# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|433589360|ref|YP_007278856.1| - 6.3e-24 83.8 0.1 1.6e-23 82.5 0.1 1.8 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|433589360|ref|YP_007278856.1| - 8.1e-10 39.2 0.0 0.00059 20.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|433589360|ref|YP_007278856.1| - 2.2e-09 37.9 0.8 4.1e-08 33.8 0.1 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|433589360|ref|YP_007278856.1| - 1.6e-08 34.9 0.1 5.1e-06 26.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|433589360|ref|YP_007278856.1| - 0.00051 19.8 0.0 0.0015 18.3 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain TniB PF05621.11 gi|433589360|ref|YP_007278856.1| - 0.00058 19.3 0.2 0.0044 16.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein Sigma54_activat PF00158.26 gi|433589360|ref|YP_007278856.1| - 0.0028 17.4 0.0 0.0068 16.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|433589360|ref|YP_007278856.1| - 0.0029 16.8 0.0 0.007 15.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|433589360|ref|YP_007278856.1| - 0.0046 17.1 0.2 3.4 7.7 0.1 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_18 PF13238.6 gi|433589360|ref|YP_007278856.1| - 0.0057 17.2 0.0 0.016 15.7 0.0 1.8 2 0 0 2 2 1 1 AAA domain T2SSE PF00437.20 gi|433589360|ref|YP_007278856.1| - 0.0066 15.5 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|433589360|ref|YP_007278856.1| - 0.007 16.3 0.2 0.13 12.1 0.0 2.3 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|433589360|ref|YP_007278856.1| - 0.01 16.4 0.0 0.034 14.7 0.0 1.8 1 0 0 1 1 1 0 ABC transporter Rad17 PF03215.15 gi|433589360|ref|YP_007278856.1| - 0.015 15.3 0.0 0.095 12.6 0.0 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_32 PF13654.6 gi|433589360|ref|YP_007278856.1| - 0.015 14.1 0.3 1.3 7.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain HSBP1 PF06825.12 gi|433589360|ref|YP_007278856.1| - 0.018 14.9 1.9 0.028 14.3 0.1 2.3 2 0 0 2 2 2 0 Heat shock factor binding protein 1 AAA_assoc_2 PF16193.5 gi|433589360|ref|YP_007278856.1| - 0.031 14.6 0.8 0.1 12.9 0.2 2.1 2 0 0 2 2 2 0 AAA C-terminal domain TIP49 PF06068.13 gi|433589360|ref|YP_007278856.1| - 0.036 13.3 0.0 0.073 12.3 0.0 1.5 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_7 PF12775.7 gi|433589360|ref|YP_007278856.1| - 0.047 13.2 0.0 0.08 12.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DNA_pol3_delta2 PF13177.6 gi|433589360|ref|YP_007278856.1| - 0.069 12.9 0.0 0.17 11.6 0.0 1.8 2 1 0 2 2 2 0 DNA polymerase III, delta subunit NB-ARC PF00931.22 gi|433589360|ref|YP_007278856.1| - 0.094 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain KAP_NTPase PF07693.14 gi|433589360|ref|YP_007278856.1| - 0.099 11.9 0.0 0.3 10.3 0.0 1.8 2 0 0 2 2 2 0 KAP family P-loop domain RNA_helicase PF00910.22 gi|433589360|ref|YP_007278856.1| - 0.12 12.8 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|433589360|ref|YP_007278856.1| - 0.15 11.7 0.4 0.39 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|433589360|ref|YP_007278856.1| - 0.15 11.8 1.2 9.8 5.9 0.0 2.7 3 0 0 3 3 3 0 DEAD/DEAH box helicase MutS_III PF05192.18 gi|433589360|ref|YP_007278856.1| - 0.46 10.7 4.0 2.5 8.3 4.0 2.2 1 1 0 1 1 1 0 MutS domain III MerR-DNA-bind PF09278.11 gi|433589360|ref|YP_007278856.1| - 0.53 10.9 3.9 0.75 10.4 0.5 2.8 2 0 0 2 2 2 0 MerR, DNA binding Peptidase_S24 PF00717.23 gi|433589361|ref|YP_007278857.1| - 3.8e-06 26.7 0.1 9.9e-06 25.4 0.1 1.7 1 1 0 1 1 1 1 Peptidase S24-like Peptidase_S24 PF00717.23 gi|433589362|ref|YP_007278858.1| - 5.8e-09 35.8 0.7 2.2e-08 33.9 0.3 2.2 2 1 0 2 2 2 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|433589363|ref|YP_007278859.1| - 2.8e-14 53.0 0.0 4.1e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|433589363|ref|YP_007278859.1| - 1.6e-10 41.8 1.3 3.4e-10 40.8 1.3 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|433589363|ref|YP_007278859.1| - 6.8e-10 39.4 5.6 2.1e-09 37.8 5.6 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AA_kinase PF00696.28 gi|433589365|ref|YP_007278861.1| - 8.6e-48 163.0 2.1 8.6e-48 163.0 2.1 1.5 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.6 gi|433589365|ref|YP_007278861.1| - 3.8e-16 58.6 0.0 1.4e-07 31.2 0.0 2.6 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|433589365|ref|YP_007278861.1| - 2.4e-09 36.8 2.1 0.0023 17.6 0.1 3.5 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.6 gi|433589365|ref|YP_007278861.1| - 0.0046 16.9 0.3 2.5 8.1 0.0 2.8 3 0 0 3 3 3 2 ACT domain ACT_4 PF13291.6 gi|433589365|ref|YP_007278861.1| - 0.016 15.8 0.1 4.5 7.9 0.0 2.8 2 0 0 2 2 2 0 ACT domain SRP54_N PF02881.19 gi|433589365|ref|YP_007278861.1| - 0.062 13.5 0.0 0.2 11.9 0.0 1.9 1 0 0 1 1 1 0 SRP54-type protein, helical bundle domain AP_endonuc_2 PF01261.24 gi|433589365|ref|YP_007278861.1| - 0.1 12.0 0.0 0.29 10.5 0.0 1.7 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel TctC PF03401.14 gi|433589365|ref|YP_007278861.1| - 0.15 11.1 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor Beta_elim_lyase PF01212.21 gi|433589367|ref|YP_007278863.1| - 5.9e-71 239.1 0.0 9.6e-71 238.4 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase UPF0180 PF03698.13 gi|433589367|ref|YP_007278863.1| - 0.15 12.3 0.0 31 4.8 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Acetyltransf_1 PF00583.25 gi|433589369|ref|YP_007278865.1| - 4.2e-11 43.1 0.0 5.5e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|433589369|ref|YP_007278865.1| - 9.1e-09 35.6 0.0 1.3e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433589369|ref|YP_007278865.1| - 6.6e-07 29.3 0.0 8e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|433589369|ref|YP_007278865.1| - 0.0008 19.1 0.5 0.0008 19.1 0.5 1.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_9 PF13527.7 gi|433589369|ref|YP_007278865.1| - 0.0014 18.7 0.0 0.011 15.9 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|433589369|ref|YP_007278865.1| - 0.18 11.9 0.1 0.36 11.0 0.0 1.5 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase FapA PF03961.13 gi|433589371|ref|YP_007278867.1| - 9.7 4.7 11.1 6.4 5.3 9.6 1.3 1 1 0 1 1 1 0 Flagellar Assembly Protein A Rep_fac_C PF08542.11 gi|433589372|ref|YP_007278868.1| - 1.1e-23 83.4 0.0 2.5e-23 82.3 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|433589372|ref|YP_007278868.1| - 6.4e-20 71.9 0.0 4.9e-18 65.8 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|433589372|ref|YP_007278868.1| - 9.4e-16 58.0 0.0 2.5e-11 43.6 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rad17 PF03215.15 gi|433589372|ref|YP_007278868.1| - 8.5e-07 29.1 0.0 1.7e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|433589372|ref|YP_007278868.1| - 1.6e-06 28.6 0.2 0.0039 17.6 0.0 2.9 2 1 1 3 3 3 2 AAA ATPase domain AAA_14 PF13173.6 gi|433589372|ref|YP_007278868.1| - 6.6e-06 26.2 0.0 1.1e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|433589372|ref|YP_007278868.1| - 8.9e-06 25.5 0.0 0.00012 21.9 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|433589372|ref|YP_007278868.1| - 1.1e-05 25.6 0.6 4.4e-05 23.8 0.3 2.1 1 1 1 2 2 2 1 AAA C-terminal domain AAA_22 PF13401.6 gi|433589372|ref|YP_007278868.1| - 2.8e-05 24.4 0.1 0.31 11.3 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|433589372|ref|YP_007278868.1| - 0.00013 21.8 0.0 0.001 19.0 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|433589372|ref|YP_007278868.1| - 0.00045 20.0 0.0 0.019 14.7 0.0 2.4 1 1 0 1 1 1 1 Sigma-54 interaction domain DNA_pol3_delta PF06144.13 gi|433589372|ref|YP_007278868.1| - 0.00047 20.0 0.0 0.00091 19.0 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_18 PF13238.6 gi|433589372|ref|YP_007278868.1| - 0.00061 20.3 0.0 0.0019 18.7 0.0 2.0 2 1 0 2 2 1 1 AAA domain Mg_chelatase PF01078.21 gi|433589372|ref|YP_007278868.1| - 0.00081 18.8 0.0 0.16 11.3 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|433589372|ref|YP_007278868.1| - 0.001 18.6 0.0 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_5 PF07728.14 gi|433589372|ref|YP_007278868.1| - 0.0015 18.6 0.0 0.0088 16.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) ResIII PF04851.15 gi|433589372|ref|YP_007278868.1| - 0.0022 18.0 0.0 0.013 15.5 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.18 gi|433589372|ref|YP_007278868.1| - 0.0052 16.5 0.0 0.0086 15.8 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|433589372|ref|YP_007278868.1| - 0.0056 16.2 0.0 0.24 10.8 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.6 gi|433589372|ref|YP_007278868.1| - 0.0069 16.1 1.1 0.014 15.1 0.1 2.1 2 2 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|433589372|ref|YP_007278868.1| - 0.0071 16.1 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activ_2 PF14532.6 gi|433589372|ref|YP_007278868.1| - 0.0086 16.2 0.0 0.025 14.7 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain TIP49 PF06068.13 gi|433589372|ref|YP_007278868.1| - 0.009 15.3 0.0 0.044 13.0 0.0 2.0 1 1 1 2 2 2 1 TIP49 P-loop domain AAA_25 PF13481.6 gi|433589372|ref|YP_007278868.1| - 0.025 14.2 0.6 0.12 11.9 0.0 2.2 1 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|433589372|ref|YP_007278868.1| - 0.029 14.8 0.0 0.063 13.7 0.0 1.7 1 1 0 1 1 1 0 RNA helicase DEAD PF00270.29 gi|433589372|ref|YP_007278868.1| - 0.031 14.1 0.6 7.7 6.2 0.0 2.8 2 1 0 3 3 3 0 DEAD/DEAH box helicase AAA_2 PF07724.14 gi|433589372|ref|YP_007278868.1| - 0.034 14.3 0.0 0.11 12.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) T2SSE PF00437.20 gi|433589372|ref|YP_007278868.1| - 0.039 13.0 0.0 0.08 12.0 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|433589372|ref|YP_007278868.1| - 0.042 13.8 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|433589372|ref|YP_007278868.1| - 0.049 13.8 0.1 0.14 12.4 0.1 1.9 2 1 0 2 2 2 0 AAA domain SNF2_N PF00176.23 gi|433589372|ref|YP_007278868.1| - 0.062 12.0 0.0 0.089 11.5 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain DUF815 PF05673.13 gi|433589372|ref|YP_007278868.1| - 0.083 12.0 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TniB PF05621.11 gi|433589372|ref|YP_007278868.1| - 0.1 12.0 0.0 0.5 9.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein AAA_19 PF13245.6 gi|433589372|ref|YP_007278868.1| - 0.11 12.8 0.0 0.25 11.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain TetR_C_12 PF16914.5 gi|433589372|ref|YP_007278868.1| - 0.13 12.4 0.4 0.35 11.0 0.1 1.9 2 0 0 2 2 1 0 Bacterial transcriptional repressor C-terminal AAA_11 PF13086.6 gi|433589372|ref|YP_007278868.1| - 0.15 11.9 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain GAF_2 PF13185.6 gi|433589373|ref|YP_007278869.1| - 2.4e-09 37.6 0.3 2.4e-09 37.6 0.3 3.0 3 0 0 3 3 3 1 GAF domain PAS_8 PF13188.7 gi|433589373|ref|YP_007278869.1| - 2.5e-08 33.7 0.4 3.4e-05 23.8 0.0 3.9 4 0 0 4 4 4 1 PAS domain GAF PF01590.26 gi|433589373|ref|YP_007278869.1| - 4.2e-08 33.9 2.9 9e-08 32.8 0.2 2.5 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.10 gi|433589373|ref|YP_007278869.1| - 4.6e-05 23.6 0.3 4.6e-05 23.6 0.3 3.4 3 1 1 4 4 4 1 PAS fold PAS_9 PF13426.7 gi|433589373|ref|YP_007278869.1| - 0.0021 18.3 0.0 0.0053 17.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain APG6_N PF17675.1 gi|433589373|ref|YP_007278869.1| - 2.5 8.6 6.3 0.17 12.4 0.8 1.8 3 0 0 3 3 3 0 Apg6 coiled-coil region DUF4140 PF13600.6 gi|433589373|ref|YP_007278869.1| - 2.7 8.5 9.5 6.2 7.3 2.0 3.7 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) TMF_TATA_bd PF12325.8 gi|433589373|ref|YP_007278869.1| - 6 7.1 6.3 0.42 10.8 0.7 1.9 3 0 0 3 3 3 0 TATA element modulatory factor 1 TATA binding ECF_trnsprt PF12822.7 gi|433589374|ref|YP_007278870.1| - 2.6 8.1 9.9 7 6.7 9.9 1.9 1 1 0 1 1 1 0 ECF transporter, substrate-specific component tRNA-synt_2c PF01411.19 gi|433589376|ref|YP_007278872.1| - 1e-115 387.4 0.0 1.3e-115 387.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|433589376|ref|YP_007278872.1| - 1.1e-18 68.0 2.9 2.6e-18 66.7 2.9 1.7 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|433589376|ref|YP_007278872.1| - 2.6e-12 46.6 0.9 2.6e-12 46.6 0.9 1.8 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain Apolipoprotein PF01442.18 gi|433589376|ref|YP_007278872.1| - 0.27 11.1 4.7 0.46 10.3 0.0 2.8 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain AIF-MLS PF14962.6 gi|433589376|ref|YP_007278872.1| - 2.6 7.9 4.8 7.6 6.5 4.8 1.8 1 0 0 1 1 1 0 Mitochondria Localisation Sequence UPF0175 PF03683.13 gi|433589377|ref|YP_007278873.1| - 2.9e-09 36.5 2.0 6e-09 35.5 2.0 1.7 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) T3SS_ExsE PF18286.1 gi|433589377|ref|YP_007278873.1| - 0.0044 16.9 0.1 0.0075 16.2 0.1 1.5 1 0 0 1 1 1 1 Type III secretion system ExsE DFRP_C PF16543.5 gi|433589377|ref|YP_007278873.1| - 0.014 15.9 0.6 0.014 15.8 0.6 1.2 1 0 0 1 1 1 0 DRG Family Regulatory Proteins, Tma46 GYF_2 PF14237.6 gi|433589377|ref|YP_007278873.1| - 0.03 14.1 0.6 2 8.3 0.1 2.5 1 1 1 2 2 2 0 GYF domain 2 CoA_transf_3 PF02515.17 gi|433589377|ref|YP_007278873.1| - 0.073 12.2 0.2 0.076 12.1 0.2 1.0 1 0 0 1 1 1 0 CoA-transferase family III DUF3368 PF11848.8 gi|433589378|ref|YP_007278874.1| - 2.1e-15 56.2 0.0 1.2e-14 53.8 0.0 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF3368) Putative_PNPOx PF01243.20 gi|433589378|ref|YP_007278874.1| - 0.037 14.2 0.0 0.071 13.3 0.0 1.5 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Abhydrolase_1 PF00561.20 gi|433589379|ref|YP_007278875.1| - 1.1e-16 61.3 0.0 9.1e-11 41.9 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433589379|ref|YP_007278875.1| - 9.2e-14 52.6 13.6 1.1e-13 52.3 13.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433589379|ref|YP_007278875.1| - 3.8e-09 36.2 0.0 3.5e-08 33.0 0.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Rep_1B PF17873.1 gi|433589379|ref|YP_007278875.1| - 0.086 12.7 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Replicase polyprotein 1ab AMP-binding PF00501.28 gi|433589380|ref|YP_007278876.1| - 1.9e-37 128.9 0.1 2.4e-20 72.5 0.0 2.1 2 0 0 2 2 2 2 AMP-binding enzyme GATase PF00117.28 gi|433589381|ref|YP_007278877.1| - 5.7e-20 71.9 0.0 8e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|433589381|ref|YP_007278877.1| - 1.4e-06 28.2 0.3 7.5e-05 22.6 0.3 2.3 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.16 gi|433589381|ref|YP_007278877.1| - 0.029 13.3 0.2 0.22 10.4 0.2 2.3 1 1 0 1 1 1 0 Homoserine O-succinyltransferase DJ-1_PfpI PF01965.24 gi|433589381|ref|YP_007278877.1| - 0.033 14.0 0.0 0.05 13.4 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family GATase_3 PF07685.14 gi|433589381|ref|YP_007278877.1| - 0.078 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain AsiA PF09010.10 gi|433589382|ref|YP_007278878.1| - 0.023 14.8 0.0 0.03 14.4 0.0 1.2 1 0 0 1 1 1 0 Anti-Sigma Factor A UvrB_inter PF17757.1 gi|433589382|ref|YP_007278878.1| - 0.063 13.5 0.0 0.1 12.8 0.0 1.6 1 1 0 1 1 1 0 UvrB interaction domain PIN PF01850.21 gi|433589383|ref|YP_007278879.1| - 2.2e-10 41.1 0.1 3.3e-10 40.5 0.1 1.2 1 0 0 1 1 1 1 PIN domain CCG PF02754.16 gi|433589384|ref|YP_007278880.1| - 2.7e-15 56.3 0.0 7.5e-11 42.1 0.1 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|433589384|ref|YP_007278880.1| - 5.6e-10 39.2 10.0 1.8e-07 31.1 11.4 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|433589384|ref|YP_007278880.1| - 1.9e-09 37.8 4.8 1.9e-09 37.8 4.8 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|433589384|ref|YP_007278880.1| - 2.7e-09 36.5 13.1 5.4e-05 22.8 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|433589384|ref|YP_007278880.1| - 8e-09 35.5 5.6 1.7e-08 34.4 3.9 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|433589384|ref|YP_007278880.1| - 1.7e-07 30.9 12.0 0.00025 20.9 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|433589384|ref|YP_007278880.1| - 1.6e-06 28.6 21.8 2.5e-06 28.0 10.9 2.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|433589384|ref|YP_007278880.1| - 4.1e-05 23.6 11.0 0.0084 16.2 0.4 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|433589384|ref|YP_007278880.1| - 4.6e-05 23.9 8.4 4.6e-05 23.9 8.4 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|433589384|ref|YP_007278880.1| - 0.00014 22.0 0.6 0.34 11.1 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|433589384|ref|YP_007278880.1| - 0.00025 21.9 11.1 0.01 16.8 12.6 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|433589384|ref|YP_007278880.1| - 0.00032 20.6 22.8 0.00077 19.4 3.7 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|433589384|ref|YP_007278880.1| - 0.00062 20.1 17.8 0.0034 17.8 0.7 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|433589384|ref|YP_007278880.1| - 0.003 18.4 6.2 0.055 14.3 0.2 3.0 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|433589384|ref|YP_007278880.1| - 0.076 13.6 14.3 0.51 10.9 0.9 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|433589384|ref|YP_007278880.1| - 3.4 8.8 24.4 0.89 10.6 4.3 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|433589384|ref|YP_007278880.1| - 7.8 7.3 16.6 0.73 10.6 0.8 3.5 3 1 0 3 3 3 0 4Fe-4S single cluster domain zf-C4H2 PF10146.9 gi|433589385|ref|YP_007278881.1| - 0.13 12.5 1.4 0.21 11.8 0.9 1.4 1 1 0 1 1 1 0 Zinc finger-containing protein Neurensin PF14927.6 gi|433589386|ref|YP_007278882.1| - 2 8.1 4.4 0.51 10.0 1.2 1.7 1 1 1 2 2 2 0 Neurensin Cas_Cas4 PF01930.17 gi|433589388|ref|YP_007278884.1| - 3.9e-06 27.1 0.0 7.4e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|433589388|ref|YP_007278884.1| - 0.14 12.0 5.6 2.6 7.9 0.3 2.6 2 2 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Sua5_yciO_yrdC PF01300.18 gi|433589390|ref|YP_007278886.1| - 7.5e-51 172.2 0.0 8.5e-51 172.0 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination AhpC-TSA PF00578.21 gi|433589391|ref|YP_007278887.1| - 5.9e-12 45.6 0.0 7.2e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|433589391|ref|YP_007278887.1| - 5.5e-07 29.4 0.0 9.6e-07 28.6 0.0 1.6 1 1 0 1 1 1 1 Redoxin GST_N_3 PF13417.6 gi|433589392|ref|YP_007278888.1| - 3.5e-13 49.8 0.0 4.3e-13 49.5 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|433589392|ref|YP_007278888.1| - 7.6e-12 45.3 0.1 1.1e-11 44.7 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|433589392|ref|YP_007278888.1| - 1.1e-10 41.6 0.0 1.3e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|433589392|ref|YP_007278888.1| - 0.00035 20.8 0.0 0.00044 20.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|433589392|ref|YP_007278888.1| - 0.023 15.1 0.1 0.033 14.6 0.1 1.5 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) FRD2 PF03197.13 gi|433589392|ref|YP_007278888.1| - 0.045 14.1 0.0 0.053 13.8 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage FRD2 protein DUF21 PF01595.20 gi|433589393|ref|YP_007278889.1| - 4.2e-48 163.4 0.7 5.9e-48 162.9 0.7 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|433589393|ref|YP_007278889.1| - 5.9e-21 74.3 2.5 5.9e-21 74.3 2.5 2.1 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|433589393|ref|YP_007278889.1| - 1.3e-13 51.2 2.2 3.9e-06 27.2 0.1 2.7 2 0 0 2 2 2 2 CBS domain Yip1 PF04893.17 gi|433589393|ref|YP_007278889.1| - 0.036 13.8 3.2 0.054 13.2 3.2 1.3 1 0 0 1 1 1 0 Yip1 domain PHB_acc_N PF07879.11 gi|433589393|ref|YP_007278889.1| - 0.037 14.1 0.0 0.12 12.4 0.0 1.8 1 0 0 1 1 1 0 PHB/PHA accumulation regulator DNA-binding domain MS_channel PF00924.18 gi|433589393|ref|YP_007278889.1| - 9.3 5.7 13.0 6.1 6.3 6.6 2.5 2 0 0 2 2 2 0 Mechanosensitive ion channel Yip1 PF04893.17 gi|433589394|ref|YP_007278890.1| - 0.00052 19.8 3.6 0.34 10.6 0.0 2.2 2 0 0 2 2 2 2 Yip1 domain Abhydrolase_9_N PF15420.6 gi|433589394|ref|YP_007278890.1| - 0.3 11.0 10.7 0.59 10.1 10.7 1.5 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus VirB3 PF05101.13 gi|433589394|ref|YP_007278890.1| - 5.4 7.3 6.6 10 6.5 0.1 2.6 2 2 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein LptF_LptG PF03739.14 gi|433589394|ref|YP_007278890.1| - 5.8 5.7 7.4 0.39 9.5 1.0 1.9 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG PHO4 PF01384.20 gi|433589395|ref|YP_007278891.1| - 6.3e-43 147.1 39.8 8.7e-43 146.7 39.8 1.2 1 0 0 1 1 1 1 Phosphate transporter family Tape_meas_lam_C PF09718.10 gi|433589397|ref|YP_007278893.1| - 0.025 14.7 0.6 0.16 12.1 0.2 2.2 2 0 0 2 2 2 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) GPW_gp25 PF04965.14 gi|433589397|ref|YP_007278893.1| - 0.072 12.9 0.1 0.19 11.5 0.1 1.7 1 0 0 1 1 1 0 Gene 25-like lysozyme DUF3150 PF11348.8 gi|433589397|ref|YP_007278893.1| - 0.56 9.4 3.6 9.8 5.3 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3150) DUF4337 PF14235.6 gi|433589397|ref|YP_007278893.1| - 4.8 7.3 5.6 1.3 9.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Mannitol_dh_C PF08125.13 gi|433589398|ref|YP_007278894.1| - 0.15 11.5 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain UPRTase PF14681.6 gi|433589399|ref|YP_007278895.1| - 4.1e-48 163.6 0.0 4.8e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|433589399|ref|YP_007278895.1| - 8e-10 38.5 0.2 1.1e-09 38.0 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Cupin_2 PF07883.11 gi|433589400|ref|YP_007278896.1| - 5.7e-11 42.0 0.1 8.9e-11 41.3 0.1 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|433589400|ref|YP_007278896.1| - 0.00015 21.4 0.0 0.00022 20.9 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|433589400|ref|YP_007278896.1| - 0.0014 18.6 0.0 0.0016 18.3 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase KduI PF04962.12 gi|433589400|ref|YP_007278896.1| - 0.0016 17.8 0.0 0.0018 17.6 0.0 1.0 1 0 0 1 1 1 1 KduI/IolB family AraC_binding_2 PF14525.6 gi|433589400|ref|YP_007278896.1| - 0.013 15.2 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Auxin_BP PF02041.16 gi|433589400|ref|YP_007278896.1| - 0.021 14.5 0.0 0.026 14.2 0.0 1.2 1 1 0 1 1 1 0 Auxin binding protein Cupin_3 PF05899.12 gi|433589400|ref|YP_007278896.1| - 0.024 14.3 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|433589400|ref|YP_007278896.1| - 0.027 14.7 0.0 0.036 14.3 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like AraC_binding PF02311.19 gi|433589400|ref|YP_007278896.1| - 0.046 13.6 0.0 0.058 13.3 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_7 PF12973.7 gi|433589400|ref|YP_007278896.1| - 0.047 13.6 0.0 0.059 13.3 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain DDE_Tnp_IS1595 PF12762.7 gi|433589402|ref|YP_007278898.1| - 5.4e-21 75.2 0.0 7.3e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain DUF2089 PF09862.9 gi|433589402|ref|YP_007278898.1| - 0.055 13.5 0.0 0.091 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) DDE_3 PF13358.6 gi|433589403|ref|YP_007278899.1| - 1.4e-14 54.1 0.0 1.2e-13 51.0 0.0 2.1 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|433589403|ref|YP_007278899.1| - 2.3e-11 44.1 0.3 8.1e-11 42.4 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|433589403|ref|YP_007278899.1| - 5.8e-10 39.1 0.0 1.7e-09 37.5 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433589403|ref|YP_007278899.1| - 1.1e-06 28.2 0.0 2.7e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|433589403|ref|YP_007278899.1| - 1e-05 25.0 0.0 7.5e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|433589403|ref|YP_007278899.1| - 0.00016 21.7 0.0 0.00042 20.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|433589403|ref|YP_007278899.1| - 0.0019 18.2 0.1 0.0036 17.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase DDE_1 PF03184.19 gi|433589403|ref|YP_007278899.1| - 0.0023 17.6 0.0 0.004 16.8 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF746 PF05344.11 gi|433589403|ref|YP_007278899.1| - 0.017 15.0 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) rve PF00665.26 gi|433589403|ref|YP_007278899.1| - 0.054 13.7 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain LZ_Tnp_IS481 PF13011.6 gi|433589403|ref|YP_007278899.1| - 0.1 13.2 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 DDE_Tnp_1 PF01609.21 gi|433589404|ref|YP_007278900.1| - 3.2e-10 40.0 3.3 4.9e-10 39.4 3.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433589404|ref|YP_007278900.1| - 0.17 11.9 0.5 0.48 10.5 0.3 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) bPH_6 PF10756.9 gi|433589405|ref|YP_007278901.1| - 0.017 15.2 0.9 0.017 15.2 0.9 1.9 2 0 0 2 2 2 0 Bacterial PH domain UPF0029 PF01205.19 gi|433589406|ref|YP_007278902.1| - 4.5e-30 104.1 0.0 6.1e-30 103.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|433589406|ref|YP_007278902.1| - 2.7e-11 43.2 0.2 9.8e-11 41.4 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|433589406|ref|YP_007278902.1| - 0.0012 18.8 0.0 0.0034 17.4 0.0 1.7 2 0 0 2 2 2 1 Elongation factor G C-terminus ACT_7 PF13840.6 gi|433589408|ref|YP_007278904.1| - 0.00021 21.0 0.1 0.00065 19.4 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|433589408|ref|YP_007278904.1| - 0.00054 19.7 1.1 0.0011 18.6 0.2 2.2 2 1 0 2 2 2 1 ACT domain Lar_restr_allev PF14354.6 gi|433589409|ref|YP_007278905.1| - 0.017 15.5 0.1 0.049 14.0 0.1 1.9 1 0 0 1 1 1 0 Restriction alleviation protein Lar Med3 PF11593.8 gi|433589409|ref|YP_007278905.1| - 0.15 11.2 1.6 0.19 10.9 1.6 1.1 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal Nop14 PF04147.12 gi|433589409|ref|YP_007278905.1| - 3.1 5.9 6.5 3.7 5.6 6.5 1.0 1 0 0 1 1 1 0 Nop14-like family IGPD PF00475.18 gi|433589410|ref|YP_007278906.1| - 1.9e-58 196.8 1.9 1.9e-58 196.8 0.9 1.4 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase ClpS PF02617.17 gi|433589410|ref|YP_007278906.1| - 0.036 13.9 0.2 11 5.9 0.0 2.5 2 0 0 2 2 2 0 ATP-dependent Clp protease adaptor protein ClpS His_biosynth PF00977.21 gi|433589412|ref|YP_007278908.1| - 3e-75 252.6 4.6 3.4e-75 252.4 4.6 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|433589412|ref|YP_007278908.1| - 3.7e-12 46.1 0.6 4.9e-09 35.8 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.17 gi|433589412|ref|YP_007278908.1| - 6.8e-11 41.8 0.1 0.0001 21.5 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|433589412|ref|YP_007278908.1| - 1.6e-08 34.2 5.9 0.0007 19.0 0.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|433589412|ref|YP_007278908.1| - 3.9e-07 29.2 3.4 0.00066 18.6 0.2 2.3 2 1 0 2 2 2 2 Tryptophan synthase alpha chain NMO PF03060.15 gi|433589412|ref|YP_007278908.1| - 5.9e-06 25.9 12.8 0.00042 19.8 5.1 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase IMPDH PF00478.25 gi|433589412|ref|YP_007278908.1| - 6.7e-06 25.3 4.5 0.00088 18.4 1.0 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain IGPS PF00218.21 gi|433589412|ref|YP_007278908.1| - 8.3e-06 25.1 0.2 0.0008 18.7 0.0 3.1 3 1 1 4 4 4 1 Indole-3-glycerol phosphate synthase G3P_antiterm PF04309.12 gi|433589412|ref|YP_007278908.1| - 4.2e-05 23.0 0.5 0.0016 17.9 0.1 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator NanE PF04131.14 gi|433589412|ref|YP_007278908.1| - 6.7e-05 22.2 2.2 0.0029 16.8 0.4 2.5 1 1 2 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.17 gi|433589412|ref|YP_007278908.1| - 0.00016 21.1 2.2 0.0041 16.5 0.4 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase FMN_dh PF01070.18 gi|433589412|ref|YP_007278908.1| - 0.014 14.5 11.4 0.032 13.3 3.1 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase TBP-binding PF09247.11 gi|433589412|ref|YP_007278908.1| - 0.024 14.9 0.0 0.044 14.0 0.0 1.4 1 0 0 1 1 1 0 TATA box-binding protein binding CoA_binding_2 PF13380.6 gi|433589412|ref|YP_007278908.1| - 0.06 13.8 2.6 0.25 11.8 0.2 2.4 1 1 0 2 2 2 0 CoA binding domain Ribul_P_3_epim PF00834.19 gi|433589412|ref|YP_007278908.1| - 0.14 11.5 0.2 0.14 11.5 0.2 2.3 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family DUF5082 PF16888.5 gi|433589413|ref|YP_007278909.1| - 0.026 14.8 0.5 0.034 14.4 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) CSN4_RPN5_eIF3a PF18420.1 gi|433589413|ref|YP_007278909.1| - 0.11 12.7 0.5 0.3 11.3 0.5 1.7 1 0 0 1 1 1 0 CSN4/RPN5/eIF3a helix turn helix domain Phasin PF05597.11 gi|433589413|ref|YP_007278909.1| - 0.27 11.2 2.7 0.39 10.7 2.7 1.1 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) PHO4 PF01384.20 gi|433589414|ref|YP_007278910.1| - 3.8e-40 138.0 29.1 1.1e-39 136.5 29.0 1.7 1 1 0 1 1 1 1 Phosphate transporter family SpoVS PF04232.12 gi|433589414|ref|YP_007278910.1| - 0.041 13.6 3.4 0.13 12.0 0.6 3.0 2 1 1 3 3 3 0 Stage V sporulation protein S (SpoVS) Usp PF00582.26 gi|433589415|ref|YP_007278911.1| - 7.7e-21 75.1 1.8 9.1e-21 74.8 1.8 1.1 1 0 0 1 1 1 1 Universal stress protein family PHO4 PF01384.20 gi|433589416|ref|YP_007278912.1| - 1.8e-37 129.2 31.6 5.5e-37 127.6 31.6 1.7 1 1 0 1 1 1 1 Phosphate transporter family SpoVS PF04232.12 gi|433589416|ref|YP_007278912.1| - 1.2 8.9 3.7 0.64 9.8 0.3 2.3 2 1 1 3 3 3 0 Stage V sporulation protein S (SpoVS) Fer2 PF00111.27 gi|433589417|ref|YP_007278913.1| - 8.6e-15 54.5 0.5 1.3e-14 53.9 0.5 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|433589417|ref|YP_007278913.1| - 0.056 13.5 0.2 0.11 12.5 0.2 1.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Ribonuc_L-PSP PF01042.21 gi|433589418|ref|YP_007278914.1| - 1.1e-16 60.9 0.0 1.3e-16 60.7 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP HTH_20 PF12840.7 gi|433589419|ref|YP_007278915.1| - 1.3e-11 44.4 1.0 2.3e-11 43.6 1.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433589419|ref|YP_007278915.1| - 1.9e-07 30.8 0.7 3.9e-07 29.8 0.4 1.7 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|433589419|ref|YP_007278915.1| - 0.00013 22.4 0.1 0.00022 21.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|433589419|ref|YP_007278915.1| - 0.0013 18.5 0.1 0.0032 17.3 0.1 1.6 1 1 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433589419|ref|YP_007278915.1| - 0.0018 18.2 0.0 0.0035 17.2 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|433589419|ref|YP_007278915.1| - 0.0051 16.5 0.0 0.013 15.2 0.0 1.6 1 1 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_34 PF13601.6 gi|433589419|ref|YP_007278915.1| - 0.047 13.9 0.0 0.088 13.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain PaaX PF07848.12 gi|433589419|ref|YP_007278915.1| - 0.053 13.8 0.1 0.082 13.1 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein RP-C PF03428.13 gi|433589419|ref|YP_007278915.1| - 0.081 12.6 0.1 0.11 12.2 0.1 1.4 1 1 0 1 1 1 0 Replication protein C N-terminal domain SBF PF01758.16 gi|433589420|ref|YP_007278916.1| - 3.1e-54 183.6 7.1 3.1e-54 183.6 7.1 2.0 2 0 0 2 2 2 1 Sodium Bile acid symporter family LMWPc PF01451.21 gi|433589421|ref|YP_007278917.1| - 1.9e-28 99.6 0.0 4.1e-28 98.5 0.0 1.5 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase TetR_C_15 PF17918.1 gi|433589421|ref|YP_007278917.1| - 0.0026 18.5 0.4 0.98 10.2 0.0 2.6 2 1 1 3 3 3 2 Tetracyclin repressor-like, C-terminal domain HPP PF04982.13 gi|433589422|ref|YP_007278918.1| - 8.1e-18 64.8 11.6 1.3e-17 64.1 11.6 1.3 1 0 0 1 1 1 1 HPP family Chlam_vir PF05475.11 gi|433589422|ref|YP_007278918.1| - 0.28 10.9 1.6 1.7 8.4 0.3 2.0 1 1 1 2 2 2 0 Pgp3 C-terminal domain Arc_PepC_II PF06847.11 gi|433589423|ref|YP_007278919.1| - 9.4e-13 48.5 0.2 4.6e-10 39.9 0.1 3.0 4 0 0 4 4 4 2 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|433589423|ref|YP_007278919.1| - 1.1e-05 25.7 11.2 1.1e-05 25.7 11.2 1.7 2 1 0 2 2 2 1 Type IV leader peptidase family DUF3040 PF11239.8 gi|433589424|ref|YP_007278920.1| - 0.39 11.0 5.6 0.52 10.6 5.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) DUF3099 PF11298.8 gi|433589424|ref|YP_007278920.1| - 6.3 7.0 5.9 4.9 7.4 4.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3099) PKcGMP_CC PF16808.5 gi|433589425|ref|YP_007278921.1| - 0.6 10.0 2.4 0.46 10.4 0.4 1.8 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase HIT PF01230.23 gi|433589426|ref|YP_007278922.1| - 3.3e-28 98.3 0.0 4e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|433589426|ref|YP_007278922.1| - 4.1e-17 62.7 0.0 5.1e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|433589426|ref|YP_007278922.1| - 0.055 13.3 0.0 0.078 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 UDG PF03167.19 gi|433589427|ref|YP_007278923.1| - 1.6e-27 96.4 0.0 2.1e-27 96.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily UPF0253 PF06786.12 gi|433589427|ref|YP_007278923.1| - 0.18 12.1 0.0 1.1 9.6 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) TetR_C_18 PF17923.1 gi|433589429|ref|YP_007278925.1| - 0.088 13.3 0.0 0.1 13.1 0.0 1.1 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain PsbX PF06596.11 gi|433589429|ref|YP_007278925.1| - 0.14 12.1 2.6 0.33 11.0 2.6 1.7 1 0 0 1 1 1 0 Photosystem II reaction centre X protein (PsbX) tRNA-synt_1 PF00133.22 gi|433589430|ref|YP_007278926.1| - 1.8e-173 578.1 0.6 2.2e-173 577.8 0.6 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|433589430|ref|YP_007278926.1| - 3.8e-31 108.1 0.1 7.5e-31 107.1 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|433589430|ref|YP_007278926.1| - 2.6e-26 92.3 0.4 8.5e-11 41.2 0.0 3.7 2 2 1 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|433589430|ref|YP_007278926.1| - 0.0028 17.2 0.0 0.0095 15.5 0.0 1.8 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|433589430|ref|YP_007278926.1| - 0.008 15.6 0.0 0.4 10.0 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain Peptidase_M61 PF05299.12 gi|433589431|ref|YP_007278927.1| - 0.056 13.9 0.6 0.14 12.6 0.6 1.6 1 1 0 1 1 1 0 M61 glycyl aminopeptidase Peptidase_M9 PF01752.17 gi|433589431|ref|YP_007278927.1| - 0.15 11.2 0.3 0.25 10.5 0.3 1.2 1 0 0 1 1 1 0 Collagenase DUF1155 PF06633.11 gi|433589431|ref|YP_007278927.1| - 0.15 11.5 0.9 0.56 9.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1155) Big_3_5 PF16640.5 gi|433589431|ref|YP_007278927.1| - 0.51 10.6 11.4 0.084 13.1 1.4 3.3 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) HNOB PF07700.15 gi|433589432|ref|YP_007278928.1| - 3.2e-26 92.2 0.0 3.6e-26 92.1 0.0 1.0 1 0 0 1 1 1 1 Haem-NO-binding V4R PF02830.18 gi|433589432|ref|YP_007278928.1| - 2.2e-05 24.4 0.0 3.9e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 V4R domain MetOD1 PF18546.1 gi|433589432|ref|YP_007278928.1| - 0.017 15.1 0.0 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 Metanogen output domain 1 BAT PF15915.5 gi|433589432|ref|YP_007278928.1| - 0.023 14.6 2.5 0.72 9.7 0.6 2.7 1 1 2 3 3 3 0 GAF and HTH_10 associated domain Pribosyltran_N PF13793.6 gi|433589433|ref|YP_007278929.1| - 6.9e-20 71.1 0.0 6.1e-18 64.9 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|433589433|ref|YP_007278929.1| - 3.5e-12 46.1 1.3 5e-11 42.4 0.2 2.4 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|433589433|ref|YP_007278929.1| - 4.1e-08 33.5 0.9 9.7e-08 32.3 0.6 1.6 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|433589433|ref|YP_007278929.1| - 1.3e-05 24.8 0.1 2.2e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|433589433|ref|YP_007278929.1| - 0.011 15.3 0.2 0.022 14.3 0.2 1.6 1 1 0 1 1 1 0 Phosphoribosyl transferase PQQ_3 PF13570.6 gi|433589435|ref|YP_007278931.1| - 5 7.8 12.0 12 6.5 0.1 4.3 4 0 0 4 4 4 0 PQQ-like domain PGM_PMM_I PF02878.16 gi|433589436|ref|YP_007278932.1| - 4.3e-38 130.1 0.1 7.4e-38 129.4 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|433589436|ref|YP_007278932.1| - 5.1e-30 104.1 2.7 1.1e-29 103.1 0.1 2.7 4 0 0 4 4 4 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|433589436|ref|YP_007278932.1| - 1.2e-15 57.7 0.0 2.4e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|433589436|ref|YP_007278932.1| - 3.4e-15 56.0 0.3 1.2e-14 54.2 0.3 2.0 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Usp PF00582.26 gi|433589437|ref|YP_007278933.1| - 1.2e-27 97.2 3.0 1.3e-27 97.0 3.0 1.0 1 0 0 1 1 1 1 Universal stress protein family CCDC117 PF15810.5 gi|433589438|ref|YP_007278934.1| - 0.0035 17.6 1.7 0.0072 16.6 1.7 1.5 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 117 GARP PF16731.5 gi|433589438|ref|YP_007278934.1| - 0.0089 15.7 5.4 0.0089 15.7 5.4 2.8 3 0 0 3 3 3 1 Glutamic acid/alanine-rich protein of Trypanosoma DUF982 PF06169.12 gi|433589438|ref|YP_007278934.1| - 2.9 8.0 8.0 3.1 7.9 0.1 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF982) Spc7 PF08317.11 gi|433589438|ref|YP_007278934.1| - 3.4 6.4 12.6 0.88 8.4 2.1 3.6 3 1 1 4 4 4 0 Spc7 kinetochore protein PRA-CH PF01502.18 gi|433589439|ref|YP_007278935.1| - 4.3e-35 119.4 0.1 6.9e-35 118.7 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Phage_holin_3_6 PF07332.11 gi|433589440|ref|YP_007278936.1| - 0.0019 18.2 2.5 0.002 18.1 2.5 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|433589440|ref|YP_007278936.1| - 0.05 12.4 0.3 0.047 12.5 0.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) RseC_MucC PF04246.12 gi|433589440|ref|YP_007278936.1| - 1.6 8.7 6.1 2 8.4 6.1 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF3040 PF11239.8 gi|433589440|ref|YP_007278936.1| - 1.9 8.8 7.2 3 8.2 7.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) DUF202 PF02656.15 gi|433589440|ref|YP_007278936.1| - 2.9 8.4 9.6 6.9 7.2 9.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF202) MazE_antitoxin PF04014.18 gi|433589441|ref|YP_007278937.1| - 1.5e-08 34.4 0.1 2.1e-08 33.9 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|433589441|ref|YP_007278937.1| - 0.02 15.3 0.0 0.031 14.7 0.0 1.3 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin PIN PF01850.21 gi|433589442|ref|YP_007278938.1| - 1.9e-12 47.8 0.2 2.3e-12 47.5 0.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|433589442|ref|YP_007278938.1| - 0.0027 18.5 0.1 0.0037 18.0 0.1 1.2 1 0 0 1 1 1 1 PIN domain AA_kinase PF00696.28 gi|433589442|ref|YP_007278938.1| - 0.12 12.0 0.1 6.3 6.3 0.0 2.0 2 0 0 2 2 2 0 Amino acid kinase family 2-Hacid_dh_C PF02826.19 gi|433589443|ref|YP_007278939.1| - 2.8e-59 199.5 0.0 7.8e-59 198.0 0.0 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|433589443|ref|YP_007278939.1| - 3.2e-36 123.9 1.0 5.8e-36 123.1 1.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|433589443|ref|YP_007278939.1| - 6.1e-07 29.1 1.9 1.4e-06 28.0 0.0 2.7 3 0 0 3 3 3 1 ACT domain IlvN PF07991.12 gi|433589443|ref|YP_007278939.1| - 0.00011 21.9 0.0 0.00069 19.2 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|433589443|ref|YP_007278939.1| - 0.00029 21.2 0.0 0.0013 19.1 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_C PF03720.15 gi|433589443|ref|YP_007278939.1| - 0.0019 18.6 0.0 0.0078 16.6 0.0 2.0 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|433589443|ref|YP_007278939.1| - 0.0025 18.0 0.1 0.012 15.8 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|433589443|ref|YP_007278939.1| - 0.019 15.2 0.2 0.11 12.7 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain AdoHcyase_NAD PF00670.21 gi|433589443|ref|YP_007278939.1| - 0.035 14.2 0.6 1.4 8.9 0.0 2.5 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|433589443|ref|YP_007278939.1| - 0.05 14.2 0.7 0.38 11.4 0.0 2.7 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Usp PF00582.26 gi|433589444|ref|YP_007278940.1| - 7.5e-34 117.3 2.5 8.5e-34 117.1 2.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|433589444|ref|YP_007278940.1| - 0.032 14.2 0.0 0.046 13.7 0.0 1.3 1 0 0 1 1 1 0 DNA photolyase CTD_bind PF04818.13 gi|433589444|ref|YP_007278940.1| - 0.036 14.9 0.0 0.063 14.1 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase II-binding domain. Dodecin PF07311.12 gi|433589444|ref|YP_007278940.1| - 0.13 12.5 0.4 0.32 11.3 0.0 1.8 2 0 0 2 2 2 0 Dodecin PAS_9 PF13426.7 gi|433589445|ref|YP_007278941.1| - 1.5e-24 86.2 0.0 1.8e-11 44.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|433589445|ref|YP_007278941.1| - 9.4e-24 83.8 0.3 2.5e-11 43.8 0.2 2.6 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|433589445|ref|YP_007278941.1| - 1.8e-20 73.0 0.0 7.5e-13 48.5 0.0 2.4 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|433589445|ref|YP_007278941.1| - 3.1e-15 56.6 0.0 7.7e-15 55.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|433589445|ref|YP_007278941.1| - 5.9e-13 48.5 0.1 5.5e-07 29.5 0.0 3.4 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.6 gi|433589445|ref|YP_007278941.1| - 1.8e-08 34.4 0.1 4e-08 33.3 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|433589445|ref|YP_007278941.1| - 1.5e-07 31.6 0.0 0.00016 21.9 0.0 2.7 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|433589445|ref|YP_007278941.1| - 0.00037 20.5 1.3 0.0017 18.4 1.2 2.2 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|433589445|ref|YP_007278941.1| - 0.015 15.5 0.0 1.4 9.1 0.0 2.8 3 0 0 3 3 3 0 PAS fold HisKA_4TM PF16926.5 gi|433589445|ref|YP_007278941.1| - 0.018 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase HAD PF12710.7 gi|433589446|ref|YP_007278942.1| - 3.4e-21 76.5 3.2 7.4e-21 75.4 3.2 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433589446|ref|YP_007278942.1| - 6.3e-13 49.5 13.0 8.2e-10 39.3 13.0 3.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|433589446|ref|YP_007278942.1| - 2.3e-10 40.6 0.6 1.9e-08 34.4 0.0 2.8 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|433589446|ref|YP_007278942.1| - 8.2e-06 26.0 0.2 0.00035 20.7 0.0 2.5 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|433589446|ref|YP_007278942.1| - 0.2 11.2 0.0 0.64 9.5 0.0 1.7 1 1 0 2 2 2 0 Pyrimidine 5'-nucleotidase (UMPH-1) Tad PF13400.6 gi|433589448|ref|YP_007278944.1| - 0.061 13.6 0.7 0.061 13.6 0.7 4.0 5 0 0 5 5 5 0 Putative Flp pilus-assembly TadE/G-like DUF3147 PF11345.8 gi|433589448|ref|YP_007278944.1| - 4.8 7.6 8.8 7.5 7.0 1.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3147) Abhydrolase_1 PF00561.20 gi|433589449|ref|YP_007278945.1| - 1.6e-25 90.2 0.0 7.8e-25 88.0 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|433589449|ref|YP_007278945.1| - 0.02 14.2 0.0 0.037 13.3 0.0 1.4 1 0 0 1 1 1 0 Serine aminopeptidase, S33 Cys_Met_Meta_PP PF01053.20 gi|433589450|ref|YP_007278946.1| - 3.4e-135 450.5 0.0 3.9e-135 450.3 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|433589450|ref|YP_007278946.1| - 4.7e-08 32.7 0.6 6.7e-08 32.2 0.6 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|433589450|ref|YP_007278946.1| - 6e-08 32.2 0.0 1.2e-07 31.2 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|433589450|ref|YP_007278946.1| - 0.00078 18.8 0.1 0.0017 17.7 0.1 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|433589450|ref|YP_007278946.1| - 0.00094 18.2 0.0 0.0015 17.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Sugarporin_N PF11471.8 gi|433589450|ref|YP_007278946.1| - 0.11 12.5 0.3 3.4 7.7 0.0 2.4 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension DrsE PF02635.15 gi|433589451|ref|YP_007278947.1| - 1.5e-10 41.4 0.0 2.1e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|433589451|ref|YP_007278947.1| - 0.067 13.1 0.1 0.077 12.9 0.1 1.3 1 1 0 1 1 1 0 DsrE/DsrF/DrsH-like family MFS_1 PF07690.16 gi|433589453|ref|YP_007278949.1| - 1.4e-32 113.0 52.3 1.9e-21 76.4 23.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TagF_N PF09867.9 gi|433589453|ref|YP_007278949.1| - 0.15 12.1 0.2 0.41 10.7 0.1 1.7 2 0 0 2 2 2 0 TagF N-terminal domain, Type VI secretion system-associated TAT_signal PF10518.9 gi|433589454|ref|YP_007278950.1| - 6.9e-05 22.5 5.3 9.4e-05 22.1 5.3 1.2 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF5405 PF17399.2 gi|433589454|ref|YP_007278950.1| - 0.088 13.1 0.0 0.13 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5405) Aminotran_5 PF00266.19 gi|433589455|ref|YP_007278951.1| - 1.8e-30 106.2 0.0 2.3e-30 105.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V TipAS PF07739.13 gi|433589455|ref|YP_007278951.1| - 0.21 12.1 2.3 1.2 9.6 0.4 2.9 2 1 2 4 4 4 0 TipAS antibiotic-recognition domain UCMA PF17085.5 gi|433589455|ref|YP_007278951.1| - 7.4 6.6 6.7 0.71 9.9 2.2 1.6 2 0 0 2 2 2 0 Unique cartilage matrix associated protein Peptidase_S8 PF00082.22 gi|433589457|ref|YP_007278953.1| - 7e-49 166.7 3.1 9.7e-49 166.2 3.1 1.2 1 0 0 1 1 1 1 Subtilase family MOFRL PF05161.13 gi|433589457|ref|YP_007278953.1| - 0.0033 17.6 0.4 0.01 16.0 0.4 1.8 1 0 0 1 1 1 1 MOFRL family eIF-1a PF01176.19 gi|433589458|ref|YP_007278954.1| - 1.1e-24 85.9 0.3 1.4e-24 85.6 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 ChapFlgA_N PF17656.1 gi|433589458|ref|YP_007278954.1| - 0.042 14.0 0.0 0.074 13.2 0.0 1.4 1 0 0 1 1 1 0 FlgA N-terminal domain Sclerostin PF05463.11 gi|433589458|ref|YP_007278954.1| - 0.13 12.0 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 Sclerostin (SOST) DUF1700 PF08006.11 gi|433589459|ref|YP_007278955.1| - 0.056 13.0 4.0 0.055 13.0 4.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF2065 PF09838.9 gi|433589459|ref|YP_007278955.1| - 1.4 9.0 11.5 3.8 7.6 1.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) DUF460 PF04312.13 gi|433589460|ref|YP_007278956.1| - 8.2e-51 171.4 0.5 2.4e-50 169.9 0.1 2.0 2 0 0 2 2 1 1 Protein of unknown function (DUF460) FlaC_arch PF05377.11 gi|433589460|ref|YP_007278956.1| - 7.9e-05 23.0 6.6 0.071 13.5 0.8 2.8 2 0 0 2 2 2 2 Flagella accessory protein C (FlaC) acVLRF1 PF18859.1 gi|433589460|ref|YP_007278956.1| - 0.00045 20.5 3.4 0.00045 20.5 3.4 4.6 4 1 1 5 5 4 1 Actinobacteria/chloroflexi VLRF1 release factor TRAF_BIRC3_bd PF16673.5 gi|433589460|ref|YP_007278956.1| - 0.0058 16.4 3.8 0.0058 16.4 3.8 2.8 2 0 0 2 2 2 1 TNF receptor-associated factor BIRC3 binding domain Exonuc_VII_L PF02601.15 gi|433589460|ref|YP_007278956.1| - 0.0061 16.2 3.5 0.011 15.3 3.5 1.5 1 0 0 1 1 1 1 Exonuclease VII, large subunit PspA_IM30 PF04012.12 gi|433589460|ref|YP_007278956.1| - 0.007 16.0 13.5 0.93 9.0 12.0 3.1 2 1 0 2 2 2 1 PspA/IM30 family DUF1664 PF07889.12 gi|433589460|ref|YP_007278956.1| - 0.019 15.0 8.4 0.86 9.6 2.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) HMMR_N PF15905.5 gi|433589460|ref|YP_007278956.1| - 0.031 13.8 16.1 0.054 13.0 16.1 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DUF4407 PF14362.6 gi|433589460|ref|YP_007278956.1| - 0.044 13.1 10.0 0.12 11.7 10.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF724 PF05266.14 gi|433589460|ref|YP_007278956.1| - 0.059 13.2 10.4 0.14 12.0 10.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Laminin_II PF06009.12 gi|433589460|ref|YP_007278956.1| - 0.07 13.2 6.2 0.2 11.6 6.2 1.8 1 0 0 1 1 1 0 Laminin Domain II NPV_P10 PF05531.12 gi|433589460|ref|YP_007278956.1| - 0.074 13.5 0.8 2 8.9 0.1 2.9 3 0 0 3 3 2 0 Nucleopolyhedrovirus P10 protein DUF4094 PF13334.6 gi|433589460|ref|YP_007278956.1| - 0.075 13.5 7.3 0.037 14.4 2.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) Spc7 PF08317.11 gi|433589460|ref|YP_007278956.1| - 0.08 11.8 15.6 0.17 10.7 15.6 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein FAM76 PF16046.5 gi|433589460|ref|YP_007278956.1| - 0.08 12.3 5.5 0.14 11.5 5.5 1.3 1 0 0 1 1 1 0 FAM76 protein HOOK PF05622.12 gi|433589460|ref|YP_007278956.1| - 0.082 11.1 18.6 0.068 11.3 9.4 2.0 1 1 1 2 2 2 0 HOOK protein BtrH_N PF14399.6 gi|433589460|ref|YP_007278956.1| - 0.083 13.1 0.0 30 4.9 0.0 3.1 2 1 1 3 3 3 0 Butirosin biosynthesis protein H, N-terminal Herpes_UL6 PF01763.16 gi|433589460|ref|YP_007278956.1| - 0.085 11.4 3.7 0.13 10.7 3.7 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like DUF2968 PF11180.8 gi|433589460|ref|YP_007278956.1| - 0.11 12.1 17.4 0.048 13.3 12.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) V_ATPase_I PF01496.19 gi|433589460|ref|YP_007278956.1| - 0.12 10.3 6.8 0.18 9.7 6.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Prefoldin PF02996.17 gi|433589460|ref|YP_007278956.1| - 0.14 12.0 4.6 3.4 7.6 0.7 2.6 2 0 0 2 2 2 0 Prefoldin subunit Atg14 PF10186.9 gi|433589460|ref|YP_007278956.1| - 0.19 10.8 12.9 0.32 10.0 12.9 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Lectin_N PF03954.14 gi|433589460|ref|YP_007278956.1| - 0.26 11.0 3.1 5 6.9 0.5 2.6 1 1 0 2 2 2 0 Hepatic lectin, N-terminal domain CENP-F_leu_zip PF10473.9 gi|433589460|ref|YP_007278956.1| - 0.36 10.8 22.1 1.1 9.3 4.8 3.0 2 1 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF641 PF04859.12 gi|433589460|ref|YP_007278956.1| - 0.44 10.9 13.0 3.1 8.1 4.6 3.2 2 1 1 3 3 2 0 Plant protein of unknown function (DUF641) DUF5082 PF16888.5 gi|433589460|ref|YP_007278956.1| - 0.46 10.8 9.0 2 8.7 0.2 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF5082) FapA PF03961.13 gi|433589460|ref|YP_007278956.1| - 0.71 8.4 5.9 1.2 7.6 5.9 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A CENP-Q PF13094.6 gi|433589460|ref|YP_007278956.1| - 0.85 9.8 24.4 2.5 8.3 11.9 2.7 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit FlaG PF03646.15 gi|433589460|ref|YP_007278956.1| - 0.87 9.8 8.5 1.2 9.3 2.0 2.6 2 0 0 2 2 2 0 FlaG protein BRE1 PF08647.11 gi|433589460|ref|YP_007278956.1| - 0.9 9.7 11.7 7.1 6.8 0.9 2.6 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase MbeD_MobD PF04899.12 gi|433589460|ref|YP_007278956.1| - 1.1 9.4 4.3 1.4 9.1 0.3 2.7 1 1 1 2 2 2 0 MbeD/MobD like UPF0242 PF06785.11 gi|433589460|ref|YP_007278956.1| - 1.1 9.3 16.8 2.1 8.4 16.8 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus CLZ PF16526.5 gi|433589460|ref|YP_007278956.1| - 1.4 9.3 15.2 1.2 9.5 3.8 3.2 1 1 2 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF16 PF01519.16 gi|433589460|ref|YP_007278956.1| - 2.1 8.9 9.9 3.2 8.3 3.0 2.8 1 1 1 2 2 2 0 Protein of unknown function DUF16 BLOC1_2 PF10046.9 gi|433589460|ref|YP_007278956.1| - 2.3 8.6 9.9 0.98 9.8 1.0 3.2 4 0 0 4 4 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GP20 PF06810.11 gi|433589460|ref|YP_007278956.1| - 2.9 7.7 11.1 1.2 8.9 0.5 2.9 2 1 1 3 3 2 0 Phage minor structural protein GP20 Spc24 PF08286.11 gi|433589460|ref|YP_007278956.1| - 3.2 8.0 13.3 8.6 6.7 3.7 2.7 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Cauli_AT PF03233.13 gi|433589460|ref|YP_007278956.1| - 3.5 7.5 6.3 0.29 11.1 0.8 1.9 2 0 0 2 2 2 0 Aphid transmission protein Tropomyosin_1 PF12718.7 gi|433589460|ref|YP_007278956.1| - 3.5 7.8 31.2 0.45 10.7 21.3 3.8 4 1 0 4 4 3 0 Tropomyosin like bZIP_1 PF00170.21 gi|433589460|ref|YP_007278956.1| - 4.2 7.5 25.8 0.18 11.9 7.7 2.9 3 0 0 3 3 2 0 bZIP transcription factor PI3K_P85_iSH2 PF16454.5 gi|433589460|ref|YP_007278956.1| - 5.5 6.6 16.6 2 8.0 13.6 1.8 2 0 0 2 2 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain HemX PF04375.14 gi|433589460|ref|YP_007278956.1| - 6.9 5.9 10.6 1.8 7.8 1.9 2.2 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase ADIP PF11559.8 gi|433589460|ref|YP_007278956.1| - 7.1 6.7 17.3 27 4.8 8.6 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Wtap PF17098.5 gi|433589460|ref|YP_007278956.1| - 7.9 6.4 15.3 0.7 9.8 4.6 2.6 1 1 1 2 2 2 0 WTAP/Mum2p family SlyX PF04102.12 gi|433589460|ref|YP_007278956.1| - 8.2 7.1 15.8 2.6 8.8 3.1 3.2 1 1 1 2 2 2 0 SlyX TMF_TATA_bd PF12325.8 gi|433589460|ref|YP_007278956.1| - 9.5 6.5 25.7 3.4 7.9 6.4 2.9 2 1 1 3 3 2 0 TATA element modulatory factor 1 TATA binding CorA PF01544.18 gi|433589460|ref|YP_007278956.1| - 9.5 5.4 8.5 24 4.1 8.5 1.6 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Lactamase_B_2 PF12706.7 gi|433589461|ref|YP_007278957.1| - 6.5e-19 68.2 1.5 1.2e-09 38.0 0.6 2.2 1 1 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|433589461|ref|YP_007278957.1| - 5.6e-13 49.4 4.5 3.4e-11 43.5 0.9 2.3 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|433589461|ref|YP_007278957.1| - 0.01 15.5 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease CARDB PF07705.11 gi|433589462|ref|YP_007278958.1| - 9.6e-07 29.0 3.3 3.4e-06 27.3 0.1 3.0 3 0 0 3 3 3 1 CARDB Fn3-like PF14310.6 gi|433589462|ref|YP_007278958.1| - 0.038 14.1 0.8 19 5.4 0.0 3.3 4 0 0 4 4 4 0 Fibronectin type III-like domain DUF1299 PF06975.11 gi|433589462|ref|YP_007278958.1| - 0.34 11.0 2.2 23 5.2 0.0 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1299) DUF3992 PF13157.6 gi|433589462|ref|YP_007278958.1| - 2 9.2 7.2 1.6 9.5 0.2 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF3992) AAA PF00004.29 gi|433589463|ref|YP_007278959.1| - 1.4e-12 48.2 0.0 5.9e-12 46.1 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rep_fac_C PF08542.11 gi|433589463|ref|YP_007278959.1| - 1.6e-12 47.7 0.4 3.6e-12 46.5 0.1 1.7 2 0 0 2 2 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|433589463|ref|YP_007278959.1| - 5.7e-11 42.5 0.0 1.2e-10 41.4 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.6 gi|433589463|ref|YP_007278959.1| - 4e-08 33.6 0.0 1.2e-07 32.1 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433589463|ref|YP_007278959.1| - 2.1e-07 31.5 0.1 1.7e-05 25.3 0.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|433589463|ref|YP_007278959.1| - 1.6e-06 28.0 0.0 7.1e-05 22.6 0.0 2.5 3 0 0 3 3 3 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|433589463|ref|YP_007278959.1| - 4.8e-05 22.8 0.0 7.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|433589463|ref|YP_007278959.1| - 9.6e-05 22.9 0.0 0.00039 21.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|433589463|ref|YP_007278959.1| - 0.00015 22.1 0.0 0.0025 18.2 0.0 2.3 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|433589463|ref|YP_007278959.1| - 0.00028 20.2 0.0 0.00069 19.0 0.0 1.6 2 0 0 2 2 1 1 Zeta toxin AAA_11 PF13086.6 gi|433589463|ref|YP_007278959.1| - 0.00059 19.7 0.0 0.0012 18.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|433589463|ref|YP_007278959.1| - 0.00076 19.5 0.0 0.002 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|433589463|ref|YP_007278959.1| - 0.00087 19.3 0.0 0.0046 17.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|433589463|ref|YP_007278959.1| - 0.0015 17.7 0.0 0.0047 16.0 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein NACHT PF05729.12 gi|433589463|ref|YP_007278959.1| - 0.002 18.1 0.0 0.0065 16.4 0.0 1.9 1 1 0 1 1 1 1 NACHT domain Sigma54_activ_2 PF14532.6 gi|433589463|ref|YP_007278959.1| - 0.0032 17.6 0.0 0.011 15.9 0.0 1.7 2 0 0 2 2 2 1 Sigma-54 interaction domain TIP49 PF06068.13 gi|433589463|ref|YP_007278959.1| - 0.0036 16.5 0.0 0.0056 15.9 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_30 PF13604.6 gi|433589463|ref|YP_007278959.1| - 0.0097 15.6 0.1 0.042 13.6 0.0 2.1 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|433589463|ref|YP_007278959.1| - 0.011 15.5 0.0 0.028 14.1 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|433589463|ref|YP_007278959.1| - 0.014 15.6 0.0 0.026 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|433589463|ref|YP_007278959.1| - 0.014 15.1 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain CPT PF07931.12 gi|433589463|ref|YP_007278959.1| - 0.02 14.7 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein RuvB_N PF05496.12 gi|433589463|ref|YP_007278959.1| - 0.043 13.6 0.0 0.2 11.4 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|433589463|ref|YP_007278959.1| - 0.068 13.1 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Metal_resist PF13801.6 gi|433589463|ref|YP_007278959.1| - 0.069 13.3 0.7 0.069 13.3 0.7 3.4 4 0 0 4 4 4 0 Heavy-metal resistance AAA_7 PF12775.7 gi|433589463|ref|YP_007278959.1| - 0.078 12.5 0.0 0.24 10.9 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region Tnp_P_element_C PF12596.8 gi|433589463|ref|YP_007278959.1| - 0.095 13.3 0.1 0.73 10.4 0.0 2.4 3 0 0 3 3 2 0 87kDa Transposase RNA_helicase PF00910.22 gi|433589463|ref|YP_007278959.1| - 0.14 12.6 0.0 0.32 11.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Rho_N PF07498.12 gi|433589463|ref|YP_007278959.1| - 0.15 12.0 0.0 0.46 10.4 0.0 1.8 1 0 0 1 1 1 0 Rho termination factor, N-terminal domain UPF0020 PF01170.18 gi|433589464|ref|YP_007278960.1| - 1.3e-21 77.3 0.1 8.1e-21 74.6 0.1 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|433589464|ref|YP_007278960.1| - 3.3e-06 27.7 0.0 1.1e-05 26.0 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433589464|ref|YP_007278960.1| - 0.00011 22.7 0.0 0.00041 20.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.17 gi|433589464|ref|YP_007278960.1| - 0.00016 21.8 0.0 0.00033 20.8 0.0 1.6 1 1 0 1 1 1 1 THUMP domain AviRa PF11599.8 gi|433589464|ref|YP_007278960.1| - 0.00026 20.5 0.0 0.11 12.0 0.0 2.2 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Methyltransf_31 PF13847.6 gi|433589464|ref|YP_007278960.1| - 0.021 14.6 0.0 0.062 13.1 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433589464|ref|YP_007278960.1| - 0.031 14.1 0.0 0.079 12.8 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|433589464|ref|YP_007278960.1| - 0.089 12.4 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|433589464|ref|YP_007278960.1| - 0.19 11.0 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase TBP PF00352.21 gi|433589465|ref|YP_007278961.1| - 4.8e-58 193.1 0.0 5.1e-28 96.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) T4bSS_IcmS PF12608.8 gi|433589465|ref|YP_007278961.1| - 1.2e-05 25.5 0.0 0.01 16.1 0.0 2.2 2 0 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment DUF3378 PF11858.8 gi|433589465|ref|YP_007278961.1| - 0.00025 21.1 0.0 0.69 10.1 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Ribosomal_S30AE PF02482.19 gi|433589465|ref|YP_007278961.1| - 0.11 13.2 0.0 12 6.8 0.0 2.2 2 0 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein HisG PF01634.18 gi|433589467|ref|YP_007278963.1| - 3.8e-49 166.7 0.1 5.3e-49 166.2 0.1 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|433589467|ref|YP_007278963.1| - 6.5e-26 90.3 0.1 1.4e-25 89.2 0.1 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|433589467|ref|YP_007278963.1| - 2.6e-05 24.3 0.1 0.00017 21.6 0.1 2.1 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|433589467|ref|YP_007278963.1| - 0.018 14.6 0.1 0.056 13.0 0.0 2.0 2 0 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.20 gi|433589467|ref|YP_007278963.1| - 0.019 14.3 0.1 0.032 13.6 0.1 1.3 1 0 0 1 1 1 0 LysR substrate binding domain SHOCT PF09851.9 gi|433589468|ref|YP_007278964.1| - 1.7e-06 27.6 5.4 2.3e-06 27.1 5.4 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|433589468|ref|YP_007278964.1| - 0.00023 21.2 5.6 0.00043 20.3 5.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Apq12 PF12716.7 gi|433589468|ref|YP_007278964.1| - 0.071 13.1 0.4 0.071 13.1 0.4 2.0 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis CdvA PF18822.1 gi|433589468|ref|YP_007278964.1| - 0.1 12.4 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 CdvA-like coiled-coil domain DMAP_binding PF06464.11 gi|433589468|ref|YP_007278964.1| - 0.16 12.8 0.4 0.2 12.5 0.4 1.1 1 0 0 1 1 1 0 DMAP1-binding Domain DUF3007 PF11460.8 gi|433589468|ref|YP_007278964.1| - 7.7 6.8 5.8 0.78 10.0 0.6 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3007) ArsP_1 PF03773.13 gi|433589469|ref|YP_007278965.1| - 1.9e-56 191.4 15.5 2.5e-56 191.0 15.5 1.1 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|433589469|ref|YP_007278965.1| - 2.1e-16 59.7 3.7 2.3e-11 43.6 1.4 2.4 2 0 0 2 2 2 2 YHS domain zf-FCS PF06467.14 gi|433589469|ref|YP_007278965.1| - 3.3e-05 23.7 1.7 0.045 13.7 0.1 2.4 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif zf-HIT PF04438.16 gi|433589469|ref|YP_007278965.1| - 0.0061 16.4 0.5 0.19 11.6 0.1 2.3 2 0 0 2 2 2 1 HIT zinc finger Arc_trans_TRASH PF08394.10 gi|433589469|ref|YP_007278965.1| - 0.039 14.3 0.7 0.18 12.2 0.1 2.1 2 0 0 2 2 2 0 Archaeal TRASH domain VATC PF18716.1 gi|433589469|ref|YP_007278965.1| - 0.46 10.4 4.3 5.4 6.9 0.3 2.4 2 0 0 2 2 2 0 Vms1-associating treble clef domain HMA PF00403.26 gi|433589470|ref|YP_007278966.1| - 5.7e-20 71.5 0.6 6.3e-20 71.4 0.6 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain HTH_24 PF13412.6 gi|433589471|ref|YP_007278967.1| - 5.5e-15 54.7 0.0 8.6e-15 54.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433589471|ref|YP_007278967.1| - 6.1e-15 54.8 0.4 6.1e-15 54.8 0.4 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|433589471|ref|YP_007278967.1| - 9.1e-08 32.1 0.0 1.9e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433589471|ref|YP_007278967.1| - 1.6e-07 31.1 0.1 2.6e-07 30.4 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|433589471|ref|YP_007278967.1| - 1.8e-07 31.0 0.0 2.8e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|433589471|ref|YP_007278967.1| - 1.6e-05 24.6 0.0 2.4e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family LIM PF00412.22 gi|433589471|ref|YP_007278967.1| - 0.00055 20.1 0.9 0.00095 19.4 0.9 1.4 1 0 0 1 1 1 1 LIM domain HTH_IclR PF09339.10 gi|433589471|ref|YP_007278967.1| - 0.0019 17.9 0.0 0.0031 17.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain YHS PF04945.13 gi|433589471|ref|YP_007278967.1| - 0.0023 18.0 1.8 0.0039 17.3 1.8 1.3 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|433589471|ref|YP_007278967.1| - 0.0055 17.0 2.2 0.0083 16.4 2.2 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain TrmB PF01978.19 gi|433589471|ref|YP_007278967.1| - 0.012 15.5 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ATPase-cat_bd PF12156.8 gi|433589471|ref|YP_007278967.1| - 0.028 15.1 2.4 0.053 14.3 2.4 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase HTH_1 PF00126.27 gi|433589471|ref|YP_007278967.1| - 0.031 14.2 0.0 0.084 12.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_ISL3 PF13542.6 gi|433589471|ref|YP_007278967.1| - 0.034 13.6 0.0 0.063 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.6 gi|433589471|ref|YP_007278967.1| - 0.052 14.0 0.0 0.08 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|433589471|ref|YP_007278967.1| - 0.083 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 HTH domain Ta0938 PF11494.8 gi|433589471|ref|YP_007278967.1| - 0.099 12.9 0.9 0.24 11.7 1.0 1.6 2 0 0 2 2 2 0 Ta0938 Fe_dep_repress PF01325.19 gi|433589471|ref|YP_007278967.1| - 0.1 12.8 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HxlR PF01638.17 gi|433589471|ref|YP_007278967.1| - 0.19 11.6 0.0 0.32 10.9 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Zn-ribbon_8 PF09723.10 gi|433589471|ref|YP_007278967.1| - 1.1 9.4 6.4 8.3 6.6 3.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain E1-E2_ATPase PF00122.20 gi|433589472|ref|YP_007278968.1| - 6.2e-48 162.7 1.4 1.6e-47 161.3 1.4 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433589472|ref|YP_007278968.1| - 9.5e-46 156.7 8.6 2e-45 155.7 8.6 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|433589472|ref|YP_007278968.1| - 1.2e-29 102.5 0.1 4.8e-14 52.6 0.0 2.7 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|433589472|ref|YP_007278968.1| - 8.4e-08 32.3 1.5 0.0014 18.4 0.5 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433589472|ref|YP_007278968.1| - 0.003 18.0 1.0 0.0085 16.5 0.3 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|433589472|ref|YP_007278968.1| - 0.0055 16.8 0.5 0.046 13.8 0.0 2.8 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase DUF4382 PF14321.6 gi|433589473|ref|YP_007278969.1| - 3.1e-32 111.7 0.8 3.1e-32 111.7 0.8 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4382) SpoIIM PF01944.17 gi|433589474|ref|YP_007278970.1| - 4.5e-29 101.5 16.7 5.8e-29 101.1 16.7 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M Amidohydro_1 PF01979.20 gi|433589475|ref|YP_007278971.1| - 8e-68 229.3 2.4 9.3e-68 229.1 2.4 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|433589475|ref|YP_007278971.1| - 8.1e-23 81.6 15.3 7.1e-18 65.3 9.9 2.3 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|433589475|ref|YP_007278971.1| - 0.00012 21.5 0.0 0.00025 20.5 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase Bile_Hydr_Trans PF04775.14 gi|433589476|ref|YP_007278972.1| - 0.068 13.2 1.3 0.33 11.0 0.1 2.4 2 1 0 2 2 2 0 Acyl-CoA thioester hydrolase/BAAT N-terminal region CarboxypepD_reg PF13620.6 gi|433589476|ref|YP_007278972.1| - 0.087 13.1 14.5 0.15 12.4 13.7 1.8 1 1 0 1 1 1 0 Carboxypeptidase regulatory-like domain MG4 PF17789.1 gi|433589476|ref|YP_007278972.1| - 5.1 7.3 7.1 3.6 7.8 0.7 2.5 1 1 1 2 2 2 0 Macroglobulin domain MG4 AdoHcyase PF05221.17 gi|433589477|ref|YP_007278973.1| - 1.8e-51 175.1 0.0 3.9e-26 91.9 0.4 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|433589477|ref|YP_007278973.1| - 1.8e-47 161.4 1.1 3.8e-47 160.4 0.3 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|433589477|ref|YP_007278973.1| - 1e-08 34.8 0.1 2e-08 33.8 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|433589477|ref|YP_007278973.1| - 4.7e-06 26.3 0.7 1.1e-05 25.0 0.2 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|433589477|ref|YP_007278973.1| - 0.024 14.9 0.1 0.057 13.7 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 gi|433589477|ref|YP_007278973.1| - 0.084 12.8 1.0 0.16 11.9 0.2 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Urocanase PF01175.18 gi|433589477|ref|YP_007278973.1| - 0.11 12.1 0.5 0.26 10.9 0.5 1.5 1 0 0 1 1 1 0 Urocanase Rossmann-like domain PAS_9 PF13426.7 gi|433589478|ref|YP_007278974.1| - 2.5e-06 27.7 0.0 6.2e-06 26.4 0.0 1.6 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|433589478|ref|YP_007278974.1| - 0.00013 22.2 0.3 0.00045 20.5 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.12 gi|433589478|ref|YP_007278974.1| - 0.012 15.8 0.0 0.026 14.8 0.0 1.6 1 0 0 1 1 1 0 PAS fold HalOD1 PF18545.1 gi|433589479|ref|YP_007278975.1| - 1e-24 86.6 0.6 1.2e-24 86.4 0.6 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 MMPL PF03176.15 gi|433589479|ref|YP_007278975.1| - 0.0034 16.3 0.1 0.0038 16.2 0.1 1.0 1 0 0 1 1 1 1 MMPL family MlrC_C PF07171.12 gi|433589479|ref|YP_007278975.1| - 0.021 15.0 0.1 0.022 14.9 0.1 1.2 1 0 0 1 1 1 0 MlrC C-terminus PAS_3 PF08447.12 gi|433589480|ref|YP_007278976.1| - 3.1e-57 190.8 0.0 7.3e-18 64.7 0.1 5.5 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.7 gi|433589480|ref|YP_007278976.1| - 3.6e-52 175.0 3.5 1.6e-13 50.8 0.0 5.8 6 0 0 6 6 5 5 PAS domain PAS_4 PF08448.10 gi|433589480|ref|YP_007278976.1| - 1.5e-50 170.1 22.0 4.5e-14 52.6 0.2 5.8 5 0 0 5 5 5 5 PAS fold BAT PF15915.5 gi|433589480|ref|YP_007278976.1| - 5e-48 162.9 8.2 5e-48 162.9 8.2 4.1 3 0 0 3 3 3 1 GAF and HTH_10 associated domain PAS PF00989.25 gi|433589480|ref|YP_007278976.1| - 1.9e-46 156.7 3.9 2e-16 60.0 0.0 5.6 5 0 0 5 5 5 4 PAS fold GAF_2 PF13185.6 gi|433589480|ref|YP_007278976.1| - 1.1e-20 74.3 16.4 7.9e-12 45.7 0.4 5.7 7 0 0 7 7 6 3 GAF domain HTH_10 PF04967.12 gi|433589480|ref|YP_007278976.1| - 2.4e-16 59.3 0.0 5.4e-16 58.1 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.6 gi|433589480|ref|YP_007278976.1| - 1.9e-14 54.1 0.4 0.00054 20.3 0.0 3.9 4 0 0 4 4 3 3 GAF domain PAS_8 PF13188.7 gi|433589480|ref|YP_007278976.1| - 2.4e-13 49.8 5.2 0.00018 21.5 0.0 4.2 3 0 0 3 3 3 3 PAS domain GAF PF01590.26 gi|433589480|ref|YP_007278976.1| - 4e-09 37.2 0.3 0.018 15.7 0.0 4.5 4 0 0 4 4 4 2 GAF domain PAS_11 PF14598.6 gi|433589480|ref|YP_007278976.1| - 1.3e-06 28.5 0.0 0.3 11.2 0.0 4.4 4 0 0 4 4 4 2 PAS domain PAS_10 PF13596.6 gi|433589480|ref|YP_007278976.1| - 8.4e-06 26.3 0.2 0.77 10.4 0.0 3.8 3 0 0 3 3 3 2 PAS domain Sigma70_r4 PF04545.16 gi|433589480|ref|YP_007278976.1| - 0.00027 20.4 0.0 0.001 18.5 0.0 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 gi|433589480|ref|YP_007278976.1| - 0.011 15.7 2.5 0.015 15.2 0.2 2.5 2 0 0 2 2 2 0 ECF sigma factor HTH_5 PF01022.20 gi|433589480|ref|YP_007278976.1| - 0.055 13.3 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_22 PF13309.6 gi|433589480|ref|YP_007278976.1| - 0.15 12.2 0.0 4.7 7.4 0.0 2.9 2 0 0 2 2 2 0 HTH domain CPBP PF02517.16 gi|433589481|ref|YP_007278977.1| - 9.3e-16 58.0 2.5 9.3e-16 58.0 2.5 2.4 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF2070 PF09843.9 gi|433589481|ref|YP_007278977.1| - 9.8 4.3 15.3 14 3.8 15.3 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) Hjc PF01870.18 gi|433589482|ref|YP_007278978.1| - 4.9e-30 103.4 0.0 6.3e-30 103.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NHL PF01436.21 gi|433589482|ref|YP_007278978.1| - 0.16 12.0 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 NHL repeat SWIM PF04434.17 gi|433589484|ref|YP_007278980.1| - 0.0011 18.5 0.3 0.0027 17.3 0.1 1.7 2 0 0 2 2 2 1 SWIM zinc finger SafA PF17073.5 gi|433589485|ref|YP_007278981.1| - 0.015 15.3 1.2 0.02 14.8 1.1 1.4 1 1 0 1 1 1 0 Two-component-system connector protein ABC2_membrane_4 PF12730.7 gi|433589485|ref|YP_007278981.1| - 0.041 13.8 0.1 0.049 13.6 0.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein EphA2_TM PF14575.6 gi|433589485|ref|YP_007278981.1| - 0.13 13.1 0.1 6.4 7.7 0.0 2.1 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain LMBR1 PF04791.16 gi|433589485|ref|YP_007278981.1| - 0.16 10.8 0.1 0.17 10.8 0.1 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein ETRAMP PF09716.10 gi|433589485|ref|YP_007278981.1| - 1.2 9.2 4.8 13 6.0 0.1 2.1 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DNA_primase_lrg PF04104.14 gi|433589486|ref|YP_007278982.1| - 3.7e-35 121.6 0.0 5.9e-35 121.0 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Abhydrolase_1 PF00561.20 gi|433589487|ref|YP_007278983.1| - 1.2e-24 87.4 0.0 8.6e-23 81.3 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433589487|ref|YP_007278983.1| - 1.8e-20 74.5 5.3 2.3e-20 74.2 5.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433589487|ref|YP_007278983.1| - 1e-15 57.7 0.0 2.7e-15 56.3 0.0 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|433589487|ref|YP_007278983.1| - 6.6e-05 22.7 0.0 0.26 11.1 0.0 2.5 2 1 0 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 gi|433589487|ref|YP_007278983.1| - 7.7e-05 22.8 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein LIP PF03583.14 gi|433589487|ref|YP_007278983.1| - 0.00016 21.1 0.1 0.15 11.4 0.1 2.3 2 0 0 2 2 2 2 Secretory lipase UPF0227 PF05728.12 gi|433589487|ref|YP_007278983.1| - 0.0066 16.4 0.4 3.7 7.4 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0227) Peptidase_S9 PF00326.21 gi|433589487|ref|YP_007278983.1| - 0.012 15.1 0.1 0.095 12.2 0.0 2.3 3 0 0 3 3 3 0 Prolyl oligopeptidase family FSH1 PF03959.13 gi|433589487|ref|YP_007278983.1| - 0.022 14.4 0.0 0.076 12.7 0.0 1.7 2 0 0 2 2 2 0 Serine hydrolase (FSH1) DLH PF01738.18 gi|433589487|ref|YP_007278983.1| - 0.034 13.7 0.0 0.24 10.9 0.0 2.0 2 0 0 2 2 2 0 Dienelactone hydrolase family DUF915 PF06028.11 gi|433589487|ref|YP_007278983.1| - 0.035 13.5 0.0 0.075 12.3 0.0 1.5 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) Abhydrolase_2 PF02230.16 gi|433589487|ref|YP_007278983.1| - 0.058 13.2 0.0 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Patatin PF01734.22 gi|433589487|ref|YP_007278983.1| - 0.11 12.7 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Patatin-like phospholipase Ndr PF03096.14 gi|433589487|ref|YP_007278983.1| - 0.23 10.1 0.0 0.36 9.5 0.0 1.2 1 0 0 1 1 1 0 Ndr family HalOD1 PF18545.1 gi|433589488|ref|YP_007278984.1| - 7.9e-27 93.3 0.4 7.9e-27 93.3 0.4 1.4 2 0 0 2 2 2 1 Halobacterial output domain 1 PCNA_N PF00705.18 gi|433589489|ref|YP_007278985.1| - 1.4e-09 37.8 0.2 2.3e-09 37.1 0.2 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|433589489|ref|YP_007278985.1| - 6.9e-06 26.2 0.0 2e-05 24.7 0.0 1.9 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|433589489|ref|YP_007278985.1| - 0.044 13.2 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 Rad9 Rad1 PF02144.16 gi|433589489|ref|YP_007278985.1| - 0.12 11.5 0.0 0.51 9.4 0.0 1.9 1 1 1 2 2 2 0 Repair protein Rad1/Rec1/Rad17 EMC3_TMCO1 PF01956.16 gi|433589490|ref|YP_007278986.1| - 1.4e-42 145.4 0.0 1.7e-42 145.0 0.0 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like FtsJ PF01728.19 gi|433589491|ref|YP_007278987.1| - 2.8e-51 174.1 0.0 3.4e-51 173.9 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|433589491|ref|YP_007278987.1| - 6.6e-13 48.4 2.5 1.2e-12 47.6 0.6 2.2 2 0 0 2 2 2 1 TRAM domain Methyltransf_31 PF13847.6 gi|433589491|ref|YP_007278987.1| - 6.9e-07 29.2 0.0 5.7e-06 26.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433589491|ref|YP_007278987.1| - 0.00021 21.9 0.2 0.00057 20.6 0.2 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433589491|ref|YP_007278987.1| - 0.0014 18.5 0.0 0.004 17.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MaoC_dehydratas PF01575.19 gi|433589491|ref|YP_007278987.1| - 0.099 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 MaoC like domain PCMT PF01135.19 gi|433589491|ref|YP_007278987.1| - 0.15 11.8 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RHH_1 PF01402.21 gi|433589492|ref|YP_007278988.1| - 0.0021 17.9 0.9 0.0054 16.6 0.1 1.9 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|433589492|ref|YP_007278988.1| - 0.0063 16.7 0.1 0.0063 16.7 0.1 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family TatC PF00902.18 gi|433589493|ref|YP_007278989.1| - 7.8e-70 234.9 38.7 1.5e-37 129.4 14.5 2.9 3 0 0 3 3 3 2 Sec-independent protein translocase protein (TatC) TMEM18 PF14770.6 gi|433589493|ref|YP_007278989.1| - 0.21 11.6 5.0 1.2 9.2 5.0 2.4 1 0 0 1 1 1 0 Transmembrane protein 18 TatC PF00902.18 gi|433589494|ref|YP_007278990.1| - 3.5e-39 134.8 15.3 4.4e-39 134.5 15.3 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Molybdopterin PF00384.22 gi|433589495|ref|YP_007278991.1| - 3.2e-55 187.8 0.0 4.5e-55 187.4 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|433589495|ref|YP_007278991.1| - 3.9e-14 52.6 0.7 2.4e-11 43.7 0.0 2.7 3 0 0 3 3 3 2 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|433589495|ref|YP_007278991.1| - 5.7e-07 29.4 1.9 1.2e-06 28.4 1.9 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain NIR_SIR PF01077.22 gi|433589496|ref|YP_007278992.1| - 5.3e-43 146.3 0.0 9.3e-29 100.0 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|433589496|ref|YP_007278992.1| - 7.4e-38 128.2 0.1 4.5e-18 64.9 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|433589496|ref|YP_007278992.1| - 0.23 11.5 0.5 3 8.0 0.0 2.3 2 0 0 2 2 2 0 DGC domain Asn_synthase PF00733.21 gi|433589499|ref|YP_007278995.1| - 1.7e-10 41.1 0.4 2.5e-10 40.6 0.4 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|433589499|ref|YP_007278995.1| - 5.7e-09 35.2 0.1 5.4e-06 25.4 0.1 2.3 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.17 gi|433589499|ref|YP_007278995.1| - 4.2e-08 32.6 0.0 6.7e-08 31.9 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|433589499|ref|YP_007278995.1| - 9.8e-06 25.2 0.0 0.00016 21.3 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|433589499|ref|YP_007278995.1| - 0.031 14.1 0.1 0.13 12.0 0.2 2.1 2 1 0 2 2 2 0 PP-loop family Arginosuc_synth PF00764.19 gi|433589499|ref|YP_007278995.1| - 0.031 13.5 0.1 0.046 13.0 0.1 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase QueH PF02677.14 gi|433589499|ref|YP_007278995.1| - 0.091 12.9 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH PG_binding_2 PF08823.11 gi|433589499|ref|YP_007278995.1| - 0.15 12.4 0.1 1.4 9.3 0.0 2.3 2 0 0 2 2 2 0 Putative peptidoglycan binding domain CbtA PF09490.10 gi|433589500|ref|YP_007278996.1| - 0.12 12.1 0.9 1.4 8.6 0.8 2.1 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtA) DUF368 PF04018.13 gi|433589501|ref|YP_007278997.1| - 4.3e-61 206.6 15.9 5.2e-61 206.4 15.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) MutS_V PF00488.21 gi|433589502|ref|YP_007278998.1| - 5e-09 36.4 0.9 7.1e-09 36.0 0.1 1.6 2 0 0 2 2 2 1 MutS domain V HHH_5 PF14520.6 gi|433589502|ref|YP_007278998.1| - 4.7e-08 33.5 4.2 1.1e-07 32.4 0.7 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|433589502|ref|YP_007278998.1| - 3.8e-05 23.3 1.1 0.0012 18.6 0.1 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_21 PF13304.6 gi|433589502|ref|YP_007278998.1| - 0.014 15.2 0.0 0.26 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system Transposase_20 PF02371.16 gi|433589502|ref|YP_007278998.1| - 0.029 14.7 0.1 0.076 13.3 0.1 1.7 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.8 gi|433589502|ref|YP_007278998.1| - 0.036 14.4 0.0 0.11 12.9 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif AAA_16 PF13191.6 gi|433589504|ref|YP_007279000.1| - 1.4e-13 51.6 0.1 3.1e-11 43.9 0.1 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|433589504|ref|YP_007279000.1| - 2.9e-10 40.5 0.0 5.6e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|433589504|ref|YP_007279000.1| - 1.2e-05 25.7 0.0 3.1e-05 24.4 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|433589504|ref|YP_007279000.1| - 5.3e-05 22.8 0.0 0.0015 18.1 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|433589504|ref|YP_007279000.1| - 0.0013 18.5 0.0 1.3 8.7 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_35 PF14516.6 gi|433589504|ref|YP_007279000.1| - 0.0013 17.6 0.0 0.037 12.9 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain Cdc6_C PF09079.11 gi|433589504|ref|YP_007279000.1| - 0.0014 18.5 0.0 0.0047 16.9 0.0 1.9 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_11 PF13086.6 gi|433589504|ref|YP_007279000.1| - 0.0015 18.4 0.0 0.0029 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|433589504|ref|YP_007279000.1| - 0.0015 18.3 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase TIP49_C PF17856.1 gi|433589504|ref|YP_007279000.1| - 0.0018 18.4 0.1 0.0048 17.0 0.1 1.7 1 0 0 1 1 1 1 TIP49 AAA-lid domain AAA_30 PF13604.6 gi|433589504|ref|YP_007279000.1| - 0.0022 17.7 0.0 0.0068 16.1 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|433589504|ref|YP_007279000.1| - 0.0025 18.0 0.0 0.0061 16.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|433589504|ref|YP_007279000.1| - 0.0034 16.5 0.0 0.0059 15.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.6 gi|433589504|ref|YP_007279000.1| - 0.0041 17.2 0.1 0.044 13.8 0.1 2.3 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|433589504|ref|YP_007279000.1| - 0.0047 16.9 0.0 0.011 15.7 0.0 1.7 1 1 0 1 1 1 1 NACHT domain AAA_32 PF13654.6 gi|433589504|ref|YP_007279000.1| - 0.0054 15.6 0.1 1.3 7.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|433589504|ref|YP_007279000.1| - 0.0068 16.3 0.1 0.015 15.2 0.1 1.6 1 0 0 1 1 1 1 NTPase ATPase_2 PF01637.18 gi|433589504|ref|YP_007279000.1| - 0.0071 16.3 0.1 0.047 13.6 0.1 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|433589504|ref|YP_007279000.1| - 0.01 16.4 0.0 0.024 15.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|433589504|ref|YP_007279000.1| - 0.014 15.7 0.0 0.029 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|433589504|ref|YP_007279000.1| - 0.015 14.6 0.0 0.026 13.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin DUF2075 PF09848.9 gi|433589504|ref|YP_007279000.1| - 0.016 14.5 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.6 gi|433589504|ref|YP_007279000.1| - 0.016 15.4 0.0 0.05 13.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|433589504|ref|YP_007279000.1| - 0.02 14.6 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF815 PF05673.13 gi|433589504|ref|YP_007279000.1| - 0.027 13.7 0.0 0.13 11.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|433589504|ref|YP_007279000.1| - 0.032 14.6 0.0 0.068 13.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase TniB PF05621.11 gi|433589504|ref|YP_007279000.1| - 0.04 13.3 0.0 0.082 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial TniB protein Rad17 PF03215.15 gi|433589504|ref|YP_007279000.1| - 0.068 13.1 0.0 0.12 12.2 0.0 1.5 1 1 0 1 1 1 0 Rad17 P-loop domain MarR_2 PF12802.7 gi|433589504|ref|YP_007279000.1| - 0.069 13.1 0.0 0.29 11.1 0.0 2.1 1 1 0 1 1 1 0 MarR family AAA_6 PF12774.7 gi|433589504|ref|YP_007279000.1| - 0.083 11.8 0.0 0.18 10.7 0.0 1.5 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_17 PF13207.6 gi|433589504|ref|YP_007279000.1| - 0.085 13.3 0.1 0.63 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|433589504|ref|YP_007279000.1| - 0.086 12.5 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|433589504|ref|YP_007279000.1| - 0.088 12.6 0.0 0.26 11.1 0.0 1.7 2 0 0 2 2 2 0 Bacterial dnaA protein HTH_27 PF13463.6 gi|433589504|ref|YP_007279000.1| - 0.096 13.2 0.0 0.25 11.9 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain RuvB_N PF05496.12 gi|433589504|ref|YP_007279000.1| - 0.16 11.7 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Halo_GVPC PF05465.13 gi|433589505|ref|YP_007279001.1| - 0.0029 17.8 4.6 0.0029 17.8 4.6 2.2 2 1 0 2 2 2 1 Halobacterial gas vesicle protein C (GVPC) repeat DAPDH_C PF16654.5 gi|433589505|ref|YP_007279001.1| - 0.018 14.9 0.1 0.026 14.4 0.1 1.4 1 1 0 1 1 1 0 Diaminopimelic acid dehydrogenase C-terminal domain Cytochrom_B562 PF07361.11 gi|433589505|ref|YP_007279001.1| - 0.046 14.4 2.6 0.25 12.0 0.3 2.0 1 1 1 2 2 2 0 Cytochrome b562 RPN7 PF10602.9 gi|433589505|ref|YP_007279001.1| - 0.049 13.3 1.3 0.055 13.2 0.6 1.5 1 1 0 1 1 1 0 26S proteasome subunit RPN7 DUF3373 PF11853.8 gi|433589505|ref|YP_007279001.1| - 0.1 11.7 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) DUF3010 PF11215.8 gi|433589505|ref|YP_007279001.1| - 0.14 12.4 0.0 0.17 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3010) HBM PF16591.5 gi|433589505|ref|YP_007279001.1| - 0.18 11.2 7.3 0.11 11.8 0.7 2.0 1 1 1 2 2 2 0 Helical bimodular sensor domain DUF883 PF05957.13 gi|433589505|ref|YP_007279001.1| - 0.34 11.5 9.3 0.25 11.9 5.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Hemerythrin PF01814.23 gi|433589505|ref|YP_007279001.1| - 1.1 9.9 7.7 1.7 9.3 0.9 2.0 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain DUF4397 PF14344.6 gi|433589506|ref|YP_007279002.1| - 4.3e-43 147.0 4.7 1.3e-22 80.9 0.2 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4397) AlgF PF11182.8 gi|433589506|ref|YP_007279002.1| - 4.1e-05 23.4 0.5 0.014 15.2 0.1 2.2 1 1 1 2 2 2 2 Alginate O-acetyl transferase AlgF UvrB_inter PF17757.1 gi|433589507|ref|YP_007279003.1| - 7e-32 109.5 0.0 2.2e-31 107.9 0.0 1.9 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|433589507|ref|YP_007279003.1| - 1.1e-18 66.8 0.4 2.2e-18 65.8 0.4 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|433589507|ref|YP_007279003.1| - 2.9e-17 63.0 0.0 7.3e-17 61.7 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.19 gi|433589507|ref|YP_007279003.1| - 1.3e-09 37.5 7.3 1.3e-09 37.5 7.3 2.7 2 0 0 2 2 2 1 UvrB/uvrC motif ResIII PF04851.15 gi|433589507|ref|YP_007279003.1| - 3.8e-08 33.5 0.0 2.5e-07 30.9 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|433589507|ref|YP_007279003.1| - 0.0011 18.7 0.0 0.016 15.0 0.0 2.8 3 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|433589507|ref|YP_007279003.1| - 0.01 15.5 0.1 0.13 11.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain UB2H PF14814.6 gi|433589507|ref|YP_007279003.1| - 0.011 15.7 0.0 0.027 14.5 0.0 1.7 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain AAA_19 PF13245.6 gi|433589507|ref|YP_007279003.1| - 0.011 16.0 0.1 8.2 6.7 0.0 3.0 3 1 0 3 3 3 0 AAA domain DUF87 PF01935.17 gi|433589507|ref|YP_007279003.1| - 0.037 14.1 4.2 0.053 13.6 0.1 3.0 3 1 0 3 3 3 0 Helicase HerA, central domain Cofilin_ADF PF00241.20 gi|433589507|ref|YP_007279003.1| - 0.25 11.2 1.1 0.58 10.0 0.2 2.1 2 0 0 2 2 2 0 Cofilin/tropomyosin-type actin-binding protein FtsK_SpoIIIE PF01580.18 gi|433589507|ref|YP_007279003.1| - 0.79 9.0 3.4 5.6 6.2 0.5 2.9 3 0 0 3 3 3 0 FtsK/SpoIIIE family RPN7 PF10602.9 gi|433589507|ref|YP_007279003.1| - 3.1 7.5 5.5 15 5.3 0.1 3.5 4 0 0 4 4 4 0 26S proteasome subunit RPN7 ArsP_2 PF11449.8 gi|433589510|ref|YP_007279006.1| - 6.7e-132 440.1 16.5 7.7e-132 439.9 16.5 1.0 1 0 0 1 1 1 1 Putative, 10TM heavy-metal exporter CCB1 PF12046.8 gi|433589510|ref|YP_007279006.1| - 0.39 10.0 1.8 1 8.7 1.6 1.8 1 1 0 1 1 1 0 Cofactor assembly of complex C subunit B NrfD PF03916.14 gi|433589511|ref|YP_007279007.1| - 2.1e-19 70.3 22.4 2.1e-19 70.3 22.4 1.9 2 0 0 2 2 2 1 Polysulphide reductase, NrfD Acetyltransf_10 PF13673.7 gi|433589512|ref|YP_007279008.1| - 5.6e-15 55.4 0.0 7.3e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|433589512|ref|YP_007279008.1| - 1.2e-11 44.9 0.0 1.4e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|433589512|ref|YP_007279008.1| - 2.9e-11 43.6 0.0 4.1e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|433589512|ref|YP_007279008.1| - 6e-06 26.5 0.0 7.2e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|433589512|ref|YP_007279008.1| - 2.8e-05 24.8 0.1 3.3e-05 24.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433589512|ref|YP_007279008.1| - 0.00023 21.0 0.0 0.00036 20.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|433589512|ref|YP_007279008.1| - 0.0049 16.9 0.3 0.27 11.3 0.3 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433589513|ref|YP_007279009.1| - 3.8e-14 52.7 0.0 5e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|433589513|ref|YP_007279009.1| - 8.2e-14 51.8 0.0 1e-13 51.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|433589513|ref|YP_007279009.1| - 1.8e-13 50.7 0.0 2.6e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|433589513|ref|YP_007279009.1| - 5.3e-09 36.2 0.1 1e-07 32.1 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433589513|ref|YP_007279009.1| - 1.4e-07 31.3 0.0 2.1e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|433589513|ref|YP_007279009.1| - 4e-07 30.8 0.1 4.6e-07 30.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|433589513|ref|YP_007279009.1| - 4.5e-06 26.9 2.4 6.2e-06 26.4 2.4 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|433589513|ref|YP_007279009.1| - 1.4e-05 25.3 0.0 1.8e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|433589513|ref|YP_007279009.1| - 0.0014 18.7 0.2 0.003 17.6 0.2 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_16 PF05301.11 gi|433589513|ref|YP_007279009.1| - 0.078 12.7 0.0 0.098 12.4 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 SUI1 PF01253.22 gi|433589514|ref|YP_007279010.1| - 1.3e-17 64.1 0.0 2e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|433589514|ref|YP_007279010.1| - 0.00081 19.6 0.0 0.0011 19.2 0.0 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) UvrC_HhH_N PF08459.11 gi|433589515|ref|YP_007279011.1| - 5.8e-42 143.2 0.0 1.1e-41 142.3 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|433589515|ref|YP_007279011.1| - 1.7e-11 44.6 0.0 5e-11 43.0 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|433589515|ref|YP_007279011.1| - 2.8e-10 39.5 0.2 5.7e-08 32.3 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|433589515|ref|YP_007279011.1| - 9.5e-10 38.4 0.0 1.9e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif GIY-YIG PF01541.24 gi|433589515|ref|YP_007279011.1| - 1.3e-08 35.0 0.0 2.4e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain UVR PF02151.19 gi|433589515|ref|YP_007279011.1| - 1.5e-08 34.1 4.6 3.5e-08 32.9 2.0 2.5 2 0 0 2 2 2 1 UvrB/uvrC motif 5_3_exonuc PF01367.20 gi|433589515|ref|YP_007279011.1| - 0.0025 18.4 0.1 0.47 11.1 0.0 2.8 2 1 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.7 gi|433589515|ref|YP_007279011.1| - 0.0079 16.4 0.0 0.048 13.9 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2095 PF09868.9 gi|433589515|ref|YP_007279011.1| - 0.029 14.4 0.3 0.091 12.7 0.3 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2095) FbpA PF05833.11 gi|433589515|ref|YP_007279011.1| - 0.059 12.1 0.0 0.094 11.5 0.0 1.3 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) CsgA PF17334.2 gi|433589515|ref|YP_007279011.1| - 0.065 14.0 0.0 0.15 12.9 0.0 1.6 1 0 0 1 1 1 0 Minor curli fiber component A DUF202 PF02656.15 gi|433589516|ref|YP_007279012.1| - 0.036 14.5 6.6 0.089 13.2 6.6 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF202) TMEM125 PF15109.6 gi|433589516|ref|YP_007279012.1| - 0.067 13.5 1.7 0.12 12.7 0.2 1.9 1 1 1 2 2 2 0 TMEM125 protein family bPH_3 PF14470.6 gi|433589516|ref|YP_007279012.1| - 0.27 11.6 0.0 0.38 11.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial PH domain ABC_tran PF00005.27 gi|433589518|ref|YP_007279014.1| - 4.9e-31 108.1 0.0 9.2e-31 107.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433589518|ref|YP_007279014.1| - 1.7e-11 44.5 0.0 3.2e-06 27.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|433589518|ref|YP_007279014.1| - 1.9e-08 34.9 0.1 9.7e-08 32.6 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|433589518|ref|YP_007279014.1| - 0.00026 20.8 0.0 0.00055 19.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|433589518|ref|YP_007279014.1| - 0.00072 19.1 0.1 0.18 11.2 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|433589518|ref|YP_007279014.1| - 0.0011 18.9 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase BAT PF15915.5 gi|433589518|ref|YP_007279014.1| - 0.0023 17.8 8.0 0.0036 17.2 6.2 2.0 1 1 1 2 2 2 1 GAF and HTH_10 associated domain AAA_23 PF13476.6 gi|433589518|ref|YP_007279014.1| - 0.0031 18.0 0.1 0.0057 17.2 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433589518|ref|YP_007279014.1| - 0.008 16.6 0.1 0.017 15.5 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|433589518|ref|YP_007279014.1| - 0.0099 15.6 0.0 0.84 9.3 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_27 PF13514.6 gi|433589518|ref|YP_007279014.1| - 0.016 14.8 0.0 0.096 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|433589518|ref|YP_007279014.1| - 0.031 14.0 0.0 0.065 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC2_membrane_2 PF12679.7 gi|433589519|ref|YP_007279015.1| - 2.8e-52 177.8 14.8 3.9e-52 177.3 14.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|433589519|ref|YP_007279015.1| - 2.4e-08 34.1 11.2 2.4e-08 34.1 11.2 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|433589519|ref|YP_007279015.1| - 1.5e-06 28.0 6.6 1.5e-06 28.0 6.6 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|433589519|ref|YP_007279015.1| - 1.5e-06 27.6 16.5 1.5e-06 27.6 16.5 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|433589519|ref|YP_007279015.1| - 3.2e-06 26.7 12.2 3.2e-06 26.7 12.2 1.6 2 0 0 2 2 2 1 ABC-2 type transporter 7tm_7 PF08395.12 gi|433589519|ref|YP_007279015.1| - 3 7.0 11.7 1.1 8.4 7.3 2.2 2 1 0 2 2 2 0 7tm Chemosensory receptor DUF2070 PF09843.9 gi|433589519|ref|YP_007279015.1| - 5.8 5.1 18.3 0.44 8.8 13.0 1.7 2 1 0 2 2 2 0 Predicted membrane protein (DUF2070) ArsA_ATPase PF02374.15 gi|433589520|ref|YP_007279016.1| - 1.8e-78 263.8 0.0 2.1e-78 263.6 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|433589520|ref|YP_007279016.1| - 3.5e-09 36.8 0.0 1.6e-08 34.7 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|433589520|ref|YP_007279016.1| - 1.4e-07 31.6 0.0 6.5e-07 29.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|433589520|ref|YP_007279016.1| - 3.9e-05 23.2 0.6 0.0011 18.5 0.1 2.7 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|433589520|ref|YP_007279016.1| - 0.00075 19.0 0.7 0.0021 17.6 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CobA_CobO_BtuR PF02572.15 gi|433589520|ref|YP_007279016.1| - 0.024 14.9 1.4 9.4 6.5 0.9 3.0 2 1 1 3 3 3 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CBP_BcsQ PF06564.12 gi|433589520|ref|YP_007279016.1| - 0.034 13.6 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|433589520|ref|YP_007279016.1| - 0.035 13.7 0.3 0.22 11.2 0.2 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|433589520|ref|YP_007279016.1| - 0.043 13.3 0.0 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein Methyltransf_24 PF13578.6 gi|433589520|ref|YP_007279016.1| - 0.13 13.2 1.0 0.47 11.5 1.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain AAA_25 PF13481.6 gi|433589520|ref|YP_007279016.1| - 0.14 11.7 12.6 1.2 8.6 6.3 3.1 1 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|433589520|ref|YP_007279016.1| - 0.19 11.5 0.2 0.9 9.3 0.1 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF2721 PF11026.8 gi|433589521|ref|YP_007279017.1| - 0.17 11.8 2.4 0.19 11.7 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF3464 PF11947.8 gi|433589521|ref|YP_007279017.1| - 0.39 10.4 3.6 0.49 10.1 3.6 1.1 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 PsaM PF07465.13 gi|433589521|ref|YP_007279017.1| - 6.3 6.6 11.6 0.34 10.7 4.3 2.5 2 2 0 2 2 2 0 Photosystem I protein M (PsaM) Gram_pos_anchor PF00746.21 gi|433589522|ref|YP_007279018.1| - 0.03 14.2 4.0 0.39 10.7 0.3 2.1 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DUF4191 PF13829.6 gi|433589522|ref|YP_007279018.1| - 0.083 12.2 1.2 0.082 12.2 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) SKG6 PF08693.10 gi|433589522|ref|YP_007279018.1| - 0.38 10.2 10.9 2.8 7.4 0.1 2.3 2 0 0 2 2 2 0 Transmembrane alpha-helix domain CEND1 PF15677.5 gi|433589522|ref|YP_007279018.1| - 0.41 11.2 5.3 0.5 10.9 0.1 2.0 2 0 0 2 2 2 0 Cell cycle exit and neuronal differentiation protein 1 DNA_ligase_aden PF01653.18 gi|433589523|ref|YP_007279019.1| - 3.9e-106 354.7 0.0 5.4e-106 354.3 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|433589523|ref|YP_007279019.1| - 2.2e-30 104.4 2.1 4.8e-30 103.3 2.1 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|433589523|ref|YP_007279019.1| - 5.4e-19 68.1 1.7 9.6e-18 64.0 0.1 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|433589523|ref|YP_007279019.1| - 2.7e-17 63.1 0.0 2e-08 34.7 0.1 3.5 3 0 0 3 3 3 2 Helix-hairpin-helix domain BRCT PF00533.26 gi|433589523|ref|YP_007279019.1| - 5e-12 46.0 0.0 9.8e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.23 gi|433589523|ref|YP_007279019.1| - 9.6e-06 25.2 0.1 2 8.4 0.0 4.6 4 0 0 4 4 4 2 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.16 gi|433589523|ref|YP_007279019.1| - 0.00042 20.3 2.1 0.00042 20.3 2.1 2.6 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain 5_3_exonuc PF01367.20 gi|433589523|ref|YP_007279019.1| - 0.016 15.8 0.0 0.3 11.7 0.0 2.8 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Fer2 PF00111.27 gi|433589524|ref|YP_007279020.1| - 1.9e-09 37.4 0.0 2.9e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.11 gi|433589525|ref|YP_007279021.1| - 1.2e-198 660.5 0.2 1.4e-198 660.3 0.2 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.9 gi|433589525|ref|YP_007279021.1| - 0.097 11.9 0.0 0.42 9.8 0.0 2.0 2 0 0 2 2 2 0 Lactonase, 7-bladed beta-propeller Fer2 PF00111.27 gi|433589526|ref|YP_007279022.1| - 4.9e-11 42.4 1.0 3.4e-10 39.7 1.0 2.0 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FIST_C PF10442.9 gi|433589526|ref|YP_007279022.1| - 0.079 12.9 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 FIST C domain Na_H_antiporter PF03553.14 gi|433589527|ref|YP_007279023.1| - 7.7e-61 206.0 43.9 2.2e-54 184.8 24.8 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Gate PF07670.14 gi|433589527|ref|YP_007279023.1| - 0.27 11.5 13.0 0.047 14.0 2.4 3.3 2 1 0 2 2 2 0 Nucleoside recognition Reticulon PF02453.17 gi|433589527|ref|YP_007279023.1| - 1.8 8.5 0.0 1.8 8.5 0.0 3.4 4 0 0 4 4 4 0 Reticulon RIO1 PF01163.22 gi|433589528|ref|YP_007279024.1| - 1.8e-59 200.5 0.1 1.2e-58 197.8 0.0 1.9 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|433589528|ref|YP_007279024.1| - 4e-10 40.0 3.1 4.1e-05 23.6 0.0 2.9 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|433589528|ref|YP_007279024.1| - 2.5e-05 23.8 0.0 0.00017 21.0 0.0 1.9 2 0 0 2 2 2 1 Protein kinase domain Kdo PF06293.14 gi|433589528|ref|YP_007279024.1| - 2.9e-05 23.5 0.1 0.00076 18.9 0.1 2.3 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|433589528|ref|YP_007279024.1| - 0.00026 19.9 0.0 0.00038 19.3 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase VQ PF05678.14 gi|433589528|ref|YP_007279024.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 VQ motif YrbL-PhoP_reg PF10707.9 gi|433589528|ref|YP_007279024.1| - 0.12 11.8 0.2 0.38 10.3 0.0 1.9 2 1 0 2 2 2 0 PhoP regulatory network protein YrbL Metallophos_2 PF12850.7 gi|433589529|ref|YP_007279025.1| - 2.7e-32 112.2 2.1 3.1e-32 112.1 2.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|433589529|ref|YP_007279025.1| - 0.00019 22.0 6.5 0.0012 19.4 6.5 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|433589529|ref|YP_007279025.1| - 0.069 12.5 0.1 0.84 8.9 0.0 2.0 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily DUF2188 PF09954.9 gi|433589529|ref|YP_007279025.1| - 0.13 12.4 0.1 0.61 10.3 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) KH_1 PF00013.29 gi|433589530|ref|YP_007279026.1| - 2.2e-12 46.6 0.3 8.5e-07 28.7 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|433589530|ref|YP_007279026.1| - 6.4e-05 22.7 2.3 0.0079 16.0 0.1 2.5 2 1 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|433589530|ref|YP_007279026.1| - 0.0003 20.8 0.0 0.00047 20.2 0.0 1.3 1 0 0 1 1 1 1 Krr1 KH1 domain KH_4 PF13083.6 gi|433589530|ref|YP_007279026.1| - 0.019 14.8 3.7 1.7 8.6 0.3 3.0 2 1 1 3 3 3 0 KH domain Cpn60_TCP1 PF00118.24 gi|433589531|ref|YP_007279027.1| - 4.4e-175 583.0 16.2 5e-175 582.8 16.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family CsiV PF10972.8 gi|433589531|ref|YP_007279027.1| - 0.15 11.8 0.0 0.25 11.0 0.0 1.4 1 1 0 1 1 1 0 Peptidoglycan-binding protein, CsiV P-II PF00543.22 gi|433589531|ref|YP_007279027.1| - 0.16 12.6 3.9 3.1 8.5 0.1 3.5 3 0 0 3 3 3 0 Nitrogen regulatory protein P-II OCD_Mu_crystall PF02423.15 gi|433589532|ref|YP_007279028.1| - 2.7e-91 305.8 0.3 3.1e-91 305.6 0.3 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family DUF2071 PF09844.9 gi|433589533|ref|YP_007279029.1| - 5.2e-70 235.4 0.3 6e-70 235.2 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|433589533|ref|YP_007279029.1| - 2.1e-05 24.2 0.0 3.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) tRNA-synt_1 PF00133.22 gi|433589534|ref|YP_007279030.1| - 8e-71 239.1 3.6 1.2e-25 89.8 0.0 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|433589534|ref|YP_007279030.1| - 3.9e-58 196.0 0.0 8.8e-58 194.9 0.0 1.6 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|433589534|ref|YP_007279030.1| - 3.9e-40 137.8 0.8 5.3e-23 81.4 0.0 4.3 3 2 1 4 4 4 4 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|433589534|ref|YP_007279030.1| - 4.6e-16 59.1 0.0 9.7e-16 58.1 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|433589534|ref|YP_007279030.1| - 2.1e-09 37.2 0.0 1.7e-06 27.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|433589534|ref|YP_007279030.1| - 2.1e-06 26.9 0.0 0.00036 19.5 0.0 2.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) DZR PF12773.7 gi|433589534|ref|YP_007279030.1| - 0.0019 18.2 2.6 0.36 10.9 0.4 2.5 2 1 0 2 2 2 2 Double zinc ribbon IBR PF01485.21 gi|433589534|ref|YP_007279030.1| - 0.006 16.8 1.0 0.12 12.6 0.2 2.5 2 0 0 2 2 2 1 IBR domain, a half RING-finger domain Zn-ribbon_8 PF09723.10 gi|433589534|ref|YP_007279030.1| - 0.026 14.6 5.0 0.32 11.1 0.1 3.3 4 0 0 4 4 4 0 Zinc ribbon domain tRNA-synt_1b PF00579.25 gi|433589534|ref|YP_007279030.1| - 0.14 11.4 0.2 0.44 9.8 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) Syntaxin-6_N PF09177.11 gi|433589534|ref|YP_007279030.1| - 0.3 11.6 1.3 1.3 9.7 0.3 2.7 3 1 0 3 3 2 0 Syntaxin 6, N-terminal DNA_ligase_ZBD PF03119.16 gi|433589534|ref|YP_007279030.1| - 0.6 10.2 6.7 1.3 9.1 0.0 3.4 3 1 1 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|433589534|ref|YP_007279030.1| - 1.2 8.6 9.4 11 5.6 0.0 3.9 4 0 0 4 4 4 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|433589534|ref|YP_007279030.1| - 5.4 6.6 11.4 6 6.5 0.5 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding MMPL PF03176.15 gi|433589535|ref|YP_007279031.1| - 2e-37 128.9 16.8 1.5e-20 73.5 2.4 2.4 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|433589535|ref|YP_007279031.1| - 5.5e-11 42.5 8.4 9.4e-06 25.5 0.8 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|433589535|ref|YP_007279031.1| - 1.3e-08 33.5 24.3 7.7e-07 27.6 5.4 2.4 3 0 0 3 3 3 2 Patched family DUF2938 PF11158.8 gi|433589535|ref|YP_007279031.1| - 0.25 10.8 5.3 6.9 6.1 0.4 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2938) DUF2177 PF09945.9 gi|433589536|ref|YP_007279032.1| - 0.0023 18.0 0.2 0.0024 17.9 0.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2177) DUF2530 PF10745.9 gi|433589536|ref|YP_007279032.1| - 0.022 15.0 2.2 0.024 14.9 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) TrkH PF02386.16 gi|433589537|ref|YP_007279033.1| - 9.1e-75 252.0 12.8 7.2e-74 249.0 12.8 2.0 1 1 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|433589538|ref|YP_007279034.1| - 4.9e-25 88.1 0.5 8.9e-25 87.2 0.5 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|433589538|ref|YP_007279034.1| - 1.3e-08 34.5 1.8 9.4e-08 31.8 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|433589538|ref|YP_007279034.1| - 0.0018 18.8 0.2 0.013 16.1 0.0 2.4 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|433589538|ref|YP_007279034.1| - 0.0064 16.6 0.1 0.0098 16.0 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|433589538|ref|YP_007279034.1| - 0.011 16.0 0.1 0.017 15.4 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ADH_zinc_N PF00107.26 gi|433589538|ref|YP_007279034.1| - 0.033 14.2 0.0 0.3 11.1 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding dehydrogenase XdhC_C PF13478.6 gi|433589538|ref|YP_007279034.1| - 0.061 13.8 0.2 0.095 13.2 0.2 1.4 1 1 0 1 1 1 0 XdhC Rossmann domain NAD_binding_7 PF13241.6 gi|433589538|ref|YP_007279034.1| - 0.089 13.2 0.5 0.11 12.9 0.5 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|433589538|ref|YP_007279034.1| - 0.14 12.0 2.6 0.3 10.9 1.0 2.0 1 1 0 2 2 2 0 NAD(P)H-binding GIDE PF12483.8 gi|433589539|ref|YP_007279035.1| - 0.11 11.9 0.7 0.56 9.6 0.0 2.0 2 0 0 2 2 2 0 E3 Ubiquitin ligase HSP20 PF00011.21 gi|433589540|ref|YP_007279036.1| - 1.4e-18 66.9 0.0 2.1e-18 66.4 0.0 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|433589540|ref|YP_007279036.1| - 1.7e-10 40.3 0.0 2.6e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA TetR_C_31 PF17940.1 gi|433589540|ref|YP_007279036.1| - 0.0042 17.3 1.2 0.0077 16.4 0.9 1.6 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain AhpC-TSA PF00578.21 gi|433589541|ref|YP_007279037.1| - 2.1e-31 108.4 0.0 2.6e-31 108.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|433589541|ref|YP_007279037.1| - 1.1e-19 70.6 0.0 1.3e-19 70.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|433589541|ref|YP_007279037.1| - 1.5e-08 34.7 0.0 2e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|433589541|ref|YP_007279037.1| - 0.0026 17.3 0.0 0.0032 17.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) DUF2613 PF11021.8 gi|433589542|ref|YP_007279038.1| - 0.28 11.3 2.7 0.39 10.9 2.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) PDT PF00800.18 gi|433589543|ref|YP_007279039.1| - 1.9e-48 164.7 0.0 2.5e-48 164.3 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|433589543|ref|YP_007279039.1| - 1.4e-06 27.9 0.0 3.5e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 ACT domain MFS_1 PF07690.16 gi|433589544|ref|YP_007279040.1| - 1.1e-34 119.9 43.8 1.1e-34 119.9 43.8 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|433589544|ref|YP_007279040.1| - 0.00011 21.1 18.0 0.0014 17.6 1.6 3.5 1 1 1 3 3 3 2 MFS_1 like family DUF2417 PF10329.9 gi|433589544|ref|YP_007279040.1| - 0.87 9.0 7.6 0.11 11.9 0.3 2.5 3 0 0 3 3 3 0 Region of unknown function (DUF2417) MC1 PF05854.11 gi|433589545|ref|YP_007279041.1| - 2.3e-46 156.0 0.2 2.8e-46 155.8 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 SymE_toxin PF08845.10 gi|433589546|ref|YP_007279042.1| - 0.00022 21.2 0.0 0.00023 21.1 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system MazE_antitoxin PF04014.18 gi|433589546|ref|YP_007279042.1| - 0.014 15.3 0.4 0.021 14.8 0.4 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin Arcadin_1 PF18653.1 gi|433589546|ref|YP_007279042.1| - 0.069 13.2 0.0 0.073 13.1 0.0 1.1 1 0 0 1 1 1 0 Arcadin 1 tRNA_synthFbeta PF17759.1 gi|433589547|ref|YP_007279043.1| - 6.4e-42 143.4 0.0 8.8e-42 143.0 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|433589547|ref|YP_007279043.1| - 2.9e-15 56.3 0.2 1.4e-14 54.1 0.3 2.2 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|433589547|ref|YP_007279043.1| - 1.1e-12 47.9 0.0 1.8e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|433589547|ref|YP_007279043.1| - 1.6e-06 28.3 1.4 0.00039 20.6 0.1 3.7 4 1 0 4 4 4 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|433589547|ref|YP_007279043.1| - 0.00048 19.7 0.0 0.00078 19.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.20 gi|433589548|ref|YP_007279044.1| - 3.7e-80 268.9 0.0 4.7e-80 268.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) MarR_2 PF12802.7 gi|433589548|ref|YP_007279044.1| - 7.6e-06 25.7 1.9 0.009 15.9 0.1 2.7 2 0 0 2 2 2 2 MarR family MarR PF01047.22 gi|433589548|ref|YP_007279044.1| - 1.1e-05 25.3 0.0 0.043 13.7 0.0 2.9 3 0 0 3 3 3 2 MarR family DprA_WH PF17782.1 gi|433589548|ref|YP_007279044.1| - 8.3e-05 22.6 2.0 8.3e-05 22.6 2.0 3.8 4 0 0 4 4 4 1 DprA winged helix domain tRNA-synt_2 PF00152.20 gi|433589548|ref|YP_007279044.1| - 0.0012 18.0 0.3 0.11 11.6 0.1 2.2 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) HTH_24 PF13412.6 gi|433589548|ref|YP_007279044.1| - 0.0097 15.4 0.0 0.024 14.2 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding tRNA_synthFbeta PF17759.1 gi|433589548|ref|YP_007279044.1| - 0.01 15.3 0.0 0.56 9.6 0.0 2.5 2 0 0 2 2 2 0 Phenylalanyl tRNA synthetase beta chain CLM domain TrmB PF01978.19 gi|433589548|ref|YP_007279044.1| - 0.026 14.4 0.3 6.6 6.7 0.0 3.1 3 1 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|433589548|ref|YP_007279044.1| - 0.046 14.2 0.3 4.9 7.7 0.1 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|433589548|ref|YP_007279044.1| - 0.066 13.0 0.4 0.23 11.3 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433589548|ref|YP_007279044.1| - 0.088 12.8 0.1 2 8.4 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|433589548|ref|YP_007279044.1| - 0.2 12.0 0.0 0.51 10.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PAS_4 PF08448.10 gi|433589550|ref|YP_007279046.1| - 1.6e-25 89.5 3.1 4e-12 46.4 0.1 2.9 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|433589550|ref|YP_007279046.1| - 1.4e-17 64.2 0.0 3e-17 63.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|433589550|ref|YP_007279046.1| - 5.9e-16 58.6 0.0 1.4e-07 31.7 0.0 2.6 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|433589550|ref|YP_007279046.1| - 1.1e-11 44.6 0.2 1.3e-10 41.1 0.0 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|433589550|ref|YP_007279046.1| - 6.3e-06 26.2 0.0 0.00079 19.4 0.0 2.8 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|433589550|ref|YP_007279046.1| - 0.0072 16.3 0.9 0.094 12.8 0.1 3.0 3 0 0 3 3 3 1 PAS domain tRNA-synt_1b PF00579.25 gi|433589551|ref|YP_007279047.1| - 7.4e-44 150.2 0.0 3.4e-26 92.2 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) OCD_Mu_crystall PF02423.15 gi|433589552|ref|YP_007279048.1| - 1.5e-42 145.6 0.0 2e-42 145.3 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|433589552|ref|YP_007279048.1| - 0.00014 21.9 0.0 0.00024 21.2 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|433589552|ref|YP_007279048.1| - 0.0012 19.4 0.0 0.0028 18.2 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_C PF03720.15 gi|433589552|ref|YP_007279048.1| - 0.013 15.9 0.3 0.36 11.3 0.0 2.7 2 1 1 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain tRNA_int_endo PF01974.17 gi|433589553|ref|YP_007279049.1| - 1.4e-29 101.9 0.1 1.3e-24 86.0 0.0 3.6 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|433589553|ref|YP_007279049.1| - 1.1e-23 82.7 0.1 3.4e-11 42.7 0.0 2.5 3 0 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|433589553|ref|YP_007279049.1| - 0.063 13.5 0.4 9.7 6.4 0.0 2.4 2 0 0 2 2 2 0 tRNA-splicing endonuclease subunit sen54 N-term NucS PF01939.16 gi|433589555|ref|YP_007279051.1| - 0.00061 19.2 0.0 0.00081 18.8 0.0 1.2 1 0 0 1 1 1 1 Endonuclease NucS zf-C4_Topoisom PF01396.19 gi|433589555|ref|YP_007279051.1| - 0.0017 18.1 6.4 0.043 13.6 0.4 2.8 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_16 PF17034.5 gi|433589555|ref|YP_007279051.1| - 0.033 14.4 0.8 0.052 13.8 0.8 1.3 1 0 0 1 1 1 0 Zinc-ribbon like family CdvA PF18822.1 gi|433589556|ref|YP_007279052.1| - 0.00043 20.1 0.4 0.00065 19.5 0.4 1.3 1 0 0 1 1 1 1 CdvA-like coiled-coil domain GvpG PF05120.12 gi|433589556|ref|YP_007279052.1| - 0.0085 16.1 0.9 0.018 15.0 0.9 1.5 1 0 0 1 1 1 1 Gas vesicle protein G HR1 PF02185.16 gi|433589556|ref|YP_007279052.1| - 0.018 15.1 0.1 0.035 14.2 0.1 1.4 1 0 0 1 1 1 0 Hr1 repeat DUF3450 PF11932.8 gi|433589556|ref|YP_007279052.1| - 2.4 7.4 7.1 0.15 11.3 1.9 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) HTH_27 PF13463.6 gi|433589557|ref|YP_007279053.1| - 0.0017 18.8 0.1 0.004 17.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4897 PF16238.5 gi|433589557|ref|YP_007279053.1| - 0.008 16.0 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4897) CwsA PF10814.8 gi|433589557|ref|YP_007279053.1| - 0.32 11.2 3.3 2 8.6 0.0 2.7 3 0 0 3 3 3 0 Cell wall synthesis protein CwsA DUF4148 PF13663.6 gi|433589561|ref|YP_007279057.1| - 0.022 14.9 0.5 0.038 14.2 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4148) DJ-1_PfpI PF01965.24 gi|433589562|ref|YP_007279058.1| - 1.1e-29 103.4 0.1 1.3e-29 103.1 0.1 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|433589562|ref|YP_007279058.1| - 0.00072 19.2 0.0 0.013 15.1 0.0 2.0 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain HAD_2 PF13419.6 gi|433589563|ref|YP_007279059.1| - 8.2e-29 100.9 0.0 9.8e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433589563|ref|YP_007279059.1| - 1.6e-17 64.5 0.6 2.7e-16 60.5 0.6 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433589563|ref|YP_007279059.1| - 3.1e-11 44.0 0.6 4.1e-11 43.6 0.6 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433589563|ref|YP_007279059.1| - 4.1e-09 36.4 0.3 1.2e-08 34.8 0.3 1.9 1 0 0 1 1 1 1 HAD-hyrolase-like Ufm1 PF03671.14 gi|433589563|ref|YP_007279059.1| - 0.036 14.2 0.0 0.063 13.4 0.0 1.3 1 0 0 1 1 1 0 Ubiquitin fold modifier 1 protein DEAD PF00270.29 gi|433589564|ref|YP_007279060.1| - 1.1e-23 83.9 0.0 2.2e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sec63 PF02889.16 gi|433589564|ref|YP_007279060.1| - 2.4e-14 53.1 0.0 3.3e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|433589564|ref|YP_007279060.1| - 2e-11 44.2 0.0 3e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|433589564|ref|YP_007279060.1| - 5.9e-09 36.2 0.0 4.4e-08 33.4 0.0 2.4 1 1 0 1 1 1 1 Helicase conserved C-terminal domain AAA_30 PF13604.6 gi|433589564|ref|YP_007279060.1| - 0.021 14.5 0.1 0.37 10.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain UTP25 PF06862.12 gi|433589564|ref|YP_007279060.1| - 0.046 12.5 0.0 0.066 12.0 0.0 1.1 1 0 0 1 1 1 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 HHH_5 PF14520.6 gi|433589564|ref|YP_007279060.1| - 0.052 14.2 0.8 0.24 12.0 0.8 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix domain bPH_2 PF03703.14 gi|433589566|ref|YP_007279062.1| - 4.3e-19 68.5 0.2 6.2e-19 68.0 0.2 1.3 1 0 0 1 1 1 1 Bacterial PH domain ATP-synt_Z PF16594.5 gi|433589566|ref|YP_007279062.1| - 0.089 12.3 3.1 0.13 11.7 0.1 2.2 2 0 0 2 2 2 0 Putative AtpZ or ATP-synthase-associated Radical_SAM PF04055.21 gi|433589567|ref|YP_007279063.1| - 1.6e-13 51.4 0.1 3.8e-13 50.2 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 gi|433589567|ref|YP_007279063.1| - 1.4e-10 41.5 0.0 2.9e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family B12-binding PF02310.19 gi|433589567|ref|YP_007279063.1| - 0.068 13.2 0.1 2.7 8.0 0.1 2.9 1 1 1 3 3 3 0 B12 binding domain E1_dh PF00676.20 gi|433589568|ref|YP_007279064.1| - 2e-90 302.8 0.0 2.4e-90 302.5 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|433589568|ref|YP_007279064.1| - 1.1e-07 31.3 0.0 1.8e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|433589568|ref|YP_007279064.1| - 0.00037 20.3 0.0 0.00083 19.2 0.0 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|433589568|ref|YP_007279064.1| - 0.0012 17.9 0.0 0.0016 17.4 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain HTH_41 PF14502.6 gi|433589568|ref|YP_007279064.1| - 0.015 14.9 0.0 0.039 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Glyco_hydro_114 PF03537.13 gi|433589568|ref|YP_007279064.1| - 0.016 14.5 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Glycoside-hydrolase family GH114 Transket_pyr PF02779.24 gi|433589569|ref|YP_007279065.1| - 2.2e-50 170.8 0.0 3e-50 170.4 0.0 1.1 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|433589569|ref|YP_007279065.1| - 4.1e-38 130.0 0.0 6.4e-38 129.4 0.0 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|433589569|ref|YP_007279065.1| - 0.0034 17.7 0.0 0.0066 16.7 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II 2-oxoacid_dh PF00198.23 gi|433589570|ref|YP_007279066.1| - 9.9e-90 300.0 0.0 1.3e-89 299.6 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|433589570|ref|YP_007279066.1| - 2.8e-23 81.5 1.3 5.9e-23 80.5 1.3 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|433589570|ref|YP_007279066.1| - 3e-21 75.5 1.1 3.8e-15 55.9 0.4 2.8 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|433589570|ref|YP_007279066.1| - 6.8e-05 22.6 5.8 0.002 17.9 0.3 3.1 2 1 1 3 3 3 2 Biotin-lipoyl like GCV_H PF01597.19 gi|433589570|ref|YP_007279066.1| - 7.9e-05 22.5 0.3 0.00021 21.2 0.3 1.7 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_3 PF13437.6 gi|433589570|ref|YP_007279066.1| - 0.0011 19.6 4.2 0.011 16.4 0.3 2.8 2 1 1 3 3 3 1 HlyD family secretion protein RnfC_N PF13375.6 gi|433589570|ref|YP_007279066.1| - 0.0031 17.5 0.2 0.0084 16.1 0.2 1.7 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Period_C PF12114.8 gi|433589570|ref|YP_007279066.1| - 5.7 6.5 10.4 10 5.6 10.4 1.3 1 0 0 1 1 1 0 Period protein 2/3C-terminal region Pyr_redox_2 PF07992.14 gi|433589571|ref|YP_007279067.1| - 1.1e-65 221.8 5.0 1.3e-65 221.6 2.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|433589571|ref|YP_007279067.1| - 3.4e-38 130.3 1.4 5.3e-38 129.7 0.2 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|433589571|ref|YP_007279067.1| - 1.4e-22 80.1 0.8 7.5e-19 68.1 0.0 3.3 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|433589571|ref|YP_007279067.1| - 3.5e-10 39.5 1.7 4.5e-07 29.3 0.4 2.5 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|433589571|ref|YP_007279067.1| - 1.8e-08 34.5 1.1 0.0013 18.9 0.3 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|433589571|ref|YP_007279067.1| - 2.8e-08 33.3 6.4 3.2e-06 26.5 0.4 3.3 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|433589571|ref|YP_007279067.1| - 3.5e-08 33.1 0.2 0.0011 18.3 0.1 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|433589571|ref|YP_007279067.1| - 2.6e-07 29.7 4.3 2.2e-05 23.4 0.1 2.8 4 0 0 4 4 4 2 HI0933-like protein Lycopene_cycl PF05834.12 gi|433589571|ref|YP_007279067.1| - 4.3e-06 26.0 0.7 0.0026 16.9 0.0 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|433589571|ref|YP_007279067.1| - 6.6e-06 25.6 5.7 0.039 13.2 1.1 3.3 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|433589571|ref|YP_007279067.1| - 8.2e-06 25.2 3.0 0.0023 17.2 0.3 3.0 3 0 0 3 3 3 2 Thi4 family FAD_binding_3 PF01494.19 gi|433589571|ref|YP_007279067.1| - 9.2e-06 25.1 2.8 0.017 14.4 0.3 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|433589571|ref|YP_007279067.1| - 9.2e-06 25.3 1.0 9.2e-06 25.3 1.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|433589571|ref|YP_007279067.1| - 0.00025 20.7 3.6 0.0014 18.2 0.3 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|433589571|ref|YP_007279067.1| - 0.00025 20.7 13.4 0.044 13.3 1.1 3.5 3 1 0 4 4 4 2 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|433589571|ref|YP_007279067.1| - 0.00062 19.7 3.1 0.0022 17.9 0.0 2.5 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|433589571|ref|YP_007279067.1| - 0.0014 19.0 0.2 1.1 9.7 0.0 2.7 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|433589571|ref|YP_007279067.1| - 0.004 17.4 2.8 0.083 13.2 0.0 3.1 3 0 0 3 3 3 1 TrkA-N domain XdhC_C PF13478.6 gi|433589571|ref|YP_007279067.1| - 0.0061 17.1 3.4 0.12 12.9 0.4 3.1 3 1 0 3 3 3 1 XdhC Rossmann domain Trp_halogenase PF04820.14 gi|433589571|ref|YP_007279067.1| - 0.0072 15.2 2.3 0.017 14.0 0.1 2.1 2 0 0 2 2 2 1 Tryptophan halogenase 2-Hacid_dh_C PF02826.19 gi|433589571|ref|YP_007279067.1| - 0.016 14.6 0.2 0.92 8.8 0.0 2.7 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Chlorosome_CsmC PF11098.8 gi|433589571|ref|YP_007279067.1| - 0.045 13.7 0.4 0.42 10.6 0.0 2.6 3 0 0 3 3 3 0 Chlorosome envelope protein C NAD_binding_9 PF13454.6 gi|433589571|ref|YP_007279067.1| - 0.88 9.5 6.2 1.7 8.6 0.0 3.4 4 0 0 4 4 4 0 FAD-NAD(P)-binding 7TMR-DISM_7TM PF07695.11 gi|433589572|ref|YP_007279068.1| - 0.032 14.1 10.6 0.039 13.9 10.6 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling HTH_20 PF12840.7 gi|433589573|ref|YP_007279069.1| - 1.6e-13 50.5 0.2 2.8e-13 49.7 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433589573|ref|YP_007279069.1| - 0.00041 20.1 0.2 0.00072 19.3 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433589573|ref|YP_007279069.1| - 0.00049 19.9 0.0 0.00097 19.0 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433589573|ref|YP_007279069.1| - 0.00058 19.7 0.1 0.0013 18.6 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|433589573|ref|YP_007279069.1| - 0.0018 18.1 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|433589573|ref|YP_007279069.1| - 0.0032 17.5 0.0 0.0069 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase CENP-B_N PF04218.13 gi|433589573|ref|YP_007279069.1| - 0.0075 15.9 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_11 PF08279.12 gi|433589573|ref|YP_007279069.1| - 0.022 14.7 0.1 0.045 13.7 0.1 1.4 1 0 0 1 1 1 0 HTH domain FUR PF01475.19 gi|433589573|ref|YP_007279069.1| - 0.026 14.6 0.0 0.041 14.0 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family DUF5329 PF17263.2 gi|433589574|ref|YP_007279070.1| - 0.02 15.0 0.2 0.029 14.6 0.1 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5329) DUF5327 PF17261.2 gi|433589574|ref|YP_007279070.1| - 0.22 12.3 3.0 0.27 12.0 3.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5327) SWIM PF04434.17 gi|433589576|ref|YP_007279072.1| - 0.0001 21.9 0.1 0.00022 20.8 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger DUF1678 PF07913.11 gi|433589576|ref|YP_007279072.1| - 0.029 14.1 0.0 0.05 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1678) Med29 PF11568.8 gi|433589576|ref|YP_007279072.1| - 0.079 13.2 0.3 0.27 11.5 0.1 1.9 2 0 0 2 2 2 0 Mediator complex subunit 29 DUF892 PF05974.12 gi|433589580|ref|YP_007279076.1| - 1.1e-45 155.5 9.5 1.3e-45 155.2 9.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.24 gi|433589580|ref|YP_007279076.1| - 0.00049 20.1 12.7 0.0011 19.0 12.7 1.6 1 1 0 1 1 1 1 Ferritin-like domain Vir_act_alpha_C PF10400.9 gi|433589580|ref|YP_007279076.1| - 0.016 15.9 5.9 1.2 9.9 0.4 2.8 2 1 0 2 2 2 0 Virulence activator alpha C-term DUF2383 PF09537.10 gi|433589580|ref|YP_007279076.1| - 0.059 13.7 4.6 0.37 11.1 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) FlgN PF05130.12 gi|433589580|ref|YP_007279076.1| - 0.2 12.2 6.0 1.9 9.0 0.7 2.4 2 1 0 2 2 2 0 FlgN protein GvpG PF05120.12 gi|433589580|ref|YP_007279076.1| - 0.93 9.5 9.5 4.8 7.3 1.7 2.5 2 0 0 2 2 2 0 Gas vesicle protein G Acetyltransf_1 PF00583.25 gi|433589581|ref|YP_007279077.1| - 2.1e-18 66.6 0.0 2.6e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|433589581|ref|YP_007279077.1| - 4.7e-14 52.4 0.0 5.1e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|433589581|ref|YP_007279077.1| - 7e-14 52.0 0.0 1e-13 51.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|433589581|ref|YP_007279077.1| - 1.3e-08 34.9 0.0 4.1e-08 33.4 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433589581|ref|YP_007279077.1| - 3.9e-06 26.7 0.0 8.9e-06 25.6 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|433589581|ref|YP_007279077.1| - 0.0057 17.3 0.0 0.0097 16.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|433589581|ref|YP_007279077.1| - 0.012 15.3 0.0 0.017 14.8 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|433589581|ref|YP_007279077.1| - 0.019 15.1 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain zf-C2H2_9 PF16293.5 gi|433589582|ref|YP_007279078.1| - 0.0073 16.1 0.1 0.011 15.5 0.1 1.3 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) SpoVAD PF07451.11 gi|433589583|ref|YP_007279079.1| - 0.067 11.9 0.0 0.069 11.8 0.0 1.1 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) NUDIX PF00293.28 gi|433589584|ref|YP_007279080.1| - 8.4e-16 58.2 0.6 1.3e-15 57.6 0.6 1.3 1 0 0 1 1 1 1 NUDIX domain Rhodanese PF00581.20 gi|433589585|ref|YP_007279081.1| - 1.2e-11 45.0 0.0 1.4e-11 44.8 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain SUI1 PF01253.22 gi|433589586|ref|YP_007279082.1| - 4.8e-22 78.3 0.0 5.8e-22 78.0 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|433589586|ref|YP_007279082.1| - 0.0061 16.8 0.0 0.0078 16.5 0.0 1.4 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|433589586|ref|YP_007279082.1| - 0.0081 15.9 0.4 0.0097 15.6 0.4 1.1 1 0 0 1 1 1 1 DTW domain Transglut_core PF01841.19 gi|433589587|ref|YP_007279083.1| - 5.5e-29 100.9 0.0 1.2e-28 99.7 0.0 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|433589587|ref|YP_007279083.1| - 4.3e-06 26.9 13.2 4.3e-06 26.9 13.2 2.9 2 1 1 3 3 3 1 Domain of unknown function (DUF4129) DUF3488 PF11992.8 gi|433589587|ref|YP_007279083.1| - 1.7e-05 23.9 0.0 1.7e-05 23.9 0.0 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF3488) Transglut_core3 PF13471.6 gi|433589587|ref|YP_007279083.1| - 0.00054 19.9 1.0 0.0039 17.1 0.0 2.8 2 1 1 3 3 3 1 Transglutaminase-like superfamily DUF543 PF04418.12 gi|433589587|ref|YP_007279083.1| - 0.91 9.6 3.6 2.6 8.1 3.6 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF543) DUF58 PF01882.18 gi|433589588|ref|YP_007279084.1| - 9.2e-16 57.9 0.6 1.5e-14 54.0 0.3 2.4 2 0 0 2 2 2 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|433589589|ref|YP_007279085.1| - 6.6e-60 200.7 0.1 1.4e-59 199.7 0.1 1.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|433589589|ref|YP_007279085.1| - 5.6e-18 64.6 1.0 3.5e-17 62.0 0.6 2.3 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|433589589|ref|YP_007279085.1| - 1.3e-14 54.4 0.0 3.1e-14 53.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|433589589|ref|YP_007279085.1| - 1.2e-06 28.4 0.0 0.00086 19.1 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA PF00004.29 gi|433589589|ref|YP_007279085.1| - 6.3e-06 26.6 0.0 2e-05 25.0 0.0 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|433589589|ref|YP_007279085.1| - 3.9e-05 22.9 0.0 6.5e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|433589589|ref|YP_007279085.1| - 6.3e-05 22.5 0.1 0.0017 17.8 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|433589589|ref|YP_007279085.1| - 0.00035 20.4 0.0 0.0044 16.8 0.0 2.5 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain CSD PF00313.22 gi|433589590|ref|YP_007279086.1| - 2.7e-20 72.0 0.1 2.9e-20 71.9 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|433589590|ref|YP_007279086.1| - 0.022 14.4 2.5 0.029 14.0 2.5 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain A2L_zn_ribbon PF08792.10 gi|433589591|ref|YP_007279087.1| - 0.0014 18.3 1.0 0.0066 16.1 1.0 1.9 1 1 0 1 1 1 1 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|433589591|ref|YP_007279087.1| - 0.01 15.9 0.6 0.02 15.0 0.6 1.4 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|433589591|ref|YP_007279087.1| - 0.068 13.2 0.2 0.074 13.1 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_9 PF14369.6 gi|433589591|ref|YP_007279087.1| - 0.094 13.0 3.7 0.23 11.7 3.6 1.7 1 1 1 2 2 2 0 zinc-ribbon TF_Zn_Ribbon PF08271.12 gi|433589591|ref|YP_007279087.1| - 0.12 11.9 3.7 0.95 9.0 4.1 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|433589591|ref|YP_007279087.1| - 0.24 11.4 5.3 4.2 7.4 0.2 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain SR1P PF13790.6 gi|433589591|ref|YP_007279087.1| - 0.3 11.2 2.9 0.99 9.6 0.1 2.6 3 0 0 3 3 3 0 SR1 protein zf-ribbon_3 PF13248.6 gi|433589591|ref|YP_007279087.1| - 1.4 8.5 5.5 41 3.8 5.5 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Bac_luciferase PF00296.20 gi|433589593|ref|YP_007279089.1| - 6.4e-65 219.6 7.2 6.4e-65 219.6 7.2 1.4 1 1 1 2 2 2 1 Luciferase-like monooxygenase F420_ligase PF01996.16 gi|433589594|ref|YP_007279090.1| - 1.4e-60 204.7 0.0 1.7e-60 204.4 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Amdase PF17645.1 gi|433589595|ref|YP_007279091.1| - 2.3e-36 125.5 0.2 2.8e-36 125.2 0.2 1.0 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|433589595|ref|YP_007279091.1| - 1e-13 51.7 0.0 1.3e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Peripla_BP_6 PF13458.6 gi|433589595|ref|YP_007279091.1| - 0.01 15.6 2.3 0.05 13.2 0.2 2.4 2 1 0 2 2 2 0 Periplasmic binding protein B12-binding PF02310.19 gi|433589595|ref|YP_007279091.1| - 0.042 13.9 1.9 0.88 9.6 0.0 2.9 1 1 2 3 3 3 0 B12 binding domain Nitro_FeMo-Co PF02579.17 gi|433589595|ref|YP_007279091.1| - 0.043 14.1 2.3 1.3 9.5 0.1 3.1 1 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor AroM PF07302.11 gi|433589595|ref|YP_007279091.1| - 0.049 13.0 0.0 1.3 8.4 0.0 2.5 1 1 1 2 2 2 0 AroM protein Hydantoinase_B PF02538.14 gi|433589596|ref|YP_007279092.1| - 1.9e-206 686.5 6.7 2.1e-206 686.3 6.7 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|433589597|ref|YP_007279093.1| - 1.8e-98 329.4 11.0 1.9e-97 326.0 5.5 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|433589597|ref|YP_007279093.1| - 4.4e-50 169.8 1.3 1.9e-49 167.8 0.0 2.3 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region Nramp PF01566.18 gi|433589598|ref|YP_007279094.1| - 5.3e-97 325.0 22.8 6.5e-97 324.7 22.8 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein EIID-AGA PF03613.14 gi|433589598|ref|YP_007279094.1| - 0.0016 17.7 0.1 0.0016 17.7 0.1 3.2 3 1 0 3 3 3 1 PTS system mannose/fructose/sorbose family IID component RHH_1 PF01402.21 gi|433589599|ref|YP_007279095.1| - 2.2e-09 36.9 0.0 5.2e-09 35.7 0.0 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|433589599|ref|YP_007279095.1| - 0.0015 18.4 0.0 0.003 17.5 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain PSK_trans_fac PF07704.11 gi|433589599|ref|YP_007279095.1| - 0.034 14.9 0.0 0.11 13.2 0.0 1.8 2 0 0 2 2 2 0 Rv0623-like transcription factor VapB_antitoxin PF09957.9 gi|433589599|ref|YP_007279095.1| - 4.2 7.4 5.0 7.1 6.6 1.1 3.3 2 2 1 3 3 3 0 Bacterial antitoxin of type II TA system, VapB Metallophos_2 PF12850.7 gi|433589600|ref|YP_007279096.1| - 5.1e-23 82.1 0.7 6.4e-23 81.7 0.7 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain baeRF_family2 PF18844.1 gi|433589600|ref|YP_007279096.1| - 0.0042 17.2 3.7 0.01 15.9 3.7 1.6 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 2 Metallophos PF00149.28 gi|433589600|ref|YP_007279096.1| - 0.053 14.0 0.1 0.34 11.4 0.0 1.8 1 1 1 2 2 2 0 Calcineurin-like phosphoesterase IF-2B PF01008.17 gi|433589601|ref|YP_007279097.1| - 2e-43 148.6 0.2 3.1e-43 148.0 0.2 1.2 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.28 gi|433589601|ref|YP_007279097.1| - 7e-08 32.6 1.1 2e-07 31.1 1.1 1.7 1 0 0 1 1 1 1 NUDIX domain HTH_11 PF08279.12 gi|433589602|ref|YP_007279098.1| - 2.4e-05 24.2 0.0 3.1e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|433589602|ref|YP_007279098.1| - 2.7e-05 23.6 0.0 3.3e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433589602|ref|YP_007279098.1| - 0.00035 20.4 0.1 0.00067 19.4 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433589602|ref|YP_007279098.1| - 0.00058 19.8 0.9 0.00088 19.2 0.5 1.5 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|433589602|ref|YP_007279098.1| - 0.00067 19.5 0.7 0.0009 19.1 0.7 1.3 1 1 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|433589602|ref|YP_007279098.1| - 0.0022 17.7 0.2 0.0051 16.5 0.3 1.5 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|433589602|ref|YP_007279098.1| - 0.0072 16.4 0.1 0.0098 15.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|433589602|ref|YP_007279098.1| - 0.0096 15.8 0.1 0.014 15.3 0.1 1.3 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 gi|433589602|ref|YP_007279098.1| - 0.014 15.5 0.1 0.029 14.4 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR PF01047.22 gi|433589602|ref|YP_007279098.1| - 0.014 15.3 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 MarR family GntR PF00392.21 gi|433589602|ref|YP_007279098.1| - 0.018 14.7 0.5 0.026 14.2 0.5 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|433589602|ref|YP_007279098.1| - 0.022 14.6 0.1 0.03 14.1 0.1 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Replic_Relax PF13814.6 gi|433589602|ref|YP_007279098.1| - 0.048 13.7 0.1 0.062 13.4 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation Rrf2 PF02082.20 gi|433589602|ref|YP_007279098.1| - 0.069 13.5 0.1 1.1 9.7 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator HTH_36 PF13730.6 gi|433589602|ref|YP_007279098.1| - 0.076 13.0 0.0 0.098 12.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain RepL PF05732.11 gi|433589602|ref|YP_007279098.1| - 0.095 12.1 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_10 PF04967.12 gi|433589602|ref|YP_007279098.1| - 0.11 12.3 0.1 0.5 10.2 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain MCD_N PF17408.2 gi|433589602|ref|YP_007279098.1| - 0.11 12.6 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 Malonyl-CoA decarboxylase N-terminal domain TBPIP PF07106.13 gi|433589602|ref|YP_007279098.1| - 0.12 12.3 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_Mga PF08280.11 gi|433589602|ref|YP_007279098.1| - 0.18 11.8 0.1 0.28 11.2 0.1 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain OrfB_IS605 PF01385.19 gi|433589603|ref|YP_007279099.1| - 1.8e-22 79.8 0.6 3.5e-22 78.9 0.6 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|433589603|ref|YP_007279099.1| - 2.5e-16 59.3 0.5 7.3e-16 57.8 0.3 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|433589603|ref|YP_007279099.1| - 0.021 14.8 5.0 0.048 13.6 5.0 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|433589603|ref|YP_007279099.1| - 0.33 11.3 6.8 0.8 10.0 6.8 1.7 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Zn-ribbon_8 PF09723.10 gi|433589603|ref|YP_007279099.1| - 0.6 10.3 4.2 7.2 6.8 0.4 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2_11 PF16622.5 gi|433589603|ref|YP_007279099.1| - 1.9 8.3 5.2 2.9 7.7 0.1 2.4 2 0 0 2 2 2 0 zinc-finger C2H2-type 2-Hacid_dh_C PF02826.19 gi|433589604|ref|YP_007279100.1| - 1.6e-49 167.7 0.0 2e-49 167.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|433589604|ref|YP_007279100.1| - 2.9e-07 30.2 0.0 3.6e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|433589604|ref|YP_007279100.1| - 2.9e-05 24.2 0.3 0.22 11.5 0.0 2.3 2 0 0 2 2 2 2 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|433589604|ref|YP_007279100.1| - 0.031 14.5 0.0 0.047 13.8 0.0 1.2 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DpaA_N PF16924.5 gi|433589604|ref|YP_007279100.1| - 0.098 12.8 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain Nup35_RRM_2 PF14605.6 gi|433589604|ref|YP_007279100.1| - 0.11 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif DUF4440 PF14534.6 gi|433589604|ref|YP_007279100.1| - 0.16 12.4 1.0 0.79 10.1 0.1 2.6 2 1 0 3 3 3 0 Domain of unknown function (DUF4440) MMR_HSR1 PF01926.23 gi|433589605|ref|YP_007279101.1| - 6.2e-19 68.2 0.0 9e-19 67.6 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|433589605|ref|YP_007279101.1| - 1.8e-13 50.3 0.1 3.4e-12 46.2 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|433589605|ref|YP_007279101.1| - 2.5e-06 27.2 0.0 0.00032 20.3 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|433589605|ref|YP_007279101.1| - 0.00011 22.2 0.2 0.045 13.7 0.1 2.5 2 1 0 2 2 2 2 RsgA GTPase RBD-FIP PF09457.10 gi|433589605|ref|YP_007279101.1| - 0.00023 21.0 0.5 0.00046 20.0 0.5 1.4 1 0 0 1 1 1 1 FIP domain Dynamin_N PF00350.23 gi|433589605|ref|YP_007279101.1| - 0.0015 18.7 0.1 0.038 14.1 0.1 2.2 1 1 1 2 2 2 1 Dynamin family ABC_tran PF00005.27 gi|433589605|ref|YP_007279101.1| - 0.0036 17.8 0.0 0.0041 17.6 0.0 1.4 1 1 0 1 1 1 1 ABC transporter Roc PF08477.13 gi|433589605|ref|YP_007279101.1| - 0.0088 16.3 0.1 0.026 14.7 0.0 1.8 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|433589605|ref|YP_007279101.1| - 0.009 15.8 1.8 0.17 11.6 0.1 2.5 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein AIG1 PF04548.16 gi|433589605|ref|YP_007279101.1| - 0.011 15.0 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 AIG1 family AAA_18 PF13238.6 gi|433589605|ref|YP_007279101.1| - 0.025 15.1 0.0 0.039 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|433589605|ref|YP_007279101.1| - 0.037 14.3 0.2 0.36 11.1 0.1 2.5 1 1 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|433589605|ref|YP_007279101.1| - 0.071 12.1 0.2 10 5.0 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ras PF00071.22 gi|433589605|ref|YP_007279101.1| - 0.078 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Ras family AAA_16 PF13191.6 gi|433589605|ref|YP_007279101.1| - 0.12 12.8 0.1 0.37 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|433589605|ref|YP_007279101.1| - 0.13 12.0 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3113 PF11310.8 gi|433589605|ref|YP_007279101.1| - 0.72 9.8 3.8 0.37 10.8 0.5 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3113) LysE PF01810.18 gi|433589606|ref|YP_007279102.1| - 0.0018 17.7 0.3 0.0018 17.7 0.3 2.0 2 0 0 2 2 2 1 LysE type translocator CbbQ_C PF08406.10 gi|433589606|ref|YP_007279102.1| - 0.097 12.9 0.4 0.18 12.1 0.1 1.6 2 0 0 2 2 2 0 CbbQ/NirQ/NorQ C-terminal DUF389 PF04087.14 gi|433589607|ref|YP_007279103.1| - 2.3e-32 112.0 19.5 2.3e-32 112.0 19.5 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF3290 PF11694.8 gi|433589607|ref|YP_007279103.1| - 0.14 12.1 1.1 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) Peptidase_M64 PF09471.10 gi|433589607|ref|YP_007279103.1| - 0.23 11.0 0.1 0.53 9.8 0.1 1.5 2 0 0 2 2 2 0 IgA Peptidase M64 DUF2207 PF09972.9 gi|433589607|ref|YP_007279103.1| - 0.59 8.8 5.3 1.8 7.2 0.0 2.6 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) Herpes_US9 PF06072.11 gi|433589607|ref|YP_007279103.1| - 1.5 8.7 4.1 1.7 8.6 0.1 2.7 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 NosL PF05573.12 gi|433589608|ref|YP_007279104.1| - 0.068 13.5 0.6 0.079 13.3 0.6 1.1 1 0 0 1 1 1 0 NosL Phage_tail_L PF05100.12 gi|433589608|ref|YP_007279104.1| - 0.19 11.0 3.3 0.22 10.8 3.3 1.1 1 0 0 1 1 1 0 Phage minor tail protein L NOG1_N PF17835.1 gi|433589609|ref|YP_007279105.1| - 1.8e-42 145.0 0.1 3e-42 144.3 0.1 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|433589609|ref|YP_007279105.1| - 5.2e-22 77.4 0.0 1.1e-21 76.3 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|433589609|ref|YP_007279105.1| - 2.2e-18 66.4 0.0 4.3e-18 65.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|433589609|ref|YP_007279105.1| - 5.5e-09 35.7 0.0 9.8e-09 34.9 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|433589609|ref|YP_007279105.1| - 0.0032 17.5 1.6 2 8.4 0.0 3.0 2 1 0 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 gi|433589609|ref|YP_007279105.1| - 0.0041 17.0 0.0 0.02 14.8 0.0 2.1 2 1 0 2 2 2 1 RsgA GTPase APP_E2 PF12925.7 gi|433589609|ref|YP_007279105.1| - 0.0047 16.7 0.1 0.0075 16.0 0.1 1.4 1 0 0 1 1 1 1 E2 domain of amyloid precursor protein AIG1 PF04548.16 gi|433589609|ref|YP_007279105.1| - 0.015 14.6 0.0 0.032 13.6 0.0 1.5 2 0 0 2 2 2 0 AIG1 family OKR_DC_1_N PF03709.15 gi|433589609|ref|YP_007279105.1| - 0.029 14.6 0.0 0.07 13.4 0.0 1.6 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain DUF3584 PF12128.8 gi|433589609|ref|YP_007279105.1| - 0.077 10.5 0.5 2 5.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) AAA_16 PF13191.6 gi|433589609|ref|YP_007279105.1| - 0.098 13.0 0.3 1.8 8.9 0.0 2.4 1 1 1 2 2 2 0 AAA ATPase domain DUF5518 PF17647.1 gi|433589610|ref|YP_007279106.1| - 3.3e-14 53.0 49.1 3.7e-14 52.9 49.1 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Ldr_toxin PF13940.6 gi|433589610|ref|YP_007279106.1| - 0.19 11.8 5.6 0.19 11.8 0.3 3.0 2 1 0 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system DUF326 PF03860.16 gi|433589611|ref|YP_007279107.1| - 1.3e-07 31.4 50.9 0.0018 18.2 7.9 4.7 4 1 0 4 4 4 4 Domain of Unknown Function (DUF326) PRA-PH PF01503.17 gi|433589612|ref|YP_007279108.1| - 1.3e-16 60.8 4.5 1.5e-16 60.6 4.5 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|433589612|ref|YP_007279108.1| - 0.0013 18.9 4.1 0.0013 18.9 4.1 1.8 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain DNase-RNase PF02577.14 gi|433589613|ref|YP_007279109.1| - 2.1e-36 124.4 0.0 2.3e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease SNO PF01174.19 gi|433589614|ref|YP_007279110.1| - 8.9e-48 162.6 0.0 1.1e-47 162.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|433589614|ref|YP_007279110.1| - 1.7e-09 37.5 0.0 2.8e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|433589614|ref|YP_007279110.1| - 0.0004 20.1 0.0 0.00054 19.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 BPL_N PF09825.9 gi|433589614|ref|YP_007279110.1| - 0.0055 15.8 0.0 0.036 13.2 0.0 2.0 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal DJ-1_PfpI PF01965.24 gi|433589614|ref|YP_007279110.1| - 0.015 15.1 0.1 0.024 14.5 0.1 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family GATase PF00117.28 gi|433589614|ref|YP_007279110.1| - 0.059 13.1 0.0 2.9 7.6 0.0 2.0 2 0 0 2 2 2 0 Glutamine amidotransferase class-I DUF4177 PF13783.6 gi|433589615|ref|YP_007279111.1| - 1.4e-08 34.9 0.1 1.9e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DUF2761 PF10959.8 gi|433589615|ref|YP_007279111.1| - 0.056 13.4 0.0 0.071 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2761) Sec61_beta PF03911.16 gi|433589617|ref|YP_007279113.1| - 1.6e-17 63.2 0.2 1.9e-17 63.0 0.2 1.1 1 0 0 1 1 1 1 Sec61beta family Thioredoxin PF00085.20 gi|433589618|ref|YP_007279114.1| - 2.5e-21 75.6 0.0 3e-21 75.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|433589618|ref|YP_007279114.1| - 1.5e-07 31.8 0.2 5.7e-07 30.0 0.2 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|433589618|ref|YP_007279114.1| - 5.3e-06 26.7 0.1 0.00085 19.6 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like TraF PF13728.6 gi|433589618|ref|YP_007279114.1| - 5.4e-05 23.1 0.0 5.8e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|433589618|ref|YP_007279114.1| - 0.00037 20.3 0.0 0.00047 19.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|433589618|ref|YP_007279114.1| - 0.00045 20.2 0.0 0.00054 19.