9 18 4.8 0.6 2.7 1 1 0 2 2 2 0 fzo-like conserved region MCU PF04678.13 gi|240103594|ref|YP_002959903.1| - 6.1 6.9 8.8 52 3.9 8.8 2.0 1 1 0 1 1 1 0 Mitochondrial calcium uniporter LMBR1 PF04791.16 gi|240103594|ref|YP_002959903.1| - 6.5 5.5 4.7 8.3 5.2 4.7 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF5320 PF17253.2 gi|240103594|ref|YP_002959903.1| - 6.8 7.8 10.0 2.6 9.2 0.8 2.8 2 1 1 3 3 3 0 Family of unknown function (DUF5320) CCDC-167 PF15188.6 gi|240103594|ref|YP_002959903.1| - 7.6 6.9 17.0 0.55 10.6 6.0 2.7 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 CC2-LZ PF16516.5 gi|240103594|ref|YP_002959903.1| - 7.8 6.9 12.7 6.5e+02 0.8 12.9 2.6 1 1 0 1 1 1 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator MetOD2 PF18548.1 gi|240103594|ref|YP_002959903.1| - 8 6.7 12.8 1.1 9.5 3.5 2.4 1 1 1 2 2 2 0 Metanogen output domain 2 Ribosomal_L29 PF00831.23 gi|240103594|ref|YP_002959903.1| - 9.8 6.2 11.0 0.48 10.4 1.0 3.1 2 1 0 2 2 1 0 Ribosomal L29 protein Arch_fla_DE PF04659.13 gi|240103595|ref|YP_002959904.1| - 1.6e-30 104.8 1.8 7.2e-30 102.7 0.0 2.8 2 1 1 3 3 3 1 Archaeal flagella protein HSBP1 PF06825.12 gi|240103595|ref|YP_002959904.1| - 0.014 15.2 10.7 1.5 8.7 0.0 4.8 4 1 1 5 5 5 0 Heat shock factor binding protein 1 Baculo_PEP_C PF04513.12 gi|240103595|ref|YP_002959904.1| - 0.028 14.4 3.9 0.33 11.0 0.9 3.0 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus WXG100 PF06013.12 gi|240103595|ref|YP_002959904.1| - 0.038 14.2 1.3 14 6.0 0.1 3.0 1 1 2 3 3 3 0 Proteins of 100 residues with WXG ParE_toxin PF05016.15 gi|240103595|ref|YP_002959904.1| - 0.068 13.8 0.7 0.068 13.8 0.7 3.7 2 1 2 4 4 4 0 ParE toxin of type II toxin-antitoxin system, parDE Gp-FAR-1 PF05823.12 gi|240103595|ref|YP_002959904.1| - 0.077 13.3 24.8 0.32 11.4 16.6 2.7 1 1 1 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) MbeD_MobD PF04899.12 gi|240103595|ref|YP_002959904.1| - 0.15 12.2 2.4 0.83 9.8 0.2 2.9 2 1 1 3 3 3 0 MbeD/MobD like FIVAR PF07554.13 gi|240103595|ref|YP_002959904.1| - 0.19 12.5 6.6 3.7 8.4 0.5 3.7 2 1 1 3 3 3 0 FIVAR domain Phage_lysozyme2 PF18013.1 gi|240103595|ref|YP_002959904.1| - 0.21 11.6 1.4 0.57 10.2 1.4 1.8 1 0 0 1 1 1 0 Phage tail lysozyme Allexi_40kDa PF05549.11 gi|240103595|ref|YP_002959904.1| - 0.33 10.4 15.5 0.015 14.9 7.0 2.7 1 1 2 3 3 3 0 Allexivirus 40kDa protein Exonuc_VII_L PF02601.15 gi|240103595|ref|YP_002959904.1| - 0.36 10.3 21.9 0.9 9.0 11.2 2.2 1 1 1 2 2 2 0 Exonuclease VII, large subunit RNR_Alpha PF17975.1 gi|240103595|ref|YP_002959904.1| - 0.39 11.2 4.1 0.9 10.1 2.7 2.3 1 1 1 2 2 2 0 Ribonucleotide reductase alpha domain NPV_P10 PF05531.12 gi|240103595|ref|YP_002959904.1| - 0.4 11.2 19.9 2.9 8.4 2.3 5.2 2 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein KxDL PF10241.9 gi|240103595|ref|YP_002959904.1| - 1.6 9.1 19.7 1.2 9.5 6.5 4.3 2 1 2 4 4 3 0 Uncharacterized conserved protein DUF948 PF06103.11 gi|240103595|ref|YP_002959904.1| - 1.8 8.9 18.2 0.31 11.3 1.0 4.5 4 2 0 4 4 4 0 Bacterial protein of unknown function (DUF948) PilJ PF13675.6 gi|240103595|ref|YP_002959904.1| - 1.9 8.5 6.1 3.6 7.6 0.8 3.0 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term FUSC PF04632.12 gi|240103595|ref|YP_002959904.1| - 2.4 6.6 2.7 5.5 5.4 2.8 1.6 1 1 0 1 1 1 0 Fusaric acid resistance protein family DUF1664 PF07889.12 gi|240103595|ref|YP_002959904.1| - 3.4 7.7 27.2 0.24 11.4 5.6 4.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) CorA PF01544.18 gi|240103595|ref|YP_002959904.1| - 8.5 5.6 22.9 1.3 8.3 13.5 3.4 2 2 2 4 4 4 0 CorA-like Mg2+ transporter protein Arch_flagellin PF01917.16 gi|240103596|ref|YP_002959905.1| - 6e-15 55.8 0.1 9.1e-15 55.2 0.1 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin YoeB_toxin PF06769.14 gi|240103596|ref|YP_002959905.1| - 0.032 14.3 0.2 0.83 9.7 0.1 2.3 2 0 0 2 2 2 0 YoeB-like toxin of bacterial type II toxin-antitoxin system CHASE4 PF05228.13 gi|240103596|ref|YP_002959905.1| - 1.4 9.1 5.6 2.7 8.2 5.6 1.7 1 1 0 1 1 1 0 CHASE4 domain Arch_flagellin PF01917.16 gi|240103597|ref|YP_002959906.1| - 6.7e-27 94.7 0.5 7.3e-27 94.6 0.5 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin ATPase PF06745.13 gi|240103598|ref|YP_002959907.1| - 3e-19 69.3 0.0 3.9e-19 68.9 0.0 1.0 1 0 0 1 1 1 1 KaiC NACHT PF05729.12 gi|240103598|ref|YP_002959907.1| - 0.00075 19.4 0.7 0.0033 17.4 0.7 1.8 1 1 0 1 1 1 1 NACHT domain AAA_25 PF13481.6 gi|240103598|ref|YP_002959907.1| - 0.0017 17.9 0.0 0.061 12.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain ELP6 PF09807.9 gi|240103598|ref|YP_002959907.1| - 0.0021 17.5 0.0 0.0026 17.2 0.0 1.2 1 0 0 1 1 1 1 Elongation complex protein 6 TsaE PF02367.17 gi|240103598|ref|YP_002959907.1| - 0.0052 16.8 0.0 0.0085 16.1 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|240103598|ref|YP_002959907.1| - 0.0087 16.5 0.1 0.016 15.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|240103598|ref|YP_002959907.1| - 0.021 14.8 0.1 0.078 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|240103598|ref|YP_002959907.1| - 0.021 15.2 0.0 0.066 13.6 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|240103598|ref|YP_002959907.1| - 0.043 13.3 0.1 0.069 12.7 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Rad51 PF08423.11 gi|240103598|ref|YP_002959907.1| - 0.054 12.7 0.1 0.1 11.8 0.1 1.4 1 0 0 1 1 1 0 Rad51 DUF815 PF05673.13 gi|240103598|ref|YP_002959907.1| - 0.067 12.4 0.0 0.096 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|240103598|ref|YP_002959907.1| - 0.11 12.5 0.1 0.2 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|240103599|ref|YP_002959908.1| - 7.4e-48 163.0 0.0 1.3e-47 162.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein CheR_N PF03705.15 gi|240103599|ref|YP_002959908.1| - 0.0052 16.5 0.9 0.64 9.8 0.1 2.9 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain AAA_29 PF13555.6 gi|240103599|ref|YP_002959908.1| - 0.0057 16.4 0.1 0.012 15.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|240103599|ref|YP_002959908.1| - 0.022 15.2 0.0 0.077 13.5 0.0 1.9 2 0 0 2 2 2 0 ABC transporter Dynamin_N PF00350.23 gi|240103599|ref|YP_002959908.1| - 0.081 13.0 0.0 0.22 11.6 0.0 1.7 2 0 0 2 2 2 0 Dynamin family AAA_16 PF13191.6 gi|240103599|ref|YP_002959908.1| - 0.15 12.5 0.0 0.52 10.7 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain DEAD PF00270.29 gi|240103599|ref|YP_002959908.1| - 0.2 11.4 0.0 1.1 9.0 0.0 2.1 2 1 0 2 2 2 0 DEAD/DEAH box helicase PKD_3 PF16820.5 gi|240103599|ref|YP_002959908.1| - 0.41 10.4 2.1 0.4 10.5 0.2 2.0 3 0 0 3 3 3 0 PKD-like domain T2SSF PF00482.23 gi|240103600|ref|YP_002959909.1| - 7.5e-18 64.7 3.1 1.4e-09 38.0 0.9 3.6 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F DUF4499 PF14934.6 gi|240103600|ref|YP_002959909.1| - 0.28 11.5 7.8 1.5 9.2 0.9 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4499) VirB3 PF05101.13 gi|240103600|ref|YP_002959909.1| - 0.61 10.4 0.0 0.61 10.4 0.0 4.6 5 0 0 5 5 5 0 Type IV secretory pathway, VirB3-like protein PCMT PF01135.19 gi|240103601|ref|YP_002959910.1| - 2.1e-65 220.4 0.0 2.5e-65 220.2 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|240103601|ref|YP_002959910.1| - 7.7e-09 35.5 0.0 1.2e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|240103601|ref|YP_002959910.1| - 1.8e-07 31.7 0.0 2.8e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240103601|ref|YP_002959910.1| - 1.7e-06 27.9 0.0 4.6e-06 26.6 0.0 1.6 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240103601|ref|YP_002959910.1| - 7.5e-05 23.3 0.0 0.0003 21.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|240103601|ref|YP_002959910.1| - 0.00051 19.2 0.0 0.00063 18.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.10 gi|240103601|ref|YP_002959910.1| - 0.0012 18.6 0.0 0.0016 18.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.20 gi|240103601|ref|YP_002959910.1| - 0.0015 17.9 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|240103601|ref|YP_002959910.1| - 0.0018 17.8 0.0 0.0046 16.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_3 PF01596.17 gi|240103601|ref|YP_002959910.1| - 0.0031 16.7 0.0 0.0053 16.0 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Fibrillarin PF01269.17 gi|240103601|ref|YP_002959910.1| - 0.018 14.1 0.0 0.026 13.6 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin PrmA PF06325.13 gi|240103601|ref|YP_002959910.1| - 0.023 14.1 0.0 0.03 13.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltr_RsmB-F PF01189.17 gi|240103601|ref|YP_002959910.1| - 0.059 13.0 0.0 0.12 12.0 0.0 1.4 2 0 0 2 2 2 0 16S rRNA methyltransferase RsmB/F Met_10 PF02475.16 gi|240103601|ref|YP_002959910.1| - 0.069 12.9 0.0 0.099 12.4 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_16 PF10294.9 gi|240103601|ref|YP_002959910.1| - 0.18 11.6 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Lysine methyltransferase Ubie_methyltran PF01209.18 gi|240103601|ref|YP_002959910.1| - 0.22 10.9 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family TIP49 PF06068.13 gi|240103602|ref|YP_002959911.1| - 1.4e-138 461.9 0.9 1.9e-138 461.5 0.9 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|240103602|ref|YP_002959911.1| - 3.4e-22 78.3 0.1 1.4e-20 73.2 0.2 2.5 2 0 0 2 2 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|240103602|ref|YP_002959911.1| - 1.7e-10 41.4 0.1 1.5e-06 28.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|240103602|ref|YP_002959911.1| - 4.6e-08 33.0 0.1 8.2e-05 22.4 0.1 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|240103602|ref|YP_002959911.1| - 8.5e-06 26.2 0.0 7.1e-05 23.2 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|240103602|ref|YP_002959911.1| - 4.7e-05 23.7 0.0 0.33 11.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain ResIII PF04851.15 gi|240103602|ref|YP_002959911.1| - 0.00056 19.9 0.0 0.036 14.1 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_5 PF07728.14 gi|240103602|ref|YP_002959911.1| - 0.00083 19.4 0.1 0.0064 16.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|240103602|ref|YP_002959911.1| - 0.002 17.7 0.1 0.0056 16.2 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|240103602|ref|YP_002959911.1| - 0.002 18.5 0.2 3 8.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|240103602|ref|YP_002959911.1| - 0.0027 17.1 0.8 0.045 13.1 0.2 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|240103602|ref|YP_002959911.1| - 0.0039 16.9 0.1 0.15 11.7 0.1 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_33 PF13671.6 gi|240103602|ref|YP_002959911.1| - 0.008 16.3 0.5 0.047 13.9 0.0 2.4 2 2 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|240103602|ref|YP_002959911.1| - 0.008 16.2 0.1 0.025 14.6 0.1 1.8 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|240103602|ref|YP_002959911.1| - 0.0089 15.6 0.0 0.019 14.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|240103602|ref|YP_002959911.1| - 0.0093 16.5 3.3 0.03 14.8 3.3 2.0 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|240103602|ref|YP_002959911.1| - 0.0096 16.4 0.1 0.03 14.8 0.0 1.9 2 0 0 2 2 2 1 ABC transporter Zeta_toxin PF06414.12 gi|240103602|ref|YP_002959911.1| - 0.011 15.0 0.1 0.026 13.8 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 gi|240103602|ref|YP_002959911.1| - 0.021 13.9 2.6 0.27 10.3 0.3 2.4 1 1 1 2 2 2 0 Type II/IV secretion system protein DNA_pol3_delta PF06144.13 gi|240103602|ref|YP_002959911.1| - 0.032 14.0 0.0 0.074 12.8 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase III, delta subunit RNA_helicase PF00910.22 gi|240103602|ref|YP_002959911.1| - 0.034 14.5 0.0 0.061 13.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DnaB_C PF03796.15 gi|240103602|ref|YP_002959911.1| - 0.039 13.3 0.1 0.12 11.7 0.0 1.8 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain NACHT PF05729.12 gi|240103602|ref|YP_002959911.1| - 0.04 13.8 0.1 0.086 12.7 0.1 1.6 1 0 0 1 1 1 0 NACHT domain DEAD PF00270.29 gi|240103602|ref|YP_002959911.1| - 0.041 13.6 0.5 0.25 11.1 0.1 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase IstB_IS21 PF01695.17 gi|240103602|ref|YP_002959911.1| - 0.042 13.6 0.1 0.085 12.6 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|240103602|ref|YP_002959911.1| - 0.073 13.6 0.0 0.18 12.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|240103602|ref|YP_002959911.1| - 0.094 12.4 0.3 8.2 6.1 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|240103602|ref|YP_002959911.1| - 0.31 10.8 0.8 0.64 9.8 0.8 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain CPBP PF02517.16 gi|240103603|ref|YP_002959912.1| - 3e-10 40.3 7.3 6.5e-10 39.2 7.3 1.8 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease FKBP_C PF00254.28 gi|240103605|ref|YP_002959914.1| - 1.4e-16 60.5 0.0 6.7e-16 58.4 0.0 2.2 2 2 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|240103605|ref|YP_002959914.1| - 2.4e-06 27.5 0.5 6.6e-06 26.1 0.5 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal Lin-8 PF03353.15 gi|240103605|ref|YP_002959914.1| - 2.1 7.8 10.2 2.7 7.5 10.2 1.1 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist Presenilin PF01080.17 gi|240103605|ref|YP_002959914.1| - 5.8 5.6 5.6 7 5.3 5.6 1.1 1 0 0 1 1 1 0 Presenilin tRNA-synt_1e PF01406.19 gi|240103606|ref|YP_002959915.1| - 1.1e-138 461.7 2.1 1.9e-138 460.9 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|240103606|ref|YP_002959915.1| - 1.1e-21 77.1 0.7 1.5e-11 43.7 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|240103606|ref|YP_002959915.1| - 4.4e-18 65.5 1.8 1e-17 64.4 0.3 2.3 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 gi|240103606|ref|YP_002959915.1| - 1.5e-09 37.3 0.9 6.1e-06 25.4 0.0 3.1 2 1 1 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|240103606|ref|YP_002959915.1| - 4.5e-08 31.8 0.2 7.1e-05 21.2 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|240103606|ref|YP_002959915.1| - 0.027 13.4 0.6 0.17 10.7 0.6 2.3 1 1 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1d PF00750.19 gi|240103606|ref|YP_002959915.1| - 0.047 12.6 5.6 0.72 8.7 0.0 3.3 3 2 1 4 4 4 0 tRNA synthetases class I (R) CdvA PF18822.1 gi|240103606|ref|YP_002959915.1| - 4 7.3 10.3 3.9 7.3 0.2 3.4 3 1 1 4 4 4 0 CdvA-like coiled-coil domain PK PF00224.21 gi|240103607|ref|YP_002959916.1| - 3.6e-122 407.6 3.9 5e-122 407.1 3.9 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|240103607|ref|YP_002959916.1| - 6.8e-26 90.8 0.0 1.8e-25 89.5 0.0 1.8 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|240103607|ref|YP_002959916.1| - 6e-05 22.3 1.9 0.00034 19.8 0.2 2.3 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family IMPDH PF00478.25 gi|240103607|ref|YP_002959916.1| - 0.0016 17.5 1.2 0.024 13.6 0.0 2.8 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain B12-binding PF02310.19 gi|240103607|ref|YP_002959916.1| - 0.027 14.5 0.8 0.16 12.0 0.1 2.6 2 1 1 3 3 3 0 B12 binding domain FeoA PF04023.14 gi|240103607|ref|YP_002959916.1| - 0.089 13.1 0.3 0.25 11.6 0.3 1.8 1 0 0 1 1 1 0 FeoA domain Lyase_1 PF00206.20 gi|240103608|ref|YP_002959917.1| - 7.2e-58 196.4 0.0 9.5e-58 196.0 0.0 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|240103608|ref|YP_002959917.1| - 1.4e-20 73.6 0.4 9.7e-20 70.9 0.1 2.4 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|240103608|ref|YP_002959917.1| - 1.8e-06 28.1 0.0 3.9e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal Alba PF01918.21 gi|240103609|ref|YP_002959918.1| - 2.2e-22 78.6 1.2 2.8e-22 78.3 1.2 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|240103609|ref|YP_002959918.1| - 0.0003 20.8 0.1 0.00031 20.7 0.1 1.3 1 0 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P HTH_20 PF12840.7 gi|240103610|ref|YP_002959919.1| - 2.2e-10 40.4 0.0 4.1e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|240103610|ref|YP_002959919.1| - 8.6e-09 35.1 0.0 1.5e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|240103610|ref|YP_002959919.1| - 3.1e-07 30.1 0.0 5.7e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|240103610|ref|YP_002959919.1| - 9.2e-06 25.5 0.6 0.00053 19.8 0.1 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|240103610|ref|YP_002959919.1| - 9.7e-06 25.4 0.0 2.3e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|240103610|ref|YP_002959919.1| - 9.8e-06 26.0 0.1 2.4e-05 24.7 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|240103610|ref|YP_002959919.1| - 2.2e-05 23.9 0.0 5.5e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|240103610|ref|YP_002959919.1| - 0.00058 19.3 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|240103610|ref|YP_002959919.1| - 0.0016 18.6 0.0 0.0036 17.4 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|240103610|ref|YP_002959919.1| - 0.0017 18.2 0.0 0.0044 16.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|240103610|ref|YP_002959919.1| - 0.0051 16.6 0.0 0.021 14.6 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.6 gi|240103610|ref|YP_002959919.1| - 0.014 15.2 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|240103610|ref|YP_002959919.1| - 0.027 14.4 0.1 0.12 12.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family GerE PF00196.19 gi|240103610|ref|YP_002959919.1| - 0.05 13.2 0.0 0.15 11.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|240103610|ref|YP_002959919.1| - 0.074 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.6 gi|240103610|ref|YP_002959919.1| - 0.094 13.2 0.0 0.19 12.2 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain DprA_WH PF17782.1 gi|240103610|ref|YP_002959919.1| - 0.15 12.2 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 DprA winged helix domain MGC-24 PF05283.11 gi|240103610|ref|YP_002959919.1| - 0.23 11.9 4.6 0.36 11.3 4.6 1.2 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin CBS PF00571.28 gi|240103611|ref|YP_002959920.1| - 4.7e-26 91.0 7.6 2.1e-12 47.3 0.2 2.2 2 0 0 2 2 2 2 CBS domain Sigma70_r1_1 PF03979.14 gi|240103611|ref|YP_002959920.1| - 0.03 14.4 0.9 6.6 6.9 0.2 2.3 1 1 1 2 2 2 0 Sigma-70 factor, region 1.1 zf-Sec23_Sec24 PF04810.15 gi|240103611|ref|YP_002959920.1| - 0.11 12.6 1.0 0.53 10.4 1.0 1.9 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger NTPase_1 PF03266.15 gi|240103612|ref|YP_002959921.1| - 3.9e-54 183.0 0.7 4.4e-54 182.9 0.7 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|240103612|ref|YP_002959921.1| - 3.5e-08 33.2 0.1 1.3e-07 31.4 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_16 PF13191.6 gi|240103612|ref|YP_002959921.1| - 4.5e-06 27.2 0.1 5e-06 27.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|240103612|ref|YP_002959921.1| - 3.8e-05 23.7 0.3 0.011 15.7 0.1 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|240103612|ref|YP_002959921.1| - 4.6e-05 23.2 0.6 0.00013 21.8 0.6 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|240103612|ref|YP_002959921.1| - 4.6e-05 23.7 0.2 0.00026 21.3 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|240103612|ref|YP_002959921.1| - 0.00011 22.6 0.0 0.00026 21.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|240103612|ref|YP_002959921.1| - 0.00021 21.8 0.2 0.00057 20.4 0.1 1.8 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|240103612|ref|YP_002959921.1| - 0.00032 20.6 0.0 0.00058 19.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_19 PF13245.6 gi|240103612|ref|YP_002959921.1| - 0.00047 20.5 0.3 0.0034 17.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain Bac_DnaA PF00308.18 gi|240103612|ref|YP_002959921.1| - 0.00082 19.3 0.0 0.16 11.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_5 PF07728.14 gi|240103612|ref|YP_002959921.1| - 0.00084 19.3 0.9 0.02 14.9 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|240103612|ref|YP_002959921.1| - 0.0009 19.0 0.2 0.12 12.1 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|240103612|ref|YP_002959921.1| - 0.002 18.3 0.0 0.0053 16.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|240103612|ref|YP_002959921.1| - 0.0032 17.5 0.4 0.081 13.0 0.1 2.8 1 1 1 2 2 2 1 AAA domain cobW PF02492.19 gi|240103612|ref|YP_002959921.1| - 0.0039 16.8 0.3 0.015 14.9 0.1 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|240103612|ref|YP_002959921.1| - 0.005 16.5 0.0 0.11 12.1 0.0 2.1 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|240103612|ref|YP_002959921.1| - 0.0078 15.2 0.3 0.028 13.4 0.2 1.9 1 1 1 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|240103612|ref|YP_002959921.1| - 0.0078 16.5 0.1 0.014 15.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|240103612|ref|YP_002959921.1| - 0.008 15.6 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 KaiC NB-ARC PF00931.22 gi|240103612|ref|YP_002959921.1| - 0.0099 15.1 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_17 PF13207.6 gi|240103612|ref|YP_002959921.1| - 0.011 16.2 0.1 0.022 15.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|240103612|ref|YP_002959921.1| - 0.011 15.5 0.1 1.8 8.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|240103612|ref|YP_002959921.1| - 0.012 15.3 0.1 0.044 13.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|240103612|ref|YP_002959921.1| - 0.014 15.3 0.2 0.036 14.0 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.22 gi|240103612|ref|YP_002959921.1| - 0.02 15.3 0.0 0.054 13.9 0.0 1.7 2 0 0 2 2 2 0 RNA helicase ATP_bind_1 PF03029.17 gi|240103612|ref|YP_002959921.1| - 0.023 14.5 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein PhoH PF02562.16 gi|240103612|ref|YP_002959921.1| - 0.042 13.3 0.3 0.066 12.7 0.3 1.4 1 1 0 1 1 1 0 PhoH-like protein AAA_7 PF12775.7 gi|240103612|ref|YP_002959921.1| - 0.088 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region APS_kinase PF01583.20 gi|240103612|ref|YP_002959921.1| - 0.091 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase ABC_tran PF00005.27 gi|240103612|ref|YP_002959921.1| - 0.095 13.2 0.2 0.19 12.2 0.1 1.6 2 0 0 2 2 2 0 ABC transporter RsgA_GTPase PF03193.16 gi|240103612|ref|YP_002959921.1| - 0.096 12.6 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Roc PF08477.13 gi|240103612|ref|YP_002959921.1| - 0.18 12.1 0.1 0.29 11.3 0.1 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_29 PF13555.6 gi|240103612|ref|YP_002959921.1| - 0.18 11.6 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.18 gi|240103612|ref|YP_002959921.1| - 0.23 11.1 0.1 0.53 10.0 0.1 1.8 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase IF-2B PF01008.17 gi|240103613|ref|YP_002959922.1| - 1.7e-83 280.1 0.0 2.1e-83 279.8 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF4147 PF13660.6 gi|240103614|ref|YP_002959923.1| - 2.3e-79 266.2 0.0 3.6e-79 265.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|240103614|ref|YP_002959923.1| - 5.9e-36 123.0 1.9 1.1e-35 122.1 1.9 1.5 1 0 0 1 1 1 1 MOFRL family Regulator_TrmB PF11495.8 gi|240103615|ref|YP_002959924.1| - 3.9e-50 170.2 1.4 5.5e-50 169.7 1.4 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|240103615|ref|YP_002959924.1| - 8.1e-21 73.7 0.0 3.5e-20 71.7 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|240103615|ref|YP_002959924.1| - 0.0051 16.7 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|240103615|ref|YP_002959924.1| - 0.0086 16.0 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|240103615|ref|YP_002959924.1| - 0.015 14.8 0.0 0.043 13.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ADH_N_assoc PF13823.6 gi|240103615|ref|YP_002959924.1| - 0.016 15.1 2.3 0.068 13.1 0.8 2.3 2 0 0 2 2 2 0 Alcohol dehydrogenase GroES-associated HTH_9 PF08221.11 gi|240103615|ref|YP_002959924.1| - 0.021 14.9 0.0 0.088 12.9 0.0 2.0 1 1 1 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_IclR PF09339.10 gi|240103615|ref|YP_002959924.1| - 0.027 14.3 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TonB_C PF03544.14 gi|240103615|ref|YP_002959924.1| - 0.11 12.9 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Gram-negative bacterial TonB protein C-terminal ABC_tran PF00005.27 gi|240103616|ref|YP_002959925.1| - 2.4e-33 115.6 0.0 3.7e-33 114.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|240103616|ref|YP_002959925.1| - 1.4e-13 51.4 0.1 5.6e-13 49.5 0.0 2.1 2 0 0 2 2 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|240103616|ref|YP_002959925.1| - 2.5e-08 34.0 0.4 1.1e-07 31.8 0.0 2.3 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.6 gi|240103616|ref|YP_002959925.1| - 6.6e-06 26.1 0.0 0.045 13.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|240103616|ref|YP_002959925.1| - 0.00091 19.2 0.0 0.0014 18.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|240103616|ref|YP_002959925.1| - 0.0012 19.1 0.0 0.0024 18.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|240103616|ref|YP_002959925.1| - 0.0012 18.4 0.1 0.097 12.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|240103616|ref|YP_002959925.1| - 0.0019 18.6 0.1 0.0038 17.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|240103616|ref|YP_002959925.1| - 0.002 18.5 0.1 0.047 14.1 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|240103616|ref|YP_002959925.1| - 0.01 15.6 0.0 0.02 14.6 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|240103616|ref|YP_002959925.1| - 0.011 16.2 0.1 0.026 15.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|240103616|ref|YP_002959925.1| - 0.014 15.3 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase TOBE PF03459.17 gi|240103616|ref|YP_002959925.1| - 0.017 15.4 0.1 0.05 13.9 0.1 1.8 1 0 0 1 1 1 0 TOBE domain ATPase_2 PF01637.18 gi|240103616|ref|YP_002959925.1| - 0.04 13.8 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|240103616|ref|YP_002959925.1| - 0.055 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|240103616|ref|YP_002959925.1| - 0.064 12.8 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|240103616|ref|YP_002959925.1| - 0.065 13.0 0.0 0.21 11.3 0.0 1.9 2 0 0 2 2 1 0 AAA domain G-alpha PF00503.20 gi|240103616|ref|YP_002959925.1| - 0.077 12.1 0.0 0.087 12.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_28 PF13521.6 gi|240103616|ref|YP_002959925.1| - 0.079 13.2 0.2 0.18 12.1 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|240103616|ref|YP_002959925.1| - 0.088 12.8 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|240103616|ref|YP_002959925.1| - 0.19 12.1 0.0 0.37 11.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 gi|240103617|ref|YP_002959926.1| - 2.7e-18 66.4 19.6 2.7e-18 66.4 19.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|240103618|ref|YP_002959927.1| - 1.2e-10 41.5 17.8 1.2e-10 41.5 17.8 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ac76 PF05814.11 gi|240103618|ref|YP_002959927.1| - 0.97 9.5 4.2 0.5 10.4 0.8 2.2 2 0 0 2 2 2 0 Orf76 (Ac76) SBP_bac_8 PF13416.6 gi|240103619|ref|YP_002959928.1| - 5.1e-42 144.6 1.5 7.6e-42 144.0 1.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|240103619|ref|YP_002959928.1| - 6.3e-36 124.9 6.4 6.3e-36 124.9 6.4 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|240103619|ref|YP_002959928.1| - 2.9e-08 33.4 0.1 2.7e-06 27.0 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|240103619|ref|YP_002959928.1| - 0.0034 17.1 0.0 0.058 13.1 0.0 2.8 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein GFO_IDH_MocA PF01408.22 gi|240103620|ref|YP_002959929.1| - 2.2e-21 76.9 0.0 3.1e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|240103620|ref|YP_002959929.1| - 2.9e-09 36.9 0.0 1.6e-08 34.5 0.0 2.2 2 1 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain GFO_IDH_MocA PF01408.22 gi|240103621|ref|YP_002959930.1| - 3.4e-29 102.1 0.1 6.1e-29 101.3 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|240103621|ref|YP_002959930.1| - 2.6e-07 30.6 0.0 4.7e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|240103621|ref|YP_002959930.1| - 7.1e-07 29.9 0.1 1.2e-06 29.1 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|240103621|ref|YP_002959930.1| - 0.061 13.9 0.1 0.15 12.7 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ox_reductase_C PF08635.10 gi|240103621|ref|YP_002959930.1| - 0.09 12.4 0.0 0.2 11.3 0.0 1.7 1 1 0 1 1 1 0 Putative oxidoreductase C terminal domain Glycos_transf_2 PF00535.26 gi|240103622|ref|YP_002959931.1| - 5.5e-08 32.8 0.0 8.5e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 PfkB PF00294.24 gi|240103623|ref|YP_002959932.1| - 4e-55 187.3 0.0 6.5e-55 186.6 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Fucose_iso_C PF02952.17 gi|240103624|ref|YP_002959933.1| - 1.8e-10 40.7 0.0 3e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain GDE_C PF06202.14 gi|240103625|ref|YP_002959934.1| - 3.4e-15 55.9 0.0 4.3e-14 52.2 0.0 2.1 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N_bis PF14742.6 gi|240103625|ref|YP_002959934.1| - 1e-10 41.5 0.0 8.9e-10 38.4 0.0 2.1 1 1 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes Glyco_hydro_100 PF12899.7 gi|240103625|ref|YP_002959934.1| - 1.2e-06 27.5 0.0 0.00092 18.0 0.0 2.1 2 0 0 2 2 2 2 Alkaline and neutral invertase Glyco_hydro_63 PF03200.16 gi|240103625|ref|YP_002959934.1| - 0.016 13.9 0.0 0.027 13.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 63 C-terminal domain Bac_rhamnosid6H PF17389.2 gi|240103625|ref|YP_002959934.1| - 0.068 12.4 0.0 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Glyco_hydro_130 PF04041.13 gi|240103626|ref|YP_002959935.1| - 2.7e-76 256.6 0.0 3.3e-76 256.3 0.0 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase Glyco_hydro_43 PF04616.14 gi|240103626|ref|YP_002959935.1| - 5.2e-12 45.7 0.1 3.2e-06 26.7 0.1 3.8 3 1 1 4 4 4 2 Glycosyl hydrolases family 43 Glyco_hydro_32N PF00251.20 gi|240103626|ref|YP_002959935.1| - 1.3e-08 34.7 0.0 1.9e-06 27.7 0.0 2.7 3 0 0 3 3 3 2 Glycosyl hydrolases family 32 N-terminal domain MFS_1 PF07690.16 gi|240103627|ref|YP_002959936.1| - 1.4e-31 109.7 72.4 1.7e-27 96.3 45.0 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|240103627|ref|YP_002959936.1| - 7.2e-07 28.4 20.3 6.7e-06 25.2 20.3 2.2 1 1 0 1 1 1 1 MFS_1 like family PUCC PF03209.15 gi|240103627|ref|YP_002959936.1| - 0.00066 18.8 6.6 0.00066 18.8 6.6 2.4 3 0 0 3 3 3 1 PUCC protein MFS_3 PF05977.13 gi|240103627|ref|YP_002959936.1| - 0.016 13.7 0.3 0.016 13.7 0.3 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector TauE PF01925.19 gi|240103627|ref|YP_002959936.1| - 9.7 5.7 49.0 0.57 9.8 10.9 3.1 1 1 1 3 3 3 0 Sulfite exporter TauE/SafE Lactamase_B_2 PF12706.7 gi|240103628|ref|YP_002959937.1| - 3.1e-07 30.1 0.0 5e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|240103628|ref|YP_002959937.1| - 3.8e-06 27.0 1.2 5.6e-06 26.5 0.6 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HP1451_C PF18472.1 gi|240103628|ref|YP_002959937.1| - 0.2 11.7 0.0 0.44 10.6 0.0 1.6 2 0 0 2 2 2 0 HP1451 C-terminal domain Fe-ADH PF00465.19 gi|240103629|ref|YP_002959938.1| - 1.8e-99 333.0 0.0 2e-99 332.9 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|240103629|ref|YP_002959938.1| - 6.4e-16 58.8 0.1 2.3e-07 30.8 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase MFS_1 PF07690.16 gi|240103630|ref|YP_002959939.1| - 3.1e-52 177.7 57.8 2.2e-50 171.6 43.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|240103630|ref|YP_002959939.1| - 2.5e-13 49.7 9.2 2.5e-13 49.7 9.2 2.4 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.6 gi|240103630|ref|YP_002959939.1| - 0.27 9.7 38.8 0.18 10.3 7.3 3.4 3 2 0 3 3 3 0 MFS/sugar transport protein DUF3754 PF12576.8 gi|240103630|ref|YP_002959939.1| - 0.78 9.7 5.2 19 5.2 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3754) 7TM_GPCR_Srz PF10325.9 gi|240103630|ref|YP_002959939.1| - 1 8.6 6.2 0.12 11.7 1.5 2.0 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srz DEAD PF00270.29 gi|240103631|ref|YP_002959940.1| - 2.4e-30 105.6 0.0 4.2e-28 98.3 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|240103631|ref|YP_002959940.1| - 3.6e-20 72.4 0.1 3.7e-19 69.1 0.0 2.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|240103631|ref|YP_002959940.1| - 7.5e-20 71.5 1.0 2.1e-18 66.8 0.8 2.9 2 1 0 2 2 2 1 DEAD/H associated ResIII PF04851.15 gi|240103631|ref|YP_002959940.1| - 2.5e-08 34.1 0.0 4.7e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|240103631|ref|YP_002959940.1| - 0.0003 21.1 0.0 0.013 15.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|240103631|ref|YP_002959940.1| - 0.004 16.9 0.0 0.012 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain HypA PF01155.19 gi|240103631|ref|YP_002959940.1| - 0.016 15.2 0.0 0.05 13.6 0.0 1.9 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|240103631|ref|YP_002959940.1| - 0.048 13.8 0.2 0.11 12.7 0.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain UvrD-helicase PF00580.21 gi|240103631|ref|YP_002959940.1| - 0.053 13.0 0.0 0.12 11.9 0.0 1.5 1 1 0 1 1 1 0 UvrD/REP helicase N-terminal domain AAA_22 PF13401.6 gi|240103631|ref|YP_002959940.1| - 0.064 13.5 0.1 11 6.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain zinc_ribbon_10 PF10058.9 gi|240103631|ref|YP_002959940.1| - 0.12 12.1 2.3 0.17 11.6 0.7 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein AAA_11 PF13086.6 gi|240103631|ref|YP_002959940.1| - 0.14 12.0 0.2 1.3 8.8 0.0 2.6 3 1 1 4 4 4 0 AAA domain zf-TFIIB PF13453.6 gi|240103631|ref|YP_002959940.1| - 0.18 11.2 0.8 0.4 10.0 0.8 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|240103631|ref|YP_002959940.1| - 0.23 11.5 0.6 0.9 9.6 0.6 2.0 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ogr_Delta PF04606.12 gi|240103631|ref|YP_002959940.1| - 0.48 10.4 1.1 28 4.8 0.3 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-NADH-PPase PF09297.11 gi|240103631|ref|YP_002959940.1| - 0.5 10.1 2.1 3.3 7.4 0.3 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain ATPase_2 PF01637.18 gi|240103632|ref|YP_002959941.1| - 2.8e-25 89.6 0.0 9.1e-25 87.9 0.0 1.9 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|240103632|ref|YP_002959941.1| - 3.7e-21 75.4 0.8 8.4e-21 74.3 0.8 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_22 PF13401.6 gi|240103632|ref|YP_002959941.1| - 2.7e-07 31.0 0.0 8.9e-07 29.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|240103632|ref|YP_002959941.1| - 4e-07 30.1 0.0 8e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240103632|ref|YP_002959941.1| - 9e-06 26.2 0.1 2.1e-05 24.9 0.1 1.7 1 0 0 1 1 1 1 AAA ATPase domain DUF4028 PF13220.6 gi|240103632|ref|YP_002959941.1| - 0.011 15.5 1.2 0.028 14.2 1.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4028) HTH_IclR PF09339.10 gi|240103632|ref|YP_002959941.1| - 0.065 13.0 0.0 0.24 11.2 0.0 2.0 1 0 0 1 1 1 0 IclR helix-turn-helix domain AAA PF00004.29 gi|240103632|ref|YP_002959941.1| - 0.17 12.3 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_5 PF01022.20 gi|240103632|ref|YP_002959941.1| - 0.18 11.7 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DnaB_C PF03796.15 gi|240103632|ref|YP_002959941.1| - 0.2 11.0 0.0 0.35 10.2 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DUF234 PF03008.14 gi|240103633|ref|YP_002959942.1| - 1.3e-12 48.0 0.0 2e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function UPF0102 PF02021.17 gi|240103633|ref|YP_002959942.1| - 0.004 17.4 0.1 0.0068 16.6 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 DUF3700 PF12481.8 gi|240103633|ref|YP_002959942.1| - 0.23 10.9 0.0 0.61 9.5 0.0 1.6 2 0 0 2 2 2 0 Aluminium induced protein Peptidase_M20 PF01546.28 gi|240103634|ref|YP_002959943.1| - 5.9e-25 88.2 0.1 8.5e-25 87.7 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|240103634|ref|YP_002959943.1| - 5.8e-10 39.1 0.0 1.3e-09 38.0 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 gi|240103634|ref|YP_002959943.1| - 5.9e-10 38.6 0.0 4.7e-06 25.8 0.0 2.1 2 0 0 2 2 2 2 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 gi|240103634|ref|YP_002959943.1| - 4.7e-07 29.7 0.0 3.3e-06 26.9 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M28 Acetyltransf_1 PF00583.25 gi|240103635|ref|YP_002959944.1| - 1.6e-16 60.6 1.3 3e-16 59.7 0.4 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|240103635|ref|YP_002959944.1| - 2.8e-15 56.4 0.0 5.4e-15 55.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|240103635|ref|YP_002959944.1| - 9e-13 48.5 0.0 2e-12 47.4 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|240103635|ref|YP_002959944.1| - 6.3e-08 32.5 0.0 1.3e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein PanZ PF12568.8 gi|240103635|ref|YP_002959944.1| - 1.1e-06 28.4 0.0 1.8e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|240103635|ref|YP_002959944.1| - 3.4e-05 23.9 0.0 9.1e-05 22.5 0.0 1.7 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|240103635|ref|YP_002959944.1| - 0.00034 20.7 0.0 0.0061 16.6 0.0 2.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|240103635|ref|YP_002959944.1| - 0.0068 16.6 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|240103636|ref|YP_002959945.1| - 9.7e-14 51.6 0.1 1.7e-13 50.8 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|240103636|ref|YP_002959945.1| - 2e-10 40.9 0.1 1.2e-09 38.5 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|240103636|ref|YP_002959945.1| - 4.3e-05 23.4 0.0 7.4e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|240103636|ref|YP_002959945.1| - 0.00041 20.4 0.0 0.0019 18.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|240103636|ref|YP_002959945.1| - 0.0028 17.8 0.0 0.0049 17.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|240103636|ref|YP_002959945.1| - 0.0092 15.9 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|240103636|ref|YP_002959945.1| - 0.0099 16.6 0.0 0.027 15.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|240103636|ref|YP_002959945.1| - 0.014 15.5 0.0 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|240103636|ref|YP_002959945.1| - 0.21 11.3 0.0 0.36 10.6 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ 7tm_6 PF02949.20 gi|240103637|ref|YP_002959946.1| - 0.11 11.6 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 7tm Odorant receptor SHQ1 PF04925.15 gi|240103638|ref|YP_002959947.1| - 0.0035 16.9 0.2 0.0055 16.3 0.2 1.4 1 0 0 1 1 1 1 SHQ1 protein B5 PF03484.15 gi|240103638|ref|YP_002959947.1| - 0.043 14.1 0.0 0.098 13.0 0.0 1.4 1 1 0 1 1 1 0 tRNA synthetase B5 domain PAGK PF15284.6 gi|240103638|ref|YP_002959947.1| - 0.069 13.1 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 Phage-encoded virulence factor MFS_1 PF07690.16 gi|240103639|ref|YP_002959948.1| - 9e-15 54.4 27.4 9e-15 54.4 27.4 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|240103639|ref|YP_002959948.1| - 0.0053 15.7 13.0 0.22 10.3 12.6 2.9 1 1 0 1 1 1 1 MFS_1 like family DUF4271 PF14093.6 gi|240103639|ref|YP_002959948.1| - 0.015 15.2 7.9 0.015 15.2 7.9 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4271) HTH_20 PF12840.7 gi|240103640|ref|YP_002959949.1| - 2.9e-05 24.0 0.8 0.00015 21.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|240103640|ref|YP_002959949.1| - 0.00077 19.8 0.1 0.0014 18.9 0.0 1.5 2 0 0 2 2 2 1 Penicillinase repressor HTH_11 PF08279.12 gi|240103640|ref|YP_002959949.1| - 0.0012 18.8 0.6 0.0089 16.0 0.2 2.6 2 1 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|240103640|ref|YP_002959949.1| - 0.0012 18.6 0.3 0.0097 15.8 0.1 2.4 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family HrcA_DNA-bdg PF03444.15 gi|240103640|ref|YP_002959949.1| - 0.009 15.6 0.4 0.024 14.3 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Uds1 PF15456.6 gi|240103640|ref|YP_002959949.1| - 0.064 13.4 0.1 0.092 12.9 0.1 1.3 1 1 0 1 1 1 0 Up-regulated During Septation HTH_32 PF13565.6 gi|240103640|ref|YP_002959949.1| - 0.1 13.2 0.9 0.57 10.8 0.9 2.2 1 1 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 gi|240103640|ref|YP_002959949.1| - 0.12 12.0 0.6 4.8 6.8 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding RP-C PF03428.13 gi|240103640|ref|YP_002959949.1| - 0.18 11.5 2.9 1.3 8.6 0.1 2.1 2 0 0 2 2 2 0 Replication protein C N-terminal domain Rrf2 PF02082.20 gi|240103640|ref|YP_002959949.1| - 0.18 12.2 0.7 0.38 11.1 0.1 1.8 2 1 0 2 2 2 0 Transcriptional regulator CorA PF01544.18 gi|240103641|ref|YP_002959950.1| - 2.3e-05 23.9 0.6 2.5e-05 23.7 0.6 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein MSA-2c PF12238.8 gi|240103641|ref|YP_002959950.1| - 0.0021 18.1 0.1 0.0035 17.4 0.0 1.3 1 1 0 1 1 1 1 Merozoite surface antigen 2c TipAS PF07739.13 gi|240103641|ref|YP_002959950.1| - 0.039 14.5 0.9 2.1 8.9 0.0 2.2 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain eIF-3c_N PF05470.12 gi|240103641|ref|YP_002959950.1| - 0.049 12.0 0.2 0.062 11.6 0.2 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus FliS PF02561.14 gi|240103641|ref|YP_002959950.1| - 0.085 13.1 0.8 1.8 8.9 0.1 2.2 2 0 0 2 2 2 0 Flagellar protein FliS DUF4844 PF16133.5 gi|240103641|ref|YP_002959950.1| - 0.11 13.1 1.1 0.17 12.5 0.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4844) M16C_assoc PF08367.11 gi|240103641|ref|YP_002959950.1| - 0.37 9.9 4.4 0.47 9.5 3.7 1.4 1 1 0 1 1 1 0 Peptidase M16C associated RPN6_N PF18055.1 gi|240103641|ref|YP_002959950.1| - 0.42 11.0 2.1 0.62 10.4 0.8 1.8 1 1 0 2 2 2 0 26S proteasome regulatory subunit RPN6 N-terminal domain GCIP PF13324.6 gi|240103641|ref|YP_002959950.1| - 0.51 9.9 3.5 1.5 8.3 2.9 1.8 1 1 0 1 1 1 0 Grap2 and cyclin-D-interacting GAT PF03127.14 gi|240103641|ref|YP_002959950.1| - 1.8 8.9 5.8 1.2e+02 3.0 4.4 3.1 1 1 0 1 1 1 0 GAT domain Peptidase_M1 PF01433.20 gi|240103644|ref|YP_002959953.1| - 0.00058 19.5 0.0 0.0014 18.3 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M1 domain BSP PF04450.12 gi|240103644|ref|YP_002959953.1| - 0.05 13.4 0.0 0.088 12.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase of plants and bacteria Acetyltransf_3 PF13302.7 gi|240103645|ref|YP_002959954.1| - 5e-26 92.0 0.1 6.4e-26 91.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|240103645|ref|YP_002959954.1| - 1e-15 58.2 0.0 1.1e-15 58.1 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|240103645|ref|YP_002959954.1| - 2.4e-15 56.8 0.1 3.2e-15 56.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|240103645|ref|YP_002959954.1| - 2.4e-07 30.5 0.0 4.4e-05 23.2 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|240103645|ref|YP_002959954.1| - 8.4e-05 22.9 0.1 0.00016 22.0 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|240103645|ref|YP_002959954.1| - 0.00098 19.1 0.0 0.0015 18.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|240103645|ref|YP_002959954.1| - 0.0029 17.5 0.0 0.0052 16.7 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein PDH PF02153.17 gi|240103646|ref|YP_002959955.1| - 1.5e-15 56.9 0.0 1.9e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase Aminotran_1_2 PF00155.21 gi|240103647|ref|YP_002959956.1| - 7.8e-40 137.2 0.0 8.8e-40 137.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|240103647|ref|YP_002959956.1| - 1.9e-05 23.7 0.0 3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|240103647|ref|YP_002959956.1| - 0.042 12.4 0.0 0.52 8.8 0.0 2.1 1 1 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme CM_2 PF01817.21 gi|240103648|ref|YP_002959957.1| - 1.2e-16 60.8 5.4 1.6e-16 60.4 5.4 1.2 1 0 0 1 1 1 1 Chorismate mutase type II Chorismate_synt PF01264.21 gi|240103649|ref|YP_002959958.1| - 1.2e-124 415.4 0.0 1.3e-124 415.2 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.20 gi|240103650|ref|YP_002959959.1| - 1e-101 340.7 0.0 1.1e-101 340.5 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GHMP_kinases_N PF00288.26 gi|240103651|ref|YP_002959960.1| - 5.5e-14 52.1 2.0 5.5e-14 52.1 2.0 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|240103651|ref|YP_002959960.1| - 0.28 11.6 3.0 0.68 10.3 0.0 2.6 3 0 0 3 3 3 0 GHMP kinases C terminal Shikimate_dh_N PF08501.11 gi|240103652|ref|YP_002959961.1| - 7.5e-31 106.2 0.0 1.6e-30 105.2 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|240103652|ref|YP_002959961.1| - 3.6e-15 55.4 0.2 7.7e-15 54.4 0.2 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|240103652|ref|YP_002959961.1| - 3.4e-12 46.6 0.0 5.1e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|240103652|ref|YP_002959961.1| - 1.5e-06 28.5 0.0 5.3e-06 26.7 0.0 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|240103652|ref|YP_002959961.1| - 2.1e-05 23.9 0.2 4.7e-05 22.8 0.1 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|240103652|ref|YP_002959961.1| - 5.3e-05 22.7 0.0 8.5e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|240103652|ref|YP_002959961.1| - 9.4e-05 22.9 0.0 0.00016 22.2 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|240103652|ref|YP_002959961.1| - 0.0002 21.6 0.0 0.00047 20.4 0.0 1.8 2 0 0 2 2 1 1 TrkA-N domain ApbA PF02558.16 gi|240103652|ref|YP_002959961.1| - 0.00025 20.7 0.0 0.0004 20.0 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DUF1188 PF06690.11 gi|240103652|ref|YP_002959961.1| - 0.0016 18.0 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) THF_DHG_CYH_C PF02882.19 gi|240103652|ref|YP_002959961.1| - 0.0026 17.1 0.0 0.0087 15.4 0.0 1.7 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_7 PF13241.6 gi|240103652|ref|YP_002959961.1| - 0.0049 17.3 0.0 0.0077 16.6 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.24 gi|240103652|ref|YP_002959961.1| - 0.0054 16.4 0.0 0.0069 16.0 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_10 PF13460.6 gi|240103652|ref|YP_002959961.1| - 0.0083 16.0 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding FAD_binding_3 PF01494.19 gi|240103652|ref|YP_002959961.1| - 0.038 13.2 0.0 0.051 12.8 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.17 gi|240103652|ref|YP_002959961.1| - 0.047 12.9 0.3 0.11 11.8 0.1 1.6 2 0 0 2 2 2 0 Thi4 family FMO-like PF00743.19 gi|240103652|ref|YP_002959961.1| - 0.048 12.1 0.1 0.14 10.5 0.0 1.6 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like NAD_binding_8 PF13450.6 gi|240103652|ref|YP_002959961.1| - 0.064 13.5 0.8 0.62 10.3 0.2 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain PglD_N PF17836.1 gi|240103652|ref|YP_002959961.1| - 0.068 13.8 0.0 0.13 12.9 0.0 1.5 1 0 0 1 1 1 0 PglD N-terminal domain Pyr_redox_3 PF13738.6 gi|240103652|ref|YP_002959961.1| - 0.093 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GARS_N PF02844.15 gi|240103652|ref|YP_002959961.1| - 0.098 13.5 0.0 0.16 12.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain G_glu_transpept PF01019.21 gi|240103652|ref|YP_002959961.1| - 0.16 10.7 0.0 0.22 10.2 0.0 1.1 1 0 0 1 1 1 0 Gamma-glutamyltranspeptidase FAD_binding_2 PF00890.24 gi|240103652|ref|YP_002959961.1| - 0.27 10.3 2.3 0.74 8.8 2.2 1.8 1 1 1 2 2 2 0 FAD binding domain DHquinase_I PF01487.15 gi|240103653|ref|YP_002959962.1| - 3.3e-52 178.0 0.0 4e-52 177.7 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DHQ_synthase PF01761.20 gi|240103654|ref|YP_002959963.1| - 3.2e-83 278.9 0.0 3.9e-83 278.6 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|240103654|ref|YP_002959963.1| - 7e-06 25.9 0.0 2.2e-05 24.3 0.0 1.8 1 1 0 2 2 2 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|240103654|ref|YP_002959963.1| - 0.00048 19.1 0.1 0.016 14.1 0.0 2.3 2 1 0 2 2 2 2 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.20 gi|240103655|ref|YP_002959964.1| - 1.1e-76 257.3 0.0 1.4e-76 257.0 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|240103655|ref|YP_002959964.1| - 9.7e-06 25.2 0.0 3.7e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 NeuB family ComA PF02679.15 gi|240103655|ref|YP_002959964.1| - 0.022 14.2 0.0 0.067 12.6 0.0 1.7 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) Transket_pyr PF02779.24 gi|240103656|ref|YP_002959965.1| - 5.1e-37 127.2 0.3 1.1e-36 126.1 0.1 1.6 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|240103656|ref|YP_002959965.1| - 1.2e-31 109.1 1.5 1.9e-31 108.5 0.3 2.0 2 0 0 2 2 2 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|240103656|ref|YP_002959965.1| - 1.6e-06 28.3 1.0 1.2e-05 25.6 0.3 2.2 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Spore_YhaL PF14147.6 gi|240103656|ref|YP_002959965.1| - 0.06 13.1 0.1 7 6.4 0.1 2.4 2 0 0 2 2 2 0 Sporulation protein YhaL Transketolase_N PF00456.21 gi|240103657|ref|YP_002959966.1| - 1.5e-29 103.0 0.0 3e-29 102.0 0.0 1.4 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.21 gi|240103657|ref|YP_002959966.1| - 1e-07 31.9 0.1 4.3e-07 29.8 0.1 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 gi|240103657|ref|YP_002959966.1| - 3.8e-07 29.4 0.0 7.5e-07 28.4 0.0 1.5 2 0 0 2 2 2 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|240103657|ref|YP_002959966.1| - 1e-06 28.2 0.0 1.1e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase XFP_N PF09364.10 gi|240103657|ref|YP_002959966.1| - 0.00018 20.4 0.0 0.00024 20.0 0.0 1.2 1 1 0 1 1 1 1 XFP N-terminal domain TIR_2 PF13676.6 gi|240103657|ref|YP_002959966.1| - 0.026 15.1 0.0 0.12 13.0 0.0 2.0 2 1 0 2 2 2 0 TIR domain NIL PF09383.10 gi|240103657|ref|YP_002959966.1| - 0.12 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 NIL domain HisKA PF00512.25 gi|240103658|ref|YP_002959967.1| - 0.014 15.4 4.0 1.3 9.1 1.7 2.1 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain HTH_27 PF13463.6 gi|240103658|ref|YP_002959967.1| - 0.018 15.6 0.1 0.028 14.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PmbA_TldD PF01523.16 gi|240103660|ref|YP_002959969.1| - 2e-09 37.7 0.3 2.4e-09 37.4 0.3 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF4239 PF14023.6 gi|240103660|ref|YP_002959969.1| - 0.02 14.6 0.1 3 7.5 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF4239) MFS_1 PF07690.16 gi|240103661|ref|YP_002959970.1| - 8.9e-13 47.9 29.8 8.9e-13 47.9 29.8 1.6 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|240103661|ref|YP_002959970.1| - 0.097 11.0 17.4 0.034 12.5 4.8 2.3 2 0 0 2 2 2 0 Transmembrane secretion effector MFS_1_like PF12832.7 gi|240103661|ref|YP_002959970.1| - 3.2 6.5 15.2 15 4.3 15.0 2.2 1 1 0 1 1 1 0 MFS_1 like family CN_hydrolase PF00795.22 gi|240103662|ref|YP_002959971.1| - 2.8e-14 53.1 0.0 3.4e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase tRNA-synt_His PF13393.6 gi|240103663|ref|YP_002959972.1| - 4.7e-28 98.4 0.0 5.3e-12 45.6 0.0 3.0 2 1 1 3 3 3 3 Histidyl-tRNA synthetase HisG PF01634.18 gi|240103664|ref|YP_002959973.1| - 2.4e-51 173.9 0.0 3e-51 173.6 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase Histidinol_dh PF00815.20 gi|240103665|ref|YP_002959974.1| - 9.3e-134 446.5 0.0 7.3e-94 315.1 0.0 2.0 1 1 1 2 2 2 2 Histidinol dehydrogenase CHMI PF02962.15 gi|240103665|ref|YP_002959974.1| - 0.15 12.4 0.0 0.33 11.3 0.0 1.6 1 1 0 1 1 1 0 5-carboxymethyl-2-hydroxymuconate isomerase IGPD PF00475.18 gi|240103666|ref|YP_002959975.1| - 8.2e-39 133.2 0.0 9.8e-39 132.9 0.0 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase GATase PF00117.28 gi|240103667|ref|YP_002959976.1| - 1.2e-19 70.8 0.0 1.5e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|240103667|ref|YP_002959976.1| - 0.00039 20.1 0.0 0.00055 19.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|240103667|ref|YP_002959976.1| - 0.00048 19.9 0.3 0.041 13.6 0.0 2.3 2 0 0 2 2 2 2 Peptidase C26 His_biosynth PF00977.21 gi|240103668|ref|YP_002959977.1| - 8.2e-54 182.5 0.6 9.4e-54 182.3 0.6 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|240103668|ref|YP_002959977.1| - 0.0078 15.7 1.0 0.066 12.7 0.2 2.0 2 0 0 2 2 2 1 PcrB family FMN_dh PF01070.18 gi|240103668|ref|YP_002959977.1| - 0.11 11.5 0.0 0.41 9.6 0.0 1.5 1 1 0 1 1 1 0 FMN-dependent dehydrogenase IGPS PF00218.21 gi|240103668|ref|YP_002959977.1| - 0.16 11.1 0.0 0.77 8.9 0.0 1.9 2 1 1 3 3 3 0 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|240103669|ref|YP_002959978.1| - 2.8e-88 295.3 0.9 3.1e-88 295.1 0.9 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|240103669|ref|YP_002959978.1| - 5.9e-09 35.6 0.1 0.0011 18.4 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|240103669|ref|YP_002959978.1| - 1.1e-07 31.6 2.2 2.5e-05 23.8 0.6 2.4 2 1 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 gi|240103669|ref|YP_002959978.1| - 3.3e-07 29.7 0.1 2.4e-05 23.6 0.1 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) IMPDH PF00478.25 gi|240103669|ref|YP_002959978.1| - 1.9e-06 27.1 0.7 0.035 13.1 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|240103669|ref|YP_002959978.1| - 3e-06 26.7 0.3 0.047 13.0 0.0 2.4 2 1 0 2 2 2 2 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|240103669|ref|YP_002959978.1| - 4.4e-05 23.0 0.1 0.05 13.0 0.0 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|240103669|ref|YP_002959978.1| - 0.00026 20.3 0.2 0.63 9.2 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase FMN_dh PF01070.18 gi|240103669|ref|YP_002959978.1| - 0.00054 19.1 2.1 0.021 13.9 2.0 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Trp_syntA PF00290.20 gi|240103669|ref|YP_002959978.1| - 0.0056 15.5 0.1 0.011 14.6 0.1 1.4 1 0 0 1 1 1 1 Tryptophan synthase alpha chain SAP PF02037.27 gi|240103669|ref|YP_002959978.1| - 0.0069 16.1 0.0 0.052 13.3 0.0 2.3 2 0 0 2 2 2 1 SAP domain PcrB PF01884.17 gi|240103669|ref|YP_002959978.1| - 0.011 15.3 0.9 0.013 14.9 0.2 1.5 2 0 0 2 2 2 0 PcrB family Radical_SAM PF04055.21 gi|240103669|ref|YP_002959978.1| - 0.037 14.4 0.6 0.57 10.5 0.3 2.1 2 1 0 2 2 2 0 Radical SAM superfamily PRA-CH PF01502.18 gi|240103670|ref|YP_002959979.1| - 4.7e-31 106.4 0.1 7.4e-31 105.8 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PRA-PH PF01503.17 gi|240103670|ref|YP_002959979.1| - 1.4e-15 57.5 0.3 2.1e-15 56.9 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Robl_LC7 PF03259.17 gi|240103670|ref|YP_002959979.1| - 0.061 13.1 0.1 3.7 7.4 0.0 2.2 2 0 0 2 2 2 0 Roadblock/LC7 domain Aminotran_1_2 PF00155.21 gi|240103671|ref|YP_002959980.1| - 3.7e-52 177.7 0.0 4.7e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|240103671|ref|YP_002959980.1| - 4.9e-05 22.4 0.0 6.3e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Allinase Aminotran_5 PF00266.19 gi|240103671|ref|YP_002959980.1| - 0.0014 17.6 0.0 0.0022 17.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DEK_C PF08766.11 gi|240103671|ref|YP_002959980.1| - 0.075 13.0 0.1 1 9.3 0.4 2.5 3 0 0 3 3 3 0 DEK C terminal domain Peptidase_S77 PF03420.13 gi|240103671|ref|YP_002959980.1| - 0.15 11.7 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Prohead core protein serine protease HAD_2 PF13419.6 gi|240103672|ref|YP_002959981.1| - 2.2e-05 24.6 0.0 0.11 12.6 0.0 2.6 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|240103672|ref|YP_002959981.1| - 0.00027 21.4 0.4 0.0059 17.0 0.4 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240103672|ref|YP_002959981.1| - 0.0011 19.3 0.1 0.093 13.0 0.1 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase P5CR_dimer PF14748.6 gi|240103673|ref|YP_002959982.1| - 7.7e-36 122.5 0.5 1.3e-35 121.8 0.1 1.6 2 0 0 2 2 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|240103673|ref|YP_002959982.1| - 1.4e-22 80.1 3.1 3.2e-22 78.9 3.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|240103673|ref|YP_002959982.1| - 2.3e-12 47.4 0.4 4.6e-12 46.4 0.4 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|240103673|ref|YP_002959982.1| - 7.4e-10 38.7 3.0 3.1e-09 36.6 1.9 2.4 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|240103673|ref|YP_002959982.1| - 9.5e-09 35.4 4.0 2.4e-06 27.6 4.0 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.12 gi|240103673|ref|YP_002959982.1| - 7.7e-08 32.1 0.4 1.1e-07 31.5 0.