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.14 gi|433589618|ref|YP_007279114.1| - 0.0013 19.1 0.1 0.0015 18.9 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Redoxin PF08534.10 gi|433589618|ref|YP_007279114.1| - 0.0018 18.0 0.4 0.084 12.6 0.1 2.0 1 1 1 2 2 2 2 Redoxin AhpC-TSA PF00578.21 gi|433589618|ref|YP_007279114.1| - 0.0019 18.1 0.2 0.0072 16.2 0.2 1.6 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_5 PF13743.6 gi|433589618|ref|YP_007279114.1| - 0.0032 17.2 0.1 0.0037 17.0 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|433589618|ref|YP_007279114.1| - 0.015 15.5 0.2 0.027 14.7 0.1 1.5 1 1 1 2 2 2 0 Glutaredoxin DSBA PF01323.20 gi|433589618|ref|YP_007279114.1| - 0.022 14.6 0.2 0.15 11.8 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain KaiB PF07689.12 gi|433589618|ref|YP_007279114.1| - 0.046 13.5 0.0 0.052 13.3 0.0 1.1 1 0 0 1 1 1 0 KaiB domain DDE_5 PF13546.6 gi|433589619|ref|YP_007279115.1| - 8.6e-27 94.2 0.0 1.4e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|433589619|ref|YP_007279115.1| - 2.5e-12 46.9 0.0 3.8e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433589619|ref|YP_007279115.1| - 0.00016 21.0 0.0 0.00069 18.9 0.0 1.9 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 F420_oxidored PF03807.17 gi|433589620|ref|YP_007279116.1| - 5.3e-20 71.8 0.0 1.1e-19 70.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|433589620|ref|YP_007279116.1| - 1.1e-05 25.7 0.1 0.00013 22.3 0.0 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|433589620|ref|YP_007279116.1| - 0.00063 20.2 0.0 0.0021 18.5 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain PDH PF02153.17 gi|433589620|ref|YP_007279116.1| - 0.0055 15.8 0.0 0.0085 15.1 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|433589620|ref|YP_007279116.1| - 0.0059 16.6 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KR PF08659.10 gi|433589620|ref|YP_007279116.1| - 0.019 14.9 0.1 0.049 13.5 0.0 1.6 2 0 0 2 2 2 0 KR domain ApbA PF02558.16 gi|433589620|ref|YP_007279116.1| - 0.022 14.4 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 gi|433589620|ref|YP_007279116.1| - 0.028 14.3 0.1 0.049 13.5 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H-binding GFO_IDH_MocA PF01408.22 gi|433589620|ref|YP_007279116.1| - 0.05 14.4 0.0 0.16 12.8 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Shikimate_DH PF01488.20 gi|433589620|ref|YP_007279116.1| - 0.051 13.6 0.0 0.099 12.7 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Exotox-A_target PF09102.10 gi|433589620|ref|YP_007279116.1| - 0.071 13.1 1.7 0.089 12.8 0.1 1.8 2 0 0 2 2 2 0 Exotoxin A, targeting 3HCDH_N PF02737.18 gi|433589620|ref|YP_007279116.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 gi|433589620|ref|YP_007279116.1| - 0.16 12.7 0.4 16 6.2 0.0 2.4 2 1 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase GDPD PF03009.17 gi|433589622|ref|YP_007279118.1| - 3.7e-25 89.1 0.0 7.6e-25 88.1 0.0 1.5 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family STAG PF08514.11 gi|433589623|ref|YP_007279119.1| - 0.026 14.5 0.2 0.026 14.5 0.2 1.2 1 0 0 1 1 1 0 STAG domain U62_UL91 PF17442.2 gi|433589623|ref|YP_007279119.1| - 0.087 12.8 0.1 0.087 12.8 0.1 1.2 1 0 0 1 1 1 0 Functional domain of U62 and UL91 proteins COX1 PF00115.20 gi|433589624|ref|YP_007279120.1| - 7.5e-125 417.2 75.7 7.5e-125 417.2 75.7 2.4 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|433589624|ref|YP_007279120.1| - 3e-17 63.3 17.8 3e-17 63.3 17.8 3.5 4 2 0 4 4 4 1 Cytochrome c oxidase subunit III PemK_toxin PF02452.17 gi|433589625|ref|YP_007279121.1| - 0.0024 18.3 0.0 0.0024 18.3 0.0 1.2 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_Crp_2 PF13545.6 gi|433589626|ref|YP_007279122.1| - 0.0054 16.7 0.0 0.0071 16.3 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|433589626|ref|YP_007279122.1| - 0.039 13.9 0.0 0.05 13.5 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) GntR PF00392.21 gi|433589626|ref|YP_007279122.1| - 0.072 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|433589626|ref|YP_007279122.1| - 0.083 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|433589626|ref|YP_007279122.1| - 0.13 12.4 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain NIF3 PF01784.18 gi|433589627|ref|YP_007279123.1| - 7.1e-54 183.0 0.0 8.2e-54 182.8 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Got1 PF04178.12 gi|433589628|ref|YP_007279124.1| - 0.041 14.3 1.7 0.051 14.0 1.7 1.1 1 0 0 1 1 1 0 Got1/Sft2-like family DUF4418 PF14387.6 gi|433589628|ref|YP_007279124.1| - 0.19 12.0 1.5 0.27 11.5 0.9 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) DS PF01916.17 gi|433589629|ref|YP_007279125.1| - 3.4e-98 328.5 0.0 3.9e-98 328.2 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Putative_PNPOx PF01243.20 gi|433589630|ref|YP_007279126.1| - 4.8e-15 55.5 0.0 6.9e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|433589630|ref|YP_007279126.1| - 9.1e-12 45.2 0.3 1.1e-11 44.9 0.3 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|433589630|ref|YP_007279126.1| - 0.02 14.5 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like PaaA_PaaC PF05138.12 gi|433589630|ref|YP_007279126.1| - 0.037 13.2 0.1 0.049 12.8 0.1 1.1 1 0 0 1 1 1 0 Phenylacetic acid catabolic protein PAS_4 PF08448.10 gi|433589631|ref|YP_007279127.1| - 4.5e-22 78.4 7.6 2.2e-13 50.4 0.4 3.4 3 0 0 3 3 2 2 PAS fold PAS PF00989.25 gi|433589631|ref|YP_007279127.1| - 7.6e-18 64.6 0.0 2.8e-08 33.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|433589631|ref|YP_007279127.1| - 1e-16 61.4 0.0 4.1e-16 59.5 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|433589631|ref|YP_007279127.1| - 1.2e-15 57.6 0.0 3.5e-08 33.6 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|433589631|ref|YP_007279127.1| - 1e-13 50.9 0.1 1.2e-06 28.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|433589631|ref|YP_007279127.1| - 6e-10 39.0 3.6 1.2e-09 38.1 0.5 3.1 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|433589631|ref|YP_007279127.1| - 9.5e-08 32.4 2.5 8.9e-06 26.0 0.0 3.6 3 1 0 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|433589631|ref|YP_007279127.1| - 3.8e-06 27.3 0.0 1.1e-05 25.7 0.0 1.9 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.12 gi|433589631|ref|YP_007279127.1| - 6.2e-06 26.4 0.1 0.0031 17.8 0.0 2.6 2 0 0 2 2 2 1 PAS fold GAF PF01590.26 gi|433589631|ref|YP_007279127.1| - 0.00021 21.9 0.0 0.0005 20.7 0.0 1.6 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.15 gi|433589631|ref|YP_007279127.1| - 0.00037 20.7 0.1 0.0009 19.5 0.1 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.7 gi|433589631|ref|YP_007279127.1| - 0.00083 19.5 0.1 0.015 15.5 0.0 2.9 3 1 0 3 3 3 1 PAS fold Response_reg PF00072.24 gi|433589631|ref|YP_007279127.1| - 0.0012 19.0 0.0 0.0027 17.8 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain 7TMR-HDED PF07697.11 gi|433589631|ref|YP_007279127.1| - 0.032 14.3 0.2 0.11 12.5 0.1 2.0 2 0 0 2 2 2 0 7TM-HD extracellular PAS_10 PF13596.6 gi|433589631|ref|YP_007279127.1| - 0.033 14.8 0.0 0.16 12.6 0.0 2.0 2 0 0 2 2 2 0 PAS domain HATPase_c_2 PF13581.6 gi|433589631|ref|YP_007279127.1| - 0.043 13.8 0.1 0.13 12.2 0.1 1.9 1 1 0 1 1 1 0 Histidine kinase-like ATPase domain MEKHLA PF08670.11 gi|433589631|ref|YP_007279127.1| - 0.11 12.4 0.0 2.8 7.8 0.0 2.6 2 0 0 2 2 2 0 MEKHLA domain Glycos_transf_2 PF00535.26 gi|433589632|ref|YP_007279128.1| - 1e-24 87.3 0.0 1.4e-24 86.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|433589632|ref|YP_007279128.1| - 9.1e-10 38.8 0.0 1.2e-09 38.4 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|433589632|ref|YP_007279128.1| - 6e-08 32.5 0.0 5.3e-07 29.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|433589632|ref|YP_007279128.1| - 2.5e-07 30.3 0.0 3.6e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|433589632|ref|YP_007279128.1| - 1.6e-05 25.4 0.8 8.9e-05 22.9 0.3 2.5 3 1 0 3 3 3 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|433589632|ref|YP_007279128.1| - 0.00057 19.9 0.0 0.0012 18.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.6 gi|433589632|ref|YP_007279128.1| - 0.13 11.9 0.0 0.28 10.8 0.0 1.5 1 1 1 2 2 2 0 Glycosyltransferase like family DDE_Tnp_IS240 PF13610.6 gi|433589634|ref|YP_007279130.1| - 1.3e-14 54.6 0.1 1.8e-14 54.1 0.1 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.14 gi|433589634|ref|YP_007279130.1| - 9.7e-06 25.3 0.0 3e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.6 gi|433589634|ref|YP_007279130.1| - 0.0036 17.1 0.0 0.03 14.1 0.0 2.1 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|433589634|ref|YP_007279130.1| - 0.062 12.9 3.0 0.36 10.4 0.5 2.3 1 1 1 2 2 2 0 Transposase DDE domain rve PF00665.26 gi|433589634|ref|YP_007279130.1| - 0.13 12.5 0.2 0.36 11.0 0.2 1.7 1 1 0 1 1 1 0 Integrase core domain DDE_Tnp_1 PF01609.21 gi|433589636|ref|YP_007279132.1| - 4.4e-27 95.1 0.0 6.1e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433589636|ref|YP_007279132.1| - 0.0015 17.9 0.1 0.0022 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|433589636|ref|YP_007279132.1| - 0.11 10.7 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DUF4781 PF16013.5 gi|433589637|ref|YP_007279133.1| - 0.077 11.8 0.5 0.083 11.7 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) DUF389 PF04087.14 gi|433589638|ref|YP_007279134.1| - 2.8e-24 85.8 18.9 2.8e-24 85.8 18.9 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF389) Ion_trans PF00520.31 gi|433589639|ref|YP_007279135.1| - 0.99 8.6 7.4 1.6 7.9 7.4 1.4 1 1 0 1 1 1 0 Ion transport protein CBAH PF02275.18 gi|433589640|ref|YP_007279136.1| - 1.8e-48 165.8 0.0 4.2e-47 161.3 0.0 2.0 1 1 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family AAT PF03417.16 gi|433589640|ref|YP_007279136.1| - 0.022 14.5 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase ADH_N PF08240.12 gi|433589641|ref|YP_007279137.1| - 3.6e-28 97.6 0.1 6.2e-28 96.8 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|433589641|ref|YP_007279137.1| - 7.7e-19 68.0 0.1 7.2e-13 48.6 0.0 2.3 1 1 1 2 2 2 2 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 gi|433589641|ref|YP_007279137.1| - 2.2e-10 40.2 0.0 4.8e-10 39.2 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Methyltransf_25 PF13649.6 gi|433589641|ref|YP_007279137.1| - 0.006 17.3 0.1 0.021 15.5 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433589641|ref|YP_007279137.1| - 0.0084 16.7 0.0 0.064 13.9 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433589641|ref|YP_007279137.1| - 0.0098 15.7 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain 2-Hacid_dh_C PF02826.19 gi|433589641|ref|YP_007279137.1| - 0.18 11.1 0.0 0.38 10.1 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Polyketide_cyc2 PF10604.9 gi|433589642|ref|YP_007279138.1| - 1.8e-11 44.5 4.8 2.9e-11 43.8 4.8 1.4 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|433589642|ref|YP_007279138.1| - 7.5e-10 39.1 0.2 1.5e-09 38.1 0.2 1.5 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|433589642|ref|YP_007279138.1| - 8.3e-06 26.0 0.1 1.4e-05 25.4 0.1 1.3 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Ion_trans PF00520.31 gi|433589643|ref|YP_007279139.1| - 2.5e-18 66.2 5.7 3.3e-18 65.8 5.7 1.1 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|433589643|ref|YP_007279139.1| - 2.1e-17 62.8 6.5 6.3e-17 61.3 3.4 2.4 2 0 0 2 2 2 1 Ion channel zf-ribbon_3 PF13248.6 gi|433589643|ref|YP_007279139.1| - 6.3e-05 22.2 2.2 0.0001 21.5 2.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain PKD_channel PF08016.12 gi|433589643|ref|YP_007279139.1| - 0.013 14.2 3.8 0.02 13.6 3.8 1.2 1 0 0 1 1 1 0 Polycystin cation channel DZR PF12773.7 gi|433589643|ref|YP_007279139.1| - 0.034 14.2 0.3 0.054 13.5 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|433589643|ref|YP_007279139.1| - 0.089 12.3 1.5 0.66 9.5 1.6 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding Ac76 PF05814.11 gi|433589643|ref|YP_007279139.1| - 0.097 12.7 0.5 4.3 7.4 0.0 2.4 2 0 0 2 2 2 0 Orf76 (Ac76) Ribosomal_L37e PF01907.19 gi|433589643|ref|YP_007279139.1| - 0.24 11.6 1.9 0.4 10.9 1.9 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e zf-ACC PF17848.1 gi|433589643|ref|YP_007279139.1| - 0.33 11.1 2.7 3.1 8.0 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_4 PF13717.6 gi|433589643|ref|YP_007279139.1| - 0.44 10.5 2.1 24 4.9 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|433589643|ref|YP_007279139.1| - 0.46 10.3 2.8 0.37 10.6 1.2 1.7 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|433589643|ref|YP_007279139.1| - 0.73 9.8 2.6 3.9 7.5 0.8 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF35_N PF12172.8 gi|433589643|ref|YP_007279139.1| - 1.1 9.2 3.7 2.1 8.3 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|433589643|ref|YP_007279139.1| - 1.7 8.8 4.6 18 5.5 0.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|433589643|ref|YP_007279139.1| - 5 7.1 6.0 2.4 8.1 1.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal DAO PF01266.24 gi|433589644|ref|YP_007279140.1| - 5.2e-29 101.9 0.0 7.1e-29 101.5 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Mqo PF06039.15 gi|433589644|ref|YP_007279140.1| - 7.1e-24 84.2 0.0 2e-22 79.4 0.0 2.0 1 1 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) Pyr_redox_2 PF07992.14 gi|433589644|ref|YP_007279140.1| - 5.3e-07 29.1 0.0 0.0036 16.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|433589644|ref|YP_007279140.1| - 2e-05 24.0 0.2 0.00069 19.0 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|433589644|ref|YP_007279140.1| - 0.00012 22.1 0.2 0.038 14.0 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|433589644|ref|YP_007279140.1| - 0.0025 16.6 0.2 0.013 14.2 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|433589644|ref|YP_007279140.1| - 0.0045 16.1 0.0 0.0059 15.7 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|433589644|ref|YP_007279140.1| - 0.021 15.0 0.3 0.11 12.7 0.0 2.4 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|433589644|ref|YP_007279140.1| - 0.056 12.7 0.0 0.083 12.2 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|433589644|ref|YP_007279140.1| - 0.061 13.9 0.3 20 5.8 0.0 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Putative_PNPOx PF01243.20 gi|433589645|ref|YP_007279141.1| - 5.3e-06 26.5 0.0 8.1e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|433589645|ref|YP_007279141.1| - 0.00039 20.4 0.1 0.00061 19.8 0.1 1.3 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase GMC_oxred_N PF00732.19 gi|433589646|ref|YP_007279142.1| - 2.3e-89 299.7 0.0 2.8e-89 299.4 0.0 1.1 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_C PF05199.13 gi|433589646|ref|YP_007279142.1| - 1.2e-44 152.4 0.0 1.9e-44 151.7 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase Pyr_redox_2 PF07992.14 gi|433589646|ref|YP_007279142.1| - 2.2e-05 23.8 0.0 0.00038 19.8 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|433589646|ref|YP_007279142.1| - 6.7e-05 23.0 0.2 0.00025 21.2 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|433589646|ref|YP_007279142.1| - 0.0001 21.5 0.1 0.00015 20.9 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|433589646|ref|YP_007279142.1| - 0.00017 20.8 0.1 0.013 14.6 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|433589646|ref|YP_007279142.1| - 0.0002 21.1 3.6 0.0018 17.9 0.0 2.8 3 1 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|433589646|ref|YP_007279142.1| - 0.0015 17.8 0.0 0.0024 17.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|433589646|ref|YP_007279142.1| - 0.0022 16.8 0.0 0.0032 16.2 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|433589646|ref|YP_007279142.1| - 0.0043 16.3 0.0 0.37 10.0 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|433589646|ref|YP_007279142.1| - 0.11 13.1 0.0 0.39 11.3 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AIM24 PF01987.17 gi|433589647|ref|YP_007279143.1| - 6.7e-26 91.3 0.1 7.8e-26 91.1 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Pea-VEAacid PF08111.11 gi|433589647|ref|YP_007279143.1| - 0.079 13.3 0.4 0.22 11.9 0.4 1.7 1 0 0 1 1 1 0 Pea-VEAacid family Na_Ca_ex PF01699.24 gi|433589648|ref|YP_007279144.1| - 1.5e-18 67.2 32.3 1.6e-10 41.1 10.2 2.6 3 0 0 3 3 3 2 Sodium/calcium exchanger protein Zip PF02535.22 gi|433589649|ref|YP_007279145.1| - 9.4e-05 21.8 0.6 0.00034 19.9 0.1 1.9 2 0 0 2 2 2 1 ZIP Zinc transporter DUF3270 PF11674.8 gi|433589649|ref|YP_007279145.1| - 0.12 12.6 2.4 0.26 11.5 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3270) SPC12 PF06645.13 gi|433589649|ref|YP_007279145.1| - 0.37 10.9 0.2 0.37 10.9 0.2 2.4 3 0 0 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) RseC_MucC PF04246.12 gi|433589649|ref|YP_007279145.1| - 7.2 6.6 5.6 4.1 7.4 0.4 2.6 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DUF2391 PF09622.10 gi|433589650|ref|YP_007279146.1| - 6.9e-05 22.3 3.8 0.0002 20.8 3.8 1.6 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) Claudin_3 PF06653.11 gi|433589650|ref|YP_007279146.1| - 0.012 15.6 0.2 0.03 14.2 0.0 1.5 1 1 0 1 1 1 0 Tight junction protein, Claudin-like zf-C2H2_8 PF15909.5 gi|433589651|ref|YP_007279147.1| - 0.075 13.3 0.0 0.19 12.0 0.0 1.7 2 0 0 2 2 2 0 C2H2-type zinc ribbon DDE_Tnp_1 PF01609.21 gi|433589652|ref|YP_007279148.1| - 9.3e-17 61.4 0.0 1.4e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain Acetyltransf_1 PF00583.25 gi|433589653|ref|YP_007279149.1| - 3.2e-17 62.8 0.0 3.8e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|433589653|ref|YP_007279149.1| - 3.8e-13 49.5 0.0 5.3e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433589653|ref|YP_007279149.1| - 4.9e-09 36.0 0.0 4.1e-08 33.1 0.0 2.0 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|433589653|ref|YP_007279149.1| - 6.9e-09 36.0 0.0 1.1e-08 35.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|433589653|ref|YP_007279149.1| - 1.5e-07 32.2 0.0 1.6e-07 32.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|433589653|ref|YP_007279149.1| - 0.00012 22.2 0.0 0.00022 21.3 0.0 1.6 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|433589653|ref|YP_007279149.1| - 0.0021 18.1 0.0 0.0063 16.6 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|433589653|ref|YP_007279149.1| - 0.013 15.7 0.0 0.014 15.6 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|433589653|ref|YP_007279149.1| - 0.044 13.9 0.0 0.067 13.3 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|433589653|ref|YP_007279149.1| - 0.053 13.2 0.1 0.071 12.8 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|433589653|ref|YP_007279149.1| - 0.16 12.0 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Usp PF00582.26 gi|433589654|ref|YP_007279150.1| - 2.5e-17 63.7 0.1 3e-17 63.4 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|433589654|ref|YP_007279150.1| - 0.027 14.5 0.0 0.034 14.2 0.0 1.1 1 0 0 1 1 1 0 DNA photolyase B12-binding PF02310.19 gi|433589654|ref|YP_007279150.1| - 0.055 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain Uso1_p115_C PF04871.13 gi|433589654|ref|YP_007279150.1| - 0.17 12.3 1.9 0.38 11.1 1.9 1.5 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region AMP-binding PF00501.28 gi|433589655|ref|YP_007279151.1| - 2.2e-79 267.0 0.0 2.8e-79 266.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433589655|ref|YP_007279151.1| - 3.3e-22 79.3 3.4 6.3e-22 78.3 0.8 2.9 4 0 0 4 4 4 1 AMP-binding enzyme C-terminal domain Toast_rack_N PF17115.5 gi|433589656|ref|YP_007279152.1| - 0.06 13.7 1.3 0.067 13.5 1.3 1.1 1 0 0 1 1 1 0 N-terminal domain of toast_rack, DUF2154 DUF1947 PF09183.10 gi|433589656|ref|YP_007279152.1| - 0.23 11.8 0.6 0.23 11.8 0.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1947) Rieske PF00355.26 gi|433589657|ref|YP_007279153.1| - 8.9e-08 32.0 0.1 1.8e-07 31.0 0.1 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Hydrolase PF00702.26 gi|433589658|ref|YP_007279154.1| - 2.6e-10 41.0 0.4 5.7e-10 39.8 0.4 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|433589658|ref|YP_007279154.1| - 2.7e-06 27.6 0.0 6.2e-05 23.1 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433589658|ref|YP_007279154.1| - 0.00057 20.3 0.9 0.017 15.5 0.1 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433589658|ref|YP_007279154.1| - 0.0015 18.5 1.3 0.0015 18.5 1.3 2.5 2 1 0 2 2 2 1 HAD-hyrolase-like DUF3267 PF11667.8 gi|433589659|ref|YP_007279155.1| - 1.1e-06 28.9 0.1 1.1e-06 28.9 0.1 3.1 2 1 1 3 3 3 1 Putative zincin peptidase UPF0146 PF03686.13 gi|433589660|ref|YP_007279156.1| - 7.7e-32 109.9 0.1 8.8e-32 109.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Peptidase_M54 PF07998.11 gi|433589661|ref|YP_007279157.1| - 1e-21 77.8 0.0 1.3e-21 77.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_4 PF13583.6 gi|433589661|ref|YP_007279157.1| - 2.4e-05 24.1 0.1 3e-05 23.8 0.1 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.24 gi|433589661|ref|YP_007279157.1| - 0.00036 20.4 0.0 0.00038 20.3 0.0 1.3 1 0 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.6 gi|433589661|ref|YP_007279157.1| - 0.00037 20.5 0.0 0.00046 20.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|433589661|ref|YP_007279157.1| - 0.0006 20.0 0.0 0.00071 19.8 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.6 gi|433589661|ref|YP_007279157.1| - 0.00067 20.2 0.0 0.00087 19.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|433589661|ref|YP_007279157.1| - 0.0024 16.9 0.0 0.0032 16.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 DUF4953 PF16313.5 gi|433589661|ref|YP_007279157.1| - 0.022 14.0 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Met-zincin Peptidase_M57 PF12388.8 gi|433589661|ref|YP_007279157.1| - 0.1 12.2 0.1 0.27 10.8 0.0 1.7 2 0 0 2 2 2 0 Dual-action HEIGH metallo-peptidase Zincin_1 PF06262.11 gi|433589661|ref|YP_007279157.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Zincin-like metallopeptidase HZS_alpha PF18582.1 gi|433589662|ref|YP_007279158.1| - 0.03 14.8 0.7 0.047 14.2 0.7 1.4 1 0 0 1 1 1 0 Hydrazine synthase alpha subunit middle domain ABC_tran PF00005.27 gi|433589663|ref|YP_007279159.1| - 4.8e-40 137.2 0.0 3.4e-20 73.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|433589663|ref|YP_007279159.1| - 6.5e-14 51.9 6.1 8.9e-05 22.0 0.1 4.6 5 0 0 5 5 5 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|433589663|ref|YP_007279159.1| - 1.8e-11 43.7 1.8 3.5e-11 42.7 1.8 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|433589663|ref|YP_007279159.1| - 4.3e-11 43.2 2.4 0.11 12.3 0.2 4.2 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|433589663|ref|YP_007279159.1| - 6.2e-08 33.2 1.1 0.0022 18.4 0.0 3.4 2 1 1 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|433589663|ref|YP_007279159.1| - 9.2e-06 26.0 0.0 0.019 15.2 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|433589663|ref|YP_007279159.1| - 1.3e-05 25.8 0.0 0.14 12.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 gi|433589663|ref|YP_007279159.1| - 3e-05 24.5 0.0 0.13 12.6 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|433589663|ref|YP_007279159.1| - 8.9e-05 22.8 0.0 0.52 10.7 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Rad17 PF03215.15 gi|433589663|ref|YP_007279159.1| - 0.0001 22.3 0.0 0.18 11.7 0.0 2.8 2 1 1 3 3 3 1 Rad17 P-loop domain AAA_24 PF13479.6 gi|433589663|ref|YP_007279159.1| - 0.00018 21.3 0.9 0.12 12.1 0.2 2.4 2 1 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|433589663|ref|YP_007279159.1| - 0.00018 21.4 0.0 0.33 10.8 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_33 PF13671.6 gi|433589663|ref|YP_007279159.1| - 0.00026 21.2 0.5 0.17 12.0 0.0 3.1 3 1 0 3 3 3 1 AAA domain Fer4 PF00037.27 gi|433589663|ref|YP_007279159.1| - 0.00029 20.5 1.4 0.00029 20.5 1.4 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|433589663|ref|YP_007279159.1| - 0.00085 19.3 12.3 0.0068 16.4 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain NACHT PF05729.12 gi|433589663|ref|YP_007279159.1| - 0.0032 17.4 0.2 4.5 7.2 0.0 2.9 3 0 0 3 3 3 2 NACHT domain RuvB_N PF05496.12 gi|433589663|ref|YP_007279159.1| - 0.0035 17.1 0.1 1.6 8.5 0.0 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|433589663|ref|YP_007279159.1| - 0.0044 17.0 0.4 5.8 7.0 0.0 3.7 3 1 0 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|433589663|ref|YP_007279159.1| - 0.0049 16.6 0.4 3.7 7.4 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|433589663|ref|YP_007279159.1| - 0.0056 16.4 0.7 1.3 8.6 0.1 2.6 2 1 0 3 3 3 1 AAA ATPase domain AAA_18 PF13238.6 gi|433589663|ref|YP_007279159.1| - 0.009 16.6 0.0 7.7 7.1 0.0 2.8 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|433589663|ref|YP_007279159.1| - 0.012 15.2 3.0 6.2 6.3 0.1 3.6 4 0 0 4 4 4 0 AAA domain MMR_HSR1 PF01926.23 gi|433589663|ref|YP_007279159.1| - 0.015 15.3 0.3 0.53 10.4 0.2 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase Fer4_2 PF12797.7 gi|433589663|ref|YP_007279159.1| - 0.021 14.9 0.6 0.021 14.9 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_28 PF13521.6 gi|433589663|ref|YP_007279159.1| - 0.026 14.7 0.5 3.6 7.8 0.0 3.3 3 0 0 3 3 3 0 AAA domain Fer4_7 PF12838.7 gi|433589663|ref|YP_007279159.1| - 0.027 15.1 10.7 0.056 14.0 10.7 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain NB-ARC PF00931.22 gi|433589663|ref|YP_007279159.1| - 0.048 12.8 0.2 2.6 7.1 0.2 2.6 2 1 0 2 2 2 0 NB-ARC domain Fer4_10 PF13237.6 gi|433589663|ref|YP_007279159.1| - 0.061 13.5 12.0 0.33 11.1 12.8 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_5 PF07728.14 gi|433589663|ref|YP_007279159.1| - 0.093 12.7 0.1 15 5.6 0.0 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|433589663|ref|YP_007279159.1| - 0.12 12.4 1.4 23 5.0 0.0 3.4 4 1 0 4 4 3 0 Helicase HerA, central domain AAA_30 PF13604.6 gi|433589663|ref|YP_007279159.1| - 0.18 11.5 1.0 8.5 6.0 0.0 2.8 3 0 0 3 3 3 0 AAA domain SRP54 PF00448.22 gi|433589663|ref|YP_007279159.1| - 0.23 11.1 1.6 5.8 6.5 0.0 2.5 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain Fer4_21 PF14697.6 gi|433589663|ref|YP_007279159.1| - 0.41 10.8 8.7 0.72 10.0 8.7 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433589663|ref|YP_007279159.1| - 0.83 9.9 10.9 1.7 8.9 10.9 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|433589663|ref|YP_007279159.1| - 1.1 9.1 5.1 19 5.1 0.1 3.2 4 0 0 4 4 3 0 NTPase Fer4_16 PF13484.6 gi|433589663|ref|YP_007279159.1| - 4.4 8.3 10.5 12 6.9 10.5 1.8 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|433589663|ref|YP_007279159.1| - 7.6 7.3 6.9 31 5.4 6.9 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF2391 PF09622.10 gi|433589664|ref|YP_007279160.1| - 0.0035 16.7 1.0 0.0038 16.6 1.0 1.0 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) Maff2 PF12750.7 gi|433589664|ref|YP_007279160.1| - 0.041 13.7 1.3 0.056 13.3 0.2 1.8 1 1 1 2 2 2 0 Maff2 family Bactofilin PF04519.13 gi|433589665|ref|YP_007279161.1| - 3.7e-05 24.0 24.1 0.0012 19.0 4.8 4.6 3 1 2 5 5 5 3 Polymer-forming cytoskeletal DUF1307 PF06998.11 gi|433589665|ref|YP_007279161.1| - 0.027 14.5 2.1 0.028 14.4 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1307) DUF1428 PF07237.11 gi|433589665|ref|YP_007279161.1| - 0.089 13.1 0.1 12 6.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1428) DUF3494 PF11999.8 gi|433589665|ref|YP_007279161.1| - 0.16 11.6 16.4 0.077 12.6 5.5 4.1 1 1 0 3 3 3 0 Protein of unknown function (DUF3494) Gp_dh_N PF00044.24 gi|433589667|ref|YP_007279163.1| - 0.079 13.3 0.1 0.55 10.6 0.1 2.1 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DUF4114 PF13448.6 gi|433589668|ref|YP_007279164.1| - 0.09 13.6 0.9 0.09 13.6 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4114) DDE_Tnp_1 PF01609.21 gi|433589669|ref|YP_007279165.1| - 4.4e-27 95.1 0.0 6.1e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433589669|ref|YP_007279165.1| - 0.0015 17.9 0.1 0.0022 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|433589669|ref|YP_007279165.1| - 0.11 10.7 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 fn3 PF00041.21 gi|433589670|ref|YP_007279166.1| - 0.045 14.1 0.5 14 6.2 0.1 3.4 3 0 0 3 3 3 0 Fibronectin type III domain Fn3-like PF14310.6 gi|433589670|ref|YP_007279166.1| - 0.059 13.5 0.4 3.2 7.9 0.1 3.4 2 2 0 2 2 2 0 Fibronectin type III-like domain Pur_ac_phosph_N PF16656.5 gi|433589670|ref|YP_007279166.1| - 0.18 12.4 8.6 0.23 12.0 2.0 3.3 2 2 0 2 2 2 0 Purple acid Phosphatase, N-terminal domain SusE PF14292.6 gi|433589670|ref|YP_007279166.1| - 1.5 9.1 13.1 0.36 11.1 0.5 3.5 2 2 2 4 4 4 0 SusE outer membrane protein CBM_2 PF00553.19 gi|433589672|ref|YP_007279168.1| - 0.052 13.9 1.6 0.11 12.8 0.1 2.3 2 1 0 2 2 2 0 Cellulose binding domain CARDB PF07705.11 gi|433589674|ref|YP_007279170.1| - 1.4e-11 44.5 13.3 2.9e-05 24.3 0.2 3.6 4 0 0 4 4 4 3 CARDB ASH PF15780.5 gi|433589674|ref|YP_007279170.1| - 1.7e-05 25.0 1.7 1 9.6 0.0 3.5 3 0 0 3 3 3 2 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Big_3_5 PF16640.5 gi|433589674|ref|YP_007279170.1| - 0.00067 19.8 17.4 0.093 12.9 1.5 3.6 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 3) FixG_C PF11614.8 gi|433589674|ref|YP_007279170.1| - 0.0053 17.0 4.7 2.2 8.5 0.1 4.3 2 1 3 5 5 5 1 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF11 PF01345.18 gi|433589674|ref|YP_007279170.1| - 0.0058 16.9 5.4 0.019 15.3 1.6 3.4 2 1 1 3 3 3 1 Domain of unknown function DUF11 DUF916 PF06030.12 gi|433589674|ref|YP_007279170.1| - 0.012 15.7 0.3 11 6.2 0.2 3.3 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF916) fn3_5 PF06280.12 gi|433589674|ref|YP_007279170.1| - 0.12 13.1 10.2 17 6.1 0.1 4.5 2 2 2 4 4 4 0 Fn3-like domain DUF1480 PF07351.13 gi|433589674|ref|YP_007279170.1| - 0.13 12.6 0.0 0.48 10.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1480) CarboxypepD_reg PF13620.6 gi|433589674|ref|YP_007279170.1| - 2.5 8.4 16.5 0.63 10.4 1.7 4.9 3 3 0 4 4 4 0 Carboxypeptidase regulatory-like domain Glyco_hydro_2 PF00703.21 gi|433589674|ref|YP_007279170.1| - 4.3 8.1 7.2 10 6.9 2.2 3.0 2 1 1 3 3 3 0 Glycosyl hydrolases family 2 Peptidase_S24 PF00717.23 gi|433589675|ref|YP_007279171.1| - 2.5e-06 27.4 0.0 4.5e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like UL45 PF05473.12 gi|433589675|ref|YP_007279171.1| - 0.061 12.9 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 UL45 protein, carbohydrate-binding C-type lectin-like CbtB PF09489.10 gi|433589675|ref|YP_007279171.1| - 0.12 12.5 0.2 0.12 12.5 0.2 3.8 5 0 0 5 5 5 0 Probable cobalt transporter subunit (CbtB) DUF5305 PF17231.2 gi|433589676|ref|YP_007279172.1| - 2.1e-55 187.5 0.2 1.6e-54 184.6 0.0 2.3 3 0 0 3 3 3 1 Family of unknown function (DUF5305) AMP-binding PF00501.28 gi|433589677|ref|YP_007279173.1| - 4.3e-96 322.1 0.2 5e-96 321.9 0.2 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433589677|ref|YP_007279173.1| - 5.9e-19 68.8 0.1 1.2e-18 67.9 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_24 PF13412.6 gi|433589678|ref|YP_007279174.1| - 2.9e-06 26.7 0.0 4.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433589678|ref|YP_007279174.1| - 0.00072 19.4 0.0 0.00081 19.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|433589678|ref|YP_007279174.1| - 0.00086 19.2 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|433589678|ref|YP_007279174.1| - 0.0011 18.6 0.1 0.0019 17.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|433589678|ref|YP_007279174.1| - 0.0018 18.1 0.0 0.0024 17.8 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433589678|ref|YP_007279174.1| - 0.0025 17.7 0.1 0.0033 17.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|433589678|ref|YP_007279174.1| - 0.0032 17.9 0.0 0.0045 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|433589678|ref|YP_007279174.1| - 0.016 15.0 0.1 0.02 14.8 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_28 PF13518.6 gi|433589678|ref|YP_007279174.1| - 0.02 15.0 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|433589678|ref|YP_007279174.1| - 0.024 14.6 0.0 0.63 10.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433589678|ref|YP_007279174.1| - 0.024 14.4 0.0 0.054 13.3 0.0 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|433589678|ref|YP_007279174.1| - 0.027 14.5 0.0 0.04 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|433589678|ref|YP_007279174.1| - 0.034 14.1 0.1 0.09 12.7 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain PaaX PF07848.12 gi|433589678|ref|YP_007279174.1| - 0.037 14.2 0.0 0.054 13.7 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein HTH_5 PF01022.20 gi|433589678|ref|YP_007279174.1| - 0.047 13.6 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|433589678|ref|YP_007279174.1| - 0.18 11.8 0.0 0.21 11.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF4131 PF13567.6 gi|433589679|ref|YP_007279175.1| - 0.014 15.0 4.6 0.17 11.5 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF4199 PF13858.6 gi|433589679|ref|YP_007279175.1| - 0.074 13.5 1.9 0.14 12.6 1.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) NAD_synthase PF02540.17 gi|433589680|ref|YP_007279176.1| - 5.7e-69 231.9 0.0 6.8e-69 231.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|433589680|ref|YP_007279176.1| - 4.2e-07 29.1 0.0 0.00058 18.8 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|433589680|ref|YP_007279176.1| - 0.00029 20.4 0.0 0.0012 18.4 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|433589680|ref|YP_007279176.1| - 0.17 11.5 0.1 0.27 10.8 0.1 1.3 1 0 0 1 1 1 0 Asparagine synthase FtsX PF02687.21 gi|433589681|ref|YP_007279177.1| - 0.43 11.1 6.3 2.4 8.7 1.3 2.3 2 0 0 2 2 2 0 FtsX-like permease family DUF3188 PF11384.8 gi|433589681|ref|YP_007279177.1| - 0.48 10.2 0.1 0.48 10.2 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) Bac_rhodopsin PF01036.18 gi|433589682|ref|YP_007279178.1| - 1.4e-65 221.0 20.4 1.6e-65 220.8 20.4 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF21 PF01595.20 gi|433589682|ref|YP_007279178.1| - 0.0055 16.4 2.9 0.0055 16.4 2.9 2.1 3 0 0 3 3 3 1 Cyclin M transmembrane N-terminal domain DUF5381 PF17353.2 gi|433589682|ref|YP_007279178.1| - 0.43 10.3 5.7 0.63 9.8 1.0 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5381) DUF4131 PF13567.6 gi|433589682|ref|YP_007279178.1| - 4.7 6.8 9.6 21 4.7 0.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) BCD PF15461.6 gi|433589684|ref|YP_007279180.1| - 2.7e-85 286.1 21.9 3.5e-85 285.7 21.9 1.1 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase HEAT_EZ PF13513.6 gi|433589684|ref|YP_007279180.1| - 1 9.9 7.3 0.53 10.9 0.6 3.4 3 0 0 3 3 3 0 HEAT-like repeat PGF-CTERM PF18204.1 gi|433589684|ref|YP_007279180.1| - 8.7 6.5 12.3 16 5.6 4.3 4.6 3 0 0 3 3 3 0 PGF-CTERM motif T2SSE PF00437.20 gi|433589685|ref|YP_007279181.1| - 7.8e-12 44.8 0.0 1.3e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|433589685|ref|YP_007279181.1| - 0.00028 21.3 0.0 0.00072 20.0 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|433589685|ref|YP_007279181.1| - 0.00077 19.2 0.0 0.0019 17.9 0.0 1.6 1 1 0 1 1 1 1 Thymidylate kinase PIN PF01850.21 gi|433589685|ref|YP_007279181.1| - 0.00083 19.9 0.1 0.0022 18.5 0.1 1.8 1 0 0 1 1 1 1 PIN domain IstB_IS21 PF01695.17 gi|433589685|ref|YP_007279181.1| - 0.005 16.6 0.0 0.0089 15.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein KH_1 PF00013.29 gi|433589685|ref|YP_007279181.1| - 0.0055 16.5 0.1 0.016 15.0 0.1 1.8 1 0 0 1 1 1 1 KH domain NTPase_1 PF03266.15 gi|433589685|ref|YP_007279181.1| - 0.0069 16.3 0.0 0.018 14.9 0.0 1.7 1 0 0 1 1 1 1 NTPase KH_2 PF07650.17 gi|433589685|ref|YP_007279181.1| - 0.0079 16.0 0.8 0.037 13.8 1.1 1.9 2 0 0 2 2 1 1 KH domain Zeta_toxin PF06414.12 gi|433589685|ref|YP_007279181.1| - 0.01 15.1 0.0 0.026 13.8 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.6 gi|433589685|ref|YP_007279181.1| - 0.012 15.3 1.8 0.018 14.6 0.2 2.1 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|433589685|ref|YP_007279181.1| - 0.013 15.7 0.1 0.11 12.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|433589685|ref|YP_007279181.1| - 0.014 14.9 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|433589685|ref|YP_007279181.1| - 0.014 15.9 0.5 0.034 14.7 0.0 2.0 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|433589685|ref|YP_007279181.1| - 0.014 15.1 0.1 0.038 13.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_29 PF13555.6 gi|433589685|ref|YP_007279181.1| - 0.017 14.8 0.0 0.048 13.4 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|433589685|ref|YP_007279181.1| - 0.024 14.6 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATPase PF06745.13 gi|433589685|ref|YP_007279181.1| - 0.025 13.9 0.0 0.082 12.2 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA PF00004.29 gi|433589685|ref|YP_007279181.1| - 0.025 15.0 0.0 0.058 13.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|433589685|ref|YP_007279181.1| - 0.027 14.7 0.0 0.16 12.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|433589685|ref|YP_007279181.1| - 0.028 14.4 0.0 0.059 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|433589685|ref|YP_007279181.1| - 0.039 13.5 0.0 0.066 12.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|433589685|ref|YP_007279181.1| - 0.042 14.2 0.0 0.084 13.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase KH_5 PF13184.6 gi|433589685|ref|YP_007279181.1| - 0.045 13.8 0.3 0.11 12.6 0.3 1.7 1 0 0 1 1 1 0 NusA-like KH domain TsaE PF02367.17 gi|433589685|ref|YP_007279181.1| - 0.071 13.1 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|433589685|ref|YP_007279181.1| - 0.088 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|433589685|ref|YP_007279181.1| - 0.089 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain APS_kinase PF01583.20 gi|433589685|ref|YP_007279181.1| - 0.093 12.6 0.0 0.24 11.3 0.0 1.7 2 0 0 2 2 1 0 Adenylylsulphate kinase Rad17 PF03215.15 gi|433589685|ref|YP_007279181.1| - 0.094 12.6 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain KH_4 PF13083.6 gi|433589685|ref|YP_007279181.1| - 0.12 12.3 0.7 0.56 10.1 0.5 2.4 2 0 0 2 2 1 0 KH domain Viral_helicase1 PF01443.18 gi|433589685|ref|YP_007279181.1| - 0.14 11.9 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Protoglobin PF11563.8 gi|433589686|ref|YP_007279182.1| - 2.2e-28 99.1 11.4 3.8e-27 95.1 0.3 3.9 4 1 0 4 4 4 2 Protoglobin MCPsignal PF00015.21 gi|433589686|ref|YP_007279182.1| - 5.2e-28 98.0 43.3 5.6e-25 88.1 21.4 3.7 1 1 3 4 4 4 4 Methyl-accepting chemotaxis protein (MCP) signalling domain BLOC1_2 PF10046.9 gi|433589686|ref|YP_007279182.1| - 0.0033 17.7 18.5 0.83 10.0 0.2 5.9 3 2 4 7 7 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|433589686|ref|YP_007279182.1| - 0.0035 17.6 27.8 0.26 11.6 3.9 5.1 1 1 4 5 5 5 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|433589686|ref|YP_007279182.1| - 0.0052 16.8 21.1 0.24 11.4 0.9 4.3 2 2 3 5 5 5 3 Protein of unknown function (DUF1664) CorA PF01544.18 gi|433589686|ref|YP_007279182.1| - 0.033 13.5 18.5 0.22 10.8 3.8 3.3 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein Mod_r PF07200.13 gi|433589686|ref|YP_007279182.1| - 0.065 13.3 0.1 0.065 13.3 0.1 4.0 2 2 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein IFT57 PF10498.9 gi|433589686|ref|YP_007279182.1| - 0.13 11.2 17.6 0.53 9.2 10.2 2.3 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Fib_alpha PF08702.10 gi|433589686|ref|YP_007279182.1| - 0.14 12.3 8.6 7.8 6.7 0.1 4.1 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family Sec34 PF04136.15 gi|433589686|ref|YP_007279182.1| - 0.25 11.2 12.1 18 5.2 0.0 4.5 2 2 1 4 4 4 0 Sec34-like family KxDL PF10241.9 gi|433589686|ref|YP_007279182.1| - 0.34 11.2 7.8 59 4.0 1.5 5.3 3 2 1 6 6 6 0 Uncharacterized conserved protein BORCS7 PF16088.5 gi|433589686|ref|YP_007279182.1| - 0.36 11.1 5.7 17 5.8 0.0 4.3 4 1 1 5 5 5 0 BLOC-1-related complex sub-unit 7 DUF16 PF01519.16 gi|433589686|ref|YP_007279182.1| - 0.43 11.1 12.8 1.4 9.5 1.0 4.6 2 2 3 5 5 5 0 Protein of unknown function DUF16 DUF4407 PF14362.6 gi|433589686|ref|YP_007279182.1| - 0.44 9.8 31.8 0.18 11.2 11.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) KorB PF08535.10 gi|433589686|ref|YP_007279182.1| - 0.5 10.4 3.7 2.2 8.3 0.2 3.7 2 2 2 4 4 4 0 KorB domain DASH_Dad2 PF08654.10 gi|433589686|ref|YP_007279182.1| - 0.54 10.7 13.1 29 5.2 0.0 4.6 3 2 0 3 3 3 0 DASH complex subunit Dad2 MitMem_reg PF13012.6 gi|433589686|ref|YP_007279182.1| - 0.58 10.6 9.0 1.3 9.5 0.7 3.6 2 1 0 3 3 3 0 Maintenance of mitochondrial structure and function Occludin_ELL PF07303.13 gi|433589686|ref|YP_007279182.1| - 0.72 10.6 4.6 12 6.6 0.0 4.4 3 2 1 5 5 4 0 Occludin homology domain AAA_13 PF13166.6 gi|433589686|ref|YP_007279182.1| - 1.1 7.8 22.8 1.2 7.7 11.1 2.1 1 1 1 2 2 2 0 AAA domain Baculo_PEP_C PF04513.12 gi|433589686|ref|YP_007279182.1| - 1.3 9.0 16.7 3 7.9 0.2 4.5 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus ISG65-75 PF11727.8 gi|433589686|ref|YP_007279182.1| - 2.6 7.2 30.1 3 7.0 10.9 3.4 1 1 2 3 3 3 0 Invariant surface glycoprotein HisKA PF00512.25 gi|433589686|ref|YP_007279182.1| - 2.7 8.1 14.8 0.85 9.7 1.1 5.3 5 1 0 5 5 5 0 His Kinase A (phospho-acceptor) domain NPV_P10 PF05531.12 gi|433589686|ref|YP_007279182.1| - 3.7 8.1 22.2 0.32 11.5 1.1 5.1 2 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein DASH_Dam1 PF08653.10 gi|433589686|ref|YP_007279182.1| - 4.6 7.1 4.4 33 4.4 0.0 4.3 5 1 2 7 7 6 0 DASH complex subunit Dam1 Syntaxin-6_N PF09177.11 gi|433589686|ref|YP_007279182.1| - 5.7 7.6 23.8 0.24 12.0 2.3 5.1 2 1 2 4 4 4 0 Syntaxin 6, N-terminal Synaptobrevin PF00957.21 gi|433589686|ref|YP_007279182.1| - 6.3 6.7 8.0 1.8 8.4 0.2 3.7 2 1 0 3 3 3 0 Synaptobrevin COG6 PF06419.11 gi|433589686|ref|YP_007279182.1| - 7.2 4.7 12.1 1.7 6.8 0.9 3.3 2 2 1 3 3 3 0 Conserved oligomeric complex COG6 Sipho_Gp157 PF05565.11 gi|433589686|ref|YP_007279182.1| - 8.2 6.4 17.7 1.9 8.5 4.1 3.6 2 2 1 3 3 3 0 Siphovirus Gp157 CCDC84 PF14968.6 gi|433589686|ref|YP_007279182.1| - 9.3 5.8 11.4 9.1 5.8 6.1 2.1 2 0 0 2 2 2 0 Coiled coil protein 84 Peptidase_M20 PF01546.28 gi|433589687|ref|YP_007279183.1| - 2.7e-28 99.1 3.2 4.3e-28 98.4 3.2 1.3 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|433589687|ref|YP_007279183.1| - 2.9e-16 59.3 0.2 6.2e-16 58.3 0.2 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|433589687|ref|YP_007279183.1| - 0.034 13.8 2.2 0.16 11.6 2.2 2.0 1 1 0 1 1 1 0 Peptidase family M28 Yip1 PF04893.17 gi|433589688|ref|YP_007279184.1| - 0.038 13.7 26.6 0.068 12.9 26.6 1.4 1 1 0 1 1 1 0 Yip1 domain DUF2953 PF11167.8 gi|433589688|ref|YP_007279184.1| - 0.078 13.1 1.0 0.21 11.7 1.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2953) Peptidase_M32 PF02074.15 gi|433589689|ref|YP_007279185.1| - 1.6e-177 591.2 0.0 1.8e-177 591.0 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase CBP4 PF07960.11 gi|433589689|ref|YP_007279185.1| - 0.11 12.3 0.1 0.25 11.2 0.1 1.5 1 0 0 1 1 1 0 CBP4 Pro_dh PF01619.18 gi|433589689|ref|YP_007279185.1| - 0.21 11.1 1.3 1.1 8.7 1.3 1.9 1 1 0 1 1 1 0 Proline dehydrogenase adh_short PF00106.25 gi|433589690|ref|YP_007279186.1| - 1.8e-52 177.6 0.0 2.5e-52 177.2 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|433589690|ref|YP_007279186.1| - 8e-42 143.4 0.6 9.9e-42 143.1 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|433589690|ref|YP_007279186.1| - 5.7e-15 55.7 0.2 8.7e-15 55.1 0.2 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|433589690|ref|YP_007279186.1| - 0.00022 21.2 3.8 0.00061 19.7 3.9 1.8 1 1 0 1 1 1 1 NAD(P)H-binding ADH_zinc_N PF00107.26 gi|433589690|ref|YP_007279186.1| - 0.00025 21.0 0.4 0.0029 17.6 0.4 2.1 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Epimerase PF01370.21 gi|433589690|ref|YP_007279186.1| - 0.00039 20.0 0.1 0.0011 18.5 0.1 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|433589690|ref|YP_007279186.1| - 0.0056 15.9 0.0 0.0068 15.6 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Peptidase_M48 PF01435.18 gi|433589692|ref|YP_007279188.1| - 1.4e-23 83.7 0.0 2.2e-23 83.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|433589692|ref|YP_007279188.1| - 0.043 13.0 0.0 0.12 11.6 0.0 1.7 2 0 0 2 2 2 0 BlaR1 peptidase M56 DUF4157 PF13699.6 gi|433589692|ref|YP_007279188.1| - 7.2 6.9 6.9 0.6 10.4 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4157) PseudoU_synth_1 PF01416.20 gi|433589693|ref|YP_007279189.1| - 8.7e-20 71.2 0.0 9.4e-14 51.8 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase YjcZ_2 PF09680.10 gi|433589694|ref|YP_007279190.1| - 0.71 9.6 7.3 1.6 8.4 7.3 1.6 1 1 0 1 1 1 0 Family of unknown function PQQ_2 PF13360.6 gi|433589695|ref|YP_007279191.1| - 3.7e-35 121.6 28.2 5.8e-15 55.5 8.7 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|433589695|ref|YP_007279191.1| - 2.2e-33 113.9 45.8 8.3e-07 29.3 1.4 9.0 8 1 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|433589695|ref|YP_007279191.1| - 4.8e-18 64.1 9.9 0.0049 16.7 0.0 6.9 6 0 0 6 6 6 5 PQQ enzyme repeat Xan_ur_permease PF00860.20 gi|433589696|ref|YP_007279192.1| - 2.4e-84 283.3 45.0 3e-84 283.0 45.0 1.1 1 0 0 1 1 1 1 Permease family Pribosyltran PF00156.27 gi|433589697|ref|YP_007279193.1| - 3.7e-18 65.5 2.0 4.7e-18 65.2 2.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|433589697|ref|YP_007279193.1| - 0.00039 19.9 0.0 0.00062 19.3 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|433589697|ref|YP_007279193.1| - 0.034 13.6 0.3 0.047 13.2 0.3 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase ASRT PF07100.11 gi|433589697|ref|YP_007279193.1| - 0.034 14.2 0.0 0.05 13.7 0.0 1.3 1 0 0 1 1 1 0 Anabaena sensory rhodopsin transducer Peptidase_M3 PF01432.20 gi|433589698|ref|YP_007279194.1| - 1.5e-64 219.0 1.7 1.5e-64 219.0 1.7 2.4 2 1 0 2 2 2 2 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|433589698|ref|YP_007279194.1| - 9.3e-21 73.9 2.9 1.9e-20 72.9 0.2 2.7 2 0 0 2 2 2 1 Oligopeptidase F Sipho_Gp157 PF05565.11 gi|433589698|ref|YP_007279194.1| - 0.13 12.2 2.4 0.44 10.6 2.4 2.0 1 0 0 1 1 1 0 Siphovirus Gp157 AAA PF00004.29 gi|433589699|ref|YP_007279195.1| - 1.8e-45 154.6 1.8 1.8e-45 154.6 0.1 1.9 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|433589699|ref|YP_007279195.1| - 2.4e-15 56.1 0.8 7.1e-15 54.5 0.8 1.8 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|433589699|ref|YP_007279195.1| - 1.7e-08 34.8 0.2 4.7e-08 33.3 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) Prot_ATP_ID_OB PF16450.5 gi|433589699|ref|YP_007279195.1| - 1.7e-07 31.1 1.7 3.1e-07 30.3 0.5 2.1 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain RuvB_N PF05496.12 gi|433589699|ref|YP_007279195.1| - 3.9e-07 30.0 0.1 1.5e-06 28.0 0.0 2.0 3 0 0 3 3 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|433589699|ref|YP_007279195.1| - 1.6e-06 28.1 0.3 9.7e-06 25.6 0.3 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|433589699|ref|YP_007279195.1| - 1.2e-05 25.8 3.9 9.3e-05 22.9 0.5 3.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|433589699|ref|YP_007279195.1| - 1.5e-05 25.3 1.5 0.002 18.4 0.0 2.9 2 1 1 3 3 3 1 AAA domain DUF815 PF05673.13 gi|433589699|ref|YP_007279195.1| - 0.0001 21.5 0.0 0.00022 20.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|433589699|ref|YP_007279195.1| - 0.0002 21.9 0.3 0.0035 17.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|433589699|ref|YP_007279195.1| - 0.00078 18.7 0.0 0.0015 17.8 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_13 PF13166.6 gi|433589699|ref|YP_007279195.1| - 0.00092 18.0 0.7 0.09 11.4 1.2 2.1 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|433589699|ref|YP_007279195.1| - 0.0018 18.3 0.0 0.0048 16.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|433589699|ref|YP_007279195.1| - 0.0018 17.7 0.0 0.0043 16.5 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|433589699|ref|YP_007279195.1| - 0.0027 18.0 0.1 0.0027 18.0 0.1 2.9 3 1 0 3 3 3 1 AAA domain Sigma54_activat PF00158.26 gi|433589699|ref|YP_007279195.1| - 0.0032 17.2 0.1 0.083 12.6 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|433589699|ref|YP_007279195.1| - 0.0037 17.0 0.0 0.01 15.6 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|433589699|ref|YP_007279195.1| - 0.0048 17.1 0.0 0.014 15.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain HupF_HypC PF01455.18 gi|433589699|ref|YP_007279195.1| - 0.0061 16.7 0.2 0.034 14.3 0.1 2.3 1 1 1 2 2 2 1 HupF/HypC family NACHT PF05729.12 gi|433589699|ref|YP_007279195.1| - 0.0082 16.1 0.1 0.1 12.5 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_17 PF13207.6 gi|433589699|ref|YP_007279195.1| - 0.01 16.3 0.5 0.01 16.3 0.5 3.1 3 1 0 3 3 2 0 AAA domain AAA_24 PF13479.6 gi|433589699|ref|YP_007279195.1| - 0.01 15.6 1.4 0.017 14.9 0.1 2.1 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|433589699|ref|YP_007279195.1| - 0.01 16.2 0.0 0.024 15.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase GAS PF13851.6 gi|433589699|ref|YP_007279195.1| - 0.012 15.0 0.7 0.02 14.2 0.7 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Bac_DnaA PF00308.18 gi|433589699|ref|YP_007279195.1| - 0.014 15.2 0.5 0.66 9.8 0.0 2.4 3 0 0 3 3 2 0 Bacterial dnaA protein Prot_ATP_OB_N PF17758.1 gi|433589699|ref|YP_007279195.1| - 0.017 14.8 0.1 0.058 13.1 0.1 2.0 1 0 0 1 1 1 0 Proteasomal ATPase OB N-terminal domain AAA_7 PF12775.7 gi|433589699|ref|YP_007279195.1| - 0.019 14.5 0.0 0.047 13.2 0.0 1.7 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|433589699|ref|YP_007279195.1| - 0.02 14.5 7.0 0.17 11.4 0.1 3.3 2 1 0 3 3 3 0 AAA domain AAA_11 PF13086.6 gi|433589699|ref|YP_007279195.1| - 0.024 14.4 0.2 0.28 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Rootletin PF15035.6 gi|433589699|ref|YP_007279195.1| - 0.027 14.5 1.4 0.027 14.5 1.4 1.7 2 0 0 2 2 1 0 Ciliary rootlet component, centrosome cohesion NB-ARC PF00931.22 gi|433589699|ref|YP_007279195.1| - 0.031 13.4 0.2 0.12 11.5 0.0 2.2 2 1 0 2 2 2 0 NB-ARC domain Parvo_NS1 PF01057.17 gi|433589699|ref|YP_007279195.1| - 0.042 12.9 0.0 0.074 12.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|433589699|ref|YP_007279195.1| - 0.043 13.7 0.0 0.077 12.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|433589699|ref|YP_007279195.1| - 0.047 13.6 0.7 0.59 10.0 0.0 2.5 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea TniB PF05621.11 gi|433589699|ref|YP_007279195.1| - 0.049 13.0 0.0 1.2 8.5 0.0 2.3 1 1 0 2 2 2 0 Bacterial TniB protein TsaE PF02367.17 gi|433589699|ref|YP_007279195.1| - 0.051 13.6 0.0 0.095 12.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|433589699|ref|YP_007279195.1| - 0.09 12.1 6.2 0.18 11.1 0.0 2.9 2 1 1 3 3 3 0 KaiC Troponin PF00992.20 gi|433589699|ref|YP_007279195.1| - 0.13 12.6 3.4 0.32 11.3 3.4 1.6 1 0 0 1 1 1 0 Troponin BLOC1_2 PF10046.9 gi|433589699|ref|YP_007279195.1| - 0.14 12.5 4.3 0.16 12.3 1.0 2.5 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ABC_tran PF00005.27 gi|433589699|ref|YP_007279195.1| - 0.15 12.6 1.4 0.41 11.2 0.0 2.3 2 2 0 2 2 2 0 ABC transporter NTPase_1 PF03266.15 gi|433589699|ref|YP_007279195.1| - 0.22 11.4 1.9 0.57 10.1 0.1 2.7 3 1 0 3 3 3 0 NTPase ZapB PF06005.12 gi|433589699|ref|YP_007279195.1| - 0.23 12.0 6.8 0.13 12.7 3.4 2.4 3 0 0 3 3 1 0 Cell division protein ZapB CENP-Q PF13094.6 gi|433589699|ref|YP_007279195.1| - 0.27 11.4 9.5 1.1 9.4 9.5 2.0 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit APG6_N PF17675.1 gi|433589699|ref|YP_007279195.1| - 1.5 9.4 6.9 0.32 11.5 2.8 2.0 2 0 0 2 2 1 0 Apg6 coiled-coil region Fez1 PF06818.15 gi|433589699|ref|YP_007279195.1| - 3.2 8.2 6.6 2.1 8.8 4.6 1.8 2 1 0 2 2 1 0 Fez1 PvlArgDC PF01862.16 gi|433589700|ref|YP_007279196.1| - 3.3e-39 134.3 0.1 4.1e-39 134.0 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) ATP-synt_D PF01813.17 gi|433589703|ref|YP_007279199.1| - 2.6e-54 184.1 10.2 3.9e-54 183.5 10.2 1.3 1 0 0 1 1 1 1 ATP synthase subunit D TAT_signal PF10518.9 gi|433589704|ref|YP_007279200.1| - 0.0082 15.9 0.0 0.022 14.6 0.0 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence bPH_2 PF03703.14 gi|433589705|ref|YP_007279201.1| - 1.4e-16 60.4 0.0 2.1e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF1453 PF07301.11 gi|433589705|ref|YP_007279201.1| - 0.025 14.6 0.6 0.069 13.1 0.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1453) bPH_2 PF03703.14 gi|433589706|ref|YP_007279202.1| - 2.4e-39 133.4 0.2 1.4e-14 54.0 0.0 3.4 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|433589706|ref|YP_007279202.1| - 0.02 14.9 0.0 5.1 7.3 0.0 2.6 2 0 0 2 2 2 0 Bacterial PH domain ABC_tran PF00005.27 gi|433589707|ref|YP_007279203.1| - 1.8e-35 122.4 0.0 2.7e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|433589707|ref|YP_007279203.1| - 2.1e-08 34.2 0.3 6e-08 32.7 0.3 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|433589707|ref|YP_007279203.1| - 1.1e-05 25.4 0.0 0.093 12.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|433589707|ref|YP_007279203.1| - 0.00057 20.3 0.2 0.0014 19.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|433589707|ref|YP_007279203.1| - 0.0025 17.7 0.0 0.0038 17.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|433589707|ref|YP_007279203.1| - 0.0069 16.7 0.1 0.017 15.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|433589707|ref|YP_007279203.1| - 0.016 15.6 0.6 0.1 13.0 0.6 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CysA_C_terminal PF17850.1 gi|433589707|ref|YP_007279203.1| - 0.046 14.3 0.8 0.26 11.9 0.2 2.6 2 0 0 2 2 2 0 CysA C-terminal regulatory domain PRK PF00485.18 gi|433589707|ref|YP_007279203.1| - 0.052 13.3 0.3 0.1 12.3 0.2 1.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 gi|433589707|ref|YP_007279203.1| - 0.088 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|433589707|ref|YP_007279203.1| - 0.12 12.4 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|433589707|ref|YP_007279203.1| - 0.19 11.2 0.2 8.2 5.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NB-ARC PF00931.22 gi|433589707|ref|YP_007279203.1| - 0.22 10.7 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Adeno_IVa2 PF02456.15 gi|433589707|ref|YP_007279203.1| - 0.29 9.9 0.0 0.42 9.3 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.22 gi|433589708|ref|YP_007279204.1| - 7.6e-10 38.8 19.9 1.4e-08 34.7 19.9 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|433589709|ref|YP_007279205.1| - 1.1e-14 54.6 14.4 1.1e-14 54.6 14.4 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component MpPF26 PF07666.11 gi|433589709|ref|YP_007279205.1| - 6.4 6.9 6.7 44 4.2 0.0 3.2 3 0 0 3 3 3 0 M penetrans paralogue family 26 SBP_bac_6 PF13343.6 gi|433589710|ref|YP_007279206.1| - 1.9e-16 60.2 0.0 2.6e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|433589710|ref|YP_007279206.1| - 2.2e-13 50.7 0.9 3.2e-13 50.2 0.9 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|433589710|ref|YP_007279206.1| - 2.1e-11 44.4 1.8 4.4e-10 40.0 1.4 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|433589710|ref|YP_007279206.1| - 9.3e-11 41.9 0.0 1.5e-10 41.2 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein AMP-binding PF00501.28 gi|433589711|ref|YP_007279207.1| - 2.8e-97 326.0 0.6 3.2e-97 325.8 0.6 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433589711|ref|YP_007279207.1| - 2e-17 63.9 0.0 5.2e-17 62.6 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ATP-synt_ab PF00006.25 gi|433589712|ref|YP_007279208.1| - 1.9e-65 220.5 0.0 2.7e-65 220.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|433589712|ref|YP_007279208.1| - 2.2e-14 53.7 1.5 5.9e-14 52.3 1.5 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|433589712|ref|YP_007279208.1| - 0.0018 18.4 0.6 0.0067 16.5 0.6 2.1 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|433589713|ref|YP_007279209.1| - 5.6e-92 307.2 0.0 7.3e-92 306.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|433589713|ref|YP_007279209.1| - 9.2e-40 135.3 0.1 1.5e-39 134.6 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|433589713|ref|YP_007279209.1| - 1.1e-11 45.1 3.9 1.1e-11 45.1 3.9 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|433589713|ref|YP_007279209.1| - 0.031 14.6 0.2 0.08 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATP-synt_F PF01990.17 gi|433589714|ref|YP_007279210.1| - 2.8e-15 56.4 0.1 3.2e-15 56.2 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|433589715|ref|YP_007279211.1| - 3.1e-78 263.6 5.8 3.5e-78 263.5 5.8 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.18 gi|433589716|ref|YP_007279212.1| - 1.1e-40 139.3 8.9 1.3e-40 139.0 8.9 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF773 PF05600.12 gi|433589716|ref|YP_007279212.1| - 0.013 14.3 1.6 0.014 14.2 1.0 1.3 1 1 0 1 1 1 0 CDK5 regulatory subunit-associated protein 3 Peptidase_U32 PF01136.19 gi|433589716|ref|YP_007279212.1| - 0.028 13.5 2.3 0.042 13.0 2.3 1.2 1 0 0 1 1 1 0 Peptidase family U32 V_ATPase_I PF01496.19 gi|433589716|ref|YP_007279212.1| - 0.032 12.2 1.0 0.036 12.0 1.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family OmpH PF03938.14 gi|433589716|ref|YP_007279212.1| - 0.12 12.7 8.6 0.19 12.1 8.6 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) V-ATPase_G_2 PF16999.5 gi|433589716|ref|YP_007279212.1| - 0.15 12.5 18.4 0.29 11.6 18.4 1.5 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit eIF-5a PF01287.20 gi|433589716|ref|YP_007279212.1| - 0.27 11.4 2.9 0.33 11.1 0.2 2.4 2 1 0 2 2 2 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold HSP70 PF00012.20 gi|433589716|ref|YP_007279212.1| - 1.1 7.3 7.2 1.4 7.0 7.2 1.1 1 0 0 1 1 1 0 Hsp70 protein ATP-synt_B PF00430.18 gi|433589716|ref|YP_007279212.1| - 2.8 8.1 23.5 0.27 11.3 14.9 2.1 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) V-ATPase_G PF03179.15 gi|433589716|ref|YP_007279212.1| - 3.6 8.2 15.9 0.82 10.2 9.4 2.2 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit Merozoite_SPAM PF07133.11 gi|433589716|ref|YP_007279212.1| - 6.9 6.6 21.4 0.38 10.7 14.5 2.0 1 1 1 2 2 2 0 Merozoite surface protein (SPAM) ATP-synt_C PF00137.21 gi|433589717|ref|YP_007279213.1| - 3.9e-13 49.5 9.7 5.1e-13 49.1 9.7 1.2 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.19 gi|433589718|ref|YP_007279214.1| - 9.4e-28 96.6 2.1 2e-13 49.2 0.1 4.3 4 0 0 4 4 4 3 V-type ATPase 116kDa subunit family DUF3450 PF11932.8 gi|433589718|ref|YP_007279214.1| - 0.057 12.7 1.0 2.2 7.5 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Prefoldin_2 PF01920.20 gi|433589718|ref|YP_007279214.1| - 0.098 12.6 1.6 11 6.0 0.2 2.3 2 0 0 2 2 2 0 Prefoldin subunit Spc24 PF08286.11 gi|433589718|ref|YP_007279214.1| - 0.17 12.1 2.0 9.5 6.5 0.0 2.3 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 FlaC_arch PF05377.11 gi|433589718|ref|YP_007279214.1| - 0.29 11.5 1.6 4 7.9 0.0 2.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4407 PF14362.6 gi|433589718|ref|YP_007279214.1| - 2.4 7.5 11.4 7 5.9 3.0 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4407) DUF4140 PF13600.6 gi|433589718|ref|YP_007279214.1| - 5.6 7.5 12.1 4.6 7.7 1.1 2.9 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) TPR_MLP1_2 PF07926.12 gi|433589718|ref|YP_007279214.1| - 6.9 6.7 7.2 8.9 6.4 1.0 2.5 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein ATP-synt_B PF00430.18 gi|433589719|ref|YP_007279215.1| - 3.2e-06 27.3 22.6 4e-06 27.0 22.6 1.1 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) V-ATPase_G_2 PF16999.5 gi|433589719|ref|YP_007279215.1| - 0.0026 18.1 28.6 0.0042 17.5 28.6 1.3 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit V-ATPase_G PF03179.15 gi|433589719|ref|YP_007279215.1| - 0.003 18.0 23.0 0.15 12.6 8.0 2.1 1 1 1 2 2 2 2 Vacuolar (H+)-ATPase G subunit HrpE PF06188.12 gi|433589719|ref|YP_007279215.1| - 0.0044 16.9 12.6 0.0061 16.5 12.6 1.3 1 1 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E DivIVA PF05103.13 gi|433589719|ref|YP_007279215.1| - 0.008 16.3 18.1 0.19 11.8 2.2 2.0 1 1 1 2 2 2 2 DivIVA protein dCache_2 PF08269.11 gi|433589719|ref|YP_007279215.1| - 0.035 13.3 4.4 0.026 13.7 3.2 1.3 1 1 0 1 1 1 0 Cache domain DUF883 PF05957.13 gi|433589719|ref|YP_007279215.1| - 0.052 14.2 18.0 1.2 9.8 9.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Muted PF14942.6 gi|433589719|ref|YP_007279215.1| - 0.094 13.1 13.8 0.14 12.5 13.8 1.3 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein YtxH PF12732.7 gi|433589719|ref|YP_007279215.1| - 0.098 13.2 10.1 19 5.9 10.1 2.3 1 1 0 1 1 1 0 YtxH-like protein DUF3552 PF12072.8 gi|433589719|ref|YP_007279215.1| - 0.16 11.4 27.1 0.067 12.6 12.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) PIN_8 PF18476.1 gi|433589719|ref|YP_007279215.1| - 0.18 11.7 6.6 0.21 11.4 6.6 1.1 1 0 0 1 1 1 0 PIN like domain Phage_GPO PF05929.11 gi|433589719|ref|YP_007279215.1| - 0.18 11.4 6.0 0.2 11.3 6.0 1.0 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Apolipoprotein PF01442.18 gi|433589719|ref|YP_007279215.1| - 0.21 11.4 24.2 0.61 9.9 24.2 1.7 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain vATP-synt_E PF01991.18 gi|433589719|ref|YP_007279215.1| - 0.29 10.5 25.4 0.042 13.2 16.8 2.3 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit DUF3435 PF11917.8 gi|433589719|ref|YP_007279215.1| - 0.38 9.6 9.6 0.5 9.2 9.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) LUC7 PF03194.15 gi|433589719|ref|YP_007279215.1| - 0.39 10.3 14.4 0.43 10.2 14.4 1.0 1 0 0 1 1 1 0 LUC7 N_terminus CDH1_2_SANT_HL1 PF18375.1 gi|433589719|ref|YP_007279215.1| - 0.55 10.9 5.8 0.84 10.3 5.8 1.3 1 0 0 1 1 1 0 CDH1/2 SANT-Helical linker 1 OmpH PF03938.14 gi|433589719|ref|YP_007279215.1| - 0.66 10.3 14.2 1 9.7 14.2 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF1664 PF07889.12 gi|433589719|ref|YP_007279215.1| - 0.7 9.9 6.5 1.3 9.1 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Histidinol_dh PF00815.20 gi|433589719|ref|YP_007279215.1| - 1.3 7.9 7.4 1.5 7.7 7.4 1.0 1 0 0 1 1 1 0 Histidinol dehydrogenase CdvA PF18822.1 gi|433589719|ref|YP_007279215.1| - 1.6 8.6 16.5 0.19 11.6 2.2 2.1 1 1 1 2 2 2 0 CdvA-like coiled-coil domain Atg14 PF10186.9 gi|433589719|ref|YP_007279215.1| - 2.2 7.3 7.4 3 6.9 7.4 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 HSP70 PF00012.20 gi|433589719|ref|YP_007279215.1| - 2.5 6.2 13.4 2.9 5.9 13.4 1.0 1 0 0 1 1 1 0 Hsp70 protein Caudo_TAP PF02413.17 gi|433589719|ref|YP_007279215.1| - 2.8 8.1 12.7 10 6.3 5.2 2.7 1 1 2 3 3 3 0 Caudovirales tail fibre assembly protein, lambda gpK RRN3 PF05327.11 gi|433589719|ref|YP_007279215.1| - 3.4 6.1 7.8 4.1 5.8 7.8 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 MRP-S26 PF14943.6 gi|433589719|ref|YP_007279215.1| - 4.2 7.2 23.1 7.9 6.4 23.1 1.4 1 1 0 1 1 1 0 Mitochondrial ribosome subunit S26 Arm-DNA-bind_5 PF17293.2 gi|433589719|ref|YP_007279215.1| - 4.4 7.8 7.7 4.2 7.9 0.1 2.2 1 1 1 2 2 2 0 Arm DNA-binding domain Peptidase_M41 PF01434.18 gi|433589719|ref|YP_007279215.1| - 4.4 7.1 10.3 2 8.2 4.5 2.0 1 1 1 2 2 2 0 Peptidase family M41 DUF4407 PF14362.6 gi|433589719|ref|YP_007279215.1| - 5.1 6.3 11.4 7.2 5.9 11.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF874 PF05917.11 gi|433589719|ref|YP_007279215.1| - 5.6 5.9 11.5 6.1 5.8 11.5 1.0 1 0 0 1 1 1 0 Helicobacter pylori protein of unknown function (DUF874) FUSC PF04632.12 gi|433589719|ref|YP_007279215.1| - 5.8 5.3 9.9 6.5 5.2 9.9 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family GBP_C PF02841.14 gi|433589719|ref|YP_007279215.1| - 7.8 5.8 17.6 9 5.6 17.6 1.0 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain Methyltransf_25 PF13649.6 gi|433589720|ref|YP_007279216.1| - 2.1e-25 89.2 0.0 3.1e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433589720|ref|YP_007279216.1| - 3.4e-25 88.5 0.0 5.2e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433589720|ref|YP_007279216.1| - 1.1e-19 70.7 0.0 1.3e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433589720|ref|YP_007279216.1| - 5.1e-18 65.3 0.0 1.2e-14 54.3 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|433589720|ref|YP_007279216.1| - 6.6e-16 58.9 0.0 9.2e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433589720|ref|YP_007279216.1| - 8.3e-16 58.3 0.0 1.4e-15 57.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|433589720|ref|YP_007279216.1| - 1.3e-06 28.3 0.0 1.8e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|433589720|ref|YP_007279216.1| - 9.5e-06 24.9 0.0 1e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_29 PF03141.16 gi|433589720|ref|YP_007279216.1| - 1.2e-05 24.0 0.0 1.6e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.11 gi|433589720|ref|YP_007279216.1| - 3.4e-05 22.9 0.0 4.3e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|433589720|ref|YP_007279216.1| - 0.00015 21.4 0.0 0.00062 19.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|433589720|ref|YP_007279216.1| - 0.00022 20.9 0.0 0.00029 20.5 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|433589720|ref|YP_007279216.1| - 0.00096 18.5 0.0 0.0013 18.0 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.12 gi|433589720|ref|YP_007279216.1| - 0.004 16.3 0.0 0.0053 15.9 0.0 1.3 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_PK PF05891.12 gi|433589720|ref|YP_007279216.1| - 0.012 15.2 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Methyltransf_2 PF00891.18 gi|433589720|ref|YP_007279216.1| - 0.019 14.3 0.0 0.035 13.4 0.0 1.4 1 1 0 1 1 1 0 O-methyltransferase domain Methyltransf_33 PF10017.9 gi|433589720|ref|YP_007279216.1| - 0.037 13.2 0.0 0.093 11.9 0.0 1.6 2 0 0 2 2 2 0 Histidine-specific methyltransferase, SAM-dependent Methyltransf_32 PF13679.6 gi|433589720|ref|YP_007279216.1| - 0.042 13.9 0.0 0.056 13.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 gi|433589720|ref|YP_007279216.1| - 0.058 13.2 0.0 0.41 10.4 0.0 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase NodS PF05401.11 gi|433589720|ref|YP_007279216.1| - 0.06 13.0 0.0 0.076 12.6 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) FtsJ PF01728.19 gi|433589720|ref|YP_007279216.1| - 0.086 12.9 0.0 0.12 12.5 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase PrmA PF06325.13 gi|433589720|ref|YP_007279216.1| - 0.14 11.5 0.0 0.36 10.2 0.0 1.6 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_5 PF01795.19 gi|433589720|ref|YP_007279216.1| - 0.17 11.3 0.0 0.27 10.7 0.0 1.2 1 0 0 1 1 1 0 MraW methylase family Methyltransf_18 PF12847.7 gi|433589720|ref|YP_007279216.1| - 0.2 11.6 0.0 0.29 11.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Pilin_N PF07790.11 gi|433589721|ref|YP_007279217.1| - 4.1e-14 53.2 3.4 8.2e-14 52.3 3.4 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal BiPBP_C PF06832.12 gi|433589722|ref|YP_007279218.1| - 0.055 13.5 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family ZapB PF06005.12 gi|433589722|ref|YP_007279218.1| - 3.3 8.2 7.4 35 4.9 7.4 2.3 1 1 0 1 1 1 0 Cell division protein ZapB HTH_IclR PF09339.10 gi|433589723|ref|YP_007279219.1| - 0.026 14.3 0.0 0.063 13.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF3489 PF11994.8 gi|433589723|ref|YP_007279219.1| - 0.17 11.9 0.0 0.35 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HTH_24 PF13412.6 gi|433589723|ref|YP_007279219.1| - 0.18 11.4 0.0 0.4 10.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Radical_SAM PF04055.21 gi|433589725|ref|YP_007279221.1| - 9.8e-06 26.0 3.1 0.011 16.2 0.2 2.9 2 1 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.6 gi|433589725|ref|YP_007279221.1| - 0.0043 17.2 0.1 0.0081 16.3 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DDE_3 PF13358.6 gi|433589726|ref|YP_007279222.1| - 1.6e-14 53.9 0.0 1.5e-13 50.8 0.0 2.1 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|433589726|ref|YP_007279222.1| - 2.3e-11 44.1 0.3 9.4e-11 42.2 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|433589726|ref|YP_007279222.1| - 4.4e-10 39.4 0.0 1.4e-09 37.9 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433589726|ref|YP_007279222.1| - 6.7e-09 35.3 0.0 1.5e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|433589726|ref|YP_007279222.1| - 1.2e-05 24.8 0.0 8.6e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|433589726|ref|YP_007279222.1| - 2.7e-05 24.2 0.0 6.8e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|433589726|ref|YP_007279222.1| - 0.0018 18.3 0.1 0.0041 17.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|433589726|ref|YP_007279222.1| - 0.0023 17.4 0.0 0.0074 15.8 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 DDE_1 PF03184.19 gi|433589726|ref|YP_007279222.1| - 0.0027 17.4 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF746 PF05344.11 gi|433589726|ref|YP_007279222.1| - 0.016 15.1 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.6 gi|433589726|ref|YP_007279222.1| - 0.041 14.4 0.0 0.091 13.3 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.12 gi|433589726|ref|YP_007279222.1| - 0.058 13.1 0.1 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 rve PF00665.26 gi|433589726|ref|YP_007279222.1| - 0.064 13.5 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain DUF373 PF04123.13 gi|433589727|ref|YP_007279223.1| - 4.4e-120 401.1 4.7 5.3e-120 400.9 4.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) polyprenyl_synt PF00348.17 gi|433589728|ref|YP_007279224.1| - 6e-53 179.5 0.0 7.2e-53 179.3 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase Phosphatase PF15698.5 gi|433589728|ref|YP_007279224.1| - 0.028 13.5 0.3 0.048 12.8 0.3 1.4 1 1 0 1 1 1 0 Phosphatase ETF_alpha PF00766.19 gi|433589729|ref|YP_007279225.1| - 4.6e-36 122.7 0.1 1e-35 121.6 0.1 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|433589729|ref|YP_007279225.1| - 1.5e-30 106.4 1.2 2.2e-30 105.9 1.2 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain PBP_like PF12727.7 gi|433589729|ref|YP_007279225.1| - 0.07 12.2 0.1 1.4 8.0 0.0 2.2 2 0 0 2 2 2 0 PBP superfamily domain ETF PF01012.21 gi|433589730|ref|YP_007279226.1| - 6.7e-36 123.9 1.6 8.2e-36 123.6 1.6 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain TRAM PF01938.20 gi|433589731|ref|YP_007279227.1| - 7e-08 32.4 0.2 9.6e-08 31.9 0.2 1.2 1 0 0 1 1 1 1 TRAM domain LKAAEAR PF15478.6 gi|433589731|ref|YP_007279227.1| - 0.037 14.3 0.0 0.057 13.7 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function with LKAAEAR motif Lactamase_B PF00753.27 gi|433589732|ref|YP_007279228.1| - 2.7e-24 86.3 5.0 5.4e-24 85.3 5.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433589732|ref|YP_007279228.1| - 0.0011 18.5 1.1 0.004 16.7 1.1 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|433589732|ref|YP_007279228.1| - 0.025 14.5 0.0 0.11 12.3 0.0 2.0 2 1 0 2 2 2 0 Beta-lactamase superfamily domain NicO PF03824.16 gi|433589732|ref|YP_007279228.1| - 0.2 10.9 0.1 0.36 10.1 0.1 1.4 1 0 0 1 1 1 0 High-affinity nickel-transport protein TFX_C PF14601.6 gi|433589734|ref|YP_007279230.1| - 3.8e-30 103.7 0.1 6.6e-30 102.9 0.1 1.4 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|433589734|ref|YP_007279230.1| - 1.4e-07 30.9 0.2 3.2e-07 29.7 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|433589734|ref|YP_007279230.1| - 4.1e-05 23.0 0.1 6.5e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_19 PF12844.7 gi|433589734|ref|YP_007279230.1| - 7.2e-05 22.7 0.0 0.00014 21.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|433589734|ref|YP_007279230.1| - 8.9e-05 22.8 3.9 0.00017 21.8 3.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|433589734|ref|YP_007279230.1| - 0.00034 20.2 0.1 0.00072 19.2 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|433589734|ref|YP_007279230.1| - 0.00036 20.5 0.1 0.00069 19.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.7 gi|433589734|ref|YP_007279230.1| - 0.001 18.9 0.1 0.0026 17.6 0.1 1.7 1 1 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|433589734|ref|YP_007279230.1| - 0.0017 18.1 0.1 0.0034 17.1 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|433589734|ref|YP_007279230.1| - 0.0041 17.2 0.0 0.0081 16.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|433589734|ref|YP_007279230.1| - 0.0082 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433589734|ref|YP_007279230.1| - 0.011 15.7 0.1 0.027 14.4 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain KORA PF16509.5 gi|433589734|ref|YP_007279230.1| - 0.021 15.1 0.1 0.038 14.3 0.1 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor TAL_effector PF03377.13 gi|433589734|ref|YP_007279230.1| - 0.023 15.0 0.3 0.072 13.4 0.1 2.0 2 0 0 2 2 2 0 TAL effector repeat RepB PF07506.11 gi|433589734|ref|YP_007279230.1| - 0.024 14.7 0.1 0.058 13.5 0.1 1.6 2 0 0 2 2 2 0 RepB plasmid partitioning protein HTH_24 PF13412.6 gi|433589734|ref|YP_007279230.1| - 0.039 13.5 0.1 0.075 12.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding KorB PF08535.10 gi|433589734|ref|YP_007279230.1| - 0.089 12.8 0.1 0.24 11.5 0.1 1.9 1 1 0 1 1 1 0 KorB domain HTH_29 PF13551.6 gi|433589734|ref|YP_007279230.1| - 0.096 12.7 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 gi|433589734|ref|YP_007279230.1| - 0.11 12.7 0.1 0.21 11.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain adh_short_C2 PF13561.6 gi|433589735|ref|YP_007279231.1| - 7.5e-45 153.3 0.0 1.2e-44 152.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433589735|ref|YP_007279231.1| - 1.5e-35 122.5 0.0 1.8e-35 122.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433589735|ref|YP_007279231.1| - 1.1e-08 35.2 0.0 1.6e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 KR domain 7TM-7TMR_HD PF07698.11 gi|433589736|ref|YP_007279232.1| - 0.65 9.7 16.4 0.059 13.1 7.0 2.4 2 0 0 2 2 2 0 7TM receptor with intracellular HD hydrolase DUF5518 PF17647.1 gi|433589737|ref|YP_007279233.1| - 4.1e-06 26.9 22.5 1.6e-05 25.0 14.7 4.1 2 2 2 4 4 4 2 Family of unknown function (DUF5518) DDE_Tnp_IS1 PF03400.13 gi|433589737|ref|YP_007279233.1| - 0.12 12.8 0.5 0.23 11.8 0.1 1.7 2 0 0 2 2 2 0 IS1 transposase ThiF PF00899.21 gi|433589738|ref|YP_007279234.1| - 4.6e-66 222.7 0.0 6.1e-66 222.3 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|433589738|ref|YP_007279234.1| - 0.011 16.0 1.3 0.041 14.2 1.3 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|433589738|ref|YP_007279234.1| - 0.031 14.3 0.1 0.078 13.0 0.1 1.7 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase DUF348 PF03990.14 gi|433589738|ref|YP_007279234.1| - 0.034 13.9 0.9 0.084 12.6 0.9 1.7 1 0 0 1 1 1 0 G5-linked-Ubiquitin-like domain PglD_N PF17836.1 gi|433589738|ref|YP_007279234.1| - 0.054 14.1 0.2 0.098 13.3 0.2 1.4 1 0 0 1 1 1 0 PglD N-terminal domain DZR PF12773.7 gi|433589739|ref|YP_007279235.1| - 0.0039 17.2 0.2 0.0039 17.2 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|433589739|ref|YP_007279235.1| - 0.054 12.9 6.5 0.11 11.9 6.0 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|433589739|ref|YP_007279235.1| - 0.1 12.3 3.1 0.22 11.3 3.1 1.5 1 1 0 1 1 1 0 zinc-ribbon domain RecR PF02132.15 gi|433589739|ref|YP_007279235.1| - 0.13 11.9 0.8 0.21 11.2 0.8 1.3 1 0 0 1 1 1 0 RecR protein OrfB_Zn_ribbon PF07282.11 gi|433589739|ref|YP_007279235.1| - 0.25 11.3 3.2 1.1 9.2 3.2 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|433589739|ref|YP_007279235.1| - 0.52 10.5 3.4 0.39 10.9 0.3 2.0 1 1 1 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|433589739|ref|YP_007279235.1| - 0.69 10.0 5.3 5.8 7.1 5.3 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|433589740|ref|YP_007279236.1| - 0.0015 18.5 0.5 0.002 18.1 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|433589740|ref|YP_007279236.1| - 0.0085 15.5 0.5 2.2 7.8 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|433589740|ref|YP_007279236.1| - 0.013 15.2 2.6 0.92 9.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433589740|ref|YP_007279236.1| - 0.022 14.9 2.2 0.044 13.9 2.2 1.5 1 1 0 1 1 1 0 Zinc ribbon domain DUF4428 PF14471.6 gi|433589740|ref|YP_007279236.1| - 0.05 13.5 0.1 0.078 12.9 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) zf-HYPF PF07503.12 gi|433589740|ref|YP_007279236.1| - 0.073 12.9 2.3 0.8 9.5 0.2 2.3 2 0 0 2 2 2 0 HypF finger DCR PF14047.6 gi|433589740|ref|YP_007279236.1| - 0.082 13.1 0.2 0.11 12.8 0.2 1.3 1 0 0 1 1 1 0 Dppa2/4 conserved region zf_UBZ PF18439.1 gi|433589740|ref|YP_007279236.1| - 0.14 11.8 0.8 5.9 6.6 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger RecR PF02132.15 gi|433589740|ref|YP_007279236.1| - 0.4 10.3 4.6 0.92 9.1 4.6 1.6 1 1 0 1 1 1 0 RecR protein Rubredoxin_2 PF18073.1 gi|433589740|ref|YP_007279236.1| - 0.9 9.3 4.3 3.6 7.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain UvrD-helicase PF00580.21 gi|433589741|ref|YP_007279237.1| - 9.2e-26 91.1 0.2 1.3e-11 44.6 0.1 2.4 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|433589741|ref|YP_007279237.1| - 5.7e-24 85.1 0.0 1.6e-23 83.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain UvrD_C PF13361.6 gi|433589741|ref|YP_007279237.1| - 3.1e-14 53.1 0.0 3.6e-09 36.5 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|433589741|ref|YP_007279237.1| - 9e-10 38.6 0.2 1.9e-05 24.5 0.0 3.1 3 0 0 3 3 3 2 AAA domain UvrD_C_2 PF13538.6 gi|433589741|ref|YP_007279237.1| - 1.7e-09 37.4 0.4 0.0031 17.3 0.1 2.8 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|433589741|ref|YP_007279237.1| - 3.2e-05 23.8 0.1 3.6 7.3 0.0 4.2 5 0 0 5 5 5 2 Viral (Superfamily 1) RNA helicase DEAD PF00270.29 gi|433589741|ref|YP_007279237.1| - 0.0011 18.8 0.0 0.49 10.1 0.0 2.6 2 0 0 2 2 2 2 DEAD/DEAH box helicase Herpes_ori_bp PF02399.15 gi|433589741|ref|YP_007279237.1| - 0.0024 16.0 0.0 0.0039 15.3 0.0 1.2 1 0 0 1 1 1 1 Origin of replication binding protein AAA_11 PF13086.6 gi|433589741|ref|YP_007279237.1| - 0.0026 17.6 0.0 0.0069 16.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|433589741|ref|YP_007279237.1| - 0.0044 17.3 0.0 1 9.7 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|433589741|ref|YP_007279237.1| - 0.11 12.0 0.7 0.49 10.0 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|433589741|ref|YP_007279237.1| - 0.13 12.6 1.9 0.72 10.2 0.0 2.8 3 1 0 3 3 3 0 AAA ATPase domain Peptidase_M24 PF00557.24 gi|433589742|ref|YP_007279238.1| - 1e-05 25.3 0.1 1.5e-05 24.8 0.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF4131 PF13567.6 gi|433589743|ref|YP_007279239.1| - 0.034 13.8 0.1 0.036 13.7 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2157 PF09925.9 gi|433589743|ref|YP_007279239.1| - 0.064 13.0 0.6 0.064 13.0 0.6 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) PAS PF00989.25 gi|433589744|ref|YP_007279240.1| - 1.9e-29 102.0 0.0 2.6e-17 62.8 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|433589744|ref|YP_007279240.1| - 5.5e-26 90.9 0.0 3.8e-13 49.6 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|433589744|ref|YP_007279240.1| - 4.6e-22 78.4 7.1 1.3e-14 54.4 0.2 3.4 3 1 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|433589744|ref|YP_007279240.1| - 9.8e-22 76.5 0.1 1.7e-09 37.5 0.0 3.5 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|433589744|ref|YP_007279240.1| - 1.3e-15 57.8 0.0 3e-15 56.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|433589744|ref|YP_007279240.1| - 1.6e-09 37.7 1.7 1.7e-08 34.3 0.0 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|433589744|ref|YP_007279240.1| - 3.2e-09 37.2 1.7 7.9e-09 35.9 0.4 2.3 3 0 0 3 3 3 1 GAF domain PAS_3 PF08447.12 gi|433589744|ref|YP_007279240.1| - 1.1e-06 28.8 0.0 0.0048 17.2 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.7 gi|433589744|ref|YP_007279240.1| - 8.1e-06 26.0 0.0 0.00057 20.0 0.0 3.1 3 0 0 3 3 3 1 PAS fold GAF PF01590.26 gi|433589744|ref|YP_007279240.1| - 0.00076 20.1 0.0 0.0038 17.9 0.0 2.2 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.6 gi|433589744|ref|YP_007279240.1| - 0.0025 17.8 0.3 0.009 16.0 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain NAAA-beta PF15508.6 gi|433589744|ref|YP_007279240.1| - 0.074 13.4 0.0 18 5.7 0.0 2.7 2 0 0 2 2 2 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase Lum_binding PF00677.17 gi|433589745|ref|YP_007279241.1| - 7.7e-46 154.0 0.6 1.7e-22 79.2 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain PrsW-protease PF13367.6 gi|433589746|ref|YP_007279242.1| - 1.8e-43 148.3 15.7 1.8e-43 148.3 15.7 1.6 2 0 0 2 2 2 1 PrsW family intramembrane metalloprotease SDF PF00375.18 gi|433589747|ref|YP_007279243.1| - 1.3e-118 396.4 28.2 1.5e-118 396.2 28.2 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Peptidase_M50 PF02163.22 gi|433589747|ref|YP_007279243.1| - 3.7 6.7 6.0 13 5.0 4.0 2.6 2 1 0 2 2 2 0 Peptidase family M50 DUF402 PF04167.13 gi|433589749|ref|YP_007279245.1| - 1e-15 57.7 0.9 1e-15 57.7 0.9 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF402) NUDIX PF00293.28 gi|433589750|ref|YP_007279246.1| - 2.4e-13 50.3 0.5 2.9e-13 50.0 0.5 1.1 1 0 0 1 1 1 1 NUDIX domain SBF PF01758.16 gi|433589751|ref|YP_007279247.1| - 2.1e-39 135.3 15.9 3.4e-39 134.6 15.9 1.3 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|433589751|ref|YP_007279247.1| - 9.5e-15 54.7 19.6 1.2e-14 54.4 19.6 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.18 gi|433589751|ref|YP_007279247.1| - 0.31 9.4 11.8 0.0097 14.3 5.0 1.9 1 1 1 2 2 2 0 Membrane transport protein Zn-ribbon_8 PF09723.10 gi|433589752|ref|YP_007279248.1| - 2.9e-06 27.3 2.4 3.7e-06 26.9 2.1 1.3 1 1 0 1 1 1 1 Zinc ribbon domain Sgf11 PF08209.11 gi|433589752|ref|YP_007279248.1| - 0.00039 19.9 0.3 0.4 10.3 0.0 2.1 2 0 0 2 2 2 2 Sgf11 (transcriptional regulation protein) DZR PF12773.7 gi|433589752|ref|YP_007279248.1| - 0.0033 17.4 0.5 0.0042 17.1 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_4 PF14447.6 gi|433589752|ref|YP_007279248.1| - 0.0048 16.7 0.8 0.66 9.9 0.1 2.1 2 0 0 2 2 2 1 Prokaryotic RING finger family 4 zf_UBZ PF18439.1 gi|433589752|ref|YP_007279248.1| - 0.0071 15.9 1.2 0.17 11.5 0.2 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DUF2367 PF10164.9 gi|433589752|ref|YP_007279248.1| - 0.017 15.6 0.8 0.029 14.9 0.8 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2367) HypA PF01155.19 gi|433589752|ref|YP_007279248.1| - 0.018 15.0 0.2 0.018 15.0 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Di19 PF05605.12 gi|433589752|ref|YP_007279248.1| - 0.019 15.3 2.4 1.1 9.7 2.4 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-ISL3 PF14690.6 gi|433589752|ref|YP_007279248.1| - 0.02 15.5 1.6 3.8 8.3 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nop10p PF04135.12 gi|433589752|ref|YP_007279248.1| - 0.028 14.4 2.5 1.7 8.8 0.2 2.5 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family DNA_ligase_ZBD PF03119.16 gi|433589752|ref|YP_007279248.1| - 0.048 13.7 5.0 0.36 10.9 0.9 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.12 gi|433589752|ref|YP_007279248.1| - 0.049 13.6 1.0 0.25 11.3 1.0 1.8 1 1 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.6 gi|433589752|ref|YP_007279248.1| - 0.05 13.5 2.4 0.38 10.7 2.4 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) YacG PF03884.14 gi|433589752|ref|YP_007279248.1| - 0.052 13.3 2.2 5.6 6.8 0.1 2.1 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG zf-HYPF PF07503.12 gi|433589752|ref|YP_007279248.1| - 0.065 13.0 3.7 0.15 11.8 3.7 1.6 1 1 0 1 1 1 0 HypF finger Ogr_Delta PF04606.12 gi|433589752|ref|YP_007279248.1| - 0.071 13.1 2.2 2.5 8.2 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger UPF0547 PF10571.9 gi|433589752|ref|YP_007279248.1| - 0.085 13.0 3.3 2 8.6 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rad50_zn_hook PF04423.14 gi|433589752|ref|YP_007279248.1| - 0.088 12.7 0.4 0.088 12.7 0.4 1.9 1 1 1 2 2 2 0 Rad50 zinc hook motif zf-WRNIP1_ubi PF18279.1 gi|433589752|ref|YP_007279248.1| - 0.1 13.3 0.9 13 6.7 0.1 2.4 2 0 0 2 2 2 0 Werner helicase-interacting protein 1 ubiquitin-binding domain DUF2256 PF10013.9 gi|433589752|ref|YP_007279248.1| - 0.1 12.7 0.7 1.4 9.1 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) Elf1 PF05129.13 gi|433589752|ref|YP_007279248.1| - 0.1 12.6 0.6 0.16 12.1 0.6 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like CpXC PF14353.6 gi|433589752|ref|YP_007279248.1| - 0.17 11.9 1.5 0.94 9.5 0.2 1.9 1 1 1 2 2 2 0 CpXC protein zf-LITAF-like PF10601.9 gi|433589752|ref|YP_007279248.1| - 0.22 11.8 2.6 0.85 9.9 0.4 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Cys_rich_KTR PF14205.6 gi|433589752|ref|YP_007279248.1| - 0.39 10.6 2.4 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR TF_Zn_Ribbon PF08271.12 gi|433589752|ref|YP_007279248.1| - 0.55 9.8 5.2 11 5.6 0.5 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|433589752|ref|YP_007279248.1| - 0.56 9.6 4.2 2.1 7.8 4.0 1.9 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-C2H2 PF00096.26 gi|433589752|ref|YP_007279248.1| - 0.59 10.7 2.5 18 6.0 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-Mss51 PF13824.6 gi|433589752|ref|YP_007279248.1| - 0.87 9.7 4.6 7.8 6.7 4.5 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_20 PF12840.7 gi|433589754|ref|YP_007279250.1| - 2.3e-08 34.0 0.2 3.9e-08 33.2 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433589754|ref|YP_007279250.1| - 4.6e-07 29.6 0.0 7.6e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|433589754|ref|YP_007279250.1| - 0.00013 21.7 0.2 0.00022 20.9 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|433589754|ref|YP_007279250.1| - 0.00019 21.2 0.0 0.00034 20.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|433589754|ref|YP_007279250.1| - 0.00026 20.9 0.0 0.00054 19.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|433589754|ref|YP_007279250.1| - 0.00046 20.0 0.1 0.00093 19.0 0.1 1.5 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|433589754|ref|YP_007279250.1| - 0.0037 17.2 0.1 0.011 15.7 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.6 gi|433589754|ref|YP_007279250.1| - 0.013 15.4 0.1 0.047 13.7 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|433589754|ref|YP_007279250.1| - 0.02 14.8 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|433589754|ref|YP_007279250.1| - 0.035 13.7 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MASE3 PF17159.4 gi|433589755|ref|YP_007279251.1| - 0.0012 18.6 2.3 0.0014 18.3 2.3 1.1 1 0 0 1 1 1 1 Membrane-associated sensor domain Saf_2TM PF18303.1 gi|433589755|ref|YP_007279251.1| - 0.034 13.7 0.1 0.069 12.7 0.0 1.6 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain DUF2198 PF09964.9 gi|433589755|ref|YP_007279251.1| - 0.043 13.9 6.3 0.57 10.3 4.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2198) Rax2 PF12768.7 gi|433589755|ref|YP_007279251.1| - 0.18 11.2 0.8 0.21 11.0 0.8 1.1 1 0 0 1 1 1 0 Cortical protein marker for cell polarity DUF2244 PF10003.9 gi|433589755|ref|YP_007279251.1| - 0.8 9.4 5.0 0.7 9.6 4.0 1.4 1 1 0 1 1 1 0 Integral membrane protein (DUF2244) Aldo_ket_red PF00248.21 gi|433589756|ref|YP_007279252.1| - 9.1e-52 176.1 0.0 1.1e-51 175.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PqqD PF05402.12 gi|433589756|ref|YP_007279252.1| - 0.065 13.5 0.3 0.19 12.0 0.3 1.9 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) DUF3561 PF12084.8 gi|433589757|ref|YP_007279253.1| - 0.04 13.9 3.6 0.17 11.9 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3561) Hexapep PF00132.24 gi|433589758|ref|YP_007279254.1| - 7.1e-07 28.7 5.5 0.011 15.4 0.3 3.7 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|433589758|ref|YP_007279254.1| - 0.088 12.6 7.7 1.6 8.5 0.2 3.2 3 1 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase DUF1100 PF06500.11 gi|433589758|ref|YP_007279254.1| - 0.14 10.9 0.1 0.2 10.4 0.1 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1100) DZR PF12773.7 gi|433589759|ref|YP_007279255.1| - 0.0061 16.6 0.2 0.0082 16.1 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|433589759|ref|YP_007279255.1| - 0.078 12.7 6.8 0.42 10.4 6.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|433589759|ref|YP_007279255.1| - 0.1 12.0 8.7 0.3 10.5 4.6 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433589759|ref|YP_007279255.1| - 0.12 12.5 2.4 0.62 10.2 1.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain HscB_4_cys PF18256.1 gi|433589759|ref|YP_007279255.1| - 2.3 8.1 6.7 9.5 6.1 0.5 2.6 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif HalOD1 PF18545.1 gi|433589760|ref|YP_007279256.1| - 1.4e-25 89.3 0.0 2e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 TraB PF01963.17 gi|433589761|ref|YP_007279257.1| - 0.018 14.9 0.0 2.6 7.9 0.0 2.1 2 0 0 2 2 2 0 TraB family Cpn60_TCP1 PF00118.24 gi|433589762|ref|YP_007279258.1| - 1.7e-165 551.4 13.0 1.9e-165 551.2 13.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Ax_dynein_light PF10211.9 gi|433589762|ref|YP_007279258.1| - 0.16 11.9 1.1 2.6 7.9 0.1 2.6 2 1 0 2 2 2 0 Axonemal dynein light chain DDE_3 PF13358.6 gi|433589763|ref|YP_007279259.1| - 1.6e-14 53.9 0.0 1.5e-13 50.8 0.0 2.1 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|433589763|ref|YP_007279259.1| - 2.3e-11 44.1 0.3 9.4e-11 42.2 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|433589763|ref|YP_007279259.1| - 4.4e-10 39.4 0.0 1.4e-09 37.9 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433589763|ref|YP_007279259.1| - 6.7e-09 35.3 0.0 1.5e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|433589763|ref|YP_007279259.1| - 1.2e-05 24.8 0.0 8.6e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|433589763|ref|YP_007279259.1| - 2.7e-05 24.2 0.0 6.8e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|433589763|ref|YP_007279259.1| - 0.0018 18.3 0.1 0.0041 17.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|433589763|ref|YP_007279259.1| - 0.0023 17.4 0.0 0.0074 15.8 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 DDE_1 PF03184.19 gi|433589763|ref|YP_007279259.1| - 0.0027 17.4 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF746 PF05344.11 gi|433589763|ref|YP_007279259.1| - 0.016 15.1 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.6 gi|433589763|ref|YP_007279259.1| - 0.041 14.4 0.0 0.091 13.3 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.12 gi|433589763|ref|YP_007279259.1| - 0.058 13.1 0.1 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 rve PF00665.26 gi|433589763|ref|YP_007279259.1| - 0.064 13.5 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain AsnC_trans_reg PF01037.21 gi|433589764|ref|YP_007279260.1| - 1.2e-12 47.6 0.0 2.1e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|433589764|ref|YP_007279260.1| - 7.7e-11 41.4 0.1 1.4e-10 40.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433589764|ref|YP_007279260.1| - 2.2e-08 33.8 0.2 4.7e-08 32.8 0.1 1.5 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|433589764|ref|YP_007279260.1| - 2e-07 30.7 0.2 3.2e-07 30.1 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|433589764|ref|YP_007279260.1| - 8.1e-07 28.9 0.0 1.5e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|433589764|ref|YP_007279260.1| - 1.6e-06 28.1 0.1 3.2e-06 27.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|433589764|ref|YP_007279260.1| - 1.4e-05 24.7 0.0 2.9e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|433589764|ref|YP_007279260.1| - 6.9e-05 22.9 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|433589764|ref|YP_007279260.1| - 0.00026 20.8 0.3 0.00044 20.1 0.1 1.5 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|433589764|ref|YP_007279260.1| - 0.00027 20.8 0.0 0.00046 20.1 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|433589764|ref|YP_007279260.1| - 0.00052 19.6 0.1 0.001 18.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|433589764|ref|YP_007279260.1| - 0.00067 19.4 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|433589764|ref|YP_007279260.1| - 0.0008 19.2 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|433589764|ref|YP_007279260.1| - 0.0014 18.4 0.1 0.0022 17.7 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|433589764|ref|YP_007279260.1| - 0.0024 18.0 0.0 0.0044 17.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|433589764|ref|YP_007279260.1| - 0.0034 17.3 0.0 0.0063 16.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|433589764|ref|YP_007279260.1| - 0.0073 16.8 0.0 0.02 15.4 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_40 PF14493.6 gi|433589764|ref|YP_007279260.1| - 0.012 16.1 0.0 0.02 15.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.13 gi|433589764|ref|YP_007279260.1| - 0.017 15.7 0.0 0.043 14.4 0.0 1.6 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_47 PF16221.5 gi|433589764|ref|YP_007279260.1| - 0.021 14.4 0.1 0.036 13.6 0.1 1.4 1 0 0 1 1 1 0 winged helix-turn-helix HTH_36 PF13730.6 gi|433589764|ref|YP_007279260.1| - 0.027 14.4 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|433589764|ref|YP_007279260.1| - 0.034 13.9 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Cdc6_C PF09079.11 gi|433589764|ref|YP_007279260.1| - 0.035 14.1 0.0 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain Rrf2 PF02082.20 gi|433589764|ref|YP_007279260.1| - 0.043 14.1 0.0 0.086 13.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_Tnp_ISL3 PF13542.6 gi|433589764|ref|YP_007279260.1| - 0.049 13.1 0.2 0.11 12.0 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain of transposase family ISL3 DUF742 PF05331.11 gi|433589764|ref|YP_007279260.1| - 0.064 13.1 0.0 0.24 11.2 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF742) HTH_38 PF13936.6 gi|433589764|ref|YP_007279260.1| - 0.069 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_50 PF18024.1 gi|433589764|ref|YP_007279260.1| - 0.069 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|433589764|ref|YP_007279260.1| - 0.07 13.2 0.0 0.23 11.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_1 PF00126.27 gi|433589764|ref|YP_007279260.1| - 0.12 12.3 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family GerE PF00196.19 gi|433589764|ref|YP_007279260.1| - 0.13 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_34 PF13601.6 gi|433589764|ref|YP_007279260.1| - 0.14 12.3 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|433589764|ref|YP_007279260.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4_2 PF08281.12 gi|433589764|ref|YP_007279260.1| - 0.19 11.5 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|433589764|ref|YP_007279260.1| - 0.2 11.5 0.0 0.36 10.7 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Gln-synt_C PF00120.24 gi|433589765|ref|YP_007279261.1| - 9.3e-138 458.9 0.0 1.3e-137 458.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|433589765|ref|YP_007279261.1| - 1.7e-32 111.0 0.1 3.2e-32 110.1 0.1 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|433589765|ref|YP_007279261.1| - 0.0038 17.0 0.0 0.03 14.2 0.0 2.2 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain Hexapep PF00132.24 gi|433589766|ref|YP_007279262.1| - 1.9e-12 46.4 9.3 1.9e-05 24.2 1.7 4.0 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|433589766|ref|YP_007279262.1| - 5.3e-11 42.1 2.0 2.8e-08 33.4 0.3 3.1 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|433589766|ref|YP_007279262.1| - 0.0065 15.5 0.0 0.0073 15.3 0.0 1.1 1 0 0 1 1 1 1 L-fucokinase Bactofilin PF04519.13 gi|433589766|ref|YP_007279262.1| - 0.085 13.2 3.4 0.14 12.5 3.4 1.4 1 0 0 1 1 1 0 Polymer-forming cytoskeletal GCV_T PF01571.21 gi|433589769|ref|YP_007279265.1| - 1.5e-39 135.9 0.0 2.1e-39 135.4 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|433589769|ref|YP_007279265.1| - 1.9e-16 59.7 0.1 3.8e-16 58.8 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain HTH_20 PF12840.7 gi|433589770|ref|YP_007279266.1| - 0.0002 21.4 0.3 0.00025 21.0 0.3 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|433589770|ref|YP_007279266.1| - 0.016 15.1 0.0 0.021 14.7 0.0 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|433589770|ref|YP_007279266.1| - 0.02 14.6 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4972 PF16342.5 gi|433589770|ref|YP_007279266.1| - 0.029 14.1 0.2 0.044 13.5 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4972) MarR_2 PF12802.7 gi|433589770|ref|YP_007279266.1| - 0.097 12.6 0.2 0.13 12.2 0.2 1.1 1 0 0 1 1 1 0 MarR family FANCI_S1-cap PF14674.6 gi|433589770|ref|YP_007279266.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 FANCI solenoid 1 cap HypA PF01155.19 gi|433589771|ref|YP_007279267.1| - 0.16 12.0 1.0 2.4 8.2 0.0 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin PF00301.20 gi|433589771|ref|YP_007279267.1| - 0.16 12.0 2.0 0.69 10.0 0.1 2.8 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.11 gi|433589771|ref|YP_007279267.1| - 1.1 9.3 3.1 13 5.7 0.2 2.5 2 1 0 2 2 2 0 Putative transposase DNA-binding domain DUF5611 PF18446.1 gi|433589772|ref|YP_007279268.1| - 8.8e-31 106.8 0.1 1e-30 106.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) DUF2933 PF11666.8 gi|433589773|ref|YP_007279269.1| - 0.072 13.1 1.6 1.4 9.0 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2933) SDF PF00375.18 gi|433589774|ref|YP_007279270.1| - 1.1e-106 357.2 39.1 1.2e-106 357.0 39.1 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Chlor_dismutase PF06778.12 gi|433589775|ref|YP_007279271.1| - 1.2e-63 214.2 0.0 2.4e-63 213.2 0.0 1.5 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.16 gi|433589775|ref|YP_007279271.1| - 4e-09 36.4 7.6 5.7e-09 36.0 0.0 4.0 4 1 1 5 5 5 1 Antibiotic biosynthesis monooxygenase PadR PF03551.14 gi|433589776|ref|YP_007279272.1| - 1.4e-23 82.6 0.1 2.3e-23 81.9 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|433589776|ref|YP_007279272.1| - 0.067 13.1 0.0 0.17 11.8 0.0 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Peptidase_M50 PF02163.22 gi|433589777|ref|YP_007279273.1| - 5.6e-22 78.2 0.0 2.1e-21 76.3 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M50 PDZ_6 PF17820.1 gi|433589777|ref|YP_007279273.1| - 3.9e-18 65.0 2.6 9.7e-12 44.6 0.5 3.5 3 0 0 3 3 3 3 PDZ domain PDZ_2 PF13180.6 gi|433589777|ref|YP_007279273.1| - 4.2e-18 65.5 5.9 1.3e-08 35.0 0.4 3.6 2 1 1 4 4 4 3 PDZ domain Tricorn_PDZ PF14685.6 gi|433589777|ref|YP_007279273.1| - 1.6e-08 34.4 2.2 0.0024 17.8 0.1 3.6 2 1 1 3 3 3 2 Tricorn protease PDZ domain PDZ PF00595.24 gi|433589777|ref|YP_007279273.1| - 1.9e-08 34.5 1.4 4.9e-06 26.8 0.3 2.7 1 1 1 2 2 2 2 PDZ domain tRNA-synt_1f PF01921.18 gi|433589778|ref|YP_007279274.1| - 7.1e-100 334.4 0.0 9.8e-100 334.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|433589778|ref|YP_007279274.1| - 1.2e-08 34.2 0.0 1.6e-06 27.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|433589778|ref|YP_007279274.1| - 0.0015 17.9 0.0 0.0065 15.9 0.0 2.0 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.25 gi|433589778|ref|YP_007279274.1| - 0.036 13.4 0.0 6.1 6.1 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) AA_kinase PF00696.28 gi|433589779|ref|YP_007279275.1| - 6.9e-27 94.6 3.5 1e-26 94.0 3.5 1.3 1 0 0 1 1 1 1 Amino acid kinase family PGA_cap PF09587.10 gi|433589780|ref|YP_007279276.1| - 1.5e-62 211.4 0.0 2e-62 211.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap Glyco_transf_4 PF13439.6 gi|433589780|ref|YP_007279276.1| - 0.071 13.1 0.1 0.2 11.6 0.1 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 MoaE PF02391.17 gi|433589781|ref|YP_007279277.1| - 9.9e-24 83.8 0.4 2.8e-23 82.3 0.2 1.8 2 0 0 2 2 2 1 MoaE protein ANAPC16 PF17256.2 gi|433589782|ref|YP_007279278.1| - 0.099 13.0 0.0 16 5.9 0.0 2.3 2 0 0 2 2 2 0 Anaphase-promoting complex, subunit 16 Peptidase_M50 PF02163.22 gi|433589783|ref|YP_007279279.1| - 1.1e-14 54.3 10.1 4.4e-07 29.4 0.3 2.4 1 1 1 2 2 2 2 Peptidase family M50 AIRS PF00586.24 gi|433589784|ref|YP_007279280.1| - 1.9e-17 63.7 2.5 4.7e-17 62.4 2.5 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|433589784|ref|YP_007279280.1| - 6e-12 45.9 0.1 9.9e-12 45.3 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Ribosomal_S19e PF01090.19 gi|433589785|ref|YP_007279281.1| - 1.4e-44 151.1 0.0 1.6e-44 150.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e Rrf2 PF02082.20 gi|433589785|ref|YP_007279281.1| - 0.018 15.4 0.0 0.057 13.8 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator TrmB PF01978.19 gi|433589785|ref|YP_007279281.1| - 0.11 12.4 0.1 3.5 7.6 0.0 2.5 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|433589785|ref|YP_007279281.1| - 0.16 12.0 1.3 0.26 11.2 0.3 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain dsDNA_bind PF01984.20 gi|433589786|ref|YP_007279282.1| - 7e-27 93.9 14.2 8e-27 93.7 14.2 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.27 gi|433589786|ref|YP_007279282.1| - 0.011 16.2 0.1 0.016 15.7 0.1 1.7 1 1 0 1 1 1 0 PCI domain ZYG-11_interact PF05884.12 gi|433589786|ref|YP_007279282.1| - 1.4 8.3 3.9 1.6 8.1 3.9 1.0 1 0 0 1 1 1 0 Interactor of ZYG-11 ATP-synt_B PF00430.18 gi|433589786|ref|YP_007279282.1| - 2.9 8.0 14.0 5.6 7.1 14.0 1.5 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) Asn_synthase PF00733.21 gi|433589787|ref|YP_007279283.1| - 0.00022 21.0 0.1 0.00022 21.0 0.1 1.3 1 1 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|433589787|ref|YP_007279283.1| - 0.035 13.6 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|433589787|ref|YP_007279283.1| - 0.19 11.2 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Diphthamide synthase tRNA-synt_His PF13393.6 gi|433589788|ref|YP_007279284.1| - 3.9e-50 170.9 0.1 5.2e-50 170.5 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|433589788|ref|YP_007279284.1| - 1e-12 48.0 0.1 2e-12 47.1 0.1 1.4 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|433589788|ref|YP_007279284.1| - 9.3e-08 32.2 0.0 1.2e-07 31.9 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|433589788|ref|YP_007279284.1| - 0.012 15.1 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) Sulfatase PF00884.23 gi|433589790|ref|YP_007279286.1| - 4.9e-49 167.4 0.1 6.8e-49 166.9 0.1 1.2 1 0 0 1 1 1 1 Sulfatase DUF4976 PF16347.5 gi|433589790|ref|YP_007279286.1| - 1.9e-12 47.3 0.0 3e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) Phosphodiest PF01663.22 gi|433589790|ref|YP_007279286.1| - 1.8e-07 31.1 0.0 0.023 14.3 0.1 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|433589790|ref|YP_007279286.1| - 0.00089 18.0 0.2 0.0013 17.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Sulfatase_C PF14707.6 gi|433589790|ref|YP_007279286.1| - 0.045 14.5 0.0 0.12 13.1 0.0 1.7 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase DUF1501 PF07394.12 gi|433589790|ref|YP_007279286.1| - 0.12 11.4 0.1 0.73 8.8 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) DR2241 PF18069.1 gi|433589791|ref|YP_007279287.1| - 0.061 13.2 1.9 0.14 12.0 1.9 1.6 1 0 0 1 1 1 0 DR2241 stabilising domain Prok-JAB PF14464.6 gi|433589792|ref|YP_007279288.1| - 6.4e-22 77.5 0.0 7.9e-22 77.3 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|433589792|ref|YP_007279288.1| - 3.1e-08 33.6 0.0 4e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Peripla_BP_2 PF01497.18 gi|433589793|ref|YP_007279289.1| - 8e-23 81.2 0.6 1.4e-22 80.4 0.6 1.3 1 0 0 1 1 1 1 Periplasmic binding protein MoeA_N PF03453.17 gi|433589794|ref|YP_007279290.1| - 5.1e-38 130.3 3.4 8.5e-38 129.6 3.4 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|433589794|ref|YP_007279290.1| - 5e-24 84.6 0.0 9.9e-24 83.6 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|433589794|ref|YP_007279290.1| - 4.2e-23 81.5 0.0 3.8e-22 78.4 0.0 2.3 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.15 gi|433589794|ref|YP_007279290.1| - 2.1e-13 50.2 0.0 5.2e-13 49.0 0.0 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) Beta-lactamase PF00144.24 gi|433589795|ref|YP_007279291.1| - 1.6e-69 234.7 0.9 2e-69 234.4 0.9 1.0 1 0 0 1 1 1 1 Beta-lactamase DUF1272 PF06906.11 gi|433589796|ref|YP_007279292.1| - 0.0013 18.8 0.5 0.0013 18.7 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Desulfoferrod_N PF06397.12 gi|433589796|ref|YP_007279292.1| - 0.026 14.1 0.6 0.036 13.7 0.6 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-UBR PF02207.20 gi|433589796|ref|YP_007279292.1| - 0.2 11.8 4.0 1.6 8.9 0.3 2.1 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) MoeA_N PF03453.17 gi|433589797|ref|YP_007279293.1| - 1.3e-40 138.7 5.7 2.2e-40 138.0 5.7 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|433589797|ref|YP_007279293.1| - 1.1e-23 83.5 0.1 1.6e-23 82.9 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|433589797|ref|YP_007279293.1| - 1.4e-18 66.8 3.2 9e-18 64.2 0.1 3.6 3 1 0 3 3 3 1 MoeA C-terminal region (domain IV) HSP20 PF00011.21 gi|433589798|ref|YP_007279294.1| - 1.4e-12 47.7 0.0 1.6e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|433589798|ref|YP_007279294.1| - 0.0066 16.0 0.2 0.017 14.7 0.2 1.9 1 1 0 1 1 1 1 HSP20-like domain found in ArsA ABC1 PF03109.16 gi|433589799|ref|YP_007279295.1| - 7.8e-28 97.0 0.0 2.4e-27 95.4 0.0 1.8 2 0 0 2 2 2 1 ABC1 family APH PF01636.23 gi|433589799|ref|YP_007279295.1| - 7.2e-05 22.8 0.9 0.018 15.0 0.5 3.1 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|433589799|ref|YP_007279295.1| - 0.0034 16.8 0.0 0.0055 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|433589799|ref|YP_007279295.1| - 0.024 14.2 0.1 0.041 13.5 0.1 1.4 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) MR_MLE_C PF13378.6 gi|433589800|ref|YP_007279296.1| - 0.00045 19.8 0.0 0.00075 19.1 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|433589800|ref|YP_007279296.1| - 0.071 12.3 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus EFP_N PF08207.12 gi|433589801|ref|YP_007279297.1| - 3.6e-05 23.7 0.0 0.01 15.9 0.0 2.2 2 0 0 2 2 2 2 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|433589801|ref|YP_007279297.1| - 0.03 14.4 0.3 0.051 13.6 0.3 1.6 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain HetR_C PF18460.1 gi|433589801|ref|YP_007279297.1| - 0.11 12.4 0.6 15 5.6 0.3 2.2 2 0 0 2 2 2 0 Heterocyst differentiation regulator C-terminal Hood domain Arginase PF00491.21 gi|433589802|ref|YP_007279298.1| - 5.3e-56 190.2 0.4 6.5e-56 189.9 0.4 1.1 1 0 0 1 1 1 1 Arginase family NUDIX PF00293.28 gi|433589803|ref|YP_007279299.1| - 1.2e-18 67.4 1.3 1.7e-18 66.9 1.3 1.1 1 0 0 1 1 1 1 NUDIX domain ADH_zinc_N PF00107.26 gi|433589807|ref|YP_007279303.1| - 1.5e-31 109.1 0.1 2.1e-31 108.6 0.1 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|433589807|ref|YP_007279303.1| - 1.5e-24 87.5 0.1 4.3e-24 86.1 0.1 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|433589807|ref|YP_007279303.1| - 1.4e-13 50.7 0.2 9e-12 44.9 0.1 2.5 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain Glu_dehyd_C PF16912.5 gi|433589807|ref|YP_007279303.1| - 0.0034 16.9 0.1 0.0047 16.4 0.1 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus adh_short PF00106.25 gi|433589807|ref|YP_007279303.1| - 0.031 13.7 0.2 0.049 13.1 0.2 1.3 1 0 0 1 1 1 0 short chain dehydrogenase ADH_N_2 PF16884.5 gi|433589807|ref|YP_007279303.1| - 0.064 13.2 0.1 0.17 11.8 0.1 1.7 1 1 0 1 1 1 0 N-terminal domain of oxidoreductase tRNA-synt_2b PF00587.25 gi|433589808|ref|YP_007279304.1| - 4.3e-22 78.9 0.0 8.8e-22 77.9 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.11 gi|433589808|ref|YP_007279304.1| - 1.6e-19 69.9 0.1 3.6e-19 68.7 0.1 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal HGTP_anticodon PF03129.20 gi|433589808|ref|YP_007279304.1| - 2e-17 63.1 0.2 3.9e-17 62.2 0.2 1.5 1 0 0 1 1 1 1 Anticodon binding domain GATase_2 PF00310.21 gi|433589809|ref|YP_007279305.1| - 4.4e-155 516.5 0.0 6.1e-155 516.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|433589809|ref|YP_007279305.1| - 4.4e-151 503.2 0.2 8.9e-150 498.9 0.0 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|433589809|ref|YP_007279305.1| - 7.8e-116 386.4 0.0 2.7e-115 384.7 0.0 1.8 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 gi|433589809|ref|YP_007279305.1| - 8.3e-80 266.9 5.0 1.5e-79 266.0 5.0 1.4 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.15 gi|433589809|ref|YP_007279305.1| - 0.0014 18.1 1.0 0.0027 17.2 1.0 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|433589809|ref|YP_007279305.1| - 0.0084 15.2 5.5 0.014 14.5 3.1 2.3 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|433589809|ref|YP_007279305.1| - 0.11 11.5 1.9 0.51 9.3 1.6 2.2 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain SpoVR PF04293.13 gi|433589809|ref|YP_007279305.1| - 0.16 10.6 0.2 0.31 9.7 0.2 1.4 1 0 0 1 1 1 0 SpoVR like protein Methyltransf_11 PF08241.12 gi|433589810|ref|YP_007279306.1| - 1.3e-16 61.0 0.0 4.9e-16 59.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433589810|ref|YP_007279306.1| - 1.2e-15 58.0 0.0 3e-15 56.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433589810|ref|YP_007279306.1| - 2.1e-13 50.5 0.0 2.6e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433589810|ref|YP_007279306.1| - 6.5e-13 48.7 0.0 9.1e-13 48.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433589810|ref|YP_007279306.1| - 3.6e-08 33.0 0.0 9e-08 31.7 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|433589810|ref|YP_007279306.1| - 4.1e-07 30.7 0.0 1.2e-06 29.2 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|433589810|ref|YP_007279306.1| - 0.00038 19.8 0.0 0.00046 19.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|433589810|ref|YP_007279306.1| - 0.015 15.2 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 Hypothetical methyltransferase CMD PF02627.20 gi|433589811|ref|YP_007279307.1| - 3.2e-10 39.9 1.3 6.2e-09 35.8 0.5 2.5 1 1 1 2 2 2 2 Carboxymuconolactone decarboxylase family DUF123 PF01986.16 gi|433589812|ref|YP_007279308.1| - 3.2e-31 107.7 0.0 4.1e-31 107.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 ATPase PF06745.13 gi|433589814|ref|YP_007279310.1| - 2.6e-14 53.1 0.0 5e-14 52.2 0.0 1.4 1 1 0 1 1 1 1 KaiC Epimerase PF01370.21 gi|433589815|ref|YP_007279311.1| - 7.9e-34 117.2 0.6 1.3e-31 109.9 0.6 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|433589815|ref|YP_007279311.1| - 1.2e-11 44.9 0.0 2e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|433589815|ref|YP_007279311.1| - 2e-09 37.3 0.0 6e-06 25.9 0.0 2.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|433589815|ref|YP_007279311.1| - 1.3e-08 34.4 0.0 8.9e-05 21.8 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.19 gi|433589815|ref|YP_007279311.1| - 8.4e-08 31.6 0.0 0.0017 17.5 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|433589815|ref|YP_007279311.1| - 7.9e-05 21.9 0.1 0.018 14.2 0.1 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.13 gi|433589815|ref|YP_007279311.1| - 0.0078 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family CbiJ PF02571.14 gi|433589815|ref|YP_007279311.1| - 0.078 12.4 0.0 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 Precorrin-6x reductase CbiJ/CobK Glyco_transf_4 PF13439.6 gi|433589815|ref|YP_007279311.1| - 0.1 12.6 2.5 3 7.8 0.1 2.9 3 0 0 3 3 3 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433589815|ref|YP_007279311.1| - 0.94 9.9 7.1 0.36 11.3 0.2 2.9 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain Cyt_bd_oxida_II PF02322.15 gi|433589816|ref|YP_007279312.1| - 0.29 10.5 18.1 0.094 12.1 6.9 2.2 2 0 0 2 2 2 0 Cytochrome bd terminal oxidase subunit II DUF4164 PF13747.6 gi|433589816|ref|YP_007279312.1| - 0.79 10.0 6.9 22 5.4 5.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Fe-ADH_2 PF13685.6 gi|433589817|ref|YP_007279313.1| - 5.8e-61 206.4 2.3 7.4e-61 206.0 2.3 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|433589817|ref|YP_007279313.1| - 8.2e-23 80.8 7.5 3.6e-22 78.7 7.5 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|433589817|ref|YP_007279313.1| - 2.3e-07 30.3 0.2 6.1e-07 28.9 0.2 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase ABC2_membrane_2 PF12679.7 gi|433589818|ref|YP_007279314.1| - 2.6e-37 128.7 19.7 7.2e-36 123.9 16.0 2.0 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|433589818|ref|YP_007279314.1| - 3.6e-14 53.1 4.1 3.6e-14 53.1 4.1 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|433589818|ref|YP_007279314.1| - 3.8e-12 46.0 17.7 3.8e-12 46.0 17.7 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|433589818|ref|YP_007279314.1| - 1.4e-08 34.5 7.9 1.4e-08 34.5 7.9 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|433589818|ref|YP_007279314.1| - 5.8e-07 29.2 13.7 1e-06 28.3 13.7 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC_tran PF00005.27 gi|433589819|ref|YP_007279315.1| - 1.2e-28 100.3 0.0 2e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433589819|ref|YP_007279315.1| - 4.5e-11 43.1 0.2 1.8e-07 31.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|433589819|ref|YP_007279315.1| - 0.002 18.0 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|433589819|ref|YP_007279315.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|433589819|ref|YP_007279315.1| - 0.015 15.8 0.1 0.026 15.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF4162 PF13732.6 gi|433589819|ref|YP_007279315.1| - 0.019 15.6 0.1 0.041 14.6 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|433589819|ref|YP_007279315.1| - 0.05 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.7 gi|433589819|ref|YP_007279315.1| - 0.075 11.9 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_27 PF13514.6 gi|433589819|ref|YP_007279315.1| - 0.11 12.1 0.0 0.51 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|433589819|ref|YP_007279315.1| - 0.12 12.6 0.0 0.58 10.4 0.0 2.4 1 1 0 1 1 1 0 AAA domain Peptidase_S9 PF00326.21 gi|433589820|ref|YP_007279316.1| - 1.2e-46 158.8 0.0 2.1e-46 158.1 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|433589820|ref|YP_007279316.1| - 3e-12 46.7 0.0 6.7e-09 35.7 0.1 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|433589820|ref|YP_007279316.1| - 5.2e-12 45.8 0.0 1.5e-11 44.3 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|433589820|ref|YP_007279316.1| - 6.3e-11 42.4 0.1 3.6e-05 23.5 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|433589820|ref|YP_007279316.1| - 5.5e-08 32.4 0.0 0.0015 17.8 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 AXE1 PF05448.12 gi|433589820|ref|YP_007279316.1| - 2.2e-06 26.6 0.0 0.0004 19.2 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) PD40 PF07676.12 gi|433589820|ref|YP_007279316.1| - 1.8e-05 24.6 8.1 6.7e-05 22.7 0.2 4.5 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat Peptidase_S9_N PF02897.15 gi|433589820|ref|YP_007279316.1| - 5.7e-05 22.1 0.0 8.5e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Abhydrolase_3 PF07859.13 gi|433589820|ref|YP_007279316.1| - 0.00024 21.0 0.0 0.0099 15.7 0.0 2.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|433589820|ref|YP_007279316.1| - 0.00081 19.4 0.0 0.076 12.9 0.0 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_2 PF02230.16 gi|433589820|ref|YP_007279316.1| - 0.012 15.4 0.0 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.10 gi|433589820|ref|YP_007279316.1| - 0.027 14.6 0.0 0.056 13.6 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein Esterase PF00756.20 gi|433589820|ref|YP_007279316.1| - 0.076 12.6 0.0 0.26 10.9 0.0 1.9 2 0 0 2 2 2 0 Putative esterase Glyco_transf_4 PF13439.6 gi|433589822|ref|YP_007279318.1| - 5.1e-15 55.9 1.3 1.7e-14 54.2 0.2 2.2 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433589822|ref|YP_007279318.1| - 3e-14 53.8 5.0 3e-14 53.8 5.0 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|433589822|ref|YP_007279318.1| - 2.2e-12 46.8 0.0 3.3e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433589822|ref|YP_007279318.1| - 1.3e-09 38.6 0.0 2.8e-09 37.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|433589822|ref|YP_007279318.1| - 5.8e-05 23.1 0.0 0.00011 22.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like HIT PF01230.23 gi|433589823|ref|YP_007279319.1| - 3.9e-19 69.2 0.2 4.7e-19 68.9 0.2 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|433589823|ref|YP_007279319.1| - 3.6e-10 40.3 0.0 4.4e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|433589823|ref|YP_007279319.1| - 0.00088 19.1 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 PALP PF00291.25 gi|433589824|ref|YP_007279320.1| - 7.6e-46 156.8 0.9 8.8e-46 156.6 0.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Cons_hypoth698 PF03601.14 gi|433589825|ref|YP_007279321.1| - 2e-61 207.5 22.7 2.5e-61 207.2 22.7 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 698 PAP2 PF01569.21 gi|433589827|ref|YP_007279323.1| - 1.8e-20 73.1 2.9 1.8e-20 73.1 2.9 2.6 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|433589827|ref|YP_007279323.1| - 3.1e-10 40.0 11.8 3.1e-10 40.0 11.8 2.2 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|433589827|ref|YP_007279323.1| - 0.00036 21.0 1.5 0.0011 19.5 1.5 1.7 1 0 0 1 1 1 1 PAP2 superfamily C-terminal DUF1611_N PF17396.2 gi|433589827|ref|YP_007279323.1| - 0.15 12.3 0.1 0.31 11.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain Mfa1 PF17445.2 gi|433589828|ref|YP_007279324.1| - 1.2 9.2 6.8 0.96 9.5 4.0 2.3 2 0 0 2 2 2 0 Mating factor A1 Sulfatase PF00884.23 gi|433589829|ref|YP_007279325.1| - 5.1e-50 170.6 0.0 6.6e-50 170.3 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|433589829|ref|YP_007279325.1| - 1.2e-11 44.8 2.5 2.4e-10 40.5 2.5 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.12 gi|433589829|ref|YP_007279325.1| - 0.044 12.8 0.2 0.16 11.0 0.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1501) FAD_binding_7 PF03441.14 gi|433589829|ref|YP_007279325.1| - 0.2 11.1 0.0 0.37 10.2 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain of DNA photolyase HSP20 PF00011.21 gi|433589830|ref|YP_007279326.1| - 0.074 13.2 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Hsp20/alpha crystallin family PSII_BNR PF14870.6 gi|433589831|ref|YP_007279327.1| - 2.1e-07 30.5 0.1 0.00058 19.2 0.0 2.5 2 1 0 2 2 2 2 Photosynthesis system II assembly factor YCF48 Hydrolase PF00702.26 gi|433589832|ref|YP_007279328.1| - 3.1e-38 132.2 7.8 7e-38 131.0 7.8 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|433589832|ref|YP_007279328.1| - 1e-37 129.5 2.2 2.7e-37 128.0 2.2 1.7 1 0 0 1 1 1 1 E1-E2 ATPase HMA PF00403.26 gi|433589832|ref|YP_007279328.1| - 2.3e-10 40.7 0.0 1e-09 38.7 0.0 2.2 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|433589832|ref|YP_007279328.1| - 0.0058 16.4 0.5 0.014 15.1 0.8 1.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433589832|ref|YP_007279328.1| - 0.019 15.4 3.8 0.58 10.5 3.7 2.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase MFS_1 PF07690.16 gi|433589833|ref|YP_007279329.1| - 4.7e-33 114.6 66.7 1.6e-30 106.2 42.0 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|433589833|ref|YP_007279329.1| - 2e-06 26.6 12.9 1.1e-05 24.2 1.0 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|433589833|ref|YP_007279329.1| - 6e-06 25.4 0.6 0.54 9.0 0.1 3.1 2 1 0 3 3 3 3 MFS_1 like family ATG22 PF11700.8 gi|433589833|ref|YP_007279329.1| - 0.0066 15.1 2.9 0.59 8.7 0.1 2.4 1 1 1 2 2 2 2 Vacuole effluxer Atg22 like LacY_symp PF01306.19 gi|433589833|ref|YP_007279329.1| - 0.015 14.1 5.0 0.11 11.3 3.1 2.6 2 1 0 2 2 2 0 LacY proton/sugar symporter OATP PF03137.20 gi|433589833|ref|YP_007279329.1| - 0.091 11.0 5.2 0.87 7.8 0.0 3.3 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Sugar_tr PF00083.24 gi|433589833|ref|YP_007279329.1| - 9.8 4.9 33.8 12 4.6 11.8 3.0 2 1 0 2 2 2 0 Sugar (and other) transporter DUF393 PF04134.12 gi|433589834|ref|YP_007279330.1| - 1.8e-14 55.0 0.4 2.1e-14 54.8 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 Aldolase_II PF00596.21 gi|433589834|ref|YP_007279330.1| - 0.041 13.8 0.0 0.049 13.6 0.0 1.1 1 0 0 1 1 1 0 Class II Aldolase and Adducin N-terminal domain HTH_20 PF12840.7 gi|433589835|ref|YP_007279331.1| - 8.4e-11 41.8 1.1 1.4e-10 41.0 0.5 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|433589835|ref|YP_007279331.1| - 3.3e-09 36.5 0.0 6.3e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|433589835|ref|YP_007279331.1| - 1.2e-05 25.1 0.0 2.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433589835|ref|YP_007279331.1| - 1.3e-05 25.0 0.1 2.7e-05 23.9 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|433589835|ref|YP_007279331.1| - 5.7e-05 22.8 1.6 8.6e-05 22.3 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433589835|ref|YP_007279331.1| - 0.00011 21.7 0.0 0.00021 20.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|433589835|ref|YP_007279331.1| - 0.0021 18.5 0.0 0.0047 17.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|433589835|ref|YP_007279331.1| - 0.0046 16.7 0.0 0.0088 15.8 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|433589835|ref|YP_007279331.1| - 0.012 15.5 0.0 0.031 14.2 0.0 1.7 1 0 0 1 1 1 0 HTH domain MarR PF01047.22 gi|433589835|ref|YP_007279331.1| - 0.015 15.2 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|433589835|ref|YP_007279331.1| - 0.028 14.4 0.0 0.1 12.6 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|433589835|ref|YP_007279331.1| - 0.1 12.8 0.0 0.3 11.3 0.0 1.8 1 1 1 2 2 2 0 Winged helix DNA-binding domain VRR_NUC PF08774.11 gi|433589837|ref|YP_007279333.1| - 0.12 12.5 0.0 0.44 10.6 0.0 1.9 2 0 0 2 2 2 0 VRR-NUC domain LexA_DNA_bind PF01726.16 gi|433589838|ref|YP_007279334.1| - 0.0061 16.3 0.0 0.0095 15.7 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_27 PF13463.6 gi|433589838|ref|YP_007279334.1| - 0.058 13.9 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|433589838|ref|YP_007279334.1| - 0.064 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|433589838|ref|YP_007279334.1| - 0.11 12.5 0.0 0.18 11.7 0.0 1.3 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_24 PF13412.6 gi|433589839|ref|YP_007279335.1| - 0.0013 18.2 0.1 0.0017 17.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433589839|ref|YP_007279335.1| - 0.0017 18.4 0.1 0.0041 17.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|433589839|ref|YP_007279335.1| - 0.0033 17.1 0.0 0.0037 17.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.7 gi|433589839|ref|YP_007279335.1| - 0.0073 16.2 0.1 0.0096 15.8 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433589839|ref|YP_007279335.1| - 0.011 15.7 2.3 0.015 15.1 0.4 2.1 2 1 1 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|433589839|ref|YP_007279335.1| - 0.02 14.9 0.1 0.028 14.4 0.1 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|433589839|ref|YP_007279335.1| - 0.025 14.7 0.1 0.037 14.1 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Mrr_N PF14338.6 gi|433589839|ref|YP_007279335.1| - 0.058 13.5 0.0 0.098 12.8 0.0 1.4 1 1 0 1 1 1 0 Mrr N-terminal domain Desulfoferrodox PF01880.18 gi|433589842|ref|YP_007279338.1| - 0.016 15.8 0.1 0.023 15.3 0.1 1.2 1 0 0 1 1 1 0 Desulfoferrodoxin DDE_Tnp_1 PF01609.21 gi|433589843|ref|YP_007279339.1| - 4.4e-27 95.1 0.0 6.1e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433589843|ref|YP_007279339.1| - 0.0015 17.9 0.1 0.0022 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|433589843|ref|YP_007279339.1| - 0.11 10.7 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 PIRT PF15099.6 gi|433589844|ref|YP_007279340.1| - 0.021 14.4 0.2 0.023 14.3 0.2 1.1 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DDE_Tnp_IS1595 PF12762.7 gi|433589846|ref|YP_007279342.1| - 1e-22 80.8 0.0 1.7e-22 80.1 0.0 1.4 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|433589846|ref|YP_007279342.1| - 1.4e-09 37.8 0.8 1.4e-09 37.8 0.8 1.9 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|433589846|ref|YP_007279342.1| - 2.5e-06 27.1 6.8 6.9e-06 25.7 6.8 1.7 1 0 0 1 1 1 1 InsA N-terminal domain DUF2089 PF09862.9 gi|433589846|ref|YP_007279342.1| - 0.0049 16.9 0.0 0.0083 16.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn-ribbon_8 PF09723.10 gi|433589846|ref|YP_007279342.1| - 0.013 15.6 0.6 4.5 7.5 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|433589846|ref|YP_007279342.1| - 0.073 13.5 0.1 0.18 12.2 0.1 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar Auxin_inducible PF02519.14 gi|433589846|ref|YP_007279342.1| - 0.09 13.0 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Auxin responsive protein zf-C2H2_4 PF13894.6 gi|433589846|ref|YP_007279342.1| - 0.17 12.8 1.3 0.71 10.9 0.1 2.6 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.12 gi|433589846|ref|YP_007279342.1| - 0.22 11.1 2.0 0.56 9.8 2.0 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zf-Dof PF02701.15 gi|433589846|ref|YP_007279342.1| - 0.57 10.4 4.7 1.3 9.2 4.7 1.6 1 1 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.6 gi|433589846|ref|YP_007279342.1| - 3.2 8.5 7.6 6 7.6 0.7 2.8 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HalOD1 PF18545.1 gi|433589847|ref|YP_007279343.1| - 3.5e-16 59.2 0.3 4.8e-16 58.8 0.3 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 NAD_binding_2 PF03446.15 gi|433589848|ref|YP_007279344.1| - 3.3e-37 128.1 0.0 4.7e-37 127.6 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|433589848|ref|YP_007279344.1| - 6.1e-24 84.9 0.0 9e-24 84.3 0.0 1.3 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.17 gi|433589848|ref|YP_007279344.1| - 2.9e-05 24.6 0.1 4.6e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|433589848|ref|YP_007279344.1| - 7.5e-05 23.0 0.4 0.00014 22.1 0.1 1.6 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|433589848|ref|YP_007279344.1| - 8.8e-05 21.9 0.0 0.00012 21.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|433589848|ref|YP_007279344.1| - 0.00026 20.9 0.1 0.00036 20.5 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_11 PF14833.6 gi|433589848|ref|YP_007279344.1| - 0.00026 21.2 0.1 0.0049 17.1 0.0 2.6 2 1 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ADH_zinc_N PF00107.26 gi|433589848|ref|YP_007279344.1| - 0.014 15.4 0.1 0.025 14.6 0.1 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|433589848|ref|YP_007279344.1| - 0.022 14.3 0.1 0.048 13.2 0.0 1.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PAS_9 PF13426.7 gi|433589849|ref|YP_007279345.1| - 3.7e-25 88.2 0.0 1.3e-12 47.9 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|433589849|ref|YP_007279345.1| - 2.1e-22 79.5 6.1 4.2e-15 56.0 1.2 2.8 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|433589849|ref|YP_007279345.1| - 3.6e-21 75.3 0.1 1.6e-12 47.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|433589849|ref|YP_007279345.1| - 2.7e-19 69.9 5.0 3.3e-19 69.6 0.8 3.1 3 0 0 3 3 3 1 GAF domain HATPase_c PF02518.26 gi|433589849|ref|YP_007279345.1| - 2.9e-13 50.3 0.0 7e-13 49.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|433589849|ref|YP_007279345.1| - 6.6e-10 38.8 3.7 4.4e-05 23.4 0.1 3.3 4 0 0 4 4 3 2 PAS domain HATPase_c_2 PF13581.6 gi|433589849|ref|YP_007279345.1| - 3.4e-07 30.3 0.5 1.2e-06 28.4 0.0 2.2 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|433589849|ref|YP_007279345.1| - 7.8e-06 26.0 0.5 0.0042 17.2 0.0 4.0 3 2 0 3 3 3 1 PAS fold GAF PF01590.26 gi|433589849|ref|YP_007279345.1| - 1.9e-05 25.3 1.0 8.5e-05 23.2 0.1 2.6 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.12 gi|433589849|ref|YP_007279345.1| - 3.9e-05 23.9 0.0 0.18 12.1 0.0 2.6 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.24 gi|433589849|ref|YP_007279345.1| - 8.3e-05 22.7 0.0 0.00023 21.3 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|433589849|ref|YP_007279345.1| - 0.00023 21.1 0.2 0.00023 21.1 0.2 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|433589849|ref|YP_007279345.1| - 0.00037 20.1 0.1 0.00098 18.7 0.1 1.7 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase GAF_3 PF13492.6 gi|433589849|ref|YP_007279345.1| - 0.0021 18.4 0.1 0.0064 16.8 0.1 1.9 1 0 0 1 1 1 1 GAF domain SPOB_a PF14689.6 gi|433589849|ref|YP_007279345.1| - 0.0084 15.8 0.4 0.08 12.7 0.3 2.3 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_10 PF13596.6 gi|433589849|ref|YP_007279345.1| - 0.19 12.4 0.0 4.1 8.1 0.0 2.4 2 0 0 2 2 2 0 PAS domain CopD PF05425.13 gi|433589851|ref|YP_007279347.1| - 0.006 17.0 9.8 0.006 17.0 9.8 2.4 2 1 0 2 2 2 1 Copper resistance protein D YdjM PF04307.14 gi|433589852|ref|YP_007279348.1| - 0.00045 19.6 16.2 0.0031 16.9 14.7 2.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase dUTPase PF00692.19 gi|433589853|ref|YP_007279349.1| - 2.8e-13 49.7 0.0 4.5e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|433589853|ref|YP_007279349.1| - 0.006 15.4 0.0 0.0088 14.9 0.0 1.4 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Aconitase PF00330.20 gi|433589854|ref|YP_007279350.1| - 7.2e-110 368.1 0.7 4.1e-108 362.3 0.7 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|433589854|ref|YP_007279350.1| - 2.7e-21 76.3 0.0 5.4e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|433589854|ref|YP_007279350.1| - 0.013 14.2 0.0 0.019 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Barwin PF00967.17 gi|433589854|ref|YP_007279350.1| - 0.12 12.2 0.1 0.34 10.8 0.0 1.8 1 1 1 2 2 2 0 Barwin family Bac_luciferase PF00296.20 gi|433589855|ref|YP_007279351.1| - 6.8e-47 160.4 5.2 9.9e-47 159.9 5.2 1.3 1 0 0 1 1 1 1 Luciferase-like monooxygenase AAA_17 PF13207.6 gi|433589856|ref|YP_007279352.1| - 0.013 15.9 0.6 0.015 15.7 0.6 1.1 1 0 0 1 1 1 0 AAA domain Beta-Casp PF10996.8 gi|433589857|ref|YP_007279353.1| - 1.7e-12 47.6 0.0 2.8e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|433589857|ref|YP_007279353.1| - 3.4e-12 46.1 0.0 2e-11 43.6 0.0 2.1 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|433589857|ref|YP_007279353.1| - 6.7e-09 36.0 8.1 1e-08 35.4 6.6 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433589857|ref|YP_007279353.1| - 1.4e-06 27.9 0.7 5.6e-06 26.0 0.3 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|433589857|ref|YP_007279353.1| - 0.0021 17.5 0.0 0.0042 16.5 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|433589857|ref|YP_007279353.1| - 0.19 11.6 0.1 0.54 10.1 0.1 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain AsnC_trans_reg PF01037.21 gi|433589858|ref|YP_007279354.1| - 7.6e-09 35.4 0.1 1.2e-08 34.7 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|433589858|ref|YP_007279354.1| - 5.1e-07 29.1 0.1 2.9e-06 26.7 0.1 2.3 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|433589858|ref|YP_007279354.1| - 3e-06 27.0 0.0 1.4e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|433589858|ref|YP_007279354.1| - 6.1e-06 25.9 0.0 1.1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|433589858|ref|YP_007279354.1| - 1.8e-05 24.5 0.0 3.1e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433589858|ref|YP_007279354.1| - 0.00045 20.1 0.0 0.0013 18.5 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|433589858|ref|YP_007279354.1| - 0.0016 18.5 0.0 0.003 17.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|433589858|ref|YP_007279354.1| - 0.0019 18.6 0.2 0.0038 17.7 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|433589858|ref|YP_007279354.1| - 0.023 15.0 0.0 0.059 13.7 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator DUF2250 PF10007.9 gi|433589858|ref|YP_007279354.1| - 0.038 14.1 0.0 0.08 13.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) RP-C PF03428.13 gi|433589858|ref|YP_007279354.1| - 0.18 11.4 0.0 0.34 10.6 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|433589859|ref|YP_007279355.1| - 2.6e-31 108.8 0.7 4.3e-31 108.1 0.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|433589859|ref|YP_007279355.1| - 3.1e-25 89.0 0.0 2.5e-24 86.1 0.0 2.4 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433589859|ref|YP_007279355.1| - 9.5e-25 86.6 0.0 1.9e-24 85.6 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|433589859|ref|YP_007279355.1| - 7.1e-09 36.0 0.6 1.1e-08 35.4 0.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|433589859|ref|YP_007279355.1| - 0.0034 17.1 0.1 0.014 15.0 0.1 1.9 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Aminotran_3 PF00202.21 gi|433589860|ref|YP_007279356.1| - 3.8e-101 338.7 0.0 4.5e-101 338.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|433589860|ref|YP_007279356.1| - 0.011 15.0 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II DDE_Tnp_1 PF01609.21 gi|433589861|ref|YP_007279357.1| - 3.2e-10 40.0 3.3 4.9e-10 39.4 3.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433589861|ref|YP_007279357.1| - 0.17 11.9 0.5 0.48 10.5 0.3 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) AA_permease_2 PF13520.6 gi|433589862|ref|YP_007279358.1| - 7.2e-45 153.6 44.3 8.8e-45 153.3 44.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|433589862|ref|YP_007279358.1| - 1.8e-32 112.5 41.7 2.2e-32 112.3 41.7 1.1 1 0 0 1 1 1 1 Amino acid permease SHOCT PF09851.9 gi|433589863|ref|YP_007279359.1| - 2.6e-05 23.8 0.2 3.8e-05 23.3 0.2 1.3 1 0 0 1 1 1 1 Short C-terminal domain Phage_holin_3_6 PF07332.11 gi|433589863|ref|YP_007279359.1| - 0.0057 16.7 7.4 0.0074 16.3 7.4 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF4133 PF13571.6 gi|433589863|ref|YP_007279359.1| - 0.019 15.3 2.2 0.025 14.9 2.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4133) ApoL PF05461.11 gi|433589863|ref|YP_007279359.1| - 0.21 10.9 4.0 0.26 10.6 4.0 1.1 1 0 0 1 1 1 0 Apolipoprotein L CitMHS PF03600.16 gi|433589863|ref|YP_007279359.1| - 0.22 10.7 5.6 0.26 10.4 5.6 1.0 1 0 0 1 1 1 0 Citrate transporter ABC2_membrane PF01061.24 gi|433589863|ref|YP_007279359.1| - 4.6 6.6 10.4 5.6 6.3 10.4 1.0 1 0 0 1 1 1 0 ABC-2 type transporter Ribosomal_S6e PF01092.19 gi|433589866|ref|YP_007279362.1| - 9e-41 138.8 0.1 1e-40 138.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e DUF202 PF02656.15 gi|433589869|ref|YP_007279365.1| - 0.0086 16.5 3.8 0.0086 16.5 3.8 4.2 1 1 3 4 4 4 1 Domain of unknown function (DUF202) DHH PF01368.20 gi|433589870|ref|YP_007279366.1| - 0.001 19.2 0.2 0.0019 18.4 0.2 1.4 1 0 0 1 1 1 1 DHH family PGM_PMM_II PF02879.16 gi|433589870|ref|YP_007279366.1| - 0.0038 17.8 0.4 0.035 14.7 0.1 2.7 4 0 0 4 4 4 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DHHA1 PF02272.19 gi|433589870|ref|YP_007279366.1| - 0.011 16.2 0.2 0.065 13.7 0.1 2.3 2 1 0 2 2 2 0 DHHA1 domain Glyco_hydro_57 PF03065.15 gi|433589870|ref|YP_007279366.1| - 0.14 11.4 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 PrpR_N PF06506.11 gi|433589870|ref|YP_007279366.1| - 0.15 11.6 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Propionate catabolism activator Usp PF00582.26 gi|433589871|ref|YP_007279367.1| - 2.7e-33 115.5 6.2 3.1e-33 115.3 6.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|433589871|ref|YP_007279367.1| - 0.039 14.0 0.3 0.057 13.4 0.3 1.3 1 0 0 1 1 1 0 DNA photolyase Usp PF00582.26 gi|433589872|ref|YP_007279368.1| - 2.3e-13 50.9 4.2 3.6e-13 50.2 4.2 1.3 1 1 0 1 1 1 1 Universal stress protein family Acetyltransf_1 PF00583.25 gi|433589873|ref|YP_007279369.1| - 2e-18 66.7 0.0 2.7e-18 66.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|433589873|ref|YP_007279369.1| - 7.4e-11 42.3 0.0 1.9e-10 41.0 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433589873|ref|YP_007279369.1| - 4.7e-10 39.5 0.0 7.4e-10 38.8 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|433589873|ref|YP_007279369.1| - 8.2e-07 29.8 0.0 1.1e-06 29.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433589873|ref|YP_007279369.1| - 1.3e-05 25.1 0.0 2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|433589873|ref|YP_007279369.1| - 0.0076 16.4 0.0 0.013 15.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|433589873|ref|YP_007279369.1| - 0.045 13.8 0.0 0.12 12.5 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|433589873|ref|YP_007279369.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Usp PF00582.26 gi|433589874|ref|YP_007279370.1| - 5.6e-13 49.6 0.0 2.1e-11 44.5 0.0 2.0 1 1 0 1 1 1 1 Universal stress protein family Orthopox_35kD PF02250.15 gi|433589874|ref|YP_007279370.1| - 0.0029 17.3 0.0 0.0034 17.1 0.0 1.1 1 0 0 1 1 1 1 35kD major secreted virus protein Malate_DH PF12434.8 gi|433589874|ref|YP_007279370.1| - 0.11 12.6 0.8 0.19 11.7 0.8 1.3 1 0 0 1 1 1 0 Malate dehydrogenase enzyme AAA PF00004.29 gi|433589875|ref|YP_007279371.1| - 9e-39 132.9 0.0 2.1e-38 131.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|433589875|ref|YP_007279371.1| - 3.1e-08 33.3 0.1 8e-08 32.0 0.1 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|433589875|ref|YP_007279371.1| - 3.7e-05 23.8 0.0 0.00019 21.4 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|433589875|ref|YP_007279371.1| - 0.00023 21.7 0.4 0.012 16.1 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_22 PF13401.6 gi|433589875|ref|YP_007279371.1| - 0.0003 21.1 1.4 0.2 11.9 0.0 3.2 2 1 1 3 3 3 1 AAA domain AAA_2 PF07724.14 gi|433589875|ref|YP_007279371.1| - 0.0004 20.5 0.0 0.0013 18.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_7 PF12775.7 gi|433589875|ref|YP_007279371.1| - 0.0004 19.9 0.0 0.00082 18.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region RuvB_N PF05496.12 gi|433589875|ref|YP_007279371.1| - 0.00041 20.1 0.1 0.00097 18.9 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|433589875|ref|YP_007279371.1| - 0.00082 19.6 0.1 0.005 17.1 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433589875|ref|YP_007279371.1| - 0.00092 19.6 0.4 0.024 15.0 0.2 2.9 1 1 0 1 1 1 1 AAA ATPase domain DUF815 PF05673.13 gi|433589875|ref|YP_007279371.1| - 0.004 16.3 0.1 0.0073 15.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_33 PF13671.6 gi|433589875|ref|YP_007279371.1| - 0.0046 17.1 0.0 0.018 15.2 0.0 2.1 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|433589875|ref|YP_007279371.1| - 0.011 14.9 0.0 0.021 14.0 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_17 PF13207.6 gi|433589875|ref|YP_007279371.1| - 0.012 16.1 0.1 0.041 14.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|433589875|ref|YP_007279371.1| - 0.014 15.2 0.2 0.069 12.9 0.0 2.3 2 1 1 3 3 3 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|433589875|ref|YP_007279371.1| - 0.014 15.0 0.0 0.12 12.0 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|433589875|ref|YP_007279371.1| - 0.018 14.9 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|433589875|ref|YP_007279371.1| - 0.023 13.8 0.0 0.049 12.7 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.21 gi|433589875|ref|YP_007279371.1| - 0.043 13.2 0.0 0.077 12.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|433589875|ref|YP_007279371.1| - 0.047 13.6 0.3 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|433589875|ref|YP_007279371.1| - 0.053 13.9 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|433589875|ref|YP_007279371.1| - 0.054 14.0 0.0 0.55 10.7 0.0 2.2 2 0 0 2 2 2 0 ABC transporter MMR_HSR1 PF01926.23 gi|433589875|ref|YP_007279371.1| - 0.12 12.5 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ResIII PF04851.15 gi|433589875|ref|YP_007279371.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit OrfB_Zn_ribbon PF07282.11 gi|433589876|ref|YP_007279372.1| - 1.2e-22 79.6 0.2 2.1e-22 78.8 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain ALIX_LYPXL_bnd PF13949.6 gi|433589876|ref|YP_007279372.1| - 0.1 11.9 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV ParD PF09386.10 gi|433589877|ref|YP_007279373.1| - 0.064 13.6 0.0 0.065 13.6 0.0 1.0 1 0 0 1 1 1 0 Antitoxin ParD Lactamase_B_2 PF12706.7 gi|433589879|ref|YP_007279375.1| - 1.7e-18 66.9 0.9 2.2e-18 66.5 0.9 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|433589879|ref|YP_007279375.1| - 0.0002 21.4 5.0 0.00035 20.6 5.0 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Mur_ligase_M PF08245.12 gi|433589879|ref|YP_007279375.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Mur ligase middle domain eIF2_C PF09173.11 gi|433589881|ref|YP_007279377.1| - 3.7e-30 104.0 0.1 8e-30 102.9 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|433589881|ref|YP_007279377.1| - 2e-29 102.6 0.6 1.3e-28 99.9 0.6 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|433589881|ref|YP_007279377.1| - 4.2e-08 33.5 2.1 1.2e-07 32.0 2.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|433589881|ref|YP_007279377.1| - 0.0001 22.4 0.0 0.00022 21.3 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|433589881|ref|YP_007279377.1| - 0.00012 22.0 0.3 0.0099 15.8 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 gi|433589881|ref|YP_007279377.1| - 0.021 14.6 0.2 0.25 11.1 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|433589881|ref|YP_007279377.1| - 0.047 13.1 0.0 2.9 7.3 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|433589881|ref|YP_007279377.1| - 0.06 13.4 0.0 0.14 12.2 0.0 1.5 1 1 0 1 1 1 0 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|433589881|ref|YP_007279377.1| - 0.094 12.2 0.3 5.2 6.6 0.0 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B PIN_9 PF18477.1 gi|433589882|ref|YP_007279378.1| - 1.2e-39 135.3 0.3 1.3e-39 135.1 0.3 1.0 1 0 0 1 1 1 1 PIN like domain DUF188 PF02639.14 gi|433589882|ref|YP_007279378.1| - 6.3e-07 29.1 0.0 8.6e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_3 PF13470.6 gi|433589882|ref|YP_007279378.1| - 0.0052 17.5 1.0 0.0096 16.7 1.0 1.5 1 1 0 1 1 1 1 PIN domain PIN_4 PF13638.6 gi|433589882|ref|YP_007279378.1| - 0.0078 16.5 0.0 0.011 16.0 0.0 1.3 1 1 0 1 1 1 1 PIN domain PIN PF01850.21 gi|433589882|ref|YP_007279378.1| - 0.011 16.3 0.1 0.044 14.3 0.1 1.8 1 1 0 1 1 1 0 PIN domain PIN_10 PF18478.1 gi|433589882|ref|YP_007279378.1| - 0.14 12.4 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 PIN like domain SHS2_Rpb7-N PF03876.17 gi|433589883|ref|YP_007279379.1| - 1.3e-15 57.5 0.0 2e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|433589883|ref|YP_007279379.1| - 1.1e-12 48.1 0.2 2.6e-12 46.9 0.2 1.7 1 0 0 1 1 1 1 S1 RNA binding domain Spt4 PF06093.13 gi|433589884|ref|YP_007279380.1| - 8.3e-14 51.5 0.1 1e-13 51.2 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|433589884|ref|YP_007279380.1| - 0.0013 18.7 0.6 0.0016 18.4 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RRN7 PF11781.8 gi|433589884|ref|YP_007279380.1| - 0.025 14.3 4.1 0.83 9.4 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF359 PF04019.12 gi|433589885|ref|YP_007279381.1| - 9.9e-41 138.3 0.1 1.3e-40 138.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF4911 PF16256.5 gi|433589885|ref|YP_007279381.1| - 0.097 12.7 0.0 0.43 10.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4911) FAD_binding_7 PF03441.14 gi|433589886|ref|YP_007279382.1| - 1.3e-72 243.5 0.4 1.8e-72 243.1 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|433589886|ref|YP_007279382.1| - 2.3e-31 109.0 0.8 4.3e-31 108.1 0.8 1.4 1 0 0 1 1 1 1 DNA photolyase MMPL PF03176.15 gi|433589887|ref|YP_007279383.1| - 6e-30 104.3 48.7 7.4e-18 64.6 21.3 3.7 3 1 1 4 4 4 2 MMPL family Sterol-sensing PF12349.8 gi|433589887|ref|YP_007279383.1| - 6.5e-07 29.3 13.4 0.00052 19.9 2.1 2.4 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|433589887|ref|YP_007279383.1| - 4e-06 26.4 27.0 0.0014 18.0 7.8 2.7 3 0 0 3 3 3 2 Protein export membrane protein Patched PF02460.18 gi|433589887|ref|YP_007279383.1| - 0.00072 17.8 19.5 0.045 11.8 2.7 2.2 2 0 0 2 2 2 2 Patched family ACR_tran PF00873.19 gi|433589887|ref|YP_007279383.1| - 0.0019 16.0 12.9 0.0019 16.0 12.9 3.0 2 1 1 3 3 3 1 AcrB/AcrD/AcrF family DUF1129 PF06570.11 gi|433589887|ref|YP_007279383.1| - 0.005 16.4 1.9 0.005 16.4 1.9 3.3 2 2 1 3 3 3 1 Protein of unknown function (DUF1129) FAA_hydrolase PF01557.18 gi|433589889|ref|YP_007279385.1| - 3.1e-59 200.3 0.0 4.3e-59 199.8 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family HU-HIG PF18291.1 gi|433589889|ref|YP_007279385.1| - 0.0019 18.3 0.0 0.0034 17.5 0.0 1.3 1 0 0 1 1 1 1 HU domain fused to wHTH, Ig, or Glycine-rich motif Cyclase PF04199.13 gi|433589890|ref|YP_007279386.1| - 4.3e-35 120.9 0.0 6e-35 120.4 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase CitMHS PF03600.16 gi|433589891|ref|YP_007279387.1| - 8.1e-63 212.4 0.0 4.7e-62 209.9 0.0 1.8 1 1 1 2 2 2 1 Citrate transporter TrkA_C PF02080.21 gi|433589891|ref|YP_007279387.1| - 2.8e-21 75.1 0.5 7.1e-12 45.0 0.0 3.5 3 0 0 3 3 3 3 TrkA-C domain Na_sulph_symp PF00939.19 gi|433589891|ref|YP_007279387.1| - 3.3e-20 72.6 38.9 1e-12 47.9 14.6 3.0 2 1 0 3 3 3 3 Sodium:sulfate symporter transmembrane region DctM PF06808.12 gi|433589891|ref|YP_007279387.1| - 0.055 12.3 41.0 0.0052 15.7 18.6 2.3 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporter, DctM component DUF3592 PF12158.8 gi|433589891|ref|YP_007279387.1| - 0.57 10.2 5.1 5.4 7.1 0.8 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF3592) Popeye PF04831.13 gi|433589891|ref|YP_007279387.1| - 8.5 6.6 5.9 2.8 8.1 2.3 2.0 2 0 0 2 2 2 0 Popeye protein conserved region FAD_binding_3 PF01494.19 gi|433589892|ref|YP_007279388.1| - 2.9e-14 53.1 0.4 1.9e-10 40.5 0.0 2.9 3 0 0 3 3 3 2 FAD binding domain Lycopene_cycl PF05834.12 gi|433589892|ref|YP_007279388.1| - 1.8e-08 33.8 0.0 0.0041 16.2 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|433589892|ref|YP_007279388.1| - 4.3e-05 23.2 2.2 0.0094 15.6 0.1 2.8 2 1 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|433589892|ref|YP_007279388.1| - 0.00082 18.7 1.0 0.026 13.8 0.1 2.5 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|433589892|ref|YP_007279388.1| - 0.0076 15.1 0.0 0.018 13.9 0.0 1.5 2 0 0 2 2 2 1 Tryptophan halogenase FAD_oxidored PF12831.7 gi|433589892|ref|YP_007279388.1| - 0.011 15.1 0.3 0.015 14.6 0.3 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|433589892|ref|YP_007279388.1| - 0.02 13.6 0.0 0.21 10.3 0.0 2.0 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox_3 PF13738.6 gi|433589892|ref|YP_007279388.1| - 0.28 10.4 0.2 1.9 7.7 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase MatE PF01554.18 gi|433589893|ref|YP_007279389.1| - 5.9e-41 139.8 28.3 8.4e-22 77.5 11.2 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|433589893|ref|YP_007279389.1| - 6.9e-08 32.7 6.9 6.9e-08 32.7 6.9 4.4 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF389 PF04087.14 gi|433589894|ref|YP_007279390.1| - 2.1e-30 105.6 18.8 2.1e-30 105.6 18.8 1.8 3 0 0 3 3 3 1 Domain of unknown function (DUF389) Imm58 PF15581.6 gi|433589895|ref|YP_007279391.1| - 0.16 12.1 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 Immunity protein 58 LPAM_2 PF13627.6 gi|433589895|ref|YP_007279391.1| - 2.2 8.2 3.8 3.2 7.7 3.8 1.2 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Pro_Al_protease PF02983.14 gi|433589896|ref|YP_007279392.1| - 0.033 14.3 2.6 0.053 13.6 2.6 1.4 1 0 0 1 1 1 0 Alpha-lytic protease prodomain HTH_10 PF04967.12 gi|433589897|ref|YP_007279393.1| - 3.3e-17 62.0 0.0 7.6e-17 60.9 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|433589897|ref|YP_007279393.1| - 9.1e-08 32.1 9.6 1.7e-07 31.3 9.6 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_psq PF05225.16 gi|433589897|ref|YP_007279393.1| - 0.00015 21.4 0.0 0.00031 20.4 0.0 1.5 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_AraC PF00165.23 gi|433589897|ref|YP_007279393.1| - 0.0015 18.6 0.0 0.0078 16.3 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_3 PF01381.22 gi|433589897|ref|YP_007279393.1| - 0.0017 18.4 0.0 0.004 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.16 gi|433589897|ref|YP_007279393.1| - 0.0036 16.8 0.3 0.0096 15.4 0.3 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Phage_CI_repr PF07022.13 gi|433589897|ref|YP_007279393.1| - 0.0051 16.9 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 gi|433589897|ref|YP_007279393.1| - 0.0065 16.0 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433589897|ref|YP_007279393.1| - 0.0083 16.0 0.0 0.021 14.7 0.0 1.7 1 0 0 1 1 1 1 MarR family TetR_N PF00440.23 gi|433589897|ref|YP_007279393.1| - 0.0099 15.7 0.0 0.027 14.2 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_23 PF13384.6 gi|433589897|ref|YP_007279393.1| - 0.015 15.1 0.0 0.032 14.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|433589897|ref|YP_007279393.1| - 0.017 15.0 0.0 0.043 13.6 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain UPF0122 PF04297.14 gi|433589897|ref|YP_007279393.1| - 0.045 14.0 0.0 0.084 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_20 PF12840.7 gi|433589897|ref|YP_007279393.1| - 0.066 13.3 0.0 0.19 11.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Cadherin_2 PF08266.12 gi|433589897|ref|YP_007279393.1| - 0.14 12.0 0.0 5.7 6.8 0.0 2.5 2 0 0 2 2 2 0 Cadherin-like HTH_18 PF12833.7 gi|433589897|ref|YP_007279393.1| - 0.54 10.6 2.5 11 6.4 0.0 3.3 3 1 0 4 4 4 0 Helix-turn-helix domain Pterin_4a PF01329.19 gi|433589898|ref|YP_007279394.1| - 3e-22 78.6 0.0 3.6e-22 78.3 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Glyoxalase PF00903.25 gi|433589901|ref|YP_007279397.1| - 3.2e-10 40.3 0.1 5.1e-10 39.6 0.1 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|433589901|ref|YP_007279397.1| - 1e-05 26.3 0.7 1.8e-05 25.4 0.7 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|433589901|ref|YP_007279397.1| - 0.013 15.5 0.0 0.032 14.2 0.0 1.6 1 1 0 1 1 1 0 Glyoxalase-like domain Cupin_2 PF07883.11 gi|433589902|ref|YP_007279398.1| - 1.3e-19 69.6 1.0 1.8e-19 69.2 1.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|433589902|ref|YP_007279398.1| - 1.1e-08 35.1 0.1 1.3e-08 34.8 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|433589902|ref|YP_007279398.1| - 2.3e-06 27.2 0.0 5.6e-06 26.0 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF861) Cupin_7 PF12973.7 gi|433589902|ref|YP_007279398.1| - 0.00034 20.5 0.1 0.00055 19.8 0.1 1.4 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_1 PF00190.22 gi|433589902|ref|YP_007279398.1| - 0.0004 20.0 0.0 0.00044 19.9 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding_2 PF14525.6 gi|433589902|ref|YP_007279398.1| - 0.0011 18.7 0.1 0.0013 18.5 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Ectoine_synth PF06339.12 gi|433589902|ref|YP_007279398.1| - 0.0023 18.1 0.0 0.0028 17.8 0.0 1.2 1 0 0 1 1 1 1 Ectoine synthase Asp_Arg_Hydrox PF05118.15 gi|433589902|ref|YP_007279398.1| - 0.0045 16.8 0.0 0.0063 16.3 0.0 1.2 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase PCO_ADO PF07847.12 gi|433589902|ref|YP_007279398.1| - 0.027 13.9 0.0 0.41 10.1 0.0 2.0 1 1 1 2 2 2 0 PCO_ADO NMT1 PF09084.11 gi|433589903|ref|YP_007279399.1| - 3.7e-14 53.2 0.0 2.1e-07 31.1 0.0 2.8 2 1 0 2 2 2 2 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|433589903|ref|YP_007279399.1| - 0.0012 18.3 0.0 0.0023 17.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_2 PF13379.6 gi|433589903|ref|YP_007279399.1| - 0.0055 16.4 0.0 1.6 8.3 0.0 2.2 2 0 0 2 2 2 2 NMT1-like family NMT1 PF09084.11 gi|433589904|ref|YP_007279400.1| - 7.1e-09 35.9 0.0 1.3e-08 35.0 0.0 1.4 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|433589904|ref|YP_007279400.1| - 0.00032 20.2 0.0 0.00061 19.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|433589904|ref|YP_007279400.1| - 0.0038 16.8 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|433589905|ref|YP_007279401.1| - 1.8e-32 113.1 0.0 2.4e-32 112.7 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|433589905|ref|YP_007279401.1| - 3e-06 27.0 0.1 4.7e-06 26.4 0.1 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 gi|433589905|ref|YP_007279401.1| - 0.0013 18.5 0.1 0.01 15.6 0.1 2.3 2 1 0 2 2 2 1 NMT1-like family HAD_2 PF13419.6 gi|433589906|ref|YP_007279402.1| - 4.3e-10 40.0 0.0 2.7e-09 37.3 0.0 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433589906|ref|YP_007279402.1| - 2.5e-05 24.7 0.0 0.0024 18.2 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433589906|ref|YP_007279402.1| - 0.00061 20.2 1.4 0.0013 19.2 1.4 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433589906|ref|YP_007279402.1| - 0.05 13.7 0.1 0.14 12.2 0.1 1.7 1 0 0 1 1 1 0 HAD-hyrolase-like NIF PF03031.18 gi|433589906|ref|YP_007279402.1| - 0.17 11.6 0.0 0.87 9.3 0.0 1.9 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase GST_N_3 PF13417.6 gi|433589908|ref|YP_007279404.1| - 1.1e-11 45.0 0.0 1.6e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|433589908|ref|YP_007279404.1| - 2.9e-05 24.3 0.0 3.6e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|433589908|ref|YP_007279404.1| - 0.00017 21.8 0.0 0.00035 20.7 0.0 1.8 1 1 1 2 2 2 1 Glutaredoxin GlutR_N PF05201.15 gi|433589909|ref|YP_007279405.1| - 2.8e-34 118.0 0.2 6.3e-34 116.8 0.0 1.7 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|433589909|ref|YP_007279405.1| - 1.5e-33 115.8 0.5 3e-33 114.8 0.5 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|433589909|ref|YP_007279405.1| - 5.4e-21 74.8 3.6 1.2e-20 73.8 3.6 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Glu_dehyd_C PF16912.5 gi|433589909|ref|YP_007279405.1| - 2e-07 30.7 2.3 5.5e-07 29.3 0.5 2.4 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus OCD_Mu_crystall PF02423.15 gi|433589909|ref|YP_007279405.1| - 1.7e-06 27.2 1.0 4.1e-06 25.9 1.0 1.6 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.17 gi|433589909|ref|YP_007279405.1| - 8e-06 26.4 1.6 1.7e-05 25.3 0.2 2.4 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|433589909|ref|YP_007279405.1| - 4.9e-05 23.6 0.4 0.00021 21.5 0.1 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|433589909|ref|YP_007279405.1| - 0.00013 21.4 0.1 0.00024 20.5 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|433589909|ref|YP_007279405.1| - 0.00013 22.3 0.8 0.00047 20.5 0.8 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|433589909|ref|YP_007279405.1| - 0.00071 19.8 0.3 0.00071 19.8 0.3 2.6 3 1 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain AdoHcyase_NAD PF00670.21 gi|433589909|ref|YP_007279405.1| - 0.0015 18.6 0.1 0.0035 17.4 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiF PF00899.21 gi|433589909|ref|YP_007279405.1| - 0.011 15.1 0.4 0.03 13.7 0.2 1.8 1 1 1 2 2 2 0 ThiF family THF_DHG_CYH_C PF02882.19 gi|433589909|ref|YP_007279405.1| - 0.017 14.4 1.0 0.93 8.8 0.2 3.2 2 2 1 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ApbA PF02558.16 gi|433589909|ref|YP_007279405.1| - 0.032 13.9 0.0 0.077 12.6 0.0 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|433589910|ref|YP_007279406.1| - 2.7e-24 85.6 0.0 5.3e-24 84.7 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|433589910|ref|YP_007279406.1| - 3.9e-06 26.2 0.0 1.2e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central NAD_binding_3 PF03447.16 gi|433589910|ref|YP_007279406.1| - 0.019 15.6 0.2 0.046 14.4 0.1 1.7 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|433589910|ref|YP_007279406.1| - 0.022 15.0 0.1 0.28 11.4 0.0 2.2 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|433589910|ref|YP_007279406.1| - 0.035 14.4 0.3 0.15 12.3 0.3 2.0 1 1 0 1 1 1 0 TrkA-N domain Titin_Z PF09042.11 gi|433589910|ref|YP_007279406.1| - 7.6 6.6 10.2 5.8 7.0 4.5 2.5 2 0 0 2 2 2 0 Titin Z AsnC_trans_reg2 PF17805.1 gi|433589911|ref|YP_007279407.1| - 3.6e-50 168.0 0.7 3.6e-24 84.7 0.1 2.5 2 0 0 2 2 2 2 AsnC-like ligand binding domain ACT PF01842.25 gi|433589911|ref|YP_007279407.1| - 0.14 11.9 0.1 1.2 9.0 0.1 2.5 3 0 0 3 3 3 0 ACT domain Nif11 PF07862.11 gi|433589912|ref|YP_007279408.1| - 0.027 14.8 0.1 0.12 12.7 0.0 2.2 3 0 0 3 3 3 0 Nif11 domain Prenyltransf PF01255.19 gi|433589913|ref|YP_007279409.1| - 2.4e-64 216.9 0.0 3e-64 216.6 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.19 gi|433589915|ref|YP_007279411.1| - 1.8e-23 83.2 0.0 6.5e-23 81.4 0.0 1.7 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.16 gi|433589916|ref|YP_007279412.1| - 9.8e-48 162.6 16.7 9.8e-48 162.6 16.7 3.2 2 2 0 2 2 2 1 Integral membrane protein DUF92 Toprim_4 PF13662.6 gi|433589918|ref|YP_007279414.1| - 3.2e-12 46.8 1.6 1.2e-11 44.9 0.4 2.5 2 1 1 3 3 3 1 Toprim domain Toprim_2 PF13155.6 gi|433589918|ref|YP_007279414.1| - 7.8e-07 29.4 0.1 2e-06 28.1 0.1 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|433589918|ref|YP_007279414.1| - 0.022 15.0 0.6 0.11 12.7 0.3 2.4 2 1 0 2 2 2 0 Toprim domain BAT PF15915.5 gi|433589920|ref|YP_007279416.1| - 7.7e-21 74.6 1.8 1.2e-20 74.0 1.8 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|433589920|ref|YP_007279416.1| - 9.4e-16 57.4 0.0 1.6e-15 56.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_3 PF01381.22 gi|433589920|ref|YP_007279416.1| - 0.00069 19.6 0.0 0.0014 18.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix TetR_N PF00440.23 gi|433589920|ref|YP_007279416.1| - 0.0007 19.3 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_AraC PF00165.23 gi|433589920|ref|YP_007279416.1| - 0.0095 16.0 0.0 0.15 12.2 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family MarR_2 PF12802.7 gi|433589920|ref|YP_007279416.1| - 0.01 15.7 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.16 gi|433589920|ref|YP_007279416.1| - 0.019 14.5 0.2 0.058 12.9 0.0 1.8 2 1 0 2 2 2 0 Sigma-70, region 4 Lig_C PF18330.1 gi|433589920|ref|YP_007279416.1| - 0.035 14.1 0.0 0.28 11.2 0.0 2.4 3 1 0 3 3 3 0 Ligase Pab1020 C-terminal region DUF746 PF05344.11 gi|433589920|ref|YP_007279416.1| - 0.084 12.7 0.0 11 5.9 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_20 PF12840.7 gi|433589920|ref|YP_007279416.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|433589920|ref|YP_007279416.1| - 0.14 12.1 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|433589920|ref|YP_007279416.1| - 0.15 12.1 0.0 0.36 10.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|433589921|ref|YP_007279417.1| - 1.4e-16 60.3 0.1 2.4e-16 59.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|433589921|ref|YP_007279417.1| - 2.4e-06 27.0 0.0 4.2e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433589921|ref|YP_007279417.1| - 4.3e-06 26.5 0.0 7.3e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433589921|ref|YP_007279417.1| - 5.2e-06 26.3 0.0 1.1e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433589921|ref|YP_007279417.1| - 0.00031 20.6 0.0 0.00077 19.3 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|433589921|ref|YP_007279417.1| - 0.0017 18.7 0.0 0.0033 17.8 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein MarR PF01047.22 gi|433589921|ref|YP_007279417.1| - 0.011 15.7 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF2513 PF10711.9 gi|433589921|ref|YP_007279417.1| - 0.016 15.5 0.0 0.025 14.9 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) BLACT_WH PF17778.1 gi|433589921|ref|YP_007279417.1| - 0.044 13.8 0.1 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain HTH_12 PF08461.10 gi|433589921|ref|YP_007279417.1| - 0.064 13.2 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Rrf2 PF02082.20 gi|433589921|ref|YP_007279417.1| - 0.069 13.5 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.19 gi|433589921|ref|YP_007279417.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain ArsR PF09824.9 gi|433589921|ref|YP_007279417.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_Crp_2 PF13545.6 gi|433589921|ref|YP_007279417.1| - 0.13 12.3 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|433589921|ref|YP_007279417.1| - 0.15 12.2 0.0 0.24 11.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Herpes_LMP1 PF05297.11 gi|433589921|ref|YP_007279417.1| - 3.8 6.6 12.2 5.5 6.1 12.2 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF3311 PF11755.8 gi|433589922|ref|YP_007279418.1| - 9.6e-14 51.1 19.5 1.2e-13 50.8 19.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) TRAP-gamma PF07074.12 gi|433589922|ref|YP_007279418.1| - 0.09 12.3 0.3 0.11 12.0 0.3 1.1 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) SSF PF00474.17 gi|433589923|ref|YP_007279419.1| - 6.7e-43 147.1 27.2 9.8e-43 146.5 27.2 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family TMEM141 PF15110.6 gi|433589925|ref|YP_007279421.1| - 0.97 10.0 2.6 1.7 9.3 0.1 1.9 1 1 1 2 2 2 0 TMEM141 protein family NDUF_B12 PF08122.12 gi|433589925|ref|YP_007279421.1| - 5 7.3 4.7 3.5 7.7 0.5 2.0 1 1 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family TAT_signal PF10518.9 gi|433589926|ref|YP_007279422.1| - 0.0013 18.5 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|433589926|ref|YP_007279422.1| - 0.015 14.6 0.2 0.025 13.9 0.2 1.3 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal YebO PF13974.6 gi|433589927|ref|YP_007279423.1| - 0.069 13.2 0.6 0.17 12.0 0.6 1.6 1 0 0 1 1 1 0 YebO-like protein tRNA-synt_1 PF00133.22 gi|433589928|ref|YP_007279424.1| - 8.1e-124 414.1 0.2 1.4e-122 410.0 0.2 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|433589928|ref|YP_007279424.1| - 3.1e-35 121.4 0.1 6.9e-35 120.3 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|433589928|ref|YP_007279424.1| - 3e-21 75.6 0.4 5.2e-10 38.6 0.0 3.4 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|433589928|ref|YP_007279424.1| - 2.9e-06 26.9 0.0 7.2e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|433589928|ref|YP_007279424.1| - 2.2e-05 24.0 0.0 0.0027 17.1 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain Zn-ribbon_8 PF09723.10 gi|433589928|ref|YP_007279424.1| - 0.0018 18.4 3.0 0.03 14.4 0.7 2.7 2 0 0 2 2 2 1 Zinc ribbon domain tRNA-synt_1f PF01921.18 gi|433589928|ref|YP_007279424.1| - 0.0031 16.5 0.0 0.0088 15.0 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetases class I (K) DZR PF12773.7 gi|433589928|ref|YP_007279424.1| - 0.047 13.7 0.4 2.8 8.0 0.1 2.4 2 0 0 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|433589928|ref|YP_007279424.1| - 0.13 12.3 0.6 1.8 8.6 0.1 2.4 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SpecificRecomb PF10136.9 gi|433589928|ref|YP_007279424.1| - 0.16 10.2 0.0 0.24 9.6 0.0 1.1 1 0 0 1 1 1 0 Site-specific recombinase DUF1405 PF07187.11 gi|433589929|ref|YP_007279425.1| - 9.1e-47 159.0 18.2 1.2e-46 158.6 18.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) Harakiri PF15196.6 gi|433589929|ref|YP_007279425.1| - 4.5 7.8 6.4 45 4.6 0.1 2.9 1 1 1 2 2 2 0 Activator of apoptosis harakiri SOR_SNZ PF01680.17 gi|433589930|ref|YP_007279426.1| - 1.8e-101 338.2 8.4 2.2e-101 337.9 8.4 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|433589930|ref|YP_007279426.1| - 7.1e-10 38.6 4.4 8.1e-06 25.3 0.2 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|433589930|ref|YP_007279426.1| - 0.0012 18.0 0.7 0.37 9.8 0.1 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|433589930|ref|YP_007279426.1| - 0.03 13.5 0.1 0.67 9.1 0.0 2.3 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase MttA_Hcf106 PF02416.16 gi|433589930|ref|YP_007279426.1| - 0.043 13.2 1.9 0.71 9.3 0.0 2.8 3 0 0 3 3 3 0 mttA/Hcf106 family DDE_3 PF13358.6 gi|433589932|ref|YP_007279428.1| - 1.3e-34 119.0 0.0 2.7e-34 118.0 0.0 1.6 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.6 gi|433589932|ref|YP_007279428.1| - 4.7e-21 74.2 0.0 1.2e-20 72.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.6 gi|433589932|ref|YP_007279428.1| - 1.1e-11 45.1 0.2 3.7e-11 43.5 0.2 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|433589932|ref|YP_007279428.1| - 1.3e-10 41.2 0.4 3.8e-10 39.7 0.4 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|433589932|ref|YP_007279428.1| - 4.1e-10 39.5 0.5 7.9e-10 38.6 0.3 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433589932|ref|YP_007279428.1| - 0.00011 21.9 0.0 0.00024 20.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain DDE_Tnp_ISAZ013 PF07592.11 gi|433589932|ref|YP_007279428.1| - 0.00044 19.3 0.0 0.022 13.7 0.1 2.2 2 0 0 2 2 2 1 Rhodopirellula transposase DDE domain HTH_36 PF13730.6 gi|433589932|ref|YP_007279428.1| - 0.022 14.7 0.0 0.085 12.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.16 gi|433589932|ref|YP_007279428.1| - 0.024 14.7 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 Transposase Sigma70_ECF PF07638.11 gi|433589932|ref|YP_007279428.1| - 0.026 14.4 0.1 0.067 13.1 0.0 1.7 2 0 0 2 2 2 0 ECF sigma factor HTH_Tnp_Tc3_2 PF01498.18 gi|433589932|ref|YP_007279428.1| - 0.042 14.1 0.0 0.13 12.5 0.0 1.8 2 0 0 2 2 2 0 Transposase SMC_ScpB PF04079.16 gi|433589932|ref|YP_007279428.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB HTH_3 PF01381.22 gi|433589932|ref|YP_007279428.1| - 0.43 10.7 1.3 3.9 7.6 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix GHMP_kinases_N PF00288.26 gi|433589933|ref|YP_007279429.1| - 1.3e-14 54.2 4.5 2e-14 53.6 2.1 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|433589933|ref|YP_007279429.1| - 8.5e-08 32.5 0.0 2.1e-07 31.2 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal MCPsignal PF00015.21 gi|433589934|ref|YP_007279430.1| - 6.9e-30 104.1 68.9 2.3e-29 102.4 32.4 4.9 1 1 4 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|433589934|ref|YP_007279430.1| - 9.1e-08 32.3 41.0 0.00024 21.3 2.2 6.5 3 2 4 7 7 7 4 Bacterial protein of unknown function (DUF948) HAMP PF00672.25 gi|433589934|ref|YP_007279430.1| - 9.5e-08 32.3 16.8 2.5e-07 31.0 0.3 4.8 5 1 0 5 5 4 2 HAMP domain DUF1664 PF07889.12 gi|433589934|ref|YP_007279430.1| - 0.0039 17.2 40.9 0.01 15.8 3.6 6.4 3 2 4 7 7 7 2 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|433589934|ref|YP_007279430.1| - 0.017 15.1 50.6 0.018 15.1 3.2 5.4 3 2 2 5 5 5 0 Laminin Domain II DUF3185 PF11381.8 gi|433589934|ref|YP_007279430.1| - 0.094 12.7 0.2 0.094 12.7 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) Syntaxin_2 PF14523.6 gi|433589934|ref|YP_007279430.1| - 0.35 11.3 22.0 0.81 10.1 2.6 5.3 2 1 1 4 4 4 0 Syntaxin-like protein Spc7 PF08317.11 gi|433589934|ref|YP_007279430.1| - 0.68 8.8 60.0 0.016 14.1 11.6 4.6 2 2 2 4 4 4 0 Spc7 kinetochore protein HMMR_N PF15905.5 gi|433589934|ref|YP_007279430.1| - 1.4 8.3 51.7 0.018 14.5 9.4 4.1 1 1 3 4 4 4 0 Hyaluronan mediated motility receptor N-terminal Seryl_tRNA_N PF02403.22 gi|433589934|ref|YP_007279430.1| - 3 8.1 50.7 4.2 7.6 8.4 6.0 2 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain BAR_3 PF16746.5 gi|433589934|ref|YP_007279430.1| - 6.6 6.4 25.6 2.1 8.0 9.1 3.0 3 0 0 3 3 3 0 BAR domain of APPL family Peripla_BP_6 PF13458.6 gi|433589935|ref|YP_007279431.1| - 2.6e-46 158.9 6.1 3.4e-46 158.5 6.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|433589935|ref|YP_007279431.1| - 9.8e-20 70.9 0.0 2.9e-19 69.4 0.0 1.6 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|433589935|ref|YP_007279431.1| - 8.9e-13 47.9 0.1 7.6e-05 21.9 0.0 3.0 2 1 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.9 gi|433589935|ref|YP_007279431.1| - 0.0004 20.1 0.5 0.00094 18.9 0.5 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_6 PF13458.6 gi|433589936|ref|YP_007279432.1| - 8.3e-40 137.5 5.4 1e-39 137.2 5.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|433589936|ref|YP_007279432.1| - 6.4e-20 71.6 0.0 1.5e-19 70.3 0.0 1.5 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|433589936|ref|YP_007279432.1| - 1.2e-09 37.6 0.4 1.1e-06 27.9 0.0 2.4 2 1 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.9 gi|433589936|ref|YP_007279432.1| - 0.00068 19.4 5.5 0.00068 19.4 5.5 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_6 PF13458.6 gi|433589937|ref|YP_007279433.1| - 8.1e-47 160.5 5.6 1.2e-46 160.0 5.6 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|433589937|ref|YP_007279433.1| - 1e-22 80.7 0.2 2.1e-21 76.4 0.2 2.0 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|433589937|ref|YP_007279433.1| - 2.3e-19 69.6 1.6 3e-18 65.9 1.6 2.4 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|433589937|ref|YP_007279433.1| - 0.0081 16.0 7.7 0.0081 16.0 7.7 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence MFS_1 PF07690.16 gi|433589938|ref|YP_007279434.1| - 1.1e-29 103.5 41.2 1.1e-29 103.5 41.2 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|433589938|ref|YP_007279434.1| - 1.6 7.5 11.5 0.63 8.8 8.7 1.7 2 0 0 2 2 2 0 MFS_1 like family Pyr_redox_2 PF07992.14 gi|433589940|ref|YP_007279436.1| - 9.4e-48 162.9 0.2 1.3e-47 162.5 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|433589940|ref|YP_007279436.1| - 4.1e-11 43.3 0.4 3.6e-05 24.2 0.0 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|433589940|ref|YP_007279436.1| - 6.1e-11 42.1 0.0 1.2e-08 34.6 0.0 2.2 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|433589940|ref|YP_007279436.1| - 4.6e-09 36.1 0.0 7.7e-08 32.1 0.0 2.6 2 0 0 2 2 2 1 Rubredoxin NAD+ reductase C-terminal domain NAD_binding_8 PF13450.6 gi|433589940|ref|YP_007279436.1| - 0.0016 18.6 0.8 0.22 11.8 0.0 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|433589940|ref|YP_007279436.1| - 0.0043 15.8 0.0 0.16 10.7 0.0 2.7 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 gi|433589940|ref|YP_007279436.1| - 0.0062 16.2 0.5 1.8 8.1 0.0 2.9 2 1 0 3 3 3 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|433589940|ref|YP_007279436.1| - 0.069 12.4 0.2 0.19 11.0 0.0 1.9 2 0 0 2 2 2 0 Thi4 family RHS_repeat PF05593.14 gi|433589940|ref|YP_007279436.1| - 0.1 13.1 1.6 0.43 11.1 0.2 2.8 3 0 0 3 3 3 0 RHS Repeat NAD_binding_9 PF13454.6 gi|433589940|ref|YP_007279436.1| - 0.32 11.0 3.1 2.7 8.0 0.0 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding DUF4081 PF13312.6 gi|433589941|ref|YP_007279437.1| - 0.12 12.6 0.3 0.16 12.1 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4081) PAS PF00989.25 gi|433589944|ref|YP_007279440.1| - 8.7e-31 106.2 0.1 8.8e-19 67.6 0.0 3.2 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|433589944|ref|YP_007279440.1| - 2e-24 85.1 0.3 6.4e-13 48.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|433589944|ref|YP_007279440.1| - 5.5e-24 84.5 10.6 9.2e-16 58.1 0.3 4.3 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|433589944|ref|YP_007279440.1| - 1.8e-23 82.7 0.0 1.7e-12 47.5 0.0 2.8 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|433589944|ref|YP_007279440.1| - 6e-12 45.4 0.5 6e-12 45.4 0.5 3.8 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 gi|433589944|ref|YP_007279440.1| - 4.6e-11 43.2 0.0 5e-10 39.9 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|433589944|ref|YP_007279440.1| - 2.4e-09 37.3 0.0 0.0031 17.8 0.0 2.8 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|433589944|ref|YP_007279440.1| - 3.9e-08 33.7 0.9 3.9e-08 33.7 0.9 2.4 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.6 gi|433589944|ref|YP_007279440.1| - 0.00041 20.3 0.2 0.0062 16.5 0.0 2.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|433589944|ref|YP_007279440.1| - 0.014 15.6 2.5 8 6.7 0.1 4.0 4 1 0 4 4 4 0 PAS fold GAF_3 PF13492.6 gi|433589944|ref|YP_007279440.1| - 0.11 12.8 0.1 2.1 8.7 0.1 2.6 1 1 0 1 1 1 0 GAF domain CPSase_L_D2 PF02786.17 gi|433589945|ref|YP_007279441.1| - 1.1e-96 322.3 0.2 3.3e-57 193.4 0.1 2.7 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|433589945|ref|YP_007279441.1| - 1.7e-24 86.5 0.1 6.3e-24 84.7 0.0 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.6 gi|433589945|ref|YP_007279441.1| - 5.6e-15 55.2 0.0 1e-07 31.7 0.0 2.8 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.22 gi|433589945|ref|YP_007279441.1| - 1.6e-12 47.3 0.1 3e-07 30.2 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|433589945|ref|YP_007279441.1| - 3.1e-12 46.5 0.1 3.2e-09 36.6 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|433589945|ref|YP_007279441.1| - 6.8e-12 45.7 0.1 1.4e-06 28.4 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Abhydrolase_6 PF12697.7 gi|433589946|ref|YP_007279442.1| - 5e-24 86.1 14.5 5.8e-24 85.9 14.5 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|433589946|ref|YP_007279442.1| - 1.7e-19 70.5 0.0 4.8e-18 65.7 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|433589946|ref|YP_007279442.1| - 8.9e-09 35.0 0.0 4.2e-08 32.8 0.0 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|433589946|ref|YP_007279442.1| - 0.013 15.6 0.0 0.019 15.1 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain DLH PF01738.18 gi|433589946|ref|YP_007279442.1| - 0.12 11.9 0.0 1.6 8.3 0.0 2.0 2 0 0 2 2 2 0 Dienelactone hydrolase family PGAP1 PF07819.13 gi|433589946|ref|YP_007279442.1| - 0.19 11.4 0.0 1.2 8.7 0.0 1.9 1 1 0 2 2 2 0 PGAP1-like protein ABC_tran PF00005.27 gi|433589948|ref|YP_007279444.1| - 3.3e-29 102.1 0.0 4.4e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433589948|ref|YP_007279444.1| - 1.8e-12 47.7 0.3 2.6e-08 34.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|433589948|ref|YP_007279444.1| - 0.0035 17.1 0.0 1.4 8.5 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|433589948|ref|YP_007279444.1| - 0.017 15.6 2.6 0.019 15.5 0.2 1.9 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|433589948|ref|YP_007279444.1| - 0.058 13.8 0.1 0.099 13.0 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|433589948|ref|YP_007279444.1| - 0.058 13.1 0.3 0.12 12.1 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|433589948|ref|YP_007279444.1| - 0.07 12.9 0.2 0.12 12.1 0.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|433589948|ref|YP_007279444.1| - 0.099 12.9 0.8 0.42 10.9 0.8 2.1 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|433589948|ref|YP_007279444.1| - 0.11 11.1 0.0 0.5 8.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|433589948|ref|YP_007279444.1| - 0.12 12.9 0.0 0.27 11.6 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|433589948|ref|YP_007279444.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPgrasp_N PF18130.1 gi|433589949|ref|YP_007279445.1| - 0.02 15.4 0.1 0.025 15.1 0.1 1.1 1 0 0 1 1 1 0 ATP-grasp N-terminal domain Cupin_2 PF07883.11 gi|433589950|ref|YP_007279446.1| - 1e-07 31.6 0.4 1.5e-07 31.0 0.4 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|433589950|ref|YP_007279446.1| - 0.031 14.2 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain AraC_binding_2 PF14525.6 gi|433589950|ref|YP_007279446.1| - 0.045 13.4 0.3 0.056 13.1 0.3 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Pterin_bind PF00809.22 gi|433589951|ref|YP_007279447.1| - 2.7e-78 263.0 3.1 4e-78 262.5 3.1 1.3 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|433589951|ref|YP_007279447.1| - 1.7e-10 41.2 0.0 3.4e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|433589951|ref|YP_007279447.1| - 7e-10 39.0 0.0 3.8e-09 36.7 0.0 2.3 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain CAT_RBD PF03123.15 gi|433589951|ref|YP_007279447.1| - 0.047 13.6 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 CAT RNA binding domain DUF5596 PF18082.1 gi|433589951|ref|YP_007279447.1| - 0.048 13.5 0.0 1.3 8.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5596) UvrD-helicase PF00580.21 gi|433589952|ref|YP_007279448.1| - 1.8e-46 159.1 0.0 2.9e-45 155.2 0.0 2.2 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|433589952|ref|YP_007279448.1| - 2.2e-25 89.8 0.0 2.6e-12 46.8 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|433589952|ref|YP_007279448.1| - 4e-25 88.9 0.0 2e-24 86.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.7 gi|433589952|ref|YP_007279448.1| - 7.4e-22 78.5 0.1 1.7e-21 77.3 0.1 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|433589952|ref|YP_007279448.1| - 2.1e-08 33.8 0.3 0.00099 18.9 0.0 3.1 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|433589952|ref|YP_007279448.1| - 4.4e-06 26.5 0.2 0.00011 22.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.6 gi|433589952|ref|YP_007279448.1| - 0.0002 21.0 0.0 0.0099 15.5 0.0 2.7 3 0 0 3 3 3 1 AAA domain Viral_helicase1 PF01443.18 gi|433589952|ref|YP_007279448.1| - 0.024 14.4 0.0 0.49 10.1 0.0 2.7 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase PDDEXK_1 PF12705.7 gi|433589953|ref|YP_007279449.1| - 1.9e-06 28.0 0.7 0.00092 19.2 0.1 2.2 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily CBS PF00571.28 gi|433589955|ref|YP_007279451.1| - 3.6e-30 104.2 7.9 1.8e-15 57.1 0.6 2.0 2 0 0 2 2 2 2 CBS domain UvrA_inter PF17760.1 gi|433589958|ref|YP_007279454.1| - 7.1e-33 113.0 1.0 3.5e-32 110.7 0.0 2.7 3 0 0 3 3 3 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|433589958|ref|YP_007279454.1| - 1.3e-30 106.0 0.2 8e-28 97.0 0.0 3.6 4 0 0 4 4 4 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|433589958|ref|YP_007279454.1| - 4.8e-21 75.7 0.0 4.9e-11 43.3 0.0 4.1 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|433589958|ref|YP_007279454.1| - 6.5e-12 45.3 0.0 0.18 11.2 0.0 4.1 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|433589958|ref|YP_007279454.1| - 1.8e-08 34.0 0.0 0.0027 17.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|433589958|ref|YP_007279454.1| - 2.5e-07 31.2 0.1 0.032 14.6 0.0 3.1 3 0 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|433589958|ref|YP_007279454.1| - 5.5e-06 26.7 0.2 0.13 12.6 0.0 3.1 3 0 0 3 3 3 2 AAA domain DnaJ_CXXCXGXG PF00684.19 gi|433589958|ref|YP_007279454.1| - 0.00014 22.2 10.0 0.0084 16.4 1.1 3.8 4 0 0 4 4 3 1 DnaJ central domain ATPase PF06745.13 gi|433589958|ref|YP_007279454.1| - 0.00021 20.7 0.1 0.11 11.8 0.0 2.8 3 0 0 3 3 3 1 KaiC AAA_25 PF13481.6 gi|433589958|ref|YP_007279454.1| - 0.00049 19.7 0.0 0.53 9.8 0.0 3.1 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|433589958|ref|YP_007279454.1| - 0.00055 19.9 0.0 1.2 9.0 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_15 PF13175.6 gi|433589958|ref|YP_007279454.1| - 0.00063 19.6 0.1 0.53 9.9 0.0 3.9 4 0 0 4 4 4 1 AAA ATPase domain APS_kinase PF01583.20 gi|433589958|ref|YP_007279454.1| - 0.00072 19.5 0.1 0.86 9.5 0.0 2.7 2 0 0 2 2 2 2 Adenylylsulphate kinase AAA_14 PF13173.6 gi|433589958|ref|YP_007279454.1| - 0.00077 19.5 0.1 0.33 11.0 0.0 3.3 4 0 0 4 4 3 1 AAA domain cobW PF02492.19 gi|433589958|ref|YP_007279454.1| - 0.00078 19.1 0.1 0.098 12.2 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|433589958|ref|YP_007279454.1| - 0.0009 19.8 0.0 1 9.9 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|433589958|ref|YP_007279454.1| - 0.0015 18.7 0.0 1.6 8.9 0.0 3.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|433589958|ref|YP_007279454.1| - 0.0017 18.9 0.2 0.9 10.0 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_21 PF13304.6 gi|433589958|ref|YP_007279454.1| - 0.0049 16.7 12.0 1.1 9.0 0.0 4.3 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF2075 PF09848.9 gi|433589958|ref|YP_007279454.1| - 0.009 15.3 0.0 4.4 6.5 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|433589958|ref|YP_007279454.1| - 0.0093 15.7 0.0 0.45 10.2 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|433589958|ref|YP_007279454.1| - 0.014 15.4 0.0 0.79 9.6 0.0 2.4 2 0 0 2 2 2 0 NACHT domain ATPase_2 PF01637.18 gi|433589958|ref|YP_007279454.1| - 0.018 15.0 0.0 7.7 6.4 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|433589958|ref|YP_007279454.1| - 0.028 14.1 0.3 1.8 8.2 0.0 3.1 3 0 0 3 3 3 0 AAA domain Zn_Tnp_IS91 PF14319.6 gi|433589958|ref|YP_007279454.1| - 0.041 13.9 2.2 2.4 8.2 0.0 3.2 3 0 0 3 3 3 0 Transposase zinc-binding domain AAA_30 PF13604.6 gi|433589958|ref|YP_007279454.1| - 0.042 13.6 0.1 3.3 7.4 0.0 2.8 3 0 0 3 3 2 0 AAA domain NB-ARC PF00931.22 gi|433589958|ref|YP_007279454.1| - 0.056 12.6 0.1 0.94 8.6 0.0 2.7 3 0 0 3 3 2 0 NB-ARC domain RNA_helicase PF00910.22 gi|433589958|ref|YP_007279454.1| - 0.062 13.7 0.0 2 8.8 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Zn-ribbon_8 PF09723.10 gi|433589958|ref|YP_007279454.1| - 0.12 12.5 15.9 5.6 7.2 1.1 4.5 4 0 0 4 4 4 0 Zinc ribbon domain BCA_ABC_TP_C PF12399.8 gi|433589958|ref|YP_007279454.1| - 0.54 10.2 3.5 3.7 7.6 0.4 3.1 3 0 0 3 3 3 0 Branched-chain amino acid ATP-binding cassette transporter DZR PF12773.7 gi|433589958|ref|YP_007279454.1| - 0.61 10.2 8.1 4.8 7.3 0.4 3.9 4 0 0 4 4 4 0 Double zinc ribbon Anti-TRAP PF15777.5 gi|433589958|ref|YP_007279454.1| - 2.2 8.3 11.1 15 5.7 0.0 4.1 4 0 0 4 4 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein zinc_ribbon_9 PF14369.6 gi|433589959|ref|YP_007279455.1| - 0.053 13.8 0.0 0.093 13.0 0.0 1.5 1 0 0 1 1 1 0 zinc-ribbon DDE_Tnp_1 PF01609.21 gi|433589960|ref|YP_007279456.1| - 4.4e-27 95.1 0.0 6.1e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433589960|ref|YP_007279456.1| - 0.0015 17.9 0.1 0.0022 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|433589960|ref|YP_007279456.1| - 0.11 10.7 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DZR PF12773.7 gi|433589961|ref|YP_007279457.1| - 0.0018 18.2 9.4 3.6 7.7 0.1 2.9 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_9 PF14369.6 gi|433589961|ref|YP_007279457.1| - 0.024 14.9 1.1 0.024 14.9 1.1 3.1 2 1 1 3 3 3 0 zinc-ribbon zf-CHY PF05495.12 gi|433589961|ref|YP_007279457.1| - 0.025 15.1 1.9 0.049 14.1 1.9 1.5 1 1 0 1 1 1 0 CHY zinc finger zf-C2HC5 PF06221.13 gi|433589961|ref|YP_007279457.1| - 0.045 13.8 4.8 0.099 12.7 0.7 2.5 2 1 1 3 3 3 0 Putative zinc finger motif, C2HC5-type RNA_POL_M_15KD PF02150.16 gi|433589961|ref|YP_007279457.1| - 0.048 13.5 3.5 0.3 11.0 0.0 3.3 3 1 1 4 4 4 0 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.19 gi|433589961|ref|YP_007279457.1| - 0.21 11.4 3.3 0.29 10.9 0.0 2.4 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|433589961|ref|YP_007279457.1| - 0.21 11.7 8.0 0.21 11.7 1.1 2.9 1 1 1 2 2 2 0 Zinc ribbon domain YhfH PF14149.6 gi|433589961|ref|YP_007279457.1| - 2.8 8.0 7.2 33 4.6 0.1 3.7 4 0 0 4 4 4 0 YhfH-like protein zf-ACC PF17848.1 gi|433589961|ref|YP_007279457.1| - 8.1 6.6 11.3 14 5.9 0.1 4.1 4 1 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-piccolo PF05715.13 gi|433589961|ref|YP_007279457.1| - 9.5 6.4 11.0 6.4 7.0 3.6 2.8 2 1 1 3 3 3 0 Piccolo Zn-finger CSD PF00313.22 gi|433589962|ref|YP_007279458.1| - 9.8e-17 60.6 0.1 1.3e-16 60.2 0.1 1.2 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain Rho_RNA_bind PF07497.12 gi|433589962|ref|YP_007279458.1| - 0.0097 15.8 0.0 0.011 15.5 0.0 1.0 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain S1-like PF14444.6 gi|433589962|ref|YP_007279458.1| - 0.058 13.3 0.6 0.13 12.3 0.6 1.7 1 1 0 1 1 1 0 S1-like Usp PF00582.26 gi|433589963|ref|YP_007279459.1| - 6.8e-10 39.6 6.8 2.1e-07 31.6 1.7 3.1 2 1 0 2 2 2 2 Universal stress protein family TrkA_N PF02254.18 gi|433589964|ref|YP_007279460.1| - 3.9e-24 85.1 1.3 3.9e-24 85.1 1.3 1.5 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|433589964|ref|YP_007279460.1| - 2e-14 53.1 3.0 2.9e-14 52.7 0.6 2.2 2 0 0 2 2 2 1 TrkA-C domain Sacchrp_dh_NADP PF03435.18 gi|433589964|ref|YP_007279460.1| - 2.3e-06 27.9 0.4 4e-06 27.1 0.4 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|433589964|ref|YP_007279460.1| - 2.9e-05 24.2 0.2 4.2e-05 23.6 0.2 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NmrA PF05368.13 gi|433589964|ref|YP_007279460.1| - 9.9e-05 22.0 0.2 0.00026 20.6 0.2 1.6 1 1 0 1 1 1 1 NmrA-like family F420_oxidored PF03807.17 gi|433589964|ref|YP_007279460.1| - 0.0002 21.9 0.1 0.00052 20.5 0.1 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|433589964|ref|YP_007279460.1| - 0.00033 20.6 0.1 0.00056 19.9 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding AlaDh_PNT_C PF01262.21 gi|433589964|ref|YP_007279460.1| - 0.0024 17.2 0.7 0.0036 16.6 0.7 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|433589964|ref|YP_007279460.1| - 0.0036 17.7 0.1 0.0059 17.0 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding DapB_N PF01113.20 gi|433589964|ref|YP_007279460.1| - 0.0094 16.1 0.3 0.017 15.3 0.3 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_8 PF13450.6 gi|433589964|ref|YP_007279460.1| - 0.033 14.4 0.0 0.15 12.4 0.0 2.1 2 1 1 3 3 3 0 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|433589964|ref|YP_007279460.1| - 0.033 14.1 0.1 0.049 13.5 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|433589964|ref|YP_007279460.1| - 0.043 13.1 0.2 0.062 12.5 0.2 1.3 1 0 0 1 1 1 0 Thi4 family XdhC_C PF13478.6 gi|433589964|ref|YP_007279460.1| - 0.066 13.7 0.1 0.11 13.0 0.1 1.6 1 1 0 1 1 1 0 XdhC Rossmann domain DAO PF01266.24 gi|433589964|ref|YP_007279460.1| - 0.1 12.1 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase PglD_N PF17836.1 gi|433589964|ref|YP_007279460.1| - 0.13 12.9 0.1 0.39 11.4 0.1 1.9 2 0 0 2 2 2 0 PglD N-terminal domain TrkH PF02386.16 gi|433589965|ref|YP_007279461.1| - 6e-71 239.4 9.4 8.8e-71 238.9 9.4 1.1 1 0 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|433589966|ref|YP_007279462.1| - 2.5e-25 89.0 1.1 4e-25 88.3 1.1 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|433589966|ref|YP_007279462.1| - 3.7e-14 52.3 0.4 2.2e-13 49.9 0.0 2.1 2 0 0 2 2 2 1 TrkA-C domain Sacchrp_dh_NADP PF03435.18 gi|433589966|ref|YP_007279462.1| - 2.1e-05 24.8 0.3 3.1e-05 24.2 0.3 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|433589966|ref|YP_007279462.1| - 3.3e-05 24.4 0.2 6.7e-05 23.4 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|433589966|ref|YP_007279462.1| - 0.0015 19.0 0.2 0.0026 18.2 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding XdhC_C PF13478.6 gi|433589966|ref|YP_007279462.1| - 0.002 18.6 0.0 0.003 18.1 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.27 gi|433589966|ref|YP_007279462.1| - 0.017 15.7 0.2 0.095 13.3 0.3 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|433589966|ref|YP_007279462.1| - 0.019 14.6 0.3 0.029 13.9 0.3 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PglD_N PF17836.1 gi|433589966|ref|YP_007279462.1| - 0.022 15.4 0.7 0.05 14.3 0.5 1.7 2 0 0 2 2 2 0 PglD N-terminal domain NAD_binding_2 PF03446.15 gi|433589966|ref|YP_007279462.1| - 0.029 14.5 0.1 0.053 13.7 0.1 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|433589966|ref|YP_007279462.1| - 0.051 13.6 0.1 0.094 12.8 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|433589966|ref|YP_007279462.1| - 0.078 12.9 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|433589966|ref|YP_007279462.1| - 0.1 12.6 0.4 0.92 9.5 0.4 2.0 1 1 1 2 2 2 0 Zinc-binding dehydrogenase NmrA PF05368.13 gi|433589966|ref|YP_007279462.1| - 0.16 11.5 0.2 0.3 10.6 0.2 1.4 1 1 0 1 1 1 0 NmrA-like family Usp PF00582.26 gi|433589967|ref|YP_007279463.1| - 2.7e-13 50.6 0.1 3.3e-13 50.4 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family CcdB PF01845.17 gi|433589967|ref|YP_007279463.1| - 0.1 12.9 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 CcdB protein CSTF2_hinge PF14327.6 gi|433589968|ref|YP_007279464.1| - 0.041 14.3 0.0 0.052 14.0 0.0 1.1 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 Phage_Cox PF10743.9 gi|433589968|ref|YP_007279464.1| - 0.18 11.9 0.0 0.29 11.3 0.0 1.3 1 0 0 1 1 1 0 Regulatory phage protein cox TrkA_C PF02080.21 gi|433589969|ref|YP_007279465.1| - 2e-10 40.3 0.2 4.6e-10 39.2 0.2 1.6 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.6 gi|433589969|ref|YP_007279465.1| - 4.7e-08 32.5 0.2 8.6e-08 31.6 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433589969|ref|YP_007279465.1| - 8.8e-07 28.7 0.4 1.7e-06 27.8 0.4 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|433589969|ref|YP_007279465.1| - 9.6e-06 25.5 0.1 2.1e-05 24.4 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|433589969|ref|YP_007279465.1| - 1.1e-05 25.2 0.0 2.4e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|433589969|ref|YP_007279465.1| - 5.3e-05 22.9 0.2 0.00063 19.4 0.1 2.3 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|433589969|ref|YP_007279465.1| - 0.00017 21.4 0.0 0.00037 20.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|433589969|ref|YP_007279465.1| - 0.00076 19.5 0.0 0.0019 18.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|433589969|ref|YP_007279465.1| - 0.0044 17.2 0.0 0.018 15.2 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|433589969|ref|YP_007279465.1| - 0.0055 17.0 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|433589969|ref|YP_007279465.1| - 0.008 16.1 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|433589969|ref|YP_007279465.1| - 0.024 14.6 0.0 0.16 12.0 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|433589969|ref|YP_007279465.1| - 0.039 13.8 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|433589969|ref|YP_007279465.1| - 0.057 13.4 0.0 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|433589969|ref|YP_007279465.1| - 0.077 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|433589969|ref|YP_007279465.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DDRGK PF09756.9 gi|433589969|ref|YP_007279465.1| - 0.21 11.2 0.0 0.31 10.6 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain GntR PF00392.21 gi|433589969|ref|YP_007279465.1| - 0.27 10.9 1.7 0.46 10.2 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Spc7 PF08317.11 gi|433589970|ref|YP_007279466.1| - 0.0062 15.5 2.5 0.01 14.8 2.5 1.3 1 1 0 1 1 1 1 Spc7 kinetochore protein CREPT PF16566.5 gi|433589970|ref|YP_007279466.1| - 0.0077 16.4 2.3 0.074 13.2 0.0 2.2 1 1 1 2 2 2 1 Cell-cycle alteration and expression-elevated protein in tumour T4SS PF07996.11 gi|433589970|ref|YP_007279466.1| - 0.025 15.0 5.6 0.037 14.5 4.5 1.7 2 0 0 2 2 2 0 Type IV secretion system proteins Spectrin PF00435.21 gi|433589970|ref|YP_007279466.1| - 0.039 14.5 3.6 13 6.4 2.8 2.6 2 1 1 3 3 3 0 Spectrin repeat CAMSAP_CC1 PF17095.5 gi|433589970|ref|YP_007279466.1| - 0.049 13.5 0.4 1 9.2 0.0 2.2 2 0 0 2 2 2 0 Spectrin-binding region of Ca2+-Calmodulin DUF848 PF05852.11 gi|433589970|ref|YP_007279466.1| - 0.054 13.6 5.7 0.54 10.4 0.1 2.1 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) DUF4559 PF15112.6 gi|433589970|ref|YP_007279466.1| - 0.072 12.8 1.4 0.12 12.0 1.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4559) Rx_N PF18052.1 gi|433589970|ref|YP_007279466.1| - 0.076 13.3 4.4 4.6 7.6 0.0 2.3 2 0 0 2 2 2 0 Rx N-terminal domain Apolipoprotein PF01442.18 gi|433589970|ref|YP_007279466.1| - 0.32 10.8 12.7 0.13 12.1 0.5 2.5 1 1 2 3 3 3 0 Apolipoprotein A1/A4/E domain TMF_TATA_bd PF12325.8 gi|433589970|ref|YP_007279466.1| - 0.55 10.5 6.6 3.5 7.9 6.4 2.1 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding SlyX PF04102.12 gi|433589970|ref|YP_007279466.1| - 1.2 9.8 6.3 5.3 7.7 0.0 2.7 3 0 0 3 3 3 0 SlyX Bap31_Bap29_C PF18035.1 gi|433589970|ref|YP_007279466.1| - 1.3 9.1 7.8 0.59 10.2 4.1 2.2 2 0 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain ABC_tran_CTD PF16326.5 gi|433589970|ref|YP_007279466.1| - 9.6 6.5 16.3 8.2 6.8 6.8 2.9 3 0 0 3 3 3 0 ABC transporter C-terminal domain Ribonuc_red_sm PF00268.21 gi|433589971|ref|YP_007279467.1| - 2.2e-07 30.7 0.1 6.5e-07 29.1 0.1 1.7 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain Aminotran_5 PF00266.19 gi|433589972|ref|YP_007279468.1| - 3.8e-52 177.5 0.0 7.5e-36 123.9 0.0 2.6 1 1 1 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|433589972|ref|YP_007279468.1| - 0.078 11.5 0.0 0.12 10.9 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Cu-oxidase_3 PF07732.15 gi|433589973|ref|YP_007279469.1| - 5.8e-09 36.0 0.0 4.1e-08 33.3 0.0 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|433589973|ref|YP_007279469.1| - 1.9e-07 30.9 0.1 2.9e-06 27.1 0.0 2.7 2 1 0 2 2 2 1 Multicopper oxidase Herpes_LMP1 PF05297.11 gi|433589974|ref|YP_007279470.1| - 0.22 10.7 3.4 0.35 10.0 3.4 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) RHH_1 PF01402.21 gi|433589976|ref|YP_007279472.1| - 0.0023 17.8 0.3 0.0037 17.1 0.3 1.4 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF892 PF05974.12 gi|433589976|ref|YP_007279472.1| - 0.043 13.8 0.1 0.044 13.8 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF892) His_biosynth PF00977.21 gi|433589977|ref|YP_007279473.1| - 0.00051 19.6 0.0 0.0013 18.3 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein QRPTase_C PF01729.19 gi|433589977|ref|YP_007279473.1| - 0.0012 18.7 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain ThiG PF05690.14 gi|433589977|ref|YP_007279473.1| - 0.014 14.8 1.3 0.018 14.4 0.1 1.7 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|433589977|ref|YP_007279473.1| - 0.03 13.3 2.2 0.078 12.0 0.5 2.0 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Ribul_P_3_epim PF00834.19 gi|433589977|ref|YP_007279473.1| - 0.17 11.3 0.0 0.44 9.9 0.0 1.6 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Glu_synthase PF01645.17 gi|433589977|ref|YP_007279473.1| - 0.17 11.0 0.2 0.31 10.1 0.2 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase TIM PF00121.18 gi|433589977|ref|YP_007279473.1| - 0.26 10.6 0.0 0.32 10.3 0.0 1.1 1 0 0 1 1 1 0 Triosephosphate isomerase Usp PF00582.26 gi|433589978|ref|YP_007279474.1| - 1.4e-31 109.9 1.1 1.5e-31 109.8 1.1 1.0 1 0 0 1 1 1 1 Universal stress protein family FAD_binding_3 PF01494.19 gi|433589979|ref|YP_007279475.1| - 1.2e-09 37.9 0.1 4.7e-09 35.9 0.1 1.8 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|433589979|ref|YP_007279475.1| - 1.8e-09 37.6 0.4 0.00028 20.6 0.0 2.7 1 1 2 3 3 3 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|433589979|ref|YP_007279475.1| - 4.4e-08 32.4 0.0 0.00048 19.1 0.0 2.5 3 0 0 3 3 3 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|433589979|ref|YP_007279475.1| - 3.4e-07 29.6 0.0 6.5e-07 28.7 0.0 1.4 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|433589979|ref|YP_007279475.1| - 4.8e-06 26.0 0.2 1.6e-05 24.3 0.2 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|433589979|ref|YP_007279475.1| - 1.8e-05 24.0 0.1 3.1e-05 23.2 0.1 1.4 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|433589979|ref|YP_007279475.1| - 2.9e-05 23.6 5.3 0.00031 20.2 3.1 2.8 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|433589979|ref|YP_007279475.1| - 0.00015 20.6 0.0 0.00094 18.0 0.2 1.9 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|433589979|ref|YP_007279475.1| - 0.00017 20.8 0.0 0.024 13.7 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|433589979|ref|YP_007279475.1| - 0.00035 19.9 0.2 0.0012 18.2 0.1 1.8 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|433589979|ref|YP_007279475.1| - 0.0023 18.1 0.2 0.0074 16.5 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|433589979|ref|YP_007279475.1| - 0.013 14.8 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|433589979|ref|YP_007279475.1| - 0.084 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|433589979|ref|YP_007279475.1| - 0.12 12.6 0.1 0.88 9.8 0.0 2.1 2 0 0 2 2 2 0 TrkA-N domain TrkA_N PF02254.18 gi|433589980|ref|YP_007279476.1| - 2.2e-44 150.4 13.0 3.7e-22 78.7 0.5 3.8 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|433589980|ref|YP_007279476.1| - 5.8e-20 70.9 0.4 3.4e-10 39.6 0.1 3.1 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.16 gi|433589980|ref|YP_007279476.1| - 0.0022 17.9 1.2 0.0042 17.0 1.2 1.4 1 0 0 1 1 1 1 Ion channel AdoHcyase_NAD PF00670.21 gi|433589980|ref|YP_007279476.1| - 0.0056 16.8 0.6 0.019 15.0 0.4 2.0 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.6 gi|433589980|ref|YP_007279476.1| - 0.048 14.1 2.5 0.088 13.3 0.5 2.3 2 1 0 2 2 2 0 Putative NAD(P)-binding HI0933_like PF03486.14 gi|433589980|ref|YP_007279476.1| - 0.25 10.0 0.4 0.39 9.4 0.4 1.3 1 0 0 1 1 1 0 HI0933-like protein Zip PF02535.22 gi|433589981|ref|YP_007279477.1| - 2e-17 63.4 19.7 6.2e-17 61.8 5.9 2.9 2 1 0 2 2 2 2 ZIP Zinc transporter Usp PF00582.26 gi|433589982|ref|YP_007279478.1| - 9.7e-32 110.4 2.6 1.1e-31 110.3 2.6 1.0 1 0 0 1 1 1 1 Universal stress protein family IlvB_leader PF08049.11 gi|433589982|ref|YP_007279478.1| - 0.61 10.1 4.1 1.4 8.9 4.1 1.6 1 0 0 1 1 1 0 IlvB leader peptide AbrB PF05145.12 gi|433589983|ref|YP_007279479.1| - 0.11 11.5 11.0 0.022 13.7 2.2 2.0 1 1 0 2 2 2 0 Transition state regulatory protein AbrB DUF3188 PF11384.8 gi|433589983|ref|YP_007279479.1| - 0.18 11.6 5.5 0.16 11.7 1.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) DUF5423 PF17461.2 gi|433589983|ref|YP_007279479.1| - 0.29 10.0 0.7 0.37 9.6 0.7 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5423) Isochorismatase PF00857.20 gi|433589984|ref|YP_007279480.1| - 3.7e-36 124.9 0.0 4.2e-36 124.7 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DUF1421 PF07223.11 gi|433589984|ref|YP_007279480.1| - 0.11 12.4 0.0 0.37 10.6 0.0 1.8 2 0 0 2 2 2 0 UBA-like domain (DUF1421) YqcI_YcgG PF08892.11 gi|433589985|ref|YP_007279481.1| - 2.2e-76 256.4 0.0 2.6e-76 256.1 0.0 1.1 1 0 0 1 1 1 1 YqcI/YcgG family DUF2071 PF09844.9 gi|433589986|ref|YP_007279482.1| - 1.3e-71 240.6 0.0 1.4e-71 240.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|433589986|ref|YP_007279482.1| - 0.0051 16.4 0.2 0.0064 16.1 0.2 1.1 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) adh_short_C2 PF13561.6 gi|433589987|ref|YP_007279483.1| - 7.6e-45 153.3 0.0 2.2e-44 151.8 0.0 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433589987|ref|YP_007279483.1| - 6.1e-42 143.3 0.0 7.4e-42 143.0 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433589987|ref|YP_007279483.1| - 6.3e-08 32.7 0.0 7.5e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433589987|ref|YP_007279483.1| - 0.0047 16.4 0.3 0.0074 15.8 0.3 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Usp PF00582.26 gi|433589988|ref|YP_007279484.1| - 8e-21 75.0 0.5 9.1e-21 74.8 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family HeH PF12949.7 gi|433589988|ref|YP_007279484.1| - 0.19 11.5 0.1 0.33 10.7 0.1 1.3 1 0 0 1 1 1 0 HeH/LEM domain Usp PF00582.26 gi|433589989|ref|YP_007279485.1| - 6.2e-16 59.2 1.5 6.7e-16 59.1 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family ROK PF00480.20 gi|433589991|ref|YP_007279487.1| - 7.1e-44 150.4 0.0 8.2e-44 150.2 0.0 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 gi|433589991|ref|YP_007279487.1| - 0.00069 19.2 1.9 0.0016 18.0 0.5 1.9 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|433589991|ref|YP_007279487.1| - 0.0058 16.2 0.0 0.029 13.9 0.0 2.0 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|433589992|ref|YP_007279488.1| - 4.7e-20 71.3 1.6 1e-19 70.2 1.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ntox15 PF15604.6 gi|433589992|ref|YP_007279488.1| - 0.56 10.3 3.0 0.51 10.5 0.1 2.2 2 0 0 2 2 2 0 Novel toxin 15 LVIVD PF08309.11 gi|433589993|ref|YP_007279489.1| - 6.5e-11 41.4 4.3 0.0037 16.5 0.3 5.8 7 0 0 7 7 7 4 LVIVD repeat SBP56 PF05694.11 gi|433589993|ref|YP_007279489.1| - 0.017 14.0 1.0 3.6 6.3 0.0 3.7 4 0 0 4 4 4 0 56kDa selenium binding protein (SBP56) DUF1513 PF07433.11 gi|433589993|ref|YP_007279489.1| - 0.032 13.3 0.0 0.049 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1513) NifU PF01106.17 gi|433589994|ref|YP_007279490.1| - 9.2e-09 35.3 0.1 1.3e-08 34.9 0.1 1.3 1 0 0 1 1 1 1 NifU-like domain DIM PF08194.12 gi|433589994|ref|YP_007279490.1| - 0.18 12.1 0.2 0.28 11.4 0.2 1.3 1 0 0 1 1 1 0 DIM protein ACT PF01842.25 gi|433589995|ref|YP_007279491.1| - 5.8e-05 22.8 0.8 0.00088 19.0 0.0 2.8 2 1 1 3 3 3 1 ACT domain TPR_4 PF07721.14 gi|433589995|ref|YP_007279491.1| - 0.029 15.0 0.3 0.099 13.3 0.2 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat Homoserine_dh PF00742.19 gi|433589996|ref|YP_007279492.1| - 4e-48 163.6 0.1 6.4e-48 162.9 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.21 gi|433589996|ref|YP_007279492.1| - 1.2e-06 28.4 0.0 2.2e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.16 gi|433589996|ref|YP_007279492.1| - 2.2e-05 25.1 0.1 5.8e-05 23.7 0.1 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|433589996|ref|YP_007279492.1| - 0.0026 18.3 0.1 0.0049 17.4 0.1 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain PglD_N PF17836.1 gi|433589996|ref|YP_007279492.1| - 0.0091 16.6 0.0 0.019 15.6 0.0 1.5 1 0 0 1 1 1 1 PglD N-terminal domain 3HCDH_N PF02737.18 gi|433589996|ref|YP_007279492.1| - 0.016 15.1 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|433589996|ref|YP_007279492.1| - 0.019 14.4 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|433589996|ref|YP_007279492.1| - 0.021 15.4 0.0 0.063 13.9 0.0 2.0 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|433589996|ref|YP_007279492.1| - 0.05 14.4 0.0 0.096 13.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold GTP_EFTU PF00009.27 gi|433589997|ref|YP_007279493.1| - 4.8e-57 192.7 0.1 6.7e-57 192.2 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|433589997|ref|YP_007279493.1| - 2.7e-37 127.5 0.0 6.8e-37 126.2 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|433589997|ref|YP_007279493.1| - 1e-15 57.9 2.4 3.7e-15 56.1 0.6 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|433589997|ref|YP_007279493.1| - 8.8e-07 29.0 0.1 5.5e-06 26.4 0.1 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|433589997|ref|YP_007279493.1| - 0.0015 18.5 1.0 0.11 12.4 0.1 2.4 1 1 1 2 2 2 1 RsgA GTPase Gtr1_RagA PF04670.12 gi|433589997|ref|YP_007279493.1| - 0.0016 17.8 0.1 0.082 12.2 0.0 2.3 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.23 gi|433589997|ref|YP_007279493.1| - 0.012 15.6 0.0 5.2 7.1 0.0 2.5 1 1 1 2 2 2 0 Dynamin family GTP_EFTU_D4 PF14578.6 gi|433589997|ref|YP_007279493.1| - 0.014 15.3 0.3 0.045 13.7 0.3 1.9 1 0 0 1 1 1 0 Elongation factor Tu domain 4 SRPRB PF09439.10 gi|433589997|ref|YP_007279493.1| - 0.018 14.4 0.0 0.88 9.0 0.0 2.3 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|433589997|ref|YP_007279493.1| - 0.02 14.4 0.1 0.46 10.0 0.1 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B Ribosomal_S10 PF00338.22 gi|433589998|ref|YP_007279494.1| - 1.3e-25 89.4 0.0 1.5e-25 89.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Rhomboid PF01694.22 gi|433589999|ref|YP_007279495.1| - 1.8e-21 76.7 10.7 1.8e-21 76.7 10.7 1.7 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|433589999|ref|YP_007279495.1| - 0.19 12.3 0.0 0.19 12.3 0.0 2.4 3 0 0 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) Acetyltransf_6 PF13480.7 gi|433590002|ref|YP_007279498.1| - 4.7e-11 43.0 4.5 4.7e-11 43.0 4.5 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB_like PF04339.12 gi|433590002|ref|YP_007279498.1| - 8e-07 28.5 0.0 0.014 14.6 0.0 2.1 2 0 0 2 2 2 2 Peptidogalycan biosysnthesis/recognition FemAB PF02388.16 gi|433590002|ref|YP_007279498.1| - 3.6e-06 26.1 0.1 8.1e-06 25.0 0.1 1.4 2 0 0 2 2 2 1 FemAB family HTH_10 PF04967.12 gi|433590003|ref|YP_007279499.1| - 5.5e-19 67.7 0.1 2.3e-18 65.7 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|433590003|ref|YP_007279499.1| - 1.3e-05 24.8 1.4 0.00012 21.7 0.2 2.9 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|433590003|ref|YP_007279499.1| - 2.2e-05 23.9 2.4 5e-05 22.7 0.2 2.8 3 1 0 3 3 3 1 Sigma-70, region 4 GerE PF00196.19 gi|433590003|ref|YP_007279499.1| - 0.00017 21.1 0.0 0.0024 17.4 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family MarR_2 PF12802.7 gi|433590003|ref|YP_007279499.1| - 0.0044 16.9 0.4 0.031 14.2 0.1 2.5 2 1 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|433590003|ref|YP_007279499.1| - 0.0063 16.6 0.0 0.016 15.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433590003|ref|YP_007279499.1| - 0.0086 15.9 0.0 0.025 14.4 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|433590003|ref|YP_007279499.1| - 0.017 15.0 0.0 0.12 12.4 0.0 2.2 2 0 0 2 2 2 0 HTH domain HTH_38 PF13936.6 gi|433590003|ref|YP_007279499.1| - 0.036 13.8 0.1 0.26 11.1 0.1 2.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|433590003|ref|YP_007279499.1| - 0.037 13.6 0.0 0.093 12.3 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HrcA_DNA-bdg PF03444.15 gi|433590003|ref|YP_007279499.1| - 0.099 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF4112 PF13430.6 gi|433590004|ref|YP_007279500.1| - 0.068 13.4 1.5 0.21 11.9 0.1 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4112) GPDPase_memb PF10110.9 gi|433590004|ref|YP_007279500.1| - 0.11 11.3 0.2 0.18 10.6 0.2 1.3 1 0 0 1 1 1 0 Membrane domain of glycerophosphoryl diester phosphodiesterase PQQ_2 PF13360.6 gi|433590005|ref|YP_007279501.1| - 4.1e-47 160.8 32.4 3.2e-26 92.4 13.1 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|433590005|ref|YP_007279501.1| - 9.3e-29 99.1 39.1 4.2e-06 27.1 0.7 8.5 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|433590005|ref|YP_007279501.1| - 2.4e-15 55.6 14.4 1.8e-05 24.4 0.0 7.4 7 0 0 7 7 7 3 PQQ enzyme repeat Ribosomal_S24e PF01282.19 gi|433590006|ref|YP_007279502.1| - 5.9e-25 87.0 0.2 7.4e-25 86.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|433590007|ref|YP_007279503.1| - 1.8e-11 44.0 2.8 2.2e-11 43.8 2.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.6 gi|433590007|ref|YP_007279503.1| - 0.00054 19.8 2.3 0.18 11.8 0.1 2.1 2 0 0 2 2 2 2 Nudix N-terminal RNA_POL_M_15KD PF02150.16 gi|433590007|ref|YP_007279503.1| - 0.0017 18.1 0.9 0.003 17.4 0.9 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zinc_ribbon_5 PF13719.6 gi|433590007|ref|YP_007279503.1| - 2.8 7.8 6.4 2.3 8.1 0.2 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Peptidase_M22 PF00814.25 gi|433590008|ref|YP_007279504.1| - 2.3e-76 257.1 0.0 3e-76 256.7 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.23 gi|433590008|ref|YP_007279504.1| - 2.8e-05 24.2 19.5 6.9e-05 22.9 16.8 2.8 2 1 0 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.14 gi|433590008|ref|YP_007279504.1| - 8.1e-05 22.1 0.0 0.00016 21.1 0.0 1.5 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.17 gi|433590008|ref|YP_007279504.1| - 0.078 12.2 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein tyrosine kinase RIO1 PF01163.22 gi|433590008|ref|YP_007279504.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 RIO1 family Complex1_49kDa PF00346.19 gi|433590010|ref|YP_007279506.1| - 2.7e-84 282.5 0.0 6.1e-83 278.0 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|433590010|ref|YP_007279506.1| - 9.2e-37 126.4 0.1 1.6e-36 125.6 0.1 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HTH_10 PF04967.12 gi|433590011|ref|YP_007279507.1| - 3.4e-17 62.0 0.0 5e-17 61.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Ham1p_like PF01725.16 gi|433590012|ref|YP_007279508.1| - 6.2e-54 182.8 0.0 7e-54 182.6 0.0 1.0 1 0 0 1 1 1 1 Ham1 family IMPDH PF00478.25 gi|433590013|ref|YP_007279509.1| - 6.9e-119 396.9 5.3 8.1e-119 396.6 5.3 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|433590013|ref|YP_007279509.1| - 1.2e-07 31.5 14.2 0.0002 20.9 10.6 2.2 1 1 1 2 2 2 2 Nitronate monooxygenase His_biosynth PF00977.21 gi|433590013|ref|YP_007279509.1| - 1.7e-06 27.7 2.2 0.00013 21.5 0.1 2.5 2 1 0 2 2 2 2 Histidine biosynthesis protein FMN_dh PF01070.18 gi|433590013|ref|YP_007279509.1| - 5.9e-06 25.5 14.7 4.2e-05 22.7 14.7 2.0 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|433590013|ref|YP_007279509.1| - 0.0015 17.7 4.4 0.0015 17.7 4.4 1.9 1 1 1 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|433590013|ref|YP_007279509.1| - 0.0036 16.6 0.9 0.0074 15.5 0.9 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|433590013|ref|YP_007279509.1| - 0.0036 16.6 4.0 0.0063 15.9 4.0 1.4 1 0 0 1 1 1 1 Thiamine monophosphate synthase QRPTase_C PF01729.19 gi|433590013|ref|YP_007279509.1| - 0.017 14.9 2.5 0.051 13.3 0.7 2.3 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Aldolase PF01081.19 gi|433590013|ref|YP_007279509.1| - 0.024 14.0 3.9 0.099 12.0 1.2 2.5 1 1 1 2 2 2 0 KDPG and KHG aldolase NanE PF04131.14 gi|433590013|ref|YP_007279509.1| - 0.089 12.0 5.2 0.59 9.3 3.8 2.8 1 1 1 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.17 gi|433590013|ref|YP_007279509.1| - 0.12 11.8 1.6 0.16 11.4 0.2 1.8 2 0 0 2 2 2 0 PcrB family IGPS PF00218.21 gi|433590013|ref|YP_007279509.1| - 0.12 11.5 0.7 0.93 8.6 0.1 2.4 2 1 1 3 3 3 0 Indole-3-glycerol phosphate synthase ThiG PF05690.14 gi|433590013|ref|YP_007279509.1| - 0.72 9.1 7.4 0.047 13.0 1.8 1.8 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG PIN_3 PF13470.6 gi|433590014|ref|YP_007279510.1| - 0.029 15.1 1.7 0.33 11.7 1.7 2.1 1 1 0 1 1 1 0 PIN domain MFS_MOT1 PF16983.5 gi|433590016|ref|YP_007279512.1| - 2.6e-39 134.1 35.2 3e-23 82.3 14.5 3.5 3 1 1 4 4 4 2 Molybdate transporter of MFS superfamily MCPsignal PF00015.21 gi|433590017|ref|YP_007279513.1| - 5.4e-29 101.2 41.3 4.2e-28 98.3 21.0 3.3 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.12 gi|433590017|ref|YP_007279513.1| - 0.0038 17.2 2.8 0.0038 17.2 2.8 4.4 2 2 3 5 5 5 2 Laminin Domain II HAMP PF00672.25 gi|433590017|ref|YP_007279513.1| - 0.0079 16.6 16.1 0.071 13.5 0.7 5.6 5 0 0 5 5 5 2 HAMP domain PhaC_N PF07167.13 gi|433590017|ref|YP_007279513.1| - 0.093 12.4 0.5 6.7 6.3 0.1 2.4 2 0 0 2 2 2 0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Gp-FAR-1 PF05823.12 gi|433590017|ref|YP_007279513.1| - 0.15 12.4 1.9 1 9.7 0.3 2.5 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) AAA_13 PF13166.6 gi|433590017|ref|YP_007279513.1| - 0.31 9.6 21.2 1.3 7.6 6.4 2.1 1 1 1 2 2 2 0 AAA domain IFT57 PF10498.9 gi|433590017|ref|YP_007279513.1| - 0.36 9.7 11.3 0.39 9.6 1.9 2.6 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 Spc7 PF08317.11 gi|433590017|ref|YP_007279513.1| - 0.46 9.3 25.6 0.2 10.5 4.7 3.6 2 1 0 3 3 3 0 Spc7 kinetochore protein Med9 PF07544.13 gi|433590017|ref|YP_007279513.1| - 0.6 10.2 6.4 4.8 7.3 0.0 4.2 4 1 0 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 DUF724 PF05266.14 gi|433590017|ref|YP_007279513.1| - 0.69 9.7 9.0 0.94 9.3 0.6 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF724) BLOC1_2 PF10046.9 gi|433590017|ref|YP_007279513.1| - 0.74 10.1 25.6 4.5 7.7 1.5 5.7 6 1 0 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.10 gi|433590017|ref|YP_007279513.1| - 1.1 9.5 10.5 13 5.9 0.3 4.5 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.12 gi|433590017|ref|YP_007279513.1| - 1.5 8.9 19.9 0.6 10.1 1.2 4.8 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) ISG65-75 PF11727.8 gi|433590017|ref|YP_007279513.1| - 4.9 6.3 25.9 0.013 14.8 2.6 3.0 2 1 1 3 3 3 0 Invariant surface glycoprotein Ferritin PF00210.24 gi|433590017|ref|YP_007279513.1| - 6.7 6.6 9.8 0.35 10.8 1.1 2.8 1 1 0 2 2 2 0 Ferritin-like domain APG6_N PF17675.1 gi|433590017|ref|YP_007279513.1| - 7 7.2 33.6 0.1 13.1 6.4 4.6 2 2 1 4 4 4 0 Apg6 coiled-coil region ERM PF00769.19 gi|433590017|ref|YP_007279513.1| - 8.9 6.0 37.3 0.84 9.4 11.5 3.1 2 1 1 3 3 3 0 Ezrin/radixin/moesin family HNOB PF07700.15 gi|433590018|ref|YP_007279514.1| - 8.1e-35 120.2 0.0 9.5e-35 120.0 0.0 1.1 1 0 0 1 1 1 1 Haem-NO-binding V4R PF02830.18 gi|433590018|ref|YP_007279514.1| - 6.5e-09 35.7 0.0 1.1e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 V4R domain MetOD1 PF18546.1 gi|433590018|ref|YP_007279514.1| - 0.029 14.3 0.0 0.061 13.3 0.0 1.5 1 0 0 1 1 1 0 Metanogen output domain 1 AIRS_C PF02769.22 gi|433590019|ref|YP_007279515.1| - 4.4e-25 88.6 0.9 6.5e-25 88.1 0.9 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|433590019|ref|YP_007279515.1| - 2.4e-07 31.3 0.8 2.4e-07 31.3 0.8 2.1 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain DUF4350 PF14258.6 gi|433590019|ref|YP_007279515.1| - 0.0078 16.6 0.3 0.025 15.0 0.3 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) HalOD2 PF18547.1 gi|433590019|ref|YP_007279515.1| - 0.019 14.9 0.4 1.8 8.5 0.1 2.5 2 0 0 2 2 2 0 Halobacterial output domain 2 PemK_toxin PF02452.17 gi|433590020|ref|YP_007279516.1| - 4.4e-30 104.3 0.0 4.9e-30 104.2 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system MazE_antitoxin PF04014.18 gi|433590021|ref|YP_007279517.1| - 3.2e-11 42.9 0.2 4.2e-11 42.5 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|433590021|ref|YP_007279517.1| - 0.0082 16.6 0.0 0.012 16.1 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin HTH_27 PF13463.6 gi|433590022|ref|YP_007279518.1| - 0.00077 19.9 0.1 0.00088 19.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 gi|433590022|ref|YP_007279518.1| - 0.0019 17.8 0.1 0.0025 17.4 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|433590022|ref|YP_007279518.1| - 0.0029 17.5 0.0 0.0031 17.5 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|433590022|ref|YP_007279518.1| - 0.0032 17.5 0.2 0.0041 17.2 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|433590022|ref|YP_007279518.1| - 0.0037 17.2 0.0 0.0045 16.9 0.0 1.3 1 1 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|433590022|ref|YP_007279518.1| - 0.021 14.6 0.2 0.05 13.4 0.2 1.6 1 1 0 1 1 1 0 Homeodomain-like domain Spo0A_C PF08769.11 gi|433590022|ref|YP_007279518.1| - 0.076 13.1 0.1 0.33 11.1 0.1 1.8 1 1 1 2 2 2 0 Sporulation initiation factor Spo0A C terminal Rrf2 PF02082.20 gi|433590022|ref|YP_007279518.1| - 0.093 13.1 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HlyU PF10115.9 gi|433590022|ref|YP_007279518.1| - 0.11 12.6 0.1 0.14 12.2 0.1 1.1 1 0 0 1 1 1 0 Transcriptional activator HlyU RepL PF05732.11 gi|433590022|ref|YP_007279518.1| - 0.12 11.8 0.0 0.12 11.8 0.0 1.0 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) PqqD PF05402.12 gi|433590022|ref|YP_007279518.1| - 0.12 12.7 0.1 0.16 12.3 0.1 1.2 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) Fe_dep_repress PF01325.19 gi|433590022|ref|YP_007279518.1| - 0.13 12.5 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|433590022|ref|YP_007279518.1| - 0.15 12.0 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phos_pyr_kin PF08543.12 gi|433590023|ref|YP_007279519.1| - 7.2e-88 294.1 5.4 1.1e-87 293.4 5.4 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|433590023|ref|YP_007279519.1| - 3.9e-54 182.7 1.2 8.2e-54 181.6 1.2 1.6 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|433590023|ref|YP_007279519.1| - 5.1e-10 39.1 3.1 8.4e-10 38.4 3.1 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|433590023|ref|YP_007279519.1| - 0.017 14.6 5.3 0.029 13.8 5.3 1.3 1 0 0 1 1 1 0 Carbohydrate kinase Bac_luciferase PF00296.20 gi|433590024|ref|YP_007279520.1| - 9.4e-65 219.1 3.5 2.3e-64 217.8 3.5 1.5 1 1 0 1 1 1 1 Luciferase-like monooxygenase AA_permease_2 PF13520.6 gi|433590025|ref|YP_007279521.1| - 2.9e-48 164.8 30.6 3.5e-48 164.5 30.6 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|433590025|ref|YP_007279521.1| - 7.8e-40 136.9 29.8 9.8e-40 136.5 29.8 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|433590025|ref|YP_007279521.1| - 0.0057 15.5 11.0 0.26 10.1 3.0 2.6 2 1 0 2 2 2 2 Spore germination protein AA_permease_C PF13906.6 gi|433590025|ref|YP_007279521.1| - 0.034 14.2 0.6 0.034 14.2 0.6 3.1 4 0 0 4 4 4 0 C-terminus of AA_permease Usp PF00582.26 gi|433590026|ref|YP_007279522.1| - 3.1e-07 31.0 4.1 1.8e-05 25.3 0.6 2.3 2 0 0 2 2 2 2 Universal stress protein family Usp PF00582.26 gi|433590027|ref|YP_007279523.1| - 0.00021 21.8 3.8 0.00021 21.8 3.8 1.9 2 0 0 2 2 2 1 Universal stress protein family RD3 PF14473.6 gi|433590027|ref|YP_007279523.1| - 0.03 14.1 0.1 0.049 13.5 0.1 1.3 1 0 0 1 1 1 0 RD3 protein ABC_tran PF00005.27 gi|433590028|ref|YP_007279524.1| - 9.1e-28 97.5 0.0 2.1e-27 96.3 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|433590028|ref|YP_007279524.1| - 3.3e-13 50.1 2.7 5.3e-08 33.0 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|433590028|ref|YP_007279524.1| - 0.00021 21.9 0.0 0.00051 20.7 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|433590028|ref|YP_007279524.1| - 0.0014 18.4 0.3 0.0027 17.4 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|433590028|ref|YP_007279524.1| - 0.0016 18.7 0.3 0.012 15.9 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|433590028|ref|YP_007279524.1| - 0.0027 18.2 0.0 0.0056 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|433590028|ref|YP_007279524.1| - 0.0038 17.6 0.1 0.026 14.9 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|433590028|ref|YP_007279524.1| - 0.0043 17.5 1.4 0.0089 16.4 0.1 2.1 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|433590028|ref|YP_007279524.1| - 0.01 15.3 0.3 0.25 10.7 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|433590028|ref|YP_007279524.1| - 0.019 14.8 0.9 0.086 12.7 0.1 2.2 2 1 0 2 2 2 0 RsgA GTPase MukB PF04310.12 gi|433590028|ref|YP_007279524.1| - 0.063 13.1 0.3 0.2 11.5 0.1 1.9 1 1 1 2 2 2 0 MukB N-terminal Zeta_toxin PF06414.12 gi|433590028|ref|YP_007279524.1| - 0.069 12.4 0.0 0.23 10.7 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin cobW PF02492.19 gi|433590028|ref|YP_007279524.1| - 0.097 12.2 0.2 0.25 10.9 0.2 1.7 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 gi|433590028|ref|YP_007279524.1| - 0.1 12.6 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|433590028|ref|YP_007279524.1| - 0.11 12.5 0.0 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|433590028|ref|YP_007279524.1| - 0.13 11.4 0.2 0.26 10.5 0.2 1.5 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.23 gi|433590028|ref|YP_007279524.1| - 0.14 12.2 0.4 0.99 9.5 0.1 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|433590028|ref|YP_007279524.1| - 0.17 11.5 0.0 1.9 8.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain HN PF00423.19 gi|433590029|ref|YP_007279525.1| - 0.18 10.6 0.2 0.24 10.2 0.2 1.1 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase tRNA_bind PF01588.20 gi|433590031|ref|YP_007279527.1| - 1.2e-12 47.8 0.0 1.3e-12 47.6 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain PIN PF01850.21 gi|433590033|ref|YP_007279529.1| - 0.00019 21.9 0.7 0.00026 21.5 0.7 1.2 1 0 0 1 1 1 1 PIN domain MutS_V PF00488.21 gi|433590034|ref|YP_007279530.1| - 5e-87 290.8 0.1 1.8e-86 289.0 0.0 2.0 2 0 0 2 2 2 1 MutS domain V MutS_III PF05192.18 gi|433590034|ref|YP_007279530.1| - 3.2e-36 125.4 4.6 5.7e-36 124.5 4.6 1.4 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|433590034|ref|YP_007279530.1| - 1.5e-27 96.1 0.0 3.2e-27 95.0 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|433590034|ref|YP_007279530.1| - 9.2e-26 90.0 1.2 2.1e-25 88.9 1.2 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|433590034|ref|YP_007279530.1| - 7.8e-20 71.6 0.0 2.9e-19 69.7 0.0 2.0 2 0 0 2 2 2 1 MutS domain II AAA_14 PF13173.6 gi|433590034|ref|YP_007279530.1| - 0.094 12.8 0.0 0.35 10.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|433590034|ref|YP_007279530.1| - 0.13 12.0 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain HetR_C PF18460.1 gi|433590034|ref|YP_007279530.1| - 0.19 11.7 1.5 0.84 9.6 0.1 2.8 3 0 0 3 3 3 0 Heterocyst differentiation regulator C-terminal Hood domain AAA_23 PF13476.6 gi|433590034|ref|YP_007279530.1| - 0.26 11.8 2.5 2.1 8.8 0.0 2.7 2 1 0 2 2 2 0 AAA domain Pex24p PF06398.11 gi|433590035|ref|YP_007279531.1| - 2.7 6.9 4.7 2.7 6.9 4.7 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin CcmB PF03379.13 gi|433590036|ref|YP_007279532.1| - 0.018 14.6 0.1 0.021 14.3 0.1 1.0 1 0 0 1 1 1 0 CcmB protein adh_short PF00106.25 gi|433590037|ref|YP_007279533.1| - 1.7e-60 203.9 1.2 2.2e-60 203.5 1.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|433590037|ref|YP_007279533.1| - 3.5e-60 203.5 1.3 4.2e-60 203.2 1.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|433590037|ref|YP_007279533.1| - 5.3e-12 46.0 0.4 6.7e-12 45.7 0.4 1.1 1 0 0 1 1 1 1 KR domain THF_DHG_CYH_C PF02882.19 gi|433590037|ref|YP_007279533.1| - 0.00077 18.8 0.1 0.0017 17.7 0.1 1.7 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|433590037|ref|YP_007279533.1| - 0.0012 18.2 0.1 0.0023 17.3 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|433590037|ref|YP_007279533.1| - 0.012 15.7 0.0 0.035 14.2 0.0 1.7 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.21 gi|433590037|ref|YP_007279533.1| - 0.058 12.8 0.2 0.49 9.8 0.2 2.1 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family MutL_C PF08676.11 gi|433590039|ref|YP_007279535.1| - 1.2e-36 125.7 0.0 1.7e-36 125.2 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|433590039|ref|YP_007279535.1| - 5.3e-33 113.2 0.0 9.2e-33 112.4 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|433590039|ref|YP_007279535.1| - 6.7e-13 48.6 0.0 1.3e-12 47.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|433590039|ref|YP_007279535.1| - 2.1e-05 25.0 0.0 4.3e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MFS_1 PF07690.16 gi|433590040|ref|YP_007279536.1| - 2.7e-13 49.6 32.0 2.7e-13 49.6 32.0 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|433590040|ref|YP_007279536.1| - 0.00026 20.0 0.9 0.00048 19.1 0.3 1.9 2 1 0 2 2 2 1 MFS_1 like family HTH_20 PF12840.7 gi|433590041|ref|YP_007279537.1| - 0.00054 20.0 0.2 0.0013 18.7 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain Lar_restr_allev PF14354.6 gi|433590041|ref|YP_007279537.1| - 0.0015 18.8 0.8 0.44 10.9 0.1 2.5 2 0 0 2 2 2 1 Restriction alleviation protein Lar CpXC PF14353.6 gi|433590041|ref|YP_007279537.1| - 0.0018 18.3 0.1 0.068 13.2 0.0 2.4 2 0 0 2 2 2 1 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|433590041|ref|YP_007279537.1| - 0.019 14.9 6.2 1.1 9.2 0.4 3.4 3 0 0 3 3 3 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433590041|ref|YP_007279537.1| - 0.056 13.6 7.3 19 5.4 0.1 3.6 3 1 1 4 4 4 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|433590041|ref|YP_007279537.1| - 0.081 12.3 7.8 0.099 12.0 0.5 3.0 2 1 0 2 2 2 0 Transcription factor zinc-finger DUF2688 PF10892.8 gi|433590041|ref|YP_007279537.1| - 0.11 12.0 1.0 1.4 8.5 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2688) zinc_ribbon_4 PF13717.6 gi|433590041|ref|YP_007279537.1| - 0.23 11.4 6.6 10 6.1 1.2 3.3 3 1 1 4 4 4 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|433590041|ref|YP_007279537.1| - 0.25 11.2 2.7 13 5.7 0.0 2.9 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DNA_RNApol_7kD PF03604.13 gi|433590041|ref|YP_007279537.1| - 0.37 10.5 6.9 1 9.1 0.2 3.4 4 0 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit GFA PF04828.14 gi|433590041|ref|YP_007279537.1| - 0.46 10.9 2.4 9.4 6.7 0.1 3.0 1 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.7 gi|433590041|ref|YP_007279537.1| - 0.54 10.3 5.4 33 4.6 2.6 2.9 1 1 2 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|433590041|ref|YP_007279537.1| - 0.66 9.5 5.8 3.7 7.1 0.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|433590041|ref|YP_007279537.1| - 0.71 9.4 5.2 12 5.5 0.6 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|433590041|ref|YP_007279537.1| - 1.1 9.0 10.8 13 5.6 1.2 3.6 3 0 0 3 3 3 0 Rubredoxin metal binding domain TFIIS_C PF01096.18 gi|433590041|ref|YP_007279537.1| - 1.5 8.8 4.4 14 5.7 0.0 3.7 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) Ogr_Delta PF04606.12 gi|433590041|ref|YP_007279537.1| - 1.5 8.8 5.3 5 7.2 0.2 2.8 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.6 gi|433590041|ref|YP_007279537.1| - 2.6 8.8 7.0 11 6.8 0.6 3.2 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_SprT PF17283.2 gi|433590041|ref|YP_007279537.1| - 3.9 7.5 12.1 3.7 7.6 0.0 4.2 5 0 0 5 5 5 0 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|433590041|ref|YP_007279537.1| - 5.5 6.8 10.0 7 6.5 1.0 3.1 3 0 0 3 3 3 0 zinc-ribbon domain RTC PF01137.21 gi|433590042|ref|YP_007279538.1| - 2.2e-67 226.5 0.0 3e-67 226.1 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|433590042|ref|YP_007279538.1| - 8.2e-11 42.3 0.0 1.4e-10 41.6 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain PfkB PF00294.24 gi|433590043|ref|YP_007279539.1| - 1.7e-51 175.3 0.0 2.1e-51 175.0 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Acetyltransf_1 PF00583.25 gi|433590044|ref|YP_007279540.1| - 1.5e-12 47.8 0.0 1.8e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|433590044|ref|YP_007279540.1| - 4.1e-08 33.2 0.0 6.7e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|433590044|ref|YP_007279540.1| - 8.2e-08 32.6 0.0 1.4e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433590044|ref|YP_007279540.1| - 0.00016 21.5 0.0 0.0003 20.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|433590044|ref|YP_007279540.1| - 0.11 13.2 0.0 0.13 12.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|433590044|ref|YP_007279540.1| - 0.14 12.2 0.0 0.19 11.9 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Abhydrolase_1 PF00561.20 gi|433590045|ref|YP_007279541.1| - 1.6e-29 103.3 0.0 3.4e-29 102.3 0.0 1.5 1 1 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433590045|ref|YP_007279541.1| - 5.5e-16 59.8 5.6 6.9e-16 59.5 5.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433590045|ref|YP_007279541.1| - 1.2e-14 54.2 0.3 4.1e-14 52.4 0.1 1.7 1 1 1 2 2 2 1 Serine aminopeptidase, S33 AXE1 PF05448.12 gi|433590045|ref|YP_007279541.1| - 0.013 14.1 0.1 0.025 13.3 0.0 1.5 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Peptidase_S15 PF02129.18 gi|433590045|ref|YP_007279541.1| - 0.06 12.9 0.0 0.83 9.2 0.0 2.1 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.20 gi|433590045|ref|YP_007279541.1| - 0.09 12.4 0.0 0.18 11.5 0.0 1.4 1 1 0 1 1 1 0 Putative esterase DUF676 PF05057.14 gi|433590045|ref|YP_007279541.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.5 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Tannase PF07519.11 gi|433590045|ref|YP_007279541.1| - 0.22 10.4 0.0 0.32 9.8 0.0 1.3 1 0 0 1 1 1 0 Tannase and feruloyl esterase TAT_signal PF10518.9 gi|433590046|ref|YP_007279542.1| - 0.025 14.4 1.3 0.051 13.4 1.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UPF0444 PF15475.6 gi|433590047|ref|YP_007279543.1| - 0.74 10.1 5.4 2.1 8.7 5.4 1.7 1 1 0 1 1 1 0 Transmembrane protein C12orf23, UPF0444 RNB PF00773.19 gi|433590048|ref|YP_007279544.1| - 6.8e-81 272.1 0.0 1.5e-79 267.7 0.0 2.1 1 1 0 1 1 1 1 RNB domain Abhydrolase_6 PF12697.7 gi|433590049|ref|YP_007279545.1| - 4.7e-12 47.0 10.2 6.4e-12 46.6 10.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|433590049|ref|YP_007279545.1| - 1.4e-11 44.6 0.0 6.2e-11 42.4 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|433590049|ref|YP_007279545.1| - 0.00043 19.6 0.0 0.00069 19.0 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 DUF1057 PF06342.12 gi|433590049|ref|YP_007279545.1| - 0.031 13.3 0.0 0.041 12.9 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) Abhydrolase_4 PF08386.10 gi|433590049|ref|YP_007279545.1| - 0.15 12.2 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein HTH_10 PF04967.12 gi|433590050|ref|YP_007279546.1| - 3.6e-15 55.5 0.0 5.8e-15 54.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain PUA PF01472.20 gi|433590052|ref|YP_007279548.1| - 2.6e-18 65.8 1.2 3.8e-18 65.2 1.2 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|433590052|ref|YP_007279548.1| - 0.0016 18.7 0.0 0.0023 18.1 0.0 1.2 1 0 0 1 1 1 1 UPF0113 PUA domain CBS PF00571.28 gi|433590053|ref|YP_007279549.1| - 1.3e-25 89.6 0.2 5e-13 49.3 0.1 2.1 2 0 0 2 2 2 2 CBS domain DUF604 PF04646.12 gi|433590053|ref|YP_007279549.1| - 0.23 10.8 0.0 0.31 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF604 DUF1028 PF06267.12 gi|433590054|ref|YP_007279550.1| - 4.4e-65 219.1 0.1 5.4e-65 218.8 0.1 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) SepF PF04472.12 gi|433590055|ref|YP_007279551.1| - 1.4e-16 60.6 1.9 1.4e-16 60.6 1.9 1.6 2 0 0 2 2 2 1 Cell division protein SepF Rx_N PF18052.1 gi|433590055|ref|YP_007279551.1| - 0.027 14.7 0.1 0.046 14.0 0.1 1.3 1 0 0 1 1 1 0 Rx N-terminal domain NIR_SIR PF01077.22 gi|433590056|ref|YP_007279552.1| - 1.6e-40 138.2 0.0 1.3e-33 115.7 0.0 2.5 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain Rhodanese PF00581.20 gi|433590056|ref|YP_007279552.1| - 1.5e-35 122.0 0.0 8.7e-17 61.6 0.0 2.4 2 0 0 2 2 2 2 Rhodanese-like domain NIR_SIR_ferr PF03460.17 gi|433590056|ref|YP_007279552.1| - 4.1e-35 119.5 1.7 3.7e-16 58.7 0.3 4.1 3 1 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|433590056|ref|YP_007279552.1| - 0.18 11.9 0.2 5.8 7.1 0.0 2.7 2 0 0 2 2 2 0 DGC domain FrhB_FdhB_C PF04432.13 gi|433590057|ref|YP_007279553.1| - 2.6e-27 95.6 0.0 2.6e-27 95.6 0.0 1.8 2 1 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|433590057|ref|YP_007279553.1| - 1.1e-21 76.8 0.2 1.9e-21 76.0 0.2 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.6 gi|433590057|ref|YP_007279553.1| - 1.3e-09 38.0 7.9 1.3e-09 38.0 7.9 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433590057|ref|YP_007279553.1| - 1.9e-07 31.1 13.6 3.9e-07 30.1 12.0 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433590057|ref|YP_007279553.1| - 2.5e-07 30.8 8.8 2.5e-07 30.8 8.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|433590057|ref|YP_007279553.1| - 8e-07 29.6 21.8 2.5e-05 24.8 11.0 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|433590057|ref|YP_007279553.1| - 1.1e-06 29.1 2.5 0.0058 17.2 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|433590057|ref|YP_007279553.1| - 1.2e-06 29.4 7.3 0.024 15.6 1.5 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|433590057|ref|YP_007279553.1| - 2.5e-06 27.0 18.2 0.00011 21.8 3.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|433590057|ref|YP_007279553.1| - 2.7e-05 24.3 18.3 0.00084 19.7 4.4 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|433590057|ref|YP_007279553.1| - 0.00059 19.8 4.7 0.00059 19.8 4.7 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|433590057|ref|YP_007279553.1| - 0.00081 19.3 3.8 0.00081 19.3 3.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|433590057|ref|YP_007279553.1| - 0.00082 19.6 2.6 0.0018 18.4 2.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|433590057|ref|YP_007279553.1| - 0.0016 19.0 10.9 0.14 12.7 3.9 3.0 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|433590057|ref|YP_007279553.1| - 0.0041 16.9 0.5 0.0041 16.9 0.5 1.7 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_8 PF13183.6 gi|433590057|ref|YP_007279553.1| - 0.029 14.8 14.8 0.43 11.0 4.0 2.8 2 1 3 5 5 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|433590057|ref|YP_007279553.1| - 3.6 8.8 20.9 0.22 12.5 4.4 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|433590057|ref|YP_007279553.1| - 5.3 7.8 20.3 0.22 12.3 2.4 3.9 3 1 1 4 4 4 0 4Fe-4S single cluster domain HTH_10 PF04967.12 gi|433590058|ref|YP_007279554.1| - 2.3e-21 75.3 0.3 5.9e-21 74.0 0.1 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_40 PF14493.6 gi|433590058|ref|YP_007279554.1| - 0.0055 17.1 0.7 0.13 12.7 0.0 2.5 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433590058|ref|YP_007279554.1| - 0.018 14.8 0.1 4 7.3 0.0 2.8 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|433590058|ref|YP_007279554.1| - 0.032 14.1 0.0 5 7.1 0.0 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_22 PF13309.6 gi|433590058|ref|YP_007279554.1| - 0.035 14.2 0.0 0.099 12.7 0.0 1.9 1 0 0 1 1 1 0 HTH domain DUF134 PF02001.16 gi|433590058|ref|YP_007279554.1| - 0.082 13.5 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 Sigma70_r4 PF04545.16 gi|433590058|ref|YP_007279554.1| - 0.089 12.3 0.0 1.1 8.8 0.0 2.6 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_7 PF02796.15 gi|433590058|ref|YP_007279554.1| - 0.11 12.6 0.0 0.39 10.8 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|433590058|ref|YP_007279554.1| - 0.13 12.0 0.0 0.43 10.4 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|433590058|ref|YP_007279554.1| - 0.16 12.2 0.0 2 8.7 0.0 2.4 1 1 1 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Usp PF00582.26 gi|433590059|ref|YP_007279555.1| - 1.3e-18 67.9 0.6 1.6e-18 67.6 0.6 1.1 1 0 0 1 1 1 1 Universal stress protein family Glyoxalase PF00903.25 gi|433590060|ref|YP_007279556.1| - 6.9e-11 42.4 0.2 9.2e-11 42.0 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|433590060|ref|YP_007279556.1| - 8.8e-07 29.2 0.2 0.00051 20.3 0.1 2.6 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|433590060|ref|YP_007279556.1| - 0.00012 22.9 0.3 0.00017 22.3 0.3 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|433590060|ref|YP_007279556.1| - 0.0015 18.5 0.0 0.011 15.6 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase-like domain MFS_1 PF07690.16 gi|433590061|ref|YP_007279557.1| - 6.2e-38 130.6 50.6 1.5e-34 119.5 40.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|433590061|ref|YP_007279557.1| - 0.0002 20.1 11.6 0.0002 20.1 11.6 3.1 1 1 2 3 3 3 3 MFS/sugar transport protein TRI12 PF06609.13 gi|433590061|ref|YP_007279557.1| - 0.0011 17.5 4.9 0.0011 17.5 4.9 2.3 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) DUF3439 PF11921.8 gi|433590061|ref|YP_007279557.1| - 0.03 14.3 0.0 0.066 13.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) DUF3318 PF11780.8 gi|433590061|ref|YP_007279557.1| - 1.7 8.6 4.1 16 5.5 0.4 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3318) Citrate_synt PF00285.21 gi|433590062|ref|YP_007279558.1| - 1.2e-129 432.5 0.0 1.4e-129 432.3 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain PGF-CTERM PF18204.1 gi|433590064|ref|YP_007279560.1| - 9.1e-05 22.3 6.3 9.1e-05 22.3 6.3 2.4 3 0 0 3 3 3 1 PGF-CTERM motif NPCBM_assoc PF10633.9 gi|433590064|ref|YP_007279560.1| - 0.015 15.5 0.2 0.015 15.5 0.2 2.2 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase GGACT PF06094.12 gi|433590065|ref|YP_007279561.1| - 6.6e-18 65.5 0.0 8.4e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 gi|433590065|ref|YP_007279561.1| - 0.0014 19.0 0.0 0.0021 18.4 0.0 1.4 1 1 0 1 1 1 1 AIG2-like family GP40 PF11025.8 gi|433590065|ref|YP_007279561.1| - 0.015 15.1 0.5 0.12 12.1 0.5 2.0 1 1 1 2 2 2 0 Glycoprotein GP40 of Cryptosporidium DraK_HK_N PF18092.1 gi|433590065|ref|YP_007279561.1| - 0.045 14.2 3.3 0.053 13.9 1.8 1.9 1 1 0 1 1 1 0 DraK Histidine Kinase N-terminal domain PALP PF00291.25 gi|433590066|ref|YP_007279562.1| - 1.3e-86 290.7 6.2 1.5e-86 290.5 6.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|433590066|ref|YP_007279562.1| - 0.0001 22.8 0.0 0.00098 19.7 0.0 2.4 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|433590066|ref|YP_007279562.1| - 0.00019 21.1 0.0 0.00094 18.9 0.0 2.2 1 0 0 1 1 1 1 ACT domain FtsA PF14450.6 gi|433590066|ref|YP_007279562.1| - 0.0015 18.9 0.2 0.0036 17.7 0.2 1.6 1 0 0 1 1 1 1 Cell division protein FtsA PQQ_2 PF13360.6 gi|433590067|ref|YP_007279563.1| - 2.4e-38 132.0 11.6 6.2e-16 58.7 2.4 3.6 1 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|433590067|ref|YP_007279563.1| - 8e-38 128.0 30.2 2e-05 24.9 0.3 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|433590067|ref|YP_007279563.1| - 2.5e-27 93.5 23.0 0.0004 20.2 0.1 8.4 7 1 2 9 9 9 6 PQQ enzyme repeat DUF5050 PF16472.5 gi|433590067|ref|YP_007279563.1| - 4.6e-09 35.9 0.0 5.4e-05 22.6 0.0 2.9 1 1 2 3 3 3 2 Domain of unknown function (DUF5050) DUF4314 PF14192.6 gi|433590067|ref|YP_007279563.1| - 0.012 15.5 0.3 0.03 14.2 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4314) DUF1150 PF06620.11 gi|433590067|ref|YP_007279563.1| - 0.15 12.2 0.1 1.4e+02 2.7 0.0 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1150) Ribonuc_L-PSP PF01042.21 gi|433590068|ref|YP_007279564.1| - 3.5e-39 133.5 0.0 3.9e-39 133.4 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|433590068|ref|YP_007279564.1| - 0.064 13.4 0.1 0.11 12.7 0.1 1.5 1 1 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease SRAP PF02586.14 gi|433590071|ref|YP_007279567.1| - 7.9e-63 211.9 0.0 9.2e-63 211.7 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) Gluconate_2-dh3 PF13618.6 gi|433590072|ref|YP_007279568.1| - 1.4e-06 28.6 0.0 1.8e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 Glu_dehyd_C PF16912.5 gi|433590072|ref|YP_007279568.1| - 0.058 12.9 0.0 0.078 12.5 0.0 1.1 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus TAT_signal PF10518.9 gi|433590072|ref|YP_007279568.1| - 0.066 13.1 0.9 0.17 11.8 0.9 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GMC_oxred_C PF05199.13 gi|433590073|ref|YP_007279569.1| - 2e-21 77.0 0.1 6e-21 75.5 0.1 1.8 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|433590073|ref|YP_007279569.1| - 2.4e-14 53.4 0.0 3.6e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_3 PF01494.19 gi|433590073|ref|YP_007279569.1| - 3e-07 30.0 1.7 0.0014 18.0 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|433590073|ref|YP_007279569.1| - 3.9e-07 29.5 2.0 0.01 14.9 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|433590073|ref|YP_007279569.1| - 3.1e-06 27.0 8.8 0.0061 16.2 0.1 3.3 2 2 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|433590073|ref|YP_007279569.1| - 9.6e-05 21.2 1.1 0.0047 15.7 0.8 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|433590073|ref|YP_007279569.1| - 0.00016 21.0 0.1 0.0045 16.3 0.0 2.7 3 1 1 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|433590073|ref|YP_007279569.1| - 0.0005 19.2 0.5 0.00078 18.6 0.5 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|433590073|ref|YP_007279569.1| - 0.0031 17.7 1.2 0.0067 16.6 0.5 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Fer4_7 PF12838.7 gi|433590073|ref|YP_007279569.1| - 0.016 15.8 1.2 0.037 14.6 1.2 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Pyr_redox PF00070.27 gi|433590073|ref|YP_007279569.1| - 0.18 12.4 0.3 7 7.3 0.1 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|433590073|ref|YP_007279569.1| - 0.21 11.4 1.0 0.54 10.2 1.0 1.8 1 0 0 1 1 1 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|433590073|ref|YP_007279569.1| - 1.1 10.4 3.1 2.2 9.4 3.1 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain RP853 PF17542.2 gi|433590074|ref|YP_007279570.1| - 0.71 8.9 3.9 0.74 8.9 3.9 1.0 1 0 0 1 1 1 0 Uncharacterized RP853 SPC12 PF06645.13 gi|433590074|ref|YP_007279570.1| - 0.99 9.5 3.5 1.2 9.2 3.5 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) IncE PF17627.2 gi|433590074|ref|YP_007279570.1| - 1.1 9.2 4.8 1.2 9.1 4.8 1.0 1 0 0 1 1 1 0 Inclusion membrane protein E InaF-motif PF15018.6 gi|433590074|ref|YP_007279570.1| - 10 6.1 9.2 3.5 7.6 3.3 2.3 1 1 1 2 2 2 0 TRP-interacting helix CorA PF01544.18 gi|433590075|ref|YP_007279571.1| - 1.7e-74 250.7 0.0 2e-74 250.6 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Glycos_transf_2 PF00535.26 gi|433590076|ref|YP_007279572.1| - 6.3e-19 68.4 0.0 8.3e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|433590076|ref|YP_007279572.1| - 0.0001 22.3 0.2 0.00013 21.9 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 PMT_2 PF13231.6 gi|433590077|ref|YP_007279573.1| - 5e-11 43.1 10.3 5e-11 43.1 10.3 4.0 4 1 1 5 5 5 2 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|433590077|ref|YP_007279573.1| - 5.5e-05 22.9 5.5 0.00016 21.4 5.5 1.8 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase BPD_transp_1 PF00528.22 gi|433590078|ref|YP_007279574.1| - 2.5e-25 89.3 33.3 3.5e-14 52.9 11.0 3.8 2 2 2 4 4 4 3 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|433590079|ref|YP_007279575.1| - 1.5e-16 60.6 0.1 1.9e-16 60.3 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|433590079|ref|YP_007279575.1| - 2.2e-09 37.5 1.4 2.9e-09 37.1 1.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|433590079|ref|YP_007279575.1| - 1.8e-08 34.7 3.0 2.5e-08 34.3 3.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|433590079|ref|YP_007279575.1| - 5.9e-06 26.2 1.8 9.3e-06 25.6 1.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein RGP PF03214.13 gi|433590080|ref|YP_007279576.1| - 4.1e-18 65.7 0.0 5.2e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide LPG_synthase_TM PF03706.13 gi|433590081|ref|YP_007279577.1| - 2.9e-39 135.4 43.3 3.9e-39 135.0 43.3 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Epimerase PF01370.21 gi|433590082|ref|YP_007279578.1| - 9.7e-53 179.1 0.0 1.1e-52 178.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|433590082|ref|YP_007279578.1| - 1.1e-41 143.4 0.0 6.4e-41 140.8 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|433590082|ref|YP_007279578.1| - 5.3e-16 58.4 0.0 7e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|433590082|ref|YP_007279578.1| - 7.8e-16 58.0 0.0 9e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|433590082|ref|YP_007279578.1| - 3.6e-15 55.9 0.0 9e-14 51.3 0.0 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|433590082|ref|YP_007279578.1| - 8.3e-15 55.2 0.0 1.4e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|433590082|ref|YP_007279578.1| - 9.4e-11 41.4 0.0 1.5e-05 24.3 0.0 2.7 2 1 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|433590082|ref|YP_007279578.1| - 2.7e-05 23.7 0.1 0.0052 16.3 0.0 2.5 2 1 0 2 2 2 2 short chain dehydrogenase NmrA PF05368.13 gi|433590082|ref|YP_007279578.1| - 4.8e-05 23.0 0.0 0.00057 19.5 0.0 2.0 2 0 0 2 2 2 1 NmrA-like family NAD_binding_7 PF13241.6 gi|433590082|ref|YP_007279578.1| - 0.0059 17.0 0.0 0.01 16.2 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding KR PF08659.10 gi|433590082|ref|YP_007279578.1| - 0.015 15.2 0.0 0.21 11.5 0.0 2.4 2 0 0 2 2 2 0 KR domain TrkA_N PF02254.18 gi|433590082|ref|YP_007279578.1| - 0.12 12.7 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain eRF1_2 PF03464.15 gi|433590083|ref|YP_007279579.1| - 1.1e-43 148.7 0.0 2.4e-43 147.6 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|433590083|ref|YP_007279579.1| - 1.4e-29 102.8 0.3 5.4e-29 100.9 0.0 2.2 2 0 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|433590083|ref|YP_007279579.1| - 5.8e-18 65.4 0.2 1.6e-17 64.0 0.0 1.9 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|433590083|ref|YP_007279579.1| - 4.2e-15 56.2 0.1 1.4e-14 54.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|433590083|ref|YP_007279579.1| - 1.4e-11 44.5 0.0 2.2e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 TF_Zn_Ribbon PF08271.12 gi|433590083|ref|YP_007279579.1| - 0.0019 17.7 5.6 0.0049 16.4 5.6 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|433590083|ref|YP_007279579.1| - 0.014 15.3 2.2 0.029 14.3 2.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|433590083|ref|YP_007279579.1| - 0.024 14.7 3.8 0.032 14.4 1.7 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|433590083|ref|YP_007279579.1| - 0.074 13.4 0.5 0.16 12.4 0.5 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Mu-like_Com PF10122.9 gi|433590083|ref|YP_007279579.1| - 0.082 12.4 0.1 0.21 11.1 0.1 1.7 1 0 0 1 1 1 0 Mu-like prophage protein Com pPIWI_RE_Y PF18156.1 gi|433590083|ref|YP_007279579.1| - 0.089 13.2 0.7 4 7.8 0.1 2.5 2 0 0 2 2 2 0 pPIWI_RE three-gene island domain Y zf-HYPF PF07503.12 gi|433590083|ref|YP_007279579.1| - 0.09 12.6 2.2 0.21 11.4 2.2 1.6 1 0 0 1 1 1 0 HypF finger zinc_ribbon_2 PF13240.6 gi|433590083|ref|YP_007279579.1| - 0.13 12.0 2.0 8.6 6.2 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain FliG_N PF14842.6 gi|433590083|ref|YP_007279579.1| - 0.13 12.8 0.8 2.1 9.0 0.1 2.9 3 1 0 3 3 3 0 FliG N-terminal domain DZR PF12773.7 gi|433590083|ref|YP_007279579.1| - 0.17 11.9 0.8 0.36 10.9 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf_UBZ PF18439.1 gi|433590083|ref|YP_007279579.1| - 0.5 10.0 3.6 12 5.5 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-TFIIB PF13453.6 gi|433590083|ref|YP_007279579.1| - 1 8.8 4.1 2 7.8 4.1 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn_ribbon_SprT PF17283.2 gi|433590083|ref|YP_007279579.1| - 1.6 8.7 4.3 34 4.5 4.3 2.5 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Nudix_N_2 PF14803.6 gi|433590083|ref|YP_007279579.1| - 3.9 7.5 5.8 12 6.0 5.8 1.8 1 0 0 1 1 1 0 Nudix N-terminal YhfH PF14149.6 gi|433590083|ref|YP_007279579.1| - 9.4 6.3 7.0 2.7 8.1 0.2 2.6 3 0 0 3 3 2 0 YhfH-like protein ParA PF10609.9 gi|433590084|ref|YP_007279580.1| - 6.3e-23 81.5 0.7 6.3e-12 45.5 0.6 2.9 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|433590084|ref|YP_007279580.1| - 4.6e-21 75.2 0.0 6.4e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|433590084|ref|YP_007279580.1| - 2.7e-19 69.8 0.0 3.9e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|433590084|ref|YP_007279580.1| - 1.4e-13 50.9 0.0 5.5e-13 48.9 0.0 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|433590084|ref|YP_007279580.1| - 6.4e-12 45.5 0.0 1.7e-11 44.1 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|433590084|ref|YP_007279580.1| - 1.8e-09 37.3 0.3 4.8e-09 35.9 0.3 1.6 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|433590084|ref|YP_007279580.1| - 8.4e-06 25.7 0.6 0.00026 20.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|433590084|ref|YP_007279580.1| - 4.1e-05 22.9 0.9 0.00013 21.3 1.4 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|433590084|ref|YP_007279580.1| - 0.0003 20.2 0.6 0.00057 19.3 0.6 1.4 1 0 0 1 1 1 1 VirC1 protein CLP1_P PF16575.5 gi|433590084|ref|YP_007279580.1| - 0.002 17.9 0.1 0.0031 17.4 0.1 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|433590084|ref|YP_007279580.1| - 0.0022 17.0 2.3 0.0067 15.4 2.3 1.7 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|433590084|ref|YP_007279580.1| - 0.053 13.2 0.1 0.078 12.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF1611 PF07755.11 gi|433590084|ref|YP_007279580.1| - 0.063 12.5 0.7 0.21 10.8 0.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain SRP54 PF00448.22 gi|433590084|ref|YP_007279580.1| - 0.097 12.3 1.7 0.18 11.4 1.4 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain FTHFS PF01268.19 gi|433590084|ref|YP_007279580.1| - 0.1 10.7 0.6 0.16 10.1 0.6 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase AAA_25 PF13481.6 gi|433590084|ref|YP_007279580.1| - 0.12 11.9 2.9 0.24 10.9 0.5 2.3 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|433590084|ref|YP_007279580.1| - 0.18 11.5 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain PepSY_2 PF13670.6 gi|433590085|ref|YP_007279581.1| - 0.029 14.4 1.3 2.5 8.2 0.1 2.9 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain tRNA-synt_1d PF00750.19 gi|433590086|ref|YP_007279582.1| - 3.2e-37 128.3 0.1 4.3e-37 127.9 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|433590086|ref|YP_007279582.1| - 4.9e-30 104.2 0.0 8.1e-29 100.2 0.0 2.7 2 1 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|433590086|ref|YP_007279582.1| - 2.3e-10 40.9 0.0 7.4e-10 39.3 0.0 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|433590086|ref|YP_007279582.1| - 0.021 13.7 0.0 0.13 11.2 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|433590086|ref|YP_007279582.1| - 0.04 13.3 0.0 0.093 12.1 0.0 1.5 1 1 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain DDE_Tnp_1 PF01609.21 gi|433590087|ref|YP_007279583.1| - 9.3e-17 61.4 0.0 1.4e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain ATP1G1_PLM_MAT8 PF02038.16 gi|433590088|ref|YP_007279584.1| - 0.87 9.1 3.8 5.8 6.4 0.1 2.4 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family NUDIX PF00293.28 gi|433590089|ref|YP_007279585.1| - 1e-17 64.4 0.5 1.3e-17 64.0 0.5 1.1 1 0 0 1 1 1 1 NUDIX domain Nudix_N_2 PF14803.6 gi|433590089|ref|YP_007279585.1| - 7.4e-07 29.0 2.8 1.9e-06 27.7 2.8 1.7 1 0 0 1 1 1 1 Nudix N-terminal DZR PF12773.7 gi|433590089|ref|YP_007279585.1| - 0.00019 21.4 1.8 0.0003 20.8 1.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|433590089|ref|YP_007279585.1| - 0.0037 17.3 1.8 0.045 13.8 0.1 2.6 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|433590089|ref|YP_007279585.1| - 0.012 15.7 4.7 0.034 14.3 4.1 2.0 1 1 1 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|433590089|ref|YP_007279585.1| - 0.014 15.5 5.7 0.84 9.8 1.4 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.11 gi|433590089|ref|YP_007279585.1| - 0.018 14.7 3.1 0.06 13.0 3.1 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|433590089|ref|YP_007279585.1| - 0.024 14.5 0.5 0.051 13.5 0.5 1.6 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|433590089|ref|YP_007279585.1| - 0.032 13.7 1.8 0.51 9.8 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|433590089|ref|YP_007279585.1| - 0.084 12.9 0.7 0.15 12.1 0.7 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|433590089|ref|YP_007279585.1| - 0.091 12.7 1.3 0.17 11.8 1.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|433590089|ref|YP_007279585.1| - 0.1 12.1 2.4 0.3 10.7 2.4 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding RNHCP PF12647.7 gi|433590089|ref|YP_007279585.1| - 0.1 12.6 0.6 0.18 11.8 0.6 1.3 1 0 0 1 1 1 0 RNHCP domain GFA PF04828.14 gi|433590089|ref|YP_007279585.1| - 0.11 12.9 1.6 6.7 7.1 0.1 2.4 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-TFIIB PF13453.6 gi|433590089|ref|YP_007279585.1| - 0.12 11.7 5.0 0.51 9.7 5.2 1.8 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn_ribbon_SprT PF17283.2 gi|433590089|ref|YP_007279585.1| - 0.17 11.8 1.5 0.28 11.1 1.5 1.3 1 0 0 1 1 1 0 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|433590089|ref|YP_007279585.1| - 0.19 11.5 2.7 0.46 10.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|433590089|ref|YP_007279585.1| - 0.88 9.8 5.9 0.12 12.5 2.1 1.6 2 0 0 2 2 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.7 gi|433590089|ref|YP_007279585.1| - 2.3 8.3 5.7 0.81 9.7 2.7 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PALP PF00291.25 gi|433590090|ref|YP_007279586.1| - 5.2e-58 196.8 1.4 5.9e-58 196.6 1.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Capsid_VP7 PF17071.5 gi|433590090|ref|YP_007279586.1| - 0.021 14.1 0.0 0.03 13.6 0.0 1.1 1 0 0 1 1 1 0 Outer capsid protein VP7 AstE_AspA PF04952.14 gi|433590091|ref|YP_007279587.1| - 1.8e-56 191.4 0.0 2e-56 191.2 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Pro_dh PF01619.18 gi|433590092|ref|YP_007279588.1| - 9.8e-25 87.7 0.1 1.8e-24 86.8 0.1 1.4 1 1 0 1 1 1 1 Proline dehydrogenase Amidohydro_3 PF07969.11 gi|433590092|ref|YP_007279588.1| - 0.0055 16.2 1.9 0.0097 15.4 0.6 1.7 1 1 0 2 2 2 1 Amidohydrolase family PqqD PF05402.12 gi|433590092|ref|YP_007279588.1| - 0.22 11.8 1.8 0.75 10.1 0.0 2.7 3 1 1 4 4 4 0 Coenzyme PQQ synthesis protein D (PqqD) DDE_Tnp_1 PF01609.21 gi|433590093|ref|YP_007279589.1| - 2.3e-17 63.4 0.0 3.5e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433590093|ref|YP_007279589.1| - 8.6e-05 22.5 0.0 0.00016 21.6 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) Aminotran_3 PF00202.21 gi|433590094|ref|YP_007279590.1| - 3.4e-101 338.9 0.0 4.1e-101 338.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Ribonuc_L-PSP PF01042.21 gi|433590095|ref|YP_007279591.1| - 1.8e-35 121.6 0.0 2e-35 121.4 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF4870 PF09685.10 gi|433590096|ref|YP_007279592.1| - 2.5e-11 43.7 9.5 3.5e-11 43.2 9.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) YtpI PF14007.6 gi|433590096|ref|YP_007279592.1| - 0.18 12.0 9.3 0.083 13.0 4.0 2.5 1 1 1 2 2 2 0 YtpI-like protein TadE PF07811.12 gi|433590096|ref|YP_007279592.1| - 1.4 9.2 10.3 9.1 6.6 7.2 2.5 2 0 0 2 2 2 0 TadE-like protein Replic_Relax PF13814.6 gi|433590097|ref|YP_007279593.1| - 0.02 15.0 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation FUR PF01475.19 gi|433590097|ref|YP_007279593.1| - 0.035 14.3 0.1 0.048 13.8 0.1 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_Tnp_Tc3_2 PF01498.18 gi|433590097|ref|YP_007279593.1| - 0.04 14.1 0.1 0.073 13.3 0.1 1.4 1 0 0 1 1 1 0 Transposase HTH_11 PF08279.12 gi|433590097|ref|YP_007279593.1| - 0.13 12.3 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 HTH domain YccF PF03733.13 gi|433590097|ref|YP_007279593.1| - 4 8.2 8.1 3.1 8.6 0.3 2.2 1 1 1 2 2 2 0 Inner membrane component domain Peptidase_M20 PF01546.28 gi|433590098|ref|YP_007279594.1| - 1.1e-23 84.1 3.9 1.8e-23 83.4 3.9 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|433590098|ref|YP_007279594.1| - 2.4e-12 46.7 0.8 5.1e-12 45.7 0.8 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Glyco_transf_54 PF04666.13 gi|433590099|ref|YP_007279595.1| - 0.35 9.7 0.7 0.43 9.4 0.7 1.1 1 0 0 1 1 1 0 N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region Fig1 PF12351.8 gi|433590099|ref|YP_007279595.1| - 0.76 9.7 2.3 0.96 9.3 2.3 1.1 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 Sdh5 PF03937.16 gi|433590100|ref|YP_007279596.1| - 0.047 13.6 0.2 0.11 12.5 0.2 1.6 1 0 0 1 1 1 0 Flavinator of succinate dehydrogenase YtxH PF12732.7 gi|433590100|ref|YP_007279596.1| - 0.11 13.0 0.5 0.35 11.4 0.5 1.8 1 0 0 1 1 1 0 YtxH-like protein DDE_Tnp_IS66 PF03050.14 gi|433590101|ref|YP_007279597.1| - 1.7e-51 175.4 0.9 2.4e-51 174.9 0.9 1.2 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.7 gi|433590101|ref|YP_007279597.1| - 8.9e-05 22.8 5.4 0.0021 18.4 0.9 2.9 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.6 gi|433590101|ref|YP_007279597.1| - 0.0011 19.3 1.5 0.029 14.6 0.0 2.9 3 0 0 3 3 3 1 DDE domain SOGA PF11365.8 gi|433590101|ref|YP_007279597.1| - 0.0031 18.6 3.7 0.012 16.8 0.1 2.4 2 0 0 2 2 2 1 Protein SOGA SlyX PF04102.12 gi|433590101|ref|YP_007279597.1| - 0.13 12.9 7.8 5.2 7.7 0.2 2.9 2 0 0 2 2 2 0 SlyX Csm1_N PF18504.1 gi|433590101|ref|YP_007279597.1| - 4.7 7.6 12.1 0.079 13.3 1.8 2.7 3 0 0 3 3 3 0 Csm1 N-terminal domain Aminotran_3 PF00202.21 gi|433590102|ref|YP_007279598.1| - 1.1e-77 261.5 0.0 2.5e-77 260.3 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-III CarS-like PF01864.17 gi|433590103|ref|YP_007279599.1| - 1.4e-44 152.2 0.4 1.6e-44 152.0 0.4 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|433590103|ref|YP_007279599.1| - 1.1e-05 25.3 1.4 1.1e-05 25.3 1.4 1.6 1 1 0 1 1 1 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.6 gi|433590103|ref|YP_007279599.1| - 0.063 13.0 6.9 1.4 8.7 1.3 2.4 2 0 0 2 2 2 0 YMGG-like Gly-zipper DUF2076 PF09849.9 gi|433590103|ref|YP_007279599.1| - 3.5 7.6 3.6 7.6 6.5 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2076) Peptidase_M24 PF00557.24 gi|433590104|ref|YP_007279600.1| - 3e-36 125.1 0.0 5e-36 124.4 0.0 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|433590104|ref|YP_007279600.1| - 5.2e-22 78.9 0.0 1.1e-21 77.8 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain CodY PF06018.14 gi|433590104|ref|YP_007279600.1| - 0.23 11.0 0.0 0.36 10.3 0.0 1.3 1 0 0 1 1 1 0 CodY GAF-like domain ELFV_dehydrog PF00208.21 gi|433590105|ref|YP_007279601.1| - 7.9e-70 235.3 0.1 1e-69 235.0 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|433590105|ref|YP_007279601.1| - 2.4e-56 189.2 0.0 4.1e-56 188.4 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|433590105|ref|YP_007279601.1| - 0.0004 19.8 0.0 0.00062 19.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|433590105|ref|YP_007279601.1| - 1.2 8.4 3.6 5.5 6.2 3.6 2.1 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF502 PF04367.13 gi|433590106|ref|YP_007279602.1| - 2.4e-17 62.8 0.0 4.5e-17 61.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF502) 2-Hacid_dh_C PF02826.19 gi|433590107|ref|YP_007279603.1| - 9.2e-55 184.7 0.0 1.5e-54 184.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|433590107|ref|YP_007279603.1| - 3e-16 59.3 0.0 3.8e-16 59.0 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 gi|433590107|ref|YP_007279603.1| - 0.00084 19.9 0.0 0.0023 18.5 0.0 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|433590107|ref|YP_007279603.1| - 0.041 14.1 0.2 1.9 8.8 0.1 2.8 3 0 0 3 3 3 0 TrkA-N domain IlvN PF07991.12 gi|433590107|ref|YP_007279603.1| - 0.043 13.4 0.0 0.076 12.6 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|433590107|ref|YP_007279603.1| - 0.054 13.9 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.23 gi|433590107|ref|YP_007279603.1| - 0.13 12.2 0.0 1.6 8.7 0.0 2.3 1 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|433590107|ref|YP_007279603.1| - 0.16 12.1 0.0 0.28 11.4 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Peptidase_M20 PF01546.28 gi|433590108|ref|YP_007279604.1| - 1e-21 77.6 5.3 1.4e-21 77.1 5.3 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|433590108|ref|YP_007279604.1| - 2.4e-10 40.3 0.9 5.8e-10 39.1 0.9 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain PALP PF00291.25 gi|433590109|ref|YP_007279605.1| - 8.5e-76 255.2 10.1 1.1e-75 254.8 10.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Abhydrolase_3 PF07859.13 gi|433590110|ref|YP_007279606.1| - 2.2e-75 253.1 0.0 2.8e-75 252.8 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|433590110|ref|YP_007279606.1| - 8.7e-10 38.1 0.1 3.3e-09 36.2 0.1 1.7 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_6 PF12697.7 gi|433590110|ref|YP_007279606.1| - 0.00027 21.6 5.7 0.0004 21.1 5.7 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|433590110|ref|YP_007279606.1| - 0.0022 17.5 0.0 0.059 12.8 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family Say1_Mug180 PF10340.9 gi|433590110|ref|YP_007279606.1| - 0.014 14.3 0.0 0.02 13.7 0.0 1.2 1 0 0 1 1 1 0 Steryl acetyl hydrolase DLH PF01738.18 gi|433590110|ref|YP_007279606.1| - 0.041 13.4 0.0 0.2 11.2 0.0 2.1 3 0 0 3 3 3 0 Dienelactone hydrolase family Esterase_phd PF10503.9 gi|433590110|ref|YP_007279606.1| - 0.079 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Esterase PHB depolymerase AXE1 PF05448.12 gi|433590110|ref|YP_007279606.1| - 0.12 11.0 0.0 0.41 9.3 0.0 1.7 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Pribosyltran PF00156.27 gi|433590111|ref|YP_007279607.1| - 1.1e-16 60.8 1.0 1.5e-16 60.3 1.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|433590111|ref|YP_007279607.1| - 0.00055 19.4 0.0 0.00063 19.2 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|433590111|ref|YP_007279607.1| - 0.004 16.7 0.3 0.0054 16.2 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase CBS PF00571.28 gi|433590111|ref|YP_007279607.1| - 0.16 12.5 1.8 0.4 11.2 1.8 1.7 1 1 0 1 1 1 0 CBS domain Aldolase_II PF00596.21 gi|433590112|ref|YP_007279608.1| - 1.9e-43 148.5 0.6 2.4e-43 148.2 0.6 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain HAD_2 PF13419.6 gi|433590113|ref|YP_007279609.1| - 1.3e-22 80.7 0.0 2.7e-22 79.7 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433590113|ref|YP_007279609.1| - 9e-17 62.1 0.1 1.3e-16 61.5 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433590113|ref|YP_007279609.1| - 3.7e-13 49.3 0.1 9.7e-13 48.0 0.1 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|433590113|ref|YP_007279609.1| - 0.00025 21.1 0.0 0.00058 19.9 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433590113|ref|YP_007279609.1| - 0.00093 19.6 0.7 0.0028 18.1 0.7 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|433590113|ref|YP_007279609.1| - 0.13 11.8 0.0 1.1 8.8 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase tRNA-synt_2b PF00587.25 gi|433590114|ref|YP_007279610.1| - 5.1e-32 111.3 0.0 1e-31 110.3 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|433590114|ref|YP_007279610.1| - 1.1e-15 57.5 0.4 3.2e-15 56.0 0.4 1.9 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.14 gi|433590114|ref|YP_007279610.1| - 4e-13 49.2 0.0 7.6e-13 48.3 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 gi|433590114|ref|YP_007279610.1| - 1.7e-10 40.8 0.2 4.9e-10 39.3 0.1 1.9 2 0 0 2 2 2 1 TGS domain tRNA-synt_His PF13393.6 gi|433590114|ref|YP_007279610.1| - 0.091 12.0 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidyl-tRNA synthetase Pribosyltran PF00156.27 gi|433590115|ref|YP_007279611.1| - 5.7e-11 42.2 0.1 9.4e-11 41.5 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|433590115|ref|YP_007279611.1| - 0.0025 17.8 0.0 0.015 15.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_IclR PF09339.10 gi|433590115|ref|YP_007279611.1| - 0.078 12.8 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain LacAB_rpiB PF02502.18 gi|433590115|ref|YP_007279611.1| - 0.083 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Ribose/Galactose Isomerase Peptidase_S77 PF03420.13 gi|433590115|ref|YP_007279611.1| - 0.17 11.5 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 Prohead core protein serine protease B12-binding PF02310.19 gi|433590116|ref|YP_007279612.1| - 3.1e-19 69.2 0.3 3.7e-19 68.9 0.3 1.1 1 0 0 1 1 1 1 B12 binding domain ADH_zinc_N PF00107.26 gi|433590116|ref|YP_007279612.1| - 0.00074 19.5 0.1 0.082 12.9 0.0 2.2 1 1 1 2 2 2 2 Zinc-binding dehydrogenase UPF0180 PF03698.13 gi|433590116|ref|YP_007279612.1| - 0.012 15.8 0.0 0.29 11.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Usp PF00582.26 gi|433590117|ref|YP_007279613.1| - 2.7e-32 112.2 1.1 3.1e-32 112.0 1.1 1.1 1 0 0 1 1 1 1 Universal stress protein family Ribosomal_L15e PF00827.17 gi|433590118|ref|YP_007279614.1| - 5.8e-82 274.0 3.8 7.2e-82 273.8 3.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 Terminase_5 PF06056.12 gi|433590118|ref|YP_007279614.1| - 0.063 13.2 0.5 0.19 11.6 0.5 1.8 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Pentapeptide_2 PF01469.18 gi|433590118|ref|YP_007279614.1| - 0.16 11.9 0.9 0.33 10.9 0.9 1.4 1 0 0 1 1 1 0 Pentapeptide repeats (8 copies) YjbF PF11102.8 gi|433590118|ref|YP_007279614.1| - 0.16 11.7 0.3 1.2 8.9 0.3 2.1 1 1 0 1 1 1 0 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF RIO1 PF01163.22 gi|433590119|ref|YP_007279615.1| - 2.6e-47 160.9 0.1 3.6e-47 160.4 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|433590119|ref|YP_007279615.1| - 1.2e-26 92.8 0.0 2.4e-26 91.8 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|433590119|ref|YP_007279615.1| - 3.9e-05 23.7 1.7 0.012 15.6 0.0 3.0 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|433590119|ref|YP_007279615.1| - 0.016 14.6 0.0 0.026 13.9 0.0 1.4 1 1 0 1 1 1 0 Protein kinase domain ComZ PF10815.8 gi|433590119|ref|YP_007279615.1| - 0.023 14.7 0.3 0.047 13.7 0.3 1.5 1 0 0 1 1 1 0 ComZ Corazonin PF17308.2 gi|433590119|ref|YP_007279615.1| - 0.16 12.3 0.1 2.4 8.5 0.0 2.2 2 0 0 2 2 2 0 Pro-corazonin BPL_LplA_LipB PF03099.19 gi|433590120|ref|YP_007279616.1| - 5e-07 29.7 0.0 7.5e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family AP_endonuc_2 PF01261.24 gi|433590121|ref|YP_007279617.1| - 7.6e-28 97.4 1.2 2.1e-27 95.9 0.4 1.9 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Methyltransf_25 PF13649.6 gi|433590122|ref|YP_007279618.1| - 2.2e-17 63.6 0.1 1.5e-16 60.8 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433590122|ref|YP_007279618.1| - 3.6e-17 62.8 0.1 1.2e-16 61.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433590122|ref|YP_007279618.1| - 2.5e-15 56.6 0.1 4e-15 55.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433590122|ref|YP_007279618.1| - 3e-12 46.7 0.0 4.4e-12 46.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433590122|ref|YP_007279618.1| - 2.8e-09 37.6 0.0 8.3e-09 36.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433590122|ref|YP_007279618.1| - 1.4e-07 31.1 0.0 2.4e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|433590122|ref|YP_007279618.1| - 1.5e-06 28.0 0.0 2.6e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|433590122|ref|YP_007279618.1| - 0.00014 21.5 0.0 0.00026 20.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|433590122|ref|YP_007279618.1| - 0.00065 19.5 0.0 0.001 18.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|433590122|ref|YP_007279618.1| - 0.00072 19.6 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|433590122|ref|YP_007279618.1| - 0.0063 15.9 0.1 0.0088 15.5 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|433590122|ref|YP_007279618.1| - 0.0079 15.5 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|433590122|ref|YP_007279618.1| - 0.02 15.0 0.0 0.032 14.4 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_18 PF12847.7 gi|433590122|ref|YP_007279618.1| - 0.041 13.8 0.0 0.85 9.5 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|433590122|ref|YP_007279618.1| - 0.14 11.4 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_8 PF05148.15 gi|433590122|ref|YP_007279618.1| - 0.14 11.9 0.2 0.21 11.4 0.2 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_9 PF08003.11 gi|433590122|ref|YP_007279618.1| - 0.25 10.2 0.0 0.37 9.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DUF5518 PF17647.1 gi|433590123|ref|YP_007279619.1| - 0.12 12.5 32.2 0.21 11.8 32.2 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5518) S1 PF00575.23 gi|433590124|ref|YP_007279620.1| - 0.027 14.8 0.1 0.053 13.9 0.1 1.5 1 0 0 1 1 1 0 S1 RNA binding domain DUF4330 PF14221.6 gi|433590124|ref|YP_007279620.1| - 0.037 14.2 1.0 0.06 13.6 1.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) DUF1772 PF08592.11 gi|433590125|ref|YP_007279621.1| - 0.034 14.4 0.1 0.034 14.4 0.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1772) HTH_10 PF04967.12 gi|433590127|ref|YP_007279623.1| - 5.8e-15 54.8 0.0 9.2e-15 54.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|433590127|ref|YP_007279623.1| - 0.0019 17.7 0.0 0.0053 16.3 0.0 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 Crp PF00325.20 gi|433590127|ref|YP_007279623.1| - 0.015 14.9 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Sigma70_r4_2 PF08281.12 gi|433590127|ref|YP_007279623.1| - 0.074 12.7 0.0 0.5 10.1 0.0 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 TruB_C_2 PF16198.5 gi|433590127|ref|YP_007279623.1| - 0.081 13.1 0.4 0.23 11.7 0.4 1.8 1 0 0 1 1 1 0 tRNA pseudouridylate synthase B C-terminal domain AvrL567-A PF11529.8 gi|433590127|ref|YP_007279623.1| - 0.11 12.7 0.0 0.39 10.9 0.0 1.9 3 0 0 3 3 3 0 Melampsora lini avirulence protein AvrL567-A ABC_tran PF00005.27 gi|433590128|ref|YP_007279624.1| - 4.8e-23 82.2 0.0 6.7e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433590128|ref|YP_007279624.1| - 1.7e-14 54.3 2.7 2.7e-10 40.6 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|433590128|ref|YP_007279624.1| - 0.03 15.0 0.0 0.08 13.7 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) RsgA_GTPase PF03193.16 gi|433590128|ref|YP_007279624.1| - 0.041 13.8 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|433590128|ref|YP_007279624.1| - 0.095 13.1 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|433590128|ref|YP_007279624.1| - 0.1 13.1 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|433590128|ref|YP_007279624.1| - 0.11 12.2 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|433590128|ref|YP_007279624.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 gi|433590129|ref|YP_007279625.1| - 2.8e-11 43.2 10.6 4.3e-11 42.6 10.6 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|433590129|ref|YP_007279625.1| - 1e-05 25.2 1.0 1e-05 25.2 1.0 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|433590129|ref|YP_007279625.1| - 0.00014 21.1 8.0 0.00019 20.7 8.0 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|433590129|ref|YP_007279625.1| - 0.023 14.1 5.9 0.022 14.2 4.8 1.6 1 1 0 1 1 1 0 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|433590129|ref|YP_007279625.1| - 0.1 12.6 4.6 0.035 14.0 1.6 1.8 2 1 0 2 2 2 0 ABC-2 family transporter protein TPPK_C PF12555.8 gi|433590129|ref|YP_007279625.1| - 0.54 10.3 5.9 3.3 7.8 0.9 2.8 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal SBF PF01758.16 gi|433590130|ref|YP_007279626.1| - 2.5e-14 53.4 11.4 2.5e-14 53.4 11.4 2.2 1 1 1 2 2 2 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|433590130|ref|YP_007279626.1| - 4e-06 26.4 19.3 7.6e-06 25.5 19.3 1.4 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) HTH_20 PF12840.7 gi|433590131|ref|YP_007279627.1| - 0.0012 18.8 2.9 0.0052 16.8 1.1 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain Gon7 PF08738.10 gi|433590131|ref|YP_007279627.1| - 0.16 12.0 1.1 4.3 7.5 1.1 2.2 1 1 0 1 1 1 0 Gon7 family Abhydrolase_6 PF12697.7 gi|433590133|ref|YP_007279629.1| - 0.00016 22.3 8.5 0.00024 21.8 8.5 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 gi|433590133|ref|YP_007279629.1| - 0.031 14.1 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase family ATP_bind_3 PF01171.20 gi|433590134|ref|YP_007279630.1| - 4.7e-13 49.3 0.0 7.1e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|433590134|ref|YP_007279630.1| - 1.5e-06 28.3 0.0 2.5e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|433590134|ref|YP_007279630.1| - 0.00023 20.3 0.0 0.0004 19.6 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|433590134|ref|YP_007279630.1| - 0.001 17.9 0.0 0.0016 17.3 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase zn-ribbon_14 PF16503.5 gi|433590134|ref|YP_007279630.1| - 0.0026 17.2 2.9 0.0026 17.2 2.9 3.1 4 0 0 4 4 4 1 Zinc-ribbon ThiI PF02568.14 gi|433590134|ref|YP_007279630.1| - 0.059 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) RecR PF02132.15 gi|433590134|ref|YP_007279630.1| - 0.88 9.2 7.5 0.58 9.8 2.5 3.0 3 0 0 3 3 3 0 RecR protein zf-ribbon_3 PF13248.6 gi|433590134|ref|YP_007279630.1| - 2.2 7.8 5.3 14 5.2 0.2 2.9 2 0 0 2 2 2 0 zinc-ribbon domain Tubulin PF00091.25 gi|433590135|ref|YP_007279631.1| - 6.5e-38 130.9 3.3 2.2e-37 129.2 3.3 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|433590135|ref|YP_007279631.1| - 2.9e-35 120.4 0.7 2.9e-35 120.4 0.7 2.8 2 1 0 3 3 3 1 FtsZ family, C-terminal domain ZT_dimer PF16916.5 gi|433590135|ref|YP_007279631.1| - 0.044 13.9 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter ThiF PF00899.21 gi|433590135|ref|YP_007279631.1| - 0.09 12.1 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 ThiF family Csm1_B PF18211.1 gi|433590135|ref|YP_007279631.1| - 0.12 12.3 0.0 0.47 10.3 0.0 2.0 2 0 0 2 2 2 0 Csm1 subunit domain B RHH_1 PF01402.21 gi|433590136|ref|YP_007279632.1| - 1.2e-08 34.5 0.1 1.6e-08 34.2 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|433590136|ref|YP_007279632.1| - 3e-05 24.2 0.0 3.2e-05 24.1 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family GIT1_C PF12205.8 gi|433590136|ref|YP_007279632.1| - 0.07 13.2 0.1 0.073 13.2 0.1 1.1 1 0 0 1 1 1 0 G protein-coupled receptor kinase-interacting protein 1 C term DZR PF12773.7 gi|433590137|ref|YP_007279633.1| - 7.4e-08 32.3 20.6 3.4e-06 27.0 9.6 1.7 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|433590137|ref|YP_007279633.1| - 3.4e-07 29.7 14.5 0.00019 21.1 5.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|433590137|ref|YP_007279633.1| - 2e-06 28.4 6.3 0.00057 20.6 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|433590137|ref|YP_007279633.1| - 3.5e-05 23.0 12.7 0.029 13.8 4.9 3.1 1 1 3 4 4 4 3 zinc-ribbon domain RHH_1 PF01402.21 gi|433590137|ref|YP_007279633.1| - 4.6e-05 23.2 8.0 0.00025 20.9 3.0 3.2 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family PolC_DP2 PF03833.13 gi|433590137|ref|YP_007279633.1| - 0.0027 15.7 0.3 0.0027 15.7 0.3 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Zn-ribbon_8 PF09723.10 gi|433590137|ref|YP_007279633.1| - 0.013 15.7 9.8 0.029 14.5 2.7 3.2 2 1 1 3 3 3 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|433590137|ref|YP_007279633.1| - 0.022 14.6 13.8 1.9 8.4 0.3 3.9 3 1 0 3 3 3 0 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|433590137|ref|YP_007279633.1| - 0.028 14.1 8.0 1.4 8.7 0.1 3.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain HypA PF01155.19 gi|433590137|ref|YP_007279633.1| - 0.055 13.5 2.1 0.055 13.5 2.1 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CcdA PF07362.12 gi|433590137|ref|YP_007279633.1| - 0.07 13.6 0.3 0.2 12.1 0.3 1.8 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA zf_UBZ PF18439.1 gi|433590137|ref|YP_007279633.1| - 0.078 12.6 2.3 21 4.8 0.0 3.4 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Cys_rich_KTR PF14205.6 gi|433590137|ref|YP_007279633.1| - 0.08 12.8 1.0 13 5.6 0.2 2.3 2 0 0 2 2 2 0 Cysteine-rich KTR VapB_antitoxin PF09957.9 gi|433590137|ref|YP_007279633.1| - 0.15 12.0 2.3 0.45 10.5 2.0 2.0 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB zf-CHY PF05495.12 gi|433590137|ref|YP_007279633.1| - 0.17 12.4 3.7 0.37 11.3 3.7 1.5 1 1 0 1 1 1 0 CHY zinc finger zinc-ribbons_6 PF07191.12 gi|433590137|ref|YP_007279633.1| - 0.23 11.5 8.3 0.53 10.3 5.4 2.1 1 1 1 2 2 2 0 zinc-ribbons NOB1_Zn_bind PF08772.11 gi|433590137|ref|YP_007279633.1| - 0.38 11.0 11.0 0.65 10.2 4.1 2.4 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn_ribbon_SprT PF17283.2 gi|433590137|ref|YP_007279633.1| - 0.83 9.6 11.5 9.6 6.2 0.2 3.9 2 1 2 4 4 4 0 SprT-like zinc ribbon domain zf-C3HC4_3 PF13920.6 gi|433590137|ref|YP_007279633.1| - 1.7 8.5 6.7 0.64 9.9 1.0 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.11 gi|433590137|ref|YP_007279633.1| - 3.4 7.7 10.6 0.18 11.7 2.0 2.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|433590137|ref|YP_007279633.1| - 4.3 7.3 13.2 0.28 11.1 4.8 2.5 2 1 1 3 3 2 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|433590137|ref|YP_007279633.1| - 5.1 6.7 14.4 1.7 8.2 0.2 3.3 1 1 2 3 3 3 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.6 gi|433590137|ref|YP_007279633.1| - 5.3 7.1 7.2 14 5.8 7.2 1.7 1 1 0 1 1 1 0 Transposase zinc-binding domain YtkA PF13115.6 gi|433590138|ref|YP_007279634.1| - 2.6e-09 37.6 0.2 2.6e-09 37.6 0.2 1.4 2 0 0 2 2 2 1 YtkA-like FixH PF05751.11 gi|433590138|ref|YP_007279634.1| - 0.029 14.4 0.0 0.048 13.7 0.0 1.3 1 0 0 1 1 1 0 FixH ABC_tran PF00005.27 gi|433590139|ref|YP_007279635.1| - 5.2e-32 111.2 0.0 7.7e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|433590139|ref|YP_007279635.1| - 1.3e-06 28.1 0.1 2.2e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|433590139|ref|YP_007279635.1| - 1.7e-06 27.6 0.0 0.0031 17.0 0.0 2.4 1 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|433590139|ref|YP_007279635.1| - 0.00067 19.5 0.2 0.75 9.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|433590139|ref|YP_007279635.1| - 0.0022 18.4 1.2 0.004 17.6 1.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|433590139|ref|YP_007279635.1| - 0.0039 17.1 0.1 0.39 10.6 0.0 2.2 2 0 0 2 2 2 1 NTPase MeaB PF03308.16 gi|433590139|ref|YP_007279635.1| - 0.0093 15.0 0.8 0.018 14.0 0.8 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|433590139|ref|YP_007279635.1| - 0.01 15.6 2.4 0.046 13.4 2.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|433590139|ref|YP_007279635.1| - 0.032 14.7 0.0 0.045 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|433590139|ref|YP_007279635.1| - 0.038 14.4 0.1 0.11 12.9 0.0 1.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|433590139|ref|YP_007279635.1| - 0.038 14.3 0.0 0.13 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain FtsX PF02687.21 gi|433590140|ref|YP_007279636.1| - 0.0028 18.1 3.9 0.0028 18.1 3.9 2.8 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|433590141|ref|YP_007279637.1| - 1.5e-19 71.1 4.1 1.5e-19 71.1 4.1 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|433590141|ref|YP_007279637.1| - 1.4e-07 31.9 2.3 1.4e-07 31.9 2.3 2.4 3 0 0 3 3 3 1 FtsX-like permease family CDC48_N PF02359.18 gi|433590141|ref|YP_007279637.1| - 0.012 15.8 0.0 0.028 14.6 0.0 1.5 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain LptF_LptG PF03739.14 gi|433590141|ref|YP_007279637.1| - 0.13 11.1 8.0 0.019 13.8 2.7 1.9 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG Pneumo_att_G PF05539.11 gi|433590142|ref|YP_007279638.1| - 0.032 13.8 0.0 0.032 13.8 0.0 1.4 2 0 0 2 2 2 0 Pneumovirinae attachment membrane glycoprotein G DEAD_assoc PF08494.11 gi|433590143|ref|YP_007279639.1| - 2e-36 125.6 1.4 3.3e-36 124.9 0.1 2.1 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|433590143|ref|YP_007279639.1| - 2.4e-28 99.1 0.0 6.1e-28 97.8 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|433590143|ref|YP_007279639.1| - 1.2e-22 80.3 0.0 6.8e-22 77.9 0.1 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|433590143|ref|YP_007279639.1| - 3.4e-08 33.7 0.0 7.1e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|433590143|ref|YP_007279639.1| - 0.0004 20.0 0.8 0.00095 18.8 0.2 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|433590143|ref|YP_007279639.1| - 0.0019 18.5 0.0 0.015 15.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain UvrD-helicase PF00580.21 gi|433590143|ref|YP_007279639.1| - 0.0098 15.4 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Get5_C PF18514.1 gi|433590143|ref|YP_007279639.1| - 0.054 13.2 0.3 6.6 6.6 0.0 3.1 3 0 0 3 3 3 0 Get5 C-terminal domain SNF2_N PF00176.23 gi|433590143|ref|YP_007279639.1| - 0.054 12.2 0.0 0.19 10.4 0.0 1.7 2 0 0 2 2 2 0 SNF2 family N-terminal domain HypA PF01155.19 gi|433590143|ref|YP_007279639.1| - 0.091 12.8 0.2 0.27 11.3 0.2 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_22 PF13401.6 gi|433590143|ref|YP_007279639.1| - 0.12 12.7 0.3 2.1 8.6 0.2 2.9 2 1 0 2 2 2 0 AAA domain Zn-ribbon_8 PF09723.10 gi|433590143|ref|YP_007279639.1| - 0.14 12.3 0.6 0.34 11.1 0.6 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF116 PF01976.17 gi|433590143|ref|YP_007279639.1| - 0.14 11.6 0.2 0.25 10.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF116 FliG_N PF14842.6 gi|433590143|ref|YP_007279639.1| - 0.32 11.5 1.9 20 5.8 0.2 3.3 3 0 0 3 3 3 0 FliG N-terminal domain PS_Dcarbxylase PF02666.15 gi|433590144|ref|YP_007279640.1| - 1.3e-20 73.8 0.2 1.4e-17 63.9 0.2 2.8 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase MacB_PCD PF12704.7 gi|433590144|ref|YP_007279640.1| - 0.0094 16.3 0.3 0.012 15.9 0.3 1.2 1 0 0 1 1 1 1 MacB-like periplasmic core domain ParA PF10609.9 gi|433590146|ref|YP_007279642.1| - 5.2e-11 42.5 0.6 1.6e-05 24.5 0.3 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|433590146|ref|YP_007279642.1| - 6.4e-09 35.9 0.0 8.7e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|433590146|ref|YP_007279642.1| - 3e-06 26.9 0.3 0.00049 19.7 0.0 2.3 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_31 PF13614.6 gi|433590146|ref|YP_007279642.1| - 2.3e-05 24.4 0.0 0.042 13.8 0.4 2.1 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|433590146|ref|YP_007279642.1| - 0.00089 19.4 4.5 0.31 11.2 0.1 2.4 1 1 1 2 2 2 2 AAA domain MipZ PF09140.11 gi|433590146|ref|YP_007279642.1| - 0.0095 15.2 0.3 0.62 9.3 0.0 2.2 2 0 0 2 2 2 1 ATPase MipZ AAA_25 PF13481.6 gi|433590146|ref|YP_007279642.1| - 0.021 14.4 2.8 0.047 13.2 1.0 2.5 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|433590146|ref|YP_007279642.1| - 0.14 12.1 0.0 0.33 10.9 0.0 1.7 2 0 0 2 2 2 0 NTPase ArsA_ATPase PF02374.15 gi|433590146|ref|YP_007279642.1| - 0.38 9.9 1.1 0.46 9.6 0.3 1.5 2 0 0 2 2 2 0 Anion-transporting ATPase CbiA PF01656.23 gi|433590147|ref|YP_007279643.1| - 3.9e-13 49.6 0.0 8.7e-13 48.4 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|433590147|ref|YP_007279643.1| - 1.5e-09 38.0 0.1 1.9e-06 27.9 0.1 2.2 1 1 1 2 2 2 2 AAA domain ParA PF10609.9 gi|433590147|ref|YP_007279643.1| - 2.6e-09 36.9 0.5 0.00055 19.5 0.0 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|433590147|ref|YP_007279643.1| - 2.1e-08 34.3 1.9 5.9e-07 29.5 1.9 2.3 1 1 0 1 1 1 1 AAA domain GTP_EFTU PF00009.27 gi|433590147|ref|YP_007279643.1| - 0.00083 18.9 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain MipZ PF09140.11 gi|433590147|ref|YP_007279643.1| - 0.0016 17.8 0.1 0.0025 17.1 0.1 1.3 1 0 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|433590147|ref|YP_007279643.1| - 0.0026 17.3 0.1 0.098 12.1 0.2 2.2 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ AP_endonuc_2 PF01261.24 gi|433590147|ref|YP_007279643.1| - 0.003 17.1 0.0 1.2 8.5 0.0 2.4 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel AAA_25 PF13481.6 gi|433590147|ref|YP_007279643.1| - 0.005 16.4 1.5 0.39 10.3 0.0 3.1 3 0 0 3 3 3 1 AAA domain ATPase PF06745.13 gi|433590147|ref|YP_007279643.1| - 0.0077 15.6 0.0 4.7 6.5 0.0 2.9 4 0 0 4 4 4 2 KaiC FMN_red PF03358.15 gi|433590147|ref|YP_007279643.1| - 0.032 14.0 0.0 0.079 12.7 0.0 1.7 1 0 0 1 1 1 0 NADPH-dependent FMN reductase FTHFS PF01268.19 gi|433590147|ref|YP_007279643.1| - 0.12 10.6 0.5 0.18 10.0 0.5 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase PQQ_2 PF13360.6 gi|433590148|ref|YP_007279644.1| - 2.5e-34 118.9 0.0 1.8e-21 76.9 0.0 2.4 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|433590148|ref|YP_007279644.1| - 7.7e-31 105.8 1.5 0.00053 20.4 0.2 8.3 8 0 0 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|433590148|ref|YP_007279644.1| - 5.5e-21 73.4 3.7 0.00074 19.3 0.0 6.5 7 0 0 7 7 7 5 PQQ enzyme repeat DUF5074 PF16819.5 gi|433590148|ref|YP_007279644.1| - 0.00062 19.8 0.9 0.13 12.3 0.1 3.4 3 1 0 4 4 4 1 Domain of unknown function (DUF5074) CNH PF00780.22 gi|433590148|ref|YP_007279644.1| - 0.19 11.3 0.0 1.2 8.7 0.0 2.2 3 0 0 3 3 3 0 CNH domain T2SSE PF00437.20 gi|433590154|ref|YP_007279650.1| - 2.1e-34 118.8 0.1 3.2e-34 118.2 0.1 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|433590154|ref|YP_007279650.1| - 0.0005 20.6 0.0 0.0009 19.