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain PDH PF02153.17 gi|240103673|ref|YP_002959982.1| - 1.7e-07 30.5 1.1 2.8e-07 29.8 1.1 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|240103673|ref|YP_002959982.1| - 1.8e-07 30.7 0.2 3.2e-07 29.9 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|240103673|ref|YP_002959982.1| - 1.6e-06 28.3 0.5 2.8e-06 27.4 0.5 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.21 gi|240103673|ref|YP_002959982.1| - 2.7e-06 27.0 0.1 3.9e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|240103673|ref|YP_002959982.1| - 1.2e-05 25.3 1.0 1.2e-05 25.3 1.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|240103673|ref|YP_002959982.1| - 1.2e-05 25.2 1.1 2.1e-05 24.5 1.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Rossmann-like PF10727.9 gi|240103673|ref|YP_002959982.1| - 3.2e-05 23.8 1.9 5.3e-05 23.1 1.9 1.5 1 0 0 1 1 1 1 Rossmann-like domain CoA_binding_2 PF13380.6 gi|240103673|ref|YP_002959982.1| - 4.8e-05 23.8 1.2 0.0002 21.8 0.8 2.0 2 0 0 2 2 2 1 CoA binding domain DapB_N PF01113.20 gi|240103673|ref|YP_002959982.1| - 0.00013 22.1 1.1 0.00025 21.2 1.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|240103673|ref|YP_002959982.1| - 0.00019 21.7 0.5 0.00033 20.9 0.5 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|240103673|ref|YP_002959982.1| - 0.0002 21.6 1.2 0.00052 20.2 1.2 1.8 1 1 0 1 1 1 1 TrkA-N domain NmrA PF05368.13 gi|240103673|ref|YP_002959982.1| - 0.00036 20.1 1.3 0.00081 19.0 1.3 1.6 1 0 0 1 1 1 1 NmrA-like family UDPG_MGDP_dh_C PF03720.15 gi|240103673|ref|YP_002959982.1| - 0.00072 19.9 0.1 0.0015 18.9 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GFO_IDH_MocA PF01408.22 gi|240103673|ref|YP_002959982.1| - 0.001 19.9 0.1 0.0023 18.7 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.26 gi|240103673|ref|YP_002959982.1| - 0.0036 17.3 1.2 0.0091 16.0 1.2 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase adh_short PF00106.25 gi|240103673|ref|YP_002959982.1| - 0.0039 16.7 2.4 0.016 14.6 2.2 2.0 1 1 0 1 1 1 1 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|240103673|ref|YP_002959982.1| - 0.005 16.4 2.5 0.35 10.4 0.4 2.3 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UPF0146 PF03686.13 gi|240103673|ref|YP_002959982.1| - 0.013 15.3 1.4 0.022 14.6 1.4 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) OCD_Mu_crystall PF02423.15 gi|240103673|ref|YP_002959982.1| - 0.016 14.2 0.3 0.026 13.5 0.3 1.4 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family AlaDh_PNT_C PF01262.21 gi|240103673|ref|YP_002959982.1| - 0.016 14.5 2.1 0.025 13.8 2.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.15 gi|240103673|ref|YP_002959982.1| - 0.047 14.0 0.2 0.085 13.2 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, N-terminal domain NAD_binding_7 PF13241.6 gi|240103673|ref|YP_002959982.1| - 0.053 14.0 1.8 0.1 13.1 1.5 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding QRPTase_C PF01729.19 gi|240103673|ref|YP_002959982.1| - 0.057 13.2 0.4 0.12 12.1 0.4 1.5 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain adh_short_C2 PF13561.6 gi|240103673|ref|YP_002959982.1| - 0.059 12.9 1.1 0.11 12.0 1.1 1.5 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase NAD_binding_8 PF13450.6 gi|240103673|ref|YP_002959982.1| - 0.062 13.5 1.8 0.53 10.6 1.0 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain OCC1 PF15506.6 gi|240103673|ref|YP_002959982.1| - 0.077 13.1 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 OCC1 family XdhC_C PF13478.6 gi|240103673|ref|YP_002959982.1| - 0.089 13.3 0.1 0.13 12.7 0.2 1.5 1 1 0 1 1 1 0 XdhC Rossmann domain PglD_N PF17836.1 gi|240103673|ref|YP_002959982.1| - 0.099 13.3 0.2 0.21 12.3 0.2 1.6 1 0 0 1 1 1 0 PglD N-terminal domain DUF4929 PF16283.5 gi|240103673|ref|YP_002959982.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4929) TIR_2 PF13676.6 gi|240103673|ref|YP_002959982.1| - 0.14 12.8 0.0 0.32 11.6 0.0 1.6 1 0 0 1 1 1 0 TIR domain Pyr_redox PF00070.27 gi|240103673|ref|YP_002959982.1| - 0.2 12.2 3.5 0.35 11.5 1.5 2.5 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|240103673|ref|YP_002959982.1| - 0.35 10.2 2.9 0.46 9.8 1.7 1.7 1 1 1 2 2 2 0 ThiF family Pyr_redox_2 PF07992.14 gi|240103673|ref|YP_002959982.1| - 0.49 9.6 4.0 0.65 9.2 1.9 2.0 1 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Phage_integr_3 PF16795.5 gi|240103674|ref|YP_002959983.1| - 8.2e-28 97.3 0.1 1.6e-27 96.4 0.1 1.5 1 0 0 1 1 1 1 Archaeal phage integrase V-ATPase_H_N PF03224.14 gi|240103674|ref|YP_002959983.1| - 0.0045 16.3 1.5 0.0077 15.6 1.5 1.4 1 1 0 1 1 1 1 V-ATPase subunit H CtsR_C PF17727.1 gi|240103674|ref|YP_002959983.1| - 0.0099 16.0 0.3 0.17 12.1 0.2 2.5 1 1 1 2 2 2 1 CtsR C-terminal dimerization domain HBD PF18534.1 gi|240103674|ref|YP_002959983.1| - 0.026 14.6 0.5 0.026 14.6 0.5 1.8 2 0 0 2 2 2 0 Helical bundle domain CARD PF00619.21 gi|240103674|ref|YP_002959983.1| - 0.042 13.9 1.1 0.13 12.3 0.1 2.3 3 0 0 3 3 3 0 Caspase recruitment domain SHOCT PF09851.9 gi|240103674|ref|YP_002959983.1| - 0.17 11.7 1.0 0.57 10.0 1.0 2.0 1 0 0 1 1 1 0 Short C-terminal domain ATPase_2 PF01637.18 gi|240103676|ref|YP_002959985.1| - 1.9e-16 60.7 0.1 1.9e-16 60.7 0.1 1.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|240103676|ref|YP_002959985.1| - 1.4e-09 38.0 0.9 1.9e-08 34.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|240103676|ref|YP_002959985.1| - 1.1e-06 29.1 0.0 5.4e-06 26.9 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|240103676|ref|YP_002959985.1| - 1e-05 25.8 0.0 2.1e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|240103676|ref|YP_002959985.1| - 0.0019 17.7 0.1 0.023 14.2 0.2 2.2 1 1 0 2 2 2 1 PhoH-like protein AAA PF00004.29 gi|240103676|ref|YP_002959985.1| - 0.0046 17.4 0.8 0.011 16.1 0.1 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SNF2_N PF00176.23 gi|240103676|ref|YP_002959985.1| - 0.0095 14.7 0.0 0.0095 14.7 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF4473 PF14747.6 gi|240103676|ref|YP_002959985.1| - 0.044 14.3 0.2 0.86 10.2 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) NACHT PF05729.12 gi|240103676|ref|YP_002959985.1| - 0.063 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|240103676|ref|YP_002959985.1| - 0.11 13.1 0.4 0.37 11.3 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|240103676|ref|YP_002959985.1| - 0.13 12.2 0.1 0.37 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|240103677|ref|YP_002959986.1| - 4.5e-06 26.7 0.3 6.2e-05 23.0 0.3 2.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|240103677|ref|YP_002959986.1| - 8.9e-05 22.8 0.0 0.00053 20.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|240103677|ref|YP_002959986.1| - 0.0079 16.1 0.2 0.014 15.3 0.2 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|240103677|ref|YP_002959986.1| - 0.018 15.4 0.0 0.045 14.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Spore_IV_A PF09547.10 gi|240103677|ref|YP_002959986.1| - 0.022 13.7 0.0 0.038 12.9 0.0 1.4 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) AAA_16 PF13191.6 gi|240103677|ref|YP_002959986.1| - 0.038 14.4 0.0 0.18 12.2 0.0 2.1 1 1 0 1 1 1 0 AAA ATPase domain Resolvase PF00239.21 gi|240103678|ref|YP_002959987.1| - 4.9e-38 130.5 0.8 6.4e-38 130.1 0.3 1.4 2 0 0 2 2 1 1 Resolvase, N terminal domain HTH_38 PF13936.6 gi|240103678|ref|YP_002959987.1| - 1.3e-10 40.8 0.0 4.2e-10 39.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|240103678|ref|YP_002959987.1| - 3.6e-10 39.8 0.1 1.3e-09 38.0 0.1 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_Crp_2 PF13545.6 gi|240103678|ref|YP_002959987.1| - 8.3e-10 38.5 0.3 2.9e-09 36.7 0.2 2.0 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|240103678|ref|YP_002959987.1| - 2.4e-09 36.9 0.2 6.5e-09 35.6 0.0 1.8 2 0 0 2 2 1 1 MarR family HTH_23 PF13384.6 gi|240103678|ref|YP_002959987.1| - 9.7e-09 34.8 0.1 4.4e-08 32.7 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain MarR PF01047.22 gi|240103678|ref|YP_002959987.1| - 1.8e-08 34.2 0.4 6.4e-08 32.4 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_29 PF13551.6 gi|240103678|ref|YP_002959987.1| - 1.9e-08 34.2 0.9 2.7e-06 27.3 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_24 PF13412.6 gi|240103678|ref|YP_002959987.1| - 4e-08 32.7 1.4 1.8e-07 30.6 0.1 2.6 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|240103678|ref|YP_002959987.1| - 2.6e-07 30.4 0.1 3.2e-06 26.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|240103678|ref|YP_002959987.1| - 2.9e-07 30.5 2.8 3.6e-07 30.2 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|240103678|ref|YP_002959987.1| - 4.5e-07 29.8 0.2 5.4e-06 26.4 0.0 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|240103678|ref|YP_002959987.1| - 1.2e-06 28.3 3.3 3.3e-05 23.7 0.9 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|240103678|ref|YP_002959987.1| - 3.2e-06 26.7 0.1 6.5e-06 25.7 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|240103678|ref|YP_002959987.1| - 7.2e-06 26.1 0.8 1.7e-05 24.9 0.2 1.9 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.6 gi|240103678|ref|YP_002959987.1| - 1.8e-05 25.1 0.2 5.3e-05 23.6 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|240103678|ref|YP_002959987.1| - 1.8e-05 24.5 1.2 6.9e-05 22.7 0.1 2.4 2 0 0 2 2 2 1 HTH domain HTH_32 PF13565.6 gi|240103678|ref|YP_002959987.1| - 3.9e-05 24.2 0.2 0.00032 21.2 0.3 2.2 2 0 0 2 2 2 1 Homeodomain-like domain Crp PF00325.20 gi|240103678|ref|YP_002959987.1| - 4e-05 23.2 0.1 9.5e-05 22.0 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family Sigma70_r4 PF04545.16 gi|240103678|ref|YP_002959987.1| - 4.7e-05 22.8 2.3 5.1e-05 22.7 0.1 2.2 2 1 1 3 3 2 1 Sigma-70, region 4 Rrf2 PF02082.20 gi|240103678|ref|YP_002959987.1| - 4.7e-05 23.6 0.5 0.00019 21.7 0.1 2.1 2 0 0 2 2 2 1 Transcriptional regulator HxlR PF01638.17 gi|240103678|ref|YP_002959987.1| - 8.4e-05 22.3 0.8 0.011 15.6 0.5 2.5 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_36 PF13730.6 gi|240103678|ref|YP_002959987.1| - 8.7e-05 22.4 0.1 0.00084 19.3 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|240103678|ref|YP_002959987.1| - 0.00012 22.5 0.3 0.0004 20.8 0.1 2.0 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_3 PF01381.22 gi|240103678|ref|YP_002959987.1| - 0.00021 21.3 0.1 0.00073 19.5 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix B-block_TFIIIC PF04182.12 gi|240103678|ref|YP_002959987.1| - 0.00034 20.7 0.1 0.00075 19.6 0.1 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC TnsD PF15978.5 gi|240103678|ref|YP_002959987.1| - 0.00066 18.8 0.8 0.00099 18.2 0.8 1.3 1 0 0 1 1 1 1 Tn7-like transposition protein D LexA_DNA_bind PF01726.16 gi|240103678|ref|YP_002959987.1| - 0.0014 18.3 0.2 0.0038 17.0 0.2 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_IclR PF09339.10 gi|240103678|ref|YP_002959987.1| - 0.0016 18.2 0.1 0.0042 16.9 0.0 1.8 2 0 0 2 2 1 1 IclR helix-turn-helix domain GerE PF00196.19 gi|240103678|ref|YP_002959987.1| - 0.0018 17.7 0.1 0.0038 16.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family CENP-B_N PF04218.13 gi|240103678|ref|YP_002959987.1| - 0.002 17.7 0.8 0.0056 16.3 0.0 2.1 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Trp_repressor PF01371.19 gi|240103678|ref|YP_002959987.1| - 0.0031 17.6 0.4 0.011 15.8 0.1 2.1 2 0 0 2 2 1 1 Trp repressor protein TFIIE_alpha PF02002.17 gi|240103678|ref|YP_002959987.1| - 0.0038 17.1 0.4 0.011 15.5 0.4 1.8 1 0 0 1 1 1 1 TFIIE alpha subunit Phage_antitermQ PF06530.12 gi|240103678|ref|YP_002959987.1| - 0.0041 17.0 0.0 0.0094 15.9 0.0 1.6 1 0 0 1 1 1 1 Phage antitermination protein Q GntR PF00392.21 gi|240103678|ref|YP_002959987.1| - 0.0054 16.3 0.1 0.012 15.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 gi|240103678|ref|YP_002959987.1| - 0.0063 16.3 0.7 0.022 14.6 0.1 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.12 gi|240103678|ref|YP_002959987.1| - 0.0086 15.8 0.6 0.021 14.6 0.0 1.9 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|240103678|ref|YP_002959987.1| - 0.0091 15.4 0.0 0.02 14.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_IS630 PF01710.16 gi|240103678|ref|YP_002959987.1| - 0.011 15.8 3.7 0.015 15.4 0.5 2.5 2 1 1 3 3 3 0 Transposase Sigma70_ECF PF07638.11 gi|240103678|ref|YP_002959987.1| - 0.019 14.9 0.1 0.042 13.7 0.1 1.6 1 0 0 1 1 1 0 ECF sigma factor RNA_pol_Rpc34 PF05158.12 gi|240103678|ref|YP_002959987.1| - 0.02 14.3 1.4 0.049 13.0 1.4 1.5 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_31 PF13560.6 gi|240103678|ref|YP_002959987.1| - 0.022 15.1 0.0 0.043 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.11 gi|240103678|ref|YP_002959987.1| - 0.023 15.3 0.1 0.17 12.6 0.0 2.3 3 0 0 3 3 1 0 Replication protein A C terminal Terminase_5 PF06056.12 gi|240103678|ref|YP_002959987.1| - 0.027 14.3 0.1 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_Tnp_1 PF01527.20 gi|240103678|ref|YP_002959987.1| - 0.029 14.7 0.1 0.068 13.5 0.1 1.6 1 0 0 1 1 1 0 Transposase RuvB_N PF05496.12 gi|240103678|ref|YP_002959987.1| - 0.035 13.8 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain IF2_N PF04760.15 gi|240103678|ref|YP_002959987.1| - 0.038 13.8 0.5 8.1 6.3 0.1 2.6 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region RepL PF05732.11 gi|240103678|ref|YP_002959987.1| - 0.043 13.2 0.4 0.043 13.2 0.4 1.9 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) RTP PF02334.16 gi|240103678|ref|YP_002959987.1| - 0.061 14.0 1.9 0.24 12.1 0.3 2.4 2 0 0 2 2 2 0 Replication terminator protein Peptidase_M32 PF02074.15 gi|240103678|ref|YP_002959987.1| - 0.079 11.7 1.0 4 6.1 0.2 2.1 2 0 0 2 2 2 0 Carboxypeptidase Taq (M32) metallopeptidase PAX PF00292.18 gi|240103678|ref|YP_002959987.1| - 0.1 12.5 0.2 0.36 10.8 0.1 1.9 2 1 1 3 3 1 0 'Paired box' domain DUF2250 PF10007.9 gi|240103678|ref|YP_002959987.1| - 0.11 12.7 1.1 0.29 11.3 1.1 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) EAP30 PF04157.16 gi|240103678|ref|YP_002959987.1| - 0.11 11.8 0.9 0.5 9.6 0.9 2.2 1 1 0 1 1 1 0 EAP30/Vps36 family Suppressor_APC PF11414.8 gi|240103679|ref|YP_002959988.1| - 0.00019 21.4 5.6 0.00019 21.4 5.6 1.8 1 1 1 2 2 2 1 Adenomatous polyposis coli tumour suppressor protein Phage_Mu_Gam PF07352.12 gi|240103679|ref|YP_002959988.1| - 0.0025 17.7 9.8 0.0055 16.6 9.8 1.6 1 1 0 1 1 1 1 Bacteriophage Mu Gam like protein FlaC_arch PF05377.11 gi|240103679|ref|YP_002959988.1| - 0.003 17.9 5.4 0.0037 17.6 2.7 2.0 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) DUF3375 PF11855.8 gi|240103679|ref|YP_002959988.1| - 0.0063 15.5 3.1 0.0063 15.5 3.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3375) LCD1 PF09798.9 gi|240103679|ref|YP_002959988.1| - 0.0077 14.8 7.0 0.008 14.7 7.0 1.0 1 0 0 1 1 1 1 DNA damage checkpoint protein Dynamitin PF04912.14 gi|240103679|ref|YP_002959988.1| - 0.0096 15.3 6.4 0.01 15.2 6.4 1.1 1 0 0 1 1 1 1 Dynamitin TolA_bind_tri PF16331.5 gi|240103679|ref|YP_002959988.1| - 0.011 15.8 6.2 0.38 10.9 2.0 2.6 2 1 1 3 3 3 0 TolA binding protein trimerisation DUF1192 PF06698.11 gi|240103679|ref|YP_002959988.1| - 0.012 15.6 2.2 0.012 15.6 2.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) PI3K_P85_iSH2 PF16454.5 gi|240103679|ref|YP_002959988.1| - 0.021 14.4 2.8 0.021 14.4 2.8 2.0 2 0 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF2721 PF11026.8 gi|240103679|ref|YP_002959988.1| - 0.021 14.7 1.1 0.13 12.2 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) STAT_alpha PF01017.20 gi|240103679|ref|YP_002959988.1| - 0.027 14.4 5.2 0.033 14.1 5.2 1.1 1 0 0 1 1 1 0 STAT protein, all-alpha domain DUF4140 PF13600.6 gi|240103679|ref|YP_002959988.1| - 0.039 14.4 5.3 0.37 11.3 1.5 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF16 PF01519.16 gi|240103679|ref|YP_002959988.1| - 0.042 14.3 6.7 0.12 12.9 4.1 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 SpoOE-like PF09388.10 gi|240103679|ref|YP_002959988.1| - 0.046 13.6 1.8 0.046 13.6 1.8 2.1 2 0 0 2 2 2 0 Spo0E like sporulation regulatory protein ADIP PF11559.8 gi|240103679|ref|YP_002959988.1| - 0.049 13.7 9.9 0.44 10.6 9.9 1.9 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding ABC_tran_CTD PF16326.5 gi|240103679|ref|YP_002959988.1| - 0.063 13.5 11.1 0.065 13.5 4.2 2.3 1 1 0 2 2 2 0 ABC transporter C-terminal domain TBK1_CCD1 PF18394.1 gi|240103679|ref|YP_002959988.1| - 0.064 12.8 5.9 0.065 12.8 5.9 1.0 1 0 0 1 1 1 0 TANK-binding kinase 1 coiled-coil domain 1 SOGA PF11365.8 gi|240103679|ref|YP_002959988.1| - 0.064 14.4 5.3 0.12 13.5 4.7 1.7 1 1 0 1 1 1 0 Protein SOGA Fmp27_WPPW PF10359.9 gi|240103679|ref|YP_002959988.1| - 0.077 11.8 5.5 0.11 11.3 5.5 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Remorin_C PF03763.13 gi|240103679|ref|YP_002959988.1| - 0.089 12.7 14.1 0.11 12.4 6.7 2.3 1 1 1 2 2 2 0 Remorin, C-terminal region DUF4164 PF13747.6 gi|240103679|ref|YP_002959988.1| - 0.16 12.2 8.0 1.9 8.8 0.2 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) Paralemmin PF03285.15 gi|240103679|ref|YP_002959988.1| - 0.18 11.4 4.7 0.2 11.2 4.7 1.1 1 0 0 1 1 1 0 Paralemmin FlxA PF14282.6 gi|240103679|ref|YP_002959988.1| - 0.18 11.8 10.0 4.2 7.4 10.0 2.0 1 1 0 1 1 1 0 FlxA-like protein XhlA PF10779.9 gi|240103679|ref|YP_002959988.1| - 0.19 11.9 12.4 0.13 12.5 5.6 2.3 2 0 0 2 2 2 0 Haemolysin XhlA TMPIT PF07851.13 gi|240103679|ref|YP_002959988.1| - 0.21 10.8 7.4 0.25 10.5 7.4 1.1 1 0 0 1 1 1 0 TMPIT-like protein Swi5 PF07061.11 gi|240103679|ref|YP_002959988.1| - 0.23 11.6 5.8 0.21 11.7 0.8 2.2 2 0 0 2 2 2 0 Swi5 CLZ PF16526.5 gi|240103679|ref|YP_002959988.1| - 0.23 11.8 9.3 0.16 12.4 2.9 2.2 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Wtap PF17098.5 gi|240103679|ref|YP_002959988.1| - 0.24 11.3 5.8 0.25 11.3 0.8 2.0 2 0 0 2 2 2 0 WTAP/Mum2p family DUF2802 PF10975.8 gi|240103679|ref|YP_002959988.1| - 0.24 11.5 5.7 0.59 10.3 0.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2802) YlqD PF11068.8 gi|240103679|ref|YP_002959988.1| - 0.32 11.4 6.8 0.52 10.7 6.8 1.3 1 1 0 1 1 1 0 YlqD protein DUF4795 PF16043.5 gi|240103679|ref|YP_002959988.1| - 0.34 10.5 6.0 1.6 8.3 6.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) V_ATPase_I PF01496.19 gi|240103679|ref|YP_002959988.1| - 0.35 8.7 4.8 0.39 8.6 4.8 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4407 PF14362.6 gi|240103679|ref|YP_002959988.1| - 0.39 10.0 5.4 0.64 9.3 5.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Rx_N PF18052.1 gi|240103679|ref|YP_002959988.1| - 0.43 10.9 6.4 1.2 9.5 2.2 2.2 1 1 1 2 2 2 0 Rx N-terminal domain ZapB PF06005.12 gi|240103679|ref|YP_002959988.1| - 0.54 10.7 13.9 0.13 12.7 8.2 2.1 1 1 1 2 2 2 0 Cell division protein ZapB DUF3450 PF11932.8 gi|240103679|ref|YP_002959988.1| - 0.62 9.3 9.6 0.89 8.8 7.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) GrpE PF01025.19 gi|240103679|ref|YP_002959988.1| - 0.84 9.3 8.3 1.2 8.8 8.3 1.3 1 1 0 1 1 1 0 GrpE Spc24 PF08286.11 gi|240103679|ref|YP_002959988.1| - 0.89 9.8 8.3 6 7.2 8.3 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 SlyX PF04102.12 gi|240103679|ref|YP_002959988.1| - 0.92 10.2 6.0 1.3 9.7 0.9 2.4 1 1 0 2 2 2 0 SlyX DivIC PF04977.15 gi|240103679|ref|YP_002959988.1| - 1.1 9.1 10.6 0.23 11.3 3.4 2.2 2 0 0 2 2 2 0 Septum formation initiator BST2 PF16716.5 gi|240103679|ref|YP_002959988.1| - 1.1 9.9 8.6 0.75 10.4 1.4 2.4 2 1 1 3 3 2 0 Bone marrow stromal antigen 2 CorA PF01544.18 gi|240103679|ref|YP_002959988.1| - 1.2 8.4 5.4 5.4 6.2 5.4 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Tup_N PF08581.10 gi|240103679|ref|YP_002959988.1| - 1.3 9.4 11.5 3 8.2 1.2 2.8 1 1 1 2 2 2 0 Tup N-terminal EMP24_GP25L PF01105.24 gi|240103679|ref|YP_002959988.1| - 1.3 8.9 5.4 0.62 10.0 2.0 1.9 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD FapA PF03961.13 gi|240103679|ref|YP_002959988.1| - 1.4 7.5 9.7 1.8 7.1 9.7 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Cluap1 PF10234.9 gi|240103679|ref|YP_002959988.1| - 1.4 8.2 11.6 12 5.2 11.3 1.9 1 1 0 1 1 1 0 Clusterin-associated protein-1 TSC22 PF01166.18 gi|240103679|ref|YP_002959988.1| - 1.6 9.1 7.2 3.4 8.0 4.2 2.5 1 1 2 3 3 3 0 TSC-22/dip/bun family APG6_N PF17675.1 gi|240103679|ref|YP_002959988.1| - 2.2 8.8 13.3 6.7 7.3 13.3 1.7 1 1 0 1 1 1 0 Apg6 coiled-coil region Uso1_p115_C PF04871.13 gi|240103679|ref|YP_002959988.1| - 3 8.2 11.6 0.51 10.7 2.8 2.0 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Ax_dynein_light PF10211.9 gi|240103679|ref|YP_002959988.1| - 3.1 7.7 12.8 0.25 11.3 4.6 2.0 1 1 1 2 2 2 0 Axonemal dynein light chain Fib_alpha PF08702.10 gi|240103679|ref|YP_002959988.1| - 3.4 7.8 8.0 16 5.6 1.7 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Prefoldin_2 PF01920.20 gi|240103679|ref|YP_002959988.1| - 3.5 7.6 16.2 0.38 10.7 5.4 2.5 1 1 0 2 2 2 0 Prefoldin subunit ACCA PF03255.14 gi|240103679|ref|YP_002959988.1| - 4.1 7.3 7.6 0.96 9.3 2.1 1.9 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Prefoldin PF02996.17 gi|240103679|ref|YP_002959988.1| - 4.8 7.1 11.8 1.5 8.8 2.4 2.4 1 1 0 2 2 2 0 Prefoldin subunit DUF4191 PF13829.6 gi|240103679|ref|YP_002959988.1| - 5.9 6.2 6.1 16 4.8 0.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) DUF4337 PF14235.6 gi|240103679|ref|YP_002959988.1| - 7 6.7 10.3 0.4 10.8 2.7 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF4337) Tho2 PF11262.8 gi|240103679|ref|YP_002959988.1| - 8.6 5.5 10.7 40 3.3 10.7 1.8 1 1 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 LMBR1 PF04791.16 gi|240103679|ref|YP_002959988.1| - 8.8 5.1 6.5 12 4.7 6.5 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Helicase_C PF00271.31 gi|240103680|ref|YP_002959989.1| - 1.3e-23 83.4 0.0 3.5e-23 82.0 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|240103680|ref|YP_002959989.1| - 1.1e-19 70.4 0.1 3.9e-19 68.6 0.1 1.8 1 1 0 1 1 1 1 SNF2 family N-terminal domain DUF3883 PF13020.6 gi|240103680|ref|YP_002959989.1| - 2.9e-19 68.9 1.3 7.3e-19 67.6 0.5 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3883) ResIII PF04851.15 gi|240103680|ref|YP_002959989.1| - 4.6e-13 49.5 0.0 1.3e-12 48.1 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|240103680|ref|YP_002959989.1| - 1.1e-06 28.6 0.0 3.3e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|240103680|ref|YP_002959989.1| - 0.00015 21.2 0.0 0.00057 19.2 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Helicase_RecD PF05127.14 gi|240103680|ref|YP_002959989.1| - 0.0013 18.6 0.0 0.0049 16.7 0.0 1.9 2 0 0 2 2 2 1 Helicase Flavi_DEAD PF07652.14 gi|240103680|ref|YP_002959989.1| - 0.006 16.6 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Flavivirus DEAD domain RapA_C PF12137.8 gi|240103680|ref|YP_002959989.1| - 0.0094 15.0 1.1 0.027 13.5 0.1 2.2 2 1 0 2 2 2 1 RNA polymerase recycling family C-terminal AAA PF00004.29 gi|240103680|ref|YP_002959989.1| - 0.034 14.6 0.6 0.21 12.0 0.0 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_34 PF13872.6 gi|240103680|ref|YP_002959989.1| - 0.082 11.8 0.0 0.47 9.3 0.0 2.0 1 1 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 DUF4116 PF13475.6 gi|240103680|ref|YP_002959989.1| - 0.098 12.4 0.1 0.3 10.8 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4116) DUF1156 PF06634.12 gi|240103681|ref|YP_002959990.1| - 5.4e-24 84.1 1.3 1.3e-23 82.9 1.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_11 PF08241.12 gi|240103681|ref|YP_002959990.1| - 2.9e-09 37.5 0.1 0.0076 16.9 0.0 3.6 3 0 0 3 3 3 2 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|240103681|ref|YP_002959990.1| - 2.8e-07 30.3 0.0 0.0021 17.8 0.0 2.6 2 0 0 2 2 2 2 Conserved hypothetical protein 95 N6_N4_Mtase PF01555.18 gi|240103681|ref|YP_002959990.1| - 2.6e-06 27.3 0.0 0.0039 16.9 0.0 2.6 2 0 0 2 2 2 2 DNA methylase Methyltransf_25 PF13649.6 gi|240103681|ref|YP_002959990.1| - 3.1e-06 27.8 0.0 1.5 9.6 0.0 3.7 3 0 0 3 3 3 2 Methyltransferase domain Methyltransf_31 PF13847.6 gi|240103681|ref|YP_002959990.1| - 5.6e-05 23.0 0.0 0.012 15.4 0.0 3.1 3 1 0 3 3 3 1 Methyltransferase domain MethyltransfD12 PF02086.15 gi|240103681|ref|YP_002959990.1| - 0.00019 21.2 2.3 0.0011 18.7 0.0 2.7 3 0 0 3 3 3 1 D12 class N6 adenine-specific DNA methyltransferase UPF0020 PF01170.18 gi|240103681|ref|YP_002959990.1| - 0.00023 20.9 0.0 0.5 10.0 0.0 3.7 3 0 0 3 3 3 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|240103681|ref|YP_002959990.1| - 0.0079 16.0 0.1 5.1 6.9 0.0 2.8 3 0 0 3 3 3 2 Methyltransferase domain Ubie_methyltran PF01209.18 gi|240103681|ref|YP_002959990.1| - 0.17 11.2 0.0 1.4 8.2 0.0 2.1 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family DUF155 PF02582.14 gi|240103682|ref|YP_002959991.1| - 0.0046 17.1 0.7 0.0094 16.1 0.5 1.5 1 1 0 1 1 1 1 Uncharacterised ACR, YagE family COG1723 SNF2_N PF00176.23 gi|240103682|ref|YP_002959991.1| - 0.095 11.4 0.5 0.13 10.9 0.5 1.1 1 0 0 1 1 1 0 SNF2 family N-terminal domain Xpo1 PF08389.12 gi|240103682|ref|YP_002959991.1| - 0.56 10.3 3.3 7.1 6.7 3.7 2.6 1 1 1 2 2 2 0 Exportin 1-like protein ATPase_2 PF01637.18 gi|240103683|ref|YP_002959992.1| - 1.5e-16 61.1 0.0 2.2e-16 60.5 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|240103683|ref|YP_002959992.1| - 6.4e-08 32.7 0.1 1.5e-05 25.1 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|240103683|ref|YP_002959992.1| - 7.9e-06 26.2 0.0 2.3e-05 24.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240103683|ref|YP_002959992.1| - 2.4e-05 24.8 0.3 0.00014 22.3 0.1 2.2 2 1 0 2 2 2 1 AAA ATPase domain T2SSE PF00437.20 gi|240103683|ref|YP_002959992.1| - 0.0018 17.4 0.0 0.0028 16.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA PF00004.29 gi|240103683|ref|YP_002959992.1| - 0.12 12.8 0.0 0.37 11.2 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CtsR_C PF17727.1 gi|240103683|ref|YP_002959992.1| - 0.14 12.3 0.0 0.32 11.1 0.0 1.6 1 0 0 1 1 1 0 CtsR C-terminal dimerization domain DUF4373 PF14297.6 gi|240103683|ref|YP_002959992.1| - 0.14 12.9 0.0 0.44 11.4 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4373) DUF499 PF04465.12 gi|240103684|ref|YP_002959993.1| - 2.7e-42 144.7 8.4 5.4e-41 140.3 8.4 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF499) AAA PF00004.29 gi|240103684|ref|YP_002959993.1| - 0.015 15.7 0.2 0.05 14.0 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF1216 PF06746.11 gi|240103684|ref|YP_002959993.1| - 0.084 12.9 1.0 0.25 11.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1216) Tam41_Mmp37 PF09139.11 gi|240103684|ref|YP_002959993.1| - 0.37 10.2 1.9 0.29 10.5 0.2 1.6 2 0 0 2 2 2 0 Phosphatidate cytidylyltransferase, mitochondrial Mt_ATP-synt_B PF05405.14 gi|240103685|ref|YP_002959994.1| - 0.025 14.2 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) DUF1664 PF07889.12 gi|240103686|ref|YP_002959995.1| - 0.066 13.3 0.7 1.9 8.5 0.3 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DKNYY PF13644.6 gi|240103686|ref|YP_002959995.1| - 0.29 11.9 4.2 0.96 10.2 4.2 2.0 1 1 0 1 1 1 0 DKNYY family UvrD-helicase PF00580.21 gi|240103687|ref|YP_002959996.1| - 5.5e-22 78.7 2.4 1.1e-13 51.5 0.0 3.8 3 1 0 3 3 3 3 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|240103687|ref|YP_002959996.1| - 3.2e-18 66.2 9.7 1.5e-16 60.8 1.6 2.7 2 1 1 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|240103687|ref|YP_002959996.1| - 2.1e-16 60.6 0.0 7.7e-15 55.5 0.0 2.8 2 1 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 gi|240103687|ref|YP_002959996.1| - 2.3e-11 43.3 0.0 7.1e-11 41.8 0.0 1.9 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|240103687|ref|YP_002959996.1| - 2.2e-08 34.1 0.1 0.062 13.0 0.0 3.6 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|240103687|ref|YP_002959996.1| - 6.9e-06 25.9 0.0 0.013 15.2 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA_12 PF13087.6 gi|240103687|ref|YP_002959996.1| - 0.00013 21.6 8.6 0.00015 21.4 5.3 2.7 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|240103687|ref|YP_002959996.1| - 0.00051 19.4 0.2 2.5 7.2 0.0 3.3 3 1 0 3 3 3 2 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|240103687|ref|YP_002959996.1| - 0.0024 18.2 0.1 5.2 7.3 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|240103687|ref|YP_002959996.1| - 0.012 16.0 0.1 0.31 11.4 0.0 2.8 2 2 0 2 2 2 0 AAA ATPase domain AAA_11 PF13086.6 gi|240103687|ref|YP_002959996.1| - 0.012 15.4 0.2 0.068 12.9 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|240103687|ref|YP_002959996.1| - 0.023 14.4 0.3 0.23 11.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|240103687|ref|YP_002959996.1| - 0.057 14.0 1.3 0.83 10.2 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|240103687|ref|YP_002959996.1| - 0.12 12.8 7.0 1.5 9.2 0.4 4.4 5 1 0 5 5 5 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|240103687|ref|YP_002959996.1| - 0.17 11.9 0.4 1.2 9.1 0.0 2.6 4 0 0 4 4 3 0 AAA domain (dynein-related subfamily) REV1_C PF16727.5 gi|240103687|ref|YP_002959996.1| - 0.18 12.2 1.7 1.2 9.6 0.1 3.0 4 0 0 4 4 4 0 DNA repair protein REV1 C-terminal domain DUF5106 PF17127.4 gi|240103687|ref|YP_002959996.1| - 0.92 9.8 3.8 24 5.2 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF5106) Toprim PF01751.22 gi|240103688|ref|YP_002959997.1| - 2.6e-09 37.2 1.6 3.3e-08 33.7 0.2 2.6 3 0 0 3 3 2 1 Toprim domain HALZ PF02183.18 gi|240103688|ref|YP_002959997.1| - 1e-06 28.8 8.5 1e-06 28.8 8.5 2.8 2 1 1 3 3 2 2 Homeobox associated leucine zipper Cluap1 PF10234.9 gi|240103688|ref|YP_002959997.1| - 0.0019 17.6 3.9 0.25 10.7 1.5 2.1 2 0 0 2 2 2 2 Clusterin-associated protein-1 GAS PF13851.6 gi|240103688|ref|YP_002959997.1| - 0.0027 17.1 7.9 0.0048 16.3 7.9 1.4 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Spc7 PF08317.11 gi|240103688|ref|YP_002959997.1| - 0.0031 16.5 2.9 0.0048 15.8 2.9 1.4 1 0 0 1 1 1 1 Spc7 kinetochore protein SHE3 PF17078.5 gi|240103688|ref|YP_002959997.1| - 0.0031 17.3 5.8 0.35 10.5 0.3 2.2 1 1 1 2 2 2 2 SWI5-dependent HO expression protein 3 Dor1 PF04124.12 gi|240103688|ref|YP_002959997.1| - 0.016 14.0 1.4 0.024 13.3 1.4 1.3 1 0 0 1 1 1 0 Dor1-like family Toprim_2 PF13155.6 gi|240103688|ref|YP_002959997.1| - 0.018 15.5 0.0 0.039 14.4 0.0 1.6 1 0 0 1 1 1 0 Toprim-like RmuC PF02646.16 gi|240103688|ref|YP_002959997.1| - 0.02 14.0 0.7 0.093 11.9 0.6 1.9 1 1 1 2 2 2 0 RmuC family Occludin_ELL PF07303.13 gi|240103688|ref|YP_002959997.1| - 0.022 15.5 4.3 0.051 14.3 4.3 1.6 1 0 0 1 1 1 0 Occludin homology domain bZIP_1 PF00170.21 gi|240103688|ref|YP_002959997.1| - 0.026 14.6 5.6 0.045 13.8 4.6 1.9 1 1 0 1 1 1 0 bZIP transcription factor DUF812 PF05667.11 gi|240103688|ref|YP_002959997.1| - 0.027 13.4 3.6 0.042 12.8 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) BLOC1_2 PF10046.9 gi|240103688|ref|YP_002959997.1| - 0.03 14.6 2.6 0.096 13.0 2.6 1.9 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4472 PF14739.6 gi|240103688|ref|YP_002959997.1| - 0.041 14.6 8.0 0.048 14.4 4.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4472) FapA PF03961.13 gi|240103688|ref|YP_002959997.1| - 0.044 12.4 2.0 0.074 11.6 2.0 1.4 1 0 0 1 1 1 0 Flagellar Assembly Protein A YabA PF06156.13 gi|240103688|ref|YP_002959997.1| - 0.045 14.4 4.3 0.045 14.4 4.3 2.2 2 1 1 3 3 2 0 Initiation control protein YabA FliJ PF02050.16 gi|240103688|ref|YP_002959997.1| - 0.046 14.0 6.0 0.11 12.7 6.0 1.6 1 0 0 1 1 1 0 Flagellar FliJ protein DivIC PF04977.15 gi|240103688|ref|YP_002959997.1| - 0.068 12.9 7.8 0.3 10.9 1.8 2.4 1 1 1 2 2 2 0 Septum formation initiator Toprim_4 PF13662.6 gi|240103688|ref|YP_002959997.1| - 0.083 13.4 0.3 0.44 11.1 0.3 2.3 1 1 0 1 1 1 0 Toprim domain ZapB PF06005.12 gi|240103688|ref|YP_002959997.1| - 0.084 13.3 11.1 0.22 12.0 9.7 2.3 1 1 1 2 2 2 0 Cell division protein ZapB Mod_r PF07200.13 gi|240103688|ref|YP_002959997.1| - 0.087 12.9 7.5 0.35 11.0 7.5 1.9 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Atg14 PF10186.9 gi|240103688|ref|YP_002959997.1| - 0.098 11.7 1.3 0.14 11.2 1.3 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc24 PF08286.11 gi|240103688|ref|YP_002959997.1| - 0.17 12.1 2.1 0.48 10.7 2.1 1.8 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 JIP_LZII PF16471.5 gi|240103688|ref|YP_002959997.1| - 0.31 11.2 6.6 1.8 8.8 6.7 2.2 1 1 0 1 1 1 0 JNK-interacting protein leucine zipper II BRE1 PF08647.11 gi|240103688|ref|YP_002959997.1| - 0.49 10.5 7.3 0.061 13.4 2.7 1.8 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase DUF2205 PF10224.9 gi|240103688|ref|YP_002959997.1| - 0.84 9.7 6.7 1.2 9.2 4.4 2.4 2 1 1 3 3 2 0 Short coiled-coil protein Bcr-Abl_Oligo PF09036.10 gi|240103688|ref|YP_002959997.1| - 1.2 9.2 7.7 0.19 11.7 0.4 2.9 1 1 1 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain CENP-H PF05837.12 gi|240103688|ref|YP_002959997.1| - 1.4 9.4 10.3 0.058 13.8 2.8 2.4 2 1 0 2 2 2 0 Centromere protein H (CENP-H) TolA_bind_tri PF16331.5 gi|240103688|ref|YP_002959997.1| - 1.7 8.8 8.7 0.6 10.2 2.7 2.6 2 1 1 3 3 3 0 TolA binding protein trimerisation COG6 PF06419.11 gi|240103688|ref|YP_002959997.1| - 2.8 6.1 9.0 0.079 11.2 2.4 1.6 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 OmpH PF03938.14 gi|240103688|ref|YP_002959997.1| - 3.6 7.9 7.4 0.49 10.7 2.8 1.8 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) DUF4795 PF16043.5 gi|240103688|ref|YP_002959997.1| - 6 6.4 10.0 1.2 8.6 5.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4795) GrpE PF01025.19 gi|240103688|ref|YP_002959997.1| - 6.1 6.5 13.6 0.6 9.8 6.5 2.5 2 1 1 3 3 3 0 GrpE Phage_integrase PF00589.22 gi|240103689|ref|YP_002959998.1| - 1e-48 165.4 0.0 1.5e-48 164.8 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|240103689|ref|YP_002959998.1| - 1.9e-07 31.3 4.0 8.3e-07 29.2 2.0 2.9 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|240103689|ref|YP_002959998.1| - 1e-05 25.9 2.2 2.9e-05 24.5 0.2 2.8 3 2 2 5 5 5 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|240103689|ref|YP_002959998.1| - 0.0016 18.4 0.5 0.57 10.1 0.0 2.3 2 0 0 2 2 2 2 Archaeal phage integrase Acetyltransf_11 PF13720.6 gi|240103689|ref|YP_002959998.1| - 0.062 13.8 0.8 0.58 10.7 0.1 2.3 2 0 0 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IF-2B PF01008.17 gi|240103690|ref|YP_002959999.1| - 2.4e-93 312.4 1.0 2.7e-93 312.2 1.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family BtrH_N PF14399.6 gi|240103690|ref|YP_002959999.1| - 0.0048 17.2 0.2 0.69 10.2 0.0 2.4 2 0 0 2 2 2 2 Butirosin biosynthesis protein H, N-terminal Ribosomal_S6e PF01092.19 gi|240103691|ref|YP_002960000.1| - 1.5e-37 128.3 0.1 4.9e-37 126.7 0.1 1.7 1 1 0 1 1 1 1 Ribosomal protein S6e tRNA-synt_2c PF01411.19 gi|240103692|ref|YP_002960001.1| - 7.3e-12 44.6 0.0 1e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|240103692|ref|YP_002960001.1| - 2.7e-07 30.6 0.1 4.3e-07 29.9 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Ntox33 PF15533.6 gi|240103692|ref|YP_002960001.1| - 0.01 16.3 0.2 0.1 13.1 0.1 2.4 2 0 0 2 2 2 0 Bacterial toxin 33 Glutaredoxin PF00462.24 gi|240103693|ref|YP_002960002.1| - 0.00022 21.4 0.0 0.00041 20.5 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.20 gi|240103693|ref|YP_002960002.1| - 0.0022 17.9 0.0 0.0045 16.9 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|240103693|ref|YP_002960002.1| - 0.041 14.3 0.3 0.24 11.9 0.3 2.1 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|240103693|ref|YP_002960002.1| - 0.076 13.1 0.2 0.62 10.1 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|240103693|ref|YP_002960002.1| - 0.13 12.4 0.1 0.25 11.5 0.1 1.4 1 0 0 1 1 1 0 Thioredoxin AP_endonuc_2 PF01261.24 gi|240103694|ref|YP_002960003.1| - 1e-15 57.8 0.0 1.3e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_67M PF07488.12 gi|240103694|ref|YP_002960003.1| - 0.17 10.9 0.1 0.28 10.2 0.1 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 67 middle domain SRP54 PF00448.22 gi|240103695|ref|YP_002960004.1| - 1.2e-78 263.3 0.7 1.6e-78 262.8 0.1 1.5 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|240103695|ref|YP_002960004.1| - 7.2e-11 42.2 8.3 7.2e-11 42.2 8.3 2.6 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|240103695|ref|YP_002960004.1| - 4.4e-08 33.1 0.4 7.5e-08 32.3 0.4 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|240103695|ref|YP_002960004.1| - 2.4e-07 30.2 0.1 9.5e-07 28.3 0.1 1.9 1 1 1 2 2 2 1 Zeta toxin MeaB PF03308.16 gi|240103695|ref|YP_002960004.1| - 5.4e-07 28.9 0.1 1.4e-06 27.5 0.1 1.7 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|240103695|ref|YP_002960004.1| - 9.4e-07 29.2 0.3 4.4e-05 23.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|240103695|ref|YP_002960004.1| - 3.4e-06 26.8 0.2 6.6e-06 25.8 0.2 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|240103695|ref|YP_002960004.1| - 6.1e-06 26.2 2.6 0.0008 19.3 0.1 2.4 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|240103695|ref|YP_002960004.1| - 6.6e-06 26.3 0.1 1.8e-05 25.0 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.6 gi|240103695|ref|YP_002960004.1| - 1.3e-05 25.6 0.1 1.3e-05 25.6 0.1 2.5 2 1 1 3 3 2 1 AAA domain Peripla_BP_4 PF13407.6 gi|240103695|ref|YP_002960004.1| - 1.5e-05 24.7 3.3 0.074 12.6 0.3 2.9 1 1 2 3 3 3 2 Periplasmic binding protein domain MMR_HSR1 PF01926.23 gi|240103695|ref|YP_002960004.1| - 5.7e-05 23.2 3.1 0.0011 19.0 0.5 2.8 2 1 0 2 2 2 1 50S ribosome-binding GTPase CbiA PF01656.23 gi|240103695|ref|YP_002960004.1| - 5.7e-05 23.2 2.8 0.00018 21.5 0.6 2.6 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain VirC1 PF07015.11 gi|240103695|ref|YP_002960004.1| - 8.1e-05 22.0 0.0 0.00015 21.2 0.0 1.5 1 0 0 1 1 1 1 VirC1 protein Thymidylate_kin PF02223.17 gi|240103695|ref|YP_002960004.1| - 9.1e-05 22.2 2.4 0.00017 21.4 0.1 2.5 2 2 0 2 2 2 1 Thymidylate kinase RsgA_GTPase PF03193.16 gi|240103695|ref|YP_002960004.1| - 0.00081 19.3 0.4 0.33 10.9 0.4 3.5 1 1 3 4 4 4 1 RsgA GTPase APS_kinase PF01583.20 gi|240103695|ref|YP_002960004.1| - 0.0011 18.8 0.2 0.0088 16.0 0.0 2.3 2 1 1 3 3 3 1 Adenylylsulphate kinase KTI12 PF08433.10 gi|240103695|ref|YP_002960004.1| - 0.0015 18.1 0.0 0.0039 16.7 0.0 1.6 1 0 0 1 1 1 1 Chromatin associated protein KTI12 KdpD PF02702.17 gi|240103695|ref|YP_002960004.1| - 0.0015 18.0 2.4 0.0024 17.4 0.1 2.1 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain Fe-ADH PF00465.19 gi|240103695|ref|YP_002960004.1| - 0.0016 17.4 2.6 0.028 13.3 0.4 2.5 2 2 0 2 2 2 1 Iron-containing alcohol dehydrogenase AAA_19 PF13245.6 gi|240103695|ref|YP_002960004.1| - 0.0021 18.4 0.4 0.0066 16.8 0.3 1.9 1 1 1 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|240103695|ref|YP_002960004.1| - 0.0033 17.8 0.2 0.0092 16.4 0.0 1.9 2 1 0 2 2 1 1 AAA ATPase domain 6PF2K PF01591.18 gi|240103695|ref|YP_002960004.1| - 0.0035 16.7 0.4 0.023 14.0 0.0 2.1 2 0 0 2 2 2 1 6-phosphofructo-2-kinase Peripla_BP_6 PF13458.6 gi|240103695|ref|YP_002960004.1| - 0.0042 16.8 0.5 0.0099 15.6 0.5 1.7 1 1 0 1 1 1 1 Periplasmic binding protein AAA_28 PF13521.6 gi|240103695|ref|YP_002960004.1| - 0.0042 17.3 0.1 0.012 15.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|240103695|ref|YP_002960004.1| - 0.0056 17.2 0.8 0.033 14.7 0.0 2.2 2 1 0 2 2 2 1 ABC transporter CbiJ PF02571.14 gi|240103695|ref|YP_002960004.1| - 0.019 14.4 0.1 0.031 13.7 0.1 1.3 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK DUF2855 PF11017.8 gi|240103695|ref|YP_002960004.1| - 0.019 14.7 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) NTPase_1 PF03266.15 gi|240103695|ref|YP_002960004.1| - 0.02 14.8 9.3 0.096 12.6 0.3 3.5 1 1 3 4 4 3 0 NTPase CoA_binding_2 PF13380.6 gi|240103695|ref|YP_002960004.1| - 0.025 15.1 0.6 0.72 10.4 0.0 2.7 1 1 1 2 2 2 0 CoA binding domain PIF1 PF05970.14 gi|240103695|ref|YP_002960004.1| - 0.025 13.8 0.0 0.038 13.2 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_24 PF13479.6 gi|240103695|ref|YP_002960004.1| - 0.027 14.2 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|240103695|ref|YP_002960004.1| - 0.029 14.4 0.4 0.09 12.8 0.1 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|240103695|ref|YP_002960004.1| - 0.033 13.4 0.2 0.052 12.8 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATP_bind_1 PF03029.17 gi|240103695|ref|YP_002960004.1| - 0.037 13.8 0.1 0.12 12.2 0.1 1.9 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AtuA PF07287.11 gi|240103695|ref|YP_002960004.1| - 0.038 12.7 0.5 0.25 10.0 0.5 1.9 1 1 1 2 2 2 0 Acyclic terpene utilisation family protein AtuA TIR_2 PF13676.6 gi|240103695|ref|YP_002960004.1| - 0.039 14.6 0.1 7.4 7.2 0.0 3.0 2 1 0 3 3 3 0 TIR domain Glyco_trans_4_2 PF13477.6 gi|240103695|ref|YP_002960004.1| - 0.051 13.6 0.2 1.8 8.6 0.2 2.3 1 1 0 1 1 1 0 Glycosyl transferase 4-like ANF_receptor PF01094.28 gi|240103695|ref|YP_002960004.1| - 0.063 12.4 0.1 0.14 11.2 0.1 1.7 1 1 0 1 1 1 0 Receptor family ligand binding region AAA_31 PF13614.6 gi|240103695|ref|YP_002960004.1| - 0.064 13.2 1.2 0.11 12.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|240103695|ref|YP_002960004.1| - 0.071 12.8 0.1 0.071 12.8 0.1 2.1 1 1 1 2 2 2 0 AAA ATPase domain B5 PF03484.15 gi|240103695|ref|YP_002960004.1| - 0.072 13.4 0.3 0.37 11.1 0.2 2.1 2 0 0 2 2 2 0 tRNA synthetase B5 domain ZnuA PF01297.17 gi|240103695|ref|YP_002960004.1| - 0.076 12.4 0.2 1.7 8.0 0.0 2.4 1 1 1 2 2 2 0 Zinc-uptake complex component A periplasmic TPP_enzyme_M PF00205.22 gi|240103695|ref|YP_002960004.1| - 0.082 12.6 1.0 5.2 6.8 0.1 2.8 3 0 0 3 3 2 0 Thiamine pyrophosphate enzyme, central domain NACHT PF05729.12 gi|240103695|ref|YP_002960004.1| - 0.093 12.6 0.1 0.21 11.5 0.1 1.6 1 0 0 1 1 1 0 NACHT domain Glyco_transf_4 PF13439.6 gi|240103695|ref|YP_002960004.1| - 0.099 12.6 0.1 0.56 10.2 0.1 2.0 1 1 1 2 2 2 0 Glycosyltransferase Family 4 TrwB_AAD_bind PF10412.9 gi|240103695|ref|YP_002960004.1| - 0.1 11.5 0.0 0.22 10.4 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF1611 PF07755.11 gi|240103695|ref|YP_002960004.1| - 0.11 11.7 3.3 1.6 8.0 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain KAP_NTPase PF07693.14 gi|240103695|ref|YP_002960004.1| - 0.11 11.7 0.3 0.36 10.0 0.1 1.8 1 1 1 2 2 2 0 KAP family P-loop domain LpxK PF02606.14 gi|240103695|ref|YP_002960004.1| - 0.12 11.5 5.5 0.19 10.8 1.7 2.7 2 1 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_7 PF12775.7 gi|240103695|ref|YP_002960004.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region G-alpha PF00503.20 gi|240103695|ref|YP_002960004.1| - 0.18 10.9 0.0 0.26 10.4 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit AAA_23 PF13476.6 gi|240103695|ref|YP_002960004.1| - 0.18 12.3 6.0 0.28 11.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF4177 PF13783.6 gi|240103696|ref|YP_002960005.1| - 0.02 15.2 0.1 0.063 13.6 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4177) Endotoxin_mid PF09131.10 gi|240103696|ref|YP_002960005.1| - 0.089 12.5 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Bacillus thuringiensis delta-Endotoxin, middle domain Bmp PF02608.14 gi|240103697|ref|YP_002960006.1| - 7.4e-55 186.1 11.7 2.1e-54 184.6 11.7 1.7 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_1 PF00532.21 gi|240103697|ref|YP_002960006.1| - 0.083 12.3 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family ABC_tran PF00005.27 gi|240103698|ref|YP_002960007.1| - 3.2e-46 157.2 0.0 6.1e-27 94.8 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|240103698|ref|YP_002960007.1| - 5.7e-09 36.2 0.6 0.0017 18.3 0.1 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Bac_DnaA PF00308.18 gi|240103698|ref|YP_002960007.1| - 0.00062 19.7 3.2 0.002 18.0 0.1 3.0 4 0 0 4 4 4 1 Bacterial dnaA protein MobB PF03205.14 gi|240103698|ref|YP_002960007.1| - 0.011 15.6 1.6 0.59 10.0 0.2 2.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.6 gi|240103698|ref|YP_002960007.1| - 0.012 15.3 0.5 0.52 10.1 0.2 2.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|240103698|ref|YP_002960007.1| - 0.05 14.1 0.2 0.13 12.8 0.2 1.6 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|240103698|ref|YP_002960007.1| - 0.067 12.6 0.7 19 4.6 0.0 3.1 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain CobA_CobO_BtuR PF02572.15 gi|240103698|ref|YP_002960007.1| - 0.12 12.7 0.3 0.28 11.4 0.3 1.6 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA PF00004.29 gi|240103698|ref|YP_002960007.1| - 0.12 12.8 0.9 1.2 9.5 0.0 2.9 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|240103698|ref|YP_002960007.1| - 0.13 12.7 0.1 0.5 10.7 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.6 gi|240103698|ref|YP_002960007.1| - 0.2 11.3 1.6 6.9 6.3 0.2 2.4 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|240103698|ref|YP_002960007.1| - 0.22 11.2 0.4 0.65 9.6 0.1 1.7 1 1 1 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|240103698|ref|YP_002960007.1| - 0.31 11.3 1.0 2.2 8.6 1.0 2.3 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|240103698|ref|YP_002960007.1| - 0.51 10.2 3.9 2.5 8.0 0.1 3.1 4 0 0 4 4 4 0 RsgA GTPase BPD_transp_2 PF02653.16 gi|240103699|ref|YP_002960008.1| - 1.4e-37 129.4 31.2 1.4e-37 129.4 31.2 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component DUF1229 PF06797.11 gi|240103699|ref|YP_002960008.1| - 0.19 11.9 0.3 0.19 11.9 0.3 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1229) BPD_transp_2 PF02653.16 gi|240103700|ref|YP_002960009.1| - 2.4e-33 115.4 25.2 2.8e-33 115.2 25.2 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Gly-zipper_Omp PF13488.6 gi|240103700|ref|YP_002960009.1| - 0.041 13.9 2.7 0.041 13.9 2.7 2.7 4 0 0 4 4 4 0 Glycine zipper ZnuA PF01297.17 gi|240103701|ref|YP_002960010.1| - 4.5e-32 111.4 0.0 5.3e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Pribosyltran PF00156.27 gi|240103703|ref|YP_002960012.1| - 2.2e-22 79.3 0.0 3.4e-22 78.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain FlhC PF05280.11 gi|240103703|ref|YP_002960012.1| - 0.022 14.5 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) PQ-loop PF04193.14 gi|240103704|ref|YP_002960013.1| - 0.0001 22.0 0.9 0.0001 22.0 0.9 1.6 2 0 0 2 2 2 1 PQ loop repeat LAB_N PF07578.11 gi|240103704|ref|YP_002960013.1| - 0.00062 19.8 1.5 0.00063 19.8 0.3 1.6 2 0 0 2 2 2 1 Lipid A Biosynthesis N-terminal domain P5-ATPase PF12409.8 gi|240103704|ref|YP_002960013.1| - 0.031 14.4 0.2 0.042 13.9 0.2 1.2 1 0 0 1 1 1 0 P5-type ATPase cation transporter CstA PF02554.14 gi|240103704|ref|YP_002960013.1| - 0.032 13.2 0.3 0.033 13.1 0.3 1.1 1 0 0 1 1 1 0 Carbon starvation protein CstA TMEM40 PF15817.5 gi|240103704|ref|YP_002960013.1| - 0.085 12.6 0.5 0.14 11.9 0.1 1.6 1 1 1 2 2 2 0 Transmembrane protein 40 family TPR_19 PF14559.6 gi|240103705|ref|YP_002960014.1| - 0.00026 21.4 1.6 0.59 10.7 0.1 3.1 2 1 1 3 3 3 2 Tetratricopeptide repeat Type_III_YscG PF09477.10 gi|240103705|ref|YP_002960014.1| - 0.0011 19.0 0.4 0.65 10.1 0.1 2.3 1 1 0 2 2 2 2 Bacterial type II secretion system chaperone protein (type_III_yscG) TPR_14 PF13428.6 gi|240103705|ref|YP_002960014.1| - 0.0021 18.7 6.9 1.6 9.8 0.1 4.0 2 1 2 4 4 4 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|240103705|ref|YP_002960014.1| - 0.0029 18.2 3.0 1.5 9.5 0.7 2.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|240103705|ref|YP_002960014.1| - 0.0051 17.1 2.4 0.75 10.1 0.4 2.8 1 1 2 3 3 3 2 Tetratricopeptide repeat PPR PF01535.20 gi|240103705|ref|YP_002960014.1| - 0.022 15.0 0.1 3.3 8.2 0.0 3.5 3 0 0 3 3 3 0 PPR repeat TPR_1 PF00515.28 gi|240103705|ref|YP_002960014.1| - 0.031 14.1 0.2 24 5.0 0.0 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat SgrR_N PF12793.7 gi|240103705|ref|YP_002960014.1| - 0.051 13.8 0.3 8.5 6.6 0.1 2.7 1 1 2 3 3 3 0 Sugar transport-related sRNA regulator N-term TPR_10 PF13374.6 gi|240103705|ref|YP_002960014.1| - 0.077 12.9 1.9 1.5 8.8 0.1 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat TonB_2 PF13103.6 gi|240103705|ref|YP_002960014.1| - 0.1 12.8 0.1 18 5.7 0.0 2.6 2 1 0 2 2 2 0 TonB C terminal TPR_4 PF07721.14 gi|240103705|ref|YP_002960014.1| - 0.18 12.5 8.9 0.36 11.6 0.1 3.2 4 0 0 4 4 2 0 Tetratricopeptide repeat Peptidase_S49 PF01343.18 gi|240103706|ref|YP_002960015.1| - 5.2e-40 136.9 0.1 7.9e-40 136.3 0.1 1.3 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|240103706|ref|YP_002960015.1| - 4.6e-08 33.2 0.1 7.8e-08 32.4 0.1 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|240103706|ref|YP_002960015.1| - 0.00011 21.3 0.0 0.00014 20.9 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Ph1570 PF09638.10 gi|240103707|ref|YP_002960016.1| - 2.7e-79 264.5 3.0 3.1e-79 264.3 3.0 1.0 1 0 0 1 1 1 1 Ph1570 protein AI-2E_transport PF01594.16 gi|240103708|ref|YP_002960017.1| - 2.1e-38 132.3 34.3 2.7e-38 131.9 34.3 1.1 1 0 0 1 1 1 1 AI-2E family transporter DUF2523 PF10734.9 gi|240103708|ref|YP_002960017.1| - 7.3 7.2 11.8 0.1 13.2 0.9 3.5 4 1 1 5 5 5 0 Protein of unknown function (DUF2523) GHMP_kinases_N PF00288.26 gi|240103709|ref|YP_002960018.1| - 3.4e-09 36.8 0.6 6.8e-09 35.8 0.6 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|240103709|ref|YP_002960018.1| - 5.4e-06 26.7 1.5 3e-05 24.3 0.0 2.6 3 0 0 3 3 3 1 GHMP kinases C terminal AGOG PF09171.10 gi|240103710|ref|YP_002960019.1| - 6.6e-84 281.1 0.0 9.4e-84 280.6 0.0 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase Death PF00531.22 gi|240103710|ref|YP_002960019.1| - 0.046 13.9 0.0 0.54 10.5 0.0 2.4 2 0 0 2 2 2 0 Death domain ABC2_membrane_2 PF12679.7 gi|240103712|ref|YP_002960021.1| - 2.9e-36 125.3 10.7 9.1e-36 123.6 10.7 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|240103712|ref|YP_002960021.1| - 5.2e-09 36.3 24.6 8.3e-09 35.6 24.6 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|240103712|ref|YP_002960021.1| - 7.3e-07 28.8 24.3 7.3e-07 28.8 24.3 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|240103712|ref|YP_002960021.1| - 3.2e-06 26.5 28.6 3.2e-06 26.5 28.6 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|240103713|ref|YP_002960022.1| - 2.1e-30 106.0 0.0 3.1e-30 105.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103713|ref|YP_002960022.1| - 1.6e-10 41.3 2.5 6.1e-07 29.5 0.0 3.0 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|240103713|ref|YP_002960022.1| - 2.5e-05 24.9 0.0 5.8e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|240103713|ref|YP_002960022.1| - 0.0023 17.6 0.1 0.0045 16.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|240103713|ref|YP_002960022.1| - 0.0085 15.6 0.2 0.051 13.0 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|240103713|ref|YP_002960022.1| - 0.027 15.0 2.9 0.057 13.9 2.3 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|240103713|ref|YP_002960022.1| - 0.11 12.4 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain SRP54 PF00448.22 gi|240103713|ref|YP_002960022.1| - 0.12 11.9 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|240103713|ref|YP_002960022.1| - 0.13 11.8 0.0 0.5 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain UbiD PF01977.16 gi|240103714|ref|YP_002960023.1| - 1.4e-102 343.6 0.1 1.6e-102 343.4 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ResIII PF04851.15 gi|240103715|ref|YP_002960024.1| - 5.5e-19 68.8 0.0 1.4e-18 67.5 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|240103715|ref|YP_002960024.1| - 7e-10 39.2 0.0 2.7e-09 37.3 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SWI2_SNF2 PF18766.1 gi|240103715|ref|YP_002960024.1| - 2.1e-08 34.1 0.0 5e-08 32.9 0.0 1.6 1 1 0 1 1 1 1 SWI2/SNF2 ATPase DEAD PF00270.29 gi|240103715|ref|YP_002960024.1| - 2.2e-06 27.5 0.3 8.4e-06 25.7 0.0 2.1 2 1 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|240103715|ref|YP_002960024.1| - 0.0028 16.9 0.0 0.0049 16.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) PseudoU_synth_1 PF01416.20 gi|240103716|ref|YP_002960025.1| - 2e-28 99.0 0.0 6e-23 81.4 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase Glycos_transf_2 PF00535.26 gi|240103717|ref|YP_002960026.1| - 3.2e-37 128.0 0.0 4.3e-37 127.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|240103717|ref|YP_002960026.1| - 1.1e-27 96.6 9.2 1.6e-27 96.1 9.2 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|240103717|ref|YP_002960026.1| - 3e-14 53.5 0.0 5.3e-14 52.7 0.0 1.3 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|240103717|ref|YP_002960026.1| - 0.00044 19.8 0.0 0.00062 19.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|240103717|ref|YP_002960026.1| - 0.019 14.4 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_transf_7N PF13733.6 gi|240103717|ref|YP_002960026.1| - 0.032 13.9 0.0 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 N-terminal region of glycosyl transferase group 7 CTP_synth_N PF06418.14 gi|240103718|ref|YP_002960027.1| - 5.1e-127 422.7 0.1 6.6e-127 422.3 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|240103718|ref|YP_002960027.1| - 5.3e-58 195.9 0.0 1.5e-57 194.4 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|240103718|ref|YP_002960027.1| - 7e-07 29.2 0.0 5.5e-06 26.3 0.0 2.4 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|240103718|ref|YP_002960027.1| - 0.011 15.8 0.0 0.016 15.3 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 gi|240103718|ref|YP_002960027.1| - 0.067 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Metallophos PF00149.28 gi|240103719|ref|YP_002960028.1| - 8.7e-07 29.6 5.2 2.2e-06 28.3 5.2 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF5305 PF17231.2 gi|240103719|ref|YP_002960028.1| - 9.5 5.5 16.9 20 4.5 16.9 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5305) PBP PF01161.20 gi|240103720|ref|YP_002960029.1| - 1.1e-34 119.6 0.0 1.3e-34 119.3 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF402 PF04167.13 gi|240103721|ref|YP_002960030.1| - 5.8e-15 55.2 1.3 9.1e-15 54.6 1.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF402) Methyltrn_RNA_2 PF04013.12 gi|240103722|ref|YP_002960031.1| - 9.5e-52 175.6 0.0 1.1e-51 175.4 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SpoU_methylase PF00588.19 gi|240103722|ref|YP_002960031.1| - 0.012 15.8 0.0 0.029 14.5 0.0 1.6 1 1 1 2 2 2 0 SpoU rRNA Methylase family DUF167 PF02594.16 gi|240103723|ref|YP_002960032.1| - 6.9e-25 87.0 0.2 9e-25 86.6 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF3512 PF12024.8 gi|240103723|ref|YP_002960032.1| - 0.0052 16.3 0.2 0.0082 15.7 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF3512) Gp_dh_C PF02800.20 gi|240103724|ref|YP_002960033.1| - 9.8e-32 109.7 0.3 1.4e-31 109.2 0.3 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|240103724|ref|YP_002960033.1| - 8.4e-15 55.0 0.8 5.3e-14 52.4 0.2 2.2 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|240103724|ref|YP_002960033.1| - 7.1e-06 26.3 1.0 4.3e-05 23.8 0.0 2.7 3 1 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|240103724|ref|YP_002960033.1| - 9.5e-05 21.8 0.5 0.0084 15.5 0.5 2.