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter cobW PF02492.19 gi|433590154|ref|YP_007279650.1| - 0.0055 16.3 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|433590154|ref|YP_007279650.1| - 0.0087 16.5 0.1 0.039 14.3 0.1 2.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|433590154|ref|YP_007279650.1| - 0.011 15.4 0.0 0.046 13.5 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|433590154|ref|YP_007279650.1| - 0.03 13.6 0.0 0.063 12.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.6 gi|433590154|ref|YP_007279650.1| - 0.065 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|433590154|ref|YP_007279650.1| - 0.086 12.3 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|433590154|ref|YP_007279650.1| - 0.16 12.2 0.0 0.36 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF5602 PF18197.1 gi|433590155|ref|YP_007279651.1| - 0.0044 17.5 0.1 0.031 14.8 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF5602) DUF4164 PF13747.6 gi|433590156|ref|YP_007279652.1| - 0.0049 17.1 8.4 0.25 11.7 0.1 3.1 1 1 0 2 2 2 1 Domain of unknown function (DUF4164) Lebercilin PF15619.6 gi|433590156|ref|YP_007279652.1| - 0.022 14.4 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease ABC_tran_CTD PF16326.5 gi|433590156|ref|YP_007279652.1| - 0.035 14.4 0.7 0.79 10.0 0.5 2.6 1 1 1 2 2 2 0 ABC transporter C-terminal domain Dynamitin PF04912.14 gi|433590156|ref|YP_007279652.1| - 0.042 13.2 0.3 3.5 6.9 0.0 2.1 1 1 1 2 2 2 0 Dynamitin NPV_P10 PF05531.12 gi|433590156|ref|YP_007279652.1| - 0.11 12.9 0.1 1.5 9.4 0.0 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DnaB_bind PF10410.9 gi|433590156|ref|YP_007279652.1| - 0.13 12.5 1.4 0.63 10.3 0.2 2.6 2 1 0 2 2 2 0 DnaB-helicase binding domain of primase Tropomyosin PF00261.20 gi|433590156|ref|YP_007279652.1| - 0.16 11.3 5.5 11 5.3 5.5 2.6 1 1 0 1 1 1 0 Tropomyosin XhlA PF10779.9 gi|433590156|ref|YP_007279652.1| - 0.17 12.1 0.2 10 6.4 0.1 3.0 2 1 0 3 3 3 0 Haemolysin XhlA BLOC1_2 PF10046.9 gi|433590156|ref|YP_007279652.1| - 0.24 11.7 0.1 11 6.4 0.0 2.6 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sugarporin_N PF11471.8 gi|433590156|ref|YP_007279652.1| - 7.1 6.7 9.1 2.2 8.3 0.4 3.5 2 1 1 3 3 3 0 Maltoporin periplasmic N-terminal extension EamA PF00892.20 gi|433590158|ref|YP_007279654.1| - 1.8e-33 115.6 31.3 3.8e-19 69.2 8.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family ABC_tran PF00005.27 gi|433590160|ref|YP_007279656.1| - 3.8e-33 114.9 0.0 5.9e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|433590160|ref|YP_007279656.1| - 3.2e-18 66.0 0.1 5.6e-18 65.2 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|433590160|ref|YP_007279656.1| - 1.4e-07 31.7 0.3 0.00013 21.8 0.4 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|433590160|ref|YP_007279656.1| - 0.0017 17.8 0.1 0.011 15.2 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|433590160|ref|YP_007279656.1| - 0.0025 18.1 0.2 0.018 15.3 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|433590160|ref|YP_007279656.1| - 0.028 14.0 1.0 4.8 6.7 0.1 2.9 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|433590160|ref|YP_007279656.1| - 0.076 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.9 gi|433590160|ref|YP_007279656.1| - 0.08 11.8 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|433590160|ref|YP_007279656.1| - 0.083 13.3 4.3 0.1 13.0 1.6 2.5 3 1 0 3 3 3 0 AAA ATPase domain AAA_5 PF07728.14 gi|433590160|ref|YP_007279656.1| - 0.1 12.6 1.1 4.8 7.2 0.1 2.7 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|433590161|ref|YP_007279657.1| - 2.1e-23 83.4 0.0 3.5e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|433590161|ref|YP_007279657.1| - 1.2e-14 54.6 0.2 2.3e-13 50.4 0.2 2.5 1 1 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|433590161|ref|YP_007279657.1| - 2.3e-05 24.4 0.5 0.00029 20.7 0.1 2.3 2 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|433590161|ref|YP_007279657.1| - 0.00094 19.5 0.1 0.047 14.0 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433590161|ref|YP_007279657.1| - 0.025 15.0 0.3 0.28 11.6 0.0 2.3 1 1 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 gi|433590161|ref|YP_007279657.1| - 0.15 11.8 0.1 0.26 11.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.22 gi|433590162|ref|YP_007279658.1| - 8.7e-31 107.1 6.5 8.7e-31 107.1 6.5 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|433590162|ref|YP_007279658.1| - 2.4e-05 24.2 0.0 2.4e-05 24.2 0.0 3.4 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|433590163|ref|YP_007279659.1| - 1.5e-42 145.4 12.5 3.5e-42 144.2 12.5 1.7 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Sigma_reg_N PF13800.6 gi|433590163|ref|YP_007279659.1| - 3.1 8.2 6.0 10 6.5 0.2 2.9 3 0 0 3 3 3 0 Sigma factor regulator N-terminal SBP_bac_5 PF00496.22 gi|433590164|ref|YP_007279660.1| - 1.9e-63 214.7 0.1 2.4e-63 214.4 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|433590164|ref|YP_007279660.1| - 0.2 11.5 3.9 0.36 10.7 3.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DDE_Tnp_IS66 PF03050.14 gi|433590165|ref|YP_007279661.1| - 2.7e-49 168.2 0.1 2.7e-49 168.2 0.1 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.12 gi|433590165|ref|YP_007279661.1| - 7.4e-09 36.1 7.8 2e-08 34.7 7.8 1.8 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.7 gi|433590165|ref|YP_007279661.1| - 9e-06 26.0 5.0 9e-06 26.0 5.0 2.7 3 0 0 3 3 1 1 zinc-finger binding domain of transposase IS66 MscS_porin PF12795.7 gi|433590165|ref|YP_007279661.1| - 9.7e-06 25.3 6.6 1.7e-05 24.5 6.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.16 gi|433590165|ref|YP_007279661.1| - 0.00055 20.4 7.2 0.0011 19.4 7.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF16 UPF0242 PF06785.11 gi|433590165|ref|YP_007279661.1| - 0.0015 18.7 13.2 0.0025 17.9 13.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus HSBP1 PF06825.12 gi|433590165|ref|YP_007279661.1| - 0.0024 17.7 6.2 0.016 15.0 0.8 2.6 1 1 0 2 2 2 1 Heat shock factor binding protein 1 SKA1 PF07160.12 gi|433590165|ref|YP_007279661.1| - 0.0035 17.2 1.0 0.0057 16.5 1.0 1.3 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 1 Herpes_UL14 PF03580.14 gi|433590165|ref|YP_007279661.1| - 0.0048 17.2 1.4 0.0088 16.3 1.4 1.4 1 0 0 1 1 1 1 Herpesvirus UL14-like protein Atg14 PF10186.9 gi|433590165|ref|YP_007279661.1| - 0.018 14.2 7.6 0.028 13.5 7.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DDE_Tnp_IS240 PF13610.6 gi|433590165|ref|YP_007279661.1| - 0.019 15.2 2.0 0.087 13.1 0.0 2.4 2 1 0 2 2 2 0 DDE domain YkyA PF10368.9 gi|433590165|ref|YP_007279661.1| - 0.021 14.5 9.5 0.035 13.8 9.5 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein HemX PF04375.14 gi|433590165|ref|YP_007279661.1| - 0.024 13.9 4.1 0.038 13.3 4.1 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase PKcGMP_CC PF16808.5 gi|433590165|ref|YP_007279661.1| - 0.026 14.4 26.3 0.13 12.1 6.8 2.6 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Fmp27_WPPW PF10359.9 gi|433590165|ref|YP_007279661.1| - 0.031 13.1 5.6 0.049 12.5 5.6 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Exonuc_VII_L PF02601.15 gi|433590165|ref|YP_007279661.1| - 0.036 13.6 3.6 0.064 12.8 3.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit ATG16 PF08614.11 gi|433590165|ref|YP_007279661.1| - 0.051 13.8 10.6 0.1 12.8 10.6 1.5 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|433590165|ref|YP_007279661.1| - 0.061 12.0 8.2 0.088 11.4 8.2 1.1 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|433590165|ref|YP_007279661.1| - 0.099 12.7 2.7 0.25 11.4 2.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon GAS PF13851.6 gi|433590165|ref|YP_007279661.1| - 0.11 11.9 9.7 0.2 11.0 9.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cortex-I_coil PF09304.10 gi|433590165|ref|YP_007279661.1| - 0.11 12.7 10.5 0.23 11.7 10.5 1.5 1 0 0 1 1 1 0 Cortexillin I, coiled coil Phage_GPO PF05929.11 gi|433590165|ref|YP_007279661.1| - 0.11 12.1 3.1 0.18 11.4 3.1 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF3552 PF12072.8 gi|433590165|ref|YP_007279661.1| - 0.11 11.9 15.6 0.2 11.1 15.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Terminase_4 PF05119.12 gi|433590165|ref|YP_007279661.1| - 0.14 12.6 0.7 0.73 10.3 0.2 2.3 2 0 0 2 2 2 0 Phage terminase, small subunit DUF1664 PF07889.12 gi|433590165|ref|YP_007279661.1| - 0.15 12.1 5.3 0.3 11.1 5.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|433590165|ref|YP_007279661.1| - 0.15 10.9 11.6 0.17 10.7 10.5 1.6 2 0 0 2 2 1 0 Spc7 kinetochore protein FliD_C PF07195.12 gi|433590165|ref|YP_007279661.1| - 0.17 11.3 3.8 0.26 10.7 3.8 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TMF_DNA_bd PF12329.8 gi|433590165|ref|YP_007279661.1| - 0.17 11.9 12.6 0.34 10.9 12.6 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.10 gi|433590165|ref|YP_007279661.1| - 0.18 12.0 5.5 0.39 10.9 5.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family CSN5_C PF18323.1 gi|433590165|ref|YP_007279661.1| - 0.19 12.7 0.7 5.4 8.0 0.8 2.6 2 0 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain FAM76 PF16046.5 gi|433590165|ref|YP_007279661.1| - 0.23 10.8 4.0 0.37 10.1 4.0 1.3 1 0 0 1 1 1 0 FAM76 protein WASH_WAHD PF11945.8 gi|433590165|ref|YP_007279661.1| - 0.27 10.7 7.2 0.39 10.2 7.2 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex DUF724 PF05266.14 gi|433590165|ref|YP_007279661.1| - 0.27 11.0 6.4 0.46 10.3 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Allexi_40kDa PF05549.11 gi|433590165|ref|YP_007279661.1| - 0.32 10.5 2.8 0.55 9.7 2.8 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3584 PF12128.8 gi|433590165|ref|YP_007279661.1| - 0.36 8.3 7.2 0.51 7.8 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TMPIT PF07851.13 gi|433590165|ref|YP_007279661.1| - 0.36 10.0 4.1 0.57 9.4 4.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein Flagellin_C PF00700.21 gi|433590165|ref|YP_007279661.1| - 0.39 11.1 1.2 0.79 10.1 1.2 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region ACCA PF03255.14 gi|433590165|ref|YP_007279661.1| - 0.5 10.2 5.0 1.3 8.9 5.0 1.7 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1910 PF08928.10 gi|433590165|ref|YP_007279661.1| - 0.66 10.0 3.8 1.7 8.6 3.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1910) LUC7 PF03194.15 gi|433590165|ref|YP_007279661.1| - 0.69 9.5 7.5 1.4 8.5 7.5 1.4 1 0 0 1 1 1 0 LUC7 N_terminus zf-FPG_IleRS PF06827.14 gi|433590165|ref|YP_007279661.1| - 0.81 9.6 4.3 8.7 6.3 0.2 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS ExsD PF16806.5 gi|433590165|ref|YP_007279661.1| - 1 9.3 5.1 14 5.6 4.3 2.1 2 0 0 2 2 2 0 Antiactivator protein ExsD DUF4407 PF14362.6 gi|433590165|ref|YP_007279661.1| - 1 8.7 3.5 1.7 7.9 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RmuC PF02646.16 gi|433590165|ref|YP_007279661.1| - 1.1 8.4 7.0 1.7 7.7 7.0 1.2 1 0 0 1 1 1 0 RmuC family FemAB PF02388.16 gi|433590165|ref|YP_007279661.1| - 1.1 8.0 6.1 1.7 7.4 6.1 1.1 1 0 0 1 1 1 0 FemAB family Fzo_mitofusin PF04799.13 gi|433590165|ref|YP_007279661.1| - 1.4 8.4 6.1 2.5 7.6 6.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region Zn-ribbon_8 PF09723.10 gi|433590165|ref|YP_007279661.1| - 1.6 8.9 5.5 14 5.9 0.8 2.7 2 0 0 2 2 2 0 Zinc ribbon domain DUF1465 PF07323.12 gi|433590165|ref|YP_007279661.1| - 1.8 8.4 6.9 1.4 8.7 3.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1465) DUF3450 PF11932.8 gi|433590165|ref|YP_007279661.1| - 2.1 7.6 15.5 1.5 8.1 10.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) DUF2203 PF09969.9 gi|433590165|ref|YP_007279661.1| - 2.1 9.1 8.1 5.8 7.7 6.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 gi|433590165|ref|YP_007279661.1| - 2.3 6.1 4.9 3.2 5.6 4.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MPS2 PF17060.5 gi|433590165|ref|YP_007279661.1| - 2.4 7.4 6.1 3.7 6.7 6.1 1.2 1 0 0 1 1 1 0 Monopolar spindle protein 2 Kre28 PF17097.5 gi|433590165|ref|YP_007279661.1| - 4 6.3 12.8 0.37 9.7 8.3 1.4 2 0 0 2 2 1 0 Spindle pole body component ABC_tran_CTD PF16326.5 gi|433590165|ref|YP_007279661.1| - 6.3 7.1 22.3 1 9.7 16.9 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain DLP_helical PF18709.1 gi|433590165|ref|YP_007279661.1| - 6.7 5.8 8.2 12 5.0 8.2 1.3 1 0 0 1 1 1 0 Dynamin-like helical domain RVT_3 PF13456.6 gi|433590166|ref|YP_007279662.1| - 0.00027 20.8 0.0 0.00053 19.8 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|433590166|ref|YP_007279662.1| - 0.031 14.4 0.0 0.038 14.2 0.0 1.2 1 0 0 1 1 1 0 RNase H DUF2240 PF09999.9 gi|433590167|ref|YP_007279663.1| - 4.6e-51 172.2 0.1 5.3e-51 172.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) ABATE PF07336.11 gi|433590167|ref|YP_007279663.1| - 0.041 14.5 2.4 0.06 14.0 2.4 1.3 1 0 0 1 1 1 0 Putative stress-induced transcription regulator HAD_2 PF13419.6 gi|433590169|ref|YP_007279665.1| - 6.6e-26 91.5 0.0 8e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433590169|ref|YP_007279665.1| - 2.6e-16 60.6 0.9 1e-15 58.6 0.9 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433590169|ref|YP_007279665.1| - 7.9e-10 38.7 1.0 1.5e-09 37.7 0.1 1.9 2 1 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|433590169|ref|YP_007279665.1| - 2.1e-07 31.5 0.5 2.9e-07 31.1 0.5 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|433590169|ref|YP_007279665.1| - 0.097 12.8 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|433590169|ref|YP_007279665.1| - 0.1 12.5 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Acid Phosphatase Methyltransf_11 PF08241.12 gi|433590171|ref|YP_007279667.1| - 9.5e-22 77.5 0.2 2e-21 76.4 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433590171|ref|YP_007279667.1| - 1.7e-21 76.7 0.1 4.2e-21 75.4 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433590171|ref|YP_007279667.1| - 5.7e-17 61.8 0.0 8.4e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|433590171|ref|YP_007279667.1| - 1.4e-16 60.7 0.0 1.8e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433590171|ref|YP_007279667.1| - 9.5e-11 41.8 0.0 1.3e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433590171|ref|YP_007279667.1| - 6.3e-08 33.3 0.0 1e-07 32.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|433590171|ref|YP_007279667.1| - 1.3e-06 28.3 0.0 4.3e-05 23.3 0.0 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 CMAS PF02353.20 gi|433590171|ref|YP_007279667.1| - 3e-06 26.8 0.0 3.7e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|433590171|ref|YP_007279667.1| - 3.5e-06 26.9 0.0 5e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|433590171|ref|YP_007279667.1| - 4.2e-06 26.4 0.2 5.7e-06 25.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|433590171|ref|YP_007279667.1| - 7.9e-05 22.3 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.11 gi|433590171|ref|YP_007279667.1| - 0.0043 16.8 0.0 0.0062 16.2 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.14 gi|433590171|ref|YP_007279667.1| - 0.022 14.2 0.0 0.029 13.8 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB Met_10 PF02475.16 gi|433590171|ref|YP_007279667.1| - 0.028 14.1 0.0 0.04 13.7 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|433590171|ref|YP_007279667.1| - 0.029 13.9 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MetW PF07021.12 gi|433590171|ref|YP_007279667.1| - 0.04 13.5 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|433590171|ref|YP_007279667.1| - 0.048 12.6 0.0 0.065 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) N6_N4_Mtase PF01555.18 gi|433590171|ref|YP_007279667.1| - 0.054 13.2 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 DNA methylase HAD_2 PF13419.6 gi|433590172|ref|YP_007279668.1| - 4.7e-12 46.4 0.0 5.8e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433590172|ref|YP_007279668.1| - 6.2e-08 33.2 0.5 1.8e-07 31.7 0.5 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433590172|ref|YP_007279668.1| - 0.0028 17.7 0.1 0.009 16.1 0.1 1.9 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|433590172|ref|YP_007279668.1| - 0.0042 17.5 0.1 0.005 17.2 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.14 gi|433590173|ref|YP_007279669.1| - 5e-54 183.5 3.6 5e-54 183.5 3.6 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|433590173|ref|YP_007279669.1| - 5.5e-21 74.9 3.7 4.2e-18 65.7 0.4 3.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|433590173|ref|YP_007279669.1| - 1.1e-12 47.9 0.1 2.4e-07 30.3 0.0 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|433590173|ref|YP_007279669.1| - 1.7e-09 37.8 5.8 0.00036 20.7 0.1 3.4 4 0 0 4 4 3 2 NAD(P)-binding Rossmann-like domain Pyr_redox_dim PF02852.22 gi|433590173|ref|YP_007279669.1| - 4.3e-07 30.2 0.0 9.4e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 3HCDH_N PF02737.18 gi|433590173|ref|YP_007279669.1| - 3.7e-05 23.7 0.8 9.1e-05 22.4 0.2 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|433590173|ref|YP_007279669.1| - 0.00012 20.9 2.3 0.19 10.4 0.0 3.6 3 1 1 4 4 4 2 HI0933-like protein TrkA_N PF02254.18 gi|433590173|ref|YP_007279669.1| - 0.00016 21.9 1.8 0.03 14.6 0.6 3.6 3 0 0 3 3 3 1 TrkA-N domain NAD_binding_2 PF03446.15 gi|433590173|ref|YP_007279669.1| - 0.0013 19.0 0.2 0.0048 17.1 0.0 2.1 3 0 0 3 3 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|433590173|ref|YP_007279669.1| - 0.0028 17.2 0.0 0.019 14.5 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|433590173|ref|YP_007279669.1| - 0.0036 17.7 0.7 0.14 12.6 0.1 3.0 3 0 0 3 3 3 1 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.23 gi|433590173|ref|YP_007279669.1| - 0.011 15.7 0.1 0.041 13.8 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Lycopene_cycl PF05834.12 gi|433590173|ref|YP_007279669.1| - 0.015 14.4 0.2 6.3 5.7 0.0 2.9 3 1 0 3 3 3 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|433590173|ref|YP_007279669.1| - 0.017 14.4 5.1 1.5 8.1 0.9 3.3 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|433590173|ref|YP_007279669.1| - 0.032 13.5 0.1 1.2 8.3 0.0 2.3 2 0 0 2 2 2 0 Thi4 family 2-Hacid_dh_C PF02826.19 gi|433590173|ref|YP_007279669.1| - 0.059 12.7 0.1 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GIDA PF01134.22 gi|433590173|ref|YP_007279669.1| - 0.09 11.8 0.2 0.09 11.8 0.2 2.8 3 1 0 3 3 3 0 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|433590173|ref|YP_007279669.1| - 0.86 8.9 11.2 0.61 9.4 0.0 3.4 2 1 1 3 3 3 0 FAD dependent oxidoreductase HxlR PF01638.17 gi|433590174|ref|YP_007279670.1| - 3.5e-26 90.9 0.0 4.3e-26 90.6 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|433590174|ref|YP_007279670.1| - 0.00086 19.2 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Pyr_redox_2 PF07992.14 gi|433590175|ref|YP_007279671.1| - 9.2e-34 117.0 0.0 1.1e-33 116.7 0.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|433590175|ref|YP_007279671.1| - 5.8e-16 58.6 0.0 7.9e-12 45.0 0.0 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|433590175|ref|YP_007279671.1| - 3.1e-09 36.9 2.5 4.4e-05 23.2 2.0 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|433590175|ref|YP_007279671.1| - 2.6e-07 30.1 6.3 4.5e-05 22.7 1.3 2.5 2 1 1 3 3 3 2 FAD binding domain Pyr_redox PF00070.27 gi|433590175|ref|YP_007279671.1| - 3.4e-07 30.7 0.2 0.024 15.2 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|433590175|ref|YP_007279671.1| - 8.8e-07 28.0 0.3 0.00024 19.9 0.7 2.1 2 0 0 2 2 2 2 HI0933-like protein K_oxygenase PF13434.6 gi|433590175|ref|YP_007279671.1| - 7.5e-06 25.3 0.0 0.00015 21.1 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|433590175|ref|YP_007279671.1| - 1.3e-05 25.3 0.3 3.2e-05 24.1 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|433590175|ref|YP_007279671.1| - 3.2e-05 23.2 0.6 6.4e-05 22.2 0.1 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|433590175|ref|YP_007279671.1| - 3.7e-05 23.2 1.0 6.2e-05 22.5 1.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|433590175|ref|YP_007279671.1| - 5.1e-05 23.3 0.9 0.096 12.7 0.0 3.2 3 0 0 3 3 3 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|433590175|ref|YP_007279671.1| - 0.0012 18.2 0.2 0.0018 17.6 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|433590175|ref|YP_007279671.1| - 0.0032 16.8 0.1 0.0061 15.9 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|433590175|ref|YP_007279671.1| - 0.0077 15.5 0.4 0.013 14.8 0.1 1.5 2 0 0 2 2 2 1 Thi4 family zf-C2H2_jaz PF12171.8 gi|433590175|ref|YP_007279671.1| - 0.2 12.0 0.3 0.3 11.4 0.3 1.3 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding Trp_halogenase PF04820.14 gi|433590175|ref|YP_007279671.1| - 0.3 9.9 0.9 1 8.1 0.3 1.9 2 0 0 2 2 2 0 Tryptophan halogenase Glyoxalase PF00903.25 gi|433590176|ref|YP_007279672.1| - 1.4e-15 57.7 0.0 1.8e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|433590176|ref|YP_007279672.1| - 1.4e-11 44.6 0.0 2e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|433590176|ref|YP_007279672.1| - 1.6e-06 28.4 0.2 3.7e-06 27.2 0.2 1.8 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|433590176|ref|YP_007279672.1| - 1.9e-05 24.5 0.0 0.0007 19.5 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|433590176|ref|YP_007279672.1| - 0.0011 19.8 0.9 0.0021 18.8 0.1 1.9 2 1 0 2 2 2 1 Glyoxalase-like domain zf-ribbon_3 PF13248.6 gi|433590177|ref|YP_007279673.1| - 0.0032 16.8 0.6 0.0052 16.1 0.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|433590177|ref|YP_007279673.1| - 0.0038 17.2 1.8 0.0059 16.6 1.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|433590177|ref|YP_007279673.1| - 0.13 12.4 3.2 0.33 11.1 3.2 1.7 1 1 0 1 1 1 0 Zinc ribbon domain DUF2116 PF09889.9 gi|433590177|ref|YP_007279673.1| - 0.29 11.2 2.6 0.47 10.5 2.6 1.3 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-NADH-PPase PF09297.11 gi|433590177|ref|YP_007279673.1| - 0.3 10.8 3.0 8.3 6.2 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin_2 PF18073.1 gi|433590177|ref|YP_007279673.1| - 0.31 10.8 2.9 1.8 8.3 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2_3 PF13878.6 gi|433590177|ref|YP_007279673.1| - 0.7 9.8 0.1 0.7 9.8 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO OMPdecase PF00215.24 gi|433590178|ref|YP_007279674.1| - 4.2e-32 111.6 0.0 4.7e-32 111.4 0.0 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family VAPB_antitox PF02697.14 gi|433590179|ref|YP_007279675.1| - 2.2e-06 28.3 0.3 3.1e-06 27.9 0.3 1.2 1 0 0 1 1 1 1 Putative antitoxin RHH_1 PF01402.21 gi|433590179|ref|YP_007279675.1| - 0.026 14.4 1.8 0.031 14.2 0.1 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family PIN PF01850.21 gi|433590180|ref|YP_007279676.1| - 3.3e-12 47.0 0.0 4.3e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain MtaB PF12176.8 gi|433590180|ref|YP_007279676.1| - 0.072 11.9 0.0 0.092 11.5 0.0 1.0 1 0 0 1 1 1 0 Methanol-cobalamin methyltransferase B subunit zf-B_box PF00643.24 gi|433590182|ref|YP_007279678.1| - 0.00057 20.0 6.4 0.00097 19.2 1.9 2.1 2 0 0 2 2 2 1 B-box zinc finger zf-HIT PF04438.16 gi|433590182|ref|YP_007279678.1| - 0.0023 17.8 2.6 0.0023 17.8 2.6 1.9 2 0 0 2 2 2 1 HIT zinc finger DZR PF12773.7 gi|433590182|ref|YP_007279678.1| - 0.13 12.3 10.4 1 9.5 5.2 2.1 1 1 1 2 2 2 0 Double zinc ribbon zf-C3HC4_3 PF13920.6 gi|433590182|ref|YP_007279678.1| - 0.2 11.5 9.1 2 8.3 9.1 2.0 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.6 gi|433590182|ref|YP_007279678.1| - 1.8 8.1 8.3 7 6.2 5.0 2.7 2 1 0 2 2 2 0 zinc-ribbon domain GTP_EFTU PF00009.27 gi|433590183|ref|YP_007279679.1| - 2e-35 122.1 0.1 2.8e-35 121.6 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|433590183|ref|YP_007279679.1| - 8.5e-11 42.1 0.7 8.5e-11 42.1 0.7 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|433590183|ref|YP_007279679.1| - 5.4e-07 29.9 0.0 3.8e-06 27.2 0.0 2.4 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain RsgA_GTPase PF03193.16 gi|433590183|ref|YP_007279679.1| - 0.0097 15.8 0.1 0.73 9.7 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|433590183|ref|YP_007279679.1| - 0.011 15.8 0.0 0.032 14.3 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Polysacc_deac_1 PF01522.21 gi|433590183|ref|YP_007279679.1| - 0.058 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase ATP_bind_1 PF03029.17 gi|433590183|ref|YP_007279679.1| - 0.23 11.2 1.0 1 9.1 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein UPF0016 PF01169.19 gi|433590184|ref|YP_007279680.1| - 2.8e-27 94.9 18.2 1.7e-16 60.3 2.7 2.3 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 P5CR_dimer PF14748.6 gi|433590185|ref|YP_007279681.1| - 5.9e-34 116.4 3.6 6.7e-34 116.2 2.5 1.7 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|433590185|ref|YP_007279681.1| - 8.2e-19 68.0 0.2 6e-18 65.2 0.1 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|433590185|ref|YP_007279681.1| - 1.6e-07 31.6 0.1 4.2e-07 30.3 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|433590185|ref|YP_007279681.1| - 7.6e-05 23.0 0.1 0.00031 21.0 0.1 2.1 1 1 0 1 1 1 1 TrkA-N domain IlvN PF07991.12 gi|433590185|ref|YP_007279681.1| - 0.00014 21.5 0.1 0.00024 20.7 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 gi|433590185|ref|YP_007279681.1| - 0.00016 22.5 1.2 0.0027 18.5 0.0 2.5 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.23 gi|433590185|ref|YP_007279681.1| - 0.00041 20.4 0.4 0.053 13.5 0.4 2.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.17 gi|433590185|ref|YP_007279681.1| - 0.00057 19.0 0.0 0.028 13.4 0.1 2.1 2 0 0 2 2 2 1 Prephenate dehydrogenase NAD_binding_10 PF13460.6 gi|433590185|ref|YP_007279681.1| - 0.0011 18.9 0.6 0.0011 18.9 0.6 2.2 2 1 1 3 3 3 1 NAD(P)H-binding Shikimate_DH PF01488.20 gi|433590185|ref|YP_007279681.1| - 0.0016 18.5 0.1 0.0035 17.4 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|433590185|ref|YP_007279681.1| - 0.0019 18.1 0.0 0.005 16.8 0.0 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|433590185|ref|YP_007279681.1| - 0.0057 16.9 0.1 0.018 15.3 0.0 1.9 2 0 0 2 2 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|433590185|ref|YP_007279681.1| - 0.0071 16.0 0.7 0.058 13.0 0.7 2.1 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|433590185|ref|YP_007279681.1| - 0.0081 15.5 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF166 PF02593.14 gi|433590185|ref|YP_007279681.1| - 0.017 14.7 0.0 0.074 12.6 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function Rossmann-like PF10727.9 gi|433590185|ref|YP_007279681.1| - 0.018 14.9 0.8 0.038 13.9 0.6 1.6 1 1 0 1 1 1 0 Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|433590185|ref|YP_007279681.1| - 0.02 14.2 0.7 0.045 13.0 0.7 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_25 PF13649.6 gi|433590185|ref|YP_007279681.1| - 0.023 15.4 0.0 0.081 13.6 0.0 2.0 1 0 0 1 1 1 0 Methyltransferase domain DapB_N PF01113.20 gi|433590185|ref|YP_007279681.1| - 0.054 13.6 0.3 0.15 12.2 0.3 1.8 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_7 PF13241.6 gi|433590185|ref|YP_007279681.1| - 0.17 12.4 0.9 0.28 11.6 0.2 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding TcpQ PF10671.9 gi|433590185|ref|YP_007279681.1| - 0.62 10.2 2.2 7.3 6.8 0.1 2.9 2 1 1 3 3 3 0 Toxin co-regulated pilus biosynthesis protein Q AA_kinase PF00696.28 gi|433590186|ref|YP_007279682.1| - 6.9e-40 137.2 1.0 8.6e-40 136.8 1.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Glyco_hydro_3_C PF01915.22 gi|433590186|ref|YP_007279682.1| - 0.079 12.9 0.7 0.16 11.9 0.4 1.6 1 1 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain Aldedh PF00171.22 gi|433590187|ref|YP_007279683.1| - 3.1e-25 88.6 0.8 1.5e-21 76.5 0.4 2.3 2 1 0 2 2 2 2 Aldehyde dehydrogenase family Pup PF05639.11 gi|433590187|ref|YP_007279683.1| - 0.23 12.4 5.0 0.8 10.7 0.0 2.9 2 0 0 2 2 2 0 Pup-like protein ARGLU PF15346.6 gi|433590187|ref|YP_007279683.1| - 0.27 11.1 3.8 0.56 10.1 3.8 1.5 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 DUF4777 PF16007.5 gi|433590188|ref|YP_007279684.1| - 0.024 14.9 0.1 0.058 13.7 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) MCH PF02289.16 gi|433590189|ref|YP_007279685.1| - 1.9e-115 385.4 0.0 2.2e-115 385.3 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Thiamine_BP PF01910.17 gi|433590190|ref|YP_007279686.1| - 5.9e-23 80.6 1.3 6.8e-23 80.4 1.3 1.0 1 0 0 1 1 1 1 Thiamine-binding protein HalOD1 PF18545.1 gi|433590190|ref|YP_007279686.1| - 0.077 13.3 3.6 0.21 11.9 3.6 1.8 1 1 0 1 1 1 0 Halobacterial output domain 1 HalOD1 PF18545.1 gi|433590191|ref|YP_007279687.1| - 1.2e-21 76.8 0.2 1.5e-21 76.4 0.2 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF4112 PF13430.6 gi|433590192|ref|YP_007279688.1| - 1.5e-30 105.5 0.4 1.8e-30 105.3 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) Methyltrn_RNA_3 PF02598.17 gi|433590193|ref|YP_007279689.1| - 1.8e-65 221.3 0.0 2e-65 221.1 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.19 gi|433590193|ref|YP_007279689.1| - 0.012 15.4 0.2 0.024 14.5 0.2 1.5 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Ribosomal_L3 PF00297.22 gi|433590194|ref|YP_007279690.1| - 4.8e-108 361.4 0.5 2.3e-107 359.2 0.5 1.8 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|433590195|ref|YP_007279691.1| - 3.7e-45 154.0 0.3 4.3e-45 153.8 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Gag_p6 PF08705.11 gi|433590195|ref|YP_007279691.1| - 0.068 13.4 0.0 0.16 12.2 0.0 1.6 1 1 0 1 1 1 0 Gag protein p6 Ribosomal_L23 PF00276.20 gi|433590196|ref|YP_007279692.1| - 1.6e-15 57.3 2.1 1.4e-14 54.2 2.1 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 Tnp_22_trimer PF17489.2 gi|433590196|ref|YP_007279692.1| - 2.9 7.9 6.7 2 8.5 1.7 2.4 2 0 0 2 2 2 0 L1 transposable element trimerization domain Ribosomal_L2_C PF03947.18 gi|433590197|ref|YP_007279693.1| - 1.3e-46 157.8 1.3 2e-46 157.3 1.3 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|433590197|ref|YP_007279693.1| - 2.3e-19 69.1 0.0 1.2e-18 66.9 0.0 2.2 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|433590198|ref|YP_007279694.1| - 2.5e-31 107.4 0.0 3.5e-31 106.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Siah-Interact_N PF09032.11 gi|433590198|ref|YP_007279694.1| - 0.059 13.7 1.3 0.083 13.2 1.3 1.2 1 0 0 1 1 1 0 Siah interacting protein, N terminal Citrate_synt PF00285.21 gi|433590198|ref|YP_007279694.1| - 0.17 10.9 0.1 0.19 10.8 0.1 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L22 PF00237.19 gi|433590199|ref|YP_007279695.1| - 2.2e-21 76.0 0.0 2.7e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|433590200|ref|YP_007279696.1| - 2.4e-20 72.8 0.5 5.6e-20 71.7 0.5 1.6 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|433590200|ref|YP_007279696.1| - 9e-17 60.7 0.1 2.3e-16 59.4 0.1 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|433590200|ref|YP_007279696.1| - 0.072 12.9 0.2 0.072 12.9 0.2 2.7 4 0 0 4 4 4 0 KH domain Ribosomal_L29 PF00831.23 gi|433590201|ref|YP_007279697.1| - 1.4e-16 60.2 0.1 1.8e-16 59.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein FUSC-like PF12805.7 gi|433590201|ref|YP_007279697.1| - 0.22 10.6 0.0 0.25 10.4 0.0 1.0 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS UPF0086 PF01868.16 gi|433590202|ref|YP_007279698.1| - 2.1e-28 98.0 0.0 2.4e-28 97.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|433590203|ref|YP_007279699.1| - 1.9e-24 85.5 2.2 2.5e-24 85.2 2.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|433590203|ref|YP_007279699.1| - 6.7e-05 23.2 0.0 0.00011 22.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|433590204|ref|YP_007279700.1| - 2.7e-37 127.5 0.6 3.3e-37 127.3 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e TRAM PF01938.20 gi|433590204|ref|YP_007279700.1| - 0.056 13.5 0.3 0.097 12.7 0.1 1.6 2 0 0 2 2 2 0 TRAM domain Ribosomal_L26 PF16906.5 gi|433590205|ref|YP_007279701.1| - 6.6e-23 81.0 0.0 8.4e-23 80.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|433590205|ref|YP_007279701.1| - 1.6e-06 27.9 0.4 3.4e-06 26.8 0.4 1.6 1 0 0 1 1 1 1 KOW motif PLRV_ORF5 PF01690.17 gi|433590205|ref|YP_007279701.1| - 0.047 12.4 0.6 0.054 12.2 0.6 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Ribosomal_S4e PF00900.20 gi|433590206|ref|YP_007279702.1| - 2.4e-25 88.3 0.0 4.3e-25 87.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|433590206|ref|YP_007279702.1| - 1.5e-11 44.2 0.1 2.4e-11 43.5 0.1 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|433590206|ref|YP_007279702.1| - 0.00028 20.5 0.0 0.00046 19.9 0.0 1.4 1 0 0 1 1 1 1 S4 domain Ribosomal_L5_C PF00673.21 gi|433590207|ref|YP_007279703.1| - 2.6e-20 72.4 0.0 5.6e-20 71.3 0.0 1.6 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|433590207|ref|YP_007279703.1| - 1.4e-17 63.7 0.1 2.4e-17 63.0 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Hva1_TUDOR PF11160.8 gi|433590207|ref|YP_007279703.1| - 0.091 12.9 0.7 0.17 12.1 0.7 1.4 1 0 0 1 1 1 0 Hypervirulence associated proteins TUDOR domain Ribosomal_S14 PF00253.21 gi|433590208|ref|YP_007279704.1| - 5.2e-11 42.1 2.7 6.2e-11 41.9 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|433590208|ref|YP_007279704.1| - 0.013 15.4 0.2 0.016 15.1 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) Ribosomal_S8 PF00410.19 gi|433590209|ref|YP_007279705.1| - 1.9e-23 82.8 0.0 2.5e-23 82.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|433590210|ref|YP_007279706.1| - 9.4e-28 96.7 3.0 7.2e-14 52.2 0.3 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.21 gi|433590210|ref|YP_007279706.1| - 0.62 10.3 6.1 2.5 8.3 0.1 3.4 2 2 2 4 4 4 0 Hsp20/alpha crystallin family Ribosomal_L32e PF01655.18 gi|433590211|ref|YP_007279707.1| - 1.8e-34 118.4 0.5 4.6e-34 117.1 0.5 1.6 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.6 gi|433590211|ref|YP_007279707.1| - 4.9e-12 46.3 0.4 4.9e-12 46.3 0.4 2.3 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 gi|433590211|ref|YP_007279707.1| - 7.7e-07 28.7 0.5 0.016 15.1 0.0 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|433590211|ref|YP_007279707.1| - 5.6e-06 26.1 0.0 3e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|433590211|ref|YP_007279707.1| - 1.4e-05 25.1 0.3 2.7e-05 24.2 0.3 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|433590211|ref|YP_007279707.1| - 0.00017 21.8 0.0 0.0019 18.4 0.0 2.3 2 0 0 2 2 2 1 Pathogenicity locus HHH_8 PF14716.6 gi|433590211|ref|YP_007279707.1| - 0.064 13.6 0.3 1.6 9.1 0.1 2.5 1 1 1 2 2 2 0 Helix-hairpin-helix domain Ribosomal_L19e PF01280.20 gi|433590212|ref|YP_007279708.1| - 2.7e-56 189.6 5.3 3e-56 189.5 5.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.9 gi|433590212|ref|YP_007279708.1| - 0.0027 17.4 0.9 0.0027 17.4 0.9 2.2 2 0 0 2 2 2 1 Short C-terminal domain Lant_dehydr_C PF14028.6 gi|433590212|ref|YP_007279708.1| - 0.035 13.6 0.4 0.039 13.5 0.4 1.1 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term AbiEi_4 PF13338.6 gi|433590212|ref|YP_007279708.1| - 0.081 13.1 0.9 5.7 7.2 0.4 2.4 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin HTH_53 PF18606.1 gi|433590212|ref|YP_007279708.1| - 0.094 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Zap helix turn helix N-terminal domain Vps35 PF03635.17 gi|433590212|ref|YP_007279708.1| - 0.1 11.1 0.0 0.12 10.8 0.0 1.1 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 SAND PF01342.21 gi|433590212|ref|YP_007279708.1| - 0.13 12.0 0.7 0.2 11.4 0.7 1.3 1 0 0 1 1 1 0 SAND domain Ribosomal_L5e PF17144.4 gi|433590213|ref|YP_007279709.1| - 6.8e-31 107.5 0.0 2.1e-19 70.1 0.0 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|433590213|ref|YP_007279709.1| - 1.3e-09 38.4 0.0 2e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5_C PF03719.15 gi|433590214|ref|YP_007279710.1| - 3.8e-23 80.7 0.1 7.9e-23 79.7 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|433590214|ref|YP_007279710.1| - 9.6e-23 79.9 0.8 2.1e-22 78.8 0.1 1.9 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.20 gi|433590215|ref|YP_007279711.1| - 4.4e-10 39.3 0.0 7.6e-10 38.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|433590216|ref|YP_007279712.1| - 7.4e-18 65.5 0.4 7.4e-18 65.5 0.4 1.5 2 0 0 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CP_ATPgrasp_1 PF04174.13 gi|433590216|ref|YP_007279712.1| - 0.05 12.6 0.0 0.059 12.4 0.0 1.1 1 0 0 1 1 1 0 A circularly permuted ATPgrasp SecY PF00344.20 gi|433590217|ref|YP_007279713.1| - 3.3e-69 233.5 17.4 4e-69 233.2 17.4 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|433590217|ref|YP_007279713.1| - 1.3e-11 44.1 3.2 7.9e-11 41.6 0.7 2.8 2 0 0 2 2 2 1 Plug domain of Sec61p COX4_pro PF03626.14 gi|433590218|ref|YP_007279714.1| - 5.6e-12 45.9 9.0 6.5e-12 45.7 9.0 1.1 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF2070 PF09843.9 gi|433590218|ref|YP_007279714.1| - 2.9 6.1 7.6 2.9 6.1 7.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) zf-C2HC_2 PF13913.6 gi|433590220|ref|YP_007279716.1| - 0.0062 16.4 0.6 0.011 15.6 0.6 1.4 1 0 0 1 1 1 1 zinc-finger of a C2HC-type zf-Di19 PF05605.12 gi|433590220|ref|YP_007279716.1| - 0.0072 16.6 0.6 0.011 16.0 0.6 1.3 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-CHCC PF10276.9 gi|433590220|ref|YP_007279716.1| - 0.016 15.3 0.3 0.024 14.7 0.3 1.3 1 0 0 1 1 1 0 Zinc-finger domain zf-C2H2_4 PF13894.6 gi|433590220|ref|YP_007279716.1| - 0.033 15.0 0.4 0.099 13.5 0.3 1.8 2 0 0 2 2 2 0 C2H2-type zinc finger Rad50_zn_hook PF04423.14 gi|433590220|ref|YP_007279716.1| - 0.034 14.0 0.1 0.061 13.2 0.1 1.4 1 0 0 1 1 1 0 Rad50 zinc hook motif DUF2256 PF10013.9 gi|433590220|ref|YP_007279716.1| - 0.039 14.1 0.1 0.057 13.5 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) Sgf11 PF08209.11 gi|433590220|ref|YP_007279716.1| - 0.044 13.3 0.1 0.065 12.8 0.1 1.2 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) zf-C2H2 PF00096.26 gi|433590220|ref|YP_007279716.1| - 0.12 12.9 0.8 0.26 11.8 0.8 1.5 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-RING_7 PF02591.15 gi|433590220|ref|YP_007279716.1| - 0.16 12.2 0.3 0.25 11.6 0.3 1.3 1 0 0 1 1 1 0 C4-type zinc ribbon domain Peptidase_S8 PF00082.22 gi|433590221|ref|YP_007279717.1| - 4.6e-45 154.1 5.1 4.6e-45 154.1 5.1 1.9 2 1 0 2 2 2 1 Subtilase family Fer2 PF00111.27 gi|433590222|ref|YP_007279718.1| - 7.2e-08 32.3 0.9 1.8e-07 31.0 0.9 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|433590222|ref|YP_007279718.1| - 0.0038 17.2 0.3 0.0067 16.4 0.3 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain COX1 PF00115.20 gi|433590223|ref|YP_007279719.1| - 3.7e-124 414.9 74.0 3.7e-124 414.9 74.0 3.1 2 1 0 3 3 3 2 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|433590223|ref|YP_007279719.1| - 1.7e-21 77.3 17.4 1.7e-21 77.3 17.4 2.7 2 1 0 2 2 2 1 Cytochrome c oxidase subunit III COX2 PF00116.20 gi|433590224|ref|YP_007279720.1| - 5e-13 49.0 0.0 4.2e-12 46.0 0.0 2.3 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|433590224|ref|YP_007279720.1| - 0.0026 17.8 0.0 0.17 12.0 0.0 2.5 2 1 0 2 2 2 1 Cupredoxin-like domain fn3 PF00041.21 gi|433590224|ref|YP_007279720.1| - 0.0048 17.2 0.1 0.011 16.1 0.1 1.5 1 0 0 1 1 1 1 Fibronectin type III domain PPC PF04151.15 gi|433590224|ref|YP_007279720.1| - 0.027 15.5 0.1 4.9 8.3 0.0 3.2 3 0 0 3 3 3 0 Bacterial pre-peptidase C-terminal domain DUF3284 PF11687.8 gi|433590224|ref|YP_007279720.1| - 0.12 12.2 1.5 0.28 11.1 1.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF3284) ADK PF00406.22 gi|433590226|ref|YP_007279722.1| - 1.1e-44 152.1 0.0 1.4e-44 151.8 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|433590226|ref|YP_007279722.1| - 2.9e-22 79.5 1.5 9e-22 78.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|433590226|ref|YP_007279722.1| - 1.7e-07 31.9 0.1 5.1e-07 30.3 0.0 1.7 1 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|433590226|ref|YP_007279722.1| - 5.3e-05 23.4 0.1 0.0012 19.1 0.0 2.6 2 1 1 3 3 3 1 AAA domain ADK_lid PF05191.14 gi|433590226|ref|YP_007279722.1| - 0.0052 16.7 0.1 0.014 15.3 0.0 1.8 2 1 0 2 2 2 1 Adenylate kinase, active site lid PduV-EutP PF10662.9 gi|433590226|ref|YP_007279722.1| - 0.015 15.0 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation dNK PF01712.19 gi|433590226|ref|YP_007279722.1| - 0.019 14.8 0.8 3.6 7.4 0.0 2.9 2 1 1 3 3 3 0 Deoxynucleoside kinase RuvB_N PF05496.12 gi|433590226|ref|YP_007279722.1| - 0.03 14.1 0.0 0.062 13.0 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Ploopntkinase3 PF18751.1 gi|433590226|ref|YP_007279722.1| - 0.049 13.5 0.0 0.077 12.9 0.0 1.5 1 1 0 1 1 1 0 P-loop Nucleotide Kinase3 Thymidylate_kin PF02223.17 gi|433590226|ref|YP_007279722.1| - 0.079 12.6 1.5 30 4.2 0.0 3.0 3 0 0 3 3 3 0 Thymidylate kinase Zeta_toxin PF06414.12 gi|433590226|ref|YP_007279722.1| - 0.1 11.9 0.2 0.36 10.1 0.2 2.0 1 1 0 1 1 1 0 Zeta toxin Big_3_5 PF16640.5 gi|433590227|ref|YP_007279723.1| - 2.9 8.1 7.2 1.9 8.7 0.1 3.2 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) EMC3_TMCO1 PF01956.16 gi|433590228|ref|YP_007279724.1| - 1.3e-39 135.7 0.8 2e-39 135.0 0.8 1.3 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like Pinin_SDK_memA PF04696.13 gi|433590228|ref|YP_007279724.1| - 0.0045 17.1 4.0 0.0071 16.4 4.0 1.3 1 0 0 1 1 1 1 pinin/SDK/memA/ protein conserved region HemX PF04375.14 gi|433590228|ref|YP_007279724.1| - 0.0051 16.2 0.5 0.0075 15.6 0.5 1.2 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase Q_salvage PF10343.9 gi|433590228|ref|YP_007279724.1| - 0.014 15.0 0.4 0.021 14.4 0.4 1.2 1 0 0 1 1 1 0 Potential Queuosine, Q, salvage protein family DUF4199 PF13858.6 gi|433590228|ref|YP_007279724.1| - 0.036 14.5 5.4 0.2 12.1 5.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) 60KD_IMP PF02096.20 gi|433590228|ref|YP_007279724.1| - 0.14 12.1 4.9 10 6.0 4.9 2.1 1 1 0 1 1 1 0 60Kd inner membrane protein AAA_23 PF13476.6 gi|433590228|ref|YP_007279724.1| - 0.15 12.5 1.4 0.23 11.9 1.4 1.2 1 0 0 1 1 1 0 AAA domain DUF4746 PF15928.5 gi|433590228|ref|YP_007279724.1| - 0.27 10.6 3.3 0.43 10.0 3.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) OmpH PF03938.14 gi|433590228|ref|YP_007279724.1| - 0.28 11.5 10.1 0.58 10.5 10.1 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF5383 PF17355.2 gi|433590228|ref|YP_007279724.1| - 0.3 11.5 3.2 0.58 10.5 3.2 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5383) MIF4G_like_2 PF09090.11 gi|433590228|ref|YP_007279724.1| - 0.57 9.6 3.7 0.91 8.9 3.7 1.2 1 0 0 1 1 1 0 MIF4G like ABC_tran_CTD PF16326.5 gi|433590228|ref|YP_007279724.1| - 0.91 9.8 18.8 0.15 12.3 4.9 2.6 3 0 0 3 3 3 0 ABC transporter C-terminal domain Golgin_A5 PF09787.9 gi|433590228|ref|YP_007279724.1| - 1.1 8.6 9.5 1.8 8.0 9.5 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 DUF4407 PF14362.6 gi|433590228|ref|YP_007279724.1| - 1.2 8.5 6.3 2.6 7.3 6.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) zf-C4H2 PF10146.9 gi|433590228|ref|YP_007279724.1| - 1.3 9.3 6.3 2.2 8.5 6.3 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein DUF3987 PF13148.6 gi|433590228|ref|YP_007279724.1| - 2.7 6.9 7.9 4.2 6.3 7.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Cytidylate_kin2 PF13189.6 gi|433590229|ref|YP_007279725.1| - 8.3e-21 74.9 0.3 1.2e-18 67.9 0.3 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|433590229|ref|YP_007279725.1| - 3.8e-16 59.8 0.0 5.2e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|433590229|ref|YP_007279725.1| - 3.3e-13 50.2 0.0 8e-13 49.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|433590229|ref|YP_007279725.1| - 9.3e-09 35.3 0.6 0.00029 20.6 0.0 2.1 1 1 0 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|433590229|ref|YP_007279725.1| - 1.8e-07 31.4 0.0 3.9e-07 30.3 0.0 1.7 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.6 gi|433590229|ref|YP_007279725.1| - 1e-06 29.0 0.4 5.4e-05 23.4 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|433590229|ref|YP_007279725.1| - 0.0011 19.2 0.2 0.0038 17.5 0.2 2.0 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|433590229|ref|YP_007279725.1| - 0.0036 17.6 0.0 0.0056 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433590229|ref|YP_007279725.1| - 0.0044 17.4 0.7 0.0067 16.8 0.7 1.7 1 1 0 1 1 1 1 AAA ATPase domain SKI PF01202.22 gi|433590229|ref|YP_007279725.1| - 0.0053 16.9 0.9 0.037 14.2 0.9 2.0 1 1 0 1 1 1 1 Shikimate kinase Thymidylate_kin PF02223.17 gi|433590229|ref|YP_007279725.1| - 0.0055 16.4 0.2 3.4 7.3 0.1 2.4 2 1 0 2 2 2 2 Thymidylate kinase AAA PF00004.29 gi|433590229|ref|YP_007279725.1| - 0.006 17.0 0.0 0.011 16.2 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|433590229|ref|YP_007279725.1| - 0.018 14.3 0.1 0.079 12.2 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin KTI12 PF08433.10 gi|433590229|ref|YP_007279725.1| - 0.022 14.2 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.6 gi|433590229|ref|YP_007279725.1| - 0.038 13.7 0.2 0.69 9.6 0.1 2.3 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|433590229|ref|YP_007279725.1| - 0.057 13.8 0.0 0.093 13.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|433590229|ref|YP_007279725.1| - 0.059 13.4 0.0 0.15 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) dNK PF01712.19 gi|433590229|ref|YP_007279725.1| - 0.084 12.7 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 Deoxynucleoside kinase ABC_tran PF00005.27 gi|433590229|ref|YP_007279725.1| - 0.16 12.5 0.0 0.18 12.3 0.0 1.4 1 1 0 1 1 1 0 ABC transporter Rad17 PF03215.15 gi|433590229|ref|YP_007279725.1| - 0.18 11.7 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain TruB_N PF01509.18 gi|433590230|ref|YP_007279726.1| - 1.3e-22 80.8 0.4 3.8e-13 50.1 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|433590230|ref|YP_007279726.1| - 1.8e-19 69.6 0.0 4.4e-19 68.4 0.0 1.7 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|433590230|ref|YP_007279726.1| - 4.5e-09 36.2 0.5 8.4e-09 35.3 0.5 1.5 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|433590230|ref|YP_007279726.1| - 1.9e-08 34.2 0.1 3.7e-08 33.3 0.1 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain DUF3701 PF12482.8 gi|433590230|ref|YP_007279726.1| - 0.0051 16.9 0.2 0.013 15.5 0.0 1.7 2 0 0 2 2 2 1 Phage integrase protein Zn-ribbon_8 PF09723.10 gi|433590231|ref|YP_007279727.1| - 0.0022 18.0 9.8 0.04 14.0 4.9 2.7 1 1 1 2 2 2 1 Zinc ribbon domain zf-C2HC_2 PF13913.6 gi|433590231|ref|YP_007279727.1| - 0.043 13.7 5.4 0.28 11.1 0.2 2.7 2 0 0 2 2 2 0 zinc-finger of a C2HC-type HypA PF01155.19 gi|433590231|ref|YP_007279727.1| - 0.072 13.1 6.7 1.1 9.3 4.2 2.2 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_5 PF13719.6 gi|433590231|ref|YP_007279727.1| - 0.098 12.4 8.9 4 7.3 0.3 3.3 1 1 2 3 3 3 0 zinc-ribbon domain DUF2318 PF10080.9 gi|433590231|ref|YP_007279727.1| - 0.12 12.5 3.9 2.4 8.3 0.3 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) LIM PF00412.22 gi|433590231|ref|YP_007279727.1| - 0.45 10.8 9.8 0.31 11.3 1.1 2.7 1 1 0 2 2 2 0 LIM domain VATC PF18716.1 gi|433590231|ref|YP_007279727.1| - 0.45 10.4 8.7 0.47 10.3 2.0 2.9 3 0 0 3 3 3 0 Vms1-associating treble clef domain FYDLN_acid PF09538.10 gi|433590231|ref|YP_007279727.1| - 0.8 10.4 4.0 0.41 11.3 0.3 2.1 1 1 0 2 2 2 0 Protein of unknown function (FYDLN_acid) DUF1272 PF06906.11 gi|433590231|ref|YP_007279727.1| - 1.3 9.1 10.5 0.42 10.8 6.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1272) CpXC PF14353.6 gi|433590231|ref|YP_007279727.1| - 2.3 8.3 6.1 96 3.1 6.2 2.4 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_4 PF13717.6 gi|433590231|ref|YP_007279727.1| - 3.3 7.7 11.0 2.7 8.0 2.0 2.9 2 2 0 2 2 2 0 zinc-ribbon domain Sgf11 PF08209.11 gi|433590231|ref|YP_007279727.1| - 3.8 7.2 12.8 1.8 8.2 0.4 3.1 3 1 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Pilin_N PF07790.11 gi|433590233|ref|YP_007279729.1| - 2.8e-08 34.6 1.6 5.1e-08 33.7 1.6 1.7 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal TGBp3 PF02495.17 gi|433590233|ref|YP_007279729.1| - 2.4 7.9 6.8 18 5.1 0.0 3.1 3 0 0 3 3 3 0 Triple gene block 3 DUF4307 PF14155.6 gi|433590233|ref|YP_007279729.1| - 6.7 6.6 8.4 2.3 8.1 0.3 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4307) Pilin_N PF07790.11 gi|433590234|ref|YP_007279730.1| - 1.9e-17 64.0 2.3 3.6e-17 63.0 2.3 1.6 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF4307 PF14155.6 gi|433590234|ref|YP_007279730.1| - 0.11 12.3 0.7 0.18 11.6 0.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) Pilin_N PF07790.11 gi|433590235|ref|YP_007279731.1| - 0.00011 23.1 0.6 0.00019 22.3 0.6 1.5 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal HalOD1 PF18545.1 gi|433590236|ref|YP_007279732.1| - 1.4e-22 79.7 2.0 1.6e-22 79.5 2.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Reprolysin_3 PF13582.6 gi|433590237|ref|YP_007279733.1| - 4.7e-05 23.9 0.3 0.00019 22.0 0.3 2.0 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M90 PF06167.12 gi|433590237|ref|YP_007279733.1| - 0.047 13.3 0.0 0.07 12.7 0.0 1.1 1 0 0 1 1 1 0 Glucose-regulated metallo-peptidase M90 Peptidase_M10 PF00413.24 gi|433590237|ref|YP_007279733.1| - 0.057 13.3 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 Matrixin Peptidase_M8 PF01457.16 gi|433590237|ref|YP_007279733.1| - 0.08 11.6 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Leishmanolysin DEAD_assoc PF08494.11 gi|433590238|ref|YP_007279734.1| - 5.3e-52 176.4 0.7 1e-51 175.5 0.7 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|433590238|ref|YP_007279734.1| - 1.8e-27 96.2 0.0 1.8e-26 93.0 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|433590238|ref|YP_007279734.1| - 3.1e-18 66.1 0.1 5.5e-17 62.1 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|433590238|ref|YP_007279734.1| - 8.3e-06 25.9 0.0 4.6e-05 23.5 0.0 2.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|433590238|ref|YP_007279734.1| - 0.01 16.1 0.0 0.079 13.2 0.0 2.5 1 1 0 1 1 1 0 AAA domain Abhydrolase_1 PF00561.20 gi|433590239|ref|YP_007279735.1| - 1e-20 74.4 0.2 9e-17 61.6 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433590239|ref|YP_007279735.1| - 2.3e-16 61.1 6.8 2.8e-16 60.8 6.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433590239|ref|YP_007279735.1| - 2.3e-10 40.1 0.0 3.4e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|433590239|ref|YP_007279735.1| - 0.047 13.8 0.0 0.094 12.8 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein Ndr PF03096.14 gi|433590239|ref|YP_007279735.1| - 0.047 12.4 0.0 0.052 12.2 0.0 1.2 1 0 0 1 1 1 0 Ndr family HTH_24 PF13412.6 gi|433590240|ref|YP_007279736.1| - 6.3e-05 22.5 0.1 0.025 14.1 0.1 2.9 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_Tnp_Tc3_2 PF01498.18 gi|433590240|ref|YP_007279736.1| - 0.00082 19.6 0.0 0.0014 18.8 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_AsnC-type PF13404.6 gi|433590240|ref|YP_007279736.1| - 0.02 14.7 1.0 0.078 12.8 0.7 2.1 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_32 PF13565.6 gi|433590240|ref|YP_007279736.1| - 0.11 13.1 0.0 0.26 12.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain 4HBT PF03061.22 gi|433590241|ref|YP_007279737.1| - 1.8e-13 50.6 0.1 7e-13 48.7 0.1 1.8 2 0 0 2 2 2 1 Thioesterase superfamily DUF4442 PF14539.6 gi|433590241|ref|YP_007279737.1| - 7.2e-09 35.9 0.0 8.9e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|433590241|ref|YP_007279737.1| - 0.023 14.9 0.0 0.029 14.6 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily 3HCDH_N PF02737.18 gi|433590242|ref|YP_007279738.1| - 3.2e-62 209.6 0.0 4.6e-62 209.1 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|433590242|ref|YP_007279738.1| - 1.8e-55 188.0 0.0 2.4e-55 187.6 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|433590242|ref|YP_007279738.1| - 1.2e-45 154.0 1.0 4.2e-21 75.4 0.0 3.5 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|433590242|ref|YP_007279738.1| - 6.5e-32 111.3 0.0 1.3e-28 100.5 0.0 2.4 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|433590242|ref|YP_007279738.1| - 0.00022 21.4 0.1 0.0006 20.0 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|433590242|ref|YP_007279738.1| - 0.00024 21.1 0.0 0.00039 20.4 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|433590242|ref|YP_007279738.1| - 0.00047 19.8 0.1 0.0009 18.9 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|433590242|ref|YP_007279738.1| - 0.00095 19.7 0.5 0.0081 16.7 0.5 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent OTCace PF00185.24 gi|433590242|ref|YP_007279738.1| - 0.087 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AlaDh_PNT_C PF01262.21 gi|433590242|ref|YP_007279738.1| - 0.2 10.9 0.1 0.33 10.2 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain APH PF01636.23 gi|433590243|ref|YP_007279739.1| - 1.5e-44 152.7 7.0 2.1e-44 152.2 7.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 gi|433590243|ref|YP_007279739.1| - 0.0017 17.7 0.0 0.0028 17.0 0.0 1.3 1 0 0 1 1 1 1 Ecdysteroid kinase HAD_2 PF13419.6 gi|433590244|ref|YP_007279740.1| - 5.8e-23 81.9 0.0 7.5e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433590244|ref|YP_007279740.1| - 2.3e-13 50.9 0.2 4.1e-13 50.1 0.2 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433590244|ref|YP_007279740.1| - 4.1e-12 46.0 0.0 8.3e-12 45.0 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|433590244|ref|YP_007279740.1| - 0.0022 18.5 0.4 0.0027 18.2 0.4 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF3038 PF11237.8 gi|433590244|ref|YP_007279740.1| - 0.083 12.9 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) adh_short_C2 PF13561.6 gi|433590245|ref|YP_007279741.1| - 1.3e-60 204.9 1.0 1.7e-60 204.5 1.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433590245|ref|YP_007279741.1| - 6.3e-60 202.0 0.2 7.9e-60 201.7 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433590245|ref|YP_007279741.1| - 1.4e-13 51.1 0.1 2.1e-13 50.6 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433590245|ref|YP_007279741.1| - 3.1e-06 26.8 0.1 8.4e-06 25.4 0.1 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|433590245|ref|YP_007279741.1| - 0.0056 16.1 0.1 0.1 12.0 0.0 2.1 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|433590245|ref|YP_007279741.1| - 0.006 15.7 0.2 0.014 14.5 0.2 1.6 1 1 1 2 2 2 1 RmlD substrate binding domain F420_oxidored PF03807.17 gi|433590245|ref|YP_007279741.1| - 0.019 15.5 0.1 0.034 14.7 0.1 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|433590245|ref|YP_007279741.1| - 0.053 13.4 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|433590245|ref|YP_007279741.1| - 0.054 13.7 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase THF_DHG_CYH_C PF02882.19 gi|433590245|ref|YP_007279741.1| - 0.077 12.3 0.1 0.34 10.2 0.0 1.9 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Bac_luciferase PF00296.20 gi|433590246|ref|YP_007279742.1| - 3.6e-83 279.6 0.8 4.8e-83 279.2 0.8 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase FCD PF07729.12 gi|433590246|ref|YP_007279742.1| - 0.42 11.0 2.2 1.4 9.4 0.2 2.6 2 1 0 2 2 2 0 FCD domain TPR_4 PF07721.14 gi|433590246|ref|YP_007279742.1| - 1.6 9.6 8.8 11 7.0 0.5 4.1 3 0 0 3 3 3 0 Tetratricopeptide repeat Abhydrolase_6 PF12697.7 gi|433590247|ref|YP_007279743.1| - 2.8e-16 60.8 10.4 3.3e-16 60.6 10.4 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|433590247|ref|YP_007279743.1| - 7.6e-10 38.9 0.0 2.1e-08 34.1 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|433590247|ref|YP_007279743.1| - 0.00014 21.2 0.0 0.00074 18.9 0.0 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|433590247|ref|YP_007279743.1| - 0.00019 21.6 0.0 0.00032 20.9 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_4 PF08386.10 gi|433590247|ref|YP_007279743.1| - 0.001 19.2 0.0 0.0024 17.9 0.0 1.7 2 0 0 2 2 2 1 TAP-like protein Abhydrolase_8 PF06259.12 gi|433590247|ref|YP_007279743.1| - 0.021 14.5 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase HTH_10 PF04967.12 gi|433590248|ref|YP_007279744.1| - 7.9e-21 73.6 0.4 1.8e-20 72.4 0.1 1.8 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|433590248|ref|YP_007279744.1| - 8.7e-06 25.2 0.2 2.2e-05 23.9 0.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 BAT PF15915.5 gi|433590248|ref|YP_007279744.1| - 3.7e-05 23.6 2.6 0.00015 21.7 2.6 1.9 1 1 0 1 1 1 1 GAF and HTH_10 associated domain HTH_AsnC-type PF13404.6 gi|433590248|ref|YP_007279744.1| - 0.0036 17.1 1.7 0.0088 15.9 0.6 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|433590248|ref|YP_007279744.1| - 0.029 14.0 0.5 0.37 10.5 0.5 2.4 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|433590248|ref|YP_007279744.1| - 0.042 13.4 0.2 0.1 12.2 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433590248|ref|YP_007279744.1| - 0.072 13.0 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 MarR family AIRS_C PF02769.22 gi|433590249|ref|YP_007279745.1| - 2.6e-23 82.9 3.0 4.1e-23 82.2 3.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|433590249|ref|YP_007279745.1| - 2.2e-14 53.8 1.2 4.3e-14 52.9 0.6 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Ion_trans_2 PF07885.16 gi|433590250|ref|YP_007279746.1| - 1.5e-11 44.1 2.9 1.5e-11 44.1 2.9 2.6 2 0 0 2 2 2 1 Ion channel TrkA_N PF02254.18 gi|433590250|ref|YP_007279746.1| - 1.1e-10 41.8 1.4 1.9e-10 41.0 1.4 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans PF00520.31 gi|433590250|ref|YP_007279746.1| - 0.0094 15.2 0.1 0.015 14.6 0.1 1.3 1 0 0 1 1 1 1 Ion transport protein DUF2529 PF10740.9 gi|433590250|ref|YP_007279746.1| - 0.02 14.6 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2529) Shikimate_DH PF01488.20 gi|433590250|ref|YP_007279746.1| - 0.04 14.0 0.1 0.84 9.7 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DUF2784 PF10861.8 gi|433590250|ref|YP_007279746.1| - 0.85 9.7 7.7 0.094 12.8 1.9 2.3 1 1 1 2 2 2 0 Protein of Unknown function (DUF2784) PAP2 PF01569.21 gi|433590251|ref|YP_007279747.1| - 1e-19 70.7 2.1 1e-19 70.7 2.1 2.5 2 1 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|433590251|ref|YP_007279747.1| - 5.7e-06 26.2 15.9 5.7e-06 26.2 15.9 2.7 2 1 0 2 2 2 1 PAP2 superfamily INSIG PF07281.12 gi|433590251|ref|YP_007279747.1| - 0.022 14.4 1.7 0.035 13.7 0.0 2.1 2 1 0 2 2 2 0 Insulin-induced protein (INSIG) Lung_7-TM_R PF06814.13 gi|433590251|ref|YP_007279747.1| - 1.4 8.1 5.7 2.7 7.2 0.9 2.2 2 0 0 2 2 2 0 Lung seven transmembrane receptor BAT PF15915.5 gi|433590252|ref|YP_007279748.1| - 4.2e-38 130.7 6.3 6.5e-38 130.1 6.3 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|433590252|ref|YP_007279748.1| - 2.3e-22 78.5 0.0 4.4e-22 77.6 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|433590252|ref|YP_007279748.1| - 0.0003 20.2 0.0 0.00096 18.6 0.0 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|433590252|ref|YP_007279748.1| - 0.0008 19.0 0.2 0.19 11.5 0.0 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 GerE PF00196.19 gi|433590252|ref|YP_007279748.1| - 0.05 13.1 0.0 0.83 9.2 0.0 2.3 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_1 PF00126.27 gi|433590252|ref|YP_007279748.1| - 0.14 12.1 1.0 0.33 10.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HalOD1 PF18545.1 gi|433590253|ref|YP_007279749.1| - 2.7e-22 78.8 0.4 3.3e-22 78.5 0.4 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 AAA_12 PF13087.6 gi|433590254|ref|YP_007279750.1| - 4.4e-39 134.2 0.0 9.1e-39 133.1 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_11 PF13086.6 gi|433590254|ref|YP_007279750.1| - 2e-38 132.7 0.8 9.6e-19 68.2 0.5 2.6 1 1 1 2 2 2 2 AAA domain Dna2 PF08696.11 gi|433590254|ref|YP_007279750.1| - 2.8e-22 79.5 0.0 1.4e-20 74.0 0.0 2.3 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.6 gi|433590254|ref|YP_007279750.1| - 1.2e-16 61.0 3.1 4.4e-16 59.2 1.9 2.5 2 1 0 2 2 1 1 AAA domain PDDEXK_1 PF12705.7 gi|433590254|ref|YP_007279750.1| - 1.9e-16 60.8 0.5 8.7e-16 58.6 0.0 2.3 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.6 gi|433590254|ref|YP_007279750.1| - 3.4e-13 50.2 0.1 1e-12 48.6 0.1 1.9 2 0 0 2 2 1 1 AAA domain Viral_helicase1 PF01443.18 gi|433590254|ref|YP_007279750.1| - 4.3e-07 29.9 0.0 0.0012 18.6 0.0 3.2 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 gi|433590254|ref|YP_007279750.1| - 8.1e-06 25.6 0.0 1.7e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain Cas_Cas4 PF01930.17 gi|433590254|ref|YP_007279750.1| - 3.8e-05 23.8 0.0 0.0002 21.5 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function DUF83 AAA_16 PF13191.6 gi|433590254|ref|YP_007279750.1| - 0.00011 22.6 3.2 0.00013 22.4 1.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain Helicase_RecD PF05127.14 gi|433590254|ref|YP_007279750.1| - 0.0002 21.3 0.7 0.0015 18.4 0.7 2.4 1 1 0 1 1 1 1 Helicase ResIII PF04851.15 gi|433590254|ref|YP_007279750.1| - 0.001 19.1 0.0 0.0023 18.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|433590254|ref|YP_007279750.1| - 0.0013 19.0 0.0 0.0054 17.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|433590254|ref|YP_007279750.1| - 0.0052 16.3 0.0 0.034 13.6 0.0 2.2 1 1 0 1 1 1 1 PhoH-like protein AAA PF00004.29 gi|433590254|ref|YP_007279750.1| - 0.0099 16.3 0.1 0.033 14.6 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|433590254|ref|YP_007279750.1| - 0.011 15.5 0.0 0.037 13.8 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF4350 PF14258.6 gi|433590254|ref|YP_007279750.1| - 0.013 15.9 1.7 35 4.9 0.0 4.8 5 1 0 5 5 4 0 Domain of unknown function (DUF4350) AAA_7 PF12775.7 gi|433590254|ref|YP_007279750.1| - 0.016 14.7 0.0 0.047 13.2 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|433590254|ref|YP_007279750.1| - 0.018 14.1 0.0 0.036 13.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|433590254|ref|YP_007279750.1| - 0.022 14.3 0.4 0.093 12.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|433590254|ref|YP_007279750.1| - 0.026 14.2 0.1 0.078 12.6 0.0 1.9 2 1 0 2 2 1 0 SRP54-type protein, GTPase domain UvrD_C_2 PF13538.6 gi|433590254|ref|YP_007279750.1| - 0.031 14.1 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain DUF2075 PF09848.9 gi|433590254|ref|YP_007279750.1| - 0.099 11.9 0.0 0.51 9.5 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.14 gi|433590254|ref|YP_007279750.1| - 0.099 12.6 0.0 0.39 10.7 0.0 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|433590254|ref|YP_007279750.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|433590254|ref|YP_007279750.1| - 0.18 11.2 0.0 0.31 10.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PIF1 PF05970.14 gi|433590254|ref|YP_007279750.1| - 0.2 10.8 0.0 4.4 6.4 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase SPW PF03779.14 gi|433590255|ref|YP_007279751.1| - 1.5e-05 24.4 23.4 0.00057 19.4 9.4 2.3 2 0 0 2 2 2 2 SPW repeat NVEALA PF14055.6 gi|433590255|ref|YP_007279751.1| - 0.3 11.1 2.0 5.2 7.1 0.0 2.8 3 1 0 3 3 3 0 NVEALA protein DUF2104 PF09877.9 gi|433590255|ref|YP_007279751.1| - 0.8 10.0 7.1 2.9 8.2 2.1 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2104) MSP1a PF11670.8 gi|433590255|ref|YP_007279751.1| - 0.82 8.9 6.1 1.2 8.4 1.4 2.1 2 0 0 2 2 2 0 Major surface protein 1a (MSP1a) ETRAMP PF09716.10 gi|433590255|ref|YP_007279751.1| - 1.2 9.2 3.3 61 3.8 0.1 3.4 3 1 1 4 4 4 0 Malarial early transcribed membrane protein (ETRAMP) DUF5337 PF17272.2 gi|433590255|ref|YP_007279751.1| - 2.2 8.2 5.0 0.43 10.5 0.2 2.1 2 1 0 2 2 2 0 Family of unknown function (DUF5337) FeoB_associated PF12669.7 gi|433590255|ref|YP_007279751.1| - 9.9 6.7 0.0 9.9 6.7 0.0 3.5 3 1 1 4 4 4 0 FeoB-associated Cys-rich membrane protein HHH_2 PF12826.7 gi|433590257|ref|YP_007279753.1| - 0.00057 19.9 1.5 0.036 14.2 0.6 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif DUF5595 PF18077.1 gi|433590257|ref|YP_007279753.1| - 0.056 13.5 0.6 0.14 12.3 0.6 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5595) PIN PF01850.21 gi|433590258|ref|YP_007279754.1| - 9.2e-13 48.8 0.1 1.2e-12 48.4 0.1 1.1 1 0 0 1 1 1 1 PIN domain zf-HC2 PF13490.6 gi|433590258|ref|YP_007279754.1| - 0.057 13.7 2.8 4.3 7.7 0.2 3.0 3 0 0 3 3 3 0 Putative zinc-finger VAPB_antitox PF02697.14 gi|433590259|ref|YP_007279755.1| - 3.5e-11 43.7 0.5 4.6e-11 43.3 0.5 1.3 1 0 0 1 1 1 1 Putative antitoxin DUF3225 PF11533.8 gi|433590260|ref|YP_007279756.1| - 8.5e-05 22.3 0.2 0.00012 21.8 0.2 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3225) SnoaL_3 PF13474.6 gi|433590260|ref|YP_007279756.1| - 0.00012 22.3 0.3 0.00017 21.8 0.3 1.2 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.20 gi|433590260|ref|YP_007279756.1| - 0.046 14.3 0.0 0.063 13.8 0.0 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain Zincin_2 PF10103.9 gi|433590262|ref|YP_007279758.1| - 7.4e-61 206.2 4.1 1.1e-31 110.4 0.9 2.0 1 1 1 2 2 2 2 Zincin-like metallopeptidase DUF4366 PF14283.6 gi|433590263|ref|YP_007279759.1| - 0.016 15.2 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) CEND1 PF15677.5 gi|433590263|ref|YP_007279759.1| - 0.024 15.2 0.8 0.032 14.8 0.8 1.1 1 0 0 1 1 1 0 Cell cycle exit and neuronal differentiation protein 1 LSM PF01423.22 gi|433590264|ref|YP_007279760.1| - 2.5e-19 68.7 0.0 2.8e-19 68.5 0.0 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|433590264|ref|YP_007279760.1| - 4.8e-07 29.8 0.0 6.5e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF150_C PF17384.2 gi|433590264|ref|YP_007279760.1| - 0.05 13.7 0.0 0.074 13.2 0.0 1.3 1 0 0 1 1 1 0 RimP C-terminal SH3 domain Ribosomal_L37e PF01907.19 gi|433590265|ref|YP_007279761.1| - 2.3e-21 75.7 15.1 2.5e-21 75.6 15.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-RanBP PF00641.18 gi|433590265|ref|YP_007279761.1| - 0.031 13.6 3.3 0.45 9.9 0.2 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others HypA PF01155.19 gi|433590265|ref|YP_007279761.1| - 0.041 13.9 3.1 0.047 13.7 3.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|433590265|ref|YP_007279761.1| - 0.17 11.4 4.6 4.6 6.8 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|433590265|ref|YP_007279761.1| - 0.2 11.4 7.1 0.5 10.1 0.8 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-C3HC4_2 PF13923.6 gi|433590265|ref|YP_007279761.1| - 0.28 11.0 4.1 0.36 10.7 4.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.11 gi|433590265|ref|YP_007279761.1| - 0.98 9.4 8.1 1.8 8.6 8.1 1.5 1 1 1 2 2 2 0 Putative transposase DNA-binding domain PALP PF00291.25 gi|433590266|ref|YP_007279762.1| - 5e-63 213.3 1.3 5.8e-63 213.0 1.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DZR PF12773.7 gi|433590266|ref|YP_007279762.1| - 0.0093 16.0 0.5 0.017 15.1 0.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|433590266|ref|YP_007279762.1| - 0.06 13.5 1.6 0.15 12.2 0.9 2.1 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|433590266|ref|YP_007279762.1| - 0.13 12.3 0.4 0.25 11.4 0.4 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2HC5 PF06221.13 gi|433590266|ref|YP_007279762.1| - 0.16 12.0 0.1 0.27 11.2 0.1 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type PcrB PF01884.17 gi|433590268|ref|YP_007279764.1| - 2.3e-50 171.2 0.5 2.7e-50 170.9 0.5 1.0 1 0 0 1 1 1 1 PcrB family HTH_10 PF04967.12 gi|433590269|ref|YP_007279765.1| - 6.1e-18 64.4 0.1 1.2e-17 63.4 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|433590269|ref|YP_007279765.1| - 7.1e-09 35.7 1.3 7.1e-09 35.7 1.3 1.9 2 0 0 2 2 2 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|433590269|ref|YP_007279765.1| - 3.6e-05 23.2 0.7 8.2e-05 22.0 0.7 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|433590269|ref|YP_007279765.1| - 0.0047 16.6 0.3 0.17 11.6 0.1 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 UPF0122 PF04297.14 gi|433590269|ref|YP_007279765.1| - 0.04 14.2 0.0 0.066 13.5 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_24 PF13412.6 gi|433590269|ref|YP_007279765.1| - 0.054 13.1 0.1 0.12 12.0 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|433590269|ref|YP_007279765.1| - 0.081 12.5 0.1 0.72 9.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_AsnC-type PF13404.6 gi|433590269|ref|YP_007279765.1| - 0.097 12.5 0.2 0.097 12.5 0.2 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain SIR2 PF02146.17 gi|433590270|ref|YP_007279766.1| - 5.4e-38 130.7 0.0 3.4e-19 69.4 0.0 2.1 2 0 0 2 2 2 2 Sir2 family Zn-ribbon_8 PF09723.10 gi|433590270|ref|YP_007279766.1| - 0.21 11.7 1.1 0.44 10.7 1.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain tRNA-synt_2 PF00152.20 gi|433590271|ref|YP_007279767.1| - 9.1e-85 284.5 0.0 1.1e-84 284.2 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|433590271|ref|YP_007279767.1| - 5.4e-15 55.1 0.2 9.9e-15 54.3 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|433590271|ref|YP_007279767.1| - 0.00077 19.0 0.3 0.13 11.7 0.0 2.4 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) Med30 PF11315.8 gi|433590271|ref|YP_007279767.1| - 0.14 12.3 0.0 0.74 10.0 0.0 1.9 2 0 0 2 2 2 0 Mediator complex subunit 30 BOF PF04076.13 gi|433590271|ref|YP_007279767.1| - 0.15 12.1 0.1 0.52 10.4 0.1 1.8 2 0 0 2 2 2 0 Bacterial OB fold (BOF) protein GHMP_kinases_N PF00288.26 gi|433590272|ref|YP_007279768.1| - 2.1e-11 43.9 2.8 4.6e-11 42.8 2.8 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|433590272|ref|YP_007279768.1| - 0.13 12.6 0.0 0.13 12.6 0.0 2.3 3 0 0 3 3 3 0 GHMP kinases C terminal DUF1508 PF07411.12 gi|433590273|ref|YP_007279769.1| - 2.7e-69 228.8 0.5 2e-08 33.9 0.0 13.3 13 0 0 13 13 13 12 Domain of unknown function (DUF1508) DDE_Tnp_IS240 PF13610.6 gi|433590273|ref|YP_007279769.1| - 2.6e-05 24.5 7.9 2.4 8.4 0.0 7.6 5 2 3 8 8 8 1 DDE domain Nucleoporin2 PF04096.14 gi|433590273|ref|YP_007279769.1| - 0.018 15.2 0.5 35 4.5 0.0 4.4 4 1 1 5 5 5 0 Nucleoporin autopeptidase SPOR PF05036.13 gi|433590273|ref|YP_007279769.1| - 0.054 13.9 5.4 11 6.5 0.0 4.9 7 0 0 7 7 7 0 Sporulation related domain VanY PF02557.17 gi|433590273|ref|YP_007279769.1| - 0.18 11.6 0.5 19 5.0 0.0 3.2 3 0 0 3 3 3 0 D-alanyl-D-alanine carboxypeptidase DUF2914 PF11141.8 gi|433590273|ref|YP_007279769.1| - 0.33 10.7 0.0 0.33 10.7 0.0 5.3 6 0 0 6 6 6 0 Protein of unknown function (DUF2914) DMRT-like PF15791.5 gi|433590273|ref|YP_007279769.1| - 0.71 10.3 2.2 2.7 8.5 0.2 2.6 2 0 0 2 2 2 0 Doublesex-and mab-3-related transcription factor C1 and C2 Stimulus_sens_1 PF13756.6 gi|433590273|ref|YP_007279769.1| - 0.93 10.1 4.1 1 10.0 0.0 3.4 4 1 0 4 4 4 0 Stimulus-sensing domain Metal_resist PF13801.6 gi|433590273|ref|YP_007279769.1| - 5.7 7.2 20.8 0.17 12.0 1.3 5.5 5 0 0 5 5 5 0 Heavy-metal resistance PPS_PS PF02006.16 gi|433590274|ref|YP_007279770.1| - 2.9e-74 248.4 1.7 3.6e-74 248.1 1.7 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase RTT107_BRCT_6 PF16771.5 gi|433590274|ref|YP_007279770.1| - 0.043 14.0 0.0 0.071 13.3 0.0 1.3 1 0 0 1 1 1 0 Regulator of Ty1 transposition protein 107 BRCT domain tRNA-synt_1b PF00579.25 gi|433590275|ref|YP_007279771.1| - 8.2e-51 173.1 0.0 1.1e-50 172.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) THOC7 PF05615.13 gi|433590275|ref|YP_007279771.1| - 0.033 14.5 1.0 0.063 13.6 1.0 1.4 1 0 0 1 1 1 0 Tho complex subunit 7 tRNA-synt_1f PF01921.18 gi|433590275|ref|YP_007279771.1| - 0.12 11.3 0.0 12 4.7 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) HTH_11 PF08279.12 gi|433590276|ref|YP_007279772.1| - 1.6e-14 53.6 0.0 2.8e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain BPL_LplA_LipB PF03099.19 gi|433590276|ref|YP_007279772.1| - 3.1e-14 53.0 0.0 4.3e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|433590276|ref|YP_007279772.1| - 4.5e-12 45.7 0.5 8.2e-12 44.8 0.5 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_20 PF12840.7 gi|433590276|ref|YP_007279772.1| - 1.5e-09 37.8 0.1 6.1e-09 35.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433590276|ref|YP_007279772.1| - 4.2e-07 29.7 0.0 6.9e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|433590276|ref|YP_007279772.1| - 7.8e-07 28.6 0.0 1.9e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433590276|ref|YP_007279772.1| - 0.00011 22.1 0.0 0.00045 20.0 0.0 2.1 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|433590276|ref|YP_007279772.1| - 0.0029 17.4 0.1 0.01 15.6 0.1 2.1 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|433590276|ref|YP_007279772.1| - 0.035 13.9 0.0 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_39 PF14090.6 gi|433590276|ref|YP_007279772.1| - 0.041 13.6 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|433590276|ref|YP_007279772.1| - 0.42 10.6 1.6 0.59 10.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Usp PF00582.26 gi|433590277|ref|YP_007279773.1| - 1.5e-36 126.0 0.4 1.8e-36 125.8 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family VAPB_antitox PF02697.14 gi|433590279|ref|YP_007279775.1| - 0.022 15.5 0.3 0.022 15.5 0.3 1.1 1 0 0 1 1 1 0 Putative antitoxin RHH_1 PF01402.21 gi|433590279|ref|YP_007279775.1| - 0.075 13.0 2.7 0.28 11.2 0.8 2.0 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family CARDB PF07705.11 gi|433590281|ref|YP_007279777.1| - 8.3e-11 42.0 24.2 5.6e-07 29.8 1.1 5.3 6 0 0 6 6 6 2 CARDB Big_3_5 PF16640.5 gi|433590281|ref|YP_007279777.1| - 0.0028 17.8 4.8 0.0028 17.8 4.8 8.1 9 1 0 10 10 10 1 Bacterial Ig-like domain (group 3) Cadherin_4 PF17803.1 gi|433590281|ref|YP_007279777.1| - 0.0088 16.7 6.4 0.0088 16.7 6.4 10.7 7 4 1 9 9 9 1 Bacterial cadherin-like domain CIDE-N PF02017.15 gi|433590281|ref|YP_007279777.1| - 0.27 11.3 1.3 23 5.1 0.1 2.8 2 0 0 2 2 2 0 CIDE-N domain BioY PF02632.14 gi|433590282|ref|YP_007279778.1| - 2.1e-35 121.7 19.3 2.1e-35 121.7 19.3 1.4 2 0 0 2 2 2 1 BioY family DUF2269 PF10027.9 gi|433590282|ref|YP_007279778.1| - 0.022 14.8 1.0 0.022 14.8 1.0 1.9 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2269) ABC_tran PF00005.27 gi|433590283|ref|YP_007279779.1| - 2.6e-28 99.2 0.0 3.4e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433590283|ref|YP_007279779.1| - 2.5e-10 40.7 0.8 1.9e-05 24.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|433590283|ref|YP_007279779.1| - 0.00017 21.3 0.1 0.0003 20.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|433590283|ref|YP_007279779.1| - 0.00023 20.7 0.0 0.0014 18.1 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|433590283|ref|YP_007279779.1| - 0.00033 20.8 0.1 0.004 17.4 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|433590283|ref|YP_007279779.1| - 0.00092 18.8 0.3 0.024 14.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433590283|ref|YP_007279779.1| - 0.0011 19.4 0.3 0.0018 18.7 0.3 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|433590283|ref|YP_007279779.1| - 0.011 16.3 0.0 0.015 15.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|433590283|ref|YP_007279779.1| - 0.055 12.7 0.0 0.088 12.1 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|433590283|ref|YP_007279779.1| - 0.1 12.9 0.1 0.17 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|433590283|ref|YP_007279779.1| - 0.14 12.1 0.1 0.24 11.3 0.1 1.3 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|433590283|ref|YP_007279779.1| - 0.16 11.5 0.1 0.28 10.7 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.8 gi|433590283|ref|YP_007279779.1| - 0.25 8.8 0.1 0.34 8.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CbiQ PF02361.16 gi|433590284|ref|YP_007279780.1| - 2e-16 60.3 8.2 3.2e-16 59.6 8.2 1.3 1 1 0 1 1 1 1 Cobalt transport protein DDE_Tnp_1 PF01609.21 gi|433590285|ref|YP_007279781.1| - 6.1e-10 39.1 0.0 1.1e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433590285|ref|YP_007279781.1| - 0.00025 21.0 0.1 0.042 13.9 0.0 2.6 2 0 0 2 2 2 2 Transposase domain (DUF772) DUF3482 PF11981.8 gi|433590285|ref|YP_007279781.1| - 0.00041 19.9 1.2 0.00077 19.0 1.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3482) DDE_Tnp_2 PF04693.12 gi|433590285|ref|YP_007279781.1| - 0.12 11.6 0.0 0.24 10.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Polysacc_deac_1 PF01522.21 gi|433590287|ref|YP_007279783.1| - 1.1e-19 70.6 0.0 2e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|433590287|ref|YP_007279783.1| - 2.6e-05 24.0 0.0 4.9e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Met_10 PF02475.16 gi|433590289|ref|YP_007279785.1| - 1.2e-57 194.8 0.0 1.6e-57 194.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|433590289|ref|YP_007279785.1| - 4.6e-11 42.4 0.0 1.2e-10 41.1 0.0 1.7 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|433590289|ref|YP_007279785.1| - 5.2e-07 30.3 0.0 1.3e-06 29.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433590289|ref|YP_007279785.1| - 9e-06 25.6 0.0 1.6e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|433590289|ref|YP_007279785.1| - 2.4e-05 24.0 0.0 3.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|433590289|ref|YP_007279785.1| - 0.00017 21.2 0.0 0.00031 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|433590289|ref|YP_007279785.1| - 0.0002 21.0 0.0 0.00053 19.7 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|433590289|ref|YP_007279785.1| - 0.00028 20.4 0.0 0.00046 19.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|433590289|ref|YP_007279785.1| - 0.00038 21.1 0.0 0.00091 19.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|433590289|ref|YP_007279785.1| - 0.0012 19.9 0.1 0.0042 18.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433590289|ref|YP_007279785.1| - 0.0046 16.8 0.0 0.0099 15.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|433590289|ref|YP_007279785.1| - 0.013 15.2 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TPR_9 PF13371.6 gi|433590289|ref|YP_007279785.1| - 0.056 13.6 0.5 6.1 7.1 0.1 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat TRM PF02005.16 gi|433590289|ref|YP_007279785.1| - 0.061 12.5 0.0 0.088 12.0 0.0 1.3 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltr_RsmB-F PF01189.17 gi|433590289|ref|YP_007279785.1| - 0.073 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DNA_methylase PF00145.17 gi|433590289|ref|YP_007279785.1| - 0.11 11.9 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase ADH_zinc_N PF00107.26 gi|433590289|ref|YP_007279785.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase MethyltransfD12 PF02086.15 gi|433590289|ref|YP_007279785.1| - 0.2 11.3 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Rieske PF00355.26 gi|433590290|ref|YP_007279786.1| - 3.7e-09 36.4 0.1 4.8e-09 36.1 0.1 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Antifungal_pept PF11410.8 gi|433590290|ref|YP_007279786.1| - 0.12 12.4 1.3 0.23 11.4 1.3 1.5 1 0 0 1 1 1 0 Antifungal peptide TP_methylase PF00590.20 gi|433590291|ref|YP_007279787.1| - 1.5e-21 77.3 3.4 1.9e-21 77.0 3.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases FA_desaturase PF00487.24 gi|433590292|ref|YP_007279788.1| - 0.07 13.0 0.5 0.12 12.2 0.5 1.4 1 0 0 1 1 1 0 Fatty acid desaturase GPI2 PF06432.11 gi|433590292|ref|YP_007279788.1| - 0.11 11.9 0.3 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF1282 PF06930.12 gi|433590292|ref|YP_007279788.1| - 2.5 7.8 11.9 2.5 7.8 7.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1282) MARVEL PF01284.23 gi|433590292|ref|YP_007279788.1| - 7.6 6.6 15.0 1.1 9.3 6.4 2.1 1 1 0 2 2 2 0 Membrane-associating domain Abhydrolase_1 PF00561.20 gi|433590293|ref|YP_007279789.1| - 1.6e-18 67.3 0.1 1.6e-17 64.0 0.0 2.1 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433590293|ref|YP_007279789.1| - 1.9e-17 64.6 8.0 4e-17 63.6 8.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433590293|ref|YP_007279789.1| - 4.8e-14 52.2 0.2 1.8e-13 50.3 0.1 1.8 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|433590293|ref|YP_007279789.1| - 0.0007 18.4 0.0 0.00099 17.9 0.0 1.1 1 0 0 1 1 1 1 Ndr family DUF1057 PF06342.12 gi|433590293|ref|YP_007279789.1| - 0.034 13.2 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) Chlorophyllase2 PF12740.7 gi|433590293|ref|YP_007279789.1| - 0.13 11.1 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme Thioesterase PF00975.20 gi|433590293|ref|YP_007279789.1| - 0.15 12.1 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain PGAP1 PF07819.13 gi|433590293|ref|YP_007279789.1| - 0.26 10.9 0.0 16 5.1 0.0 2.1 2 0 0 2 2 2 0 PGAP1-like protein MFS_1 PF07690.16 gi|433590294|ref|YP_007279790.1| - 2.6e-32 112.1 69.4 6.8e-26 91.0 43.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Iso_dh PF00180.20 gi|433590295|ref|YP_007279791.1| - 2.4e-90 303.2 0.0 2.7e-90 303.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase EamA PF00892.20 gi|433590296|ref|YP_007279792.1| - 6.3e-39 133.3 33.6 8.9e-21 74.5 11.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family Aconitase_C PF00694.19 gi|433590297|ref|YP_007279793.1| - 5.4e-20 72.1 0.0 8.2e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.20 gi|433590298|ref|YP_007279794.1| - 3.1e-145 484.7 0.0 3.5e-145 484.5 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|433590298|ref|YP_007279794.1| - 0.0017 17.1 0.0 0.0031 16.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF521) IlvN PF07991.12 gi|433590300|ref|YP_007279796.1| - 6e-71 237.3 0.1 8.4e-71 236.9 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|433590300|ref|YP_007279796.1| - 9.4e-64 214.1 0.3 1.2e-63 213.7 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.15 gi|433590300|ref|YP_007279796.1| - 5.7e-06 26.6 0.0 1.1e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|433590300|ref|YP_007279796.1| - 2.4e-05 24.8 0.1 5e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|433590300|ref|YP_007279796.1| - 9.5e-05 21.8 0.0 0.00017 21.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|433590300|ref|YP_007279796.1| - 0.014 15.0 0.2 0.024 14.3 0.2 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Mur_ligase PF01225.25 gi|433590300|ref|YP_007279796.1| - 0.092 13.1 0.1 0.24 11.8 0.1 1.7 1 0 0 1 1 1 0 Mur ligase family, catalytic domain ALS_ss_C PF10369.9 gi|433590301|ref|YP_007279797.1| - 1.5e-22 79.6 0.1 2.7e-22 78.8 0.1 1.4 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|433590301|ref|YP_007279797.1| - 6.2e-15 54.8 0.0 1.8e-14 53.3 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|433590301|ref|YP_007279797.1| - 4.6e-14 51.9 0.0 1.3e-13 50.5 0.0 1.8 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|433590301|ref|YP_007279797.1| - 0.0014 19.2 0.0 0.0026 18.3 0.0 1.5 1 0 0 1 1 1 1 ACT domain TPP_enzyme_N PF02776.18 gi|433590302|ref|YP_007279798.1| - 2.4e-50 170.5 0.2 6.6e-50 169.1 0.2 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|433590302|ref|YP_007279798.1| - 1.6e-48 164.3 1.7 2.6e-48 163.7 0.1 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|433590302|ref|YP_007279798.1| - 3.1e-45 153.3 0.0 8.8e-45 151.8 0.0 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|433590302|ref|YP_007279798.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit HMGL-like PF00682.19 gi|433590304|ref|YP_007279800.1| - 1.3e-79 267.5 6.8 1.3e-79 267.5 6.8 1.4 2 0 0 2 2 2 1 HMGL-like Tugs PF17840.1 gi|433590304|ref|YP_007279800.1| - 0.028 14.6 0.5 0.1 12.8 0.1 2.0 2 0 0 2 2 2 0 Tethering Ubl4a to BAGS domain Asp_protease PF09668.10 gi|433590304|ref|YP_007279800.1| - 0.12 12.2 0.1 0.24 11.2 0.1 1.5 1 0 0 1 1 1 0 Aspartyl protease Ferritin PF00210.24 gi|433590305|ref|YP_007279801.1| - 9.6e-23 80.7 1.1 1.1e-22 80.5 1.1 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|433590305|ref|YP_007279801.1| - 4.6e-10 40.0 0.5 5.2e-10 39.9 0.5 1.0 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|433590305|ref|YP_007279801.1| - 0.00099 19.3 0.2 0.0012 19.1 0.2 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.12 gi|433590305|ref|YP_007279801.1| - 0.00099 19.2 3.2 0.0029 17.7 3.2 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF892) DUF2383 PF09537.10 gi|433590305|ref|YP_007279801.1| - 0.0012 19.1 1.1 1.6 9.1 0.1 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF2383) DUF4439 PF14530.6 gi|433590305|ref|YP_007279801.1| - 0.0019 18.9 0.1 0.0023 18.6 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4439) GatB_Yqey PF02637.18 gi|433590305|ref|YP_007279801.1| - 0.052 13.4 0.4 0.087 12.7 0.4 1.5 1 1 0 1 1 1 0 GatB domain DUF349 PF03993.12 gi|433590305|ref|YP_007279801.1| - 0.18 12.1 0.8 2.2 8.6 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) DUF2890 PF11081.8 gi|433590305|ref|YP_007279801.1| - 3.4 7.7 5.6 1.4 9.0 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2890) NiFe_hyd_3_EhaA PF17367.2 gi|433590306|ref|YP_007279802.1| - 0.027 14.6 0.2 0.031 14.4 0.2 1.1 1 0 0 1 1 1 0 NiFe-hydrogenase-type-3 Eha complex subunit A Glyoxalase_6 PF18029.1 gi|433590308|ref|YP_007279804.1| - 1.6e-12 48.1 5.4 3.7e-06 27.7 2.9 2.3 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.25 gi|433590308|ref|YP_007279804.1| - 5.4e-11 42.8 0.0 5.8e-05 23.3 0.0 3.2 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|433590308|ref|YP_007279804.1| - 0.00049 20.0 0.0 0.94 9.4 0.0 3.7 2 2 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|433590308|ref|YP_007279804.1| - 0.0013 19.0 0.1 0.026 14.8 0.1 2.6 2 2 1 3 3 3 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|433590308|ref|YP_007279804.1| - 0.0064 16.6 0.5 0.79 9.8 0.3 2.9 2 1 0 2 2 2 1 Glyoxalase-like domain Acetyltransf_7 PF13508.7 gi|433590308|ref|YP_007279804.1| - 0.034 14.6 0.1 0.47 10.9 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433590308|ref|YP_007279804.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Drf_FH1 PF06346.12 gi|433590310|ref|YP_007279806.1| - 0.043 13.5 0.6 0.065 12.9 0.3 1.5 1 1 0 1 1 1 0 Formin Homology Region 1 RHH_1 PF01402.21 gi|433590311|ref|YP_007279807.1| - 0.0077 16.1 0.1 0.014 15.3 0.0 1.5 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family PG_binding_2 PF08823.11 gi|433590311|ref|YP_007279807.1| - 0.076 13.3 0.2 0.19 12.0 0.1 1.6 2 0 0 2 2 2 0 Putative peptidoglycan binding domain SHOCT PF09851.9 gi|433590311|ref|YP_007279807.1| - 0.19 11.5 2.7 0.34 10.7 2.7 1.5 1 1 0 1 1 1 0 Short C-terminal domain DUF2795 PF11387.8 gi|433590312|ref|YP_007279808.1| - 0.0099 16.1 0.4 0.14 12.4 0.4 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2795) Glycos_transf_2 PF00535.26 gi|433590313|ref|YP_007279809.1| - 1.3e-17 64.2 0.1 1.8e-17 63.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|433590313|ref|YP_007279809.1| - 4.7e-10 39.7 0.0 8.2e-10 38.9 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|433590313|ref|YP_007279809.1| - 0.0026 18.2 0.0 0.0052 17.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 PSII PF00421.19 gi|433590313|ref|YP_007279809.1| - 0.16 10.6 0.6 0.27 9.9 0.6 1.2 1 0 0 1 1 1 0 Photosystem II protein UDPG_MGDP_dh_N PF03721.14 gi|433590314|ref|YP_007279810.1| - 6.1e-52 175.9 0.1 9.3e-52 175.3 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|433590314|ref|YP_007279810.1| - 1e-33 115.4 0.0 1.7e-33 114.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|433590314|ref|YP_007279810.1| - 4.2e-26 91.4 0.1 1.1e-25 90.0 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|433590314|ref|YP_007279810.1| - 4.6e-06 27.1 0.4 0.0031 18.1 0.0 4.1 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|433590314|ref|YP_007279810.1| - 0.00027 20.6 0.0 0.00051 19.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|433590314|ref|YP_007279810.1| - 0.00031 21.3 0.3 0.0052 17.3 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|433590314|ref|YP_007279810.1| - 0.00034 20.6 0.1 0.00063 19.7 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|433590314|ref|YP_007279810.1| - 0.00085 18.6 0.1 0.0015 17.9 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DUF3320 PF11784.8 gi|433590314|ref|YP_007279810.1| - 0.002 18.0 0.2 0.0064 16.4 0.2 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF3320) NAD_Gly3P_dh_N PF01210.23 gi|433590314|ref|YP_007279810.1| - 0.0021 18.0 0.0 0.0045 17.0 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus B12-binding PF02310.19 gi|433590314|ref|YP_007279810.1| - 0.004 17.2 0.4 9.5 6.3 0.1 3.5 2 1 0 2 2 2 1 B12 binding domain NAD_binding_8 PF13450.6 gi|433590314|ref|YP_007279810.1| - 0.022 15.0 0.2 0.061 13.6 0.2 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|433590314|ref|YP_007279810.1| - 0.024 14.0 0.1 0.85 9.0 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.9 gi|433590314|ref|YP_007279810.1| - 0.055 13.3 0.6 0.31 10.9 0.3 2.3 2 0 0 2 2 2 0 Rossmann-like domain TrkA_N PF02254.18 gi|433590314|ref|YP_007279810.1| - 0.1 12.8 3.8 0.15 12.3 0.2 2.9 3 1 0 3 3 3 0 TrkA-N domain NAD_binding_11 PF14833.6 gi|433590314|ref|YP_007279810.1| - 0.13 12.5 0.4 0.47 10.7 0.5 1.8 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Trp_halogenase PF04820.14 gi|433590314|ref|YP_007279810.1| - 0.29 9.9 0.3 0.42 9.4 0.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase DAO PF01266.24 gi|433590314|ref|YP_007279810.1| - 5.9 6.4 7.9 18 4.8 7.9 2.2 1 1 0 1 1 1 0 FAD dependent oxidoreductase NTP_transferase PF00483.23 gi|433590315|ref|YP_007279811.1| - 1.8e-41 142.4 0.0 2.2e-41 142.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|433590315|ref|YP_007279811.1| - 4.5e-13 49.9 0.0 5.6e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|433590315|ref|YP_007279811.1| - 2.8e-06 27.2 0.0 3.7e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Polysacc_synt PF01943.17 gi|433590316|ref|YP_007279812.1| - 2.3e-20 73.1 27.9 2.3e-20 73.1 27.9 2.9 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|433590316|ref|YP_007279812.1| - 7.7e-20 71.4 24.8 7.7e-20 71.4 24.8 3.7 3 2 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|433590316|ref|YP_007279812.1| - 1.2e-13 51.0 9.5 1.2e-13 51.0 9.5 2.6 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|433590316|ref|YP_007279812.1| - 3.1e-09 36.7 4.8 3.1e-09 36.7 4.8 4.0 2 2 2 4 4 4 2 MatE MurJ PF03023.14 gi|433590316|ref|YP_007279812.1| - 1.5e-08 33.7 27.3 1.5e-08 33.7 27.3 2.0 1 1 1 2 2 2 1 Lipid II flippase MurJ Epimerase PF01370.21 gi|433590317|ref|YP_007279813.1| - 1.5e-52 178.5 0.0 1.8e-52 178.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|433590317|ref|YP_007279813.1| - 2.3e-51 175.2 0.0 3e-51 174.8 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|433590317|ref|YP_007279813.1| - 2.4e-14 53.0 0.0 3.2e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|433590317|ref|YP_007279813.1| - 9.7e-12 44.6 0.0 1.6e-11 43.9 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|433590317|ref|YP_007279813.1| - 1.1e-10 41.2 0.0 0.00014 21.2 0.0 2.3 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|433590317|ref|YP_007279813.1| - 2.2e-10 40.2 0.0 0.0002 20.6 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|433590317|ref|YP_007279813.1| - 0.0002 20.9 0.0 0.00048 19.6 0.0 1.6 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433590317|ref|YP_007279813.1| - 0.031 14.2 0.0 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 KR domain NAD_binding_10 PF13460.6 gi|433590317|ref|YP_007279813.1| - 0.081 12.8 0.0 0.27 11.1 0.0 1.9 2 1 0 2 2 2 0 NAD(P)H-binding UDPG_MGDP_dh_N PF03721.14 gi|433590317|ref|YP_007279813.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sulfatase PF00884.23 gi|433590318|ref|YP_007279814.1| - 2.9e-42 145.1 0.0 5.1e-42 144.3 0.0 1.4 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|433590318|ref|YP_007279814.1| - 1e-14 54.9 0.1 2.1e-07 30.9 0.1 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|433590318|ref|YP_007279814.1| - 0.00084 18.1 0.0 0.0012 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|433590318|ref|YP_007279814.1| - 0.016 14.3 0.1 0.03 13.4 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1501) DUF563 PF04577.14 gi|433590319|ref|YP_007279815.1| - 3.3e-42 145.0 0.0 4.8e-42 144.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF563) DDE_Tnp_1 PF01609.21 gi|433590320|ref|YP_007279816.1| - 2.5e-21 76.3 0.0 3.7e-21 75.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF563 PF04577.14 gi|433590321|ref|YP_007279817.1| - 8.9e-37 127.3 0.0 1.2e-36 126.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF563) PglZ PF08665.12 gi|433590322|ref|YP_007279818.1| - 1.7e-05 25.0 0.1 0.00011 22.3 0.0 1.9 2 0 0 2 2 2 1 PglZ domain Sulfatase PF00884.23 gi|433590322|ref|YP_007279818.1| - 0.00037 20.0 0.0 0.00048 19.6 0.0 1.1 1 0 0 1 1 1 1 Sulfatase DASH_Dam1 PF08653.10 gi|433590322|ref|YP_007279818.1| - 0.26 11.1 1.6 0.93 9.3 0.3 2.2 2 0 0 2 2 2 0 DASH complex subunit Dam1 V_cholerae_RfbT PF05575.11 gi|433590323|ref|YP_007279819.1| - 0.005 16.2 0.0 0.0086 15.4 0.0 1.3 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|433590323|ref|YP_007279819.1| - 0.0088 15.8 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Glycos_transf_1 PF00534.20 gi|433590324|ref|YP_007279820.1| - 9.9e-33 113.1 0.0 1.5e-32 112.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433590324|ref|YP_007279820.1| - 4.1e-31 108.2 0.0 7.4e-31 107.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|433590324|ref|YP_007279820.1| - 2.4e-13 50.4 0.3 2e-12 47.4 0.1 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433590324|ref|YP_007279820.1| - 1.4e-12 48.3 0.7 1.4e-12 48.3 0.7 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|433590324|ref|YP_007279820.1| - 2.6e-06 27.7 0.0 5.4e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|433590325|ref|YP_007279821.1| - 3.4e-22 78.8 0.0 5.6e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433590325|ref|YP_007279821.1| - 2.3e-15 57.2 0.0 4.9e-15 56.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|433590325|ref|YP_007279821.1| - 1.3e-10 41.5 1.3 2.1e-10 40.9 1.3 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|433590326|ref|YP_007279822.1| - 1.6e-22 80.1 0.5 2.3e-22 79.6 0.5 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|433590326|ref|YP_007279822.1| - 4.5e-12 46.4 1.4 6.5e-12 45.8 1.4 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|433590326|ref|YP_007279822.1| - 9.3e-10 38.4 0.3 3.7e-06 26.6 0.1 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|433590326|ref|YP_007279822.1| - 0.031 14.2 0.7 0.057 13.3 0.3 1.8 2 1 0 2 2 2 0 Glycosyl transferase family group 2 NepR PF18557.1 gi|433590326|ref|YP_007279822.1| - 0.098 12.3 0.2 0.22 11.2 0.2 1.6 1 0 0 1 1 1 0 Anti-sigma factor NepR AglB_L1 PF18079.1 gi|433590327|ref|YP_007279823.1| - 6.5e-28 96.9 4.1 1.5e-27 95.7 4.1 1.7 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|433590327|ref|YP_007279823.1| - 4.2e-21 75.4 13.0 1.3e-20 73.8 13.0 1.9 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF368 PF04018.13 gi|433590328|ref|YP_007279824.1| - 8.1e-67 225.4 15.3 8.1e-67 225.4 15.3 1.5 1 1 1 2 2 2 1 Domain of unknown function (DUF368) AAA_16 PF13191.6 gi|433590329|ref|YP_007279825.1| - 1.9e-07 31.6 3.8 4.7e-06 27.1 3.8 2.8 1 1 0 1 1 1 1 AAA ATPase domain HTH_IclR PF09339.10 gi|433590329|ref|YP_007279825.1| - 0.0032 17.2 0.0 0.0079 16.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA_22 PF13401.6 gi|433590329|ref|YP_007279825.1| - 0.0065 16.7 0.0 0.015 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain DprA_WH PF17782.1 gi|433590329|ref|YP_007279825.1| - 0.009 16.1 1.0 0.009 16.1 1.0 2.9 3 1 1 4 4 4 1 DprA winged helix domain Guanylate_kin PF00625.21 gi|433590329|ref|YP_007279825.1| - 0.025 14.2 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 Guanylate kinase MarR PF01047.22 gi|433590329|ref|YP_007279825.1| - 0.046 13.6 0.0 0.14 12.1 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|433590329|ref|YP_007279825.1| - 0.074 13.0 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|433590329|ref|YP_007279825.1| - 0.17 11.8 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CCG PF02754.16 gi|433590330|ref|YP_007279826.1| - 9.3e-25 86.7 0.8 9.9e-12 44.9 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|433590330|ref|YP_007279826.1| - 1.2e-08 35.2 7.6 1.2e-08 35.2 7.6 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|433590330|ref|YP_007279826.1| - 3.2e-06 27.6 9.1 3.2e-06 27.6 9.1 3.2 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433590330|ref|YP_007279826.1| - 0.0015 18.6 17.1 0.01 16.0 12.8 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|433590330|ref|YP_007279826.1| - 0.0035 17.9 18.1 0.012 16.2 14.4 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433590330|ref|YP_007279826.1| - 0.0052 16.9 16.6 0.0059 16.7 12.5 3.0 3 1 0 3 3 3 1 4Fe-4S dicluster domain zf-CSL PF05207.13 gi|433590330|ref|YP_007279826.1| - 0.0089 15.7 9.1 0.17 11.7 0.0 4.3 5 0 0 5 5 5 1 CSL zinc finger DDE_Tnp_ISAZ013 PF07592.11 gi|433590330|ref|YP_007279826.1| - 0.035 13.1 0.0 0.056 12.4 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain Fer4_21 PF14697.6 gi|433590330|ref|YP_007279826.1| - 0.038 14.1 9.4 0.48 10.6 0.9 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain DUF3390 PF11870.8 gi|433590330|ref|YP_007279826.1| - 0.083 13.3 0.0 0.15 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) Fer4 PF00037.27 gi|433590330|ref|YP_007279826.1| - 0.12 12.3 14.0 0.11 12.3 2.2 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|433590330|ref|YP_007279826.1| - 0.63 11.0 16.1 1.4 9.9 2.8 3.2 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain FAD_binding_2 PF00890.24 gi|433590331|ref|YP_007279827.1| - 6.8e-40 137.4 2.6 7.9e-40 137.2 2.6 1.0 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|433590331|ref|YP_007279827.1| - 1.7e-07 31.0 2.4 1.8e-06 27.6 1.7 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|433590331|ref|YP_007279827.1| - 6.6e-07 28.7 0.3 6.6e-07 28.7 0.3 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|433590331|ref|YP_007279827.1| - 7.9e-07 28.6 0.1 0.00023 20.5 0.2 2.9 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|433590331|ref|YP_007279827.1| - 2.2e-06 27.5 7.2 3.8e-05 23.4 7.2 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|433590331|ref|YP_007279827.1| - 0.00018 22.0 0.0 0.021 15.4 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|433590331|ref|YP_007279827.1| - 0.0003 19.6 2.4 0.00057 18.7 0.1 2.2 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|433590331|ref|YP_007279827.1| - 0.00099 18.4 0.4 0.0018 17.6 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|433590331|ref|YP_007279827.1| - 0.0033 17.6 0.9 0.015 15.5 0.5 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|433590331|ref|YP_007279827.1| - 0.023 13.9 0.2 0.037 13.3 0.2 1.3 1 0 0 1 1 1 0 Thi4 family Pyr_redox_3 PF13738.6 gi|433590331|ref|YP_007279827.1| - 0.047 12.9 0.2 0.095 11.9 0.2 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|433590331|ref|YP_007279827.1| - 0.074 12.3 0.5 0.13 11.6 0.5 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|433590331|ref|YP_007279827.1| - 0.093 11.8 0.2 0.16 11.0 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|433590331|ref|YP_007279827.1| - 0.19 11.6 0.2 0.33 10.8 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|433590332|ref|YP_007279828.1| - 8.7e-53 180.1 4.8 1.1e-52 179.7 4.8 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|433590332|ref|YP_007279828.1| - 3e-10 40.3 4.1 1.7e-09 37.9 3.9 2.5 2 0 0 2 2 2 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|433590332|ref|YP_007279828.1| - 1.9e-07 30.6 0.2 1.1e-06 28.1 0.2 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|433590332|ref|YP_007279828.1| - 7e-07 28.7 3.0 1.4e-06 27.7 3.0 1.5 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|433590332|ref|YP_007279828.1| - 1.2e-06 28.0 6.0 7e-06 25.5 6.0 2.0 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|433590332|ref|YP_007279828.1| - 0.00031 21.2 0.4 0.0019 18.7 0.3 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|433590332|ref|YP_007279828.1| - 0.01 16.1 0.9 0.034 14.4 0.6 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DAO_C PF16901.5 gi|433590332|ref|YP_007279828.1| - 0.01 15.7 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase Pyr_redox_3 PF13738.6 gi|433590332|ref|YP_007279828.1| - 0.024 13.9 0.8 0.068 12.4 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|433590332|ref|YP_007279828.1| - 0.027 14.4 0.1 0.046 13.6 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|433590332|ref|YP_007279828.1| - 0.034 13.8 0.3 0.063 12.9 0.3 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA YbjQ_1 PF01906.17 gi|433590332|ref|YP_007279828.1| - 0.061 14.0 0.0 0.16 12.6 0.0 1.7 1 0 0 1 1 1 0 Putative heavy-metal-binding Thi4 PF01946.17 gi|433590332|ref|YP_007279828.1| - 0.11 11.7 1.7 0.18 11.0 0.2 1.9 2 0 0 2 2 2 0 Thi4 family GIDA PF01134.22 gi|433590332|ref|YP_007279828.1| - 0.14 11.2 0.9 0.26 10.3 0.2 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|433590332|ref|YP_007279828.1| - 0.2 11.0 8.0 2.7 7.3 8.1 2.1 1 1 0 1 1 1 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|433590332|ref|YP_007279828.1| - 0.32 10.0 3.1 0.22 10.6 0.1 2.1 3 0 0 3 3 3 0 Lycopene cyclase protein P_C PF06640.11 gi|433590332|ref|YP_007279828.1| - 0.39 10.8 3.7 9.2 6.4 0.3 2.5 2 0 0 2 2 2 0 P protein C-terminus FGGY_N PF00370.21 gi|433590333|ref|YP_007279829.1| - 1.1e-80 270.7 0.0 1.5e-80 270.3 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|433590333|ref|YP_007279829.1| - 1.4e-59 201.2 0.3 2.8e-59 200.2 0.3 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|433590333|ref|YP_007279829.1| - 0.0011 18.5 0.3 0.0028 17.2 0.0 1.8 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family PAP2 PF01569.21 gi|433590334|ref|YP_007279830.1| - 0.011 15.5 0.8 0.045 13.5 0.8 2.0 1 0 0 1 1 1 0 PAP2 superfamily Hydrolase_3 PF08282.12 gi|433590335|ref|YP_007279831.1| - 9.7e-25 87.8 0.0 1e-16 61.4 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433590335|ref|YP_007279831.1| - 8.5e-10 39.3 0.1 1.3e-08 35.5 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|433590335|ref|YP_007279831.1| - 3e-06 27.0 0.0 6.4e-05 22.6 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|433590335|ref|YP_007279831.1| - 0.00014 22.3 6.1 0.092 13.1 0.1 3.4 3 1 1 4 4 4 2 haloacid dehalogenase-like hydrolase LAL_C2 PF18603.1 gi|433590335|ref|YP_007279831.1| - 0.046 13.9 0.9 0.046 13.9 0.9 2.2 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 BacteriocIIc_cy PF12173.8 gi|433590335|ref|YP_007279831.1| - 0.11 12.7 0.3 5.4 7.3 0.0 2.4 1 1 1 2 2 2 0 Bacteriocin class IIc cyclic gassericin A-like CitMHS PF03600.16 gi|433590338|ref|YP_007279834.1| - 0.099 11.8 0.7 0.1 11.8 0.7 1.0 1 0 0 1 1 1 0 Citrate transporter Wyosine_form PF08608.12 gi|433590339|ref|YP_007279835.1| - 1.6e-20 73.2 0.0 3.6e-20 72.1 0.0 1.7 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|433590339|ref|YP_007279835.1| - 2.4e-20 73.6 0.6 1.2e-19 71.3 0.6 1.9 1 1 0 1 1 1 1 Radical SAM superfamily FliG_C PF01706.16 gi|433590339|ref|YP_007279835.1| - 0.21 11.8 0.0 0.96 9.7 0.0 1.9 2 0 0 2 2 2 0 FliG C-terminal domain DICT PF10069.9 gi|433590340|ref|YP_007279836.1| - 0.00043 20.1 0.0 0.0007 19.4 0.0 1.3 1 0 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system CTP-dep_RFKase PF01982.16 gi|433590341|ref|YP_007279837.1| - 5.5e-48 162.0 0.0 8.5e-48 161.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.7 gi|433590341|ref|YP_007279837.1| - 4.6e-08 33.0 1.1 8.1e-08 32.2 1.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433590341|ref|YP_007279837.1| - 1.7e-05 24.6 0.4 3.4e-05 23.6 0.4 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|433590341|ref|YP_007279837.1| - 1.9e-05 24.1 0.2 3.1e-05 23.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433590341|ref|YP_007279837.1| - 0.00015 21.5 0.6 0.00015 21.5 0.6 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433590341|ref|YP_007279837.1| - 0.00051 20.0 0.1 0.001 19.0 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|433590341|ref|YP_007279837.1| - 0.00081 19.3 0.1 0.0016 18.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|433590341|ref|YP_007279837.1| - 0.0014 18.5 0.1 0.0027 17.6 0.1 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|433590341|ref|YP_007279837.1| - 0.002 18.3 0.0 0.0039 17.3 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|433590341|ref|YP_007279837.1| - 0.006 17.1 0.1 0.0092 16.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|433590341|ref|YP_007279837.1| - 0.0095 15.7 0.1 0.017 14.9 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_1 PF00126.27 gi|433590341|ref|YP_007279837.1| - 0.013 15.5 0.1 0.026 14.5 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 gi|433590341|ref|YP_007279837.1| - 0.056 13.3 0.8 0.09 12.6 0.8 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Dimerisation PF08100.11 gi|433590341|ref|YP_007279837.1| - 0.093 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain Replic_Relax PF13814.6 gi|433590341|ref|YP_007279837.1| - 0.11 12.6 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation GntR PF00392.21 gi|433590341|ref|YP_007279837.1| - 0.12 12.0 0.3 0.23 11.1 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DHBP_synthase PF00926.19 gi|433590342|ref|YP_007279838.1| - 3.8e-57 192.9 0.1 4.4e-57 192.7 0.1 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Aminotran_4 PF01063.19 gi|433590343|ref|YP_007279839.1| - 1.4e-48 165.7 0.0 1.6e-48 165.5 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV DUF502 PF04367.13 gi|433590344|ref|YP_007279840.1| - 4.4e-20 71.5 0.2 8.9e-20 70.6 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF502) CopK PF11525.8 gi|433590344|ref|YP_007279840.1| - 0.12 12.0 0.1 0.75 9.5 0.0 2.2 1 1 1 2 2 2 0 Copper resistance protein K MFS_1 PF07690.16 gi|433590345|ref|YP_007279841.1| - 7.3e-10 38.3 57.2 1.3e-05 24.3 33.0 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily SpoIIM PF01944.17 gi|433590346|ref|YP_007279842.1| - 4.2e-27 95.1 9.3 4.2e-27 95.1 9.3 3.3 2 1 0 2 2 2 1 Stage II sporulation protein M SnoaL_2 PF12680.7 gi|433590347|ref|YP_007279843.1| - 4.9e-18 65.7 6.3 5.5e-18 65.5 6.3 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 gi|433590347|ref|YP_007279843.1| - 7.1e-07 29.1 1.5 2.7e-06 27.2 1.5 1.8 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase DUF4440 PF14534.6 gi|433590347|ref|YP_007279843.1| - 4.6e-06 27.0 1.1 5.9e-06 26.6 1.1 1.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.6 gi|433590347|ref|YP_007279843.1| - 0.0022 18.1 0.6 0.0026 17.9 0.6 1.2 1 0 0 1 1 1 1 SnoaL-like domain LEH PF07858.12 gi|433590347|ref|YP_007279843.1| - 0.0035 17.4 0.1 0.0049 17.0 0.1 1.2 1 0 0 1 1 1 1 Limonene-1,2-epoxide hydrolase catalytic domain SnoaL_3 PF13474.6 gi|433590347|ref|YP_007279843.1| - 0.02 15.1 0.1 0.022 15.0 0.1 1.3 1 1 0 1 1 1 0 SnoaL-like domain NTF2 PF02136.20 gi|433590347|ref|YP_007279843.1| - 0.033 14.7 0.0 0.051 14.2 0.0 1.3 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain Lumazine_bd_2 PF12893.7 gi|433590347|ref|YP_007279843.1| - 0.1 13.2 0.1 0.14 12.8 0.1 1.1 1 0 0 1 1 1 0 Putative lumazine-binding DUF4829 PF16111.5 gi|433590347|ref|YP_007279843.1| - 0.25 12.2 0.0 0.31 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4829) AhpC-TSA PF00578.21 gi|433590348|ref|YP_007279844.1| - 6.7e-26 90.6 0.0 1.1e-25 90.0 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|433590348|ref|YP_007279844.1| - 4.4e-15 55.7 0.0 6.8e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|433590348|ref|YP_007279844.1| - 0.001 18.7 0.1 0.0021 17.7 0.1 1.5 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Ribo_biogen_C PF04034.13 gi|433590349|ref|YP_007279845.1| - 4.6e-45 152.4 0.0 5.6e-45 152.2 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|433590349|ref|YP_007279845.1| - 9.2e-05 22.2 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Ribosomal_L40e PF01020.17 gi|433590351|ref|YP_007279847.1| - 3.8e-08 33.1 7.6 4.7e-08 32.8 7.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|433590351|ref|YP_007279847.1| - 0.00011 21.8 1.4 0.00014 21.4 1.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-CHY PF05495.12 gi|433590351|ref|YP_007279847.1| - 0.0013 19.2 1.4 0.0013 19.2 1.4 1.1 1 0 0 1 1 1 1 CHY zinc finger DZR PF12773.7 gi|433590351|ref|YP_007279847.1| - 0.0014 18.6 1.2 0.0015 18.5 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|433590351|ref|YP_007279847.1| - 0.0061 15.9 0.8 0.0078 15.6 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L37e PF01907.19 gi|433590351|ref|YP_007279847.1| - 0.0067 16.6 3.3 0.0086 16.2 3.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e DNA_RNApol_7kD PF03604.13 gi|433590351|ref|YP_007279847.1| - 0.0069 16.0 5.3 0.011 15.4 5.3 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|433590351|ref|YP_007279847.1| - 0.055 13.5 1.4 0.056 13.5 1.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Bac_rhodopsin PF01036.18 gi|433590352|ref|YP_007279848.1| - 1.3e-56 191.7 24.7 1.6e-56 191.4 24.7 1.1 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Lactamase_B PF00753.27 gi|433590353|ref|YP_007279849.1| - 3.9e-09 36.8 14.3 1.4e-07 31.7 14.3 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433590353|ref|YP_007279849.1| - 0.00044 19.8 5.4 0.0032 17.0 5.3 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|433590353|ref|YP_007279849.1| - 0.00064 19.6 2.5 0.017 15.0 0.8 2.0 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Poly_export PF02563.16 gi|433590353|ref|YP_007279849.1| - 0.039 14.2 0.0 0.067 13.4 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis/export protein DUF1967 PF09269.11 gi|433590353|ref|YP_007279849.1| - 0.083 12.8 0.1 0.33 10.9 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1967) ACP PF06857.11 gi|433590353|ref|YP_007279849.1| - 0.12 12.7 0.1 35 4.7 0.0 3.1 3 1 1 4 4 4 0 Malonate decarboxylase delta subunit (MdcD) DUF99 PF01949.16 gi|433590355|ref|YP_007279851.1| - 1.1e-59 200.9 0.1 1.3e-59 200.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 UDG PF03167.19 gi|433590356|ref|YP_007279852.1| - 6.1e-37 127.0 0.0 7.5e-37 126.7 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF4199 PF13858.6 gi|433590357|ref|YP_007279853.1| - 0.039 14.4 2.0 0.42 11.0 1.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) GATase PF00117.28 gi|433590358|ref|YP_007279854.1| - 1.3e-23 83.8 0.0 1.6e-23 83.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|433590358|ref|YP_007279854.1| - 1.3e-09 38.0 0.0 2e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|433590358|ref|YP_007279854.1| - 7.5e-06 25.9 0.0 2.8e-05 24.1 0.0 1.7 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|433590358|ref|YP_007279854.1| - 0.00031 20.6 1.0 0.0057 16.4 1.0 2.4 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|433590358|ref|YP_007279854.1| - 0.0056 16.5 0.0 0.0081 16.0 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_5 PF13507.6 gi|433590358|ref|YP_007279854.1| - 0.043 12.9 0.0 0.16 11.0 0.0 2.0 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain ThuA PF06283.11 gi|433590358|ref|YP_007279854.1| - 0.048 13.9 0.0 0.1 12.8 0.0 1.4 1 1 0 1 1 1 0 Trehalose utilisation CclA_1 PF16942.5 gi|433590359|ref|YP_007279855.1| - 0.029 14.6 0.0 0.037 14.3 0.0 1.1 1 0 0 1 1 1 0 Putative cyclic bacteriocin Cdc6_C PF09079.11 gi|433590360|ref|YP_007279856.1| - 2.8e-19 68.9 0.2 1.2e-18 66.8 0.0 2.1 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|433590360|ref|YP_007279856.1| - 6e-13 49.3 0.3 1.8e-12 47.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433590360|ref|YP_007279856.1| - 4.2e-09 37.0 1.8 8.7e-09 36.0 0.1 2.3 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|433590360|ref|YP_007279856.1| - 1e-06 29.2 0.1 3.5e-06 27.5 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|433590360|ref|YP_007279856.1| - 3.5e-05 23.1 0.0 6.1e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TniB PF05621.11 gi|433590360|ref|YP_007279856.1| - 6.2e-05 22.5 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein Sigma54_activ_2 PF14532.6 gi|433590360|ref|YP_007279856.1| - 8e-05 22.8 0.1 0.0027 17.8 0.0 2.5 2 1 1 3 3 3 1 Sigma-54 interaction domain Sigma54_activat PF00158.26 gi|433590360|ref|YP_007279856.1| - 0.00015 21.5 0.0 0.00031 20.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|433590360|ref|YP_007279856.1| - 0.0013 18.9 0.1 0.0026 17.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DEAD PF00270.29 gi|433590360|ref|YP_007279856.1| - 0.0029 17.4 2.0 0.2 11.4 2.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_10 PF12846.7 gi|433590360|ref|YP_007279856.1| - 0.0055 15.7 0.4 0.033 13.1 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain ATPase_2 PF01637.18 gi|433590360|ref|YP_007279856.1| - 0.0091 15.9 0.0 0.026 14.4 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|433590360|ref|YP_007279856.1| - 0.01 15.8 0.2 0.048 13.6 0.2 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|433590360|ref|YP_007279856.1| - 0.014 14.8 0.0 0.025 13.9 0.0 1.5 1 0 0 1 1 1 0 KaiC DUF87 PF01935.17 gi|433590360|ref|YP_007279856.1| - 0.015 15.4 0.9 0.38 10.8 0.1 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain NACHT PF05729.12 gi|433590360|ref|YP_007279856.1| - 0.018 15.0 0.0 0.056 13.3 0.0 1.8 2 0 0 2 2 2 0 NACHT domain FtsK_SpoIIIE PF01580.18 gi|433590360|ref|YP_007279856.1| - 0.021 14.2 0.1 0.25 10.6 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family IstB_IS21 PF01695.17 gi|433590360|ref|YP_007279856.1| - 0.03 14.0 0.7 0.17 11.6 0.1 2.3 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_assoc_2 PF16193.5 gi|433590360|ref|YP_007279856.1| - 0.059 13.7 2.0 0.34 11.3 0.4 2.5 1 1 1 2 2 2 0 AAA C-terminal domain RNA_helicase PF00910.22 gi|433590360|ref|YP_007279856.1| - 0.06 13.7 0.1 0.55 10.6 0.0 2.3 2 0 0 2 2 2 0 RNA helicase PhoH PF02562.16 gi|433590360|ref|YP_007279856.1| - 0.093 12.2 0.1 11 5.4 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein KAP_NTPase PF07693.14 gi|433590360|ref|YP_007279856.1| - 0.16 11.2 0.2 0.45 9.7 0.0 1.7 1 1 1 2 2 2 0 KAP family P-loop domain AAA_7 PF12775.7 gi|433590360|ref|YP_007279856.1| - 0.18 11.3 0.0 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region SWIM PF04434.17 gi|433590361|ref|YP_007279857.1| - 0.076 12.7 3.0 1 9.1 3.0 2.1 1 1 0 1 1 1 0 SWIM zinc finger TRM PF02005.16 gi|433590362|ref|YP_007279858.1| - 3.9e-84 283.0 0.0 4.4e-84 282.8 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|433590362|ref|YP_007279858.1| - 5e-06 26.2 0.0 8.4e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|433590362|ref|YP_007279858.1| - 5.6e-06 26.0 0.0 8.4e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|433590362|ref|YP_007279858.1| - 0.00043 20.9 0.2 0.0013 19.4 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433590362|ref|YP_007279858.1| - 0.0017 18.2 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|433590362|ref|YP_007279858.1| - 0.0059 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|433590362|ref|YP_007279858.1| - 0.0079 15.9 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Zn-ribbon_8 PF09723.10 gi|433590362|ref|YP_007279858.1| - 0.27 11.4 1.5 0.55 10.4 0.5 2.0 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|433590363|ref|YP_007279859.1| - 0.00058 19.8 1.4 0.8 9.7 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|433590363|ref|YP_007279859.1| - 0.04 13.3 4.3 1.9 8.0 0.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|433590363|ref|YP_007279859.1| - 0.041 13.6 2.9 3.5 7.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|433590363|ref|YP_007279859.1| - 0.042 13.4 5.3 1.2 8.7 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|433590363|ref|YP_007279859.1| - 0.055 13.6 2.8 5.2 7.3 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2_3 PF13878.6 gi|433590363|ref|YP_007279859.1| - 0.07 13.0 2.4 2 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-ACC PF17848.1 gi|433590363|ref|YP_007279859.1| - 0.075 13.1 2.4 3.4 7.8 0.0 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-TFIIB PF13453.6 gi|433590363|ref|YP_007279859.1| - 0.086 12.2 4.0 0.14 11.5 0.2 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-IS66 PF13005.7 gi|433590363|ref|YP_007279859.1| - 0.092 13.2 4.3 0.95 9.9 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-ISL3 PF14690.6 gi|433590363|ref|YP_007279859.1| - 0.092 13.4 6.5 1.1 10.0 0.8 2.3 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2752 PF10825.8 gi|433590363|ref|YP_007279859.1| - 0.11 12.6 3.0 1.1 9.4 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) OrfB_Zn_ribbon PF07282.11 gi|433590363|ref|YP_007279859.1| - 0.13 12.2 2.0 5.9 6.9 0.1 2.1 1 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-HYPF PF07503.12 gi|433590363|ref|YP_007279859.1| - 0.17 11.7 5.4 0.67 9.8 0.9 2.3 2 0 0 2 2 2 0 HypF finger Rubredoxin PF00301.20 gi|433590363|ref|YP_007279859.1| - 0.18 11.9 3.5 2.5 8.2 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin DUF35_N PF12172.8 gi|433590363|ref|YP_007279859.1| - 0.32 10.9 5.1 4.7 7.2 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ogr_Delta PF04606.12 gi|433590363|ref|YP_007279859.1| - 0.48 10.4 0.1 0.48 10.4 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-Mss51 PF13824.6 gi|433590363|ref|YP_007279859.1| - 0.49 10.5 5.0 4.2 7.5 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 YhfH PF14149.6 gi|433590363|ref|YP_007279859.1| - 0.49 10.4 6.4 0.81 9.7 0.2 2.2 2 0 0 2 2 2 0 YhfH-like protein zf_UBZ PF18439.1 gi|433590363|ref|YP_007279859.1| - 4.1 7.1 4.8 7.2 6.3 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Virul_fac_BrkB PF03631.15 gi|433590364|ref|YP_007279860.1| - 3.2e-41 141.7 25.4 3.2e-41 141.7 25.4 2.0 2 0 0 2 2 2 1 Virulence factor BrkB MAD PF05557.13 gi|433590364|ref|YP_007279860.1| - 0.078 11.3 0.8 0.1 10.9 0.8 1.0 1 0 0 1 1 1 0 Mitotic checkpoint protein Vir_act_alpha_C PF10400.9 gi|433590364|ref|YP_007279860.1| - 0.29 11.9 2.8 0.27 11.9 0.7 2.0 2 1 0 2 2 2 0 Virulence activator alpha C-term DUF2207 PF09972.9 gi|433590364|ref|YP_007279860.1| - 2.1 7.0 0.0 2.1 7.0 0.0 2.9 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) Abhydrolase_6 PF12697.7 gi|433590365|ref|YP_007279861.1| - 3.2e-23 83.5 2.6 4e-23 83.2 2.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|433590365|ref|YP_007279861.1| - 1.2e-15 57.9 0.0 1.2e-12 48.1 0.0 2.2 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|433590365|ref|YP_007279861.1| - 3.9e-13 49.2 0.1 2.3e-12 46.7 0.1 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 UPF0227 PF05728.12 gi|433590365|ref|YP_007279861.1| - 0.00011 22.2 0.0 0.00035 20.6 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0227) Esterase PF00756.20 gi|433590365|ref|YP_007279861.1| - 0.001 18.8 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Ndr PF03096.14 gi|433590365|ref|YP_007279861.1| - 0.045 12.4 0.0 0.059 12.1 0.0 1.2 1 0 0 1 1 1 0 Ndr family Ser_hydrolase PF06821.13 gi|433590365|ref|YP_007279861.1| - 0.12 12.3 0.0 4.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Serine hydrolase DCD PF06559.11 gi|433590367|ref|YP_007279863.1| - 2.2e-16 59.6 0.0 5.5e-14 51.7 0.0 2.0 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|433590367|ref|YP_007279863.1| - 1.4e-13 50.6 0.0 2e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 dUTPase PTH2 PF01981.16 gi|433590369|ref|YP_007279865.1| - 3.6e-40 136.9 0.0 4e-40 136.8 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 EamA PF00892.20 gi|433590370|ref|YP_007279866.1| - 5.3e-35 120.6 34.4 3.3e-20 72.7 11.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family HTH_Crp_2 PF13545.6 gi|433590371|ref|YP_007279867.1| - 0.0002 21.3 0.1 0.00044 20.2 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|433590371|ref|YP_007279867.1| - 0.00025 20.8 0.1 0.00074 19.3 0.1 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF1724 PF08350.10 gi|433590371|ref|YP_007279867.1| - 0.0018 18.4 0.0 0.003 17.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) MarR_2 PF12802.7 gi|433590371|ref|YP_007279867.1| - 0.0024 17.7 0.2 0.0071 16.2 0.2 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|433590371|ref|YP_007279867.1| - 0.0025 17.4 0.0 0.0059 16.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Trp_repressor PF01371.19 gi|433590371|ref|YP_007279867.1| - 0.0035 17.4 0.1 0.019 15.1 0.0 2.0 2 0 0 2 2 2 1 Trp repressor protein HTH_5 PF01022.20 gi|433590371|ref|YP_007279867.1| - 0.0036 17.1 0.0 0.0081 16.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|433590371|ref|YP_007279867.1| - 0.015 15.1 0.7 0.049 13.4 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_7 PF02796.15 gi|433590371|ref|YP_007279867.1| - 0.038 14.1 0.0 0.089 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR PF01047.22 gi|433590371|ref|YP_007279867.1| - 0.079 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|433590371|ref|YP_007279867.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB LRV PF01816.17 gi|433590371|ref|YP_007279867.1| - 1.5 9.4 6.4 1 9.9 0.2 3.7 3 0 0 3 3 3 0 Leucine rich repeat variant Spermine_synth PF01564.17 gi|433590372|ref|YP_007279868.1| - 1.9e-09 37.2 0.1 3.2e-09 36.5 0.1 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain CMAS PF02353.20 gi|433590372|ref|YP_007279868.1| - 0.17 11.2 0.0 0.25 10.6 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF4131 PF13567.6 gi|433590372|ref|YP_007279868.1| - 1.6 8.3 4.1 11 5.6 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Polyketide_cyc2 PF10604.9 gi|433590373|ref|YP_007279869.1| - 0.081 13.2 4.5 0.25 11.6 4.5 1.9 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport MMR_HSR1_C PF08438.10 gi|433590375|ref|YP_007279871.1| - 1.1e-31 109.7 0.0 2.1e-31 108.8 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|433590375|ref|YP_007279871.1| - 2.2e-20 72.8 0.0 1.3e-18 67.2 0.0 2.9 2 1 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|433590375|ref|YP_007279871.1| - 1.1e-08 35.0 0.0 2.6e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|433590375|ref|YP_007279871.1| - 1.2e-06 28.2 0.0 0.00039 20.0 0.0 2.6 3 0 0 3 3 3 2 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|433590375|ref|YP_007279871.1| - 0.038 14.2 0.0 4 7.7 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF933) CPSase_L_D3 PF02787.19 gi|433590375|ref|YP_007279871.1| - 0.051 13.9 1.5 0.18 12.2 0.2 2.1 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Dynamin_N PF00350.23 gi|433590375|ref|YP_007279871.1| - 0.056 13.5 0.5 0.54 10.3 0.0 2.6 3 1 0 3 3 3 0 Dynamin family GTP_EFTU PF00009.27 gi|433590375|ref|YP_007279871.1| - 0.14 11.7 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Roc PF08477.13 gi|433590375|ref|YP_007279871.1| - 0.18 12.1 0.0 2.2 8.5 0.0 2.5 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase ArsA_ATPase PF02374.15 gi|433590376|ref|YP_007279872.1| - 2.6e-66 223.9 0.0 3.1e-66 223.6 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|433590376|ref|YP_007279872.1| - 1.1e-09 38.4 0.0 2.6e-09 37.2 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|433590376|ref|YP_007279872.1| - 1.6e-09 37.9 0.0 3.2e-09 36.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|433590376|ref|YP_007279872.1| - 0.00041 19.9 0.0 0.015 14.8 0.0 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|433590376|ref|YP_007279872.1| - 0.0015 18.1 0.0 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|433590376|ref|YP_007279872.1| - 0.0048 16.5 1.5 0.044 13.4 1.5 2.2 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|433590376|ref|YP_007279872.1| - 0.01 14.8 0.0 0.11 11.5 0.1 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_26 PF13500.6 gi|433590376|ref|YP_007279872.1| - 0.021 14.6 0.1 0.07 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|433590376|ref|YP_007279872.1| - 0.024 14.3 0.1 0.047 13.4 0.1 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein CBP_BcsQ PF06564.12 gi|433590376|ref|YP_007279872.1| - 0.059 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ PhoH PF02562.16 gi|433590376|ref|YP_007279872.1| - 0.12 11.9 0.0 0.2 11.1 0.0 1.5 1 1 0 1 1 1 0 PhoH-like protein AAA_24 PF13479.6 gi|433590376|ref|YP_007279872.1| - 0.12 12.1 0.0 0.32 10.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain Cytochrom_B559a PF00284.20 gi|433590377|ref|YP_007279873.1| - 0.017 14.9 0.1 0.036 13.8 0.1 1.5 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit cobW PF02492.19 gi|433590378|ref|YP_007279874.1| - 2.8e-49 167.1 0.1 3.5e-49 166.8 0.1 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|433590378|ref|YP_007279874.1| - 1.3e-26 92.4 0.0 2.6e-26 91.4 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|433590378|ref|YP_007279874.1| - 1e-05 25.5 0.4 0.016 15.1 0.0 2.7 3 0 0 3 3 3 2 RsgA GTPase GTP_EFTU PF00009.27 gi|433590378|ref|YP_007279874.1| - 0.00018 21.1 0.0 0.55 9.7 0.0 2.7 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|433590378|ref|YP_007279874.1| - 0.0025 18.2 1.0 0.0077 16.6 0.7 2.2 2 1 0 2 2 1 1 AAA ATPase domain T2SSE PF00437.20 gi|433590378|ref|YP_007279874.1| - 0.0029 16.7 0.0 0.0051 15.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein TsaE PF02367.17 gi|433590378|ref|YP_007279874.1| - 0.0041 17.1 0.1 0.013 15.5 0.0 1.8 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|433590378|ref|YP_007279874.1| - 0.015 14.6 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.9 gi|433590378|ref|YP_007279874.1| - 0.017 14.1 0.0 0.026 13.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 gi|433590378|ref|YP_007279874.1| - 0.02 15.0 0.0 0.036 14.1 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|433590378|ref|YP_007279874.1| - 0.034 14.2 0.2 3.4 7.8 0.1 2.6 2 1 1 3 3 3 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|433590378|ref|YP_007279874.1| - 0.07 12.8 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|433590378|ref|YP_007279874.1| - 0.074 13.3 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|433590378|ref|YP_007279874.1| - 0.084 13.0 0.0 0.21 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|433590378|ref|YP_007279874.1| - 0.13 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 gi|433590378|ref|YP_007279874.1| - 0.18 12.3 0.5 0.3 11.6 0.1 1.5 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.27 gi|433590378|ref|YP_007279874.1| - 0.19 12.2 0.0 0.35 11.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter zinc_ribbon_9 PF14369.6 gi|433590379|ref|YP_007279875.1| - 0.00072 19.8 1.5 0.0012 19.0 1.5 1.4 1 0 0 1 1 1 1 zinc-ribbon zinc-ribbons_6 PF07191.12 gi|433590379|ref|YP_007279875.1| - 0.0014 18.6 0.8 0.0016 18.3 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbons YdjO PF14169.6 gi|433590379|ref|YP_007279875.1| - 0.0054 16.4 0.4 0.0073 16.0 0.4 1.3 1 0 0 1 1 1 1 Cold-inducible protein YdjO Zn-ribbon_8 PF09723.10 gi|433590379|ref|YP_007279875.1| - 0.012 15.7 1.8 0.023 14.8 1.8 1.5 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|433590379|ref|YP_007279875.1| - 0.018 15.1 2.4 0.021 14.9 2.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|433590379|ref|YP_007279875.1| - 0.018 14.6 3.1 0.25 10.9 0.3 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|433590379|ref|YP_007279875.1| - 0.024 14.6 1.2 0.47 10.4 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TerY_C PF15616.6 gi|433590379|ref|YP_007279875.1| - 0.033 14.3 0.6 0.037 14.1 0.6 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain DUF4149 PF13664.6 gi|433590380|ref|YP_007279876.1| - 0.28 11.5 5.9 0.081 13.3 1.6 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) DUF4131 PF13567.6 gi|433590380|ref|YP_007279876.1| - 2.4 7.8 6.4 0.6 9.7 3.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF496 PF04363.12 gi|433590383|ref|YP_007279879.1| - 0.12 12.4 0.0 0.31 11.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF496) FAA_hydrolase PF01557.18 gi|433590383|ref|YP_007279879.1| - 0.15 11.7 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family CstA PF02554.14 gi|433590384|ref|YP_007279880.1| - 9e-105 350.6 20.1 9e-105 350.6 20.1 1.8 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|433590384|ref|YP_007279880.1| - 1.8e-30 105.7 3.7 1.8e-30 105.7 3.7 4.2 4 0 0 4 4 4 1 5TM C-terminal transporter carbon starvation CstA FAM70 PF14967.6 gi|433590384|ref|YP_007279880.1| - 0.11 11.9 3.6 0.22 10.9 3.6 1.4 1 0 0 1 1 1 0 FAM70 protein Aminotran_5 PF00266.19 gi|433590385|ref|YP_007279881.1| - 9e-26 90.7 0.0 1.2e-25 90.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V RcpC PF16976.5 gi|433590385|ref|YP_007279881.1| - 0.099 12.7 0.1 16 5.6 0.1 2.4 2 0 0 2 2 2 0 Flp pilus assembly protein RcpC/CpaB Methyltransf_11 PF08241.12 gi|433590386|ref|YP_007279882.1| - 2.5e-17 63.3 0.0 3.8e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433590386|ref|YP_007279882.1| - 9.3e-16 58.1 0.0 1.1e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433590386|ref|YP_007279882.1| - 4e-15 56.3 0.0 6e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433590386|ref|YP_007279882.1| - 1e-12 48.6 0.0 1.7e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433590386|ref|YP_007279882.1| - 3.6e-11 43.1 0.0 4.4e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433590386|ref|YP_007279882.1| - 1.5e-06 27.7 0.0 2.1e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|433590386|ref|YP_007279882.1| - 0.0022 17.6 0.0 0.0048 16.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|433590386|ref|YP_007279882.1| - 0.012 15.2 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MmoB_DmpM PF02406.17 gi|433590386|ref|YP_007279882.1| - 0.013 15.7 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 MmoB/DmpM family Carb_kinase PF01256.17 gi|433590387|ref|YP_007279883.1| - 4.9e-35 121.1 0.5 6.2e-35 120.8 0.5 1.1 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|433590387|ref|YP_007279883.1| - 0.00062 19.2 1.2 0.014 14.8 0.2 2.0 2 0 0 2 2 2 2 Hydroxyethylthiazole kinase family Pribosyltran PF00156.27 gi|433590388|ref|YP_007279884.1| - 1.8e-24 86.0 0.1 2.3e-24 85.7 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|433590388|ref|YP_007279884.1| - 0.0047 16.4 0.0 0.0076 15.7 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|433590388|ref|YP_007279884.1| - 0.087 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase PALP PF00291.25 gi|433590388|ref|YP_007279884.1| - 0.12 11.7 0.9 0.22 10.9 0.9 1.6 1 1 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme ELFV_dehydrog PF00208.21 gi|433590389|ref|YP_007279885.1| - 3.8e-72 242.9 0.0 4.8e-72 242.6 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|433590389|ref|YP_007279885.1| - 1.4e-56 189.9 0.0 2.9e-56 188.9 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|433590389|ref|YP_007279885.1| - 0.0015 17.9 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|433590389|ref|YP_007279885.1| - 0.081 12.3 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 ThiF family Mycobact_memb PF05423.13 gi|433590389|ref|YP_007279885.1| - 0.15 12.0 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Mycobacterium membrane protein DZR PF12773.7 gi|433590390|ref|YP_007279886.1| - 1.2e-05 25.2 1.1 1.4e-05 25.0 1.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|433590390|ref|YP_007279886.1| - 0.0004 20.0 1.3 0.15 11.8 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF1272 PF06906.11 gi|433590390|ref|YP_007279886.1| - 0.00055 20.0 1.0 0.00057 19.9 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Ogr_Delta PF04606.12 gi|433590390|ref|YP_007279886.1| - 0.0015 18.4 3.8 0.028 14.4 1.4 2.1 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger Zn-ribbon_8 PF09723.10 gi|433590390|ref|YP_007279886.1| - 0.002 18.2 5.0 0.0042 17.2 5.0 1.5 1 1 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|433590390|ref|YP_007279886.1| - 0.0031 17.0 0.9 1 8.9 0.1 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding zf-C4_Topoisom PF01396.19 gi|433590390|ref|YP_007279886.1| - 0.004 16.9 0.9 0.0093 15.7 0.1 1.8 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HypA PF01155.19 gi|433590390|ref|YP_007279886.1| - 0.004 17.1 1.0 0.004 17.1 1.0 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_9 PF14369.6 gi|433590390|ref|YP_007279886.1| - 0.0078 16.4 0.7 0.012 15.9 0.7 1.4 1 0 0 1 1 1 1 zinc-ribbon zf-ribbon_3 PF13248.6 gi|433590390|ref|YP_007279886.1| - 0.011 15.1 2.7 0.082 12.3 2.7 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|433590390|ref|YP_007279886.1| - 0.011 15.7 0.9 0.013 15.4 0.9 1.1 1 0 0 1 1 1 0 zinc-ribbons zf_UBZ PF18439.1 gi|433590390|ref|YP_007279886.1| - 0.012 15.2 0.9 4 7.1 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2HC5 PF06221.13 gi|433590390|ref|YP_007279886.1| - 0.017 15.1 0.1 0.018 15.0 0.1 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Nudix_N_2 PF14803.6 gi|433590390|ref|YP_007279886.1| - 0.018 15.0 1.4 1.6 8.8 0.2 2.1 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|433590390|ref|YP_007279886.1| - 0.046 13.6 1.9 3.7 7.5 0.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|433590390|ref|YP_007279886.1| - 0.05 13.8 0.5 0.06 13.5 0.5 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-tcix PF14952.6 gi|433590390|ref|YP_007279886.1| - 0.053 13.1 1.0 1.1 9.0 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding MCM_OB PF17207.3 gi|433590390|ref|YP_007279886.1| - 0.066 13.1 0.5 0.068 13.0 0.5 1.0 1 0 0 1 1 1 0 MCM OB domain DNA_RNApol_7kD PF03604.13 gi|433590390|ref|YP_007279886.1| - 0.066 12.9 1.8 0.18 11.5 1.8 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-Mss51 PF13824.6 gi|433590390|ref|YP_007279886.1| - 0.068 13.3 3.5 0.32 11.1 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 YhfH PF14149.6 gi|433590390|ref|YP_007279886.1| - 0.074 13.0 3.5 0.75 9.8 0.2 2.2 1 1 1 2 2 2 0 YhfH-like protein HalOD2 PF18547.1 gi|433590390|ref|YP_007279886.1| - 0.14 12.0 3.4 0.84 9.6 0.2 2.1 1 1 1 2 2 2 0 Halobacterial output domain 2 zf-C2H2_11 PF16622.5 gi|433590390|ref|YP_007279886.1| - 0.37 10.6 1.4 1.8 8.4 0.1 2.1 2 0 0 2 2 2 0 zinc-finger C2H2-type UPF0547 PF10571.9 gi|433590390|ref|YP_007279886.1| - 1.9 8.6 8.5 14 5.8 0.6 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 BAT PF15915.5 gi|433590391|ref|YP_007279887.1| - 4.1e-36 124.2 18.1 4.1e-36 124.2 18.1 5.6 6 2 1 7 7 7 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|433590391|ref|YP_007279887.1| - 3.8e-27 95.3 14.2 1.1e-15 58.1 1.3 3.8 4 0 0 4 4 4 2 GAF domain HTH_10 PF04967.12 gi|433590391|ref|YP_007279887.1| - 1.2e-16 60.3 0.0 2.4e-16 59.3 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.6 gi|433590391|ref|YP_007279887.1| - 3.3e-16 59.8 0.3 1.2e-08 35.3 0.0 2.8 2 0 0 2 2 2 2 GAF domain PAS_4 PF08448.10 gi|433590391|ref|YP_007279887.1| - 1.5e-12 47.7 14.3 7.6e-10 39.0 3.0 5.4 5 2 0 5 5 5 2 PAS fold Response_reg PF00072.24 gi|433590391|ref|YP_007279887.1| - 5.1e-09 36.3 0.0 1.4e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|433590391|ref|YP_007279887.1| - 3.6e-08 33.6 0.0 2.7e-06 27.6 0.0 3.0 3 0 0 3 3 3 1 PAS domain GAF PF01590.26 gi|433590391|ref|YP_007279887.1| - 2.5e-07 31.4 0.2 0.028 15.0 0.0 2.7 2 0 0 2 2 2 2 GAF domain PAS PF00989.25 gi|433590391|ref|YP_007279887.1| - 6.7e-05 22.9 0.0 0.4 10.7 0.0 2.8 2 0 0 2 2 2 2 PAS fold SelR PF01641.18 gi|433590393|ref|YP_007279889.1| - 4.8e-55 184.8 0.1 5.5e-55 184.6 0.1 1.0 1 0 0 1 1 1 1 SelR domain zinc_ribbon_10 PF10058.9 gi|433590393|ref|YP_007279889.1| - 0.0041 16.8 0.3 0.94 9.3 0.0 2.3 2 0 0 2 2 2 2 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|433590393|ref|YP_007279889.1| - 0.0072 15.8 2.6 1.4 8.5 0.4 2.8 2 0 0 2 2 2 2 TFIIB zinc-binding Yippee-Mis18 PF03226.14 gi|433590393|ref|YP_007279889.1| - 0.011 15.9 0.1 0.025 14.8 0.1 1.6 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DZR PF12773.7 gi|433590393|ref|YP_007279889.1| - 0.04 13.9 1.1 1.8 8.6 0.0 2.4 2 1 0 2 2 2 0 Double zinc ribbon NinF PF05810.12 gi|433590393|ref|YP_007279889.1| - 0.1 12.5 0.1 7.5 6.5 0.0 2.2 2 0 0 2 2 2 0 NinF protein zf-ribbon_3 PF13248.6 gi|433590393|ref|YP_007279889.1| - 0.16 11.4 2.8 2 8.0 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain HECT_2 PF09814.9 gi|433590393|ref|YP_007279889.1| - 0.21 10.4 0.2 1.7 7.4 0.2 1.9 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Ribosomal_L37e PF01907.19 gi|433590393|ref|YP_007279889.1| - 1.5 9.1 4.1 5.6 7.2 0.3 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e Rubredoxin_2 PF18073.1 gi|433590394|ref|YP_007279890.1| - 0.0072 16.0 3.1 0.19 11.5 0.3 2.2 2 0 0 2 2 2 1 Rubredoxin metal binding domain HypA PF01155.19 gi|433590394|ref|YP_007279890.1| - 0.0083 16.1 0.3 0.009 16.0 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-IS66 PF13005.7 gi|433590394|ref|YP_007279890.1| - 0.025 15.0 1.1 5.5 7.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.10 gi|433590394|ref|YP_007279890.1| - 0.027 14.2 0.5 5.3 6.9 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|433590394|ref|YP_007279890.1| - 0.031 13.8 3.0 0.5 9.9 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|433590394|ref|YP_007279890.1| - 0.043 14.0 3.9 0.098 12.8 3.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|433590394|ref|YP_007279890.1| - 0.052 13.4 0.7 0.87 9.5 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1 PF03811.13 gi|433590394|ref|YP_007279890.1| - 0.056 13.2 5.1 0.22 11.3 0.2 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.7 gi|433590394|ref|YP_007279890.1| - 0.067 13.2 1.9 6.7 6.8 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|433590394|ref|YP_007279890.1| - 0.087 12.7 1.4 3.7 7.5 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_4 PF13717.6 gi|433590394|ref|YP_007279890.1| - 0.16 11.9 3.2 2.9 7.