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|240103724|ref|YP_002960033.1| - 0.0021 18.9 0.0 0.012 16.4 0.0 2.3 2 1 1 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|240103724|ref|YP_002960033.1| - 0.0082 16.8 0.0 0.13 12.9 0.0 2.6 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|240103724|ref|YP_002960033.1| - 0.095 13.0 0.0 0.29 11.4 0.0 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain IF-2B PF01008.17 gi|240103725|ref|YP_002960034.1| - 2.8e-52 177.7 0.0 5.3e-52 176.8 0.0 1.5 1 1 0 1 1 1 1 Initiation factor 2 subunit family VASP_tetra PF08776.11 gi|240103725|ref|YP_002960034.1| - 7.6 6.2 10.5 19 4.9 2.2 3.4 3 0 0 3 3 3 0 VASP tetramerisation domain DFP PF04127.15 gi|240103726|ref|YP_002960035.1| - 5e-59 199.3 3.5 1.3e-57 194.6 0.9 2.1 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|240103726|ref|YP_002960035.1| - 3.4e-43 147.1 4.2 4.4e-42 143.5 1.5 2.2 2 0 0 2 2 2 1 Flavoprotein Radical_SAM PF04055.21 gi|240103726|ref|YP_002960035.1| - 0.0075 16.7 3.5 0.74 10.2 0.0 3.4 1 1 1 2 2 2 1 Radical SAM superfamily PTS_IIB PF02302.17 gi|240103726|ref|YP_002960035.1| - 0.015 16.0 1.1 2.8 8.7 0.1 3.3 3 0 0 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit Glyco_trans_4_2 PF13477.6 gi|240103726|ref|YP_002960035.1| - 0.027 14.5 0.9 3.6 7.6 0.1 3.5 2 2 1 3 3 3 0 Glycosyl transferase 4-like B12-binding PF02310.19 gi|240103726|ref|YP_002960035.1| - 0.05 13.6 0.2 0.58 10.2 0.1 2.4 1 1 1 2 2 2 0 B12 binding domain LpxI_N PF17930.1 gi|240103726|ref|YP_002960035.1| - 0.071 13.0 1.1 0.42 10.5 0.1 2.6 3 0 0 3 3 3 0 LpxI N-terminal domain Usp PF00582.26 gi|240103726|ref|YP_002960035.1| - 0.08 13.4 4.5 0.15 12.5 0.4 2.7 3 1 0 3 3 3 0 Universal stress protein family DUF2833 PF11090.8 gi|240103726|ref|YP_002960035.1| - 0.13 12.7 0.0 0.32 11.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2833) DUF835 PF05763.12 gi|240103727|ref|YP_002960036.1| - 7.6e-33 113.1 0.0 1.4e-32 112.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF1949 PF09186.11 gi|240103728|ref|YP_002960037.1| - 0.23 11.4 0.5 15 5.6 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1949) DUF190 PF02641.15 gi|240103729|ref|YP_002960038.1| - 3e-39 133.2 0.1 6.2e-39 132.2 0.1 1.5 1 1 1 2 2 2 1 Uncharacterized ACR, COG1993 CRCB PF02537.15 gi|240103730|ref|YP_002960039.1| - 3.8e-25 88.0 8.0 4.7e-25 87.7 8.0 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) Prenyltrans PF00432.21 gi|240103731|ref|YP_002960040.1| - 0.0016 18.1 4.3 3.1 7.6 0.0 4.8 5 0 0 5 5 5 2 Prenyltransferase and squalene oxidase repeat Arginase PF00491.21 gi|240103732|ref|YP_002960041.1| - 4.1e-16 59.3 0.0 1.4e-15 57.5 0.0 1.7 1 1 0 1 1 1 1 Arginase family Auto_anti-p27 PF06677.12 gi|240103733|ref|YP_002960042.1| - 7.6e-14 51.6 1.5 1e-13 51.2 1.5 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|240103733|ref|YP_002960042.1| - 9.3e-05 22.4 1.1 0.016 15.2 0.2 2.3 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|240103733|ref|YP_002960042.1| - 0.00079 19.4 0.9 0.0011 18.9 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|240103733|ref|YP_002960042.1| - 0.0013 18.6 2.3 0.56 10.2 0.0 2.2 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|240103733|ref|YP_002960042.1| - 0.0018 17.9 3.7 0.0042 16.8 3.8 1.6 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|240103733|ref|YP_002960042.1| - 0.0028 17.0 3.8 0.0084 15.5 3.8 1.7 1 1 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|240103733|ref|YP_002960042.1| - 0.0031 17.4 0.5 0.0042 17.0 0.5 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DUF2116 PF09889.9 gi|240103733|ref|YP_002960042.1| - 0.011 15.7 0.3 0.018 15.0 0.3 1.3 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-C4_Topoisom PF01396.19 gi|240103733|ref|YP_002960042.1| - 0.012 15.3 0.7 0.012 15.3 0.7 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-LITAF-like PF10601.9 gi|240103733|ref|YP_002960042.1| - 0.014 15.7 0.9 0.23 11.7 0.1 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|240103733|ref|YP_002960042.1| - 0.029 14.4 0.6 0.043 13.8 0.6 1.2 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|240103733|ref|YP_002960042.1| - 0.036 13.6 2.5 0.078 12.5 2.5 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding GFA PF04828.14 gi|240103733|ref|YP_002960042.1| - 0.04 14.2 0.3 1.1 9.6 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme PspB PF06667.12 gi|240103733|ref|YP_002960042.1| - 0.076 13.1 0.7 0.13 12.3 0.7 1.4 1 0 0 1 1 1 0 Phage shock protein B HscB_4_cys PF18256.1 gi|240103733|ref|YP_002960042.1| - 0.1 12.4 1.6 0.19 11.6 1.6 1.4 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif RNA_POL_M_15KD PF02150.16 gi|240103733|ref|YP_002960042.1| - 0.11 12.4 0.7 0.21 11.5 0.7 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit A2L_zn_ribbon PF08792.10 gi|240103733|ref|YP_002960042.1| - 0.14 11.9 0.8 0.3 10.9 0.8 1.5 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-NADH-PPase PF09297.11 gi|240103733|ref|YP_002960042.1| - 0.14 11.8 5.2 1.6 8.4 5.2 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|240103733|ref|YP_002960042.1| - 0.2 11.6 5.6 5.3 7.0 5.4 2.5 1 1 1 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|240103733|ref|YP_002960042.1| - 0.22 11.5 1.9 0.36 10.8 1.9 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|240103733|ref|YP_002960042.1| - 0.29 11.3 0.1 0.29 11.3 0.1 2.8 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|240103733|ref|YP_002960042.1| - 0.36 11.0 4.1 1.2 9.3 0.5 2.4 1 1 1 2 2 2 0 Zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|240103733|ref|YP_002960042.1| - 0.73 10.0 3.3 13 6.0 0.3 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Ogr_Delta PF04606.12 gi|240103733|ref|YP_002960042.1| - 1.2 9.2 4.9 5.2 7.1 0.8 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger HTH_29 PF13551.6 gi|240103734|ref|YP_002960043.1| - 5.9e-06 26.2 0.0 6.9e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix DprA_WH PF17782.1 gi|240103734|ref|YP_002960043.1| - 0.00059 19.9 0.0 0.00073 19.6 0.0 1.1 1 0 0 1 1 1 1 DprA winged helix domain HTH_5 PF01022.20 gi|240103734|ref|YP_002960043.1| - 0.00099 18.9 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FaeA PF04703.12 gi|240103734|ref|YP_002960043.1| - 0.0011 19.2 0.0 0.0013 19.1 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_IclR PF09339.10 gi|240103734|ref|YP_002960043.1| - 0.0029 17.3 0.0 0.0035 17.1 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_7 PF02796.15 gi|240103734|ref|YP_002960043.1| - 0.0047 17.0 0.0 0.0068 16.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_40 PF14493.6 gi|240103734|ref|YP_002960043.1| - 0.0066 16.9 0.0 0.0072 16.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|240103734|ref|YP_002960043.1| - 0.008 15.6 0.0 0.0097 15.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 gi|240103734|ref|YP_002960043.1| - 0.0087 15.9 0.1 0.01 15.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|240103734|ref|YP_002960043.1| - 0.011 15.5 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 gi|240103734|ref|YP_002960043.1| - 0.011 15.3 0.0 0.023 14.2 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|240103734|ref|YP_002960043.1| - 0.034 13.7 0.1 0.049 13.2 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_15 PF12324.8 gi|240103734|ref|YP_002960043.1| - 0.041 13.8 0.0 0.048 13.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Sigma70_r3 PF04539.16 gi|240103734|ref|YP_002960043.1| - 0.042 13.9 0.1 0.072 13.2 0.1 1.5 1 1 0 1 1 1 0 Sigma-70 region 3 MarR_2 PF12802.7 gi|240103734|ref|YP_002960043.1| - 0.085 12.8 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.12 gi|240103734|ref|YP_002960043.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 IF2_N PF04760.15 gi|240103734|ref|YP_002960043.1| - 0.12 12.3 0.1 0.53 10.1 0.1 1.9 1 1 1 2 2 2 0 Translation initiation factor IF-2, N-terminal region TFIIE_beta PF02186.15 gi|240103734|ref|YP_002960043.1| - 0.12 12.7 0.1 0.24 11.7 0.1 1.7 1 1 0 1 1 1 0 TFIIE beta subunit core domain HTH_20 PF12840.7 gi|240103734|ref|YP_002960043.1| - 0.14 12.2 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|240103734|ref|YP_002960043.1| - 0.18 11.9 0.0 0.25 11.5 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|240103735|ref|YP_002960044.1| - 1.1e-18 66.8 0.0 1.9e-18 66.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|240103735|ref|YP_002960044.1| - 4.8e-08 32.5 0.1 6.9e-08 32.0 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PLDc_2 PF13091.6 gi|240103735|ref|YP_002960044.1| - 0.0015 18.4 0.7 0.0066 16.3 0.7 2.0 1 1 0 1 1 1 1 PLD-like domain RraB PF06877.11 gi|240103735|ref|YP_002960044.1| - 0.044 14.5 0.0 0.27 12.0 0.0 2.1 1 1 0 1 1 1 0 Regulator of ribonuclease activity B EF-G-binding_N PF07299.11 gi|240103735|ref|YP_002960044.1| - 0.081 13.5 0.4 0.47 11.0 0.1 2.2 2 0 0 2 2 2 0 Elongation factor G-binding protein, N-terminal Topoisom_bac PF01131.20 gi|240103736|ref|YP_002960045.1| - 6.8e-85 285.5 1.7 3.8e-84 283.1 1.7 2.0 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|240103736|ref|YP_002960045.1| - 5.6e-30 103.6 0.2 2.7e-29 101.4 0.0 2.4 2 0 0 2 2 1 1 Toprim domain DEAD PF00270.29 gi|240103736|ref|YP_002960045.1| - 7.2e-13 48.7 0.0 2.5e-12 46.9 0.0 1.9 2 0 0 2 2 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|240103736|ref|YP_002960045.1| - 6.9e-10 39.3 0.0 0.0007 19.9 0.0 4.6 5 0 0 5 5 4 2 Helicase conserved C-terminal domain zf_Rg PF17915.1 gi|240103736|ref|YP_002960045.1| - 4.6e-09 35.5 0.5 4.6e-09 35.5 0.5 2.0 2 0 0 2 2 2 1 Reverse gyrase zinc finger ResIII PF04851.15 gi|240103736|ref|YP_002960045.1| - 5.6e-08 33.0 1.0 3.1e-07 30.6 0.1 2.6 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit AAA_23 PF13476.6 gi|240103736|ref|YP_002960045.1| - 0.0011 19.5 1.1 0.0011 19.5 1.1 2.0 2 0 0 2 2 1 1 AAA domain HypA PF01155.19 gi|240103736|ref|YP_002960045.1| - 0.0017 18.4 0.9 0.055 13.5 0.1 2.6 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Toprim_4 PF13662.6 gi|240103736|ref|YP_002960045.1| - 0.0068 16.9 0.0 0.024 15.1 0.0 2.0 1 0 0 1 1 1 1 Toprim domain Zn-ribbon_8 PF09723.10 gi|240103736|ref|YP_002960045.1| - 0.02 15.0 0.8 0.02 15.0 0.8 2.6 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|240103736|ref|YP_002960045.1| - 0.032 14.2 3.2 1.1 9.3 0.2 2.3 2 0 0 2 2 2 0 Double zinc ribbon MobC PF05713.11 gi|240103736|ref|YP_002960045.1| - 0.039 14.4 0.4 0.61 10.6 0.1 3.1 3 0 0 3 3 3 0 Bacterial mobilisation protein (MobC) DUF35_N PF12172.8 gi|240103736|ref|YP_002960045.1| - 0.047 13.6 8.5 0.079 12.9 3.1 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) AAA_25 PF13481.6 gi|240103736|ref|YP_002960045.1| - 0.069 12.7 0.2 1.2 8.6 0.0 3.0 2 1 1 3 3 3 0 AAA domain Spc24 PF08286.11 gi|240103736|ref|YP_002960045.1| - 0.087 13.1 0.8 0.28 11.5 0.2 2.2 2 0 0 2 2 1 0 Spc24 subunit of Ndc80 TackOD1 PF18551.1 gi|240103736|ref|YP_002960045.1| - 0.09 12.4 2.2 0.31 10.7 0.1 2.3 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 zf-C4pol PF14260.6 gi|240103736|ref|YP_002960045.1| - 0.1 13.1 0.9 21 5.7 0.1 2.6 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DUF2935 PF11155.8 gi|240103736|ref|YP_002960045.1| - 0.12 12.7 0.4 16 5.9 0.0 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF2935) Toprim_2 PF13155.6 gi|240103736|ref|YP_002960045.1| - 0.19 12.2 0.1 4 7.9 0.0 2.7 2 0 0 2 2 2 0 Toprim-like DUF2072 PF09845.9 gi|240103736|ref|YP_002960045.1| - 0.2 11.9 0.8 7.9 6.7 0.0 3.5 3 0 0 3 3 3 0 Zn-ribbon containing protein OrfB_Zn_ribbon PF07282.11 gi|240103736|ref|YP_002960045.1| - 0.28 11.2 4.7 0.91 9.5 0.2 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain MciZ PF13072.6 gi|240103736|ref|YP_002960045.1| - 0.33 10.8 3.3 16 5.4 0.8 3.3 3 0 0 3 3 3 0 Mother cell inhibitor of FtsZ Spore_YhcN_YlaJ PF09580.10 gi|240103736|ref|YP_002960045.1| - 0.52 10.4 1.5 0.99 9.5 0.6 2.0 2 0 0 2 2 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) HIP1_clath_bdg PF16515.5 gi|240103736|ref|YP_002960045.1| - 1 10.0 4.5 0.35 11.5 0.8 2.2 2 0 0 2 2 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF87 PF01935.17 gi|240103736|ref|YP_002960045.1| - 3.1 7.8 6.4 2.4 8.2 0.2 3.3 3 1 0 3 3 3 0 Helicase HerA, central domain DUF1272 PF06906.11 gi|240103736|ref|YP_002960045.1| - 3.5 7.8 6.3 3.2 7.9 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1272) Rubredoxin_2 PF18073.1 gi|240103736|ref|YP_002960045.1| - 3.9 7.3 12.6 0.11 12.2 5.0 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|240103736|ref|YP_002960045.1| - 6.8 6.8 11.8 0.39 10.7 0.1 3.1 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|240103736|ref|YP_002960045.1| - 7.3 6.1 9.0 7.1 6.2 0.4 3.0 3 0 0 3 3 3 0 zinc-ribbon domain SWIM PF04434.17 gi|240103737|ref|YP_002960046.1| - 4.3e-06 26.3 0.0 7.5e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 SWIM zinc finger Ribosomal_L18A PF01775.17 gi|240103738|ref|YP_002960047.1| - 1.4e-11 44.6 0.1 1.9e-11 44.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|240103739|ref|YP_002960048.1| - 4.8e-70 235.0 0.0 5.9e-70 234.7 0.0 1.1 1 0 0 1 1 1 1 eIF-6 family DUF4929 PF16283.5 gi|240103739|ref|YP_002960048.1| - 0.21 10.5 0.0 0.26 10.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4929) Ribosomal_L31e PF01198.19 gi|240103740|ref|YP_002960049.1| - 2.9e-09 37.0 1.1 3.8e-09 36.7 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e DUF1796 PF08795.10 gi|240103740|ref|YP_002960049.1| - 0.13 12.2 0.1 0.17 11.9 0.1 1.1 1 0 0 1 1 1 0 Putative papain-like cysteine peptidase (DUF1796) Ribosomal_L39 PF00832.20 gi|240103741|ref|YP_002960050.1| - 5.6e-23 80.3 15.3 7e-23 80.0 15.3 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein MM_CoA_mutase PF01642.22 gi|240103742|ref|YP_002960051.1| - 3.7e-242 804.4 0.1 4.3e-242 804.2 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Lactamase_B_2 PF12706.7 gi|240103744|ref|YP_002960053.1| - 0.0025 17.4 0.3 0.012 15.1 0.3 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|240103744|ref|YP_002960053.1| - 0.003 17.5 0.0 0.0071 16.3 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain MEDS PF14417.6 gi|240103744|ref|YP_002960053.1| - 0.18 11.6 0.0 0.36 10.6 0.0 1.5 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HSP20 PF00011.21 gi|240103745|ref|YP_002960054.1| - 7.1e-20 71.1 0.4 8.7e-20 70.8 0.4 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|240103745|ref|YP_002960054.1| - 1.5e-14 53.3 0.2 2.1e-14 52.8 0.2 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA PIH1_CS PF18201.1 gi|240103745|ref|YP_002960054.1| - 0.0012 19.2 0.0 0.0018 18.6 0.0 1.3 1 0 0 1 1 1 1 PIH1 CS-like domain CS PF04969.16 gi|240103745|ref|YP_002960054.1| - 0.0017 19.3 0.0 0.0026 18.8 0.0 1.2 1 0 0 1 1 1 1 CS domain FKBP26_C PF18046.1 gi|240103745|ref|YP_002960054.1| - 0.72 10.0 4.5 3.3 7.9 0.1 2.6 3 0 0 3 3 3 0 FKBP26_C-terminal AAA PF00004.29 gi|240103746|ref|YP_002960055.1| - 7.7e-104 343.5 0.0 2.4e-51 173.6 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|240103746|ref|YP_002960055.1| - 4.7e-37 126.0 0.2 6.1e-36 122.5 0.8 2.6 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|240103746|ref|YP_002960055.1| - 3.1e-32 110.1 8.5 1.1e-18 66.8 0.2 3.0 2 1 0 2 2 2 2 AAA+ lid domain AAA_2 PF07724.14 gi|240103746|ref|YP_002960055.1| - 9.2e-18 64.9 0.0 3.6e-09 37.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|240103746|ref|YP_002960055.1| - 4.2e-17 62.3 0.5 1.3e-07 31.5 0.0 3.3 3 1 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|240103746|ref|YP_002960055.1| - 1.3e-15 58.2 2.0 6.6e-06 26.6 0.0 4.6 3 2 1 4 4 4 2 AAA ATPase domain CDC48_2 PF02933.17 gi|240103746|ref|YP_002960055.1| - 4.1e-14 52.1 0.6 3.3e-13 49.2 0.2 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|240103746|ref|YP_002960055.1| - 1.3e-13 51.4 3.7 0.00039 20.7 0.0 5.6 3 3 1 4 4 4 2 AAA domain AAA_5 PF07728.14 gi|240103746|ref|YP_002960055.1| - 1.1e-12 48.1 1.1 7.7e-05 22.7 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|240103746|ref|YP_002960055.1| - 7.2e-12 45.2 0.1 0.00016 21.0 0.0 3.1 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|240103746|ref|YP_002960055.1| - 8.7e-12 45.2 0.0 7.9e-05 22.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|240103746|ref|YP_002960055.1| - 5.7e-11 42.8 0.0 0.00022 21.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|240103746|ref|YP_002960055.1| - 9.9e-10 38.3 0.1 0.00013 21.9 0.0 2.9 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|240103746|ref|YP_002960055.1| - 1.3e-08 35.4 0.2 0.011 16.2 0.0 3.2 4 0 0 4 4 2 2 AAA domain Bac_DnaA PF00308.18 gi|240103746|ref|YP_002960055.1| - 2.2e-08 34.2 0.0 0.0033 17.3 0.0 3.7 2 2 2 4 4 4 2 Bacterial dnaA protein IstB_IS21 PF01695.17 gi|240103746|ref|YP_002960055.1| - 2.3e-08 34.0 0.0 0.0073 16.1 0.0 3.0 3 0 0 3 3 2 2 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|240103746|ref|YP_002960055.1| - 7.1e-08 32.3 0.2 0.03 14.0 0.0 4.0 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|240103746|ref|YP_002960055.1| - 8.2e-08 32.2 0.0 0.011 15.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|240103746|ref|YP_002960055.1| - 1.3e-07 32.0 0.0 0.022 15.2 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.6 gi|240103746|ref|YP_002960055.1| - 2.6e-07 31.0 0.0 0.018 15.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|240103746|ref|YP_002960055.1| - 3.2e-07 30.5 1.0 0.004 17.1 0.0 3.4 3 1 0 3 3 2 2 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|240103746|ref|YP_002960055.1| - 5.7e-07 29.1 0.4 0.035 13.5 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|240103746|ref|YP_002960055.1| - 7.1e-07 29.0 8.2 1.2 8.7 0.0 4.9 5 0 0 5 5 5 2 AAA domain DUF815 PF05673.13 gi|240103746|ref|YP_002960055.1| - 1.1e-06 28.1 0.0 0.044 12.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.12 gi|240103746|ref|YP_002960055.1| - 1.8e-06 27.9 0.1 0.99 9.3 0.0 4.2 4 0 0 4 4 4 2 NACHT domain AAA_7 PF12775.7 gi|240103746|ref|YP_002960055.1| - 2.2e-06 27.3 0.0 0.076 12.5 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region ABC_tran PF00005.27 gi|240103746|ref|YP_002960055.1| - 6e-06 26.8 0.0 0.13 12.7 0.0 2.9 2 1 0 2 2 2 2 ABC transporter TsaE PF02367.17 gi|240103746|ref|YP_002960055.1| - 9.6e-06 25.6 0.0 0.14 12.1 0.0 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|240103746|ref|YP_002960055.1| - 2.7e-05 23.6 2.1 0.26 10.5 0.1 3.5 4 0 0 4 4 3 2 Zeta toxin AAA_3 PF07726.11 gi|240103746|ref|YP_002960055.1| - 3.1e-05 23.9 0.0 0.43 10.4 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|240103746|ref|YP_002960055.1| - 5.7e-05 22.5 0.0 0.096 11.9 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.17 gi|240103746|ref|YP_002960055.1| - 5.9e-05 22.3 0.1 0.3 10.1 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|240103746|ref|YP_002960055.1| - 6.3e-05 22.5 0.8 0.35 10.3 0.0 3.1 3 0 0 3 3 2 2 PhoH-like protein ATPase PF06745.13 gi|240103746|ref|YP_002960055.1| - 0.00016 21.1 8.9 0.19 11.0 0.2 4.7 3 2 0 4 4 4 2 KaiC NB-ARC PF00931.22 gi|240103746|ref|YP_002960055.1| - 0.0002 20.6 0.0 0.78 8.9 0.0 2.7 2 0 0 2 2 2 2 NB-ARC domain AAA_17 PF13207.6 gi|240103746|ref|YP_002960055.1| - 0.00024 21.6 0.4 2.2 8.7 0.0 3.7 3 0 0 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|240103746|ref|YP_002960055.1| - 0.00027 20.7 0.2 1.3 8.7 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|240103746|ref|YP_002960055.1| - 0.00027 20.8 0.1 0.9 9.3 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|240103746|ref|YP_002960055.1| - 0.00031 21.1 1.2 0.9 9.9 0.1 3.2 2 2 1 3 3 2 2 AAA domain NTPase_1 PF03266.15 gi|240103746|ref|YP_002960055.1| - 0.0013 18.7 3.6 9.5 6.1 0.0 5.0 3 2 2 5 5 5 0 NTPase Sigma54_activ_2 PF14532.6 gi|240103746|ref|YP_002960055.1| - 0.003 17.7 0.0 4.3 7.5 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Zot PF05707.12 gi|240103746|ref|YP_002960055.1| - 0.0039 16.8 0.0 0.51 9.9 0.0 2.9 2 1 0 2 2 2 1 Zonular occludens toxin (Zot) Viral_helicase1 PF01443.18 gi|240103746|ref|YP_002960055.1| - 0.0097 15.7 0.0 0.44 10.2 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase ATP-synt_ab PF00006.25 gi|240103746|ref|YP_002960055.1| - 0.01 15.5 0.0 2.8 7.5 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SSE PF00437.20 gi|240103746|ref|YP_002960055.1| - 0.013 14.6 0.0 5.6 5.9 0.0 2.5 2 1 0 2 2 2 0 Type II/IV secretion system protein SKI PF01202.22 gi|240103746|ref|YP_002960055.1| - 0.014 15.5 1.1 13 5.9 0.0 3.9 4 0 0 4 4 3 0 Shikimate kinase Cytidylate_kin PF02224.18 gi|240103746|ref|YP_002960055.1| - 0.015 15.0 0.1 5.8 6.6 0.0 2.8 2 0 0 2 2 2 0 Cytidylate kinase DUF1905 PF08922.11 gi|240103746|ref|YP_002960055.1| - 0.016 15.3 0.3 1.9 8.6 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) DnaG_DnaB_bind PF08278.11 gi|240103746|ref|YP_002960055.1| - 0.038 14.6 1.4 14 6.3 1.3 3.2 3 0 0 3 3 2 0 DNA primase DnaG DnaB-binding IPT PF01745.16 gi|240103746|ref|YP_002960055.1| - 0.048 13.1 0.4 14 4.9 0.0 2.8 3 0 0 3 3 3 0 Isopentenyl transferase ResIII PF04851.15 gi|240103746|ref|YP_002960055.1| - 0.048 13.7 0.0 9.1 6.3 0.0 2.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit cobW PF02492.19 gi|240103746|ref|YP_002960055.1| - 0.056 13.0 0.0 16 5.1 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AFG1_ATPase PF03969.16 gi|240103746|ref|YP_002960055.1| - 0.058 12.3 0.0 6.5 5.5 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase CPT PF07931.12 gi|240103746|ref|YP_002960055.1| - 0.072 12.9 1.5 23 4.8 0.0 3.7 4 1 1 5 5 3 0 Chloramphenicol phosphotransferase-like protein DAP3 PF10236.9 gi|240103746|ref|YP_002960055.1| - 0.087 12.0 0.0 11 5.0 0.0 2.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 PduV-EutP PF10662.9 gi|240103746|ref|YP_002960055.1| - 0.094 12.5 0.0 20 4.9 0.0 2.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation EntA_Immun PF08951.10 gi|240103746|ref|YP_002960055.1| - 0.15 12.5 0.7 0.69 10.3 0.3 2.4 2 0 0 2 2 1 0 Enterocin A Immunity SelB-wing_2 PF09106.11 gi|240103746|ref|YP_002960055.1| - 0.96 9.7 8.6 7 6.9 0.1 4.4 4 1 1 5 5 3 0 Elongation factor SelB, winged helix Mago-bind PF09282.10 gi|240103746|ref|YP_002960055.1| - 1.1 9.2 4.2 38 4.3 0.0 4.3 4 0 0 4 4 4 0 Mago binding AAA_23 PF13476.6 gi|240103746|ref|YP_002960055.1| - 1.2 9.5 4.6 38 4.7 0.9 3.4 3 0 0 3 3 3 0 AAA domain GDPD PF03009.17 gi|240103750|ref|YP_002960059.1| - 2.6e-36 125.7 0.0 3.8e-34 118.6 0.0 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|240103750|ref|YP_002960059.1| - 0.0056 16.3 0.0 0.013 15.1 0.0 1.6 2 0 0 2 2 2 1 Phosphatidylinositol-specific phospholipase C, X domain DUF2201 PF09967.9 gi|240103750|ref|YP_002960059.1| - 0.019 15.1 0.1 0.032 14.4 0.1 1.4 1 0 0 1 1 1 0 VWA-like domain (DUF2201) ASL_C2 PF14698.6 gi|240103750|ref|YP_002960059.1| - 0.056 14.2 0.1 2.5 8.9 0.0 2.9 1 1 2 3 3 3 0 Argininosuccinate lyase C-terminal QRPTase_C PF01729.19 gi|240103750|ref|YP_002960059.1| - 0.16 11.7 3.4 1.3 8.8 0.1 2.1 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain GDPD PF03009.17 gi|240103751|ref|YP_002960060.1| - 7.2e-12 45.6 0.0 1.7e-10 41.1 0.0 2.1 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family MFS_1 PF07690.16 gi|240103752|ref|YP_002960061.1| - 2.3e-49 168.2 41.6 6.8e-32 110.8 13.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|240103752|ref|YP_002960061.1| - 3.8e-30 104.8 30.0 1.8e-29 102.6 30.0 1.9 1 1 0 1 1 1 1 MFS/sugar transport protein LacY_symp PF01306.19 gi|240103752|ref|YP_002960061.1| - 5.9e-07 28.6 9.3 5.9e-07 28.6 9.3 3.1 3 0 0 3 3 3 1 LacY proton/sugar symporter Sugar_tr PF00083.24 gi|240103752|ref|YP_002960061.1| - 0.00029 19.8 27.2 0.00095 18.1 4.4 2.8 1 1 1 3 3 3 2 Sugar (and other) transporter Deltameth_res PF16020.5 gi|240103752|ref|YP_002960061.1| - 0.75 9.7 3.5 2.3 8.1 0.4 3.0 2 0 0 2 2 2 0 Deltamethrin resistance MerC PF03203.14 gi|240103752|ref|YP_002960061.1| - 4.8 7.7 16.4 9.3 6.7 4.4 3.6 2 2 0 2 2 2 0 MerC mercury resistance protein MFS_3 PF05977.13 gi|240103752|ref|YP_002960061.1| - 9.6 4.5 10.5 0.48 8.8 5.0 1.5 2 0 0 2 2 2 0 Transmembrane secretion effector MFS_1 PF07690.16 gi|240103753|ref|YP_002960062.1| - 6.4e-30 104.3 37.0 7.1e-16 58.1 15.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|240103753|ref|YP_002960062.1| - 3.4e-14 52.2 22.9 4.2e-14 51.9 21.2 1.7 1 1 1 2 2 2 1 MFS/sugar transport protein Sugar_tr PF00083.24 gi|240103753|ref|YP_002960062.1| - 5.4e-07 28.8 23.5 1.4e-06 27.4 10.5 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter Peptidase_S15 PF02129.18 gi|240103754|ref|YP_002960063.1| - 7.8e-20 71.6 0.0 2.1e-15 57.1 0.0 2.1 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|240103754|ref|YP_002960063.1| - 1.9e-17 63.3 0.0 1.8e-11 43.8 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|240103754|ref|YP_002960063.1| - 1.2e-12 47.7 0.0 1.7e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|240103754|ref|YP_002960063.1| - 5.3e-12 45.9 0.0 1.4e-08 34.7 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|240103754|ref|YP_002960063.1| - 1.2e-11 45.7 0.0 3.5e-11 44.1 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|240103754|ref|YP_002960063.1| - 1e-09 38.3 0.0 2.9e-08 33.6 0.0 2.5 1 1 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|240103754|ref|YP_002960063.1| - 2.3e-06 27.4 0.0 1.2e-05 25.1 0.0 2.1 1 1 1 2 2 2 1 Serine hydrolase (FSH1) DUF829 PF05705.14 gi|240103754|ref|YP_002960063.1| - 0.00057 19.9 0.0 0.013 15.4 0.0 2.1 2 0 0 2 2 2 1 Eukaryotic protein of unknown function (DUF829) DUF676 PF05057.14 gi|240103754|ref|YP_002960063.1| - 0.00072 19.1 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Putative serine esterase (DUF676) BAAT_C PF08840.11 gi|240103754|ref|YP_002960063.1| - 0.00091 19.2 0.2 0.005 16.8 0.0 2.2 2 1 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydro_lipase PF04083.16 gi|240103754|ref|YP_002960063.1| - 0.005 16.4 0.0 0.0093 15.5 0.0 1.4 1 0 0 1 1 1 1 Partial alpha/beta-hydrolase lipase region Abhydrolase_2 PF02230.16 gi|240103754|ref|YP_002960063.1| - 0.044 13.6 0.0 0.7 9.6 0.0 2.3 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase LIP PF03583.14 gi|240103754|ref|YP_002960063.1| - 0.051 12.9 0.0 0.081 12.2 0.0 1.2 1 0 0 1 1 1 0 Secretory lipase Esterase PF00756.20 gi|240103754|ref|YP_002960063.1| - 0.095 12.3 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative esterase DUF2048 PF09752.9 gi|240103754|ref|YP_002960063.1| - 0.13 11.4 0.0 13 4.7 0.0 2.1 2 0 0 2 2 2 0 Abhydrolase domain containing 18 PAF-AH_p_II PF03403.13 gi|240103754|ref|YP_002960063.1| - 0.21 10.1 0.0 0.48 8.9 0.0 1.5 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II ABC2_membrane_3 PF12698.7 gi|240103755|ref|YP_002960064.1| - 7.1e-37 127.3 5.6 9.2e-37 126.9 5.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|240103755|ref|YP_002960064.1| - 2e-23 82.9 14.2 9.3e-21 74.2 11.4 2.2 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|240103755|ref|YP_002960064.1| - 6.6e-13 48.6 2.5 1e-12 48.0 2.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|240103755|ref|YP_002960064.1| - 0.0037 17.2 7.5 0.0037 17.2 7.5 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein Peripla_BP_1 PF00532.21 gi|240103755|ref|YP_002960064.1| - 0.01 15.3 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family DUF4153 PF13687.6 gi|240103755|ref|YP_002960064.1| - 0.064 12.9 8.4 0.13 11.9 8.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4153) SBP_bac_3 PF00497.20 gi|240103755|ref|YP_002960064.1| - 0.15 11.5 0.0 0.88 8.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 Hanta_G1 PF01567.16 gi|240103755|ref|YP_002960064.1| - 2.2 6.9 3.8 3 6.4 3.8 1.1 1 0 0 1 1 1 0 Hantavirus glycoprotein G1 ABC_tran PF00005.27 gi|240103756|ref|YP_002960065.1| - 4.5e-28 98.5 0.0 8.3e-28 97.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103756|ref|YP_002960065.1| - 2.6e-15 57.0 0.7 5.6e-08 33.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|240103756|ref|YP_002960065.1| - 5.9e-10 39.7 0.2 1.6e-09 38.3 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|240103756|ref|YP_002960065.1| - 0.00013 22.5 0.0 0.00019 22.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|240103756|ref|YP_002960065.1| - 0.00044 20.3 0.1 0.00094 19.2 0.1 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE SMC_N PF02463.19 gi|240103756|ref|YP_002960065.1| - 0.00077 19.0 0.0 0.66 9.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|240103756|ref|YP_002960065.1| - 0.00085 19.3 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|240103756|ref|YP_002960065.1| - 0.0022 18.2 0.0 0.0089 16.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|240103756|ref|YP_002960065.1| - 0.0024 17.6 0.0 0.071 12.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|240103756|ref|YP_002960065.1| - 0.0031 17.9 0.0 0.0063 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|240103756|ref|YP_002960065.1| - 0.0033 18.0 0.0 0.0073 16.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|240103756|ref|YP_002960065.1| - 0.0035 17.1 0.0 0.0093 15.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 gi|240103756|ref|YP_002960065.1| - 0.0036 17.7 0.0 0.016 15.7 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|240103756|ref|YP_002960065.1| - 0.0051 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|240103756|ref|YP_002960065.1| - 0.01 15.8 0.0 0.024 14.5 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|240103756|ref|YP_002960065.1| - 0.011 15.4 0.1 2 8.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|240103756|ref|YP_002960065.1| - 0.015 15.2 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 gi|240103756|ref|YP_002960065.1| - 0.031 14.5 0.0 0.057 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|240103756|ref|YP_002960065.1| - 0.044 13.9 0.0 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|240103756|ref|YP_002960065.1| - 0.045 13.5 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Thymidylate_kin PF02223.17 gi|240103756|ref|YP_002960065.1| - 0.053 13.2 0.0 0.19 11.4 0.0 1.8 2 0 0 2 2 2 0 Thymidylate kinase AAA_14 PF13173.6 gi|240103756|ref|YP_002960065.1| - 0.063 13.3 0.0 1.7 8.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|240103756|ref|YP_002960065.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase NACHT PF05729.12 gi|240103756|ref|YP_002960065.1| - 0.12 12.3 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|240103756|ref|YP_002960065.1| - 0.12 12.3 0.3 0.54 10.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|240103756|ref|YP_002960065.1| - 0.13 12.6 0.1 0.99 9.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|240103756|ref|YP_002960065.1| - 0.17 11.5 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF3584 PF12128.8 gi|240103756|ref|YP_002960065.1| - 0.28 8.6 0.1 0.37 8.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|240103756|ref|YP_002960065.1| - 0.32 9.6 0.0 0.49 9.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain GDC-P PF02347.16 gi|240103757|ref|YP_002960066.1| - 1.2e-12 47.4 0.0 3.5e-11 42.6 0.0 2.1 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|240103757|ref|YP_002960066.1| - 3.6e-08 32.8 0.0 6e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|240103757|ref|YP_002960066.1| - 0.00014 21.3 0.0 0.0002 20.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.19 gi|240103757|ref|YP_002960066.1| - 0.038 12.7 0.0 0.69 8.6 0.0 2.1 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain HTH_13 PF11972.8 gi|240103757|ref|YP_002960066.1| - 0.17 11.9 0.3 0.99 9.5 0.0 2.3 3 0 0 3 3 3 0 HTH DNA binding domain GDC-P PF02347.16 gi|240103758|ref|YP_002960067.1| - 1.4e-120 403.1 0.0 1.7e-120 402.8 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|240103758|ref|YP_002960067.1| - 7.8e-05 21.8 0.0 0.00013 21.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|240103758|ref|YP_002960067.1| - 0.074 12.3 0.0 0.15 11.3 0.0 1.5 1 0 0 1 1 1 0 Beta-eliminating lyase Zn_dep_PLPC PF00882.18 gi|240103759|ref|YP_002960068.1| - 1.9e-05 24.8 1.1 2.5e-05 24.3 0.2 1.6 2 0 0 2 2 2 1 Zinc dependent phospholipase C CUB PF00431.20 gi|240103759|ref|YP_002960068.1| - 0.13 12.6 0.0 0.23 11.8 0.0 1.3 1 0 0 1 1 1 0 CUB domain HAD_2 PF13419.6 gi|240103760|ref|YP_002960069.1| - 2.7e-08 34.1 0.0 5.2e-08 33.2 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|240103760|ref|YP_002960069.1| - 2e-05 25.1 0.2 4.1e-05 24.1 0.2 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240103760|ref|YP_002960069.1| - 0.00021 21.6 0.0 0.0013 19.1 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|240103760|ref|YP_002960069.1| - 0.0021 18.1 0.0 2.4 8.3 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|240103760|ref|YP_002960069.1| - 0.032 14.0 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase BPD_transp_1 PF00528.22 gi|240103761|ref|YP_002960070.1| - 3.4e-23 82.3 39.1 2.8e-15 56.5 15.4 4.0 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|240103762|ref|YP_002960071.1| - 7.1e-33 114.0 0.0 1e-32 113.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103762|ref|YP_002960071.1| - 1.3e-10 41.6 0.1 5.8e-06 26.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240103762|ref|YP_002960071.1| - 0.00048 19.6 0.0 0.0067 15.9 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|240103762|ref|YP_002960071.1| - 0.0054 16.7 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain TniB PF05621.11 gi|240103762|ref|YP_002960071.1| - 0.0076 15.7 0.1 0.11 11.9 0.1 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_16 PF13191.6 gi|240103762|ref|YP_002960071.1| - 0.0081 16.6 0.1 0.017 15.5 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|240103762|ref|YP_002960071.1| - 0.02 15.3 0.4 0.061 13.8 0.4 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|240103762|ref|YP_002960071.1| - 0.023 15.0 0.5 0.11 12.8 0.5 2.0 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|240103762|ref|YP_002960071.1| - 0.036 14.3 0.1 0.27 11.5 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RecA PF00154.21 gi|240103762|ref|YP_002960071.1| - 0.039 13.4 0.0 0.1 12.1 0.0 1.6 2 0 0 2 2 2 0 recA bacterial DNA recombination protein MIT_C PF16565.5 gi|240103762|ref|YP_002960071.1| - 0.042 13.8 0.0 0.068 13.2 0.0 1.2 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT AAA_28 PF13521.6 gi|240103762|ref|YP_002960071.1| - 0.18 12.0 0.2 0.48 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain SBP_bac_6 PF13343.6 gi|240103763|ref|YP_002960072.1| - 6.8e-28 97.7 2.0 8.5e-28 97.4 2.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|240103763|ref|YP_002960072.1| - 2e-25 90.2 1.9 2.7e-25 89.8 1.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|240103763|ref|YP_002960072.1| - 3.5e-20 72.7 0.0 5.6e-20 72.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|240103763|ref|YP_002960072.1| - 1.5e-17 64.6 8.4 2.4e-17 63.9 8.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SNF PF00209.18 gi|240103764|ref|YP_002960073.1| - 3.2e-55 187.8 37.6 4.5e-31 108.1 16.7 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF2207 PF09972.9 gi|240103766|ref|YP_002960075.1| - 0.00086 18.2 1.1 0.00086 18.2 1.1 1.8 1 1 1 2 2 2 1 Predicted membrane protein (DUF2207) TINF2_N PF14973.6 gi|240103766|ref|YP_002960075.1| - 0.0082 16.5 0.6 0.017 15.5 0.6 1.6 1 1 0 1 1 1 1 TERF1-interacting nuclear factor 2 N-terminus GRAS PF03514.14 gi|240103766|ref|YP_002960075.1| - 0.06 12.3 0.0 0.083 11.8 0.0 1.2 1 0 0 1 1 1 0 GRAS domain family P-II PF00543.22 gi|240103767|ref|YP_002960076.1| - 7.5e-29 100.3 0.4 1.8e-28 99.1 0.4 1.5 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II Glyco_hydro_57 PF03065.15 gi|240103768|ref|YP_002960077.1| - 5.5e-62 209.8 0.2 9.3e-62 209.1 0.2 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1957 PF09210.11 gi|240103768|ref|YP_002960077.1| - 2e-27 95.5 0.6 1.1e-25 90.0 0.1 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF1957) HHH_5 PF14520.6 gi|240103768|ref|YP_002960077.1| - 4.4e-10 40.0 0.8 9.9e-10 38.9 0.8 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|240103768|ref|YP_002960077.1| - 0.0047 17.1 0.1 0.012 15.9 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.9 gi|240103768|ref|YP_002960077.1| - 0.0051 16.6 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|240103768|ref|YP_002960077.1| - 0.0052 17.0 0.0 0.012 15.8 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.8 gi|240103768|ref|YP_002960077.1| - 0.014 15.7 0.2 0.047 14.0 0.2 2.0 1 0 0 1 1 1 0 IMS family HHH motif PilJ_C PF18223.1 gi|240103768|ref|YP_002960077.1| - 0.061 13.8 0.1 0.16 12.5 0.1 1.7 1 0 0 1 1 1 0 Pili PilJ C-terminal domain HHH PF00633.23 gi|240103768|ref|YP_002960077.1| - 0.4 10.6 3.2 0.64 10.0 0.1 2.7 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF202 PF02656.15 gi|240103769|ref|YP_002960078.1| - 0.59 10.6 4.3 1.2 9.6 0.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF202) FbpA PF05833.11 gi|240103770|ref|YP_002960079.1| - 1.1e-82 278.2 15.5 1.5e-82 277.8 15.5 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|240103770|ref|YP_002960079.1| - 6e-29 100.9 0.0 1.2e-28 99.9 0.0 1.6 1 0 0 1 1 1 1 NFACT protein RNA binding domain IMS_C PF11799.8 gi|240103770|ref|YP_002960079.1| - 0.0082 16.8 0.0 0.076 13.7 0.0 2.4 3 0 0 3 3 3 1 impB/mucB/samB family C-terminal domain NFACT-C PF11923.8 gi|240103770|ref|YP_002960079.1| - 0.066 13.1 0.0 0.066 13.1 0.0 2.8 3 0 0 3 3 3 0 NFACT protein C-terminal domain Ribosomal_S13 PF00416.22 gi|240103770|ref|YP_002960079.1| - 0.091 13.2 0.0 0.091 13.2 0.0 2.8 4 0 0 4 4 4 0 Ribosomal protein S13/S18 Pannexin_like PF12534.8 gi|240103770|ref|YP_002960079.1| - 0.35 9.9 1.7 0.58 9.2 1.7 1.4 1 0 0 1 1 1 0 Pannexin-like TM region of LRRC8 Nmad5 PF18757.1 gi|240103770|ref|YP_002960079.1| - 0.99 9.6 8.7 0.28 11.3 3.9 2.1 1 1 1 2 2 2 0 Nucleotide modification associated domain 5 DUF1366 PF07104.11 gi|240103770|ref|YP_002960079.1| - 3.7 7.3 6.5 0.4 10.4 1.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1366) DUF4118 PF13493.6 gi|240103771|ref|YP_002960080.1| - 0.047 13.5 0.5 0.047 13.5 0.5 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4118) LptF_LptG PF03739.14 gi|240103771|ref|YP_002960080.1| - 0.98 8.2 11.8 0.03 13.2 3.5 1.9 1 1 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG Wzy_C PF04932.15 gi|240103771|ref|YP_002960080.1| - 3 7.5 11.3 1.6 8.3 2.9 2.2 1 1 0 2 2 2 0 O-Antigen ligase Na_H_antiporter PF03553.14 gi|240103772|ref|YP_002960081.1| - 5e-75 252.5 26.5 5e-75 252.5 26.5 1.8 2 0 0 2 2 2 1 Na+/H+ antiporter family TNFR_16_TM PF18422.1 gi|240103772|ref|YP_002960081.1| - 0.31 11.0 4.5 0.8 9.7 0.9 2.9 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain GHMP_kinases_N PF00288.26 gi|240103773|ref|YP_002960082.1| - 6.3e-08 32.7 1.4 6.3e-08 32.7 1.4 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain UbiA PF01040.18 gi|240103774|ref|YP_002960083.1| - 0.0065 15.8 5.5 0.0083 15.5 5.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF2157 PF09925.9 gi|240103774|ref|YP_002960083.1| - 0.0099 15.7 3.2 0.012 15.4 3.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2157) YqhR PF11085.8 gi|240103774|ref|YP_002960083.1| - 0.088 12.7 1.4 0.095 12.6 1.4 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR MerC PF03203.14 gi|240103774|ref|YP_002960083.1| - 0.12 12.8 3.6 0.15 12.5 3.6 1.2 1 1 0 1 1 1 0 MerC mercury resistance protein DNA_ligase_A_M PF01068.21 gi|240103775|ref|YP_002960084.1| - 8.4e-67 224.8 0.7 1.4e-66 224.0 0.7 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|240103775|ref|YP_002960084.1| - 1.2e-39 136.4 0.2 2.9e-39 135.2 0.2 1.8 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|240103775|ref|YP_002960084.1| - 2.8e-22 79.2 0.1 1.2e-21 77.1 0.0 2.2 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|240103775|ref|YP_002960084.1| - 4.1e-06 27.2 0.5 6.7e-06 26.5 0.5 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|240103775|ref|YP_002960084.1| - 0.0046 16.9 0.1 0.018 15.0 0.1 2.1 1 1 0 1 1 1 1 DNA ligase OB-like domain TPR_1 PF00515.28 gi|240103775|ref|YP_002960084.1| - 0.026 14.3 0.2 0.1 12.5 0.1 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|240103775|ref|YP_002960084.1| - 0.21 11.9 0.6 11 6.4 0.1 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat Corona_NS1 PF06145.11 gi|240103775|ref|YP_002960084.1| - 0.44 10.1 1.2 0.99 9.0 1.2 1.6 1 0 0 1 1 1 0 Coronavirus nonstructural protein NS1 DUF4748 PF15932.5 gi|240103776|ref|YP_002960085.1| - 0.17 11.6 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4748) KH_7 PF17214.3 gi|240103777|ref|YP_002960086.1| - 2.8e-30 104.1 5.9 6.7e-28 96.5 1.7 2.6 2 0 0 2 2 2 2 KH domain Beta-Casp PF10996.8 gi|240103777|ref|YP_002960086.1| - 3.1e-26 91.8 0.0 5.8e-26 90.9 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|240103777|ref|YP_002960086.1| - 5e-18 64.8 0.0 1.4e-17 63.3 0.0 1.9 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|240103777|ref|YP_002960086.1| - 3.6e-10 40.2 2.7 3.9e-09 36.8 2.6 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|240103777|ref|YP_002960086.1| - 3.7e-10 39.5 0.0 6.9e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|240103777|ref|YP_002960086.1| - 5.8e-06 26.0 0.3 1.5e-05 24.6 0.3 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|240103777|ref|YP_002960086.1| - 0.00055 19.7 4.3 0.0037 17.1 0.4 2.7 1 1 1 2 2 2 1 KH domain KH_4 PF13083.6 gi|240103777|ref|YP_002960086.1| - 0.0012 18.6 0.9 0.009 15.9 0.1 2.6 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|240103777|ref|YP_002960086.1| - 0.0016 18.2 0.1 0.11 12.3 0.1 2.8 2 0 0 2 2 2 1 KH domain RPEL PF02755.15 gi|240103777|ref|YP_002960086.1| - 0.019 14.7 0.0 0.051 13.3 0.0 1.8 1 0 0 1 1 1 0 RPEL repeat Lactamase_B_3 PF13483.6 gi|240103777|ref|YP_002960086.1| - 0.12 12.2 0.0 0.33 10.8 0.0 1.7 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Proteasome PF00227.26 gi|240103778|ref|YP_002960087.1| - 2.2e-53 180.6 0.4 2.4e-53 180.5 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit AAA PF00004.29 gi|240103779|ref|YP_002960088.1| - 2e-101 335.7 0.0 5.7e-51 172.4 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|240103779|ref|YP_002960088.1| - 1e-31 108.5 1.4 2.5e-17 62.4 0.3 3.2 3 0 0 3 3 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|240103779|ref|YP_002960088.1| - 1.3e-31 108.6 0.3 3.5e-30 104.0 1.0 2.9 3 0 0 3 3 3 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|240103779|ref|YP_002960088.1| - 2.9e-17 62.8 0.0 2e-08 34.1 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|240103779|ref|YP_002960088.1| - 5.7e-16 59.4 0.3 6.2e-06 26.7 0.0 4.2 3 2 1 4 4 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|240103779|ref|YP_002960088.1| - 8e-16 58.6 0.0 2.1e-08 34.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|240103779|ref|YP_002960088.1| - 4.4e-14 52.0 0.2 1.1e-13 50.7 0.2 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|240103779|ref|YP_002960088.1| - 1.4e-13 51.3 0.1 0.00043 20.6 0.0 4.4 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|240103779|ref|YP_002960088.1| - 1.2e-12 47.8 0.3 6.7e-05 22.2 0.0 3.7 4 0 0 4 4 4 2 TIP49 P-loop domain AAA_5 PF07728.14 gi|240103779|ref|YP_002960088.1| - 1.3e-11 44.6 0.5 0.00013 22.0 0.1 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|240103779|ref|YP_002960088.1| - 3.1e-11 43.4 0.0 8.1e-05 22.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|240103779|ref|YP_002960088.1| - 3e-09 37.2 0.0 0.0024 18.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|240103779|ref|YP_002960088.1| - 3.4e-08 33.4 0.0 0.0075 16.0 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|240103779|ref|YP_002960088.1| - 4.4e-08 33.2 0.0 0.0027 17.6 0.0 3.3 3 0 0 3 3 3 2 Bacterial dnaA protein AAA_24 PF13479.6 gi|240103779|ref|YP_002960088.1| - 8.7e-08 32.1 0.0 0.012 15.4 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|240103779|ref|YP_002960088.1| - 1e-07 32.6 0.0 0.021 15.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|240103779|ref|YP_002960088.1| - 1.5e-07 31.2 0.3 0.021 14.5 0.1 3.8 3 1 0 3 3 3 2 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|240103779|ref|YP_002960088.1| - 3e-07 30.8 0.0 0.031 14.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|240103779|ref|YP_002960088.1| - 5.7e-07 29.1 0.1 0.036 13.4 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|240103779|ref|YP_002960088.1| - 9.8e-07 29.2 0.0 0.059 13.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|240103779|ref|YP_002960088.1| - 1.5e-06 27.6 0.0 0.028 13.6 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|240103779|ref|YP_002960088.1| - 1.7e-06 28.2 0.0 0.011 15.7 0.0 3.0 2 1 0 2 2 2 2 ATPase domain predominantly from Archaea Vps4_C PF09336.10 gi|240103779|ref|YP_002960088.1| - 1.7e-06 27.9 0.1 0.0016 18.4 0.0 2.9 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_25 PF13481.6 gi|240103779|ref|YP_002960088.1| - 4e-06 26.5 2.7 0.56 9.8 0.5 4.3 3 1 0 3 3 3 2 AAA domain AAA_7 PF12775.7 gi|240103779|ref|YP_002960088.1| - 4.2e-06 26.4 0.0 0.095 12.2 0.0 2.7 2 2 0 2 2 2 2 P-loop containing dynein motor region ATPase PF06745.13 gi|240103779|ref|YP_002960088.1| - 5.4e-06 25.9 1.8 0.5 9.7 0.0 4.2 2 2 2 4 4 4 2 KaiC NACHT PF05729.12 gi|240103779|ref|YP_002960088.1| - 1.5e-05 24.9 0.0 1 9.3 0.0 3.9 4 0 0 4 4 4 2 NACHT domain TsaE PF02367.17 gi|240103779|ref|YP_002960088.1| - 2e-05 24.6 0.0 0.31 11.1 0.0 2.7 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|240103779|ref|YP_002960088.1| - 2.8e-05 23.5 0.0 0.3 10.3 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin ABC_tran PF00005.27 gi|240103779|ref|YP_002960088.1| - 3.3e-05 24.4 0.0 0.39 11.2 0.0 2.8 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.11 gi|240103779|ref|YP_002960088.1| - 6.1e-05 22.9 0.0 0.38 10.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|240103779|ref|YP_002960088.1| - 7.9e-05 21.9 0.1 0.35 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|240103779|ref|YP_002960088.1| - 8e-05 22.2 0.2 0.38 10.2 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein DUF2075 PF09848.9 gi|240103779|ref|YP_002960088.1| - 0.00013 21.3 0.0 0.19 10.9 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|240103779|ref|YP_002960088.1| - 0.00026 20.8 0.2 1.2 8.8 0.0 3.0 2 1 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|240103779|ref|YP_002960088.1| - 0.0003 20.1 0.0 0.94 8.6 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain AAA_11 PF13086.6 gi|240103779|ref|YP_002960088.1| - 0.00061 19.6 0.0 1 9.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|240103779|ref|YP_002960088.1| - 0.00078 19.9 0.1 3.2 8.2 0.0 3.5 3 0 0 3 3 3 1 AAA domain SKI PF01202.22 gi|240103779|ref|YP_002960088.1| - 0.0015 18.7 0.0 9.1 6.4 0.0 3.9 4 0 0 4 4 3 0 Shikimate kinase NTPase_1 PF03266.15 gi|240103779|ref|YP_002960088.1| - 0.0016 18.4 3.0 7.2 6.5 0.0 4.7 3 2 2 5 5 5 0 NTPase AAA_19 PF13245.6 gi|240103779|ref|YP_002960088.1| - 0.0016 18.8 2.8 2.9 8.2 0.1 3.3 2 2 1 3 3 3 2 AAA domain Viral_helicase1 PF01443.18 gi|240103779|ref|YP_002960088.1| - 0.0025 17.6 0.0 0.18 11.5 0.0 2.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Sigma54_activ_2 PF14532.6 gi|240103779|ref|YP_002960088.1| - 0.0059 16.7 0.0 6 7.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|240103779|ref|YP_002960088.1| - 0.0063 15.6 0.0 3.3 6.7 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein Zot PF05707.12 gi|240103779|ref|YP_002960088.1| - 0.011 15.4 0.0 0.71 9.5 0.0 2.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Cytidylate_kin PF02224.18 gi|240103779|ref|YP_002960088.1| - 0.02 14.7 0.1 6.1 6.5 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase AFG1_ATPase PF03969.16 gi|240103779|ref|YP_002960088.1| - 0.025 13.5 0.0 6 5.6 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase TniB PF05621.11 gi|240103779|ref|YP_002960088.1| - 0.03 13.7 0.0 17 4.8 0.0 3.3 2 1 1 3 3 3 0 Bacterial TniB protein IPT PF01745.16 gi|240103779|ref|YP_002960088.1| - 0.047 13.1 0.2 15 4.9 0.0 2.9 3 0 0 3 3 3 0 Isopentenyl transferase cobW PF02492.19 gi|240103779|ref|YP_002960088.1| - 0.07 12.7 0.0 17 5.0 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DAP3 PF10236.9 gi|240103779|ref|YP_002960088.1| - 0.09 11.9 0.0 12 4.9 0.0 2.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Polysacc_deac_3 PF15421.6 gi|240103779|ref|YP_002960088.1| - 0.096 11.2 0.0 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Putative polysaccharide deacetylase PduV-EutP PF10662.9 gi|240103779|ref|YP_002960088.1| - 0.13 12.0 0.0 22 4.8 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation CPT PF07931.12 gi|240103779|ref|YP_002960088.1| - 0.14 12.0 0.0 31 4.4 0.0 2.8 2 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein ANAPC3 PF12895.7 gi|240103781|ref|YP_002960090.1| - 0.039 14.2 0.0 15 5.9 0.0 3.1 3 1 0 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 Herpes_pp85 PF04637.12 gi|240103781|ref|YP_002960090.1| - 0.27 9.6 3.7 0.36 9.2 3.7 1.2 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) SR-25 PF10500.9 gi|240103781|ref|YP_002960090.1| - 9.2 5.8 19.0 13 5.3 19.0 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein PNP_UDP_1 PF01048.20 gi|240103782|ref|YP_002960091.1| - 6.5e-46 156.5 0.7 8e-46 156.2 0.7 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Memo PF01875.17 gi|240103783|ref|YP_002960092.1| - 8.1e-72 241.6 0.0 9.2e-72 241.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|240103783|ref|YP_002960092.1| - 8.6e-06 25.0 0.0 1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Polbeta PF18765.1 gi|240103784|ref|YP_002960093.1| - 7.8e-17 61.2 0.0 1.2e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|240103784|ref|YP_002960093.1| - 2.7e-11 43.6 0.0 3.2e-11 43.4 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain GHMP_kinases_N PF00288.26 gi|240103785|ref|YP_002960094.1| - 2.5e-16 59.6 2.6 5.4e-16 58.6 2.6 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|240103785|ref|YP_002960094.1| - 2.7e-14 53.3 0.5 2.7e-14 53.3 0.5 2.4 2 1 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|240103785|ref|YP_002960094.1| - 0.0017 17.9 0.2 0.0059 16.1 0.0 2.0 2 0 0 2 2 2 1 Galactokinase galactose-binding signature DUF2150 PF09920.9 gi|240103785|ref|YP_002960094.1| - 0.13 12.2 0.3 2.5 8.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2150) AA_kinase PF00696.28 gi|240103786|ref|YP_002960095.1| - 1.9e-42 145.6 0.0 2.1e-42 145.4 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family SapB_2 PF03489.17 gi|240103786|ref|YP_002960095.1| - 0.091 12.9 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Saposin-like type B, region 2 MoCF_biosynth PF00994.24 gi|240103788|ref|YP_002960097.1| - 1e-36 125.8 0.0 1.5e-36 125.2 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain AFOR_C PF01314.18 gi|240103789|ref|YP_002960098.1| - 5e-129 430.6 0.2 5.9e-129 430.4 0.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|240103789|ref|YP_002960098.1| - 6.3e-68 228.5 0.2 9e-68 228.0 0.2 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Na_H_Exchanger PF00999.21 gi|240103791|ref|YP_002960100.1| - 7e-47 160.0 38.0 9e-47 159.7 38.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.28 gi|240103792|ref|YP_002960101.1| - 9.5e-13 48.4 7.6 2.2e-06 28.0 0.4 2.2 2 0 0 2 2 2 2 CBS domain ATPase PF06745.13 gi|240103793|ref|YP_002960102.1| - 4.3e-51 173.5 0.0 4.9e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|240103793|ref|YP_002960102.1| - 5e-12 45.8 0.0 6.6e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|240103793|ref|YP_002960102.1| - 2.5e-06 26.4 0.3 0.0096 14.6 0.2 2.0 2 0 0 2 2 2 2 GvpD gas vesicle protein PAXNEB PF05625.11 gi|240103793|ref|YP_002960102.1| - 5e-06 25.9 0.2 0.00097 18.4 0.1 2.0 1 1 1 2 2 2 2 PAXNEB protein AAA_24 PF13479.6 gi|240103793|ref|YP_002960102.1| - 1.1e-05 25.3 0.0 0.0012 18.6 0.0 2.6 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|240103793|ref|YP_002960102.1| - 1.6e-05 24.7 0.1 4.5e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|240103793|ref|YP_002960102.1| - 7.5e-05 22.2 0.0 0.0001 21.8 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain Rad51 PF08423.11 gi|240103793|ref|YP_002960102.1| - 0.00014 21.2 0.0 0.06 12.6 0.0 2.2 2 0 0 2 2 2 2 Rad51 AAA_22 PF13401.6 gi|240103793|ref|YP_002960102.1| - 0.00036 20.8 0.0 0.00055 20.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|240103793|ref|YP_002960102.1| - 0.00041 19.9 0.1 0.00063 19.3 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_14 PF13173.6 gi|240103793|ref|YP_002960102.1| - 0.0027 17.7 0.0 0.015 15.3 0.0 2.0 1 1 1 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|240103793|ref|YP_002960102.1| - 0.0086 15.4 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) TIP49 PF06068.13 gi|240103793|ref|YP_002960102.1| - 0.019 14.2 0.9 0.034 13.4 0.2 1.6 2 0 0 2 2 2 0 TIP49 P-loop domain NACHT PF05729.12 gi|240103793|ref|YP_002960102.1| - 0.022 14.7 0.0 0.052 13.5 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.6 gi|240103793|ref|YP_002960102.1| - 0.025 15.0 0.0 0.041 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain MEDS PF14417.6 gi|240103793|ref|YP_002960102.1| - 0.025 14.4 0.0 0.1 12.5 0.0 1.8 1 1 1 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_30 PF13604.6 gi|240103793|ref|YP_002960102.1| - 0.034 13.9 0.0 0.082 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|240103793|ref|YP_002960102.1| - 0.034 13.6 0.2 0.22 10.9 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_5 PF07728.14 gi|240103793|ref|YP_002960102.1| - 0.039 13.9 0.0 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|240103793|ref|YP_002960102.1| - 0.041 14.0 0.0 0.059 13.5 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|240103793|ref|YP_002960102.1| - 0.068 13.6 0.4 0.13 12.7 0.4 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|240103793|ref|YP_002960102.1| - 0.13 12.5 0.1 0.71 10.1 0.0 2.0 2 1 0 2 2 2 0 AAA domain DNA_pol3_delta2 PF13177.6 gi|240103793|ref|YP_002960102.1| - 0.17 11.7 0.2 2.5 7.9 0.0 2.4 2 1 1 3 3 3 0 DNA polymerase III, delta subunit AAA_19 PF13245.6 gi|240103793|ref|YP_002960102.1| - 0.18 12.2 0.0 0.36 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain HGTP_anticodon PF03129.20 gi|240103794|ref|YP_002960103.1| - 2.3e-24 85.4 0.9 9.2e-24 83.4 0.1 2.4 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|240103794|ref|YP_002960103.1| - 9.2e-12 45.3 0.2 2.2e-10 40.8 0.1 2.8 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|240103794|ref|YP_002960103.1| - 1.3e-05 24.4 0.9 0.043 12.9 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) DNA_RNApol_7kD PF03604.13 gi|240103794|ref|YP_002960103.1| - 0.027 14.1 2.8 1.4 8.6 0.3 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|240103794|ref|YP_002960103.1| - 0.045 13.9 2.7 1.1 9.4 2.9 2.4 1 1 1 2 2 2 0 Zinc ribbon domain tRNA-synt_2d PF01409.20 gi|240103794|ref|YP_002960103.1| - 0.065 12.7 0.2 0.79 9.2 0.0 2.8 2 1 0 2 2 2 0 tRNA synthetases class II core domain (F) HypA PF01155.19 gi|240103794|ref|YP_002960103.1| - 0.097 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|240103794|ref|YP_002960103.1| - 0.22 11.0 0.3 4.8 6.7 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|240103794|ref|YP_002960103.1| - 0.3 11.0 1.1 16 5.5 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain LSM PF01423.22 gi|240103795|ref|YP_002960104.1| - 2.3e-16 59.2 0.1 2.5e-16 59.1 0.1 1.0 1 0 0 1 1 1 1 LSM domain Ribosomal_L37e PF01907.19 gi|240103796|ref|YP_002960105.1| - 9.8e-22 76.9 12.8 1.2e-21 76.6 12.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|240103796|ref|YP_002960105.1| - 0.028 14.5 1.6 0.035 14.1 1.