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|433590394|ref|YP_007279890.1| - 0.41 10.4 4.0 0.79 9.5 0.8 2.1 2 0 0 2 2 2 0 zinc-ribbon domain BAT PF15915.5 gi|433590395|ref|YP_007279891.1| - 5.6e-35 120.5 8.7 5.6e-35 120.5 8.7 2.5 3 0 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|433590395|ref|YP_007279891.1| - 3.6e-21 74.7 0.0 7.8e-21 73.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|433590395|ref|YP_007279891.1| - 1.6e-11 44.7 3.0 1.9e-11 44.4 0.7 2.2 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.10 gi|433590395|ref|YP_007279891.1| - 6.9e-08 32.7 3.2 6.6e-07 29.6 0.2 3.4 3 0 0 3 3 3 1 PAS fold GAF_3 PF13492.6 gi|433590395|ref|YP_007279891.1| - 1.3e-05 25.6 0.0 4.4e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|433590395|ref|YP_007279891.1| - 0.0015 19.2 0.2 0.0059 17.2 0.0 2.0 2 0 0 2 2 2 1 GAF domain Sigma70_r4 PF04545.16 gi|433590395|ref|YP_007279891.1| - 0.0035 16.8 0.0 0.015 14.8 0.0 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|433590395|ref|YP_007279891.1| - 0.0056 16.6 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain UPF0122 PF04297.14 gi|433590395|ref|YP_007279891.1| - 0.024 14.9 0.3 0.083 13.1 0.0 1.9 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like PAS PF00989.25 gi|433590395|ref|YP_007279891.1| - 0.054 13.5 0.4 0.21 11.6 0.0 2.2 3 0 0 3 3 3 0 PAS fold HTH_24 PF13412.6 gi|433590395|ref|YP_007279891.1| - 0.098 12.2 0.0 0.49 10.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF134 PF02001.16 gi|433590395|ref|YP_007279891.1| - 0.13 12.9 0.0 0.34 11.5 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF134 GerE PF00196.19 gi|433590395|ref|YP_007279891.1| - 0.13 11.8 0.1 3 7.5 0.0 3.0 4 0 0 4 4 4 0 Bacterial regulatory proteins, luxR family SQS_PSY PF00494.19 gi|433590396|ref|YP_007279892.1| - 1.1e-64 218.5 7.7 1.3e-64 218.2 7.7 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase LTXXQ PF07813.12 gi|433590396|ref|YP_007279892.1| - 0.048 14.4 0.9 2.1 9.1 0.1 2.3 2 0 0 2 2 2 0 LTXXQ motif family protein Endotoxin_N PF03945.14 gi|433590396|ref|YP_007279892.1| - 0.2 11.4 0.0 5 6.8 0.0 2.2 2 0 0 2 2 2 0 delta endotoxin, N-terminal domain DUF1184 PF06683.11 gi|433590397|ref|YP_007279893.1| - 0.048 13.2 0.0 0.048 13.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1184) zf-Di19 PF05605.12 gi|433590398|ref|YP_007279894.1| - 0.012 15.8 0.2 0.016 15.5 0.2 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Caroten_synth PF04240.12 gi|433590399|ref|YP_007279895.1| - 1e-64 218.2 16.0 1.4e-64 217.8 16.0 1.2 1 0 0 1 1 1 1 Carotenoid biosynthesis protein VMA21 PF09446.10 gi|433590399|ref|YP_007279895.1| - 1.7 8.8 6.3 13 6.0 0.5 3.3 3 0 0 3 3 3 0 VMA21-like domain UbiA PF01040.18 gi|433590400|ref|YP_007279896.1| - 1.7e-27 96.3 23.1 2.4e-27 95.9 23.1 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Amino_oxidase PF01593.24 gi|433590401|ref|YP_007279897.1| - 1e-34 120.6 0.0 1.2e-34 120.4 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|433590401|ref|YP_007279897.1| - 2e-16 60.0 0.0 5.7e-16 58.5 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|433590401|ref|YP_007279897.1| - 1.8e-10 40.9 8.1 6.4e-09 35.8 8.1 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|433590401|ref|YP_007279897.1| - 8.4e-07 28.5 0.1 1.9e-05 24.1 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|433590401|ref|YP_007279897.1| - 1.7e-06 27.4 1.1 2.8e-06 26.7 1.1 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|433590401|ref|YP_007279897.1| - 6.8e-06 26.5 1.5 0.00019 21.9 0.2 3.1 3 1 1 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|433590401|ref|YP_007279897.1| - 2e-05 24.2 0.0 4.8e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|433590401|ref|YP_007279897.1| - 0.00011 21.6 0.2 0.00018 20.9 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|433590401|ref|YP_007279897.1| - 0.0015 17.3 0.6 0.003 16.3 0.4 1.6 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|433590401|ref|YP_007279897.1| - 0.0032 16.8 0.3 0.0052 16.1 0.3 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|433590401|ref|YP_007279897.1| - 0.0052 16.1 0.1 0.073 12.3 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase MCRA PF06100.11 gi|433590401|ref|YP_007279897.1| - 0.023 13.5 0.0 0.03 13.1 0.0 1.1 1 0 0 1 1 1 0 MCRA family AlaDh_PNT_C PF01262.21 gi|433590401|ref|YP_007279897.1| - 0.029 13.7 0.1 0.045 13.0 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|433590401|ref|YP_007279897.1| - 0.041 14.3 0.0 0.069 13.6 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding GIDA PF01134.22 gi|433590401|ref|YP_007279897.1| - 0.05 12.7 0.4 0.075 12.1 0.4 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A IlvN PF07991.12 gi|433590401|ref|YP_007279897.1| - 0.062 12.9 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|433590401|ref|YP_007279897.1| - 0.085 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|433590401|ref|YP_007279897.1| - 0.093 12.6 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.25 gi|433590402|ref|YP_007279898.1| - 3.3e-26 92.0 0.0 3.8e-26 91.8 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|433590402|ref|YP_007279898.1| - 8.2e-26 91.0 0.2 1e-25 90.7 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|433590402|ref|YP_007279898.1| - 2.2e-09 37.5 0.2 3.5e-09 36.8 0.2 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433590402|ref|YP_007279898.1| - 6.3e-07 29.1 0.1 0.0006 19.3 0.3 2.1 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|433590402|ref|YP_007279898.1| - 0.062 12.7 0.6 0.11 11.9 0.1 1.6 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase zf-ribbon_3 PF13248.6 gi|433590403|ref|YP_007279899.1| - 0.032 13.6 0.8 0.049 13.1 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|433590403|ref|YP_007279899.1| - 0.036 14.4 0.3 0.049 14.0 0.3 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|433590403|ref|YP_007279899.1| - 0.038 14.0 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain CpXC PF14353.6 gi|433590403|ref|YP_007279899.1| - 0.043 13.9 0.1 0.05 13.6 0.1 1.2 1 0 0 1 1 1 0 CpXC protein Cys_rich_CPXG PF14255.6 gi|433590403|ref|YP_007279899.1| - 0.043 13.7 0.4 0.043 13.7 0.4 1.9 2 1 0 2 2 2 0 Cysteine-rich CPXCG Zn-ribbon_8 PF09723.10 gi|433590403|ref|YP_007279899.1| - 0.053 13.6 0.2 0.19 11.9 0.1 1.8 2 0 0 2 2 2 0 Zinc ribbon domain T4_baseplate PF12322.8 gi|433590403|ref|YP_007279899.1| - 0.11 11.9 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 T4 bacteriophage base plate protein eIF-1a PF01176.19 gi|433590404|ref|YP_007279900.1| - 2.6e-19 68.8 0.1 3e-19 68.6 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 FAA_hydrolase PF01557.18 gi|433590406|ref|YP_007279902.1| - 2e-46 158.4 0.0 2.4e-46 158.1 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|433590406|ref|YP_007279902.1| - 0.016 16.1 0.2 0.11 13.4 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF2437) DUF2171 PF09939.9 gi|433590407|ref|YP_007279903.1| - 0.015 15.5 2.5 0.051 13.9 2.5 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) PRC PF05239.16 gi|433590407|ref|YP_007279903.1| - 0.072 13.2 1.1 0.11 12.7 1.1 1.5 1 1 0 1 1 1 0 PRC-barrel domain DDE_Tnp_1 PF01609.21 gi|433590409|ref|YP_007279905.1| - 2.6e-17 63.2 0.0 4.1e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433590409|ref|YP_007279905.1| - 9.2e-05 22.4 0.0 0.00018 21.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) TipAS PF07739.13 gi|433590410|ref|YP_007279906.1| - 0.015 15.8 0.1 0.022 15.3 0.1 1.2 1 0 0 1 1 1 0 TipAS antibiotic-recognition domain CbiZ PF01955.18 gi|433590412|ref|YP_007279908.1| - 3.4e-42 144.7 1.2 5e-42 144.2 1.2 1.3 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Aminotran_1_2 PF00155.21 gi|433590413|ref|YP_007279909.1| - 1.5e-36 126.3 0.0 1.7e-36 126.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|433590413|ref|YP_007279909.1| - 0.031 12.8 0.0 0.045 12.3 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|433590413|ref|YP_007279909.1| - 0.12 11.6 0.0 1.1 8.4 0.0 2.2 1 1 0 1 1 1 0 Beta-eliminating lyase NTP_transf_3 PF12804.7 gi|433590415|ref|YP_007279911.1| - 2.1e-17 63.9 0.2 2.7e-17 63.6 0.2 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|433590415|ref|YP_007279911.1| - 0.0016 18.1 0.0 0.002 17.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|433590415|ref|YP_007279911.1| - 0.0021 17.8 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|433590415|ref|YP_007279911.1| - 0.0087 16.0 0.0 0.025 14.5 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase CobS PF02654.15 gi|433590416|ref|YP_007279912.1| - 1.1e-36 126.9 21.6 1.3e-36 126.7 21.6 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.13 gi|433590417|ref|YP_007279913.1| - 9.2e-80 267.8 7.9 9.2e-80 267.8 7.9 1.4 1 1 1 2 2 2 1 CobD/Cbib protein Hydrolase PF00702.26 gi|433590418|ref|YP_007279914.1| - 1.6e-08 35.1 0.1 4.4e-08 33.7 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|433590418|ref|YP_007279914.1| - 4e-05 23.8 0.0 8.2e-05 22.8 0.0 1.5 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433590418|ref|YP_007279914.1| - 0.00047 20.2 0.1 0.0012 18.8 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|433590418|ref|YP_007279914.1| - 0.011 16.2 0.1 0.013 15.9 0.1 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase HTH_Crp_2 PF13545.6 gi|433590419|ref|YP_007279915.1| - 4.7e-05 23.3 0.0 7.7e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|433590419|ref|YP_007279915.1| - 7.7e-05 22.5 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|433590419|ref|YP_007279915.1| - 0.0036 17.4 0.0 0.017 15.3 0.0 2.0 2 0 0 2 2 2 1 DprA winged helix domain MarR_2 PF12802.7 gi|433590419|ref|YP_007279915.1| - 0.0039 17.0 0.0 0.01 15.7 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|433590419|ref|YP_007279915.1| - 0.037 13.6 0.0 0.074 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|433590419|ref|YP_007279915.1| - 0.045 13.6 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain eIF-5_eIF-2B PF01873.17 gi|433590420|ref|YP_007279916.1| - 2.2e-33 114.6 0.0 3.5e-33 113.9 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|433590420|ref|YP_007279916.1| - 1.6e-08 34.4 0.8 3e-08 33.5 0.8 1.5 1 0 0 1 1 1 1 TRAM domain Lar_restr_allev PF14354.6 gi|433590420|ref|YP_007279916.1| - 0.049 14.0 0.5 0.55 10.7 0.4 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar CBM_4_9 PF02018.17 gi|433590420|ref|YP_007279916.1| - 0.056 13.7 0.1 0.11 12.8 0.1 1.5 1 0 0 1 1 1 0 Carbohydrate binding domain MRP PF09387.10 gi|433590420|ref|YP_007279916.1| - 0.065 13.2 0.0 0.091 12.7 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial RNA binding protein MRP Zn-ribbon_8 PF09723.10 gi|433590420|ref|YP_007279916.1| - 0.13 12.3 0.7 0.33 11.1 0.7 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|433590420|ref|YP_007279916.1| - 0.14 11.6 0.3 4.3 6.9 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|433590420|ref|YP_007279916.1| - 0.28 11.1 4.3 0.11 12.4 1.6 1.8 2 0 0 2 2 2 0 Nudix N-terminal YyzF PF14116.6 gi|433590420|ref|YP_007279916.1| - 0.85 9.7 4.0 0.51 10.4 1.5 2.0 2 1 0 2 2 2 0 YyzF-like protein DUF2795 PF11387.8 gi|433590421|ref|YP_007279917.1| - 0.085 13.1 1.0 5 7.4 0.0 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2795) Aminotran_3 PF00202.21 gi|433590422|ref|YP_007279918.1| - 2.5e-117 392.0 0.0 3e-117 391.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|433590422|ref|YP_007279918.1| - 7.6e-06 25.3 0.0 1.5e-05 24.4 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II AsnC_trans_reg PF01037.21 gi|433590423|ref|YP_007279919.1| - 4.5e-09 36.1 1.3 7.4e-09 35.5 1.3 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_IclR PF09339.10 gi|433590423|ref|YP_007279919.1| - 5.3e-08 32.5 0.0 9.7e-08 31.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|433590423|ref|YP_007279919.1| - 2.1e-06 27.5 0.0 4.3e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|433590423|ref|YP_007279919.1| - 7.2e-06 25.5 0.0 1.6e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|433590423|ref|YP_007279919.1| - 3.4e-05 23.6 0.0 0.00012 21.9 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|433590423|ref|YP_007279919.1| - 0.00026 20.8 0.0 0.001 18.9 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|433590423|ref|YP_007279919.1| - 0.00028 20.9 0.0 0.00075 19.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|433590423|ref|YP_007279919.1| - 0.00052 20.5 0.0 0.0018 18.7 0.0 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain GYD PF08734.11 gi|433590423|ref|YP_007279919.1| - 0.0095 15.9 0.2 0.02 14.8 0.2 1.6 1 1 0 1 1 1 1 GYD domain Sigma70_r4_2 PF08281.12 gi|433590423|ref|YP_007279919.1| - 0.025 14.2 0.0 0.054 13.2 0.0 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 DUF2250 PF10007.9 gi|433590423|ref|YP_007279919.1| - 0.033 14.3 0.0 0.068 13.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.19 gi|433590423|ref|YP_007279919.1| - 0.041 14.1 0.1 0.14 12.4 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Vps54_N PF10475.9 gi|433590423|ref|YP_007279919.1| - 0.061 12.6 0.1 4.6 6.4 0.1 2.0 1 1 1 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex RbsD_FucU PF05025.13 gi|433590423|ref|YP_007279919.1| - 0.083 13.3 1.5 0.52 10.7 0.2 2.3 1 1 1 2 2 2 0 RbsD / FucU transport protein family HTH_DeoR PF08220.12 gi|433590423|ref|YP_007279919.1| - 0.092 12.5 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|433590423|ref|YP_007279919.1| - 0.094 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF3192 PF11399.8 gi|433590423|ref|YP_007279919.1| - 0.11 12.5 0.1 4.5 7.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3192) HTH_23 PF13384.6 gi|433590423|ref|YP_007279919.1| - 0.16 11.8 0.0 0.41 10.5 0.0 1.6 2 0 0 2 2 1 0 Homeodomain-like domain MarR PF01047.22 gi|433590423|ref|YP_007279919.1| - 0.17 11.8 0.0 2.9 7.9 0.0 2.5 3 0 0 3 3 3 0 MarR family Myb_DNA-binding PF00249.31 gi|433590423|ref|YP_007279919.1| - 0.22 11.8 0.0 0.52 10.5 0.0 1.6 1 0 0 1 1 1 0 Myb-like DNA-binding domain AA_permease_2 PF13520.6 gi|433590424|ref|YP_007279920.1| - 1.2e-38 133.0 43.6 1.5e-38 132.7 43.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|433590424|ref|YP_007279920.1| - 1.1e-29 103.4 40.8 1.5e-29 103.0 40.8 1.2 1 0 0 1 1 1 1 Amino acid permease PGF-CTERM PF18204.1 gi|433590425|ref|YP_007279921.1| - 7.3e-05 22.6 3.0 7.3e-05 22.6 3.0 1.8 2 0 0 2 2 2 1 PGF-CTERM motif zinc_ribbon_6 PF14599.6 gi|433590426|ref|YP_007279922.1| - 0.058 13.4 0.1 0.084 12.9 0.1 1.3 1 0 0 1 1 1 0 Zinc-ribbon Bactofilin PF04519.13 gi|433590428|ref|YP_007279924.1| - 0.019 15.3 0.3 0.027 14.8 0.3 1.3 1 0 0 1 1 1 0 Polymer-forming cytoskeletal DUF5634_N PF18672.1 gi|433590428|ref|YP_007279924.1| - 0.029 14.1 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5634) Mrr_N PF14338.6 gi|433590429|ref|YP_007279925.1| - 0.063 13.4 0.0 0.11 12.6 0.0 1.5 1 1 0 1 1 1 0 Mrr N-terminal domain DEAD PF00270.29 gi|433590430|ref|YP_007279926.1| - 1.4e-20 73.8 0.0 2.1e-20 73.2 0.0 1.2 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|433590430|ref|YP_007279926.1| - 1.5e-16 60.9 0.2 5.7e-16 59.1 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|433590430|ref|YP_007279926.1| - 1.8e-10 41.1 0.0 2.8e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|433590430|ref|YP_007279926.1| - 6.1e-10 39.4 0.0 2.9e-09 37.2 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|433590430|ref|YP_007279926.1| - 0.0016 17.3 0.0 0.0022 16.8 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain RNase_H_2 PF13482.6 gi|433590431|ref|YP_007279927.1| - 2.4e-26 92.7 0.0 3.3e-26 92.2 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.6 gi|433590431|ref|YP_007279927.1| - 6.9e-13 49.0 0.9 1.7e-12 47.7 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|433590431|ref|YP_007279927.1| - 5e-09 35.6 0.6 0.00022 20.9 0.1 3.1 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|433590431|ref|YP_007279927.1| - 3.5e-05 23.8 0.2 0.00011 22.2 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|433590431|ref|YP_007279927.1| - 0.00066 19.9 0.1 0.014 15.7 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|433590431|ref|YP_007279927.1| - 0.00084 19.1 0.0 0.6 10.0 0.0 2.6 1 1 1 2 2 2 2 Fingers domain of DNA polymerase lambda HHH_8 PF14716.6 gi|433590431|ref|YP_007279927.1| - 0.0033 17.7 0.0 0.47 10.8 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_B_exo2 PF10108.9 gi|433590431|ref|YP_007279927.1| - 0.012 15.2 0.1 0.057 13.1 0.0 1.8 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Rnk_N PF14760.6 gi|433590431|ref|YP_007279927.1| - 0.18 12.3 1.2 65 4.1 0.0 3.6 3 0 0 3 3 3 0 Rnk N-terminus Thioredoxin PF00085.20 gi|433590432|ref|YP_007279928.1| - 1.7e-12 47.2 0.0 2e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|433590432|ref|YP_007279928.1| - 1.4e-06 28.3 0.0 2.4e-06 27.5 0.0 1.3 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|433590432|ref|YP_007279928.1| - 0.00026 21.4 0.0 0.0085 16.5 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|433590432|ref|YP_007279928.1| - 0.0015 18.5 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.14 gi|433590432|ref|YP_007279928.1| - 0.11 13.0 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) OST3_OST6 PF04756.13 gi|433590432|ref|YP_007279928.1| - 0.11 11.9 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family HyaE PF07449.11 gi|433590432|ref|YP_007279928.1| - 0.13 12.3 0.0 0.32 11.0 0.0 1.7 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE Phosducin PF02114.16 gi|433590432|ref|YP_007279928.1| - 0.2 10.6 0.0 0.22 10.4 0.0 1.1 1 0 0 1 1 1 0 Phosducin zf-ribbon_3 PF13248.6 gi|433590433|ref|YP_007279929.1| - 0.018 14.4 0.3 1.8 8.1 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1272 PF06906.11 gi|433590433|ref|YP_007279929.1| - 0.15 12.1 4.8 0.69 10.0 4.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-B_box PF00643.24 gi|433590433|ref|YP_007279929.1| - 0.16 12.2 3.1 9.8 6.4 0.1 2.2 2 0 0 2 2 2 0 B-box zinc finger zf-MIZ PF02891.20 gi|433590433|ref|YP_007279929.1| - 0.17 11.7 3.6 0.26 11.0 3.6 1.3 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger Gln-synt_C PF00120.24 gi|433590434|ref|YP_007279930.1| - 3.6e-137 457.0 0.0 4.4e-137 456.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|433590434|ref|YP_007279930.1| - 1.2e-31 108.2 0.8 4.7e-31 106.4 0.0 2.1 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|433590434|ref|YP_007279930.1| - 0.09 12.6 0.0 0.65 9.9 0.0 2.2 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain TrmB PF01978.19 gi|433590435|ref|YP_007279931.1| - 3.3e-05 23.7 0.5 4.3e-05 23.3 0.5 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|433590435|ref|YP_007279931.1| - 0.025 14.5 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|433590435|ref|YP_007279931.1| - 0.039 14.4 0.1 0.053 14.0 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Metallophos_2 PF12850.7 gi|433590438|ref|YP_007279934.1| - 6.8e-09 36.1 0.1 9.4e-09 35.7 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|433590438|ref|YP_007279934.1| - 4.8e-06 27.2 0.1 2.1e-05 25.1 0.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Rrp44_CSD1 PF17216.3 gi|433590439|ref|YP_007279935.1| - 0.05 13.3 0.8 3.1 7.5 0.0 2.7 2 0 0 2 2 2 0 Rrp44-like cold shock domain tRNA_anti-codon PF01336.25 gi|433590440|ref|YP_007279936.1| - 6.7e-05 22.8 4.7 0.25 11.4 0.1 4.1 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain PhoU PF01895.19 gi|433590441|ref|YP_007279937.1| - 2e-19 69.8 9.6 2.9e-16 59.7 1.8 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|433590441|ref|YP_007279937.1| - 1.9e-10 40.4 0.0 7.3e-10 38.6 0.0 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin NIR_SIR_ferr PF03460.17 gi|433590441|ref|YP_007279937.1| - 0.088 12.7 0.4 0.3 11.0 0.1 2.0 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain PBP_like_2 PF12849.7 gi|433590442|ref|YP_007279938.1| - 1.3e-26 93.9 0.1 2.1e-26 93.3 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|433590442|ref|YP_007279938.1| - 2.4e-19 69.2 0.0 3.4e-19 68.7 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|433590442|ref|YP_007279938.1| - 0.089 12.7 2.1 0.17 11.8 2.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|433590443|ref|YP_007279939.1| - 1.1e-16 61.1 15.9 1.1e-16 61.1 15.9 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|433590444|ref|YP_007279940.1| - 1.8e-17 63.7 16.6 1.8e-17 63.7 16.6 4.5 2 2 2 4 4 4 1 Binding-protein-dependent transport system inner membrane component DUF5009 PF16401.5 gi|433590444|ref|YP_007279940.1| - 0.015 14.8 0.1 0.037 13.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5009) SLATT_1 PF18181.1 gi|433590444|ref|YP_007279940.1| - 1.3 9.0 15.0 0.081 12.9 0.6 4.0 3 1 0 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 1 ABC_tran PF00005.27 gi|433590445|ref|YP_007279941.1| - 1.3e-28 100.2 0.0 2e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433590445|ref|YP_007279941.1| - 2.4e-11 44.0 0.1 0.00013 21.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|433590445|ref|YP_007279941.1| - 4.5e-08 32.8 0.6 1.1e-06 28.3 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|433590445|ref|YP_007279941.1| - 8.8e-06 26.0 0.0 2.3e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|433590445|ref|YP_007279941.1| - 9e-06 25.6 0.0 0.00046 20.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|433590445|ref|YP_007279941.1| - 6.9e-05 22.5 0.0 0.00018 21.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|433590445|ref|YP_007279941.1| - 0.00045 20.8 0.0 0.001 19.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|433590445|ref|YP_007279941.1| - 0.002 18.1 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|433590445|ref|YP_007279941.1| - 0.003 17.2 0.2 0.032 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433590445|ref|YP_007279941.1| - 0.0041 17.5 1.4 0.036 14.4 1.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|433590445|ref|YP_007279941.1| - 0.0078 15.9 0.4 0.4 10.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain DeoRC PF00455.22 gi|433590445|ref|YP_007279941.1| - 0.02 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_33 PF13671.6 gi|433590445|ref|YP_007279941.1| - 0.034 14.3 0.0 0.079 13.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|433590445|ref|YP_007279941.1| - 0.035 13.8 0.0 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|433590445|ref|YP_007279941.1| - 0.056 13.4 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|433590445|ref|YP_007279941.1| - 0.064 13.0 0.0 0.22 11.2 0.0 2.0 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|433590445|ref|YP_007279941.1| - 0.088 13.4 0.0 0.21 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain KdpD PF02702.17 gi|433590445|ref|YP_007279941.1| - 0.089 12.2 0.3 0.15 11.6 0.3 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain ABC_ATPase PF09818.9 gi|433590445|ref|YP_007279941.1| - 0.1 11.4 0.0 4.9 5.8 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.12 gi|433590445|ref|YP_007279941.1| - 0.11 12.5 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|433590445|ref|YP_007279941.1| - 0.12 12.8 0.1 2.3 8.6 0.0 2.6 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|433590445|ref|YP_007279941.1| - 0.14 12.5 0.0 0.37 11.2 0.0 1.7 2 0 0 2 2 1 0 RNA helicase G-alpha PF00503.20 gi|433590445|ref|YP_007279941.1| - 0.21 10.7 0.0 0.37 9.9 0.0 1.6 1 1 0 1 1 1 0 G-protein alpha subunit PhoU PF01895.19 gi|433590446|ref|YP_007279942.1| - 7e-39 132.2 3.1 2.2e-23 82.5 0.2 2.5 2 1 0 2 2 2 2 PhoU domain GHMP_kinases_C PF08544.13 gi|433590446|ref|YP_007279942.1| - 0.016 15.5 0.1 0.088 13.2 0.0 2.3 2 1 0 2 2 2 0 GHMP kinases C terminal HTH_10 PF04967.12 gi|433590447|ref|YP_007279943.1| - 0.16 11.8 0.0 0.19 11.5 0.0 1.1 1 0 0 1 1 1 0 HTH DNA binding domain PBP_like PF12727.7 gi|433590448|ref|YP_007279944.1| - 6e-25 87.5 0.0 1e-24 86.8 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain PBP_like_2 PF12849.7 gi|433590448|ref|YP_007279944.1| - 1.3e-23 84.1 0.5 3.7e-23 82.6 0.5 1.6 1 1 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.22 gi|433590449|ref|YP_007279945.1| - 3.9e-16 59.3 15.7 3.9e-16 59.3 15.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Far-17a_AIG1 PF04750.14 gi|433590449|ref|YP_007279945.1| - 0.024 13.9 3.1 0.05 12.9 0.0 2.5 3 0 0 3 3 3 0 FAR-17a/AIG1-like protein Sigma_reg_N PF13800.6 gi|433590449|ref|YP_007279945.1| - 3.8 7.8 0.0 3.8 7.8 0.0 3.3 4 0 0 4 4 4 0 Sigma factor regulator N-terminal BPD_transp_1 PF00528.22 gi|433590450|ref|YP_007279946.1| - 6.3e-22 78.2 19.6 6.3e-22 78.2 19.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|433590451|ref|YP_007279947.1| - 8.9e-29 100.8 0.0 1.4e-28 100.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433590451|ref|YP_007279947.1| - 1.1e-11 45.1 0.0 4.9e-05 23.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|433590451|ref|YP_007279947.1| - 3.9e-09 36.3 0.1 3e-08 33.4 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|433590451|ref|YP_007279947.1| - 1.7e-06 28.0 0.0 0.00026 20.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|433590451|ref|YP_007279947.1| - 3.3e-05 24.2 0.0 9.2e-05 22.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|433590451|ref|YP_007279947.1| - 0.00025 21.6 0.0 0.0006 20.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|433590451|ref|YP_007279947.1| - 0.00052 20.0 0.1 0.0025 17.8 0.1 2.0 1 1 1 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|433590451|ref|YP_007279947.1| - 0.00067 19.3 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|433590451|ref|YP_007279947.1| - 0.001 19.5 0.4 0.0064 16.9 0.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|433590451|ref|YP_007279947.1| - 0.0073 15.9 0.1 0.14 11.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|433590451|ref|YP_007279947.1| - 0.0081 15.9 0.1 0.52 10.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|433590451|ref|YP_007279947.1| - 0.0083 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain DeoRC PF00455.22 gi|433590451|ref|YP_007279947.1| - 0.019 14.9 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain PRK PF00485.18 gi|433590451|ref|YP_007279947.1| - 0.054 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATPase_2 PF01637.18 gi|433590451|ref|YP_007279947.1| - 0.08 12.8 0.0 0.89 9.4 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea KdpD PF02702.17 gi|433590451|ref|YP_007279947.1| - 0.089 12.2 0.1 0.14 11.6 0.1 1.2 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_33 PF13671.6 gi|433590451|ref|YP_007279947.1| - 0.11 12.6 0.0 0.33 11.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain NACHT PF05729.12 gi|433590451|ref|YP_007279947.1| - 0.19 11.6 0.0 0.41 10.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain YdjM PF04307.14 gi|433590452|ref|YP_007279948.1| - 2.2e-13 49.9 11.0 3.2e-13 49.4 11.0 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PhoU PF01895.19 gi|433590453|ref|YP_007279949.1| - 2.3e-37 127.3 15.8 1.1e-20 73.9 1.9 2.2 2 0 0 2 2 2 2 PhoU domain Mod_r PF07200.13 gi|433590453|ref|YP_007279949.1| - 0.87 9.7 3.9 1.1 9.4 0.3 2.5 2 1 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein FAD_binding_3 PF01494.19 gi|433590456|ref|YP_007279952.1| - 2.9e-14 53.1 0.8 7.4e-14 51.8 0.8 1.6 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|433590456|ref|YP_007279952.1| - 1.4e-06 27.8 3.1 0.0013 18.0 0.8 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|433590456|ref|YP_007279952.1| - 4.4e-06 26.3 0.1 6.7e-06 25.7 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|433590456|ref|YP_007279952.1| - 7.5e-06 25.8 5.5 0.00082 19.0 1.5 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|433590456|ref|YP_007279952.1| - 2.4e-05 24.5 2.3 6.4e-05 23.1 0.9 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|433590456|ref|YP_007279952.1| - 7.9e-05 21.9 4.2 0.0015 17.7 4.2 2.2 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|433590456|ref|YP_007279952.1| - 0.00041 19.2 1.9 0.0015 17.3 0.9 1.9 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|433590456|ref|YP_007279952.1| - 0.0012 18.2 0.1 0.0019 17.5 0.1 1.3 1 0 0 1 1 1 1 Thi4 family ETF_QO PF05187.13 gi|433590456|ref|YP_007279952.1| - 0.0013 18.9 0.1 0.0023 18.0 0.1 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Pyr_redox_3 PF13738.6 gi|433590456|ref|YP_007279952.1| - 0.015 14.6 0.7 0.024 13.9 0.7 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|433590456|ref|YP_007279952.1| - 0.042 12.9 1.4 2.1 7.3 0.7 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|433590456|ref|YP_007279952.1| - 0.069 12.0 0.4 0.33 9.7 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.27 gi|433590456|ref|YP_007279952.1| - 0.12 13.0 1.4 19 5.9 0.6 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|433590456|ref|YP_007279952.1| - 0.71 9.1 4.2 21 4.2 0.9 2.8 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|433590456|ref|YP_007279952.1| - 0.89 8.6 4.6 0.42 9.7 2.3 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A Fer4_2 PF12797.7 gi|433590456|ref|YP_007279952.1| - 4 7.7 6.0 0.45 10.7 0.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain ETF_alpha PF00766.19 gi|433590457|ref|YP_007279953.1| - 1.4e-24 85.9 0.8 2.3e-24 85.2 0.3 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|433590457|ref|YP_007279953.1| - 1.7e-19 70.4 0.0 3.4e-19 69.4 0.0 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|433590458|ref|YP_007279954.1| - 1.2e-35 123.0 0.1 1.6e-35 122.7 0.1 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Bactofilin PF04519.13 gi|433590459|ref|YP_007279955.1| - 2.6e-11 43.7 5.0 1.3e-08 35.0 0.3 3.0 2 1 0 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|433590459|ref|YP_007279955.1| - 1.4e-06 27.8 17.3 0.0058 16.3 0.1 6.7 5 2 1 7 7 7 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|433590459|ref|YP_007279955.1| - 0.0033 17.1 15.8 0.22 11.3 0.8 5.9 5 2 0 5 5 5 3 Hexapeptide repeat of succinyl-transferase DUF3494 PF11999.8 gi|433590459|ref|YP_007279955.1| - 0.042 13.5 0.0 1.1 8.8 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3494) DUF3672 PF12421.8 gi|433590459|ref|YP_007279955.1| - 0.075 12.9 1.6 1.5 8.7 0.6 3.1 2 1 0 2 2 2 0 Fibronectin type III protein DUF420 PF04238.12 gi|433590461|ref|YP_007279957.1| - 6.4e-34 117.1 5.9 9.7e-34 116.5 5.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|433590461|ref|YP_007279957.1| - 0.00032 20.9 5.8 0.00032 20.9 5.8 2.2 1 1 1 2 2 2 2 Predicted membrane protein (DUF2306) DUF5389 PF17364.2 gi|433590461|ref|YP_007279957.1| - 0.0026 17.8 2.0 0.0057 16.7 2.0 1.5 1 0 0 1 1 1 1 Family of unknown function (DUF5389) DUF456 PF04306.13 gi|433590462|ref|YP_007279958.1| - 0.0025 18.1 5.9 0.0027 18.0 5.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF456) DUF2512 PF10710.9 gi|433590462|ref|YP_007279958.1| - 0.0053 16.4 5.1 0.0063 16.2 5.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2512) SNARE_assoc PF09335.11 gi|433590463|ref|YP_007279959.1| - 8.4e-13 48.9 0.6 8.4e-13 48.9 0.6 2.4 2 1 1 3 3 3 1 SNARE associated Golgi protein zf-ACC PF17848.1 gi|433590464|ref|YP_007279960.1| - 0.1 12.7 5.8 0.98 9.6 5.8 2.1 1 1 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain Ogr_Delta PF04606.12 gi|433590464|ref|YP_007279960.1| - 0.13 12.3 7.1 0.24 11.4 7.1 1.6 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger Auto_anti-p27 PF06677.12 gi|433590464|ref|YP_007279960.1| - 0.41 10.8 4.1 0.59 10.3 4.1 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-Mss51 PF13824.6 gi|433590464|ref|YP_007279960.1| - 0.56 10.3 8.2 0.75 9.9 8.2 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribonuc_red_lgC PF02867.15 gi|433590465|ref|YP_007279961.1| - 2.5e-154 514.7 0.0 3.1e-154 514.4 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|433590465|ref|YP_007279961.1| - 3.3e-24 84.7 0.1 1.2e-23 82.9 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain DUF2461 PF09365.10 gi|433590465|ref|YP_007279961.1| - 0.019 14.9 0.1 0.28 11.1 0.1 2.7 3 0 0 3 3 3 0 Conserved hypothetical protein (DUF2461) zf-RRN7 PF11781.8 gi|433590465|ref|YP_007279961.1| - 0.38 10.5 3.8 0.81 9.4 3.8 1.5 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PADR1 PF08063.12 gi|433590465|ref|YP_007279961.1| - 0.5 10.2 4.4 1.1 9.1 4.4 1.6 1 0 0 1 1 1 0 PADR1 (NUC008) domain DUF5325 PF17259.2 gi|433590467|ref|YP_007279963.1| - 0.14 12.0 7.5 0.18 11.7 7.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5325) GATase PF00117.28 gi|433590468|ref|YP_007279964.1| - 1.4e-44 152.1 0.0 1.6e-44 151.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|433590468|ref|YP_007279964.1| - 1.4e-06 28.2 0.0 5.3e-06 26.4 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 Glu_synthase PF01645.17 gi|433590468|ref|YP_007279964.1| - 0.18 10.9 0.0 0.25 10.4 0.0 1.1 1 0 0 1 1 1 0 Conserved region in glutamate synthase Chorismate_bind PF00425.18 gi|433590469|ref|YP_007279965.1| - 3.3e-90 302.1 0.0 1.7e-88 296.5 0.0 2.1 2 0 0 2 2 2 2 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|433590469|ref|YP_007279965.1| - 2.2e-17 63.6 0.2 5.2e-15 55.9 0.1 3.4 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|433590470|ref|YP_007279966.1| - 4.9e-35 121.1 0.0 5.6e-35 120.9 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DeoC PF01791.9 gi|433590470|ref|YP_007279966.1| - 0.039 13.5 0.8 3.1 7.4 0.2 2.8 2 2 1 3 3 3 0 DeoC/LacD family aldolase Glycos_transf_3 PF00591.21 gi|433590471|ref|YP_007279967.1| - 1.1e-92 310.2 5.3 2.6e-92 309.0 5.3 1.5 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|433590471|ref|YP_007279967.1| - 2.7e-16 59.1 4.8 8.4e-16 57.6 3.3 2.2 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|433590471|ref|YP_007279967.1| - 0.02 14.6 0.0 0.049 13.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) TAT_signal PF10518.9 gi|433590472|ref|YP_007279968.1| - 0.00046 19.9 1.1 0.00046 19.9 1.1 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence UbiD PF01977.16 gi|433590472|ref|YP_007279968.1| - 0.044 12.6 0.3 0.056 12.3 0.3 1.1 1 0 0 1 1 1 0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Mem_trans PF03547.18 gi|433590473|ref|YP_007279969.1| - 1.1e-22 80.0 18.7 6.1e-13 47.9 10.2 2.0 1 1 1 2 2 2 2 Membrane transport protein PRCC PF10253.9 gi|433590474|ref|YP_007279970.1| - 0.54 11.0 10.9 0.86 10.3 10.9 1.3 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting Virul_fac_BrkB PF03631.15 gi|433590475|ref|YP_007279971.1| - 3.1e-46 158.1 26.1 3.8e-46 157.8 26.1 1.0 1 0 0 1 1 1 1 Virulence factor BrkB TMEM43 PF07787.12 gi|433590475|ref|YP_007279971.1| - 1.3 8.4 9.5 2.4 7.5 2.0 2.8 1 1 2 3 3 3 0 Transmembrane protein 43 SLATT_1 PF18181.1 gi|433590475|ref|YP_007279971.1| - 2.1 8.3 5.4 2 8.4 0.2 3.1 2 1 1 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 1 CAP PF00188.26 gi|433590476|ref|YP_007279972.1| - 1.9e-13 51.3 0.0 3e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Cysteine-rich secretory protein family CBS PF00571.28 gi|433590478|ref|YP_007279974.1| - 7e-38 128.9 12.2 1.4e-13 51.0 0.2 4.4 4 0 0 4 4 4 4 CBS domain GAF PF01590.26 gi|433590478|ref|YP_007279974.1| - 0.0024 18.5 0.5 15 6.2 0.0 3.2 2 1 1 3 3 3 2 GAF domain Ribosomal_S30AE PF02482.19 gi|433590478|ref|YP_007279974.1| - 0.015 16.1 0.0 0.046 14.5 0.0 1.8 1 1 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein Rad51 PF08423.11 gi|433590479|ref|YP_007279975.1| - 9.5e-26 90.6 0.0 1.3e-25 90.2 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|433590479|ref|YP_007279975.1| - 2e-14 53.6 0.4 2.9e-14 53.1 0.4 1.1 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|433590479|ref|YP_007279975.1| - 4.2e-11 42.6 0.0 1.4e-10 40.9 0.0 1.7 1 1 0 1 1 1 1 KaiC RecA PF00154.21 gi|433590479|ref|YP_007279975.1| - 3.1e-09 36.7 0.0 3.7e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.12 gi|433590479|ref|YP_007279975.1| - 3.7e-08 33.2 0.0 4.5e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.6 gi|433590479|ref|YP_007279975.1| - 1.4e-06 28.2 0.0 5.3e-06 26.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|433590479|ref|YP_007279975.1| - 0.0013 18.1 0.0 0.0027 17.1 0.0 1.6 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|433590479|ref|YP_007279975.1| - 0.0043 17.5 0.2 0.0061 17.0 0.2 1.2 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|433590479|ref|YP_007279975.1| - 0.029 14.1 0.1 0.051 13.3 0.1 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|433590479|ref|YP_007279975.1| - 0.059 13.3 0.0 0.069 13.1 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF460 PF04312.13 gi|433590480|ref|YP_007279976.1| - 0.036 13.8 0.2 0.082 12.6 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF460) Big_3_3 PF13750.6 gi|433590480|ref|YP_007279976.1| - 0.065 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) VbhA PF18495.1 gi|433590480|ref|YP_007279976.1| - 0.076 12.9 9.1 0.54 10.2 1.5 3.6 3 0 0 3 3 3 0 Antitoxin VbhA DUF111 PF01969.17 gi|433590484|ref|YP_007279980.1| - 4.5e-132 440.7 1.9 5.6e-132 440.3 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 Transcrip_reg PF01709.20 gi|433590484|ref|YP_007279980.1| - 0.03 13.7 0.5 0.068 12.6 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator gag-asp_proteas PF13975.6 gi|433590484|ref|YP_007279980.1| - 0.2 12.2 0.8 3.1 8.4 0.1 2.9 3 0 0 3 3 3 0 gag-polyprotein putative aspartyl protease AAA PF00004.29 gi|433590485|ref|YP_007279981.1| - 2.3e-100 332.2 0.0 2.1e-49 167.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|433590485|ref|YP_007279981.1| - 1.1e-30 105.7 0.0 6.7e-30 103.1 0.1 2.4 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|433590485|ref|YP_007279981.1| - 2.1e-29 101.0 2.3 2.1e-14 53.1 1.0 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_2 PF02933.17 gi|433590485|ref|YP_007279981.1| - 1.3e-15 56.9 0.2 8e-15 54.4 0.2 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|433590485|ref|YP_007279981.1| - 3.9e-15 56.0 0.0 7.7e-07 29.0 0.0 2.8 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|433590485|ref|YP_007279981.1| - 4.5e-14 53.2 0.8 1e-05 26.0 0.2 4.3 2 2 1 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|433590485|ref|YP_007279981.1| - 4.7e-13 49.3 1.5 7.5e-05 22.7 0.0 3.9 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|433590485|ref|YP_007279981.1| - 6.4e-13 49.2 0.0 1.8e-05 24.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|433590485|ref|YP_007279981.1| - 3.3e-11 43.6 0.6 0.0011 19.2 0.1 4.2 2 2 1 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|433590485|ref|YP_007279981.1| - 6.3e-11 42.6 0.0 6.8e-05 23.1 0.0 2.7 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|433590485|ref|YP_007279981.1| - 1.1e-10 41.3 0.0 0.00041 19.7 0.0 3.2 4 0 0 4 4 3 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|433590485|ref|YP_007279981.1| - 8e-08 32.4 0.0 0.005 16.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|433590485|ref|YP_007279981.1| - 9.2e-08 32.0 0.0 0.017 14.9 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|433590485|ref|YP_007279981.1| - 4.6e-07 30.5 0.0 0.067 13.7 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_25 PF13481.6 gi|433590485|ref|YP_007279981.1| - 4.7e-07 29.6 1.4 2.1 7.9 0.0 4.5 4 0 0 4 4 4 1 AAA domain RNA_helicase PF00910.22 gi|433590485|ref|YP_007279981.1| - 6.5e-07 29.7 0.0 0.057 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|433590485|ref|YP_007279981.1| - 1.3e-06 28.0 0.1 0.055 12.8 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|433590485|ref|YP_007279981.1| - 5.2e-06 26.1 0.0 0.12 11.9 0.0 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|433590485|ref|YP_007279981.1| - 6.6e-06 25.9 0.0 0.19 11.4 0.0 3.1 4 0 0 4 4 2 2 Sigma-54 interaction domain AAA_28 PF13521.6 gi|433590485|ref|YP_007279981.1| - 7.1e-06 26.4 0.0 0.038 14.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|433590485|ref|YP_007279981.1| - 1.1e-05 24.9 0.1 0.5 9.7 0.0 3.5 3 0 0 3 3 3 2 KaiC AAA_3 PF07726.11 gi|433590485|ref|YP_007279981.1| - 1.3e-05 25.1 0.0 0.17 11.8 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|433590485|ref|YP_007279981.1| - 2.7e-05 24.2 0.0 0.18 11.8 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|433590485|ref|YP_007279981.1| - 3.6e-05 23.6 0.0 0.14 11.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|433590485|ref|YP_007279981.1| - 4.6e-05 22.7 0.0 0.24 10.6 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Vps4_C PF09336.10 gi|433590485|ref|YP_007279981.1| - 5.3e-05 23.1 0.6 0.016 15.2 0.0 2.9 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain ABC_tran PF00005.27 gi|433590485|ref|YP_007279981.1| - 6.9e-05 23.4 0.0 0.46 11.0 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_30 PF13604.6 gi|433590485|ref|YP_007279981.1| - 6.9e-05 22.6 0.4 0.51 10.0 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_11 PF13086.6 gi|433590485|ref|YP_007279981.1| - 7.6e-05 22.6 0.0 0.31 10.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|433590485|ref|YP_007279981.1| - 9.1e-05 22.0 0.9 0.44 10.0 0.0 3.0 3 0 0 3 3 3 2 PhoH-like protein NB-ARC PF00931.22 gi|433590485|ref|YP_007279981.1| - 0.00014 21.2 0.0 0.12 11.5 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain ATPase_2 PF01637.18 gi|433590485|ref|YP_007279981.1| - 0.00027 20.9 0.0 0.88 9.4 0.0 3.5 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|433590485|ref|YP_007279981.1| - 0.00029 20.2 0.0 0.34 10.1 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.6 gi|433590485|ref|YP_007279981.1| - 0.0003 21.2 0.1 0.99 9.8 0.0 3.6 4 0 0 4 4 3 1 AAA domain Parvo_NS1 PF01057.17 gi|433590485|ref|YP_007279981.1| - 0.00044 19.4 0.2 0.51 9.4 0.1 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|433590485|ref|YP_007279981.1| - 0.00046 20.1 0.2 0.57 10.1 0.0 3.1 3 0 0 3 3 2 1 NACHT domain Zeta_toxin PF06414.12 gi|433590485|ref|YP_007279981.1| - 0.00049 19.4 0.2 0.86 8.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin IPT PF01745.16 gi|433590485|ref|YP_007279981.1| - 0.0016 17.9 0.9 0.54 9.6 0.0 2.9 3 0 0 3 3 3 1 Isopentenyl transferase Sigma54_activ_2 PF14532.6 gi|433590485|ref|YP_007279981.1| - 0.0017 18.5 0.0 2.9 8.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|433590485|ref|YP_007279981.1| - 0.0022 17.9 0.2 3.9 7.3 0.0 3.2 2 1 1 3 3 2 0 NTPase AAA_19 PF13245.6 gi|433590485|ref|YP_007279981.1| - 0.003 17.9 0.8 4.2 7.7 0.0 2.8 2 1 0 3 3 2 0 AAA domain Bac_DnaA PF00308.18 gi|433590485|ref|YP_007279981.1| - 0.0049 16.7 0.1 3.9 7.3 0.0 2.8 3 0 0 3 3 2 0 Bacterial dnaA protein Cytidylate_kin PF02224.18 gi|433590485|ref|YP_007279981.1| - 0.0076 16.0 0.1 4.4 7.0 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|433590485|ref|YP_007279981.1| - 0.015 15.1 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.14 gi|433590485|ref|YP_007279981.1| - 0.021 14.1 0.1 4.6 6.4 0.0 2.8 2 2 1 4 4 4 0 KAP family P-loop domain ResIII PF04851.15 gi|433590485|ref|YP_007279981.1| - 0.025 14.6 0.0 8.8 6.3 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Torsin PF06309.11 gi|433590485|ref|YP_007279981.1| - 0.029 14.5 0.0 4.6 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin SKI PF01202.22 gi|433590485|ref|YP_007279981.1| - 0.033 14.3 0.0 7.8 6.6 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Hydin_ADK PF17213.3 gi|433590485|ref|YP_007279981.1| - 0.036 14.4 0.0 4.1 7.6 0.0 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Zot PF05707.12 gi|433590485|ref|YP_007279981.1| - 0.043 13.5 0.0 4.3 6.9 0.0 2.5 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) CPT PF07931.12 gi|433590485|ref|YP_007279981.1| - 0.046 13.5 0.0 3.8 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Rad17 PF03215.15 gi|433590485|ref|YP_007279981.1| - 0.056 13.4 0.0 10 6.0 0.0 2.7 2 1 0 2 2 2 0 Rad17 P-loop domain AFG1_ATPase PF03969.16 gi|433590485|ref|YP_007279981.1| - 0.064 12.1 0.0 1.8 7.4 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Cytidylate_kin2 PF13189.6 gi|433590485|ref|YP_007279981.1| - 0.091 12.9 0.0 8.8 6.4 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family KTI12 PF08433.10 gi|433590485|ref|YP_007279981.1| - 0.2 11.1 0.0 33 3.8 0.0 2.9 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Guanylate_kin PF00625.21 gi|433590485|ref|YP_007279981.1| - 0.22 11.2 0.4 68 3.1 0.0 3.4 3 1 1 4 4 3 0 Guanylate kinase DUF87 PF01935.17 gi|433590486|ref|YP_007279982.1| - 3.2e-07 30.7 0.0 9.2e-07 29.2 0.0 1.7 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|433590486|ref|YP_007279982.1| - 0.00027 19.7 0.2 0.016 13.9 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|433590486|ref|YP_007279982.1| - 0.0026 16.7 0.0 0.78 8.6 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|433590486|ref|YP_007279982.1| - 0.095 13.0 0.0 12 6.1 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|433590486|ref|YP_007279982.1| - 0.46 10.8 2.6 3.6 7.9 2.6 2.2 1 1 0 1 1 1 0 AAA ATPase domain DUF2718 PF10918.8 gi|433590487|ref|YP_007279983.1| - 0.21 12.1 0.2 0.37 11.3 0.1 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2718) RcpC PF16976.5 gi|433590488|ref|YP_007279984.1| - 0.015 15.4 0.2 0.98 9.5 0.2 2.6 1 1 0 1 1 1 0 Flp pilus assembly protein RcpC/CpaB TrkA_C PF02080.21 gi|433590489|ref|YP_007279985.1| - 0.00045 20.0 1.1 0.00092 19.0 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain AAA PF00004.29 gi|433590490|ref|YP_007279986.1| - 9.7e-96 317.3 0.0 1e-46 158.7 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|433590490|ref|YP_007279986.1| - 2e-27 94.7 3.9 3.1e-13 49.3 0.7 3.0 3 0 0 3 3 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|433590490|ref|YP_007279986.1| - 2.5e-21 75.6 2.2 4.7e-21 74.8 0.7 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|433590490|ref|YP_007279986.1| - 5.4e-16 58.7 0.0 3.3e-07 30.2 0.0 3.8 4 0 0 4 4 4 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|433590490|ref|YP_007279986.1| - 7.9e-14 52.4 0.5 0.0001 22.7 0.1 4.1 2 2 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|433590490|ref|YP_007279986.1| - 8.2e-14 52.1 0.0 1.6e-06 28.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|433590490|ref|YP_007279986.1| - 4e-13 49.5 0.2 6.3e-05 23.0 0.0 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|433590490|ref|YP_007279986.1| - 3.9e-12 46.5 0.0 2e-05 24.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|433590490|ref|YP_007279986.1| - 2.5e-09 37.5 0.1 0.0046 17.2 0.0 3.4 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|433590490|ref|YP_007279986.1| - 6.3e-09 36.0 0.0 0.0053 16.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|433590490|ref|YP_007279986.1| - 1.4e-08 34.4 0.0 0.0025 17.1 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_18 PF13238.6 gi|433590490|ref|YP_007279986.1| - 2.3e-08 34.6 0.1 0.0071 16.9 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.6 gi|433590490|ref|YP_007279986.1| - 4.6e-08 33.5 0.0 0.0058 16.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|433590490|ref|YP_007279986.1| - 1.6e-07 31.0 1.2 4.9e-07 29.4 0.2 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 RNA_helicase PF00910.22 gi|433590490|ref|YP_007279986.1| - 3.7e-07 30.5 0.0 0.022 15.1 0.0 2.4 2 0 0 2 2 2 2 RNA helicase AAA_3 PF07726.11 gi|433590490|ref|YP_007279986.1| - 5.8e-07 29.4 0.0 0.042 13.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|433590490|ref|YP_007279986.1| - 6.7e-07 29.2 0.0 0.024 14.4 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|433590490|ref|YP_007279986.1| - 8.3e-07 28.6 0.3 0.034 13.5 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|433590490|ref|YP_007279986.1| - 1.6e-06 28.2 0.0 0.073 13.1 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|433590490|ref|YP_007279986.1| - 1.6e-06 28.7 0.0 0.035 14.6 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.6 gi|433590490|ref|YP_007279986.1| - 3.6e-06 26.8 0.0 0.076 12.7 0.0 2.8 2 1 1 3 3 3 2 AAA domain Sigma54_activat PF00158.26 gi|433590490|ref|YP_007279986.1| - 1.5e-05 24.7 0.0 0.31 10.7 0.0 2.9 3 1 0 3 3 2 2 Sigma-54 interaction domain DUF815 PF05673.13 gi|433590490|ref|YP_007279986.1| - 1.9e-05 24.0 0.0 0.027 13.6 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|433590490|ref|YP_007279986.1| - 2e-05 24.0 0.0 0.047 13.0 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_7 PF12775.7 gi|433590490|ref|YP_007279986.1| - 2.5e-05 23.9 0.0 0.073 12.6 0.0 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_25 PF13481.6 gi|433590490|ref|YP_007279986.1| - 3.7e-05 23.4 6.2 0.51 9.9 0.7 4.4 2 2 1 3 3 3 2 AAA domain Parvo_NS1 PF01057.17 gi|433590490|ref|YP_007279986.1| - 3.9e-05 22.9 0.0 0.19 10.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_19 PF13245.6 gi|433590490|ref|YP_007279986.1| - 7.7e-05 23.1 1.1 0.057 13.8 0.0 2.9 3 1 0 3 3 2 1 AAA domain PhoH PF02562.16 gi|433590490|ref|YP_007279986.1| - 0.00018 21.1 0.1 0.76 9.2 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein Sigma54_activ_2 PF14532.6 gi|433590490|ref|YP_007279986.1| - 0.00018 21.6 0.0 0.93 9.6 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_11 PF13086.6 gi|433590490|ref|YP_007279986.1| - 0.00022 21.1 0.0 0.64 9.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|433590490|ref|YP_007279986.1| - 0.00025 20.8 0.1 0.79 9.4 0.0 3.2 3 0 0 3 3 2 2 AAA domain DUF2075 PF09848.9 gi|433590490|ref|YP_007279986.1| - 0.00037 19.9 0.0 0.46 9.7 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 gi|433590490|ref|YP_007279986.1| - 0.00065 19.7 0.0 2.4 8.0 0.0 3.3 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|433590490|ref|YP_007279986.1| - 0.00073 19.0 0.0 1.7 8.0 0.0 2.8 2 0 0 2 2 2 2 KaiC NACHT PF05729.12 gi|433590490|ref|YP_007279986.1| - 0.00094 19.1 0.1 1.6 8.6 0.0 3.1 3 0 0 3 3 3 1 NACHT domain NB-ARC PF00931.22 gi|433590490|ref|YP_007279986.1| - 0.0013 17.9 0.0 0.41 9.8 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_17 PF13207.6 gi|433590490|ref|YP_007279986.1| - 0.0022 18.4 0.0 2 8.8 0.0 3.1 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|433590490|ref|YP_007279986.1| - 0.005 16.3 0.0 13 5.1 0.0 3.8 3 1 1 4 4 4 0 Bacterial TniB protein NTPase_1 PF03266.15 gi|433590490|ref|YP_007279986.1| - 0.0082 16.1 0.0 8.7 6.2 0.0 3.4 3 1 0 3 3 3 0 NTPase AFG1_ATPase PF03969.16 gi|433590490|ref|YP_007279986.1| - 0.025 13.5 0.0 2.3 7.0 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase SKI PF01202.22 gi|433590490|ref|YP_007279986.1| - 0.031 14.4 0.0 3.9 7.6 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Cytidylate_kin PF02224.18 gi|433590490|ref|YP_007279986.1| - 0.059 13.1 0.0 8.6 6.0 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase Bac_DnaA PF00308.18 gi|433590490|ref|YP_007279986.1| - 0.081 12.7 0.0 8.9 6.1 0.0 2.5 2 0 0 2 2 2 0 Bacterial dnaA protein HTH_10 PF04967.12 gi|433590491|ref|YP_007279987.1| - 5.6e-14 51.7 0.0 8.4e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|433590491|ref|YP_007279987.1| - 5.8e-08 32.8 1.2 6.4e-08 32.6 0.2 1.5 2 0 0 2 2 2 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|433590491|ref|YP_007279987.1| - 0.0067 15.9 0.1 0.011 15.2 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|433590491|ref|YP_007279987.1| - 0.01 15.7 0.8 0.032 14.1 0.8 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Ribonuc_red_sm PF00268.21 gi|433590492|ref|YP_007279988.1| - 6.2e-12 45.6 0.0 9e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain zf-C2H2_3 PF13878.6 gi|433590493|ref|YP_007279989.1| - 0.015 15.2 3.4 0.028 14.2 3.4 1.5 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO Zn-ribbon_8 PF09723.10 gi|433590493|ref|YP_007279989.1| - 0.032 14.3 0.8 0.041 14.0 0.8 1.2 1 0 0 1 1 1 0 Zinc ribbon domain GHMP_kinases_N PF00288.26 gi|433590496|ref|YP_007279992.1| - 1.1e-11 44.8 2.2 1.1e-11 44.8 2.2 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|433590496|ref|YP_007279992.1| - 0.0014 19.0 1.2 0.0028 18.0 0.0 2.2 2 0 0 2 2 2 1 GHMP kinases C terminal CM_2 PF01817.21 gi|433590497|ref|YP_007279993.1| - 6.2e-16 58.5 3.1 7.3e-16 58.3 3.1 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF3543 PF12063.8 gi|433590497|ref|YP_007279993.1| - 0.047 13.1 0.1 0.059 12.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3543) PemK_toxin PF02452.17 gi|433590498|ref|YP_007279994.1| - 4.2e-27 94.7 0.1 4.7e-27 94.6 0.1 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system TrkA_C PF02080.21 gi|433590498|ref|YP_007279994.1| - 0.088 12.7 0.3 0.24 11.2 0.0 1.8 2 0 0 2 2 2 0 TrkA-C domain Zn-ribbon_8 PF09723.10 gi|433590500|ref|YP_007279996.1| - 0.042 14.0 2.8 0.11 12.6 2.5 1.7 1 1 0 1 1 1 0 Zinc ribbon domain GATA PF00320.27 gi|433590500|ref|YP_007279996.1| - 0.051 13.2 0.1 0.13 11.8 0.1 1.6 1 1 0 1 1 1 0 GATA zinc finger RNHCP PF12647.7 gi|433590500|ref|YP_007279996.1| - 0.062 13.3 0.3 0.1 12.6 0.3 1.3 1 1 0 1 1 1 0 RNHCP domain RHH_1 PF01402.21 gi|433590501|ref|YP_007279997.1| - 0.014 15.3 3.6 0.018 14.9 3.6 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family GIIM PF08388.11 gi|433590501|ref|YP_007279997.1| - 0.094 12.8 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Group II intron, maturase-specific domain DDE_Tnp_1 PF01609.21 gi|433590503|ref|YP_007279999.1| - 3.2e-10 40.0 3.3 4.9e-10 39.4 3.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433590503|ref|YP_007279999.1| - 0.17 11.9 0.5 0.48 10.5 0.3 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) Big_1 PF02369.16 gi|433590504|ref|YP_007280000.1| - 0.0025 17.8 51.6 0.0076 16.2 5.2 8.0 7 0 0 7 7 7 3 Bacterial Ig-like domain (group 1) Glyco_hydro2_C5 PF18565.1 gi|433590504|ref|YP_007280000.1| - 0.0032 17.3 6.5 0.0058 16.5 2.0 3.6 2 1 0 2 2 2 1 Glycoside hydrolase family 2 C-terminal domain 5 Transglut_C PF00927.22 gi|433590504|ref|YP_007280000.1| - 0.051 13.7 0.0 25 5.0 0.0 3.1 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.9 gi|433590504|ref|YP_007280000.1| - 0.46 10.8 18.8 25 5.2 0.4 7.2 6 1 1 7 7 7 0 NPCBM-associated, NEW3 domain of alpha-galactosidase MG4 PF17789.1 gi|433590504|ref|YP_007280000.1| - 0.47 10.6 20.5 4.1 7.6 0.2 5.9 6 0 0 6 6 6 0 Macroglobulin domain MG4 DUF824 PF05688.11 gi|433590504|ref|YP_007280000.1| - 4 7.3 15.2 0.25 11.2 0.3 5.0 5 0 0 5 5 5 0 Salmonella repeat of unknown function (DUF824) Peptidase_S8 PF00082.22 gi|433590505|ref|YP_007280001.1| - 7.6e-47 160.0 9.5 2.3e-46 158.4 9.5 1.9 1 1 0 1 1 1 1 Subtilase family Coat_X PF07552.11 gi|433590505|ref|YP_007280001.1| - 2.3 8.1 4.8 7.2 6.5 0.1 2.6 2 0 0 2 2 2 0 Spore Coat Protein X and V domain DDE_3 PF13358.6 gi|433590506|ref|YP_007280002.1| - 1.6e-14 53.9 0.0 1.5e-13 50.8 0.0 2.1 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|433590506|ref|YP_007280002.1| - 2.3e-11 44.1 0.3 9.4e-11 42.2 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|433590506|ref|YP_007280002.1| - 4.4e-10 39.4 0.0 1.4e-09 37.9 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433590506|ref|YP_007280002.1| - 6.7e-09 35.3 0.0 1.5e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|433590506|ref|YP_007280002.1| - 1.2e-05 24.8 0.0 8.6e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|433590506|ref|YP_007280002.1| - 2.7e-05 24.2 0.0 6.8e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|433590506|ref|YP_007280002.1| - 0.0018 18.3 0.1 0.0041 17.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|433590506|ref|YP_007280002.1| - 0.0023 17.4 0.0 0.0074 15.8 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 DDE_1 PF03184.19 gi|433590506|ref|YP_007280002.1| - 0.0027 17.4 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF746 PF05344.11 gi|433590506|ref|YP_007280002.1| - 0.016 15.1 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.6 gi|433590506|ref|YP_007280002.1| - 0.041 14.4 0.0 0.091 13.3 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.12 gi|433590506|ref|YP_007280002.1| - 0.058 13.1 0.1 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 rve PF00665.26 gi|433590506|ref|YP_007280002.1| - 0.064 13.5 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain Fn3-like PF14310.6 gi|433590507|ref|YP_007280003.1| - 0.022 14.9 0.2 0.38 10.9 0.0 2.5 2 0 0 2 2 2 0 Fibronectin type III-like domain Collagen PF01391.18 gi|433590508|ref|YP_007280004.1| - 1.4e-06 27.9 20.3 1.4e-06 27.9 20.3 2.5 2 0 0 2 2 2 1 Collagen triple helix repeat (20 copies) PGF-CTERM PF18204.1 gi|433590508|ref|YP_007280004.1| - 1.5e-05 24.8 6.7 1.5e-05 24.8 6.7 2.0 2 0 0 2 2 2 1 PGF-CTERM motif Gmad2 PF10648.9 gi|433590508|ref|YP_007280004.1| - 0.0034 17.6 3.2 0.98 9.7 0.0 4.0 3 0 0 3 3 3 1 Immunoglobulin-like domain of bacterial spore germination Multi_ubiq PF14452.6 gi|433590508|ref|YP_007280004.1| - 0.015 15.6 0.6 2.5 8.4 0.1 3.7 3 0 0 3 3 3 0 Multiubiquitin Cupredoxin_1 PF13473.6 gi|433590508|ref|YP_007280004.1| - 0.11 12.6 0.0 1.3 9.2 0.0 2.7 1 1 1 2 2 2 0 Cupredoxin-like domain Plexin_cytopl PF08337.12 gi|433590508|ref|YP_007280004.1| - 0.28 9.8 0.2 0.43 9.2 0.2 1.2 1 0 0 1 1 1 0 Plexin cytoplasmic RasGAP domain TcfC PF16967.5 gi|433590509|ref|YP_007280005.1| - 0.035 13.6 0.0 0.18 11.3 0.0 2.2 2 0 0 2 2 2 0 E-set like domain DUF2141 PF09912.9 gi|433590509|ref|YP_007280005.1| - 0.14 12.1 0.3 5.2 7.0 0.0 3.2 3 1 1 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2141) EF-hand_5 PF13202.6 gi|433590509|ref|YP_007280005.1| - 0.43 10.2 1.7 2.6 7.7 0.4 2.8 2 0 0 2 2 2 0 EF hand MMPL PF03176.15 gi|433590510|ref|YP_007280006.1| - 9e-32 110.3 25.2 3.5e-17 62.3 7.8 2.7 2 1 0 2 2 2 2 MMPL family Patched PF02460.18 gi|433590510|ref|YP_007280006.1| - 2.4e-10 39.2 25.9 3.4e-10 38.7 7.0 2.2 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.8 gi|433590510|ref|YP_007280006.1| - 1.8e-06 27.9 18.0 3e-06 27.2 2.0 2.9 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation CARDB PF07705.11 gi|433590511|ref|YP_007280007.1| - 9.7e-14 51.5 8.4 0.00059 20.0 0.4 4.4 3 1 1 4 4 4 4 CARDB NPCBM_assoc PF10633.9 gi|433590511|ref|YP_007280007.1| - 1.7e-11 44.2 13.5 0.00016 21.9 0.3 6.8 5 3 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|433590511|ref|YP_007280007.1| - 2.8e-10 40.4 18.8 0.026 14.8 0.1 5.6 3 2 1 4 4 4 3 Domain of unknown function DUF11 Transglut_C PF00927.22 gi|433590511|ref|YP_007280007.1| - 2.8e-05 24.2 0.0 0.39 10.9 0.0 4.2 4 1 0 4 4 4 1 Transglutaminase family, C-terminal ig like domain TRAP_beta PF05753.14 gi|433590511|ref|YP_007280007.1| - 0.00036 20.0 1.8 0.49 9.8 0.1 3.4 2 1 0 3 3 3 2 Translocon-associated protein beta (TRAPB) Ig_GlcNase PF18368.1 gi|433590511|ref|YP_007280007.1| - 0.00043 20.4 1.6 2.6 8.2 0.1 4.0 3 1 0 3 3 3 1 Exo-beta-D-glucosaminidase Ig-fold domain DUF2393 PF09624.10 gi|433590511|ref|YP_007280007.1| - 0.021 14.8 0.0 3.1 7.8 0.0 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF2393) Fn3-like PF14310.6 gi|433590511|ref|YP_007280007.1| - 0.029 14.5 2.4 2.1 8.5 0.0 4.1 5 0 0 5 5 5 0 Fibronectin type III-like domain ASH PF15780.5 gi|433590511|ref|YP_007280007.1| - 0.04 14.1 2.5 13 6.0 0.0 4.7 5 0 0 5 5 5 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF4832 PF16116.5 gi|433590511|ref|YP_007280007.1| - 0.045 13.6 0.1 15 5.4 0.0 4.0 3 2 2 5 5 5 0 Domain of unknown function (DUF4832) Pyr_redox_2 PF07992.14 gi|433590512|ref|YP_007280008.1| - 5.5e-42 144.0 1.7 6.9e-42 143.7 1.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.24 gi|433590512|ref|YP_007280008.1| - 3.1e-19 68.9 0.1 7.6e-19 67.7 0.1 1.7 1 0 0 1 1 1 1 Glutaredoxin Pyr_redox_3 PF13738.6 gi|433590512|ref|YP_007280008.1| - 4.3e-18 65.6 1.4 4.7e-16 58.9 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|433590512|ref|YP_007280008.1| - 5e-15 55.8 3.4 3e-14 53.3 0.7 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|433590512|ref|YP_007280008.1| - 2.5e-05 23.5 0.4 0.046 12.8 0.0 3.2 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|433590512|ref|YP_007280008.1| - 0.00013 21.7 2.7 0.17 11.4 0.0 3.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|433590512|ref|YP_007280008.1| - 0.00043 20.7 0.1 0.019 15.4 0.0 2.8 3 1 0 3 3 2 1 Putative NAD(P)-binding GST_N_3 PF13417.6 gi|433590512|ref|YP_007280008.1| - 0.00087 19.6 0.0 0.0015 18.9 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|433590512|ref|YP_007280008.1| - 0.0015 18.9 0.1 0.0046 17.3 0.1 1.8 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 gi|433590512|ref|YP_007280008.1| - 0.0016 18.5 0.0 0.027 14.5 0.0 2.8 3 0 0 3 3 3 1 Thioredoxin domain NAD_binding_8 PF13450.6 gi|433590512|ref|YP_007280008.1| - 0.0022 18.2 0.7 0.014 15.6 0.1 2.6 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|433590512|ref|YP_007280008.1| - 0.003 16.3 0.4 0.83 8.3 0.1 2.9 4 0 0 4 4 4 2 HI0933-like protein SH3BGR PF04908.15 gi|433590512|ref|YP_007280008.1| - 0.0035 17.5 0.1 0.0069 16.5 0.1 1.5 1 0 0 1 1 1 1 SH3-binding, glutamic acid-rich protein FAD_oxidored PF12831.7 gi|433590512|ref|YP_007280008.1| - 0.0062 15.9 0.6 0.016 14.6 0.1 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|433590512|ref|YP_007280008.1| - 0.076 12.3 0.3 2.1 7.6 0.0 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|433590512|ref|YP_007280008.1| - 0.12 11.2 2.0 7.8 5.2 0.1 2.8 3 0 0 3 3 3 0 Tryptophan halogenase DUF357 PF04010.13 gi|433590513|ref|YP_007280009.1| - 8.8e-32 109.0 0.5 1e-31 108.8 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) TFIIB PF00382.19 gi|433590514|ref|YP_007280010.1| - 1.4e-39 133.9 0.1 5.5e-20 71.2 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433590514|ref|YP_007280010.1| - 2.8e-16 58.7 4.1 5.9e-16 57.7 4.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|433590514|ref|YP_007280010.1| - 2.1e-05 24.6 0.0 0.00045 20.3 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain zf-ribbon_3 PF13248.6 gi|433590514|ref|YP_007280010.1| - 0.0072 15.7 2.8 0.11 12.0 0.2 2.2 1 1 1 2 2 2 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|433590514|ref|YP_007280010.1| - 0.016 15.2 3.2 0.043 13.9 3.2 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|433590514|ref|YP_007280010.1| - 0.016 15.1 1.2 0.035 14.0 1.0 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|433590514|ref|YP_007280010.1| - 0.018 15.1 0.5 0.03 14.3 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|433590514|ref|YP_007280010.1| - 0.026 14.5 2.7 0.076 13.0 2.7 1.8 1 0 0 1 1 1 0 Nudix N-terminal Auto_anti-p27 PF06677.12 gi|433590514|ref|YP_007280010.1| - 0.03 14.5 1.8 0.056 13.6 1.8 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Sigma70_r4 PF04545.16 gi|433590514|ref|YP_007280010.1| - 0.041 13.4 3.5 0.18 11.4 0.0 3.2 4 0 0 4 4 4 0 Sigma-70, region 4 Tex_YqgF PF16921.5 gi|433590514|ref|YP_007280010.1| - 0.11 12.9 0.5 3.1 8.3 0.3 2.2 2 0 0 2 2 2 0 Tex protein YqgF-like domain Zn-ribbon_8 PF09723.10 gi|433590514|ref|YP_007280010.1| - 0.25 11.5 5.1 1.5 9.0 0.8 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|433590514|ref|YP_007280010.1| - 0.83 10.1 3.7 0.44 11.0 0.8 2.1 2 0 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.6 gi|433590515|ref|YP_007280011.1| - 1.7e-05 24.7 0.3 2.4e-05 24.1 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|433590515|ref|YP_007280011.1| - 0.0012 18.8 2.2 0.24 11.4 0.2 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 gi|433590515|ref|YP_007280011.1| - 0.0015 18.0 0.6 0.24 10.9 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding HypA PF01155.19 gi|433590515|ref|YP_007280011.1| - 0.0034 17.4 0.3 0.0035 17.3 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1 PF03811.13 gi|433590515|ref|YP_007280011.1| - 0.0036 17.0 1.5 0.53 10.1 0.2 2.1 2 0 0 2 2 2 2 InsA N-terminal domain NMD3 PF04981.13 gi|433590515|ref|YP_007280011.1| - 0.0091 15.5 0.2 0.0091 15.5 0.2 1.0 1 0 0 1 1 1 1 NMD3 family Zn_Tnp_IS1595 PF12760.7 gi|433590515|ref|YP_007280011.1| - 0.01 15.8 0.2 0.24 11.4 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|433590515|ref|YP_007280011.1| - 0.026 14.2 0.2 0.032 13.9 0.2 1.2 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc-ribbons_6 PF07191.12 gi|433590515|ref|YP_007280011.1| - 0.03 14.3 2.1 0.076 13.0 2.1 1.7 1 1 0 1 1 1 0 zinc-ribbons Lar_restr_allev PF14354.6 gi|433590515|ref|YP_007280011.1| - 0.032 14.6 0.2 0.04 14.3 0.2 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar RNHCP PF12647.7 gi|433590515|ref|YP_007280011.1| - 0.034 14.1 0.5 0.037 14.0 0.5 1.1 1 0 0 1 1 1 0 RNHCP domain zf-CHY PF05495.12 gi|433590515|ref|YP_007280011.1| - 0.034 14.6 3.8 0.053 14.0 0.8 1.9 1 1 1 2 2 2 0 CHY zinc finger zf-RING_7 PF02591.15 gi|433590515|ref|YP_007280011.1| - 0.041 14.1 0.9 0.66 10.2 0.0 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF1610 PF07754.11 gi|433590515|ref|YP_007280011.1| - 0.043 13.8 3.6 1.1 9.3 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf_Rg PF17915.1 gi|433590515|ref|YP_007280011.1| - 0.045 13.2 0.2 4.7 6.7 0.1 2.2 2 0 0 2 2 2 0 Reverse gyrase zinc finger DZR PF12773.7 gi|433590515|ref|YP_007280011.1| - 0.051 13.6 2.7 0.09 12.8 2.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|433590515|ref|YP_007280011.1| - 0.052 13.0 1.9 0.71 9.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|433590515|ref|YP_007280011.1| - 0.1 12.5 2.4 3.9 7.4 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2614 PF11023.8 gi|433590515|ref|YP_007280011.1| - 0.36 10.9 0.8 3.8 7.6 0.1 2.0 1 1 0 2 2 2 0 Zinc-ribbon containing domain Rubredoxin PF00301.20 gi|433590515|ref|YP_007280011.1| - 1 9.4 5.4 0.75 9.9 0.4 2.2 1 1 1 2 2 2 0 Rubredoxin zf-TFIIB PF13453.6 gi|433590515|ref|YP_007280011.1| - 1.8 7.9 6.0 0.95 8.8 0.3 2.3 1 1 1 2 2 2 0 Transcription factor zinc-finger UPF0058 PF01893.16 gi|433590516|ref|YP_007280012.1| - 4.6e-19 68.5 0.1 5.2e-19 68.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 NinB PF05772.12 gi|433590516|ref|YP_007280012.1| - 0.026 14.4 0.0 0.027 14.3 0.0 1.1 1 0 0 1 1 1 0 NinB protein DUF555 PF04475.12 gi|433590517|ref|YP_007280013.1| - 1.1e-37 128.4 0.1 1.5e-37 128.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) CNDH2_C PF16858.5 gi|433590517|ref|YP_007280013.1| - 0.025 14.5 0.4 0.026 14.4 0.4 1.0 1 0 0 1 1 1 0 Condensin II complex subunit CAP-H2 or CNDH2, C-term Cwf_Cwc_15 PF04889.12 gi|433590517|ref|YP_007280013.1| - 0.064 13.0 4.7 0.073 12.8 4.7 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein HhH-GPD PF00730.25 gi|433590518|ref|YP_007280014.1| - 1.1e-15 58.0 0.0 3.8e-15 56.3 0.0 1.8 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 gi|433590518|ref|YP_007280014.1| - 4e-07 30.1 0.0 1.6e-06 28.2 0.0 1.8 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain AlkA_N PF06029.11 gi|433590518|ref|YP_007280014.1| - 0.051 13.8 0.1 0.25 11.6 0.1 2.0 2 0 0 2 2 2 0 AlkA N-terminal domain DUF3784 PF12650.7 gi|433590519|ref|YP_007280015.1| - 3e-09 36.9 0.3 3.8e-09 36.6 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) DUF2530 PF10745.9 gi|433590519|ref|YP_007280015.1| - 0.53 10.6 6.6 0.59 10.4 1.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) DUF2371 PF10177.9 gi|433590519|ref|YP_007280015.1| - 2.7 8.2 4.3 1.8 8.7 0.0 2.0 1 1 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) Acylphosphatase PF00708.18 gi|433590520|ref|YP_007280016.1| - 4.7e-26 91.0 0.0 5.2e-26 90.9 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Carb_kinase PF01256.17 gi|433590523|ref|YP_007280019.1| - 7.6e-42 143.5 2.3 1.6e-41 142.4 2.3 1.5 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|433590523|ref|YP_007280019.1| - 1e-39 136.2 1.8 1.9e-39 135.3 1.8 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.12 gi|433590523|ref|YP_007280019.1| - 1.5e-07 31.1 0.1 2.7e-07 30.2 0.1 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase HK PF02110.15 gi|433590523|ref|YP_007280019.1| - 2e-07 30.6 0.1 4.4e-07 29.5 0.1 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MoaC PF01967.21 gi|433590524|ref|YP_007280020.1| - 2.5e-49 166.8 0.9 2.9e-49 166.6 0.9 1.0 1 0 0 1 1 1 1 MoaC family CARDB PF07705.11 gi|433590525|ref|YP_007280021.1| - 1.5e-09 38.0 2.2 0.013 15.7 0.1 3.3 3 0 0 3 3 3 3 CARDB Transglut_C PF00927.22 gi|433590525|ref|YP_007280021.1| - 4.6e-06 26.7 0.0 0.0014 18.7 0.0 2.4 2 0 0 2 2 2 2 Transglutaminase family, C-terminal ig like domain Big_3_5 PF16640.5 gi|433590525|ref|YP_007280021.1| - 0.0024 18.0 11.2 0.0087 16.2 0.6 3.3 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 3) DUF11 PF01345.18 gi|433590525|ref|YP_007280021.1| - 0.016 15.5 10.5 0.14 12.5 2.8 3.8 2 1 0 2 2 2 0 Domain of unknown function DUF11 BIV_Env PF05858.12 gi|433590525|ref|YP_007280021.1| - 0.21 9.8 0.0 0.29 9.3 0.0 1.1 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) adh_short_C2 PF13561.6 gi|433590526|ref|YP_007280022.1| - 5.3e-65 219.3 2.6 6e-65 219.1 2.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433590526|ref|YP_007280022.1| - 1.6e-57 194.1 0.9 2e-57 193.9 0.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433590526|ref|YP_007280022.1| - 6.4e-23 81.6 0.1 8.3e-23 81.2 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433590526|ref|YP_007280022.1| - 0.0091 15.5 0.3 0.013 15.0 0.1 1.4 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|433590526|ref|YP_007280022.1| - 0.095 12.1 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Abhydrolase_1 PF00561.20 gi|433590527|ref|YP_007280023.1| - 8e-23 81.4 0.0 1.4e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.13 gi|433590527|ref|YP_007280023.1| - 6.1e-15 55.3 0.0 9.9e-15 54.6 0.0 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HHH_5 PF14520.6 gi|433590527|ref|YP_007280023.1| - 4e-13 49.8 0.1 1.3e-12 48.1 0.1 2.0 2 0 0 2 2 1 1 Helix-hairpin-helix domain Hydrolase_4 PF12146.8 gi|433590527|ref|YP_007280023.1| - 5.7e-10 38.9 0.0 5e-06 26.0 0.0 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DUF3141 PF11339.8 gi|433590527|ref|YP_007280023.1| - 2.3e-07 29.7 0.0 1.3e-06 27.2 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DUF4332 PF14229.6 gi|433590527|ref|YP_007280023.1| - 7.6e-06 26.2 0.3 0.002 18.4 0.3 3.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4332) DLH PF01738.18 gi|433590527|ref|YP_007280023.1| - 7e-05 22.5 0.0 0.004 16.8 0.0 2.4 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.7 gi|433590527|ref|YP_007280023.1| - 0.00034 21.3 0.1 0.0021 18.7 0.0 2.2 2 1 1 3 3 3 1 Alpha/beta hydrolase family PHB_depo_C PF06850.11 gi|433590527|ref|YP_007280023.1| - 0.0033 16.9 0.0 0.007 15.8 0.0 1.6 1 0 0 1 1 1 1 PHB de-polymerase C-terminus HTH_Tnp_ISL3 PF13542.6 gi|433590527|ref|YP_007280023.1| - 0.012 15.0 0.0 0.026 13.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Cdd1 PF11731.8 gi|433590527|ref|YP_007280023.1| - 0.016 15.4 0.0 0.042 14.1 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus HTH_28 PF13518.6 gi|433590527|ref|YP_007280023.1| - 0.018 15.1 0.0 0.046 13.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Abhydrolase_5 PF12695.7 gi|433590527|ref|YP_007280023.1| - 0.023 14.5 0.0 0.95 9.2 0.0 2.4 2 1 0 2 2 2 0 Alpha/beta hydrolase family DUF2048 PF09752.9 gi|433590527|ref|YP_007280023.1| - 0.036 13.2 0.1 0.15 11.1 0.0 1.8 2 0 0 2 2 2 0 Abhydrolase domain containing 18 Homez PF11569.8 gi|433590527|ref|YP_007280023.1| - 0.077 12.5 0.0 3.1 7.3 0.0 2.4 2 0 0 2 2 2 0 Homeodomain leucine-zipper encoding, Homez FSH1 PF03959.13 gi|433590527|ref|YP_007280023.1| - 0.086 12.5 0.0 6.2 6.4 0.0 2.2 2 0 0 2 2 2 0 Serine hydrolase (FSH1) TfoX_C PF04994.13 gi|433590527|ref|YP_007280023.1| - 0.15 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 TfoX C-terminal domain PGAP1 PF07819.13 gi|433590527|ref|YP_007280023.1| - 0.21 11.3 0.0 0.36 10.5 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein PHA_synth_III_E PF09712.10 gi|433590528|ref|YP_007280024.1| - 1.8e-07 30.6 8.0 3.4e-05 23.1 0.1 2.0 1 1 1 2 2 2 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) FliD_C PF07195.12 gi|433590528|ref|YP_007280024.1| - 0.0052 16.2 0.1 0.013 14.9 0.1 1.6 1 1 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus Phasin PF05597.11 gi|433590528|ref|YP_007280024.1| - 0.023 14.7 3.7 0.048 13.7 2.3 2.2 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) 5_nucleotid_C PF02872.18 gi|433590528|ref|YP_007280024.1| - 0.1 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 5'-nucleotidase, C-terminal domain Mt_ATP-synt_D PF05873.12 gi|433590528|ref|YP_007280024.1| - 0.13 12.2 0.7 0.33 10.8 0.5 1.9 1 1 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) Mating_N PF12731.7 gi|433590528|ref|YP_007280024.1| - 0.16 12.1 3.4 0.67 10.1 0.3 3.0 2 2 1 3 3 3 0 Mating-type protein beta 1 DUF16 PF01519.16 gi|433590528|ref|YP_007280024.1| - 0.24 11.9 2.3 4.3 7.9 0.0 2.5 1 1 0 2 2 2 0 Protein of unknown function DUF16 ORC4_C PF14629.6 gi|433590528|ref|YP_007280024.1| - 0.3 10.4 2.1 2.1 7.7 1.3 2.3 1 1 0 1 1 1 0 Origin recognition complex (ORC) subunit 4 C-terminus Spore_III_AB PF09548.10 gi|433590528|ref|YP_007280024.1| - 0.62 10.2 5.3 10 6.2 0.3 2.4 1 1 1 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) DUF4795 PF16043.5 gi|433590529|ref|YP_007280025.1| - 0.011 15.3 1.9 0.011 15.3 1.9 1.6 1 1 0 2 2 2 0 Domain of unknown function (DUF4795) DUF1664 PF07889.12 gi|433590529|ref|YP_007280025.1| - 0.017 15.2 1.3 0.063 13.3 0.3 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) Apolipoprotein PF01442.18 gi|433590529|ref|YP_007280025.1| - 0.023 14.6 11.8 0.2 11.5 1.3 2.3 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain SufE PF02657.15 gi|433590529|ref|YP_007280025.1| - 0.032 14.1 0.1 0.045 13.6 0.1 1.3 1 0 0 1 1 1 0 Fe-S metabolism associated domain Cep57_MT_bd PF06657.13 gi|433590529|ref|YP_007280025.1| - 0.034 14.6 0.2 9 6.8 0.0 2.7 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Phasin_2 PF09361.10 gi|433590529|ref|YP_007280025.1| - 0.21 11.9 20.9 3.4 8.0 10.9 2.6 1 1 2 3 3 3 0 Phasin protein DUF5344 PF17279.2 gi|433590529|ref|YP_007280025.1| - 0.33 11.6 5.5 0.26 11.9 2.3 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5344) CAP_N PF01213.19 gi|433590529|ref|YP_007280025.1| - 6.4 6.2 8.1 27 4.1 8.1 1.9 1 1 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal MazE_antitoxin PF04014.18 gi|433590530|ref|YP_007280026.1| - 0.092 12.7 0.6 0.14 12.1 0.6 1.2 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin MaoC_dehydratas PF01575.19 gi|433590531|ref|YP_007280027.1| - 1.1e-22 79.9 0.0 1.9e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|433590531|ref|YP_007280027.1| - 1.1e-06 28.8 0.0 4.3e-06 26.9 0.0 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase AOC_like PF18678.1 gi|433590531|ref|YP_007280027.1| - 0.023 14.3 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Allene oxide cyclase barrel like domain PGM_PMM_I PF02878.16 gi|433590532|ref|YP_007280028.1| - 2.8e-30 104.9 0.2 2.4e-29 101.8 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|433590532|ref|YP_007280028.1| - 1.8e-20 73.5 1.5 4.1e-20 72.3 0.2 2.4 2 1 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|433590532|ref|YP_007280028.1| - 6.9e-11 42.2 0.0 3.3e-10 40.0 0.0 2.2 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|433590532|ref|YP_007280028.1| - 0.00084 19.5 0.0 0.0023 18.1 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III dCMP_cyt_deam_1 PF00383.23 gi|433590533|ref|YP_007280029.1| - 2.2e-16 59.6 0.2 2.6e-16 59.3 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|433590533|ref|YP_007280029.1| - 3.5e-11 43.5 0.5 4.7e-11 43.0 0.5 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Fer2_4 PF13510.6 gi|433590533|ref|YP_007280029.1| - 0.078 13.0 1.0 0.13 12.3 0.3 1.7 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain DUF488 PF04343.13 gi|433590534|ref|YP_007280030.1| - 2.8e-09 37.6 0.9 1.1e-08 35.7 0.8 1.9 1 1 0 1 1 1 1 Protein of unknown function, DUF488 PNP_UDP_1 PF01048.20 gi|433590535|ref|YP_007280031.1| - 4.2e-48 163.6 1.9 5.3e-48 163.3 1.9 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DAO_C PF16901.5 gi|433590535|ref|YP_007280031.1| - 0.027 14.4 0.1 0.045 13.6 0.1 1.3 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase MS_channel PF00924.18 gi|433590536|ref|YP_007280032.1| - 6.2e-17 61.8 3.0 6.2e-17 61.8 3.0 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|433590536|ref|YP_007280032.1| - 9.2e-07 28.7 1.6 1.1e-05 25.3 0.2 3.5 3 1 0 3 3 3 2 Conserved TM helix DisA_N PF02457.16 gi|433590537|ref|YP_007280033.1| - 3.4e-21 75.0 0.0 5.7e-21 74.3 0.0 1.4 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding TFIIB PF00382.19 gi|433590539|ref|YP_007280035.1| - 3.2e-06 27.1 0.1 6.4e-06 26.1 0.1 1.5 1 1 0 1 1 1 1 Transcription factor TFIIB repeat Sigma70_r4 PF04545.16 gi|433590539|ref|YP_007280035.1| - 0.058 12.9 0.0 3 7.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 CTP_transf_like PF01467.26 gi|433590540|ref|YP_007280036.1| - 5.1e-13 49.4 0.0 6.1e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|433590540|ref|YP_007280036.1| - 0.0029 17.5 0.0 0.02 14.8 0.0 2.0 2 0 0 2 2 2 1 FAD synthetase Nbl1_Borealin_N PF10444.9 gi|433590540|ref|YP_007280036.1| - 0.024 14.3 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal PTA_PTB PF01515.19 gi|433590541|ref|YP_007280037.1| - 3.2e-93 312.5 0.0 4.5e-93 312.1 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|433590541|ref|YP_007280037.1| - 7.1e-30 104.1 0.0 2.4e-27 95.9 0.0 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|433590541|ref|YP_007280037.1| - 4.8e-21 75.2 0.8 1.3e-20 73.8 0.8 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain HTH_31 PF13560.6 gi|433590541|ref|YP_007280037.1| - 0.017 15.5 0.0 0.052 13.9 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain RHH_1 PF01402.21 gi|433590541|ref|YP_007280037.1| - 7.1 6.7 6.1 1.2 9.1 0.1 2.8 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family PQQ_3 PF13570.6 gi|433590542|ref|YP_007280038.1| - 3.2e-39 132.4 37.0 4.5e-09 36.5 1.5 9.1 8 1 0 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|433590542|ref|YP_007280038.1| - 4.2e-32 108.6 21.3 1.5e-06 27.8 0.0 8.0 8 1 0 8 8 8 6 PQQ enzyme repeat PQQ_2 PF13360.6 gi|433590542|ref|YP_007280038.1| - 4.7e-32 111.5 8.6 1.9e-11 44.0 0.2 3.3 1 1 1 2 2 2 2 PQQ-like domain TAT_signal PF10518.9 gi|433590542|ref|YP_007280038.1| - 0.11 12.4 2.4 0.48 10.4 2.4 2.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence WD40 PF00400.32 gi|433590542|ref|YP_007280038.1| - 8.5 7.4 7.8 21 6.2 0.2 4.7 4 0 0 4 4 4 0 WD domain, G-beta repeat Ribosomal_S8e PF01201.22 gi|433590543|ref|YP_007280039.1| - 9.1e-33 113.3 3.6 1e-32 113.1 3.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e PhoU PF01895.19 gi|433590544|ref|YP_007280040.1| - 3.1e-19 69.2 8.5 9.7e-17 61.2 2.6 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|433590544|ref|YP_007280040.1| - 3.3e-10 39.6 0.1 1e-09 38.1 0.0 1.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Alanine_zipper PF11839.8 gi|433590544|ref|YP_007280040.1| - 0.95 9.9 4.0 6.7 7.2 0.3 2.9 2 1 0 2 2 2 0 Alanine-zipper, major outer membrane lipoprotein PP_kinase_C_1 PF17941.1 gi|433590546|ref|YP_007280042.1| - 2.1e-71 238.8 0.5 4.8e-71 237.7 0.2 1.7 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 gi|433590546|ref|YP_007280042.1| - 2.5e-68 228.9 0.0 2.2e-66 222.6 0.0 2.3 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 gi|433590546|ref|YP_007280042.1| - 2.5e-64 216.6 3.3 4.4e-64 215.8 3.3 1.4 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|433590546|ref|YP_007280042.1| - 1.2e-33 115.6 0.0 3.2e-33 114.3 0.0 1.8 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|433590546|ref|YP_007280042.1| - 6.6e-14 51.9 0.0 1.6e-06 28.0 0.1 2.5 2 0 0 2 2 2 2 PLD-like domain MR_MLE_C PF13378.6 gi|433590546|ref|YP_007280042.1| - 0.041 13.4 0.3 0.041 13.4 0.3 1.8 2 0 0 2 2 2 0 Enolase C-terminal domain-like Metallophos PF00149.28 gi|433590547|ref|YP_007280043.1| - 4.8e-11 43.5 0.0 6.1e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|433590547|ref|YP_007280043.1| - 5.6e-08 33.1 0.0 8.3e-08 32.6 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain RibD_C PF01872.17 gi|433590548|ref|YP_007280044.1| - 1e-50 172.4 0.1 1.1e-50 172.2 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain ECH_1 PF00378.20 gi|433590549|ref|YP_007280045.1| - 3.6e-64 216.5 0.1 4e-64 216.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|433590549|ref|YP_007280045.1| - 1.7e-30 106.6 0.3 3e-30 105.9 0.3 1.4 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SDH_sah PF01972.16 gi|433590549|ref|YP_007280045.1| - 0.00069 18.7 0.0 0.001 18.1 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase PMSR PF01625.21 gi|433590550|ref|YP_007280046.1| - 2.2e-65 219.5 1.0 2.6e-65 219.3 1.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DNA_methylase PF00145.17 gi|433590552|ref|YP_007280048.1| - 2.1e-53 181.8 0.0 4.2e-53 180.8 0.0 1.5 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase zf-HC2 PF13490.6 gi|433590553|ref|YP_007280049.1| - 0.12 12.7 0.0 1.1 9.6 0.0 2.8 1 0 0 1 1 1 0 Putative zinc-finger Sugarporin_N PF11471.8 gi|433590553|ref|YP_007280049.1| - 0.12 12.3 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension DAO PF01266.24 gi|433590554|ref|YP_007280050.1| - 5.1e-54 184.2 10.4 5.8e-54 184.0 10.4 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|433590554|ref|YP_007280050.1| - 1.1e-10 41.3 4.5 2.5e-10 40.1 4.5 1.5 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|433590554|ref|YP_007280050.1| - 1e-07 31.4 7.2 1.4e-07 31.0 7.2 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|433590554|ref|YP_007280050.1| - 1e-06 28.2 0.6 4.7e-05 22.8 0.2 2.1 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|433590554|ref|YP_007280050.1| - 3.1e-06 26.8 6.0 6.6e-06 25.7 6.0 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|433590554|ref|YP_007280050.1| - 2.3e-05 24.8 0.5 0.00075 20.0 0.7 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|433590554|ref|YP_007280050.1| - 6.6e-05 23.1 1.6 0.00036 20.7 1.5 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|433590554|ref|YP_007280050.1| - 0.00033 21.1 0.0 0.00085 19.7 0.0 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|433590554|ref|YP_007280050.1| - 0.00069 19.5 0.2 0.0014 18.6 0.2 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|433590554|ref|YP_007280050.1| - 0.0012 17.6 0.4 0.094 11.4 0.5 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|433590554|ref|YP_007280050.1| - 0.0027 17.0 0.1 0.006 15.9 0.1 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|433590554|ref|YP_007280050.1| - 0.0047 16.6 0.5 0.0084 15.8 0.5 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|433590554|ref|YP_007280050.1| - 0.026 13.6 3.2 0.11 11.6 1.2 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A TrkA_N PF02254.18 gi|433590554|ref|YP_007280050.1| - 0.032 14.5 0.2 0.11 12.8 0.2 1.8 2 0 0 2 2 1 0 TrkA-N domain PALP PF00291.25 gi|433590554|ref|YP_007280050.1| - 0.046 13.1 7.4 0.019 14.4 4.0 1.9 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme Sacchrp_dh_NADP PF03435.18 gi|433590554|ref|YP_007280050.1| - 0.052 13.8 0.5 0.14 12.5 0.5 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Thi4 PF01946.17 gi|433590554|ref|YP_007280050.1| - 0.064 12.5 0.1 0.16 11.2 0.1 1.7 1 0 0 1 1 1 0 Thi4 family K_oxygenase PF13434.6 gi|433590554|ref|YP_007280050.1| - 0.12 11.5 0.2 0.31 10.2 0.1 1.6 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Shikimate_DH PF01488.20 gi|433590554|ref|YP_007280050.1| - 0.2 11.7 0.1 0.36 10.9 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.12 gi|433590554|ref|YP_007280050.1| - 0.24 10.4 3.2 0.58 9.1 0.6 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|433590554|ref|YP_007280050.1| - 0.26 11.3 2.3 0.55 10.2 0.7 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|433590554|ref|YP_007280050.1| - 0.35 9.7 1.1 2.1 7.1 0.5 2.0 2 0 0 2 2 2 0 Tryptophan halogenase HTH_20 PF12840.7 gi|433590555|ref|YP_007280051.1| - 3.9e-07 30.0 0.3 5.7e-07 29.5 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433590555|ref|YP_007280051.1| - 4.9e-06 26.2 0.0 7.4e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|433590555|ref|YP_007280051.1| - 5.5e-05 23.0 0.0 7.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|433590555|ref|YP_007280051.1| - 0.00058 19.7 0.0 0.00086 19.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433590555|ref|YP_007280051.1| - 0.044 13.7 0.1 0.067 13.1 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.15 gi|433590555|ref|YP_007280051.1| - 0.091 12.9 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase CobA_CobO_BtuR PF02572.15 gi|433590556|ref|YP_007280052.1| - 7.6e-51 172.8 0.0 9.3e-51 172.5 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.23 gi|433590556|ref|YP_007280052.1| - 0.099 12.7 0.0 0.15 12.1 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain HTH_10 PF04967.12 gi|433590557|ref|YP_007280053.1| - 4.8e-16 58.3 0.0 7.5e-16 57.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|433590557|ref|YP_007280053.1| - 7.1e-14 52.0 2.7 8.9e-14 51.6 2.7 1.1 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|433590557|ref|YP_007280053.1| - 4.6e-07 29.3 0.3 1e-06 28.2 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|433590557|ref|YP_007280053.1| - 0.0028 17.7 0.1 0.006 16.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|433590557|ref|YP_007280053.1| - 0.015 15.2 0.1 0.032 14.1 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|433590557|ref|YP_007280053.1| - 0.036 13.8 0.1 0.47 10.2 0.1 2.3 1 1 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|433590557|ref|YP_007280053.1| - 0.047 13.6 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|433590557|ref|YP_007280053.1| - 0.075 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain Get5_bdg PF16843.5 gi|433590558|ref|YP_007280054.1| - 0.044 13.3 0.1 0.1 12.1 0.1 1.6 1 0 0 1 1 1 0 Binding domain to Get4 on Get5, Golgi to ER traffic protein ABC_tran PF00005.27 gi|433590559|ref|YP_007280055.1| - 1.3e-27 97.0 0.0 2.3e-27 96.2 0.0 1.4 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|433590559|ref|YP_007280055.1| - 3.8e-11 43.4 0.1 2.1e-06 27.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|433590559|ref|YP_007280055.1| - 0.0006 18.6 0.1 0.19 10.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|433590559|ref|YP_007280055.1| - 0.0025 17.6 0.0 0.38 10.4 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|433590559|ref|YP_007280055.1| - 0.0065 16.9 0.2 0.099 13.1 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|433590559|ref|YP_007280055.1| - 0.0096 15.7 0.0 0.088 12.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|433590559|ref|YP_007280055.1| - 0.013 16.0 0.4 0.02 15.4 0.3 1.4 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|433590559|ref|YP_007280055.1| - 0.061 13.2 0.0 0.2 11.6 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 gi|433590559|ref|YP_007280055.1| - 0.079 13.3 0.1 0.23 11.8 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|433590559|ref|YP_007280055.1| - 0.11 12.7 0.3 0.45 10.7 0.3 2.2 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|433590559|ref|YP_007280055.1| - 0.14 12.4 0.1 2.8 8.3 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit T2SSE PF00437.20 gi|433590559|ref|YP_007280055.1| - 0.15 11.1 0.6 0.69 8.9 0.5 1.9 1 1 0 1 1 1 0 Type II/IV secretion system protein SMC_N PF02463.19 gi|433590559|ref|YP_007280055.1| - 0.16 11.4 0.0 5.1 6.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_7 PF12775.7 gi|433590559|ref|YP_007280055.1| - 0.21 11.1 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region HTH_20 PF12840.7 gi|433590561|ref|YP_007280057.1| - 1.7e-06 28.0 0.2 7.2e-06 26.0 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433590561|ref|YP_007280057.1| - 0.0043 16.9 0.0 0.01 15.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433590561|ref|YP_007280057.1| - 0.0095 15.8 0.3 0.019 14.8 0.3 1.5 1 0 0 1 1 1 1 MarR family TRAPPC9-Trs120 PF08626.11 gi|433590562|ref|YP_007280058.1| - 0.095 10.0 0.0 0.11 9.8 0.0 1.1 1 0 0 1 1 1 0 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit GATase_3 PF07685.14 gi|433590563|ref|YP_007280059.1| - 3.3e-37 128.0 0.0 5.4e-37 127.3 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|433590563|ref|YP_007280059.1| - 2.7e-22 79.2 0.0 4.8e-22 78.4 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|433590563|ref|YP_007280059.1| - 1.2e-18 67.7 0.0 6.3e-18 65.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF1611 PF07755.11 gi|433590563|ref|YP_007280059.1| - 0.077 12.3 0.0 0.77 9.0 0.1 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1611_C) P-loop domain MTH865 PF07747.11 gi|433590565|ref|YP_007280061.1| - 1.9e-28 98.0 0.1 2.2e-28 97.8 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family BAT PF15915.5 gi|433590566|ref|YP_007280062.1| - 8e-44 149.3 10.7 8e-44 149.3 10.7 3.5 4 1 0 4 4 4 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|433590566|ref|YP_007280062.1| - 3.1e-19 68.5 0.1 3.5e-18 65.1 0.0 2.8 3 0 0 3 3 3 1 HTH DNA binding domain GAF_2 PF13185.6 gi|433590566|ref|YP_007280062.1| - 1.8e-16 60.7 0.3 7.7e-16 58.6 0.3 2.2 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|433590566|ref|YP_007280062.1| - 1.1e-15 57.8 8.1 5.7e-15 55.5 2.1 3.7 3 0 0 3 3 3 1 PAS fold Sigma70_r4 PF04545.16 gi|433590566|ref|YP_007280062.1| - 0.0003 20.3 0.0 0.0012 18.3 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 GAF PF01590.26 gi|433590566|ref|YP_007280062.1| - 0.00033 21.3 0.0 0.00084 20.0 0.0 1.9 1 1 0 1 1 1 1 GAF domain Sigma70_r4_2 PF08281.12 gi|433590566|ref|YP_007280062.1| - 0.0005 19.7 0.0 0.0027 17.4 0.0 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 GAF_3 PF13492.6 gi|433590566|ref|YP_007280062.1| - 0.00071 19.9 0.0 0.0024 18.2 0.0 1.9 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.7 gi|433590566|ref|YP_007280062.1| - 0.0012 19.0 0.0 0.0033 17.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain Autoind_bind PF03472.15 gi|433590566|ref|YP_007280062.1| - 0.016 14.7 0.3 0.048 13.1 0.0 1.9 2 0 0 2 2 2 0 Autoinducer binding domain HTH_5 PF01022.20 gi|433590566|ref|YP_007280062.1| - 0.098 12.5 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Peptidase_M10 PF00413.24 gi|433590567|ref|YP_007280063.1| - 0.00057 19.8 0.0 0.00057 19.8 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.9 gi|433590567|ref|YP_007280063.1| - 0.0016 17.5 0.0 0.0023 16.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase M66 Astacin PF01400.24 gi|433590567|ref|YP_007280063.1| - 0.0055 16.3 0.1 0.02 14.5 0.2 1.7 2 0 0 2 2 2 1 Astacin (Peptidase family M12A) Metallopep PF12044.8 gi|433590567|ref|YP_007280063.1| - 0.0063 15.2 0.8 0.0087 14.7 0.8 1.1 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_5 PF13688.6 gi|433590567|ref|YP_007280063.1| - 0.031 14.4 0.8 0.047 13.9 0.8 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M43 PF05572.13 gi|433590567|ref|YP_007280063.1| - 0.064 13.2 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_3 PF13582.6 gi|433590567|ref|YP_007280063.1| - 0.069 13.7 0.5 0.11 13.1 0.5 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|433590567|ref|YP_007280063.1| - 0.13 11.9 0.1 0.25 10.9 0.1 1.5 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M54 PF07998.11 gi|433590567|ref|YP_007280063.1| - 0.16 11.9 0.3 0.28 11.2 0.3 1.3 1 0 0 1 1 1 0 Peptidase family M54 DUF4953 PF16313.5 gi|433590567|ref|YP_007280063.1| - 0.35 10.0 3.6 0.56 9.4 3.6 1.2 1 0 0 1 1 1 0 Met-zincin Peptidase_M57 PF12388.8 gi|433590567|ref|YP_007280063.1| - 0.52 9.9 2.2 0.86 9.2 2.2 1.2 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase HTH_24 PF13412.6 gi|433590568|ref|YP_007280064.1| - 1.4e-07 31.0 0.0 2.1e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433590568|ref|YP_007280064.1| - 0.0002 21.2 0.0 0.00028 20.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433590568|ref|YP_007280064.1| - 0.0064 16.4 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|433590568|ref|YP_007280064.1| - 0.013 15.6 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain RelB_N PF18506.1 gi|433590568|ref|YP_007280064.1| - 0.014 15.2 1.1 1.6 8.6 0.0 2.5 2 0 0 2 2 2 0 RelB Antitoxin alpha helical domain DUF2250 PF10007.9 gi|433590568|ref|YP_007280064.1| - 0.014 15.4 0.0 0.025 14.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.6 gi|433590568|ref|YP_007280064.1| - 0.016 15.2 0.0 0.02 14.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.19 gi|433590568|ref|YP_007280064.1| - 0.027 14.4 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|433590568|ref|YP_007280064.1| - 0.07 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Trehalose_PPase PF02358.16 gi|433590569|ref|YP_007280065.1| - 2.3e-40 138.2 0.0 2.7e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 gi|433590569|ref|YP_007280065.1| - 0.2 11.3 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Glyco_transf_20 PF00982.21 gi|433590570|ref|YP_007280066.1| - 2e-113 379.6 0.0 2.4e-113 379.4 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glyco_trans_1_4 PF13692.6 gi|433590570|ref|YP_007280066.1| - 0.005 17.3 0.1 0.014 15.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|433590570|ref|YP_007280066.1| - 0.2 11.2 0.0 0.41 10.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Peptidase_M24 PF00557.24 gi|433590571|ref|YP_007280067.1| - 1.4e-55 188.2 2.3 6.7e-55 186.0 2.3 1.8 1 1 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|433590571|ref|YP_007280067.1| - 1.7e-22 80.5 0.0 3.9e-22 79.3 0.0 1.6 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Cdc6_C PF09079.11 gi|433590572|ref|YP_007280068.1| - 5.8e-21 74.3 0.1 1.7e-20 72.8 0.1 1.9 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|433590572|ref|YP_007280068.1| - 2.6e-15 56.9 0.1 9.4e-15 55.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433590572|ref|YP_007280068.1| - 4.5e-09 36.9 4.0 4.7e-09 36.9 0.7 2.6 2 2 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|433590572|ref|YP_007280068.1| - 3e-05 23.8 0.0 5.7e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|433590572|ref|YP_007280068.1| - 3.7e-05 23.7 0.0 9.8e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|433590572|ref|YP_007280068.1| - 0.00011 22.2 0.0 0.00019 21.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|433590572|ref|YP_007280068.1| - 0.00014 22.3 0.2 0.00073 20.0 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|433590572|ref|YP_007280068.1| - 0.0003 20.2 0.0 0.00065 19.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein Sigma54_activ_2 PF14532.6 gi|433590572|ref|YP_007280068.1| - 0.00042 20.4 0.0 0.0021 18.2 0.0 2.0 1 1 1 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|433590572|ref|YP_007280068.1| - 0.0034 16.6 0.0 0.0056 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|433590572|ref|YP_007280068.1| - 0.004 17.3 0.0 0.0066 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF87 PF01935.17 gi|433590572|ref|YP_007280068.1| - 0.0061 16.7 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain Mg_chelatase PF01078.21 gi|433590572|ref|YP_007280068.1| - 0.013 14.9 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|433590572|ref|YP_007280068.1| - 0.018 14.8 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|433590572|ref|YP_007280068.1| - 0.02 14.7 0.1 5.2 6.8 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|433590572|ref|YP_007280068.1| - 0.02 15.2 0.0 0.043 14.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.7 gi|433590572|ref|YP_007280068.1| - 0.022 13.7 0.0 0.16 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain DUF2075 PF09848.9 gi|433590572|ref|YP_007280068.1| - 0.032 13.5 0.0 0.043 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|433590572|ref|YP_007280068.1| - 0.04 13.4 1.0 3.1 7.2 0.0 2.6 2 1 1 3 3 3 0 PhoH-like protein FtsK_SpoIIIE PF01580.18 gi|433590572|ref|YP_007280068.1| - 0.042 13.2 0.0 0.086 12.2 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_18 PF13238.6 gi|433590572|ref|YP_007280068.1| - 0.072 13.6 0.0 0.16 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|433590572|ref|YP_007280068.1| - 0.084 13.2 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_assoc_2 PF16193.5 gi|433590572|ref|YP_007280068.1| - 0.095 13.1 0.2 0.65 10.4 0.2 2.2 1 1 1 2 2 2 0 AAA C-terminal domain IstB_IS21 PF01695.17 gi|433590572|ref|YP_007280068.1| - 0.13 12.0 0.2 0.57 9.9 0.1 2.0 1 1 1 2 2 2 0 IstB-like ATP binding protein KAP_NTPase PF07693.14 gi|433590572|ref|YP_007280068.1| - 0.14 11.4 0.3 6.7 5.9 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain AAA_32 PF13654.6 gi|433590572|ref|YP_007280068.1| - 0.14 10.9 0.5 8.8 5.0 0.4 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|433590572|ref|YP_007280068.1| - 0.19 11.8 0.0 0.35 11.0 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase zinc_ribbon_4 PF13717.6 gi|433590573|ref|YP_007280069.1| - 0.0021 17.9 2.0 1.1 9.3 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433590573|ref|YP_007280069.1| - 0.0033 17.5 1.7 0.9 9.7 0.4 2.1 2 0 0 2 2 2 2 Zinc ribbon domain DZR PF12773.7 gi|433590573|ref|YP_007280069.1| - 0.0033 17.4 0.2 0.0045 17.0 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|433590573|ref|YP_007280069.1| - 0.0053 16.1 1.5 1.7 8.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|433590573|ref|YP_007280069.1| - 0.014 15.6 0.2 5.1 7.4 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Nudix_N_2 PF14803.6 gi|433590573|ref|YP_007280069.1| - 0.023 14.6 2.4 2 8.4 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_5 PF13719.6 gi|433590573|ref|YP_007280069.1| - 0.027 14.2 1.2 3.3 7.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|433590573|ref|YP_007280069.1| - 0.029 14.1 1.5 0.21 11.3 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|433590573|ref|YP_007280069.1| - 0.03 14.0 0.8 0.098 12.4 0.1 1.9 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_15 PF17032.5 gi|433590573|ref|YP_007280069.1| - 0.055 14.2 0.0 0.065 14.0 0.0 1.1 1 0 0 1 1 1 0 zinc-ribbon family UPF0547 PF10571.9 gi|433590573|ref|YP_007280069.1| - 0.055 13.6 2.9 3.7 7.7 0.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DiS_P_DiS PF06750.13 gi|433590573|ref|YP_007280069.1| - 0.17 12.0 0.5 0.48 10.6 0.5 1.8 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain CpXC PF14353.6 gi|433590573|ref|YP_007280069.1| - 0.18 11.8 1.0 1.9 8.6 1.2 1.9 1 1 1 2 2 2 0 CpXC protein Rubredoxin_2 PF18073.1 gi|433590573|ref|YP_007280069.1| - 0.69 9.7 4.7 1.2 8.9 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Iron_transport PF10634.9 gi|433590574|ref|YP_007280070.1| - 0.00028 21.1 0.0 0.0027 17.9 0.0 2.2 2 0 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.9 gi|433590574|ref|YP_007280070.1| - 0.54 10.2 3.7 1.2 9.1 3.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SCO1-SenC PF02630.14 gi|433590575|ref|YP_007280071.1| - 1.2e-14 54.4 0.1 2.7e-14 53.2 0.1 1.6 1 1 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.21 gi|433590575|ref|YP_007280071.1| - 0.002 18.1 0.0 0.0075 16.2 0.0 2.0 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|433590575|ref|YP_007280071.1| - 0.0069 16.1 0.0 0.067 12.9 0.0 2.0 2 0 0 2 2 2 1 Redoxin Redoxin PF08534.10 gi|433590576|ref|YP_007280072.1| - 4.1e-13 49.3 0.0 4.7e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|433590576|ref|YP_007280072.1| - 4.5e-10 39.5 0.0 5.8e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.20 gi|433590576|ref|YP_007280072.1| - 5.3e-09 36.0 0.0 3.3e-07 30.2 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|433590576|ref|YP_007280072.1| - 7.7e-07 29.5 0.0 1.3e-06 28.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|433590576|ref|YP_007280072.1| - 8.2e-07 29.3 0.0 1.7e-06 28.3 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_7 PF13899.6 gi|433590576|ref|YP_007280072.1| - 0.04 14.1 0.0 0.062 13.5 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like DsbD PF02683.15 gi|433590577|ref|YP_007280073.1| - 2.4e-12 47.2 18.5 3.7e-12 46.6 18.5 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Usp PF00582.26 gi|433590578|ref|YP_007280074.1| - 1.4e-34 119.6 3.6 1.6e-34 119.5 3.6 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.16 gi|433590578|ref|YP_007280074.1| - 0.042 14.6 0.1 0.052 14.3 0.1 1.3 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase BAT PF15915.5 gi|433590579|ref|YP_007280075.1| - 4.4e-44 150.1 14.7 4.4e-44 150.1 14.7 5.0 3 1 1 4 4 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|433590579|ref|YP_007280075.1| - 1e-18 66.9 0.0 2.5e-18 65.6 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|433590579|ref|YP_007280075.1| - 7.4e-15 55.5 13.8 5.4e-12 46.2 1.8 3.8 3 1 1 4 4 4 2 GAF domain PAS PF00989.25 gi|433590579|ref|YP_007280075.1| - 4e-14 52.6 0.0 4.3e-08 33.2 0.0 4.4 3 1 1 4 4 4 2 PAS fold PAS_4 PF08448.10 gi|433590579|ref|YP_007280075.1| - 5.6e-13 49.1 14.5 9.8e-06 25.8 0.8 5.4 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.7 gi|433590579|ref|YP_007280075.1| - 6e-13 48.5 0.2 0.00036 20.5 0.0 3.9 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|433590579|ref|YP_007280075.1| - 2.8e-10 40.3 0.0 7.3e-10 39.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold GAF PF01590.26 gi|433590579|ref|YP_007280075.1| - 4.8e-08 33.7 0.1 3.7e-05 24.4 0.0 3.0 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|433590579|ref|YP_007280075.1| - 6.8e-07 29.7 0.2 0.013 15.8 0.0 3.1 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.7 gi|433590579|ref|YP_007280075.1| - 1.1e-05 25.6 0.0 0.06 13.6 0.0 2.8 2 0 0 2 2 2 2 PAS domain Sigma70_r4 PF04545.16 gi|433590579|ref|YP_007280075.1| - 6.1e-05 22.5 0.1 0.00025 20.5 0.1 2.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|433590579|ref|YP_007280075.1| - 0.0029 17.3 0.1 0.043 13.5 0.1 2.6 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|433590579|ref|YP_007280075.1| - 0.013 15.4 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_ECF PF07638.11 gi|433590579|ref|YP_007280075.1| - 0.014 15.3 0.0 0.038 13.9 0.0 1.8 1 0 0 1 1 1 0 ECF sigma factor GerE PF00196.19 gi|433590579|ref|YP_007280075.1| - 0.019 14.5 0.0 0.054 13.0 0.0 1.8 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|433590579|ref|YP_007280075.1| - 0.053 13.1 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|433590579|ref|YP_007280075.1| - 0.075 13.0 0.3 0.26 11.3 0.0 2.0 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|433590580|ref|YP_007280076.1| - 1.4e-18 66.4 0.0 2.5e-18 65.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|433590580|ref|YP_007280076.1| - 6.5e-09 35.8 5.7 7.6e-09 35.6 4.5 1.7 1 1 1 2 2 2 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|433590580|ref|YP_007280076.1| - 1.1e-07 31.2 0.1 3e-07 29.9 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|433590580|ref|YP_007280076.1| - 1.6e-05 24.4 0.1 3.1e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433590580|ref|YP_007280076.1| - 2.7e-05 24.0 0.0 7.7e-05 22.5 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.22 gi|433590580|ref|YP_007280076.1| - 0.00019 21.4 0.0 0.00044 20.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|433590580|ref|YP_007280076.1| - 0.00074 19.1 0.3 0.0029 17.3 0.3 1.9 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|433590580|ref|YP_007280076.1| - 0.0034 17.3 0.1 0.0062 16.5 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|433590580|ref|YP_007280076.1| - 0.0038 17.0 0.3 0.0079 16.0 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_31 PF13560.6 gi|433590580|ref|YP_007280076.1| - 0.0039 17.5 1.1 0.076 13.4 0.2 2.8 2 1 0 2 2 2 1 Helix-turn-helix domain Phage_CI_repr PF07022.13 gi|433590580|ref|YP_007280076.1| - 0.008 16.2 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain Fe_dep_repress PF01325.19 gi|433590580|ref|YP_007280076.1| - 0.011 15.9 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|433590580|ref|YP_007280076.1| - 0.028 14.2 0.0 0.064 13.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain UPF0122 PF04297.14 gi|433590580|ref|YP_007280076.1| - 0.037 14.3 0.0 0.066 13.5 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_20 PF12840.7 gi|433590580|ref|YP_007280076.1| - 0.039 14.0 0.1 0.21 11.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|433590580|ref|YP_007280076.1| - 0.052 13.4 0.1 0.11 12.4 0.1 1.5 1 1 0 1 1 1 0 ECF sigma factor YdaS_antitoxin PF15943.5 gi|433590580|ref|YP_007280076.1| - 0.062 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT P22_Cro PF14549.6 gi|433590580|ref|YP_007280076.1| - 0.071 13.0 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro MarR PF01047.22 gi|433590580|ref|YP_007280076.1| - 0.089 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_50 PF18024.1 gi|433590580|ref|YP_007280076.1| - 0.097 12.3 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|433590580|ref|YP_007280076.1| - 0.11 12.5 0.2 0.53 10.3 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 gi|433590580|ref|YP_007280076.1| - 0.11 12.4 0.0 0.36 10.7 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_37 PF13744.6 gi|433590580|ref|YP_007280076.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433590580|ref|YP_007280076.1| - 0.12 12.3 0.0 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|433590580|ref|YP_007280076.1| - 0.16 11.8 0.1 0.63 9.8 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain MMR_HSR1_Xtn PF16897.5 gi|433590581|ref|YP_007280077.1| - 0.058 13.4 0.2 0.065 13.3 0.2 1.0 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain SIS PF01380.22 gi|433590582|ref|YP_007280078.1| - 5.2e-50 168.7 0.1 2.8e-24 85.4 1.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|433590582|ref|YP_007280078.1| - 7.7e-22 77.9 0.0 2.7e-21 76.2 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|433590582|ref|YP_007280078.1| - 1.5e-18 66.9 0.0 2.7e-18 66.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|433590582|ref|YP_007280078.1| - 0.012 14.5 0.0 0.019 13.9 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II Zn-ribbon_8 PF09723.10 gi|433590584|ref|YP_007280080.1| - 0.024 14.8 2.6 0.068 13.3 2.3 1.8 1 1 1 2 2 2 0 Zinc ribbon domain RecR PF02132.15 gi|433590584|ref|YP_007280080.1| - 0.032 13.8 0.9 0.29 10.7 0.0 2.0 2 0 0 2 2 2 0 RecR protein DUF3268 PF11672.8 gi|433590584|ref|YP_007280080.1| - 0.032 14.5 0.2 0.038 14.3 0.2 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain zf-LITAF-like PF10601.9 gi|433590584|ref|YP_007280080.1| - 0.043 14.1 3.1 0.68 10.2 0.2 2.1 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain Vps36-NZF-N PF16988.5 gi|433590584|ref|YP_007280080.1| - 0.055 12.9 0.2 0.055 12.9 0.2 1.6 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Zn_ribbon_SprT PF17283.2 gi|433590584|ref|YP_007280080.1| - 0.091 12.7 5.1 0.34 10.8 0.4 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|433590584|ref|YP_007280080.1| - 0.11 12.2 2.6 1.3 8.8 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|433590584|ref|YP_007280080.1| - 0.16 11.4 3.0 0.61 9.6 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 gi|433590584|ref|YP_007280080.1| - 0.33 11.0 0.1 0.33 11.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) PGM_PMM_I PF02878.16 gi|433590585|ref|YP_007280081.1| - 1.1e-36 125.6 0.1 1.9e-36 124.8 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|433590585|ref|YP_007280081.1| - 2e-21 76.3 0.0 5.3e-21 74.9 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|433590585|ref|YP_007280081.1| - 1e-19 71.0 0.1 2.5e-19 69.8 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|433590585|ref|YP_007280081.1| - 1.3e-11 44.5 0.5 1.3e-11 44.5 0.5 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PBP1_TM PF14812.6 gi|433590585|ref|YP_007280081.1| - 5 7.6 6.2 28 5.1 0.7 2.4 2 0 0 2 2 2 0 Transmembrane domain of transglycosylase PBP1 at N-terminal MarR_2 PF12802.7 gi|433590586|ref|YP_007280082.1| - 0.0001 22.1 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|433590586|ref|YP_007280082.1| - 0.00067 19.5 0.0 0.00098 19.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|433590586|ref|YP_007280082.1| - 0.013 15.4 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|433590586|ref|YP_007280082.1| - 0.026 14.6 0.0 0.04 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|433590586|ref|YP_007280082.1| - 0.027 14.1 0.1 0.041 13.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|433590586|ref|YP_007280082.1| - 0.045 13.3 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.10 gi|433590586|ref|YP_007280082.1| - 0.075 13.0 0.0 0.16 12.0 0.0 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_36 PF13730.6 gi|433590586|ref|YP_007280082.1| - 0.078 12.9 0.0 1.5 8.9 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain SNF PF00209.18 gi|433590587|ref|YP_007280083.1| - 4.1e-50 171.0 26.2 4.5e-26 91.6 7.1 2.1 1 1 0 2 2 2 2 Sodium:neurotransmitter symporter family DUF2919 PF11143.8 gi|433590587|ref|YP_007280083.1| - 0.38 11.1 4.6 0.29 11.4 0.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2919) Acetyltransf_6 PF13480.7 gi|433590588|ref|YP_007280084.1| - 2.5e-19 69.9 0.1 5.3e-19 68.8 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|433590588|ref|YP_007280084.1| - 0.00013 21.0 0.0 0.022 13.6 0.0 2.1 2 0 0 2 2 2 2 FemAB family Phosphodiest PF01663.22 gi|433590589|ref|YP_007280085.1| - 2.9e-40 139.0 0.0 8.7e-39 134.1 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DegT_DnrJ_EryC1 PF01041.17 gi|433590590|ref|YP_007280086.1| - 3.1e-15 56.3 0.0 1.5e-14 54.1 0.0 1.8 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|433590590|ref|YP_007280086.1| - 0.0017 17.6 0.0 0.0029 16.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DUF87 PF01935.17 gi|433590591|ref|YP_007280087.1| - 1.3e-10 41.8 0.0 1.3e-10 41.8 0.0 2.3 2 1 0 2 2 1 1 Helicase HerA, central domain CbiA PF01656.23 gi|433590591|ref|YP_007280087.1| - 9.6e-05 22.4 0.0 0.0005 20.1 0.0 2.0 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF853 PF05872.12 gi|433590591|ref|YP_007280087.1| - 0.0001 21.1 1.8 0.0024 16.5 0.0 2.6 3 0 0 3 3 3 1 Bacterial protein of unknown function (DUF853) ABC_tran_CTD PF16326.5 gi|433590591|ref|YP_007280087.1| - 0.00025 21.2 23.7 0.026 14.8 7.6 2.7 2 0 0 2 2 2 2 ABC transporter C-terminal domain CENP-F_leu_zip PF10473.9 gi|433590591|ref|YP_007280087.1| - 0.00044 20.3 21.8 0.019 15.0 21.8 2.5 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MscS_porin PF12795.7 gi|433590591|ref|YP_007280087.1| - 0.00053 19.6 20.0 0.00088 18.9 20.0 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain FlaC_arch PF05377.11 gi|433590591|ref|YP_007280087.1| - 0.00054 20.3 10.1 0.015 15.7 1.0 3.5 2 1 1 3 3 3 1 Flagella accessory protein C (FlaC) FPP PF05911.11 gi|433590591|ref|YP_007280087.1| - 0.00056 18.2 7.3 0.001 17.4 7.3 1.4 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil DUF4407 PF14362.6 gi|433590591|ref|YP_007280087.1| - 0.0022 17.4 12.1 0.0044 16.4 12.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) APS_kinase PF01583.20 gi|433590591|ref|YP_007280087.1| - 0.005 16.7 0.0 0.027 14.4 0.0 2.2 1 0 0 1 1 1 1 Adenylylsulphate kinase Fez1 PF06818.15 gi|433590591|ref|YP_007280087.1| - 0.012 16.1 18.7 0.034 14.6 5.2 2.4 1 1 1 2 2 2 0 Fez1 ATG16 PF08614.11 gi|433590591|ref|YP_007280087.1| - 0.014 15.6 10.7 0.014 15.6 10.7 2.5 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) AAA_31 PF13614.6 gi|433590591|ref|YP_007280087.1| - 0.016 15.1 0.2 0.14 12.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain TrmB PF01978.19 gi|433590591|ref|YP_007280087.1| - 0.017 15.0 0.7 0.098 12.6 0.1 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Phage_GP20 PF06810.11 gi|433590591|ref|YP_007280087.1| - 0.018 14.8 1.8 0.018 14.8 1.8 2.8 2 1 1 3 3 2 0 Phage minor structural protein GP20 YabA PF06156.13 gi|433590591|ref|YP_007280087.1| - 0.028 15.1 1.1 0.028 15.1 1.1 2.5 1 1 1 2 2 2 0 Initiation control protein YabA Cep57_CLD PF14073.6 gi|433590591|ref|YP_007280087.1| - 0.034 14.2 16.6 0.057 13.4 16.6 1.3 1 0 0 1 1 1 0 Centrosome localisation domain of Cep57 BRE1 PF08647.11 gi|433590591|ref|YP_007280087.1| - 0.035 14.2 9.4 1.1 9.4 3.8 2.4 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase DUF3584 PF12128.8 gi|433590591|ref|YP_007280087.1| - 0.047 11.2 14.0 0.067 10.7 14.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_16 PF13191.6 gi|433590591|ref|YP_007280087.1| - 0.049 14.0 0.0 0.049 14.0 0.0 3.1 2 1 0 2 2 1 0 AAA ATPase domain TPR_MLP1_2 PF07926.12 gi|433590591|ref|YP_007280087.1| - 0.05 13.7 17.4 0.12 12.5 17.4 1.7 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein AAA_10 PF12846.7 gi|433590591|ref|YP_007280087.1| - 0.051 12.5 0.9 0.98 8.3 0.0 2.8 2 1 0 3 3 3 0 AAA-like domain FliJ PF02050.16 gi|433590591|ref|YP_007280087.1| - 0.055 13.7 13.5 0.035 14.3 10.4 2.1 1 1 1 2 2 2 0 Flagellar FliJ protein AAA PF00004.29 gi|433590591|ref|YP_007280087.1| - 0.078 13.4 0.0 0.9 10.0 0.0 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TMF_TATA_bd PF12325.8 gi|433590591|ref|YP_007280087.1| - 0.096 12.9 18.7 0.086 13.1 7.3 2.7 1 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding TMF_DNA_bd PF12329.8 gi|433590591|ref|YP_007280087.1| - 0.15 12.1 11.9 1.5 8.9 1.5 2.7 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding ParA PF10609.9 gi|433590591|ref|YP_007280087.1| - 0.15 11.4 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase Spectrin PF00435.21 gi|433590591|ref|YP_007280087.1| - 0.16 12.5 12.9 0.15 12.5 11.1 2.0 1 1 0 1 1 1 0 Spectrin repeat Rrf2 PF02082.20 gi|433590591|ref|YP_007280087.1| - 0.17 12.2 0.2 2.3 8.6 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator FapA PF03961.13 gi|433590591|ref|YP_007280087.1| - 0.18 10.4 6.3 0.28 9.7 6.3 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF641 PF04859.12 gi|433590591|ref|YP_007280087.1| - 0.21 11.9 13.3 1.5 9.2 2.8 2.9 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) SlyX PF04102.12 gi|433590591|ref|YP_007280087.1| - 0.24 12.0 19.7 0.95 10.1 5.4 3.2 1 1 2 3 3 3 0 SlyX Prefoldin_2 PF01920.20 gi|433590591|ref|YP_007280087.1| - 0.25 11.3 18.3 0.58 10.1 6.5 2.8 2 1 0 2 2 2 0 Prefoldin subunit DUF4201 PF13870.6 gi|433590591|ref|YP_007280087.1| - 0.25 11.0 14.6 1.3 8.7 4.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) Exonuc_VII_L PF02601.15 gi|433590591|ref|YP_007280087.1| - 0.25 10.9 6.5 0.46 10.0 6.5 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit Spc7 PF08317.11 gi|433590591|ref|YP_007280087.1| - 0.29 10.0 20.7 1.4 7.7 19.7 2.2 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF4795 PF16043.5 gi|433590591|ref|YP_007280087.1| - 0.32 10.6 11.9 0.47 10.0 1.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) HIP1_clath_bdg PF16515.5 gi|433590591|ref|YP_007280087.1| - 0.5 11.0 20.6 4.5 8.0 6.4 2.7 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF745 PF05335.13 gi|433590591|ref|YP_007280087.1| - 0.58 9.9 7.9 1.2 8.8 7.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF745) IFT20 PF14931.6 gi|433590591|ref|YP_007280087.1| - 0.66 10.2 17.5 0.43 10.8 4.1 2.9 3 1 0 3 3 2 0 Intraflagellar transport complex B, subunit 20 Fib_alpha PF08702.10 gi|433590591|ref|YP_007280087.1| - 0.66 10.2 5.1 2.1 8.5 5.3 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family AAA_13 PF13166.6 gi|433590591|ref|YP_007280087.1| - 0.68 8.5 12.1 2.1 6.9 12.1 1.6 1 1 0 1 1 1 0 AAA domain Atg14 PF10186.9 gi|433590591|ref|YP_007280087.1| - 0.71 8.9 16.5 0.24 10.5 4.4 2.1 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 SHE3 PF17078.5 gi|433590591|ref|YP_007280087.1| - 0.72 9.5 12.3 0.92 9.2 3.2 2.3 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 ADIP PF11559.8 gi|433590591|ref|YP_007280087.1| - 0.89 9.6 18.9 1.9 8.6 6.4 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding HemX PF04375.14 gi|433590591|ref|YP_007280087.1| - 1 8.6 12.4 3.9 6.7 2.9 2.2 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase GAS PF13851.6 gi|433590591|ref|YP_007280087.1| - 1.2 8.5 17.5 1.6 8.0 6.6 2.3 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Baculo_PEP_C PF04513.12 gi|433590591|ref|YP_007280087.1| - 1.2 9.1 6.6 6.5 6.8 0.2 2.6 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Lebercilin PF15619.6 gi|433590591|ref|YP_007280087.1| - 1.3 8.6 23.8 2.4 7.8 8.2 2.3 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DivIC PF04977.15 gi|433590591|ref|YP_007280087.1| - 1.4 8.7 18.0 2.5 7.9 2.1 3.7 2 1 1 3 3 3 0 Septum formation initiator EzrA PF06160.12 gi|433590591|ref|YP_007280087.1| - 1.4 7.0 10.4 1.1 7.3 3.1 2.0 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA Phage_GPO PF05929.11 gi|433590591|ref|YP_007280087.1| - 1.5 8.4 8.8 16 5.0 8.4 2.2 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase USP8_interact PF08941.10 gi|433590591|ref|YP_007280087.1| - 1.5 8.6 6.5 3.2 7.5 0.8 2.3 2 0 0 2 2 2 0 USP8 interacting DUF812 PF05667.11 gi|433590591|ref|YP_007280087.1| - 1.6 7.6 16.5 4 6.2 16.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF812) IFT57 PF10498.9 gi|433590591|ref|YP_007280087.1| - 1.6 7.6 10.7 4.8 6.1 10.1 1.8 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Golgin_A5 PF09787.9 gi|433590591|ref|YP_007280087.1| - 1.7 8.0 20.5 3.8 6.9 19.9 1.8 1 1 0 1 1 1 0 Golgin subfamily A member 5 DUF1664 PF07889.12 gi|433590591|ref|YP_007280087.1| - 1.7 8.7 11.1 3.4 7.7 4.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Sec2p PF06428.11 gi|433590591|ref|YP_007280087.1| - 1.8 8.6 14.0 5.7 7.0 2.2 2.9 1 1 0 2 2 2 0 GDP/GTP exchange factor Sec2p Med9 PF07544.13 gi|433590591|ref|YP_007280087.1| - 1.8 8.7 18.9 4.8 7.3 5.1 3.3 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Med4 PF10018.9 gi|433590591|ref|YP_007280087.1| - 1.9 8.1 11.9 0.4 10.3 3.9 2.4 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF1151 PF06625.11 gi|433590591|ref|YP_007280087.1| - 2.5 8.1 13.4 0.28 11.1 2.9 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1151) HMMR_N PF15905.5 gi|433590591|ref|YP_007280087.1| - 2.5 7.5 17.1 6.7 6.1 17.2 1.6 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Laminin_II PF06009.12 gi|433590591|ref|YP_007280087.1| - 2.7 8.0 8.1 2.8 7.9 1.6 2.5 1 1 1 2 2 2 0 Laminin Domain II HAUS-augmin3 PF14932.6 gi|433590591|ref|YP_007280087.1| - 3.1 7.3 18.5 11 5.5 6.9 2.4 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 HR1 PF02185.16 gi|433590591|ref|YP_007280087.1| - 3.2 7.9 15.0 2 8.6 5.6 3.8 2 1 1 3 3 3 0 Hr1 repeat Wtap PF17098.5 gi|433590591|ref|YP_007280087.1| - 3.3 7.6 19.3 3.5 7.5 6.7 2.3 2 0 0 2 2 2 0 WTAP/Mum2p family DHR10 PF18595.1 gi|433590591|ref|YP_007280087.1| - 3.5 7.7 23.5 59 3.8 22.8 2.6 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain DivIVA PF05103.13 gi|433590591|ref|YP_007280087.1| - 4 7.5 15.2 9.4 6.3 6.0 3.0 1 1 1 2 2 2 0 DivIVA protein Striatin PF08232.12 gi|433590591|ref|YP_007280087.1| - 4 8.0 16.7 1.2 9.7 0.8 2.8 3 0 0 3 3 2 0 Striatin family APG6_N PF17675.1 gi|433590591|ref|YP_007280087.1| - 4 8.0 29.4 1.1 9.8 13.0 2.5 1 1 1 2 2 2 0 Apg6 coiled-coil region UPF0242 PF06785.11 gi|433590591|ref|YP_007280087.1| - 4.7 7.3 20.2 1.5 8.8 7.0 2.3 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Rootletin PF15035.6 gi|433590591|ref|YP_007280087.1| - 4.8 7.2 19.9 12 5.8 19.7 1.8 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion PilO PF04350.13 gi|433590591|ref|YP_007280087.1| - 6.6 6.9 6.9 73 3.5 0.0 3.2 2 1 1 3 3 3 0 Pilus assembly protein, PilO XhlA PF10779.9 gi|433590591|ref|YP_007280087.1| - 7 6.9 11.7 1 9.6 2.1 2.6 2 0 0 2 2 2 0 Haemolysin XhlA DUF16 PF01519.16 gi|433590591|ref|YP_007280087.1| - 7.5 7.1 11.1 20 5.8 0.9 2.6 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF2730 PF10805.8 gi|433590591|ref|YP_007280087.1| - 7.6 6.7 9.8 2 8.6 0.4 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) Spc24 PF08286.11 gi|433590591|ref|YP_007280087.1| - 9.2 6.6 15.6 17 5.7 3.2 2.9 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 ERCC3_RAD25_C PF16203.5 gi|433590592|ref|YP_007280088.1| - 1.7e-24 86.4 0.0 2.7e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|433590592|ref|YP_007280088.1| - 1.2e-13 51.4 0.0 2.1e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|433590592|ref|YP_007280088.1| - 4.4e-13 49.5 0.0 2.5e-12 47.1 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|433590592|ref|YP_007280088.1| - 1.4e-11 43.7 0.0 1.7e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.29 gi|433590592|ref|YP_007280088.1| - 4.1e-06 26.7 0.0 1.9e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|433590592|ref|YP_007280088.1| - 0.0022 17.8 0.2 0.016 14.9 0.0 2.4 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.9 gi|433590592|ref|YP_007280088.1| - 0.013 14.7 0.0 4.6 6.4 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.6 gi|433590592|ref|YP_007280088.1| - 0.024 14.8 1.0 0.15 12.2 0.0 2.8 3 1 0 4 4 4 0 AAA domain AAA_25 PF13481.6 gi|433590592|ref|YP_007280088.1| - 0.036 13.6 8.1 0.15 11.6 0.0 3.7 5 0 0 5 5 5 0 AAA domain AAA PF00004.29 gi|433590592|ref|YP_007280088.1| - 0.12 12.8 0.0 0.27 11.7 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|433590592|ref|YP_007280088.1| - 0.18 11.6 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain TFIIB PF00382.19 gi|433590594|ref|YP_007280090.1| - 1.7e-36 124.1 0.1 2.2e-18 66.1 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433590594|ref|YP_007280090.1| - 1.6e-16 59.5 2.4 3.7e-16 58.4 2.4 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|433590594|ref|YP_007280090.1| - 0.024 14.4 0.0 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 Cyclin, N-terminal domain Ribosomal_S27e PF01667.17 gi|433590594|ref|YP_007280090.1| - 0.031 14.0 0.1 0.077 12.7 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|433590594|ref|YP_007280090.1| - 0.11 12.2 0.2 0.27 11.0 0.2 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain HARE-HTH PF05066.13 gi|433590594|ref|YP_007280090.1| - 0.16 12.4 0.0 13 6.3 0.0 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain GATA PF00320.27 gi|433590594|ref|YP_007280090.1| - 0.53 9.9 2.2 6.5 6.5 0.3 2.6 2 0 0 2 2 2 0 GATA zinc finger HTH_20 PF12840.7 gi|433590595|ref|YP_007280091.1| - 0.0013 18.7 0.1 0.0095 16.0 0.1 2.3 1 1 0 1 1 1 1 Helix-turn-helix domain 7TMR-DISM_7TM PF07695.11 gi|433590595|ref|YP_007280091.1| - 0.0051 16.7 0.0 0.0066 16.4 0.0 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling Thymopoietin PF08198.11 gi|433590595|ref|YP_007280091.1| - 0.017 14.7 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 Thymopoietin protein HTH_11 PF08279.12 gi|433590595|ref|YP_007280091.1| - 0.029 14.3 0.1 0.058 13.3 0.1 1.5 1 0 0 1 1 1 0 HTH domain Beta_helix PF13229.6 gi|433590596|ref|YP_007280092.1| - 0.0022 17.9 1.6 0.024 14.5 0.5 2.7 2 1 1 3 3 3 2 Right handed beta helix region TAT_signal PF10518.9 gi|433590596|ref|YP_007280092.1| - 0.012 15.4 7.1 0.03 14.2 7.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4115 PF13464.6 gi|433590596|ref|YP_007280092.1| - 0.12 12.6 0.3 1.3 9.3 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4115) Big_3_5 PF16640.5 gi|433590597|ref|YP_007280093.1| - 0.014 15.6 2.8 0.014 15.6 2.8 2.6 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) TAT_signal PF10518.9 gi|433590597|ref|YP_007280093.1| - 1.4 8.9 7.5 3.2 7.7 7.5 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HRG PF16954.5 gi|433590598|ref|YP_007280094.1| - 1.3 9.5 4.0 16 5.9 0.6 3.4 2 1 0 2 2 2 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene Phosphodiest PF01663.22 gi|433590600|ref|YP_007280096.1| - 9.5e-38 130.7 0.0 6.8e-36 124.6 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase HTH_33 PF13592.6 gi|433590600|ref|YP_007280096.1| - 0.13 11.9 0.0 11 5.8 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix Acetyltransf_6 PF13480.7 gi|433590601|ref|YP_007280097.1| - 3.3e-20 72.7 0.5 8.4e-20 71.4 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|433590601|ref|YP_007280097.1| - 4.5e-05 22.5 0.0 0.0037 16.2 0.0 2.1 2 0 0 2 2 2 2 FemAB family DUF1616 PF07760.11 gi|433590602|ref|YP_007280098.1| - 2.7e-89 299.4 4.0 3.3e-89 299.2 4.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF1634 PF07843.11 gi|433590602|ref|YP_007280098.1| - 0.6 10.2 6.0 1 9.5 3.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1634) DUF3262 PF11660.8 gi|433590603|ref|YP_007280099.1| - 1.4 9.4 0.0 1.4 9.4 0.0 4.6 5 0 0 5 5 5 0 Protein of unknown function (DUF3262) OppC_N PF12911.7 gi|433590603|ref|YP_007280099.1| - 2.3 8.2 0.0 2.3 8.2 0.0 6.2 7 2 0 7 7 7 0 N-terminal TM domain of oligopeptide transport permease C BNR_2 PF13088.6 gi|433590604|ref|YP_007280100.1| - 0.033 13.5 0.2 0.071 12.4 0.1 1.6 2 0 0 2 2 2 0 BNR repeat-like domain BNR PF02012.20 gi|433590604|ref|YP_007280100.1| - 0.93 9.8 7.2 11 6.5 1.2 3.7 3 0 0 3 3 3 0 BNR/Asp-box repeat DUF4957 PF16318.5 gi|433590605|ref|YP_007280101.1| - 0.0026 17.7 0.1 0.0077 16.2 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4957) Beta_helix PF13229.6 gi|433590605|ref|YP_007280101.1| - 0.13 12.1 23.6 0.11 12.3 17.4 3.5 2 2 1 3 3 3 0 Right handed beta helix region FliC_SP PF12613.8 gi|433590605|ref|YP_007280101.1| - 6 7.5 9.6 17 6.0 9.6 1.7 1 0 0 1 1 1 0 Flagellin structural protein Polysacc_synt_3 PF13440.6 gi|433590606|ref|YP_007280102.1| - 1.1e-20 74.1 5.7 1.1e-20 74.1 5.7 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|433590606|ref|YP_007280102.1| - 8.6e-18 64.7 12.2 8.6e-18 64.7 12.2 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|433590606|ref|YP_007280102.1| - 1.1e-11 45.0 17.0 1.1e-11 45.0 17.0 3.8 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|433590606|ref|YP_007280102.1| - 6.6e-10 38.9 19.3 3.4e-09 36.6 9.8 3.0 2 0 0 2 2 2 2 MatE MurJ PF03023.14 gi|433590606|ref|YP_007280102.1| - 0.056 12.0 27.0 0.14 10.7 22.0 2.9 2 1 0 2 2 2 0 Lipid II flippase MurJ Phosphodiest PF01663.22 gi|433590607|ref|YP_007280103.1| - 6.5e-46 157.5 0.2 3.6e-45 155.1 0.2 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|433590607|ref|YP_007280103.1| - 7.6e-05 22.2 0.0 0.00013 21.4 0.0 1.3 1 0 0 1 1 1 1 Metalloenzyme superfamily PglZ PF08665.12 gi|433590607|ref|YP_007280103.1| - 0.029 14.4 0.0 0.061 13.4 0.0 1.4 1 0 0 1 1 1 0 PglZ domain Glycos_transf_1 PF00534.20 gi|433590608|ref|YP_007280104.1| - 9.6e-28 96.8 0.0 1.3e-27 96.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433590608|ref|YP_007280104.1| - 1.5e-24 86.9 0.0 2.5e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|433590608|ref|YP_007280104.1| - 7e-07 29.4 0.3 1.6e-06 28.2 0.1 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|433590608|ref|YP_007280104.1| - 4e-06 27.1 0.0 8.6e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|433590608|ref|YP_007280104.1| - 0.00044 20.7 0.3 0.00044 20.7 0.3 2.1 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Sulfatase PF00884.23 gi|433590609|ref|YP_007280105.1| - 7e-42 143.9 0.0 9.3e-42 143.5 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|433590609|ref|YP_007280105.1| - 2.7e-13 50.2 1.4 4.9e-08 32.9 0.1 2.4 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|433590609|ref|YP_007280105.1| - 1e-05 24.4 0.0 1.8e-05 23.6 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|433590609|ref|YP_007280105.1| - 0.0064 15.6 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Acetyltransf_6 PF13480.7 gi|433590610|ref|YP_007280106.1| - 7.1e-24 84.6 0.2 1.4e-23 83.7 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|433590610|ref|YP_007280106.1| - 2.6e-05 23.3 0.0 6.7e-05 21.9 0.0 1.6 1 1 1 2 2 2 1 FemAB family Pec_lyase PF09492.10 gi|433590611|ref|YP_007280107.1| - 4.2e-05 23.0 0.0 9.3e-05 21.9 0.0 1.6 1 1 0 1 1 1 1 Pectic acid lyase Glyco_hydro_76 PF03663.14 gi|433590611|ref|YP_007280107.1| - 4.5e-05 23.1 0.0 0.0071 15.9 0.0 2.3 2 1 0 2 2 2 2 Glycosyl hydrolase family 76 LANC_like PF05147.13 gi|433590611|ref|YP_007280107.1| - 0.00035 19.3 0.0 0.27 9.8 0.0 2.5 2 1 0 2 2 2 2 Lanthionine synthetase C-like protein Glyco_hydro_88 PF07470.13 gi|433590611|ref|YP_007280107.1| - 0.0024 17.0 0.7 0.014 14.5 0.8 2.3 1 1 1 2 2 2 1 Glycosyl Hydrolase Family 88 EFF-AFF PF14884.6 gi|433590611|ref|YP_007280107.1| - 0.016 13.3 0.0 0.022 12.9 0.0 1.1 1 0 0 1 1 1 0 Type I membrane glycoproteins cell-cell fusogen TPR_14 PF13428.6 gi|433590611|ref|YP_007280107.1| - 5.3 8.1 0.0 5.3 8.1 0.0 3.9 6 0 0 6 6 6 0 Tetratricopeptide repeat DUF354 PF04007.12 gi|433590612|ref|YP_007280108.1| - 3.2e-06 26.4 0.0 2.4e-05 23.6 0.0 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|433590612|ref|YP_007280108.1| - 6.6e-06 26.2 0.3 1.2e-05 25.4 0.3 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.20 gi|433590612|ref|YP_007280108.1| - 0.018 15.1 0.0 0.04 13.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Lys_export PF03956.13 gi|433590613|ref|YP_007280109.1| - 9.2e-62 208.0 28.6 6.5e-55 185.6 18.5 2.0 2 0 0 2 2 2 2 Lysine exporter LysO FMN_dh PF01070.18 gi|433590614|ref|YP_007280110.1| - 3.7e-28 98.5 3.2 2.9e-19 69.3 2.6 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|433590614|ref|YP_007280110.1| - 0.0039 16.3 9.2 0.022 13.8 0.3 3.4 4 0 0 4 4 4 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|433590614|ref|YP_007280110.1| - 0.09 11.9 6.8 0.1 11.7 4.9 2.0 2 1 0 2 2 2 0 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|433590614|ref|YP_007280110.1| - 0.38 9.9 1.4 1.3 8.2 1.4 1.8 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase DUF2334 PF10096.9 gi|433590616|ref|YP_007280112.1| - 0.21 11.2 0.0 0.3 10.7 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) Epimerase_2 PF02350.19 gi|433590617|ref|YP_007280113.1| - 1.8e-100 336.2 0.0 2.1e-100 336.0 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase baeRF_family2 PF18844.1 gi|433590617|ref|YP_007280113.1| - 1.1 9.4 7.6 0.12 12.5 0.9 2.7 3 0 0 3 3 3 0 Bacterial archaeo-eukaryotic release factor family 2 PAS_3 PF08447.12 gi|433590618|ref|YP_007280114.1| - 1.3e-16 60.6 0.0 1.7e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|433590618|ref|YP_007280114.1| - 5.1e-12 45.8 0.0 6.1e-12 45.5 0.0 1.0 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|433590618|ref|YP_007280114.1| - 1.9e-11 44.2 0.2 2.1e-11 44.0 0.2 1.0 1 0 0 1 1 1 1 PAS fold PAS_11 PF14598.6 gi|433590618|ref|YP_007280114.1| - 4e-05 23.7 0.0 4.8e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|433590618|ref|YP_007280114.1| - 0.00013 21.9 0.0 0.0002 21.3 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|433590618|ref|YP_007280114.1| - 0.00053 20.2 0.0 0.00063 20.0 0.0 1.1 1 0 0 1 1 1 1 PAS domain SnoaL_2 PF12680.7 gi|433590618|ref|YP_007280114.1| - 0.05 14.3 1.0 0.07 13.8 0.7 1.4 1 1 0 1 1 1 0 SnoaL-like domain DapB_N PF01113.20 gi|433590618|ref|YP_007280114.1| - 0.14 12.3 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus PAS_3 PF08447.12 gi|433590619|ref|YP_007280115.1| - 7e-13 48.7 0.0 1.8e-12 47.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|433590619|ref|YP_007280115.1| - 1.6e-10 41.2 0.8 1.3e-09 38.3 0.1 2.5 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|433590619|ref|YP_007280115.1| - 1.9e-10 40.8 0.1 3.9e-10 39.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|433590619|ref|YP_007280115.1| - 7.6e-10 39.3 0.0 1.9e-09 38.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|433590619|ref|YP_007280115.1| - 7.4e-05 22.7 0.1 0.00036 20.5 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|433590619|ref|YP_007280115.1| - 0.00028 20.9 0.0 0.00065 19.7 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|433590619|ref|YP_007280115.1| - 0.00033 20.8 0.0 0.0034 17.6 0.0 2.4 3 0 0 3 3 3 1 PAS domain HisKA_4TM PF16926.5 gi|433590619|ref|YP_007280115.1| - 0.00035 20.2 0.2 0.00035 20.2 0.2 1.7 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|433590619|ref|YP_007280115.1| - 0.0021 18.1 0.4 0.0056 16.7 0.4 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|433590619|ref|YP_007280115.1| - 0.039 13.8 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3201 PF11447.8 gi|433590619|ref|YP_007280115.1| - 0.19 11.3 0.0 0.43 10.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3201) Myosin_N PF02736.19 gi|433590619|ref|YP_007280115.1| - 0.87 9.5 4.5 7.1 6.6 0.0 3.4 4 0 0 4 4 4 0 Myosin N-terminal SH3-like domain Phosphodiest PF01663.22 gi|433590620|ref|YP_007280116.1| - 7.2e-47 160.7 0.1 1.6e-45 156.3 0.1 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Polysacc_deac_1 PF01522.21 gi|433590621|ref|YP_007280117.1| - 8.7e-09 35.3 0.0 5.3e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide deacetylase GvpO PF05800.11 gi|433590621|ref|YP_007280117.1| - 0.1 12.6 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpO GFO_IDH_MocA PF01408.22 gi|433590622|ref|YP_007280118.1| - 9e-24 84.6 0.6 1.9e-23 83.5 0.1 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|433590622|ref|YP_007280118.1| - 1.5e-06 28.2 0.0 4.7e-06 26.6 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|433590622|ref|YP_007280118.1| - 0.0055 16.1 0.1 0.052 12.9 0.0 2.1 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|433590622|ref|YP_007280118.1| - 0.025 15.0 0.2 0.059 13.8 0.1 1.7 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|433590622|ref|YP_007280118.1| - 0.033 14.9 0.1 0.081 13.6 0.1 1.6 1 0 0 1 1 1 0 CoA binding domain Sacchrp_dh_NADP PF03435.18 gi|433590622|ref|YP_007280118.1| - 0.041 14.1 0.1 0.11 12.8 0.1 1.8 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CoA_binding_2 PF13380.6 gi|433590622|ref|YP_007280118.1| - 0.07 13.6 0.3 0.14 12.6 0.3 1.5 1 0 0 1 1 1 0 CoA binding domain DUF362 PF04015.12 gi|433590623|ref|YP_007280119.1| - 2.7e-08 34.3 0.0 5.9e-08 33.2 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Epimerase PF01370.21 gi|433590624|ref|YP_007280120.1| - 1.2e-31 110.0 0.0 3.6e-31 108.5 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|433590624|ref|YP_007280120.1| - 2.5e-23 82.5 0.0 3.7e-23 81.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|433590624|ref|YP_007280120.1| - 3.9e-19 69.2 0.0 2.5e-18 66.6 0.0 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|433590624|ref|YP_007280120.1| - 1.3e-18 67.6 0.1 1.8e-18 67.1 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|433590624|ref|YP_007280120.1| - 1.3e-14 54.0 0.0 2.3e-08 33.5 0.0 2.3 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|433590624|ref|YP_007280120.1| - 3.4e-09 36.2 0.0 5.7e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|433590624|ref|YP_007280120.1| - 1.5e-08 34.5 0.0 2.2e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.15 gi|433590624|ref|YP_007280120.1| - 1.4e-06 27.7 0.0 0.004 16.3 0.0 2.9 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|433590624|ref|YP_007280120.1| - 0.011 15.1 0.3 2.2 7.7 0.0 2.7 2 1 0 2 2 2 0 short chain dehydrogenase Glyco_trans_1_4 PF13692.6 gi|433590625|ref|YP_007280121.1| - 8.2e-12 45.7 1.0 1.8e-11 44.6 0.1 2.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|433590625|ref|YP_007280121.1| - 3.7e-11 43.3 0.1 8.5e-10 38.9 0.0 2.4 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|433590625|ref|YP_007280121.1| - 1.9e-09 37.3 0.0 3.4e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|433590625|ref|YP_007280121.1| - 1.2e-08 35.6 16.0 1.2e-08 35.5 5.8 2.7 2 1 0 3 3 3 2 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|433590625|ref|YP_007280121.1| - 0.0019 18.5 0.1 0.0067 16.8 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|433590625|ref|YP_007280121.1| - 0.0024 17.9 0.1 0.0042 17.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF4987 PF16377.5 gi|433590625|ref|YP_007280121.1| - 0.17 12.0 0.0 0.31 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function PEP_hydrolase PF09370.10 gi|433590625|ref|YP_007280121.1| - 0.19 10.9 0.0 0.28 10.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like DUF354 PF04007.12 gi|433590626|ref|YP_007280122.1| - 1.9e-09 37.1 0.0 1.3e-08 34.3 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|433590626|ref|YP_007280122.1| - 0.00013 22.0 0.6 0.00044 20.3 0.2 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433590626|ref|YP_007280122.1| - 0.0002 21.8 0.2 0.0002 21.8 0.2 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain LpxB PF02684.15 gi|433590626|ref|YP_007280122.1| - 0.25 10.1 0.1 0.37 9.6 0.1 1.2 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase HypA PF01155.19 gi|433590627|ref|YP_007280123.1| - 0.00038 20.4 0.7 0.00038 20.4 0.7 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|433590627|ref|YP_007280123.1| - 0.00049 20.1 0.9 0.00055 19.9 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|433590627|ref|YP_007280123.1| - 0.00065 20.4 0.4 0.0007 20.3 0.4 1.1 1 0 0 1 1 1 1 zinc-ribbon family TFIIS_C PF01096.18 gi|433590627|ref|YP_007280123.1| - 0.006 16.4 0.6 3.1 7.7 0.1 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) TackOD1 PF18551.1 gi|433590627|ref|YP_007280123.1| - 0.013 15.2 0.7 0.014 15.1 0.7 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-ribbon_3 PF13248.6 gi|433590627|ref|YP_007280123.1| - 0.069 12.6 3.3 0.15 11.5 3.3 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|433590627|ref|YP_007280123.1| - 0.12 12.1 4.2 0.26 11.1 4.2 1.5 1 1 0 1 1 1 0 Rubredoxin metal binding domain zinc_ribbon_2 PF13240.6 gi|433590627|ref|YP_007280123.1| - 0.18 11.5 3.9 0.29 10.9 3.9 1.3 1 0 0 1 1 1 0 zinc-ribbon domain NRDD PF13597.6 gi|433590627|ref|YP_007280123.1| - 0.19 10.5 1.6 0.23 10.2 1.6 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn_Tnp_IS1595 PF12760.7 gi|433590627|ref|YP_007280123.1| - 0.27 11.2 3.5 0.78 9.8 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433590627|ref|YP_007280123.1| - 1.2 9.3 6.0 5.5 7.2 6.0 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Glycos_transf_2 PF00535.26 gi|433590628|ref|YP_007280124.1| - 6e-20 71.7 0.1 1.1e-19 70.8 0.1 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|433590628|ref|YP_007280124.1| - 0.001 19.0 1.8 0.011 15.6 1.9 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF373 PF04123.13 gi|433590628|ref|YP_007280124.1| - 0.072 12.5 0.2 0.61 9.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF373) UDPG_MGDP_dh_N PF03721.14 gi|433590629|ref|YP_007280125.1| - 2.2e-39 134.9 0.0 3.5e-39 134.3 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|433590629|ref|YP_007280125.1| - 1.2e-17 63.8 0.0 2.2e-17 63.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|433590629|ref|YP_007280125.1| - 1.1e-14 54.7 0.0 2.5e-14 53.6 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|433590629|ref|YP_007280125.1| - 1.4e-06 28.6 0.1 4.3e-06 27.0 0.1 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|433590629|ref|YP_007280125.1| - 0.0044 17.3 0.6 0.041 14.1 0.2 2.5 2 0 0 2 2 2 1 TrkA-N domain 3HCDH_N PF02737.18 gi|433590629|ref|YP_007280125.1| - 0.017 15.0 0.2 0.028 14.3 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|433590630|ref|YP_007280126.1| - 2.6e-27 96.1 0.4 4.2e-27 95.3 0.4 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|433590630|ref|YP_007280126.1| - 2.5e-06 27.0 0.0 7e-06 25.5 0.0 1.8 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|433590630|ref|YP_007280126.1| - 5.7e-05 23.6 0.1 0.00028 21.4 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|433590630|ref|YP_007280126.1| - 0.00022 21.4 0.4 0.00061 20.0 0.1 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|433590630|ref|YP_007280126.1| - 0.00024 20.7 0.0 0.00046 19.8 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain DapB_N PF01113.20 gi|433590630|ref|YP_007280126.1| - 0.0066 16.6 0.3 0.016 15.3 0.3 1.7 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA_C PF02894.17 gi|433590630|ref|YP_007280126.1| - 0.014 15.4 0.0 0.038 14.0 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|433590630|ref|YP_007280126.1| - 0.016 15.7 0.1 0.035 14.6 0.1 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF5340 PF17275.2 gi|433590630|ref|YP_007280126.1| - 0.051 13.7 0.2 2.1 8.5 0.0 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5340) Sacchrp_dh_NADP PF03435.18 gi|433590630|ref|YP_007280126.1| - 0.13 12.5 0.8 0.72 10.1 0.8 2.2 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DegT_DnrJ_EryC1 PF01041.17 gi|433590631|ref|YP_007280127.1| - 6.5e-121 404.0 0.1 7.4e-121 403.8 0.1 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|433590631|ref|YP_007280127.1| - 6.7e-08 32.1 0.0 9.8e-08 31.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|433590631|ref|YP_007280127.1| - 4.2e-07 29.6 0.4 9.5e-07 28.4 0.4 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|433590631|ref|YP_007280127.1| - 0.014 14.4 0.0 0.02 13.9 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|433590631|ref|YP_007280127.1| - 0.049 12.2 0.0 0.073 11.6 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Hexapep PF00132.24 gi|433590632|ref|YP_007280128.1| - 9.8e-27 91.7 16.0 9.7e-09 34.6 0.5 5.1 4 1 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|433590632|ref|YP_007280128.1| - 1.9e-18 65.9 14.0 9.5e-08 31.7 0.7 5.1 4 1 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase Cas6b_C PF17262.2 gi|433590632|ref|YP_007280128.1| - 0.25 11.4 0.1 0.35 11.0 0.1 1.3 1 0 0 1 1 1 0 Cas6b C-terminal domain FA_desaturase PF00487.24 gi|433590633|ref|YP_007280129.1| - 0.0012 18.8 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 Fatty acid desaturase DUF1616 PF07760.11 gi|433590634|ref|YP_007280130.1| - 2.1e-79 267.0 1.3 2.6e-79 266.7 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Bac_export_2 PF01312.19 gi|433590634|ref|YP_007280130.1| - 0.0082 15.4 0.2 0.011 15.0 0.2 1.2 1 0 0 1 1 1 1 FlhB HrpN YscU SpaS Family UbiA PF01040.18 gi|433590634|ref|YP_007280130.1| - 1 8.6 13.4 0.021 14.1 3.6 2.0 1 1 1 2 2 2 0 UbiA prenyltransferase family PadR PF03551.14 gi|433590635|ref|YP_007280131.1| - 5.8e-14 51.8 0.4 6.7e-14 51.6 0.4 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|433590635|ref|YP_007280131.1| - 0.002 18.0 0.1 0.0027 17.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|433590635|ref|YP_007280131.1| - 0.025 15.1 0.0 0.03 14.8 0.0 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF4358 PF14270.6 gi|433590635|ref|YP_007280131.1| - 0.025 14.9 0.0 0.04 14.2 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4358) HTH_34 PF13601.6 gi|433590635|ref|YP_007280131.1| - 0.04 14.1 0.0 0.046 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|433590635|ref|YP_007280131.1| - 0.049 13.4 0.1 0.061 13.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) B-block_TFIIIC PF04182.12 gi|433590635|ref|YP_007280131.1| - 0.05 13.8 0.0 0.063 13.4 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF1495 PF07381.11 gi|433590635|ref|YP_007280131.1| - 0.093 12.6 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_20 PF12840.7 gi|433590636|ref|YP_007280132.1| - 1.7e-06 28.0 0.1 3.1e-06 27.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|433590636|ref|YP_007280132.1| - 0.00029 20.7 0.0 0.00043 20.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|433590636|ref|YP_007280132.1| - 0.00045 19.7 0.1 0.0007 19.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433590636|ref|YP_007280132.1| - 0.0011 18.9 0.0 0.002 18.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|433590636|ref|YP_007280132.1| - 0.0018 18.2 0.1 0.0029 17.5 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|433590636|ref|YP_007280132.1| - 0.0038 17.0 0.0 0.0063 16.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|433590636|ref|YP_007280132.1| - 0.021 15.3 0.1 0.033 14.7 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|433590636|ref|YP_007280132.1| - 0.037 13.8 0.0 0.054 13.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain FUR PF01475.19 gi|433590636|ref|YP_007280132.1| - 0.14 12.3 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HypA PF01155.19 gi|433590638|ref|YP_007280134.1| - 0.006 16.6 0.3 0.0066 16.5 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|433590638|ref|YP_007280134.1| - 0.016 15.2 1.2 0.024 14.7 1.2 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-DNL PF05180.12 gi|433590638|ref|YP_007280134.1| - 0.016 15.1 0.9 0.022 14.7 0.9 1.1 1 0 0 1 1 1 0 DNL zinc finger DUF3268 PF11672.8 gi|433590638|ref|YP_007280134.1| - 0.017 15.5 0.4 0.021 15.1 0.4 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain Zn-ribbon_8 PF09723.10 gi|433590638|ref|YP_007280134.1| - 0.017 15.2 1.6 0.037 14.2 1.6 1.6 1 1 1 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.8 gi|433590638|ref|YP_007280134.1| - 0.028 14.3 3.4 0.14 12.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|433590638|ref|YP_007280134.1| - 0.068 13.1 1.3 2.4 8.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|433590638|ref|YP_007280134.1| - 0.1 12.8 2.1 0.26 11.5 2.0 1.8 1 1 0 1 1 1 0 C4-type zinc ribbon domain zf-LITAF-like PF10601.9 gi|433590638|ref|YP_007280134.1| - 0.23 11.7 3.9 1.6 9.1 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Transglut_C PF00927.22 gi|433590640|ref|YP_007280136.1| - 0.033 14.3 0.0 0.067 13.3 0.0 1.4 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain Big_3_5 PF16640.5 gi|433590640|ref|YP_007280136.1| - 0.069 13.3 0.2 0.069 13.3 0.2 3.5 3 1 0 3 3 3 0 Bacterial Ig-like domain (group 3) HTH_IclR PF09339.10 gi|433590641|ref|YP_007280137.1| - 2.6e-05 23.9 0.0 0.00019 21.2 0.0 2.2 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433590641|ref|YP_007280137.1| - 0.00028 20.4 0.0 0.00048 19.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433590641|ref|YP_007280137.1| - 0.0014 18.5 0.1 0.0032 17.3 0.1 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|433590641|ref|YP_007280137.1| - 0.017 15.0 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|433590641|ref|YP_007280137.1| - 0.081 12.9 0.1 0.23 11.5 0.1 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|433590641|ref|YP_007280137.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Epimerase PF01370.21 gi|433590642|ref|YP_007280138.1| - 3.3e-56 190.4 0.0 3.9e-56 190.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|433590642|ref|YP_007280138.1| - 2.5e-54 184.9 0.0 9.5e-54 183.0 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|433590642|ref|YP_007280138.1| - 2.1e-19 69.6 0.0 5.5e-19 68.2 0.0 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|433590642|ref|YP_007280138.1| - 1e-16 60.9 0.1 3.3e-15 56.0 0.1 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|433590642|ref|YP_007280138.1| - 1.3e-12 47.5 0.2 1.6e-12 47.1 0.2 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|433590642|ref|YP_007280138.1| - 7.2e-09 35.2 0.2 5.5e-05 22.5 0.1 2.4 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|433590642|ref|YP_007280138.1| - 1.3e-07 31.7 0.1 2.3e-07 30.9 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|433590642|ref|YP_007280138.1| - 0.00053 19.6 1.0 0.0012 18.5 0.1 1.9 2 0 0 2 2 2 1 NmrA-like family KR PF08659.10 gi|433590642|ref|YP_007280138.1| - 0.01 15.8 0.1 0.61 10.0 0.0 2.3 2 0 0 2 2 2 0 KR domain Methyltransf_17 PF12692.7 gi|433590642|ref|YP_007280138.1| - 0.011 15.7 0.1 0.071 13.1 0.0 2.0 2 0 0 2 2 2 0 S-adenosyl-L-methionine methyltransferase YdjM PF04307.14 gi|433590643|ref|YP_007280139.1| - 0.0033 16.8 0.9 0.0059 15.9 0.9 1.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Amidohydro_1 PF01979.20 gi|433590644|ref|YP_007280140.1| - 9.1e-22 77.8 0.0 1.5e-21 77.1 0.0 1.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|433590644|ref|YP_007280140.1| - 2.4e-15 57.0 0.8 8.3e-09 35.4 0.0 2.9 3 1 0 3 3 3 2 Amidohydrolase family Urease_alpha PF00449.20 gi|433590644|ref|YP_007280140.1| - 0.059 13.7 0.2 0.52 10.7 0.1 2.2 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain DHO_dh PF01180.21 gi|433590646|ref|YP_007280142.1| - 3.9e-86 288.9 0.0 4.5e-86 288.7 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|433590646|ref|YP_007280142.1| - 0.0031 17.0 0.1 0.005 16.3 0.1 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase AP_endonuc_2 PF01261.24 gi|433590646|ref|YP_007280142.1| - 0.028 13.9 0.0 0.078 12.4 0.0 1.8 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel MmgE_PrpD PF03972.14 gi|433590647|ref|YP_007280143.1| - 3.9e-108 361.8 11.0 4.7e-108 361.6 11.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family MaoC_dehydrat_N PF13452.6 gi|433590648|ref|YP_007280144.1| - 8.9e-08 32.3 0.2 4.3e-06 26.9 0.2 2.1 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.19 gi|433590648|ref|YP_007280144.1| - 1.6e-07 30.9 0.2 8.2e-07 28.6 0.2 1.9 1 1 0 1 1 1 1 MaoC like domain 4HBT PF03061.22 gi|433590648|ref|YP_007280144.1| - 0.022 15.1 0.1 0.032 14.6 0.1 1.4 1 0 0 1 1 1 0 Thioesterase superfamily DUF4442 PF14539.6 gi|433590648|ref|YP_007280144.1| - 0.026 14.7 0.0 0.033 14.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) CoA_transf_3 PF02515.17 gi|433590649|ref|YP_007280145.1| - 7.3e-109 364.3 0.0 8.3e-109 364.1 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III MaoC_dehydratas PF01575.19 gi|433590650|ref|YP_007280146.1| - 2.9e-20 72.1 0.3 4e-20 71.6 0.3 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|433590650|ref|YP_007280146.1| - 0.00021 21.4 0.1 0.00032 20.8 0.1 1.4 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase Acyl-CoA_dh_1 PF00441.24 gi|433590651|ref|YP_007280147.1| - 1.6e-36 125.7 1.7 2.6e-36 125.1 1.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|433590651|ref|YP_007280147.1| - 1.9e-23 83.2 0.2 3.9e-23 82.3 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433590651|ref|YP_007280147.1| - 1.6e-20 73.1 0.0 2.9e-20 72.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|433590651|ref|YP_007280147.1| - 3.4e-19 69.5 7.1 6.3e-19 68.6 7.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.28 gi|433590652|ref|YP_007280148.1| - 2e-86 290.3 0.0 2.3e-86 290.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433590652|ref|YP_007280148.1| - 1e-14 55.3 2.7 2.4e-14 54.1 2.7 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 2Fe-2S_thioredx PF01257.19 gi|433590653|ref|YP_007280149.1| - 0.0025 17.7 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Suc_Fer-like PF06999.12 gi|433590653|ref|YP_007280149.1| - 0.0078 16.1 0.0 0.0093 15.9 0.0 1.1 1 0 0 1 1 1 1 Sucrase/ferredoxin-like DUF1636 PF07845.11 gi|433590653|ref|YP_007280149.1| - 0.045 14.2 0.0 0.054 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1636) CbtA PF09490.10 gi|433590654|ref|YP_007280150.1| - 1e-51 176.1 31.7 1.1e-51 175.9 31.7 1.0 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) FhuF PF06276.12 gi|433590654|ref|YP_007280150.1| - 0.0067 16.8 0.3 0.015 15.8 0.3 1.6 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter SBF PF01758.16 gi|433590654|ref|YP_007280150.1| - 0.93 9.1 6.9 0.34 10.6 4.2 1.6 2 0 0 2 2 2 0 Sodium Bile acid symporter family CbtB PF09489.10 gi|433590655|ref|YP_007280151.1| - 1.6e-11 44.1 6.0 1.6e-11 44.1 6.0 1.4 2 0 0 2 2 2 1 Probable cobalt transporter subunit (CbtB) MNHE PF01899.16 gi|433590656|ref|YP_007280152.1| - 4.2e-33 114.1 1.7 5.9e-33 113.7 1.7 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.13 gi|433590657|ref|YP_007280153.1| - 1.2e-18 67.2 4.5 1.2e-18 67.2 4.5 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) SLAC1 PF03595.17 gi|433590657|ref|YP_007280153.1| - 0.018 14.4 3.4 0.022 14.0 3.4 1.1 1 0 0 1 1 1 0 Voltage-dependent anion channel DUF2109 PF09882.9 gi|433590657|ref|YP_007280153.1| - 0.061 13.4 2.5 0.082 12.9 2.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2109) PhaG_MnhG_YufB PF03334.14 gi|433590658|ref|YP_007280154.1| - 4.8e-25 87.6 10.1 6e-25 87.3 10.1 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit SAYSvFN PF10260.9 gi|433590658|ref|YP_007280154.1| - 3.7 7.5 5.4 9.4 6.2 0.6 2.2 2 0 0 2 2 2 0 Uncharacterized conserved domain (SAYSvFN) DUF4040 PF13244.6 gi|433590659|ref|YP_007280155.1| - 2.8e-18 65.8 14.3 2.8e-18 65.8 14.3 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|433590659|ref|YP_007280155.1| - 0.015 15.0 5.5 0.015 15.1 4.8 1.4 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Virul_fac_BrkB PF03631.15 gi|433590659|ref|YP_007280155.1| - 3.1 7.3 15.3 0.42 10.2 9.0 2.2 1 1 1 2 2 2 0 Virulence factor BrkB MnhB PF04039.13 gi|433590660|ref|YP_007280156.1| - 1.5e-18 67.3 15.8 1.9e-18 67.0 15.8 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4013 PF13197.6 gi|433590660|ref|YP_007280156.1| - 0.19 11.6 9.7 0.28 11.0 9.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) DUF998 PF06197.13 gi|433590660|ref|YP_007280156.1| - 0.96 9.0 10.6 0.48 10.0 5.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF998) Oxidored_q2 PF00420.24 gi|433590661|ref|YP_007280157.1| - 7.6e-26 89.8 4.5 9.9e-26 89.4 4.5 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|433590661|ref|YP_007280157.1| - 0.00074 19.4 3.0 0.00074 19.4 3.0 2.1 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) Saf_2TM PF18303.1 gi|433590661|ref|YP_007280157.1| - 0.089 12.4 4.0 0.031 13.9 1.0 1.7 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain LtrA PF06772.11 gi|433590661|ref|YP_007280157.1| - 0.74 9.0 8.9 0.96 8.6 8.9 1.1 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) DUF2892 PF11127.8 gi|433590661|ref|YP_007280157.1| - 0.79 9.8 7.7 0.44 10.6 1.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) PMP1_2 PF08114.11 gi|433590661|ref|YP_007280157.1| - 0.86 9.4 6.6 2 8.2 2.2 2.4 2 0 0 2 2 2 0 ATPase proteolipid family Phage_holin_3_6 PF07332.11 gi|433590661|ref|YP_007280157.1| - 1.5 8.9 9.6 0.13 12.3 2.9 2.0 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III MHYT PF03707.16 gi|433590661|ref|YP_007280157.1| - 8.4 6.7 8.8 26 5.0 5.3 2.6 2 1 0 2 2 2 0 Bacterial signalling protein N terminal repeat Proton_antipo_M PF00361.20 gi|433590662|ref|YP_007280158.1| - 4.7e-59 200.0 19.7 8.4e-59 199.2 19.7 1.4 1 0 0 1 1 1 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|433590662|ref|YP_007280158.1| - 1.5e-05 24.5 8.6 1.5e-05 24.5 8.6 2.6 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein LrgA PF03788.14 gi|433590662|ref|YP_007280158.1| - 0.01 15.8 0.9 0.01 15.8 0.9 3.7 4 1 0 4 4 4 0 LrgA family Proton_antipo_N PF00662.20 gi|433590662|ref|YP_007280158.1| - 0.89 9.7 5.4 1.2 9.2 0.1 3.2 3 0 0 3 3 3 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|433590663|ref|YP_007280159.1| - 3.2e-53 180.9 20.7 1.6e-52 178.5 20.7 2.0 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|433590663|ref|YP_007280159.1| - 2e-05 24.5 0.3 2e-05 24.5 0.3 2.1 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|433590664|ref|YP_007280160.1| - 4e-33 114.9 13.8 4e-33 114.9 13.8 2.4 2 0 0 2 2 2 1 Proton-conducting membrane transporter MASE2 PF05230.11 gi|433590664|ref|YP_007280160.1| - 3.8 7.6 16.2 2 8.6 0.4 4.9 4 1 0 4 4 4 0 MASE2 domain Phage_int_SAM_1 PF02899.17 gi|433590665|ref|YP_007280161.1| - 6.4e-07 29.6 0.1 6.4e-07 29.6 0.1 2.7 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|433590665|ref|YP_007280161.1| - 0.012 15.9 0.0 0.022 15.1 0.0 1.3 1 0 0 1 1 1 0 Phage integrase SAM-like domain SBP_bac_5 PF00496.22 gi|433590666|ref|YP_007280162.1| - 1.2e-74 251.5 0.0 1.6e-74 251.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4936 PF16290.5 gi|433590666|ref|YP_007280162.1| - 0.085 13.5 0.0 0.22 12.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4936) Cas_APE2256 PF09651.10 gi|433590666|ref|YP_007280162.1| - 0.2 11.6 0.0 0.73 9.7 0.0 1.9 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_APE2256) BPD_transp_1 PF00528.22 gi|433590667|ref|YP_007280163.1| - 2.2e-42 144.9 9.7 3.8e-42 144.1 9.7 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.14 gi|433590667|ref|YP_007280163.1| - 0.22 12.1 3.4 0.39 11.4 0.2 2.7 3 0 0 3 3 3 0 Renin receptor-like protein BPD_transp_1 PF00528.22 gi|433590668|ref|YP_007280164.1| - 3e-34 118.4 6.2 3e-34 118.4 6.2 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|433590668|ref|YP_007280164.1| - 2.1e-11 43.6 3.7 3e-11 43.1 0.3 2.7 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C Phage_H_T_join PF05521.11 gi|433590668|ref|YP_007280164.1| - 0.035 14.6 0.0 0.059 13.9 0.0 1.2 1 0 0 1 1 1 0 Phage head-tail joining protein Mem_trans PF03547.18 gi|433590668|ref|YP_007280164.1| - 0.77 8.1 4.7 0.86 7.9 2.0 2.1 1 1 1 2 2 2 0 Membrane transport protein ABC_tran PF00005.27 gi|433590669|ref|YP_007280165.1| - 3.6e-64 215.4 0.0 1e-33 116.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|433590669|ref|YP_007280165.1| - 2.3e-39 133.7 4.9 5.9e-19 68.4 1.4 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|433590669|ref|YP_007280165.1| - 1.3e-16 61.3 1.8 8.9e-06 25.7 0.0 4.1 2 2 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|433590669|ref|YP_007280165.1| - 1.7e-08 34.2 0.6 0.0092 15.4 0.0 3.7 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|433590669|ref|YP_007280165.1| - 1.8e-06 28.3 3.7 0.045 14.0 0.5 3.8 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|433590669|ref|YP_007280165.1| - 6.2e-06 25.9 0.9 0.034 13.9 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|433590669|ref|YP_007280165.1| - 1e-05 26.0 6.8 0.011 16.1 0.8 3.0 2 2 0 2 2 2 2 AAA ATPase domain Mg_chelatase PF01078.21 gi|433590669|ref|YP_007280165.1| - 7.3e-05 22.2 0.0 0.012 15.0 0.0 2.7 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|433590669|ref|YP_007280165.1| - 8.8e-05 22.3 0.8 1.1 9.0 0.1 3.3 3 0 0 3 3 3 2 Sigma-54 interaction domain RsgA_GTPase PF03193.16 gi|433590669|ref|YP_007280165.1| - 0.00011 22.2 0.4 0.021 14.7 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_33 PF13671.6 gi|433590669|ref|YP_007280165.1| - 0.0002 21.5 0.5 0.71 10.0 0.1 3.1 2 2 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|433590669|ref|YP_007280165.1| - 0.00026 20.6 4.4 0.099 12.2 1.8 4.0 3 1 0 3 3 3 1 AAA domain AAA_7 PF12775.7 gi|433590669|ref|YP_007280165.1| - 0.00053 19.6 0.0 0.47 10.0 0.0 2.2 2 0 0 2 2 2 2 P-loop containing dynein motor region NB-ARC PF00931.22 gi|433590669|ref|YP_007280165.1| - 0.00071 18.8 0.9 0.91 8.7 0.2 2.3 2 0 0 2 2 2 2 NB-ARC domain NACHT PF05729.12 gi|433590669|ref|YP_007280165.1| - 0.0013 18.6 0.8 0.46 10.4 0.1 2.4 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.14 gi|433590669|ref|YP_007280165.1| - 0.0027 17.7 1.8 1 9.4 0.1 3.2 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|433590669|ref|YP_007280165.1| - 0.0036 17.4 0.1 0.52 10.4 0.1 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|433590669|ref|YP_007280165.1| - 0.0079 15.5 0.3 0.63 9.3 0.1 2.3 2 0 0 2 2 2 1 Zeta toxin AAA PF00004.29 gi|433590669|ref|YP_007280165.1| - 0.008 16.6 0.3 5.6 7.4 0.1 3.4 4 0 0 4 4 3 1 ATPase family associated with various cellular activities (AAA) AIG1 PF04548.16 gi|433590669|ref|YP_007280165.1| - 0.0087 15.4 0.0 0.32 10.3 0.0 2.2 2 0 0 2 2 2 1 AIG1 family SbcCD_C PF13558.6 gi|433590669|ref|YP_007280165.1| - 0.0098 16.1 1.3 1.8 8.8 0.0 3.3 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.22 gi|433590669|ref|YP_007280165.1| - 0.011 16.2 0.0 1.6 9.1 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_24 PF13479.6 gi|433590669|ref|YP_007280165.1| - 0.013 15.2 0.0 2.4 7.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|433590669|ref|YP_007280165.1| - 0.013 15.2 0.6 4.4 7.0 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family IstB_IS21 PF01695.17 gi|433590669|ref|YP_007280165.1| - 0.018 14.8 0.1 2.1 8.1 0.0 2.6 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF87 PF01935.17 gi|433590669|ref|YP_007280165.1| - 0.025 14.7 2.6 3.9 7.5 0.4 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain ATP-synt_ab PF00006.25 gi|433590669|ref|YP_007280165.1| - 0.066 12.9 0.0 7.9 6.1 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain ATPase PF06745.13 gi|433590669|ref|YP_007280165.1| - 0.2 11.0 1.2 8.2 5.7 0.1 2.5 2 0 0 2 2 2 0 KaiC RTX PF02382.15 gi|433590670|ref|YP_007280166.1| - 2 8.0 4.4 6.1 6.4 4.4 1.8 1 0 0 1 1 1 0 N-terminal domain in RTX protein DNA_RNApol_7kD PF03604.13 gi|433590672|ref|YP_007280168.1| - 0.03 14.0 1.7 3.7 7.3 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|433590672|ref|YP_007280168.1| - 0.13 12.4 2.6 0.37 10.9 2.6 1.7 1 1 0 1 1 1 0 Zinc ribbon domain UbiA PF01040.18 gi|433590673|ref|YP_007280169.1| - 1.8e-09 37.3 16.4 1.8e-09 37.3 16.4 1.6 1 1 1 2 2 2 1 UbiA prenyltransferase family DUF4131 PF13567.6 gi|433590673|ref|YP_007280169.1| - 2.8 7.6 7.5 2.6 7.7 0.7 3.0 1 1 1 3 3 3 0 Domain of unknown function (DUF4131) HisKA_7TM PF16927.5 gi|433590674|ref|YP_007280170.1| - 1.6e-29 103.5 23.4 2e-29 103.2 23.4 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|433590674|ref|YP_007280170.1| - 2.5e-13 50.5 0.0 5.6e-13 49.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|433590674|ref|YP_007280170.1| - 8e-09 35.5 0.1 1.3e-08 34.8 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|433590674|ref|YP_007280170.1| - 0.0013 18.7 0.0 0.004 17.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|433590674|ref|YP_007280170.1| - 0.0026 17.6 0.0 0.0047 16.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|433590674|ref|YP_007280170.1| - 0.047 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|433590674|ref|YP_007280170.1| - 0.05 13.5 0.0 0.097 12.6 0.0 1.5 1 0 0 1 1 1 0 GHKL domain Mem_trans PF03547.18 gi|433590674|ref|YP_007280170.1| - 0.19 10.1 3.6 0.54 8.6 0.2 2.3 1 1 1 2 2 2 0 Membrane transport protein DUF5489 PF17592.2 gi|433590674|ref|YP_007280170.1| - 0.33 11.5 4.8 6.1 7.5 2.2 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5489) DUF1129 PF06570.11 gi|433590674|ref|YP_007280170.1| - 0.96 8.9 10.2 0.42 10.1 3.7 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) HTH_20 PF12840.7 gi|433590675|ref|YP_007280171.1| - 1e-08 35.1 1.0 1.8e-08 34.3 1.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.19 gi|433590675|ref|YP_007280171.1| - 6.9e-05 23.0 0.0 8.8e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family MarR_2 PF12802.7 gi|433590675|ref|YP_007280171.1| - 0.00048 20.0 0.1 0.00068 19.5 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|433590675|ref|YP_007280171.1| - 0.00059 19.6 0.1 0.0012 18.6 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|433590675|ref|YP_007280171.1| - 0.0011 18.8 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|433590675|ref|YP_007280171.1| - 0.0014 18.1 0.0 0.0029 17.1 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433590675|ref|YP_007280171.1| - 0.0055 16.5 0.0 0.0095 15.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|433590675|ref|YP_007280171.1| - 0.011 15.6 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 HTH domain PadR PF03551.14 gi|433590675|ref|YP_007280171.1| - 0.02 14.8 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.6 gi|433590675|ref|YP_007280171.1| - 0.027 14.3 0.1 0.05 13.4 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_36 PF13730.6 gi|433590675|ref|YP_007280171.1| - 0.04 13.9 0.0 0.061 13.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain ArsR PF09824.9 gi|433590675|ref|YP_007280171.1| - 0.12 12.0 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator DUF5353 PF17304.2 gi|433590676|ref|YP_007280172.1| - 0.027 14.2 0.4 0.041 13.6 0.1 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5353) Usp PF00582.26 gi|433590677|ref|YP_007280173.1| - 1.9e-10 41.4 3.9 8.3e-10 39.3 3.9 1.8 1 1 0 1 1 1 1 Universal stress protein family HMA PF00403.26 gi|433590678|ref|YP_007280174.1| - 0.0063 16.9 0.7 44 4.6 0.0 4.4 4 0 0 4 4 4 2 Heavy-metal-associated domain Glyoxalase PF00903.25 gi|433590679|ref|YP_007280175.1| - 3.8e-21 75.6 4.8 9.9e-13 48.4 0.3 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|433590679|ref|YP_007280175.1| - 1.2e-08 35.2 1.8 0.0043 17.3 0.2 4.1 3 1 1 4 4 4 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|433590679|ref|YP_007280175.1| - 2.5e-07 31.5 3.1 0.016 16.0 0.1 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|433590679|ref|YP_007280175.1| - 0.066 13.3 2.5 23 5.1 0.3 3.6 2 2 0 2 2 2 0 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|433590679|ref|YP_007280175.1| - 0.16 11.9 0.0 0.63 10.0 0.0 2.1 2 1 0 2 2 2 0 Glyoxalase-like domain Na_H_antiporter PF03553.14 gi|433590680|ref|YP_007280176.1| - 4.5e-63 213.3 22.7 4.5e-63 213.3 22.7 3.1 1 1 1 2 2 2 1 Na+/H+ antiporter family DUF3318 PF11780.8 gi|433590680|ref|YP_007280176.1| - 0.1 12.5 0.2 0.42 10.5 0.2 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3318) TNFR_16_TM PF18422.1 gi|433590680|ref|YP_007280176.1| - 2.3 8.3 9.5 5.9 6.9 0.5 2.9 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain SirB PF04247.12 gi|433590680|ref|YP_007280176.1| - 4.7 7.3 8.6 0.94 9.6 0.2 3.6 3 1 0 3 3 3 0 Invasion gene expression up-regulator, SirB MMR_HSR1_Xtn PF16897.5 gi|433590681|ref|YP_007280177.1| - 9.9e-31 105.9 0.2 2e-30 104.9 0.2 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|433590681|ref|YP_007280177.1| - 7.2e-23 80.8 0.0 1.6e-22 79.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|433590681|ref|YP_007280177.1| - 4.3e-14 52.3 0.0 7.8e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|433590681|ref|YP_007280177.1| - 3.1e-13 49.5 0.8 1e-10 41.3 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|433590681|ref|YP_007280177.1| - 2.4e-07 30.8 1.2 0.019 14.9 0.0 3.4 3 2 0 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 gi|433590681|ref|YP_007280177.1| - 0.00043 20.4 0.4 0.33 11.0 0.2 2.7 1 1 1 2 2 2 2 Dynamin family ABC_tran PF00005.27 gi|433590681|ref|YP_007280177.1| - 0.0021 18.6 0.1 0.22 12.1 0.0 2.4 2 0 0 2 2 2 1 ABC transporter AIG1 PF04548.16 gi|433590681|ref|YP_007280177.1| - 0.0036 16.7 0.0 0.0074 15.6 0.0 1.5 1 0 0 1 1 1 1 AIG1 family MeaB PF03308.16 gi|433590681|ref|YP_007280177.1| - 0.0061 15.6 0.2 1.3 8.0 0.0 2.6 2 1 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB GTP_EFTU PF00009.27 gi|433590681|ref|YP_007280177.1| - 0.012 15.2 0.1 0.076 12.5 0.0 2.3 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain ThiS PF02597.20 gi|433590681|ref|YP_007280177.1| - 0.025 15.2 0.2 0.18 12.4 0.0 2.6 2 1 0 2 2 2 0 ThiS family Ras PF00071.22 gi|433590681|ref|YP_007280177.1| - 0.045 13.4 0.0 0.6 9.7 0.0 2.4 1 1 1 2 2 2 0 Ras family Roc PF08477.13 gi|433590681|ref|YP_007280177.1| - 0.096 12.9 0.0 0.47 10.7 0.0 2.1 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|433590681|ref|YP_007280177.1| - 0.23 10.9 0.8 0.38 10.2 0.0 1.7 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ABC_tran_CTD PF16326.5 gi|433590681|ref|YP_007280177.1| - 6.5 7.1 10.9 0.2 11.9 3.1 2.5 3 0 0 3 3 3 0 ABC transporter C-terminal domain CARDB PF07705.11 gi|433590682|ref|YP_007280178.1| - 1.9e-07 31.2 8.8 0.0054 17.0 0.1 3.9 4 0 0 4 4 4 2 CARDB DUF4352 PF11611.8 gi|433590682|ref|YP_007280178.1| - 0.022 15.0 0.0 6.2 7.1 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4352) 4HBT PF03061.22 gi|433590682|ref|YP_007280178.1| - 0.078 13.3 1.4 12 6.3 0.0 3.8 3 0 0 3 3 3 0 Thioesterase superfamily DUF1743 PF08489.11 gi|433590684|ref|YP_007280180.1| - 1.6e-39 134.6 0.0 2.9e-39 133.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) C1_1 PF00130.22 gi|433590684|ref|YP_007280180.1| - 0.021 14.7 0.1 0.044 13.7 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.19 gi|433590684|ref|YP_007280180.1| - 0.091 12.8 0.3 0.17 11.9 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|433590684|ref|YP_007280180.1| - 0.097 12.6 2.1 0.25 11.3 2.1 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|433590684|ref|YP_007280180.1| - 0.11 12.6 1.7 10 6.4 0.1 2.8 2 0 0 2 2 2 0 Zinc ribbon domain IBR PF01485.21 gi|433590684|ref|YP_007280180.1| - 0.12 12.7 0.2 0.2 11.9 0.2 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zinc-ribbons_6 PF07191.12 gi|433590684|ref|YP_007280180.1| - 0.19 11.7 1.1 0.39 10.7 1.1 1.5 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|433590684|ref|YP_007280180.1| - 0.33 11.0 2.8 0.86 9.6 2.8 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_3 PF01381.22 gi|433590685|ref|YP_007280181.1| - 3.5e-08 33.4 0.0 6e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|433590685|ref|YP_007280181.1| - 3.9e-06 27.1 0.1 1.1e-05 25.6 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|433590685|ref|YP_007280181.1| - 0.00031 20.7 0.0 0.00062 19.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|433590685|ref|YP_007280181.1| - 0.00048 20.0 0.0 0.001 19.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.6 gi|433590685|ref|YP_007280181.1| - 0.003 17.4 0.5 0.0063 16.4 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|433590685|ref|YP_007280181.1| - 0.0034 17.1 0.0 0.009 15.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AraC PF00165.23 gi|433590685|ref|YP_007280181.1| - 0.023 14.8 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family Sigma70_r4 PF04545.16 gi|433590685|ref|YP_007280181.1| - 0.024 14.2 0.3 0.051 13.1 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_10 PF04967.12 gi|433590685|ref|YP_007280181.1| - 0.095 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain GST_N_3 PF13417.6 gi|433590686|ref|YP_007280182.1| - 8.9e-15 54.9 0.0 1e-14 54.7 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|433590686|ref|YP_007280182.1| - 2.3e-14 53.4 0.0 3.5e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|433590686|ref|YP_007280182.1| - 1.7e-10 41.0 0.0 2e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|433590686|ref|YP_007280182.1| - 0.0063 16.9 0.0 0.0064 16.9 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N PF02798.20 gi|433590686|ref|YP_007280182.1| - 0.011 16.0 0.0 0.018 15.4 0.0 1.4 1 1 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.6 gi|433590686|ref|YP_007280182.1| - 0.026 15.0 0.0 0.031 14.7 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|433590686|ref|YP_007280182.1| - 0.21 11.7 0.1 0.55 10.4 0.1 1.7 1 1 1 2 2 2 0 Thioredoxin Xan_ur_permease PF00860.20 gi|433590687|ref|YP_007280183.1| - 2.8e-37 128.3 40.5 5.7e-37 127.3 40.5 1.5 1 1 0 1 1 1 1 Permease family TNFR_16_TM PF18422.1 gi|433590687|ref|YP_007280183.1| - 6.3 6.8 7.2 1.4 8.9 1.8 2.8 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain TrkA_N PF02254.18 gi|433590688|ref|YP_007280184.1| - 5.1e-26 91.2 0.5 8.1e-26 90.6 0.5 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|433590688|ref|YP_007280184.1| - 6.5e-14 51.5 0.8 8.7e-14 51.1 0.1 1.6 2 0 0 2 2 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|433590688|ref|YP_007280184.1| - 3.8e-07 29.9 0.2 5.9e-07 29.2 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|433590688|ref|YP_007280184.1| - 3.5e-06 27.4 0.1 6.1e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|433590688|ref|YP_007280184.1| - 8e-05 22.6 0.1 0.00013 21.9 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|433590688|ref|YP_007280184.1| - 9e-05 22.2 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|433590688|ref|YP_007280184.1| - 0.00077 19.1 0.2 0.0014 18.2 0.1 1.6 2 0 0 2 2 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|433590688|ref|YP_007280184.1| - 0.0008 18.8 0.0 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|433590688|ref|YP_007280184.1| - 0.00099 19.0 0.1 0.0017 18.3 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|433590688|ref|YP_007280184.1| - 0.001 19.4 0.1 0.0017 18.6 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 gi|433590688|ref|YP_007280184.1| - 0.0012 18.4 0.1 0.0016 17.9 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|433590688|ref|YP_007280184.1| - 0.0017 17.9 0.1 0.0026 17.4 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family F420_oxidored PF03807.17 gi|433590688|ref|YP_007280184.1| - 0.0038 17.8 0.0 0.0076 16.8 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|433590688|ref|YP_007280184.1| - 0.0053 16.9 0.0 0.01 16.0 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 gi|433590688|ref|YP_007280184.1| - 0.0059 17.1 0.1 0.063 13.8 0.1 2.1 2 0 0 2 2 2 1 XdhC Rossmann domain FAD_binding_3 PF01494.19 gi|433590688|ref|YP_007280184.1| - 0.018 14.3 0.0 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain DAO PF01266.24 gi|433590688|ref|YP_007280184.1| - 0.022 14.3 0.2 0.044 13.4 0.2 1.4 1 1 0 1 1 1 0 FAD dependent oxidoreductase Gp_dh_N PF00044.24 gi|433590688|ref|YP_007280184.1| - 0.032 14.6 0.1 0.086 13.2 0.1 1.7 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|433590688|ref|YP_007280184.1| - 0.036 14.6 0.2 0.086 13.4 0.2 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.21 gi|433590688|ref|YP_007280184.1| - 0.062 13.4 0.1 0.083 13.0 0.1 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|433590688|ref|YP_007280184.1| - 0.068 12.5 0.1 0.085 12.1 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain adh_short_C2 PF13561.6 gi|433590688|ref|YP_007280184.1| - 0.068 12.7 0.2 0.1 12.1 0.2 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase N6_N4_Mtase PF01555.18 gi|433590689|ref|YP_007280185.1| - 8.3e-13 48.6 0.0 1e-07 31.9 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Na_Ca_ex PF01699.24 gi|433590690|ref|YP_007280186.1| - 8.5e-47 158.9 37.8 1.1e-25 90.4 16.5 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein GST_N_2 PF13409.6 gi|433590691|ref|YP_007280187.1| - 1.9e-22 79.4 0.0 3.5e-22 78.5 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|433590691|ref|YP_007280187.1| - 3.4e-11 43.0 0.1 7.3e-11 41.9 0.1 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|433590691|ref|YP_007280187.1| - 8e-07 29.2 0.0 1.5e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|433590691|ref|YP_007280187.1| - 2.2e-05 24.8 0.0 0.00059 20.2 0.0 2.4 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 gi|433590691|ref|YP_007280187.1| - 0.00013 22.1 0.0 0.00021 21.4 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_6 PF17171.4 gi|433590691|ref|YP_007280187.1| - 0.00018 21.2 0.1 0.00032 20.4 0.1 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain SANT_DAMP1_like PF16282.5 gi|433590691|ref|YP_007280187.1| - 0.0068 16.6 0.2 0.021 15.0 0.2 1.8 1 0 0 1 1 1 1 SANT/Myb-like domain of DAMP1 Pup PF05639.11 gi|433590691|ref|YP_007280187.1| - 0.032 15.1 0.5 18 6.3 0.0 2.6 2 0 0 2 2 2 0 Pup-like protein HemY_N PF07219.13 gi|433590692|ref|YP_007280188.1| - 0.0022 18.2 0.0 0.0033 17.6 0.0 1.4 1 0 0 1 1 1 1 HemY protein N-terminus SspB PF04386.13 gi|433590692|ref|YP_007280188.1| - 0.048 13.5 0.4 0.06 13.2 0.4 1.1 1 0 0 1 1 1 0 Stringent starvation protein B Epimerase PF01370.21 gi|433590693|ref|YP_007280189.1| - 4.1e-16 59.2 0.0 5.6e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 gi|433590693|ref|YP_007280189.1| - 2e-07 30.5 0.0 3.1e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|433590693|ref|YP_007280189.1| - 7.4e-07 28.6 0.1 3.8e-05 23.0 0.2 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|433590693|ref|YP_007280189.1| - 1.9e-06 27.2 0.1 3.2e-06 26.4 0.1 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|433590693|ref|YP_007280189.1| - 2.8e-06 26.6 0.0 5.5e-06 25.6 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|433590693|ref|YP_007280189.1| - 4.1e-06 26.8 0.0 9.9e-06 25.6 0.0 1.8 1 1 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|433590693|ref|YP_007280189.1| - 0.012 15.0 0.0 0.096 12.1 0.0 2.2 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase DapB_N PF01113.20 gi|433590693|ref|YP_007280189.1| - 0.018 15.2 0.0 0.03 14.4 0.0 1.5 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus KR PF08659.10 gi|433590693|ref|YP_007280189.1| - 0.019 14.9 0.0 3.9 7.3 0.0 2.2 1 1 1 2 2 2 0 KR domain ADH_zinc_N PF00107.26 gi|433590694|ref|YP_007280190.1| - 2.6e-24 85.7 0.5 4.4e-24 84.9 0.5 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|433590694|ref|YP_007280190.1| - 8.4e-21 73.9 0.4 8.4e-21 73.9 0.4 2.0 3 0 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|433590694|ref|YP_007280190.1| - 1.5e-13 51.9 0.3 2.8e-13 51.1 0.1 1.5 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.9 gi|433590694|ref|YP_007280190.1| - 0.054 13.6 2.5 0.16 12.0 2.5 1.8 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer2 PF00111.27 gi|433590695|ref|YP_007280191.1| - 3.8e-11 42.8 0.2 6.3e-11 42.1 0.2 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF393 PF04134.12 gi|433590696|ref|YP_007280192.1| - 0.00013 23.2 0.1 0.00019 22.7 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function, DUF393 TraF PF13728.6 gi|433590696|ref|YP_007280192.1| - 0.048 13.5 0.0 1.4 8.7 0.0 2.1 2 0 0 2 2 2 0 F plasmid transfer operon protein Copper-bind PF00127.20 gi|433590697|ref|YP_007280193.1| - 4.7e-06 27.0 0.0 9.9e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Dyp_perox PF04261.12 gi|433590698|ref|YP_007280194.1| - 1.8e-07 30.5 0.0 0.00017 20.7 0.0 2.3 2 1 0 2 2 2 2 Dyp-type peroxidase family Ferritin PF00210.24 gi|433590699|ref|YP_007280195.1| - 1.1e-17 64.2 0.1 1.7e-17 63.7 0.1 1.2 1 0 0 1 1 1 1 Ferritin-like domain Polyketide_cyc2 PF10604.9 gi|433590700|ref|YP_007280196.1| - 1.1e-12 48.5 1.1 1.3e-12 48.2 1.1 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|433590700|ref|YP_007280196.1| - 0.00059 20.1 0.0 0.00071 19.8 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.20 gi|433590700|ref|YP_007280196.1| - 0.028 14.6 0.4 0.03 14.5 0.4 1.5 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport MutS_V PF00488.21 gi|433590702|ref|YP_007280198.1| - 4.3e-08 33.4 0.0 8.8e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|433590702|ref|YP_007280198.1| - 0.00044 20.8 2.5 0.66 10.6 0.5 3.3 2 0 0 2 2 2 2 Helix-hairpin-helix domain AAA_21 PF13304.6 gi|433590702|ref|YP_007280198.1| - 0.0091 15.8 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_28 PF13521.6 gi|433590702|ref|YP_007280198.1| - 0.036 14.3 0.1 0.036 14.3 0.1 2.6 3 1 0 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|433590702|ref|YP_007280198.1| - 0.089 13.3 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|433590702|ref|YP_007280198.1| - 0.089 12.8 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|433590702|ref|YP_007280198.1| - 1.5 9.1 3.6 20 5.4 0.1 3.4 3 1 0 3 3 3 0 AAA domain PhdYeFM_antitox PF02604.19 gi|433590702|ref|YP_007280198.1| - 2.4 8.0 5.8 1.4 8.8 0.6 3.3 3 1 1 4 4 4 0 Antitoxin Phd_YefM, type II toxin-antitoxin system DUF4404 PF14357.6 gi|433590702|ref|YP_007280198.1| - 6.9 7.4 5.7 54 4.5 0.7 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) FAD-oxidase_C PF02913.19 gi|433590703|ref|YP_007280199.1| - 4.5e-61 206.7 0.1 9.1e-61 205.7 0.1 1.6 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|433590703|ref|YP_007280199.1| - 6e-43 145.9 0.9 1.3e-42 144.8 0.9 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|433590703|ref|YP_007280199.1| - 3.4e-10 40.3 2.8 6.7e-10 39.4 2.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|433590703|ref|YP_007280199.1| - 1.2e-09 38.4 3.6 2.8e-09 37.3 3.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|433590703|ref|YP_007280199.1| - 5.9e-09 36.0 0.0 8.2e-06 25.9 0.0 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|433590703|ref|YP_007280199.1| - 0.00035 20.6 3.7 0.013 15.6 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433590703|ref|YP_007280199.1| - 0.00064 19.8 2.9 0.019 15.1 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.10 gi|433590703|ref|YP_007280199.1| - 0.019 14.3 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_7 PF12838.7 gi|433590703|ref|YP_007280199.1| - 1.6 9.4 8.2 16 6.2 8.3 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|433590703|ref|YP_007280199.1| - 1.9 9.2 11.6 0.17 12.4 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|433590703|ref|YP_007280199.1| - 2.1 8.3 14.4 0.38 10.7 3.5 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|433590703|ref|YP_007280199.1| - 2.2 8.5 7.4 0.44 10.7 0.4 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|433590703|ref|YP_007280199.1| - 7.6 6.8 11.7 0.79 9.9 3.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain GATase_6 PF13522.6 gi|433590704|ref|YP_007280200.1| - 2.8e-19 69.6 0.0 6.6e-19 68.4 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|433590704|ref|YP_007280200.1| - 5.4e-19 68.3 0.0 1.3e-18 67.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|433590704|ref|YP_007280200.1| - 6.8e-09 35.4 0.2 1.3e-08 34.5 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|433590704|ref|YP_007280200.1| - 0.00065 18.7 0.0 0.0014 17.6 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Tautomerase PF01361.21 gi|433590706|ref|YP_007280202.1| - 3.1e-06 27.0 0.0 0.058 13.3 0.0 2.2 2 0 0 2 2 2 2 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|433590706|ref|YP_007280202.1| - 0.00014 21.8 0.0 0.047 13.8 0.0 2.1 1 1 1 2 2 2 2 Tautomerase enzyme Tautomerase_3 PF14832.6 gi|433590706|ref|YP_007280202.1| - 0.025 14.8 0.0 0.061 13.6 0.0 1.6 2 0 0 2 2 2 0 Putative oxalocrotonate tautomerase enzyme ArsA_ATPase PF02374.15 gi|433590707|ref|YP_007280203.1| - 2.7e-78 263.2 0.0 3.2e-51 174.3 0.0 2.3 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.23 gi|433590707|ref|YP_007280203.1| - 7.3e-08 32.5 0.0 1.2e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|433590707|ref|YP_007280203.1| - 7.5e-05 22.7 0.0 0.00013 21.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|433590707|ref|YP_007280203.1| - 0.0042 16.6 0.5 0.019 14.4 0.1 1.9 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|433590707|ref|YP_007280203.1| - 0.0061 16.1 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_25 PF13481.6 gi|433590707|ref|YP_007280203.1| - 0.016 14.8 1.8 0.17 11.5 0.3 2.5 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|433590707|ref|YP_007280203.1| - 0.025 14.0 0.0 0.054 12.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein RuvB_N PF05496.12 gi|433590707|ref|YP_007280203.1| - 0.13 12.0 0.0 0.31 10.8 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Fer4_NifH PF00142.18 gi|433590707|ref|YP_007280203.1| - 0.16 11.4 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|433590707|ref|YP_007280203.1| - 0.21 11.2 0.2 0.87 9.2 0.2 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Glyco_trans_2_3 PF13632.6 gi|433590708|ref|YP_007280204.1| - 5.1e-18 65.7 1.0 8.8e-18 64.9 1.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|433590708|ref|YP_007280204.1| - 1.8e-16 60.7 3.4 6.9e-16 58.8 3.4 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|433590708|ref|YP_007280204.1| - 1.5e-07 31.0 0.1 2.8e-07 30.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|433590708|ref|YP_007280204.1| - 0.00081 19.2 2.8 0.67 9.7 0.2 2.6 3 0 0 3 3 3 2 Glycosyl transferase family 2 Aminotran_1_2 PF00155.21 gi|433590709|ref|YP_007280205.1| - 2.5e-53 181.5 0.0 3e-53 181.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|433590709|ref|YP_007280205.1| - 2.3e-07 30.1 0.0 4.2e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|433590709|ref|YP_007280205.1| - 6.4e-07 28.9 0.0 1e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_MocR PF12897.7 gi|433590709|ref|YP_007280205.1| - 5.2e-06 25.5 0.8 1e-05 24.6 0.6 1.5 2 0 0 2 2 2 1 Alanine-glyoxylate amino-transferase Alliinase_C PF04864.13 gi|433590709|ref|YP_007280205.1| - 0.00023 20.2 0.0 0.00032 19.7 0.0 1.2 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|433590709|ref|YP_007280205.1| - 0.00049 18.7 0.0 0.00069 18.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|433590709|ref|YP_007280205.1| - 0.0017 17.1 0.0 0.0024 16.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-III DegT_DnrJ_EryC1 PF01041.17 gi|433590709|ref|YP_007280205.1| - 0.0017 17.8 0.2 0.0031 16.9 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF4127 PF13552.6 gi|433590709|ref|YP_007280205.1| - 0.012 14.2 0.1 0.019 13.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) HRDC PF00570.23 gi|433590709|ref|YP_007280205.1| - 0.03 14.3 0.1 7.8 6.6 0.0 3.4 3 0 0 3 3 3 0 HRDC domain 5-nucleotidase PF06189.12 gi|433590709|ref|YP_007280205.1| - 0.11 11.5 0.5 0.49 9.3 0.2 2.0 2 0 0 2 2 2 0 5'-nucleotidase CinA PF02464.17 gi|433590710|ref|YP_007280206.1| - 8e-57 191.1 0.1 9e-57 191.0 0.1 1.0 1 0 0 1 1 1 1 Competence-damaged protein YdjM PF04307.14 gi|433590711|ref|YP_007280207.1| - 2.1e-11 43.5 4.2 2.1e-10 40.2 4.2 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase IlvGEDA_leader PF08046.11 gi|433590711|ref|YP_007280207.1| - 0.042 13.3 0.4 0.11 11.9 0.0 1.9 2 0 0 2 2 2 0 IlvGEDA operon leader peptide Multi_Drug_Res PF00893.19 gi|433590712|ref|YP_007280208.1| - 2.4e-26 92.2 5.2 3.1e-26 91.9 5.2 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein CD20 PF04103.15 gi|433590712|ref|YP_007280208.1| - 0.046 13.8 4.8 0.061 13.4 4.8 1.2 1 0 0 1 1 1 0 CD20-like family EamA PF00892.20 gi|433590712|ref|YP_007280208.1| - 0.33 11.1 9.9 1.2 9.3 9.5 1.8 1 1 0 1 1 1 0 EamA-like transporter family LapA_dom PF06305.11 gi|433590712|ref|YP_007280208.1| - 8.7 6.2 6.8 0.72 9.7 1.0 2.1 1 1 1 2 2 2 0 Lipopolysaccharide assembly protein A domain CPBP PF02517.16 gi|433590715|ref|YP_007280211.1| - 1.9e-05 25.0 2.7 2.9e-05 24.4 0.1 2.1 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease AI-2E_transport PF01594.16 gi|433590716|ref|YP_007280212.1| - 1.6e-44 152.4 26.7 2e-44 152.1 26.7 1.0 1 0 0 1 1 1 1 AI-2E family transporter Na_H_antiporter PF03553.14 gi|433590717|ref|YP_007280213.1| - 5.6e-63 213.0 37.1 6.9e-57 193.0 15.1 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Nre_N PF04894.12 gi|433590719|ref|YP_007280215.1| - 1.4e-96 323.5 0.0 1.7e-96 323.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|433590719|ref|YP_007280215.1| - 1.1e-41 141.1 0.1 2.2e-41 140.2 0.1 1.5 1 0 0 1 1 1 1 Archaeal Nre, C-terminal LRR_10 PF18805.1 gi|433590719|ref|YP_007280215.1| - 0.18 11.5 1.4 0.57 9.9 1.4 1.8 1 0 0 1 1 1 0 Leucine-rich repeat DUF1610 PF07754.11 gi|433590721|ref|YP_007280217.1| - 2.1e-07 30.8 11.3 7.7e-07 29.0 4.9 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) C1_2 PF03107.16 gi|433590721|ref|YP_007280217.1| - 0.0013 19.0 11.1 0.066 13.5 0.5 2.2 1 1 1 2 2 2 2 C1 domain Rhodanese_C PF12368.8 gi|433590721|ref|YP_007280217.1| - 0.003 17.9 8.4 0.0033 17.8 8.4 1.1 1 0 0 1 1 1 1 Rhodanase C-terminal zf-ACC PF17848.1 gi|433590721|ref|YP_007280217.1| - 0.0073 16.4 0.2 0.0073 16.4 0.2 3.8 3 1 1 4 4 4 1 Acetyl-coA carboxylase zinc finger domain zf-Mss51 PF13824.6 gi|433590721|ref|YP_007280217.1| - 0.0073 16.4 11.7 1.1 9.5 2.5 2.9 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 DZR PF12773.7 gi|433590721|ref|YP_007280217.1| - 0.016 15.2 13.7 0.19 11.7 13.7 2.3 1 1 0 1 1 1 0 Double zinc ribbon zf-CHY PF05495.12 gi|433590721|ref|YP_007280217.1| - 0.019 15.5 10.2 0.27 11.7 7.5 2.0 1 1 1 2 2 2 0 CHY zinc finger C1_1 PF00130.22 gi|433590721|ref|YP_007280217.1| - 0.019 14.8 0.4 0.019 14.8 0.4 2.4 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.19 gi|433590721|ref|YP_007280217.1| - 0.051 13.6 10.9 0.13 12.2 0.7 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|433590721|ref|YP_007280217.1| - 0.054 13.4 5.8 0.054 13.4 5.8 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn_Tnp_IS91 PF14319.6 gi|433590721|ref|YP_007280217.1| - 0.054 13.5 8.8 0.09 12.8 8.8 1.4 1 1 0 1 1 1 0 Transposase zinc-binding domain Zn_ribbon_SprT PF17283.2 gi|433590721|ref|YP_007280217.1| - 0.072 13.0 15.6 9.7 6.2 0.1 4.0 3 1 0 3 3 3 0 SprT-like zinc ribbon domain zf-UBP PF02148.19 gi|433590721|ref|YP_007280217.1| - 0.076 13.3 0.6 0.076 13.3 0.6 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein HscB_4_cys PF18256.1 gi|433590721|ref|YP_007280217.1| - 0.083 12.7 1.5 0.083 12.7 1.5 2.9 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif DNA_RNApol_7kD PF03604.13 gi|433590721|ref|YP_007280217.1| - 0.083 12.6 11.2 1.4 8.7 1.0 3.1 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc-ribbons_6 PF07191.12 gi|433590721|ref|YP_007280217.1| - 0.089 12.8 11.0 2.9 7.9 10.9 2.0 1 1 0 1 1 1 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|433590721|ref|YP_007280217.1| - 0.094 12.2 15.7 0.36 10.3 4.1 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zf-MYND PF01753.18 gi|433590721|ref|YP_007280217.1| - 0.11 12.6 8.7 2.9 8.0 3.0 2.3 2 1 0 2 2 2 0 MYND finger Zn-ribbon_8 PF09723.10 gi|433590721|ref|YP_007280217.1| - 0.12 12.5 18.8 8 6.7 13.9 3.7 1 1 2 3 3 3 0 Zinc ribbon domain PolC_DP2 PF03833.13 gi|433590721|ref|YP_007280217.1| - 0.13 10.1 6.6 0.14 10.0 6.6 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc_ribbon_2 PF13240.6 gi|433590721|ref|YP_007280217.1| - 0.19 11.5 14.7 0.37 10.6 0.3 3.9 2 2 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|433590721|ref|YP_007280217.1| - 0.19 11.4 15.1 0.66 9.6 0.4 3.9 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|433590721|ref|YP_007280217.1| - 0.34 10.7 16.2 2.5 7.9 3.2 3.9 2 2 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|433590721|ref|YP_007280217.1| - 0.41 10.8 13.4 1.6 8.9 0.1 3.5 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 NMD3 PF04981.13 gi|433590721|ref|YP_007280217.1| - 0.43 10.0 8.4 0.46 9.9 8.4 1.0 1 0 0 1 1 1 0 NMD3 family NMDAR2_C PF10565.9 gi|433590721|ref|YP_007280217.1| - 0.57 9.0 7.3 0.61 8.9 7.3 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus zf-C2HC5 PF06221.13 gi|433590721|ref|YP_007280217.1| - 0.66 10.0 10.2 0.45 10.5 5.3 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-C2H2 PF00096.26 gi|433590721|ref|YP_007280217.1| - 0.72 10.4 14.8 3.7 8.2 0.3 3.7 4 0 0 4 4 4 0 Zinc finger, C2H2 type zinc_ribbon_10 PF10058.9 gi|433590721|ref|YP_007280217.1| - 0.77 9.5 13.0 62 3.4 3.7 3.7 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-UBR PF02207.20 gi|433590721|ref|YP_007280217.1| - 0.98 9.6 11.7 27 5.0 11.7 2.5 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) Zn_Tnp_IS1595 PF12760.7 gi|433590721|ref|YP_007280217.1| - 1.1 9.2 17.5 55 3.8 0.1 3.6 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-HIT PF04438.16 gi|433590721|ref|YP_007280217.1| - 1.2 9.1 16.1 6.8 6.7 2.1 3.5 1 1 0 2 2 2 0 HIT zinc finger zf-AN1 PF01428.16 gi|433590721|ref|YP_007280217.1| - 1.3 9.3 11.4 4.6 7.5 1.4 2.6 1 1 0 2 2 2 0 AN1-like Zinc finger zf-C2H2_11 PF16622.5 gi|433590721|ref|YP_007280217.1| - 1.3 8.8 9.8 10 6.0 0.1 3.8 3 1 1 4 4 4 0 zinc-finger C2H2-type DUF2387 PF09526.10 gi|433590721|ref|YP_007280217.1| - 1.8 8.8 10.9 1.6 8.9 0.2 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) YhfH PF14149.6 gi|433590721|ref|YP_007280217.1| - 2 8.5 15.7 27 4.8 0.1 3.4 1 1 2 3 3 3 0 YhfH-like protein zf-dskA_traR PF01258.17 gi|433590721|ref|YP_007280217.1| - 2.9 7.9 13.6 1.2 9.1 0.5 3.6 3 1 1 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger NRDD PF13597.6 gi|433590721|ref|YP_007280217.1| - 3.6 6.2 10.0 2.8 6.6 0.5 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-C6H2 PF15801.5 gi|433590721|ref|YP_007280217.1| - 4.1 7.8 10.8 8.5 6.8 2.1 2.6 1 1 1 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding EF1_GNE PF00736.19 gi|433590722|ref|YP_007280218.1| - 2.5e-18 66.0 0.0 2.8e-18 65.9 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain Lactamase_B PF00753.27 gi|433590724|ref|YP_007280220.1| - 2.9e-24 86.2 7.5 3.9e-24 85.8 7.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433590724|ref|YP_007280220.1| - 3.8e-06 26.5 0.4 8.6e-06 25.4 0.2 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|433590724|ref|YP_007280220.1| - 0.0033 16.9 0.0 0.0044 16.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Terpene_synth_C PF03936.16 gi|433590725|ref|YP_007280221.1| - 0.1 11.9 0.0 5.2 6.3 0.0 2.2 2 0 0 2 2 2 0 Terpene synthase family, metal binding domain Cys_Met_Meta_PP PF01053.20 gi|433590726|ref|YP_007280222.1| - 1.1e-153 511.4 0.0 1.2e-153 511.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|433590726|ref|YP_007280222.1| - 3.2e-05 23.1 0.0 4.9e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 gi|433590726|ref|YP_007280222.1| - 0.00097 17.8 0.0 0.0015 17.2 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase DegT_DnrJ_EryC1 PF01041.17 gi|433590726|ref|YP_007280222.1| - 0.0018 17.7 0.1 0.0045 16.4 0.1 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family BRK PF07533.16 gi|433590726|ref|YP_007280222.1| - 0.097 12.3 0.0 3.3 7.4 0.0 2.5 2 0 0 2 2 2 0 BRK domain DUF655 PF04919.12 gi|433590727|ref|YP_007280223.1| - 3.1e-63 213.0 0.1 3.8e-63 212.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|433590727|ref|YP_007280223.1| - 0.00072 19.8 0.0 0.0013 18.9 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|433590727|ref|YP_007280223.1| - 0.0036 17.5 0.0 0.0067 16.7 0.0 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|433590727|ref|YP_007280223.1| - 0.28 11.8 0.9 1.9 9.1 0.4 2.5 2 1 0 2 2 2 0 Helix-hairpin-helix domain AA_permease_2 PF13520.6 gi|433590728|ref|YP_007280224.1| - 6.7e-48 163.6 34.7 8.4e-48 163.2 34.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|433590728|ref|YP_007280224.1| - 2.7e-34 118.6 36.5 4e-34 118.0 36.5 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|433590728|ref|YP_007280224.1| - 3e-07 30.4 3.0 3e-07 30.4 3.0 3.4 4 0 0 4 4 4 1 C-terminus of AA_permease Meckelin PF09773.9 gi|433590728|ref|YP_007280224.1| - 0.061 11.4 0.3 0.097 10.7 0.3 1.2 1 0 0 1 1 1 0 Meckelin (Transmembrane protein 67) DUF4448 PF14610.6 gi|433590728|ref|YP_007280224.1| - 0.25 11.1 0.3 5.9 6.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4448) RNA_pol_Rpb4 PF03874.16 gi|433590729|ref|YP_007280225.1| - 2.9e-12 47.0 0.7 3.5e-12 46.7 0.7 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 CRR7 PF12095.8 gi|433590729|ref|YP_007280225.1| - 0.024 15.1 2.8 1.3 9.5 0.2 2.2 1 1 1 2 2 2 0 Protein CHLORORESPIRATORY REDUCTION 7 DUF1507 PF07408.11 gi|433590729|ref|YP_007280225.1| - 0.081 12.8 0.0 0.66 9.9 0.0 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1507) Cytokin_check_N PF10407.9 gi|433590729|ref|YP_007280225.1| - 0.086 12.8 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Cdc14 phosphatase binding protein N-terminus Gluconate_2-dh3 PF13618.6 gi|433590729|ref|YP_007280225.1| - 0.13 12.5 2.2 0.78 10.0 0.1 2.5 1 1 2 3 3 3 0 Gluconate 2-dehydrogenase subunit 3 Ribosomal_L21e PF01157.18 gi|433590730|ref|YP_007280226.1| - 6.8e-31 106.1 0.1 7.6e-31 106.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RrnaAD PF00398.20 gi|433590731|ref|YP_007280227.1| - 5.5e-47 160.1 0.0 7e-47 159.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|433590731|ref|YP_007280227.1| - 0.00023 21.8 0.0 0.00045 20.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433590731|ref|YP_007280227.1| - 0.005 17.5 0.0 0.01 16.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433590731|ref|YP_007280227.1| - 0.0077 17.0 0.0 0.016 15.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|433590731|ref|YP_007280227.1| - 0.083 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_23 PF13489.6 gi|433590731|ref|YP_007280227.1| - 0.089 12.6 0.0 0.096 12.5 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Spermine_synth PF01564.17 gi|433590731|ref|YP_007280227.1| - 0.22 10.9 0.0 0.37 10.2 0.0 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase domain MS_channel PF00924.18 gi|433590732|ref|YP_007280228.1| - 1.5e-49 168.3 0.2 2.4e-49 167.7 0.2 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF1211 PF06736.11 gi|433590732|ref|YP_007280228.1| - 0.13 12.8 1.6 5 7.6 1.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1211) DUF4083 PF13314.6 gi|433590732|ref|YP_007280228.1| - 0.2 11.6 5.1 0.93 9.5 1.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) TctB PF07331.11 gi|433590732|ref|YP_007280228.1| - 0.5 10.6 16.0 0.23 11.7 9.7 2.3 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family Methyltransf_25 PF13649.6 gi|433590733|ref|YP_007280229.1| - 5.1e-09 36.7 0.0 4.1e-08 33.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433590733|ref|YP_007280229.1| - 9.8e-09 35.8 0.1 1.2e-07 32.3 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|433590733|ref|YP_007280229.1| - 3e-08 33.4 0.0 1.2e-06 28.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|433590733|ref|YP_007280229.1| - 6e-05 22.9 0.0 9e-05 22.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433590733|ref|YP_007280229.1| - 0.00061 19.7 0.1 0.003 17.4 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433590733|ref|YP_007280229.1| - 0.00083 20.1 0.0 0.017 15.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain UPF0146 PF03686.13 gi|433590733|ref|YP_007280229.1| - 0.0016 18.3 0.0 0.0027 17.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) PrmA PF06325.13 gi|433590733|ref|YP_007280229.1| - 0.0021 17.5 0.1 0.0037 16.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_3 PF01596.17 gi|433590733|ref|YP_007280229.1| - 0.025 13.7 0.0 0.091 11.9 0.0 1.7 2 0 0 2 2 2 0 O-methyltransferase PCMT PF01135.19 gi|433590733|ref|YP_007280229.1| - 0.03 14.1 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|433590733|ref|YP_007280229.1| - 0.036 13.6 0.0 0.055 13.1 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|433590733|ref|YP_007280229.1| - 0.057 12.7 0.0 0.19 11.0 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|433590733|ref|YP_007280229.1| - 0.083 12.9 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|433590733|ref|YP_007280229.1| - 0.096 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein DUF938 PF06080.12 gi|433590733|ref|YP_007280229.1| - 0.22 11.3 0.0 0.38 10.5 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF938) Meth_synt_1 PF08267.12 gi|433590734|ref|YP_007280230.1| - 1.4e-13 51.1 0.0 1e-12 48.2 0.0 1.9 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|433590734|ref|YP_007280230.1| - 6e-13 48.8 0.1 8.4e-13 48.3 0.1 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_2 PF01717.18 gi|433590735|ref|YP_007280231.1| - 2e-58 198.2 0.0 2.7e-58 197.8 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|433590735|ref|YP_007280231.1| - 3.5e-14 53.0 0.1 6.7e-14 52.1 0.0 1.4 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|433590735|ref|YP_007280231.1| - 0.00019 20.7 0.0 0.00026 20.3 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) YbaB_DNA_bd PF02575.16 gi|433590735|ref|YP_007280231.1| - 0.095 12.9 0.0 0.9 9.8 0.0 2.6 2 1 0 2 2 2 0 YbaB/EbfC DNA-binding family GFO_IDH_MocA PF01408.22 gi|433590737|ref|YP_007280233.1| - 1.3e-15 58.3 0.0 2.4e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|433590737|ref|YP_007280233.1| - 4.3e-12 46.1 0.3 5.9e-11 42.4 0.3 2.3 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 4HBT_2 PF13279.6 gi|433590738|ref|YP_007280234.1| - 1.8e-10 41.3 0.0 2.7e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|433590738|ref|YP_007280234.1| - 5.8e-10 39.4 0.3 9.7e-10 38.7 0.3 1.4 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|433590738|ref|YP_007280234.1| - 0.0035 16.7 0.0 0.0098 15.2 0.0 1.6 1 1 1 2 2 2 1 Acyl-ACP thioesterase DUF4929 PF16283.5 gi|433590738|ref|YP_007280234.1| - 0.11 11.5 0.2 0.15 11.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4929) HD PF01966.22 gi|433590740|ref|YP_007280236.1| - 5.1e-12 46.1 1.6 1.1e-11 45.1 1.6 1.6 1 0 0 1 1 1 1 HD domain TrkA_C PF02080.21 gi|433590741|ref|YP_007280237.1| - 2e-19 69.2 0.1 6.6e-19 67.5 0.0 1.8 2 0 0 2 2 2 1 TrkA-C domain Castor_Poll_mid PF06241.12 gi|433590741|ref|YP_007280237.1| - 0.13 12.2 0.0 0.33 10.9 0.0 1.6 2 0 0 2 2 2 0 Castor and Pollux, part of voltage-gated ion channel Na_H_Exchanger PF00999.21 gi|433590742|ref|YP_007280238.1| - 3.9e-46 157.6 50.3 5.3e-46 157.1 50.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF5592 PF17332.2 gi|433590742|ref|YP_007280238.1| - 4.8 7.8 9.9 1.8 9.2 0.3 4.1 4 0 0 4 4 4 0 Family of unknown function (DUF5592) Amidohydro_1 PF01979.20 gi|433590743|ref|YP_007280239.1| - 1.5e-27 96.8 0.0 4.7e-18 65.6 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|433590743|ref|YP_007280239.1| - 7.1e-07 28.8 0.0 9.9e-07 28.4 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|433590743|ref|YP_007280239.1| - 5.3e-05 22.9 1.8 0.0012 18.4 0.1 2.5 2 1 0 2 2 2 2 Amidohydrolase family Hexapep PF00132.24 gi|433590744|ref|YP_007280240.1| - 3.4e-16 58.2 5.0 2.6e-06 26.9 0.9 3.3 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|433590744|ref|YP_007280240.1| - 2.2e-06 27.3 7.3 1e-05 25.1 0.7 3.2 2 1 1 3 3 3 1 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|433590744|ref|YP_007280240.1| - 0.018 14.0 0.0 0.03 13.2 0.0 1.4 1 1 0 1 1 1 0 L-fucokinase DUF3006 PF11213.8 gi|433590745|ref|YP_007280241.1| - 1.6e-10 41.0 1.5 2.1e-06 27.9 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3006) NdhS PF11623.8 gi|433590745|ref|YP_007280241.1| - 0.19 11.4 0.0 0.34 10.6 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H dehydrogenase subunit S Lactamase_B PF00753.27 gi|433590746|ref|YP_007280242.1| - 9.8e-09 35.5 15.5 1.4e-08 35.0 12.1 2.5 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433590746|ref|YP_007280242.1| - 1.2e-06 28.2 0.5 1.7e-06 27.7 0.5 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|433590746|ref|YP_007280242.1| - 0.0027 17.2 0.0 0.0058 16.1 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain OsmC PF02566.19 gi|433590747|ref|YP_007280243.1| - 1.9e-10 41.1 0.0 2.4e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein YdjM PF04307.14 gi|433590749|ref|YP_007280245.1| - 2.2e-10 40.1 15.8 3.3e-10 39.5 15.8 1.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Lactamase_B_3 PF13483.6 gi|433590750|ref|YP_007280246.1| - 2.1e-19 70.0 0.2 2.8e-19 69.6 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|433590750|ref|YP_007280246.1| - 1.9e-16 60.2 1.2 3.1e-16 59.5 0.6 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|433590750|ref|YP_007280246.1| - 1.5e-09 38.1 1.7 1.5e-09 38.1 1.7 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Ribosomal_L12_N PF16320.5 gi|433590750|ref|YP_007280246.1| - 0.0084 15.8 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L7/L12 dimerisation domain Cupin_6 PF12852.7 gi|433590750|ref|YP_007280246.1| - 0.16 11.7 0.4 0.84 9.3 0.0 2.0 2 0 0 2 2 2 0 Cupin tRNA_anti-codon PF01336.25 gi|433590752|ref|YP_007280248.1| - 2.6e-09 36.9 0.0 5.5e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|433590752|ref|YP_007280248.1| - 5.9e-08 32.9 0.0 1.9e-07 31.3 0.0 2.0 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|433590752|ref|YP_007280248.1| - 3e-05 24.1 0.0 7e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1_2 PF13509.6 gi|433590752|ref|YP_007280248.1| - 0.011 15.7 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 0 S1 domain Sporozoite_P67 PF05642.11 gi|433590752|ref|YP_007280248.1| - 0.32 9.0 8.2 0.45 8.5 8.2 1.2 1 0 0 1 1 1 0 Sporozoite P67 surface antigen SDA1 PF05285.12 gi|433590752|ref|YP_007280248.1| - 5.2 6.4 13.4 8.7 5.7 13.4 1.3 1 0 0 1 1 1 0 SDA1 Lin-8 PF03353.15 gi|433590752|ref|YP_007280248.1| - 7.7 6.0 6.9 13 5.3 6.9 1.3 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist SHOCT PF09851.9 gi|433590753|ref|YP_007280249.1| - 1.7e-09 37.1 5.5 3e-09 36.3 5.5 1.4 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.12 gi|433590753|ref|YP_007280249.1| - 0.0047 16.9 3.7 0.0071 16.3 3.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein G DUF1707 PF08044.11 gi|433590753|ref|YP_007280249.1| - 0.0071 16.4 4.8 0.013 15.5 4.8 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF3099 PF11298.8 gi|433590753|ref|YP_007280249.1| - 0.035 14.3 0.6 0.056 13.6 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) GT87 PF09594.10 gi|433590753|ref|YP_007280249.1| - 0.056 13.2 3.7 0.078 12.7 3.7 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 87 TPK_catalytic PF04263.16 gi|433590753|ref|YP_007280249.1| - 0.089 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain PhaG_MnhG_YufB PF03334.14 gi|433590754|ref|YP_007280250.1| - 1.1e-24 86.5 6.1 1.4e-24 86.2 6.1 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|433590755|ref|YP_007280251.1| - 1.7e-17 63.5 12.1 1.7e-17 63.5 12.1 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) CoA_transf_3 PF02515.17 gi|433590755|ref|YP_007280251.1| - 0.036 13.2 0.2 0.036 13.2 0.2 1.1 1 0 0 1 1 1 0 CoA-transferase family III DUF5336 PF17270.2 gi|433590755|ref|YP_007280251.1| - 0.14 11.8 5.6 0.16 11.6 5.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5336) DUF4013 PF13197.6 gi|433590755|ref|YP_007280251.1| - 0.52 10.1 11.4 1.1 9.1 11.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4013) MNHE PF01899.16 gi|433590756|ref|YP_007280252.1| - 8.5e-39 132.6 0.3 9.9e-39 132.4 0.3 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 gi|433590757|ref|YP_007280253.1| - 2e-45 155.2 16.8 1.3e-23 83.6 6.4 2.4 2 0 0 2 2 2 2 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|433590757|ref|YP_007280253.1| - 0.00068 19.1 5.4 0.00068 19.1 5.4 2.5 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|433590757|ref|YP_007280253.1| - 0.0012 18.9 0.0 0.0047 17.0 0.0 2.1 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|433590758|ref|YP_007280254.1| - 2.6e-29 100.9 1.1 3.3e-29 100.6 1.1 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EIIBC-GUT_C PF07663.11 gi|433590758|ref|YP_007280254.1| - 0.26 11.5 3.4 0.19 11.9 0.8 1.9 1 1 1 2 2 2 0 Sorbitol phosphotransferase enzyme II C-terminus MnhB PF04039.13 gi|433590759|ref|YP_007280255.1| - 5.5e-34 117.2 9.8 7e-34 116.8 9.8 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter IncD PF17628.2 gi|433590759|ref|YP_007280255.1| - 4.3 7.1 8.4 0.29 10.9 1.1 2.2 2 1 0 2 2 2 0 Inclusion membrane protein D Proton_antipo_M PF00361.20 gi|433590760|ref|YP_007280256.1| - 5.7e-69 232.5 15.1 5.7e-69 232.5 15.1 2.9 3 0 0 3 3 3 1 Proton-conducting membrane transporter DUF4040 PF13244.6 gi|433590760|ref|YP_007280256.1| - 2e-16 59.9 10.5 2e-16 59.9 10.5 5.3 8 0 0 8 8 8 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 gi|433590760|ref|YP_007280256.1| - 1.2e-10 41.3 0.3 1.2e-10 41.3 0.3 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Radical_SAM_C PF16199.5 gi|433590761|ref|YP_007280257.1| - 1.4e-25 89.1 0.0 2.7e-25 88.2 0.0 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|433590761|ref|YP_007280257.1| - 3.4e-25 89.3 0.0 7.1e-25 88.3 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|433590761|ref|YP_007280257.1| - 9.3e-09 35.5 0.0 2.6e-08 34.1 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|433590761|ref|YP_007280257.1| - 1.8e-05 24.7 0.1 4.3e-05 23.5 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|433590761|ref|YP_007280257.1| - 0.074 13.5 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF2157 PF09925.9 gi|433590762|ref|YP_007280258.1| - 1.6 8.5 6.4 10 5.9 6.4 2.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) CbtB PF09489.10 gi|433590762|ref|YP_007280258.1| - 8.6 6.6 11.2 1.6 8.9 1.5 3.0 2 1 1 3 3 3 0 Probable cobalt transporter subunit (CbtB) Zip PF02535.22 gi|433590763|ref|YP_007280259.1| - 9.8e-14 51.3 18.5 4.3e-13 49.2 7.3 2.1 2 0 0 2 2 2 2 ZIP Zinc transporter FbpA PF05833.11 gi|433590765|ref|YP_007280261.1| - 4.7e-78 263.0 0.0 8.5e-78 262.1 0.0 1.4 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|433590765|ref|YP_007280261.1| - 4.3e-22 78.8 0.0 8.4e-22 77.9 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|433590765|ref|YP_007280261.1| - 0.001 19.2 0.0 0.0029 17.8 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain DUF5590 PF17881.1 gi|433590765|ref|YP_007280261.1| - 0.15 12.1 0.1 0.63 10.2 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5590) THOC7 PF05615.13 gi|433590765|ref|YP_007280261.1| - 4.4 7.6 9.7 5.2 7.4 1.5 2.4 2 0 0 2 2 2 0 Tho complex subunit 7 Pyr_redox_2 PF07992.14 gi|433590766|ref|YP_007280262.1| - 4.2e-40 137.8 1.6 5e-40 137.6 1.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|433590766|ref|YP_007280262.1| - 1e-20 74.0 1.5 5.3e-18 65.4 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|433590766|ref|YP_007280262.1| - 4.8e-17 62.2 0.1 1e-12 47.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|433590766|ref|YP_007280262.1| - 2.2e-09 36.9 9.6 5e-05 22.6 0.3 4.3 4 1 1 5 5 5 3 FAD binding domain FAD_oxidored PF12831.7 gi|433590766|ref|YP_007280262.1| - 4.5e-06 26.3 0.4 6.7e-05 22.4 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|433590766|ref|YP_007280262.1| - 7.6e-06 26.1 0.1 7.6e-05 22.9 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|433590766|ref|YP_007280262.1| - 1.3e-05 25.0 5.5 0.0014 18.3 0.3 3.7 3 1 1 4 4 4 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|433590766|ref|YP_007280262.1| - 5.1e-05 22.2 0.1 0.059 12.1 0.1 3.2 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.17 gi|433590766|ref|YP_007280262.1| - 6.4e-05 22.3 0.1 0.0027 17.0 0.1 2.3 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|433590766|ref|YP_007280262.1| - 0.00015 21.0 0.9 0.033 13.3 0.1 3.2 4 0 0 4 4 4 1 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|433590766|ref|YP_007280262.1| - 0.00036 20.9 0.1 0.0062 17.0 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|433590766|ref|YP_007280262.1| - 0.0039 16.5 1.4 0.078 12.3 0.3 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|433590766|ref|YP_007280262.1| - 0.0063 15.8 2.8 2 7.6 0.3 3.3 2 1 1 3 3 3 1 FAD binding domain Lycopene_cycl PF05834.12 gi|433590766|ref|YP_007280262.1| - 0.01 14.9 0.4 0.85 8.6 0.4 2.8 3 0 0 3 3 3 0 Lycopene cyclase protein K_oxygenase PF13434.6 gi|433590766|ref|YP_007280262.1| - 0.011 14.9 0.0 0.15 11.2 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) FMO-like PF00743.19 gi|433590766|ref|YP_007280262.1| - 0.17 10.2 0.0 3.5 6.0 0.0 2.0 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like MCRA PF06100.11 gi|433590766|ref|YP_007280262.1| - 0.24 10.2 0.1 0.46 9.2 0.1 1.4 2 0 0 2 2 2 0 MCRA family Thioredoxin PF00085.20 gi|433590767|ref|YP_007280263.1| - 3e-28 97.8 0.0 3.6e-28 97.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|433590767|ref|YP_007280263.1| - 5.2e-12 46.2 0.1 5.1e-10 39.8 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.6 gi|433590767|ref|YP_007280263.1| - 1.8e-06 28.1 0.0 3.2e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.6 gi|433590767|ref|YP_007280263.1| - 3.5e-06 27.2 0.0 0.0022 18.3 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like TraF PF13728.6 gi|433590767|ref|YP_007280263.1| - 1.2e-05 25.3 0.0 1.6e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|433590767|ref|YP_007280263.1| - 3.7e-05 23.5 0.0 4.4e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.11 gi|433590767|ref|YP_007280263.1| - 0.00031 20.7 0.0 0.00051 20.0 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE DSBA PF01323.20 gi|433590767|ref|YP_007280263.1| - 0.00035 20.4 0.3 0.004 16.9 0.0 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain OST3_OST6 PF04756.13 gi|433590767|ref|YP_007280263.1| - 0.0016 17.8 0.0 0.0021 17.5 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_3 PF13192.6 gi|433590767|ref|YP_007280263.1| - 0.0045 17.0 0.0 0.0059 16.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.21 gi|433590767|ref|YP_007280263.1| - 0.0053 16.7 0.0 0.013 15.4 0.0 1.6 1 1 0 1 1 1 1 AhpC/TSA family Glutaredoxin PF00462.24 gi|433590767|ref|YP_007280263.1| - 0.023 14.9 0.0 0.041 14.1 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin DUF836 PF05768.14 gi|433590767|ref|YP_007280263.1| - 0.034 14.6 0.0 0.041 14.3 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Redoxin PF08534.10 gi|433590767|ref|YP_007280263.1| - 0.089 12.5 0.1 0.35 10.6 0.1 1.7 1 1 1 2 2 2 0 Redoxin DIM1 PF02966.16 gi|433590767|ref|YP_007280263.1| - 0.097 12.4 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Mitosis protein DIM1 Thioredoxin_5 PF13743.6 gi|433590767|ref|YP_007280263.1| - 0.098 12.3 0.0 0.22 11.2 0.0 1.5 1 1 1 2 2 2 0 Thioredoxin Usp PF00582.26 gi|433590768|ref|YP_007280264.1| - 1.5e-33 116.3 1.8 1.7e-33 116.1 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family Con-6 PF10346.9 gi|433590768|ref|YP_007280264.1| - 0.026 14.5 0.1 0.043 13.9 0.1 1.3 1 0 0 1 1 1 0 Conidiation protein 6 Rhodanese PF00581.20 gi|433590769|ref|YP_007280265.1| - 5.3e-14 52.6 0.0 9.7e-14 51.8 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|433590769|ref|YP_007280265.1| - 2.9e-13 50.3 3.6 5.3e-13 49.4 3.6 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|433590769|ref|YP_007280265.1| - 0.03 14.2 0.1 0.05 13.5 0.1 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|433590769|ref|YP_007280265.1| - 0.066 12.7 0.4 0.15 11.5 0.4 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Pyridox_ox_2 PF12900.7 gi|433590770|ref|YP_007280266.1| - 3.4e-16 59.5 0.0 4e-16 59.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Usp PF00582.26 gi|433590771|ref|YP_007280267.1| - 1.4e-31 109.9 0.2 1.7e-31 109.6 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|433590771|ref|YP_007280267.1| - 0.02 14.8 0.1 0.028 14.3 0.1 1.2 1 0 0 1 1 1 0 Electron transfer flavoprotein domain CBS PF00571.28 gi|433590772|ref|YP_007280268.1| - 1.6e-24 86.1 5.8 7.7e-12 45.5 2.0 2.2 2 0 0 2 2 2 2 CBS domain GAF PF01590.26 gi|433590772|ref|YP_007280268.1| - 0.042 14.5 0.0 0.052 14.2 0.0 1.2 1 1 0 1 1 1 0 GAF domain NosL PF05573.12 gi|433590773|ref|YP_007280269.1| - 1e-46 158.5 0.3 1.2e-46 158.3 0.3 1.1 1 0 0 1 1 1 1 NosL TAT_signal PF10518.9 gi|433590773|ref|YP_007280269.1| - 0.011 15.6 4.1 0.017 14.9 4.1 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC2_membrane_2 PF12679.7 gi|433590774|ref|YP_007280270.1| - 2.9e-06 26.8 18.7 2.9e-06 26.8 18.7 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|433590774|ref|YP_007280270.1| - 0.0083 15.3 7.0 0.013 14.6 7.0 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|433590775|ref|YP_007280271.1| - 5.3e-26 91.8 0.0 7.5e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433590775|ref|YP_007280271.1| - 3.7e-17 63.1 0.0 8.9e-08 32.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|433590775|ref|YP_007280271.1| - 5.2e-05 22.8 0.0 0.19 11.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|433590775|ref|YP_007280271.1| - 0.00019 21.3 0.0 0.0038 17.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 gi|433590775|ref|YP_007280271.1| - 0.00046 20.5 0.2 0.001 19.3 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|433590775|ref|YP_007280271.1| - 0.00048 19.9 1.0 0.00071 19.3 0.8 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433590775|ref|YP_007280271.1| - 0.00086 19.7 0.1 0.0014 19.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|433590775|ref|YP_007280271.1| - 0.001 18.8 0.1 0.0018 18.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|433590775|ref|YP_007280271.1| - 0.0014 18.9 0.1 0.0033 17.7 0.1 1.7 1 1 1 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|433590775|ref|YP_007280271.1| - 0.0023 16.7 0.0 0.17 10.5 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|433590775|ref|YP_007280271.1| - 0.0035 17.9 0.0 0.0053 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|433590775|ref|YP_007280271.1| - 0.008 15.8 0.4 0.032 13.8 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|433590775|ref|YP_007280271.1| - 0.013 15.7 0.2 0.024 14.8 0.2 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|433590775|ref|YP_007280271.1| - 0.02 14.5 0.1 0.034 13.8 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|433590775|ref|YP_007280271.1| - 0.028 14.3 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|433590775|ref|YP_007280271.1| - 0.028 14.1 0.4 0.07 12.8 0.2 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|433590775|ref|YP_007280271.1| - 0.029 14.8 0.2 0.051 14.0 0.2 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|433590775|ref|YP_007280271.1| - 0.048 13.6 0.2 0.076 12.9 0.2 1.3 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|433590775|ref|YP_007280271.1| - 0.057 13.0 1.3 0.083 12.5 0.4 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.14 gi|433590775|ref|YP_007280271.1| - 0.06 13.4 0.2 0.12 12.4 0.2 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|433590775|ref|YP_007280271.1| - 0.13 12.8 0.0 0.62 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain NosD PF05048.13 gi|433590776|ref|YP_007280272.1| - 1e-26 93.7 1.9 2.2e-23 82.8 0.7 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|433590776|ref|YP_007280272.1| - 3.2e-18 66.1 5.3 3e-17 62.9 2.8 2.5 1 1 1 2 2 2 2 Right handed beta helix region NosL PF05573.12 gi|433590776|ref|YP_007280272.1| - 3.6e-18 66.2 0.4 6.8e-18 65.3 0.4 1.4 1 0 0 1 1 1 1 NosL DUF1565 PF07602.11 gi|433590776|ref|YP_007280272.1| - 4e-05 23.1 6.6 0.017 14.5 0.4 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.7 gi|433590776|ref|YP_007280272.1| - 0.0083 16.0 1.5 0.016 15.0 0.1 2.2 2 1 0 2 2 2 1 Pectate lyase superfamily protein DUF4781 PF16013.5 gi|433590777|ref|YP_007280273.1| - 0.2 10.4 0.8 0.22 10.3 0.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) DUF302 PF03625.14 gi|433590778|ref|YP_007280274.1| - 3.7e-17 62.0 0.0 6.4e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Methyltransf_11 PF08241.12 gi|433590779|ref|YP_007280275.1| - 4.6e-19 68.9 0.0 7.4e-19 68.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433590779|ref|YP_007280275.1| - 1.9e-16 60.5 0.1 4.8e-16 59.2 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433590779|ref|YP_007280275.1| - 9.2e-10 38.5 0.0 1.2e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433590779|ref|YP_007280275.1| - 4.3e-08 33.2 0.0 4.3e-07 29.9 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433590779|ref|YP_007280275.1| - 8.7e-06 26.4 0.0 1.6e-05 25.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433590779|ref|YP_007280275.1| - 2.8e-05 23.6 0.0 4.5e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|433590779|ref|YP_007280275.1| - 8.2e-05 21.8 0.0 0.00017 20.8 0.0 1.5 1 1 0 1 1 1 1 DREV methyltransferase FtsJ PF01728.19 gi|433590779|ref|YP_007280275.1| - 0.00013 22.2 0.0 0.00015 21.9 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|433590779|ref|YP_007280275.1| - 0.00039 19.6 0.0 0.00048 19.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.15 gi|433590779|ref|YP_007280275.1| - 0.0017 18.2 0.0 0.0051 16.7 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_2 PF00891.18 gi|433590779|ref|YP_007280275.1| - 0.0029 17.0 0.0 0.0035 16.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain MTS PF05175.14 gi|433590779|ref|YP_007280275.1| - 0.011 15.3 0.0 0.031 13.8 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase small domain DUF5131 PF07505.11 gi|433590779|ref|YP_007280275.1| - 0.026 14.0 0.0 0.078 12.4 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF5131) Methyltransf_32 PF13679.6 gi|433590779|ref|YP_007280275.1| - 0.19 11.7 0.0 0.36 10.8 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Cyt_bd_oxida_II PF02322.15 gi|433590781|ref|YP_007280277.1| - 5.1e-75 252.7 34.7 5.9e-75 252.4 34.7 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II Cyt_bd_oxida_I PF01654.17 gi|433590782|ref|YP_007280278.1| - 1.1e-141 472.3 26.8 1.3e-141 472.1 26.8 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Thioredoxin_4 PF13462.6 gi|433590783|ref|YP_007280279.1| - 8e-24 84.7 0.0 9.4e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|433590783|ref|YP_007280279.1| - 4.2e-12 46.5 0.1 1e-11 45.2 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|433590783|ref|YP_007280279.1| - 8.6e-12 45.2 0.4 6e-09 35.9 0.4 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.6 gi|433590783|ref|YP_007280279.1| - 0.00029 20.6 0.1 0.00049 19.8 0.0 1.4 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|433590783|ref|YP_007280279.1| - 0.079 13.3 0.0 2.5 8.5 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin-like GPHR_N PF12537.8 gi|433590784|ref|YP_007280280.1| - 1.8 8.7 10.2 5.8 7.1 0.4 3.4 2 2 1 3 3 3 0 The Golgi pH Regulator (GPHR) Family N-terminal MerT PF02411.15 gi|433590785|ref|YP_007280281.1| - 0.01 15.8 1.1 0.018 15.1 1.1 1.4 1 0 0 1 1 1 0 MerT mercuric transport protein DUF5313 PF17240.2 gi|433590785|ref|YP_007280281.1| - 0.16 12.4 0.0 0.38 11.2 0.0 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5313) HTH_20 PF12840.7 gi|433590786|ref|YP_007280282.1| - 4.2e-08 33.1 0.3 9.2e-08 32.0 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|433590786|ref|YP_007280282.1| - 5.4e-06 25.9 0.0 8.3e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FUR PF01475.19 gi|433590786|ref|YP_007280282.1| - 0.00042 20.4 0.1 0.00055 20.1 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_AsnC-type PF13404.6 gi|433590786|ref|YP_007280282.1| - 0.00089 19.0 0.1 0.0017 18.2 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|433590786|ref|YP_007280282.1| - 0.0013 18.6 0.1 0.0026 17.6 0.1 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|433590786|ref|YP_007280282.1| - 0.0032 17.3 0.0 0.0048 16.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|433590786|ref|YP_007280282.1| - 0.0068 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain CdiI_N PF18228.1 gi|433590786|ref|YP_007280282.1| - 0.015 15.1 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 CdiI N-terminal domain HTH_27 PF13463.6 gi|433590786|ref|YP_007280282.1| - 0.02 15.4 0.1 0.032 14.7 0.1 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|433590786|ref|YP_007280282.1| - 0.029 14.3 0.1 0.047 13.6 0.1 1.3 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|433590786|ref|YP_007280282.1| - 0.064 13.2 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Phage_rep_org_N PF09681.10 gi|433590786|ref|YP_007280282.1| - 0.066 13.1 0.0 0.091 12.7 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.9 gi|433590786|ref|YP_007280282.1| - 0.15 12.2 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF5381 PF17353.2 gi|433590787|ref|YP_007280283.1| - 0.72 9.6 2.7 0.7 9.6 1.8 1.5 1 1 0 1 1 1 0 Family of unknown function (DUF5381) DUF4229 PF14012.6 gi|433590787|ref|YP_007280283.1| - 1 9.5 7.2 1 9.5 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) TssN PF17555.2 gi|433590787|ref|YP_007280283.1| - 1.6 8.0 4.4 1.9 7.8 4.4 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF1418 PF07214.12 gi|433590787|ref|YP_007280283.1| - 2.3 8.1 5.6 10 6.0 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1418) TauE PF01925.19 gi|433590788|ref|YP_007280284.1| - 1.6e-15 57.4 31.6 1.6e-15 57.4 31.6 1.5 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE DUF4651 PF15513.6 gi|433590788|ref|YP_007280284.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4651) Thioredoxin PF00085.20 gi|433590789|ref|YP_007280285.1| - 3.3e-13 49.5 0.0 4e-13 49.2 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|433590789|ref|YP_007280285.1| - 0.0026 17.8 0.0 0.0036 17.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|433590789|ref|YP_007280285.1| - 0.0026 17.6 0.0 0.0034 17.3 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|433590789|ref|YP_007280285.1| - 0.0083 16.6 0.0 0.26 11.8 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain TrbC_Ftype PF09673.10 gi|433590789|ref|YP_007280285.1| - 0.019 15.0 0.0 0.022 14.8 0.0 1.1 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein Toprim_3 PF13362.6 gi|433590789|ref|YP_007280285.1| - 0.033 14.5 0.3 0.2 12.0 0.1 1.9 2 0 0 2 2 2 0 Toprim domain HyaE PF07449.11 gi|433590789|ref|YP_007280285.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.5 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE DUF836 PF05768.14 gi|433590789|ref|YP_007280285.1| - 0.22 11.9 0.0 0.26 11.7 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) TrmB PF01978.19 gi|433590790|ref|YP_007280286.1| - 7.6e-16 57.8 0.0 1e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|433590790|ref|YP_007280286.1| - 9.6e-05 22.1 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|433590790|ref|YP_007280286.1| - 0.00014 22.2 0.0 0.00019 21.7 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.22 gi|433590790|ref|YP_007280286.1| - 0.00015 21.6 0.4 0.00032 20.6 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_11 PF08279.12 gi|433590790|ref|YP_007280286.1| - 0.00034 20.5 0.0 0.00059 19.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|433590790|ref|YP_007280286.1| - 0.0011 18.5 0.1 0.0018 17.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433590790|ref|YP_007280286.1| - 0.0072 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433590790|ref|YP_007280286.1| - 0.011 15.6 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|433590790|ref|YP_007280286.1| - 0.015 15.8 0.0 0.025 15.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain 2OG-Fe_Oxy_2 PF10014.9 gi|433590790|ref|YP_007280286.1| - 0.017 14.9 0.3 0.021 14.6 0.3 1.2 1 0 0 1 1 1 0 2OG-Fe dioxygenase HTH_23 PF13384.6 gi|433590790|ref|YP_007280286.1| - 0.02 14.7 0.1 0.035 13.9 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Rio2_N PF09202.11 gi|433590790|ref|YP_007280286.1| - 0.025 14.8 0.3 0.096 12.9 0.3 1.9 1 1 0 1 1 1 0 Rio2, N-terminal RuvB_C PF05491.13 gi|433590790|ref|YP_007280286.1| - 0.032 14.1 0.0 0.056 13.3 0.0 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain VirArc_Nuclease PF12187.8 gi|433590790|ref|YP_007280286.1| - 0.046 13.3 0.0 0.066 12.8 0.0 1.2 1 0 0 1 1 1 0 Viral/Archaeal nuclease UMPH-1 PF05822.12 gi|433590790|ref|YP_007280286.1| - 0.049 13.1 0.2 0.068 12.7 0.2 1.3 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) DUF4423 PF14394.6 gi|433590790|ref|YP_007280286.1| - 0.058 13.1 0.0 0.17 11.6 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) Rrf2 PF02082.20 gi|433590790|ref|YP_007280286.1| - 0.097 13.0 0.0 0.3 11.5 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator HTH_38 PF13936.6 gi|433590790|ref|YP_007280286.1| - 0.12 12.1 0.1 0.27 11.0 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_S25 PF03297.15 gi|433590790|ref|YP_007280286.1| - 0.14 12.4 0.0 0.48 10.7 0.0 1.8 1 1 1 2 2 2 0 S25 ribosomal protein TauE PF01925.19 gi|433590791|ref|YP_007280287.1| - 3.7e-36 124.9 33.4 3.7e-36 124.9 33.4 1.6 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE Usp PF00582.26 gi|433590793|ref|YP_007280289.1| - 8.3e-40 136.6 1.3 4.9e-22 79.0 0.0 2.2 2 0 0 2 2 2 2 Universal stress protein family Ribul_P_3_epim PF00834.19 gi|433590793|ref|YP_007280289.1| - 0.16 11.4 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DUF1641 PF07849.11 gi|433590794|ref|YP_007280290.1| - 3.8e-16 58.7 3.9 1e-15 57.3 0.7 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1641) SNF PF00209.18 gi|433590795|ref|YP_007280291.1| - 2.3e-45 155.3 25.2 9e-24 84.0 4.3 2.4 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF1279 PF06916.13 gi|433590795|ref|YP_007280291.1| - 0.096 13.2 0.2 0.35 11.4 0.2 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1279) Cupin_2 PF07883.11 gi|433590796|ref|YP_007280292.1| - 2.5e-10 39.9 0.1 3.6e-10 39.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|433590796|ref|YP_007280292.1| - 3.6e-06 26.6 0.1 6.6e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) zinc_ribbon_6 PF14599.6 gi|433590796|ref|YP_007280292.1| - 0.0021 18.0 0.2 0.0059 16.6 0.3 1.7 1 1 1 2 2 2 1 Zinc-ribbon Zn-ribbon_8 PF09723.10 gi|433590796|ref|YP_007280292.1| - 0.0066 16.5 2.1 0.015 15.4 2.1 1.5 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|433590796|ref|YP_007280292.1| - 0.044 13.8 0.1 0.059 13.4 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|433590796|ref|YP_007280292.1| - 0.055 13.2 1.0 1.2 9.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|433590796|ref|YP_007280292.1| - 0.25 11.5 3.5 26 5.0 3.4 2.3 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-NADH-PPase PF09297.11 gi|433590796|ref|YP_007280292.1| - 0.31 10.7 0.1 0.31 10.7 0.1 2.3 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain PHO4 PF01384.20 gi|433590797|ref|YP_007280293.1| - 3.8e-44 151.1 29.1 3.8e-44 151.1 29.1 1.5 1 1 0 1 1 1 1 Phosphate transporter family Sulf_transp PF04143.14 gi|433590798|ref|YP_007280294.1| - 1.3e-09 38.1 5.7 1.3e-09 38.1 5.7 2.0 1 1 1 2 2 2 1 Sulphur transport Sulf_transp PF04143.14 gi|433590799|ref|YP_007280295.1| - 2e-10 40.7 17.9 8.2e-10 38.7 17.9 1.9 1 1 0 1 1 1 1 Sulphur transport UCR_UQCRX_QCR9 PF05365.12 gi|433590799|ref|YP_007280295.1| - 2.4 8.2 4.6 0.85 9.6 0.1 2.3 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like DUF4282 PF14110.6 gi|433590799|ref|YP_007280295.1| - 2.5 8.9 7.5 0.62 10.8 2.4 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4282) HRG PF16954.5 gi|433590799|ref|YP_007280295.1| - 6.8 7.2 11.1 0.86 10.1 0.5 3.3 3 0 0 3 3 3 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene Lactamase_B PF00753.27 gi|433590800|ref|YP_007280296.1| - 3.1e-11 43.7 6.5 6.4e-11 42.6 6.5 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|433590800|ref|YP_007280296.1| - 6.8e-10 39.4 0.0 1.3e-09 38.5 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|433590800|ref|YP_007280296.1| - 0.049 13.1 0.2 0.12 11.9 0.2 1.7 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|433590800|ref|YP_007280296.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain TusA PF01206.17 gi|433590801|ref|YP_007280297.1| - 9e-19 67.1 0.0 1e-18 66.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|433590801|ref|YP_007280297.1| - 0.082 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.6 gi|433590802|ref|YP_007280298.1| - 6e-52 175.6 0.6 7.6e-52 175.3 0.6 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|433590802|ref|YP_007280298.1| - 1.2e-06 28.9 0.0 4.2e-06 27.1 0.0 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family Dynamitin PF04912.14 gi|433590802|ref|YP_007280298.1| - 0.024 14.0 0.1 0.036 13.4 0.1 1.2 1 0 0 1 1 1 0 Dynamitin RRM_8 PF11835.8 gi|433590804|ref|YP_007280300.1| - 0.0016 18.6 0.1 0.0026 18.0 0.1 1.3 1 0 0 1 1 1 1 RRM-like domain eRF1_1 PF03463.15 gi|433590805|ref|YP_007280301.1| - 1.4e-25 89.8 0.1 2.3e-25 89.0 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|433590805|ref|YP_007280301.1| - 4.2e-23 82.0 0.2 1.9e-22 79.9 0.0 2.2 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|433590805|ref|YP_007280301.1| - 3.2e-10 40.4 0.3 3.9e-09 36.9 0.3 2.1 1 1 0 1 1 1 1 eRF1 domain 2 TrmB PF01978.19 gi|433590806|ref|YP_007280302.1| - 1.9e-20 72.5 0.0 3.4e-20 71.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|433590806|ref|YP_007280302.1| - 0.00042 19.6 0.1 0.00054 19.2 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB MarR_2 PF12802.7 gi|433590806|ref|YP_007280302.1| - 0.00048 20.0 0.1 0.001 18.9 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|433590806|ref|YP_007280302.1| - 0.00049 19.8 0.0 0.0012 18.6 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|433590806|ref|YP_007280302.1| - 0.00071 19.6 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.16 gi|433590806|ref|YP_007280302.1| - 0.0036 17.6 0.3 0.01 16.2 0.0 1.9 2 1 0 2 2 2 1 Penicillinase repressor HTH_27 PF13463.6 gi|433590806|ref|YP_007280302.1| - 0.0043 17.5 0.1 0.019 15.5 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|433590806|ref|YP_007280302.1| - 0.012 15.6 0.0 0.027 14.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_20 PF12840.7 gi|433590806|ref|YP_007280302.1| - 0.09 12.9 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MMPL PF03176.15 gi|433590807|ref|YP_007280303.1| - 6.9e-30 104.1 38.9 6.8e-20 71.3 7.7 3.6 3 1 0 3 3 3 2 MMPL family Sterol-sensing PF12349.8 gi|433590807|ref|YP_007280303.1| - 0.0001 22.2 14.3 0.0024 17.7 2.9 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|433590807|ref|YP_007280303.1| - 0.0001 21.7 6.8 0.0001 21.7 6.8 2.7 3 0 0 3 3 3 2 Protein export membrane protein Patched PF02460.18 gi|433590807|ref|YP_007280303.1| - 0.00094 17.4 30.0 0.0068 14.6 5.7 3.4 3 0 0 3 3 3 3 Patched family Chitin_synth_1N PF08407.11 gi|433590807|ref|YP_007280303.1| - 0.046 13.7 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Chitin synthase N-terminal RseC_MucC PF04246.12 gi|433590807|ref|YP_007280303.1| - 1.2 9.1 8.0 2.6 8.0 0.8 3.3 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Lactamase_B_2 PF12706.7 gi|433590808|ref|YP_007280304.1| - 1.5e-16 60.5 0.2 1.9e-16 60.2 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|433590808|ref|YP_007280304.1| - 9.3e-12 45.4 2.9 2.3e-11 44.1 2.9 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|433590808|ref|YP_007280304.1| - 0.022 14.6 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_4 PF13691.6 gi|433590808|ref|YP_007280304.1| - 0.13 11.9 0.0 1 9.1 0.0 2.2 2 0 0 2 2 2 0 tRNase Z endonuclease Lactamase_B_6 PF16661.5 gi|433590808|ref|YP_007280304.1| - 0.18 11.2 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain OATP PF03137.20 gi|433590809|ref|YP_007280305.1| - 1.1 7.4 3.2 1.3 7.2 3.2 1.0 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family Nmad3 PF18754.1 gi|433590810|ref|YP_007280306.1| - 1.4e-40 139.5 0.0 1.7e-40 139.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotide modification associated domain 3 HTH_20 PF12840.7 gi|433590811|ref|YP_007280307.1| - 0.00092 19.2 2.1 0.0018 18.3 2.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain DprA_WH PF17782.1 gi|433590811|ref|YP_007280307.1| - 0.0055 16.8 1.3 0.012 15.7 1.3 1.6 1 1 0 1 1 1 1 DprA winged helix domain HTH_42 PF06224.12 gi|433590811|ref|YP_007280307.1| - 0.0074 15.9 0.5 0.0083 15.7 0.5 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|433590811|ref|YP_007280307.1| - 0.014 14.9 0.0 0.038 13.6 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433590811|ref|YP_007280307.1| - 0.021 14.6 0.9 0.039 13.8 0.9 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Hexapep PF00132.24 gi|433590812|ref|YP_007280308.1| - 4.4e-08 32.5 0.7 4.4e-08 32.5 0.7 3.0 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|433590812|ref|YP_007280308.1| - 2.7e-07 30.2 0.9 2.7e-07 30.2 0.9 2.9 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase Pyr_redox_2 PF07992.14 gi|433590813|ref|YP_007280309.1| - 4.4e-40 137.8 0.2 5.3e-40 137.5 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|433590813|ref|YP_007280309.1| - 5.6e-10 39.6 0.6 2.2e-08 34.6 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|433590813|ref|YP_007280309.1| - 0.018 14.4 0.7 4.3 6.6 0.3 2.8 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain HTH_40 PF14493.6 gi|433590813|ref|YP_007280309.1| - 0.09 13.2 0.2 0.26 11.8 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Spore_SspJ PF09575.10 gi|433590813|ref|YP_007280309.1| - 0.16 12.3 3.0 0.72 10.3 0.1 2.9 3 0 0 3 3 3 0 Small spore protein J (Spore_SspJ) GIDA PF01134.22 gi|433590813|ref|YP_007280309.1| - 1.2 8.2 3.8 12 4.8 0.0 2.9 3 0 0 3 3 3 0 Glucose inhibited division protein A Arginase PF00491.21 gi|433590814|ref|YP_007280310.1| - 7.3e-78 261.9 0.7 8.4e-78 261.7 0.7 1.0 1 0 0 1 1 1 1 Arginase family Fe_dep_repr_C PF02742.15 gi|433590815|ref|YP_007280311.1| - 3.7e-28 97.4 0.7 7.1e-28 96.5 0.7 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|433590815|ref|YP_007280311.1| - 6.9e-19 67.8 1.6 8.3e-19 67.5 0.4 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|433590815|ref|YP_007280311.1| - 1.4e-10 41.3 0.9 3.1e-10 40.2 0.1 1.9 2 0 0 2 2 2 1 FeoA domain MarR PF01047.22 gi|433590815|ref|YP_007280311.1| - 4.6e-08 32.9 0.0 1.1e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|433590815|ref|YP_007280311.1| - 1.5e-06 28.0 0.2 5.5e-06 26.2 0.0 2.0 2 0 0 2 2 1 1 MarR family HTH_27 PF13463.6 gi|433590815|ref|YP_007280311.1| - 2.8e-05 24.5 0.3 6e-05 23.5 0.3 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|433590815|ref|YP_007280311.1| - 7.4e-05 22.2 0.0 0.00016 21.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|433590815|ref|YP_007280311.1| - 0.00019 21.4 0.1 0.0004 20.3 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|433590815|ref|YP_007280311.1| - 0.0012 18.7 0.1 0.0029 17.4 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_1 PF00126.27 gi|433590815|ref|YP_007280311.1| - 0.0013 18.6 0.0 0.0034 17.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family GntR PF00392.21 gi|433590815|ref|YP_007280311.1| - 0.0016 18.0 0.0 0.0042 16.7 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|433590815|ref|YP_007280311.1| - 0.002 18.4 0.1 0.006 16.9 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HxlR PF01638.17 gi|433590815|ref|YP_007280311.1| - 0.0047 16.8 0.2 0.0085 15.9 0.2 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.10 gi|433590815|ref|YP_007280311.1| - 0.0054 16.7 0.1 0.014 15.3 0.1 1.8 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_13 PF11972.8 gi|433590815|ref|YP_007280311.1| - 0.0064 16.5 0.1 0.013 15.5 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.7 gi|433590815|ref|YP_007280311.1| - 0.0081 16.2 0.2 0.052 13.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433590815|ref|YP_007280311.1| - 0.0094 15.7 0.1 0.034 13.9 0.0 2.0 2 0 0 2 2 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|433590815|ref|YP_007280311.1| - 0.013 15.9 0.1 0.027 14.8 0.1 1.6 1 0 0 1 1 1 0 Penicillinase repressor HrcA_DNA-bdg PF03444.15 gi|433590815|ref|YP_007280311.1| - 0.016 14.8 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_5 PF01022.20 gi|433590815|ref|YP_007280311.1| - 0.026 14.4 0.1 0.13 12.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Topoisom_bac PF01131.20 gi|433590815|ref|YP_007280311.1| - 0.046 12.7 0.1 0.065 12.2 0.1 1.2 1 0 0 1 1 1 0 DNA topoisomerase HTH_23 PF13384.6 gi|433590815|ref|YP_007280311.1| - 0.05 13.4 0.0 0.22 11.4 0.0 2.1 1 1 1 2 2 2 0 Homeodomain-like domain HTH_45 PF14947.6 gi|433590815|ref|YP_007280311.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HrcA_DNA-bdg PF03444.15 gi|433590816|ref|YP_007280312.1| - 7.3e-37 124.9 0.1 1.1e-36 124.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|433590816|ref|YP_007280312.1| - 9.9e-09 35.4 0.0 1.8e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|433590816|ref|YP_007280312.1| - 1.3e-06 28.2 0.0 2.2e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|433590816|ref|YP_007280312.1| - 0.025 14.5 0.0 0.047 13.6 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|433590816|ref|YP_007280312.1| - 0.033 14.3 0.0 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|433590816|ref|YP_007280312.1| - 0.06 13.4 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_24 PF13412.6 gi|433590816|ref|YP_007280312.1| - 0.071 12.7 0.3 0.16 11.5 0.3 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DNA_topoisoIV PF00521.20 gi|433590817|ref|YP_007280313.1| - 1.2e-155 518.7 0.0 1.4e-155 518.4 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|433590817|ref|YP_007280313.1| - 3.4e-77 253.7 10.9 5.4e-14 51.4 0.2 6.5 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller IKI3 PF04762.12 gi|433590817|ref|YP_007280313.1| - 0.036 12.1 1.7 0.1 10.6 0.0 2.3 1 1 0 3 3 3 0 IKI3 family DUF745 PF05335.13 gi|433590817|ref|YP_007280313.1| - 2.1 8.0 5.7 3.9 7.2 5.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF745) DNA_gyraseB PF00204.25 gi|433590818|ref|YP_007280314.1| - 4.4e-61 205.4 1.0 8.4e-61 204.5 1.0 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|433590818|ref|YP_007280314.1| - 1e-29 102.5 0.0 2.3e-29 101.4 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|433590818|ref|YP_007280314.1| - 5.2e-24 84.9 0.2 1.5e-23 83.4 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|433590818|ref|YP_007280314.1| - 4.2e-17 62.2 0.0 1e-16 61.0 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|433590818|ref|YP_007280314.1| - 0.00079 19.3 0.0 0.0017 18.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4677 PF15726.5 gi|433590818|ref|YP_007280314.1| - 0.087 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4677) Proteasome PF00227.26 gi|433590819|ref|YP_007280315.1| - 6.3e-45 153.0 0.1 7.3e-45 152.8 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Proteasome PF00227.26 gi|433590820|ref|YP_007280316.1| - 2.1e-57 193.7 0.0 2.6e-57 193.4 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|433590820|ref|YP_007280316.1| - 7.2e-14 51.2 0.1 1.5e-13 50.2 0.1 1.6 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Nramp PF01566.18 gi|433590821|ref|YP_007280317.1| - 1.8e-32 112.7 29.4 1.8e-32 112.7 29.4 1.4 1 1 0 1 1 1 1 Natural resistance-associated macrophage protein SPW PF03779.14 gi|433590822|ref|YP_007280318.1| - 0.06 12.9 19.5 0.055 13.1 10.1 3.5 2 2 0 2 2 2 0 SPW repeat MHYT PF03707.16 gi|433590822|ref|YP_007280318.1| - 1.6 9.0 14.8 2.9 8.1 2.6 3.6 2 1 1 3 3 3 0 Bacterial signalling protein N terminal repeat CoatB PF10389.9 gi|433590822|ref|YP_007280318.1| - 2.8 7.9 10.0 16 5.5 0.8 3.5 3 0 0 3 3 3 0 Bacteriophage coat protein B DUF202 PF02656.15 gi|433590822|ref|YP_007280318.1| - 4.5 7.8 15.4 2.8 8.4 4.5 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF202) PAP2 PF01569.21 gi|433590822|ref|YP_007280318.1| - 4.5 7.0 7.5 12 5.7 0.7 2.5 1 1 1 2 2 2 0 PAP2 superfamily DNA_ligase_IV PF11411.8 gi|433590823|ref|YP_007280319.1| - 6.5 7.0 6.3 8 6.7 1.0 2.6 2 0 0 2 2 2 0 DNA ligase IV Ion_trans_2 PF07885.16 gi|433590824|ref|YP_007280320.1| - 0.016 15.1 9.3 0.016 15.1 9.3 1.9 2 0 0 2 2 2 0 Ion channel Pyr_redox_2 PF07992.14 gi|433590825|ref|YP_007280321.1| - 1.8e-46 158.7 0.8 2.6e-46 158.2 0.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|433590825|ref|YP_007280321.1| - 1.5e-25 89.6 0.8 2.8e-25 88.7 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|433590825|ref|YP_007280321.1| - 1.7e-14 54.1 0.1 1.1e-11 45.1 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|433590825|ref|YP_007280321.1| - 0.00012 21.5 0.0 0.04 13.2 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|433590825|ref|YP_007280321.1| - 0.00078 18.7 0.0 0.0021 17.3 0.0 1.7 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) DrsE PF02635.15 gi|433590826|ref|YP_007280322.1| - 1.4e-06 28.7 0.0 1.7e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family Topo-VIb_trans PF09239.11 gi|433590827|ref|YP_007280323.1| - 4.4e-62 208.6 0.0 8.1e-62 207.7 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|433590827|ref|YP_007280323.1| - 3.5e-40 136.7 4.9 4.7e-40 136.3 3.3 2.1 2 0 0 2 2 2 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|433590827|ref|YP_007280323.1| - 3.5e-13 50.0 0.0 9.8e-13 48.6 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|433590827|ref|YP_007280323.1| - 1.1e-11 44.8 0.0 4e-11 42.9 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|433590827|ref|YP_007280323.1| - 0.0068 16.4 0.1 0.11 12.4 0.0 2.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain DUF3140 PF11338.8 gi|433590827|ref|YP_007280323.1| - 0.075 13.5 0.2 0.32 11.5 0.2 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3140) HHH_5 PF14520.6 gi|433590827|ref|YP_007280323.1| - 0.091 13.4 0.1 0.57 10.8 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain TP6A_N PF04406.14 gi|433590828|ref|YP_007280324.1| - 3.6e-15 55.7 0.1 6.4e-15 54.9 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase cpYpsA PF12694.7 gi|433590828|ref|YP_007280324.1| - 0.0077 16.0 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Circularly permutated YpsA SLOG family Collectrin PF16959.5 gi|433590829|ref|YP_007280325.1| - 0.16 11.8 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 Renal amino acid transporter CopD PF05425.13 gi|433590829|ref|YP_007280325.1| - 0.16 12.4 7.5 0.21 12.0 7.5 1.2 1 0 0 1 1 1 0 Copper resistance protein D Lactamase_B_3 PF13483.6 gi|433590830|ref|YP_007280326.1| - 4e-33 114.6 0.0 5.4e-33 114.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|433590830|ref|YP_007280326.1| - 2.9e-06 27.0 0.1 4e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FAA_hydrolase PF01557.18 gi|433590831|ref|YP_007280327.1| - 1.4e-65 221.1 0.0 1.6e-65 220.8 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DZR PF12773.7 gi|433590832|ref|YP_007280328.1| - 0.009 16.0 0.5 0.011 15.7 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|433590832|ref|YP_007280328.1| - 0.38 10.5 3.8 0.63 9.8 3.8 1.3 1 0 0 1 1 1 0 zinc-ribbon domain AsnC_trans_reg PF01037.21 gi|433590833|ref|YP_007280329.1| - 3.5e-12 46.1 0.0 5.9e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|433590833|ref|YP_007280329.1| - 2.2e-11 43.1 0.4 5.4e-11 41.9 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433590833|ref|YP_007280329.1| - 2.2e-07 30.6 0.8 5.3e-07 29.4 0.1 1.9 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|433590833|ref|YP_007280329.1| - 1.3e-06 28.2 0.1 4.3e-06 26.6 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.6 gi|433590833|ref|YP_007280329.1| - 8.2e-06 25.6 0.2 1.3e-05 24.9 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|433590833|ref|YP_007280329.1| - 5.5e-05 23.1 0.1 0.00013 21.9 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|433590833|ref|YP_007280329.1| - 0.00012 21.7 0.2 0.00093 18.9 0.1 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|433590833|ref|YP_007280329.1| - 0.00022 20.8 0.0 0.00051 19.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|433590833|ref|YP_007280329.1| - 0.00023 21.2 0.0 0.0011 19.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433590833|ref|YP_007280329.1| - 0.00027 20.8 0.0 0.00049 20.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|433590833|ref|YP_007280329.1| - 0.00097 19.0 0.0 0.0018 18.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|433590833|ref|YP_007280329.1| - 0.003 17.3 0.0 0.0057 16.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|433590833|ref|YP_007280329.1| - 0.0035 17.2 0.0 0.007 16.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_7 PF02796.15 gi|433590833|ref|YP_007280329.1| - 0.0043 17.1 0.0 0.012 15.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR PF01047.22 gi|433590833|ref|YP_007280329.1| - 0.0044 16.9 0.0 0.0084 16.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_40 PF14493.6 gi|433590833|ref|YP_007280329.1| - 0.005 17.3 0.0 0.015 15.8 0.0 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433590833|ref|YP_007280329.1| - 0.0091 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|433590833|ref|YP_007280329.1| - 0.0094 16.1 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 gi|433590833|ref|YP_007280329.1| - 0.016 15.0 0.0 0.093 12.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|433590833|ref|YP_007280329.1| - 0.016 14.7 0.0 0.24 11.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.6 gi|433590833|ref|YP_007280329.1| - 0.023 14.7 0.0 0.041 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.6 gi|433590833|ref|YP_007280329.1| - 0.032 14.1 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain E3_UFM1_ligase PF09743.9 gi|433590833|ref|YP_007280329.1| - 0.036 13.7 0.1 0.05 13.2 0.1 1.5 1 1 0 1 1 1 0 E3 UFM1-protein ligase 1 HTH_41 PF14502.6 gi|433590833|ref|YP_007280329.1| - 0.05 13.3 0.0 0.24 11.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Mga PF05043.13 gi|433590833|ref|YP_007280329.1| - 0.052 14.1 0.0 0.14 12.7 0.0 1.7 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_50 PF18024.1 gi|433590833|ref|YP_007280329.1| - 0.064 12.9 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.11 gi|433590833|ref|YP_007280329.1| - 0.065 13.0 0.0 0.28 11.0 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF742) GYD PF08734.11 gi|433590833|ref|YP_007280329.1| - 0.08 12.9 0.3 0.19 11.7 0.3 1.7 1 1 0 1 1 1 0 GYD domain Rrf2 PF02082.20 gi|433590833|ref|YP_007280329.1| - 0.083 13.2 0.0 0.23 11.8 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|433590833|ref|YP_007280329.1| - 0.084 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_1 PF00126.27 gi|433590833|ref|YP_007280329.1| - 0.19 11.7 0.0 0.38 10.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TAT_signal PF10518.9 gi|433590834|ref|YP_007280330.1| - 0.014 15.3 1.7 0.014 15.3 1.7 2.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|433590834|ref|YP_007280330.1| - 0.098 12.0 1.2 0.16 11.3 0.2 1.9 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PQQ PF01011.21 gi|433590835|ref|YP_007280331.1| - 8.1e-16 57.1 11.9 0.00013 21.7 0.0 6.4 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_2 PF13360.6 gi|433590835|ref|YP_007280331.1| - 2.8e-11 43.5 5.1 4e-06 26.6 0.0 4.0 3 1 0 4 4 4 3 PQQ-like domain PQQ_3 PF13570.6 gi|433590835|ref|YP_007280331.1| - 9e-08 32.4 14.7 0.11 13.0 0.5 5.9 6 0 0 6 6 6 3 PQQ-like domain GSDH PF07995.11 gi|433590836|ref|YP_007280332.1| - 3.3e-27 95.7 0.5 6.2e-13 48.8 0.3 2.2 2 0 0 2 2 2 2 Glucose / Sorbosone dehydrogenase Copper-bind PF00127.20 gi|433590836|ref|YP_007280332.1| - 1.7e-08 34.8 0.0 3.5e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|433590836|ref|YP_007280332.1| - 0.00023 21.2 0.0 0.00042 20.4 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain NHL PF01436.21 gi|433590836|ref|YP_007280332.1| - 0.075 13.1 0.0 2.1 8.6 0.0 3.1 2 0 0 2 2 2 0 NHL repeat Na_Ca_ex PF01699.24 gi|433590837|ref|YP_007280333.1| - 1.4e-24 86.8 36.6 1.9e-16 60.4 11.6 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Na_Ca_ex PF01699.24 gi|433590838|ref|YP_007280334.1| - 1.5e-18 67.2 37.2 2.9e-14 53.3 13.7 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein HTH_20 PF12840.7 gi|433590839|ref|YP_007280335.1| - 6.3e-15 55.0 0.4 8.8e-15 54.5 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433590839|ref|YP_007280335.1| - 1.7e-14 53.4 0.0 2.9e-14 52.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|433590839|ref|YP_007280335.1| - 2e-08 33.9 1.6 6.7e-08 32.2 1.6 1.8 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433590839|ref|YP_007280335.1| - 6.1e-07 29.2 0.1 8.4e-07 28.8 0.1 1.4 1 1 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|433590839|ref|YP_007280335.1| - 1.3e-06 28.4 0.4 3.2e-06 27.2 0.4 1.6 1 0 0 1 1 1 1 DprA winged helix domain MarR PF01047.22 gi|433590839|ref|YP_007280335.1| - 8.2e-06 25.7 0.0 1.2e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433590839|ref|YP_007280335.1| - 4.1e-05 23.4 0.1 5.6e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|433590839|ref|YP_007280335.1| - 0.00017 21.1 0.0 0.00097 18.7 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|433590839|ref|YP_007280335.1| - 0.00093 19.1 0.4 0.0039 17.1 0.4 1.9 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|433590839|ref|YP_007280335.1| - 0.0012 18.8 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|433590839|ref|YP_007280335.1| - 0.0012 19.3 0.1 0.0017 18.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|433590839|ref|YP_007280335.1| - 0.0021 18.3 0.1 0.0028 17.9 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator RP-C PF03428.13 gi|433590839|ref|YP_007280335.1| - 0.0024 17.6 0.0 0.0028 17.3 0.0 1.2 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_Crp_2 PF13545.6 gi|433590839|ref|YP_007280335.1| - 0.0098 15.8 0.1 0.014 15.4 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|433590839|ref|YP_007280335.1| - 0.017 15.1 0.1 0.026 14.5 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF2250 PF10007.9 gi|433590839|ref|YP_007280335.1| - 0.019 15.0 0.1 0.037 14.1 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PaaX PF07848.12 gi|433590839|ref|YP_007280335.1| - 0.025 14.8 0.1 0.038 14.2 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein FaeA PF04703.12 gi|433590839|ref|YP_007280335.1| - 0.048 14.0 0.1 0.066 13.6 0.1 1.2 1 0 0 1 1 1 0 FaeA-like protein Fe_dep_repress PF01325.19 gi|433590839|ref|YP_007280335.1| - 0.061 13.5 0.0 0.088 13.0 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sulfolobus_pRN PF05584.11 gi|433590839|ref|YP_007280335.1| - 0.063 13.3 0.1 0.073 13.1 0.1 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein NMT1 PF09084.11 gi|433590841|ref|YP_007280337.1| - 4.5e-22 79.1 0.0 6.3e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|433590841|ref|YP_007280337.1| - 0.00011 21.8 0.2 0.00029 20.5 0.1 1.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein MarR_2 PF12802.7 gi|433590841|ref|YP_007280337.1| - 0.00014 21.7 0.6 0.0006 19.7 0.6 2.1 1 1 0 1 1 1 1 MarR family OpuAC PF04069.12 gi|433590841|ref|YP_007280337.1| - 0.066 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system HalOD1 PF18545.1 gi|433590842|ref|YP_007280338.1| - 2.5e-21 75.7 0.2 3.2e-21 75.4 0.2 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 MOSC_N PF03476.16 gi|433590843|ref|YP_007280339.1| - 3.3e-16 59.2 0.1 9.5e-16 57.8 0.1 1.9 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 gi|433590843|ref|YP_007280339.1| - 7.7e-08 32.4 0.0 1.2e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 MOSC domain ThiS PF02597.20 gi|433590844|ref|YP_007280340.1| - 0.0081 16.8 0.0 0.014 16.0 0.0 1.3 1 0 0 1 1 1 1 ThiS family HTH_20 PF12840.7 gi|433590845|ref|YP_007280341.1| - 1.7e-06 28.0 1.8 4.5e-06 26.6 0.8 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433590845|ref|YP_007280341.1| - 1.1e-05 25.3 0.5 2.2e-05 24.3 0.5 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|433590845|ref|YP_007280341.1| - 3.1e-05 23.4 0.2 5.2e-05 22.7 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433590845|ref|YP_007280341.1| - 0.0004 20.2 0.9 0.0011 18.8 0.9 1.7 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|433590845|ref|YP_007280341.1| - 0.0013 18.6 0.2 0.0024 17.7 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|433590845|ref|YP_007280341.1| - 0.0019 18.1 0.0 0.0041 17.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|433590845|ref|YP_007280341.1| - 0.0025 17.8 0.0 0.0041 17.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|433590845|ref|YP_007280341.1| - 0.0039 17.1 0.1 0.0093 15.8 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|433590845|ref|YP_007280341.1| - 0.011 15.3 1.2 0.036 13.7 1.2 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|433590845|ref|YP_007280341.1| - 0.02 15.4 0.2 0.044 14.3 0.2 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|433590845|ref|YP_007280341.1| - 0.12 12.2 0.1 0.27 11.1 0.0 1.5 2 0 0 2 2 2 0 TFIIE alpha subunit Zn-ribbon_8 PF09723.10 gi|433590846|ref|YP_007280342.1| - 0.0018 18.3 1.1 0.013 15.7 0.1 2.1 2 0 0 2 2 2 1 Zinc ribbon domain Phage_holin_3_6 PF07332.11 gi|433590847|ref|YP_007280343.1| - 0.38 10.8 12.8 0.43 10.6 12.8 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF5326 PF17260.2 gi|433590847|ref|YP_007280343.1| - 5 7.3 9.9 0.37 11.0 5.1 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5326) DDE_Tnp_IS240 PF13610.6 gi|433590848|ref|YP_007280344.1| - 2e-15 57.2 0.1 2.7e-15 56.8 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.26 gi|433590848|ref|YP_007280344.1| - 0.0061 16.7 0.2 0.012 15.8 0.2 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 gi|433590848|ref|YP_007280344.1| - 0.0072 15.8 0.4 0.013 14.9 0.1 1.6 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.6 gi|433590848|ref|YP_007280344.1| - 0.011 15.5 0.1 0.057 13.2 0.0 2.1 1 1 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_4 PF13359.6 gi|433590848|ref|YP_007280344.1| - 0.067 12.8 0.0 0.093 12.4 0.0 1.2 1 0 0 1 1 1 0 DDE superfamily endonuclease UPF0158 PF03682.13 gi|433590848|ref|YP_007280344.1| - 0.068 13.1 0.1 0.84 9.6 0.0 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0158) UbiA PF01040.18 gi|433590849|ref|YP_007280345.1| - 1.1e-22 80.6 23.5 1.4e-22 80.2 23.5 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF5453 PF17534.2 gi|433590849|ref|YP_007280345.1| - 1.1 9.1 5.6 2 8.4 1.4 2.6 1 1 0 2 2 2 0 Family of unknown function (DUF5453) ATP-grasp_2 PF08442.10 gi|433590850|ref|YP_007280346.1| - 3.3e-63 212.9 0.7 5.9e-63 212.1 0.7 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|433590850|ref|YP_007280346.1| - 2.8e-20 72.8 3.8 3.9e-19 69.0 3.6 2.4 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|433590850|ref|YP_007280346.1| - 4.4e-13 49.2 0.7 1e-10 41.5 0.4 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain Ligase_CoA PF00549.19 gi|433590850|ref|YP_007280346.1| - 2.5e-12 46.9 0.3 6.6e-12 45.5 0.3 1.7 1 0 0 1 1 1 1 CoA-ligase ATP-grasp PF02222.22 gi|433590850|ref|YP_007280346.1| - 1.2e-07 31.5 0.1 2.3e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|433590850|ref|YP_007280346.1| - 4.9e-06 26.5 0.2 1e-05 25.4 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|433590850|ref|YP_007280346.1| - 0.06 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 RimK-like ATP-grasp domain CoA_binding PF02629.19 gi|433590851|ref|YP_007280347.1| - 6.3e-25 87.7 1.9 9.4e-25 87.1 0.6 2.0 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|433590851|ref|YP_007280347.1| - 9.1e-14 51.5 0.7 2.1e-13 50.4 0.7 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|433590851|ref|YP_007280347.1| - 3.4e-11 43.1 0.0 5.7e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|433590851|ref|YP_007280347.1| - 8.5e-05 23.0 0.0 0.00037 21.0 0.0 1.9 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.12 gi|433590851|ref|YP_007280347.1| - 0.011 15.4 0.1 0.018 14.6 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain HypA PF01155.19 gi|433590852|ref|YP_007280348.1| - 0.00089 19.3 0.1 0.00099 19.1 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|433590852|ref|YP_007280348.1| - 0.00091 19.1 0.6 0.002 18.0 0.6 1.6 1 1 1 2 2 2 2 zinc-ribbon domain zf-ACC PF17848.1 gi|433590852|ref|YP_007280348.1| - 0.0016 18.4 2.3 0.57 10.3 0.1 2.2 2 0 0 2 2 2 2 Acetyl-coA carboxylase zinc finger domain Zn_ribbon_SprT PF17283.2 gi|433590852|ref|YP_007280348.1| - 0.0056 16.6 0.1 0.0056 16.6 0.1 1.6 2 0 0 2 2 2 1 SprT-like zinc ribbon domain Lar_restr_allev PF14354.6 gi|433590852|ref|YP_007280348.1| - 0.0061 16.9 0.4 3.7 8.0 0.0 2.1 2 0 0 2 2 2 2 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|433590852|ref|YP_007280348.1| - 0.012 15.0 1.6 0.24 10.8 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|433590852|ref|YP_007280348.1| - 0.014 15.0 1.9 0.18 11.5 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Anti-TRAP PF15777.5 gi|433590852|ref|YP_007280348.1| - 0.021 14.8 1.3 0.026 14.5 1.3 1.1 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DNA_RNApol_7kD PF03604.13 gi|433590852|ref|YP_007280348.1| - 0.033 13.9 2.2 0.075 12.7 2.2 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF1451 PF07295.11 gi|433590852|ref|YP_007280348.1| - 0.072 13.1 0.1 0.077 13.0 0.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain NRDD PF13597.6 gi|433590852|ref|YP_007280348.1| - 0.1 11.4 0.4 0.12 11.1 0.4 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF35_N PF12172.8 gi|433590852|ref|YP_007280348.1| - 0.14 12.0 1.0 0.14 12.0 1.0 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|433590852|ref|YP_007280348.1| - 0.33 11.1 4.5 0.85 9.8 4.5 1.8 1 1 0 1 1 1 0 Zinc ribbon domain RuBisCO_large_N PF02788.16 gi|433590854|ref|YP_007280350.1| - 0.0002 21.5 0.0 0.00024 21.3 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain Abhydrolase_1 PF00561.20 gi|433590856|ref|YP_007280352.1| - 1.3e-18 67.6 0.0 2.1e-17 63.7 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433590856|ref|YP_007280352.1| - 3.9e-14 53.8 4.7 4.7e-14 53.5 4.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433590856|ref|YP_007280352.1| - 2.5e-06 26.9 0.0 0.00022 20.6 0.0 2.0 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Radical_SAM PF04055.21 gi|433590858|ref|YP_007280354.1| - 2.9e-17 63.5 1.1 1.9e-14 54.4 0.2 2.4 2 0 0 2 2 2 2 Radical SAM superfamily BATS PF06968.13 gi|433590858|ref|YP_007280354.1| - 2e-15 56.7 0.0 4e-15 55.7 0.0 1.5 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Pterin_bind PF00809.22 gi|433590858|ref|YP_007280354.1| - 0.068 12.8 0.1 0.35 10.5 0.1 2.2 1 1 0 1 1 1 0 Pterin binding enzyme ELFV_dehydrog PF00208.21 gi|433590859|ref|YP_007280355.1| - 0.005 16.6 0.0 0.0084 15.8 0.0 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.22 gi|433590859|ref|YP_007280355.1| - 0.02 15.7 0.3 6.2 7.7 0.0 2.9 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold PglD_N PF17836.1 gi|433590859|ref|YP_007280355.1| - 0.11 13.2 1.2 2.3 8.9 0.0 2.9 3 0 0 3 3 3 0 PglD N-terminal domain DUF4764 PF15961.5 gi|433590859|ref|YP_007280355.1| - 0.25 10.0 0.0 0.31 9.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4764) Aminotran_1_2 PF00155.21 gi|433590860|ref|YP_007280356.1| - 1.3e-57 195.7 0.0 1.4e-57 195.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|433590860|ref|YP_007280356.1| - 0.00018 20.2 0.0 0.00046 18.8 0.0 1.6 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|433590860|ref|YP_007280356.1| - 0.0005 19.5 1.4 0.085 12.1 0.1 2.2 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|433590860|ref|YP_007280356.1| - 0.032 13.2 0.0 0.061 12.3 0.0 1.4 1 1 0 1 1 1 0 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|433590860|ref|YP_007280356.1| - 0.066 11.9 0.0 0.096 11.4 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Flg_hook PF02120.16 gi|433590860|ref|YP_007280356.1| - 0.086 12.7 0.0 1.1 9.2 0.0 2.4 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK RP1-2 PF12042.8 gi|433590860|ref|YP_007280356.1| - 0.44 10.4 5.2 0.072 13.0 0.9 1.8 2 0 0 2 2 2 0 Tubuliform egg casing silk strands structural domain AAA_26 PF13500.6 gi|433590861|ref|YP_007280357.1| - 2e-31 109.4 0.0 2.3e-31 109.2 0.0 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|433590861|ref|YP_007280357.1| - 1.7e-07 31.3 0.0 4.1e-07 30.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|433590861|ref|YP_007280357.1| - 0.00031 20.1 0.4 0.0013 18.0 0.1 2.0 2 1 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain ArsA_ATPase PF02374.15 gi|433590861|ref|YP_007280357.1| - 0.089 12.0 0.1 2 7.5 0.0 2.0 2 0 0 2 2 2 0 Anion-transporting ATPase ResIII PF04851.15 gi|433590861|ref|YP_007280357.1| - 0.27 11.2 0.1 0.44 10.5 0.1 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit zf-C2H2_4 PF13894.6 gi|433590862|ref|YP_007280358.1| - 0.0032 18.2 0.0 0.0043 17.8 0.0 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-Di19 PF05605.12 gi|433590862|ref|YP_007280358.1| - 0.0039 17.5 0.1 0.005 17.1 0.1 1.2 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding GAGA PF09237.11 gi|433590862|ref|YP_007280358.1| - 0.021 14.6 0.0 0.035 13.9 0.0 1.3 1 0 0 1 1 1 0 GAGA factor zf-C2H2 PF00096.26 gi|433590862|ref|YP_007280358.1| - 0.061 13.8 0.0 0.087 13.3 0.0 1.2 1 0 0 1 1 1 0 Zinc finger, C2H2 type AAA PF00004.29 gi|433590863|ref|YP_007280359.1| - 1.4e-11 45.0 0.0 6e-11 42.9 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|433590863|ref|YP_007280359.1| - 9.9e-06 25.4 0.0 2.2e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|433590863|ref|YP_007280359.1| - 0.00016 22.0 0.8 0.00041 20.6 0.2 2.0 2 0 0 2 2 2 1 AAA C-terminal domain AAA_16 PF13191.6 gi|433590863|ref|YP_007280359.1| - 0.0002 21.8 0.6 0.0011 19.3 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|433590863|ref|YP_007280359.1| - 0.00027 21.2 0.0 0.089 13.1 0.0 3.2 2 1 0 2 2 1 1 AAA domain AAA_30 PF13604.6 gi|433590863|ref|YP_007280359.1| - 0.00073 19.3 0.2 0.0022 17.7 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|433590863|ref|YP_007280359.1| - 0.001 18.7 0.1 0.43 10.1 0.0 2.9 3 0 0 3 3 2 1 AAA domain RsgA_GTPase PF03193.16 gi|433590863|ref|YP_007280359.1| - 0.0034 17.3 0.0 0.011 15.6 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_5 PF07728.14 gi|433590863|ref|YP_007280359.1| - 0.0061 16.6 0.2 0.029 14.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|433590863|ref|YP_007280359.1| - 0.0072 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_28 PF13521.6 gi|433590863|ref|YP_007280359.1| - 0.01 16.1 0.1 0.047 13.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|433590863|ref|YP_007280359.1| - 0.011 15.5 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|433590863|ref|YP_007280359.1| - 0.016 15.8 0.2 0.13 12.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|433590863|ref|YP_007280359.1| - 0.017 15.3 0.3 0.07 13.3 0.0 2.3 3 0 0 3 3 1 0 AAA domain CPT PF07931.12 gi|433590863|ref|YP_007280359.1| - 0.017 15.0 0.3 4 7.2 0.0 2.7 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_2 PF07724.14 gi|433590863|ref|YP_007280359.1| - 0.029 14.5 0.0 0.07 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Bac_DnaA PF00308.18 gi|433590863|ref|YP_007280359.1| - 0.031 14.1 0.1 3.8 7.3 0.0 3.1 3 0 0 3 3 3 0 Bacterial dnaA protein Hydin_ADK PF17213.3 gi|433590863|ref|YP_007280359.1| - 0.037 14.3 0.2 0.037 14.3 0.2 2.4 2 1 0 3 3 2 0 Hydin Adenylate kinase-like domain IPT PF01745.16 gi|433590863|ref|YP_007280359.1| - 0.051 12.9 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Isopentenyl transferase RNA_helicase PF00910.22 gi|433590863|ref|YP_007280359.1| - 0.053 13.9 0.0 0.15 12.4 0.0 1.7 1 1 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|433590863|ref|YP_007280359.1| - 0.058 12.7 0.0 0.14 11.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AA_kinase PF00696.28 gi|433590863|ref|YP_007280359.1| - 0.075 12.6 0.2 0.33 10.5 0.0 2.1 2 0 0 2 2 2 0 Amino acid kinase family DNA_pol3_delta PF06144.13 gi|433590863|ref|YP_007280359.1| - 0.079 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, delta subunit NACHT PF05729.12 gi|433590863|ref|YP_007280359.1| - 0.093 12.6 0.1 0.5 10.3 0.0 2.2 3 0 0 3 3 2 0 NACHT domain Viral_helicase1 PF01443.18 gi|433590863|ref|YP_007280359.1| - 0.11 12.2 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DEAD PF00270.29 gi|433590863|ref|YP_007280359.1| - 0.12 12.2 0.0 8.7 6.1 0.0 2.5 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_6 PF12774.7 gi|433590863|ref|YP_007280359.1| - 0.14 11.1 0.0 0.83 8.6 0.0 1.9 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region TPP_enzyme_M_2 PF16582.5 gi|433590863|ref|YP_007280359.1| - 0.16 11.6 0.1 0.31 10.7 0.1 1.4 1 0 0 1 1 1 0 Middle domain of thiamine pyrophosphate AAA_17 PF13207.6 gi|433590863|ref|YP_007280359.1| - 0.19 12.1 3.4 2.2 8.7 0.0 3.3 3 0 0 3 3 3 0 AAA domain Archease PF01951.16 gi|433590863|ref|YP_007280359.1| - 0.35 11.1 0.1 0.35 11.1 0.1 2.1 2 0 0 2 2 2 0 Archease protein family (MTH1598/TM1083) DUF21 PF01595.20 gi|433590865|ref|YP_007280361.1| - 3.6e-49 166.8 0.8 4.9e-49 166.4 0.8 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|433590865|ref|YP_007280361.1| - 6.9e-22 77.3 0.8 1.9e-21 75.9 0.6 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|433590865|ref|YP_007280361.1| - 2.9e-11 43.6 3.2 2.7e-08 34.1 0.2 2.8 2 0 0 2 2 2 2 CBS domain MoCF_biosynth PF00994.24 gi|433590866|ref|YP_007280362.1| - 3.6e-31 107.8 0.3 6.1e-31 107.0 0.3 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain YdjM PF04307.14 gi|433590867|ref|YP_007280363.1| - 7.8e-08 31.8 4.2 1e-07 31.5 4.2 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase ABC1 PF03109.16 gi|433590868|ref|YP_007280364.1| - 6.2e-19 68.3 0.0 1.4e-18 67.1 0.0 1.6 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 gi|433590868|ref|YP_007280364.1| - 0.00016 21.7 2.7 0.0083 16.1 1.0 3.7 2 1 0 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|433590868|ref|YP_007280364.1| - 0.05 13.0 0.0 0.072 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain WaaY PF06176.11 gi|433590868|ref|YP_007280364.1| - 0.14 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) HTH_31 PF13560.6 gi|433590869|ref|YP_007280365.1| - 3.5e-08 33.7 0.2 9.8e-08 32.2 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|433590869|ref|YP_007280365.1| - 1.1e-06 28.6 0.0 3.7e-06 26.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|433590869|ref|YP_007280365.1| - 0.00022 21.2 0.0 0.00053 19.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain AA_permease PF00324.21 gi|433590870|ref|YP_007280366.1| - 4.2e-47 160.8 35.3 5.5e-47 160.4 35.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|433590870|ref|YP_007280366.1| - 3.5e-45 154.6 36.2 4.5e-45 154.2 36.2 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|433590870|ref|YP_007280366.1| - 1.1e-15 58.4 6.6 5.4e-13 49.7 0.3 2.8 2 1 0 2 2 2 2 Universal stress protein family Spore_permease PF03845.13 gi|433590870|ref|YP_007280366.1| - 2.2e-05 23.4 17.2 0.00031 19.7 8.1 2.2 2 0 0 2 2 2 2 Spore germination protein GCV_H PF01597.19 gi|433590871|ref|YP_007280367.1| - 4.9e-42 142.7 0.0 5.4e-42 142.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein GCV_T PF01571.21 gi|433590872|ref|YP_007280368.1| - 1.8e-82 276.6 0.1 2.3e-82 276.3 0.1 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|433590872|ref|YP_007280368.1| - 7.1e-23 80.3 0.2 1.3e-22 79.5 0.2 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain DUF3659 PF12396.8 gi|433590872|ref|YP_007280368.1| - 0.14 12.1 0.1 5.1 7.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Aldedh PF00171.22 gi|433590873|ref|YP_007280369.1| - 3.9e-158 526.7 0.0 4.5e-158 526.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DDE_Tnp_IS240 PF13610.6 gi|433590875|ref|YP_007280371.1| - 2e-15 57.2 0.1 2.7e-15 56.8 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.26 gi|433590875|ref|YP_007280371.1| - 0.0061 16.7 0.2 0.012 15.8 0.2 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 gi|433590875|ref|YP_007280371.1| - 0.0072 15.8 0.4 0.013 14.9 0.1 1.6 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.6 gi|433590875|ref|YP_007280371.1| - 0.011 15.5 0.1 0.057 13.2 0.0 2.1 1 1 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_4 PF13359.6 gi|433590875|ref|YP_007280371.1| - 0.067 12.8 0.0 0.093 12.4 0.0 1.2 1 0 0 1 1 1 0 DDE superfamily endonuclease UPF0158 PF03682.13 gi|433590875|ref|YP_007280371.1| - 0.068 13.1 0.1 0.84 9.6 0.0 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0158) Peptidase_S8 PF00082.22 gi|433590877|ref|YP_007280373.1| - 1.5e-49 168.9 4.7 2.5e-49 168.1 4.7 1.3 1 0 0 1 1 1 1 Subtilase family DUF2398 PF09661.10 gi|433590877|ref|YP_007280373.1| - 0.11 11.7 0.2 0.2 10.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2398) TAT_signal PF10518.9 gi|433590877|ref|YP_007280373.1| - 0.19 11.6 0.1 0.19 11.6 0.1 3.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_S8 PF00082.22 gi|433590878|ref|YP_007280374.1| - 1.6e-51 175.3 6.1 2.4e-51 174.8 6.1 1.2 1 0 0 1 1 1 1 Subtilase family PPC PF04151.15 gi|433590878|ref|YP_007280374.1| - 0.04 15.0 1.2 0.04 15.0 1.2 2.8 2 1 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain NYN PF01936.18 gi|433590879|ref|YP_007280375.1| - 2.5e-19 70.2 0.0 2.9e-19 70.0 0.0 1.0 1 0 0 1 1 1 1 NYN domain PIN7 PF18475.1 gi|433590879|ref|YP_007280375.1| - 0.068 13.8 0.0 0.1 13.2 0.0 1.3 1 0 0 1 1 1 0 PIN domain CoA_binding_2 PF13380.6 gi|433590879|ref|YP_007280375.1| - 0.087 13.3 0.1 5.9 7.4 0.0 2.0 1 1 1 2 2 2 0 CoA binding domain TRAM PF01938.20 gi|433590880|ref|YP_007280376.1| - 8.7e-05 22.4 0.9 0.00012 22.0 0.9 1.3 1 0 0 1 1 1 1 TRAM domain NfeD PF01957.18 gi|433590880|ref|YP_007280376.1| - 0.021 15.2 0.6 0.14 12.5 0.3 2.1 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding Na_H_antiporter PF03553.14 gi|433590881|ref|YP_007280377.1| - 4.5e-30 104.9 42.4 5.9e-16 58.6 24.7 2.3 1 1 1 2 2 2 2 Na+/H+ antiporter family TatD_DNase PF01026.21 gi|433590882|ref|YP_007280378.1| - 4.7e-18 65.5 0.0 2.8e-16 59.7 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase DUF2150 PF09920.9 gi|433590883|ref|YP_007280379.1| - 2.8e-71 239.4 7.2 3.1e-71 239.2 7.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) DDE_Tnp_IS66 PF03050.14 gi|433590884|ref|YP_007280380.1| - 2.7e-49 168.2 0.1 2.7e-49 168.2 0.1 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.12 gi|433590884|ref|YP_007280380.1| - 7.4e-09 36.1 7.8 2e-08 34.7 7.8 1.8 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.7 gi|433590884|ref|YP_007280380.1| - 9e-06 26.0 5.0 9e-06 26.0 5.0 2.7 3 0 0 3 3 1 1 zinc-finger binding domain of transposase IS66 MscS_porin PF12795.7 gi|433590884|ref|YP_007280380.1| - 9.7e-06 25.3 6.6 1.7e-05 24.5 6.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.16 gi|433590884|ref|YP_007280380.1| - 0.00055 20.4 7.2 0.0011 19.4 7.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF16 UPF0242 PF06785.11 gi|433590884|ref|YP_007280380.1| - 0.0015 18.7 13.2 0.0025 17.9 13.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus HSBP1 PF06825.12 gi|433590884|ref|YP_007280380.1| - 0.0024 17.7 6.2 0.016 15.0 0.8 2.6 1 1 0 2 2 2 1 Heat shock factor binding protein 1 SKA1 PF07160.12 gi|433590884|ref|YP_007280380.1| - 0.0035 17.2 1.0 0.0057 16.5 1.0 1.3 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 1 Herpes_UL14 PF03580.14 gi|433590884|ref|YP_007280380.1| - 0.0048 17.2 1.4 0.0088 16.3 1.4 1.4 1 0 0 1 1 1 1 Herpesvirus UL14-like protein Atg14 PF10186.9 gi|433590884|ref|YP_007280380.1| - 0.018 14.2 7.6 0.028 13.5 7.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DDE_Tnp_IS240 PF13610.6 gi|433590884|ref|YP_007280380.1| - 0.019 15.2 2.0 0.087 13.1 0.0 2.4 2 1 0 2 2 2 0 DDE domain YkyA PF10368.9 gi|433590884|ref|YP_007280380.1| - 0.021 14.5 9.5 0.035 13.8 9.5 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein HemX PF04375.14 gi|433590884|ref|YP_007280380.1| - 0.024 13.9 4.1 0.038 13.3 4.1 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase PKcGMP_CC PF16808.5 gi|433590884|ref|YP_007280380.1| - 0.026 14.4 26.3 0.13 12.1 6.8 2.6 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Fmp27_WPPW PF10359.9 gi|433590884|ref|YP_007280380.1| - 0.031 13.1 5.6 0.049 12.5 5.6 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Exonuc_VII_L PF02601.15 gi|433590884|ref|YP_007280380.1| - 0.036 13.6 3.6 0.064 12.8 3.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit ATG16 PF08614.11 gi|433590884|ref|YP_007280380.1| - 0.051 13.8 10.6 0.1 12.8 10.6 1.5 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|433590884|ref|YP_007280380.1| - 0.061 12.0 8.2 0.088 11.4 8.2 1.1 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|433590884|ref|YP_007280380.1| - 0.099 12.7 2.7 0.25 11.4 2.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon GAS PF13851.6 gi|433590884|ref|YP_007280380.1| - 0.11 11.9 9.7 0.2 11.0 9.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cortex-I_coil PF09304.10 gi|433590884|ref|YP_007280380.1| - 0.11 12.7 10.5 0.23 11.7 10.5 1.5 1 0 0 1 1 1 0 Cortexillin I, coiled coil Phage_GPO PF05929.11 gi|433590884|ref|YP_007280380.1| - 0.11 12.1 3.1 0.18 11.4 3.1 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF3552 PF12072.8 gi|433590884|ref|YP_007280380.1| - 0.11 11.9 15.6 0.2 11.1 15.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Terminase_4 PF05119.12 gi|433590884|ref|YP_007280380.1| - 0.14 12.6 0.7 0.73 10.3 0.2 2.3 2 0 0 2 2 2 0 Phage terminase, small subunit DUF1664 PF07889.12 gi|433590884|ref|YP_007280380.1| - 0.15 12.1 5.3 0.3 11.1 5.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|433590884|ref|YP_007280380.1| - 0.15 10.9 11.6 0.17 10.7 10.5 1.6 2 0 0 2 2 1 0 Spc7 kinetochore protein FliD_C PF07195.12 gi|433590884|ref|YP_007280380.1| - 0.17 11.3 3.8 0.26 10.7 3.8 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TMF_DNA_bd PF12329.8 gi|433590884|ref|YP_007280380.1| - 0.17 11.9 12.6 0.34 10.9 12.6 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.10 gi|433590884|ref|YP_007280380.1| - 0.18 12.0 5.5 0.39 10.9 5.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family CSN5_C PF18323.1 gi|433590884|ref|YP_007280380.1| - 0.19 12.7 0.7 5.4 8.0 0.8 2.6 2 0 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain FAM76 PF16046.5 gi|433590884|ref|YP_007280380.1| - 0.23 10.8 4.0 0.37 10.1 4.0 1.3 1 0 0 1 1 1 0 FAM76 protein WASH_WAHD PF11945.8 gi|433590884|ref|YP_007280380.1| - 0.27 10.7 7.2 0.39 10.2 7.2 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex DUF724 PF05266.14 gi|433590884|ref|YP_007280380.1| - 0.27 11.0 6.4 0.46 10.3 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Allexi_40kDa PF05549.11 gi|433590884|ref|YP_007280380.1| - 0.32 10.5 2.8 0.55 9.7 2.8 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3584 PF12128.8 gi|433590884|ref|YP_007280380.1| - 0.36 8.3 7.2 0.51 7.8 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TMPIT PF07851.13 gi|433590884|ref|YP_007280380.1| - 0.36 10.0 4.1 0.57 9.4 4.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein Flagellin_C PF00700.21 gi|433590884|ref|YP_007280380.1| - 0.39 11.1 1.2 0.79 10.1 1.2 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region ACCA PF03255.14 gi|433590884|ref|YP_007280380.1| - 0.5 10.2 5.0 1.3 8.9 5.0 1.7 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1910 PF08928.10 gi|433590884|ref|YP_007280380.1| - 0.66 10.0 3.8 1.7 8.6 3.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1910) LUC7 PF03194.15 gi|433590884|ref|YP_007280380.1| - 0.69 9.5 7.5 1.4 8.5 7.5 1.4 1 0 0 1 1 1 0 LUC7 N_terminus zf-FPG_IleRS PF06827.14 gi|433590884|ref|YP_007280380.1| - 0.81 9.6 4.3 8.7 6.3 0.2 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS ExsD PF16806.5 gi|433590884|ref|YP_007280380.1| - 1 9.3 5.1 14 5.6 4.3 2.1 2 0 0 2 2 2 0 Antiactivator protein ExsD DUF4407 PF14362.6 gi|433590884|ref|YP_007280380.1| - 1 8.7 3.5 1.7 7.9 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RmuC PF02646.16 gi|433590884|ref|YP_007280380.1| - 1.1 8.4 7.0 1.7 7.7 7.0 1.2 1 0 0 1 1 1 0 RmuC family FemAB PF02388.16 gi|433590884|ref|YP_007280380.1| - 1.1 8.0 6.1 1.7 7.4 6.1 1.1 1 0 0 1 1 1 0 FemAB family Fzo_mitofusin PF04799.13 gi|433590884|ref|YP_007280380.1| - 1.4 8.4 6.1 2.5 7.6 6.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region Zn-ribbon_8 PF09723.10 gi|433590884|ref|YP_007280380.1| - 1.6 8.9 5.5 14 5.9 0.8 2.7 2 0 0 2 2 2 0 Zinc ribbon domain DUF1465 PF07323.12 gi|433590884|ref|YP_007280380.1| - 1.8 8.4 6.9 1.4 8.7 3.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1465) DUF3450 PF11932.8 gi|433590884|ref|YP_007280380.1| - 2.1 7.6 15.5 1.5 8.1 10.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) DUF2203 PF09969.9 gi|433590884|ref|YP_007280380.1| - 2.1 9.1 8.1 5.8 7.7 6.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 gi|433590884|ref|YP_007280380.1| - 2.3 6.1 4.9 3.2 5.6 4.