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|240103796|ref|YP_002960105.1| - 0.065 13.3 0.7 0.08 13.0 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF72 PF01904.18 gi|240103797|ref|YP_002960106.1| - 1.5e-38 133.1 0.7 1.8e-38 132.8 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 A1_Propeptide PF07966.12 gi|240103797|ref|YP_002960106.1| - 0.093 12.6 0.3 0.24 11.3 0.0 1.8 2 0 0 2 2 2 0 A1 Propeptide NurA PF09376.10 gi|240103798|ref|YP_002960107.1| - 8.6e-37 127.1 1.1 1.1e-36 126.7 1.1 1.1 1 0 0 1 1 1 1 NurA domain SMC_N PF02463.19 gi|240103799|ref|YP_002960108.1| - 1.6e-13 50.6 34.8 3.6e-09 36.4 0.1 2.5 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|240103799|ref|YP_002960108.1| - 8.2e-08 32.3 60.3 74 2.9 60.3 4.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_21 PF13304.6 gi|240103799|ref|YP_002960108.1| - 3.9e-07 30.2 14.3 0.00016 21.6 0.1 4.4 3 2 1 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad50_zn_hook PF04423.14 gi|240103799|ref|YP_002960108.1| - 6.2e-07 29.2 0.8 6.2e-07 29.2 0.8 10.1 12 3 2 14 14 14 1 Rad50 zinc hook motif AAA_29 PF13555.6 gi|240103799|ref|YP_002960108.1| - 1.1e-05 25.1 0.0 1.8e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|240103799|ref|YP_002960108.1| - 9.6e-05 23.0 141.5 1.2e+03 -0.2 12.2 7.9 1 1 1 3 3 1 0 AAA domain NPV_P10 PF05531.12 gi|240103799|ref|YP_002960108.1| - 0.00028 21.3 13.6 35 4.9 0.0 7.5 6 2 1 8 8 8 0 Nucleopolyhedrovirus P10 protein ABC_tran PF00005.27 gi|240103799|ref|YP_002960108.1| - 0.00033 21.2 13.4 0.031 14.8 0.0 5.5 2 1 0 2 2 2 1 ABC transporter GAS PF13851.6 gi|240103799|ref|YP_002960108.1| - 0.0021 17.5 14.6 0.0021 17.5 14.6 7.2 3 3 4 7 7 7 2 Growth-arrest specific micro-tubule binding SbcCD_C PF13558.6 gi|240103799|ref|YP_002960108.1| - 0.0092 16.2 0.0 0.022 15.0 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Sec34 PF04136.15 gi|240103799|ref|YP_002960108.1| - 0.013 15.4 3.6 0.013 15.4 3.6 7.3 2 2 3 7 7 7 0 Sec34-like family VRR_NUC PF08774.11 gi|240103799|ref|YP_002960108.1| - 0.013 15.5 0.1 0.055 13.5 0.1 2.1 1 0 0 1 1 1 0 VRR-NUC domain DUF4315 PF14193.6 gi|240103799|ref|YP_002960108.1| - 0.02 14.9 1.3 0.02 14.9 1.3 12.0 6 3 6 12 12 9 0 Domain of unknown function (DUF4315) MbeD_MobD PF04899.12 gi|240103799|ref|YP_002960108.1| - 0.2 11.8 4.5 0.37 10.9 0.8 3.5 2 1 1 3 3 3 0 MbeD/MobD like RsgA_GTPase PF03193.16 gi|240103799|ref|YP_002960108.1| - 0.26 11.2 5.8 0.28 11.1 0.0 3.5 3 0 0 3 3 3 0 RsgA GTPase DUF1664 PF07889.12 gi|240103799|ref|YP_002960108.1| - 0.49 10.4 49.4 0.55 10.3 1.6 7.9 4 3 3 9 9 9 0 Protein of unknown function (DUF1664) MscS_porin PF12795.7 gi|240103799|ref|YP_002960108.1| - 0.62 9.6 72.0 0.12 11.9 12.5 5.0 3 1 0 3 3 3 0 Mechanosensitive ion channel porin domain TPR_19 PF14559.6 gi|240103799|ref|YP_002960108.1| - 1.1 9.8 15.7 0.97 10.0 0.1 3.9 2 1 1 3 3 3 0 Tetratricopeptide repeat MCPsignal PF00015.21 gi|240103799|ref|YP_002960108.1| - 1.2 8.9 14.7 5.9 6.7 0.1 4.9 3 1 0 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain AAA_13 PF13166.6 gi|240103799|ref|YP_002960108.1| - 2 7.0 79.9 0.32 9.6 0.0 5.8 1 1 6 8 8 8 0 AAA domain Spc7 PF08317.11 gi|240103799|ref|YP_002960108.1| - 4 6.2 118.1 0.25 10.2 14.8 7.0 2 2 4 6 6 6 0 Spc7 kinetochore protein Snapin_Pallidin PF14712.6 gi|240103799|ref|YP_002960108.1| - 5 7.6 60.4 2.3 8.7 0.8 9.0 3 1 5 8 8 8 0 Snapin/Pallidin Metallophos_2 PF12850.7 gi|240103800|ref|YP_002960109.1| - 7.7e-15 55.5 0.0 2e-14 54.1 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|240103800|ref|YP_002960109.1| - 1.1e-12 48.9 0.1 1.9e-12 48.1 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF87 PF01935.17 gi|240103801|ref|YP_002960110.1| - 6.5e-43 147.4 0.0 1.1e-42 146.7 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|240103801|ref|YP_002960110.1| - 6.5e-09 34.9 0.1 4.8e-05 22.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|240103801|ref|YP_002960110.1| - 1e-08 35.2 0.4 1.1e-07 31.9 0.1 2.8 2 0 0 2 2 2 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|240103801|ref|YP_002960110.1| - 0.02 13.9 0.0 0.13 11.1 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Pterin_bind PF00809.22 gi|240103802|ref|YP_002960111.1| - 7.9e-05 22.5 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.6 gi|240103802|ref|YP_002960111.1| - 0.0001 22.3 0.0 0.00029 20.8 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4346) Beta_helix PF13229.6 gi|240103804|ref|YP_002960113.1| - 3.6e-19 69.2 72.4 1.3e-08 34.8 12.5 7.8 6 3 2 8 8 8 5 Right handed beta helix region BiPBP_C PF06832.12 gi|240103804|ref|YP_002960113.1| - 2.5e-08 33.8 0.5 0.65 10.1 0.0 6.6 6 0 0 6 6 6 2 Penicillin-Binding Protein C-terminus Family Pectate_lyase_3 PF12708.7 gi|240103804|ref|YP_002960113.1| - 1.2e-05 25.3 1.4 1.2e-05 25.3 1.4 6.3 6 1 0 6 6 6 3 Pectate lyase superfamily protein Ig_3 PF13927.6 gi|240103804|ref|YP_002960113.1| - 0.00045 20.8 15.3 0.038 14.6 0.5 6.6 6 0 0 6 6 6 2 Immunoglobulin domain DUF2846 PF11008.8 gi|240103804|ref|YP_002960113.1| - 0.0064 16.5 0.0 0.068 13.2 0.0 2.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2846) PKD PF00801.20 gi|240103804|ref|YP_002960113.1| - 0.0075 16.1 28.0 0.017 14.9 2.5 5.7 6 0 0 6 6 6 2 PKD domain DUF4959 PF16323.5 gi|240103804|ref|YP_002960113.1| - 0.015 15.6 0.0 0.62 10.4 0.0 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4959) DUF4625 PF15418.6 gi|240103804|ref|YP_002960113.1| - 0.026 14.8 0.1 5 7.4 0.0 4.5 5 0 0 5 5 5 0 Domain of unknown function (DUF4625) Enolase_like_N PF18374.1 gi|240103804|ref|YP_002960113.1| - 0.072 12.5 0.2 4 6.9 0.0 2.9 2 0 0 2 2 2 0 Enolase N-terminal domain-like Big_3_2 PF12245.8 gi|240103804|ref|YP_002960113.1| - 0.11 12.8 0.1 30 4.9 0.0 3.9 3 0 0 3 3 3 0 Bacterial Ig-like domain SRI PF08236.11 gi|240103804|ref|YP_002960113.1| - 0.32 11.2 6.5 0.74 10.0 6.1 1.7 1 1 1 2 2 2 0 SRI (Set2 Rpb1 interacting) domain Y_Y_Y PF07495.13 gi|240103804|ref|YP_002960113.1| - 0.39 10.7 7.8 33 4.5 0.0 6.1 7 0 0 7 7 7 0 Y_Y_Y domain TPR_12 PF13424.6 gi|240103805|ref|YP_002960114.1| - 7.6e-16 58.2 5.0 8.8e-06 25.9 0.1 4.7 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|240103805|ref|YP_002960114.1| - 2.2e-13 49.2 10.7 0.0016 18.4 0.2 6.7 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|240103805|ref|YP_002960114.1| - 3.2e-09 36.2 1.1 0.0081 16.1 0.0 4.3 3 1 0 3 3 3 2 Tetratricopeptide repeat HTH_20 PF12840.7 gi|240103805|ref|YP_002960114.1| - 1.6e-08 34.5 0.7 1.6e-08 34.5 0.7 2.3 3 0 0 3 3 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|240103805|ref|YP_002960114.1| - 3.4e-08 33.2 0.4 3e-07 30.2 1.4 2.1 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family TPR_8 PF13181.6 gi|240103805|ref|YP_002960114.1| - 1.5e-07 31.1 19.5 0.0053 16.9 0.0 5.8 6 0 0 6 6 4 3 Tetratricopeptide repeat TrmB PF01978.19 gi|240103805|ref|YP_002960114.1| - 2.3e-07 30.6 0.5 0.0013 18.6 0.1 3.4 3 0 0 3 3 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|240103805|ref|YP_002960114.1| - 3.9e-07 29.9 1.7 2.1e-06 27.5 0.2 2.6 2 0 0 2 2 2 1 MarR family TPR_MalT PF17874.1 gi|240103805|ref|YP_002960114.1| - 4.9e-07 29.4 0.1 4e-06 26.4 0.1 2.3 1 1 2 3 3 3 1 MalT-like TPR region TPR_19 PF14559.6 gi|240103805|ref|YP_002960114.1| - 1.1e-06 29.0 2.2 0.18 12.4 0.1 4.4 4 1 1 5 5 4 2 Tetratricopeptide repeat AAA_16 PF13191.6 gi|240103805|ref|YP_002960114.1| - 1.4e-06 28.8 1.0 7.5e-05 23.2 1.0 2.8 1 1 0 1 1 1 1 AAA ATPase domain TPR_1 PF00515.28 gi|240103805|ref|YP_002960114.1| - 2e-06 27.3 15.3 0.001 18.8 0.0 5.4 7 0 0 7 7 4 3 Tetratricopeptide repeat MarR PF01047.22 gi|240103805|ref|YP_002960114.1| - 5.8e-06 26.2 0.2 0.00069 19.5 0.1 2.5 2 0 0 2 2 2 1 MarR family TPR_16 PF13432.6 gi|240103805|ref|YP_002960114.1| - 6.2e-06 26.8 0.2 0.054 14.2 0.0 4.6 5 0 0 5 5 4 1 Tetratricopeptide repeat HTH_24 PF13412.6 gi|240103805|ref|YP_002960114.1| - 1e-05 25.0 0.2 3.4e-05 23.3 0.2 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TPR_14 PF13428.6 gi|240103805|ref|YP_002960114.1| - 1.2e-05 25.7 3.0 0.59 11.1 0.1 5.9 6 0 0 6 6 4 1 Tetratricopeptide repeat AAA_22 PF13401.6 gi|240103805|ref|YP_002960114.1| - 7.7e-05 23.0 0.0 0.00065 20.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|240103805|ref|YP_002960114.1| - 0.00018 20.8 0.0 0.44 9.7 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain ArsR PF09824.9 gi|240103805|ref|YP_002960114.1| - 0.00041 20.0 0.0 0.0015 18.1 0.0 2.0 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_IclR PF09339.10 gi|240103805|ref|YP_002960114.1| - 0.00057 19.6 1.4 0.0088 15.8 0.5 2.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain ATPase_2 PF01637.18 gi|240103805|ref|YP_002960114.1| - 0.00064 19.7 3.9 0.098 12.6 0.0 3.8 3 1 0 3 3 3 1 ATPase domain predominantly from Archaea HTH_AsnC-type PF13404.6 gi|240103805|ref|YP_002960114.1| - 0.00092 19.0 0.3 0.0048 16.7 0.4 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|240103805|ref|YP_002960114.1| - 0.0015 18.4 0.4 0.02 14.8 0.1 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|240103805|ref|YP_002960114.1| - 0.0019 18.2 0.6 0.037 14.1 0.0 3.0 3 0 0 3 3 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_28 PF13518.6 gi|240103805|ref|YP_002960114.1| - 0.0027 17.8 0.1 0.15 12.2 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain PadR PF03551.14 gi|240103805|ref|YP_002960114.1| - 0.005 16.8 0.6 0.21 11.6 0.1 3.1 3 0 0 3 3 2 1 Transcriptional regulator PadR-like family AAA_14 PF13173.6 gi|240103805|ref|YP_002960114.1| - 0.0053 16.8 0.0 0.024 14.7 0.0 2.2 2 0 0 2 2 1 1 AAA domain AAA PF00004.29 gi|240103805|ref|YP_002960114.1| - 0.0054 17.2 0.0 0.012 16.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_11 PF08279.12 gi|240103805|ref|YP_002960114.1| - 0.0065 16.4 0.1 0.053 13.5 0.1 2.6 2 0 0 2 2 1 1 HTH domain HTH_27 PF13463.6 gi|240103805|ref|YP_002960114.1| - 0.0067 16.9 0.1 0.3 11.6 0.1 2.9 3 0 0 3 3 2 1 Winged helix DNA-binding domain BCL_N PF04714.13 gi|240103805|ref|YP_002960114.1| - 0.0083 16.2 0.2 0.021 14.9 0.2 1.6 1 0 0 1 1 1 1 BCL7, N-terminal conserver region RPN7 PF10602.9 gi|240103805|ref|YP_002960114.1| - 0.009 15.7 2.7 0.31 10.8 0.0 3.1 1 1 1 3 3 3 1 26S proteasome subunit RPN7 DUF4423 PF14394.6 gi|240103805|ref|YP_002960114.1| - 0.011 15.4 0.4 0.044 13.5 0.0 2.2 2 0 0 2 2 1 0 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|240103805|ref|YP_002960114.1| - 0.013 15.7 0.2 0.4 10.9 0.0 2.5 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain AAA_24 PF13479.6 gi|240103805|ref|YP_002960114.1| - 0.027 14.2 0.0 0.063 13.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain NACHT PF05729.12 gi|240103805|ref|YP_002960114.1| - 0.032 14.1 0.0 0.81 9.6 0.0 2.5 2 0 0 2 2 2 0 NACHT domain KAP_NTPase PF07693.14 gi|240103805|ref|YP_002960114.1| - 0.039 13.2 1.1 0.49 9.6 0.2 2.3 2 0 0 2 2 2 0 KAP family P-loop domain TPR_6 PF13174.6 gi|240103805|ref|YP_002960114.1| - 0.059 14.0 3.8 5.2 7.9 0.0 4.8 4 1 0 4 4 3 0 Tetratricopeptide repeat HTH_36 PF13730.6 gi|240103805|ref|YP_002960114.1| - 0.073 13.0 0.2 0.41 10.6 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain ANAPC3 PF12895.7 gi|240103805|ref|YP_002960114.1| - 0.078 13.2 4.1 14 6.0 0.2 3.8 3 1 0 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.7 gi|240103805|ref|YP_002960114.1| - 0.088 12.9 0.5 0.31 11.1 0.2 2.1 1 1 1 2 2 2 0 Domain of Unknown Function (DUF3856) HTH_38 PF13936.6 gi|240103805|ref|YP_002960114.1| - 0.12 12.2 0.6 1.1 9.0 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|240103805|ref|YP_002960114.1| - 0.14 12.3 0.0 4.6 7.5 0.0 2.4 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC TPR_10 PF13374.6 gi|240103805|ref|YP_002960114.1| - 0.15 12.0 4.7 50 4.0 0.0 4.7 5 0 0 5 5 5 0 Tetratricopeptide repeat HTH_1 PF00126.27 gi|240103805|ref|YP_002960114.1| - 0.17 11.9 0.0 0.47 10.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family RsgA_GTPase PF03193.16 gi|240103805|ref|YP_002960114.1| - 0.18 11.7 0.0 0.38 10.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase CARDB PF07705.11 gi|240103806|ref|YP_002960115.1| - 1.2e-158 516.8 28.2 4.3e-16 59.0 0.0 19.8 18 1 1 19 19 19 12 CARDB PKD PF00801.20 gi|240103806|ref|YP_002960115.1| - 3.5e-19 68.4 24.4 6.5e-12 45.1 3.8 8.0 9 1 1 10 10 10 2 PKD domain CarboxypepD_reg PF13620.6 gi|240103806|ref|YP_002960115.1| - 4e-08 33.4 1.3 4e-08 33.4 1.3 7.3 7 0 0 7 7 6 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|240103806|ref|YP_002960115.1| - 5.5e-05 23.1 0.2 0.00053 19.9 0.2 2.8 1 0 0 1 1 1 1 CarboxypepD_reg-like domain RGI_lyase PF18370.1 gi|240103806|ref|YP_002960115.1| - 0.00011 22.4 1.6 0.00071 19.8 0.3 3.1 3 0 0 3 3 2 1 Rhamnogalacturonan I lyases beta-sheet domain SpaA PF17802.1 gi|240103806|ref|YP_002960115.1| - 0.0012 19.1 0.4 0.012 15.9 0.4 2.8 2 0 0 2 2 1 1 Prealbumin-like fold domain DUF2012 PF09430.10 gi|240103806|ref|YP_002960115.1| - 0.0016 18.6 0.1 0.014 15.5 0.0 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2012) Big_3_4 PF13754.6 gi|240103806|ref|YP_002960115.1| - 0.0017 18.1 1.7 2.5 7.9 0.0 4.6 4 0 0 4 4 4 1 Domain of unknown function Lysyl_oxidase PF01186.17 gi|240103806|ref|YP_002960115.1| - 0.0021 17.8 6.0 0.18 11.5 0.1 5.5 6 0 0 6 6 6 1 Lysyl oxidase DUF756 PF05506.12 gi|240103806|ref|YP_002960115.1| - 0.003 18.5 6.6 33 5.5 0.1 7.5 7 1 0 7 7 4 0 Domain of unknown function (DUF756) Big_7 PF17957.1 gi|240103806|ref|YP_002960115.1| - 0.0085 16.8 24.2 0.36 11.6 0.3 8.6 8 0 0 8 8 5 2 Bacterial Ig domain DUF2393 PF09624.10 gi|240103806|ref|YP_002960115.1| - 0.011 15.7 0.1 0.35 10.9 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2393) fn3 PF00041.21 gi|240103806|ref|YP_002960115.1| - 0.022 15.1 0.6 0.27 11.6 0.0 3.4 2 0 0 2 2 2 0 Fibronectin type III domain fn3_3 PF14686.6 gi|240103806|ref|YP_002960115.1| - 0.057 13.2 0.7 0.68 9.8 0.1 3.2 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II NPCBM_assoc PF10633.9 gi|240103806|ref|YP_002960115.1| - 0.1 12.9 16.4 0.76 10.1 0.0 8.2 10 0 0 10 10 6 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4232 PF14016.6 gi|240103806|ref|YP_002960115.1| - 0.15 12.2 1.7 31 4.7 0.0 5.1 4 0 0 4 4 4 0 Protein of unknown function (DUF4232) SdrD_B PF17210.3 gi|240103806|ref|YP_002960115.1| - 0.16 12.2 0.8 0.83 9.9 0.8 2.3 1 0 0 1 1 1 0 SdrD B-like domain Y_Y_Y PF07495.13 gi|240103806|ref|YP_002960115.1| - 0.31 11.0 3.1 3.7 7.6 0.0 4.2 5 0 0 5 5 3 0 Y_Y_Y domain PEGA PF08308.11 gi|240103806|ref|YP_002960115.1| - 0.85 9.6 3.4 13 5.8 0.1 4.9 4 0 0 4 4 4 0 PEGA domain VIT1 PF01988.19 gi|240103807|ref|YP_002960116.1| - 7.3e-47 160.0 7.0 9.9e-47 159.6 7.0 1.2 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.17 gi|240103807|ref|YP_002960116.1| - 7.1e-05 23.2 4.1 0.00029 21.3 3.7 2.1 1 1 1 2 2 2 1 Rubrerythrin AurF PF11583.8 gi|240103807|ref|YP_002960116.1| - 0.16 11.2 1.8 5.9 6.1 0.2 2.3 1 1 1 2 2 2 0 P-aminobenzoate N-oxygenase AurF DUF1269 PF06897.12 gi|240103807|ref|YP_002960116.1| - 4.8 7.5 6.5 6.8 7.1 0.0 3.4 2 1 2 4 4 4 0 Protein of unknown function (DUF1269) Phage_holin_3_6 PF07332.11 gi|240103807|ref|YP_002960116.1| - 5.1 7.2 10.4 9.1 6.4 0.1 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III RuBisCO_large PF00016.20 gi|240103808|ref|YP_002960117.1| - 1e-95 320.4 0.0 1.3e-95 320.1 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|240103808|ref|YP_002960117.1| - 9.2e-45 151.7 0.0 2.7e-44 150.2 0.0 1.8 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain LigA PF07746.11 gi|240103808|ref|YP_002960117.1| - 0.072 13.3 0.1 1.6 8.9 0.1 2.3 2 0 0 2 2 2 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit 4HFCP_synth PF04476.13 gi|240103808|ref|YP_002960117.1| - 0.16 11.7 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 4-HFC-P synthase Alpha-amylase PF00128.24 gi|240103809|ref|YP_002960118.1| - 3.9e-61 207.5 0.0 6e-61 206.9 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain AMPK1_CBM PF16561.5 gi|240103809|ref|YP_002960118.1| - 9e-12 45.1 0.3 3.8e-11 43.0 0.2 2.1 2 0 0 2 2 2 1 Glycogen recognition site of AMP-activated protein kinase Alpha-amylase_C PF02806.18 gi|240103809|ref|YP_002960118.1| - 0.0006 20.2 0.0 0.0032 17.9 0.0 2.4 1 1 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain Mucin PF01456.17 gi|240103809|ref|YP_002960118.1| - 0.013 15.5 20.0 0.021 14.8 20.0 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein Malt_amylase_C PF16657.5 gi|240103809|ref|YP_002960118.1| - 0.014 15.5 0.0 0.037 14.1 0.0 1.6 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 gi|240103809|ref|YP_002960118.1| - 0.061 13.7 0.0 0.16 12.3 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) Glyco_hydro_70 PF02324.16 gi|240103809|ref|YP_002960118.1| - 0.099 10.8 0.2 0.19 9.9 0.0 1.5 2 0 0 2 2 2 0 Glycosyl hydrolase family 70 CBM_48 PF02922.18 gi|240103809|ref|YP_002960118.1| - 0.33 11.3 3.7 0.27 11.6 0.2 2.7 4 0 0 4 4 4 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SSP160 PF06933.11 gi|240103809|ref|YP_002960118.1| - 5.7 5.0 19.2 9.3 4.3 19.2 1.3 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 PYC_OADA PF02436.18 gi|240103810|ref|YP_002960119.1| - 2.2e-56 190.8 0.0 6.9e-56 189.1 0.0 1.7 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|240103810|ref|YP_002960119.1| - 3.5e-40 138.2 0.0 4.7e-40 137.8 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|240103810|ref|YP_002960119.1| - 5.5e-25 87.0 1.6 1.2e-24 86.0 1.6 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|240103810|ref|YP_002960119.1| - 9.2e-17 60.6 0.3 7.5e-08 32.1 0.0 2.8 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|240103810|ref|YP_002960119.1| - 3.6e-06 27.6 0.1 0.034 14.9 0.0 2.8 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|240103810|ref|YP_002960119.1| - 0.00011 21.5 0.1 0.22 10.7 0.0 2.4 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 gi|240103810|ref|YP_002960119.1| - 0.0012 18.5 0.3 0.39 10.5 0.0 2.8 2 1 1 3 3 3 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 gi|240103810|ref|YP_002960119.1| - 0.024 14.6 0.5 0.14 12.1 0.1 2.5 2 1 0 2 2 2 0 RnfC Barrel sandwich hybrid domain YqfD PF06898.11 gi|240103810|ref|YP_002960119.1| - 0.043 12.7 2.6 0.8 8.5 0.1 2.9 2 1 1 3 3 3 0 Putative stage IV sporulation protein YqfD GCV_H PF01597.19 gi|240103810|ref|YP_002960119.1| - 0.049 13.5 0.7 0.11 12.3 0.2 1.9 2 0 0 2 2 2 0 Glycine cleavage H-protein NQRA PF05896.11 gi|240103810|ref|YP_002960119.1| - 0.13 11.7 0.3 0.7 9.3 0.3 2.0 1 1 1 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DEC-1_N PF04625.13 gi|240103810|ref|YP_002960119.1| - 0.25 10.3 5.8 0.39 9.7 5.8 1.2 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region DeoC PF01791.9 gi|313511199|ref|YP_002960120.2| - 2.9e-36 125.3 0.0 3.4e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase BPL_LplA_LipB PF03099.19 gi|240103812|ref|YP_002960121.1| - 3.6e-17 62.5 0.0 5.1e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|240103812|ref|YP_002960121.1| - 4.4e-12 45.7 1.1 9.7e-12 44.6 1.1 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain SDF PF00375.18 gi|240103813|ref|YP_002960122.1| - 7.5e-125 417.0 39.5 8.5e-125 416.8 39.5 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Spore_GerAC PF05504.11 gi|240103814|ref|YP_002960123.1| - 0.09 13.0 1.6 0.33 11.2 0.1 2.6 3 1 0 3 3 3 0 Spore germination B3/ GerAC like, C-terminal SMC_ScpB PF04079.16 gi|240103816|ref|YP_002960125.1| - 6.4e-36 123.4 1.2 1.1e-35 122.6 0.5 1.6 2 0 0 2 2 2 1 Segregation and condensation complex subunit ScpB HTH_27 PF13463.6 gi|240103816|ref|YP_002960125.1| - 0.0048 17.3 0.3 0.44 11.1 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|240103816|ref|YP_002960125.1| - 0.014 15.3 0.8 0.088 12.7 0.1 2.4 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|240103816|ref|YP_002960125.1| - 0.018 14.9 0.1 0.87 9.5 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|240103816|ref|YP_002960125.1| - 0.023 14.2 0.1 1.6 8.3 0.1 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|240103816|ref|YP_002960125.1| - 0.079 13.0 0.0 2.9 8.0 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 gi|240103816|ref|YP_002960125.1| - 0.12 12.3 0.6 2 8.4 0.2 2.8 2 1 0 2 2 2 0 MarR family RHH_3 PF12651.7 gi|240103816|ref|YP_002960125.1| - 2.3 8.2 5.3 0.9 9.5 2.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix domain tRNA_anti-codon PF01336.25 gi|240103817|ref|YP_002960126.1| - 6.4e-16 58.1 0.6 8.5e-12 44.9 0.3 2.6 2 1 0 2 2 2 2 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.10 gi|240103817|ref|YP_002960126.1| - 3.1e-09 36.7 0.0 5.1e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Replication factor-A C terminal domain CDC24_OB3 PF17244.2 gi|240103817|ref|YP_002960126.1| - 8.5e-06 25.6 0.0 2.5e-05 24.1 0.0 1.8 1 1 0 1 1 1 1 Cell division control protein 24, OB domain 3 DUF2240 PF09999.9 gi|240103817|ref|YP_002960126.1| - 0.0012 18.5 0.2 0.0023 17.6 0.2 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF2396 PF09654.10 gi|240103817|ref|YP_002960126.1| - 0.14 12.2 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) DUF1323 PF07037.11 gi|240103817|ref|YP_002960126.1| - 0.24 11.8 0.9 20 5.6 0.0 2.7 2 0 0 2 2 2 0 Putative transcription regulator (DUF1323) BOF PF04076.13 gi|240103818|ref|YP_002960127.1| - 0.00056 19.9 0.5 0.00096 19.2 0.5 1.4 1 1 0 1 1 1 1 Bacterial OB fold (BOF) protein RMI2 PF16100.5 gi|240103818|ref|YP_002960127.1| - 0.0037 17.1 0.0 0.0043 16.9 0.0 1.2 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 Rep_fac-A_3 PF08661.11 gi|240103818|ref|YP_002960127.1| - 0.011 16.0 0.0 0.015 15.7 0.0 1.1 1 0 0 1 1 1 0 Replication factor A protein 3 tRNA_anti-codon PF01336.25 gi|240103819|ref|YP_002960128.1| - 1e-09 38.2 1.5 2.7e-09 36.9 1.5 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TBPIP PF07106.13 gi|240103819|ref|YP_002960128.1| - 6.1e-05 22.9 0.0 0.00015 21.6 0.0 1.7 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain RMI2 PF16100.5 gi|240103819|ref|YP_002960128.1| - 0.004 17.0 0.0 0.0066 16.3 0.0 1.4 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 HTH_12 PF08461.10 gi|240103819|ref|YP_002960128.1| - 0.011 15.7 0.4 0.029 14.3 0.1 1.8 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain RPA_C PF08784.11 gi|240103819|ref|YP_002960128.1| - 0.021 15.4 0.0 0.04 14.6 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal DUF4777 PF16007.5 gi|240103819|ref|YP_002960128.1| - 0.065 13.5 0.3 0.4 11.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) Stork_head PF10264.9 gi|240103819|ref|YP_002960128.1| - 0.15 12.2 0.1 0.81 9.9 0.0 2.1 1 1 1 2 2 2 0 Winged helix Storkhead-box1 domain RACo_linker PF17650.1 gi|240103820|ref|YP_002960129.1| - 0.093 12.6 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 RACo linker region UbiA PF01040.18 gi|240103821|ref|YP_002960130.1| - 1.1e-44 152.6 14.4 1.1e-44 152.6 14.4 1.2 1 1 0 1 1 1 1 UbiA prenyltransferase family Phage_TTP_13 PF16463.5 gi|240103821|ref|YP_002960130.1| - 0.07 12.7 0.1 0.21 11.1 0.0 1.7 2 0 0 2 2 2 0 Phage tail tube protein family DUF2304 PF10066.9 gi|240103821|ref|YP_002960130.1| - 0.13 12.5 0.1 0.13 12.5 0.1 3.8 4 2 1 5 5 5 0 Uncharacterized conserved protein (DUF2304) CLP1_P PF16575.5 gi|240103822|ref|YP_002960131.1| - 6.4e-37 127.2 0.0 8.6e-37 126.8 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|240103822|ref|YP_002960131.1| - 0.0042 16.7 0.1 0.24 11.0 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MobB PF03205.14 gi|240103822|ref|YP_002960131.1| - 0.0052 16.7 0.0 0.025 14.5 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.29 gi|240103822|ref|YP_002960131.1| - 0.085 13.3 0.0 0.51 10.8 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MipZ PF09140.11 gi|240103822|ref|YP_002960131.1| - 0.094 12.0 0.0 0.33 10.2 0.0 1.9 1 1 0 1 1 1 0 ATPase MipZ CbiA PF01656.23 gi|240103822|ref|YP_002960131.1| - 0.096 12.8 0.0 0.16 12.0 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AsnC_trans_reg PF01037.21 gi|240103823|ref|YP_002960132.1| - 1.6e-08 34.4 0.6 2.8e-08 33.6 0.6 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR_2 PF12802.7 gi|240103823|ref|YP_002960132.1| - 1.8e-08 34.2 0.1 3.4e-08 33.3 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|240103823|ref|YP_002960132.1| - 6.7e-08 32.3 0.4 1.8e-06 27.7 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|240103823|ref|YP_002960132.1| - 3e-07 30.3 0.3 3e-07 30.3 0.3 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|240103823|ref|YP_002960132.1| - 5.9e-07 29.0 0.7 1.1e-06 28.0 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|240103823|ref|YP_002960132.1| - 8.8e-07 28.8 1.0 6.4e-06 26.0 0.6 2.5 2 1 0 2 2 1 1 HTH domain HTH_20 PF12840.7 gi|240103823|ref|YP_002960132.1| - 1.3e-06 28.3 0.4 4.3e-06 26.7 0.2 2.1 2 1 0 2 2 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|240103823|ref|YP_002960132.1| - 2.7e-05 23.9 1.2 0.0026 17.5 0.1 2.7 3 0 0 3 3 2 1 HTH DNA binding domain MarR PF01047.22 gi|240103823|ref|YP_002960132.1| - 3.7e-05 23.6 0.2 9.8e-05 22.2 0.2 1.7 1 1 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|240103823|ref|YP_002960132.1| - 0.0011 19.1 0.1 0.14 12.3 0.0 2.7 2 1 1 3 3 2 1 Helix-turn-helix domain ssDNA-exonuc_C PF10141.9 gi|240103823|ref|YP_002960132.1| - 0.0014 18.3 0.0 0.0059 16.3 0.0 1.8 2 0 0 2 2 2 1 Single-strand DNA-specific exonuclease, C terminal domain HTH_34 PF13601.6 gi|240103823|ref|YP_002960132.1| - 0.0017 18.5 0.0 0.0038 17.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_3 PF01381.22 gi|240103823|ref|YP_002960132.1| - 0.0021 18.1 0.2 0.0076 16.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_Mga PF08280.11 gi|240103823|ref|YP_002960132.1| - 0.0027 17.7 0.5 0.013 15.5 0.5 2.0 1 1 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_36 PF13730.6 gi|240103823|ref|YP_002960132.1| - 0.0027 17.6 0.1 0.0076 16.2 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|240103823|ref|YP_002960132.1| - 0.0033 17.2 1.1 0.0076 16.0 0.5 2.0 2 1 0 2 2 2 1 LexA DNA binding domain Sigma70_r4 PF04545.16 gi|240103823|ref|YP_002960132.1| - 0.0034 16.9 0.4 0.04 13.4 0.4 2.5 1 1 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|240103823|ref|YP_002960132.1| - 0.0034 17.2 0.9 0.068 13.1 0.0 2.9 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|240103823|ref|YP_002960132.1| - 0.0055 17.0 0.2 0.015 15.6 0.1 1.8 2 0 0 2 2 1 1 Transcriptional regulator Homeodomain PF00046.29 gi|240103823|ref|YP_002960132.1| - 0.0095 15.8 0.5 0.032 14.1 0.3 2.0 2 0 0 2 2 2 1 Homeodomain RepL PF05732.11 gi|240103823|ref|YP_002960132.1| - 0.032 13.7 0.1 0.12 11.8 0.0 1.8 1 1 1 2 2 2 0 Firmicute plasmid replication protein (RepL) HTH_IclR PF09339.10 gi|240103823|ref|YP_002960132.1| - 0.041 13.7 0.2 0.12 12.2 0.1 1.8 2 0 0 2 2 1 0 IclR helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|240103823|ref|YP_002960132.1| - 0.046 13.9 0.1 0.2 11.8 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix of insertion element transposase YdaS_antitoxin PF15943.5 gi|240103823|ref|YP_002960132.1| - 0.05 13.5 0.0 0.097 12.5 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_1 PF00126.27 gi|240103823|ref|YP_002960132.1| - 0.057 13.4 0.2 1.1 9.3 0.1 2.7 2 1 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_8 PF02954.19 gi|240103823|ref|YP_002960132.1| - 0.061 13.1 0.0 0.19 11.5 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_27 PF13463.6 gi|240103823|ref|YP_002960132.1| - 0.062 13.8 0.6 0.12 12.9 0.1 1.9 2 1 0 2 2 1 0 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|240103823|ref|YP_002960132.1| - 0.082 12.9 1.3 0.23 11.5 0.8 2.0 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain B-block_TFIIIC PF04182.12 gi|240103823|ref|YP_002960132.1| - 0.15 12.2 0.8 0.33 11.2 0.0 2.1 3 0 0 3 3 1 0 B-block binding subunit of TFIIIC Radical_SAM PF04055.21 gi|240103823|ref|YP_002960132.1| - 0.25 11.7 1.1 0.59 10.5 0.7 1.9 1 1 1 2 2 2 0 Radical SAM superfamily Mrr_N PF14338.6 gi|240103823|ref|YP_002960132.1| - 0.37 10.9 2.5 18 5.5 0.0 2.9 2 1 1 3 3 3 0 Mrr N-terminal domain MMR_HSR1 PF01926.23 gi|240103824|ref|YP_002960133.1| - 2e-19 69.7 0.0 2.8e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|240103824|ref|YP_002960133.1| - 1.1e-13 51.0 0.0 1.1e-12 47.8 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|240103824|ref|YP_002960133.1| - 2.9e-09 36.8 0.0 3.4e-07 30.0 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|240103824|ref|YP_002960133.1| - 2e-06 27.8 0.5 0.01 15.8 0.1 2.7 2 1 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|240103824|ref|YP_002960133.1| - 0.00031 20.7 0.2 0.00065 19.7 0.0 1.6 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|240103824|ref|YP_002960133.1| - 0.00053 19.6 0.1 0.12 12.0 0.0 2.2 2 0 0 2 2 2 2 Ras family AIG1 PF04548.16 gi|240103824|ref|YP_002960133.1| - 0.00088 18.7 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|240103824|ref|YP_002960133.1| - 0.00091 19.3 0.0 0.0012 19.0 0.0 1.5 1 1 0 1 1 1 1 Dynamin family Roc PF08477.13 gi|240103824|ref|YP_002960133.1| - 0.0029 17.8 0.2 0.017 15.3 0.0 2.2 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase MeaB PF03308.16 gi|240103824|ref|YP_002960133.1| - 0.0045 16.0 0.6 1.7 7.6 0.2 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB PduV-EutP PF10662.9 gi|240103824|ref|YP_002960133.1| - 0.0067 16.2 0.0 0.14 11.9 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|240103824|ref|YP_002960133.1| - 0.03 13.8 0.0 0.056 12.9 0.0 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit MobB PF03205.14 gi|240103824|ref|YP_002960133.1| - 0.033 14.1 0.1 0.055 13.4 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|240103824|ref|YP_002960133.1| - 0.043 14.1 0.0 0.2 11.9 0.0 2.0 1 1 1 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|240103824|ref|YP_002960133.1| - 0.07 12.9 0.4 0.81 9.4 0.0 2.4 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Arf PF00025.21 gi|240103824|ref|YP_002960133.1| - 0.095 12.1 0.0 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 ADP-ribosylation factor family UPF0242 PF06785.11 gi|240103825|ref|YP_002960134.1| - 1.7e-05 25.0 4.7 2.2e-05 24.6 4.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus DUF4795 PF16043.5 gi|240103825|ref|YP_002960134.1| - 0.00052 19.7 6.1 0.00084 19.0 6.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) GAS PF13851.6 gi|240103825|ref|YP_002960134.1| - 0.0014 18.0 14.0 0.0017 17.8 14.0 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Prominin PF05478.11 gi|240103825|ref|YP_002960134.1| - 0.0029 15.6 2.0 0.004 15.2 2.0 1.1 1 0 0 1 1 1 1 Prominin TMF_TATA_bd PF12325.8 gi|240103825|ref|YP_002960134.1| - 0.004 17.4 18.3 0.064 13.5 18.3 2.1 1 1 0 1 1 1 1 TATA element modulatory factor 1 TATA binding CALCOCO1 PF07888.11 gi|240103825|ref|YP_002960134.1| - 0.0052 15.7 8.7 0.0066 15.4 8.7 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like Spc7 PF08317.11 gi|240103825|ref|YP_002960134.1| - 0.0067 15.4 12.7 0.0089 14.9 12.7 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein PRC PF05239.16 gi|240103825|ref|YP_002960134.1| - 0.007 16.4 3.0 0.038 14.1 3.5 2.0 2 1 0 2 2 1 1 PRC-barrel domain Rootletin PF15035.6 gi|240103825|ref|YP_002960134.1| - 0.01 15.9 10.6 0.013 15.5 9.3 1.7 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion CENP-H PF05837.12 gi|240103825|ref|YP_002960134.1| - 0.011 16.1 7.0 0.017 15.5 7.0 1.3 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Exonuc_VII_L PF02601.15 gi|240103825|ref|YP_002960134.1| - 0.018 14.6 0.4 0.02 14.4 0.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Taxilin PF09728.9 gi|240103825|ref|YP_002960134.1| - 0.021 14.0 10.1 0.031 13.5 10.1 1.3 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Phage_GP20 PF06810.11 gi|240103825|ref|YP_002960134.1| - 0.021 14.6 8.7 0.33 10.8 2.0 2.2 1 1 1 2 2 2 0 Phage minor structural protein GP20 CENP-F_leu_zip PF10473.9 gi|240103825|ref|YP_002960134.1| - 0.059 13.4 15.7 0.11 12.5 15.3 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 KRAB PF01352.27 gi|240103825|ref|YP_002960134.1| - 0.069 12.8 0.3 0.16 11.6 0.1 1.7 2 0 0 2 2 1 0 KRAB box KASH_CCD PF14662.6 gi|240103825|ref|YP_002960134.1| - 0.074 12.9 14.6 0.13 12.1 14.6 1.4 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH TMPIT PF07851.13 gi|240103825|ref|YP_002960134.1| - 0.089 12.0 3.6 0.12 11.6 3.6 1.2 1 0 0 1 1 1 0 TMPIT-like protein Sec20 PF03908.13 gi|240103825|ref|YP_002960134.1| - 0.12 12.3 2.8 0.76 9.7 1.0 2.2 1 1 1 2 2 2 0 Sec20 Atg14 PF10186.9 gi|240103825|ref|YP_002960134.1| - 0.22 10.6 7.0 0.3 10.1 7.0 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DNA_topoisoIV PF00521.20 gi|240103825|ref|YP_002960134.1| - 0.29 10.0 4.5 0.44 9.4 4.5 1.2 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A V_ATPase_I PF01496.19 gi|240103825|ref|YP_002960134.1| - 0.3 8.9 3.6 0.53 8.1 3.6 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF3450 PF11932.8 gi|240103825|ref|YP_002960134.1| - 0.32 10.3 9.9 0.23 10.7 8.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Med9 PF07544.13 gi|240103825|ref|YP_002960134.1| - 0.39 10.8 0.2 0.39 10.8 0.2 3.1 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF4559 PF15112.6 gi|240103825|ref|YP_002960134.1| - 0.41 10.3 5.2 0.57 9.8 5.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) FUSC PF04632.12 gi|240103825|ref|YP_002960134.1| - 0.42 9.1 2.2 0.57 8.7 2.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF2508 PF10704.9 gi|240103825|ref|YP_002960134.1| - 0.53 10.5 7.6 1.5 9.1 4.9 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2508) Sas6_CC PF18594.1 gi|240103825|ref|YP_002960134.1| - 0.64 9.8 5.2 0.13 12.0 1.1 2.0 2 0 0 2 2 1 0 Sas6/XLF/XRCC4 coiled-coil domain TMF_DNA_bd PF12329.8 gi|240103825|ref|YP_002960134.1| - 0.79 9.8 13.2 0.51 10.4 10.9 1.8 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DLP_helical PF18709.1 gi|240103825|ref|YP_002960134.1| - 0.87 8.7 6.3 1.3 8.2 5.8 1.4 1 1 0 1 1 1 0 Dynamin-like helical domain COG2 PF06148.11 gi|240103825|ref|YP_002960134.1| - 0.92 9.6 7.7 0.45 10.6 4.3 1.9 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF745 PF05335.13 gi|240103825|ref|YP_002960134.1| - 1.1 9.0 5.6 1 9.0 4.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF745) FTA4 PF13093.6 gi|240103825|ref|YP_002960134.1| - 1.5 8.7 11.3 8.4 6.2 11.3 1.8 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 HisKA PF00512.25 gi|240103825|ref|YP_002960134.1| - 1.6 8.8 5.4 3.2 7.8 1.3 2.8 2 1 1 3 3 3 0 His Kinase A (phospho-acceptor) domain DUF1479 PF07350.12 gi|240103825|ref|YP_002960134.1| - 1.6 7.4 4.6 1.6 7.4 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1479) GIT_CC PF16559.5 gi|240103825|ref|YP_002960134.1| - 1.6 8.6 8.6 0.93 9.4 3.5 2.3 1 1 1 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor RasGAP_C PF03836.15 gi|240103825|ref|YP_002960134.1| - 1.9 8.7 10.0 0.87 9.7 4.6 2.2 1 1 1 2 2 2 0 RasGAP C-terminus Rho_Binding PF08912.11 gi|240103825|ref|YP_002960134.1| - 2.1 9.2 12.3 11 6.9 5.1 2.7 1 1 2 3 3 3 0 Rho Binding PCRF PF03462.18 gi|240103825|ref|YP_002960134.1| - 2.1 8.1 8.7 1.3 8.9 6.5 1.8 2 0 0 2 2 2 0 PCRF domain Seryl_tRNA_N PF02403.22 gi|240103825|ref|YP_002960134.1| - 2.2 8.6 9.8 1.9 8.8 8.1 1.6 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF2203 PF09969.9 gi|240103825|ref|YP_002960134.1| - 2.3 9.0 6.7 3.6 8.3 3.1 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) APG6_N PF17675.1 gi|240103825|ref|YP_002960134.1| - 3.5 8.1 18.0 5.6 7.5 16.8 1.7 1 1 1 2 2 2 0 Apg6 coiled-coil region DUF724 PF05266.14 gi|240103825|ref|YP_002960134.1| - 5.6 6.7 10.2 9.5 6.0 10.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF724) ZapB PF06005.12 gi|240103825|ref|YP_002960134.1| - 6.1 7.4 19.8 1.4 9.4 9.9 2.3 1 1 1 2 2 2 0 Cell division protein ZapB Sec2p PF06428.11 gi|240103825|ref|YP_002960134.1| - 6.6 6.8 14.5 2.7 8.0 5.9 2.4 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p Ly49 PF08391.10 gi|240103825|ref|YP_002960134.1| - 7.6 6.9 6.3 7 7.0 2.0 2.1 1 1 1 2 2 2 0 Ly49-like protein, N-terminal region Thymidylate_kin PF02223.17 gi|240103826|ref|YP_002960135.1| - 9.9e-55 185.1 0.0 1.2e-54 184.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|240103826|ref|YP_002960135.1| - 6.1e-07 29.8 0.0 1.1e-06 28.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|240103826|ref|YP_002960135.1| - 1.9e-05 24.7 0.5 0.24 11.2 0.0 2.6 2 1 0 2 2 2 2 Deoxynucleoside kinase AAA_33 PF13671.6 gi|240103826|ref|YP_002960135.1| - 7.8e-05 22.9 0.0 0.00012 22.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain Ploopntkinase1 PF18748.1 gi|240103826|ref|YP_002960135.1| - 0.00086 18.9 0.1 0.0046 16.5 0.0 1.9 2 0 0 2 2 2 1 P-loop Nucleotide Kinase1 AAA_18 PF13238.6 gi|240103826|ref|YP_002960135.1| - 0.0009 19.8 0.1 0.0035 17.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|240103826|ref|YP_002960135.1| - 0.0012 19.3 0.0 0.0027 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|240103826|ref|YP_002960135.1| - 0.0051 17.1 0.0 0.014 15.7 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|240103826|ref|YP_002960135.1| - 0.0065 16.2 0.1 0.01 15.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|240103826|ref|YP_002960135.1| - 0.0093 15.4 0.0 0.041 13.3 0.0 1.9 2 0 0 2 2 2 1 Chromatin associated protein KTI12 SRP54 PF00448.22 gi|240103826|ref|YP_002960135.1| - 0.012 15.2 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|240103826|ref|YP_002960135.1| - 0.027 14.4 0.1 0.21 11.5 0.1 2.2 1 1 1 2 2 2 0 Adenylylsulphate kinase CbiA PF01656.23 gi|240103826|ref|YP_002960135.1| - 0.038 14.1 0.0 0.045 13.8 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PPK2 PF03976.14 gi|240103826|ref|YP_002960135.1| - 0.068 12.7 0.0 0.17 11.3 0.0 1.7 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) SKI PF01202.22 gi|240103826|ref|YP_002960135.1| - 0.097 12.8 0.4 17 5.5 0.1 2.2 2 0 0 2 2 2 0 Shikimate kinase ADK PF00406.22 gi|240103826|ref|YP_002960135.1| - 0.1 12.7 0.6 3 7.9 0.6 2.4 1 1 0 1 1 1 0 Adenylate kinase ABC_tran PF00005.27 gi|240103826|ref|YP_002960135.1| - 0.11 13.1 0.2 0.23 12.0 0.0 1.7 2 0 0 2 2 2 0 ABC transporter PGM_PMM_I PF02878.16 gi|240103827|ref|YP_002960136.1| - 2.1e-05 24.2 0.0 5.7e-05 22.8 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|240103827|ref|YP_002960136.1| - 0.0078 16.8 0.0 0.018 15.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PEPCK_GTP PF00821.18 gi|240103828|ref|YP_002960137.1| - 3e-109 365.2 0.0 3.9e-109 364.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|240103828|ref|YP_002960137.1| - 1.8e-59 201.0 0.0 2.5e-59 200.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain Phosphorylase PF00343.20 gi|240103829|ref|YP_002960138.1| - 3.7e-37 128.0 0.0 3.2e-20 72.0 0.0 4.1 2 1 2 4 4 4 4 Carbohydrate phosphorylase DUF3417 PF11897.8 gi|240103829|ref|YP_002960138.1| - 6e-30 103.9 1.1 6e-30 103.9 1.1 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF3417) Glyco_hydro_71 PF03659.14 gi|240103829|ref|YP_002960138.1| - 0.23 10.2 2.3 0.46 9.2 2.3 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 71 DUF2070 PF09843.9 gi|240103830|ref|YP_002960139.1| - 0.89 7.8 15.0 1.2 7.4 15.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC2_membrane PF01061.24 gi|240103831|ref|YP_002960140.1| - 0.17 11.3 15.2 0.021 14.2 3.4 2.9 1 1 0 2 2 2 0 ABC-2 type transporter Rnf-Nqr PF02508.14 gi|240103831|ref|YP_002960140.1| - 9.2 6.2 14.9 0.36 10.8 1.4 3.1 2 1 0 3 3 3 0 Rnf-Nqr subunit, membrane protein tRNA-synt_1c PF00749.21 gi|240103832|ref|YP_002960141.1| - 7e-85 284.7 0.0 9.9e-85 284.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|240103832|ref|YP_002960141.1| - 2e-30 106.0 0.0 4.5e-30 104.8 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Toprim_4 PF13662.6 gi|240103833|ref|YP_002960142.1| - 3.2e-14 53.2 0.9 1.3e-13 51.2 0.4 2.4 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|240103833|ref|YP_002960142.1| - 1.3e-06 28.7 0.0 4.2e-06 27.1 0.0 1.9 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|240103833|ref|YP_002960142.1| - 0.00084 19.5 0.3 0.00084 19.5 0.3 2.7 2 2 1 3 3 3 1 Toprim domain Toprim PF01751.22 gi|240103834|ref|YP_002960143.1| - 5.3e-07 29.8 0.1 1.3e-06 28.6 0.1 1.8 1 1 1 2 2 2 1 Toprim domain Toprim_4 PF13662.6 gi|240103834|ref|YP_002960143.1| - 0.00048 20.5 0.0 0.001 19.5 0.0 1.6 1 1 0 1 1 1 1 Toprim domain Toprim_3 PF13362.6 gi|240103834|ref|YP_002960143.1| - 0.0048 17.2 0.0 0.0066 16.8 0.0 1.2 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|240103834|ref|YP_002960143.1| - 0.013 15.9 0.0 0.018 15.4 0.0 1.3 1 0 0 1 1 1 0 Toprim-like MtrF PF09472.10 gi|240103835|ref|YP_002960144.1| - 1.3 8.5 6.4 1 8.8 2.7 2.4 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Radical_SAM PF04055.21 gi|240103836|ref|YP_002960145.1| - 1.4e-25 90.6 0.0 2.6e-25 89.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|240103836|ref|YP_002960145.1| - 2.7e-09 37.1 0.0 5.4e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain CBFD_NFYB_HMF PF00808.23 gi|240103837|ref|YP_002960146.1| - 6.7e-21 74.4 0.9 7.3e-21 74.2 0.9 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|240103837|ref|YP_002960146.1| - 9.2e-12 45.5 0.5 1e-11 45.3 0.5 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|240103837|ref|YP_002960146.1| - 1.2e-07 31.8 0.1 1.2e-07 31.8 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TAF PF02969.17 gi|240103837|ref|YP_002960146.1| - 3.3e-07 30.4 0.3 3.4e-07 30.3 0.3 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|240103837|ref|YP_002960146.1| - 4.2e-07 30.2 0.0 4.4e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|240103837|ref|YP_002960146.1| - 7.9e-07 29.2 0.0 8.9e-07 29.0 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit Bromo_TP PF07524.13 gi|240103837|ref|YP_002960146.1| - 1.8e-06 27.9 0.0 2e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID-18kDa PF02269.16 gi|240103837|ref|YP_002960146.1| - 1.1e-05 25.3 0.0 1.2e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit TFIID_20kDa PF03847.13 gi|240103837|ref|YP_002960146.1| - 0.0011 19.5 0.0 0.0012 19.3 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A DUF1931 PF09123.11 gi|240103837|ref|YP_002960146.1| - 0.0099 16.0 0.6 0.012 15.8 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CENP-X PF09415.10 gi|240103837|ref|YP_002960146.1| - 0.015 15.6 1.4 0.018 15.4 1.4 1.1 1 0 0 1 1 1 0 CENP-S associating Centromere protein X Bromo_TP_like PF17027.5 gi|240103837|ref|YP_002960146.1| - 0.081 13.1 0.0 0.083 13.0 0.0 1.1 1 0 0 1 1 1 0 Histone-fold protein PCP_red PF08369.10 gi|240103837|ref|YP_002960146.1| - 0.11 12.7 2.7 0.63 10.3 0.1 2.4 2 2 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Rib_5-P_isom_A PF06026.14 gi|240103838|ref|YP_002960147.1| - 4.6e-66 221.7 0.1 5.6e-66 221.4 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|240103838|ref|YP_002960147.1| - 7.7e-08 32.4 0.0 3.7e-05 23.7 0.0 2.2 1 1 1 2 2 2 2 DeoR C terminal sensor domain CbiA PF01656.23 gi|240103840|ref|YP_002960149.1| - 3.8e-25 88.4 0.3 5.8e-25 87.8 0.3 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|240103840|ref|YP_002960149.1| - 6.4e-24 84.8 0.2 9.8e-24 84.2 0.2 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|240103840|ref|YP_002960149.1| - 1.7e-19 70.2 4.2 7.1e-19 68.2 4.2 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|240103840|ref|YP_002960149.1| - 2.8e-13 50.0 0.4 6.2e-08 32.4 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|240103840|ref|YP_002960149.1| - 1e-11 44.8 0.0 2.3e-11 43.6 0.0 1.6 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|240103840|ref|YP_002960149.1| - 1.2e-09 37.8 0.6 1e-08 34.8 0.6 2.1 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|240103840|ref|YP_002960149.1| - 2.1e-07 30.5 1.1 3.3e-07 29.8 0.1 1.8 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|240103840|ref|YP_002960149.1| - 2.2e-05 24.4 1.7 2.2e-05 24.4 1.7 2.3 2 1 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|240103840|ref|YP_002960149.1| - 0.00026 20.4 0.2 0.00058 19.2 0.2 1.5 1 0 0 1 1 1 1 VirC1 protein SRP54 PF00448.22 gi|240103840|ref|YP_002960149.1| - 0.00094 18.9 0.7 0.0033 17.1 0.4 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|240103840|ref|YP_002960149.1| - 0.011 15.5 0.9 0.018 14.8 0.6 1.4 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|240103840|ref|YP_002960149.1| - 0.037 13.6 0.8 0.14 11.8 0.8 2.1 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|240103840|ref|YP_002960149.1| - 0.04 13.8 0.1 0.085 12.7 0.1 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase PhoH PF02562.16 gi|240103840|ref|YP_002960149.1| - 0.074 12.5 0.2 0.15 11.5 0.2 1.5 1 0 0 1 1 1 0 PhoH-like protein CLP1_P PF16575.5 gi|240103840|ref|YP_002960149.1| - 0.1 12.4 0.1 0.23 11.2 0.1 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_6 PF12774.7 gi|240103840|ref|YP_002960149.1| - 0.18 10.8 0.1 0.32 9.9 0.1 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_24 PF13479.6 gi|240103840|ref|YP_002960149.1| - 0.18 11.5 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.7 gi|240103841|ref|YP_002960150.1| - 0.067 12.3 0.0 0.067 12.3 0.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Med9 PF07544.13 gi|240103841|ref|YP_002960150.1| - 0.07 13.2 0.2 0.083 13.0 0.2 1.1 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF3854 PF12965.7 gi|240103841|ref|YP_002960150.1| - 0.12 12.3 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3854) Glycos_transf_3 PF00591.21 gi|240103843|ref|YP_002960152.1| - 4.1e-16 59.3 1.0 2.1e-15 57.0 1.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|240103843|ref|YP_002960152.1| - 2.5e-15 56.1 1.6 9.6e-15 54.2 0.5 2.4 2 1 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.13 gi|240103843|ref|YP_002960152.1| - 2.5e-15 55.9 0.0 7.6e-15 54.3 0.0 1.9 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain DUF2254 PF10011.9 gi|240103843|ref|YP_002960152.1| - 1.3e-05 24.3 0.0 1.9e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Biotin_lipoyl PF00364.22 gi|240103843|ref|YP_002960152.1| - 0.0045 16.8 0.0 0.026 14.4 0.0 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|240103843|ref|YP_002960152.1| - 0.0048 16.7 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 Biotin-lipoyl like Molydop_binding PF01568.21 gi|240103843|ref|YP_002960152.1| - 0.0079 16.2 0.0 0.021 14.9 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|240103843|ref|YP_002960152.1| - 0.054 13.7 0.0 0.34 11.1 0.0 2.4 1 1 1 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain LexA_DNA_bind PF01726.16 gi|240103844|ref|YP_002960153.1| - 0.013 15.2 0.0 0.044 13.6 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain CH_2 PF06294.11 gi|240103844|ref|YP_002960153.1| - 0.12 12.5 0.0 70 3.6 0.0 3.6 2 1 2 4 4 4 0 CH-like domain in sperm protein GCP_C_terminal PF04130.13 gi|240103844|ref|YP_002960153.1| - 0.16 11.4 0.0 0.52 9.7 0.0 1.5 1 1 0 1 1 1 0 Gamma tubulin complex component C-terminal DUF150_C PF17384.2 gi|240103845|ref|YP_002960154.1| - 0.03 14.5 0.1 0.042 14.0 0.1 1.3 1 1 0 1 1 1 0 RimP C-terminal SH3 domain MobB PF03205.14 gi|240103846|ref|YP_002960155.1| - 1.6e-17 63.6 0.2 3.1e-17 62.7 0.2 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.13 gi|240103846|ref|YP_002960155.1| - 4.5e-09 35.8 0.2 8e-09 35.0 0.2 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster CbiA PF01656.23 gi|240103846|ref|YP_002960155.1| - 0.0017 18.4 0.0 0.0023 18.0 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 gi|240103846|ref|YP_002960155.1| - 0.0044 16.7 0.0 0.008 15.8 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Sulfatase PF00884.23 gi|240103846|ref|YP_002960155.1| - 0.0086 15.5 0.0 0.012 15.0 0.0 1.1 1 0 0 1 1 1 1 Sulfatase MeaB PF03308.16 gi|240103846|ref|YP_002960155.1| - 0.014 14.4 0.1 0.03 13.3 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Thymidylate_kin PF02223.17 gi|240103846|ref|YP_002960155.1| - 0.04 13.6 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_26 PF13500.6 gi|240103846|ref|YP_002960155.1| - 0.052 13.4 0.0 0.14 12.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|240103846|ref|YP_002960155.1| - 0.055 12.9 0.0 0.1 12.0 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|240103846|ref|YP_002960155.1| - 0.057 13.3 0.0 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA PF00004.29 gi|240103846|ref|YP_002960155.1| - 0.13 12.7 0.2 0.34 11.3 0.1 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FGGY_N PF00370.21 gi|240103847|ref|YP_002960156.1| - 1.2e-87 293.5 0.0 1.7e-87 293.1 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|240103847|ref|YP_002960156.1| - 3.1e-56 190.2 0.4 2.5e-55 187.3 0.2 2.3 3 0 0 3 3 3 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|240103847|ref|YP_002960156.1| - 0.016 14.8 0.0 0.12 11.9 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family DAO PF01266.24 gi|240103848|ref|YP_002960157.1| - 8.1e-68 229.6 0.2 9.7e-68 229.3 0.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|240103848|ref|YP_002960157.1| - 1.6e-16 60.3 0.5 5e-16 58.8 0.4 2.0 2 0 0 2 2 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|240103848|ref|YP_002960157.1| - 1.7e-08 34.0 0.3 0.0053 16.0 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|240103848|ref|YP_002960157.1| - 1.1e-07 32.0 0.0 2.1e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|240103848|ref|YP_002960157.1| - 1.1e-05 25.8 5.6 0.012 16.2 0.1 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|240103848|ref|YP_002960157.1| - 0.00053 19.0 2.3 0.28 10.0 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.14 gi|240103848|ref|YP_002960157.1| - 0.00057 18.7 0.9 0.51 9.0 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_9 PF13454.6 gi|240103848|ref|YP_002960157.1| - 0.00081 19.4 1.0 0.011 15.7 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.17 gi|240103848|ref|YP_002960157.1| - 0.0012 18.2 1.0 0.0028 16.9 0.1 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|240103848|ref|YP_002960157.1| - 0.0019 17.5 1.2 0.03 13.6 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|240103848|ref|YP_002960157.1| - 0.0051 16.1 0.3 0.013 14.8 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|240103848|ref|YP_002960157.1| - 0.01 14.9 0.7 0.054 12.6 0.7 1.9 1 1 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|240103848|ref|YP_002960157.1| - 0.011 15.6 0.1 0.021 14.7 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|240103848|ref|YP_002960157.1| - 0.077 13.3 0.2 0.27 11.5 0.1 2.0 2 0 0 2 2 1 0 TrkA-N domain DUF3297 PF11730.8 gi|240103848|ref|YP_002960157.1| - 0.079 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3297) Lycopene_cycl PF05834.12 gi|240103848|ref|YP_002960157.1| - 0.11 11.5 2.4 0.11 11.5 0.1 2.2 3 0 0 3 3 3 0 Lycopene cyclase protein FMO-like PF00743.19 gi|240103848|ref|YP_002960157.1| - 0.2 10.1 0.0 0.29 9.5 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like FAD_oxidored PF12831.7 gi|240103848|ref|YP_002960157.1| - 0.2 11.0 0.1 0.87 8.9 0.1 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase FTP PF07504.13 gi|240103848|ref|YP_002960157.1| - 0.27 11.1 0.6 1 9.2 0.2 2.1 2 0 0 2 2 2 0 Fungalysin/Thermolysin Propeptide Motif GIDA PF01134.22 gi|240103848|ref|YP_002960157.1| - 1.4 7.9 3.8 5.9 5.9 0.2 2.4 3 0 0 3 3 3 0 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|240103849|ref|YP_002960158.1| - 3.1e-32 112.0 1.1 6.5e-32 110.9 1.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|240103849|ref|YP_002960158.1| - 4e-15 56.1 3.2 6.7e-05 23.4 0.5 3.7 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|240103849|ref|YP_002960158.1| - 2e-14 53.8 2.8 5.4e-13 49.1 0.1 2.6 2 1 1 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|240103849|ref|YP_002960158.1| - 4.3e-14 52.5 0.2 6.4e-07 28.9 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|240103849|ref|YP_002960158.1| - 2e-11 43.6 8.0 5e-08 32.4 0.9 3.8 3 1 1 4 4 4 2 FAD binding domain NAD_binding_8 PF13450.6 gi|240103849|ref|YP_002960158.1| - 1.2e-10 41.4 0.1 3.4e-07 30.4 0.0 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|240103849|ref|YP_002960158.1| - 1.1e-09 37.5 3.2 8.8e-08 31.3 0.3 3.2 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 gi|240103849|ref|YP_002960158.1| - 1.7e-09 37.8 9.2 0.0011 18.6 0.6 4.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|240103849|ref|YP_002960158.1| - 9.5e-08 31.5 4.6 0.00092 18.4 0.7 3.2 3 0 0 3 3 3 2 Lycopene cyclase protein GIDA PF01134.22 gi|240103849|ref|YP_002960158.1| - 7.4e-07 28.6 0.3 3.3e-06 26.5 0.0 2.2 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|240103849|ref|YP_002960158.1| - 9.3e-07 28.3 1.4 0.00091 18.5 0.1 2.4 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.19 gi|240103849|ref|YP_002960158.1| - 3.1e-06 26.7 1.9 0.0027 17.0 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.6 gi|240103849|ref|YP_002960158.1| - 5.6e-05 23.5 0.1 0.028 14.9 0.1 2.8 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|240103849|ref|YP_002960158.1| - 0.0001 21.7 2.5 0.00055 19.3 0.0 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|240103849|ref|YP_002960158.1| - 0.0038 16.6 0.7 1.5 8.1 0.1 2.3 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|240103849|ref|YP_002960158.1| - 0.025 14.2 1.6 1 8.9 0.1 2.9 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ELFV_dehydrog PF00208.21 gi|240103849|ref|YP_002960158.1| - 0.055 13.2 0.1 0.17 11.6 0.0 1.9 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 3HCDH_N PF02737.18 gi|240103849|ref|YP_002960158.1| - 0.089 12.7 1.3 4.2 7.2 0.0 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|240103849|ref|YP_002960158.1| - 0.21 11.6 0.9 0.73 9.9 0.1 2.0 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Trp_halogenase PF04820.14 gi|240103849|ref|YP_002960158.1| - 0.33 9.8 2.0 0.51 9.1 0.1 1.9 2 0 0 2 2 2 0 Tryptophan halogenase DUF1667 PF07892.11 gi|240103850|ref|YP_002960159.1| - 2.7e-26 91.4 1.0 4.3e-26 90.8 1.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1667) Molybdop_Fe4S4 PF04879.16 gi|240103850|ref|YP_002960159.1| - 0.00023 21.1 3.3 0.0006 19.8 3.3 1.7 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain LPAM_1 PF08139.12 gi|240103851|ref|YP_002960160.1| - 0.42 11.2 3.6 1.1 9.9 3.6 1.7 1 1 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Rnk_N PF14760.6 gi|240103854|ref|YP_002960163.1| - 0.0073 16.8 3.7 0.014 15.9 3.7 1.5 1 0 0 1 1 1 1 Rnk N-terminus PrsW-protease PF13367.6 gi|240103855|ref|YP_002960164.1| - 1.9e-33 115.6 15.9 2.7e-33 115.1 15.9 1.2 1 0 0 1 1 1 1 PrsW family intramembrane metalloprotease Ribosomal_L15e PF00827.17 gi|240103857|ref|YP_002960166.1| - 3.5e-90 300.9 7.7 3.9e-90 300.7 7.7 1.0 1 0 0 1 1 1 1 Ribosomal L15 CbiQ PF02361.16 gi|240103858|ref|YP_002960167.1| - 5.6e-13 49.0 3.9 7.6e-13 48.6 3.9 1.2 1 0 0 1 1 1 1 Cobalt transport protein Cas_Csa4 PF09703.10 gi|240103858|ref|YP_002960167.1| - 0.15 11.4 0.0 0.18 11.1 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa4) ABC_tran PF00005.27 gi|240103859|ref|YP_002960168.1| - 8.5e-31 107.3 0.0 1.1e-30 106.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103859|ref|YP_002960168.1| - 7.9e-08 32.5 0.0 0.0069 16.2 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240103859|ref|YP_002960168.1| - 6.1e-06 25.8 0.0 0.00093 18.