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MPS2 PF17060.5 gi|433590884|ref|YP_007280380.1| - 2.4 7.4 6.1 3.7 6.7 6.1 1.2 1 0 0 1 1 1 0 Monopolar spindle protein 2 Kre28 PF17097.5 gi|433590884|ref|YP_007280380.1| - 4 6.3 12.8 0.37 9.7 8.3 1.4 2 0 0 2 2 1 0 Spindle pole body component ABC_tran_CTD PF16326.5 gi|433590884|ref|YP_007280380.1| - 6.3 7.1 22.3 1 9.7 16.9 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain DLP_helical PF18709.1 gi|433590884|ref|YP_007280380.1| - 6.7 5.8 8.2 12 5.0 8.2 1.3 1 0 0 1 1 1 0 Dynamin-like helical domain HMG_CoA_synt_N PF01154.17 gi|433590886|ref|YP_007280382.1| - 4e-26 91.9 0.0 6.5e-26 91.3 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|433590886|ref|YP_007280382.1| - 1.4e-23 83.9 0.0 2.4e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal MAF_flag10 PF01973.18 gi|433590886|ref|YP_007280382.1| - 0.14 11.9 0.0 1.1 9.0 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF115 AI-2E_transport PF01594.16 gi|433590887|ref|YP_007280383.1| - 3.5e-41 141.4 32.6 4.3e-41 141.2 32.6 1.0 1 0 0 1 1 1 1 AI-2E family transporter DUF2270 PF10028.9 gi|433590888|ref|YP_007280384.1| - 3.1e-66 222.5 2.7 3.7e-66 222.2 2.7 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) DUF998 PF06197.13 gi|433590888|ref|YP_007280384.1| - 0.002 17.7 4.8 0.0037 16.9 1.7 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF998) DUF3784 PF12650.7 gi|433590888|ref|YP_007280384.1| - 0.1 12.8 1.1 12 6.1 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) MotA_ExbB PF01618.16 gi|433590888|ref|YP_007280384.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 MotA/TolQ/ExbB proton channel family DUF2207 PF09972.9 gi|433590888|ref|YP_007280384.1| - 0.14 10.9 0.3 3.9 6.1 0.2 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) FtsK_4TM PF13491.6 gi|433590888|ref|YP_007280384.1| - 1.3 8.7 6.8 0.21 11.2 0.3 2.3 2 1 0 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE GDC-P PF02347.16 gi|433590889|ref|YP_007280385.1| - 4.8e-103 345.3 0.0 5.7e-103 345.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein DUF1776 PF08643.10 gi|433590889|ref|YP_007280385.1| - 0.16 11.3 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) Cys_Met_Meta_PP PF01053.20 gi|433590889|ref|YP_007280385.1| - 0.2 10.2 0.0 0.3 9.6 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|433590890|ref|YP_007280386.1| - 1.5e-10 40.6 0.0 2.1e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|433590890|ref|YP_007280386.1| - 2.6e-05 23.7 0.0 4.8e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.16 gi|433590890|ref|YP_007280386.1| - 6.8e-05 21.9 0.0 0.00031 19.7 0.0 1.9 1 1 0 1 1 1 1 Glycine cleavage system P-protein DegT_DnrJ_EryC1 PF01041.17 gi|433590890|ref|YP_007280386.1| - 0.0041 16.5 0.0 0.0067 15.8 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|433590890|ref|YP_007280386.1| - 0.042 13.0 0.0 0.059 12.5 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|433590890|ref|YP_007280386.1| - 0.19 10.2 0.0 0.27 9.7 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme zf-H2C2_2 PF13465.6 gi|433590892|ref|YP_007280388.1| - 7.4e-06 26.2 1.3 0.0028 18.0 0.1 2.1 2 0 0 2 2 2 2 Zinc-finger double domain zf-C2H2 PF00096.26 gi|433590892|ref|YP_007280388.1| - 0.00015 22.0 1.4 0.14 12.7 0.1 2.2 2 0 0 2 2 2 2 Zinc finger, C2H2 type zinc_ribbon_9 PF14369.6 gi|433590892|ref|YP_007280388.1| - 0.00082 19.6 0.7 0.15 12.4 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon DUF1272 PF06906.11 gi|433590892|ref|YP_007280388.1| - 0.0019 18.3 0.1 0.26 11.4 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1272) Zn_Tnp_IS1595 PF12760.7 gi|433590892|ref|YP_007280388.1| - 0.0036 17.2 0.6 0.0053 16.7 0.6 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Rubredoxin PF00301.20 gi|433590892|ref|YP_007280388.1| - 0.0039 17.2 5.1 0.74 9.9 0.1 2.3 2 1 0 2 2 2 2 Rubredoxin zf_Rg PF17915.1 gi|433590892|ref|YP_007280388.1| - 0.0098 15.3 0.2 0.13 11.7 0.0 2.0 2 0 0 2 2 2 1 Reverse gyrase zinc finger Lar_restr_allev PF14354.6 gi|433590892|ref|YP_007280388.1| - 0.01 16.2 0.4 0.012 16.0 0.4 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-IS66 PF13005.7 gi|433590892|ref|YP_007280388.1| - 0.011 16.1 0.6 1.4 9.4 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TFIIS_C PF01096.18 gi|433590892|ref|YP_007280388.1| - 0.03 14.2 1.6 0.19 11.6 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_S27e PF01667.17 gi|433590892|ref|YP_007280388.1| - 0.043 13.5 0.5 0.68 9.7 0.0 2.0 1 1 1 2 2 2 0 Ribosomal protein S27 DnaJ_CXXCXGXG PF00684.19 gi|433590892|ref|YP_007280388.1| - 0.05 14.0 0.5 0.076 13.4 0.5 1.4 1 1 0 1 1 1 0 DnaJ central domain zf-Mss51 PF13824.6 gi|433590892|ref|YP_007280388.1| - 0.059 13.5 4.0 2.6 8.2 0.5 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF983 PF06170.12 gi|433590892|ref|YP_007280388.1| - 0.067 13.6 0.5 2.8 8.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF983) DUF1610 PF07754.11 gi|433590892|ref|YP_007280388.1| - 0.067 13.2 2.4 8.1 6.5 1.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1 PF03811.13 gi|433590892|ref|YP_007280388.1| - 0.072 12.8 0.3 6.7 6.5 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain DUF3268 PF11672.8 gi|433590892|ref|YP_007280388.1| - 0.077 13.3 0.1 0.083 13.2 0.1 1.0 1 0 0 1 1 1 0 zinc-finger-containing domain Auto_anti-p27 PF06677.12 gi|433590892|ref|YP_007280388.1| - 0.089 13.0 0.4 14 5.9 0.1 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_ribbon_SprT PF17283.2 gi|433590892|ref|YP_007280388.1| - 0.094 12.6 1.5 2.5 8.1 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|433590892|ref|YP_007280388.1| - 0.1 12.4 3.0 2.6 7.9 0.5 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|433590892|ref|YP_007280388.1| - 0.19 11.4 4.2 0.92 9.3 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DNA_ligase_ZBD PF03119.16 gi|433590892|ref|YP_007280388.1| - 0.22 11.6 4.1 6.1 7.0 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|433590892|ref|YP_007280388.1| - 0.36 11.0 4.8 1.7 8.8 0.7 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Anti-TRAP PF15777.5 gi|433590892|ref|YP_007280388.1| - 0.36 10.8 3.3 0.7 9.9 0.2 2.0 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein CpXC PF14353.6 gi|433590892|ref|YP_007280388.1| - 0.43 10.6 2.2 19 5.3 2.3 2.1 1 1 0 1 1 1 0 CpXC protein Cob_adeno_trans PF01923.18 gi|433590893|ref|YP_007280389.1| - 1.2e-55 188.2 0.0 1.3e-55 188.0 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase ABATE PF07336.11 gi|433590893|ref|YP_007280389.1| - 0.53 11.0 6.3 0.6 10.8 5.0 1.7 1 1 1 2 2 2 0 Putative stress-induced transcription regulator DoxX PF07681.12 gi|433590895|ref|YP_007280391.1| - 3.7e-13 49.8 9.9 3.7e-13 49.8 9.9 1.6 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.11 gi|433590895|ref|YP_007280391.1| - 0.00022 21.4 0.4 0.0016 18.6 0.2 1.9 1 1 1 2 2 2 1 HR-like lesion-inducing DoxX_2 PF13564.6 gi|433590895|ref|YP_007280391.1| - 0.39 10.9 17.6 0.076 13.1 9.3 2.4 1 1 0 2 2 2 0 DoxX-like family EIIC-GAT PF03611.14 gi|433590895|ref|YP_007280391.1| - 0.58 9.2 7.4 0.72 8.9 7.4 1.1 1 0 0 1 1 1 0 PTS system sugar-specific permease component Adenine_deam_C PF13382.6 gi|433590896|ref|YP_007280392.1| - 6.1e-33 113.5 0.0 1.1e-32 112.8 0.0 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|433590896|ref|YP_007280392.1| - 4.8e-16 59.0 0.6 9.8e-15 54.7 0.6 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|433590896|ref|YP_007280392.1| - 3.4e-10 40.0 3.7 9.6e-06 25.3 0.3 3.0 1 1 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|433590896|ref|YP_007280392.1| - 0.22 10.8 0.0 0.35 10.2 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase DDE_5 PF13546.6 gi|433590898|ref|YP_007280394.1| - 8.6e-27 94.2 0.0 1.4e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|433590898|ref|YP_007280394.1| - 2.5e-12 46.9 0.0 3.8e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433590898|ref|YP_007280394.1| - 0.00016 21.0 0.0 0.00069 18.9 0.0 1.9 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 Vps8 PF12816.7 gi|433590899|ref|YP_007280395.1| - 0.03 13.8 0.0 6.4 6.2 0.0 2.3 2 0 0 2 2 2 0 Golgi CORVET complex core vacuolar protein 8 MgtE PF01769.16 gi|433590899|ref|YP_007280395.1| - 0.37 11.2 11.8 1.8 9.0 11.5 2.3 1 1 0 1 1 1 0 Divalent cation transporter TctB PF07331.11 gi|433590899|ref|YP_007280395.1| - 6.7 7.0 15.0 3e+02 1.7 15.0 2.2 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family HTH_10 PF04967.12 gi|433590902|ref|YP_007280398.1| - 3.1e-17 62.1 0.0 5.4e-17 61.3 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|433590902|ref|YP_007280398.1| - 2.7e-07 30.6 4.0 2.7e-07 30.6 4.0 1.5 2 0 0 2 2 2 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|433590902|ref|YP_007280398.1| - 0.00018 21.4 0.6 0.0028 17.5 0.0 2.6 2 1 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|433590902|ref|YP_007280398.1| - 0.00031 20.2 0.0 0.00068 19.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433590902|ref|YP_007280398.1| - 0.00053 19.8 0.9 0.017 15.0 0.0 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|433590902|ref|YP_007280398.1| - 0.0033 17.6 0.0 0.0098 16.1 0.0 1.8 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|433590902|ref|YP_007280398.1| - 0.0041 17.2 0.0 0.012 15.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433590902|ref|YP_007280398.1| - 0.0083 15.9 0.2 0.025 14.4 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain PuR_N PF09182.10 gi|433590902|ref|YP_007280398.1| - 0.019 14.9 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal MarR PF01047.22 gi|433590902|ref|YP_007280398.1| - 0.027 14.4 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|433590902|ref|YP_007280398.1| - 0.027 14.4 0.2 0.22 11.5 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Phage_CI_repr PF07022.13 gi|433590902|ref|YP_007280398.1| - 0.071 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain GntR PF00392.21 gi|433590902|ref|YP_007280398.1| - 0.12 12.0 0.1 1.2 8.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family UPF0122 PF04297.14 gi|433590902|ref|YP_007280398.1| - 0.2 11.9 0.1 0.36 11.1 0.1 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DrsE PF02635.15 gi|433590903|ref|YP_007280399.1| - 5.3e-06 26.8 0.0 6.5e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family Fe_dep_repress PF01325.19 gi|433590905|ref|YP_007280401.1| - 3.2e-12 46.5 0.0 5.7e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|433590905|ref|YP_007280401.1| - 0.00066 19.5 0.1 0.0014 18.5 0.1 1.6 1 1 0 1 1 1 1 MarR family Fe_dep_repr_C PF02742.15 gi|433590905|ref|YP_007280401.1| - 0.0012 18.9 0.0 0.0023 18.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR PF01047.22 gi|433590905|ref|YP_007280401.1| - 0.0077 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|433590905|ref|YP_007280401.1| - 0.014 15.4 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|433590905|ref|YP_007280401.1| - 0.023 14.2 0.0 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding BAT PF15915.5 gi|433590905|ref|YP_007280401.1| - 0.045 13.6 0.8 0.23 11.3 0.0 2.1 1 1 1 2 2 2 0 GAF and HTH_10 associated domain HTH_IclR PF09339.10 gi|433590905|ref|YP_007280401.1| - 0.052 13.3 0.2 0.15 11.8 0.2 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain TetR_N PF00440.23 gi|433590905|ref|YP_007280401.1| - 0.12 12.2 0.1 0.23 11.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family PEP-utilizers PF00391.23 gi|433590907|ref|YP_007280403.1| - 0.029 14.1 0.2 0.05 13.3 0.2 1.4 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain MatE PF01554.18 gi|433590908|ref|YP_007280404.1| - 2.1e-44 151.0 14.4 2.9e-22 79.0 9.7 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|433590908|ref|YP_007280404.1| - 1.4e-08 34.9 7.1 1.4e-08 34.9 7.1 4.1 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|433590908|ref|YP_007280404.1| - 1.7e-05 23.7 7.4 4.1e-05 22.4 7.4 1.6 1 0 0 1 1 1 1 Lipid II flippase MurJ AAA_23 PF13476.6 gi|433590909|ref|YP_007280405.1| - 2.2e-07 31.6 8.7 2.2e-07 31.6 8.7 4.1 1 1 0 2 2 1 1 AAA domain Spc7 PF08317.11 gi|433590909|ref|YP_007280405.1| - 2.5e-06 26.6 53.7 0.0042 16.0 5.3 4.3 2 2 2 4 4 4 4 Spc7 kinetochore protein DHR10 PF18595.1 gi|433590909|ref|YP_007280405.1| - 5.4e-06 26.4 67.3 0.0045 17.0 6.0 5.3 2 2 3 5 5 5 3 Designed helical repeat protein 10 domain CENP-F_leu_zip PF10473.9 gi|433590909|ref|YP_007280405.1| - 2.1e-05 24.6 59.5 0.021 14.8 4.2 4.5 2 2 2 4 4 4 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.8 gi|433590909|ref|YP_007280405.1| - 2.7e-05 22.0 44.1 0.00013 19.7 22.6 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) TMF_TATA_bd PF12325.8 gi|433590909|ref|YP_007280405.1| - 0.00046 20.4 54.4 0.039 14.2 7.9 4.7 3 1 1 4 4 4 2 TATA element modulatory factor 1 TATA binding GAS PF13851.6 gi|433590909|ref|YP_007280405.1| - 0.0015 17.9 41.2 0.053 12.9 4.0 4.0 2 2 2 4 4 4 2 Growth-arrest specific micro-tubule binding DUF3450 PF11932.8 gi|433590909|ref|YP_007280405.1| - 0.0021 17.4 5.5 0.0021 17.4 5.5 4.2 3 1 1 4 4 4 3 Protein of unknown function (DUF3450) DUF1664 PF07889.12 gi|433590909|ref|YP_007280405.1| - 0.0035 17.4 22.2 0.3 11.1 1.8 4.9 3 1 0 4 4 4 2 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|433590909|ref|YP_007280405.1| - 0.0039 17.2 15.9 1.1 9.2 0.6 4.8 3 2 2 5 5 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.9 gi|433590909|ref|YP_007280405.1| - 0.0048 16.0 40.0 0.38 9.8 13.6 4.1 2 2 2 4 4 4 3 Vacuolar sorting 38 and autophagy-related subunit 14 APG6_N PF17675.1 gi|433590909|ref|YP_007280405.1| - 0.0067 16.9 74.4 0.075 13.6 12.2 5.0 2 2 3 5 5 5 1 Apg6 coiled-coil region FPP PF05911.11 gi|433590909|ref|YP_007280405.1| - 0.015 13.5 39.8 0.041 12.1 9.0 2.9 2 1 0 2 2 2 0 Filament-like plant protein, long coiled-coil HemX PF04375.14 gi|433590909|ref|YP_007280405.1| - 0.015 14.6 27.1 0.02 14.2 5.9 4.3 2 2 2 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase AAA_13 PF13166.6 gi|433590909|ref|YP_007280405.1| - 0.016 13.9 31.6 0.043 12.5 5.6 3.0 2 1 1 3 3 3 0 AAA domain NPV_P10 PF05531.12 gi|433590909|ref|YP_007280405.1| - 0.018 15.5 22.0 3.7 8.1 0.9 6.7 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Spectrin PF00435.21 gi|433590909|ref|YP_007280405.1| - 0.074 13.5 39.6 0.32 11.5 7.7 5.7 2 2 3 5 5 5 0 Spectrin repeat Filament PF00038.21 gi|433590909|ref|YP_007280405.1| - 0.079 12.5 54.6 0.039 13.5 11.8 4.4 2 2 2 4 4 4 0 Intermediate filament protein TPR_MLP1_2 PF07926.12 gi|433590909|ref|YP_007280405.1| - 0.11 12.6 57.2 0.059 13.4 19.4 4.9 2 2 2 4 4 4 0 TPR/MLP1/MLP2-like protein FliD_N PF02465.18 gi|433590909|ref|YP_007280405.1| - 0.12 13.1 6.8 84 4.0 0.0 5.2 2 2 1 4 4 4 0 Flagellar hook-associated protein 2 N-terminus DUF2730 PF10805.8 gi|433590909|ref|YP_007280405.1| - 0.13 12.3 0.2 0.13 12.3 0.2 5.1 3 2 3 6 6 5 0 Protein of unknown function (DUF2730) DUF4407 PF14362.6 gi|433590909|ref|YP_007280405.1| - 0.23 10.8 42.1 1.1 8.5 2.3 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) DivIC PF04977.15 gi|433590909|ref|YP_007280405.1| - 0.32 10.8 63.7 1.8 8.4 1.6 8.6 2 2 6 8 8 8 0 Septum formation initiator FlaC_arch PF05377.11 gi|433590909|ref|YP_007280405.1| - 0.35 11.3 36.8 0.26 11.7 2.4 7.9 5 2 3 8 8 8 0 Flagella accessory protein C (FlaC) Seryl_tRNA_N PF02403.22 gi|433590909|ref|YP_007280405.1| - 0.49 10.6 46.2 0.035 14.3 6.6 5.2 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Fib_alpha PF08702.10 gi|433590909|ref|YP_007280405.1| - 0.5 10.5 22.6 0.28 11.4 1.9 4.3 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family Occludin_ELL PF07303.13 gi|433590909|ref|YP_007280405.1| - 0.51 11.1 20.9 4.9 7.9 3.1 5.2 2 2 4 6 6 6 0 Occludin homology domain AAA_15 PF13175.6 gi|433590909|ref|YP_007280405.1| - 0.63 9.7 2.9 7.2 6.2 3.0 2.5 1 1 0 1 1 1 0 AAA ATPase domain MAD PF05557.13 gi|433590909|ref|YP_007280405.1| - 0.67 8.2 45.1 0.1 11.0 8.9 2.7 2 1 0 2 2 2 0 Mitotic checkpoint protein Cep57_CLD PF14073.6 gi|433590909|ref|YP_007280405.1| - 0.68 9.9 45.6 0.85 9.6 25.0 2.7 2 1 1 3 3 3 0 Centrosome localisation domain of Cep57 FlxA PF14282.6 gi|433590909|ref|YP_007280405.1| - 1.2 9.1 16.8 0.98 9.4 5.1 3.9 3 1 1 4 4 4 0 FlxA-like protein MscS_porin PF12795.7 gi|433590909|ref|YP_007280405.1| - 1.3 8.5 52.2 2.7 7.5 11.9 3.5 2 2 1 3 3 3 0 Mechanosensitive ion channel porin domain Myosin_tail_1 PF01576.19 gi|433590909|ref|YP_007280405.1| - 1.6 6.4 70.9 0.023 12.6 21.5 3.1 2 1 1 3 3 3 0 Myosin tail ABC_tran_CTD PF16326.5 gi|433590909|ref|YP_007280405.1| - 1.8 8.8 72.2 2.1 8.7 2.9 7.1 2 2 4 6 6 6 0 ABC transporter C-terminal domain DASH_Spc19 PF08287.11 gi|433590909|ref|YP_007280405.1| - 1.9 8.4 43.8 5.9 6.8 19.0 5.3 1 1 2 3 3 3 0 Spc19 DUF16 PF01519.16 gi|433590909|ref|YP_007280405.1| - 2 8.9 29.1 3.9 8.0 2.7 4.8 2 2 3 5 5 5 0 Protein of unknown function DUF16 YtxH PF12732.7 gi|433590909|ref|YP_007280405.1| - 2.1 8.9 5.8 2.5e+02 2.3 5.9 3.7 1 1 0 1 1 1 0 YtxH-like protein YPEB PF14620.6 gi|433590909|ref|YP_007280405.1| - 2.7 7.2 17.2 0.77 9.0 1.1 3.0 2 1 1 3 3 3 0 YpeB sporulation KASH_CCD PF14662.6 gi|433590909|ref|YP_007280405.1| - 2.9 7.7 46.3 0.08 12.8 9.2 4.1 3 1 1 4 4 4 0 Coiled-coil region of CCDC155 or KASH Phage_GP20 PF06810.11 gi|433590909|ref|YP_007280405.1| - 3 7.7 38.3 3 7.6 5.1 5.0 2 2 3 5 5 5 0 Phage minor structural protein GP20 Med9 PF07544.13 gi|433590909|ref|YP_007280405.1| - 3.2 7.9 35.1 0.41 10.8 3.4 5.2 4 1 1 5 5 5 0 RNA polymerase II transcription mediator complex subunit 9 COG2 PF06148.11 gi|433590909|ref|YP_007280405.1| - 3.5 7.7 33.5 0.062 13.4 3.9 5.7 2 2 4 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 KxDL PF10241.9 gi|433590909|ref|YP_007280405.1| - 3.7 7.9 16.2 0.19 12.0 3.9 4.0 4 1 1 5 5 3 0 Uncharacterized conserved protein PLAC9 PF15205.6 gi|433590909|ref|YP_007280405.1| - 4.4 7.8 12.9 3 8.3 0.0 4.5 4 1 1 5 5 4 0 Placenta-specific protein 9 Exonuc_VII_L PF02601.15 gi|433590909|ref|YP_007280405.1| - 4.5 6.8 26.3 2.4 7.7 2.9 3.0 1 1 1 2 2 2 0 Exonuclease VII, large subunit TMPIT PF07851.13 gi|433590909|ref|YP_007280405.1| - 5 6.3 19.8 2.3 7.4 3.8 3.2 2 1 1 3 3 3 0 TMPIT-like protein FUSC PF04632.12 gi|433590909|ref|YP_007280405.1| - 6.2 5.2 41.4 0.038 12.5 11.8 3.1 1 1 1 3 3 3 0 Fusaric acid resistance protein family BLOC1_2 PF10046.9 gi|433590909|ref|YP_007280405.1| - 6.6 7.1 33.7 27 5.2 2.9 6.2 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Prominin PF05478.11 gi|433590909|ref|YP_007280405.1| - 7.7 4.3 9.4 7 4.5 4.0 2.9 2 2 0 2 2 2 0 Prominin DUF724 PF05266.14 gi|433590909|ref|YP_007280405.1| - 9 6.1 37.7 0.23 11.3 3.7 4.4 2 2 1 4 4 4 0 Protein of unknown function (DUF724) Prefoldin_2 PF01920.20 gi|433590909|ref|YP_007280405.1| - 9.6 6.2 50.5 4.8 7.2 1.6 7.9 3 3 1 4 4 4 0 Prefoldin subunit PTA_PTB PF01515.19 gi|433590911|ref|YP_007280407.1| - 2.5e-91 306.3 0.0 4e-91 305.7 0.0 1.3 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|433590911|ref|YP_007280407.1| - 6.5e-31 107.5 0.2 1.4e-28 99.9 0.2 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|433590911|ref|YP_007280407.1| - 3.3e-22 79.0 1.6 9.6e-22 77.5 1.6 1.8 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain ThiF PF00899.21 gi|433590911|ref|YP_007280407.1| - 0.081 12.3 0.1 0.19 11.1 0.1 1.6 1 0 0 1 1 1 0 ThiF family MFS_1 PF07690.16 gi|433590912|ref|YP_007280408.1| - 3.3e-38 131.5 52.8 7.2e-24 84.4 33.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PTR2 PF00854.21 gi|433590912|ref|YP_007280408.1| - 0.77 8.5 9.2 0.068 12.0 3.6 2.0 2 0 0 2 2 2 0 POT family ADH_N PF08240.12 gi|433590913|ref|YP_007280409.1| - 4.1e-27 94.2 0.4 4.1e-27 94.2 0.4 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|433590913|ref|YP_007280409.1| - 3e-23 82.2 0.2 4.5e-23 81.6 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|433590913|ref|YP_007280409.1| - 5e-05 22.7 0.3 7.8e-05 22.1 0.3 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N_2 PF13602.6 gi|433590913|ref|YP_007280409.1| - 7.7e-05 23.8 0.0 0.00012 23.1 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|433590913|ref|YP_007280409.1| - 0.033 13.6 0.0 0.058 12.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|433590913|ref|YP_007280409.1| - 0.042 13.6 0.0 0.061 13.0 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Methyltransf_25 PF13649.6 gi|433590913|ref|YP_007280409.1| - 0.05 14.3 0.2 0.1 13.3 0.2 1.5 1 0 0 1 1 1 0 Methyltransferase domain Prot_ATP_ID_OB PF16450.5 gi|433590913|ref|YP_007280409.1| - 0.073 13.0 0.0 2.1 8.3 0.0 2.4 2 0 0 2 2 2 0 Proteasomal ATPase OB C-terminal domain GFO_IDH_MocA PF01408.22 gi|433590914|ref|YP_007280410.1| - 1.8e-24 86.9 0.0 3.1e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|433590914|ref|YP_007280410.1| - 9.5e-06 25.6 0.0 1.9e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|433590914|ref|YP_007280410.1| - 0.035 14.8 0.0 0.067 13.9 0.0 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|433590914|ref|YP_007280410.1| - 0.74 9.4 1.7 5.3 6.6 1.6 2.0 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lar_restr_allev PF14354.6 gi|433590915|ref|YP_007280411.1| - 0.1 13.0 2.9 1.7 9.1 3.0 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-CCHC_2 PF13696.6 gi|433590915|ref|YP_007280411.1| - 0.14 12.0 0.1 0.14 12.0 0.1 1.7 2 0 0 2 2 2 0 Zinc knuckle zf-nanos PF05741.13 gi|433590915|ref|YP_007280411.1| - 1.8 8.9 5.1 1.1 9.6 2.3 2.1 2 1 0 2 2 2 0 Nanos RNA binding domain Gas_vesicle PF00741.18 gi|433590916|ref|YP_007280412.1| - 9.1e-13 48.1 8.3 1.2e-12 47.8 8.3 1.2 1 0 0 1 1 1 1 Gas vesicle protein GvpL_GvpF PF06386.11 gi|433590917|ref|YP_007280413.1| - 3.6e-78 262.9 0.6 4.2e-78 262.7 0.6 1.0 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF GvpK PF05121.12 gi|433590918|ref|YP_007280414.1| - 4.2e-23 81.2 6.8 5.6e-23 80.8 6.8 1.1 1 0 0 1 1 1 1 Gas vesicle protein K Jnk-SapK_ap_N PF09744.9 gi|433590918|ref|YP_007280414.1| - 0.00072 19.8 0.3 0.00088 19.5 0.3 1.1 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 HAMP_N3 PF18575.1 gi|433590918|ref|YP_007280414.1| - 0.0095 15.5 0.0 0.61 9.7 0.0 2.9 3 0 0 3 3 3 1 HAMP N-terminal domain 3 DLP_helical PF18709.1 gi|433590918|ref|YP_007280414.1| - 0.026 13.8 0.2 0.03 13.6 0.2 1.1 1 0 0 1 1 1 0 Dynamin-like helical domain Val_tRNA-synt_C PF10458.9 gi|433590918|ref|YP_007280414.1| - 0.041 14.2 0.4 0.079 13.2 0.4 1.4 1 0 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm TPD52 PF04201.15 gi|433590918|ref|YP_007280414.1| - 0.051 13.2 0.5 0.076 12.6 0.5 1.2 1 0 0 1 1 1 0 Tumour protein D52 family Csm1_N PF18504.1 gi|433590918|ref|YP_007280414.1| - 0.061 13.7 0.8 0.095 13.0 0.8 1.3 1 0 0 1 1 1 0 Csm1 N-terminal domain RNA12 PF10443.9 gi|433590918|ref|YP_007280414.1| - 0.063 12.0 0.4 0.071 11.8 0.4 1.1 1 0 0 1 1 1 0 RNA12 protein cwf21 PF08312.12 gi|433590918|ref|YP_007280414.1| - 0.065 13.4 7.2 1.5 9.0 1.4 2.4 2 0 0 2 2 2 0 cwf21 domain Glu-tRNAGln PF02686.15 gi|433590918|ref|YP_007280414.1| - 0.077 13.3 1.0 0.12 12.7 1.0 1.4 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit FlxA PF14282.6 gi|433590918|ref|YP_007280414.1| - 0.12 12.3 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 FlxA-like protein Gas_vesicle PF00741.18 gi|433590919|ref|YP_007280415.1| - 3.3e-13 49.5 4.5 4.6e-13 49.1 4.5 1.2 1 0 0 1 1 1 1 Gas vesicle protein BUD22 PF09073.10 gi|433590919|ref|YP_007280415.1| - 3.4 6.9 10.4 3.8 6.7 10.4 1.1 1 0 0 1 1 1 0 BUD22 HSP20 PF00011.21 gi|433590921|ref|YP_007280417.1| - 8.9e-05 22.6 0.1 0.056 13.6 0.1 2.2 1 1 1 2 2 2 2 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|433590921|ref|YP_007280417.1| - 0.076 12.6 0.9 0.73 9.4 0.2 2.5 2 1 0 2 2 2 0 HSP20-like domain found in ArsA GvpG PF05120.12 gi|433590922|ref|YP_007280418.1| - 9.1e-05 22.4 0.7 0.00011 22.2 0.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein G THOC7 PF05615.13 gi|433590922|ref|YP_007280418.1| - 0.0091 16.3 0.7 0.0095 16.2 0.7 1.1 1 0 0 1 1 1 1 Tho complex subunit 7 GvpL_GvpF PF06386.11 gi|433590923|ref|YP_007280419.1| - 1.4e-42 146.3 5.4 6.6e-26 91.7 1.1 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF Gas_vesicle PF00741.18 gi|433590924|ref|YP_007280420.1| - 8.6e-17 61.0 6.7 1.2e-16 60.6 6.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein AAA_5 PF07728.14 gi|433590925|ref|YP_007280421.1| - 2.8e-15 56.5 0.0 4e-14 52.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|433590925|ref|YP_007280421.1| - 3.3e-06 26.8 0.6 9.3e-06 25.3 0.2 2.0 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|433590925|ref|YP_007280421.1| - 0.00017 22.0 0.0 0.00033 21.1 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|433590925|ref|YP_007280421.1| - 0.00085 19.1 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.11 gi|433590925|ref|YP_007280421.1| - 0.0022 17.9 0.0 0.0046 16.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|433590925|ref|YP_007280421.1| - 0.0035 17.1 0.0 0.71 9.6 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain PhoH PF02562.16 gi|433590925|ref|YP_007280421.1| - 0.0054 16.2 0.0 0.016 14.7 0.0 1.7 2 0 0 2 2 2 1 PhoH-like protein Zeta_toxin PF06414.12 gi|433590925|ref|YP_007280421.1| - 0.013 14.7 1.0 0.61 9.3 0.0 3.3 4 0 0 4 4 4 0 Zeta toxin AAA_16 PF13191.6 gi|433590925|ref|YP_007280421.1| - 0.016 15.6 0.0 0.027 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain IPT PF01745.16 gi|433590925|ref|YP_007280421.1| - 0.018 14.4 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase AAA_7 PF12775.7 gi|433590925|ref|YP_007280421.1| - 0.029 13.9 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|433590925|ref|YP_007280421.1| - 0.03 14.2 0.0 0.061 13.2 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Sigma54_activ_2 PF14532.6 gi|433590925|ref|YP_007280421.1| - 0.033 14.3 0.0 0.068 13.3 0.0 1.5 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_9 PF12781.7 gi|433590925|ref|YP_007280421.1| - 0.037 13.1 0.0 0.059 12.5 0.0 1.2 1 0 0 1 1 1 0 ATP-binding dynein motor region ABC_tran PF00005.27 gi|433590925|ref|YP_007280421.1| - 0.066 13.7 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 ABC transporter SRA1 PF07304.11 gi|433590925|ref|YP_007280421.1| - 0.14 11.9 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Steroid receptor RNA activator (SRA1) GvpO PF05800.11 gi|433590926|ref|YP_007280422.1| - 1.4e-29 101.8 1.2 2.9e-29 100.9 1.2 1.5 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO zf-CHY PF05495.12 gi|433590928|ref|YP_007280424.1| - 2.2e-12 47.3 4.6 3.2e-12 46.8 4.6 1.2 1 0 0 1 1 1 1 CHY zinc finger C1_2 PF03107.16 gi|433590928|ref|YP_007280424.1| - 0.0026 18.0 0.3 0.0026 18.0 0.3 2.2 2 0 0 2 2 2 1 C1 domain DZR PF12773.7 gi|433590928|ref|YP_007280424.1| - 0.0041 17.1 8.9 0.035 14.1 8.9 2.2 1 1 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|433590928|ref|YP_007280424.1| - 0.071 13.2 7.5 1.5 9.0 0.2 2.8 3 1 0 3 3 3 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|433590928|ref|YP_007280424.1| - 0.45 10.5 4.2 1.3 9.0 0.1 2.4 3 0 0 3 3 3 0 Putative transposase DNA-binding domain zf-HIT PF04438.16 gi|433590928|ref|YP_007280424.1| - 0.8 9.6 7.7 0.21 11.5 2.5 2.6 2 1 0 2 2 2 0 HIT zinc finger HypA PF01155.19 gi|433590928|ref|YP_007280424.1| - 0.92 9.5 5.2 2.1 8.4 5.2 1.8 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MutS_V PF00488.21 gi|433590929|ref|YP_007280425.1| - 1.5e-78 263.1 0.4 2.4e-78 262.5 0.4 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|433590929|ref|YP_007280425.1| - 5.7e-41 140.8 1.3 1e-40 140.0 1.3 1.4 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|433590929|ref|YP_007280425.1| - 5.7e-35 120.0 0.0 1.1e-34 119.0 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|433590929|ref|YP_007280425.1| - 3e-32 110.8 0.1 7.2e-32 109.6 0.1 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|433590929|ref|YP_007280425.1| - 1.8e-13 51.0 0.0 9.9e-13 48.6 0.0 2.2 3 0 0 3 3 3 1 MutS domain II AAA_14 PF13173.6 gi|433590929|ref|YP_007280425.1| - 0.024 14.7 0.0 0.087 12.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|433590929|ref|YP_007280425.1| - 0.041 13.5 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|433590929|ref|YP_007280425.1| - 0.087 13.3 0.0 0.25 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|433590929|ref|YP_007280425.1| - 0.12 12.1 0.0 0.35 10.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3784 PF12650.7 gi|433590930|ref|YP_007280426.1| - 0.011 15.9 2.0 0.013 15.6 2.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) DUF2484 PF10658.9 gi|433590930|ref|YP_007280426.1| - 0.12 12.7 6.3 0.13 12.6 6.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2484) DUF308 PF03729.13 gi|433590930|ref|YP_007280426.1| - 0.18 12.1 9.5 0.32 11.4 9.5 1.5 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF2892 PF11127.8 gi|433590930|ref|YP_007280426.1| - 1 9.4 6.5 1.2 9.2 6.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) TMEM51 PF15345.6 gi|433590930|ref|YP_007280426.1| - 3.3 7.5 4.4 18 5.1 2.0 2.0 2 0 0 2 2 2 0 Transmembrane protein 51 NucS PF01939.16 gi|433590931|ref|YP_007280427.1| - 2.4e-69 233.2 0.0 2.7e-69 233.0 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS Mrr_cat PF04471.12 gi|433590931|ref|YP_007280427.1| - 0.0073 16.3 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease YhcG_C PF06250.11 gi|433590931|ref|YP_007280427.1| - 0.015 15.1 0.0 0.037 13.9 0.0 1.6 2 0 0 2 2 2 0 YhcG PDDEXK nuclease domain PLC-beta_C PF08703.10 gi|433590932|ref|YP_007280428.1| - 0.0081 16.2 1.6 0.0081 16.2 1.6 1.4 2 0 0 2 2 2 1 PLC-beta C terminal OmpH PF03938.14 gi|433590932|ref|YP_007280428.1| - 0.021 15.2 2.2 0.021 15.2 2.2 2.0 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) PAS_6 PF08348.11 gi|433590932|ref|YP_007280428.1| - 0.05 13.5 0.2 9.8 6.1 0.1 2.4 2 1 1 3 3 3 0 YheO-like PAS domain PsbQ PF05757.11 gi|433590932|ref|YP_007280428.1| - 0.13 12.0 0.1 0.17 11.6 0.1 1.2 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) TAT_signal PF10518.9 gi|433590932|ref|YP_007280428.1| - 0.21 11.5 5.6 0.47 10.4 5.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4407 PF14362.6 gi|433590932|ref|YP_007280428.1| - 0.25 10.7 2.0 0.33 10.3 2.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) KH_7 PF17214.3 gi|433590934|ref|YP_007280430.1| - 1.9e-33 114.2 0.2 8.5e-30 102.5 0.1 2.8 2 0 0 2 2 2 2 KH domain Beta-Casp PF10996.8 gi|433590934|ref|YP_007280430.1| - 5.9e-22 78.0 0.0 1.2e-21 77.1 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|433590934|ref|YP_007280430.1| - 2.8e-17 62.4 0.0 9.6e-17 60.7 0.0 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|433590934|ref|YP_007280430.1| - 4.1e-14 53.1 2.7 4.1e-14 53.1 2.7 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|433590934|ref|YP_007280430.1| - 9.5e-13 48.0 0.0 1.6e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|433590934|ref|YP_007280430.1| - 4.8e-11 42.5 0.1 8.6e-11 41.7 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|433590934|ref|YP_007280430.1| - 4.5e-07 29.6 0.0 4.2e-06 26.5 0.0 2.3 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|433590934|ref|YP_007280430.1| - 0.00013 21.9 0.2 0.00028 20.8 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|433590934|ref|YP_007280430.1| - 0.023 14.6 0.1 0.054 13.4 0.1 1.6 1 0 0 1 1 1 0 KH domain KH_1 PF00013.29 gi|433590934|ref|YP_007280430.1| - 0.069 13.0 0.0 0.23 11.3 0.0 1.9 1 0 0 1 1 1 0 KH domain HisKA_7TM PF16927.5 gi|433590935|ref|YP_007280431.1| - 5.2e-37 128.0 20.5 6.5e-37 127.7 20.5 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|433590935|ref|YP_007280431.1| - 2.5e-17 63.4 0.0 4.9e-17 62.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|433590935|ref|YP_007280431.1| - 3e-09 37.1 0.1 6.3e-09 36.1 0.1 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|433590935|ref|YP_007280431.1| - 1.6e-06 28.1 0.2 5.2e-05 23.2 0.2 2.4 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|433590935|ref|YP_007280431.1| - 4.3e-06 26.7 0.1 8e-06 25.8 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|433590935|ref|YP_007280431.1| - 1.2e-05 25.1 0.0 2.5e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 gi|433590935|ref|YP_007280431.1| - 0.00013 21.9 0.0 0.0004 20.3 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|433590935|ref|YP_007280431.1| - 0.00068 19.9 0.0 0.0044 17.2 0.0 2.4 2 1 0 2 2 2 1 PAS domain HisKA PF00512.25 gi|433590935|ref|YP_007280431.1| - 0.0015 18.5 0.1 0.0029 17.6 0.1 1.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|433590935|ref|YP_007280431.1| - 0.0047 16.5 0.1 0.014 15.0 0.1 1.8 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase dCache_3 PF14827.6 gi|433590935|ref|YP_007280431.1| - 0.089 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Double sensory domain of two-component sensor kinase HATPase_c_3 PF13589.6 gi|433590935|ref|YP_007280431.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Nitroreductase PF00881.24 gi|433590936|ref|YP_007280432.1| - 2.4e-33 115.6 0.0 3e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|433590936|ref|YP_007280432.1| - 7.2e-07 29.0 0.0 0.41 10.2 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase HhH-GPD PF00730.25 gi|433590937|ref|YP_007280433.1| - 2.7e-17 63.2 0.0 3.8e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|433590937|ref|YP_007280433.1| - 5.9e-05 22.7 0.0 0.00014 21.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|433590937|ref|YP_007280433.1| - 0.0021 18.4 9.4 0.0044 17.3 9.4 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|433590937|ref|YP_007280433.1| - 0.018 15.7 0.3 0.39 11.4 0.0 2.3 1 1 1 2 2 2 0 Helix-hairpin-helix domain DUF371 PF04027.13 gi|433590938|ref|YP_007280434.1| - 5.4e-53 178.5 0.3 6e-53 178.4 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Phosphodiest PF01663.22 gi|433590940|ref|YP_007280436.1| - 6.6e-62 210.2 0.2 7.6e-62 210.0 0.2 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2990 PF11693.8 gi|433590940|ref|YP_007280436.1| - 0.076 13.2 0.1 0.19 11.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2990) Sulfatase PF00884.23 gi|433590940|ref|YP_007280436.1| - 0.11 11.9 3.1 0.26 10.6 0.5 2.3 2 0 0 2 2 2 0 Sulfatase Pyrophosphatase PF00719.19 gi|433590942|ref|YP_007280438.1| - 3e-51 173.4 1.8 3.4e-51 173.2 1.8 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase PadR PF03551.14 gi|433590943|ref|YP_007280439.1| - 3.7e-17 62.0 0.4 5.4e-17 61.5 0.4 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|433590943|ref|YP_007280439.1| - 7.4e-05 23.2 0.0 0.00066 20.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain RTP PF02334.16 gi|433590943|ref|YP_007280439.1| - 0.00048 20.7 0.0 0.00062 20.4 0.0 1.2 1 0 0 1 1 1 1 Replication terminator protein DUF1495 PF07381.11 gi|433590943|ref|YP_007280439.1| - 0.0059 16.4 0.0 0.0081 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|433590943|ref|YP_007280439.1| - 0.043 13.8 0.1 0.069 13.1 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix RVT_3 PF13456.6 gi|433590945|ref|YP_007280441.1| - 4.9e-24 84.5 0.0 6.7e-24 84.1 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|433590945|ref|YP_007280441.1| - 2.7e-09 37.3 0.0 4.7e-09 36.6 0.0 1.5 1 1 0 1 1 1 1 RNase H TFIIB PF00382.19 gi|433590946|ref|YP_007280442.1| - 9.6e-47 156.9 2.9 8.4e-26 89.8 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433590946|ref|YP_007280442.1| - 1.5e-19 69.2 3.0 3e-19 68.2 3.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|433590946|ref|YP_007280442.1| - 0.0036 17.0 0.5 0.0082 15.8 0.5 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain HARE-HTH PF05066.13 gi|433590946|ref|YP_007280442.1| - 0.011 16.1 0.1 0.52 10.7 0.1 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain PhnA_Zn_Ribbon PF08274.12 gi|433590946|ref|YP_007280442.1| - 0.039 13.9 2.1 0.084 12.8 2.1 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Cyclin_C PF02984.19 gi|433590946|ref|YP_007280442.1| - 0.058 13.5 0.0 0.56 10.3 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|433590946|ref|YP_007280442.1| - 0.076 12.6 2.9 0.37 10.3 0.1 3.4 3 1 1 4 4 4 0 Sigma-70, region 4 RB_B PF01857.20 gi|433590946|ref|YP_007280442.1| - 0.076 13.0 0.0 1.7 8.6 0.0 2.4 2 0 0 2 2 2 0 Retinoblastoma-associated protein B domain Zn_Tnp_IS1595 PF12760.7 gi|433590946|ref|YP_007280442.1| - 0.08 12.9 0.1 0.19 11.8 0.1 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|433590946|ref|YP_007280442.1| - 0.092 13.1 1.3 0.17 12.3 0.4 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar HTH_23 PF13384.6 gi|433590946|ref|YP_007280442.1| - 0.096 12.5 0.8 0.7 9.8 0.1 2.8 3 0 0 3 3 3 0 Homeodomain-like domain RPA_interact_C PF14768.6 gi|433590946|ref|YP_007280442.1| - 0.12 13.0 0.0 0.28 11.8 0.0 1.8 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DUF2318 PF10080.9 gi|433590946|ref|YP_007280442.1| - 0.12 12.5 0.1 0.26 11.4 0.1 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Zn-ribbon_8 PF09723.10 gi|433590946|ref|YP_007280442.1| - 0.14 12.3 1.8 6.8 6.9 0.2 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Pribosyltran PF00156.27 gi|433590947|ref|YP_007280443.1| - 2.8e-15 56.2 0.0 5e-15 55.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|433590947|ref|YP_007280443.1| - 0.00049 19.8 0.0 0.0012 18.6 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|433590947|ref|YP_007280443.1| - 0.0083 16.2 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|433590947|ref|YP_007280443.1| - 0.012 15.5 0.2 0.089 12.8 0.1 2.2 2 0 0 2 2 2 0 HTH domain GerE PF00196.19 gi|433590947|ref|YP_007280443.1| - 0.025 14.1 0.0 0.055 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|433590947|ref|YP_007280443.1| - 0.03 14.1 0.1 0.36 10.6 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|433590947|ref|YP_007280443.1| - 0.035 14.4 0.1 0.083 13.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|433590947|ref|YP_007280443.1| - 0.044 13.3 0.0 0.087 12.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|433590947|ref|YP_007280443.1| - 0.058 13.0 0.0 0.16 11.6 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433590947|ref|YP_007280443.1| - 0.095 12.6 0.0 0.27 11.1 0.0 1.8 1 0 0 1 1 1 0 MarR family PRTase_2 PF15609.6 gi|433590947|ref|YP_007280443.1| - 0.095 12.2 0.1 0.2 11.2 0.0 1.5 2 0 0 2 2 2 0 Phosphoribosyl transferase UPRTase PF14681.6 gi|433590947|ref|YP_007280443.1| - 0.15 11.5 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_Crp_2 PF13545.6 gi|433590947|ref|YP_007280443.1| - 0.15 12.0 0.0 0.49 10.4 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Glu_dehyd_C PF16912.5 gi|433590948|ref|YP_007280444.1| - 9.7e-102 338.9 0.0 1.2e-101 338.6 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|433590948|ref|YP_007280444.1| - 2e-11 43.7 0.0 3.3e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|433590948|ref|YP_007280444.1| - 3.7e-08 33.4 0.0 6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|433590948|ref|YP_007280444.1| - 0.009 15.9 0.2 0.018 14.9 0.2 1.4 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N_2 PF13602.6 gi|433590948|ref|YP_007280444.1| - 0.029 15.4 0.0 0.048 14.7 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|433590948|ref|YP_007280444.1| - 0.047 13.8 0.0 0.073 13.1 0.0 1.2 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Hydrolase_3 PF08282.12 gi|433590949|ref|YP_007280445.1| - 2.4e-09 37.3 0.0 0.00029 20.7 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433590949|ref|YP_007280445.1| - 0.013 15.8 0.1 0.029 14.7 0.1 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase HTH_10 PF04967.12 gi|433590950|ref|YP_007280446.1| - 8.4e-19 67.1 0.1 1.4e-18 66.4 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|433590950|ref|YP_007280446.1| - 4.3e-09 36.4 8.9 6.7e-09 35.8 8.9 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|433590950|ref|YP_007280446.1| - 0.0025 17.3 0.4 0.0056 16.2 0.4 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 UPF0122 PF04297.14 gi|433590950|ref|YP_007280446.1| - 0.0028 17.8 0.0 0.0057 16.9 0.0 1.4 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r3 PF04539.16 gi|433590950|ref|YP_007280446.1| - 0.0049 16.9 1.7 0.037 14.1 0.4 2.4 2 0 0 2 2 2 1 Sigma-70 region 3 MarR_2 PF12802.7 gi|433590950|ref|YP_007280446.1| - 0.015 15.2 0.3 0.067 13.1 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|433590950|ref|YP_007280446.1| - 0.02 14.4 0.1 0.051 13.1 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433590950|ref|YP_007280446.1| - 0.06 13.4 0.1 0.18 11.9 0.1 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_30 PF13556.6 gi|433590950|ref|YP_007280446.1| - 0.1 12.4 0.1 0.27 11.1 0.0 1.7 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_psq PF05225.16 gi|433590950|ref|YP_007280446.1| - 0.13 12.1 1.2 0.88 9.4 0.0 2.7 2 1 0 2 2 2 0 helix-turn-helix, Psq domain DHDPS PF00701.22 gi|433590951|ref|YP_007280447.1| - 1.2e-70 237.5 0.0 1.3e-70 237.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PEP_mutase PF13714.6 gi|433590951|ref|YP_007280447.1| - 0.042 13.3 0.1 0.44 10.0 0.0 2.1 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase ThiG PF05690.14 gi|433590951|ref|YP_007280447.1| - 0.12 11.6 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG DUF3021 PF11457.8 gi|433590953|ref|YP_007280449.1| - 0.068 13.5 1.0 0.093 13.1 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) HAD_2 PF13419.6 gi|433590954|ref|YP_007280450.1| - 2.3e-17 63.6 0.0 2.5e-16 60.3 0.0 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433590954|ref|YP_007280450.1| - 6.3e-10 39.7 0.6 6.7e-07 29.8 0.0 2.2 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433590954|ref|YP_007280450.1| - 2.5e-06 27.4 0.0 6.6e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|433590954|ref|YP_007280450.1| - 0.0011 19.4 5.0 0.0055 17.1 5.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF4233 PF14017.6 gi|433590955|ref|YP_007280451.1| - 0.039 14.3 2.8 0.059 13.7 1.6 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF4233) SPC12 PF06645.13 gi|433590955|ref|YP_007280451.1| - 2.5 8.2 5.7 1 9.5 3.2 1.5 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Pantoate_transf PF02548.15 gi|433590956|ref|YP_007280452.1| - 1.5e-105 352.3 0.2 1.8e-105 352.0 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|433590956|ref|YP_007280452.1| - 0.00018 21.0 1.8 0.00036 20.0 1.6 1.6 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Abhydrolase_6 PF12697.7 gi|433590958|ref|YP_007280454.1| - 5.7e-20 72.9 11.7 7e-20 72.6 11.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|433590958|ref|YP_007280454.1| - 4e-17 62.7 0.8 8.1e-10 38.8 0.6 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|433590958|ref|YP_007280454.1| - 3.1e-14 52.8 0.2 4.1e-14 52.4 0.2 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|433590958|ref|YP_007280454.1| - 0.00093 19.3 0.0 0.0027 17.8 0.0 1.7 1 1 0 1 1 1 1 TAP-like protein AAA PF00004.29 gi|433590960|ref|YP_007280456.1| - 2.6e-100 332.1 0.0 2.9e-49 166.9 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|433590960|ref|YP_007280456.1| - 1.2e-25 89.0 2.5 2.2e-13 49.8 0.2 2.8 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|433590960|ref|YP_007280456.1| - 6.7e-24 83.9 0.1 7.7e-23 80.5 0.1 2.7 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|433590960|ref|YP_007280456.1| - 1.3e-16 61.2 0.1 7.2e-08 32.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|433590960|ref|YP_007280456.1| - 6.7e-16 57.8 0.2 2e-15 56.3 0.2 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|433590960|ref|YP_007280456.1| - 6.8e-16 58.4 0.0 1.2e-07 31.6 0.0 2.7 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|433590960|ref|YP_007280456.1| - 3.9e-13 50.1 0.3 1.5e-05 25.5 0.1 3.6 2 2 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|433590960|ref|YP_007280456.1| - 1.1e-10 41.8 0.0 0.00019 21.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|433590960|ref|YP_007280456.1| - 1.8e-10 41.0 1.3 0.00073 19.5 0.1 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|433590960|ref|YP_007280456.1| - 1.9e-10 41.2 0.8 0.0014 19.0 0.0 3.8 3 2 2 5 5 4 2 AAA domain TIP49 PF06068.13 gi|433590960|ref|YP_007280456.1| - 3.7e-10 39.5 0.0 0.00028 20.2 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|433590960|ref|YP_007280456.1| - 4.6e-09 36.4 0.0 0.0012 18.9 0.0 2.7 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.22 gi|433590960|ref|YP_007280456.1| - 2.4e-08 34.3 0.0 0.0049 17.2 0.0 2.7 2 1 0 2 2 2 2 RNA helicase IstB_IS21 PF01695.17 gi|433590960|ref|YP_007280456.1| - 1.1e-07 31.7 0.0 0.005 16.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein DUF815 PF05673.13 gi|433590960|ref|YP_007280456.1| - 2e-07 30.4 0.0 0.0012 18.1 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|433590960|ref|YP_007280456.1| - 2.1e-07 30.6 0.0 0.027 14.0 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|433590960|ref|YP_007280456.1| - 4.2e-07 29.6 0.3 0.013 14.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|433590960|ref|YP_007280456.1| - 7.6e-07 28.9 0.9 0.29 10.7 0.1 4.0 4 0 0 4 4 4 1 AAA domain AAA_3 PF07726.11 gi|433590960|ref|YP_007280456.1| - 1.2e-06 28.4 0.0 0.016 15.0 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|433590960|ref|YP_007280456.1| - 1.9e-06 28.2 0.0 0.034 14.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|433590960|ref|YP_007280456.1| - 3.6e-06 27.0 0.0 0.11 12.5 0.0 2.3 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|433590960|ref|YP_007280456.1| - 3.7e-06 27.5 0.0 0.092 13.3 0.0 2.7 2 0 0 2 2 2 2 ABC transporter Sigma54_activat PF00158.26 gi|433590960|ref|YP_007280456.1| - 4e-06 26.6 0.0 0.18 11.5 0.0 3.5 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_18 PF13238.6 gi|433590960|ref|YP_007280456.1| - 8e-06 26.4 0.1 0.2 12.2 0.0 2.9 3 0 0 3 3 2 2 AAA domain NACHT PF05729.12 gi|433590960|ref|YP_007280456.1| - 1.2e-05 25.3 0.2 0.89 9.5 0.0 4.0 3 1 1 4 4 4 2 NACHT domain AAA_11 PF13086.6 gi|433590960|ref|YP_007280456.1| - 1.4e-05 25.1 0.0 0.13 12.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|433590960|ref|YP_007280456.1| - 1.5e-05 24.5 0.2 0.23 10.8 0.0 3.4 2 1 1 3 3 3 2 KaiC PhoH PF02562.16 gi|433590960|ref|YP_007280456.1| - 1.9e-05 24.2 0.0 0.073 12.5 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_24 PF13479.6 gi|433590960|ref|YP_007280456.1| - 2.1e-05 24.3 0.1 0.15 11.8 0.1 2.9 2 1 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|433590960|ref|YP_007280456.1| - 2.2e-05 23.8 0.0 0.21 10.7 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.6 gi|433590960|ref|YP_007280456.1| - 3.6e-05 23.6 0.0 0.13 12.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|433590960|ref|YP_007280456.1| - 6.3e-05 22.3 0.1 0.21 10.9 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin DUF2075 PF09848.9 gi|433590960|ref|YP_007280456.1| - 8e-05 22.0 0.0 0.26 10.5 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.18 gi|433590960|ref|YP_007280456.1| - 0.00021 21.2 0.0 0.23 11.3 0.0 2.8 3 1 0 3 3 2 1 Bacterial dnaA protein ATPase_2 PF01637.18 gi|433590960|ref|YP_007280456.1| - 0.0003 20.8 0.0 1.6 8.6 0.0 3.5 2 2 2 4 4 4 1 ATPase domain predominantly from Archaea Parvo_NS1 PF01057.17 gi|433590960|ref|YP_007280456.1| - 0.00043 19.5 0.1 0.62 9.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Vps4_C PF09336.10 gi|433590960|ref|YP_007280456.1| - 0.00055 19.9 0.2 0.32 11.0 0.0 2.8 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_17 PF13207.6 gi|433590960|ref|YP_007280456.1| - 0.0008 19.8 0.0 2.7 8.4 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|433590960|ref|YP_007280456.1| - 0.001 19.4 0.2 2.7 8.3 0.1 2.7 2 1 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|433590960|ref|YP_007280456.1| - 0.0016 18.6 0.0 3.3 7.8 0.0 3.0 3 0 0 3 3 3 1 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|433590960|ref|YP_007280456.1| - 0.0016 18.4 0.2 1.9 8.4 0.0 3.2 2 2 0 2 2 2 1 NTPase Rad17 PF03215.15 gi|433590960|ref|YP_007280456.1| - 0.0054 16.7 0.0 4.5 7.2 0.0 3.0 3 0 0 3 3 3 0 Rad17 P-loop domain T2SSE PF00437.20 gi|433590960|ref|YP_007280456.1| - 0.008 15.3 0.0 1.5 7.8 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein ResIII PF04851.15 gi|433590960|ref|YP_007280456.1| - 0.011 15.8 0.0 3.3 7.7 0.0 2.8 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|433590960|ref|YP_007280456.1| - 0.015 14.2 0.0 3.5 6.4 0.0 2.6 2 0 0 2 2 2 0 AFG1-like ATPase HJURP_C PF12347.8 gi|433590960|ref|YP_007280456.1| - 0.028 14.4 0.3 0.068 13.2 0.3 1.6 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat Zot PF05707.12 gi|433590960|ref|YP_007280456.1| - 0.029 14.0 0.0 1.4 8.5 0.0 2.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Cytidylate_kin PF02224.18 gi|433590960|ref|YP_007280456.1| - 0.029 14.1 0.1 10 5.8 0.0 2.8 3 0 0 3 3 2 0 Cytidylate kinase TniB PF05621.11 gi|433590960|ref|YP_007280456.1| - 0.065 12.6 0.0 22 4.4 0.0 3.3 2 2 2 4 4 4 0 Bacterial TniB protein Torsin PF06309.11 gi|433590960|ref|YP_007280456.1| - 0.11 12.6 0.0 5.9 7.0 0.0 2.4 2 0 0 2 2 2 0 Torsin PIF1 PF05970.14 gi|433590960|ref|YP_007280456.1| - 0.15 11.2 0.0 11 5.1 0.0 2.6 3 0 0 3 3 3 0 PIF1-like helicase AAA_29 PF13555.6 gi|433590960|ref|YP_007280456.1| - 0.15 11.8 0.0 28 4.5 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.18 gi|433590960|ref|YP_007280456.1| - 0.15 11.7 0.0 16 5.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.14 gi|433590960|ref|YP_007280456.1| - 0.22 10.7 0.1 7.8 5.6 0.0 2.8 2 2 1 3 3 3 0 KAP family P-loop domain MFS_1 PF07690.16 gi|433590961|ref|YP_007280457.1| - 8.9e-30 103.8 52.4 2.1e-28 99.2 45.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily AhpC-TSA PF00578.21 gi|433590962|ref|YP_007280458.1| - 1.4e-31 109.0 0.0 1.7e-31 108.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|433590962|ref|YP_007280458.1| - 2.4e-15 56.5 0.0 2.9e-15 56.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|433590962|ref|YP_007280458.1| - 3.2e-07 30.3 0.0 4.1e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC DUF899 PF05988.12 gi|433590962|ref|YP_007280458.1| - 2.4e-05 24.0 0.0 3.1e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) SIL1 PF16782.5 gi|433590962|ref|YP_007280458.1| - 0.042 13.1 0.0 0.049 12.8 0.0 1.1 1 0 0 1 1 1 0 Nucleotide exchange factor SIL1 AhpC-TSA_2 PF13911.6 gi|433590962|ref|YP_007280458.1| - 0.08 13.1 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Sld5 PF05916.11 gi|433590963|ref|YP_007280459.1| - 0.00019 21.8 0.1 0.00029 21.3 0.1 1.2 1 0 0 1 1 1 1 GINS complex protein Metal_resist PF13801.6 gi|433590963|ref|YP_007280459.1| - 0.054 13.7 0.3 0.18 12.0 0.2 1.9 1 1 0 1 1 1 0 Heavy-metal resistance DNA_primase_S PF01896.19 gi|433590964|ref|YP_007280460.1| - 4.3e-22 79.0 0.0 1.7e-21 77.1 0.0 1.9 1 1 0 1 1 1 1 DNA primase small subunit FmdE PF02663.14 gi|433590965|ref|YP_007280461.1| - 5.3e-06 26.5 0.0 1.4e-05 25.1 0.0 1.6 1 1 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon E1-E2_ATPase PF00122.20 gi|433590966|ref|YP_007280462.1| - 6.9e-48 162.6 2.0 6.9e-48 162.6 2.0 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433590966|ref|YP_007280462.1| - 1.2e-37 130.2 7.8 1.2e-37 130.2 7.8 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433590966|ref|YP_007280462.1| - 0.00077 19.9 0.3 0.0035 17.8 0.3 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|433590966|ref|YP_007280462.1| - 0.00099 18.9 1.2 0.043 13.6 0.9 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|433590966|ref|YP_007280462.1| - 0.0095 16.0 0.1 0.073 13.2 0.0 2.6 3 1 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Mannitol_dh PF01232.23 gi|433590966|ref|YP_007280462.1| - 0.14 12.3 0.3 0.39 10.9 0.1 1.8 2 0 0 2 2 2 0 Mannitol dehydrogenase Rossmann domain HMA PF00403.26 gi|433590967|ref|YP_007280463.1| - 7.4e-11 42.3 0.1 8.2e-11 42.2 0.1 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Tox-PL-2 PF15643.6 gi|433590967|ref|YP_007280463.1| - 0.0076 16.4 0.0 0.0083 16.2 0.0 1.1 1 0 0 1 1 1 1 Papain fold toxin 2 HTH_20 PF12840.7 gi|433590968|ref|YP_007280464.1| - 8.9e-15 54.5 1.1 2.1e-14 53.3 1.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433590968|ref|YP_007280464.1| - 2.1e-06 27.5 0.2 1.4e-05 24.9 0.2 2.1 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|433590968|ref|YP_007280464.1| - 0.00015 21.7 1.1 0.00022 21.1 0.2 1.8 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain PadR PF03551.14 gi|433590968|ref|YP_007280464.1| - 0.0044 17.0 0.2 0.012 15.5 0.1 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family PqqD PF05402.12 gi|433590968|ref|YP_007280464.1| - 0.0073 16.6 0.2 1.9 8.8 0.0 2.5 2 0 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) Type2_restr_D3 PF16902.5 gi|433590968|ref|YP_007280464.1| - 0.014 15.3 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain TFIIE_alpha PF02002.17 gi|433590968|ref|YP_007280464.1| - 0.031 14.1 0.0 0.051 13.4 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_IclR PF09339.10 gi|433590968|ref|YP_007280464.1| - 0.039 13.8 0.5 0.18 11.6 0.5 2.0 1 1 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433590968|ref|YP_007280464.1| - 0.051 13.5 0.8 0.37 10.7 0.8 2.4 1 1 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|433590968|ref|YP_007280464.1| - 0.073 12.6 0.0 0.21 11.2 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Trans_reg_C PF00486.28 gi|433590968|ref|YP_007280464.1| - 0.085 13.0 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal Acyl-CoA_dh_N PF02771.16 gi|433590968|ref|YP_007280464.1| - 0.1 13.2 1.2 0.29 11.8 0.2 1.9 1 1 1 2 2 2 0 Acyl-CoA dehydrogenase, N-terminal domain Myb_DNA-bind_4 PF13837.6 gi|433590968|ref|YP_007280464.1| - 0.19 12.1 0.0 0.43 11.0 0.0 1.6 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain Acetyltransf_10 PF13673.7 gi|433590969|ref|YP_007280465.1| - 3.7e-14 52.8 0.1 4.5e-14 52.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|433590969|ref|YP_007280465.1| - 1.1e-13 51.4 0.0 1.8e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|433590969|ref|YP_007280465.1| - 8.1e-13 48.6 0.1 1.2e-12 48.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|433590969|ref|YP_007280465.1| - 1e-08 35.0 0.0 1.7e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|433590969|ref|YP_007280465.1| - 0.00073 19.7 0.0 0.0015 18.6 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|433590969|ref|YP_007280465.1| - 0.011 15.8 0.1 0.054 13.6 0.1 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_18 PF18014.1 gi|433590969|ref|YP_007280465.1| - 0.05 13.4 0.0 0.079 12.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NTS_2 PF15448.6 gi|433590969|ref|YP_007280465.1| - 0.64 10.5 3.3 1.8 9.0 3.3 1.8 1 0 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein Archease PF01951.16 gi|433590970|ref|YP_007280466.1| - 7.5e-36 123.4 0.2 8.4e-36 123.2 0.2 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.17 gi|433590971|ref|YP_007280467.1| - 3.9e-155 517.1 0.0 4.4e-155 516.9 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Intein_splicing PF14890.6 gi|433590971|ref|YP_007280467.1| - 1.2e-13 51.1 0.0 2.1e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Intein splicing domain Hint PF01079.20 gi|433590971|ref|YP_007280467.1| - 0.011 15.3 0.0 0.021 14.3 0.0 1.5 1 0 0 1 1 1 0 Hint module Mus7 PF09462.10 gi|433590971|ref|YP_007280467.1| - 0.19 10.6 0.2 0.28 10.0 0.2 1.1 1 0 0 1 1 1 0 Mus7/MMS22 family Radical_SAM PF04055.21 gi|433590973|ref|YP_007280469.1| - 1.9e-24 86.9 0.0 3.6e-24 86.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|433590973|ref|YP_007280469.1| - 8.5e-17 61.3 0.0 1.5e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|433590973|ref|YP_007280469.1| - 6e-07 29.8 0.0 1.3e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|433590973|ref|YP_007280469.1| - 4.2e-06 26.9 0.0 9.9e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrom_C PF00034.21 gi|433590973|ref|YP_007280469.1| - 0.13 13.5 0.2 8.5 7.6 0.0 2.7 3 1 0 3 3 3 0 Cytochrome c Ribosomal_S13 PF00416.22 gi|433590974|ref|YP_007280470.1| - 1e-44 152.0 4.0 1.3e-44 151.7 4.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_5 PF14520.6 gi|433590974|ref|YP_007280470.1| - 0.063 13.9 0.0 0.13 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain S4 PF01479.25 gi|433590975|ref|YP_007280471.1| - 9.2e-14 50.9 2.4 1.1e-13 50.6 0.2 2.0 2 0 0 2 2 2 1 S4 domain Ribosomal_S11 PF00411.19 gi|433590976|ref|YP_007280472.1| - 3.8e-47 159.2 2.5 4.9e-47 158.9 2.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|433590976|ref|YP_007280472.1| - 0.016 15.6 0.1 0.022 15.1 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RNA_pol_A_bac PF01000.26 gi|433590977|ref|YP_007280473.1| - 1.1e-20 74.0 0.0 3.5e-20 72.5 0.0 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|433590977|ref|YP_007280473.1| - 3.3e-16 58.5 0.0 4.5e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L27A PF00828.19 gi|433590978|ref|YP_007280474.1| - 2.8e-06 28.0 0.2 9.7e-06 26.3 0.2 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|433590978|ref|YP_007280474.1| - 5.5e-06 25.9 0.0 6.3e-06 25.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L13 PF00572.18 gi|433590979|ref|YP_007280475.1| - 1.1e-10 41.8 0.1 3e-08 34.0 0.1 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|433590980|ref|YP_007280476.1| - 9.4e-33 113.3 0.0 1.1e-32 113.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|433590981|ref|YP_007280477.1| - 2.6e-28 98.1 0.1 2.9e-28 97.9 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.22 gi|433590982|ref|YP_007280478.1| - 1.3e-11 44.2 0.0 1.5e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.22 gi|433590983|ref|YP_007280479.1| - 1.1e-75 254.7 0.3 1.4e-75 254.3 0.3 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|433590983|ref|YP_007280479.1| - 2.4e-34 118.3 0.1 7.7e-34 116.7 0.1 1.9 1 1 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|433590983|ref|YP_007280479.1| - 5.3e-12 45.8 0.1 1.4e-11 44.4 0.1 1.7 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|433590983|ref|YP_007280479.1| - 8.5e-05 21.8 0.1 0.00018 20.8 0.1 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus DUF903 PF06004.12 gi|433590983|ref|YP_007280479.1| - 0.28 11.1 2.6 1.7 8.6 0.1 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF903) Ribosomal_S2 PF00318.20 gi|433590984|ref|YP_007280480.1| - 1.5e-23 83.2 0.2 7.8e-14 51.4 0.7 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 HTH_20 PF12840.7 gi|433590985|ref|YP_007280481.1| - 0.24 11.5 2.4 0.25 11.4 1.0 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain ThiP_synth PF10120.9 gi|433590986|ref|YP_007280482.1| - 8.8e-49 165.3 0.4 1.3e-48 164.8 0.4 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|433590986|ref|YP_007280482.1| - 9.7e-07 28.8 0.1 1.9e-06 27.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|433590986|ref|YP_007280482.1| - 5e-06 26.2 0.0 2.2e-05 24.1 0.0 2.1 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|433590986|ref|YP_007280482.1| - 9.6e-06 25.4 0.7 0.00019 21.2 0.2 2.7 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.6 gi|433590986|ref|YP_007280482.1| - 0.00042 20.6 0.6 0.00042 20.6 0.6 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|433590986|ref|YP_007280482.1| - 0.00047 19.6 0.0 0.0016 17.9 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|433590986|ref|YP_007280482.1| - 0.0005 19.6 0.0 0.001 18.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 gi|433590986|ref|YP_007280482.1| - 0.0014 18.6 0.0 0.0032 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|433590986|ref|YP_007280482.1| - 0.0034 17.1 0.1 0.014 15.1 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain RepB PF07506.11 gi|433590986|ref|YP_007280482.1| - 0.0037 17.4 0.0 0.0086 16.2 0.0 1.6 1 0 0 1 1 1 1 RepB plasmid partitioning protein HTH_28 PF13518.6 gi|433590986|ref|YP_007280482.1| - 0.0051 16.9 0.1 0.035 14.2 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|433590986|ref|YP_007280482.1| - 0.018 14.9 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 gi|433590986|ref|YP_007280482.1| - 0.02 14.9 0.0 0.041 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|433590986|ref|YP_007280482.1| - 0.033 13.9 0.0 0.082 12.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|433590986|ref|YP_007280482.1| - 0.055 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 HTH domain TetR_N PF00440.23 gi|433590986|ref|YP_007280482.1| - 0.098 12.5 0.2 0.44 10.4 0.2 2.1 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_5 PF01022.20 gi|433590986|ref|YP_007280482.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_26 PF13443.6 gi|433590986|ref|YP_007280482.1| - 0.11 12.9 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain BPD_transp_1 PF00528.22 gi|433590987|ref|YP_007280483.1| - 1.2e-08 34.9 8.0 1.2e-08 34.9 8.0 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3619 PF12279.8 gi|433590987|ref|YP_007280483.1| - 0.028 14.8 2.3 0.21 11.9 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3619) SafA PF17073.5 gi|433590987|ref|YP_007280483.1| - 0.1 12.5 0.9 0.2 11.6 0.1 1.8 2 0 0 2 2 2 0 Two-component-system connector protein ABC_tran PF00005.27 gi|433590988|ref|YP_007280484.1| - 3.9e-28 98.7 0.0 5.2e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433590988|ref|YP_007280484.1| - 3.8e-07 30.2 0.0 2e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|433590988|ref|YP_007280484.1| - 3.9e-05 23.6 0.0 0.00053 19.9 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|433590988|ref|YP_007280484.1| - 0.00018 21.9 1.7 0.00035 21.0 1.7 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|433590988|ref|YP_007280484.1| - 0.00024 20.8 0.0 0.00044 19.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|433590988|ref|YP_007280484.1| - 0.00091 19.8 0.0 0.0012 19.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|433590988|ref|YP_007280484.1| - 0.0054 16.5 0.1 0.013 15.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|433590988|ref|YP_007280484.1| - 0.0055 17.0 0.1 0.022 15.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|433590988|ref|YP_007280484.1| - 0.018 14.8 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|433590988|ref|YP_007280484.1| - 0.032 13.8 1.0 0.092 12.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|433590988|ref|YP_007280484.1| - 0.1 12.4 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|433590988|ref|YP_007280484.1| - 0.16 12.1 0.0 0.8 9.8 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|433590988|ref|YP_007280484.1| - 0.2 11.6 0.3 0.44 10.4 0.2 1.6 2 0 0 2 2 2 0 NACHT domain Phosphonate-bd PF12974.7 gi|433590989|ref|YP_007280485.1| - 4.6e-49 167.2 0.1 5.9e-49 166.8 0.1 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|433590989|ref|YP_007280485.1| - 0.0002 21.4 0.0 0.00039 20.4 0.0 1.5 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|433590989|ref|YP_007280485.1| - 0.004 16.6 0.0 0.0065 15.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 TAT_signal PF10518.9 gi|433590989|ref|YP_007280485.1| - 0.054 13.4 1.4 0.091 12.6 1.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GHMP_kinases_N PF00288.26 gi|433590990|ref|YP_007280486.1| - 1.6e-14 53.9 0.4 3.8e-14 52.7 0.4 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|433590990|ref|YP_007280486.1| - 1.6e-14 54.0 0.9 1.2e-13 51.2 0.3 2.2 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|433590990|ref|YP_007280486.1| - 0.00014 21.3 0.0 0.00072 19.1 0.0 2.2 2 0 0 2 2 2 1 Galactokinase galactose-binding signature AA_kinase PF00696.28 gi|433590991|ref|YP_007280487.1| - 1.4e-38 132.8 4.5 1.7e-38 132.6 4.5 1.0 1 0 0 1 1 1 1 Amino acid kinase family RuBisCO_large PF00016.20 gi|433590991|ref|YP_007280487.1| - 0.11 11.6 2.1 0.18 10.9 2.1 1.3 1 0 0 1 1 1 0 Ribulose bisphosphate carboxylase large chain, catalytic domain TrkH PF02386.16 gi|433590992|ref|YP_007280488.1| - 2e-66 224.4 11.0 2.2e-65 221.0 11.0 1.9 1 1 0 1 1 1 1 Cation transport protein DUF373 PF04123.13 gi|433590993|ref|YP_007280489.1| - 0.002 17.7 0.0 0.0022 17.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF3262 PF11660.8 gi|433590993|ref|YP_007280489.1| - 0.056 13.8 1.3 0.056 13.8 1.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3262) DUF4407 PF14362.6 gi|433590993|ref|YP_007280489.1| - 0.14 11.5 0.6 0.15 11.4 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HemY_N PF07219.13 gi|433590993|ref|YP_007280489.1| - 6.1 7.1 8.3 0.41 10.8 0.5 2.0 1 1 1 2 2 2 0 HemY protein N-terminus TrkA_N PF02254.18 gi|433590994|ref|YP_007280490.1| - 8.8e-29 100.1 0.8 1.7e-28 99.2 0.8 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|433590994|ref|YP_007280490.1| - 1.5e-15 56.8 0.5 1.3e-14 53.8 0.1 2.3 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|433590994|ref|YP_007280490.1| - 2e-06 28.3 0.2 2.3e-05 24.9 0.0 2.5 1 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|433590994|ref|YP_007280490.1| - 3.4e-06 27.4 0.2 6.6e-06 26.4 0.2 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain XdhC_C PF13478.6 gi|433590994|ref|YP_007280490.1| - 1.2e-05 25.8 0.1 2.2e-05 24.9 0.1 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_binding_7 PF13241.6 gi|433590994|ref|YP_007280490.1| - 0.00011 22.6 0.3 0.00024 21.5 0.1 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|433590994|ref|YP_007280490.1| - 0.00028 21.4 0.1 0.013 16.0 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.6 gi|433590994|ref|YP_007280490.1| - 0.0013 18.7 0.3 0.0036 17.2 0.1 1.8 1 1 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|433590994|ref|YP_007280490.1| - 0.0032 17.4 0.0 0.0046 16.8 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|433590994|ref|YP_007280490.1| - 0.0088 15.6 0.3 0.025 14.1 0.1 1.8 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PglD_N PF17836.1 gi|433590994|ref|YP_007280490.1| - 0.014 16.0 0.2 0.04 14.5 0.2 1.8 1 1 0 1 1 1 0 PglD N-terminal domain GFO_IDH_MocA PF01408.22 gi|433590994|ref|YP_007280490.1| - 0.016 16.0 0.2 0.038 14.8 0.2 1.8 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Peripla_BP_3 PF13377.6 gi|433590994|ref|YP_007280490.1| - 0.019 15.3 0.2 0.03 14.7 0.2 1.3 1 0 0 1 1 1 0 Periplasmic binding protein-like domain AlaDh_PNT_C PF01262.21 gi|433590994|ref|YP_007280490.1| - 0.029 13.7 0.1 0.052 12.8 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.13 gi|433590994|ref|YP_007280490.1| - 0.036 13.6 0.1 0.095 12.2 0.0 1.7 1 1 1 2 2 2 0 NmrA-like family NAD_binding_2 PF03446.15 gi|433590994|ref|YP_007280490.1| - 0.042 14.0 0.0 0.13 12.4 0.0 1.8 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|433590994|ref|YP_007280490.1| - 0.044 13.2 0.0 0.099 12.0 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|433590994|ref|YP_007280490.1| - 0.045 13.8 0.1 0.094 12.8 0.0 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DUF2325 PF10087.9 gi|433590994|ref|YP_007280490.1| - 0.056 13.6 0.0 0.11 12.6 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2325) ADH_zinc_N PF00107.26 gi|433590994|ref|YP_007280490.1| - 0.17 11.9 0.0 3.9 7.5 0.0 2.0 1 1 1 2 2 2 0 Zinc-binding dehydrogenase TrkH PF02386.16 gi|433590995|ref|YP_007280491.1| - 1.7e-75 254.4 18.4 3.7e-75 253.3 18.4 1.4 1 1 0 1 1 1 1 Cation transport protein MtrG PF04210.13 gi|433590995|ref|YP_007280491.1| - 0.26 11.2 1.3 0.49 10.3 0.2 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G TrkA_N PF02254.18 gi|433590997|ref|YP_007280493.1| - 6.1e-51 171.6 6.5 1.3e-25 89.9 1.8 2.6 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|433590997|ref|YP_007280493.1| - 2.7e-29 100.8 12.5 4.8e-16 58.3 0.1 3.9 4 0 0 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|433590997|ref|YP_007280493.1| - 8.6e-15 55.1 4.7 7.7e-08 32.7 1.1 2.7 2 1 1 3 3 3 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|433590997|ref|YP_007280493.1| - 2.3e-09 37.4 0.2 0.0028 17.7 0.1 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|433590997|ref|YP_007280493.1| - 3.8e-09 36.9 2.1 0.00015 22.0 0.8 2.6 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|433590997|ref|YP_007280493.1| - 4.4e-08 33.2 5.3 0.003 17.5 0.1 3.0 3 0 0 3 3 3 2 NAD(P)H-binding F420_oxidored PF03807.17 gi|433590997|ref|YP_007280493.1| - 1.2e-06 29.0 1.6 0.021 15.4 0.1 4.1 3 1 1 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|433590997|ref|YP_007280493.1| - 2.6e-06 26.9 0.0 0.031 13.5 0.0 2.4 2 0 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|433590997|ref|YP_007280493.1| - 5.9e-06 25.7 1.3 0.0023 17.3 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|433590997|ref|YP_007280493.1| - 1.8e-05 24.4 0.1 0.00029 20.5 0.0 2.7 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|433590997|ref|YP_007280493.1| - 4.1e-05 23.5 0.1 0.0098 15.8 0.1 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|433590997|ref|YP_007280493.1| - 0.00013 21.3 0.2 0.062 12.5 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|433590997|ref|YP_007280493.1| - 0.00025 20.4 0.6 0.18 11.1 0.0 3.0 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|433590997|ref|YP_007280493.1| - 0.00026 21.2 0.1 0.031 14.4 0.1 2.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 gi|433590997|ref|YP_007280493.1| - 0.00066 20.2 0.9 1.5 9.4 0.2 2.9 3 1 0 3 3 2 2 XdhC Rossmann domain adh_short PF00106.25 gi|433590997|ref|YP_007280493.1| - 0.0026 17.3 0.8 0.47 9.9 0.0 2.6 3 0 0 3 3 2 1 short chain dehydrogenase ADH_zinc_N PF00107.26 gi|433590997|ref|YP_007280493.1| - 0.0026 17.7 0.5 0.053 13.5 0.0 3.1 3 2 1 4 4 4 1 Zinc-binding dehydrogenase Pyr_redox PF00070.27 gi|433590997|ref|YP_007280493.1| - 0.0033 18.0 3.3 0.24 12.0 0.1 3.0 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|433590997|ref|YP_007280493.1| - 0.0048 16.5 1.9 0.042 13.4 0.2 2.8 2 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|433590997|ref|YP_007280493.1| - 0.0059 16.6 0.0 0.76 9.7 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.22 gi|433590997|ref|YP_007280493.1| - 0.01 16.7 0.9 2 9.3 0.1 2.7 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Castor_Poll_mid PF06241.12 gi|433590997|ref|YP_007280493.1| - 0.02 14.9 0.1 1.1 9.2 0.0 2.8 3 0 0 3 3 2 0 Castor and Pollux, part of voltage-gated ion channel DAO PF01266.24 gi|433590997|ref|YP_007280493.1| - 0.037 13.6 0.6 0.037 13.6 0.6 2.4 2 1 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|433590997|ref|YP_007280493.1| - 0.086 13.1 0.1 1.6 9.0 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|433590997|ref|YP_007280493.1| - 0.11 11.9 0.0 3.3 7.0 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DHFR_1 PF00186.19 gi|433590997|ref|YP_007280493.1| - 0.16 11.7 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 Dihydrofolate reductase Rossmann-like PF10727.9 gi|433590997|ref|YP_007280493.1| - 0.37 10.6 2.6 1.2 9.0 0.9 2.6 2 1 0 2 2 2 0 Rossmann-like domain ThiF PF00899.21 gi|433590997|ref|YP_007280493.1| - 1.1 8.6 2.8 55 3.0 0.3 3.2 3 1 1 4 4 3 0 ThiF family Lactamase_B_2 PF12706.7 gi|433590998|ref|YP_007280494.1| - 3.4e-10 39.8 1.6 3.1e-07 30.1 0.1 2.6 3 0 0 3 3 3 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|433590998|ref|YP_007280494.1| - 3.7e-07 30.3 2.3 3.7e-07 30.3 2.3 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|433590998|ref|YP_007280494.1| - 9.6e-06 25.4 0.3 0.00046 20.1 0.0 2.8 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain polyprenyl_synt PF00348.17 gi|433590999|ref|YP_007280495.1| - 4.5e-66 222.5 0.3 5.3e-66 222.3 0.3 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase tRNA-synt_1c PF00749.21 gi|433591001|ref|YP_007280497.1| - 5.3e-60 202.9 0.0 6.6e-60 202.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|433591001|ref|YP_007280497.1| - 6.9e-18 65.1 0.0 2.8e-17 63.1 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF456 PF04306.13 gi|433591003|ref|YP_007280499.1| - 7.6e-25 87.8 29.1 7.6e-25 87.8 29.1 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF456) Tmemb_40 PF10160.9 gi|433591003|ref|YP_007280499.1| - 0.32 10.4 5.9 0.45 9.9 5.9 1.3 1 0 0 1 1 1 0 Predicted membrane protein adh_short PF00106.25 gi|433591004|ref|YP_007280500.1| - 4.6e-32 111.1 0.0 6e-32 110.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|433591004|ref|YP_007280500.1| - 8.6e-23 81.1 0.3 1.1e-22 80.8 0.3 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|433591004|ref|YP_007280500.1| - 1.3e-06 28.4 0.1 2.1e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433591004|ref|YP_007280500.1| - 3.7e-05 23.3 0.2 6.1e-05 22.6 0.2 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|433591004|ref|YP_007280500.1| - 9.8e-05 22.3 0.9 0.00015 21.7 0.9 1.6 1 1 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 gi|433591004|ref|YP_007280500.1| - 0.12 12.9 0.1 0.27 11.8 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent HalOD1 PF18545.1 gi|433591005|ref|YP_007280501.1| - 6.2e-18 64.8 0.0 2.7e-17 62.8 0.0 1.7 1 1 1 2 2 2 1 Halobacterial output domain 1 CorC_HlyC PF03471.17 gi|433591005|ref|YP_007280501.1| - 0.067 13.2 0.0 0.081 12.9 0.0 1.2 1 0 0 1 1 1 0 Transporter associated domain Helicase_RecD PF05127.14 gi|433591006|ref|YP_007280502.1| - 2.1e-49 167.8 0.0 3.2e-49 167.2 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|433591006|ref|YP_007280502.1| - 1e-42 146.1 0.0 7.5e-27 94.2 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|433591006|ref|YP_007280502.1| - 1.6e-24 85.7 0.0 6.4e-23 80.5 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|433591006|ref|YP_007280502.1| - 4e-10 39.7 4.1 1.1e-09 38.3 3.2 2.2 2 0 0 2 2 2 1 AAA domain Acetyltransf_7 PF13508.7 gi|433591006|ref|YP_007280502.1| - 0.0088 16.5 0.0 0.024 15.0 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain BTRD1 PF17660.1 gi|433591006|ref|YP_007280502.1| - 0.055 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial tandem repeat domain 1 Acetyltransf_10 PF13673.7 gi|433591006|ref|YP_007280502.1| - 0.062 13.2 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|433591006|ref|YP_007280502.1| - 0.14 12.1 0.0 0.35 10.9 0.0 1.7 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_1 PF00583.25 gi|433591006|ref|YP_007280502.1| - 0.14 12.4 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Phage_tail_X PF05489.12 gi|433591007|ref|YP_007280503.1| - 0.092 12.4 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Phage Tail Protein X MCRA PF06100.11 gi|433591008|ref|YP_007280504.1| - 3.2e-214 712.3 0.0 3.6e-214 712.2 0.0 1.0 1 0 0 1 1 1 1 MCRA family NAD_binding_8 PF13450.6 gi|433591008|ref|YP_007280504.1| - 3.3e-05 24.0 0.1 6.8e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|433591008|ref|YP_007280504.1| - 0.00022 21.0 0.1 0.0008 19.1 0.1 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Ribosomal_L7Ae PF01248.26 gi|433591010|ref|YP_007280506.1| - 5.7e-25 86.9 0.0 6.6e-25 86.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|433591010|ref|YP_007280506.1| - 1.4e-05 24.8 0.0 2.1e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|433591010|ref|YP_007280506.1| - 0.06 13.8 0.1 0.14 12.7 0.1 1.7 1 1 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.12 gi|433591010|ref|YP_007280506.1| - 0.064 13.5 1.1 10 6.5 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) DUF433 PF04255.14 gi|433591010|ref|YP_007280506.1| - 0.073 12.9 0.6 1.8 8.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF433) VirionAssem_T7 PF11653.8 gi|433591010|ref|YP_007280506.1| - 0.62 10.6 3.3 0.77 10.3 1.1 2.0 1 1 1 2 2 2 0 Bacteriophage T7 virion assembly protein Ribosomal_S28e PF01200.18 gi|433591011|ref|YP_007280507.1| - 2.4e-28 97.9 0.8 2.7e-28 97.8 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|433591012|ref|YP_007280508.1| - 5.4e-22 77.8 0.0 6.6e-22 77.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e Merozoite_SPAM PF07133.11 gi|433591012|ref|YP_007280508.1| - 2.4 8.1 19.7 2.7 7.9 19.7 1.2 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) NDK PF00334.19 gi|433591013|ref|YP_007280509.1| - 1.5e-52 177.2 0.0 1.8e-52 177.0 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Sod_Fe_N PF00081.22 gi|433591015|ref|YP_007280511.1| - 2.2e-29 101.7 0.4 4.3e-29 100.8 0.4 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|433591015|ref|YP_007280511.1| - 3.8e-28 97.7 0.0 5.6e-28 97.1 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain FAD-oxidase_C PF02913.19 gi|433591016|ref|YP_007280512.1| - 2.9e-60 204.0 0.2 5.1e-60 203.2 0.2 1.4 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|433591016|ref|YP_007280512.1| - 4.4e-40 136.6 0.2 1.2e-39 135.2 0.2 1.8 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|433591016|ref|YP_007280512.1| - 1.2e-10 41.7 3.7 2.6e-10 40.6 3.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|433591016|ref|YP_007280512.1| - 5.2e-10 39.7 3.8 9.3e-10 38.9 3.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433591016|ref|YP_007280512.1| - 3.5e-05 23.8 3.1 0.027 14.6 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|433591016|ref|YP_007280512.1| - 0.00092 19.8 4.9 0.0023 18.5 4.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|433591016|ref|YP_007280512.1| - 0.0075 16.3 11.3 0.28 11.4 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|433591016|ref|YP_007280512.1| - 0.01 16.0 6.1 0.053 13.7 6.6 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain CCG PF02754.16 gi|433591016|ref|YP_007280512.1| - 0.017 15.3 0.2 0.43 10.8 0.1 3.0 2 0 0 2 2 2 0 Cysteine-rich domain Fer4 PF00037.27 gi|433591016|ref|YP_007280512.1| - 0.027 14.3 12.7 0.17 11.7 3.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|433591016|ref|YP_007280512.1| - 0.06 14.3 3.5 0.14 13.1 3.5 1.7 1 0 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|433591016|ref|YP_007280512.1| - 0.3 11.7 12.8 0.47 11.1 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|433591016|ref|YP_007280512.1| - 0.71 10.1 9.0 0.14 12.3 0.4 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|433591016|ref|YP_007280512.1| - 2.9 8.1 12.8 1.1 9.5 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|433591016|ref|YP_007280512.1| - 4.5 8.2 5.5 6.7 7.6 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain PIN_5 PF08745.11 gi|433591017|ref|YP_007280513.1| - 1.7e-78 262.8 0.2 1.9e-78 262.6 0.2 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease HyaE PF07449.11 gi|433591017|ref|YP_007280513.1| - 0.018 15.0 0.1 1 9.3 0.1 2.3 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE Lig_C PF18330.1 gi|433591018|ref|YP_007280514.1| - 6.6e-44 148.9 0.0 1.2e-43 148.0 0.0 1.5 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|433591018|ref|YP_007280514.1| - 5.2e-14 52.9 0.0 7.8e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 RNA ligase TFIID_20kDa PF03847.13 gi|433591019|ref|YP_007280515.1| - 0.13 12.8 0.1 0.17 12.4 0.1 1.2 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A Lactamase_B PF00753.27 gi|433591021|ref|YP_007280517.1| - 3.8e-21 76.0 12.1 6.5e-11 42.6 4.3 2.1 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433591021|ref|YP_007280517.1| - 0.00018 21.1 2.1 0.00029 20.4 2.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|433591021|ref|YP_007280517.1| - 0.059 12.8 0.0 0.089 12.2 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain HTH_IclR PF09339.10 gi|433591022|ref|YP_007280518.1| - 8.8e-05 22.2 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433591022|ref|YP_007280518.1| - 0.012 15.2 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TctB PF07331.11 gi|433591022|ref|YP_007280518.1| - 0.045 14.0 0.8 0.18 12.1 0.0 1.9 2 0 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family Antimicrobial10 PF08105.11 gi|433591022|ref|YP_007280518.1| - 0.052 13.6 0.9 0.1 12.7 0.0 1.9 2 0 0 2 2 2 0 Metchnikowin family MarR_2 PF12802.7 gi|433591022|ref|YP_007280518.1| - 0.094 12.6 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|433591022|ref|YP_007280518.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_integrase PF00589.22 gi|433591023|ref|YP_007280519.1| - 2.1e-16 60.2 0.3 4.8e-16 59.0 0.3 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|433591023|ref|YP_007280519.1| - 1.6e-05 25.3 2.2 2.1e-05 24.9 0.1 2.3 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Cdc6_C PF09079.11 gi|433591025|ref|YP_007280521.1| - 2.5e-11 43.4 0.0 6e-11 42.2 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|433591025|ref|YP_007280521.1| - 3.5e-11 43.7 0.0 7.7e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|433591025|ref|YP_007280521.1| - 3.1e-10 40.7 0.5 2.9e-09 37.6 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|433591025|ref|YP_007280521.1| - 3.7e-09 37.0 0.0 1.1e-08 35.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|433591025|ref|YP_007280521.1| - 4.5e-05 22.7 0.0 7.6e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.12 gi|433591025|ref|YP_007280521.1| - 5.5e-05 23.1 0.0 0.00011 22.1 0.0 1.5 1 1 0 1 1 1 1 NACHT domain TniB PF05621.11 gi|433591025|ref|YP_007280521.1| - 0.00014 21.3 0.0 0.00058 19.3 0.0 2.0 1 1 0 1 1 1 1 Bacterial TniB protein AAA_24 PF13479.6 gi|433591025|ref|YP_007280521.1| - 0.0014 18.4 0.1 0.0031 17.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|433591025|ref|YP_007280521.1| - 0.0014 18.2 0.0 0.0044 16.6 0.0 1.8 1 0 0 1 1 1 1 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|433591025|ref|YP_007280521.1| - 0.0016 18.4 0.0 0.0034 17.3 0.0 1.6 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|433591025|ref|YP_007280521.1| - 0.0042 17.0 0.0 0.03 14.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_5 PF07728.14 gi|433591025|ref|YP_007280521.1| - 0.0056 16.7 0.2 0.038 14.0 0.2 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|433591025|ref|YP_007280521.1| - 0.0093 15.7 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain Rad17 PF03215.15 gi|433591025|ref|YP_007280521.1| - 0.016 15.1 0.0 0.14 12.1 0.0 2.1 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_32 PF13654.6 gi|433591025|ref|YP_007280521.1| - 0.018 13.9 0.2 1.4 7.6 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|433591025|ref|YP_007280521.1| - 0.02 15.3 0.0 0.033 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|433591025|ref|YP_007280521.1| - 0.025 14.9 0.0 0.11 12.9 0.0 2.1 2 0 0 2 2 1 0 RNA helicase ABC_tran PF00005.27 gi|433591025|ref|YP_007280521.1| - 0.044 14.3 0.1 0.31 11.5 0.0 2.3 1 1 1 2 2 2 0 ABC transporter AAA_30 PF13604.6 gi|433591025|ref|YP_007280521.1| - 0.055 13.2 0.1 0.12 12.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain Mg_chelatase PF01078.21 gi|433591025|ref|YP_007280521.1| - 0.067 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|433591025|ref|YP_007280521.1| - 0.085 13.0 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Roc PF08477.13 gi|433591025|ref|YP_007280521.1| - 0.09 13.0 0.1 0.17 12.1 0.1 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|433591025|ref|YP_007280521.1| - 0.12 12.9 0.1 0.99 10.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_6 PF12774.7 gi|433591025|ref|YP_007280521.1| - 0.15 11.0 0.0 0.26 10.2 0.0 1.3 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_25 PF13481.6 gi|433591025|ref|YP_007280521.1| - 0.83 9.2 3.5 1.2 8.7 0.4 2.6 2 1 0 2 2 2 0 AAA domain LOR PF04525.12 gi|433591027|ref|YP_007280523.1| - 0.0095 15.5 0.2 0.064 12.8 0.1 2.1 2 1 0 2 2 2 1 LURP-one-related E1-E2_ATPase PF00122.20 gi|433591029|ref|YP_007280525.1| - 1.3e-44 151.9 4.1 1.3e-44 151.9 4.1 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433591029|ref|YP_007280525.1| - 1.3e-30 107.3 2.3 1.3e-30 107.3 2.3 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|433591029|ref|YP_007280525.1| - 8.9e-13 48.5 0.0 2.8e-12 46.9 0.0 1.9 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|433591029|ref|YP_007280525.1| - 0.0042 16.8 0.4 0.032 14.0 1.4 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|433591029|ref|YP_007280525.1| - 0.017 15.8 0.6 0.041 14.6 0.6 1.7 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase DUF1953 PF09196.10 gi|433591029|ref|YP_007280525.1| - 0.096 12.5 0.0 0.096 12.5 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1953) Hydrolase_6 PF13344.6 gi|433591029|ref|YP_007280525.1| - 0.13 12.4 0.0 1 9.5 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Bac_export_2 PF01312.19 gi|433591029|ref|YP_007280525.1| - 0.6 9.3 3.1 4.5 6.4 0.4 2.2 2 0 0 2 2 2 0 FlhB HrpN YscU SpaS Family Pirin PF02678.16 gi|433591030|ref|YP_007280526.1| - 2.7e-13 49.8 0.2 4.8e-13 49.0 0.2 1.4 1 0 0 1 1 1 1 Pirin TetR_C_6 PF13977.6 gi|433591031|ref|YP_007280527.1| - 1.3e-16 60.8 1.6 2.3e-16 60.0 1.6 1.4 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|433591031|ref|YP_007280527.1| - 5.2e-13 48.6 0.2 9.7e-13 47.7 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 gi|433591031|ref|YP_007280527.1| - 1.9e-05 24.9 0.9 4e-05 23.9 0.8 1.7 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|433591031|ref|YP_007280527.1| - 0.0011 19.2 0.2 0.0031 17.7 0.1 1.9 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|433591031|ref|YP_007280527.1| - 0.0012 19.0 3.1 0.0041 17.3 2.8 2.2 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 gi|433591031|ref|YP_007280527.1| - 0.0068 16.7 0.0 0.023 15.0 0.0 1.9 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|433591031|ref|YP_007280527.1| - 0.0069 16.5 0.1 0.012 15.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_27 PF17935.1 gi|433591031|ref|YP_007280527.1| - 0.021 14.9 0.6 0.052 13.6 0.0 1.9 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|433591031|ref|YP_007280527.1| - 0.063 13.4 0.2 0.16 12.1 0.0 1.8 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|433591031|ref|YP_007280527.1| - 0.092 12.8 0.0 0.27 11.4 0.0 1.8 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain MatE PF01554.18 gi|433591032|ref|YP_007280528.1| - 8.3e-60 201.1 32.9 1.8e-34 118.7 14.1 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|433591032|ref|YP_007280528.1| - 5.8e-05 23.2 39.8 0.0016 18.5 16.9 4.7 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain EamA PF00892.20 gi|433591033|ref|YP_007280529.1| - 4.8e-35 120.7 41.4 7.9e-21 74.7 19.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|433591033|ref|YP_007280529.1| - 0.0014 18.7 1.8 0.0014 18.7 1.8 2.2 2 0 0 2 2 2 1 Putative transmembrane family 234 PHO4 PF01384.20 gi|433591034|ref|YP_007280530.1| - 2.1e-41 142.1 19.6 3.5e-41 141.4 19.6 1.3 1 0 0 1 1 1 1 Phosphate transporter family DDE_Tnp_1 PF01609.21 gi|433591036|ref|YP_007280532.1| - 2.6e-17 63.2 0.0 4.1e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433591036|ref|YP_007280532.1| - 9.2e-05 22.4 0.0 0.00018 21.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) Response_reg PF00072.24 gi|433591037|ref|YP_007280533.1| - 0.00029 21.0 0.1 0.0003 20.9 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain LPD5 PF18799.1 gi|433591037|ref|YP_007280533.1| - 0.14 12.6 0.0 0.14 12.5 0.0 1.1 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 5 DDE_Tnp_1 PF01609.21 gi|433591039|ref|YP_007280535.1| - 4.4e-10 39.6 3.0 6.8e-10 38.9 3.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433591039|ref|YP_007280535.1| - 0.19 11.8 0.6 0.48 10.5 0.3 1.8 2 0 0 2 2 2 0 Transposase domain (DUF772) DDE_5 PF13546.6 gi|433591040|ref|YP_007280536.1| - 3.6e-21 75.7 0.0 5.2e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|433591040|ref|YP_007280536.1| - 1.9e-12 47.3 0.0 2.8e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433591040|ref|YP_007280536.1| - 0.00011 21.5 0.0 0.00055 19.3 0.0 1.9 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 Response_reg PF00072.24 gi|433591041|ref|YP_007280537.1| - 1.8e-16 60.3 0.0 2e-16 60.1 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Caps_synth_CapC PF14102.6 gi|433591042|ref|YP_007280538.1| - 3.2e-25 88.9 26.7 5.2e-21 75.3 8.2 2.8 2 0 0 2 2 2 2 Capsule biosynthesis CapC DUF1508 PF07411.12 gi|433591043|ref|YP_007280539.1| - 0.00078 19.3 0.2 0.12 12.2 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1508) DDE_Tnp_IS1595 PF12762.7 gi|433591044|ref|YP_007280540.1| - 3.5e-20 72.6 0.0 4.8e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|433591044|ref|YP_007280540.1| - 2.2e-10 40.3 0.6 4.1e-10 39.5 0.6 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|433591044|ref|YP_007280540.1| - 4e-05 23.2 3.3 8.7e-05 22.2 3.3 1.6 1 0 0 1 1 1 1 InsA N-terminal domain zf-Dof PF02701.15 gi|433591044|ref|YP_007280540.1| - 0.038 14.1 4.2 0.073 13.2 4.2 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger DUF2089 PF09862.9 gi|433591044|ref|YP_007280540.1| - 0.045 13.8 0.2 0.079 13.0 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) Zn-ribbon_8 PF09723.10 gi|433591044|ref|YP_007280540.1| - 0.1 12.7 0.8 17 5.6 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.6 gi|433591044|ref|YP_007280540.1| - 0.22 12.2 7.1 1 10.1 0.7 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.19 gi|433591044|ref|YP_007280540.1| - 0.23 11.3 2.7 0.46 10.3 2.7 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Pilin_N PF07790.11 gi|433591045|ref|YP_007280541.1| - 0.039 14.9 5.3 0.095 13.6 4.5 2.3 1 1 1 2 2 2 0 Archaeal Type IV pilin, N-terminal DDE_Tnp_1 PF01609.21 gi|433591046|ref|YP_007280542.1| - 2.6e-17 63.2 0.0 4.1e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433591046|ref|YP_007280542.1| - 9.2e-05 22.4 0.0 0.00018 21.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) PAS_4 PF08448.10 gi|433591047|ref|YP_007280543.1| - 3.2e-59 197.9 19.5 3.1e-15 56.4 0.2 6.8 7 0 0 7 7 7 5 PAS fold PAS PF00989.25 gi|433591047|ref|YP_007280543.1| - 2e-37 127.7 3.1 9.8e-17 61.0 0.1 5.8 5 1 0 5 5 5 4 PAS fold PAS_9 PF13426.7 gi|433591047|ref|YP_007280543.1| - 3.3e-36 123.7 2.2 2.1e-13 50.4 0.0 5.6 5 0 0 5 5 5 5 PAS domain PAS_3 PF08447.12 gi|433591047|ref|YP_007280543.1| - 4.3e-26 91.0 0.6 1.6e-12 47.6 0.1 4.2 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|433591047|ref|YP_007280543.1| - 1e-19 70.1 0.3 1.6e-06 28.0 0.0 5.0 4 0 0 4 4 4 4 PAS domain GAF_2 PF13185.6 gi|433591047|ref|YP_007280543.1| - 3.4e-19 69.5 9.2 1.1e-10 41.9 0.4 4.8 6 0 0 6 6 6 2 GAF domain HATPase_c PF02518.26 gi|433591047|ref|YP_007280543.1| - 5.3e-16 59.1 0.3 1.9e-15 57.3 0.3 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|433591047|ref|YP_007280543.1| - 2.8e-14 53.6 0.2 7.6e-06 26.3 0.0 3.9 4 0 0 4 4 4 2 GAF domain GAF PF01590.26 gi|433591047|ref|YP_007280543.1| - 4.4e-14 53.2 0.2 2.5e-09 37.9 0.1 3.6 3 0 0 3 3 3 2 GAF domain HisKA PF00512.25 gi|433591047|ref|YP_007280543.1| - 6e-14 51.8 0.5 6e-14 51.8 0.5 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|433591047|ref|YP_007280543.1| - 1.3e-12 47.9 0.0 3.8e-12 46.3 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.15 gi|433591047|ref|YP_007280543.1| - 0.0017 18.6 0.2 0.0065 16.7 0.0 2.2 2 0 0 2 2 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_10 PF13596.6 gi|433591047|ref|YP_007280543.1| - 0.0044 17.6 0.0 0.097 13.3 0.0 3.0 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.7 gi|433591047|ref|YP_007280543.1| - 0.0059 16.8 1.2 14 5.9 0.0 4.6 4 1 0 4 4 4 0 PAS fold MarR_2 PF12802.7 gi|433591048|ref|YP_007280544.1| - 1.3e-07 31.4 0.0 2e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433591048|ref|YP_007280544.1| - 0.00071 19.4 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.15 gi|433591048|ref|YP_007280544.1| - 0.0012 18.4 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR PF01047.22 gi|433591048|ref|YP_007280544.1| - 0.0043 16.9 0.0 0.0076 16.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|433591048|ref|YP_007280544.1| - 0.0045 16.9 0.0 0.0061 16.5 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|433591048|ref|YP_007280544.1| - 0.0077 16.6 0.0 0.01 16.2 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 gi|433591048|ref|YP_007280544.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433591048|ref|YP_007280544.1| - 0.011 15.5 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|433591048|ref|YP_007280544.1| - 0.011 15.3 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|433591048|ref|YP_007280544.1| - 0.017 14.9 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|433591048|ref|YP_007280544.1| - 0.02 15.1 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.12 gi|433591048|ref|YP_007280544.1| - 0.02 15.1 0.0 0.033 14.4 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein DUF4423 PF14394.6 gi|433591048|ref|YP_007280544.1| - 0.032 13.9 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Sigma70_r4_2 PF08281.12 gi|433591048|ref|YP_007280544.1| - 0.049 13.3 0.0 0.084 12.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|433591048|ref|YP_007280544.1| - 0.086 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|433591048|ref|YP_007280544.1| - 0.12 12.9 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Hydrolase_6 PF13344.6 gi|433591049|ref|YP_007280545.1| - 2e-23 82.4 0.0 1.1e-22 80.1 0.0 2.2 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase NUDIX PF00293.28 gi|433591049|ref|YP_007280545.1| - 6.9e-15 55.2 0.1 1.5e-14 54.2 0.1 1.5 1 0 0 1 1 1 1 NUDIX domain Hydrolase_like PF13242.6 gi|433591049|ref|YP_007280545.1| - 6.5e-14 51.8 0.8 5.9e-13 48.7 0.1 2.6 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|433591049|ref|YP_007280545.1| - 4.4e-09 36.9 0.3 7.5e-09 36.2 0.3 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|433591049|ref|YP_007280545.1| - 0.00012 22.3 0.3 0.0035 17.5 0.0 2.8 3 1 0 3 3 3 1 Haloacid dehalogenase-like hydrolase IclR PF01614.18 gi|433591050|ref|YP_007280546.1| - 1e-31 109.4 0.0 1.9e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|433591050|ref|YP_007280546.1| - 1e-07 31.6 0.0 2.4e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433591050|ref|YP_007280546.1| - 3.7e-06 26.4 0.0 8.9e-06 25.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|433591050|ref|YP_007280546.1| - 3.1e-05 23.9 0.0 6.3e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.22 gi|433591050|ref|YP_007280546.1| - 7.5e-05 22.6 0.0 0.00046 20.0 0.0 2.2 3 0 0 3 3 3 1 MarR family MarR_2 PF12802.7 gi|433591050|ref|YP_007280546.1| - 0.00019 21.3 0.0 0.00058 19.7 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|433591050|ref|YP_007280546.1| - 0.00024 20.9 0.0 0.00056 19.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|433591050|ref|YP_007280546.1| - 0.00038 20.9 0.0 0.0056 17.2 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_41 PF14502.6 gi|433591050|ref|YP_007280546.1| - 0.0015 18.2 0.0 0.005 16.5 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|433591050|ref|YP_007280546.1| - 0.0021 18.1 0.1 0.0077 16.3 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain PadR PF03551.14 gi|433591050|ref|YP_007280546.1| - 0.004 17.1 0.0 0.066 13.2 0.0 2.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF4423 PF14394.6 gi|433591050|ref|YP_007280546.1| - 0.008 15.9 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_11 PF08279.12 gi|433591050|ref|YP_007280546.1| - 0.012 15.6 0.0 0.056 13.4 0.0 2.1 2 1 1 3 3 3 0 HTH domain TrmB PF01978.19 gi|433591050|ref|YP_007280546.1| - 0.028 14.3 0.0 0.15 11.9 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|433591050|ref|YP_007280546.1| - 0.053 13.7 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC FaeA PF04703.12 gi|433591050|ref|YP_007280546.1| - 0.12 12.8 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein ELFV_dehydrog PF00208.21 gi|433591051|ref|YP_007280547.1| - 2.5e-69 233.7 0.0 3.3e-69 233.3 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|433591051|ref|YP_007280547.1| - 5.8e-56 187.9 0.0 1e-55 187.1 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|433591051|ref|YP_007280547.1| - 0.025 13.9 0.0 0.048 13.0 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|433591051|ref|YP_007280547.1| - 0.13 11.6 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 ThiF family Aminotran_3 PF00202.21 gi|433591052|ref|YP_007280548.1| - 4.2e-82 276.0 0.0 1.3e-81 274.3 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|433591052|ref|YP_007280548.1| - 0.051 12.9 0.0 0.074 12.3 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Na_H_antiporter PF03553.14 gi|433591053|ref|YP_007280549.1| - 5.9e-56 189.9 46.4 1.6e-52 178.7 22.1 2.2 1 1 1 2 2 2 2 Na+/H+ antiporter family Pilosulin PF17499.2 gi|433591053|ref|YP_007280549.1| - 0.081 13.1 1.5 0.91 9.7 0.0 2.9 3 0 0 3 3 3 0 Ant venom peptides Aminotran_3 PF00202.21 gi|433591054|ref|YP_007280550.1| - 1.6e-83 280.7 0.0 5.5e-83 278.9 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III Arginase PF00491.21 gi|433591055|ref|YP_007280551.1| - 5.7e-74 249.1 3.7 6.6e-74 248.9 3.7 1.0 1 0 0 1 1 1 1 Arginase family IclR PF01614.18 gi|433591056|ref|YP_007280552.1| - 3e-32 111.1 0.7 1e-31 109.4 0.1 1.9 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|433591056|ref|YP_007280552.1| - 8e-11 41.6 0.3 3e-10 39.7 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|433591056|ref|YP_007280552.1| - 3.7e-05 23.5 0.0 9.3e-05 22.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|433591056|ref|YP_007280552.1| - 0.00019 20.9 0.0 0.0011 18.4 0.0 2.4 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|433591056|ref|YP_007280552.1| - 0.0018 18.2 0.0 0.004 17.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|433591056|ref|YP_007280552.1| - 0.0037 17.1 0.0 0.011 15.6 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|433591056|ref|YP_007280552.1| - 0.0098 16.4 0.8 0.025 15.0 0.2 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|433591056|ref|YP_007280552.1| - 0.016 15.1 0.0 0.055 13.4 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|433591056|ref|YP_007280552.1| - 0.057 13.1 0.2 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_20 PF12840.7 gi|433591056|ref|YP_007280552.1| - 0.074 13.1 0.3 0.29 11.2 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DSBA PF01323.20 gi|433591056|ref|YP_007280552.1| - 0.17 11.7 0.1 1.6 8.5 0.0 2.2 2 1 0 2 2 2 0 DSBA-like thioredoxin domain Aldedh PF00171.22 gi|433591057|ref|YP_007280553.1| - 6.4e-145 483.2 0.0 8e-145 482.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|433591057|ref|YP_007280553.1| - 0.013 14.5 0.0 0.031 13.3 0.0 1.5 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) OmdA PF13376.6 gi|433591057|ref|YP_007280553.1| - 0.048 13.7 1.5 0.094 12.7 1.5 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated Na_H_antiporter PF03553.14 gi|433591058|ref|YP_007280554.1| - 1.9e-58 198.1 25.6 1.9e-58 198.1 25.6 2.8 1 1 2 3 3 3 2 Na+/H+ antiporter family CcmD PF04995.14 gi|433591058|ref|YP_007280554.1| - 0.32 11.1 0.1 0.32 11.1 0.1 4.2 5 0 0 5 5 5 0 Heme exporter protein D (CcmD) TPP_enzyme_N PF02776.18 gi|433591059|ref|YP_007280555.1| - 9e-40 136.1 0.3 1e-36 126.1 0.1 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|433591059|ref|YP_007280555.1| - 2.3e-35 121.6 0.0 4.1e-35 120.8 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|433591059|ref|YP_007280555.1| - 2.8e-31 108.1 0.2 1.2e-30 106.0 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain IclR PF01614.18 gi|433591060|ref|YP_007280556.1| - 1.7e-24 86.1 0.1 4.5e-24 84.7 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|433591060|ref|YP_007280556.1| - 7.2e-11 41.7 2.5 3.9e-10 39.4 0.1 2.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|433591060|ref|YP_007280556.1| - 5.7e-06 26.1 0.0 1.6e-05 24.6 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|433591060|ref|YP_007280556.1| - 2.2e-05 23.9 0.0 6.5e-05 22.4 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|433591060|ref|YP_007280556.1| - 8e-05 22.5 0.1 0.00021 21.1 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|433591060|ref|YP_007280556.1| - 0.00011 22.1 0.0 0.00072 19.5 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|433591060|ref|YP_007280556.1| - 0.00017 21.6 0.0 0.00047 20.2 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433591060|ref|YP_007280556.1| - 0.0005 19.9 0.0 0.012 15.5 0.0 2.4 2 1 0 2 2 2 1 MarR family TrmB PF01978.19 gi|433591060|ref|YP_007280556.1| - 0.00058 19.7 0.0 0.0028 17.5 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|433591060|ref|YP_007280556.1| - 0.00095 19.2 0.2 0.0022 18.0 0.2 1.6 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_40 PF14493.6 gi|433591060|ref|YP_007280556.1| - 0.0028 18.1 0.3 0.14 12.6 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|433591060|ref|YP_007280556.1| - 0.004 17.0 0.0 0.014 15.2 0.0 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|433591060|ref|YP_007280556.1| - 0.0094 15.9 0.2 0.021 14.8 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|433591060|ref|YP_007280556.1| - 0.035 14.3 0.1 0.062 13.5 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|433591060|ref|YP_007280556.1| - 0.1 12.8 0.1 0.21 11.8 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|433591060|ref|YP_007280556.1| - 0.11 12.9 0.1 0.22 11.9 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|433591060|ref|YP_007280556.1| - 0.11 12.2 0.0 0.3 10.9 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain Fe_dep_repress PF01325.19 gi|433591060|ref|YP_007280556.1| - 0.13 12.5 0.0 0.33 11.2 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain ECH_1 PF00378.20 gi|433591061|ref|YP_007280557.1| - 2.6e-53 180.9 0.0 3.2e-53 180.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|433591061|ref|YP_007280557.1| - 6.6e-32 111.3 0.0 4.1e-26 92.3 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Carboxyl_trans PF01039.22 gi|433591062|ref|YP_007280558.1| - 1.8e-116 389.7 0.0 2.2e-116 389.5 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain AMP-binding PF00501.28 gi|433591063|ref|YP_007280559.1| - 7.1e-79 265.4 0.0 9.8e-79 264.9 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433591063|ref|YP_007280559.1| - 1.1e-10 42.3 0.5 5.8e-10 40.0 0.0 2.4 2 1 1 3 3 3 1 AMP-binding enzyme C-terminal domain Colicin_im PF03857.13 gi|433591064|ref|YP_007280560.1| - 0.14 12.1 0.2 0.16 11.9 0.2 1.1 1 0 0 1 1 1 0 Colicin immunity protein SSF PF00474.17 gi|433591065|ref|YP_007280561.1| - 1e-54 186.0 41.4 1.8e-54 185.2 41.4 1.4 1 1 0 1 1 1 1 Sodium:solute symporter family DUF4212 PF13937.6 gi|433591065|ref|YP_007280561.1| - 0.021 15.2 0.3 0.021 15.2 0.3 4.7 6 1 0 6 6 6 0 Domain of unknown function (DUF4212) Pox_A14 PF05767.12 gi|433591065|ref|YP_007280561.1| - 5.5 7.2 6.4 1.8 8.8 0.0 3.4 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 HTH_24 PF13412.6 gi|433591067|ref|YP_007280563.1| - 3.8e-07 29.6 0.0 5.6e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433591067|ref|YP_007280563.1| - 1.1e-06 28.4 0.1 1.7e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|433591067|ref|YP_007280563.1| - 1.5e-06 27.9 0.3 2.4e-06 27.3 0.3 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|433591067|ref|YP_007280563.1| - 3.2e-06 26.9 0.2 5.2e-06 26.2 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 gi|433591067|ref|YP_007280563.1| - 2e-05 24.6 0.1 4.2e-05 23.6 0.1 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|433591067|ref|YP_007280563.1| - 3e-05 24.0 0.1 5.3e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|433591067|ref|YP_007280563.1| - 3e-05 23.9 0.0 5.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|433591067|ref|YP_007280563.1| - 3.2e-05 23.7 0.1 6.1e-05 22.8 0.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|433591067|ref|YP_007280563.1| - 5.6e-05 23.1 0.0 8.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix TetR_N PF00440.23 gi|433591067|ref|YP_007280563.1| - 0.0002 21.1 0.1 0.00035 20.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Crp_2 PF13545.6 gi|433591067|ref|YP_007280563.1| - 0.00026 20.9 0.0 0.00038 20.4 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain PadR PF03551.14 gi|433591067|ref|YP_007280563.1| - 0.00029 20.7 0.0 0.00041 20.2 0.0 1.4 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_23 PF13384.6 gi|433591067|ref|YP_007280563.1| - 0.00039 20.1 0.0 0.0006 19.5 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|433591067|ref|YP_007280563.1| - 0.00056 19.5 0.0 0.00095 18.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|433591067|ref|YP_007280563.1| - 0.0016 18.3 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|433591067|ref|YP_007280563.1| - 0.002 18.1 0.0 0.0029 17.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.12 gi|433591067|ref|YP_007280563.1| - 0.01 15.5 0.3 0.055 13.1 0.0 2.1 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_CodY PF08222.11 gi|433591067|ref|YP_007280563.1| - 0.012 15.1 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_36 PF13730.6 gi|433591067|ref|YP_007280563.1| - 0.017 15.1 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.6 gi|433591067|ref|YP_007280563.1| - 0.038 13.8 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_22 PF13309.6 gi|433591067|ref|YP_007280563.1| - 0.054 13.6 0.0 0.098 12.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain MarR PF01047.22 gi|433591067|ref|YP_007280563.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 MarR family FUR PF01475.19 gi|433591067|ref|YP_007280563.1| - 0.16 12.2 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_20 PF12840.7 gi|433591068|ref|YP_007280564.1| - 2e-11 43.7 2.1 3.4e-11 43.0 2.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433591068|ref|YP_007280564.1| - 3.7e-09 36.3 0.7 6.6e-09 35.5 0.7 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|433591068|ref|YP_007280564.1| - 8.9e-08 31.8 0.2 1.5e-07 31.1 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|433591068|ref|YP_007280564.1| - 1.3e-07 31.4 0.0 2e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|433591068|ref|YP_007280564.1| - 1.7e-07 30.7 0.0 2.8e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433591068|ref|YP_007280564.1| - 6.8e-07 29.1 0.0 1e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|433591068|ref|YP_007280564.1| - 1.6e-06 27.9 0.0 2.2e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|433591068|ref|YP_007280564.1| - 1e-05 25.4 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|433591068|ref|YP_007280564.1| - 3.2e-05 23.8 0.0 5.5e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.6 gi|433591068|ref|YP_007280564.1| - 5.4e-05 23.1 0.2 8.1e-05 22.5 0.2 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|433591068|ref|YP_007280564.1| - 0.00035 20.3 1.8 0.00069 19.4 1.8 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain Rrf2 PF02082.20 gi|433591068|ref|YP_007280564.1| - 0.00086 19.6 0.0 0.0013 19.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.6 gi|433591068|ref|YP_007280564.1| - 0.0017 18.4 0.2 0.047 13.7 0.2 2.3 2 0 0 2 2 2 1 Winged helix-turn helix FUR PF01475.19 gi|433591068|ref|YP_007280564.1| - 0.0025 18.0 0.0 0.0035 17.5 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_7 PF02796.15 gi|433591068|ref|YP_007280564.1| - 0.0076 16.3 0.0 0.016 15.3 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_36 PF13730.6 gi|433591068|ref|YP_007280564.1| - 0.014 15.4 0.0 0.027 14.4 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|433591068|ref|YP_007280564.1| - 0.015 15.0 0.1 0.025 14.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DprA_WH PF17782.1 gi|433591068|ref|YP_007280564.1| - 0.023 14.8 3.5 0.038 14.1 3.5 1.4 1 1 0 1 1 1 0 DprA winged helix domain ArsR PF09824.9 gi|433591068|ref|YP_007280564.1| - 0.025 14.2 0.0 0.03 13.9 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Fe_dep_repress PF01325.19 gi|433591068|ref|YP_007280564.1| - 0.03 14.5 0.0 0.048 13.9 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RP-C PF03428.13 gi|433591068|ref|YP_007280564.1| - 0.046 13.4 0.2 0.056 13.1 0.2 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_22 PF13309.6 gi|433591068|ref|YP_007280564.1| - 0.076 13.1 0.1 0.26 11.4 0.1 2.0 1 1 0 1 1 1 0 HTH domain Response_reg PF00072.24 gi|433591069|ref|YP_007280565.1| - 4.1e-20 72.0 1.0 5.9e-20 71.5 1.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|433591069|ref|YP_007280565.1| - 8.5e-10 38.8 6.0 8.5e-10 38.8 6.0 2.1 2 0 0 2 2 2 1 HalX domain BAT PF15915.5 gi|433591070|ref|YP_007280566.1| - 9.7e-33 113.3 11.5 9.7e-33 113.3 11.5 2.5 3 0 0 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|433591070|ref|YP_007280566.1| - 1.9e-17 63.8 1.1 4.2e-17 62.7 0.4 2.0 2 0 0 2 2 2 1 GAF domain HTH_10 PF04967.12 gi|433591070|ref|YP_007280566.1| - 5.7e-16 58.1 0.1 1.1e-15 57.1 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.6 gi|433591070|ref|YP_007280566.1| - 2.2e-07 31.2 0.1 1.2e-06 28.9 0.0 2.2 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|433591070|ref|YP_007280566.1| - 1.2e-06 29.2 0.0 5.1e-06 27.1 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.7 gi|433591070|ref|YP_007280566.1| - 0.00014 22.1 0.0 0.00058 20.1 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|433591070|ref|YP_007280566.1| - 0.00035 20.8 3.7 0.0033 17.6 0.0 3.8 3 1 0 3 3 3 1 PAS fold PAS PF00989.25 gi|433591070|ref|YP_007280566.1| - 0.0014 18.6 0.0 0.0045 17.0 0.0 1.9 1 0 0 1 1 1 1 PAS fold HTH_20 PF12840.7 gi|433591070|ref|YP_007280566.1| - 0.0022 18.0 1.0 0.0059 16.6 0.1 2.3 2 0 0 2 2 1 1 Helix-turn-helix domain GerE PF00196.19 gi|433591070|ref|YP_007280566.1| - 0.0057 16.2 0.1 0.031 13.8 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family PAS_8 PF13188.7 gi|433591070|ref|YP_007280566.1| - 0.02 14.9 0.0 0.06 13.4 0.0 1.8 1 0 0 1 1 1 0 PAS domain Sigma70_r4_2 PF08281.12 gi|433591070|ref|YP_007280566.1| - 0.042 13.5 0.5 0.17 11.6 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 Autoind_bind PF03472.15 gi|433591070|ref|YP_007280566.1| - 0.13 11.7 0.3 0.48 9.9 0.0 2.0 2 0 0 2 2 2 0 Autoinducer binding domain HTH_24 PF13412.6 gi|433591070|ref|YP_007280566.1| - 0.14 11.8 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HATPase_c PF02518.26 gi|433591071|ref|YP_007280567.1| - 6.2e-18 65.3 0.0 1.3e-17 64.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|433591071|ref|YP_007280567.1| - 3.5e-07 30.2 0.7 3.5e-07 30.2 0.7 1.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|433591071|ref|YP_007280567.1| - 0.002 18.1 0.2 0.0093 15.9 0.2 2.2 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain Lant_dehydr_N PF04738.13 gi|433591071|ref|YP_007280567.1| - 0.0036 15.5 1.2 0.0054 14.9 1.2 1.2 1 0 0 1 1 1 1 Lantibiotic dehydratase, N terminus HATPase_c_5 PF14501.6 gi|433591071|ref|YP_007280567.1| - 0.21 11.5 0.0 1.9 8.4 0.0 2.2 1 1 0 1 1 1 0 GHKL domain ABC_tran PF00005.27 gi|433591072|ref|YP_007280568.1| - 2.4e-29 102.6 0.0 3.6e-29 102.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433591072|ref|YP_007280568.1| - 3.8e-13 49.9 0.1 6.6e-08 32.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|433591072|ref|YP_007280568.1| - 2.6e-07 31.3 0.0 1.3e-06 29.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) RsgA_GTPase PF03193.16 gi|433591072|ref|YP_007280568.1| - 0.0063 16.4 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|433591072|ref|YP_007280568.1| - 0.0075 16.8 0.0 0.013 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|433591072|ref|YP_007280568.1| - 0.008 15.9 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|433591072|ref|YP_007280568.1| - 0.042 13.4 0.3 0.34 10.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain SMC_N PF02463.19 gi|433591072|ref|YP_007280568.1| - 0.072 12.5 0.0 4 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|433591072|ref|YP_007280568.1| - 0.098 12.8 0.0 0.27 11.3 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC2_membrane_2 PF12679.7 gi|433591073|ref|YP_007280569.1| - 9.6e-26 90.7 5.4 1.4e-25 90.2 5.4 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|433591073|ref|YP_007280569.1| - 0.00023 20.7 9.5 0.00023 20.7 9.5 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|433591073|ref|YP_007280569.1| - 0.043 13.4 1.5 0.068 12.7 1.5 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|433591073|ref|YP_007280569.1| - 0.92 8.5 6.8 1.3 8.1 6.8 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|433591074|ref|YP_007280570.1| - 4.4e-28 98.4 7.3 1.5e-25 90.1 7.3 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein HATPase_c PF02518.26 gi|433591075|ref|YP_007280571.1| - 2.1e-14 54.0 0.0 4.4e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_7TM PF16927.5 gi|433591075|ref|YP_007280571.1| - 3.3e-13 50.2 11.6 5.1e-13 49.6 11.6 1.3 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c_2 PF13581.6 gi|433591075|ref|YP_007280571.1| - 4.5e-06 26.6 0.5 9.4e-06 25.6 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|433591075|ref|YP_007280571.1| - 8.8e-06 25.6 0.0 2.5e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|433591075|ref|YP_007280571.1| - 1.4e-05 25.3 0.4 0.00016 21.9 0.1 2.7 1 1 1 2 2 2 1 PAS fold HATPase_c_3 PF13589.6 gi|433591075|ref|YP_007280571.1| - 0.00025 20.9 0.0 0.00055 19.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|433591075|ref|YP_007280571.1| - 0.00059 19.8 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold HisKA_4TM PF16926.5 gi|433591075|ref|YP_007280571.1| - 0.0033 17.0 0.5 0.0033 17.0 0.5 2.6 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase PAS_9 PF13426.7 gi|433591075|ref|YP_007280571.1| - 0.023 14.9 0.0 0.17 12.1 0.0 2.4 2 1 0 2 2 2 0 PAS domain SPC12 PF06645.13 gi|433591076|ref|YP_007280572.1| - 0.038 14.1 1.7 0.05 13.7 1.7 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) TM2 PF05154.16 gi|433591076|ref|YP_007280572.1| - 0.069 13.5 1.6 0.39 11.1 1.6 1.9 1 1 0 1 1 1 0 TM2 domain MitoNEET_N PF10660.9 gi|433591077|ref|YP_007280573.1| - 0.13 12.3 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus LpxC PF03331.13 gi|433591078|ref|YP_007280574.1| - 0.063 12.8 0.0 0.077 12.5 0.0 1.1 1 0 0 1 1 1 0 UDP-3-O-acyl N-acetylglycosamine deacetylase VPDSG-CTERM PF18205.1 gi|433591078|ref|YP_007280574.1| - 0.082 12.7 3.1 0.082 12.7 3.1 2.5 3 0 0 3 3 3 0 VPDSG-CTERM motif OrfB_Zn_ribbon PF07282.11 gi|433591080|ref|YP_007280576.1| - 9.5e-22 76.7 0.5 1.8e-21 75.9 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Tubulin_3 PF14881.6 gi|433591080|ref|YP_007280576.1| - 0.039 13.6 0.1 0.094 12.4 0.1 1.6 1 0 0 1 1 1 0 Tubulin domain P63C PF10546.9 gi|433591080|ref|YP_007280576.1| - 0.086 13.4 0.0 0.28 11.8 0.0 1.8 1 0 0 1 1 1 0 P63C domain DUF4041 PF13250.6 gi|433591080|ref|YP_007280576.1| - 0.11 12.3 0.1 0.26 11.2 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4041) Ephrin_rec_like PF07699.13 gi|433591080|ref|YP_007280576.1| - 0.23 11.2 1.9 0.47 10.3 1.9 1.5 1 0 0 1 1 1 0 Putative ephrin-receptor like TFIIB PF00382.19 gi|433591081|ref|YP_007280577.1| - 7.4e-25 86.8 3.8 3.1e-10 40.0 0.2 3.3 3 0 0 3 3 3 3 Transcription factor TFIIB repeat HTH_AsnC-type PF13404.6 gi|433591081|ref|YP_007280577.1| - 2.6e-07 30.3 3.5 0.0029 17.4 0.1 3.7 4 0 0 4 4 4 2 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|433591081|ref|YP_007280577.1| - 7.2e-07 28.5 0.1 0.021 14.3 0.0 2.9 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 gi|433591081|ref|YP_007280577.1| - 1.4e-05 24.9 0.2 0.18 11.7 0.0 2.9 2 0 0 2 2 2 2 HTH domain HTH_23 PF13384.6 gi|433591081|ref|YP_007280577.1| - 5.8e-05 22.8 0.3 0.82 9.5 0.0 3.2 3 0 0 3 3 3 2 Homeodomain-like domain HTH_24 PF13412.6 gi|433591081|ref|YP_007280577.1| - 7.1e-05 22.3 0.0 0.57 9.8 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MerR PF00376.23 gi|433591081|ref|YP_007280577.1| - 7.6e-05 22.4 0.2 0.025 14.4 0.1 3.0 2 0 0 2 2 2 1 MerR family regulatory protein HTH_psq PF05225.16 gi|433591081|ref|YP_007280577.1| - 9.2e-05 22.1 0.3 0.2 11.4 0.0 2.4 2 0 0 2 2 2 2 helix-turn-helix, Psq domain Sigma70_r4 PF04545.16 gi|433591081|ref|YP_007280577.1| - 0.00016 21.1 0.0 0.68 9.5 0.0 2.9 3 0 0 3 3 2 2 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|433591081|ref|YP_007280577.1| - 0.00039 20.1 5.3 0.26 11.1 0.2 3.5 3 0 0 3 3 3 2 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|433591081|ref|YP_007280577.1| - 0.0004 20.0 0.1 0.46 10.2 0.2 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|433591081|ref|YP_007280577.1| - 0.00056 20.0 0.0 0.18 12.0 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 gi|433591081|ref|YP_007280577.1| - 0.0019 17.8 0.0 2.1 8.1 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_6 PF01418.17 gi|433591081|ref|YP_007280577.1| - 0.0028 17.6 0.3 0.62 10.1 0.0 3.5 3 0 0 3 3 3 1 Helix-turn-helix domain, rpiR family HTH_IclR PF09339.10 gi|433591081|ref|YP_007280577.1| - 0.0034 17.1 0.8 0.62 9.9 0.1 3.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_7 PF02796.15 gi|433591081|ref|YP_007280577.1| - 0.005 16.9 1.2 12 6.1 0.0 3.4 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase HTH_5 PF01022.20 gi|433591081|ref|YP_007280577.1| - 0.0054 16.6 0.2 0.13 12.2 0.1 3.0 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family HTH_3 PF01381.22 gi|433591081|ref|YP_007280577.1| - 0.009 16.0 0.2 2.4 8.3 0.1 2.9 2 0 0 2 2 2 1 Helix-turn-helix Rrf2 PF02082.20 gi|433591081|ref|YP_007280577.1| - 0.012 15.9 0.1 11 6.4 0.0 3.2 3 0 0 3 3 3 0 Transcriptional regulator TFIIB_C_1 PF18542.1 gi|433591081|ref|YP_007280577.1| - 0.013 15.5 0.4 0.16 12.0 0.2 2.6 3 0 0 3 3 3 0 Transcription factor IIB C-terminal module 1 MarR_2 PF12802.7 gi|433591081|ref|YP_007280577.1| - 0.013 15.3 1.4 4.3 7.3 0.1 3.2 4 0 0 4 4 3 0 MarR family HTH_38 PF13936.6 gi|433591081|ref|YP_007280577.1| - 0.028 14.2 0.8 9.6 6.1 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain Phage_terminase PF10668.9 gi|433591081|ref|YP_007280577.1| - 0.031 14.3 0.3 50 4.0 0.0 3.4 3 0 0 3 3 3 0 Phage terminase small subunit HTH_17 PF12728.7 gi|433591081|ref|YP_007280577.1| - 0.031 14.5 0.1 0.89 9.8 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|433591081|ref|YP_007280577.1| - 0.034 14.5 1.6 3.6 8.0 0.1 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|433591081|ref|YP_007280577.1| - 0.042 13.7 3.4 4.5 7.1 0.0 3.7 5 0 0 5 5 2 0 HTH DNA binding domain HTH_29 PF13551.6 gi|433591081|ref|YP_007280577.1| - 0.048 13.7 0.0 0.68 10.0 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix HTH_Tnp_1_2 PF13022.6 gi|433591081|ref|YP_007280577.1| - 0.11 12.7 0.1 5.8 7.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase TetR_N PF00440.23 gi|433591081|ref|YP_007280577.1| - 0.12 12.2 5.3 3 7.7 0.1 3.8 4 0 0 4 4 4 0 Bacterial regulatory proteins, tetR family HTH_Tnp_1 PF01527.20 gi|433591081|ref|YP_007280577.1| - 0.13 12.6 0.0 14 6.1 0.0 2.7 2 0 0 2 2 2 0 Transposase MerR_1 PF13411.6 gi|433591081|ref|YP_007280577.1| - 0.14 12.3 0.0 1 9.5 0.0 2.3 2 0 0 2 2 2 0 MerR HTH family regulatory protein UPF0122 PF04297.14 gi|433591081|ref|YP_007280577.1| - 0.5 10.6 4.5 3 8.2 0.0 3.3 4 0 0 4 4 3 0 Putative helix-turn-helix protein, YlxM / p13 like LacI PF00356.21 gi|433591081|ref|YP_007280577.1| - 1.5 8.7 5.4 56 3.6 0.0 3.9 4 0 0 4 4 4 0 Bacterial regulatory proteins, lacI family polyprenyl_synt PF00348.17 gi|433591082|ref|YP_007280578.1| - 0.037 13.1 0.0 0.086 11.9 0.0 1.6 1 1 0 1 1 1 0 Polyprenyl synthetase Glyco_hydro_6 PF01341.17 gi|433591082|ref|YP_007280578.1| - 0.062 13.0 0.0 0.083 12.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 6 DDE_Tnp_1 PF01609.21 gi|433591083|ref|YP_007280579.1| - 4.4e-10 39.6 3.0 6.8e-10 38.9 3.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433591083|ref|YP_007280579.1| - 0.19 11.8 0.6 0.48 10.5 0.3 1.8 2 0 0 2 2 2 0 Transposase domain (DUF772) MatE PF01554.18 gi|433591085|ref|YP_007280581.1| - 3.9e-60 202.2 34.3 1e-34 119.6 15.2 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|433591085|ref|YP_007280581.1| - 0.00013 22.1 15.1 0.00013 22.1 15.1 4.7 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain TetR_N PF00440.23 gi|433591086|ref|YP_007280582.1| - 6.5e-12 45.1 0.1 1.5e-11 43.9 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|433591086|ref|YP_007280582.1| - 1.7e-11 44.4 0.1 2.4e-11 43.9 0.1 1.2 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_11 PF16859.5 gi|433591086|ref|YP_007280582.1| - 0.00055 20.2 0.2 0.00097 19.4 0.2 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 gi|433591086|ref|YP_007280582.1| - 0.011 16.0 0.1 0.03 14.7 0.0 1.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|433591086|ref|YP_007280582.1| - 0.017 15.2 0.0 0.031 14.4 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|433591086|ref|YP_007280582.1| - 0.032 14.4 0.0 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase TetR_C_17 PF17922.1 gi|433591086|ref|YP_007280582.1| - 0.13 12.4 0.0 0.28 11.3 0.0 1.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain ELFV_dehydrog PF00208.21 gi|433591087|ref|YP_007280583.1| - 3.6e-67 226.6 0.0 5.8e-67 225.9 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|433591087|ref|YP_007280583.1| - 9.5e-58 193.7 0.1 1.7e-57 192.9 0.1 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|433591087|ref|YP_007280583.1| - 0.0026 17.2 0.0 0.0057 16.0 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|433591087|ref|YP_007280583.1| - 0.009 15.6 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain HrcA_DNA-bdg PF03444.15 gi|433591088|ref|YP_007280584.1| - 2.3e-37 126.5 0.1 3.4e-37 125.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|433591088|ref|YP_007280584.1| - 1.1e-08 35.3 0.0 1.6e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|433591088|ref|YP_007280584.1| - 6e-07 29.3 0.0 9.8e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|433591088|ref|YP_007280584.1| - 0.0059 16.5 0.0 0.0095 15.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|433591088|ref|YP_007280584.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_terminase PF10668.9 gi|433591088|ref|YP_007280584.1| - 0.15 12.1 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Phage terminase small subunit IclR PF01614.18 gi|433591089|ref|YP_007280585.1| - 2e-24 85.9 0.8 4.6e-24 84.7 0.0 1.9 3 0 0 3 3 3 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|433591089|ref|YP_007280585.1| - 3.1e-08 33.3 0.8 8.4e-08 31.9 0.3 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433591089|ref|YP_007280585.1| - 2.6e-05 23.7 0.1 7.9e-05 22.1 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433591089|ref|YP_007280585.1| - 3.3e-05 23.7 0.4 0.00011 22.0 0.2 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|433591089|ref|YP_007280585.1| - 0.00038 20.3 0.1 0.0011 18.8 0.1 1.9 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|433591089|ref|YP_007280585.1| - 0.00058 19.7 0.9 0.0014 18.6 0.3 1.9 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|433591089|ref|YP_007280585.1| - 0.0011 18.8 0.0 0.0043 16.9 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|433591089|ref|YP_007280585.1| - 0.0024 17.9 0.1 0.007 16.4 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433591089|ref|YP_007280585.1| - 0.0093 15.8 0.1 0.038 13.9 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.12 gi|433591089|ref|YP_007280585.1| - 0.021 14.6 0.1 0.041 13.6 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|433591089|ref|YP_007280585.1| - 0.023 14.9 0.0 0.038 14.2 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Sigma70_r4 PF04545.16 gi|433591089|ref|YP_007280585.1| - 0.028 14.0 0.1 0.1 12.1 0.1 2.0 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.6 gi|433591089|ref|YP_007280585.1| - 0.042 14.3 0.1 0.094 13.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|433591089|ref|YP_007280585.1| - 0.052 13.7 0.1 0.12 12.6 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|433591089|ref|YP_007280585.1| - 0.065 13.0 0.1 0.16 11.8 0.1 1.7 1 0 0 1 1 1 0 HTH DNA binding domain AMP-binding PF00501.28 gi|433591090|ref|YP_007280586.1| - 5.4e-82 275.6 0.0 7.1e-82 275.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme ACAS_N PF16177.5 gi|433591090|ref|YP_007280586.1| - 3.2e-12 46.2 1.1 3.2e-12 46.2 1.1 2.0 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding_C PF13193.6 gi|433591090|ref|YP_007280586.1| - 5e-12 46.6 0.2 9.2e-12 45.8 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DMRL_synthase PF00885.19 gi|433591090|ref|YP_007280586.1| - 0.087 12.7 0.7 5.2 6.9 0.0 2.2 2 0 0 2 2 2 0 6,7-dimethyl-8-ribityllumazine synthase TrkA_N PF02254.18 gi|433591093|ref|YP_007280589.1| - 1.5e-46 157.4 13.3 2.3e-23 82.7 0.3 3.1 4 0 0 4 4 3 2 TrkA-N domain TrkA_C PF02080.21 gi|433591093|ref|YP_007280589.1| - 1.1e-30 105.2 12.5 1.2e-14 53.9 0.2 3.8 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|433591093|ref|YP_007280589.1| - 3e-13 50.1 3.1 3e-07 30.8 1.2 2.8 2 1 0 2 2 2 2 Putative NAD(P)-binding XdhC_C PF13478.6 gi|433591093|ref|YP_007280589.1| - 2.6e-07 31.2 1.9 0.035 14.6 0.0 3.1 3 1 0 3 3 3 2 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|433591093|ref|YP_007280589.1| - 5e-07 29.8 0.0 0.011 15.7 0.1 2.7 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|433591093|ref|YP_007280589.1| - 1.2e-06 29.0 1.3 0.018 15.6 0.2 3.5 2 1 1 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|433591093|ref|YP_007280589.1| - 1.4e-06 28.6 3.0 0.0057 16.9 1.3 2.6 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain Pyr_redox_2 PF07992.14 gi|433591093|ref|YP_007280589.1| - 1.6e-05 24.3 2.0 0.00027 20.3 2.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|433591093|ref|YP_007280589.1| - 1.8e-05 24.8 0.6 0.015 15.4 0.5 2.6 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Castor_Poll_mid PF06241.12 gi|433591093|ref|YP_007280589.1| - 9.7e-05 22.3 0.1 0.2 11.7 0.0 2.7 2 0 0 2 2 2 2 Castor and Pollux, part of voltage-gated ion channel ApbA PF02558.16 gi|433591093|ref|YP_007280589.1| - 0.00011 21.8 0.2 0.0056 16.3 0.2 2.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|433591093|ref|YP_007280589.1| - 0.00014 21.2 1.2 0.14 11.4 0.7 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|433591093|ref|YP_007280589.1| - 0.0002 21.0 0.5 0.0012 18.4 0.1 2.4 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NmrA PF05368.13 gi|433591093|ref|YP_007280589.1| - 0.00022 20.9 0.5 0.61 9.6 0.3 3.1 3 1 1 4 4 3 2 NmrA-like family NAD_binding_2 PF03446.15 gi|433591093|ref|YP_007280589.1| - 0.0003 21.0 0.1 0.35 11.0 0.1 2.6 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|433591093|ref|YP_007280589.1| - 0.00031 20.8 0.0 0.01 15.8 0.0 2.7 3 0 0 3 3 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.27 gi|433591093|ref|YP_007280589.1| - 0.00051 20.5 1.5 1.7 9.3 0.0 3.5 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Rossmann-like PF10727.9 gi|433591093|ref|YP_007280589.1| - 0.00078 19.3 3.5 0.66 9.8 0.5 2.9 2 0 0 2 2 2 2 Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|433591093|ref|YP_007280589.1| - 0.0026 17.1 0.0 2.3 7.5 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|433591093|ref|YP_007280589.1| - 0.012 14.9 0.0 0.63 9.2 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain PglD_N PF17836.1 gi|433591093|ref|YP_007280589.1| - 0.019 15.6 1.2 0.2 12.3 0.9 2.7 2 0 0 2 2 2 0 PglD N-terminal domain adh_short PF00106.25 gi|433591093|ref|YP_007280589.1| - 0.023 14.2 1.2 0.35 10.3 0.0 2.8 3 0 0 3 3 3 0 short chain dehydrogenase PE PF00934.20 gi|433591093|ref|YP_007280589.1| - 0.043 14.1 0.2 0.13 12.6 0.1 1.9 2 0 0 2 2 1 0 PE family ADH_zinc_N PF00107.26 gi|433591093|ref|YP_007280589.1| - 0.061 13.3 1.6 0.52 10.3 0.0 2.6 2 0 0 2 2 2 0 Zinc-binding dehydrogenase DAO PF01266.24 gi|433591093|ref|YP_007280589.1| - 0.13 11.9 2.2 0.25 10.9 0.7 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|433591093|ref|YP_007280589.1| - 0.16 12.2 0.2 5.9 7.2 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Biotin_carb_N PF00289.22 gi|433591093|ref|YP_007280589.1| - 0.24 12.0 0.9 5.9 7.5 0.0 3.1 3 0 0 3 3 3 0 Biotin carboxylase, N-terminal domain T4BSS_DotI_IcmL PF11393.8 gi|433591095|ref|YP_007280591.1| - 0.092 12.2 0.0 0.26 10.8 0.0 1.7 1 1 1 2 2 2 0 Type-IV b secretion system, inner-membrane complex component HalOD1 PF18545.1 gi|433591097|ref|YP_007280593.1| - 2.3e-16 59.8 0.1 2.8e-16 59.5 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 DS PF01916.17 gi|433591099|ref|YP_007280595.1| - 2.9e-100 335.2 0.0 3.3e-100 335.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase CitF PF04223.12 gi|433591099|ref|YP_007280595.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Citrate lyase, alpha subunit (CitF) HEM4 PF02602.15 gi|433591100|ref|YP_007280596.1| - 1.1e-39 136.2 0.8 1.2e-39 136.0 0.8 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DAHP_snth_FXD PF18152.1 gi|433591100|ref|YP_007280596.1| - 0.071 13.0 0.2 0.33 10.8 0.1 2.1 2 0 0 2 2 2 0 DAHP synthase ferredoxin-like domain DDE_3 PF13358.6 gi|433591101|ref|YP_007280597.1| - 1e-30 106.4 0.0 2.5e-30 105.1 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_33 PF13592.6 gi|433591101|ref|YP_007280597.1| - 1.8e-17 62.7 1.1 2.8e-17 62.1 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_29 PF13551.6 gi|433591101|ref|YP_007280597.1| - 9.1e-12 44.8 1.6 8e-10 38.6 0.3 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|433591101|ref|YP_007280597.1| - 4.7e-10 39.4 0.7 1.1e-09 38.3 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_32 PF13565.6 gi|433591101|ref|YP_007280597.1| - 6.1e-08 33.2 0.2 6.1e-08 33.2 0.2 2.5 4 0 0 4 4 4 1 Homeodomain-like domain HTH_23 PF13384.6 gi|433591101|ref|YP_007280597.1| - 0.00069 19.3 0.1 0.0017 18.1 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain DDE_Tnp_ISAZ013 PF07592.11 gi|433591101|ref|YP_007280597.1| - 0.0072 15.3 0.0 1.4 7.8 0.0 2.2 2 0 0 2 2 2 2 Rhodopirellula transposase DDE domain Sigma70_ECF PF07638.11 gi|433591101|ref|YP_007280597.1| - 0.046 13.6 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor HTH_Tnp_Tc3_2 PF01498.18 gi|433591101|ref|YP_007280597.1| - 0.073 13.3 0.0 0.26 11.6 0.0 1.9 2 1 0 2 2 2 0 Transposase HTH_Tnp_IS630 PF01710.16 gi|433591101|ref|YP_007280597.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Transposase Exonuc_VII_S PF02609.16 gi|433591104|ref|YP_007280600.1| - 0.11 12.6 0.3 0.42 10.7 0.1 2.0 2 0 0 2 2 2 0 Exonuclease VII small subunit TFIIE_alpha PF02002.17 gi|433591105|ref|YP_007280601.1| - 1.6e-06 27.9 0.2 2.1e-06 27.6 0.2 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.7 gi|433591105|ref|YP_007280601.1| - 4.6e-05 23.4 0.1 7.2e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|433591105|ref|YP_007280601.1| - 0.00014 22.3 0.1 0.00026 21.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|433591105|ref|YP_007280601.1| - 0.00041 19.8 0.1 0.00083 18.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|433591105|ref|YP_007280601.1| - 0.024 14.5 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|433591105|ref|YP_007280601.1| - 0.052 13.4 0.1 0.077 12.9 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DDE_Tnp_IS240 PF13610.6 gi|433591106|ref|YP_007280602.1| - 2.3e-31 108.9 0.0 3.7e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|433591106|ref|YP_007280602.1| - 1.3e-09 37.7 0.6 3e-09 36.5 0.6 1.6 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 gi|433591106|ref|YP_007280602.1| - 0.0015 18.0 0.1 0.0046 16.5 0.1 1.7 1 1 0 1 1 1 1 Transposase IS66 family rve_2 PF13333.6 gi|433591106|ref|YP_007280602.1| - 0.06 13.5 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain HTH_29 PF13551.6 gi|433591106|ref|YP_007280602.1| - 0.076 13.0 0.0 4 7.5 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix Phage_integrase PF00589.22 gi|433591107|ref|YP_007280603.1| - 3.5e-12 46.5 0.0 3.1e-11 43.4 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|433591107|ref|YP_007280603.1| - 3.5e-06 27.2 0.0 7.9e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|433591107|ref|YP_007280603.1| - 0.00012 22.5 0.0 0.00023 21.6 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|433591107|ref|YP_007280603.1| - 0.00064 20.0 0.0 0.002 18.4 0.0 1.8 2 0 0 2 2 2 1 Phage integrase SAM-like domain Wax2_C PF12076.8 gi|433591107|ref|YP_007280603.1| - 0.11 12.2 0.1 0.23 11.1 0.1 1.5 1 1 0 1 1 1 0 WAX2 C-terminal domain CRAM_rpt PF07016.11 gi|433591107|ref|YP_007280603.1| - 0.6 10.0 2.2 2.8 7.9 0.8 2.5 2 0 0 2 2 2 0 Cysteine-rich acidic integral membrane protein precursor SAB PF04382.13 gi|433591110|ref|YP_007280606.1| - 0.03 14.4 0.0 0.038 14.1 0.0 1.2 1 0 0 1 1 1 0 SAB domain LapA_dom PF06305.11 gi|433591111|ref|YP_007280607.1| - 0.19 11.6 4.8 0.27 11.1 4.8 1.2 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain Phage_integrase PF00589.22 gi|433591113|ref|YP_007280609.1| - 3.2e-12 46.6 0.1 7.1e-10 38.9 0.0 2.2 2 0 0 2 2 2 2 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|433591113|ref|YP_007280609.1| - 1.3e-05 25.4 0.7 9.5e-05 22.6 0.0 2.8 3 1 1 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|433591113|ref|YP_007280609.1| - 8.6e-05 22.8 1.2 0.00072 19.8 0.1 2.9 4 0 0 4 4 4 1 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 gi|433591113|ref|YP_007280609.1| - 0.0024 18.3 1.7 0.024 15.1 0.1 3.3 3 1 1 4 4 4 1 Phage integrase, N-terminal SAM-like domain GerE PF00196.19 gi|433591113|ref|YP_007280609.1| - 0.017 14.7 0.0 0.048 13.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_40 PF14493.6 gi|433591113|ref|YP_007280609.1| - 0.052 14.0 0.5 0.16 12.5 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|433591113|ref|YP_007280609.1| - 0.066 13.0 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.6 gi|433591113|ref|YP_007280609.1| - 0.089 12.6 0.3 0.36 10.6 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain FAM193_C PF15914.5 gi|433591113|ref|YP_007280609.1| - 0.75 9.6 3.5 3.6 7.4 0.7 2.6 2 0 0 2 2 2 0 FAM193 family C-terminal DUF5640 PF18692.1 gi|433591114|ref|YP_007280610.1| - 0.13 12.3 0.0 0.39 10.8 0.0 1.9 2 1 0 2 2 2 0 Family of unknown function (DUF5640) DHO_dh PF01180.21 gi|433591114|ref|YP_007280610.1| - 0.17 11.1 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase HHH_5 PF14520.6 gi|433591116|ref|YP_007280612.1| - 3.8e-08 33.8 0.0 8.2e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|433591116|ref|YP_007280612.1| - 0.0047 17.1 0.0 0.014 15.6 0.0 1.9 1 1 0 1 1 1 1 Pathogenicity locus HHH PF00633.23 gi|433591116|ref|YP_007280612.1| - 0.019 14.8 0.0 0.075 12.9 0.0 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix motif DmpG_comm PF07836.11 gi|433591119|ref|YP_007280615.1| - 0.027 14.0 0.1 1.4 8.5 0.0 2.3 2 0 0 2 2 2 0 DmpG-like communication domain OCD_Mu_crystall PF02423.15 gi|433591120|ref|YP_007280616.1| - 1.4e-94 316.6 0.9 1.7e-94 316.3 0.9 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family DDE_Tnp_1 PF01609.21 gi|433591121|ref|YP_007280617.1| - 1.9e-29 102.9 0.2 2.4e-29 102.5 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain Corona_3 PF04694.12 gi|433591121|ref|YP_007280617.1| - 0.0056 17.0 0.0 0.018 15.3 0.0 1.8 1 0 0 1 1 1 1 Coronavirus ORF3 protein DDE_Tnp_1_4 PF13701.6 gi|433591121|ref|YP_007280617.1| - 0.087 11.1 0.0 0.12 10.6 0.0 1.3 1 0 0 1 1 1 0 Transposase DDE domain group 1 Aminotran_3 PF00202.21 gi|433591122|ref|YP_007280618.1| - 1.6e-89 300.4 0.0 1.8e-89 300.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|433591122|ref|YP_007280618.1| - 0.00028 20.3 0.0 0.00044 19.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SOR_SNZ PF01680.17 gi|433591123|ref|YP_007280619.1| - 7e-100 333.0 8.3 8.9e-100 332.7 8.3 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|433591123|ref|YP_007280619.1| - 1.5e-10 40.8 4.2 3.1e-06 26.7 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|433591123|ref|YP_007280619.1| - 0.0013 17.9 0.8 0.15 11.1 0.1 2.4 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|433591123|ref|YP_007280619.1| - 0.034 13.3 0.1 0.65 9.1 0.0 2.3 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase OMPdecase PF00215.24 gi|433591123|ref|YP_007280619.1| - 0.035 13.7 0.1 5 6.6 0.2 2.4 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family MttA_Hcf106 PF02416.16 gi|433591123|ref|YP_007280619.1| - 0.19 11.1 3.1 0.62 9.4 0.1 2.7 3 0 0 3 3 3 0 mttA/Hcf106 family Syndecan PF01034.20 gi|433591124|ref|YP_007280620.1| - 0.016 15.1 0.0 0.018 14.9 0.0 1.1 1 0 0 1 1 1 0 Syndecan domain Cas_csx3 PF09620.10 gi|433591124|ref|YP_007280620.1| - 0.15 12.0 0.1 0.17 11.8 0.1 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_csx3) SSF PF00474.17 gi|433591125|ref|YP_007280621.1| - 1.2e-65 222.0 30.2 1.6e-65 221.6 30.2 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family BCLP PF12304.8 gi|433591125|ref|YP_007280621.1| - 0.0025 17.4 0.5 0.0074 15.8 0.2 1.9 1 1 0 1 1 1 1 Beta-casein like protein Proton_antipo_N PF00662.20 gi|433591125|ref|YP_007280621.1| - 0.15 12.2 0.1 0.15 12.2 0.1 4.0 5 0 0 5 5 5 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CAAD PF14159.6 gi|433591125|ref|YP_007280621.1| - 1.5 8.7 16.6 0.62 9.9 3.0 3.9 3 0 0 3 3 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF4212 PF13937.6 gi|433591125|ref|YP_007280621.1| - 2.9 8.4 8.0 0.17 12.3 0.5 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4212) Aldedh PF00171.22 gi|433591127|ref|YP_007280623.1| - 1.4e-136 455.7 0.1 1.7e-136 455.5 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Aminotran_3 PF00202.21 gi|433591128|ref|YP_007280624.1| - 1e-96 324.1 0.0 1.3e-96 323.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|433591128|ref|YP_007280624.1| - 0.091 11.9 0.0 0.24 10.5 0.0 1.6 2 0 0 2 2 2 0 Aminotransferase class I and II AsnC_trans_reg PF01037.21 gi|433591129|ref|YP_007280625.1| - 3.9e-12 46.0 0.4 7.8e-12 45.0 0.4 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|433591129|ref|YP_007280625.1| - 1.2e-10 40.7 0.1 1.9e-10 40.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433591129|ref|YP_007280625.1| - 9.4e-09 35.0 0.4 1.7e-08 34.1 0.4 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|433591129|ref|YP_007280625.1| - 2.1e-06 27.7 0.1 5.2e-06 26.4 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|433591129|ref|YP_007280625.1| - 3.9e-06 26.7 0.1 8.2e-06 25.7 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|433591129|ref|YP_007280625.1| - 1.1e-05 25.2 0.0 2.2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.12 gi|433591129|ref|YP_007280625.1| - 0.00019 21.2 0.0 0.00056 19.7 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain HTH_WhiA PF02650.14 gi|433591129|ref|YP_007280625.1| - 0.00042 20.6 0.0 0.0014 18.9 0.0 1.8 2 0 0 2 2 2 1 WhiA C-terminal HTH domain NapD PF03927.13 gi|433591129|ref|YP_007280625.1| - 0.00046 20.2 0.3 0.00079 19.4 0.3 1.4 1 0 0 1 1 1 1 NapD protein HTH_27 PF13463.6 gi|433591129|ref|YP_007280625.1| - 0.00069 20.1 0.1 0.0014 19.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|433591129|ref|YP_007280625.1| - 0.0018 18.0 0.0 0.0039 16.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|433591129|ref|YP_007280625.1| - 0.0037 17.1 0.1 0.007 16.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|433591129|ref|YP_007280625.1| - 0.01 16.2 0.0 0.018 15.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|433591129|ref|YP_007280625.1| - 0.01 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.12 gi|433591129|ref|YP_007280625.1| - 0.02 15.1 0.0 0.032 14.4 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_DeoR PF08220.12 gi|433591129|ref|YP_007280625.1| - 0.023 14.5 0.1 0.041 13.6 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433591129|ref|YP_007280625.1| - 0.026 14.5 0.0 0.056 13.