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|240103859|ref|YP_002960168.1| - 0.00065 20.1 0.1 0.0014 19.1 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.6 gi|240103859|ref|YP_002960168.1| - 0.00091 18.0 0.0 0.22 10.1 0.0 2.0 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|240103859|ref|YP_002960168.1| - 0.0016 17.8 0.0 0.0023 17.3 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|240103859|ref|YP_002960168.1| - 0.0019 17.9 0.0 0.0031 17.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|240103859|ref|YP_002960168.1| - 0.0031 18.0 0.0 0.0064 16.9 0.0 1.5 1 1 1 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|240103859|ref|YP_002960168.1| - 0.0031 17.2 0.0 0.0064 16.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|240103859|ref|YP_002960168.1| - 0.0033 17.1 0.2 0.007 16.0 0.1 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|240103859|ref|YP_002960168.1| - 0.006 16.7 0.0 0.043 14.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|240103859|ref|YP_002960168.1| - 0.0083 16.4 0.0 0.054 13.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|240103859|ref|YP_002960168.1| - 0.012 15.4 0.0 0.025 14.3 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|240103859|ref|YP_002960168.1| - 0.012 15.2 0.1 0.043 13.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|240103859|ref|YP_002960168.1| - 0.014 15.4 0.1 0.02 14.8 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|240103859|ref|YP_002960168.1| - 0.016 15.8 0.6 0.045 14.3 0.2 2.1 2 1 0 2 2 1 0 AAA domain AAA_23 PF13476.6 gi|240103859|ref|YP_002960168.1| - 0.021 15.3 0.0 0.027 15.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|240103859|ref|YP_002960168.1| - 0.028 14.3 0.2 0.05 13.5 0.2 1.5 1 1 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|240103859|ref|YP_002960168.1| - 0.028 14.4 0.1 0.054 13.5 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|240103859|ref|YP_002960168.1| - 0.034 14.2 0.0 0.18 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|240103859|ref|YP_002960168.1| - 0.037 13.0 0.1 0.069 12.1 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|240103859|ref|YP_002960168.1| - 0.039 14.0 0.1 0.073 13.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DLIC PF05783.11 gi|240103859|ref|YP_002960168.1| - 0.041 12.7 0.2 0.055 12.3 0.2 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) NTPase_1 PF03266.15 gi|240103859|ref|YP_002960168.1| - 0.042 13.8 0.1 0.076 12.9 0.1 1.4 1 0 0 1 1 1 0 NTPase APS_kinase PF01583.20 gi|240103859|ref|YP_002960168.1| - 0.082 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_28 PF13521.6 gi|240103859|ref|YP_002960168.1| - 0.096 12.9 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|240103859|ref|YP_002960168.1| - 0.1 12.3 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_PrkA PF08298.11 gi|240103859|ref|YP_002960168.1| - 0.11 11.4 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain AAA_15 PF13175.6 gi|240103859|ref|YP_002960168.1| - 0.11 12.1 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.22 gi|240103859|ref|YP_002960168.1| - 0.17 11.1 0.0 0.28 10.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|240103859|ref|YP_002960168.1| - 0.23 10.7 0.0 0.33 10.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin HTH_11 PF08279.12 gi|240103860|ref|YP_002960169.1| - 9.6e-14 51.1 0.1 1.7e-13 50.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain BPL_LplA_LipB PF03099.19 gi|240103860|ref|YP_002960169.1| - 6.8e-06 26.0 0.0 1.4e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_24 PF13412.6 gi|240103860|ref|YP_002960169.1| - 8.2e-06 25.3 0.1 2.7e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|240103860|ref|YP_002960169.1| - 0.00011 22.0 0.0 0.00032 20.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|240103860|ref|YP_002960169.1| - 0.00013 22.0 0.0 0.0022 18.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|240103860|ref|YP_002960169.1| - 0.00073 19.3 0.4 0.0021 17.9 0.1 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Rrf2 PF02082.20 gi|240103860|ref|YP_002960169.1| - 0.0044 17.3 0.1 0.022 15.1 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator HTH_10 PF04967.12 gi|240103860|ref|YP_002960169.1| - 0.0064 16.3 0.0 0.02 14.7 0.0 1.8 2 0 0 2 2 1 1 HTH DNA binding domain HTH_1 PF00126.27 gi|240103860|ref|YP_002960169.1| - 0.01 15.8 0.1 0.03 14.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 gi|240103860|ref|YP_002960169.1| - 0.013 15.3 0.0 0.032 14.1 0.0 1.6 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|240103860|ref|YP_002960169.1| - 0.022 14.7 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|240103860|ref|YP_002960169.1| - 0.046 13.9 0.0 0.16 12.2 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF603 PF04645.12 gi|240103860|ref|YP_002960169.1| - 0.07 12.8 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF603 Phage_NinH PF06322.11 gi|240103860|ref|YP_002960169.1| - 0.11 12.5 0.0 8.3 6.4 0.0 2.6 2 1 0 2 2 2 0 Phage NinH protein HTH_39 PF14090.6 gi|240103860|ref|YP_002960169.1| - 0.11 12.3 0.0 0.28 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain CHGN PF05679.16 gi|240103860|ref|YP_002960169.1| - 0.13 11.0 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 Chondroitin N-acetylgalactosaminyltransferase NUMOD1 PF07453.13 gi|240103860|ref|YP_002960169.1| - 0.14 12.4 0.0 0.35 11.2 0.0 1.7 1 0 0 1 1 1 0 NUMOD1 domain BioY PF02632.14 gi|240103861|ref|YP_002960170.1| - 1.6e-37 128.6 20.1 2e-37 128.2 20.1 1.1 1 0 0 1 1 1 1 BioY family Colicin_V PF02674.16 gi|240103861|ref|YP_002960170.1| - 0.14 12.1 16.9 0.6 10.1 16.9 2.2 1 1 0 1 1 1 0 Colicin V production protein RNA_binding PF01877.17 gi|240103862|ref|YP_002960171.1| - 1.7e-37 128.3 1.8 2.3e-37 127.9 1.8 1.2 1 0 0 1 1 1 1 RNA binding Fibin PF15819.5 gi|240103862|ref|YP_002960171.1| - 0.015 15.1 0.1 0.028 14.2 0.1 1.4 1 1 0 1 1 1 0 Fin bud initiation factor homologue RNase_P_p30 PF01876.16 gi|240103863|ref|YP_002960172.1| - 2.1e-33 115.6 0.0 2.4e-33 115.4 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 AA_kinase PF00696.28 gi|240103864|ref|YP_002960173.1| - 2.3e-40 138.7 0.0 6.1e-40 137.3 0.0 1.6 2 0 0 2 2 2 1 Amino acid kinase family GHMP_kinases_C PF08544.13 gi|240103865|ref|YP_002960174.1| - 4.7e-13 49.3 0.1 9.7e-13 48.3 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|240103865|ref|YP_002960174.1| - 4.6e-12 46.0 1.2 4.6e-12 46.0 1.2 2.4 1 1 1 2 2 2 1 GHMP kinases N terminal domain PALP PF00291.25 gi|240103866|ref|YP_002960175.1| - 6.1e-83 278.6 0.3 7.1e-83 278.4 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|240103866|ref|YP_002960175.1| - 0.0003 20.9 0.1 1.5 9.0 0.0 3.2 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Semialdhyde_dhC PF02774.18 gi|240103867|ref|YP_002960176.1| - 2.7e-31 109.0 0.0 6.1e-31 107.9 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|240103867|ref|YP_002960176.1| - 3.3e-29 101.8 0.0 4.8e-29 101.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|240103867|ref|YP_002960176.1| - 0.0011 19.1 0.0 0.0019 18.3 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.21 gi|240103867|ref|YP_002960176.1| - 0.044 13.2 0.0 0.064 12.7 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family GFO_IDH_MocA PF01408.22 gi|240103867|ref|YP_002960176.1| - 0.068 14.0 0.0 0.12 13.2 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.16 gi|240103867|ref|YP_002960176.1| - 0.13 12.9 0.0 0.27 12.0 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase PALP PF00291.25 gi|240103868|ref|YP_002960177.1| - 6.4e-45 153.8 0.1 8e-45 153.5 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF2079 PF09852.9 gi|240103870|ref|YP_002960179.1| - 0.05 12.5 0.5 0.059 12.2 0.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) UDG PF03167.19 gi|240103871|ref|YP_002960180.1| - 9.6e-47 158.8 0.0 1.3e-46 158.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Imm49 PF15575.6 gi|240103872|ref|YP_002960181.1| - 0.0081 16.0 0.2 0.18 11.6 0.2 2.0 1 1 0 1 1 1 1 Immunity protein 49 DUF3485 PF11984.8 gi|240103872|ref|YP_002960181.1| - 0.037 13.8 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3485) Glyco_hydro_46 PF01374.18 gi|240103872|ref|YP_002960181.1| - 0.042 13.5 0.0 0.05 13.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 46 YnfE PF17452.2 gi|240103872|ref|YP_002960181.1| - 0.042 14.1 0.1 0.071 13.4 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized YnfE-like Radical_SAM PF04055.21 gi|240103873|ref|YP_002960182.1| - 2.6e-22 79.9 3.7 6.9e-22 78.6 0.0 3.0 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|240103873|ref|YP_002960182.1| - 2.4e-06 27.8 1.6 4.4e-06 27.0 0.0 2.2 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|240103873|ref|YP_002960182.1| - 2.8e-06 27.4 0.9 1.4e-05 25.2 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3213 PF11491.8 gi|240103874|ref|YP_002960183.1| - 2e-36 124.0 1.1 2.4e-36 123.8 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3213) DUF617 PF04759.13 gi|240103874|ref|YP_002960183.1| - 0.13 12.3 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF617 DUF2139 PF09910.9 gi|240103875|ref|YP_002960184.1| - 3.9e-149 496.5 0.1 4.6e-149 496.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) PQQ_2 PF13360.6 gi|240103875|ref|YP_002960184.1| - 0.079 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 PQQ-like domain LrgA PF03788.14 gi|240103876|ref|YP_002960185.1| - 3e-30 104.0 9.0 3.4e-30 103.8 9.0 1.0 1 0 0 1 1 1 1 LrgA family 2HCT PF03390.15 gi|240103876|ref|YP_002960185.1| - 0.0013 17.4 2.9 0.0016 17.1 2.9 1.0 1 0 0 1 1 1 1 2-hydroxycarboxylate transporter family LrgB PF04172.16 gi|240103877|ref|YP_002960186.1| - 7.2e-70 234.8 16.4 8.1e-70 234.7 16.4 1.0 1 0 0 1 1 1 1 LrgB-like family TFX_C PF14601.6 gi|240103878|ref|YP_002960187.1| - 8.8e-23 80.1 0.0 1.2e-22 79.6 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|240103878|ref|YP_002960187.1| - 1.1e-06 28.1 1.9 2.1e-06 27.2 1.9 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|240103878|ref|YP_002960187.1| - 2.9e-05 23.5 0.4 5.1e-05 22.7 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|240103878|ref|YP_002960187.1| - 0.00014 21.4 0.3 0.00027 20.5 0.3 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.6 gi|240103878|ref|YP_002960187.1| - 0.001 19.0 0.1 0.0025 17.7 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|240103878|ref|YP_002960187.1| - 0.0016 18.7 0.9 0.004 17.5 0.9 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|240103878|ref|YP_002960187.1| - 0.0054 16.5 0.7 0.012 15.4 0.7 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|240103878|ref|YP_002960187.1| - 0.0079 16.2 0.8 0.019 15.0 0.8 1.7 1 1 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|240103878|ref|YP_002960187.1| - 0.012 15.3 0.2 0.026 14.3 0.2 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|240103878|ref|YP_002960187.1| - 0.015 15.2 0.1 0.04 13.9 0.1 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain KORA PF16509.5 gi|240103878|ref|YP_002960187.1| - 0.016 15.5 0.1 0.031 14.5 0.1 1.5 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_28 PF13518.6 gi|240103878|ref|YP_002960187.1| - 0.022 14.9 0.3 0.045 13.9 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|240103878|ref|YP_002960187.1| - 0.029 14.2 0.2 0.082 12.8 0.1 1.8 2 0 0 2 2 2 0 MarR family UPF0122 PF04297.14 gi|240103878|ref|YP_002960187.1| - 0.052 13.8 0.1 0.095 12.9 0.1 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_29 PF13551.6 gi|240103878|ref|YP_002960187.1| - 0.064 13.3 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix ELFV_dehydrog_N PF02812.18 gi|240103879|ref|YP_002960188.1| - 7.6e-55 184.3 0.0 1.1e-54 183.8 0.0 1.2 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ELFV_dehydrog PF00208.21 gi|240103880|ref|YP_002960189.1| - 6.5e-63 212.7 0.2 7.2e-63 212.5 0.2 1.0 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ChaB PF06150.12 gi|240103880|ref|YP_002960189.1| - 0.048 14.2 0.6 0.083 13.5 0.6 1.4 1 0 0 1 1 1 0 ChaB SNase PF00565.17 gi|240103881|ref|YP_002960190.1| - 5.7e-25 87.9 0.0 7.8e-25 87.5 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue RSV_NS2 PF03113.14 gi|240103881|ref|YP_002960190.1| - 0.039 14.0 0.0 0.058 13.4 0.0 1.4 1 0 0 1 1 1 0 Respiratory synctial virus non-structural protein NS2 AAA_17 PF13207.6 gi|240103882|ref|YP_002960191.1| - 0.0001 22.7 0.0 0.00026 21.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain FMN_dh PF01070.18 gi|240103883|ref|YP_002960192.1| - 5.7e-27 94.7 0.1 5e-16 58.7 0.2 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|240103883|ref|YP_002960192.1| - 3.4e-08 32.9 2.5 0.00011 21.3 1.6 3.3 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|240103883|ref|YP_002960192.1| - 0.001 18.5 0.7 0.0028 17.1 0.8 1.6 2 0 0 2 2 2 1 Nitronate monooxygenase Glu_synthase PF01645.17 gi|240103883|ref|YP_002960192.1| - 0.0065 15.7 0.3 0.034 13.3 0.3 2.0 2 0 0 2 2 2 1 Conserved region in glutamate synthase DUF561 PF04481.12 gi|240103883|ref|YP_002960192.1| - 0.025 13.7 0.0 0.041 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) HTH_16 PF12645.7 gi|240103883|ref|YP_002960192.1| - 0.13 12.4 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RMMBL PF07521.12 gi|240103884|ref|YP_002960193.1| - 5.8e-14 51.8 0.3 6.6e-13 48.4 0.0 2.7 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|240103884|ref|YP_002960193.1| - 1.1e-12 48.3 0.1 1.8e-12 47.7 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|240103884|ref|YP_002960193.1| - 2.5e-08 33.7 0.1 5.2e-08 32.6 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain polyprenyl_synt PF00348.17 gi|240103885|ref|YP_002960194.1| - 1.1e-70 237.7 0.0 1.4e-70 237.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DnaB_bind PF10410.9 gi|240103885|ref|YP_002960194.1| - 0.098 12.9 0.4 1.4 9.2 0.0 3.0 3 0 0 3 3 3 0 DnaB-helicase binding domain of primase DASH_Duo1 PF08651.10 gi|240103885|ref|YP_002960194.1| - 0.18 11.6 0.0 0.39 10.5 0.0 1.5 1 0 0 1 1 1 0 DASH complex subunit Duo1 DUF4951 PF16309.5 gi|240103887|ref|YP_002960196.1| - 0.083 13.0 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Domian of unknown function (DUF4951) tRNA-synt_1 PF00133.22 gi|240103889|ref|YP_002960198.1| - 3.6e-68 230.3 0.7 9.2e-68 229.0 0.7 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|240103889|ref|YP_002960198.1| - 6e-31 107.5 1.6 2.1e-30 105.7 1.6 2.0 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|240103889|ref|YP_002960198.1| - 7.5e-23 80.9 0.4 3.3e-10 39.3 0.1 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|240103889|ref|YP_002960198.1| - 3.2e-10 39.8 1.1 1e-09 38.2 0.1 2.4 3 0 0 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|240103889|ref|YP_002960198.1| - 3.6e-09 36.4 1.4 0.00053 19.4 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|240103889|ref|YP_002960198.1| - 0.00053 19.0 0.2 0.055 12.4 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|240103889|ref|YP_002960198.1| - 0.014 14.3 0.0 0.064 12.2 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (R) tRNA-synt_1b PF00579.25 gi|240103889|ref|YP_002960198.1| - 0.18 11.1 0.1 1.2 8.4 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) Arg_decarb_HB PF17810.1 gi|240103890|ref|YP_002960199.1| - 0.0014 18.8 0.4 0.36 11.1 0.1 3.5 3 0 0 3 3 3 1 Arginine decarboxylase helical bundle domain Cauli_AT PF03233.13 gi|240103890|ref|YP_002960199.1| - 0.0069 16.3 5.1 0.37 10.7 0.1 2.4 2 0 0 2 2 2 2 Aphid transmission protein T4SS PF07996.11 gi|240103890|ref|YP_002960199.1| - 0.13 12.7 0.3 0.3 11.5 0.2 1.6 1 1 0 1 1 1 0 Type IV secretion system proteins DUF4449 PF14613.6 gi|240103890|ref|YP_002960199.1| - 0.18 11.9 3.7 0.099 12.7 1.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4449) Cas_DxTHG PF09455.10 gi|240103890|ref|YP_002960199.1| - 0.57 9.7 12.9 0.83 9.2 12.3 1.5 1 1 1 2 2 2 0 CRISPR-associated (Cas) DxTHG family TRPM_tetra PF16519.5 gi|240103890|ref|YP_002960199.1| - 0.85 9.8 5.6 10 6.3 0.9 3.6 3 0 0 3 3 3 0 Tetramerisation domain of TRPM APG6_N PF17675.1 gi|240103890|ref|YP_002960199.1| - 6.4 7.3 10.6 16 6.1 3.1 2.5 2 0 0 2 2 2 0 Apg6 coiled-coil region Med30 PF11315.8 gi|240103890|ref|YP_002960199.1| - 9.9 6.3 12.8 15 5.8 2.7 3.9 2 2 0 3 3 3 0 Mediator complex subunit 30 Peptidase_M24 PF00557.24 gi|240103891|ref|YP_002960200.1| - 5.7e-68 228.7 0.1 7.3e-68 228.4 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|240103891|ref|YP_002960200.1| - 1e-19 71.5 0.0 1.7e-19 70.8 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain PAP2_3 PF14378.6 gi|240103892|ref|YP_002960201.1| - 3.1e-14 53.1 5.8 3.1e-14 53.1 5.8 1.8 2 1 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|240103892|ref|YP_002960201.1| - 1.3e-06 28.2 0.4 1.3e-06 28.2 0.4 2.1 3 0 0 3 3 3 1 PAP2 superfamily CPBP PF02517.16 gi|240103892|ref|YP_002960201.1| - 0.00044 20.6 1.2 0.0045 17.3 0.0 2.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease FixQ PF05545.11 gi|240103892|ref|YP_002960201.1| - 8.2 6.5 8.0 7.7 6.6 0.2 3.3 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ UPF0016 PF01169.19 gi|240103894|ref|YP_002960203.1| - 1.5e-21 76.5 3.7 1.7e-21 76.3 3.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein family UPF0016 TauE PF01925.19 gi|240103894|ref|YP_002960203.1| - 0.002 17.8 3.6 0.0021 17.7 3.6 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF456 PF04306.13 gi|240103894|ref|YP_002960203.1| - 0.21 11.9 7.9 0.51 10.6 7.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF456) DUF202 PF02656.15 gi|240103894|ref|YP_002960203.1| - 0.78 10.2 3.9 1.7 9.2 3.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Aminotran_1_2 PF00155.21 gi|240103895|ref|YP_002960204.1| - 7.7e-74 249.0 0.0 8.8e-74 248.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|240103895|ref|YP_002960204.1| - 1.6e-05 24.0 0.0 5.9e-05 22.2 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|240103895|ref|YP_002960204.1| - 2.2e-05 24.0 0.0 3.7e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|240103895|ref|YP_002960204.1| - 0.00018 20.9 0.0 0.00031 20.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|240103895|ref|YP_002960204.1| - 0.01 14.4 0.0 0.019 13.5 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|240103895|ref|YP_002960204.1| - 0.013 14.4 0.2 0.16 10.8 0.1 2.2 1 1 1 2 2 2 0 Allinase Radical_SAM PF04055.21 gi|240103895|ref|YP_002960204.1| - 0.024 15.0 0.2 0.1 12.9 0.0 2.1 2 1 0 2 2 2 0 Radical SAM superfamily CGI-121 PF08617.10 gi|240103896|ref|YP_002960205.1| - 5.6e-06 26.6 0.0 6.1e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Kinase binding protein CGI-121 RHH_1 PF01402.21 gi|240103897|ref|YP_002960206.1| - 3.2e-08 33.2 0.0 4.3e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|240103897|ref|YP_002960206.1| - 0.00012 22.2 0.0 0.00012 22.2 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|240103897|ref|YP_002960206.1| - 0.00086 19.7 0.0 0.00099 19.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VapB_antitoxin PF09957.9 gi|240103897|ref|YP_002960206.1| - 0.0046 16.8 0.0 0.0064 16.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB Tubulin PF00091.25 gi|240103898|ref|YP_002960207.1| - 5e-42 144.3 0.1 1e-41 143.3 0.1 1.6 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|240103898|ref|YP_002960207.1| - 9.7e-24 83.5 1.6 3.4e-23 81.7 1.6 2.0 1 0 0 1 1 1 1 FtsZ family, C-terminal domain AAA_31 PF13614.6 gi|240103899|ref|YP_002960208.1| - 8.7e-53 178.9 0.1 1.2e-52 178.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|240103899|ref|YP_002960208.1| - 2e-26 92.6 0.0 2.5e-26 92.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|240103899|ref|YP_002960208.1| - 3.6e-12 46.3 0.0 6.3e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|240103899|ref|YP_002960208.1| - 5.7e-12 45.6 1.2 4.9e-11 42.6 1.2 2.1 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|240103899|ref|YP_002960208.1| - 6.6e-10 38.7 0.1 7.8e-09 35.2 0.1 2.0 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|240103899|ref|YP_002960208.1| - 1.1e-09 38.1 0.1 2.7e-05 23.7 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|240103899|ref|YP_002960208.1| - 4.1e-08 32.8 0.4 4.3e-07 29.4 0.1 2.6 1 1 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 gi|240103899|ref|YP_002960208.1| - 0.00014 20.9 0.1 0.00021 20.4 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB VirC1 PF07015.11 gi|240103899|ref|YP_002960208.1| - 0.00027 20.3 0.2 0.0024 17.2 0.0 2.2 2 0 0 2 2 2 1 VirC1 protein CLP1_P PF16575.5 gi|240103899|ref|YP_002960208.1| - 0.094 12.5 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop FTHFS PF01268.19 gi|240103899|ref|YP_002960208.1| - 0.1 10.8 0.0 0.12 10.6 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase PGAP1 PF07819.13 gi|240103900|ref|YP_002960209.1| - 0.036 13.8 0.0 0.041 13.6 0.0 1.1 1 0 0 1 1 1 0 PGAP1-like protein CTP_transf_like PF01467.26 gi|240103901|ref|YP_002960210.1| - 2.4e-24 86.2 0.0 2.7e-24 86.0 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|240103901|ref|YP_002960210.1| - 6.4e-05 22.9 0.0 0.00082 19.3 0.1 2.1 2 0 0 2 2 2 1 FAD synthetase Transketolase_C PF02780.20 gi|240103901|ref|YP_002960210.1| - 0.067 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Transketolase, C-terminal domain PUA PF01472.20 gi|240103902|ref|YP_002960211.1| - 2.6e-22 78.5 1.6 2.6e-22 78.5 1.6 1.8 2 1 0 2 2 2 1 PUA domain DUF1947 PF09183.10 gi|240103902|ref|YP_002960211.1| - 2.9e-07 30.7 0.3 7e-07 29.5 0.3 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|240103902|ref|YP_002960211.1| - 5.4e-06 26.6 0.1 1e-05 25.7 0.1 1.5 1 0 0 1 1 1 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|240103902|ref|YP_002960211.1| - 7.1e-05 23.4 0.0 0.0001 22.9 0.0 1.3 1 0 0 1 1 1 1 Pre-PUA-like domain PUA_3 PF17785.1 gi|240103902|ref|YP_002960211.1| - 0.049 13.4 0.4 1.1 9.1 0.1 2.3 2 0 0 2 2 2 0 PUA-like domain OMPdecase PF00215.24 gi|240103903|ref|YP_002960212.1| - 1.2e-36 126.5 0.0 1.4e-36 126.2 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF4443 PF14544.6 gi|240103904|ref|YP_002960213.1| - 1.3e-52 176.7 0.1 1.7e-52 176.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4443) HTH_Crp_2 PF13545.6 gi|240103904|ref|YP_002960213.1| - 0.0017 18.3 0.2 0.004 17.1 0.1 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|240103904|ref|YP_002960213.1| - 0.015 14.9 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_12 PF08461.10 gi|240103904|ref|YP_002960213.1| - 0.02 14.8 0.5 0.041 13.8 0.1 1.7 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|240103904|ref|YP_002960213.1| - 0.025 14.5 0.5 0.22 11.4 0.1 2.3 2 1 0 2 2 2 0 MarR family HTH_29 PF13551.6 gi|240103904|ref|YP_002960213.1| - 0.026 14.5 0.1 0.04 13.9 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Ribosomal_S19e PF01090.19 gi|240103904|ref|YP_002960213.1| - 0.029 14.1 0.1 0.051 13.3 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e PaaX PF07848.12 gi|240103904|ref|YP_002960213.1| - 0.029 14.6 0.2 0.059 13.6 0.2 1.5 1 0 0 1 1 1 0 PaaX-like protein SMC_ScpB PF04079.16 gi|240103904|ref|YP_002960213.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB GntR PF00392.21 gi|240103904|ref|YP_002960213.1| - 0.12 12.1 0.1 0.25 11.0 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|240103904|ref|YP_002960213.1| - 0.18 11.4 0.4 1.1 8.9 0.2 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Inos-1-P_synth PF01658.17 gi|240103905|ref|YP_002960214.1| - 1.8e-19 70.0 0.0 3.3e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|240103905|ref|YP_002960214.1| - 1.4e-10 41.0 0.0 3.2e-10 39.9 0.0 1.8 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase SBP_bac_1 PF01547.25 gi|240103906|ref|YP_002960215.1| - 2.9e-20 73.5 16.3 2.9e-20 73.5 16.3 2.0 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|240103907|ref|YP_002960216.1| - 1.3e-11 44.6 17.9 1.3e-11 44.6 17.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ESSS PF10183.9 gi|240103907|ref|YP_002960216.1| - 0.14 12.4 1.4 0.43 10.8 0.1 2.1 1 1 1 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) DUF5392 PF17370.2 gi|240103907|ref|YP_002960216.1| - 0.33 11.1 1.3 4.7 7.3 0.0 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5392) BPD_transp_1 PF00528.22 gi|240103908|ref|YP_002960217.1| - 1.1e-08 35.0 18.6 1.1e-08 35.0 18.6 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|240103909|ref|YP_002960218.1| - 1.4e-34 119.5 0.0 2.3e-34 118.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|240103909|ref|YP_002960218.1| - 3.1e-09 37.5 0.0 2.4e-08 34.7 0.0 2.4 2 0 0 2 2 2 1 MalK OB fold domain AAA_21 PF13304.6 gi|240103909|ref|YP_002960218.1| - 3.1e-08 33.8 0.4 0.0051 16.7 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|240103909|ref|YP_002960218.1| - 3.4e-06 27.1 0.0 7.7e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_29 PF13555.6 gi|240103909|ref|YP_002960218.1| - 6.5e-05 22.6 0.0 0.00014 21.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|240103909|ref|YP_002960218.1| - 0.00024 20.6 0.0 0.11 11.9 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|240103909|ref|YP_002960218.1| - 0.0039 17.1 0.0 0.0085 16.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase T2SSE PF00437.20 gi|240103909|ref|YP_002960218.1| - 0.017 14.2 0.0 0.033 13.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|240103909|ref|YP_002960218.1| - 0.021 15.2 0.0 0.06 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.15 gi|240103909|ref|YP_002960218.1| - 0.036 14.0 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain G-alpha PF00503.20 gi|240103909|ref|YP_002960218.1| - 0.051 12.7 0.0 0.058 12.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_22 PF13401.6 gi|240103909|ref|YP_002960218.1| - 0.053 13.8 0.1 0.25 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|240103909|ref|YP_002960218.1| - 0.065 13.7 0.5 0.14 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|240103909|ref|YP_002960218.1| - 0.069 12.7 0.0 0.27 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|240103909|ref|YP_002960218.1| - 0.072 12.8 0.0 0.22 11.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|240103909|ref|YP_002960218.1| - 0.08 12.1 0.0 0.12 11.6 0.0 1.3 1 1 0 1 1 1 0 NB-ARC domain CysA_C_terminal PF17850.1 gi|240103909|ref|YP_002960218.1| - 0.1 13.2 0.0 0.26 11.9 0.0 1.8 1 0 0 1 1 1 0 CysA C-terminal regulatory domain Mg_chelatase PF01078.21 gi|240103909|ref|YP_002960218.1| - 0.12 11.8 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TniB PF05621.11 gi|240103909|ref|YP_002960218.1| - 0.15 11.5 0.3 2.8 7.3 0.1 2.3 1 1 1 2 2 2 0 Bacterial TniB protein AAA_15 PF13175.6 gi|240103909|ref|YP_002960218.1| - 0.15 11.7 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|240103909|ref|YP_002960218.1| - 0.16 11.9 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NTP_transf_3 PF12804.7 gi|240103910|ref|YP_002960219.1| - 2.1e-18 67.2 0.0 5.7e-18 65.8 0.0 1.7 2 0 0 2 2 2 1 MobA-like NTP transferase domain CDP-OH_P_transf PF01066.21 gi|240103910|ref|YP_002960219.1| - 3.1e-10 40.7 0.6 3.1e-10 40.7 0.6 3.3 3 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase NTP_transferase PF00483.23 gi|240103910|ref|YP_002960219.1| - 1.2e-07 31.6 0.0 1.1e-06 28.4 0.0 2.0 1 1 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|240103910|ref|YP_002960219.1| - 1.2e-05 25.1 0.0 2.1e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Diphthami_syn_2 PF01902.17 gi|240103911|ref|YP_002960220.1| - 1.2e-87 293.0 1.3 1.4e-87 292.8 1.3 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|240103911|ref|YP_002960220.1| - 0.0031 17.0 0.0 0.0045 16.5 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|240103911|ref|YP_002960220.1| - 0.019 13.7 0.0 0.031 13.1 0.0 1.5 1 1 0 1 1 1 0 tRNA methyl transferase ThiI PF02568.14 gi|240103911|ref|YP_002960220.1| - 0.081 12.5 0.0 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) AA_permease_2 PF13520.6 gi|240103912|ref|YP_002960221.1| - 1.2e-45 156.1 46.2 1.6e-45 155.8 46.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|240103912|ref|YP_002960221.1| - 2.4e-44 151.7 42.0 3.1e-44 151.4 42.0 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|240103912|ref|YP_002960221.1| - 2.5e-24 86.4 0.5 2.6e-14 53.9 0.0 3.3 2 1 0 2 2 2 2 Universal stress protein family SafA PF17073.5 gi|240103912|ref|YP_002960221.1| - 2.7 8.0 8.5 0.32 11.0 0.4 3.3 3 0 0 3 3 3 0 Two-component-system connector protein BPS PF08947.10 gi|240103913|ref|YP_002960222.1| - 0.17 11.7 3.1 0.11 12.3 1.2 1.8 2 1 0 2 2 2 0 BPS (Between PH and SH2) Mucin PF01456.17 gi|240103914|ref|YP_002960223.1| - 0.00063 19.7 20.5 0.001 19.0 20.5 1.3 1 0 0 1 1 1 1 Mucin-like glycoprotein NEAT PF05031.12 gi|240103914|ref|YP_002960223.1| - 0.0078 16.8 3.0 0.76 10.4 0.0 3.5 3 0 0 3 3 3 1 Iron Transport-associated domain ABC_tran PF00005.27 gi|240103915|ref|YP_002960224.1| - 2.7e-26 92.7 0.0 4.1e-26 92.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240103915|ref|YP_002960224.1| - 2.6e-10 40.6 0.5 0.00045 20.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SepRS_C PF18006.1 gi|240103915|ref|YP_002960224.1| - 0.0096 16.0 0.1 7 6.8 0.0 2.7 2 0 0 2 2 2 2 O-phosphoseryl-tRNA synthetase C-terminal domain AAA_29 PF13555.6 gi|240103915|ref|YP_002960224.1| - 0.027 14.2 0.1 0.054 13.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|240103915|ref|YP_002960224.1| - 0.039 14.2 0.1 3.9 7.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|240103915|ref|YP_002960224.1| - 0.042 14.4 1.3 0.058 13.9 0.3 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|240103915|ref|YP_002960224.1| - 0.048 13.4 0.0 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|240103915|ref|YP_002960224.1| - 0.049 13.4 0.0 0.076 12.8 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SMC_N PF02463.19 gi|240103915|ref|YP_002960224.1| - 0.053 13.0 0.1 1.1 8.7 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.8 gi|240103915|ref|YP_002960224.1| - 0.06 13.3 1.1 0.088 12.8 0.1 1.9 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter Mg_chelatase PF01078.21 gi|240103915|ref|YP_002960224.1| - 0.081 12.3 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.22 gi|240103915|ref|YP_002960224.1| - 0.11 12.1 0.0 0.53 9.9 0.0 2.1 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 gi|240103915|ref|YP_002960224.1| - 0.16 12.2 0.0 0.33 11.2 0.0 1.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit 12TM_1 PF09847.9 gi|240103916|ref|YP_002960225.1| - 7.7e-80 269.2 16.8 8.8e-80 269.0 16.8 1.0 1 0 0 1 1 1 1 Membrane protein of 12 TMs SVM_signal PF12113.8 gi|240103916|ref|YP_002960225.1| - 1.2 9.1 3.6 2.1 8.3 0.3 2.8 2 0 0 2 2 2 0 SVM protein signal sequence DUF498 PF04430.14 gi|240103917|ref|YP_002960226.1| - 6.5e-13 48.7 0.0 7.6e-13 48.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) DUF3931 PF13082.6 gi|240103917|ref|YP_002960226.1| - 0.11 12.6 0.1 0.28 11.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3931) NUDIX PF00293.28 gi|240103918|ref|YP_002960227.1| - 3.8e-23 82.0 0.0 6e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|240103918|ref|YP_002960227.1| - 5.9e-05 22.6 0.0 0.0049 16.4 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) DUF2637 PF10935.8 gi|240103918|ref|YP_002960227.1| - 0.15 11.9 0.0 0.26 11.2 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2637) DUF998 PF06197.13 gi|240103919|ref|YP_002960228.1| - 3.5e-23 82.1 20.9 3.9e-23 82.0 20.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF3165 PF11364.8 gi|240103919|ref|YP_002960228.1| - 0.15 12.4 2.0 0.21 12.0 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3165) DUF296 PF03479.15 gi|240103920|ref|YP_002960229.1| - 5.4e-23 81.4 0.0 6.2e-23 81.2 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain DAGK_prokar PF01219.19 gi|240103921|ref|YP_002960230.1| - 0.053 13.4 0.0 0.085 12.7 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic diacylglycerol kinase PTPS PF01242.19 gi|240103922|ref|YP_002960231.1| - 2.4e-26 92.1 0.0 3.1e-26 91.7 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase PfkB PF00294.24 gi|240103923|ref|YP_002960232.1| - 3.4e-09 36.4 0.0 1.1e-07 31.5 0.0 2.0 1 1 0 1 1 1 1 pfkB family carbohydrate kinase 2-Hacid_dh_C PF02826.19 gi|240103924|ref|YP_002960233.1| - 4.9e-69 231.2 0.0 7.4e-69 230.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|240103924|ref|YP_002960233.1| - 3.4e-35 120.6 0.0 3.9e-35 120.4 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|240103924|ref|YP_002960233.1| - 6.2e-08 33.0 0.0 1.6e-07 31.6 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|240103924|ref|YP_002960233.1| - 1.2e-07 32.2 0.0 2.6e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|240103924|ref|YP_002960233.1| - 4.7e-05 23.0 0.0 0.00011 21.8 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|240103924|ref|YP_002960233.1| - 9.2e-05 22.8 0.0 0.00025 21.5 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|240103924|ref|YP_002960233.1| - 0.00077 19.6 0.1 0.013 15.5 0.0 2.5 2 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|240103924|ref|YP_002960233.1| - 0.0012 18.2 0.0 0.0087 15.4 0.0 2.2 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain PDH PF02153.17 gi|240103924|ref|YP_002960233.1| - 0.0051 15.9 0.0 0.0086 15.1 0.0 1.4 1 0 0 1 1 1 1 Prephenate dehydrogenase Rossmann-like PF10727.9 gi|240103924|ref|YP_002960233.1| - 0.021 14.7 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 Rossmann-like domain Sacchrp_dh_NADP PF03435.18 gi|240103924|ref|YP_002960233.1| - 0.027 14.7 0.2 0.23 11.7 0.2 2.3 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|240103924|ref|YP_002960233.1| - 0.043 13.9 0.1 0.13 12.3 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Gp_dh_N PF00044.24 gi|240103924|ref|YP_002960233.1| - 0.082 13.3 1.0 0.2 12.0 1.0 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|240103924|ref|YP_002960233.1| - 0.13 12.2 0.3 3.3 7.7 0.0 2.3 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 gi|240103924|ref|YP_002960233.1| - 0.14 12.7 0.0 0.25 11.9 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain tRNA_U5-meth_tr PF05958.11 gi|240103925|ref|YP_002960234.1| - 1.2e-21 77.1 0.0 4.2e-14 52.3 0.0 2.1 1 1 1 2 2 2 2 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|240103925|ref|YP_002960234.1| - 4.7e-10 39.3 0.0 7.5e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|240103925|ref|YP_002960234.1| - 5e-08 32.9 0.0 1.2e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|240103925|ref|YP_002960234.1| - 2.6e-07 31.3 0.0 2.3e-06 28.2 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|240103925|ref|YP_002960234.1| - 6e-06 26.1 0.0 8.9e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240103925|ref|YP_002960234.1| - 2.6e-05 24.8 0.0 0.00034 21.2 0.0 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240103925|ref|YP_002960234.1| - 3.6e-05 23.6 0.0 6.8e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|240103925|ref|YP_002960234.1| - 4.6e-05 23.0 0.0 6.6e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|240103925|ref|YP_002960234.1| - 0.0031 17.2 0.0 0.0049 16.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|240103925|ref|YP_002960234.1| - 0.0095 15.5 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.14 gi|240103925|ref|YP_002960234.1| - 0.083 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB N6_N4_Mtase PF01555.18 gi|240103925|ref|YP_002960234.1| - 0.13 12.0 0.0 0.21 11.2 0.0 1.4 1 1 0 1 1 1 0 DNA methylase Lar_restr_allev PF14354.6 gi|240103927|ref|YP_002960236.1| - 1.6e-05 25.2 0.1 1.9e-05 24.9 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_13 PF09855.9 gi|240103927|ref|YP_002960236.1| - 0.00023 21.2 1.2 0.0006 19.9 1.2 1.6 1 1 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-RRN7 PF11781.8 gi|240103927|ref|YP_002960236.1| - 0.00029 20.4 1.3 0.0051 16.5 0.1 2.3 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|240103927|ref|YP_002960236.1| - 0.00044 19.7 0.4 0.9 9.1 0.0 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding UPF0547 PF10571.9 gi|240103927|ref|YP_002960236.1| - 0.017 15.2 0.6 4.6 7.4 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prim_Zn_Ribbon PF08273.12 gi|240103927|ref|YP_002960236.1| - 0.022 15.1 0.6 0.25 11.7 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.6 gi|240103927|ref|YP_002960236.1| - 0.022 14.1 2.3 0.74 9.3 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|240103927|ref|YP_002960236.1| - 0.024 14.3 5.4 0.062 13.0 0.6 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|240103927|ref|YP_002960236.1| - 0.035 14.0 4.0 2.3 8.2 0.3 2.7 1 1 1 2 2 2 0 zinc-ribbon domain zf-piccolo PF05715.13 gi|240103927|ref|YP_002960236.1| - 0.047 13.8 0.1 0.065 13.4 0.1 1.2 1 0 0 1 1 1 0 Piccolo Zn-finger HypA PF01155.19 gi|240103927|ref|YP_002960236.1| - 0.047 13.7 1.1 0.43 10.6 0.1 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PriA_CRR PF18319.1 gi|240103927|ref|YP_002960236.1| - 0.057 13.4 0.7 6.9 6.8 0.0 2.3 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain A2L_zn_ribbon PF08792.10 gi|240103927|ref|YP_002960236.1| - 0.059 13.1 1.0 0.99 9.2 0.3 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Ribosomal_L32p PF01783.23 gi|240103927|ref|YP_002960236.1| - 0.063 13.5 0.3 0.26 11.6 0.0 1.9 2 0 0 2 2 2 0 Ribosomal L32p protein family Rubredoxin_2 PF18073.1 gi|240103927|ref|YP_002960236.1| - 0.28 11.0 2.9 1.5 8.6 0.1 2.5 3 0 0 3 3 3 0 Rubredoxin metal binding domain GTP_EFTU PF00009.27 gi|240103928|ref|YP_002960237.1| - 6.1e-34 117.3 0.1 2.1e-32 112.2 0.0 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|240103928|ref|YP_002960237.1| - 1.1e-30 105.4 1.1 5e-30 103.2 1.1 2.3 1 0 0 1 1 1 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|240103928|ref|YP_002960237.1| - 3.4e-24 85.0 1.8 1e-23 83.5 1.8 1.8 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|240103928|ref|YP_002960237.1| - 4.8e-18 65.3 9.9 8.9e-14 51.6 0.2 3.4 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|240103928|ref|YP_002960237.1| - 8.1e-09 35.6 0.1 3.7e-08 33.4 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|240103928|ref|YP_002960237.1| - 0.0014 18.7 0.1 0.75 9.8 0.0 3.5 2 1 1 3 3 3 1 Dynamin family Roc PF08477.13 gi|240103928|ref|YP_002960237.1| - 0.0017 18.6 0.0 0.0079 16.4 0.0 2.2 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 gi|240103928|ref|YP_002960237.1| - 0.036 14.1 0.0 1.7 8.7 0.0 3.1 3 0 0 3 3 3 0 C-terminal region of MMR_HSR1 domain MobB PF03205.14 gi|240103928|ref|YP_002960237.1| - 0.037 13.9 0.5 18 5.2 0.1 3.4 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|240103928|ref|YP_002960237.1| - 0.049 13.4 0.0 0.19 11.5 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Ras PF00071.22 gi|240103928|ref|YP_002960237.1| - 0.05 13.2 0.0 0.17 11.5 0.0 1.9 1 1 0 1 1 1 0 Ras family RPAP1_N PF08621.10 gi|240103928|ref|YP_002960237.1| - 0.051 13.3 0.5 0.18 11.6 0.5 1.9 1 0 0 1 1 1 0 RPAP1-like, N-terminal cobW PF02492.19 gi|240103928|ref|YP_002960237.1| - 0.053 13.1 1.0 2.3 7.8 0.1 3.2 3 1 1 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain AcrZ PF10766.9 gi|240103929|ref|YP_002960238.1| - 0.82 9.3 6.3 13 5.4 1.8 2.7 2 1 0 2 2 2 0 Multidrug efflux pump-associated protein AcrZ NDK PF00334.19 gi|240103930|ref|YP_002960239.1| - 6.8e-57 191.3 0.0 8.6e-57 190.9 0.0 1.1 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|240103931|ref|YP_002960240.1| - 1.1e-25 89.7 2.9 1.2e-25 89.5 2.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|240103931|ref|YP_002960240.1| - 0.003 17.4 2.2 0.0049 16.8 2.2 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-C2HC_2 PF13913.6 gi|240103931|ref|YP_002960240.1| - 0.031 14.2 0.4 0.031 14.2 0.4 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type YHS PF04945.13 gi|240103931|ref|YP_002960240.1| - 0.045 13.9 0.9 0.065 13.3 0.9 1.3 1 0 0 1 1 1 0 YHS domain DUF3268 PF11672.8 gi|240103931|ref|YP_002960240.1| - 0.065 13.6 0.1 0.066 13.5 0.1 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain VATC PF18716.1 gi|240103931|ref|YP_002960240.1| - 1.1 9.2 5.7 3 7.8 5.7 1.7 1 1 0 1 1 1 0 Vms1-associating treble clef domain DUF2256 PF10013.9 gi|240103931|ref|YP_002960240.1| - 6.5 7.0 9.8 3.8 7.7 4.6 2.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) Ribosomal_S28e PF01200.18 gi|240103932|ref|YP_002960241.1| - 5.5e-30 103.2 5.4 6.1e-30 103.0 5.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|240103933|ref|YP_002960242.1| - 1.8e-32 110.9 0.3 2.2e-32 110.6 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|240103933|ref|YP_002960242.1| - 9.6e-05 22.2 0.1 0.00014 21.6 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|240103933|ref|YP_002960242.1| - 0.018 15.5 0.1 0.021 15.3 0.1 1.2 1 0 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.12 gi|240103933|ref|YP_002960242.1| - 0.075 13.3 0.1 1.1 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) TruD PF01142.18 gi|240103934|ref|YP_002960243.1| - 3.4e-129 431.3 0.0 4e-129 431.1 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.16 gi|240103935|ref|YP_002960244.1| - 1.8e-43 147.5 0.0 2e-43 147.4 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TRAP_beta PF05753.14 gi|240103936|ref|YP_002960245.1| - 1.7e-08 34.1 0.0 3e-06 26.7 0.0 2.3 2 0 0 2 2 2 2 Translocon-associated protein beta (TRAPB) BatD PF13584.6 gi|240103936|ref|YP_002960245.1| - 3.5e-05 22.8 0.5 0.00064 18.7 0.1 2.5 2 1 0 2 2 2 1 Oxygen tolerance DUF11 PF01345.18 gi|240103936|ref|YP_002960245.1| - 0.0019 18.5 0.2 0.0079 16.5 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF11 tRNA-synt_2 PF00152.20 gi|240103937|ref|YP_002960246.1| - 6.6e-97 324.4 0.9 7.8e-97 324.1 0.9 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|240103937|ref|YP_002960246.1| - 1.2e-11 44.5 0.1 2e-11 43.7 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|240103937|ref|YP_002960246.1| - 0.15 11.5 1.4 11 5.5 0.0 3.0 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) KH_5 PF13184.6 gi|240103938|ref|YP_002960247.1| - 3.4e-11 43.1 1.1 7e-11 42.1 1.1 1.6 1 0 0 1 1 1 1 NusA-like KH domain KH_2 PF07650.17 gi|240103938|ref|YP_002960247.1| - 1.5e-08 34.3 1.4 1.8e-08 34.1 0.5 1.7 2 0 0 2 2 2 1 KH domain Ribosomal_S7e PF01251.18 gi|240103938|ref|YP_002960247.1| - 1.2e-05 25.2 0.1 1.2e-05 25.2 0.1 1.8 3 0 0 3 3 3 1 Ribosomal protein S7e KH_1 PF00013.29 gi|240103938|ref|YP_002960247.1| - 8.1e-05 22.4 1.4 0.00014 21.6 1.4 1.4 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 gi|240103938|ref|YP_002960247.1| - 0.00024 20.9 1.7 0.00042 20.1 0.6 2.0 3 0 0 3 3 3 1 KH domain HD PF01966.22 gi|240103939|ref|YP_002960248.1| - 1.7e-19 70.3 1.4 1.7e-19 70.3 1.4 1.9 2 0 0 2 2 2 1 HD domain DUF4202 PF13875.6 gi|240103939|ref|YP_002960248.1| - 0.06 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4202) Fe_dep_repr_C PF02742.15 gi|240103939|ref|YP_002960248.1| - 0.17 12.0 2.0 0.3 11.2 0.1 2.3 2 1 0 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain DUF2226 PF09987.9 gi|240103940|ref|YP_002960249.1| - 3.7e-12 46.2 0.2 5e-12 45.8 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2226) DUF4388 PF14332.6 gi|240103940|ref|YP_002960249.1| - 0.00057 20.1 0.0 0.016 15.5 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4388) YusW PF14039.6 gi|240103940|ref|YP_002960249.1| - 0.0085 16.6 0.0 0.035 14.6 0.0 1.8 2 0 0 2 2 2 1 YusW-like protein Robl_LC7 PF03259.17 gi|240103941|ref|YP_002960250.1| - 4.5e-17 61.6 1.6 5.5e-17 61.3 1.6 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain LAMTOR5 PF16672.5 gi|240103941|ref|YP_002960250.1| - 0.0035 17.2 0.2 0.0048 16.8 0.2 1.2 1 0 0 1 1 1 1 Ragulator complex protein LAMTOR5 MAPKK1_Int PF08923.10 gi|240103941|ref|YP_002960250.1| - 0.012 15.4 0.3 0.016 15.0 0.3 1.2 1 0 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting CagZ PF09053.10 gi|240103942|ref|YP_002960251.1| - 0.046 13.3 0.0 0.068 12.8 0.0 1.3 1 0 0 1 1 1 0 CagZ DUF4392 PF14336.6 gi|240103944|ref|YP_002960253.1| - 1.8e-65 221.3 0.0 6.6e-49 166.9 0.1 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4392) HAD_2 PF13419.6 gi|240103946|ref|YP_002960255.1| - 1.5e-31 109.9 0.0 2e-31 109.4 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240103946|ref|YP_002960255.1| - 1e-18 68.4 0.0 5.4e-17 62.8 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|240103946|ref|YP_002960255.1| - 4.9e-13 48.9 0.0 1e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|240103946|ref|YP_002960255.1| - 1.5e-09 38.6 0.0 2e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|240103946|ref|YP_002960255.1| - 0.047 13.3 0.1 0.99 9.0 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase FtsZ_C PF12327.8 gi|240103947|ref|YP_002960256.1| - 0.097 13.0 0.2 0.2 12.0 0.2 1.5 1 0 0 1 1 1 0 FtsZ family, C-terminal domain OMPdecase PF00215.24 gi|240103948|ref|YP_002960257.1| - 8.4e-28 97.5 4.9 8.4e-28 97.5 4.9 1.7 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family SIS PF01380.22 gi|240103948|ref|YP_002960257.1| - 2.3e-21 76.0 0.1 5.9e-21 74.7 0.1 1.7 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|240103948|ref|YP_002960257.1| - 2.4e-09 37.3 1.6 1.6e-07 31.4 0.1 2.7 1 1 1 2 2 2 1 SIS domain ThiG PF05690.14 gi|240103948|ref|YP_002960257.1| - 7e-07 28.8 1.1 1.2e-06 28.0 0.6 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|240103948|ref|YP_002960257.1| - 7.8e-06 25.5 0.6 3.9e-05 23.2 0.4 2.0 1 1 1 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.12 gi|240103948|ref|YP_002960257.1| - 1e-05 24.9 0.5 3.5e-05 23.1 0.5 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF561) TMP-TENI PF02581.17 gi|240103948|ref|YP_002960257.1| - 1.2e-05 24.7 3.8 3e-05 23.5 2.6 2.2 2 1 0 2 2 2 1 Thiamine monophosphate synthase PEP_mutase PF13714.6 gi|240103948|ref|YP_002960257.1| - 5.1e-05 22.8 3.5 0.0051 16.3 0.2 2.6 2 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase IGPS PF00218.21 gi|240103948|ref|YP_002960257.1| - 0.00015 21.0 0.9 0.00055 19.2 0.9 2.0 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase HMGL-like PF00682.19 gi|240103948|ref|YP_002960257.1| - 0.00034 20.3 1.4 0.096 12.2 0.2 2.3 1 1 1 2 2 2 2 HMGL-like ADH_zinc_N PF00107.26 gi|240103948|ref|YP_002960257.1| - 0.0005 20.1 3.4 0.0046 16.9 0.3 2.6 2 1 1 3 3 3 2 Zinc-binding dehydrogenase NMO PF03060.15 gi|240103948|ref|YP_002960257.1| - 0.0006 19.3 1.7 0.00089 18.7 1.7 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase QRPTase_C PF01729.19 gi|240103948|ref|YP_002960257.1| - 0.0007 19.4 3.5 0.036 13.8 0.1 2.5 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.14 gi|240103948|ref|YP_002960257.1| - 0.00079 18.7 1.7 0.0017 17.6 1.7 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Ribul_P_3_epim PF00834.19 gi|240103948|ref|YP_002960257.1| - 0.0019 17.6 1.7 0.0041 16.5 1.6 1.7 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family Trp_syntA PF00290.20 gi|240103948|ref|YP_002960257.1| - 0.0044 15.9 2.9 0.065 12.1 1.4 2.6 2 1 1 3 3 3 1 Tryptophan synthase alpha chain Dus PF01207.17 gi|240103948|ref|YP_002960257.1| - 0.0083 15.3 0.5 0.019 14.1 0.5 1.6 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) 4HFCP_synth PF04476.13 gi|240103948|ref|YP_002960257.1| - 0.0084 15.9 0.1 0.032 14.0 0.1 2.1 1 1 0 1 1 1 1 4-HFC-P synthase Aldolase PF01081.19 gi|240103948|ref|YP_002960257.1| - 0.019 14.4 0.8 0.45 9.9 0.8 2.3 1 1 0 1 1 1 0 KDPG and KHG aldolase PRAI PF00697.22 gi|240103948|ref|YP_002960257.1| - 0.037 13.8 0.5 0.072 12.8 0.5 1.5 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AP_endonuc_2 PF01261.24 gi|240103948|ref|YP_002960257.1| - 0.061 12.8 0.2 0.44 9.9 0.1 2.5 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel FMN_dh PF01070.18 gi|240103948|ref|YP_002960257.1| - 0.076 12.0 1.6 0.17 10.9 1.4 1.5 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Radical_SAM PF04055.21 gi|240103948|ref|YP_002960257.1| - 0.31 11.4 1.1 8.1 6.8 1.2 2.8 2 1 0 2 2 2 0 Radical SAM superfamily NMT1_3 PF16868.5 gi|240103949|ref|YP_002960258.1| - 1.6e-88 296.9 4.3 1.9e-88 296.7 4.3 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|240103949|ref|YP_002960258.1| - 1.2e-11 45.0 3.2 3.6e-10 40.1 0.2 2.7 2 1 1 3 3 3 2 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|240103949|ref|YP_002960258.1| - 7.2e-10 38.9 4.2 5.9e-09 35.9 0.9 2.2 1 1 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|240103949|ref|YP_002960258.1| - 3.6e-05 23.3 3.9 0.0002 20.9 0.4 2.2 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 Asp_Glu_race PF01177.22 gi|240103949|ref|YP_002960258.1| - 0.00039 20.3 0.0 0.00073 19.4 0.0 1.5 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase SBP_bac_11 PF13531.6 gi|240103949|ref|YP_002960258.1| - 0.0016 18.2 3.6 0.0043 16.8 3.6 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein NMT1_2 PF13379.6 gi|240103949|ref|YP_002960258.1| - 0.0042 16.8 0.8 0.0062 16.3 0.8 1.3 1 0 0 1 1 1 1 NMT1-like family DUF1850 PF08905.11 gi|240103950|ref|YP_002960259.1| - 2.1e-12 47.2 0.0 3.1e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) DctM PF06808.12 gi|240103951|ref|YP_002960260.1| - 3.4e-83 279.8 53.1 1.7e-54 185.3 29.7 2.8 2 1 1 3 3 3 2 Tripartite ATP-independent periplasmic transporter, DctM component Arabinose_Isome PF02610.15 gi|240103952|ref|YP_002960261.1| - 0.011 14.9 0.0 0.016 14.5 0.0 1.1 1 0 0 1 1 1 0 L-arabinose isomerase HTH_24 PF13412.6 gi|240103954|ref|YP_002960263.1| - 2.4e-14 52.6 0.1 3.9e-14 51.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|240103954|ref|YP_002960263.1| - 8.1e-14 51.2 0.2 1.3e-13 50.5 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|240103954|ref|YP_002960263.1| - 1.2e-13 50.8 0.0 2.2e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|240103954|ref|YP_002960263.1| - 3.9e-08 33.1 0.1 7.1e-08 32.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_Mga PF08280.11 gi|240103954|ref|YP_002960263.1| - 8.8e-08 32.1 0.0 1.5e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_20 PF12840.7 gi|240103954|ref|YP_002960263.1| - 1.2e-06 28.5 0.0 2.2e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|240103954|ref|YP_002960263.1| - 7.2e-05 22.2 0.2 0.00013 21.4 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|240103954|ref|YP_002960263.1| - 7.7e-05 22.4 0.1 0.00012 21.8 0.1 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HxlR PF01638.17 gi|240103954|ref|YP_002960263.1| - 9.8e-05 22.1 0.0 0.00015 21.6 0.0 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|240103954|ref|YP_002960263.1| - 0.0003 20.6 0.0 0.00056 19.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|240103954|ref|YP_002960263.1| - 0.00043 20.3 0.0 0.00064 19.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|240103954|ref|YP_002960263.1| - 0.00084 19.0 0.1 0.0035 17.0 0.1 2.0 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|240103954|ref|YP_002960263.1| - 0.0011 18.7 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|240103954|ref|YP_002960263.1| - 0.0013 18.5 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|240103954|ref|YP_002960263.1| - 0.0022 17.9 0.0 0.0059 16.5 0.1 1.7 2 0 0 2 2 1 1 MarR family Rrf2 PF02082.20 gi|240103954|ref|YP_002960263.1| - 0.0023 18.2 0.1 0.0075 16.6 0.1 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|240103954|ref|YP_002960263.1| - 0.0026 17.7 0.1 0.0041 17.1 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|240103954|ref|YP_002960263.1| - 0.0035 17.1 0.0 0.0058 16.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.19 gi|240103954|ref|YP_002960263.1| - 0.0063 16.4 0.1 0.017 15.0 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB RepL PF05732.11 gi|240103954|ref|YP_002960263.1| - 0.0097 15.4 0.5 0.017 14.6 0.0 1.6 2 0 0 2 2 2 1 Firmicute plasmid replication protein (RepL) TFIIE_alpha PF02002.17 gi|240103954|ref|YP_002960263.1| - 0.012 15.5 0.1 0.066 13.1 0.1 2.0 1 1 1 2 2 2 0 TFIIE alpha subunit DUF4423 PF14394.6 gi|240103954|ref|YP_002960263.1| - 0.013 15.2 0.1 0.029 14.1 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_Tnp_ISL3 PF13542.6 gi|240103954|ref|YP_002960263.1| - 0.015 14.7 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.6 gi|240103954|ref|YP_002960263.1| - 0.016 15.7 0.1 0.028 14.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FaeA PF04703.12 gi|240103954|ref|YP_002960263.1| - 0.018 15.4 0.1 0.03 14.7 0.1 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_12 PF08461.10 gi|240103954|ref|YP_002960263.1| - 0.023 14.6 0.0 0.049 13.6 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF2805 PF10985.8 gi|240103954|ref|YP_002960263.1| - 0.027 14.8 0.1 0.045 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2805) HTH_10 PF04967.12 gi|240103954|ref|YP_002960263.1| - 0.032 14.1 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Mga PF05043.13 gi|240103954|ref|YP_002960263.1| - 0.034 14.7 0.0 0.064 13.9 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain GerE PF00196.19 gi|240103954|ref|YP_002960263.1| - 0.038 13.5 0.1 0.066 12.8 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF2774 PF11242.8 gi|240103954|ref|YP_002960263.1| - 0.052 13.8 0.0 0.089 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) HTH_34 PF13601.6 gi|240103954|ref|YP_002960263.1| - 0.055 13.6 0.0 0.099 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.27 gi|240103954|ref|YP_002960263.1| - 0.066 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_50 PF18024.1 gi|240103954|ref|YP_002960263.1| - 0.099 12.3 0.0 0.23 11.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|240103954|ref|YP_002960263.1| - 0.11 12.5 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_9 PF08221.11 gi|240103954|ref|YP_002960263.1| - 0.12 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain RWP-RK PF02042.15 gi|240103954|ref|YP_002960263.1| - 0.14 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 RWP-RK domain tRNA_U5-meth_tr PF05958.11 gi|240103955|ref|YP_002960264.1| - 1e-23 84.0 0.0 2.3e-16 59.7 0.0 2.2 1 1 1 2 2 2 2 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|240103955|ref|YP_002960264.1| - 9e-10 38.4 0.0 1.5e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|240103955|ref|YP_002960264.1| - 2.2e-07 30.8 0.0 4e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|240103955|ref|YP_002960264.1| - 2.7e-05 24.0 0.0 5.7e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240103955|ref|YP_002960264.1| - 4.9e-05 23.2 0.0 8.5e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|240103955|ref|YP_002960264.1| - 7e-05 22.4 0.0 0.0001 21.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|240103955|ref|YP_002960264.1| - 8.8e-05 23.1 0.0 0.00022 21.9 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|240103955|ref|YP_002960264.1| - 0.00039 20.0 0.0 0.00074 19.1 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|240103955|ref|YP_002960264.1| - 0.0006 19.5 0.0 0.00096 18.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 TehB PF03848.14 gi|240103955|ref|YP_002960264.1| - 0.015 14.7 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_11 PF08241.12 gi|240103955|ref|YP_002960264.1| - 0.14 12.8 0.0 0.37 11.5 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain TrmB PF01978.19 gi|240103956|ref|YP_002960265.1| - 0.00087 19.1 0.1 0.001 18.9 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|240103956|ref|YP_002960265.1| - 0.0052 16.8 0.1 0.0077 16.3 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|240103956|ref|YP_002960265.1| - 0.016 15.5 0.0 0.019 15.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.19 gi|240103956|ref|YP_002960265.1| - 0.021 15.0 0.0 0.03 14.5 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Pribosyltran PF00156.27 gi|240103957|ref|YP_002960266.1| - 1.3e-17 63.8 0.8 1.6e-17 63.4 0.8 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|240103957|ref|YP_002960266.1| - 0.011 15.2 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PDZ PF00595.24 gi|240103957|ref|YP_002960266.1| - 0.058 13.8 0.1 0.16 12.3 0.0 1.8 2 0 0 2 2 2 0 PDZ domain Band_7 PF01145.25 gi|240103958|ref|YP_002960267.1| - 7.6e-40 136.8 6.3 1.1e-39 136.2 6.3 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|240103958|ref|YP_002960267.1| - 4.6e-05 23.2 1.9 0.00013 21.8 0.8 2.3 2 1 0 2 2 2 1 SPFH domain-Band 7 family NfeD PF01957.18 gi|240103959|ref|YP_002960268.1| - 2e-20 72.9 5.3 8.5e-20 70.9 5.3 2.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.16 gi|240103959|ref|YP_002960268.1| - 8.4e-06 25.0 0.2 1.3e-05 24.4 0.2 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|240103959|ref|YP_002960268.1| - 1.7e-05 24.8 0.3 2.8e-05 24.1 0.3 1.3 1 0 0 1 1 1 1 Clp protease Peripla_BP_6 PF13458.6 gi|240103959|ref|YP_002960268.1| - 0.044 13.4 0.1 0.062 13.0 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein Peptidase_S49 PF01343.18 gi|240103959|ref|YP_002960268.1| - 0.068 13.1 1.2 0.13 12.2 0.9 1.6 1 1 0 1 1 1 0 Peptidase family S49 LAM_C PF12544.8 gi|240103959|ref|YP_002960268.1| - 0.094 12.9 0.1 0.49 10.6 0.0 2.1 2 0 0 2 2 2 0 Lysine-2,3-aminomutase Peptidase_S49_N PF08496.10 gi|240103959|ref|YP_002960268.1| - 0.27 11.3 2.2 0.86 9.7 0.0 2.6 3 0 0 3 3 3 0 Peptidase family S49 N-terminal DUF2206 PF09971.9 gi|240103959|ref|YP_002960268.1| - 7.1 5.3 8.2 15 4.2 8.2 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) Nup35_RRM_2 PF14605.6 gi|240103960|ref|YP_002960269.1| - 0.0061 16.5 0.0 0.0093 15.9 0.0 1.3 1 0 0 1 1 1 1 Nup53/35/40-type RNA recognition motif DUF835 PF05763.12 gi|240103961|ref|YP_002960270.1| - 2.2e-22 79.2 0.0 2.9e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF835) MutL_C PF08676.11 gi|240103961|ref|YP_002960270.1| - 0.14 11.9 0.0 0.34 10.7 0.0 1.5 2 0 0 2 2 2 0 MutL C terminal dimerisation domain DUF5603 PF18231.1 gi|240103964|ref|YP_002960273.1| - 1.4e-48 163.6 3.5 2.8e-48 162.6 2.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5603) ParBc PF02195.18 gi|240103964|ref|YP_002960273.1| - 5.1e-09 36.3 0.0 1.4e-08 34.9 0.0 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|240103964|ref|YP_002960273.1| - 4.4e-06 25.8 0.9 0.02 13.7 0.0 2.9 2 1 1 3 3 3 2 Protein of unknown function (DUF1015) DUF763 PF05559.11 gi|240103965|ref|YP_002960274.1| - 2.3e-122 408.1 0.0 2.7e-122 407.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Rho_N PF07498.12 gi|240103965|ref|YP_002960274.1| - 0.00055 19.8 0.0 0.29 11.1 0.0 2.8 2 0 0 2 2 2 2 Rho termination factor, N-terminal domain HHH PF00633.23 gi|240103965|ref|YP_002960274.1| - 0.069 13.0 0.1 0.75 9.8 0.0 2.6 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF89 PF01937.19 gi|240103966|ref|YP_002960275.1| - 2e-56 191.5 0.0 2.2e-56 191.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Exonuc_VII_S PF02609.16 gi|240103966|ref|YP_002960275.1| - 0.25 11.4 1.9 2.7 8.1 0.2 2.6 2 0 0 2 2 2 0 Exonuclease VII small subunit DEAD PF00270.29 gi|240103967|ref|YP_002960276.1| - 6.2e-51 172.7 0.0 9.9e-51 172.0 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|240103967|ref|YP_002960276.1| - 2.5e-30 105.1 0.1 8.3e-29 100.2 0.1 2.8 4 0 0 4 4 4 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|240103967|ref|YP_002960276.1| - 1.3e-07 31.8 0.0 3.5e-07 30.4 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UTP25 PF06862.12 gi|240103967|ref|YP_002960276.1| - 0.12 11.1 0.1 1.8 7.3 0.0 2.5 3 0 0 3 3 3 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 CMS1 PF14617.6 gi|240103967|ref|YP_002960276.1| - 0.14 11.4 0.0 0.14 11.4 0.0 1.7 2 0 0 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit Microtub_bd PF16796.5 gi|240103967|ref|YP_002960276.1| - 0.16 11.9 0.1 25 4.8 0.0 2.5 2 1 1 3 3 3 0 Microtubule binding SPASM PF13186.6 gi|240103968|ref|YP_002960277.1| - 2.8e-17 63.0 0.7 2.8e-17 63.0 0.7 2.5 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|240103968|ref|YP_002960277.1| - 4.2e-15 56.5 0.1 9e-15 55.4 0.1 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|240103968|ref|YP_002960277.1| - 1.7e-07 31.6 0.1 1.4e-06 28.6 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|240103968|ref|YP_002960277.1| - 1.3e-06 28.5 0.0 2.9e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain ThiS PF02597.20 gi|240103969|ref|YP_002960278.1| - 2.7e-19 69.6 0.1 3e-19 69.4 0.1 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|240103969|ref|YP_002960278.1| - 0.038 14.3 0.1 0.039 14.3 0.1 1.3 1 1 0 1 1 1 0 Urm1 (Ubiquitin related modifier) AFOR_C PF01314.18 gi|240103970|ref|YP_002960279.1| - 2.5e-145 484.3 0.0 3.5e-145 483.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|240103970|ref|YP_002960279.1| - 1.2e-82 276.7 0.3 1.6e-82 276.2 0.3 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Nre_N PF04894.12 gi|240103971|ref|YP_002960280.1| - 1e-102 343.6 0.0 1.3e-102 343.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|240103971|ref|YP_002960280.1| - 2.8e-37 127.0 0.4 4.2e-37 126.4 0.4 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Phosphodiest PF01663.22 gi|240103972|ref|YP_002960281.1| - 1.1e-47 163.3 0.1 1.3e-47 163.1 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|240103972|ref|YP_002960281.1| - 6.2e-08 32.4 0.0 0.0074 15.7 0.0 2.4 1 1 0 2 2 2 2 Sulfatase Metalloenzyme PF01676.18 gi|240103972|ref|YP_002960281.1| - 7.7e-08 32.0 0.0 4.6e-07 29.5 0.0 2.1 2 0 0 2 2 2 1 Metalloenzyme superfamily SH3_2 PF07653.17 gi|240103973|ref|YP_002960282.1| - 0.0076 15.9 0.1 0.031 14.0 0.0 2.0 2 0 0 2 2 2 1 Variant SH3 domain 5_nucleotid_C PF02872.18 gi|240103973|ref|YP_002960282.1| - 0.06 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 5'-nucleotidase, C-terminal domain PIN PF01850.21 gi|240103975|ref|YP_002960284.1| - 3.8e-21 75.8 0.5 4.4e-21 75.6 0.5 1.0 1 0 0 1 1 1 1 PIN domain Resolvase PF00239.21 gi|240103975|ref|YP_002960284.1| - 0.075 13.1 0.1 0.087 12.9 0.1 1.3 1 0 0 1 1 1 0 Resolvase, N terminal domain MazE_antitoxin PF04014.18 gi|240103976|ref|YP_002960285.1| - 2.9e-05 23.9 0.0 4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|240103976|ref|YP_002960285.1| - 4.6e-05 23.3 0.0 5.7e-05 23.0 0.0 1.3 1 1 0 1 1 1 1 MraZ protein, putative antitoxin-like Ribosomal_S7 PF00177.21 gi|240103977|ref|YP_002960286.1| - 3.9e-38 130.4 2.9 5.5e-38 129.9 2.9 1.2 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.25 gi|240103978|ref|YP_002960287.1| - 6.5e-51 170.8 1.5 8.2e-51 170.4 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|240103979|ref|YP_002960288.1| - 2.5e-21 75.3 3.8 1.8e-17 62.9 0.5 2.1 1 1 1 2 2 2 2 KH domain KH_4 PF13083.6 gi|240103979|ref|YP_002960288.1| - 4.5e-08 32.8 0.9 0.00014 21.7 0.1 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|240103979|ref|YP_002960288.1| - 5.1e-08 32.9 1.7 6.8e-07 29.3 0.3 2.4 2 1 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.29 gi|240103979|ref|YP_002960288.1| - 0.00043 20.1 5.6 0.04 13.7 0.6 2.6 1 1 1 2 2 2 2 KH domain Ribosomal_L7Ae PF01248.26 gi|240103980|ref|YP_002960289.1| - 2.2e-19 69.0 0.0 2.4e-19 68.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 gi|240103981|ref|YP_002960290.1| - 3.2e-56 190.7 0.3 4.3e-56 190.3 0.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_1 PF04997.12 gi|240103982|ref|YP_002960291.1| - 1.7e-108 362.7 0.0 2.4e-108 362.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|240103982|ref|YP_002960291.1| - 1.3e-73 246.7 0.0 2.1e-73 246.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|240103982|ref|YP_002960291.1| - 6.3e-38 130.2 0.0 1.2e-37 129.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|240103982|ref|YP_002960291.1| - 4.1e-32 110.3 0.0 9.5e-32 109.2 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|240103982|ref|YP_002960291.1| - 3.6e-29 102.0 0.0 7.5e-29 101.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-RING_7 PF02591.15 gi|240103982|ref|YP_002960291.1| - 0.28 11.4 5.8 20 5.5 0.1 3.8 4 0 0 4 4 4 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|240103982|ref|YP_002960291.1| - 0.76 9.3 2.8 1.3 8.5 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|240103982|ref|YP_002960291.1| - 6.1 6.9 7.2 1.2 9.1 0.1 3.2 3 0 0 3 3 3 0 Nudix N-terminal RNA_pol_Rpb2_6 PF00562.28 gi|240103983|ref|YP_002960292.1| - 2.1e-132 441.9 0.0 2.9e-132 441.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|240103983|ref|YP_002960292.1| - 7e-55 185.7 0.0 1.1e-54 185.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|240103983|ref|YP_002960292.1| - 3.2e-40 137.8 0.1 6.2e-40 136.9 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|240103983|ref|YP_002960292.1| - 2.2e-31 108.1 0.2 4.4e-31 107.1 0.2 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|240103983|ref|YP_002960292.1| - 6.9e-30 103.0 0.1 1.4e-29 102.1 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|240103983|ref|YP_002960292.1| - 1.7e-20 73.0 0.8 3.9e-20 71.9 0.8 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|240103983|ref|YP_002960292.1| - 4.6e-09 36.7 0.3 1.3e-08 35.2 0.3 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Auto_anti-p27 PF06677.12 gi|240103983|ref|YP_002960292.1| - 0.0023 18.1 1.2 0.0045 17.1 1.2 1.5 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NOB1_Zn_bind PF08772.11 gi|240103983|ref|YP_002960292.1| - 0.028 14.6 1.2 0.039 14.1 0.1 1.8 2 0 0 2 2 1 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.12 gi|240103983|ref|YP_002960292.1| - 0.03 13.8 3.0 0.12 11.9 2.8 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding RecR PF02132.15 gi|240103983|ref|YP_002960292.1| - 0.18 11.4 0.8 0.34 10.5 0.8 1.4 1 0 0 1 1 1 0 RecR protein OrfB_Zn_ribbon PF07282.11 gi|240103983|ref|YP_002960292.1| - 0.37 10.7 1.9 0.81 9.7 1.9 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NRDD PF13597.6 gi|240103983|ref|YP_002960292.1| - 0.44 9.3 1.3 3.6 6.3 1.1 2.0 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-FPG_IleRS PF06827.14 gi|240103983|ref|YP_002960292.1| - 0.95 9.4 2.7 2.2 8.2 2.7 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS RNA_pol_Rpb5_C PF01191.19 gi|240103984|ref|YP_002960293.1| - 1.9e-30 104.5 0.1 2.2e-30 104.3 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF835 PF05763.12 gi|240103985|ref|YP_002960294.1| - 1e-21 77.1 0.0 1.2e-21 76.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Glyoxalase_4 PF13669.6 gi|240103986|ref|YP_002960295.1| - 9.6e-25 87.0 0.0 1.1e-24 86.8 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|240103986|ref|YP_002960295.1| - 4.2e-12 46.4 0.0 4.4e-12 46.3 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|240103986|ref|YP_002960295.1| - 3.9e-11 43.4 0.0 4.3e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain DUF1338 PF07063.13 gi|240103986|ref|YP_002960295.1| - 0.23 10.6 0.0 2.6 7.1 0.0 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF1338) Osmo_CC PF08946.10 gi|240103986|ref|YP_002960295.1| - 0.43 10.9 2.9 0.49 10.7 0.1 2.5 2 1 0 2 2 2 0 Osmosensory transporter coiled coil MeaB PF03308.16 gi|240103987|ref|YP_002960296.1| - 2.8e-102 341.3 1.4 3.4e-102 341.0 1.4 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|240103987|ref|YP_002960296.1| - 7.9e-08 32.1 1.0 5.3e-07 29.4 1.0 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|240103987|ref|YP_002960296.1| - 3.5e-06 26.8 0.1 1.3e-05 25.0 0.1 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain GTP_EFTU PF00009.27 gi|240103987|ref|YP_002960296.1| - 6.1e-06 25.9 0.0 2.4e-05 23.9 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_22 PF13401.6 gi|240103987|ref|YP_002960296.1| - 1.5e-05 25.3 0.1 9.4e-05 22.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|240103987|ref|YP_002960296.1| - 2.1e-05 24.5 0.1 7.3e-05 22.7 0.1 1.9 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|240103987|ref|YP_002960296.1| - 2.7e-05 24.0 0.0 7.4e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|240103987|ref|YP_002960296.1| - 4e-05 23.5 0.0 9.4e-05 22.3 0.0 1.6 2 0 0 2 2 1 1 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|240103987|ref|YP_002960296.1| - 0.00011 22.0 0.1 0.00045 20.1 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|240103987|ref|YP_002960296.1| - 0.00022 21.7 0.2 0.00056 20.4 0.0 1.7 2 0 0 2 2 1 1 ABC transporter KAP_NTPase PF07693.14 gi|240103987|ref|YP_002960296.1| - 0.00025 20.4 0.0 0.00052 19.4 0.0 1.3 1 1 0 1 1 1 1 KAP family P-loop domain AAA_29 PF13555.6 gi|240103987|ref|YP_002960296.1| - 0.00028 20.6 0.0 0.00055 19.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|240103987|ref|YP_002960296.1| - 0.00068 20.2 0.3 0.0038 17.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|240103987|ref|YP_002960296.1| - 0.00092 19.6 0.2 0.0027 18.1 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|240103987|ref|YP_002960296.1| - 0.0031 17.6 1.3 0.02 15.0 0.3 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase CbiA PF01656.23 gi|240103987|ref|YP_002960296.1| - 0.0031 17.5 0.0 0.0066 16.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 gi|240103987|ref|YP_002960296.1| - 0.0054 16.7 0.1 0.013 15.4 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA_19 PF13245.6 gi|240103987|ref|YP_002960296.1| - 0.0066 16.8 0.5 0.021 15.2 0.1 2.0 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.9 gi|240103987|ref|YP_002960296.1| - 0.0072 15.3 0.0 0.013 14.5 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain ATPase_2 PF01637.18 gi|240103987|ref|YP_002960296.1| - 0.0075 16.2 0.2 0.018 15.0 0.0 1.7 2 0 0 2 2 1 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|240103987|ref|YP_002960296.1| - 0.0097 16.1 1.3 0.051 13.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|240103987|ref|YP_002960296.1| - 0.022 14.0 0.0 0.046 12.9 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|240103987|ref|YP_002960296.1| - 0.024 15.2 0.3 0.086 13.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|240103987|ref|YP_002960296.1| - 0.029 13.8 0.0 0.07 12.6 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|240103987|ref|YP_002960296.1| - 0.044 14.0 0.1 0.15 12.3 0.1 1.9 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|240103987|ref|YP_002960296.1| - 0.05 12.7 0.0 0.099 11.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|240103987|ref|YP_002960296.1| - 0.052 13.1 0.1 0.6 9.7 0.0 2.4 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|240103987|ref|YP_002960296.1| - 0.053 13.2 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|240103987|ref|YP_002960296.1| - 0.058 13.8 2.5 0.095 13.1 0.1 2.4 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|240103987|ref|YP_002960296.1| - 0.061 13.7 0.0 0.3 11.5 0.0 2.0 2 0 0 2 2 2 0 RNA helicase DAP3 PF10236.9 gi|240103987|ref|YP_002960296.1| - 0.078 12.1 0.0 0.17 11.1 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_14 PF13173.6 gi|240103987|ref|YP_002960296.1| - 0.089 12.8 0.0 0.22 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|240103987|ref|YP_002960296.1| - 0.1 12.5 0.0 0.36 10.7 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase Viral_helicase1 PF01443.18 gi|240103987|ref|YP_002960296.1| - 0.11 12.3 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PIF1 PF05970.14 gi|240103987|ref|YP_002960296.1| - 0.14 11.3 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA PF00004.29 gi|240103987|ref|YP_002960296.1| - 0.15 12.5 0.7 2 8.9 0.1 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) B12-binding PF02310.19 gi|240103988|ref|YP_002960297.1| - 6.4e-23 81.1 0.5 7.7e-23 80.8 0.5 1.1 1 0 0 1 1 1 1 B12 binding domain DUF1611_N PF17396.2 gi|240103988|ref|YP_002960297.1| - 0.0066 16.7 0.1 0.012 15.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_N) Rossmann-like domain MoCF_biosynth PF00994.24 gi|240103988|ref|YP_002960297.1| - 0.007 16.0 0.4 0.057 13.1 0.0 2.1 1 1 1 2 2 2 1 Probable molybdopterin binding domain Lar_N PF09861.9 gi|240103988|ref|YP_002960297.1| - 0.061 12.5 0.0 0.071 12.3 0.0 1.2 1 1 0 1 1 1 0 Lactate racemase N-terminal domain LytR_C PF13399.6 gi|240103988|ref|YP_002960297.1| - 0.075 14.0 0.0 0.32 12.0 0.0 2.0 1 1 1 2 2 2 0 LytR cell envelope-related transcriptional attenuator PHP PF02811.19 gi|240103989|ref|YP_002960298.1| - 1.9e-07 31.6 0.0 2.1e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|240103989|ref|YP_002960298.1| - 8.5e-05 22.2 0.0 0.00038 20.2 0.0 2.1 2 0 0 2 2 2 1 PHP-associated Maf PF02545.14 gi|240103990|ref|YP_002960299.1| - 1.4e-56 190.9 0.0 1.7e-56 190.7 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein T2SSE PF00437.20 gi|240103992|ref|YP_002960301.1| - 6.8e-10 38.5 0.0 1.3e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|240103992|ref|YP_002960301.1| - 7e-08 33.0 0.5 2.6e-07 31.2 0.1 2.2 2 0 0 2 2 2 1 PIN domain PIN_9 PF18477.1 gi|240103992|ref|YP_002960301.1| - 0.00037 20.8 2.4 0.023 15.0 2.4 3.1 1 1 0 1 1 1 1 PIN like domain KH_1 PF00013.29 gi|240103992|ref|YP_002960301.1| - 0.00049 19.9 0.5 0.0012 18.6 0.5 1.7 1 0 0 1 1 1 1 KH domain AAA_18 PF13238.6 gi|240103992|ref|YP_002960301.1| - 0.0015 19.1 0.1 0.018 15.6 0.0 2.8 3 0 0 3 3 3 1 AAA domain KH_2 PF07650.17 gi|240103992|ref|YP_002960301.1| - 0.0023 17.7 5.8 0.0044 16.8 0.7 3.4 2 1 1 3 3 3 1 KH domain Thymidylate_kin PF02223.17 gi|240103992|ref|YP_002960301.1| - 0.0029 17.3 0.1 0.012 15.3 0.0 2.1 1 1 1 2 2 2 1 Thymidylate kinase PIN_4 PF13638.6 gi|240103992|ref|YP_002960301.1| - 0.005 17.1 0.1 0.012 15.9 0.1 1.7 1 1 0 1 1 1 1 PIN domain AAA_25 PF13481.6 gi|240103992|ref|YP_002960301.1| - 0.015 14.9 0.1 0.072 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|240103992|ref|YP_002960301.1| - 0.017 14.8 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|240103992|ref|YP_002960301.1| - 0.02 15.3 0.0 0.1 13.0 0.0 2.2 3 0 0 3 3 3 0 AAA ATPase domain AAA_22 PF13401.6 gi|240103992|ref|YP_002960301.1| - 0.023 15.0 0.0 0.17 12.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|240103992|ref|YP_002960301.1| - 0.026 14.5 0.0 0.066 13.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DnaB_C PF03796.15 gi|240103992|ref|YP_002960301.1| - 0.027 13.8 0.0 0.12 11.6 0.0 2.1 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_28 PF13521.6 gi|240103992|ref|YP_002960301.1| - 0.051 13.8 0.2 0.15 12.3 0.0 1.9 2 0 0 2 2 1 0 AAA domain RuvB_N PF05496.12 gi|240103992|ref|YP_002960301.1| - 0.053 13.3 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|240103992|ref|YP_002960301.1| - 0.058 13.3 0.1 0.13 12.1 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|240103992|ref|YP_002960301.1| - 0.062 13.3 0.1 0.45 10.5 0.0 2.5 3 0 0 3 3 2 0 AAA domain AAA PF00004.29 gi|240103992|ref|YP_002960301.1| - 0.075 13.5 0.0 0.25 11.8 0.0 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|240103992|ref|YP_002960301.1| - 0.11 12.6 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain TsaE PF02367.17 gi|240103992|ref|YP_002960301.1| - 0.13 12.3 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|240103992|ref|YP_002960301.1| - 0.13 12.7 0.3 11 6.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|240103992|ref|YP_002960301.1| - 0.14 12.6 0.0 0.27 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|240103992|ref|YP_002960301.1| - 0.16 12.1 0.2 1 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|240103992|ref|YP_002960301.1| - 0.18 11.8 0.4 0.7 9.9 0.1 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_31 PF13614.6 gi|240103993|ref|YP_002960302.1| - 3.4e-30 105.3 0.5 5.3e-30 104.6 0.5 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|240103993|ref|YP_002960302.1| - 5.4e-23 81.4 0.1 8.4e-23 80.8 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|240103993|ref|YP_002960302.1| - 2.5e-22 79.5 4.6 3.6e-21 75.8 4.6 2.4 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|240103993|ref|YP_002960302.1| - 2.1e-17 63.4 0.4 1.5e-07 31.1 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|240103993|ref|YP_002960302.1| - 9e-15 54.8 0.0 2.5e-14 53.4 0.0 1.6 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|240103993|ref|YP_002960302.1| - 3.3e-08 33.1 0.1 1.2e-07 31.3 0.1 1.8 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|240103993|ref|YP_002960302.1| - 2e-06 27.2 1.0 3.9e-05 23.0 0.3 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|240103993|ref|YP_002960302.1| - 0.00071 19.4 0.0 0.00071 19.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|240103993|ref|YP_002960302.1| - 0.0035 17.1 0.0 0.0043 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|240103993|ref|YP_002960302.1| - 0.0089 15.7 1.7 0.031 13.9 1.3 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain VirC1 PF07015.11 gi|240103993|ref|YP_002960302.1| - 0.016 14.5 0.6 0.027 13.7 0.6 1.3 1 0 0 1 1 1 0 VirC1 protein FTHFS PF01268.19 gi|240103993|ref|YP_002960302.1| - 0.098 10.8 0.2 0.15 10.2 0.2 1.4 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase AAA_25 PF13481.6 gi|240103993|ref|YP_002960302.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|240103993|ref|YP_002960302.1| - 0.19 11.4 0.7 0.4 10.4 0.7 1.6 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|240103994|ref|YP_002960303.1| - 7.5e-56 189.6 0.0 8.5e-56 189.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|240103994|ref|YP_002960303.1| - 2.6e-05 23.8 0.0 0.055 13.0 0.0 2.9 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain CbiA PF01656.23 gi|240103994|ref|YP_002960303.1| - 6.4e-05 23.0 0.0 8.8e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 gi|240103994|ref|YP_002960303.1| - 0.00012 21.8 0.1 0.00024 20.8 0.1 1.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 gi|240103994|ref|YP_002960303.1| - 0.00075 19.3 0.0 0.002 17.9 0.0 1.6 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|240103994|ref|YP_002960303.1| - 0.00075 19.4 0.1 0.24 11.3 0.0 3.1 4 0 0 4 4 3 1 RsgA GTPase MeaB PF03308.16 gi|240103994|ref|YP_002960303.1| - 0.0016 17.5 0.0 0.042 12.8 0.0 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|240103994|ref|YP_002960303.1| - 0.0048 17.3 0.0 0.0062 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain CLP1_P PF16575.5 gi|240103994|ref|YP_002960303.1| - 0.0056 16.5 0.0 0.071 12.9 0.0 2.0 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|240103994|ref|YP_002960303.1| - 0.018 15.0 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase NTPase_1 PF03266.15 gi|240103994|ref|YP_002960303.1| - 0.019 14.9 0.0 0.041 13.8 0.0 1.4 1 1 0 1 1 1 0 NTPase AAA_24 PF13479.6 gi|240103994|ref|YP_002960303.1| - 0.03 14.0 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|240103994|ref|YP_002960303.1| - 0.031 13.7 0.0 0.045 13.2 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 cobW PF02492.19 gi|240103994|ref|YP_002960303.1| - 0.035 13.7 0.3 2.4 7.7 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|240103994|ref|YP_002960303.1| - 0.043 13.5 0.1 0.063 13.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain MipZ PF09140.11 gi|240103994|ref|YP_002960303.1| - 0.073 12.3 0.0 0.16 11.2 0.0 1.6 1 1 0 1 1 1 0 ATPase MipZ MMR_HSR1_Xtn PF16897.5 gi|240103994|ref|YP_002960303.1| - 0.08 13.0 0.0 0.93 9.5 0.0 2.2 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain MobB PF03205.14 gi|240103994|ref|YP_002960303.1| - 0.091 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArsA_ATPase PF02374.15 gi|240103994|ref|YP_002960303.1| - 0.098 11.8 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase Septin PF00735.18 gi|240103994|ref|YP_002960303.1| - 0.22 10.8 0.3 1 8.6 0.0 2.1 2 1 1 3 3 3 0 Septin Asn_synthase PF00733.21 gi|240103995|ref|YP_002960304.1| - 2e-55 188.9 0.2 6.7e-34 118.1 0.1 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_7 PF13537.6 gi|240103995|ref|YP_002960304.1| - 1.8e-24 86.0 0.0 3.3e-24 85.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|240103995|ref|YP_002960304.1| - 5.9e-20 71.8 0.0 1.3e-19 70.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain QueC PF06508.13 gi|240103995|ref|YP_002960304.1| - 0.075 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC SNAP PF14938.6 gi|240103996|ref|YP_002960305.1| - 3.1e-05 23.5 8.5 0.0032 16.9 3.3 2.4 2 0 0 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_12 PF13424.6 gi|240103996|ref|YP_002960305.1| - 6.2e-05 23.2 16.7 0.15 12.4 0.1 4.8 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|240103996|ref|YP_002960305.1| - 7.7e-05 22.5 22.1 0.038 14.1 1.1 5.6 6 1 1 7 7 6 3 Tetratricopeptide repeat RPN7 PF10602.9 gi|240103996|ref|YP_002960305.1| - 0.00016 21.5 5.6 0.03 14.0 0.0 3.1 3 0 0 3 3 3 2 26S proteasome subunit RPN7 TPR_14 PF13428.6 gi|240103996|ref|YP_002960305.1| - 0.00056 20.5 12.9 0.76 10.8 0.1 5.5 4 2 1 5 5 5 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|240103996|ref|YP_002960305.1| - 0.00099 18.9 3.9 1.1 9.3 0.1 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|240103996|ref|YP_002960305.1| - 0.0039 17.8 16.7 0.24 12.1 0.1 5.2 4 1 0 4 4 4 2 Tetratricopeptide repeat MIT PF04212.18 gi|240103996|ref|YP_002960305.1| - 0.017 15.1 10.4 1.5 8.9 0.1 3.9 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain DUF627 PF04781.12 gi|240103996|ref|YP_002960305.1| - 0.06 13.4 0.2 20 5.3 0.0 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF627) TPR_7 PF13176.6 gi|240103996|ref|YP_002960305.1| - 0.14 12.3 7.7 4.2 7.6 0.1 4.1 4 0 0 4 4 3 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|240103996|ref|YP_002960305.1| - 0.51 10.1 9.2 4.8 7.0 0.2 4.1 4 0 0 4 4 4 0 TPR repeat NSF PF02071.20 gi|240103996|ref|YP_002960305.1| - 3.4 8.8 9.5 57 5.2 0.1 5.3 4 0 0 4 4 4 0 Aromatic-di-Alanine (AdAR) repeat TPR_1 PF00515.28 gi|240103996|ref|YP_002960305.1| - 7.4 6.6 20.6 0.76 9.7 0.1 5.2 6 1 1 7 7 7 0 Tetratricopeptide repeat Sua5_yciO_yrdC PF01300.18 gi|240103997|ref|YP_002960306.1| - 1.3e-60 204.0 0.0 3.9e-60 202.4 0.0 1.7 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.13 gi|240103997|ref|YP_002960306.1| - 8.2e-35 120.3 0.1 1.2e-34 119.8 0.1 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding NTP_transf_2 PF01909.23 gi|240103999|ref|YP_002960308.1| - 1.8e-07 31.4 0.2 5.9e-07 29.7 0.2 2.1 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|240103999|ref|YP_002960308.1| - 3.5e-05 23.8 0.0 8e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF4269 PF14091.6 gi|240103999|ref|YP_002960308.1| - 0.0018 18.5 0.0 0.0032 17.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4269) tRNA-synt_2b PF00587.25 gi|240104000|ref|YP_002960309.1| - 2.4e-38 131.9 0.0 4.1e-38 131.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|240104000|ref|YP_002960309.1| - 8.4e-28 96.8 10.2 1.5e-27 95.9 10.2 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Syntaxin_2 PF14523.6 gi|240104000|ref|YP_002960309.1| - 0.016 15.5 0.3 0.034 14.5 0.3 1.5 1 0 0 1 1 1 0 Syntaxin-like protein DUF2408 PF10303.9 gi|240104000|ref|YP_002960309.1| - 0.023 15.3 1.5 0.049 14.2 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) bZIP_1 PF00170.21 gi|240104000|ref|YP_002960309.1| - 0.055 13.6 5.5 0.13 12.4 5.5 1.6 1 0 0 1 1 1 0 bZIP transcription factor GAS PF13851.6 gi|240104000|ref|YP_002960309.1| - 0.059 12.7 6.9 0.11 11.8 6.9 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.12 gi|240104000|ref|YP_002960309.1| - 0.085 12.9 5.3 0.16 12.1 5.3 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein CM_2 PF01817.21 gi|240104000|ref|YP_002960309.1| - 0.11 12.9 2.5 0.32 11.4 2.5 1.8 1 0 0 1 1 1 0 Chorismate mutase type II DUF4509 PF14970.6 gi|240104000|ref|YP_002960309.1| - 0.14 12.0 5.7 0.26 11.2 3.2 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4509) FapA PF03961.13 gi|240104000|ref|YP_002960309.1| - 0.14 10.7 2.7 0.21 10.2 2.7 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A BRE1 PF08647.11 gi|240104000|ref|YP_002960309.1| - 0.15 12.2 5.8 0.31 11.1 5.8 1.5 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase BLOC1_2 PF10046.9 gi|240104000|ref|YP_002960309.1| - 0.17 12.2 2.5 0.41 11.0 2.5 1.6 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 VSG_B PF13206.6 gi|240104000|ref|YP_002960309.1| - 0.24 10.6 2.8 0.37 10.0 2.8 1.2 1 0 0 1 1 1 0 Trypanosomal VSG domain FlgN PF05130.12 gi|240104000|ref|YP_002960309.1| - 0.58 10.7 3.7 1.4 9.4 3.7 1.6 1 0 0 1 1 1 0 FlgN protein APG6_N PF17675.1 gi|240104000|ref|YP_002960309.1| - 1.8 9.1 11.7 8.9 6.9 2.9 2.5 1 1 1 2 2 2 0 Apg6 coiled-coil region Cep57_CLD_2 PF14197.6 gi|240104000|ref|YP_002960309.1| - 2.8 8.1 5.9 1.8e+02 2.3 5.9 2.4 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 TSP_NTD PF17804.1 gi|240104000|ref|YP_002960309.1| - 9.2 6.5 7.7 2.9 8.1 4.8 1.6 2 0 0 2 2 2 0 Tail specific protease N-terminal domain MoeA_N PF03453.17 gi|240104001|ref|YP_002960310.1| - 5.8e-44 149.6 0.1 1.8e-43 148.0 0.0 1.8 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|240104001|ref|YP_002960310.1| - 3.7e-25 88.3 0.0 5.6e-25 87.7 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|240104001|ref|YP_002960310.1| - 4e-19 68.6 0.0 1.3e-18 66.9 0.0 1.9 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) HTH_24 PF13412.6 gi|240104002|ref|YP_002960311.1| - 5.8e-19 67.4 1.5 1e-18 66.6 0.7 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|240104002|ref|YP_002960311.1| - 9.7e-18 63.9 0.0 1.6e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|240104002|ref|YP_002960311.1| - 3.2e-17 62.1 0.3 6.4e-17 61.1 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|240104002|ref|YP_002960311.1| - 5.2e-08 32.5 0.1 1.1e-07 31.5 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|240104002|ref|YP_002960311.1| - 6.2e-08 32.5 0.1 2.1e-07 30.8 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|240104002|ref|YP_002960311.1| - 8.1e-07 29.0 0.0 1.4e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|240104002|ref|YP_002960311.1| - 1.2e-06 28.5 0.2 2.4e-06 27.5 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|240104002|ref|YP_002960311.1| - 1.1e-05 24.9 0.0 2.3e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|240104002|ref|YP_002960311.1| - 1.8e-05 24.5 0.0 3.1e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|240104002|ref|YP_002960311.1| - 2.6e-05 24.0 0.2 8.4e-05 22.4 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|240104002|ref|YP_002960311.1| - 2.9e-05 23.9 0.1 7.3e-05 22.6 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|240104002|ref|YP_002960311.1| - 5.3e-05 22.9 0.1 5.3e-05 22.9 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|240104002|ref|YP_002960311.1| - 0.00023 21.0 0.0 0.00043 20.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|240104002|ref|YP_002960311.1| - 0.0011 18.7 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|240104002|ref|YP_002960311.1| - 0.0014 18.3 0.0 0.0039 16.9 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|240104002|ref|YP_002960311.1| - 0.0018 18.2 0.0 0.013 15.5 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_12 PF08461.10 gi|240104002|ref|YP_002960311.1| - 0.002 18.0 0.2 0.0055 16.6 0.2 1.8 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TetR_N PF00440.23 gi|240104002|ref|YP_002960311.1| - 0.006 16.4 0.0 0.019 14.7 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family Fe_dep_repress PF01325.19 gi|240104002|ref|YP_002960311.1| - 0.006 16.8 0.0 0.014 15.6 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.6 gi|240104002|ref|YP_002960311.1| - 0.0099 15.7 0.2 0.017 14.9 0.2 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_41 PF14502.6 gi|240104002|ref|YP_002960311.1| - 0.012 15.3 0.1 0.074 12.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|240104002|ref|YP_002960311.1| - 0.014 15.4 0.1 0.033 14.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix GYD PF08734.11 gi|240104002|ref|YP_002960311.1| - 0.017 15.1 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 GYD domain HTH_Tnp_ISL3 PF13542.6 gi|240104002|ref|YP_002960311.1| - 0.02 14.3 0.0 0.04 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_34 PF13601.6 gi|240104002|ref|YP_002960311.1| - 0.023 14.9 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4 PF04545.16 gi|240104002|ref|YP_002960311.1| - 0.023 14.2 0.1 0.048 13.2 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 TnsD PF15978.5 gi|240104002|ref|YP_002960311.1| - 0.037 13.0 0.1 0.055 12.4 0.1 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D CENP-B_N PF04218.13 gi|240104002|ref|YP_002960311.1| - 0.044 13.4 0.1 0.11 12.1 0.1 1.7 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Mga PF05043.13 gi|240104002|ref|YP_002960311.1| - 0.044 14.4 0.0 0.079 13.6 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain FUR PF01475.19 gi|240104002|ref|YP_002960311.1| - 0.044 13.9 0.1 0.12 12.5 0.0 1.8 2 0 0 2 2 1 0 Ferric uptake regulator family Trp_repressor PF01371.19 gi|240104002|ref|YP_002960311.1| - 0.044 13.9 0.1 0.25 11.5 0.0 2.0 2 0 0 2 2 2 0 Trp repressor protein HTH_40 PF14493.6 gi|240104002|ref|YP_002960311.1| - 0.068 13.6 0.1 0.16 12.4 0.1 1.8 1 1 1 2 2 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|240104002|ref|YP_002960311.1| - 0.069 13.2 0.4 0.24 11.5 0.1 2.1 2 1 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_Mga PF08280.11 gi|240104002|ref|YP_002960311.1| - 0.072 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain RuvB_C PF05491.13 gi|240104002|ref|YP_002960311.1| - 0.079 12.8 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_32 PF13565.6 gi|240104002|ref|YP_002960311.1| - 0.1 13.2 0.0 0.22 12.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain SANTA PF09133.10 gi|240104003|ref|YP_002960312.1| - 0.15 12.5 0.0 0.2 12.2 0.0 1.2 1 0 0 1 1 1 0 SANTA (SANT Associated) Pribosyltran PF00156.27 gi|240104004|ref|YP_002960313.1| - 5.1e-14 52.1 0.1 7.5e-14 51.5 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|240104004|ref|YP_002960313.1| - 1.1e-05 25.4 0.2 2.5e-05 24.2 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix CxxCxxCC PF03692.15 gi|240104005|ref|YP_002960314.1| - 1.9e-18 66.9 1.2 2.5e-18 66.5 1.2 1.1 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|240104005|ref|YP_002960314.1| - 0.016 15.0 2.1 1.5 8.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3109) SapC PF07277.11 gi|240104005|ref|YP_002960314.1| - 0.25 10.9 0.0 0.34 10.4 0.0 1.2 1 0 0 1 1 1 0 SapC AsnC_trans_reg PF01037.21 gi|240104006|ref|YP_002960315.1| - 7.8e-17 61.0 0.4 9e-17 60.8 0.4 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GARS_N PF02844.15 gi|240104006|ref|YP_002960315.1| - 0.068 14.0 0.0 0.07 13.9 0.0 1.1 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain HHA PF05321.11 gi|240104006|ref|YP_002960315.1| - 0.075 13.4 1.6 0.51 10.7 0.1 2.3 1 1 0 2 2 2 0 Haemolysin expression modulating protein NapD PF03927.13 gi|240104006|ref|YP_002960315.1| - 0.086 12.9 0.1 0.17 11.9 0.1 1.6 1 1 0 1 1 1 0 NapD protein SRP54 PF00448.22 gi|240104007|ref|YP_002960316.1| - 5.5e-77 257.8 0.0 8.7e-77 257.2 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|240104007|ref|YP_002960316.1| - 6.2e-35 119.8 1.0 4.5e-34 117.0 0.9 2.3 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|240104007|ref|YP_002960316.1| - 7e-21 74.2 3.9 7.3e-21 74.2 0.5 2.6 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|240104007|ref|YP_002960316.1| - 5e-07 29.8 0.0 1.3e-06 28.5 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|240104007|ref|YP_002960316.1| - 1.5e-05 24.2 0.2 0.0013 17.8 0.0 2.4 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|240104007|ref|YP_002960316.1| - 4.6e-05 22.8 0.1 0.0002 20.7 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin MobB PF03205.14 gi|240104007|ref|YP_002960316.1| - 5e-05 23.2 0.3 0.00015 21.7 0.3 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|240104007|ref|YP_002960316.1| - 0.00024 21.4 0.3 0.0012 19.2 0.0 2.3 3 0 0 3 3 1 1 AAA domain AAA_17 PF13207.6 gi|240104007|ref|YP_002960316.1| - 0.00025 21.5 3.0 0.00041 20.8 0.7 2.7 2 1 0 2 2 1 1 AAA domain Glyco_transf_4 PF13439.6 gi|240104007|ref|YP_002960316.1| - 0.00034 20.6 0.1 0.0024 17.9 0.0 2.3 2 0 0 2 2 2 1 Glycosyltransferase Family 4 NTPase_1 PF03266.15 gi|240104007|ref|YP_002960316.1| - 0.00036 20.5 1.9 0.0021 18.0 0.1 2.4 2 0 0 2 2 2 1 NTPase AAA_33 PF13671.6 gi|240104007|ref|YP_002960316.1| - 0.00059 20.0 0.0 0.0018 18.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|240104007|ref|YP_002960316.1| - 0.00094 19.2 0.3 0.0064 16.6 0.1 2.5 3 1 0 3 3 2 1 50S ribosome-binding GTPase cobW PF02492.19 gi|240104007|ref|YP_002960316.1| - 0.00097 18.8 2.5 0.18 11.4 2.5 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|240104007|ref|YP_002960316.1| - 0.0013 19.1 0.1 0.0049 17.3 0.0 2.0 1 1 1 2 2 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|240104007|ref|YP_002960316.1| - 0.0015 18.3 1.3 0.0026 17.5 0.2 2.1 2 1 0 2 2 1 1 AAA domain ATP_bind_1 PF03029.17 gi|240104007|ref|YP_002960316.1| - 0.002 18.0 0.3 0.0054 16.5 0.1 1.9 2 1 0 2 2 1 1 Conserved hypothetical ATP binding protein IMPDH PF00478.25 gi|240104007|ref|YP_002960316.1| - 0.0022 17.0 0.4 0.0041 16.2 0.4 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain ParA PF10609.9 gi|240104007|ref|YP_002960316.1| - 0.0042 16.6 0.0 0.0093 15.4 0.0 1.6 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase LpxK PF02606.14 gi|240104007|ref|YP_002960316.1| - 0.0046 16.1 0.7 0.013 14.6 0.4 1.9 2 0 0 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_31 PF13614.6 gi|240104007|ref|YP_002960316.1| - 0.0052 16.7 0.2 0.032 14.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain SRPRB PF09439.10 gi|240104007|ref|YP_002960316.1| - 0.0053 16.2 0.4 2.8 7.3 0.0 2.5 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit ResIII PF04851.15 gi|240104007|ref|YP_002960316.1| - 0.0056 16.7 1.4 0.09 12.8 0.1 2.7 2 1 1 3 3 3 1 Type III restriction enzyme, res subunit AAA_18 PF13238.6 gi|240104007|ref|YP_002960316.1| - 0.0059 17.1 0.2 0.056 14.0 0.2 2.6 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|240104007|ref|YP_002960316.1| - 0.0068 16.1 3.3 0.01 15.5 0.3 2.5 2 0 0 2 2 2 1 Thymidylate kinase TrwB_AAD_bind PF10412.9 gi|240104007|ref|YP_002960316.1| - 0.0073 15.3 0.0 0.013 14.4 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain APS_kinase PF01583.20 gi|240104007|ref|YP_002960316.1| - 0.0091 15.9 0.0 0.029 14.2 0.0 1.8 1 0 0 1 1 1 1 Adenylylsulphate kinase DUF1611 PF07755.11 gi|240104007|ref|YP_002960316.1| - 0.022 14.0 0.0 0.052 12.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain Glyco_trans_4_4 PF13579.6 gi|240104007|ref|YP_002960316.1| - 0.032 14.7 0.1 0.38 11.2 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain VirC1 PF07015.11 gi|240104007|ref|YP_002960316.1| - 0.036 13.4 0.0 0.59 9.4 0.0 2.3 2 0 0 2 2 2 0 VirC1 protein AAA_26 PF13500.6 gi|240104007|ref|YP_002960316.1| - 0.039 13.8 1.2 0.17 11.7 0.2 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|240104007|ref|YP_002960316.1| - 0.042 14.3 0.4 0.77 10.2 0.1 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|240104007|ref|YP_002960316.1| - 0.055 13.0 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|240104007|ref|YP_002960316.1| - 0.057 13.8 0.3 0.12 12.7 0.3 1.7 1 1 0 1 1 1 0 AAA domain MipZ PF09140.11 gi|240104007|ref|YP_002960316.1| - 0.067 12.5 0.4 5 6.3 0.1 2.4 1 1 1 2 2 2 0 ATPase MipZ CLP1_P PF16575.5 gi|240104007|ref|YP_002960316.1| - 0.07 12.9 0.1 2.3 8.0 0.0 2.5 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PFOR_II PF17147.4 gi|240104007|ref|YP_002960316.1| - 0.11 12.8 0.2 2.1 8.7 0.0 2.9 3 0 0 3 3 2 0 Pyruvate:ferredoxin oxidoreductase core domain II NACHT PF05729.12 gi|240104007|ref|YP_002960316.1| - 0.11 12.4 0.3 0.39 10.6 0.2 2.0 2 0 0 2 2 1 0 NACHT domain KTI12 PF08433.10 gi|240104007|ref|YP_002960316.1| - 0.14 11.6 1.1 0.42 10.0 0.0 2.3 3 0 0 3 3 3 0 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|240104007|ref|YP_002960316.1| - 0.17 12.1 0.6 0.5 10.6 0.2 2.0 2 0 0 2 2 1 0 AAA domain JIP_LZII PF16471.5 gi|240104007|ref|YP_002960316.1| - 0.92 9.7 5.2 1.2 9.3 1.4 2.5 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II ribosomal_L24 PF17136.4 gi|240104008|ref|YP_002960317.1| - 0.14 12.6 0.1 0.19 12.2 0.1 1.1 1 0 0 1 1 1 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 TPR_19 PF14559.6 gi|240104009|ref|YP_002960318.1| - 0.13 12.8 0.0 8.8 6.9 0.0 3.7 5 0 0 5 5 5 0 Tetratricopeptide repeat PNP_UDP_1 PF01048.20 gi|240104010|ref|YP_002960319.1| - 6.8e-53 179.3 0.0 7.7e-53 179.1 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Class_IIIsignal PF04021.12 gi|240104011|ref|YP_002960320.1| - 0.0006 19.7 1.4 0.00094 19.1 1.4 1.3 1 0 0 1 1 1 1 Class III signal peptide Metallophos_2 PF12850.7 gi|240104012|ref|YP_002960321.1| - 0.011 16.0 0.1 0.15 12.2 0.1 2.1 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain FUN14 PF04930.15 gi|240104013|ref|YP_002960322.1| - 5.2e-12 46.0 10.6 1e-11 45.1 10.6 1.4 1 1 0 1 1 1 1 FUN14 family ApoO PF09769.9 gi|240104013|ref|YP_002960322.1| - 0.17 11.9 2.4 9.3 6.2 0.0 2.1 1 1 1 2 2 2 0 Apolipoprotein O SPC12 PF06645.13 gi|240104013|ref|YP_002960322.1| - 0.21 11.7 6.7 0.081 13.0 2.8 2.1 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) PadR PF03551.14 gi|240104014|ref|YP_002960323.1| - 1.8e-18 66.2 0.6 2.5e-18 65.8 0.6 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|240104014|ref|YP_002960323.1| - 1.7e-05 25.4 0.6 2.1e-05 25.1 0.6 1.2 1 0 0 1 1 1 1 Replication terminator protein Mrr_N PF14338.6 gi|240104014|ref|YP_002960323.1| - 0.00078 19.5 0.0 0.063 13.4 0.0 2.2 1 1 0 1 1 1 1 Mrr N-terminal domain HTH_34 PF13601.6 gi|240104014|ref|YP_002960323.1| - 0.0016 18.6 0.0 0.0021 18.2 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF3116 PF11313.8 gi|240104014|ref|YP_002960323.1| - 0.0026 17.6 0.6 0.0042 16.9 0.6 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3116) Fe_dep_repress PF01325.19 gi|240104014|ref|YP_002960323.1| - 0.0088 16.2 0.0 0.017 15.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Replic_Relax PF13814.6 gi|240104014|ref|YP_002960323.1| - 0.013 15.6 0.0 0.013 15.5 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_5 PF01022.20 gi|240104014|ref|YP_002960323.1| - 0.014 15.3 0.1 0.1 12.5 0.0 2.4 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF505 PF04458.12 gi|240104014|ref|YP_002960323.1| - 0.032 12.6 0.8 0.033 12.6 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF2513 PF10711.9 gi|240104014|ref|YP_002960323.1| - 0.094 13.0 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) zinc_ribbon_2 PF13240.6 gi|240104015|ref|YP_002960324.1| - 9.6e-05 22.0 3.0 0.00014 21.5 3.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L40e PF01020.17 gi|240104015|ref|YP_002960324.1| - 0.00055 19.8 3.6 0.00065 19.5 3.6 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.7 gi|240104015|ref|YP_002960324.1| - 0.0012 18.8 0.5 0.0013 18.7 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|240104015|ref|YP_002960324.1| - 0.0036 16.9 3.1 0.0065 16.1 3.1 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|240104015|ref|YP_002960324.1| - 0.0038 16.6 2.1 0.005 16.2 2.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Toxin_5 PF05294.13 gi|240104015|ref|YP_002960324.1| - 0.019 15.3 2.4 0.026 14.9 2.4 1.2 1 0 0 1 1 1 0 Scorpion short toxin UPF0547 PF10571.9 gi|240104015|ref|YP_002960324.1| - 0.024 14.7 0.7 0.036 14.1 0.7 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_13 PF09855.9 gi|240104015|ref|YP_002960324.1| - 0.2 11.9 1.4 14 6.0 0.4 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.16 gi|240104015|ref|YP_002960324.1| - 0.31 10.9 2.9 1.3 8.9 0.9 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_S2 PF00318.20 gi|240104016|ref|YP_002960325.1| - 2.7e-27 95.4 0.1 3.4e-14 52.6 0.3 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_N PF03952.16 gi|240104017|ref|YP_002960326.1| - 8.7e-24 84.2 0.0 2.2e-22 79.6 0.0 2.3 1 1 0 1 1 1 1 Enolase, N-terminal domain Enolase_C PF00113.22 gi|240104017|ref|YP_002960326.1| - 4e-06 26.3 0.0 1.2e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 Enolase, C-terminal TIM barrel domain RNA_pol_Rpb6 PF01192.22 gi|240104018|ref|YP_002960327.1| - 3.9e-11 42.7 0.1 4.5e-11 42.5 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|240104019|ref|YP_002960328.1| - 7.8e-30 103.0 0.3 9.1e-30 102.8 0.3 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|240104019|ref|YP_002960328.1| - 0.0052 17.0 0.6 0.0088 16.3 0.6 1.4 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.19 gi|240104020|ref|YP_002960329.1| - 1.2e-30 106.5 0.7 1.4e-30 106.3 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|240104021|ref|YP_002960330.1| - 1.1e-13 51.6 0.3 1.9e-11 44.3 0.3 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 RHH_8 PF17723.1 gi|240104021|ref|YP_002960330.1| - 0.054 13.7 0.0 0.09 13.0 0.0 1.3 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family Ribosomal_L18 PF17135.4 gi|240104022|ref|YP_002960331.1| - 7.9e-16 58.0 0.0 9e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|240104022|ref|YP_002960331.1| - 1.4e-07 32.3 0.5 3.4e-07 31.0 0.5 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|240104023|ref|YP_002960332.1| - 4.4e-28 97.9 0.0 8.8e-28 96.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|240104023|ref|YP_002960332.1| - 1.3e-18 66.1 0.0 2.5e-18 65.3 0.0 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RHH_4 PF13467.6 gi|240104023|ref|YP_002960332.1| - 0.21 11.5 0.1 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix domain Ribosomal_S11 PF00411.19 gi|240104024|ref|YP_002960333.1| - 1.3e-47 160.8 1.5 1.8e-47 160.3 1.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 CBM_25 PF03423.13 gi|240104024|ref|YP_002960333.1| - 0.035 14.3 0.0 0.07 13.4 0.0 1.5 1 0 0 1 1 1 0 Carbohydrate binding domain (family 25) S4 PF01479.25 gi|240104025|ref|YP_002960334.1| - 2.5e-17 62.3 0.2 2.5e-17 62.3 0.2 2.2 2 0 0 2 2 2 1 S4 domain PEARLI-4 PF05278.12 gi|240104025|ref|YP_002960334.1| - 0.064 12.8 3.1 0.091 12.3 3.1 1.2 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) Transglut_core2 PF13369.6 gi|240104025|ref|YP_002960334.1| - 0.47 10.0 3.8 0.32 10.5 2.0 1.6 2 0 0 2 2 2 0 Transglutaminase-like superfamily Ribosomal_S13 PF00416.22 gi|240104026|ref|YP_002960335.1| - 2.8e-40 137.6 0.0 3.3e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 H2TH PF06831.14 gi|240104026|ref|YP_002960335.1| - 0.14 12.1 0.0 0.21 11.6 0.0 1.2 1 0 0 1 1 1 0 Formamidopyrimidine-DNA glycosylase H2TH domain MTS PF05175.14 gi|240104027|ref|YP_002960336.1| - 6e-45 152.8 0.0 6.9e-45 152.6 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|240104027|ref|YP_002960336.1| - 3.7e-11 43.0 0.0 4.7e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|240104027|ref|YP_002960336.1| - 1e-10 41.6 0.0 1.3e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|240104027|ref|YP_002960336.1| - 1.7e-09 38.3 0.0 3.1e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|240104027|ref|YP_002960336.1| - 9.3e-08 31.9 0.0 1.2e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|240104027|ref|YP_002960336.1| - 8.1e-07 29.6 0.0 2.5e-06 28.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|240104027|ref|YP_002960336.1| - 4.2e-06 27.4 0.0 7.1e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|240104027|ref|YP_002960336.1| - 4.5e-06 26.7 0.0 6.2e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|240104027|ref|YP_002960336.1| - 9.6e-06 25.1 0.0 1.2e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|240104027|ref|YP_002960336.1| - 1.3e-05 25.1 0.0 1.9e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|240104027|ref|YP_002960336.1| - 1.6e-05 24.1 0.0 2.1e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_16 PF10294.9 gi|240104027|ref|YP_002960336.1| - 3.2e-05 23.7 0.0 4.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase PCMT PF01135.19 gi|240104027|ref|YP_002960336.1| - 0.00026 20.8 0.1 0.00045 20.0 0.1 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|240104027|ref|YP_002960336.1| - 0.0031 16.9 0.0 0.0035 16.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family AviRa PF11599.8 gi|240104027|ref|YP_002960336.1| - 0.012 15.0 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa UPF0020 PF01170.18 gi|240104027|ref|YP_002960336.1| - 0.014 15.1 0.0 0.02 14.6 0.0 1.5 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 TehB PF03848.14 gi|240104027|ref|YP_002960336.1| - 0.017 14.5 0.0 0.029 13.8 0.0 1.3 1 1 0 1 1 1 0 Tellurite resistance protein TehB N6_Mtase PF02384.16 gi|240104027|ref|YP_002960336.1| - 0.027 13.8 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_15 PF09445.10 gi|240104027|ref|YP_002960336.1| - 0.055 13.1 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_10 PF05971.12 gi|240104027|ref|YP_002960336.1| - 0.088 12.1 0.0 0.15 11.3 0.0 1.4 1 1 0 1 1 1 0 RNA methyltransferase TruB_N PF01509.18 gi|240104029|ref|YP_002960338.1| - 1.3e-25 90.5 0.4 1.9e-15 57.5 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|240104029|ref|YP_002960338.1| - 5e-24 84.2 0.0 1.2e-23 83.0 0.0 1.7 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|240104029|ref|YP_002960338.1| - 5.7e-21 74.3 1.1 1.8e-20 72.7 0.6 2.0 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.12 gi|240104029|ref|YP_002960338.1| - 2.7e-16 59.4 0.0 5.9e-16 58.3 0.0 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|240104029|ref|YP_002960338.1| - 0.0002 21.5 0.1 0.00062 20.0 0.0 1.9 2 0 0 2 2 2 1 UPF0113 PUA domain SIR2_2 PF13289.6 gi|240104029|ref|YP_002960338.1| - 0.063 13.4 0.0 0.15 12.1 0.0 1.6 2 0 0 2 2 2 0 SIR2-like domain HicB_lk_antitox PF15919.5 gi|240104030|ref|YP_002960339.1| - 0.00094 19.3 0.0 0.00096 19.3 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system SHNi-TPR PF10516.9 gi|240104030|ref|YP_002960339.1| - 0.036 13.5 0.1 0.052 13.0 0.1 1.2 1 0 0 1 1 1 0 SHNi-TPR TPR_11 PF13414.6 gi|240104030|ref|YP_002960339.1| - 0.12 12.1 0.2 0.17 11.6 0.2 1.2 1 0 0 1 1 1 0 TPR repeat Ribosomal_L14e PF01929.17 gi|240104031|ref|YP_002960340.1| - 6.9e-05 23.3 0.0 0.00012 22.5 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L14 KOW PF00467.29 gi|240104031|ref|YP_002960340.1| - 0.0034 17.3 3.8 0.0065 16.4 3.8 1.4 1 0 0 1 1 1 1 KOW motif XisI PF08869.11 gi|240104031|ref|YP_002960340.1| - 0.04 14.3 0.0 0.043 14.2 0.0 1.1 1 0 0 1 1 1 0 XisI protein Cytidylate_kin2 PF13189.6 gi|240104032|ref|YP_002960341.1| - 3.5e-27 95.7 1.4 2.8e-25 89.5 1.4 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|240104032|ref|YP_002960341.1| - 3.8e-16 59.8 0.2 5.1e-16 59.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|240104032|ref|YP_002960341.1| - 2.1e-15 57.1 3.8 2.7e-09 37.1 1.2 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|240104032|ref|YP_002960341.1| - 8.6e-14 52.1 0.1 1.5e-13 51.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|240104032|ref|YP_002960341.1| - 0.00013 22.1 0.0 0.00021 21.4 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|240104032|ref|YP_002960341.1| - 0.00022 21.4 0.2 0.00061 20.0 0.2 1.6 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|240104032|ref|YP_002960341.1| - 0.00041 20.1 0.5 0.26 10.9 0.0 2.2 1 1 1 2 2 2 2 Dephospho-CoA kinase dNK PF01712.19 gi|240104032|ref|YP_002960341.1| - 0.00053 19.9 0.7 0.095 12.5 0.0 2.9 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_28 PF13521.6 gi|240104032|ref|YP_002960341.1| - 0.0021 18.3 0.2 0.0052 17.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|240104032|ref|YP_002960341.1| - 0.036 13.3 0.0 0.046 12.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF2226 PF09987.9 gi|240104032|ref|YP_002960341.1| - 0.037 13.4 0.1 0.052 12.9 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2226) AAA_22 PF13401.6 gi|240104032|ref|YP_002960341.1| - 0.049 13.9 0.0 0.066 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain RHH_4 PF13467.6 gi|240104032|ref|YP_002960341.1| - 0.056 13.3 0.2 3 7.8 0.1 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix domain PRK PF00485.18 gi|240104032|ref|YP_002960341.1| - 0.057 13.2 0.4 0.5 10.1 0.1 2.1 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family SKI PF01202.22 gi|240104032|ref|YP_002960341.1| - 0.06 13.5 0.5 0.53 10.4 0.5 2.1 1 1 0 1 1 1 0 Shikimate kinase Ribosomal_L34e PF01199.18 gi|240104033|ref|YP_002960342.1| - 1.7e-24 85.9 3.1 1.9e-24 85.8 3.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DZR PF12773.7 gi|240104033|ref|YP_002960342.1| - 0.00038 20.4 0.3 0.00053 19.9 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Sgf11 PF08209.11 gi|240104033|ref|YP_002960342.1| - 0.025 14.1 1.7 2.6 7.7 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Phage_Nu1 PF07471.12 gi|240104033|ref|YP_002960342.1| - 0.22 11.3 0.0 0.24 11.1 0.0 1.0 1 0 0 1 1 1 0 Phage DNA packaging protein Nu1 EMC3_TMCO1 PF01956.16 gi|240104034|ref|YP_002960343.1| - 3.3e-28 98.5 6.9 3.8e-28 98.3 6.9 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|240104034|ref|YP_002960343.1| - 7.7e-10 38.9 1.4 9e-10 38.7 1.4 1.2 1 0 0 1 1 1 1 60Kd inner membrane protein DUF2232 PF09991.9 gi|240104034|ref|YP_002960343.1| - 1.6e-05 24.3 1.1 2e-05 23.9 1.1 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2232) DUF4199 PF13858.6 gi|240104034|ref|YP_002960343.1| - 0.0025 18.3 1.8 0.0025 18.3 1.8 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF4199) DUF2208 PF09973.9 gi|240104034|ref|YP_002960343.1| - 0.003 17.2 7.0 0.0046 16.6 7.0 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2208) LUC7 PF03194.15 gi|240104034|ref|YP_002960343.1| - 0.0044 16.7 0.2 0.0053 16.5 0.2 1.1 1 0 0 1 1 1 1 LUC7 N_terminus YukC PF10140.9 gi|240104034|ref|YP_002960343.1| - 0.012 14.5 1.2 0.015 14.2 1.2 1.1 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukC Folate_carrier PF01770.18 gi|240104034|ref|YP_002960343.1| - 0.019 13.7 0.1 0.026 13.3 0.1 1.2 1 0 0 1 1 1 0 Reduced folate carrier LapA_dom PF06305.11 gi|240104034|ref|YP_002960343.1| - 0.061 13.1 0.0 0.061 13.1 0.0 2.6 4 0 0 4 4 4 0 Lipopolysaccharide assembly protein A domain DctM PF06808.12 gi|240104034|ref|YP_002960343.1| - 0.077 11.8 0.3 0.2 10.4 0.3 1.6 1 1 0 1 1 1 0 Tripartite ATP-independent periplasmic transporter, DctM component PP_kinase_N PF13089.6 gi|240104034|ref|YP_002960343.1| - 0.14 12.5 1.8 0.19 12.0 1.8 1.2 1 0 0 1 1 1 0 Polyphosphate kinase N-terminal domain OmpH PF03938.14 gi|240104034|ref|YP_002960343.1| - 0.26 11.6 12.7 0.37 11.1 12.7 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) P5-ATPase PF12409.8 gi|240104034|ref|YP_002960343.1| - 3.7 7.7 9.3 0.65 10.1 3.8 2.3 1 1 1 2 2 2 0 P5-type ATPase cation transporter AAA_17 PF13207.6 gi|240104035|ref|YP_002960344.1| - 2.2e-36 125.3 0.1 3.5e-36 124.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|240104035|ref|YP_002960344.1| - 5.1e-09 36.8 0.0 1.2e-08 35.6 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|240104035|ref|YP_002960344.1| - 0.0014 18.7 0.3 0.0046 17.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|240104035|ref|YP_002960344.1| - 0.002 18.6 0.2 0.0067 16.9 0.0 2.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|240104035|ref|YP_002960344.1| - 0.0031 17.9 0.1 0.0068 16.8 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|240104035|ref|YP_002960344.1| - 0.0034 17.6 0.0 0.0055 17.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|240104035|ref|YP_002960344.1| - 0.0097 16.1 0.6 0.025 14.7 0.6 2.0 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|240104035|ref|YP_002960344.1| - 0.029 14.3 0.1 0.075 12.9 0.1 1.7 1 0 0 1 1 1 0 NTPase MeaB PF03308.16 gi|240104035|ref|YP_002960344.1| - 0.033 13.1 0.1 0.08 11.9 0.1 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|240104035|ref|YP_002960344.1| - 0.041 13.9 0.2 0.15 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|240104035|ref|YP_002960344.1| - 0.056 12.6 0.0 0.09 12.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain APS_kinase PF01583.20 gi|240104035|ref|YP_002960344.1| - 0.13 12.2 0.6 0.35 10.8 0.1 2.0 2 1 0 2 2 2 0 Adenylylsulphate kinase MMR_HSR1 PF01926.23 gi|240104035|ref|YP_002960344.1| - 0.15 12.1 2.2 0.21 11.7 0.1 2.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|240104035|ref|YP_002960344.1| - 0.18 12.1 3.2 0.31 11.3 0.2 2.2 1 1 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|240104035|ref|YP_002960344.1| - 0.18 11.5 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SecY PF00344.20 gi|240104036|ref|YP_002960345.1| - 2e-70 237.5 13.2 2.4e-70 237.2 13.2 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|240104036|ref|YP_002960345.1| - 5.5e-10 38.9 0.7 2.3e-09 36.9 0.7 2.2 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|240104037|ref|YP_002960346.1| - 8e-19 68.6 0.3 1.2e-18 68.0 0.3 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 gi|240104038|ref|YP_002960347.1| - 4.7e-17 61.6 0.1 9.2e-17 60.7 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 gi|240104039|ref|YP_002960348.1| - 3.5e-21 75.0 0.6 7.7e-21 73.9 0.6 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|240104039|ref|YP_002960348.1| - 3.9e-21 74.3 0.0 1.2e-20 72.8 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|240104040|ref|YP_002960349.1| - 1.4e-27 96.6 0.2 1.3e-15 57.8 0.1 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|240104040|ref|YP_002960349.1| - 4.3e-11 43.6 0.3 4.3e-11 43.6 0.3 1.6 2 0 0 2 2 2 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|240104040|ref|YP_002960349.1| - 1.5e-09 38.2 0.0 2.4e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|240104041|ref|YP_002960350.1| - 2.8e-59 199.3 11.9 3.2e-59 199.1 11.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e LpxI_N PF17930.1 gi|240104041|ref|YP_002960350.1| - 0.022 14.6 0.2 0.039 13.8 0.1 1.5 1 1 0 1 1 1 0 LpxI N-terminal domain DUF1707 PF08044.11 gi|240104041|ref|YP_002960350.1| - 0.025 14.6 0.4 1.4 9.0 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) Ribosomal_L32e PF01655.18 gi|240104042|ref|YP_002960351.1| - 4.1e-42 143.0 0.3 5.1e-42 142.7 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|240104043|ref|YP_002960352.1| - 1.5e-37 128.1 13.8 1.1e-19 70.9 4.7 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 YbbR PF07949.12 gi|240104043|ref|YP_002960352.1| - 0.00014 22.2 5.1 1.6 9.1 0.3 3.2 3 0 0 3 3 3 3 YbbR-like protein TubC_N PF18563.1 gi|240104043|ref|YP_002960352.1| - 0.043 13.8 0.0 0.28 11.2 0.0 2.1 1 1 1 2 2 2 0 TubC N-terminal docking domain HSP20 PF00011.21 gi|240104043|ref|YP_002960352.1| - 0.21 11.7 5.1 17 5.6 0.1 3.4 3 1 1 4 4 4 0 Hsp20/alpha crystallin family Glyco_hydro_65C PF03633.15 gi|240104043|ref|YP_002960352.1| - 0.26 11.2 2.2 1.2 9.0 0.3 2.8 2 1 0 2 2 2 0 Glycosyl hydrolase family 65, C-terminal domain Ribosomal_S8 PF00410.19 gi|240104044|ref|YP_002960353.1| - 4.1e-30 104.3 0.0 4.8e-30 104.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 Acetyltransf_7 PF13508.7 gi|240104044|ref|YP_002960353.1| - 0.043 14.2 0.2 0.063 13.7 0.2 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Ribosomal_S14 PF00253.21 gi|240104045|ref|YP_002960354.1| - 4.9e-09 35.8 5.3 5.4e-09 35.7 5.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|240104045|ref|YP_002960354.1| - 0.086 12.7 4.2 0.14 12.1 4.2 1.3 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS DUF2039 PF10217.9 gi|240104045|ref|YP_002960354.1| - 0.15 12.5 2.4 3 8.2 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) Ribosomal_L5_C PF00673.21 gi|240104046|ref|YP_002960355.1| - 5.4e-26 90.6 0.0 1.1e-25 89.7 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|240104046|ref|YP_002960355.1| - 5.1e-20 71.6 0.1 9.4e-20 70.7 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 P53_tetramer PF07710.11 gi|240104046|ref|YP_002960355.1| - 0.087 12.2 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 P53 tetramerisation motif Ribosomal_S4e PF00900.20 gi|240104047|ref|YP_002960356.1| - 1.6e-22 79.1 0.0 2.8e-22 78.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|240104047|ref|YP_002960356.1| - 1.8e-17 63.1 6.1 3.1e-17 62.4 6.1 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|240104047|ref|YP_002960356.1| - 4.6e-13 48.6 0.1 4.6e-13 48.6 0.1 1.8 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 gi|240104047|ref|YP_002960356.1| - 0.0073 16.2 0.5 0.015 15.2 0.5 1.6 1 0 0 1 1 1 1 KOW motif 40S_S4_C PF16121.5 gi|240104047|ref|YP_002960356.1| - 0.009 15.6 0.0 0.031 13.9 0.0 2.0 2 0 0 2 2 2 1 40S ribosomal protein S4 C-terminus Ribosomal_L26 PF16906.5 gi|240104048|ref|YP_002960357.1| - 1e-36 125.2 0.4 1.3e-36 124.9 0.4 1.2 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|240104048|ref|YP_002960357.1| - 9.1e-11 41.3 2.3 1.6e-10 40.6 2.3 1.4 1 0 0 1 1 1 1 KOW motif hSH3 PF14603.6 gi|240104048|ref|YP_002960357.1| - 0.015 15.7 0.0 0.024 15.1 0.0 1.4 1 1 0 1 1 1 0 Helically-extended SH3 domain ribosomal_L24 PF17136.4 gi|240104048|ref|YP_002960357.1| - 0.09 13.2 0.6 11 6.6 0.1 2.5 2 1 0 2 2 2 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 Ribosomal_L14 PF00238.19 gi|240104049|ref|YP_002960358.1| - 1.2e-34 119.0 1.3 1.3e-34 118.9 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e DUF5335 PF17269.2 gi|240104049|ref|YP_002960358.1| - 0.039 13.8 0.0 0.057 13.3 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5335) Ribosomal_S17 PF00366.20 gi|240104050|ref|YP_002960359.1| - 2.6e-25 88.3 4.0 3.3e-25 88.0 4.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 DUF4537 PF15057.6 gi|240104050|ref|YP_002960359.1| - 0.0069 16.4 0.1 0.0084 16.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4537) Ribosomal_S17_N PF16205.5 gi|240104050|ref|YP_002960359.1| - 0.012 15.9 0.2 0.03 14.7 0.0 1.8 2 0 0 2 2 2 0 Ribosomal_S17 N-terminal zf-C3H1 PF10650.9 gi|240104050|ref|YP_002960359.1| - 0.081 12.7 2.5 0.11 12.2 1.1 1.8 2 0 0 2 2 2 0 Putative zinc-finger domain UPF0086 PF01868.16 gi|240104051|ref|YP_002960360.1| - 5.4e-20 71.1 0.0 6e-20 70.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 SUI1 PF01253.22 gi|240104052|ref|YP_002960361.1| - 9.4e-21 74.1 0.3 1.1e-20 73.9 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|240104052|ref|YP_002960361.1| - 0.00012 22.4 0.3 0.00016 21.9 0.3 1.2 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DUF2179 PF10035.9 gi|240104052|ref|YP_002960361.1| - 0.065 13.0 0.2 0.11 12.2 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2179) TetR_C_27 PF17935.1 gi|240104052|ref|YP_002960361.1| - 0.12 12.4 0.1 0.35 11.0 0.0 1.6 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Ribosomal_L29 PF00831.23 gi|240104053|ref|YP_002960362.1| - 7.6e-17 61.0 4.6 9e-17 60.8 4.6 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Exonuc_X-T_C PF08411.10 gi|240104053|ref|YP_002960362.1| - 0.021 14.0 0.2 0.08 12.1 0.0 1.8 1 1 1 2 2 2 0 Exonuclease C-terminal DUF1192 PF06698.11 gi|240104053|ref|YP_002960362.1| - 0.029 14.4 0.4 0.029 14.4 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Radical_SAM PF04055.21 gi|240104053|ref|YP_002960362.1| - 0.13 12.6 0.1 0.13 12.6 0.1 1.1 1 0 0 1 1 1 0 Radical SAM superfamily Ribosomal_S3_C PF00189.20 gi|240104054|ref|YP_002960363.1| - 3.7e-24 85.1 1.1 7.1e-24 84.1 1.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|240104054|ref|YP_002960363.1| - 2.4e-15 56.1 0.8 5.4e-15 55.0 0.2 1.9 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|240104054|ref|YP_002960363.1| - 0.025 14.4 0.7 0.1 12.5 0.2 2.3 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.19 gi|240104055|ref|YP_002960364.1| - 8.4e-33 112.7 0.0 9.9e-33 112.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|240104056|ref|YP_002960365.1| - 1e-35 121.5 0.4 1.4e-35 121.0 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.17 gi|240104056|ref|YP_002960365.1| - 0.0046 17.5 0.3 0.0069 16.9 0.3 1.3 1 0 0 1 1 1 1 bZIP Maf transcription factor pPIWI_RE_Z PF18155.1 gi|240104056|ref|YP_002960365.1| - 0.016 15.1 0.0 0.02 14.8 0.0 1.1 1 0 0 1 1 1 0 pPIWI RE three-gene island domain Z Citrate_synt PF00285.21 gi|240104056|ref|YP_002960365.1| - 0.023 13.8 0.0 0.023 13.8 0.0 1.2 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L39 PF00832.20 gi|240104056|ref|YP_002960365.1| - 0.026 14.2 0.7 0.049 13.3 0.7 1.5 1 0 0 1 1 1 0 Ribosomal L39 protein Ribosomal_L2_C PF03947.18 gi|240104057|ref|YP_002960366.1| - 1.5e-43 148.0 0.6 3.1e-43 147.0 0.6 1.5 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|240104057|ref|YP_002960366.1| - 7e-22 77.2 0.0 1.6e-21 76.0 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|240104058|ref|YP_002960367.1| - 6.9e-21 74.4 7.0 4.7e-20 71.8 7.0 1.8 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.17 gi|240104058|ref|YP_002960367.1| - 0.0012 18.7 0.4 0.0015 18.3 0.4 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA Ubiquitin_4 PF18036.1 gi|240104058|ref|YP_002960367.1| - 0.06 13.4 0.5 0.079 13.0 0.5 1.3 1 0 0 1 1 1 0 Ubiquitin-like domain ASL_C PF08328.11 gi|240104058|ref|YP_002960367.1| - 0.069 13.2 0.4 0.078 13.1 0.4 1.1 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal Ribosomal_L4 PF00573.22 gi|240104059|ref|YP_002960368.1| - 5e-50 169.9 0.2 6e-50 169.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF2149 PF09919.9 gi|240104059|ref|YP_002960368.1| - 0.041 14.1 0.0 0.078 13.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) Ribosomal_L3 PF00297.22 gi|240104060|ref|YP_002960369.1| - 9.3e-92 307.8 0.2 1.1e-91 307.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|240104061|ref|YP_002960370.1| - 4.9e-49 167.4 0.0 6.9e-49 166.9 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|240104061|ref|YP_002960370.1| - 0.00041 20.5 0.0 0.79 9.9 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family Lig_C PF18330.1 gi|240104062|ref|YP_002960371.1| - 1.1e-28 99.8 0.1 1.9e-28 99.0 0.1 1.4 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|240104062|ref|YP_002960371.1| - 1.2e-17 64.7 0.0 2e-17 63.9 0.0 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|240104062|ref|YP_002960371.1| - 3.4e-06 26.8 0.0 0.031 13.9 0.0 2.2 2 0 0 2 2 2 2 ATP dependent DNA ligase domain TPR_12 PF13424.6 gi|240104063|ref|YP_002960372.1| - 8e-13 48.5 12.1 4.2e-06 26.9 0.2 4.1 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|240104063|ref|YP_002960372.1| - 1.9e-09 36.9 17.5 0.0046 17.0 0.1 7.2 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|240104063|ref|YP_002960372.1| - 3.2e-08 33.3 1.9 0.0013 18.2 0.5 2.2 1 1 1 2 2 2 2 MalT-like TPR region NB-ARC PF00931.22 gi|240104063|ref|YP_002960372.1| - 5.6e-07 29.0 0.0 7.1e-06 25.4 0.0 2.2 1 1 0 1 1 1 1 NB-ARC domain HTH_20 PF12840.7 gi|240104063|ref|YP_002960372.1| - 2.5e-06 27.4 1.1 1.1e-05 25.4 0.1 2.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|240104063|ref|YP_002960372.1| - 3.9e-06 26.6 0.2 1.4e-05 24.8 0.2 2.0 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|240104063|ref|YP_002960372.1| - 6.8e-06 25.9 0.3 0.017 15.0 0.0 2.7 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB AAA_16 PF13191.6 gi|240104063|ref|YP_002960372.1| - 2.9e-05 24.5 0.7 0.0004 20.8 0.7 2.5 1 1 0 1 1 1 1 AAA ATPase domain TPR_7 PF13176.6 gi|240104063|ref|YP_002960372.1| - 9.3e-05 22.2 4.5 1.3 9.3 0.1 5.1 4 0 0 4 4 4 1 Tetratricopeptide repeat MarR_2 PF12802.7 gi|240104063|ref|YP_002960372.1| - 0.00012 21.9 0.6 0.00079 19.3 0.2 2.5 2 0 0 2 2 2 1 MarR family ArsR PF09824.9 gi|240104063|ref|YP_002960372.1| - 0.0007 19.2 0.0 0.0015 18.2 0.0 1.5 1 0 0 1 1 1 1 ArsR transcriptional regulator TPR_19 PF14559.6 gi|240104063|ref|YP_002960372.1| - 0.00085 19.8 0.7 17 6.0 0.0 4.4 2 2 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|240104063|ref|YP_002960372.1| - 0.0016 19.1 12.3 10 7.2 0.0 7.2 5 2 3 8 8 6 0 Tetratricopeptide repeat AAA_22 PF13401.6 gi|240104063|ref|YP_002960372.1| - 0.0024 18.2 0.1 0.015 15.6 0.1 2.4 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|240104063|ref|YP_002960372.1| - 0.0055 16.7 0.1 0.023 14.6 0.1 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea HTH_24 PF13412.6 gi|240104063|ref|YP_002960372.1| - 0.0058 16.2 0.8 0.014 15.0 0.8 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TPR_1 PF00515.28 gi|240104063|ref|YP_002960372.1| - 0.0067 16.2 8.5 0.013 15.3 0.1 5.0 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|240104063|ref|YP_002960372.1| - 0.011 16.2 0.1 19 6.2 0.0 4.2 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF4423 PF14394.6 gi|240104063|ref|YP_002960372.1| - 0.012 15.3 0.1 0.073 12.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) AAA PF00004.29 gi|240104063|ref|YP_002960372.1| - 0.012 16.0 0.0 0.029 14.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ComR_TPR PF18710.1 gi|240104063|ref|YP_002960372.1| - 0.019 14.6 0.2 0.59 9.7 0.0 2.3 2 0 0 2 2 2 0 ComR tetratricopeptide MarR PF01047.22 gi|240104063|ref|YP_002960372.1| - 0.024 14.5 0.2 0.61 10.1 0.1 2.4 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.10 gi|240104063|ref|YP_002960372.1| - 0.025 14.4 0.3 0.5 10.2 0.1 3.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain AAA_24 PF13479.6 gi|240104063|ref|YP_002960372.1| - 0.035 13.8 0.0 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain SMC_ScpB PF04079.16 gi|240104063|ref|YP_002960372.1| - 0.04 13.5 0.0 0.17 11.5 0.0 1.9 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB NACHT PF05729.12 gi|240104063|ref|YP_002960372.1| - 0.074 13.0 0.1 0.42 10.5 0.3 2.3 2 1 0 2 2 1 0 NACHT domain TPR_8 PF13181.6 gi|240104063|ref|YP_002960372.1| - 0.1 12.9 16.8 0.61 10.4 0.0 5.7 6 1 1 7 7 4 0 Tetratricopeptide repeat DUF2250 PF10007.9 gi|240104063|ref|YP_002960372.1| - 0.11 12.6 0.0 0.68 10.1 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|240104063|ref|YP_002960372.1| - 0.12 12.9 0.1 6.7 7.3 0.0 2.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain AAA_14 PF13173.6 gi|240104063|ref|YP_002960372.1| - 0.12 12.4 0.0 0.36 10.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain HTH_Crp_2 PF13545.6 gi|240104063|ref|YP_002960372.1| - 0.13 12.2 0.6 0.6 10.1 0.6 2.1 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain TPR_11 PF13414.6 gi|240104063|ref|YP_002960372.1| - 0.14 11.8 0.1 0.14 11.8 0.1 4.0 5 0 0 5 5 4 0 TPR repeat SRP_TPR_like PF17004.5 gi|240104063|ref|YP_002960372.1| - 0.37 10.8 3.0 21 5.2 0.2 3.5 3 1 1 4 4 3 0 Putative TPR-like repeat TPR_16 PF13432.6 gi|240104063|ref|YP_002960372.1| - 0.69 10.6 11.4 11 6.7 2.3 5.3 6 2 0 6 6 5 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|240104063|ref|YP_002960372.1| - 6.1 6.9 14.3 10 6.2 0.0 5.5 6 0 0 6 6 6 0 Tetratricopeptide repeat HTH_46 PF15977.5 gi|240104064|ref|YP_002960373.1| - 0.0011 18.9 0.1 0.0013 18.6 0.1 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix DNA binding Cu_amine_oxidN1 PF07833.11 gi|240104065|ref|YP_002960374.1| - 0.036 14.6 0.0 0.07 13.6 0.0 1.5 1 0 0 1 1 1 0 Copper amine oxidase N-terminal domain Transglut_core2 PF13369.6 gi|240104066|ref|YP_002960375.1| - 0.005 16.4 0.0 0.0092 15.6 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily Ribosomal_L16 PF00252.18 gi|240104067|ref|YP_002960376.1| - 1.1e-32 112.7 0.3 1.4e-32 112.5 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e MFS_1 PF07690.16 gi|240104068|ref|YP_002960377.1| - 5.9e-17 61.6 36.7 5.9e-17 61.6 36.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Aminotran_5 PF00266.19 gi|240104069|ref|YP_002960378.1| - 7.7e-41 140.3 0.0 9.2e-41 140.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V T2SSE PF00437.20 gi|240104071|ref|YP_002960380.1| - 4.3e-06 26.0 0.0 6e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|240104071|ref|YP_002960380.1| - 4.8e-05 23.8 0.0 7.1e-05 23.3 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain TniB PF05621.11 gi|240104071|ref|YP_002960380.1| - 0.0047 16.3 0.0 0.88 8.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein CPT PF07931.12 gi|240104071|ref|YP_002960380.1| - 0.0074 16.1 0.0 0.0092 15.8 0.0 1.3 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_25 PF13481.6 gi|240104071|ref|YP_002960380.1| - 0.013 15.1 0.1 0.51 9.9 0.1 2.1 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|240104071|ref|YP_002960380.1| - 0.015 15.8 0.0 0.031 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|240104071|ref|YP_002960380.1| - 0.017 15.0 0.0 0.04 13.8 0.0 1.6 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|240104071|ref|YP_002960380.1| - 0.021 15.1 0.0 0.052 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|240104071|ref|YP_002960380.1| - 0.025 14.6 0.1 0.069 13.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain Kinase-PPPase PF03618.14 gi|240104071|ref|YP_002960380.1| - 0.026 14.3 0.5 0.72 9.6 0.2 2.0 1 1 1 2 2 2 0 Kinase/pyrophosphorylase AAA_19 PF13245.6 gi|240104071|ref|YP_002960380.1| - 0.032 14.6 0.0 0.043 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|240104071|ref|YP_002960380.1| - 0.038 14.3 0.2 0.06 13.7 0.2 1.5 1 1 0 1 1 1 0 Radical SAM superfamily DUF4423 PF14394.6 gi|240104071|ref|YP_002960380.1| - 0.041 13.6 0.0 0.075 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) FtsK_SpoIIIE PF01580.18 gi|240104071|ref|YP_002960380.1| - 0.052 12.9 0.0 0.13 11.6 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 gi|240104071|ref|YP_002960380.1| - 0.11 12.5 0.0 0.21 11.7 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|240104071|ref|YP_002960380.1| - 0.13 12.0 0.0 0.52 10.1 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain Guanylate_kin PF00625.21 gi|240104071|ref|YP_002960380.1| - 0.14 11.8 0.0 0.61 9.8 0.0 1.9 2 0 0 2 2 2 0 Guanylate kinase cobW PF02492.19 gi|240104071|ref|YP_002960380.1| - 0.17 11.4 0.0 0.35 10.4 0.0 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 gi|240104071|ref|YP_002960380.1| - 0.18 11.3 0.0 0.37 10.3 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region tRNA-synt_2 PF00152.20 gi|240104072|ref|YP_002960381.1| - 3.2e-37 128.3 0.0 3.5e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) GTP_EFTU_D4 PF14578.6 gi|240104073|ref|YP_002960382.1| - 8.5e-13 48.0 0.8 1e-12 47.8 0.8 1.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.25 gi|240104073|ref|YP_002960382.1| - 0.01 16.2 0.2 0.022 15.2 0.2 1.6 1 1 0 1 1 1 0 Elongation factor Tu domain 2 TatD_DNase PF01026.21 gi|240104074|ref|YP_002960383.1| - 7.1e-29 100.9 0.0 8.4e-29 100.7 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase PIN PF01850.21 gi|240104075|ref|YP_002960384.1| - 4.3e-14 53.1 0.4 7.3e-14 52.3 0.4 1.4 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|240104075|ref|YP_002960384.1| - 0.0022 17.7 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) DUF4411 PF14367.6 gi|240104075|ref|YP_002960384.1| - 0.13 12.1 0.4 0.31 10.9 0.4 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) RTC PF01137.21 gi|240104077|ref|YP_002960386.1| - 8.2e-79 263.9 0.0 9.3e-79 263.7 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|240104077|ref|YP_002960386.1| - 2.5e-23 82.5 0.1 4.1e-23 81.8 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Metallophos_2 PF12850.7 gi|240104079|ref|YP_002960388.1| - 2.5e-33 115.6 0.1 2.9e-33 115.4 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|240104079|ref|YP_002960388.1| - 7.2e-09 36.4 2.2 5.5e-07 30.3 0.1 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|240104079|ref|YP_002960388.1| - 6.7e-05 22.3 0.2 0.025 13.9 0.1 2.1 1 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Sld5 PF05916.11 gi|240104080|ref|YP_002960389.1| - 3.8e-07 30.5 0.3 5.2e-07 30.1 0.3 1.2 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.23 gi|240104081|ref|YP_002960390.1| - 4e-89 297.5 0.2 1.5e-47 161.6 0.0 3.3 3 0 0 3 3 3 3 MCM P-loop domain Intein_splicing PF14890.6 gi|240104081|ref|YP_002960390.1| - 6.5e-42 142.7 0.7 9.5e-21 74.2 0.0 2.6 2 0 0 2 2 2 2 Intein splicing domain MCM_OB PF17207.3 gi|240104081|ref|YP_002960390.1| - 2.8e-36 124.1 0.1 2.7e-35 121.0 0.0 2.2 2 0 0 2 2 2 1 MCM OB domain MCM_lid PF17855.1 gi|240104081|ref|YP_002960390.1| - 5.4e-31 106.9 2.6 1.2e-30 105.8 2.6 1.6 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|240104081|ref|YP_002960390.1| - 5.8e-14 52.5 0.1 2.1e-13 50.8 0.1 2.0 1 0 0 1 1 1 1 MCM N-terminal domain AAA_5 PF07728.14 gi|240104081|ref|YP_002960390.1| - 0.00019 21.5 0.0 0.00077 19.5 0.0 2.1 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Hint PF01079.20 gi|240104081|ref|YP_002960390.1| - 0.0014 18.2 0.0 0.62 9.5 0.0 2.3 2 0 0 2 2 2 2 Hint module Zn-ribbon_8 PF09723.10 gi|240104081|ref|YP_002960390.1| - 0.0037 17.3 0.4 0.0096 16.0 0.4 1.7 1 0 0 1 1 1 1 Zinc ribbon domain AAA_16 PF13191.6 gi|240104081|ref|YP_002960390.1| - 0.0054 17.1 1.0 0.034 14.5 0.1 2.9 3 0 0 3 3 2 1 AAA ATPase domain AAA_lid_2 PF17863.1 gi|240104081|ref|YP_002960390.1| - 0.012 15.5 1.1 1.4 8.8 0.7 2.8 2 0 0 2 2 2 0 AAA lid domain HypA PF01155.19 gi|240104081|ref|YP_002960390.1| - 0.019 15.0 0.1 0.072 13.1 0.1 1.9 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|240104081|ref|YP_002960390.1| - 0.027 14.1 0.2 0.056 13.1 0.2 1.4 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Mg_chelatase PF01078.21 gi|240104081|ref|YP_002960390.1| - 0.095 12.1 0.2 8.7 5.7 0.0 2.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF4072 PF13284.6 gi|240104081|ref|YP_002960390.1| - 1.4 9.4 3.7 1.7 9.1 1.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4072) eIF-5_eIF-2B PF01873.17 gi|240104082|ref|YP_002960391.1| - 3.7e-37 126.8 0.0 4.3e-37 126.6 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.6 gi|240104082|ref|YP_002960391.1| - 0.00095 19.5 0.7 0.0015 18.9 0.7 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar Elf1 PF05129.13 gi|240104082|ref|YP_002960391.1| - 0.0085 16.1 0.2 0.016 15.2 0.2 1.4 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.10 gi|240104082|ref|YP_002960391.1| - 0.0091 16.1 0.8 1.5 9.0 0.0 2.6 2 0 0 2 2 2 1 Zinc ribbon domain FdhE PF04216.12 gi|240104082|ref|YP_002960391.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation TF_Zn_Ribbon PF08271.12 gi|240104082|ref|YP_002960391.1| - 0.025 14.1 0.7 0.054 13.0 0.7 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|240104082|ref|YP_002960391.1| - 0.035 14.1 0.4 0.058 13.4 0.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.6 gi|240104082|ref|YP_002960391.1| - 0.079 12.3 0.9 0.14 11.5 0.9 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger zf_C2H2_13 PF18508.1 gi|240104082|ref|YP_002960391.1| - 0.09 12.4 2.4 0.99 9.0 0.2 2.8 3 0 0 3 3 3 0 Zinc finger domain zinc_ribbon_2 PF13240.6 gi|240104082|ref|YP_002960391.1| - 0.11 12.3 3.0 7 6.5 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|240104082|ref|YP_002960391.1| - 0.13 12.2 0.5 0.94 9.5 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF4609 PF15382.6 gi|240104082|ref|YP_002960391.1| - 0.16 11.9 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4609) Vps36-NZF-N PF16988.5 gi|240104082|ref|YP_002960391.1| - 0.17 11.3 0.8 0.43 10.0 0.8 1.8 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain DUF35_N PF12172.8 gi|240104082|ref|YP_002960391.1| - 0.19 11.7 3.4 5.2 7.0 0.1 2.3 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RRN7 PF11781.8 gi|240104082|ref|YP_002960391.1| - 0.19 11.5 0.8 5.6 6.7 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ribbon_3 PF13248.6 gi|240104082|ref|YP_002960391.1| - 0.21 11.1 2.6 0.8 9.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.7 gi|240104082|ref|YP_002960391.1| - 2.9 7.8 4.8 11 6.0 4.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) Carboxyl_trans PF01039.22 gi|240104083|ref|YP_002960392.1| - 1.3e-203 677.2 0.5 1.5e-203 677.0 0.5 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|240104083|ref|YP_002960392.1| - 3.6e-07 29.9 0.5 6.4e-07 29.1 0.1 1.6 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) FlgM PF04316.13 gi|240104083|ref|YP_002960392.1| - 0.081 13.3 0.2 0.2 12.1 0.2 1.6 1 0 0 1 1 1 0 Anti-sigma-28 factor, FlgM OAD_gamma PF04277.13 gi|240104084|ref|YP_002960393.1| - 5.7e-14 52.5 1.3 7.1e-14 52.2 1.3 1.1 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain Phage_holin_3_6 PF07332.11 gi|240104084|ref|YP_002960393.1| - 0.044 13.8 0.7 0.12 12.4 0.1 1.8 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF1772 PF08592.11 gi|240104084|ref|YP_002960393.1| - 0.062 13.6 0.2 11 6.3 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) DUF2207 PF09972.9 gi|240104084|ref|YP_002960393.1| - 0.09 11.5 0.1 0.1 11.3 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ApoO PF09769.9 gi|240104084|ref|YP_002960393.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.4 1 1 0 1 1 1 0 Apolipoprotein O Sigma_reg_N PF13800.6 gi|240104084|ref|YP_002960393.1| - 0.13 12.6 0.0 0.23 11.8 0.0 1.4 1 1 0 1 1 1 0 Sigma factor regulator N-terminal Biotin_lipoyl PF00364.22 gi|240104085|ref|YP_002960394.1| - 1.6e-25 88.7 1.5 3.2e-25 87.8 1.5 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|240104085|ref|YP_002960394.1| - 1.1e-17 63.5 0.1 7.6e-08 32.1 0.0 3.0 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|240104085|ref|YP_002960394.1| - 7.3e-08 33.1 0.6 0.0039 17.9 0.0 3.0 3 1 0 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|240104085|ref|YP_002960394.1| - 4.4e-06 26.1 0.1 0.043 13.0 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 gi|240104085|ref|YP_002960394.1| - 9.6e-05 22.1 0.4 0.14 11.9 0.0 2.7 2 1 1 3 3 3 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 gi|240104085|ref|YP_002960394.1| - 0.0041 17.0 2.7 0.042 13.8 0.1 2.8 1 1 2 3 3 3 1 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 gi|240104085|ref|YP_002960394.1| - 0.019 14.9 0.1 0.029 14.3 0.1 1.4 1 0 0 1 1 1 0 Glycine cleavage H-protein NQRA PF05896.11 gi|240104085|ref|YP_002960394.1| - 0.019 14.4 0.4 0.33 10.3 0.2 2.1 1 1 1 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) YqfD PF06898.11 gi|240104085|ref|YP_002960394.1| - 0.028 13.2 4.7 0.11 11.2 0.2 2.4 2 1 1 3 3 3 0 Putative stage IV sporulation protein YqfD Peptidase_M23 PF01551.22 gi|240104085|ref|YP_002960394.1| - 0.086 13.1 3.3 19 5.6 0.1 3.5 2 1 0 2 2 2 0 Peptidase family M23 DEC-1_N PF04625.13 gi|240104085|ref|YP_002960394.1| - 0.86 8.6 9.2 1 8.3 9.2 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region DUF5525 PF17663.1 gi|240104085|ref|YP_002960394.1| - 1.1 7.3 11.6 1.3 7.0 11.6 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5525) OAD_beta PF03977.13 gi|240104086|ref|YP_002960395.1| - 3.3e-157 522.9 30.7 3.7e-157 522.8 30.7 1.0 1 0 0 1 1 1 1 Na+-transporting oxaloacetate decarboxylase beta subunit TMEM40 PF15817.5 gi|240104086|ref|YP_002960395.1| - 0.041 13.6 0.0 0.041 13.6 0.0 2.2 3 0 0 3 3 3 0 Transmembrane protein 40 family CBS PF00571.28 gi|240104087|ref|YP_002960396.1| - 1.2e-43 147.3 12.0 7.7e-13 48.7 0.5 4.3 4 0 0 4 4 4 4 CBS domain sCache_3_2 PF17203.4 gi|240104087|ref|YP_002960396.1| - 0.0089 16.2 1.5 38 4.4 0.0 3.9 4 0 0 4 4 4 0 Single cache domain 3 IF3_N PF05198.16 gi|240104087|ref|YP_002960396.1| - 0.079 13.2 6.5 0.91 9.8 0.2 3.9 3 1 1 4 4 4 0 Translation initiation factor IF-3, N-terminal domain HTHP PF11534.8 gi|240104087|ref|YP_002960396.1| - 0.15 12.5 0.1 2.4 8.6 0.1 2.3 2 0 0 2 2 2 0 Hexameric tyrosine-coordinated heme protein (HTHP) DUF3659 PF12396.8 gi|240104087|ref|YP_002960396.1| - 3.1 7.8 9.8 3 7.8 1.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) Homoserine_dh PF00742.19 gi|240104088|ref|YP_002960397.1| - 5.4e-46 156.7 0.3 7.3e-46 156.2 0.3 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|240104088|ref|YP_002960397.1| - 4.2e-10 40.3 0.0 1.9e-09 38.2 0.0 2.1 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|240104088|ref|YP_002960397.1| - 8.3e-06 25.7 0.0 2e-05 24.4 0.0 1.6 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Gp_dh_N PF00044.24 gi|240104088|ref|YP_002960397.1| - 0.012 15.9 1.1 0.043 14.2 0.1 2.4 3 0 0 3 3 3 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|240104088|ref|YP_002960397.1| - 0.021 14.9 1.7 0.9 9.7 0.2 3.1 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Pinin_SDK_memA PF04696.13 gi|240104088|ref|YP_002960397.1| - 0.22 11.6 0.0 0.37 10.9 0.0 1.3 1 0 0 1 1 1 0 pinin/SDK/memA/ protein conserved region ASCH PF04266.14 gi|240104089|ref|YP_002960398.1| - 2.4e-07 31.3 0.0 4.4e-07 30.4 0.0 1.5 1 1 0 1 1 1 1 ASCH domain zf-ZPR1 PF03367.13 gi|240104090|ref|YP_002960399.1| - 2.9e-39 134.5 0.0 3.6e-39 134.2 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|240104090|ref|YP_002960399.1| - 3.2e-05 24.2 0.1 6.3e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|240104090|ref|YP_002960399.1| - 0.051 13.1 1.2 0.24 11.0 1.2 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.12 gi|240104090|ref|YP_002960399.1| - 0.09 13.1 2.3 0.64 10.4 2.3 2.1 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase PhnA_Zn_Ribbon PF08274.12 gi|240104090|ref|YP_002960399.1| - 0.1 12.6 0.2 0.2 11.6 0.2 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Rubredoxin_2 PF18073.1 gi|240104090|ref|YP_002960399.1| - 0.17 11.7 0.2 21 4.9 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain SepF PF04472.12 gi|240104091|ref|YP_002960400.1| - 2.8e-15 56.3 0.2 4.1e-15 55.8 0.2 1.3 1 0 0 1 1 1 1 Cell division protein SepF OAD_gamma PF04277.13 gi|240104091|ref|YP_002960400.1| - 0.039 14.6 0.6 0.05 14.2 0.6 1.3 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain RNase_PH PF01138.21 gi|240104092|ref|YP_002960401.1| - 1.1e-29 103.6 0.0 1.7e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|240104092|ref|YP_002960401.1| - 1.2e-15 57.2 0.0 3.3e-15 55.9 0.0 1.8 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|240104093|ref|YP_002960402.1| - 7.9e-35 120.2 0.0 1.2e-34 119.7 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|240104093|ref|YP_002960402.1| - 4.7e-17 61.8 0.4 8.6e-17 60.9 0.4 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 EF-hand_1 PF00036.32 gi|240104093|ref|YP_002960402.1| - 0.12 12.0 0.0 0.43 10.3 0.0 2.0 1 0 0 1 1 1 0 EF hand KH_6 PF15985.5 gi|240104094|ref|YP_002960403.1| - 4.4e-09 36.5 0.7 1e-08 35.4 0.7 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|240104094|ref|YP_002960403.1| - 1.5e-07 31.2 0.2 3.8e-07 29.8 0.2 1.8 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|240104094|ref|YP_002960403.1| - 3.3e-07 30.0 1.2 5.6e-07 29.3 0.2 1.8 2 0 0 2 2 2 1 KH domain ECR1_N PF14382.6 gi|240104094|ref|YP_002960403.1| - 1.3e-06 28.1 0.1 3e-06 26.9 0.1 1.7 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region SBDS PF01172.18 gi|240104095|ref|YP_002960404.1| - 4.9e-26 90.6 0.0 8.3e-26 89.9 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|240104095|ref|YP_002960404.1| - 8.3e-18 64.5 0.0 1.3e-17 63.9 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|240104095|ref|YP_002960404.1| - 0.02 14.9 0.0 0.042 13.9 0.0 1.5 1 0 0 1 1 1 0 Elongation factor G C-terminus HpaB PF03241.13 gi|240104095|ref|YP_002960404.1| - 0.088 11.9 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal Proteasome PF00227.26 gi|240104096|ref|YP_002960405.1| - 3e-64 216.0 1.0 4.3e-64 215.5 0.0 1.6 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|240104096|ref|YP_002960405.1| - 1.3e-12 47.1 0.3 4.3e-12 45.5 0.1 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature PrgI PF12666.7 gi|240104097|ref|YP_002960406.1| - 0.014 16.1 0.5 0.016 15.9 0.5 1.1 1 0 0 1 1 1 0 PrgI family protein E1-E2_ATPase PF00122.20 gi|240104097|ref|YP_002960406.1| - 0.084 12.4 0.7 0.089 12.3 0.7 1.1 1 0 0 1 1 1 0 E1-E2 ATPase HIT PF01230.23 gi|240104098|ref|YP_002960407.1| - 3.2e-25 88.7 0.0 4.8e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|240104098|ref|YP_002960407.1| - 1.4e-15 57.8 0.0 2.4e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|240104098|ref|YP_002960407.1| - 0.0055 16.6 0.0 0.009 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Radical_SAM PF04055.21 gi|240104098|ref|YP_002960407.1| - 0.12 12.8 0.2 0.19 12.1 0.2 1.6 1 1 0 1 1 1 0 Radical SAM superfamily POR PF01558.18 gi|240104099|ref|YP_002960408.1| - 6.4e-34 117.5 0.0 7.4e-34 117.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Methyltransf_25 PF13649.6 gi|240104100|ref|YP_002960409.1| - 3e-27 95.2 0.0 4.8e-27 94.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|240104100|ref|YP_002960409.1| - 4.5e-26 91.3 0.0 6.6e-26 90.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|240104100|ref|YP_002960409.1| - 9.4e-22 77.4 0.0 1.1e-21 77.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|240104100|ref|YP_002960409.1| - 7.2e-18 64.8 0.0 1.1e-17 64.2 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|240104100|ref|YP_002960409.1| - 1.5e-16 60.7 0.0 1.7e-16 60.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|240104100|ref|YP_002960409.1| - 8.5e-14 52.1 0.0 1.3e-13 51.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|240104100|ref|YP_002960409.1| - 4.3e-08 32.9 0.0 7.9e-08 32.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|240104100|ref|YP_002960409.1| - 6.1e-08 32.3 0.0 8.4e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.12 gi|240104100|ref|YP_002960409.1| - 2.2e-06 27.4 0.0 3.2e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|240104100|ref|YP_002960409.1| - 1.2e-05 24.1 0.0 1.6e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.20 gi|240104100|ref|YP_002960409.1| - 4.5e-05 22.9 0.0 5.1e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|240104100|ref|YP_002960409.1| - 5.9e-05 23.0 0.0 0.00076 19.4 0.0 2.3 1 1 0 1 1 1 1 Hypothetical methyltransferase FtsJ PF01728.19 gi|240104100|ref|YP_002960409.1| - 0.00013 22.1 0.0 0.00056 20.1 0.0 1.9 1 1 0 1 1 1 1 FtsJ-like methyltransferase NodS PF05401.11 gi|240104100|ref|YP_002960409.1| - 0.00038 20.1 0.0 0.00047 19.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|240104100|ref|YP_002960409.1| - 0.0019 17.2 0.0 0.0028 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 gi|240104100|ref|YP_002960409.1| - 0.0024 17.9 0.0 0.0035 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|240104100|ref|YP_002960409.1| - 0.014 14.8 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) UPF0052 PF01933.18 gi|240104100|ref|YP_002960409.1| - 0.016 14.5 0.0 0.022 14.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0052 N2227 PF07942.12 gi|240104100|ref|YP_002960409.1| - 0.024 13.8 0.0 0.038 13.2 0.0 1.3 1 0 0 1 1 1 0 N2227-like protein CheR PF01739.18 gi|240104100|ref|YP_002960409.1| - 0.042 13.3 0.0 0.37 10.2 0.0 2.2 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain PCMT PF01135.19 gi|240104100|ref|YP_002960409.1| - 0.095 12.4 0.0 0.23 11.2 0.0 1.7 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Bin3 PF06859.12 gi|240104100|ref|YP_002960409.1| - 0.1 13.2 0.0 0.23 12.1 0.0 1.7 1 1 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) tRNA-synt_1f PF01921.18 gi|240104101|ref|YP_002960410.1| - 2.7e-139 464.1 1.2 2.7e-139 464.1 1.2 1.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|240104101|ref|YP_002960410.1| - 3.7e-07 29.2 0.9 0.0089 14.8 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|240104101|ref|YP_002960410.1| - 4.1e-05 23.1 0.0 0.16 11.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain HypA PF01155.19 gi|240104101|ref|YP_002960410.1| - 0.0053 16.8 0.0 0.013 15.5 0.0 1.7 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA tRNA-synt_1b PF00579.25 gi|240104101|ref|YP_002960410.1| - 0.0077 15.6 0.0 0.47 9.7 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (W and Y) zinc_ribbon_10 PF10058.9 gi|240104101|ref|YP_002960410.1| - 0.034 13.9 0.5 0.069 12.9 0.5 1.4 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-LITAF-like PF10601.9 gi|240104101|ref|YP_002960410.1| - 0.083 13.2 0.2 17 5.7 0.0 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain ribosomal_L24 PF17136.4 gi|240104101|ref|YP_002960410.1| - 0.098 13.1 0.6 0.89 10.0 0.1 2.4 2 0 0 2 2 2 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 Zn_Tnp_IS1595 PF12760.7 gi|240104101|ref|YP_002960410.1| - 0.2 11.7 3.0 0.45 10.5 3.0 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain PhoD PF09423.10 gi|240104101|ref|YP_002960410.1| - 0.5 9.3 2.2 3.6 6.5 0.3 2.1 2 0 0 2 2 2 0 PhoD-like phosphatase zinc_ribbon_2 PF13240.6 gi|240104101|ref|YP_002960410.1| - 0.55 10.0 2.7 22 4.9 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|240104101|ref|YP_002960410.1| - 3.7 7.4 4.9 1.4 8.8 1.8 1.9 2 0 0 2 2 2 0 zinc-ribbon domain DUF366 PF04017.12 gi|240104104|ref|YP_002960413.1| - 8.7e-68 227.4 0.6 9.5e-68 227.3 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) BPL_LplA_LipB PF03099.19 gi|240104104|ref|YP_002960413.1| - 0.085 12.8 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family Peptidase_C92 PF05708.12 gi|240104104|ref|YP_002960413.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family NIF PF03031.18 gi|240104105|ref|YP_002960414.1| - 6.3e-07 29.3 0.0 1e-06 28.6 0.0 1.4 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Acid_PPase PF12689.7 gi|240104105|ref|YP_002960414.1| - 2.2e-06 27.6 0.0 5.4e-06 26.4 0.0 1.7 1 1 0 1 1 1 1 Acid Phosphatase HAD_2 PF13419.6 gi|240104105|ref|YP_002960414.1| - 1.3e-05 25.3 0.0 0.0019 18.3 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|240104105|ref|YP_002960414.1| - 0.0003 21.3 0.7 0.076 13.4 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|240104105|ref|YP_002960414.1| - 0.00039 20.0 0.5 0.0023 17.5 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2608) Hydrolase PF00702.26 gi|240104105|ref|YP_002960414.1| - 0.014 15.7 0.0 0.38 11.0 0.0 2.1 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Rx_N PF18052.1 gi|240104105|ref|YP_002960414.1| - 0.075 13.3 0.0 1.5 9.1 0.0 2.3 2 0 0 2 2 2 0 Rx N-terminal domain Pribosyltran_N PF13793.6 gi|240104106|ref|YP_002960415.1| - 4.7e-22 78.1 0.0 2.8e-18 66.0 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|240104106|ref|YP_002960415.1| - 4e-20 71.9 1.0 3.6e-18 65.6 0.5 2.2 2 0 0 2 2 2 2 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|240104106|ref|YP_002960415.1| - 1.4e-15 57.8 0.3 2.3e-15 57.1 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|240104106|ref|YP_002960415.1| - 9.8e-07 28.4 0.1 2e-06 27.4 0.1 1.5 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|240104106|ref|YP_002960415.1| - 0.017 14.6 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF1614 PF07758.11 gi|240104107|ref|YP_002960416.1| - 1e-55 188.4 11.4 1e-55 188.4 11.4 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) ASCH PF04266.14 gi|240104108|ref|YP_002960417.1| - 9e-12 45.5 0.0 1.1e-11 45.2 0.0 1.1 1 0 0 1 1 1 1 ASCH domain Proteasome PF00227.26 gi|240104109|ref|YP_002960418.1| - 3.7e-53 179.9 0.6 4.2e-53 179.7 0.6 1.0 1 0 0 1 1 1 1 Proteasome subunit Peptidase_S58 PF03576.14 gi|240104109|ref|YP_002960418.1| - 0.035 13.6 0.6 0.066 12.7 0.3 1.6 2 0 0 2 2 2 0 Peptidase family S58 TSNR_N PF04705.12 gi|240104109|ref|YP_002960418.1| - 0.09 12.9 0.1 0.17 12.0 0.1 1.4 1 0 0 1 1 1 0 Thiostrepton-resistance methylase, N terminus ABC_tran PF00005.27 gi|240104110|ref|YP_002960419.1| - 1e-28 100.6 0.0 1.4e-28 100.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|240104110|ref|YP_002960419.1| - 8.7e-13 48.7 0.7 6.4e-07 29.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|240104110|ref|YP_002960419.1| - 3.9e-08 33.0 0.2 2.2e-05 24.0 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|240104110|ref|YP_002960419.1| - 1.7e-05 25.4 0.0 2.9e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|240104110|ref|YP_002960419.1| - 1.9e-05 24.3 0.0 3.5e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|240104110|ref|YP_002960419.1| - 0.00022 21.5 0.1 0.00091 19.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|240104110|ref|YP_002960419.1| - 0.00048 20.6 0.0 0.00092 19.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|240104110|ref|YP_002960419.1| - 0.00049 20.1 0.0 0.00086 19.3 0.0 1.4 1 1 0 1 1 1 1 Rad17 P-loop domain ABC_ATPase PF09818.9 gi|240104110|ref|YP_002960419.1| - 0.0023 16.8 0.1 0.14 10.9 0.1 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|240104110|ref|YP_002960419.1| - 0.0027 17.3 0.0 0.0058 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|240104110|ref|YP_002960419.1| - 0.011 15.5 0.1 0.052 13.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|240104110|ref|YP_002960419.1| - 0.012 15.8 0.1 0.22 11.7 0.1 2.7 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|240104110|ref|YP_002960419.1| - 0.013 15.3 0.0 0.021 14.5 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.6 gi|240104110|ref|YP_002960419.1| - 0.016 15.4 0.0 0.18 12.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|240104110|ref|YP_002960419.1| - 0.019 14.3 0.5 0.068 12.5 0.1 1.9 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|240104110|ref|YP_002960419.1| - 0.028 14.3 0.1 0.05 13.5 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase NTPase_1 PF03266.15 gi|240104110|ref|YP_002960419.1| - 0.037 13.9 0.0 0.46 10.4 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_19 PF13245.6 gi|240104110|ref|YP_002960419.1| - 0.057 13.8 0.0 0.11 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|240104110|ref|YP_002960419.1| - 0.057 13.8 0.0 0.11 12.9 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|240104110|ref|YP_002960419.1| - 0.063 11.9 0.0 3.7 6.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|240104110|ref|YP_002960419.1| - 0.067 13.1 0.4 0.13 12.2 0.1 1.7 2 1 0 2 2 2 0 NACHT domain Thioredoxin_13 PF18401.1 gi|240104110|ref|YP_002960419.1| - 0.15 12.0 0.1 0.25 11.3 0.1 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain MMR_HSR1 PF01926.23 gi|240104110|ref|YP_002960419.1| - 0.21 11.7 0.1 0.5 10.5 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase FecCD PF01032.18 gi|240104111|ref|YP_002960420.1| - 3.2e-86 289.2 23.3 4e-86 288.9 23.3 1.0 1 0 0 1 1 1 1 FecCD transport family Acetyltransf_1 PF00583.25 gi|240104112|ref|YP_002960421.1| - 9.6e-28 96.8 0.3 1.2e-27 96.4 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|240104112|ref|YP_002960421.1| - 1e-17 64.3 0.1 1.6e-17 63.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|240104112|ref|YP_002960421.1| - 6.6e-16 58.4 0.0 7.9e-16 58.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|240104112|ref|YP_002960421.1| - 5.5e-10 39.1 0.1 9.1e-10 38.4 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|240104112|ref|YP_002960421.1| - 3.7e-09 36.4 0.1 1.8e-08 34.2 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|240104112|ref|YP_002960421.1| - 4.9e-09 36.5 0.0 5.7e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|240104112|ref|YP_002960421.1| - 3.9e-08 33.4 0.0 1.1e-06 28.7 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|240104112|ref|YP_002960421.1| - 1.6e-05 25.1 0.0 2.4e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|240104112|ref|YP_002960421.1| - 2.5e-05 24.9 0.0 3.2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|240104112|ref|YP_002960421.1| - 0.0002 21.4 0.0 0.00032 20.8 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|240104112|ref|YP_002960421.1| - 0.00042 20.0 0.0 0.00055 19.6 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_15 PF17013.5 gi|240104112|ref|YP_002960421.1| - 0.0048 16.4 0.0 0.0092 15.5 0.0 1.4 1 1 0 1 1 1 1 Putative acetyl-transferase PanZ PF12568.8 gi|240104112|ref|YP_002960421.1| - 0.019 14.7 0.1 0.022 14.5 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ tRNA_int_endo PF01974.17 gi|240104113|ref|YP_002960422.1| - 1.4e-32 111.6 0.2 2e-32 111.1 0.2 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|240104113|ref|YP_002960422.1| - 9.9e-21 73.2 0.5 9.9e-21 73.2 0.5 1.7 2 0 0 2 2 2 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|240104113|ref|YP_002960422.1| - 0.00054 20.1 0.3 0.0024 18.0 0.0 2.2 3 0 0 3 3 3 1 tRNA-splicing endonuclease subunit sen54 N-term Sen15 PF09631.10 gi|240104113|ref|YP_002960422.1| - 0.022 15.1 0.0 0.037 14.3 0.0 1.5 1 1 0 1 1 1 0 Sen15 protein DUF2182 PF09948.9 gi|240104114|ref|YP_002960423.1| - 0.73 9.7 5.9 6.8 6.5 1.4 2.3 1 1 0 2 2 2 0 Predicted metal-binding integral membrane protein (DUF2182) NADH_B2 PF14813.6 gi|240104114|ref|YP_002960423.1| - 4.9 7.0 7.1 0.19 11.6 1.1 1.6 2 0 0 2 2 2 0 NADH dehydrogenase 1 beta subcomplex subunit 2 DUF835 PF05763.12 gi|240104116|ref|YP_002960425.1| - 4e-35 120.5 0.0 6.1e-35 119.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) ECSCR PF15820.5 gi|240104116|ref|YP_002960425.1| - 0.1 12.4 0.8 0.24 11.3 0.8 1.6 1 0 0 1 1 1 0 Endothelial cell-specific chemotaxis regulator Aminotran_1_2 PF00155.21 gi|240104117|ref|YP_002960426.1| - 5.5e-70 236.3 0.0 6.4e-70 236.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|240104117|ref|YP_002960426.1| - 6.4e-05 21.7 0.0 9.9e-05 21.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|240104117|ref|YP_002960426.1| - 0.00029 20.2 0.0 0.00047 19.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|240104117|ref|YP_002960426.1| - 0.00048 19.2 0.0 0.00092 18.3 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|240104117|ref|YP_002960426.1| - 0.023 14.0 0.0 0.22 10.8 0.0 2.1 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family YdjM PF04307.14 gi|240104118|ref|YP_002960427.1| - 2.2e-10 40.1 6.7 1.1e-09 37.9 6.7 1.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|240104118|ref|YP_002960427.1| - 0.00059 19.9 0.9 0.0015 18.6 0.9 1.5 1 1 0 1 1 1 1 Zinc dependent phospholipase C DUF4184 PF13803.6 gi|240104118|ref|YP_002960427.1| - 0.21 11.3 3.9 0.33 10.6 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4184) Rep_fac_C PF08542.11 gi|240104119|ref|YP_002960428.1| - 5e-22 78.1 0.1 9.9e-22 77.2 0.1 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|240104119|ref|YP_002960428.1| - 4.9e-19 69.1 0.0 1.1e-18 67.9 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|240104119|ref|YP_002960428.1| - 3.6e-17 62.6 0.0 7.7e-14 51.8 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|240104119|ref|YP_002960428.1| - 1.8e-09 37.6 0.1 4e-07 29.9 0.0 3.1 3 1 1 4 4 4 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|240104119|ref|YP_002960428.1| - 2.6e-07 31.2 0.6 7e-05 23.3 0.0 2.5 2 1 1 3 3 3 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|240104119|ref|YP_002960428.1| - 1.6e-06 27.6 0.1 0.00084 18.8 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|240104119|ref|YP_002960428.1| - 6.3e-06 26.2 0.0 2e-05 24.6 0.0 1.7 2 1 0 2 2 1 1 Rad17 P-loop domain DNA_pol3_delta PF06144.13 gi|240104119|ref|YP_002960428.1| - 7.9e-06 25.7 0.0 1.6e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_14 PF13173.6 gi|240104119|ref|YP_002960428.1| - 1.3e-05 25.2 0.0 2.5e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|240104119|ref|YP_002960428.1| - 2.4e-05 24.6 0.2 6.9e-05 23.1 0.2 1.9 1 0 0 1 1 1 1 AAA C-terminal domain ResIII PF04851.15 gi|240104119|ref|YP_002960428.1| - 4.5e-05 23.5 0.0 0.0029 17.6 0.0 2.5 2 1 1 3 3 2 1 Type III restriction enzyme, res subunit AAA_18 PF13238.6 gi|240104119|ref|YP_002960428.1| - 0.00012 22.6 0.0 0.00067 20.2 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|240104119|ref|YP_002960428.1| - 0.00018 21.8 0.1 0.46 10.7 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|240104119|ref|YP_002960428.1| - 0.00018 21.3 0.0 0.00038 20.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|240104119|ref|YP_002960428.1| - 0.00059 19.8 0.0 0.0024 17.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|240104119|ref|YP_002960428.1| - 0.00064 19.5 0.0 0.0015 18.3 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|240104119|ref|YP_002960428.1| - 0.00091 18.5 0.0 0.0023 17.2 0.0 1.7 1 1 0 1 1 1 1 TIP49 P-loop domain AAA_24 PF13479.6 gi|240104119|ref|YP_002960428.1| - 0.0026 17.5 0.0 0.0054 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|240104119|ref|YP_002960428.1| - 0.0037 16.9 0.1 0.027 14.0 0.0 2.2 2 1 1 3 3 3 1 AAA domain AAA_7 PF12775.7 gi|240104119|ref|YP_002960428.1| - 0.005 16.4 0.0 0.0084 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_11 PF13086.6 gi|240104119|ref|YP_002960428.1| - 0.0067 16.2 0.0 0.011 15.6 0.0 1.3 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|240104119|ref|YP_002960428.1| - 0.0088 15.8 0.0 0.91 9.2 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 gi|240104119|ref|YP_002960428.1| - 0.014 15.6 0.0 0.045 13.9 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_2 PF07724.14 gi|240104119|ref|YP_002960428.1| - 0.018 15.2 0.0 0.046 13.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) PhoH PF02562.16 gi|240104119|ref|YP_002960428.1| - 0.034 13.6 0.1 0.3 10.5 0.0 2.1 1 1 1 2 2 2 0 PhoH-like protein AAA_28 PF13521.6 gi|240104119|ref|YP_002960428.1| - 0.042 14.1 0.0 0.11 12.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|240104119|ref|YP_002960428.1| - 0.052 12.7 0.0 0.084 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|240104119|ref|YP_002960428.1| - 0.078 12.2 0.0 0.23 10.7 0.0 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TPR_7 PF13176.6 gi|240104119|ref|YP_002960428.1| - 0.085 12.9 0.1 0.24 11.5 0.1 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat TniB PF05621.11 gi|240104119|ref|YP_002960428.1| - 0.087 12.2 0.0 0.43 10.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial TniB protein AAA_33 PF13671.6 gi|240104119|ref|YP_002960428.1| - 0.091 12.9 0.0 0.2 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|240104119|ref|YP_002960428.1| - 0.11 12.9 0.0 0.26 11.7 0.0 1.6 2 0 0 2 2 1 0 RNA helicase DUF3400 PF11880.8 gi|240104119|ref|YP_002960428.1| - 0.12 11.9 0.0 0.29 10.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) Viral_helicase1 PF01443.18 gi|240104119|ref|YP_002960428.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MeaB PF03308.16 gi|240104119|ref|YP_002960428.1| - 0.13 11.3 0.1 0.78 8.7 0.0 2.0 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB TPR_2 PF07719.17 gi|240104119|ref|YP_002960428.1| - 0.21 11.8 0.7 1.5 9.1 0.3 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|240104119|ref|YP_002960428.1| - 0.34 11.8 0.1 0.34 11.8 0.1 2.8 4 0 0 4 4 1 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|240104119|ref|YP_002960428.1| - 0.76 10.5 4.2 0.59 10.8 1.2 2.4 4 0 0 4 4 1 0 Tetratricopeptide repeat AAA PF00004.29 gi|240104120|ref|YP_002960429.1| - 8.5e-17 61.8 0.0 3.3e-16 59.9 0.0 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|240104120|ref|YP_002960429.1| - 1.1e-13 51.5 0.0 1.5e-12 47.8 0.0 2.3 2 1 0 2 2 2 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|240104120|ref|YP_002960429.1| - 8.7e-09 35.5 0.0 2.1e-08 34.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|240104120|ref|YP_002960429.1| - 3.5e-07 30.1 0.0 7e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|240104120|ref|YP_002960429.1| - 4.2e-07 30.3 0.4 0.0023 18.2 0.0 3.6 2 1 1 4 4 4 2 AAA domain AAA_5 PF07728.14 gi|240104120|ref|YP_002960429.1| - 3.1e-06 27.2 0.0 3.5e-05 23.8 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|240104120|ref|YP_002960429.1| - 8.7e-06 26.2 0.9 5.6e-05 23.6 0.1 2.9 2 1 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.13 gi|240104120|ref|YP_002960429.1| - 0.00013 21.2 0.0 0.00052 19.3 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_11 PF13086.6 gi|240104120|ref|YP_002960429.1| - 0.00018 21.4 2.9 0.094 12.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.13 gi|240104120|ref|YP_002960429.1| - 0.00022 21.0 0.4 0.0018 18.0 0.0 2.6 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA_18 PF13238.6 gi|240104120|ref|YP_002960429.1| - 0.00073 20.1 0.0 0.0025 18.4 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|240104120|ref|YP_002960429.1| - 0.00096 18.8 0.1 0.0041 16.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|240104120|ref|YP_002960429.1| - 0.0017 18.8 0.0 0.0017 18.8 0.0 2.8 2 2 0 3 3 1 1 AAA domain AAA_6 PF12774.7 gi|240104120|ref|YP_002960429.1| - 0.0018 17.3 0.0 0.004 16.2 0.0 1.5 1 0 0 1 1 1 1 Hydrolytic ATP binding site of dynein motor region Zeta_toxin PF06414.12 gi|240104120|ref|YP_002960429.1| - 0.0021 17.4 0.0 0.0071 15.6 0.0 1.9 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|240104120|ref|YP_002960429.1| - 0.0028 17.4 0.0 0.0067 16.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|240104120|ref|YP_002960429.1| - 0.0028 17.9 0.0 0.0098 16.2 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|240104120|ref|YP_002960429.1| - 0.0033 17.6 0.0 0.009 16.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|240104120|ref|YP_002960429.1| - 0.0079 16.5 0.5 0.022 15.1 0.1 2.0 2 0 0 2 2 1 1 AAA C-terminal domain AAA_24 PF13479.6 gi|240104120|ref|YP_002960429.1| - 0.0095 15.7 0.0 0.022 14.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|240104120|ref|YP_002960429.1| - 0.012 15.6 0.0 0.12 12.4 0.0 2.3 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_2 PF07724.14 gi|240104120|ref|YP_002960429.1| - 0.013 15.6 0.1 0.072 13.2 0.0 2.2 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) T2SSE PF00437.20 gi|240104120|ref|YP_002960429.1| - 0.018 14.1 0.0 0.048 12.7 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|240104120|ref|YP_002960429.1| - 0.021 15.1 4.6 0.34 11.2 0.3 3.6 3 1 1 4 4 4 0 AAA domain HrcA_DNA-bdg PF03444.15 gi|240104120|ref|YP_002960429.1| - 0.026 14.2 0.5 0.08 12.6 0.1 2.0 2 0 0 2 2 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TsaE PF02367.17 gi|240104120|ref|YP_002960429.1| - 0.043 13.8 0.0 0.09 12.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|240104120|ref|YP_002960429.1| - 0.044 13.3 0.0 0.081 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|240104120|ref|YP_002960429.1| - 0.053 13.3 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|240104120|ref|YP_002960429.1| - 0.083 12.8 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase RNA_helicase PF00910.22 gi|240104120|ref|YP_002960429.1| - 0.088 13.2 0.0 0.25 11.7 0.0 1.9 1 0 0 1 1 1 0 RNA helicase PPV_E1_C PF00519.17 gi|240104120|ref|YP_002960429.1| - 0.096 11.5 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase PIN PF01850.21 gi|240104120|ref|YP_002960429.1| - 0.11 13.0 2.7 0.41 11.2 0.3 3.0 3 0 0 3 3 2 0 PIN domain Hydin_ADK PF17213.3 gi|240104120|ref|YP_002960429.1| - 0.72 10.1 0.0 0.72 10.1 0.0 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain AAA_14 PF13173.6 gi|240104121|ref|YP_002960430.1| - 1.4e-31 109.2 0.0 2.5e-31 108.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|240104121|ref|YP_002960430.1| - 7.7e-10 39.0 0.0 1.5e-09 38.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_22 PF13401.6 gi|240104121|ref|YP_002960430.1| - 0.0013 19.0 0.0 0.56 10.5 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|240104121|ref|YP_002960430.1| - 0.019 15.4 0.2 0.067 13.6 0.1 2.0 2 1 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|240104121|ref|YP_002960430.1| - 0.073 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|240104121|ref|YP_002960430.1| - 0.1 12.5 0.0 17 5.2 0.0 2.5 1 1 0 2 2 2 0 ATPase domain predominantly from Archaea DUF86 PF01934.17 gi|240104122|ref|YP_002960431.1| - 2.5e-33 114.5 1.0 2.8e-33 114.3 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 KxDL PF10241.9 gi|240104122|ref|YP_002960431.1| - 0.025 14.8 0.0 0.19 12.0 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein NTP_transf_2 PF01909.23 gi|240104123|ref|YP_002960432.1| - 2.7e-18 66.1 0.3 3.1e-18 65.8 0.3 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|240104123|ref|YP_002960432.1| - 4.8e-15 55.4 0.0 5.9e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Met_10 PF02475.16 gi|240104124|ref|YP_002960433.1| - 2.6e-36 125.2 0.0 3.8e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|240104124|ref|YP_002960433.1| - 4.6e-13 48.8 1.4 4.6e-13 48.8 1.4 2.8 3 0 0 3 3 3 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_3 PF01596.17 gi|240104124|ref|YP_002960433.1| - 5e-05 22.6 0.0 8.7e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_25 PF13649.6 gi|240104124|ref|YP_002960433.1| - 0.019 15.6 0.0 0.051 14.3 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain TrmK PF04816.12 gi|240104124|ref|YP_002960433.1| - 0.036 13.6 0.0 0.084 12.4 0.0 1.5 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase Radical_SAM PF04055.21 gi|240104125|ref|YP_002960434.1| - 7.4e-33 114.3 0.1 1.6e-32 113.2 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|240104125|ref|YP_002960434.1| - 4.4e-22 78.4 0.1 7.2e-22 77.7 0.1 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|240104125|ref|YP_002960434.1| - 1.4e-11 44.8 0.0 2.8e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|240104125|ref|YP_002960434.1| - 7.4e-08 32.5 0.0 1.4e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cep57_MT_bd PF06657.13 gi|240104126|ref|YP_002960435.1| - 0.026 15.0 1.7 0.045 14.2 0.3 2.1 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF402 PF04167.13 gi|240104127|ref|YP_002960436.1| - 3.7e-14 52.7 3.7 3.7e-14 52.7 3.7 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|240104127|ref|YP_002960436.1| - 4.6e-12 45.9 0.0 7.2e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family MORN_2 PF07661.13 gi|240104127|ref|YP_002960436.1| - 0.87 10.0 3.9 8.5 7.0 0.5 3.4 3 0 0 3 3 3 0 MORN repeat variant PIN PF01850.21 gi|240104128|ref|YP_002960437.1| - 6.2e-20 71.9 0.1 7.4e-20 71.7 0.1 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|240104128|ref|YP_002960437.1| - 4.1e-07 30.3 0.0 5.2e-06 26.8 0.0 1.9 1 1 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|240104128|ref|YP_002960437.1| - 8.6e-05 22.8 0.0 0.0002 21.7 0.0 1.6 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|240104128|ref|YP_002960437.1| - 0.053 14.3 0.1 0.096 13.4 0.1 1.7 1 1 0 1 1 1 0 PIN domain SRX PF09201.10 gi|240104128|ref|YP_002960437.1| - 0.084 12.7 0.0 0.13 12.1 0.0 1.4 1 1 0 1 1 1 0 SRX, signal recognition particle receptor alpha subunit MazE_antitoxin PF04014.18 gi|240104129|ref|YP_002960438.1| - 6.8e-15 54.6 0.5 1e-14 54.0 0.5 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|240104129|ref|YP_002960438.1| - 0.00012 22.5 0.0 0.00015 22.1 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin SymE_toxin PF08845.10 gi|240104129|ref|YP_002960438.1| - 0.053 13.6 0.0 0.076 13.1 0.0 1.4 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system Fur_reg_FbpA PF13076.6 gi|240104130|ref|YP_002960439.1| - 0.014 15.1 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Fur-regulated basic protein A Rad51 PF08423.11 gi|240104131|ref|YP_002960440.1| - 1.6e-28 99.6 0.0 2.4e-28 99.1 0.0 1.3 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|240104131|ref|YP_002960440.1| - 4.3e-12 45.9 0.1 1.4e-11 44.2 0.1 1.7 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|240104131|ref|YP_002960440.1| - 2.3e-08 33.8 0.0 6.4e-08 32.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|240104131|ref|YP_002960440.1| - 4.3e-08 33.0 0.0 5.5e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|240104131|ref|YP_002960440.1| - 2e-06 27.7 0.0 3.3e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|240104131|ref|YP_002960440.1| - 0.003 16.9 0.4 1.4 8.2 0.0 2.1 1 1 0 2 2 2 2 DnaB-like helicase C terminal domain PAXNEB PF05625.11 gi|240104131|ref|YP_002960440.1| - 0.081 12.1 0.2 0.11 11.6 0.2 1.3 1 0 0 1 1 1 0 PAXNEB protein Lactamase_B_3 PF13483.6 gi|240104132|ref|YP_002960441.1| - 1.8e-28 99.5 0.0 2.3e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|240104132|ref|YP_002960441.1| - 1.2e-21 77.1 0.0 1.8e-21 76.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|240104132|ref|YP_002960441.1| - 3.7e-12 46.7 1.1 5.9e-12 46.0 1.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF4157 PF13699.6 gi|240104133|ref|YP_002960442.1| - 1e-05 25.7 0.0 2.2e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) PALP PF00291.25 gi|240104134|ref|YP_002960443.1| - 1.8e-68 231.1 0.0 2.1e-68 230.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme LigB PF02900.18 gi|240104136|ref|YP_002960445.1| - 2.1e-14 53.3 0.0 2.4e-14 53.0 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase LPD14 PF18827.1 gi|240104136|ref|YP_002960445.1| - 0.13 12.5 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 14 tRNA_edit PF04073.15 gi|240104138|ref|YP_002960447.1| - 2.3e-15 56.7 0.0 2.8e-15 56.5 0.0 1.0 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain cobW PF02492.19 gi|240104139|ref|YP_002960448.1| - 7.5e-06 25.7 0.0 1.5e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain PTS_IIB PF02302.17 gi|240104139|ref|YP_002960448.1| - 0.00028 21.5 2.2 1.6 9.5 0.0 4.0 4 1 1 5 5 4 2 PTS system, Lactose/Cellobiose specific IIB subunit CbiA PF01656.23 gi|240104139|ref|YP_002960448.1| - 0.0095 16.0 0.9 0.036 14.1 0.7 2.2 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain B12-binding PF02310.19 gi|240104139|ref|YP_002960448.1| - 0.017 15.2 0.1 4 7.5 0.0 3.5 4 0 0 4 4 4 0 B12 binding domain PPK2 PF03976.14 gi|240104139|ref|YP_002960448.1| - 0.022 14.3 0.3 0.064 12.8 0.1 1.9 2 1 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) Glyco_tran_WecB PF03808.13 gi|240104139|ref|YP_002960448.1| - 0.03 14.3 0.0 0.87 9.5 0.0 2.8 2 1 1 3 3 3 0 Glycosyl transferase WecB/TagA/CpsF family SWI2_SNF2 PF18766.1 gi|240104139|ref|YP_002960448.1| - 0.037 13.7 0.0 0.084 12.5 0.0 1.5 1 0 0 1 1 1 0 SWI2/SNF2 ATPase Thymidylate_kin PF02223.17 gi|240104139|ref|YP_002960448.1| - 0.065 12.9 0.1 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 Thymidylate kinase AAA_31 PF13614.6 gi|240104139|ref|YP_002960448.1| - 0.082 12.8 0.5 0.24 11.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain UPF0180 PF03698.13 gi|240104139|ref|YP_002960448.1| - 0.087 13.0 0.1 3.3 8.0 0.0 3.3 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0180) Zeta_toxin PF06414.12 gi|240104139|ref|YP_002960448.1| - 0.092 12.0 0.1 0.17 11.1 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin MipZ PF09140.11 gi|240104139|ref|YP_002960448.1| - 0.11 11.7 0.0 0.28 10.4 0.0 1.7 2 0 0 2 2 2 0 ATPase MipZ DUF2325 PF10087.9 gi|240104139|ref|YP_002960448.1| - 0.14 12.3 0.1 4.8 7.4 0.0 3.0 3 0 0 3 3 2 0 Uncharacterized protein conserved in bacteria (DUF2325) AAA_5 PF07728.14 gi|240104139|ref|YP_002960448.1| - 0.14 12.1 0.0 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ParA PF10609.9 gi|240104139|ref|YP_002960448.1| - 0.16 11.4 0.3 0.27 10.6 0.3 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase GTP-bdg_N PF13167.6 gi|240104139|ref|YP_002960448.1| - 0.16 12.7 0.1 2 9.2 0.0 2.6 3 0 0 3 3 2 0 GTP-binding GTPase N-terminal DUF2179 PF10035.9 gi|240104139|ref|YP_002960448.1| - 0.53 10.1 4.4 6.9 6.5 0.1 3.4 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2179) PLDc_N PF13396.6 gi|240104140|ref|YP_002960449.1| - 8.2e-11 41.7 6.0 8.2e-11 41.7 6.0 2.1 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal DUF805 PF05656.14 gi|240104140|ref|YP_002960449.1| - 0.0012 19.2 0.8 0.0014 19.0 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF805) DUF2157 PF09925.9 gi|240104140|ref|YP_002960449.1| - 0.0028 17.4 1.7 0.003 17.3 1.7 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2157) NicO PF03824.16 gi|240104140|ref|YP_002960449.1| - 0.0039 16.6 0.8 0.0046 16.3 0.8 1.2 1 0 0 1 1 1 1 High-affinity nickel-transport protein Phage_holin_3_6 PF07332.11 gi|240104140|ref|YP_002960449.1| - 0.0065 16.5 0.3 0.0077 16.3 0.3 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF4293 PF14126.6 gi|240104140|ref|YP_002960449.1| - 0.0096 16.2 0.4 0.012 15.9 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4293) LGT PF01790.18 gi|240104140|ref|YP_002960449.1| - 0.0099 15.1 0.6 0.01 15.1 0.6 1.1 1 0 0 1 1 1 1 Prolipoprotein diacylglyceryl transferase DUF2569 PF10754.9 gi|240104140|ref|YP_002960449.1| - 0.014 15.8 1.8 0.017 15.5 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) YbjM PF11045.8 gi|240104140|ref|YP_002960449.1| - 0.028 14.6 2.6 0.034 14.3 2.6 1.1 1 0 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae TssN PF17555.2 gi|240104140|ref|YP_002960449.1| - 0.05 13.0 2.4 0.056 12.8 2.4 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF1003 PF06210.11 gi|240104140|ref|YP_002960449.1| - 0.073 13.2 0.1 0.083 13.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) ABC_export PF16962.5 gi|240104140|ref|YP_002960449.1| - 0.082 11.3 4.7 0.09 11.2 4.7 1.0 1 0 0 1 1 1 0 Putative ABC exporter FixQ PF05545.11 gi|240104140|ref|YP_002960449.1| - 0.094 12.7 0.4 0.094 12.7 0.4 2.9 2 1 1 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ DUF2207 PF09972.9 gi|240104140|ref|YP_002960449.1| - 0.13 11.0 1.6 0.14 10.9 1.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) UPF0182 PF03699.13 gi|240104140|ref|YP_002960449.1| - 0.15 10.1 1.3 0.18 9.9 1.3 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) Rax2 PF12768.7 gi|240104140|ref|YP_002960449.1| - 0.15 11.5 0.5 6.7 6.1 0.0 2.0 2 0 0 2 2 2 0 Cortical protein marker for cell polarity SARAF PF06682.12 gi|240104140|ref|YP_002960449.1| - 0.18 11.4 0.7 1.1 8.8 0.7 1.9 1 1 0 1 1 1 0 SOCE-associated regulatory factor of calcium homoeostasis PGG PF13962.6 gi|240104140|ref|YP_002960449.1| - 0.19 11.5 1.6 0.32 10.8 1.6 1.4 1 1 0 1 1 1 0 Domain of unknown function RseC_MucC PF04246.12 gi|240104140|ref|YP_002960449.1| - 0.42 10.6 1.5 0.5 10.3 1.5 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC UPF0139 PF03669.13 gi|240104140|ref|YP_002960449.1| - 0.75 9.7 3.0 0.92 9.4 3.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0139) DUF4577 PF15145.6 gi|240104140|ref|YP_002960449.1| - 0.81 9.7 2.3 1 9.4 0.6 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4577) Orf78 PF06024.12 gi|240104140|ref|YP_002960449.1| - 3.2 8.1 7.6 2 8.8 0.2 2.1 1 1 1 2 2 2 0 Orf78 (ac78) Tetraspanin PF00335.20 gi|240104140|ref|YP_002960449.1| - 3.7 7.2 6.4 23 4.6 7.6 1.6 1 1 1 2 2 2 0 Tetraspanin family BatA PF07584.11 gi|240104140|ref|YP_002960449.1| - 4.3 7.8 7.5 2.6 8.5 0.7 2.1 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal TMEM251 PF15190.6 gi|240104140|ref|YP_002960449.1| - 5.4 7.0 6.9 1.1 9.3 0.6 2.0 1 1 1 2 2 2 0 Transmembrane protein 251 DUF3368 PF11848.8 gi|240104141|ref|YP_002960450.1| - 3.9e-18 65.0 0.2 6.3e-18 64.3 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) HTH_39 PF14090.6 gi|240104141|ref|YP_002960450.1| - 0.025 14.3 0.0 0.042 13.6 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain UPF0175 PF03683.13 gi|240104142|ref|YP_002960451.1| - 1.8e-23 82.0 0.1 2e-23 81.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) UPF0047 PF01894.17 gi|240104143|ref|YP_002960452.1| - 5e-36 123.4 0.0 5.7e-36 123.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 ThiP_synth PF10120.9 gi|240104144|ref|YP_002960453.1| - 1.5e-47 161.3 0.1 2.4e-47 160.6 0.1 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|240104144|ref|YP_002960453.1| - 4.7e-06 26.6 0.1 3.1e-05 24.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|240104144|ref|YP_002960453.1| - 0.00022 21.5 0.2 0.00073 19.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|240104144|ref|YP_002960453.1| - 0.0035 17.0 0.1 0.055 13.1 0.0 3.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_19 PF12844.7 gi|240104144|ref|YP_002960453.1| - 0.0035 17.3 0.5 0.0078 16.2 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|240104144|ref|YP_002960453.1| - 0.0074 16.2 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) MarR_2 PF12802.7 gi|240104144|ref|YP_002960453.1| - 0.012 15.5 0.0 0.071 13.0 0.0 2.3 1 1 1 2 2 2 0 MarR family DUF1320 PF07030.12 gi|240104144|ref|YP_002960453.1| - 0.018 15.2 0.0 0.03 14.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1320) HTH_23 PF13384.6 gi|240104144|ref|YP_002960453.1| - 0.021 14.6 0.0 0.058 13.2 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain RepB PF07506.11 gi|240104144|ref|YP_002960453.1| - 0.027 14.6 0.0 0.062 13.4 0.0 1.6 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_Crp_2 PF13545.6 gi|240104144|ref|YP_002960453.1| - 0.072 13.1 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Crp PF00325.20 gi|240104144|ref|YP_002960453.1| - 0.08 12.6 0.1 0.25 11.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family YdaS_antitoxin PF15943.5 gi|240104144|ref|YP_002960453.1| - 0.11 12.4 0.0 0.36 10.7 0.0 1.9 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_37 PF13744.6 gi|240104144|ref|YP_002960453.1| - 0.13 12.2 0.0 0.43 10.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain OTCace_N PF02729.21 gi|240104145|ref|YP_002960454.1| - 2.9e-50 170.1 0.0 4.2e-50 169.6 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|240104145|ref|YP_002960454.1| - 9.9e-32 110.2 0.0 1.4e-31 109.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|240104146|ref|YP_002960455.1| - 1e-33 115.5 0.4 1.3e-33 115.1 0.4 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|240104146|ref|YP_002960455.1| - 9.7e-21 73.4 2.1 1.8e-20 72.6 2.1 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain PriA_CRR PF18319.1 gi|240104146|ref|YP_002960455.1| - 0.016 15.2 0.3 0.031 14.3 0.3 1.5 1 0 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain Saf_2TM PF18303.1 gi|240104146|ref|YP_002960455.1| - 0.06 12.9 0.1 0.11 12.1 0.1 1.4 1 1 0 1 1 1 0 SAVED-fused 2TM effector domain AAA_18 PF13238.6 gi|240104148|ref|YP_002960457.1| - 4.9e-18 65.9 0.2 1e-17 64.9 0.1 1.5 1 1 1 2 2 2 1 AAA domain CoaE PF01121.20 gi|240104148|ref|YP_002960457.1| - 1.2e-07 31.6 0.1 0.003 17.3 0.0 2.4 2 0 0 2 2 2 2 Dephospho-CoA kinase AAA_17 PF13207.6 gi|240104148|ref|YP_002960457.1| - 0.00016 22.1 0.6 0.00048 20.6 0.2 2.0 2 1 0 2 2 2 1 AAA domain dNK PF01712.19 gi|240104148|ref|YP_002960457.1| - 0.00016 21.6 0.8 0.33 10.8 0.0 2.3 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_33 PF13671.6 gi|240104148|ref|YP_002960457.1| - 0.00031 20.9 0.1 0.0021 18.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|240104148|ref|YP_002960457.1| - 0.0021 18.2 0.4 0.04 14.0 0.3 2.1 2 0 0 2 2 2 1 Shikimate kinase PRK PF00485.18 gi|240104148|ref|YP_002960457.1| - 0.05 13.3 0.1 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Thymidylate_kin PF02223.17 gi|240104148|ref|YP_002960457.1| - 0.092 12.4 1.1 0.45 10.2 0.5 2.3 2 1 0 2 2 2 0 Thymidylate kinase DUF104 PF01954.16 gi|240104149|ref|YP_002960458.1| - 3.3e-15 56.3 2.9 3.8e-15 56.1 2.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 gi|240104150|ref|YP_002960459.1| - 4.9e-09 36.7 0.0 5.7e-09 36.5 0.0 1.0 1 0 0 1 1 1 1 PIN domain DUF523 PF04463.12 gi|240104151|ref|YP_002960460.1| - 4.4e-06 26.8 0.0 7.2e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF523) PGM_PMM_I PF02878.16 gi|240104152|ref|YP_002960461.1| - 1.3e-44 151.3 0.0 2e-44 150.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|240104152|ref|YP_002960461.1| - 3e-19 69.5 0.0 8.1e-19 68.2 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|240104152|ref|YP_002960461.1| - 3.6e-19 69.0 0.0 7e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|240104152|ref|YP_002960461.1| - 3.7e-09 36.6 0.0 1e-08 35.2 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|240104152|ref|YP_002960461.1| - 0.024 14.8 0.4 0.15 12.2 0.0 2.5 3 0 0 3 3 3 0 Damage-inducible protein CinA KH domain DUF4911 PF16256.5 gi|240104152|ref|YP_002960461.1| - 0.12 12.4 0.4 8.4 6.5 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4911) LT-IIB PF06453.11 gi|240104153|ref|YP_002960462.1| - 0.14 12.0 0.1 2.8 7.8 0.0 2.3 2 0 0 2 2 2 0 Type II heat-labile enterotoxin , B subunit (LT-IIB) Sporozoite_P67 PF05642.11 gi|240104153|ref|YP_002960462.1| - 3.7 5.5 6.1 5.3 5.0 6.1 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen Gmad2 PF10648.9 gi|240104155|ref|YP_002960464.1| - 0.0007 19.8 0.0 0.0013 18.9 0.0 1.4 1 0 0 1 1 1 1 Immunoglobulin-like domain of bacterial spore germination Wzt_C PF14524.6 gi|240104155|ref|YP_002960464.1| - 0.018 15.1 0.2 0.079 13.0 0.1 1.9 1 1 1 2 2 2 0 Wzt C-terminal domain Lipoprotein_18 PF06804.11 gi|240104155|ref|YP_002960464.1| - 0.021 13.9 0.1 0.026 13.6 0.1 1.1 1 0 0 1 1 1 0 NlpB/DapX lipoprotein OppC_N PF12911.7 gi|240104155|ref|YP_002960464.1| - 0.034 14.1 0.1 0.054 13.5 0.1 1.3 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C BtpA PF03437.15 gi|240104156|ref|YP_002960465.1| - 1.8e-106 355.3 0.1 2.1e-106 355.0 0.1 1.0 1 0 0 1 1 1 1 BtpA family bPH_3 PF14470.6 gi|240104157|ref|YP_002960466.1| - 2.2e-21 76.0 0.1 4e-21 75.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial PH domain SHOCT PF09851.9 gi|240104157|ref|YP_002960466.1| - 1.3e-11 43.9 5.2 3.1e-11 42.6 5.2 1.7 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.12 gi|240104157|ref|YP_002960466.1| - 0.00033 20.6 0.6 0.00083 19.3 0.6 1.7 1 0 0 1 1 1 1 Gas vesicle protein G bPH_1 PF08000.11 gi|240104157|ref|YP_002960466.1| - 0.0017 18.4 0.0 0.0039 17.3 0.0 1.7 1 1 0 1 1 1 1 Bacterial PH domain DMAP_binding PF06464.11 gi|240104157|ref|YP_002960466.1| - 0.023 15.5 3.9 0.023 15.5 3.9 2.2 2 0 0 2 2 2 0 DMAP1-binding Domain Fumarate_red_D PF02313.17 gi|240104159|ref|YP_002960468.1| - 0.0093 16.1 0.3 0.014 15.5 0.3 1.2 1 0 0 1 1 1 1 Fumarate reductase subunit D DUF485 PF04341.12 gi|240104159|ref|YP_002960468.1| - 0.012 15.6 0.3 0.012 15.6 0.3 2.2 3 0 0 3 3 3 0 Protein of unknown function, DUF485 Na_Ala_symp PF01235.17 gi|240104159|ref|YP_002960468.1| - 0.029 13.7 0.7 0.028 13.7 0.7 1.1 1 0 0 1 1 1 0 Sodium:alanine symporter family DUF2304 PF10066.9 gi|240104159|ref|YP_002960468.1| - 1.2 9.3 6.1 3.7 7.8 5.5 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) DUF2304 PF10066.9 gi|240104160|ref|YP_002960469.1| - 0.051 13.8 10.6 0.18 12.0 7.4 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) DUF4064 PF13273.6 gi|240104160|ref|YP_002960469.1| - 2.7 8.3 10.3 0.18 12.1 1.7 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) DUF257 PF03192.13 gi|240104162|ref|YP_002960471.1| - 7.3e-46 156.6 0.0 8.5e-46 156.4 0.0 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 PmbA_TldD PF01523.16 gi|240104163|ref|YP_002960472.1| - 1.4e-65 221.9 0.4 2.1e-65 221.3 0.4 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|240104164|ref|YP_002960473.1| - 5.2e-44 151.2 0.3 6.5e-44 150.9 0.3 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Usp PF00582.26 gi|240104165|ref|YP_002960474.1| - 2.8e-21 76.5 0.0 3.5e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family PGK PF00162.19 gi|240104165|ref|YP_002960474.1| - 0.0091 15.0 0.0 0.0097 14.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoglycerate kinase CitMHS PF03600.16 gi|240104166|ref|YP_002960475.1| - 6.7e-53 179.8 25.3 6.7e-53 179.8 25.3 1.7 1 1 1 2 2 2 1 Citrate transporter ArsB PF02040.15 gi|240104166|ref|YP_002960475.1| - 5.6e-19 68.8 29.0 6.8e-19 68.5 29.0 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein NhaB PF06450.12 gi|240104166|ref|YP_002960475.1| - 0.00012 21.1 9.1 0.00012 21.1 9.1 2.6 2 1 0 2 2 2 1 Bacterial Na+/H+ antiporter B (NhaB) Usp PF00582.26 gi|240104167|ref|YP_002960476.1| - 0.026 15.0 0.0 0.033 14.7 0.0 1.2 1 0 0 1 1 1 0 Universal stress protein family Lipoprotein_20 PF13942.6 gi|240104167|ref|YP_002960476.1| - 0.11 12.4 0.1 0.14 12.1 0.1 1.1 1 0 0 1 1 1 0 YfhG lipoprotein Lon_C PF05362.13 gi|240104168|ref|YP_002960477.1| - 2.4e-14 53.3 0.8 4.8e-14 52.4 0.8 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|240104168|ref|YP_002960477.1| - 0.00046 20.0 0.1 0.0017 18.2 0.0 1.9 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase Hypoth_Ymh PF09509.10 gi|240104168|ref|YP_002960477.1| - 0.024 14.5 0.6 7.9 6.4 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (Hypoth_ymh) DUF357 PF04010.13 gi|240104168|ref|YP_002960477.1| - 0.032 14.3 17.0 0.044 13.9 0.6 4.7 4 1 0 4 4 4 0 Protein of unknown function (DUF357) HEPN PF05168.14 gi|240104168|ref|YP_002960477.1| - 0.062 13.4 8.9 1.9 8.6 1.9 3.9 2 1 1 3 3 3 0 HEPN domain PAPS_reduct PF01507.19 gi|240104169|ref|YP_002960478.1| - 1.3e-32 113.3 0.0 2e-32 112.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|240104169|ref|YP_002960478.1| - 0.002 17.7 0.0 0.003 17.1 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|240104169|ref|YP_002960478.1| - 0.012 14.8 0.0 0.028 13.5 0.0 1.6 2 0 0 2 2 2 0 NAD synthase tRNA_Me_trans PF03054.16 gi|240104169|ref|YP_002960478.1| - 0.29 9.9 0.0 0.55 9.0 0.0 1.4 2 0 0 2 2 2 0 tRNA methyl transferase Methyltransf_11 PF08241.12 gi|240104170|ref|YP_002960479.1| - 8.3e-24 84.1 0.0 1.3e-23 83.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|240104170|ref|YP_002960479.1| - 2.5e-19 69.8 0.0 3.6e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|240104170|ref|YP_002960479.1| - 9.9e-18 64.5 0.0 1.2e-17 64.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|240104170|ref|YP_002960479.1| - 7e-15 55.1 0.0 8.3e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|240104170|ref|YP_002960479.1| - 5.7e-13 49.4 0.0 7.9e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|240104170|ref|YP_002960479.1| - 6.2e-12 45.4 0.0 7.5e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_29 PF03141.16 gi|240104170|ref|YP_002960479.1| - 0.0076 14.9 0.0 0.0092 14.6 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.12 gi|240104170|ref|YP_002960479.1| - 0.015 14.9 0.0 0.022 14.4 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|240104170|ref|YP_002960479.1| - 0.017 15.0 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase UPF0020 PF01170.18 gi|240104170|ref|YP_002960479.1| - 0.091 12.4 0.0 0.18 11.5 0.0 1.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 RNA_Me_trans PF04252.13 gi|240104171|ref|YP_002960480.1| - 2.2e-46 158.0 0.0 2.7e-46 157.7 0.0 1.1 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase EMP24_GP25L PF01105.24 gi|240104172|ref|YP_002960481.1| - 5.9e-08 32.9 0.0 5.9e-08 32.9 0.0 1.8 2 0 0 2 2 2 1 emp24/gp25L/p24 family/GOLD PPC PF04151.15 gi|240104172|ref|YP_002960481.1| - 0.0031 18.6 0.5 0.047 14.8 0.2 2.2 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain DUF3244 PF11589.8 gi|240104172|ref|YP_002960481.1| - 0.045 13.8 0.3 0.095 12.8 0.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3244) DUF1735 PF08522.10 gi|240104172|ref|YP_002960481.1| - 0.063 13.9 0.1 0.094 13.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1735) CBM_11 PF03425.13 gi|240104172|ref|YP_002960481.1| - 0.13 12.2 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate binding domain (family 11) bMG6 PF17962.1 gi|240104172|ref|YP_002960481.1| - 0.17 12.0 0.0 1.1 9.4 0.0 1.9 1 1 0 2 2 2 0 Bacterial macroglobulin domain 6 NTP_transf_2 PF01909.23 gi|240104173|ref|YP_002960482.1| - 1e-10 41.8 0.3 1.6e-10 41.1 0.3 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|240104173|ref|YP_002960482.1| - 2.7e-05 24.2 0.2 3.3e-05 23.9 0.2 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase BolA PF01722.18 gi|240104173|ref|YP_002960482.1| - 0.069 13.4 0.0 0.12 12.7 0.0 1.5 1 1 0 1 1 1 0 BolA-like protein NanE PF04131.14 gi|240104173|ref|YP_002960482.1| - 0.17 11.0 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase HEPN PF05168.14 gi|240104174|ref|YP_002960483.1| - 1.9e-14 53.8 0.8 2e-14 53.7 0.8 1.0 1 0 0 1 1 1 1 HEPN domain DUF2103 PF09876.9 gi|240104175|ref|YP_002960484.1| - 4.7e-22 77.8 0.1 5.4e-22 77.6 0.1 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) FTR_C PF02741.15 gi|240104175|ref|YP_002960484.1| - 0.13 12.3 0.0 2.1 8.4 0.0 2.0 1 1 0 1 1 1 0 FTR, proximal lobe UPF0175 PF03683.13 gi|240104176|ref|YP_002960485.1| - 1.6e-15 56.5 0.0 2e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) ANT PF03374.14 gi|240104176|ref|YP_002960485.1| - 0.12 12.7 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain DUF3368 PF11848.8 gi|240104178|ref|YP_002960487.1| - 3.5e-09 36.3 0.2 4.8e-09 35.9 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) NETI PF14044.6 gi|240104178|ref|YP_002960487.1| - 0.13 12.0 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 NETI protein DUF5591 PF17884.1 gi|240104179|ref|YP_002960488.1| - 2.4e-50 170.4 0.0 4e-50 169.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|240104179|ref|YP_002960488.1| - 1.4e-11 44.1 2.1 3e-11 43.1 2.1 1.4 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|240104179|ref|YP_002960488.1| - 4.5e-05 23.5 0.0 9.5e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase WXG100 PF06013.12 gi|240104180|ref|YP_002960489.1| - 0.00018 21.7 11.6 1.1 9.5 0.5 4.8 3 1 0 4 4 4 1 Proteins of 100 residues with WXG MscS_porin PF12795.7 gi|240104180|ref|YP_002960489.1| - 0.00028 20.5 41.8 0.016 14.7 19.7 3.4 1 1 2 3 3 3 2 Mechanosensitive ion channel porin domain Occludin_ELL PF07303.13 gi|240104180|ref|YP_002960489.1| - 0.00036 21.2 37.0 0.64 10.8 2.7 3.7 2 1 2 4 4 4 4 Occludin homology domain EzrA PF06160.12 gi|240104180|ref|YP_002960489.1| - 0.00042 18.6 45.6 0.0093 14.2 33.2 2.4 1 1 2 3 3 3 3 Septation ring formation regulator, EzrA APG6_N PF17675.1 gi|240104180|ref|YP_002960489.1| - 0.00056 20.4 20.8 0.00056 20.4 20.8 4.1 1 1 3 4 4 4 1 Apg6 coiled-coil region PspA_IM30 PF04012.12 gi|240104180|ref|YP_002960489.1| - 0.0029 17.2 19.4 0.0029 17.2 19.4 3.4 1 1 1 2 2 2 1 PspA/IM30 family Laminin_II PF06009.12 gi|240104180|ref|YP_002960489.1| - 0.004 17.2 31.8 0.49 10.4 1.1 4.1 1 1 3 4 4 4 3 Laminin Domain II DUF1664 PF07889.12 gi|240104180|ref|YP_002960489.1| - 0.0044 17.0 29.8 0.32 11.0 5.6 3.9 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) DUF4200 PF13863.6 gi|240104180|ref|YP_002960489.1| - 0.005 17.2 62.5 0.087 13.2 23.9 3.7 2 2 1 3 3 3 2 Domain of unknown function (DUF4200) Seryl_tRNA_N PF02403.22 gi|240104180|ref|YP_002960489.1| - 0.0067 16.6 49.2 0.046 14.0 12.0 5.0 1 1 3 4 4 4 3 Seryl-tRNA synthetase N-terminal domain DUF4140 PF13600.6 gi|240104180|ref|YP_002960489.1| - 0.0085 16.5 38.1 0.036 14.5 1.2 5.3 3 1 1 4 4 4 2 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.20 gi|240104180|ref|YP_002960489.1| - 0.012 15.5 5.9 0.012 15.5 5.9 6.4 3 1 2 6 6 6 0 Prefoldin subunit Taxilin PF09728.9 gi|240104180|ref|YP_002960489.1| - 0.018 14.2 11.2 0.018 14.2 11.2 3.4 1 1 1 2 2 1 0 Myosin-like coiled-coil protein AAA_13 PF13166.6 gi|240104180|ref|YP_002960489.1| - 0.026 13.2 42.2 0.029 13.0 26.7 2.1 1 1 1 2 2 2 0 AAA domain ZapB PF06005.12 gi|240104180|ref|YP_002960489.1| - 0.032 14.7 15.7 0.032 14.7 15.7 5.7 1 1 4 5 5 5 0 Cell division protein ZapB CENP-F_leu_zip PF10473.9 gi|240104180|ref|YP_002960489.1| - 0.094 12.7 53.7 2.7 8.0 18.3 4.5 1 1 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF5082 PF16888.5 gi|240104180|ref|YP_002960489.1| - 0.15 12.4 35.1 0.21 11.9 7.0 3.8 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) CENP-H PF05837.12 gi|240104180|ref|YP_002960489.1| - 0.17 12.3 47.0 0.66 10.4 14.9 4.1 2 2 2 4 4 4 0 Centromere protein H (CENP-H) Filament PF00038.21 gi|240104180|ref|YP_002960489.1| - 0.17 11.4 47.2 4.9 6.7 8.9 3.8 1 1 0 1 1 1 0 Intermediate filament protein Sec34 PF04136.15 gi|240104180|ref|YP_002960489.1| - 0.19 11.6 22.3 1.7 8.5 5.7 3.7 2 2 2 4 4 4 0 Sec34-like family Snapin_Pallidin PF14712.6 gi|240104180|ref|YP_002960489.1| - 0.19 12.1 40.9 0.98 9.9 3.8 4.5 1 1 3 4 4 4 0 Snapin/Pallidin NPV_P10 PF05531.12 gi|240104180|ref|YP_002960489.1| - 0.29 11.6 20.3 40 4.8 0.5 4.9 1 1 3 4 4 4 0 Nucleopolyhedrovirus P10 protein PE PF00934.20 gi|240104180|ref|YP_002960489.1| - 0.45 10.9 1.7 32 5.0 0.5 3.6 3 2 0 3 3 2 0 PE family FH2 PF02181.23 gi|240104180|ref|YP_002960489.1| - 0.47 9.5 30.1 0.39 9.8 6.8 3.0 2 1 1 3 3 3 0 Formin Homology 2 Domain Fez1 PF06818.15 gi|240104180|ref|YP_002960489.1| - 0.52 10.7 45.7 1.8e+04 -11.2 45.4 2.9 1 1 0 1 1 0 0 Fez1 DUF4407 PF14362.6 gi|240104180|ref|YP_002960489.1| - 0.56 9.5 34.2 0.013 14.8 14.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) YabA PF06156.13 gi|240104180|ref|YP_002960489.1| - 0.62 10.7 39.5 1.3 9.7 12.8 4.2 1 1 3 4 4 4 0 Initiation control protein YabA TMPIT PF07851.13 gi|240104180|ref|YP_002960489.1| - 0.67 9.1 38.4 0.051 12.8 13.3 3.2 1 1 0 2 2 2 0 TMPIT-like protein KASH_CCD PF14662.6 gi|240104180|ref|YP_002960489.1| - 0.7 9.7 51.6 2.3 8.0 31.7 2.5 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 or KASH ATG16 PF08614.11 gi|240104180|ref|YP_002960489.1| - 0.75 10.0 40.3 0.29 11.3 9.6 2.7 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) Laminin_I PF06008.14 gi|240104180|ref|YP_002960489.1| - 0.75 9.5 36.9 0.81 9.3 11.1 3.0 1 1 1 3 3 3 0 Laminin Domain I ERM PF00769.19 gi|240104180|ref|YP_002960489.1| - 0.91 9.3 55.3 0.5 10.1 26.9 2.9 1 1 2 3 3 3 0 Ezrin/radixin/moesin family MCPsignal PF00015.21 gi|240104180|ref|YP_002960489.1| - 0.95 9.3 16.2 1 9.2 1.2 3.0 2 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|240104180|ref|YP_002960489.1| - 0.97 9.7 13.6 7.3 6.9 1.8 4.0 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) Atg14 PF10186.9 gi|240104180|ref|YP_002960489.1| - 1 8.4 50.6 0.9 8.6 16.8 2.9 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 LPP PF04728.13 gi|240104180|ref|YP_002960489.1| - 1.1 9.7 16.3 20 5.7 1.9 5.6 4 2 3 7 7 6 0 Lipoprotein leucine-zipper Syntaxin PF00804.25 gi|240104180|ref|YP_002960489.1| - 1.2 8.8 40.9 4.3 6.9 15.1 3.7 1 1 1 3 3 3 0 Syntaxin T3SSipB PF16535.5 gi|240104180|ref|YP_002960489.1| - 1.3 9.4 23.1 0.9 10.0 5.8 3.6 1 1 3 4 4 4 0 Type III cell invasion protein SipB Spc7 PF08317.11 gi|240104180|ref|YP_002960489.1| - 1.4 7.7 53.0 0.63 8.9 24.9 3.0 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF3584 PF12128.8 gi|240104180|ref|YP_002960489.1| - 3 5.3 47.2 1.3 6.4 18.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Fib_alpha PF08702.10 gi|240104180|ref|YP_002960489.1| - 3 8.0 35.6 3 8.0 12.9 3.5 1 1 1 3 3 3 0 Fibrinogen alpha/beta chain family OmpH PF03938.14 gi|240104180|ref|YP_002960489.1| - 3.2 8.1 56.2 0.64 10.3 22.7 3.5 1 1 2 3 3 2 0 Outer membrane protein (OmpH-like) FlaC_arch PF05377.11 gi|240104180|ref|YP_002960489.1| - 3.2 8.2 26.0 0.25 11.8 1.7 5.6 3 2 2 5 5 5 0 Flagella accessory protein C (FlaC) UPF0184 PF03670.13 gi|240104180|ref|YP_002960489.1| - 3.3 8.1 19.2 0.22 11.9 0.4 4.1 2 2 2 4 4 4 0 Uncharacterised protein family (UPF0184) FlgN PF05130.12 gi|240104180|ref|YP_002960489.1| - 3.9 8.0 36.4 0.049 14.1 5.8 3.7 1 1 3 4 4 3 0 FlgN protein TPR_MLP1_2 PF07926.12 gi|240104180|ref|YP_002960489.1| - 4.3 7.4 49.8 30 4.7 20.3 4.5 1 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein FapA PF03961.13 gi|240104180|ref|YP_002960489.1| - 4.9 5.6 47.1 0.13 10.9 18.7 3.4 1 1 2 3 3 3 0 Flagellar Assembly Protein A DUF724 PF05266.14 gi|240104180|ref|YP_002960489.1| - 5.4 6.8 47.8 0.19 11.6 16.5 3.5 1 1 3 4 4 4 0 Protein of unknown function (DUF724) Metallophos PF00149.28 gi|240104181|ref|YP_002960490.1| - 1.4e-10 42.1 2.3 2.8e-10 41.0 2.3 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Mucin PF01456.17 gi|240104181|ref|YP_002960490.1| - 4.8e-07 29.9 38.6 7.2e-07 29.3 38.6 1.2 1 0 0 1 1 1 1 Mucin-like glycoprotein DUF4834 PF16118.5 gi|240104181|ref|YP_002960490.1| - 0.14 13.1 0.2 0.33 11.9 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4834) Cupin_2 PF07883.11 gi|240104182|ref|YP_002960491.1| - 2.6e-14 52.7 0.3 3.4e-14 52.3 0.3 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|240104182|ref|YP_002960491.1| - 1.8e-09 37.6 0.1 2.3e-09 37.3 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|240104182|ref|YP_002960491.1| - 0.0002 21.0 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|240104182|ref|YP_002960491.1| - 0.0024 17.5 0.0 0.0029 17.2 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.7 gi|240104182|ref|YP_002960491.1| - 0.0032 17.4 0.1 0.0041 17.0 0.1 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain MannoseP_isomer PF01050.18 gi|240104182|ref|YP_002960491.1| - 0.0048 16.8 0.0 0.0054 16.6 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Auxin_BP PF02041.16 gi|240104182|ref|YP_002960491.1| - 0.011 15.5 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein Ectoine_synth PF06339.12 gi|240104182|ref|YP_002960491.1| - 0.013 15.7 0.0 0.016 15.4 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase DMSP_lyase PF16867.5 gi|240104182|ref|YP_002960491.1| - 0.058 13.0 0.4 0.075 12.7 0.4 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase PCO_ADO PF07847.12 gi|240104182|ref|YP_002960491.1| - 0.064 12.7 0.0 0.093 12.2 0.0 1.2 1 0 0 1 1 1 0 PCO_ADO Peptidase_S24 PF00717.23 gi|240104183|ref|YP_002960492.1| - 4.5e-10 39.4 0.1 1.7e-09 37.5 0.2 1.9 2 0 0 2 2 2 1 Peptidase S24-like Amidase_6 PF12671.7 gi|240104183|ref|YP_002960492.1| - 0.099 12.7 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative amidase domain MG1 PF17790.1 gi|240104184|ref|YP_002960493.1| - 0.056 13.9 0.0 0.08 13.4 0.0 1.3 1 0 0 1 1 1 0 Macroglobulin domain MG1 CARDB PF07705.11 gi|240104184|ref|YP_002960493.1| - 0.2 11.9 2.5 0.77 10.0 1.8 2.2 1 1 1 2 2 2 0 CARDB Radical_SAM PF04055.21 gi|240104185|ref|YP_002960494.1| - 8.6e-29 101.1 0.6 5.3e-26 92.0 0.2 2.2 2 0 0 2 2 2 2 Radical SAM superfamily UPF0004 PF00919.20 gi|240104185|ref|YP_002960494.1| - 4.7e-21 74.7 0.0 9.9e-21 73.6 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|240104185|ref|YP_002960494.1| - 2e-09 37.3 0.5 4.2e-09 36.3 0.5 1.5 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|240104185|ref|YP_002960494.1| - 0.11 12.7 0.4 1.8 8.8 0.4 2.5 1 1 0 1 1 1 0 TRAM domain His_biosynth PF00977.21 gi|240104185|ref|YP_002960494.1| - 0.13 11.7 0.0 16 4.9 0.0 2.8 3 1 0 3 3 3 0 Histidine biosynthesis protein CarS-like PF01864.17 gi|240104186|ref|YP_002960495.1| - 3.4e-60 203.0 1.6 3.9e-60 202.8 1.6 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|240104186|ref|YP_002960495.1| - 1.3e-10 41.5 1.5 1.3e-10 41.5 1.5 2.0 2 0 0 2 2 2 1 Cytidylyltransferase family ATP_bind_3 PF01171.20 gi|240104187|ref|YP_002960496.1| - 7.8e-14 51.8 0.0 1.3e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|240104187|ref|YP_002960496.1| - 8e-09 35.8 0.0 1.3e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|240104187|ref|YP_002960496.1| - 9.3e-09 35.1 0.2 1.3e-07 31.3 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|240104187|ref|YP_002960496.1| - 1.2e-08 34.8 0.0 2.1e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|240104187|ref|YP_002960496.1| - 1.5e-08 33.9 0.1 4.9e-08 32.1 0.1 1.7 1 1 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|240104187|ref|YP_002960496.1| - 0.00033 19.8 0.0 0.00062 19.0 0.0 1.4 1 0 0 1 1 1 1 NAD synthase RecR PF02132.15 gi|240104187|ref|YP_002960496.1| - 0.0048 16.4 1.7 0.0048 16.4 1.7 2.7 3 0 0 3 3 3 1 RecR protein Rhodanese PF00581.20 gi|240104187|ref|YP_002960496.1| - 0.0086 16.6 0.0 0.017 15.6 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Asn_synthase PF00733.21 gi|240104187|ref|YP_002960496.1| - 0.014 15.1 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase DUF1241 PF06840.11 gi|240104187|ref|YP_002960496.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) C1_2 PF03107.16 gi|240104187|ref|YP_002960496.1| - 0.54 10.6 11.8 0.54 10.6 0.7 3.6 4 0 0 4 4 4 0 C1 domain zn-ribbon_14 PF16503.5 gi|240104187|ref|YP_002960496.1| - 1.4 8.5 8.8 0.073 12.6 2.4 2.1 2 0 0 2 2 2 0 Zinc-ribbon Transp_Tc5_C PF04236.15 gi|240104187|ref|YP_002960496.1| - 2.6 8.5 7.5 0.3 11.5 1.5 2.5 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain zf-C2H2_10 PF16588.5 gi|240104187|ref|YP_002960496.1| - 7.7 6.3 8.8 11 5.9 0.2 3.2 3 0 0 3 3 3 0 C2H2 zinc-finger DUF257 PF03192.13 gi|240104188|ref|YP_002960497.1| - 4.5e-38 131.1 1.3 5.6e-38 130.8 1.3 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 DUF1871 PF08958.10 gi|240104188|ref|YP_002960497.1| - 0.021 15.2 0.0 0.091 13.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1871) BRX_N PF13713.6 gi|240104188|ref|YP_002960497.1| - 0.051 13.3 0.2 0.22 11.3 0.0 2.2 3 0 0 3 3 3 0 Transcription factor BRX N-terminal domain DUF1926 PF09095.11 gi|240104189|ref|YP_002960498.1| - 4.3e-73 246.4 0.0 1.5e-72 244.6 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF1926) Glyco_hydro_57 PF03065.15 gi|240104189|ref|YP_002960498.1| - 2.8e-55 187.8 0.1 4.4e-54 183.9 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolase family 57 DUF1925 PF09094.11 gi|240104189|ref|YP_002960498.1| - 5.2e-36 122.8 0.5 9.9e-36 121.9 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glyco_hydro_38N PF01074.22 gi|240104189|ref|YP_002960498.1| - 1.6e-06 27.7 0.0 1.4e-05 24.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl hydrolases family 38 N-terminal domain CoA_binding_2 PF13380.6 gi|240104189|ref|YP_002960498.1| - 0.083 13.4 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 CoA binding domain CTP_transf_1 PF01148.20 gi|240104190|ref|YP_002960499.1| - 0.00044 20.1 1.7 0.00065 19.5 1.7 1.4 1 1 0 1 1 1 1 Cytidylyltransferase family DUF1269 PF06897.12 gi|240104190|ref|YP_002960499.1| - 0.2 11.9 1.3 0.27 11.6 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) HAD_2 PF13419.6 gi|240104191|ref|YP_002960500.1| - 4.4e-20 72.5 0.0 6.2e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|240104191|ref|YP_002960500.1| - 6.9e-16 59.2 0.0 2e-15 57.6 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|240104191|ref|YP_002960500.1| - 1.3e-12 47.6 0.0 6.4e-12 45.4 0.0 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|240104191|ref|YP_002960500.1| - 3e-11 44.1 0.2 4.5e-11 43.5 0.2 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|240104191|ref|YP_002960500.1| - 5.2e-05 23.3 0.0 0.00011 22.2 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|240104191|ref|YP_002960500.1| - 0.00036 20.2 0.1 0.0022 17.6 0.0 2.2 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase NT5C PF06941.12 gi|240104191|ref|YP_002960500.1| - 0.0076 16.1 0.1 0.33 10.8 0.0 2.3 1 1 0 2 2 2 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) NIF PF03031.18 gi|240104191|ref|YP_002960500.1| - 0.17 11.7 1.0 2 8.2 1.0 2.2 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase DUF131 PF01998.17 gi|240104192|ref|YP_002960501.1| - 1.4e-15 56.6 7.8 1.4e-15 56.6 7.8 2.0 1 1 1 2 2 2 1 Protein of unknown function DUF131 Fig1 PF12351.8 gi|240104192|ref|YP_002960501.1| - 0.18 11.7 2.1 0.24 11.3 2.1 1.1 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 Na_H_Exchanger PF00999.21 gi|240104193|ref|YP_002960502.1| - 2.8e-51 174.5 45.4 3.3e-51 174.3 45.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Cons_hypoth698 PF03601.14 gi|240104193|ref|YP_002960502.1| - 2.7 6.8 32.7 0.075 11.9 6.3 3.5 2 2 1 3 3 3 0 Conserved hypothetical protein 698 DUF5408 PF17402.2 gi|240104193|ref|YP_002960502.1| - 7.8 6.5 7.6 22 5.0 0.1 3.1 3 0 0 3 3 3 0 Family of unknown function (DUF5408) Pyridoxal_deC PF00282.19 gi|240104194|ref|YP_002960503.1| - 4.8e-35 121.0 0.0 2.2e-34 118.8 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|240104194|ref|YP_002960503.1| - 1.3e-13 50.7 0.0 6.6e-09 35.2 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|240104194|ref|YP_002960503.1| - 2e-08 33.9 0.0 3.2e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|240104194|ref|YP_002960503.1| - 2.3e-06 27.1 0.0 4.8e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|240104194|ref|YP_002960503.1| - 0.0028 16.9 0.0 0.014 14.6 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class I and II SepSecS PF05889.13 gi|240104194|ref|YP_002960503.1| - 0.0093 14.7 0.0 0.043 12.5 0.0 2.0 2 0 0 2 2 2 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Radical_SAM PF04055.21 gi|240104194|ref|YP_002960503.1| - 0.26 11.6 0.8 1.9 8.8 0.0 2.7 2 1 0 3 3 3 0 Radical SAM superfamily Peptidase_M73 PF12389.8 gi|240104195|ref|YP_002960504.1| - 1.4e-05 25.0 0.1 1.8e-05 24.7 0.1 1.4 1 1 0 1 1 1 1 Camelysin metallo-endopeptidase SurA_N_2 PF13623.6 gi|240104195|ref|YP_002960504.1| - 0.078 12.8 0.3 12 5.8 0.1 2.2 2 0 0 2 2 2 0 SurA N-terminal domain DUF11 PF01345.18 gi|240104195|ref|YP_002960504.1| - 0.081 13.2 0.0 0.42 10.9 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function DUF11 DUF4981 PF16353.5 gi|240104195|ref|YP_002960504.1| - 0.099 13.1 0.0 0.25 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function(DUF4981) Polysacc_synt PF01943.17 gi|240104196|ref|YP_002960505.1| - 2.7e-24 86.0 24.0 2.7e-24 86.0 24.0 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|240104196|ref|YP_002960505.1| - 2.9e-23 82.5 16.9 6.7e-23 81.3 16.9 1.6 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|240104196|ref|YP_002960505.1| - 8.6e-20 71.3 17.6 8.6e-20 71.3 17.6 4.0 3 2 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|240104196|ref|YP_002960505.1| - 9.6e-07 28.6 13.2 9.6e-07 28.6 13.2 3.9 3 2 1 4 4 4 2 MatE PS_pyruv_trans PF04230.13 gi|240104197|ref|YP_002960506.1| - 2.9e-17 63.5 0.6 4.6e-17 62.9 0.6 1.4 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase DUF5553 PF17707.1 gi|240104197|ref|YP_002960506.1| - 0.14 11.6 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5553) Glycos_transf_2 PF00535.26 gi|240104198|ref|YP_002960507.1| - 2.2e-27 95.9 0.0 3.7e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|240104198|ref|YP_002960507.1| - 1.9e-20 73.8 0.0 3.1e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|240104198|ref|YP_002960507.1| - 5.1e-08 33.1 0.0 8.6e-08 32.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|240104198|ref|YP_002960507.1| - 1.9e-07 30.8 0.0 2.4e-07 30.5 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|240104198|ref|YP_002960507.1| - 1.3e-06 28.0 0.0 3.1e-06 26.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.6 gi|240104198|ref|YP_002960507.1| - 1.4e-05 24.9 0.0 2.4e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family Glyco_transf_64 PF09258.10 gi|240104198|ref|YP_002960507.1| - 0.00083 18.7 0.2 0.0039 16.5 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 64 domain RSRP PF17069.5 gi|240104198|ref|YP_002960507.1| - 0.02 14.5 0.6 0.028 14.0 0.6 1.1 1 0 0 1 1 1 0 Arginine/Serine-Rich protein 1 Glycos_transf_1 PF00534.20 gi|240104199|ref|YP_002960508.1| - 9.9e-36 122.8 0.0 3e-35 121.3 0.0 1.8 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|240104199|ref|YP_002960508.1| - 1.1e-29 103.5 0.0 8.9e-29 100.6 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|240104199|ref|YP_002960508.1| - 8.5e-13 48.6 0.0 1.6e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|240104199|ref|YP_002960508.1| - 3.4e-07 30.8 0.0 5.1e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|240104199|ref|YP_002960508.1| - 1.8e-05 25.1 0.0 5.1e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|240104199|ref|YP_002960508.1| - 2.7e-05 24.2 0.2 8e-05 22.7 0.2 1.8 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF3492 PF11997.8 gi|240104199|ref|YP_002960508.1| - 0.0084 15.9 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3492) Asn_synthase PF00733.21 gi|240104200|ref|YP_002960509.1| - 1.5e-11 44.6 0.0 1.5e-10 41.3 0.0 2.0 1 1 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|240104200|ref|YP_002960509.1| - 3.8e-06 26.6 0.0 1.5e-05 24.6 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|240104200|ref|YP_002960509.1| - 0.13 11.0 0.0 0.28 9.9 0.0 1.5 1 0 0 1 1 1 0 tRNA methyl transferase Glyco_transf_4 PF13439.6 gi|240104202|ref|YP_002960511.1| - 7e-10 39.2 0.2 1.5e-09 38.1 0.2 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|240104202|ref|YP_002960511.1| - 4.5e-08 33.7 0.0 8.3e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|240104202|ref|YP_002960511.1| - 5.4e-07 29.3 0.0 9.2e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|240104202|ref|YP_002960511.1| - 7.2e-06 26.5 0.0 1.4e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|240104202|ref|YP_002960511.1| - 0.0014 18.6 0.1 0.0027 17.7 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|240104202|ref|YP_002960511.1| - 0.02 14.6 0.0 0.04 13.6 0.0 1.6 1 0 0 1 1 1 0 Starch synthase catalytic domain UDPG_MGDP_dh_N PF03721.14 gi|240104203|ref|YP_002960512.1| - 8e-67 224.4 0.4 1.2e-66 223.9 0.4 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|240104203|ref|YP_002960512.1| - 4.4e-39 132.6 0.0 9e-39 131.6 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|240104203|ref|YP_002960512.1| - 2.2e-26 92.3 0.0 1e-25 90.1 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|240104203|ref|YP_002960512.1| - 9.6e-05 22.9 0.1 2.1 9.0 0.1 4.2 3 2 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|240104203|ref|YP_002960512.1| - 0.0079 16.7 0.6 0.05 14.2 0.1 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|240104203|ref|YP_002960512.1| - 0.016 14.5 0.0 0.03 13.6 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|240104203|ref|YP_002960512.1| - 0.026 13.9 0.1 6.4 6.1 0.1 2.8 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|240104203|ref|YP_002960512.1| - 0.065 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NTP_transferase PF00483.23 gi|240104204|ref|YP_002960513.1| - 2.6e-32 112.4 0.0 3.7e-32 111.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|240104204|ref|YP_002960513.1| - 4.8e-10 40.0 0.0 7.4e-10 39.4 0.0 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 gi|240104204|ref|YP_002960513.1| - 0.00046 20.0 0.0 0.00073 19.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.19 gi|240104204|ref|YP_002960513.1| - 0.0016 18.2 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Smr PF01713.21 gi|240104204|ref|YP_002960513.1| - 0.03 14.7 0.0 0.13 12.6 0.0 2.1 2 0 0 2 2 2 0 Smr domain CTP_transf_3 PF02348.19 gi|240104204|ref|YP_002960513.1| - 0.055 13.4 0.0 0.084 12.8 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase Glycos_transf_2 PF00535.26 gi|240104205|ref|YP_002960514.1| - 1.6e-39 135.4 0.0 2.7e-39 134.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|240104205|ref|YP_002960514.1| - 4.3e-22 79.1 0.0 7.6e-22 78.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|240104205|ref|YP_002960514.1| - 4.8e-18 65.6 0.0 6.5e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|240104205|ref|YP_002960514.1| - 0.0057 16.6 0.3 0.015 15.2 0.3 1.7 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|240104205|ref|YP_002960514.1| - 0.047 14.2 0.0 0.096 13.2 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 GNT-I PF03071.15 gi|240104205|ref|YP_002960514.1| - 0.097 11.4 0.1 1.2 7.8 0.0 2.0 2 0 0 2 2 2 0 GNT-I family Hexapep PF00132.24 gi|240104206|ref|YP_002960515.1| - 8.4e-25 85.5 13.0 3.3e-08 32.9 0.8 4.1 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|240104206|ref|YP_002960515.1| - 8.6e-16 57.4 15.4 2.1e-09 36.9 3.8 4.0 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase Nudix_N_2 PF14803.6 gi|240104206|ref|YP_002960515.1| - 0.013 15.4 0.5 0.065 13.2 0.7 2.0 1 1 1 2 2 2 0 Nudix N-terminal Desulfoferrod_N PF06397.12 gi|240104206|ref|YP_002960515.1| - 0.021 14.5 1.7 0.034 13.8 0.1 2.3 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Acetyltransf_11 PF13720.6 gi|240104206|ref|YP_002960515.1| - 0.065 13.7 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF2613 PF11021.8 gi|240104206|ref|YP_002960515.1| - 0.13 12.4 1.9 0.22 11.7 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DUF951 PF06107.11 gi|240104206|ref|YP_002960515.1| - 0.13 12.2 2.4 0.17 11.8 0.8 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) zinc_ribbon_2 PF13240.6 gi|240104206|ref|YP_002960515.1| - 0.4 10.5 4.8 0.67 9.8 0.5 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DUF1922 PF09082.10 gi|240104206|ref|YP_002960515.1| - 6.3 7.2 8.0 5.4 7.4 0.4 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1922) DegT_DnrJ_EryC1 PF01041.17 gi|240104207|ref|YP_002960516.1| - 3.4e-138 460.9 0.0 3.8e-138 460.7 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|240104207|ref|YP_002960516.1| - 8.6e-08 31.8 0.0 1.5e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|240104207|ref|YP_002960516.1| - 9.5e-06 25.0 0.1 1.5e-05 24.4 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|240104207|ref|YP_002960516.1| - 2.1e-05 23.2 0.0 3.1e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|240104207|ref|YP_002960516.1| - 0.00014 21.0 0.0 0.00021 20.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V SHMT PF00464.19 gi|240104207|ref|YP_002960516.1| - 0.011 14.4 0.0 0.014 14.0 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase GFO_IDH_MocA PF01408.22 gi|240104208|ref|YP_002960517.1| - 6.2e-29 101.3 0.3 1.6e-28 99.9 0.4 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|240104208|ref|YP_002960517.1| - 9.8e-10 38.5 0.0 2.3e-09 37.3 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|240104208|ref|YP_002960517.1| - 3.9e-05 24.3 0.7 8e-05 23.3 0.4 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|240104208|ref|YP_002960517.1| - 4.8e-05 23.9 0.0 0.00012 22.6 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|240104208|ref|YP_002960517.1| - 5.9e-05 23.2 0.2 0.00027 21.0 0.0 2.2 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.24 gi|240104208|ref|YP_002960517.1| - 0.018 15.5 0.1 0.036 14.5 0.1 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|240104208|ref|YP_002960517.1| - 0.018 14.0 0.0 0.37 9.7 0.0 2.1 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_2 PF03446.15 gi|240104208|ref|YP_002960517.1| - 0.023 14.9 0.3 0.071 13.3 0.3 1.8 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|240104208|ref|YP_002960517.1| - 0.054 13.4 1.1 0.19 11.6 0.4 2.1 1 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ala_racemase_C PF00842.21 gi|240104208|ref|YP_002960517.1| - 0.096 12.5 0.0 0.72 9.7 0.0 2.2 2 0 0 2 2 2 0 Alanine racemase, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|240104209|ref|YP_002960518.1| - 4.6e-40 137.2 0.2 8.8e-40 136.3 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|240104209|ref|YP_002960518.1| - 1.9e-22 79.6 0.1 1.3e-21 77.0 0.0 2.4 3 0 0 3 3 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|240104209|ref|YP_002960518.1| - 9.8e-21 73.8 0.0 4.9e-18 65.1 0.0 2.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Intein_splicing PF14890.6 gi|240104209|ref|YP_002960518.1| - 1.5e-18 67.1 0.2 6.8e-18 64.9 0.0 2.2 2 0 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|240104209|ref|YP_002960518.1| - 2.3e-15 56.7 0.8 3.5e-08 33.6 0.1 3.3 3 1 0 3 3 3 2 LAGLIDADG-like domain NAD_binding_2 PF03446.15 gi|240104209|ref|YP_002960518.1| - 1.2e-08 35.3 0.1 1.4e-07 31.9 0.1 2.8 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|240104209|ref|YP_002960518.1| - 6.9e-07 29.4 0.2 1.9e-05 24.7 0.1 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Hint PF01079.20 gi|240104209|ref|YP_002960518.1| - 1.2e-05 24.9 0.0 6e-05 22.6 0.0 2.1 2 1 1 3 3 3 1 Hint module 3HCDH_N PF02737.18 gi|240104209|ref|YP_002960518.1| - 6.1e-05 23.0 1.0 0.00012 22.1 0.2 1.9 2 0 0 2 2 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|240104209|ref|YP_002960518.1| - 0.00016 21.1 0.2 0.051 12.9 0.1 2.6 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SRR1 PF07985.12 gi|240104209|ref|YP_002960518.1| - 0.022 14.8 0.0 0.076 13.1 0.0 1.9 1 0 0 1 1 1 0 SRR1 TrkA_N PF02254.18 gi|240104209|ref|YP_002960518.1| - 0.023 15.0 0.7 0.14 12.4 0.1 2.7 3 0 0 3 3 3 0 TrkA-N domain Mur_ligase PF01225.25 gi|240104209|ref|YP_002960518.1| - 0.038 14.3 0.1 11 6.4 0.0 3.3 3 0 0 3 3 3 0 Mur ligase family, catalytic domain Methyltransf_11 PF08241.12 gi|240104209|ref|YP_002960518.1| - 0.095 13.4 0.1 2.2 9.0 0.0 3.0 3 0 0 3 3 3 0 Methyltransferase domain AlaDh_PNT_C PF01262.21 gi|240104209|ref|YP_002960518.1| - 0.11 11.8 0.3 0.26 10.5 0.3 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|240104209|ref|YP_002960518.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Glycos_transf_2 PF00535.26 gi|240104210|ref|YP_002960519.1| - 1.3e-25 90.2 0.0 1.9e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|240104210|ref|YP_002960519.1| - 2.3e-06 27.7 0.0 3.1e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|240104210|ref|YP_002960519.1| - 0.001 19.6 0.0 0.0017 18.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF308 PF03729.13 gi|240104210|ref|YP_002960519.1| - 0.53 10.6 12.0 1.1 9.7 12.0 1.5 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) Tetraspanin PF00335.20 gi|240104210|ref|YP_002960519.1| - 0.65 9.7 4.8 0.96 9.1 4.8 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF354 PF04007.12 gi|240104211|ref|YP_002960520.1| - 2.6e-23 82.7 0.1 2.9e-23 82.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|240104211|ref|YP_002960520.1| - 0.091 12.8 0.1 0.16 12.0 0.1 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like DUF2274 PF10038.9 gi|240104211|ref|YP_002960520.1| - 0.11 13.0 0.0 0.36 11.3 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2274) STAS PF01740.21 gi|240104211|ref|YP_002960520.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 STAS domain PIG-L PF02585.17 gi|240104212|ref|YP_002960521.1| - 7.5e-16 59.0 0.0 1.1e-15 58.4 0.0 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase ATPgrasp_Ter PF15632.6 gi|240104213|ref|YP_002960522.1| - 1.1e-34 119.0 0.0 2.9e-34 117.6 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|240104213|ref|YP_002960522.1| - 7.3e-12 45.2 0.0 2.4e-11 43.6 0.0 1.9 1 1 1 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|240104213|ref|YP_002960522.1| - 4.2e-10 39.9 0.0 7.2e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|240104213|ref|YP_002960522.1| - 2.2e-05 24.1 0.0 4.3e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|240104213|ref|YP_002960522.1| - 0.00034 20.2 0.0 0.0013 18.4 0.0 2.0 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|240104213|ref|YP_002960522.1| - 0.0037 16.9 0.0 0.007 16.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|240104213|ref|YP_002960522.1| - 0.0062 16.3 0.0 0.015 15.1 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|240104213|ref|YP_002960522.1| - 0.016 14.6 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_gammatolerans_EJ3_uid59389/NC_012804.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_gammatolerans_EJ3_uid59389/NC_012804.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_gammatolerans_EJ3_uid59389/NC_012804.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_gammatolerans_EJ3_uid59389/NC_012804.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:13:32 2019 # [ok]