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain UPF0122 PF04297.14 gi|433591129|ref|YP_007280625.1| - 0.034 14.4 0.0 0.078 13.2 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_30 PF13556.6 gi|433591129|ref|YP_007280625.1| - 0.072 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GYD PF08734.11 gi|433591129|ref|YP_007280625.1| - 0.077 13.0 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 GYD domain Fe_dep_repress PF01325.19 gi|433591129|ref|YP_007280625.1| - 0.085 13.1 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_CI_repr PF07022.13 gi|433591129|ref|YP_007280625.1| - 0.14 12.3 0.0 0.26 11.4 0.0 1.7 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DUF5325 PF17259.2 gi|433591130|ref|YP_007280626.1| - 8.4 6.4 7.8 12 5.8 1.6 2.6 2 1 0 2 2 2 0 Family of unknown function (DUF5325) TBP PF00352.21 gi|433591131|ref|YP_007280627.1| - 2.9e-55 184.2 0.0 2.3e-27 94.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) T4bSS_IcmS PF12608.8 gi|433591131|ref|YP_007280627.1| - 1.8e-05 25.0 0.0 0.03 14.6 0.0 2.2 1 1 1 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment DUF3378 PF11858.8 gi|433591131|ref|YP_007280627.1| - 0.00035 20.6 0.0 1 9.5 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF218 PF02698.17 gi|433591131|ref|YP_007280627.1| - 0.067 13.2 0.0 7.8 6.5 0.0 2.1 1 1 1 2 2 2 0 DUF218 domain DUF192 PF02643.15 gi|433591131|ref|YP_007280627.1| - 0.16 12.1 0.0 1.3 9.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized ACR, COG1430 Rubredoxin_2 PF18073.1 gi|433591132|ref|YP_007280628.1| - 0.0078 15.9 2.2 0.017 14.8 2.2 1.6 1 0 0 1 1 1 1 Rubredoxin metal binding domain SWIM PF04434.17 gi|433591132|ref|YP_007280628.1| - 0.037 13.7 0.0 0.089 12.5 0.0 1.6 1 0 0 1 1 1 0 SWIM zinc finger Transglut_N PF00868.20 gi|433591133|ref|YP_007280629.1| - 0.17 12.3 0.0 0.24 11.8 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase family HyaE PF07449.11 gi|433591135|ref|YP_007280631.1| - 0.1 12.6 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE HalOD1 PF18545.1 gi|433591136|ref|YP_007280632.1| - 1.1e-05 25.6 0.1 1.5e-05 25.2 0.1 1.3 1 1 0 1 1 1 1 Halobacterial output domain 1 Peptidase_M78 PF06114.13 gi|433591137|ref|YP_007280633.1| - 6.3e-05 22.9 0.0 0.00021 21.2 0.0 1.8 2 0 0 2 2 2 1 IrrE N-terminal-like domain DUF2268 PF10026.9 gi|433591137|ref|YP_007280633.1| - 0.063 12.8 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 Predicted Zn-dependent protease (DUF2268) SprT-like PF10263.9 gi|433591137|ref|YP_007280633.1| - 0.089 12.7 0.1 0.34 10.8 0.0 1.9 2 0 0 2 2 2 0 SprT-like family Zincin_1 PF06262.11 gi|433591137|ref|YP_007280633.1| - 0.1 12.7 0.0 0.3 11.2 0.0 1.8 1 0 0 1 1 1 0 Zincin-like metallopeptidase Cdc6_C PF09079.11 gi|433591140|ref|YP_007280636.1| - 1.3e-21 76.4 0.1 8.2e-21 73.8 0.0 2.2 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|433591140|ref|YP_007280636.1| - 1.1e-11 45.4 5.1 5.3e-10 39.9 5.1 3.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|433591140|ref|YP_007280636.1| - 4.9e-10 39.8 0.0 1.1e-09 38.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|433591140|ref|YP_007280636.1| - 4.1e-05 23.6 0.0 7.1e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|433591140|ref|YP_007280636.1| - 5.5e-05 23.6 0.0 0.00017 22.0 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|433591140|ref|YP_007280636.1| - 0.00029 20.1 0.0 0.0078 15.4 0.0 2.1 1 1 0 1 1 1 1 NB-ARC domain DUF815 PF05673.13 gi|433591140|ref|YP_007280636.1| - 0.0003 20.0 0.0 0.00049 19.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|433591140|ref|YP_007280636.1| - 0.0012 18.8 0.0 0.0035 17.3 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|433591140|ref|YP_007280636.1| - 0.0014 19.0 0.0 0.0034 17.7 0.0 1.7 1 1 0 1 1 1 1 RNA helicase AAA_5 PF07728.14 gi|433591140|ref|YP_007280636.1| - 0.0034 17.4 0.0 0.023 14.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_32 PF13654.6 gi|433591140|ref|YP_007280636.1| - 0.0036 16.2 0.1 1.5 7.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|433591140|ref|YP_007280636.1| - 0.0059 16.4 0.0 0.019 14.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|433591140|ref|YP_007280636.1| - 0.01 15.5 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|433591140|ref|YP_007280636.1| - 0.023 14.0 0.0 0.16 11.2 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.6 gi|433591140|ref|YP_007280636.1| - 0.023 15.2 0.0 0.062 13.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|433591140|ref|YP_007280636.1| - 0.027 14.5 0.0 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|433591140|ref|YP_007280636.1| - 0.049 13.2 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TniB PF05621.11 gi|433591140|ref|YP_007280636.1| - 0.093 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial TniB protein KAP_NTPase PF07693.14 gi|433591140|ref|YP_007280636.1| - 0.13 11.5 0.0 1.3 8.2 0.0 1.6 1 1 0 2 2 2 0 KAP family P-loop domain AAA_23 PF13476.6 gi|433591143|ref|YP_007280639.1| - 3.9e-13 50.4 19.7 3.9e-13 50.4 19.7 4.1 1 1 1 3 3 2 1 AAA domain AAA_15 PF13175.6 gi|433591143|ref|YP_007280639.1| - 4e-05 23.5 1.9 4e-05 23.5 1.9 3.0 1 1 0 2 2 2 1 AAA ATPase domain MAD PF05557.13 gi|433591143|ref|YP_007280639.1| - 0.00042 18.8 69.3 0.017 13.5 32.8 3.0 2 1 1 3 3 3 3 Mitotic checkpoint protein AAA_13 PF13166.6 gi|433591143|ref|YP_007280639.1| - 0.00059 18.6 50.5 0.0012 17.6 17.6 2.4 1 1 0 2 2 2 2 AAA domain GAS PF13851.6 gi|433591143|ref|YP_007280639.1| - 0.0013 18.1 69.7 0.13 11.6 20.3 4.1 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.22 gi|433591143|ref|YP_007280639.1| - 0.0023 18.1 5.7 0.0023 18.1 5.7 4.9 2 2 2 4 4 4 1 Seryl-tRNA synthetase N-terminal domain Atg14 PF10186.9 gi|433591143|ref|YP_007280639.1| - 0.003 16.7 55.2 0.025 13.7 12.9 3.6 1 1 2 3 3 3 2 Vacuolar sorting 38 and autophagy-related subunit 14 Spc7 PF08317.11 gi|433591143|ref|YP_007280639.1| - 0.0054 15.7 18.2 0.0054 15.7 18.2 4.1 2 2 2 4 4 4 3 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|433591143|ref|YP_007280639.1| - 0.0078 16.6 3.0 0.0078 16.6 3.0 8.5 4 2 4 8 8 7 1 Flagella accessory protein C (FlaC) Tenui_NS3 PF05310.12 gi|433591143|ref|YP_007280639.1| - 0.048 13.8 0.0 0.091 12.9 0.0 1.4 1 0 0 1 1 1 0 Tenuivirus movement protein Baculo_PEP_C PF04513.12 gi|433591143|ref|YP_007280639.1| - 0.095 12.7 36.0 0.028 14.4 6.7 4.6 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus OmpH PF03938.14 gi|433591143|ref|YP_007280639.1| - 0.31 11.4 62.2 8.3 6.7 21.0 4.7 2 2 2 4 4 4 0 Outer membrane protein (OmpH-like) DUF4407 PF14362.6 gi|433591143|ref|YP_007280639.1| - 0.46 9.8 53.0 1.6 8.0 15.5 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) Exonuc_VII_L PF02601.15 gi|433591143|ref|YP_007280639.1| - 0.48 9.9 46.2 0.011 15.3 11.9 3.1 2 1 0 2 2 2 0 Exonuclease VII, large subunit DUF3450 PF11932.8 gi|433591143|ref|YP_007280639.1| - 0.5 9.6 67.4 3.8 6.7 9.4 4.3 2 2 2 4 4 4 0 Protein of unknown function (DUF3450) APG6_N PF17675.1 gi|433591143|ref|YP_007280639.1| - 0.52 10.8 92.1 6.2 7.4 24.1 5.6 2 2 3 5 5 5 0 Apg6 coiled-coil region SMC_N PF02463.19 gi|433591143|ref|YP_007280639.1| - 0.53 9.7 0.0 0.53 9.7 0.0 3.0 2 1 0 2 2 1 0 RecF/RecN/SMC N terminal domain NPV_P10 PF05531.12 gi|433591143|ref|YP_007280639.1| - 0.6 10.6 35.9 13 6.3 1.8 6.6 2 2 3 5 5 5 0 Nucleopolyhedrovirus P10 protein V_ATPase_I PF01496.19 gi|433591143|ref|YP_007280639.1| - 0.6 7.9 37.7 0.45 8.4 11.0 2.6 3 0 0 3 3 3 0 V-type ATPase 116kDa subunit family CALCOCO1 PF07888.11 gi|433591143|ref|YP_007280639.1| - 0.8 8.5 69.6 0.43 9.4 22.3 2.2 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Spectrin PF00435.21 gi|433591143|ref|YP_007280639.1| - 1.3 9.5 57.3 27 5.3 12.9 5.8 3 2 2 5 5 5 0 Spectrin repeat Sec8_exocyst PF04048.14 gi|433591143|ref|YP_007280639.1| - 2.4 8.0 28.8 0.3 11.0 2.3 4.7 2 2 2 4 4 4 0 Sec8 exocyst complex component specific domain CENP-F_leu_zip PF10473.9 gi|433591143|ref|YP_007280639.1| - 4.7 7.2 83.1 2.8 7.9 9.5 4.8 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HBM PF16591.5 gi|433591143|ref|YP_007280639.1| - 5.5 6.3 42.4 3.1 7.2 10.6 3.7 2 1 1 3 3 3 0 Helical bimodular sensor domain Mce4_CUP1 PF11887.8 gi|433591143|ref|YP_007280639.1| - 7.3 6.0 10.2 4.3 6.7 1.8 3.1 3 0 0 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Fez1 PF06818.15 gi|433591143|ref|YP_007280639.1| - 7.8 6.9 68.1 0.2 12.1 18.2 3.6 1 1 2 4 4 4 0 Fez1 Syntaxin-6_N PF09177.11 gi|433591143|ref|YP_007280639.1| - 9 6.9 62.9 18 6.0 11.3 7.0 2 1 4 7 7 7 0 Syntaxin 6, N-terminal TrkA_N PF02254.18 gi|433591144|ref|YP_007280640.1| - 2.8e-24 85.6 1.2 2.8e-24 85.6 1.2 1.7 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|433591144|ref|YP_007280640.1| - 1.6e-14 53.5 0.2 3.3e-14 52.5 0.2 1.6 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_10 PF13460.6 gi|433591144|ref|YP_007280640.1| - 9.4e-07 28.9 0.3 1.7e-06 28.0 0.2 1.5 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_7 PF13241.6 gi|433591144|ref|YP_007280640.1| - 6.4e-06 26.6 0.1 1.1e-05 25.8 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|433591144|ref|YP_007280640.1| - 0.00014 22.1 0.2 0.00025 21.3 0.2 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|433591144|ref|YP_007280640.1| - 0.00017 22.1 0.2 0.00058 20.4 0.1 1.9 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.13 gi|433591144|ref|YP_007280640.1| - 0.00035 20.2 0.1 0.00056 19.5 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family XdhC_C PF13478.6 gi|433591144|ref|YP_007280640.1| - 0.0016 19.0 0.1 0.0027 18.2 0.1 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain ADH_zinc_N PF00107.26 gi|433591144|ref|YP_007280640.1| - 0.0061 16.6 0.0 0.2 11.7 0.0 2.1 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|433591144|ref|YP_007280640.1| - 0.008 16.2 0.1 0.013 15.6 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DapB_N PF01113.20 gi|433591144|ref|YP_007280640.1| - 0.012 15.7 0.1 0.022 14.9 0.1 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus 3HCDH_N PF02737.18 gi|433591144|ref|YP_007280640.1| - 0.013 15.4 0.1 0.022 14.7 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|433591144|ref|YP_007280640.1| - 0.014 14.7 0.2 0.022 14.0 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|433591144|ref|YP_007280640.1| - 0.014 14.7 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Potass_KdpF PF09604.10 gi|433591145|ref|YP_007280641.1| - 8.7e-08 32.0 1.2 9.8e-08 31.8 1.2 1.1 1 0 0 1 1 1 1 F subunit of K+-transporting ATPase (Potass_KdpF) KdpA PF03814.15 gi|433591146|ref|YP_007280642.1| - 6.1e-193 641.9 27.8 6.9e-193 641.8 27.8 1.0 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit Ni_hydr_CYTB PF01292.20 gi|433591146|ref|YP_007280642.1| - 2.3 7.8 19.1 0.35 10.4 4.9 3.8 2 2 1 3 3 3 0 Prokaryotic cytochrome b561 E1-E2_ATPase PF00122.20 gi|433591147|ref|YP_007280643.1| - 1.5e-32 112.5 1.8 1.5e-32 112.5 1.8 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433591147|ref|YP_007280643.1| - 1.2e-27 97.6 2.7 2.9e-27 96.3 2.7 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|433591147|ref|YP_007280643.1| - 3e-05 23.9 1.6 0.019 14.7 1.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433591147|ref|YP_007280643.1| - 0.11 12.9 0.0 0.29 11.5 0.0 1.7 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase KdpC PF02669.15 gi|433591148|ref|YP_007280644.1| - 3.5e-56 189.9 0.0 4.2e-56 189.7 0.0 1.1 1 0 0 1 1 1 1 K+-transporting ATPase, c chain Usp PF00582.26 gi|433591149|ref|YP_007280645.1| - 8.6e-16 58.7 0.0 1.5e-09 38.5 0.0 3.0 2 1 0 2 2 2 2 Universal stress protein family Sulf_coat_C PF12193.8 gi|433591150|ref|YP_007280646.1| - 0.06 13.4 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 Sulfolobus virus coat protein C terminal Bac_export_2 PF01312.19 gi|433591150|ref|YP_007280646.1| - 0.08 12.1 0.1 0.11 11.6 0.1 1.2 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family Asp-Al_Ex PF06826.12 gi|433591150|ref|YP_007280646.1| - 0.33 10.8 9.9 0.079 12.8 3.7 2.0 1 1 1 2 2 2 0 Predicted Permease Membrane Region DUF202 PF02656.15 gi|433591151|ref|YP_007280647.1| - 0.77 10.2 13.7 2.8 8.4 9.0 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF202) YiaAB PF05360.14 gi|433591151|ref|YP_007280647.1| - 4.1 7.7 16.6 0.46 10.8 3.8 3.1 2 2 1 3 3 3 0 yiaA/B two helix domain HTH_24 PF13412.6 gi|433591152|ref|YP_007280648.1| - 2.7e-08 33.2 0.1 3.8e-08 32.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433591152|ref|YP_007280648.1| - 3e-08 33.4 0.5 4.7e-08 32.7 0.5 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|433591152|ref|YP_007280648.1| - 3e-05 24.0 0.0 4.2e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|433591152|ref|YP_007280648.1| - 0.0059 16.5 0.0 0.0087 16.0 0.0 1.2 1 0 0 1 1 1 1 HTH domain HrcA_DNA-bdg PF03444.15 gi|433591152|ref|YP_007280648.1| - 0.018 14.7 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR_2 PF12802.7 gi|433591152|ref|YP_007280648.1| - 0.022 14.6 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|433591152|ref|YP_007280648.1| - 0.028 14.8 0.0 0.043 14.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 gi|433591152|ref|YP_007280648.1| - 0.033 13.9 0.1 0.051 13.3 0.1 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|433591152|ref|YP_007280648.1| - 0.08 13.4 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Put_DNA-bind_N PF06971.13 gi|433591152|ref|YP_007280648.1| - 0.17 12.0 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus TrmB PF01978.19 gi|433591152|ref|YP_007280648.1| - 0.21 11.5 0.0 0.27 11.2 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DHHA1 PF02272.19 gi|433591153|ref|YP_007280649.1| - 4.7e-13 49.7 0.0 7.2e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|433591153|ref|YP_007280649.1| - 4.9e-13 49.2 0.2 8.4e-13 48.4 0.2 1.4 1 0 0 1 1 1 1 DHH family Usp PF00582.26 gi|433591154|ref|YP_007280650.1| - 1e-06 29.3 0.8 5.9e-06 26.8 0.3 2.4 2 1 0 2 2 2 1 Universal stress protein family MFS_1 PF07690.16 gi|433591155|ref|YP_007280651.1| - 8.7e-36 123.6 37.8 1.2e-35 123.1 37.8 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|433591155|ref|YP_007280651.1| - 1.1e-06 27.8 16.6 3.4e-05 22.9 7.3 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|433591155|ref|YP_007280651.1| - 5.1e-05 22.3 14.4 0.017 14.0 7.0 2.7 1 1 1 2 2 2 2 MFS_1 like family UNC-93 PF05978.16 gi|433591155|ref|YP_007280651.1| - 0.0011 18.7 1.6 0.0024 17.6 1.6 1.6 1 0 0 1 1 1 1 Ion channel regulatory protein UNC-93 BAT PF15915.5 gi|433591156|ref|YP_007280652.1| - 2.6e-39 134.6 6.4 2.6e-39 134.6 6.4 2.9 3 1 0 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|433591156|ref|YP_007280652.1| - 3.6e-25 88.9 6.4 7.5e-16 58.7 0.2 2.7 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|433591156|ref|YP_007280652.1| - 2.1e-17 62.6 0.0 5.8e-17 61.2 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.10 gi|433591156|ref|YP_007280652.1| - 2.3e-17 63.2 2.5 1.3e-11 44.7 0.3 3.3 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.24 gi|433591156|ref|YP_007280652.1| - 8.1e-12 45.3 0.0 2.4e-11 43.8 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.6 gi|433591156|ref|YP_007280652.1| - 1.4e-11 44.9 1.5 1.6e-07 31.7 0.1 2.7 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.7 gi|433591156|ref|YP_007280652.1| - 1.1e-09 38.5 1.2 1e-05 25.7 0.0 3.1 2 0 0 2 2 2 2 PAS domain GAF PF01590.26 gi|433591156|ref|YP_007280652.1| - 6e-08 33.4 0.3 0.0045 17.6 0.0 2.8 2 0 0 2 2 2 2 GAF domain PAS PF00989.25 gi|433591156|ref|YP_007280652.1| - 3.6e-05 23.7 3.5 0.51 10.4 0.0 4.3 4 1 0 4 4 4 2 PAS fold Sigma70_r4 PF04545.16 gi|433591156|ref|YP_007280652.1| - 0.0068 15.9 0.1 0.054 13.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 PAS_8 PF13188.7 gi|433591156|ref|YP_007280652.1| - 0.038 14.0 1.1 2.1 8.5 0.1 3.4 3 0 0 3 3 3 0 PAS domain PAS_7 PF12860.7 gi|433591156|ref|YP_007280652.1| - 0.057 13.6 3.0 1.1 9.4 0.1 3.4 3 1 0 3 3 3 0 PAS fold TNF PF00229.18 gi|433591156|ref|YP_007280652.1| - 0.067 13.1 0.1 0.4 10.6 0.0 2.2 2 1 0 2 2 2 0 TNF(Tumour Necrosis Factor) family HTH_22 PF13309.6 gi|433591156|ref|YP_007280652.1| - 0.092 12.8 0.0 0.29 11.2 0.0 1.9 1 0 0 1 1 1 0 HTH domain zf-C2HC5 PF06221.13 gi|433591157|ref|YP_007280653.1| - 0.00018 21.5 0.3 0.0002 21.3 0.3 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DZR PF12773.7 gi|433591157|ref|YP_007280653.1| - 0.00057 19.9 0.6 0.00064 19.7 0.6 1.1 1 0 0 1 1 1 1 Double zinc ribbon DUF1272 PF06906.11 gi|433591157|ref|YP_007280653.1| - 0.0084 16.2 0.7 0.0099 16.0 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.10 gi|433591157|ref|YP_007280653.1| - 0.009 16.1 4.5 0.026 14.6 4.4 1.8 1 1 0 1 1 1 1 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|433591157|ref|YP_007280653.1| - 0.0099 15.8 0.9 0.012 15.6 0.9 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 YhfH PF14149.6 gi|433591157|ref|YP_007280653.1| - 0.021 14.8 2.7 2.5 8.1 0.1 2.1 1 1 1 2 2 2 0 YhfH-like protein zf-ribbon_3 PF13248.6 gi|433591157|ref|YP_007280653.1| - 0.025 14.0 3.7 0.14 11.6 3.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|433591157|ref|YP_007280653.1| - 0.029 14.3 1.4 1.5 8.8 0.2 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-C4_Topoisom PF01396.19 gi|433591157|ref|YP_007280653.1| - 0.036 13.8 2.0 0.076 12.8 0.4 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger HypA PF01155.19 gi|433591157|ref|YP_007280653.1| - 0.077 13.0 0.5 0.087 12.9 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 gi|433591157|ref|YP_007280653.1| - 0.32 11.1 5.5 39 4.4 5.5 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Desulfoferrod_N PF06397.12 gi|433591157|ref|YP_007280653.1| - 0.34 10.6 3.9 0.76 9.4 3.9 1.6 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Ogr_Delta PF04606.12 gi|433591157|ref|YP_007280653.1| - 0.34 10.9 3.5 0.41 10.6 1.1 1.9 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Rubredoxin_2 PF18073.1 gi|433591157|ref|YP_007280653.1| - 1.7 8.4 8.2 18 5.1 8.2 2.0 1 1 0 1 1 1 0 Rubredoxin metal binding domain ELFV_dehydrog PF00208.21 gi|433591158|ref|YP_007280654.1| - 7.2e-72 242.0 0.9 1e-71 241.5 0.9 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|433591158|ref|YP_007280654.1| - 2.4e-56 189.2 0.0 4.2e-56 188.4 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|433591158|ref|YP_007280654.1| - 0.00025 20.5 0.0 0.00044 19.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.19 gi|433591158|ref|YP_007280654.1| - 0.081 11.6 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase AdoHcyase_NAD PF00670.21 gi|433591158|ref|YP_007280654.1| - 0.09 12.8 0.1 0.2 11.7 0.1 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|433591158|ref|YP_007280654.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|433591158|ref|YP_007280654.1| - 0.15 12.5 0.0 0.33 11.4 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding ChaB PF06150.12 gi|433591158|ref|YP_007280654.1| - 0.98 10.0 2.9 0.86 10.2 0.7 2.1 2 0 0 2 2 2 0 ChaB PAS_3 PF08447.12 gi|433591161|ref|YP_007280657.1| - 3.1e-41 139.6 0.8 9.8e-16 57.8 0.3 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|433591161|ref|YP_007280657.1| - 5.7e-21 74.7 0.8 2.6e-06 27.6 0.0 4.9 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.10 gi|433591161|ref|YP_007280657.1| - 1.5e-18 67.0 16.2 1.7e-05 25.0 0.5 4.4 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|433591161|ref|YP_007280657.1| - 2e-18 66.9 0.0 1.6e-17 64.0 0.0 2.5 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|433591161|ref|YP_007280657.1| - 2.1e-18 66.3 0.9 7.3e-06 26.0 0.0 4.6 4 0 0 4 4 4 3 PAS fold Response_reg PF00072.24 gi|433591161|ref|YP_007280657.1| - 2e-17 63.4 0.3 6.1e-16 58.6 0.0 3.0 3 0 0 3 3 3 1 Response regulator receiver domain PAS_7 PF12860.7 gi|433591161|ref|YP_007280657.1| - 3.3e-11 43.4 7.1 3.3e-08 33.7 0.1 4.6 4 1 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|433591161|ref|YP_007280657.1| - 2.5e-09 36.9 1.1 0.0014 18.6 0.0 4.3 4 0 0 4 4 4 2 PAS domain HATPase_c_2 PF13581.6 gi|433591161|ref|YP_007280657.1| - 2.8e-07 30.5 0.4 9.3e-07 28.8 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|433591161|ref|YP_007280657.1| - 5.2e-07 29.5 0.0 6.2e-06 26.1 0.0 2.3 2 0 0 2 2 2 1 GHKL domain HisKA PF00512.25 gi|433591161|ref|YP_007280657.1| - 7.4e-05 22.7 0.2 0.00036 20.5 0.2 2.3 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.6 gi|433591161|ref|YP_007280657.1| - 0.0019 18.3 0.0 21 5.3 0.0 3.4 3 0 0 3 3 3 0 PAS domain HisKA_4TM PF16926.5 gi|433591161|ref|YP_007280657.1| - 0.016 14.8 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase DNA_pol_A_exo1 PF01612.20 gi|433591161|ref|YP_007280657.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 3'-5' exonuclease IclR PF01614.18 gi|433591162|ref|YP_007280658.1| - 1.9e-33 115.0 0.0 3.7e-33 114.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|433591162|ref|YP_007280658.1| - 6.6e-16 57.8 0.0 6.3e-15 54.7 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433591162|ref|YP_007280658.1| - 7.5e-08 31.8 0.0 2e-07 30.4 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433591162|ref|YP_007280658.1| - 1.1e-06 28.4 0.0 5.2e-06 26.2 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433591162|ref|YP_007280658.1| - 1.2e-06 28.3 0.0 4.4e-06 26.5 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|433591162|ref|YP_007280658.1| - 5.2e-06 26.4 0.1 1.5e-05 25.0 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|433591162|ref|YP_007280658.1| - 6.1e-06 26.0 0.5 1.3e-05 24.9 0.1 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|433591162|ref|YP_007280658.1| - 5.3e-05 22.9 0.4 0.0013 18.5 0.0 2.9 3 0 0 3 3 3 1 Homeodomain-like domain DUF742 PF05331.11 gi|433591162|ref|YP_007280658.1| - 0.00028 20.7 0.0 0.00051 19.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF742) MarR PF01047.22 gi|433591162|ref|YP_007280658.1| - 0.0003 20.7 0.0 0.00072 19.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|433591162|ref|YP_007280658.1| - 0.00044 20.1 0.0 0.0015 18.4 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_45 PF14947.6 gi|433591162|ref|YP_007280658.1| - 0.00082 19.3 0.0 0.0017 18.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_40 PF14493.6 gi|433591162|ref|YP_007280658.1| - 0.0052 17.2 0.3 0.021 15.3 0.0 2.1 3 0 0 3 3 2 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|433591162|ref|YP_007280658.1| - 0.0066 16.8 0.0 0.029 14.7 0.0 2.0 2 1 0 2 2 2 1 Transcriptional regulator HTH_27 PF13463.6 gi|433591162|ref|YP_007280658.1| - 0.007 16.8 0.5 0.068 13.7 0.0 2.5 3 0 0 3 3 3 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|433591162|ref|YP_007280658.1| - 0.0083 16.3 0.1 0.034 14.3 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.11 gi|433591162|ref|YP_007280658.1| - 0.037 14.7 0.0 0.084 13.5 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal Sigma70_r4_2 PF08281.12 gi|433591162|ref|YP_007280658.1| - 0.037 13.7 0.0 0.47 10.2 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_9 PF08221.11 gi|433591162|ref|YP_007280658.1| - 0.042 14.0 0.0 0.081 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433591162|ref|YP_007280658.1| - 0.047 13.7 0.1 3.5 7.7 0.0 2.9 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|433591162|ref|YP_007280658.1| - 0.07 13.1 0.0 0.16 11.9 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain Sigma70_r3 PF04539.16 gi|433591162|ref|YP_007280658.1| - 0.088 12.9 0.0 0.25 11.5 0.0 1.8 1 0 0 1 1 1 0 Sigma-70 region 3 Terminase_5 PF06056.12 gi|433591162|ref|YP_007280658.1| - 0.14 12.1 0.0 0.65 9.9 0.0 2.1 3 0 0 3 3 2 0 Putative ATPase subunit of terminase (gpP-like) ECH_1 PF00378.20 gi|433591163|ref|YP_007280659.1| - 5.4e-44 150.4 0.0 6e-44 150.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|433591163|ref|YP_007280659.1| - 2.2e-24 86.6 0.0 2.6e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase CoA_trans PF01144.23 gi|433591164|ref|YP_007280660.1| - 3.9e-40 137.5 7.2 9.1e-37 126.6 0.7 2.9 2 1 0 2 2 2 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|433591164|ref|YP_007280660.1| - 7.3e-06 24.6 0.5 1.2e-05 23.9 0.5 1.2 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter AcetylCoA_hydro PF02550.15 gi|433591164|ref|YP_007280660.1| - 0.0023 18.0 0.0 1.4 8.8 0.0 2.6 3 0 0 3 3 3 2 Acetyl-CoA hydrolase/transferase N-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|433591165|ref|YP_007280661.1| - 3.5e-52 176.6 1.4 5e-52 176.1 1.4 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|433591165|ref|YP_007280661.1| - 1.3e-33 116.1 0.0 2.6e-33 115.1 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433591165|ref|YP_007280661.1| - 2.9e-26 91.5 0.0 6.9e-26 90.3 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|433591165|ref|YP_007280661.1| - 5.5e-26 91.4 4.9 1.6e-25 89.9 4.8 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|433591165|ref|YP_007280661.1| - 0.0056 16.4 0.1 0.03 14.0 0.0 2.1 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal DDE_3 PF13358.6 gi|433591166|ref|YP_007280662.1| - 1.6e-14 53.9 0.0 1.5e-13 50.8 0.0 2.1 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|433591166|ref|YP_007280662.1| - 2.3e-11 44.1 0.3 9.4e-11 42.2 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|433591166|ref|YP_007280662.1| - 4.4e-10 39.4 0.0 1.4e-09 37.9 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433591166|ref|YP_007280662.1| - 6.7e-09 35.3 0.0 1.5e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|433591166|ref|YP_007280662.1| - 1.2e-05 24.8 0.0 8.6e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|433591166|ref|YP_007280662.1| - 2.7e-05 24.2 0.0 6.8e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|433591166|ref|YP_007280662.1| - 0.0018 18.3 0.1 0.0041 17.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|433591166|ref|YP_007280662.1| - 0.0023 17.4 0.0 0.0074 15.8 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 DDE_1 PF03184.19 gi|433591166|ref|YP_007280662.1| - 0.0027 17.4 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF746 PF05344.11 gi|433591166|ref|YP_007280662.1| - 0.016 15.1 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.6 gi|433591166|ref|YP_007280662.1| - 0.041 14.4 0.0 0.091 13.3 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.12 gi|433591166|ref|YP_007280662.1| - 0.058 13.1 0.1 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 rve PF00665.26 gi|433591166|ref|YP_007280662.1| - 0.064 13.5 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain 3HCDH_N PF02737.18 gi|433591167|ref|YP_007280663.1| - 2.4e-63 213.3 0.3 2.9e-63 213.0 0.3 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|433591167|ref|YP_007280663.1| - 4.7e-35 120.1 0.5 1.3e-32 112.2 0.0 2.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|433591167|ref|YP_007280663.1| - 0.00023 21.3 1.8 0.00053 20.2 1.6 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|433591167|ref|YP_007280663.1| - 0.0033 18.0 1.0 0.028 15.0 0.8 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|433591167|ref|YP_007280663.1| - 0.014 14.7 0.8 0.025 13.9 0.6 1.4 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|433591167|ref|YP_007280663.1| - 0.035 13.7 0.8 0.063 12.8 0.8 1.4 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|433591167|ref|YP_007280663.1| - 0.035 13.3 0.2 0.071 12.3 0.2 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 gi|433591167|ref|YP_007280663.1| - 0.037 13.6 3.2 0.086 12.4 3.1 1.7 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase NAD_Gly3P_dh_N PF01210.23 gi|433591167|ref|YP_007280663.1| - 0.053 13.5 0.3 0.11 12.5 0.3 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 gi|433591167|ref|YP_007280663.1| - 0.085 13.4 0.4 0.16 12.5 0.4 1.5 1 1 0 1 1 1 0 XdhC Rossmann domain Thiolase_N PF00108.23 gi|433591168|ref|YP_007280664.1| - 5e-30 104.7 0.9 2.4e-28 99.2 0.9 2.3 1 1 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|433591168|ref|YP_007280664.1| - 9.1e-12 45.1 7.6 5.5e-11 42.5 1.6 3.3 4 1 1 5 5 5 2 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|433591168|ref|YP_007280664.1| - 1.5e-08 34.3 0.3 5.1e-08 32.6 0.3 1.9 1 0 0 1 1 1 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|433591168|ref|YP_007280664.1| - 0.0037 17.3 2.6 0.43 10.6 2.6 3.5 2 1 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|433591169|ref|YP_007280665.1| - 1.2e-12 47.7 3.5 1.6e-12 47.3 3.5 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|433591169|ref|YP_007280665.1| - 9.9e-07 28.5 1.5 1.4e-06 28.0 1.5 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|433591169|ref|YP_007280665.1| - 0.049 13.2 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding AMP-binding PF00501.28 gi|433591170|ref|YP_007280666.1| - 6e-78 262.3 0.0 7.1e-78 262.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433591170|ref|YP_007280666.1| - 1.5e-22 80.3 0.2 3.3e-22 79.3 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MM_CoA_mutase PF01642.22 gi|433591171|ref|YP_007280667.1| - 4.5e-215 715.0 0.1 5.2e-215 714.9 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase B12-binding PF02310.19 gi|433591172|ref|YP_007280668.1| - 6.5e-23 81.1 0.7 7.3e-23 80.9 0.7 1.0 1 0 0 1 1 1 1 B12 binding domain DUF1611_N PF17396.2 gi|433591172|ref|YP_007280668.1| - 0.041 14.1 0.1 0.71 10.1 0.0 2.5 1 1 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain Staph_haemo PF05480.11 gi|433591172|ref|YP_007280668.1| - 0.048 13.4 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 Staphylococcus haemolytic protein Peptidase_S8 PF00082.22 gi|433591174|ref|YP_007280670.1| - 1.8e-39 135.8 0.7 3.4e-39 134.9 0.7 1.4 1 0 0 1 1 1 1 Subtilase family PMSR PF01625.21 gi|433591175|ref|YP_007280671.1| - 2.1e-32 112.4 0.2 3e-32 111.9 0.2 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF1810 PF08837.11 gi|433591176|ref|YP_007280672.1| - 5.4e-59 197.9 0.0 6e-59 197.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1810) NTP_transf_2 PF01909.23 gi|433591177|ref|YP_007280673.1| - 9.8e-11 41.8 0.1 1.5e-10 41.2 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|433591177|ref|YP_007280673.1| - 4.3e-07 29.9 0.0 7.5e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MarR_2 PF12802.7 gi|433591177|ref|YP_007280673.1| - 0.00052 19.8 0.1 0.0031 17.4 0.0 2.1 2 0 0 2 2 2 1 MarR family RP-C PF03428.13 gi|433591177|ref|YP_007280673.1| - 0.011 15.4 0.1 0.022 14.4 0.1 1.5 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_IclR PF09339.10 gi|433591177|ref|YP_007280673.1| - 0.025 14.4 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433591177|ref|YP_007280673.1| - 0.034 14.1 0.2 0.45 10.5 0.1 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Pilin_N PF07790.11 gi|433591180|ref|YP_007280676.1| - 1.2e-14 55.0 5.8 1.2e-14 55.0 5.8 2.0 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal DDE_Tnp_IS66 PF03050.14 gi|433591181|ref|YP_007280677.1| - 6.2e-49 167.0 0.2 6.2e-49 167.0 0.2 1.7 2 0 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.7 gi|433591181|ref|YP_007280677.1| - 1.7e-05 25.1 4.6 5.1e-05 23.6 4.6 1.9 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 bZIP_1 PF00170.21 gi|433591181|ref|YP_007280677.1| - 0.00031 20.8 6.0 0.0006 19.9 6.0 1.5 1 0 0 1 1 1 1 bZIP transcription factor GAS PF13851.6 gi|433591181|ref|YP_007280677.1| - 0.00065 19.1 5.1 0.0013 18.2 5.1 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.7 gi|433591181|ref|YP_007280677.1| - 0.0024 18.0 3.9 0.0053 16.9 3.9 1.5 1 0 0 1 1 1 1 Tropomyosin like Csm1_N PF18504.1 gi|433591181|ref|YP_007280677.1| - 0.003 17.9 2.6 0.0082 16.5 2.6 1.8 1 0 0 1 1 1 1 Csm1 N-terminal domain MCC-bdg_PDZ PF10506.9 gi|433591181|ref|YP_007280677.1| - 0.008 16.2 3.9 0.019 15.0 3.9 1.7 1 0 0 1 1 1 1 PDZ domain of MCC-2 bdg protein for Usher syndrome CENP-F_leu_zip PF10473.9 gi|433591181|ref|YP_007280677.1| - 0.013 15.5 8.3 0.031 14.3 8.3 1.6 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Taxilin PF09728.9 gi|433591181|ref|YP_007280677.1| - 0.03 13.5 4.9 0.048 12.8 4.9 1.2 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Ead_Ea22 PF13935.6 gi|433591181|ref|YP_007280677.1| - 0.042 14.5 1.9 0.083 13.5 0.2 2.4 2 0 0 2 2 2 0 Ead/Ea22-like protein Shugoshin_N PF07558.11 gi|433591181|ref|YP_007280677.1| - 0.064 13.1 2.9 0.13 12.1 2.9 1.5 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Spc24 PF08286.11 gi|433591181|ref|YP_007280677.1| - 0.08 13.2 2.2 0.19 12.0 2.0 1.7 2 0 0 2 2 1 0 Spc24 subunit of Ndc80 DDE_Tnp_IS240 PF13610.6 gi|433591181|ref|YP_007280677.1| - 0.092 13.0 1.3 0.14 12.4 0.0 2.0 2 1 0 2 2 1 0 DDE domain CCDC106 PF15794.5 gi|433591181|ref|YP_007280677.1| - 0.1 12.3 2.7 0.19 11.4 2.7 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 106 YabA PF06156.13 gi|433591181|ref|YP_007280677.1| - 0.14 12.8 1.4 0.37 11.4 1.4 1.7 1 0 0 1 1 1 0 Initiation control protein YabA TMF_DNA_bd PF12329.8 gi|433591181|ref|YP_007280677.1| - 0.15 12.0 7.1 0.36 10.9 7.1 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding APC_N_CC PF16689.5 gi|433591181|ref|YP_007280677.1| - 0.18 11.9 7.5 0.52 10.4 7.5 1.8 1 0 0 1 1 1 0 Coiled-coil N-terminus of APC, dimerisation domain DUF4472 PF14739.6 gi|433591181|ref|YP_007280677.1| - 0.18 12.6 6.5 0.099 13.4 2.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4472) FTA4 PF13093.6 gi|433591181|ref|YP_007280677.1| - 0.19 11.6 3.9 1.9 8.3 1.0 2.5 2 1 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 bZIP_2 PF07716.15 gi|433591181|ref|YP_007280677.1| - 0.22 11.6 8.5 0.32 11.1 7.2 2.0 1 1 0 1 1 1 0 Basic region leucine zipper MPS2 PF17060.5 gi|433591181|ref|YP_007280677.1| - 0.26 10.5 4.6 0.48 9.6 4.6 1.3 1 0 0 1 1 1 0 Monopolar spindle protein 2 zf-FPG_IleRS PF06827.14 gi|433591181|ref|YP_007280677.1| - 0.3 11.0 4.4 11 6.0 0.2 3.2 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS JIP_LZII PF16471.5 gi|433591181|ref|YP_007280677.1| - 0.4 10.9 8.7 1.1 9.5 8.7 1.7 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II NYD-SP28_assoc PF14775.6 gi|433591181|ref|YP_007280677.1| - 0.48 10.6 5.4 2 8.6 5.4 2.1 1 0 0 1 1 1 0 Sperm tail C-terminal domain TolA_bind_tri PF16331.5 gi|433591181|ref|YP_007280677.1| - 0.91 9.7 11.4 0.84 9.8 9.0 2.1 2 0 0 2 2 2 0 TolA binding protein trimerisation AAA_13 PF13166.6 gi|433591181|ref|YP_007280677.1| - 1 8.0 2.4 1.5 7.4 2.4 1.2 1 0 0 1 1 1 0 AAA domain TMF_TATA_bd PF12325.8 gi|433591181|ref|YP_007280677.1| - 1.1 9.5 13.3 0.28 11.4 9.7 1.8 2 0 0 2 2 1 0 TATA element modulatory factor 1 TATA binding TSC22 PF01166.18 gi|433591181|ref|YP_007280677.1| - 1.1 9.6 8.3 3.5 8.0 5.3 3.0 2 1 1 3 3 2 0 TSC-22/dip/bun family Spc7 PF08317.11 gi|433591181|ref|YP_007280677.1| - 1.6 7.5 7.5 0.38 9.6 2.2 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF4407 PF14362.6 gi|433591181|ref|YP_007280677.1| - 1.8 7.8 4.7 0.44 9.9 0.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) ATG16 PF08614.11 gi|433591181|ref|YP_007280677.1| - 3.5 7.8 14.1 0.044 14.0 5.5 2.1 3 0 0 3 3 2 0 Autophagy protein 16 (ATG16) betaPIX_CC PF16523.5 gi|433591181|ref|YP_007280677.1| - 3.9 7.4 8.9 3.4 7.6 3.9 2.3 2 0 0 2 2 2 0 betaPIX coiled coil ZapB PF06005.12 gi|433591181|ref|YP_007280677.1| - 4.4 7.8 13.3 2 8.9 9.0 2.4 2 0 0 2 2 2 0 Cell division protein ZapB PKcGMP_CC PF16808.5 gi|433591181|ref|YP_007280677.1| - 8 6.4 14.7 0.79 9.6 4.4 2.8 1 1 1 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase PHO4 PF01384.20 gi|433591184|ref|YP_007280680.1| - 3.3e-41 141.4 20.2 5.4e-41 140.7 20.2 1.3 1 0 0 1 1 1 1 Phosphate transporter family EamA PF00892.20 gi|433591185|ref|YP_007280681.1| - 3.4e-35 121.2 42.0 1.1e-20 74.2 19.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|433591185|ref|YP_007280681.1| - 0.0013 18.8 1.7 0.0013 18.8 1.7 2.3 2 0 0 2 2 2 1 Putative transmembrane family 234 NmrA PF05368.13 gi|433591186|ref|YP_007280682.1| - 7.5e-20 71.5 0.0 9.9e-20 71.1 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 gi|433591186|ref|YP_007280682.1| - 1.5e-16 60.9 1.3 2.6e-16 60.0 1.3 1.5 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|433591186|ref|YP_007280682.1| - 2.3e-05 24.0 0.1 0.00036 20.1 0.1 2.1 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|433591186|ref|YP_007280682.1| - 0.048 12.8 0.2 0.078 12.1 0.2 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|433591186|ref|YP_007280682.1| - 0.074 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase DapB_N PF01113.20 gi|433591186|ref|YP_007280682.1| - 0.11 12.6 0.6 0.36 11.0 0.6 1.9 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NikR_C PF08753.11 gi|433591187|ref|YP_007280683.1| - 3.6e-16 59.1 2.7 3.6e-16 59.1 2.7 1.7 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|433591187|ref|YP_007280683.1| - 0.01 15.7 0.1 0.021 14.7 0.1 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family NicO PF03824.16 gi|433591188|ref|YP_007280684.1| - 1.7e-05 24.4 3.7 5.7e-05 22.6 4.2 1.7 1 1 1 2 2 2 1 High-affinity nickel-transport protein DUF2274 PF10038.9 gi|433591189|ref|YP_007280685.1| - 0.25 11.8 2.3 5.1 7.6 0.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2274) DUF2892 PF11127.8 gi|433591190|ref|YP_007280686.1| - 1.7e-14 53.6 5.7 1.1e-13 51.0 5.7 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2892) DUF1772 PF08592.11 gi|433591190|ref|YP_007280686.1| - 0.0031 17.8 0.1 0.0038 17.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1772) SseC PF04888.12 gi|433591190|ref|YP_007280686.1| - 1.7 8.2 7.1 2.3 7.7 7.1 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family FAM70 PF14967.6 gi|433591190|ref|YP_007280686.1| - 2.1 7.7 4.3 3 7.2 4.2 1.3 1 1 0 1 1 1 0 FAM70 protein DUF4342 PF14242.6 gi|433591190|ref|YP_007280686.1| - 9.1 6.4 10.5 4.6 7.3 6.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) SOUL PF04832.12 gi|433591191|ref|YP_007280687.1| - 2.4e-45 154.7 0.6 3.5e-44 150.9 0.6 1.9 1 1 0 1 1 1 1 SOUL heme-binding protein E1-E2_ATPase PF00122.20 gi|433591192|ref|YP_007280688.1| - 4e-44 150.3 4.4 4e-44 150.3 4.4 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433591192|ref|YP_007280688.1| - 1.3e-30 107.3 2.3 1.3e-30 107.3 2.3 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|433591192|ref|YP_007280688.1| - 8.7e-13 48.5 0.0 2.8e-12 46.9 0.0 1.9 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|433591192|ref|YP_007280688.1| - 0.0043 16.8 0.4 0.032 14.0 1.4 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|433591192|ref|YP_007280688.1| - 0.017 15.8 0.6 0.041 14.6 0.6 1.7 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase DUF1953 PF09196.10 gi|433591192|ref|YP_007280688.1| - 0.023 14.5 0.6 0.096 12.5 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1953) Hydrolase_6 PF13344.6 gi|433591192|ref|YP_007280688.1| - 0.14 12.3 0.0 1 9.5 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Bac_export_2 PF01312.19 gi|433591192|ref|YP_007280688.1| - 1.1 8.5 4.1 4.5 6.4 0.4 2.2 2 0 0 2 2 2 0 FlhB HrpN YscU SpaS Family K_channel_TID PF07941.11 gi|433591193|ref|YP_007280689.1| - 0.17 12.4 3.1 0.42 11.1 3.1 1.6 1 0 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain LOR PF04525.12 gi|433591194|ref|YP_007280690.1| - 0.0094 15.6 0.1 0.064 12.8 0.1 2.2 2 1 0 2 2 2 1 LURP-one-related Usp PF00582.26 gi|433591197|ref|YP_007280693.1| - 0.00022 21.8 0.0 0.00032 21.2 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF21 PF01595.20 gi|433591198|ref|YP_007280694.1| - 1.7e-50 171.2 0.8 2.8e-50 170.5 0.8 1.3 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|433591198|ref|YP_007280694.1| - 7.9e-23 80.3 2.1 1.8e-22 79.1 2.1 1.7 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|433591198|ref|YP_007280694.1| - 4.7e-14 52.6 5.3 6.7e-07 29.7 0.5 3.0 3 0 0 3 3 3 2 CBS domain PHB_acc_N PF07879.11 gi|433591198|ref|YP_007280694.1| - 0.12 12.5 0.7 0.34 11.0 0.1 2.1 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain ABC_tran PF00005.27 gi|433591199|ref|YP_007280695.1| - 1.2e-60 203.9 0.0 5.9e-31 107.8 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|433591199|ref|YP_007280695.1| - 1.9e-36 124.4 0.8 5.6e-17 62.0 0.0 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|433591199|ref|YP_007280695.1| - 2.1e-10 40.9 3.8 0.0074 16.1 0.1 4.1 2 2 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|433591199|ref|YP_007280695.1| - 4.2e-08 32.8 0.8 0.00091 18.9 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|433591199|ref|YP_007280695.1| - 2.3e-07 31.2 2.2 0.013 15.8 0.1 3.7 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|433591199|ref|YP_007280695.1| - 2.2e-05 24.9 0.1 0.32 11.4 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain PRK PF00485.18 gi|433591199|ref|YP_007280695.1| - 6.6e-05 22.7 0.3 0.31 10.8 0.1 2.3 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|433591199|ref|YP_007280695.1| - 0.00011 22.7 0.0 0.081 13.5 0.0 2.8 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|433591199|ref|YP_007280695.1| - 0.00017 21.1 2.4 0.79 9.1 0.0 3.8 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|433591199|ref|YP_007280695.1| - 0.00059 19.8 0.1 1.3 8.9 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 gi|433591199|ref|YP_007280695.1| - 0.0011 19.5 0.0 0.49 10.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|433591199|ref|YP_007280695.1| - 0.0033 17.4 0.4 0.43 10.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|433591199|ref|YP_007280695.1| - 0.0068 16.1 0.1 3.1 7.5 0.0 2.9 3 0 0 3 3 3 1 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|433591199|ref|YP_007280695.1| - 0.009 16.4 0.1 5 7.6 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_33 PF13671.6 gi|433591199|ref|YP_007280695.1| - 0.011 15.9 0.2 1.8 8.7 0.2 2.6 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|433591199|ref|YP_007280695.1| - 0.012 15.3 0.2 4.3 7.0 0.1 2.3 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|433591199|ref|YP_007280695.1| - 0.015 15.1 0.0 3.8 7.2 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein MeaB PF03308.16 gi|433591199|ref|YP_007280695.1| - 0.015 14.3 1.3 1.4 7.8 0.1 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Mg_chelatase PF01078.21 gi|433591199|ref|YP_007280695.1| - 0.021 14.2 0.0 0.79 9.1 0.0 2.7 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 gi|433591199|ref|YP_007280695.1| - 0.024 13.9 0.3 2.1 7.5 0.1 2.5 2 0 0 2 2 2 0 Zeta toxin MMR_HSR1 PF01926.23 gi|433591199|ref|YP_007280695.1| - 0.046 13.8 0.0 8.9 6.4 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase ATPase PF06745.13 gi|433591199|ref|YP_007280695.1| - 0.047 13.0 0.4 2.2 7.6 0.0 2.5 2 0 0 2 2 2 0 KaiC AAA_25 PF13481.6 gi|433591199|ref|YP_007280695.1| - 0.065 12.8 0.0 8.5 5.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain Rad17 PF03215.15 gi|433591199|ref|YP_007280695.1| - 0.091 12.7 0.1 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain APS_kinase PF01583.20 gi|433591199|ref|YP_007280695.1| - 0.11 12.4 0.4 2.4 8.0 0.1 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase NB-ARC PF00931.22 gi|433591199|ref|YP_007280695.1| - 0.16 11.1 0.4 3.9 6.6 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain G-alpha PF00503.20 gi|433591199|ref|YP_007280695.1| - 0.18 10.9 0.0 12 4.9 0.0 2.2 2 0 0 2 2 2 0 G-protein alpha subunit NACHT PF05729.12 gi|433591199|ref|YP_007280695.1| - 0.19 11.6 1.7 11 5.9 0.1 2.4 2 0 0 2 2 2 0 NACHT domain MobB PF03205.14 gi|433591199|ref|YP_007280695.1| - 0.19 11.6 0.3 20 5.1 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CoaE PF01121.20 gi|433591199|ref|YP_007280695.1| - 0.28 10.8 0.8 11 5.7 0.2 2.3 2 0 0 2 2 2 0 Dephospho-CoA kinase BPD_transp_1 PF00528.22 gi|433591200|ref|YP_007280696.1| - 6.1e-21 75.0 13.4 6.1e-21 75.0 13.4 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|433591200|ref|YP_007280696.1| - 9.7e-08 31.9 1.6 3.3e-07 30.2 0.0 2.6 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|433591201|ref|YP_007280697.1| - 1.8e-33 115.8 9.7 1.8e-33 115.8 9.7 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|433591203|ref|YP_007280699.1| - 3.4e-50 171.1 0.1 5.4e-48 163.8 0.1 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle HTH_10 PF04967.12 gi|433591204|ref|YP_007280700.1| - 5.3e-20 71.0 0.1 8.4e-20 70.3 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|433591204|ref|YP_007280700.1| - 0.00016 21.6 0.4 0.00016 21.6 0.4 1.8 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_5 PF01022.20 gi|433591204|ref|YP_007280700.1| - 0.0028 17.5 0.0 0.0062 16.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|433591204|ref|YP_007280700.1| - 0.0046 17.0 0.1 0.014 15.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433591204|ref|YP_007280700.1| - 0.0053 16.6 0.1 0.0093 15.8 0.1 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|433591204|ref|YP_007280700.1| - 0.011 15.2 0.0 0.026 14.0 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|433591204|ref|YP_007280700.1| - 0.013 15.3 0.3 0.027 14.3 0.3 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|433591204|ref|YP_007280700.1| - 0.023 14.2 0.0 0.043 13.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|433591204|ref|YP_007280700.1| - 0.024 14.8 0.0 0.048 13.9 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.27 gi|433591204|ref|YP_007280700.1| - 0.029 14.3 0.1 0.091 12.7 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Phage_CI_repr PF07022.13 gi|433591204|ref|YP_007280700.1| - 0.049 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain PuR_N PF09182.10 gi|433591204|ref|YP_007280700.1| - 0.097 12.6 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal MarR PF01047.22 gi|433591204|ref|YP_007280700.1| - 0.13 12.3 0.0 0.37 10.7 0.0 1.8 1 1 0 1 1 1 0 MarR family HigB-like_toxin PF05015.13 gi|433591204|ref|YP_007280700.1| - 0.14 12.6 0.0 0.89 10.0 0.0 2.1 2 0 0 2 2 2 0 RelE-like toxin of type II toxin-antitoxin system HigB Na_sulph_symp PF00939.19 gi|433591205|ref|YP_007280701.1| - 3.3e-37 128.7 34.3 3.8e-37 128.4 34.3 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|433591205|ref|YP_007280701.1| - 5.6e-11 42.2 38.8 5.6e-11 42.2 38.8 1.9 3 0 0 3 3 3 1 Citrate transporter DUF5337 PF17272.2 gi|433591205|ref|YP_007280701.1| - 0.056 13.3 0.2 0.056 13.3 0.2 4.9 5 1 1 6 6 6 0 Family of unknown function (DUF5337) MFS_1 PF07690.16 gi|433591207|ref|YP_007280703.1| - 2.9e-39 135.0 36.3 2e-19 69.7 18.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|433591207|ref|YP_007280703.1| - 1.8e-06 27.1 20.2 0.016 14.0 4.2 3.6 2 2 1 4 4 4 3 MFS_1 like family DUF2273 PF10031.9 gi|433591207|ref|YP_007280703.1| - 0.14 12.2 0.2 0.14 12.2 0.2 4.6 5 0 0 5 5 5 0 Small integral membrane protein (DUF2273) Rhodanese PF00581.20 gi|433591208|ref|YP_007280704.1| - 8.6e-14 52.0 0.0 1.8e-13 51.0 0.0 1.6 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|433591208|ref|YP_007280704.1| - 9.7e-13 48.6 11.6 4.8e-12 46.3 11.6 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433591208|ref|YP_007280704.1| - 0.0023 17.5 0.9 0.0023 17.5 0.9 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain HTH_10 PF04967.12 gi|433591209|ref|YP_007280705.1| - 2.7e-21 75.1 0.9 4.5e-21 74.4 0.9 1.4 1 0 0 1 1 1 1 HTH DNA binding domain CHAD PF05235.14 gi|433591209|ref|YP_007280705.1| - 0.0018 18.3 2.2 0.0028 17.7 2.2 1.2 1 0 0 1 1 1 1 CHAD domain HTH_24 PF13412.6 gi|433591209|ref|YP_007280705.1| - 0.0036 16.8 0.1 0.016 14.7 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Tnp_1_2 PF13022.6 gi|433591209|ref|YP_007280705.1| - 0.027 14.6 0.1 0.046 13.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase UPF0122 PF04297.14 gi|433591209|ref|YP_007280705.1| - 0.046 14.0 0.0 0.13 12.6 0.0 1.7 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like RAC_head PF16717.5 gi|433591209|ref|YP_007280705.1| - 0.12 13.4 0.2 0.24 12.4 0.1 1.6 2 0 0 2 2 2 0 Ribosome-associated complex head domain Cdc6_C PF09079.11 gi|433591210|ref|YP_007280706.1| - 1.6e-15 56.8 0.0 3.6e-15 55.7 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|433591210|ref|YP_007280706.1| - 5.1e-12 46.5 1.1 1.7e-11 44.8 0.1 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|433591210|ref|YP_007280706.1| - 2.3e-08 34.4 0.0 2.1e-06 28.0 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA PF00004.29 gi|433591210|ref|YP_007280706.1| - 0.00011 22.6 0.1 0.12 12.7 0.0 2.7 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|433591210|ref|YP_007280706.1| - 0.003 17.6 0.3 0.018 15.0 0.3 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|433591210|ref|YP_007280706.1| - 0.0063 16.2 0.0 0.16 11.7 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_assoc_2 PF16193.5 gi|433591210|ref|YP_007280706.1| - 0.018 15.3 0.3 0.055 13.8 0.3 1.8 1 0 0 1 1 1 0 AAA C-terminal domain AAA_2 PF07724.14 gi|433591210|ref|YP_007280706.1| - 0.024 14.8 0.0 0.052 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_lid_4 PF17864.1 gi|433591210|ref|YP_007280706.1| - 0.025 14.3 1.1 0.04 13.7 0.3 1.8 2 0 0 2 2 2 0 RuvB AAA lid domain NACHT PF05729.12 gi|433591210|ref|YP_007280706.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|433591210|ref|YP_007280706.1| - 0.12 12.9 0.0 0.3 11.6 0.0 1.7 1 0 0 1 1 1 0 ABC transporter MitoNEET_N PF10660.9 gi|433591211|ref|YP_007280707.1| - 0.13 12.3 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus DsbD_2 PF13386.6 gi|433591214|ref|YP_007280710.1| - 6.2e-48 163.4 13.8 7.8e-48 163.1 13.8 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF3180 PF11377.8 gi|433591214|ref|YP_007280710.1| - 0.31 11.2 7.3 0.39 10.8 1.3 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF3180) PIRT PF15099.6 gi|433591214|ref|YP_007280710.1| - 2.2 7.8 5.1 0.32 10.6 0.7 1.8 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family YtpI PF14007.6 gi|433591214|ref|YP_007280710.1| - 3.2 7.9 9.7 0.63 10.2 0.5 2.5 2 0 0 2 2 2 0 YtpI-like protein DDE_Tnp_IS1595 PF12762.7 gi|433591215|ref|YP_007280711.1| - 6.1e-20 71.8 0.0 9.2e-20 71.2 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|433591215|ref|YP_007280711.1| - 2.6e-09 36.9 1.0 5.3e-09 35.9 1.0 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|433591215|ref|YP_007280711.1| - 9.1e-06 25.3 5.4 2.3e-05 24.0 5.4 1.7 1 0 0 1 1 1 1 InsA N-terminal domain Zn-ribbon_8 PF09723.10 gi|433591215|ref|YP_007280711.1| - 0.017 15.2 0.7 4.8 7.4 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-Dof PF02701.15 gi|433591215|ref|YP_007280711.1| - 0.031 14.4 3.4 0.064 13.4 3.4 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.6 gi|433591215|ref|YP_007280711.1| - 0.76 10.5 8.4 1.8 9.3 1.0 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.6 gi|433591215|ref|YP_007280711.1| - 1.7 8.6 4.0 6.9 6.7 4.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain TrmB PF01978.19 gi|433591216|ref|YP_007280712.1| - 1.2e-19 69.9 0.3 2.3e-19 69.0 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.20 gi|433591216|ref|YP_007280712.1| - 0.0046 17.0 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain Regulator_TrmB PF11495.8 gi|433591216|ref|YP_007280712.1| - 0.043 13.0 0.0 0.062 12.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB MarR_2 PF12802.7 gi|433591216|ref|YP_007280712.1| - 0.046 13.6 0.0 0.097 12.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|433591216|ref|YP_007280712.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Multi_Drug_Res PF00893.19 gi|433591217|ref|YP_007280713.1| - 2.9e-26 91.9 3.3 3.7e-26 91.6 3.3 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|433591217|ref|YP_007280713.1| - 0.012 15.8 7.6 0.016 15.4 7.6 1.4 1 0 0 1 1 1 0 EamA-like transporter family FAD_binding_2 PF00890.24 gi|433591218|ref|YP_007280714.1| - 1e-07 31.4 0.1 1.7e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|433591218|ref|YP_007280714.1| - 3.8e-06 26.3 0.0 6.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|433591218|ref|YP_007280714.1| - 5.1e-06 26.0 0.0 8.4e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|433591218|ref|YP_007280714.1| - 6.2e-06 26.0 0.1 0.00012 21.7 0.0 2.2 1 1 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|433591218|ref|YP_007280714.1| - 0.00025 20.0 0.1 0.27 10.0 0.0 2.8 2 1 1 3 3 3 2 Tryptophan halogenase Thi4 PF01946.17 gi|433591218|ref|YP_007280714.1| - 0.0004 19.7 0.0 0.00079 18.7 0.0 1.4 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|433591218|ref|YP_007280714.1| - 0.00041 19.2 0.0 0.00059 18.7 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|433591218|ref|YP_007280714.1| - 0.00049 20.3 0.1 0.0015 18.7 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|433591218|ref|YP_007280714.1| - 0.00068 19.1 1.5 0.0015 18.0 0.2 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|433591218|ref|YP_007280714.1| - 0.00069 18.8 0.0 0.0038 16.3 0.0 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.22 gi|433591218|ref|YP_007280714.1| - 0.0014 17.8 0.0 0.0039 16.3 0.0 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|433591218|ref|YP_007280714.1| - 0.0024 17.2 0.0 0.0035 16.6 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|433591218|ref|YP_007280714.1| - 0.075 13.5 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|433591218|ref|YP_007280714.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 gi|433591218|ref|YP_007280714.1| - 0.23 11.3 0.0 0.38 10.6 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HTH_1 PF00126.27 gi|433591219|ref|YP_007280715.1| - 0.00069 19.5 1.0 0.0029 17.5 0.0 2.3 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 gi|433591219|ref|YP_007280715.1| - 0.0033 17.0 0.1 0.006 16.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|433591219|ref|YP_007280715.1| - 0.005 16.7 0.0 0.0073 16.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|433591219|ref|YP_007280715.1| - 0.0077 16.3 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Cdc6_C PF09079.11 gi|433591219|ref|YP_007280715.1| - 0.021 14.8 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain DUF2250 PF10007.9 gi|433591219|ref|YP_007280715.1| - 0.085 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DDE_Tnp_1 PF01609.21 gi|433591223|ref|YP_007280719.1| - 1.1e-21 77.4 0.0 1.7e-21 76.9 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain Beta-Casp PF10996.8 gi|433591224|ref|YP_007280720.1| - 7.5e-17 61.6 0.0 1.7e-16 60.4 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|433591224|ref|YP_007280720.1| - 1.7e-15 57.5 0.0 5e-12 46.2 0.0 2.7 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433591224|ref|YP_007280720.1| - 2e-10 40.5 1.1 6.8e-10 38.8 0.1 2.2 2 1 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|433591224|ref|YP_007280720.1| - 4.2e-08 33.0 0.0 2.2e-07 30.7 0.0 2.2 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|433591224|ref|YP_007280720.1| - 5.8e-07 29.1 0.0 9.9e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain DEP PF00610.21 gi|433591226|ref|YP_007280722.1| - 0.011 15.7 0.2 0.027 14.5 0.0 1.6 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) HATPase_c_3 PF13589.6 gi|433591227|ref|YP_007280723.1| - 8.9e-05 22.3 0.1 0.00019 21.3 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_24 PF13412.6 gi|433591228|ref|YP_007280724.1| - 3.2e-07 29.8 0.1 6.3e-07 28.8 0.1 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433591228|ref|YP_007280724.1| - 4.5e-06 26.5 0.5 6.5e-06 25.9 0.4 1.3 1 1 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|433591228|ref|YP_007280724.1| - 1.5e-05 25.4 0.3 2.2e-05 24.8 0.3 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|433591228|ref|YP_007280724.1| - 2.3e-05 24.3 0.1 3.6e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|433591228|ref|YP_007280724.1| - 0.00027 20.7 0.7 0.00063 19.6 0.3 1.7 1 1 1 2 2 2 1 TFIIE alpha subunit GntR PF00392.21 gi|433591228|ref|YP_007280724.1| - 0.0016 18.1 1.0 0.0023 17.5 1.0 1.4 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|433591228|ref|YP_007280724.1| - 0.0019 18.0 0.2 0.0027 17.6 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RNA_pol_Rpc34 PF05158.12 gi|433591228|ref|YP_007280724.1| - 0.0029 17.1 0.1 0.0033 16.9 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_36 PF13730.6 gi|433591228|ref|YP_007280724.1| - 0.0035 17.3 0.6 0.91 9.5 0.1 2.9 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|433591228|ref|YP_007280724.1| - 0.011 15.8 0.3 0.021 14.9 0.3 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|433591228|ref|YP_007280724.1| - 0.014 15.5 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|433591228|ref|YP_007280724.1| - 0.014 15.8 0.1 0.022 15.1 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.20 gi|433591228|ref|YP_007280724.1| - 0.019 14.8 0.1 0.031 14.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|433591228|ref|YP_007280724.1| - 0.02 14.8 0.1 0.031 14.2 0.1 1.3 1 0 0 1 1 1 0 HTH domain B-block_TFIIIC PF04182.12 gi|433591228|ref|YP_007280724.1| - 0.023 14.8 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2582 PF10771.9 gi|433591228|ref|YP_007280724.1| - 0.023 14.8 0.0 0.032 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) Sigma70_r4_2 PF08281.12 gi|433591228|ref|YP_007280724.1| - 0.031 13.9 0.3 0.057 13.1 0.3 1.5 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_12 PF08461.10 gi|433591228|ref|YP_007280724.1| - 0.036 14.0 0.5 0.052 13.5 0.5 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_DeoR PF08220.12 gi|433591228|ref|YP_007280724.1| - 0.072 12.9 0.2 0.1 12.4 0.2 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PaaX PF07848.12 gi|433591228|ref|YP_007280724.1| - 0.083 13.1 0.4 0.13 12.5 0.4 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_29 PF13551.6 gi|433591228|ref|YP_007280724.1| - 0.097 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix RepL PF05732.11 gi|433591228|ref|YP_007280724.1| - 0.13 11.7 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Peptidase_M78 PF06114.13 gi|433591229|ref|YP_007280725.1| - 0.0012 18.8 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain SprT-like PF10263.9 gi|433591229|ref|YP_007280725.1| - 0.044 13.6 0.1 0.35 10.7 0.0 2.2 2 0 0 2 2 2 0 SprT-like family HTH_7 PF02796.15 gi|433591231|ref|YP_007280727.1| - 9.7e-07 28.8 0.0 2.1e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase TrmB PF01978.19 gi|433591231|ref|YP_007280727.1| - 0.00011 22.0 0.0 0.00026 20.8 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|433591231|ref|YP_007280727.1| - 0.00041 20.2 0.2 0.0011 18.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|433591231|ref|YP_007280727.1| - 0.00063 19.6 0.5 0.0039 17.1 0.0 2.4 3 0 0 3 3 3 1 HTH domain GntR PF00392.21 gi|433591231|ref|YP_007280727.1| - 0.00075 19.1 0.6 0.0044 16.6 0.1 2.3 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|433591231|ref|YP_007280727.1| - 0.0013 18.6 0.2 0.0084 16.1 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|433591231|ref|YP_007280727.1| - 0.006 16.6 0.1 0.02 14.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|433591231|ref|YP_007280727.1| - 0.016 15.0 0.0 0.038 13.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HEPN-like_int PF18867.1 gi|433591231|ref|YP_007280727.1| - 0.045 13.6 0.4 0.068 13.0 0.4 1.2 1 0 0 1 1 1 0 HEPN-like integron domain Rrf2 PF02082.20 gi|433591231|ref|YP_007280727.1| - 0.052 13.9 0.0 0.56 10.6 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator UPF0122 PF04297.14 gi|433591231|ref|YP_007280727.1| - 0.064 13.5 1.6 0.72 10.1 0.6 2.7 1 1 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_IclR PF09339.10 gi|433591231|ref|YP_007280727.1| - 0.067 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain WXG100 PF06013.12 gi|433591231|ref|YP_007280727.1| - 0.07 13.4 2.9 0.39 11.0 0.7 2.3 2 1 0 2 2 2 0 Proteins of 100 residues with WXG TryThrA_C PF12319.8 gi|433591231|ref|YP_007280727.1| - 0.082 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Tryptophan-Threonine-rich plasmodium antigen C terminal Histone_HNS PF00816.21 gi|433591231|ref|YP_007280727.1| - 0.085 13.7 1.7 0.19 12.6 1.7 1.7 1 0 0 1 1 1 0 H-NS histone family Fe_dep_repress PF01325.19 gi|433591231|ref|YP_007280727.1| - 0.12 12.6 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Mobilization_B PF17511.2 gi|433591231|ref|YP_007280727.1| - 0.12 12.8 0.7 0.19 12.1 0.2 1.5 2 0 0 2 2 2 0 Mobilization protein B TetR_N PF00440.23 gi|433591231|ref|YP_007280727.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HalX PF08663.10 gi|433591231|ref|YP_007280727.1| - 1.9 8.9 13.4 1.9 8.9 0.7 2.6 2 1 0 2 2 2 0 HalX domain DDE_Tnp_1 PF01609.21 gi|433591232|ref|YP_007280728.1| - 2.6e-17 63.2 0.0 4.1e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433591232|ref|YP_007280728.1| - 9.2e-05 22.4 0.0 0.00018 21.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) HTH_20 PF12840.7 gi|433591233|ref|YP_007280729.1| - 6.8e-11 42.1 0.8 1.9e-05 24.6 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|433591233|ref|YP_007280729.1| - 9.3e-10 37.9 0.0 8.2e-05 22.1 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433591233|ref|YP_007280729.1| - 1e-06 28.5 0.0 4.9e-05 23.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|433591233|ref|YP_007280729.1| - 0.00024 20.9 0.0 0.00059 19.7 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|433591233|ref|YP_007280729.1| - 0.002 18.0 0.4 0.025 14.4 0.1 2.4 2 0 0 2 2 2 1 MarR family BLACT_WH PF17778.1 gi|433591233|ref|YP_007280729.1| - 0.0049 16.8 0.0 4.1 7.5 0.0 2.4 2 0 0 2 2 2 2 Beta-lactamase associated winged helix domain HTH_10 PF04967.12 gi|433591233|ref|YP_007280729.1| - 0.0053 16.5 0.0 0.029 14.2 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain HTH_34 PF13601.6 gi|433591233|ref|YP_007280729.1| - 0.0068 16.6 0.0 1.6 9.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_30 PF13556.6 gi|433591233|ref|YP_007280729.1| - 0.045 13.6 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain RP-C PF03428.13 gi|433591233|ref|YP_007280729.1| - 0.084 12.5 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain E3_UFM1_ligase PF09743.9 gi|433591233|ref|YP_007280729.1| - 0.1 12.2 0.0 3.2 7.3 0.0 2.1 2 0 0 2 2 2 0 E3 UFM1-protein ligase 1 HTH_27 PF13463.6 gi|433591233|ref|YP_007280729.1| - 0.12 12.9 0.3 0.53 10.8 0.1 2.2 2 1 0 2 2 2 0 Winged helix DNA-binding domain Cytochrom_D1 PF02239.16 gi|433591234|ref|YP_007280730.1| - 1.4e-06 27.1 2.2 0.0035 15.9 0.3 2.8 2 1 1 3 3 3 3 Cytochrome D1 heme domain ANAPC4_WD40 PF12894.7 gi|433591234|ref|YP_007280730.1| - 0.00014 22.1 0.0 0.36 11.1 0.0 3.8 3 1 0 3 3 3 2 Anaphase-promoting complex subunit 4 WD40 domain WHH PF14414.6 gi|433591234|ref|YP_007280730.1| - 0.35 10.8 1.7 1 9.2 0.5 2.3 2 0 0 2 2 2 0 A nuclease of the HNH/ENDO VII superfamily with conserved WHH CopC PF04234.12 gi|433591235|ref|YP_007280731.1| - 5.1e-22 78.7 1.9 1.2e-21 77.5 0.6 2.2 2 0 0 2 2 2 1 CopC domain CopD PF05425.13 gi|433591235|ref|YP_007280731.1| - 5.6e-12 46.0 9.2 5.6e-12 46.0 9.2 5.0 4 2 1 5 5 5 1 Copper resistance protein D FixH PF05751.11 gi|433591235|ref|YP_007280731.1| - 0.00015 21.8 0.1 0.00015 21.8 0.1 2.2 2 0 0 2 2 2 1 FixH YtkA PF13115.6 gi|433591235|ref|YP_007280731.1| - 0.0027 18.3 0.4 0.052 14.2 0.0 2.7 2 1 0 2 2 2 1 YtkA-like DUF4097 PF13349.6 gi|433591235|ref|YP_007280731.1| - 0.074 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Putative adhesin CBM_6 PF03422.15 gi|433591235|ref|YP_007280731.1| - 0.089 13.1 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Carbohydrate binding module (family 6) CinA_KH PF18146.1 gi|433591235|ref|YP_007280731.1| - 0.11 12.7 0.0 28 5.0 0.0 2.9 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain OrfB_Zn_ribbon PF07282.11 gi|433591236|ref|YP_007280732.1| - 1.1e-22 79.7 0.2 2.1e-22 78.8 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain ParD PF09386.10 gi|433591237|ref|YP_007280733.1| - 0.064 13.6 0.0 0.065 13.6 0.0 1.0 1 0 0 1 1 1 0 Antitoxin ParD MFS_1 PF07690.16 gi|433591238|ref|YP_007280734.1| - 9.8e-45 153.0 56.6 4.3e-31 108.1 30.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|433591238|ref|YP_007280734.1| - 2.6e-12 46.0 29.2 3.4e-12 45.6 29.2 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 gi|433591238|ref|YP_007280734.1| - 1.5e-05 24.1 25.3 0.00017 20.6 6.8 2.4 2 1 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.20 gi|433591238|ref|YP_007280734.1| - 0.00096 17.6 21.4 0.0057 15.0 1.7 3.2 2 1 1 3 3 3 3 Organic Anion Transporter Polypeptide (OATP) family DUF2746 PF10874.8 gi|433591240|ref|YP_007280736.1| - 0.12 12.9 0.1 0.21 12.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2746) THP2 PF09432.10 gi|433591240|ref|YP_007280736.1| - 0.12 12.5 1.5 0.27 11.3 0.6 2.1 1 1 1 2 2 2 0 Tho complex subunit THP2 YtkA PF13115.6 gi|433591241|ref|YP_007280737.1| - 0.011 16.3 0.1 0.014 15.9 0.1 1.2 1 0 0 1 1 1 0 YtkA-like Cupredoxin_1 PF13473.6 gi|433591241|ref|YP_007280737.1| - 0.093 12.8 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Cupredoxin-like domain Zn-ribbon_8 PF09723.10 gi|433591242|ref|YP_007280738.1| - 0.0039 17.3 0.9 0.006 16.7 0.9 1.3 1 0 0 1 1 1 1 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|433591242|ref|YP_007280738.1| - 0.016 15.1 0.2 0.032 14.1 0.2 1.5 1 1 0 1 1 1 0 Nudix N-terminal TerY_C PF15616.6 gi|433591242|ref|YP_007280738.1| - 0.016 15.3 0.9 0.019 15.1 0.9 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain AidB_N PF18158.1 gi|433591242|ref|YP_007280738.1| - 0.055 13.4 0.1 0.057 13.3 0.1 1.0 1 0 0 1 1 1 0 Adaptive response protein AidB N-terminal domain zf-ribbon_3 PF13248.6 gi|433591242|ref|YP_007280738.1| - 0.058 12.8 4.2 0.13 11.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RecR PF02132.15 gi|433591242|ref|YP_007280738.1| - 0.11 12.1 0.8 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 RecR protein HalOD1 PF18545.1 gi|433591243|ref|YP_007280739.1| - 2e-17 63.2 0.0 2.5e-17 62.9 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 CorC_HlyC PF03471.17 gi|433591243|ref|YP_007280739.1| - 0.033 14.2 0.0 0.046 13.7 0.0 1.2 1 0 0 1 1 1 0 Transporter associated domain PadR PF03551.14 gi|433591244|ref|YP_007280740.1| - 5.1e-17 61.6 1.1 6.4e-17 61.3 1.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|433591244|ref|YP_007280740.1| - 1.7e-05 24.7 0.2 2.4e-05 24.2 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|433591244|ref|YP_007280740.1| - 0.0064 16.3 0.0 0.0098 15.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.6 gi|433591244|ref|YP_007280740.1| - 0.0099 16.4 0.0 0.012 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain RTP PF02334.16 gi|433591244|ref|YP_007280740.1| - 0.041 14.5 0.1 0.054 14.1 0.1 1.3 1 0 0 1 1 1 0 Replication terminator protein HTH_34 PF13601.6 gi|433591244|ref|YP_007280740.1| - 0.071 13.3 0.0 0.091 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|433591244|ref|YP_007280740.1| - 0.11 12.4 0.1 2 8.3 0.1 2.3 1 1 0 1 1 1 0 MarR family OrfB_IS605 PF01385.19 gi|433591245|ref|YP_007280741.1| - 1.3e-25 90.0 0.0 3.6e-25 88.5 0.0 1.8 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|433591245|ref|YP_007280741.1| - 4.4e-20 71.4 1.3 9.5e-20 70.3 1.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|433591245|ref|YP_007280741.1| - 0.0026 18.0 0.8 0.0073 16.6 0.8 1.8 1 0 0 1 1 1 1 C1 domain Complex1_30kDa PF00329.19 gi|433591245|ref|YP_007280741.1| - 0.051 14.2 0.1 0.12 13.0 0.1 1.7 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 30 Kd subunit tRNA_anti-codon PF01336.25 gi|433591246|ref|YP_007280742.1| - 0.0019 18.2 0.0 0.0037 17.2 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Topoisom_I PF01028.20 gi|433591248|ref|YP_007280744.1| - 0.055 12.7 0.0 0.059 12.6 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic DNA topoisomerase I, catalytic core HTH_5 PF01022.20 gi|433591249|ref|YP_007280745.1| - 6.3e-14 51.6 0.3 8.5e-14 51.2 0.3 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|433591249|ref|YP_007280745.1| - 3.5e-12 46.2 0.0 5.5e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|433591249|ref|YP_007280745.1| - 0.00074 19.3 0.0 0.0018 18.1 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB BLACT_WH PF17778.1 gi|433591249|ref|YP_007280745.1| - 0.003 17.5 0.2 0.0062 16.5 0.2 1.5 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain PaaX PF07848.12 gi|433591249|ref|YP_007280745.1| - 0.0038 17.4 0.0 0.0054 16.9 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein Penicillinase_R PF03965.16 gi|433591249|ref|YP_007280745.1| - 0.0097 16.3 0.0 0.013 15.8 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.6 gi|433591249|ref|YP_007280745.1| - 0.0097 15.4 0.0 0.022 14.3 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433591249|ref|YP_007280745.1| - 0.031 14.2 0.4 0.072 13.0 0.2 1.8 2 1 0 2 2 2 0 MarR family MarR PF01047.22 gi|433591249|ref|YP_007280745.1| - 0.033 14.1 0.0 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_CodY PF08222.11 gi|433591249|ref|YP_007280745.1| - 0.036 13.6 0.0 0.081 12.5 0.0 1.6 2 0 0 2 2 2 0 CodY helix-turn-helix domain Rrf2 PF02082.20 gi|433591249|ref|YP_007280745.1| - 0.037 14.4 0.0 0.07 13.5 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator DUF2513 PF10711.9 gi|433591249|ref|YP_007280745.1| - 0.084 13.2 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) PadR PF03551.14 gi|433591249|ref|YP_007280745.1| - 0.099 12.6 0.1 0.48 10.4 0.0 2.2 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|433591249|ref|YP_007280745.1| - 0.1 12.8 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|433591249|ref|YP_007280745.1| - 0.13 12.5 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|433591249|ref|YP_007280745.1| - 0.14 12.7 0.0 0.23 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain ArsP_1 PF03773.13 gi|433591250|ref|YP_007280746.1| - 4.3e-58 196.8 11.4 5.1e-58 196.5 11.4 1.0 1 0 0 1 1 1 1 Predicted permease DDE_Tnp_IS240 PF13610.6 gi|433591252|ref|YP_007280748.1| - 1.3e-14 54.6 0.1 1.8e-14 54.1 0.1 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.14 gi|433591252|ref|YP_007280748.1| - 9.7e-06 25.3 0.0 3e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.6 gi|433591252|ref|YP_007280748.1| - 0.0036 17.1 0.0 0.03 14.1 0.0 2.1 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|433591252|ref|YP_007280748.1| - 0.062 12.9 3.0 0.36 10.4 0.5 2.3 1 1 1 2 2 2 0 Transposase DDE domain rve PF00665.26 gi|433591252|ref|YP_007280748.1| - 0.13 12.5 0.2 0.36 11.0 0.2 1.7 1 1 0 1 1 1 0 Integrase core domain PadR PF03551.14 gi|433591254|ref|YP_007280750.1| - 4.7e-14 52.1 0.3 5.6e-14 51.9 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|433591254|ref|YP_007280750.1| - 0.00036 20.5 0.1 0.00055 19.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4358 PF14270.6 gi|433591254|ref|YP_007280750.1| - 0.012 15.9 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) HTH_27 PF13463.6 gi|433591254|ref|YP_007280750.1| - 0.024 15.1 0.0 0.029 14.8 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|433591254|ref|YP_007280750.1| - 0.07 13.0 0.0 0.092 12.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|433591254|ref|YP_007280750.1| - 0.074 12.8 0.0 0.11 12.2 0.0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DUF505 PF04458.12 gi|433591254|ref|YP_007280750.1| - 0.079 11.3 0.1 0.085 11.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_34 PF13601.6 gi|433591254|ref|YP_007280750.1| - 0.099 12.8 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|433591255|ref|YP_007280751.1| - 1.3e-05 25.0 0.3 3.8e-05 23.5 0.3 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|433591255|ref|YP_007280751.1| - 7.5e-05 22.5 0.1 0.00014 21.6 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|433591255|ref|YP_007280751.1| - 0.00018 21.3 0.0 0.0003 20.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|433591255|ref|YP_007280751.1| - 0.0026 17.3 0.0 0.0044 16.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|433591255|ref|YP_007280751.1| - 0.014 15.5 0.1 0.073 13.2 0.2 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1724 PF08350.10 gi|433591255|ref|YP_007280751.1| - 0.018 15.2 0.0 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_Crp_2 PF13545.6 gi|433591255|ref|YP_007280751.1| - 0.022 14.7 0.1 0.056 13.4 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|433591255|ref|YP_007280751.1| - 0.032 13.9 0.2 0.065 12.9 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|433591255|ref|YP_007280751.1| - 0.044 13.6 0.2 0.092 12.6 0.2 1.5 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.22 gi|433591255|ref|YP_007280751.1| - 0.056 13.4 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|433591255|ref|YP_007280751.1| - 0.072 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix CENP-B_N PF04218.13 gi|433591255|ref|YP_007280751.1| - 0.095 12.3 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain SnoaL PF07366.12 gi|433591256|ref|YP_007280752.1| - 5e-27 94.2 0.1 5.6e-27 94.0 0.1 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|433591256|ref|YP_007280752.1| - 1.2e-19 70.8 0.2 1.4e-19 70.6 0.2 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|433591256|ref|YP_007280752.1| - 0.00012 22.5 0.0 0.00015 22.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 gi|433591256|ref|YP_007280752.1| - 0.0054 17.0 0.0 0.0078 16.5 0.0 1.3 1 0 0 1 1 1 1 SnoaL-like domain CaMKII_AD PF08332.10 gi|433591256|ref|YP_007280752.1| - 0.0092 16.1 0.0 0.016 15.3 0.0 1.3 1 0 0 1 1 1 1 Calcium/calmodulin dependent protein kinase II association domain SnoaL_4 PF13577.6 gi|433591256|ref|YP_007280752.1| - 0.059 13.5 0.0 0.089 12.9 0.0 1.3 1 1 0 1 1 1 0 SnoaL-like domain NUMOD1 PF07453.13 gi|433591257|ref|YP_007280753.1| - 0.00086 19.5 0.1 0.0032 17.7 0.1 2.0 1 0 0 1 1 1 1 NUMOD1 domain HTH_23 PF13384.6 gi|433591257|ref|YP_007280753.1| - 0.13 12.1 0.0 0.34 10.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain ATPase_2 PF01637.18 gi|433591258|ref|YP_007280754.1| - 7.1e-28 98.1 0.0 2.6e-27 96.2 0.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|433591258|ref|YP_007280754.1| - 3.7e-15 56.2 0.0 8.9e-15 55.0 0.0 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|433591258|ref|YP_007280754.1| - 3.8e-06 27.0 0.0 7e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433591258|ref|YP_007280754.1| - 7e-05 23.3 1.7 7.1e-05 23.3 0.0 1.9 2 0 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|433591258|ref|YP_007280754.1| - 7.8e-05 23.0 0.0 0.00017 21.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain HTH_5 PF01022.20 gi|433591258|ref|YP_007280754.1| - 0.00012 21.9 0.0 0.00028 20.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|433591258|ref|YP_007280754.1| - 0.00037 20.2 0.2 0.0012 18.6 0.2 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433591258|ref|YP_007280754.1| - 0.00062 19.6 0.0 0.0018 18.1 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|433591258|ref|YP_007280754.1| - 0.035 13.7 0.0 0.07 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433591258|ref|YP_007280754.1| - 0.048 13.7 0.4 0.22 11.6 0.1 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain TrmB PF01978.19 gi|433591258|ref|YP_007280754.1| - 0.051 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|433591258|ref|YP_007280754.1| - 0.091 12.8 0.1 0.2 11.6 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain AAA_25 PF13481.6 gi|433591258|ref|YP_007280754.1| - 0.11 12.1 0.1 1.5 8.3 0.1 2.4 2 1 1 3 3 3 0 AAA domain DUF21 PF01595.20 gi|433591260|ref|YP_007280756.1| - 2.1e-28 99.2 0.1 2.9e-28 98.8 0.1 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|433591260|ref|YP_007280756.1| - 2.9e-08 34.0 0.4 3.8e-06 27.2 0.0 2.4 2 0 0 2 2 2 2 CBS domain DUF3218 PF11508.8 gi|433591260|ref|YP_007280756.1| - 0.05 13.1 0.0 0.099 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3218) Usp PF00582.26 gi|433591261|ref|YP_007280757.1| - 3.4e-29 102.2 0.4 3.9e-29 102.0 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|433591262|ref|YP_007280758.1| - 1.5e-54 184.3 6.2 5.7e-30 104.7 0.0 2.0 2 0 0 2 2 2 2 Universal stress protein family Usp PF00582.26 gi|433591263|ref|YP_007280759.1| - 7.8e-26 91.3 4.2 8.8e-26 91.1 4.2 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.15 gi|433591263|ref|YP_007280759.1| - 0.017 15.9 0.0 0.032 15.0 0.0 1.5 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain Usp PF00582.26 gi|433591264|ref|YP_007280760.1| - 0.0006 20.3 1.7 0.00089 19.8 1.7 1.3 1 1 0 1 1 1 1 Universal stress protein family Cytochrom_D1 PF02239.16 gi|433591265|ref|YP_007280761.1| - 2.2e-60 204.1 0.0 3e-60 203.7 0.0 1.1 1 0 0 1 1 1 1 Cytochrome D1 heme domain PQQ_2 PF13360.6 gi|433591265|ref|YP_007280761.1| - 0.003 17.2 0.2 0.29 10.7 0.0 2.2 2 0 0 2 2 2 2 PQQ-like domain SGL PF08450.12 gi|433591265|ref|YP_007280761.1| - 0.031 13.9 0.0 3.9 7.0 0.0 3.1 1 1 2 3 3 3 0 SMP-30/Gluconolactonase/LRE-like region PQQ_3 PF13570.6 gi|433591265|ref|YP_007280761.1| - 0.082 13.4 7.2 1.1 9.9 0.0 4.9 5 1 0 5 5 5 0 PQQ-like domain Tenui_PVC2 PF06656.11 gi|433591265|ref|YP_007280761.1| - 0.13 10.2 0.0 0.18 9.7 0.0 1.1 1 0 0 1 1 1 0 Tenuivirus PVC2 protein Oxidored_molyb PF00174.19 gi|433591266|ref|YP_007280762.1| - 7.4e-28 97.3 0.0 9.9e-28 96.9 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain CMD PF02627.20 gi|433591267|ref|YP_007280763.1| - 6.2e-13 48.6 5.7 5.1e-12 45.7 1.4 2.8 2 1 0 2 2 2 2 Carboxymuconolactone decarboxylase family MaoC_dehydratas PF01575.19 gi|433591268|ref|YP_007280764.1| - 6.9e-19 67.6 0.0 9.1e-19 67.2 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|433591268|ref|YP_007280764.1| - 7.4e-10 39.1 0.0 1.2e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase MFS_1 PF07690.16 gi|433591269|ref|YP_007280765.1| - 2.5e-45 155.0 62.2 6.5e-29 101.0 26.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|433591269|ref|YP_007280765.1| - 0.016 14.1 16.6 0.056 12.3 7.8 3.0 2 1 0 2 2 2 0 MFS_1 like family OATP PF03137.20 gi|433591269|ref|YP_007280765.1| - 0.09 11.1 5.4 0.56 8.4 0.1 3.2 1 1 2 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Epimerase PF01370.21 gi|433591270|ref|YP_007280766.1| - 4.8e-44 150.6 0.2 5.8e-44 150.4 0.2 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|433591270|ref|YP_007280766.1| - 1.5e-41 142.9 0.2 4.9e-41 141.2 0.2 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|433591270|ref|YP_007280766.1| - 1e-11 44.5 0.2 1.1e-11 44.3 0.2 1.2 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|433591270|ref|YP_007280766.1| - 1.3e-11 44.1 0.1 2.1e-11 43.3 0.1 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|433591270|ref|YP_007280766.1| - 3.1e-10 39.7 0.0 9.2e-07 28.3 0.0 2.7 3 0 0 3 3 3 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|433591270|ref|YP_007280766.1| - 2e-08 33.7 0.1 7.3e-06 25.3 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|433591270|ref|YP_007280766.1| - 0.001 19.0 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|433591270|ref|YP_007280766.1| - 0.0034 17.3 0.0 0.65 9.9 0.0 2.2 2 0 0 2 2 2 2 KR domain DUF3400 PF11880.8 gi|433591270|ref|YP_007280766.1| - 0.057 13.0 0.5 2.3 7.8 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3400) adh_short PF00106.25 gi|433591270|ref|YP_007280766.1| - 0.1 12.1 0.2 0.31 10.5 0.0 1.9 2 1 1 3 3 3 0 short chain dehydrogenase DUF1188 PF06690.11 gi|433591270|ref|YP_007280766.1| - 0.18 11.3 0.1 0.25 10.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) PEPcase PF00311.17 gi|433591271|ref|YP_007280767.1| - 1.8e-241 803.6 0.0 3.2e-241 802.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|433591271|ref|YP_007280767.1| - 0.00054 18.6 0.0 0.00092 17.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Activator-TraM PF11657.8 gi|433591271|ref|YP_007280767.1| - 0.048 13.5 3.5 0.05 13.4 0.3 2.6 3 0 0 3 3 3 0 Transcriptional activator TraM Peptidase_M16 PF00675.20 gi|433591271|ref|YP_007280767.1| - 0.2 11.6 0.1 0.2 11.6 0.1 2.2 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) Ferredoxin_N PF16947.5 gi|433591272|ref|YP_007280768.1| - 1.2e-35 121.4 5.9 1.2e-35 121.4 5.9 2.1 2 0 0 2 2 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Fer4_7 PF12838.7 gi|433591272|ref|YP_007280768.1| - 1.2e-13 51.4 23.8 3.9e-05 24.1 0.8 4.3 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|433591272|ref|YP_007280768.1| - 1.9e-11 44.0 5.7 1.9e-11 44.0 5.7 2.8 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433591272|ref|YP_007280768.1| - 1.2e-08 34.9 22.6 2.2e-06 27.7 0.8 3.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|433591272|ref|YP_007280768.1| - 8.1e-08 32.0 34.3 0.00018 21.5 2.6 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|433591272|ref|YP_007280768.1| - 7.1e-07 29.3 23.8 0.015 15.4 2.6 4.0 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|433591272|ref|YP_007280768.1| - 2.2e-06 27.4 31.6 0.00019 21.3 1.7 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4 PF00037.27 gi|433591272|ref|YP_007280768.1| - 4.3e-06 26.3 36.4 0.00012 21.7 3.3 5.0 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|433591272|ref|YP_007280768.1| - 0.0002 21.8 16.2 0.045 14.3 2.0 4.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|433591272|ref|YP_007280768.1| - 0.0092 16.4 2.4 0.0092 16.4 2.4 3.6 2 2 1 3 3 3 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|433591272|ref|YP_007280768.1| - 0.033 14.9 12.7 0.22 12.3 1.6 3.7 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|433591272|ref|YP_007280768.1| - 0.047 14.6 39.3 0.74 10.9 5.1 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|433591272|ref|YP_007280768.1| - 0.087 13.8 24.6 1.3 10.0 2.0 4.5 3 1 2 5 5 5 0 4Fe-4S double cluster binding domain SHOCT PF09851.9 gi|433591272|ref|YP_007280768.1| - 0.17 11.7 7.5 0.36 10.6 0.1 2.7 2 0 0 2 2 2 0 Short C-terminal domain Fer4_21 PF14697.6 gi|433591272|ref|YP_007280768.1| - 0.33 11.1 21.8 2.6 8.2 10.8 3.2 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|433591272|ref|YP_007280768.1| - 0.97 10.1 29.4 0.28 11.8 2.9 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain HMGL-like PF00682.19 gi|433591274|ref|YP_007280770.1| - 5.3e-66 222.9 1.6 1.1e-65 221.9 1.6 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|433591274|ref|YP_007280770.1| - 6.6e-30 103.7 3.2 1.3e-29 102.7 3.2 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain PSK_trans_fac PF07704.11 gi|433591274|ref|YP_007280770.1| - 9.8 7.0 12.1 88 4.0 0.0 4.5 3 1 1 4 4 4 0 Rv0623-like transcription factor DUF192 PF02643.15 gi|433591275|ref|YP_007280771.1| - 2.2e-23 82.2 0.0 2.6e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF2387 PF09526.10 gi|433591277|ref|YP_007280773.1| - 0.021 14.9 0.2 0.038 14.1 0.2 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) RecA_dep_nuc PF16786.5 gi|433591277|ref|YP_007280773.1| - 0.076 13.2 0.3 0.11 12.6 0.3 1.3 1 0 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease adh_short PF00106.25 gi|433591278|ref|YP_007280774.1| - 7.7e-51 172.3 0.0 9.5e-51 172.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|433591278|ref|YP_007280774.1| - 2.3e-42 145.2 0.0 3.2e-42 144.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|433591278|ref|YP_007280774.1| - 2.2e-13 50.5 0.0 3.2e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|433591278|ref|YP_007280774.1| - 1.6e-09 37.9 0.2 5e-09 36.3 0.2 1.8 1 1 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|433591278|ref|YP_007280774.1| - 1.9e-06 27.2 0.1 3.1e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|433591278|ref|YP_007280774.1| - 5.3e-06 26.1 0.1 1.1e-05 25.1 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|433591278|ref|YP_007280774.1| - 0.00021 20.9 0.1 0.00032 20.3 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family DUF1776 PF08643.10 gi|433591278|ref|YP_007280774.1| - 0.0031 16.9 0.0 0.0044 16.4 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) TrkA_N PF02254.18 gi|433591278|ref|YP_007280774.1| - 0.021 15.1 0.5 0.066 13.5 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain NanE PF04131.14 gi|433591278|ref|YP_007280774.1| - 0.078 12.2 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Endonuclease_5 PF04493.14 gi|433591279|ref|YP_007280775.1| - 6.2e-53 179.4 0.0 7.7e-53 179.1 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|433591279|ref|YP_007280775.1| - 0.0072 15.8 0.1 0.4 10.1 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF99 Acetyltransf_1 PF00583.25 gi|433591279|ref|YP_007280775.1| - 0.18 12.1 0.0 0.42 10.9 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Rhomboid PF01694.22 gi|433591280|ref|YP_007280776.1| - 2.3e-26 92.6 14.5 2.3e-26 92.6 14.5 1.5 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|433591280|ref|YP_007280776.1| - 5.2e-12 45.7 7.5 7.6e-12 45.2 7.5 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|433591280|ref|YP_007280776.1| - 0.0076 16.8 1.7 0.021 15.4 0.2 2.2 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) zf-HIT PF04438.16 gi|433591280|ref|YP_007280776.1| - 0.035 14.0 5.1 0.05 13.5 5.1 1.2 1 0 0 1 1 1 0 HIT zinc finger CPP1-like PF11833.8 gi|433591280|ref|YP_007280776.1| - 0.099 12.3 4.1 0.18 11.5 4.1 1.4 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like zf-UBP PF02148.19 gi|433591280|ref|YP_007280776.1| - 1.4 9.3 5.7 2.3 8.6 5.7 1.3 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein SseC PF04888.12 gi|433591281|ref|YP_007280777.1| - 1.2 8.7 2.4 1.4 8.5 2.4 1.0 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family Phage_holin_3_6 PF07332.11 gi|433591281|ref|YP_007280777.1| - 1.4 8.9 6.1 1.6 8.8 6.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Acetyltransf_11 PF13720.6 gi|433591282|ref|YP_007280778.1| - 0.062 13.8 0.2 0.28 11.7 0.2 2.0 1 1 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DNA_pol_B_thumb PF14791.6 gi|433591283|ref|YP_007280779.1| - 1.8e-23 82.4 0.0 6.7e-23 80.6 0.0 2.1 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|433591283|ref|YP_007280779.1| - 3.5e-20 72.1 4.9 5.3e-16 58.7 0.2 3.8 2 1 1 3 3 3 3 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|433591283|ref|YP_007280779.1| - 1.4e-18 67.2 3.3 1.4e-12 48.1 0.2 3.0 1 1 2 3 3 3 2 Helix-hairpin-helix domain PHP PF02811.19 gi|433591283|ref|YP_007280779.1| - 1.4e-08 35.3 0.0 2.2e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 PHP domain HHH_2 PF12826.7 gi|433591283|ref|YP_007280779.1| - 4.9e-07 29.7 3.0 0.017 15.2 0.0 3.4 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|433591283|ref|YP_007280779.1| - 2.5e-06 27.2 0.0 2.3e-05 24.1 0.0 2.5 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|433591283|ref|YP_007280779.1| - 2.4e-05 23.9 1.7 0.0019 18.0 0.1 4.0 4 0 0 4 4 4 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|433591283|ref|YP_007280779.1| - 0.00047 20.3 0.2 0.0016 18.7 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase beta palm HHH_3 PF12836.7 gi|433591283|ref|YP_007280779.1| - 0.00085 19.5 0.0 1.3 9.4 0.0 3.5 2 1 0 2 2 2 1 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|433591283|ref|YP_007280779.1| - 0.0018 18.5 0.1 2.7 8.5 0.0 2.7 2 0 0 2 2 2 2 IMS family HHH motif 5_3_exonuc PF01367.20 gi|433591283|ref|YP_007280779.1| - 0.02 15.5 0.3 2 9.1 0.1 3.1 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Cdd1 PF11731.8 gi|433591283|ref|YP_007280779.1| - 0.022 15.0 0.0 0.22 11.8 0.0 2.4 1 1 1 2 2 2 0 Pathogenicity locus Ribosomal_S13 PF00416.22 gi|433591283|ref|YP_007280779.1| - 0.15 12.4 2.2 4.2 7.8 0.0 3.5 2 1 2 4 4 4 0 Ribosomal protein S13/S18 Mut7-C PF01927.16 gi|433591284|ref|YP_007280780.1| - 8.3e-36 123.3 0.0 9.3e-36 123.1 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|433591284|ref|YP_007280780.1| - 0.0011 18.7 0.0 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) RNA_POL_M_15KD PF02150.16 gi|433591285|ref|YP_007280781.1| - 2.3e-08 33.7 1.5 2.3e-08 33.7 1.5 2.3 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|433591285|ref|YP_007280781.1| - 0.00049 20.0 5.2 0.0038 17.1 1.1 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 gi|433591285|ref|YP_007280781.1| - 0.017 15.1 5.9 0.21 11.5 0.1 3.0 3 1 0 3 3 3 0 PhnA Zinc-Ribbon TFIIS_C PF01096.18 gi|433591285|ref|YP_007280781.1| - 0.044 13.6 0.2 0.044 13.6 0.2 3.7 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.6 gi|433591285|ref|YP_007280781.1| - 0.045 13.7 2.5 0.069 13.1 0.6 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DZR PF12773.7 gi|433591285|ref|YP_007280781.1| - 0.061 13.4 1.1 0.061 13.4 1.1 2.5 2 1 0 2 2 2 0 Double zinc ribbon zf-C4pol PF14260.6 gi|433591285|ref|YP_007280781.1| - 0.83 10.2 6.3 0.23 12.0 2.8 1.8 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta IBR PF01485.21 gi|433591285|ref|YP_007280781.1| - 1.5 9.1 10.0 1.6 9.0 1.3 2.4 2 1 0 2 2 2 0 IBR domain, a half RING-finger domain DUF2318 PF10080.9 gi|433591285|ref|YP_007280781.1| - 1.5 9.0 4.9 2.9 8.0 1.0 2.4 2 1 0 2 2 2 0 Predicted membrane protein (DUF2318) MR_MLE_C PF13378.6 gi|433591286|ref|YP_007280782.1| - 4.3e-62 209.5 0.6 6.1e-62 209.1 0.6 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|433591286|ref|YP_007280782.1| - 2e-14 53.8 0.1 5.9e-14 52.3 0.1 1.7 1 1 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Amidohydro_2 PF04909.14 gi|433591286|ref|YP_007280782.1| - 0.043 13.6 0.7 0.12 12.1 0.1 1.9 2 0 0 2 2 2 0 Amidohydrolase DUF4140 PF13600.6 gi|433591286|ref|YP_007280782.1| - 0.043 14.2 0.0 0.088 13.3 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) BMFP PF04380.13 gi|433591286|ref|YP_007280782.1| - 0.092 13.2 0.2 0.22 12.0 0.2 1.6 1 0 0 1 1 1 0 Membrane fusogenic activity PHP_C PF13263.6 gi|433591287|ref|YP_007280783.1| - 1.1e-14 53.9 0.0 2.5e-14 52.8 0.0 1.6 1 0 0 1 1 1 1 PHP-associated zf-C2H2 PF00096.26 gi|433591288|ref|YP_007280784.1| - 0.002 18.5 0.0 3.2 8.4 0.0 2.3 2 0 0 2 2 2 2 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|433591288|ref|YP_007280784.1| - 0.064 14.1 0.1 16 6.6 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger FOXP-CC PF16159.5 gi|433591288|ref|YP_007280784.1| - 0.068 13.8 0.5 0.65 10.7 0.1 2.2 1 1 1 2 2 2 0 FOXP coiled-coil domain TF_Zn_Ribbon PF08271.12 gi|433591288|ref|YP_007280784.1| - 0.11 12.1 1.4 2.7 7.6 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|433591288|ref|YP_007280784.1| - 0.17 12.0 1.4 0.33 11.1 1.4 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DUF900 PF05990.12 gi|433591289|ref|YP_007280785.1| - 3e-08 33.5 0.0 4.8e-08 32.8 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) Cutinase PF01083.22 gi|433591289|ref|YP_007280785.1| - 0.00094 19.2 0.2 0.0018 18.2 0.2 1.5 1 1 0 1 1 1 1 Cutinase PGAP1 PF07819.13 gi|433591289|ref|YP_007280785.1| - 0.0018 18.0 0.0 0.0047 16.7 0.0 1.6 2 0 0 2 2 2 1 PGAP1-like protein Hydrolase_4 PF12146.8 gi|433591289|ref|YP_007280785.1| - 0.0044 16.3 0.1 0.015 14.5 0.1 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|433591289|ref|YP_007280785.1| - 0.0086 15.7 0.1 0.01 15.5 0.1 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF676 PF05057.14 gi|433591289|ref|YP_007280785.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.4 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Lipase_3 PF01764.25 gi|433591289|ref|YP_007280785.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Lipase (class 3) TAT_signal PF10518.9 gi|433591289|ref|YP_007280785.1| - 0.34 10.8 3.8 1 9.4 3.8 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MBG_2 PF18676.1 gi|433591289|ref|YP_007280785.1| - 1.3 9.7 7.8 0.16 12.6 1.3 2.8 2 1 1 3 3 3 0 MBG domain (YGX type) Spt5-NGN PF03439.13 gi|433591290|ref|YP_007280786.1| - 1.5e-23 82.5 0.1 2.3e-23 81.9 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|433591290|ref|YP_007280786.1| - 6.8e-08 32.2 0.8 1.3e-07 31.3 0.3 1.8 2 0 0 2 2 2 1 KOW motif Glyco_hydro_65C PF03633.15 gi|433591290|ref|YP_007280786.1| - 0.1 12.5 0.2 0.19 11.7 0.2 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain DbpA PF03880.15 gi|433591290|ref|YP_007280786.1| - 0.14 12.2 0.1 0.31 11.1 0.1 1.6 1 0 0 1 1 1 0 DbpA RNA binding domain SecE PF00584.20 gi|433591291|ref|YP_007280787.1| - 4.9e-05 23.2 0.5 5.9e-05 22.9 0.5 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Trypsin_2 PF13365.6 gi|433591293|ref|YP_007280789.1| - 8.5e-29 101.4 0.9 1.6e-28 100.5 0.9 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|433591293|ref|YP_007280789.1| - 4.6e-14 52.5 0.1 8.6e-14 51.6 0.1 1.5 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|433591293|ref|YP_007280789.1| - 4.9e-11 42.9 0.0 9.1e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Trypsin PDZ PF00595.24 gi|433591293|ref|YP_007280789.1| - 0.0056 17.0 0.2 0.026 14.9 0.2 2.1 1 1 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|433591293|ref|YP_007280789.1| - 0.0074 16.1 3.9 0.052 13.4 1.2 3.1 2 1 0 2 2 2 1 PDZ domain Tricorn_PDZ PF14685.6 gi|433591293|ref|YP_007280789.1| - 0.089 12.8 0.1 0.44 10.5 0.0 2.0 2 0 0 2 2 2 0 Tricorn protease PDZ domain Peptidase_S46 PF10459.9 gi|433591293|ref|YP_007280789.1| - 0.27 9.8 1.8 0.89 8.1 0.3 1.9 2 0 0 2 2 2 0 Peptidase S46 MR_MLE_C PF13378.6 gi|433591294|ref|YP_007280790.1| - 3.2e-58 196.9 2.0 4.3e-58 196.5 2.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|433591294|ref|YP_007280790.1| - 2.2e-13 50.4 0.0 4.8e-13 49.3 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SAM_4 PF18017.1 gi|433591295|ref|YP_007280791.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) DUF5364 PF17322.2 gi|433591295|ref|YP_007280791.1| - 0.2 12.0 4.4 0.32 11.3 4.4 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5364) tRNA_SAD PF07973.14 gi|433591296|ref|YP_007280792.1| - 6.3e-11 42.2 0.1 1.1e-10 41.5 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|433591296|ref|YP_007280792.1| - 2.5e-05 23.0 0.0 3.4e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) HTH_31 PF13560.6 gi|433591297|ref|YP_007280793.1| - 0.00054 20.2 2.9 0.00099 19.4 2.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|433591297|ref|YP_007280793.1| - 0.0033 17.4 0.0 0.005 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|433591297|ref|YP_007280793.1| - 0.012 15.7 1.0 0.023 14.8 1.0 1.3 1 0 0 1 1 1 0 Zinc ribbon domain HTH_3 PF01381.22 gi|433591297|ref|YP_007280793.1| - 0.023 14.7 1.4 0.044 13.8 1.4 1.5 1 1 0 1 1 1 0 Helix-turn-helix HTH_25 PF13413.6 gi|433591297|ref|YP_007280793.1| - 0.028 14.3 0.8 0.052 13.4 0.8 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.12 gi|433591297|ref|YP_007280793.1| - 0.28 11.1 2.2 0.77 9.8 2.2 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DnaJ PF00226.31 gi|433591298|ref|YP_007280794.1| - 1.6e-20 73.0 1.7 2.3e-20 72.4 1.7 1.2 1 0 0 1 1 1 1 DnaJ domain Macoilin PF09726.9 gi|433591298|ref|YP_007280794.1| - 0.46 9.0 0.9 0.53 8.8 0.9 1.1 1 0 0 1 1 1 0 Macoilin family IMS PF00817.20 gi|433591299|ref|YP_007280795.1| - 1.5e-37 128.9 0.1 2.4e-37 128.2 0.1 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|433591299|ref|YP_007280795.1| - 3e-13 50.5 0.0 1.9e-12 47.9 0.0 2.2 2 1 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|433591299|ref|YP_007280795.1| - 1.5e-05 25.0 0.0 3.1e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.9 gi|433591299|ref|YP_007280795.1| - 0.0033 17.2 0.0 0.0072 16.1 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_5 PF14520.6 gi|433591299|ref|YP_007280795.1| - 0.0048 17.5 0.0 0.02 15.5 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|433591299|ref|YP_007280795.1| - 0.033 14.4 0.0 0.08 13.2 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus Acetyltransf_1 PF00583.25 gi|433591300|ref|YP_007280796.1| - 4e-12 46.4 0.1 8.8e-12 45.3 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|433591300|ref|YP_007280796.1| - 5.9e-09 36.2 0.0 5.9e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|433591300|ref|YP_007280796.1| - 5.6e-07 29.9 0.0 1.2e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433591300|ref|YP_007280796.1| - 0.0001 22.2 0.0 0.0002 21.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|433591300|ref|YP_007280796.1| - 0.00013 22.2 2.0 0.00013 22.2 2.0 1.8 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|433591300|ref|YP_007280796.1| - 0.00039 20.5 0.1 0.00087 19.4 0.1 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|433591300|ref|YP_007280796.1| - 0.0071 17.0 0.3 0.012 16.3 0.1 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain SelB-wing_2 PF09106.11 gi|433591300|ref|YP_007280796.1| - 0.017 15.3 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix Acetyltransf_9 PF13527.7 gi|433591300|ref|YP_007280796.1| - 0.019 15.0 0.2 0.095 12.8 0.2 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain UBA_4 PF14555.6 gi|433591300|ref|YP_007280796.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 UBA-like domain TFIIS_C PF01096.18 gi|433591301|ref|YP_007280797.1| - 6.6e-17 61.1 2.7 6.6e-17 61.1 2.7 2.5 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|433591301|ref|YP_007280797.1| - 1.7e-05 24.6 10.8 0.00019 21.2 1.7 3.3 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|433591301|ref|YP_007280797.1| - 0.0072 16.2 13.0 0.11 12.4 3.7 2.7 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|433591301|ref|YP_007280797.1| - 0.012 15.6 9.2 0.2 11.6 1.4 3.2 3 1 0 3 3 3 0 Prokaryotic RING finger family 1 DZR PF12773.7 gi|433591301|ref|YP_007280797.1| - 0.012 15.6 10.1 0.25 11.4 1.0 2.9 2 1 0 2 2 2 0 Double zinc ribbon ADK_lid PF05191.14 gi|433591301|ref|YP_007280797.1| - 0.021 14.8 12.8 3.5 7.7 3.7 4.0 3 1 0 3 3 3 0 Adenylate kinase, active site lid zf-RING_7 PF02591.15 gi|433591301|ref|YP_007280797.1| - 0.024 14.8 2.1 11 6.3 0.1 3.4 3 0 0 3 3 3 0 C4-type zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|433591301|ref|YP_007280797.1| - 0.027 14.4 0.4 0.027 14.4 0.4 2.2 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Ogr_Delta PF04606.12 gi|433591301|ref|YP_007280797.1| - 0.061 13.3 9.2 0.47 10.5 0.1 3.6 2 2 1 3 3 3 0 Ogr/Delta-like zinc finger zf_UBZ PF18439.1 gi|433591301|ref|YP_007280797.1| - 0.11 12.1 10.2 2.1 8.0 0.1 3.8 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|433591301|ref|YP_007280797.1| - 0.19 11.2 13.9 1.8 8.1 0.5 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zf-C2H2_6 PF13912.6 gi|433591301|ref|YP_007280797.1| - 0.2 11.7 3.0 4.5 7.4 0.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_4 PF13717.6 gi|433591301|ref|YP_007280797.1| - 0.27 11.2 3.7 1.7 8.6 0.2 2.9 3 1 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|433591301|ref|YP_007280797.1| - 0.28 10.7 13.6 2.6 7.6 0.5 4.2 3 2 0 4 4 4 0 TFIIB zinc-binding YhfH PF14149.6 gi|433591301|ref|YP_007280797.1| - 0.43 10.6 9.8 5 7.2 0.0 3.7 4 0 0 4 4 4 0 YhfH-like protein Lar_restr_allev PF14354.6 gi|433591301|ref|YP_007280797.1| - 0.44 11.0 14.2 0.74 10.2 0.1 3.6 1 1 2 3 3 3 0 Restriction alleviation protein Lar HypA PF01155.19 gi|433591301|ref|YP_007280797.1| - 0.96 9.5 8.1 0.75 9.8 0.7 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_recom PF13408.6 gi|433591301|ref|YP_007280797.1| - 1.4 9.5 8.1 20 5.8 2.5 3.3 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain zinc_ribbon_2 PF13240.6 gi|433591301|ref|YP_007280797.1| - 1.5 8.6 13.3 11 5.8 0.1 4.2 5 0 0 5 5 5 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|433591301|ref|YP_007280797.1| - 1.5 8.6 11.5 11 5.8 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain zf-tcix PF14952.6 gi|433591301|ref|YP_007280797.1| - 1.7 8.3 7.3 4.6 6.9 0.3 3.0 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding DNA_RNApol_7kD PF03604.13 gi|433591301|ref|YP_007280797.1| - 1.7 8.4 10.7 6.2 6.6 0.1 3.7 3 1 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.6 gi|433591301|ref|YP_007280797.1| - 2.3 8.2 13.2 4.4 7.3 1.8 4.2 2 2 2 4 4 4 0 Nudix N-terminal zf-IS66 PF13005.7 gi|433591301|ref|YP_007280797.1| - 2.4 8.6 7.6 16 6.0 0.4 3.6 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-ACC PF17848.1 gi|433591301|ref|YP_007280797.1| - 2.7 8.1 13.9 6.7 6.9 0.4 4.1 4 1 0 4 4 3 0 Acetyl-coA carboxylase zinc finger domain A2L_zn_ribbon PF08792.10 gi|433591301|ref|YP_007280797.1| - 3 7.7 10.3 8.6 6.2 0.0 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain zf-HYPF PF07503.12 gi|433591301|ref|YP_007280797.1| - 6.9 6.5 8.4 20 5.1 0.1 3.5 3 0 0 3 3 3 0 HypF finger PHD PF00628.29 gi|433591301|ref|YP_007280797.1| - 7.9 6.5 10.6 2.5 8.1 1.2 2.6 2 1 0 2 2 2 0 PHD-finger zinc-ribbons_6 PF07191.12 gi|433591301|ref|YP_007280797.1| - 9.4 6.3 9.2 19 5.3 1.5 2.5 2 1 0 2 2 2 0 zinc-ribbons UPF0547 PF10571.9 gi|433591301|ref|YP_007280797.1| - 9.4 6.4 8.1 42 4.3 0.2 3.3 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 RHH_1 PF01402.21 gi|433591303|ref|YP_007280799.1| - 0.017 15.0 0.4 0.024 14.6 0.4 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family ATPase PF06745.13 gi|433591304|ref|YP_007280800.1| - 5.8e-07 29.1 0.0 0.0014 18.0 0.0 2.4 2 1 0 2 2 2 2 KaiC Rad51 PF08423.11 gi|433591304|ref|YP_007280800.1| - 1.7e-05 24.2 0.0 0.00043 19.6 0.0 2.1 2 0 0 2 2 2 1 Rad51 AAA_25 PF13481.6 gi|433591304|ref|YP_007280800.1| - 0.0013 18.4 2.8 0.012 15.2 0.2 2.3 2 0 0 2 2 2 2 AAA domain GHMP_kinases_N PF00288.26 gi|433591305|ref|YP_007280801.1| - 2.4e-05 24.5 0.4 5.7e-05 23.3 0.4 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|433591305|ref|YP_007280801.1| - 0.0011 19.2 0.1 0.0023 18.3 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal ILVD_EDD PF00920.21 gi|433591307|ref|YP_007280803.1| - 7.2e-196 651.8 5.3 8.2e-196 651.6 5.3 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|433591307|ref|YP_007280803.1| - 0.043 13.9 0.3 1.8 8.7 0.0 2.4 2 0 0 2 2 2 0 DGC domain CTP_transf_like PF01467.26 gi|433591309|ref|YP_007280805.1| - 1.8e-17 63.9 0.1 2e-17 63.7 0.1 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|433591309|ref|YP_007280805.1| - 0.03 14.2 0.1 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 FAD synthetase Prok-JAB PF14464.6 gi|433591310|ref|YP_007280806.1| - 1.2e-08 34.7 0.0 1.7e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|433591310|ref|YP_007280806.1| - 0.013 15.4 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain JAB PF01398.21 gi|433591310|ref|YP_007280806.1| - 0.16 12.0 0.0 0.57 10.2 0.0 1.8 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease CagD PF16567.5 gi|433591310|ref|YP_007280806.1| - 0.18 11.5 0.0 0.35 10.6 0.0 1.4 2 0 0 2 2 2 0 Pathogenicity island component CagD PQQ_2 PF13360.6 gi|433591311|ref|YP_007280807.1| - 6e-36 124.2 49.1 2.8e-15 56.5 8.5 3.3 1 1 3 4 4 4 4 PQQ-like domain PQQ_3 PF13570.6 gi|433591311|ref|YP_007280807.1| - 3.7e-16 59.1 22.4 0.0011 19.4 0.1 7.3 8 0 0 8 8 8 5 PQQ-like domain PQQ PF01011.21 gi|433591311|ref|YP_007280807.1| - 4e-07 29.6 13.2 0.0022 17.8 0.0 6.4 7 1 0 7 7 7 2 PQQ enzyme repeat RHS_repeat PF05593.14 gi|433591311|ref|YP_007280807.1| - 0.002 18.6 1.0 0.015 15.8 0.0 3.1 2 0 0 2 2 2 1 RHS Repeat Kelch_6 PF13964.6 gi|433591311|ref|YP_007280807.1| - 0.0072 16.6 0.4 6.1 7.3 0.0 4.5 3 1 2 5 5 5 1 Kelch motif DUF1391 PF07151.12 gi|433591311|ref|YP_007280807.1| - 0.11 12.4 1.3 3.7 7.4 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1391) PIN PF01850.21 gi|433591312|ref|YP_007280808.1| - 3e-08 34.2 2.0 3.1e-07 30.9 2.0 2.0 1 1 0 1 1 1 1 PIN domain Zn-ribbon_8 PF09723.10 gi|433591312|ref|YP_007280808.1| - 0.029 14.5 1.2 2.7 8.2 0.2 2.3 1 1 1 2 2 2 0 Zinc ribbon domain tRNA-synt_1g PF09334.11 gi|433591312|ref|YP_007280808.1| - 0.2 10.3 0.0 0.21 10.3 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (M) DUF2752 PF10825.8 gi|433591312|ref|YP_007280808.1| - 0.3 11.2 1.5 0.67 10.1 1.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2752) zinc_ribbon_2 PF13240.6 gi|433591312|ref|YP_007280808.1| - 0.94 9.3 3.5 8.7 6.2 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain MazE_antitoxin PF04014.18 gi|433591313|ref|YP_007280809.1| - 1.8e-09 37.3 0.1 2.7e-09 36.7 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|433591313|ref|YP_007280809.1| - 1.5e-05 25.3 0.0 2.1e-05 24.9 0.0 1.3 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin tRNA_anti-codon PF01336.25 gi|433591314|ref|YP_007280810.1| - 8.9e-10 38.4 0.0 1.8e-09 37.4 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|433591314|ref|YP_007280810.1| - 0.0007 19.8 0.0 0.0014 18.7 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|433591314|ref|YP_007280810.1| - 0.0064 16.7 0.5 0.013 15.7 0.5 1.5 1 0 0 1 1 1 1 DHH family S1 PF00575.23 gi|433591314|ref|YP_007280810.1| - 0.012 16.0 1.9 0.028 14.8 0.2 2.4 2 0 0 2 2 2 0 S1 RNA binding domain TOBE_2 PF08402.10 gi|433591314|ref|YP_007280810.1| - 0.082 13.1 0.7 0.34 11.1 0.7 2.1 1 0 0 1 1 1 0 TOBE domain S1_2 PF13509.6 gi|433591314|ref|YP_007280810.1| - 0.099 12.7 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 S1 domain MaoC_dehydrat_N PF13452.6 gi|433591315|ref|YP_007280811.1| - 1.4e-07 31.7 0.0 4.4e-06 26.9 0.0 2.0 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.19 gi|433591315|ref|YP_007280811.1| - 6.6e-05 22.5 0.1 0.00088 18.8 0.1 2.1 1 1 0 1 1 1 1 MaoC like domain 4HBT PF03061.22 gi|433591315|ref|YP_007280811.1| - 0.076 13.4 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Thioesterase superfamily DUF4442 PF14539.6 gi|433591315|ref|YP_007280811.1| - 0.13 12.4 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) Prok-RING_1 PF14446.6 gi|433591316|ref|YP_007280812.1| - 0.0016 18.3 1.0 0.0019 18.1 1.0 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|433591316|ref|YP_007280812.1| - 0.0057 16.2 3.0 0.0091 15.5 3.0 1.4 1 1 0 1 1 1 1 TFIIB zinc-binding TackOD1 PF18551.1 gi|433591316|ref|YP_007280812.1| - 0.012 15.3 0.1 0.013 15.2 0.1 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DZR PF12773.7 gi|433591316|ref|YP_007280812.1| - 0.013 15.6 0.6 0.014 15.4 0.6 1.1 1 0 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|433591316|ref|YP_007280812.1| - 0.015 15.0 1.8 2.1 8.2 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-Mss51 PF13824.6 gi|433591316|ref|YP_007280812.1| - 0.029 14.4 3.6 0.3 11.2 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-UBR PF02207.20 gi|433591316|ref|YP_007280812.1| - 0.03 14.5 0.2 0.032 14.4 0.2 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) PhnA_Zn_Ribbon PF08274.12 gi|433591316|ref|YP_007280812.1| - 0.033 14.1 2.1 1 9.4 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc-ribbons_6 PF07191.12 gi|433591316|ref|YP_007280812.1| - 0.036 14.0 0.3 0.042 13.8 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|433591316|ref|YP_007280812.1| - 0.04 13.8 2.0 0.79 9.7 2.1 2.2 1 1 0 1 1 1 0 Nudix N-terminal zf-C2H2 PF00096.26 gi|433591316|ref|YP_007280812.1| - 0.076 13.5 2.4 4.8 7.8 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf_UBZ PF18439.1 gi|433591316|ref|YP_007280812.1| - 0.14 11.8 1.9 9.6 5.9 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-H2C2_2 PF13465.6 gi|433591316|ref|YP_007280812.1| - 0.21 12.1 1.0 7.7 7.1 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Rubredoxin_2 PF18073.1 gi|433591316|ref|YP_007280812.1| - 0.32 10.8 4.1 2.2 8.1 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|433591316|ref|YP_007280812.1| - 0.43 10.7 4.0 2 8.6 4.0 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 HhH-GPD PF00730.25 gi|433591318|ref|YP_007280814.1| - 4.7e-14 52.8 0.0 6.6e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|433591318|ref|YP_007280814.1| - 7.4e-10 38.2 0.0 1.5e-09 37.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HTH_10 PF04967.12 gi|433591319|ref|YP_007280815.1| - 1.6e-17 63.0 0.0 2.5e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|433591319|ref|YP_007280815.1| - 0.001 18.9 0.1 0.0068 16.3 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|433591319|ref|YP_007280815.1| - 0.0053 16.8 0.1 0.014 15.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0122 PF04297.14 gi|433591319|ref|YP_007280815.1| - 0.027 14.7 0.1 0.42 10.9 0.0 2.1 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_3 PF01381.22 gi|433591319|ref|YP_007280815.1| - 0.031 14.3 0.0 0.071 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_24 PF13412.6 gi|433591319|ref|YP_007280815.1| - 0.068 12.8 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|433591319|ref|YP_007280815.1| - 0.2 11.6 0.1 0.7 9.9 0.0 1.9 1 1 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|433591320|ref|YP_007280816.1| - 0.093 12.6 1.0 0.33 10.8 0.1 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain SpoIIM PF01944.17 gi|433591320|ref|YP_007280816.1| - 0.56 10.2 3.8 0.76 9.8 3.8 1.1 1 0 0 1 1 1 0 Stage II sporulation protein M DUF3267 PF11667.8 gi|433591321|ref|YP_007280817.1| - 0.022 15.0 0.6 0.084 13.2 0.6 1.9 1 1 0 1 1 1 0 Putative zincin peptidase FA_desaturase PF00487.24 gi|433591321|ref|YP_007280817.1| - 0.4 10.5 8.1 0.66 9.8 1.8 2.0 1 1 1 2 2 2 0 Fatty acid desaturase Acetyltransf_1 PF00583.25 gi|433591322|ref|YP_007280818.1| - 5.9e-14 52.3 0.2 1e-13 51.5 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|433591322|ref|YP_007280818.1| - 2.1e-13 50.7 0.0 2.7e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|433591322|ref|YP_007280818.1| - 9.1e-08 32.4 0.0 2e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|433591322|ref|YP_007280818.1| - 2.5e-07 31.5 0.1 3.7e-07 30.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433591322|ref|YP_007280818.1| - 2.3e-06 27.5 0.0 4.6e-06 26.6 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|433591322|ref|YP_007280818.1| - 0.0011 19.0 0.1 0.0025 17.9 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_20 PF12840.7 gi|433591322|ref|YP_007280818.1| - 0.023 14.7 0.0 0.054 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Acetyltransf_CG PF14542.6 gi|433591322|ref|YP_007280818.1| - 0.028 14.6 0.0 0.059 13.5 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase HTH_24 PF13412.6 gi|433591322|ref|YP_007280818.1| - 0.081 12.5 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MMR_HSR1_C PF08438.10 gi|433591323|ref|YP_007280819.1| - 6.7e-29 100.7 0.0 1.1e-28 100.1 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|433591323|ref|YP_007280819.1| - 7e-20 71.2 0.0 4.7e-19 68.6 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|433591323|ref|YP_007280819.1| - 1.4e-11 44.3 0.0 3e-11 43.2 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|433591323|ref|YP_007280819.1| - 5.3e-10 39.0 0.1 4e-07 29.7 0.0 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|433591323|ref|YP_007280819.1| - 0.032 13.8 0.1 0.89 9.1 0.0 2.8 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain zf-RRN7 PF11781.8 gi|433591325|ref|YP_007280821.1| - 0.24 11.1 8.1 0.35 10.6 8.1 1.3 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PhnA_Zn_Ribbon PF08274.12 gi|433591325|ref|YP_007280821.1| - 0.27 11.2 5.5 0.4 10.7 5.5 1.2 1 0 0 1 1 1 0 PhnA Zinc-Ribbon UbiA PF01040.18 gi|433591326|ref|YP_007280822.1| - 4.3e-08 32.8 27.5 7.1e-08 32.1 27.0 1.7 1 1 0 1 1 1 1 UbiA prenyltransferase family TPP_enzyme_N PF02776.18 gi|433591327|ref|YP_007280823.1| - 5.3e-46 156.4 0.3 1.2e-44 152.0 0.0 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|433591327|ref|YP_007280823.1| - 5e-24 84.8 0.0 1.1e-23 83.7 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|433591327|ref|YP_007280823.1| - 2.6e-21 75.8 0.1 7e-21 74.4 0.1 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain HisKA_7TM PF16927.5 gi|433591328|ref|YP_007280824.1| - 3.2e-47 161.4 17.5 4.2e-47 161.0 17.5 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HisKA PF00512.25 gi|433591328|ref|YP_007280824.1| - 9.5e-15 54.4 0.1 9.5e-15 54.4 0.1 2.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 gi|433591328|ref|YP_007280824.1| - 3.9e-11 43.5 0.8 1.6e-10 41.5 0.2 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|433591328|ref|YP_007280824.1| - 2.4e-10 40.6 1.4 3.6e-10 40.1 0.4 1.9 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|433591328|ref|YP_007280824.1| - 6.7e-08 32.5 0.0 1.4e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|433591328|ref|YP_007280824.1| - 7.9e-06 26.1 0.0 1.4e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|433591328|ref|YP_007280824.1| - 0.0005 20.0 0.2 0.0016 18.4 0.2 1.9 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|433591328|ref|YP_007280824.1| - 0.0014 18.8 0.1 0.0049 17.0 0.1 2.0 1 1 0 1 1 1 1 PAS fold TrkH PF02386.16 gi|433591329|ref|YP_007280825.1| - 1.3e-61 208.6 9.5 2.1e-61 207.9 9.5 1.2 1 0 0 1 1 1 1 Cation transport protein TssO PF17561.2 gi|433591329|ref|YP_007280825.1| - 1 9.4 2.2 0.85 9.7 0.3 1.8 2 0 0 2 2 2 0 Type VI secretion system, TssO FAD-oxidase_C PF02913.19 gi|433591331|ref|YP_007280827.1| - 1.1e-54 185.7 0.1 1.4e-54 185.4 0.1 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|433591331|ref|YP_007280827.1| - 8.5e-39 132.5 0.4 1.4e-38 131.8 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain PhoD PF09423.10 gi|433591332|ref|YP_007280828.1| - 4.2e-81 272.7 5.0 5.2e-81 272.4 5.0 1.1 1 0 0 1 1 1 1 PhoD-like phosphatase PhoD_N PF16655.5 gi|433591332|ref|YP_007280828.1| - 4.4e-22 78.4 0.2 1e-21 77.2 0.2 1.7 1 0 0 1 1 1 1 PhoD-like phosphatase, N-terminal domain Pur_ac_phosph_N PF16656.5 gi|433591332|ref|YP_007280828.1| - 0.0031 18.1 0.1 0.0076 16.8 0.1 1.6 1 0 0 1 1 1 1 Purple acid Phosphatase, N-terminal domain Metallophos PF00149.28 gi|433591332|ref|YP_007280828.1| - 0.075 13.5 2.6 1.9 8.9 0.1 2.8 2 1 1 3 3 3 0 Calcineurin-like phosphoesterase DDE_Tnp_1 PF01609.21 gi|433591333|ref|YP_007280829.1| - 2.5e-21 76.3 0.0 3.7e-21 75.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain Bac_luciferase PF00296.20 gi|433591334|ref|YP_007280830.1| - 2.6e-62 211.0 4.6 3.3e-62 210.7 4.6 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase RHH_5 PF07878.11 gi|433591334|ref|YP_007280830.1| - 0.026 14.4 1.9 2.3 8.2 0.1 3.5 4 0 0 4 4 4 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 YfdX PF10938.8 gi|433591335|ref|YP_007280831.1| - 0.013 15.4 0.1 0.021 14.7 0.1 1.3 1 0 0 1 1 1 0 YfdX protein ADH_zinc_N_2 PF13602.6 gi|433591336|ref|YP_007280832.1| - 5.3e-16 59.9 0.3 9.4e-16 59.1 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|433591336|ref|YP_007280832.1| - 1.1e-14 54.6 0.3 2e-14 53.7 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|433591336|ref|YP_007280832.1| - 3.8e-10 39.6 0.1 9.7e-09 35.1 0.0 2.2 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 gi|433591336|ref|YP_007280832.1| - 0.012 15.5 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase YbjQ_1 PF01906.17 gi|433591337|ref|YP_007280833.1| - 4.1e-34 117.3 1.7 4.6e-34 117.2 1.7 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.6 gi|433591337|ref|YP_007280833.1| - 0.028 14.8 0.1 0.05 14.0 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) Aminotran_1_2 PF00155.21 gi|433591338|ref|YP_007280834.1| - 1.8e-61 208.3 0.0 2e-61 208.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|433591338|ref|YP_007280834.1| - 9.5e-13 48.2 0.1 1.7e-12 47.4 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|433591338|ref|YP_007280834.1| - 2e-09 37.2 0.0 3.1e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|433591338|ref|YP_007280834.1| - 2.5e-06 26.3 0.0 3.5e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|433591338|ref|YP_007280834.1| - 3.5e-05 22.9 0.0 4.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.21 gi|433591338|ref|YP_007280834.1| - 0.05 12.3 0.1 0.083 11.5 0.1 1.2 1 0 0 1 1 1 0 Aminotransferase class-III TAT_signal PF10518.9 gi|433591339|ref|YP_007280835.1| - 0.044 13.6 1.4 0.044 13.6 1.4 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence TPP_enzyme_C PF02775.21 gi|433591340|ref|YP_007280836.1| - 4.1e-32 111.1 0.4 6.2e-32 110.5 0.4 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|433591340|ref|YP_007280836.1| - 9.6e-19 67.3 2.1 1.2e-18 67.0 0.9 1.8 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|433591341|ref|YP_007280837.1| - 9.4e-58 195.7 0.7 1.4e-57 195.1 0.7 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|433591341|ref|YP_007280837.1| - 4.2e-43 147.4 0.2 1e-42 146.2 0.2 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|433591341|ref|YP_007280837.1| - 4.7e-06 26.3 0.2 1.1e-05 25.2 0.2 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|433591341|ref|YP_007280837.1| - 0.0014 18.9 0.0 0.0032 17.8 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|433591341|ref|YP_007280837.1| - 0.0026 17.6 0.0 0.0061 16.4 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain FAD_binding_6 PF00970.24 gi|433591342|ref|YP_007280838.1| - 3.6e-12 46.5 0.0 4.8e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain PALP PF00291.25 gi|433591342|ref|YP_007280838.1| - 5.9e-05 22.6 0.8 7.6e-05 22.3 0.8 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ATPgrasp_N PF18130.1 gi|433591342|ref|YP_007280838.1| - 0.014 15.9 4.2 0.023 15.2 4.2 1.3 1 0 0 1 1 1 0 ATP-grasp N-terminal domain FBPase_glpX PF03320.13 gi|433591342|ref|YP_007280838.1| - 0.046 12.6 0.3 0.046 12.6 0.3 1.4 2 0 0 2 2 2 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Peripla_BP_4 PF13407.6 gi|433591342|ref|YP_007280838.1| - 0.07 12.7 3.4 0.075 12.6 1.4 1.8 1 1 0 1 1 1 0 Periplasmic binding protein domain Glyoxalase_4 PF13669.6 gi|433591344|ref|YP_007280840.1| - 3.4e-17 62.7 0.1 4e-17 62.4 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|433591344|ref|YP_007280840.1| - 1.2e-13 51.4 0.3 1.3e-13 51.2 0.3 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|433591344|ref|YP_007280840.1| - 8.3e-07 29.3 0.8 9.3e-07 29.1 0.8 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|433591344|ref|YP_007280840.1| - 0.0006 20.6 0.1 0.00077 20.2 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain NAD_binding_8 PF13450.6 gi|433591344|ref|YP_007280840.1| - 0.053 13.8 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain MM_CoA_mutase PF01642.22 gi|433591345|ref|YP_007280841.1| - 8.7e-230 763.6 1.3 1.1e-229 763.3 1.3 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Acetyltransf_1 PF00583.25 gi|433591348|ref|YP_007280844.1| - 1.1e-08 35.3 0.1 1.9e-08 34.5 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 gi|433591348|ref|YP_007280844.1| - 0.0002 21.4 0.0 0.00037 20.6 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.7 gi|433591348|ref|YP_007280844.1| - 0.00023 21.5 0.1 0.00033 21.0 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433591348|ref|YP_007280844.1| - 0.0013 18.7 0.0 0.0018 18.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|433591348|ref|YP_007280844.1| - 0.0014 19.3 0.1 0.0021 18.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Peptidase_M48 PF01435.18 gi|433591349|ref|YP_007280845.1| - 1.3e-26 93.6 0.1 2.1e-25 89.6 0.1 2.1 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|433591349|ref|YP_007280845.1| - 6.2e-06 25.6 0.0 1.5e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|433591349|ref|YP_007280845.1| - 0.07 13.0 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 SprT-like family HAD_2 PF13419.6 gi|433591351|ref|YP_007280847.1| - 3.6e-16 59.7 0.0 4.5e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433591351|ref|YP_007280847.1| - 1.6e-08 34.5 0.3 3e-08 33.6 0.3 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|433591351|ref|YP_007280847.1| - 1.4e-07 32.0 0.1 3.6e-07 30.7 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433591351|ref|YP_007280847.1| - 1.6e-06 28.6 0.3 2.1e-06 28.3 0.3 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|433591351|ref|YP_007280847.1| - 0.14 11.5 0.0 4.2 6.7 0.0 2.7 1 1 1 2 2 2 0 Putative Phosphatase AFOR_C PF01314.18 gi|433591352|ref|YP_007280848.1| - 3.7e-77 259.9 0.4 7.2e-77 258.9 0.4 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|433591352|ref|YP_007280848.1| - 3.9e-55 186.8 0.0 6.4e-55 186.1 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.20 gi|433591353|ref|YP_007280849.1| - 6.3e-09 36.4 0.1 8.5e-09 35.9 0.1 1.2 1 0 0 1 1 1 1 ThiS family MFS_1 PF07690.16 gi|433591354|ref|YP_007280850.1| - 8.1e-43 146.7 51.2 1.7e-40 139.1 35.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|433591354|ref|YP_007280850.1| - 0.005 16.2 33.2 0.011 15.1 16.9 2.9 2 1 0 2 2 2 2 Uncharacterised MFS-type transporter YbfB DAO PF01266.24 gi|433591355|ref|YP_007280851.1| - 8.4e-44 150.6 3.9 1.1e-43 150.2 3.9 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.26 gi|433591355|ref|YP_007280851.1| - 4.2e-15 55.4 0.1 9.4e-15 54.3 0.1 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Amino_oxidase PF01593.24 gi|433591355|ref|YP_007280851.1| - 1.9e-06 27.5 0.5 0.00076 18.9 0.2 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 gi|433591355|ref|YP_007280851.1| - 4.6e-06 26.0 2.5 7.9e-06 25.2 2.5 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|433591355|ref|YP_007280851.1| - 7.8e-06 26.0 1.3 5.6e-05 23.3 1.1 2.7 3 1 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|433591355|ref|YP_007280851.1| - 2e-05 24.0 0.3 0.0011 18.4 0.3 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|433591355|ref|YP_007280851.1| - 0.0001 21.6 0.1 0.00033 20.0 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|433591355|ref|YP_007280851.1| - 0.00027 20.3 0.1 0.00038 19.8 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|433591355|ref|YP_007280851.1| - 0.0011 17.8 0.1 0.0057 15.4 0.2 1.8 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|433591355|ref|YP_007280851.1| - 0.0027 17.1 1.2 0.0044 16.4 1.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|433591355|ref|YP_007280851.1| - 0.0051 17.3 0.3 0.0051 17.3 0.3 1.7 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|433591355|ref|YP_007280851.1| - 0.087 12.1 0.3 0.15 11.3 0.3 1.3 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 gi|433591355|ref|YP_007280851.1| - 0.11 11.5 0.9 0.19 10.8 0.9 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A AMP-binding PF00501.28 gi|433591356|ref|YP_007280852.1| - 0.00068 18.3 0.0 0.016 13.8 0.0 2.0 2 0 0 2 2 2 2 AMP-binding enzyme DJ-1_PfpI PF01965.24 gi|433591357|ref|YP_007280853.1| - 2.7e-51 173.6 0.0 3.2e-51 173.4 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|433591357|ref|YP_007280853.1| - 0.0014 18.5 0.0 0.0017 18.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|433591357|ref|YP_007280853.1| - 0.013 15.2 0.1 0.11 12.1 0.0 2.2 1 1 1 2 2 2 0 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|433591357|ref|YP_007280853.1| - 0.021 14.4 0.0 0.05 13.2 0.0 1.6 1 1 1 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain SnoaL_3 PF13474.6 gi|433591357|ref|YP_007280853.1| - 0.12 12.6 0.1 0.28 11.4 0.0 1.6 2 0 0 2 2 2 0 SnoaL-like domain Catalase_C PF18011.1 gi|433591357|ref|YP_007280853.1| - 0.16 11.6 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 C-terminal domain found in long catalases DnaJ_C PF01556.18 gi|433591358|ref|YP_007280854.1| - 1.7e-43 148.2 0.0 2.4e-43 147.7 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|433591358|ref|YP_007280854.1| - 1.7e-25 88.9 2.9 3.5e-25 87.9 2.9 1.6 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|433591358|ref|YP_007280854.1| - 1.6e-12 47.6 17.1 3.2e-12 46.6 17.1 1.6 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|433591358|ref|YP_007280854.1| - 0.0011 18.9 17.4 0.0083 16.1 3.8 2.5 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein DUF5351 PF17302.2 gi|433591358|ref|YP_007280854.1| - 0.13 12.4 24.2 0.85 9.9 1.2 4.5 4 0 0 4 4 4 0 Family of unknown function (DUF5351) DZR PF12773.7 gi|433591358|ref|YP_007280854.1| - 0.48 10.5 11.6 1.3 9.2 11.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF2318 PF10080.9 gi|433591358|ref|YP_007280854.1| - 0.51 10.5 5.7 1.9 8.6 0.9 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) TackOD1 PF18551.1 gi|433591358|ref|YP_007280854.1| - 4.7 6.8 7.2 0.99 9.0 0.8 2.3 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 UPF0254 PF06787.11 gi|433591359|ref|YP_007280855.1| - 0.012 15.3 0.3 0.056 13.2 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) Alkyl_sulf_C PF14864.6 gi|433591359|ref|YP_007280855.1| - 0.063 13.6 0.1 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 Alkyl sulfatase C-terminal HSP70 PF00012.20 gi|433591360|ref|YP_007280856.1| - 1.1e-242 806.6 17.5 1.1e-240 799.9 17.5 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|433591360|ref|YP_007280856.1| - 2e-18 66.3 0.2 2e-18 66.3 0.2 2.0 2 0 0 2 2 2 1 MreB/Mbl protein StbA PF06406.11 gi|433591360|ref|YP_007280856.1| - 0.0045 16.3 0.0 0.019 14.2 0.0 2.0 2 0 0 2 2 2 1 StbA protein Pro_dh PF01619.18 gi|433591360|ref|YP_007280856.1| - 0.056 13.0 0.0 0.056 13.0 0.0 2.5 3 0 0 3 3 3 0 Proline dehydrogenase PapD_N PF00345.20 gi|433591360|ref|YP_007280856.1| - 0.091 12.7 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Pili and flagellar-assembly chaperone, PapD N-terminal domain Fib_alpha PF08702.10 gi|433591360|ref|YP_007280856.1| - 0.28 11.4 9.0 0.8 9.9 9.0 1.7 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family GrpE PF01025.19 gi|433591361|ref|YP_007280857.1| - 2.1e-44 151.1 9.0 2.1e-44 151.1 9.0 2.3 1 1 1 2 2 2 1 GrpE Exonuc_VII_L PF02601.15 gi|433591361|ref|YP_007280857.1| - 3e-05 23.7 7.5 4.1e-05 23.3 7.5 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit Atg14 PF10186.9 gi|433591361|ref|YP_007280857.1| - 8.1e-05 21.9 12.0 0.00012 21.3 12.0 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 DUF812 PF05667.11 gi|433591361|ref|YP_007280857.1| - 0.00059 18.9 14.2 0.00075 18.5 14.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) IFT57 PF10498.9 gi|433591361|ref|YP_007280857.1| - 0.0013 17.7 4.7 0.0013 17.7 4.7 3.8 2 1 2 4 4 3 1 Intra-flagellar transport protein 57 Lebercilin PF15619.6 gi|433591361|ref|YP_007280857.1| - 0.003 17.3 22.6 0.012 15.3 21.8 2.0 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease DUF948 PF06103.11 gi|433591361|ref|YP_007280857.1| - 0.0037 17.5 4.0 0.4 11.0 0.6 2.8 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 gi|433591361|ref|YP_007280857.1| - 0.004 16.1 20.2 0.012 14.5 20.1 1.7 1 1 0 1 1 1 1 Spc7 kinetochore protein CAP_N PF01213.19 gi|433591361|ref|YP_007280857.1| - 0.0049 16.4 7.2 0.0063 16.0 1.0 2.3 2 0 0 2 2 2 1 Adenylate cyclase associated (CAP) N terminal Bap31_Bap29_C PF18035.1 gi|433591361|ref|YP_007280857.1| - 0.0075 16.2 10.3 0.87 9.6 2.3 3.5 2 1 1 3 3 3 2 Bap31/Bap29 cytoplasmic coiled-coil domain DHR10 PF18595.1 gi|433591361|ref|YP_007280857.1| - 0.0091 16.1 20.2 0.0091 16.1 20.2 2.3 1 1 1 2 2 2 1 Designed helical repeat protein 10 domain Mce4_CUP1 PF11887.8 gi|433591361|ref|YP_007280857.1| - 0.014 14.9 1.6 0.021 14.3 0.4 1.7 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative Med9 PF07544.13 gi|433591361|ref|YP_007280857.1| - 0.024 14.7 14.4 0.051 13.7 0.8 3.1 2 1 1 3 3 2 0 RNA polymerase II transcription mediator complex subunit 9 HIP1_clath_bdg PF16515.5 gi|433591361|ref|YP_007280857.1| - 0.025 15.2 21.0 0.29 11.8 10.0 2.5 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 YabA PF06156.13 gi|433591361|ref|YP_007280857.1| - 0.026 15.2 9.8 0.98 10.1 6.8 3.0 1 1 2 3 3 3 0 Initiation control protein YabA DUF4795 PF16043.5 gi|433591361|ref|YP_007280857.1| - 0.026 14.1 14.7 0.04 13.5 14.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) CHASE6_C PF17150.4 gi|433591361|ref|YP_007280857.1| - 0.029 15.0 5.2 0.98 10.1 0.1 2.6 1 1 1 2 2 2 0 C-terminal domain of two-partite extracellular sensor domain MAD PF05557.13 gi|433591361|ref|YP_007280857.1| - 0.03 12.7 19.6 0.046 12.1 19.6 1.2 1 0 0 1 1 1 0 Mitotic checkpoint protein Fib_alpha PF08702.10 gi|433591361|ref|YP_007280857.1| - 0.032 14.4 14.0 0.11 12.7 0.9 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Baculo_PEP_C PF04513.12 gi|433591361|ref|YP_007280857.1| - 0.033 14.2 5.0 0.33 11.0 2.7 2.8 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin-6_N PF09177.11 gi|433591361|ref|YP_007280857.1| - 0.035 14.7 15.5 0.049 14.2 5.5 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal HAUS6_N PF14661.6 gi|433591361|ref|YP_007280857.1| - 0.048 13.2 7.5 0.074 12.6 7.5 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus TACC_C PF05010.14 gi|433591361|ref|YP_007280857.1| - 0.063 13.1 14.6 0.072 12.9 13.6 1.5 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal AAA_13 PF13166.6 gi|433591361|ref|YP_007280857.1| - 0.069 11.8 14.2 0.081 11.6 13.0 1.4 1 1 1 2 2 2 0 AAA domain DUF745 PF05335.13 gi|433591361|ref|YP_007280857.1| - 0.079 12.7 11.2 0.019 14.7 6.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF745) UPF0242 PF06785.11 gi|433591361|ref|YP_007280857.1| - 0.084 13.0 22.8 0.27 11.3 22.1 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Golgin_A5 PF09787.9 gi|433591361|ref|YP_007280857.1| - 0.092 12.2 21.9 0.15 11.5 21.2 1.5 1 1 0 1 1 1 0 Golgin subfamily A member 5 ExsD PF16806.5 gi|433591361|ref|YP_007280857.1| - 0.1 12.5 3.5 0.17 11.8 3.5 1.4 1 0 0 1 1 1 0 Antiactivator protein ExsD MPS2 PF17060.5 gi|433591361|ref|YP_007280857.1| - 0.12 11.6 18.5 0.25 10.5 14.2 2.0 1 1 1 2 2 2 0 Monopolar spindle protein 2 NPV_P10 PF05531.12 gi|433591361|ref|YP_007280857.1| - 0.13 12.8 11.0 2.4 8.7 0.1 3.3 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein Csm1_N PF18504.1 gi|433591361|ref|YP_007280857.1| - 0.14 12.5 21.8 0.82 10.1 2.1 3.5 1 1 2 3 3 3 0 Csm1 N-terminal domain Prominin PF05478.11 gi|433591361|ref|YP_007280857.1| - 0.14 10.1 4.3 0.25 9.3 4.3 1.3 1 0 0 1 1 1 0 Prominin ATG16 PF08614.11 gi|433591361|ref|YP_007280857.1| - 0.16 12.1 29.1 0.96 9.6 24.7 2.6 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Bacillus_HBL PF05791.11 gi|433591361|ref|YP_007280857.1| - 0.17 11.7 9.4 9.5 6.0 9.8 2.5 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) CENP-F_leu_zip PF10473.9 gi|433591361|ref|YP_007280857.1| - 0.18 11.8 24.0 0.089 12.8 14.8 2.3 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.8 gi|433591361|ref|YP_007280857.1| - 0.22 9.0 22.4 0.29 8.6 22.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) HeLo PF14479.6 gi|433591361|ref|YP_007280857.1| - 0.28 11.0 10.1 0.44 10.4 10.1 1.3 1 0 0 1 1 1 0 Prion-inhibition and propagation SKA1 PF07160.12 gi|433591361|ref|YP_007280857.1| - 0.31 10.8 11.8 0.26 11.1 8.9 2.3 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 GAS PF13851.6 gi|433591361|ref|YP_007280857.1| - 0.32 10.3 20.1 0.27 10.5 17.5 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding HAUS-augmin3 PF14932.6 gi|433591361|ref|YP_007280857.1| - 0.33 10.5 16.1 0.29 10.7 12.3 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 FlaC_arch PF05377.11 gi|433591361|ref|YP_007280857.1| - 0.35 11.3 14.5 7.4 7.0 0.6 3.7 2 2 1 3 3 3 0 Flagella accessory protein C (FlaC) SlyX PF04102.12 gi|433591361|ref|YP_007280857.1| - 0.4 11.3 17.3 1.7 9.3 13.2 3.4 1 1 1 2 2 2 0 SlyX ZapB PF06005.12 gi|433591361|ref|YP_007280857.1| - 0.43 11.1 19.5 0.055 13.9 12.8 2.7 1 1 3 4 4 3 0 Cell division protein ZapB Phage_GP20 PF06810.11 gi|433591361|ref|YP_007280857.1| - 0.52 10.1 18.4 0.036 13.9 3.6 3.1 1 1 2 3 3 3 0 Phage minor structural protein GP20 Mod_r PF07200.13 gi|433591361|ref|YP_007280857.1| - 0.65 10.1 17.3 3.3 7.8 17.2 2.1 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein V_ATPase_I PF01496.19 gi|433591361|ref|YP_007280857.1| - 0.65 7.8 10.2 1 7.2 10.2 1.4 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Macoilin PF09726.9 gi|433591361|ref|YP_007280857.1| - 0.71 8.4 11.7 0.99 7.9 11.7 1.3 1 0 0 1 1 1 0 Macoilin family ADIP PF11559.8 gi|433591361|ref|YP_007280857.1| - 0.8 9.8 16.6 0.92 9.6 15.1 1.8 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding ERM PF00769.19 gi|433591361|ref|YP_007280857.1| - 0.82 9.4 24.7 1.3 8.7 24.2 1.8 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Fez1 PF06818.15 gi|433591361|ref|YP_007280857.1| - 0.84 10.1 18.9 1.3 9.4 18.5 1.5 1 1 0 1 1 1 0 Fez1 Rho_Binding PF08912.11 gi|433591361|ref|YP_007280857.1| - 0.87 10.5 18.5 8.2 7.3 4.9 3.7 1 1 3 4 4 4 0 Rho Binding DCB PF16213.5 gi|433591361|ref|YP_007280857.1| - 0.91 9.2 3.8 0.31 10.7 1.0 1.6 2 0 0 2 2 1 0 Dimerisation and cyclophilin-binding domain of Mon2 TMPIT PF07851.13 gi|433591361|ref|YP_007280857.1| - 0.95 8.6 12.2 0.27 10.5 1.0 2.0 1 1 1 2 2 2 0 TMPIT-like protein DLP_helical PF18709.1 gi|433591361|ref|YP_007280857.1| - 1 8.5 14.0 0.55 9.4 6.7 2.3 1 1 1 2 2 2 0 Dynamin-like helical domain Cluap1 PF10234.9 gi|433591361|ref|YP_007280857.1| - 1.2 8.5 17.4 2.8 7.3 14.6 2.4 1 1 1 2 2 2 0 Clusterin-associated protein-1 DUF16 PF01519.16 gi|433591361|ref|YP_007280857.1| - 1.2 9.7 16.0 0.072 13.6 2.7 2.5 1 1 1 2 2 2 0 Protein of unknown function DUF16 FAM76 PF16046.5 gi|433591361|ref|YP_007280857.1| - 1.2 8.5 7.3 1.7 7.9 7.3 1.4 1 0 0 1 1 1 0 FAM76 protein BST2 PF16716.5 gi|433591361|ref|YP_007280857.1| - 1.2 9.8 13.9 0.35 11.5 2.5 2.9 1 1 3 4 4 3 0 Bone marrow stromal antigen 2 Ead_Ea22 PF13935.6 gi|433591361|ref|YP_007280857.1| - 1.2 9.7 27.6 1.2 9.8 11.0 3.4 2 1 1 3 3 2 0 Ead/Ea22-like protein Laminin_II PF06009.12 gi|433591361|ref|YP_007280857.1| - 1.3 9.0 12.4 0.56 10.2 2.0 2.6 1 1 2 3 3 3 0 Laminin Domain II Nup54 PF13874.6 gi|433591361|ref|YP_007280857.1| - 1.4 9.1 13.4 2 8.5 12.3 1.7 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Peptidase_S64 PF08192.11 gi|433591361|ref|YP_007280857.1| - 1.4 7.3 8.4 1.9 6.9 8.4 1.1 1 0 0 1 1 1 0 Peptidase family S64 Sipho_Gp157 PF05565.11 gi|433591361|ref|YP_007280857.1| - 1.5 8.8 13.3 3.3 7.7 13.0 1.8 1 1 0 1 1 1 0 Siphovirus Gp157 DIT1_PvcA PF05141.12 gi|433591361|ref|YP_007280857.1| - 1.5 8.2 7.1 0.25 10.7 3.2 1.6 2 0 0 2 2 2 0 Pyoverdine/dityrosine biosynthesis protein FUSC PF04632.12 gi|433591361|ref|YP_007280857.1| - 1.6 7.1 8.9 2.3 6.6 8.9 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF1664 PF07889.12 gi|433591361|ref|YP_007280857.1| - 1.8 8.6 11.8 1.3 9.1 1.3 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.8 gi|433591361|ref|YP_007280857.1| - 1.9 8.6 19.5 0.8 9.8 11.7 3.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF3552 PF12072.8 gi|433591361|ref|YP_007280857.1| - 2.1 7.8 28.2 1.5 8.2 20.9 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) DivIVA PF05103.13 gi|433591361|ref|YP_007280857.1| - 2.1 8.4 17.7 2.8 8.0 1.7 2.5 1 1 1 2 2 2 0 DivIVA protein APG6_N PF17675.1 gi|433591361|ref|YP_007280857.1| - 2.8 8.5 26.6 0.69 10.4 20.0 2.5 1 1 1 2 2 2 0 Apg6 coiled-coil region OmpH PF03938.14 gi|433591361|ref|YP_007280857.1| - 2.8 8.3 20.4 70 3.8 19.9 2.3 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) FapA PF03961.13 gi|433591361|ref|YP_007280857.1| - 3.3 6.2 15.3 0.33 9.5 2.4 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A Allexi_40kDa PF05549.11 gi|433591361|ref|YP_007280857.1| - 3.7 7.0 5.3 3.1 7.2 3.2 1.7 1 1 1 2 2 2 0 Allexivirus 40kDa protein Seryl_tRNA_N PF02403.22 gi|433591361|ref|YP_007280857.1| - 4 7.7 18.5 0.84 9.9 4.5 2.8 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain BRE1 PF08647.11 gi|433591361|ref|YP_007280857.1| - 4 7.6 19.9 3.4 7.8 1.4 2.4 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase TPR_MLP1_2 PF07926.12 gi|433591361|ref|YP_007280857.1| - 4.9 7.2 23.9 4.1 7.5 16.9 2.8 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein KxDL PF10241.9 gi|433591361|ref|YP_007280857.1| - 4.9 7.5 9.5 6.1 7.2 0.3 2.7 1 1 2 3 3 3 0 Uncharacterized conserved protein DUF3450 PF11932.8 gi|433591361|ref|YP_007280857.1| - 5.1 6.3 20.4 0.15 11.3 4.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Nsp1_C PF05064.13 gi|433591361|ref|YP_007280857.1| - 5.3 6.9 15.0 1.5 8.6 5.3 3.0 1 1 1 3 3 3 0 Nsp1-like C-terminal region Phage_GPO PF05929.11 gi|433591361|ref|YP_007280857.1| - 5.4 6.6 15.6 4.8 6.7 12.9 2.0 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF2203 PF09969.9 gi|433591361|ref|YP_007280857.1| - 6.1 7.6 15.1 0.49 11.1 4.3 2.7 1 1 2 3 3 2 0 Uncharacterized conserved protein (DUF2203) Het-C PF07217.11 gi|433591361|ref|YP_007280857.1| - 7.1 5.0 9.3 4.8 5.6 0.1 2.1 1 1 2 3 3 3 0 Heterokaryon incompatibility protein Het-C STAT_alpha PF01017.20 gi|433591361|ref|YP_007280857.1| - 8.4 6.3 12.9 10 5.9 11.4 1.8 1 1 1 2 2 2 0 STAT protein, all-alpha domain ING PF12998.7 gi|433591361|ref|YP_007280857.1| - 9.1 6.9 14.5 7.1 7.3 2.0 2.6 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Prefoldin_2 PF01920.20 gi|433591361|ref|YP_007280857.1| - 9.1 6.3 22.6 0.16 11.9 6.9 3.3 2 1 1 3 3 3 0 Prefoldin subunit ResIII PF04851.15 gi|433591362|ref|YP_007280858.1| - 4.6e-25 88.6 0.0 9.2e-25 87.6 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit XPB_DRD PF18458.1 gi|433591362|ref|YP_007280858.1| - 3.7e-19 68.4 0.5 9.3e-19 67.1 0.5 1.8 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain ERCC3_RAD25_C PF16203.5 gi|433591362|ref|YP_007280858.1| - 1.2e-18 67.3 0.0 1.7e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|433591362|ref|YP_007280858.1| - 4.4e-14 52.8 0.0 3e-13 50.1 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|433591362|ref|YP_007280858.1| - 1.3e-07 31.5 0.0 9.3e-07 28.8 0.0 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|433591362|ref|YP_007280858.1| - 0.00012 20.9 0.0 0.00049 18.9 0.0 2.0 2 1 0 2 2 2 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|433591362|ref|YP_007280858.1| - 0.027 14.7 0.0 0.39 11.0 0.0 2.7 2 1 0 2 2 2 0 AAA domain Helicase_C_2 PF13307.6 gi|433591362|ref|YP_007280858.1| - 0.051 13.7 0.0 14 5.8 0.0 2.7 3 0 0 3 3 3 0 Helicase C-terminal domain DUF2075 PF09848.9 gi|433591362|ref|YP_007280858.1| - 0.16 11.2 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DisA_N PF02457.16 gi|433591363|ref|YP_007280859.1| - 6e-05 22.6 0.0 0.00028 20.4 0.0 1.9 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding DUF790 PF05626.11 gi|433591364|ref|YP_007280860.1| - 1.3e-139 465.2 0.0 1.7e-139 464.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Ldh_1_N PF00056.23 gi|433591365|ref|YP_007280861.1| - 1.9e-13 50.7 0.0 3.6e-06 27.1 0.0 2.3 2 0 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|433591365|ref|YP_007280861.1| - 2.3e-11 43.9 0.0 3.5e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain DAO PF01266.24 gi|433591365|ref|YP_007280861.1| - 0.00061 19.5 1.7 0.0012 18.6 1.5 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase PALP PF00291.25 gi|433591365|ref|YP_007280861.1| - 0.0015 18.1 0.3 0.0045 16.4 0.3 1.7 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme Response_reg PF00072.24 gi|433591366|ref|YP_007280862.1| - 1.1e-18 67.5 0.0 1.4e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HisKA_7TM PF16927.5 gi|433591367|ref|YP_007280863.1| - 4.3e-14 53.1 12.6 6.2e-14 52.6 12.6 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HisKA PF00512.25 gi|433591367|ref|YP_007280863.1| - 4.1e-05 23.5 2.7 0.00011 22.2 0.5 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|433591367|ref|YP_007280863.1| - 0.016 15.4 0.0 0.049 13.9 0.0 1.9 1 0 0 1 1 1 0 PAS fold PNTB PF02233.16 gi|433591367|ref|YP_007280863.1| - 0.031 13.2 0.1 0.048 12.6 0.1 1.2 1 0 0 1 1 1 0 NAD(P) transhydrogenase beta subunit DUF4191 PF13829.6 gi|433591367|ref|YP_007280863.1| - 0.081 12.2 0.5 0.2 11.0 0.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF4386 PF14329.6 gi|433591367|ref|YP_007280863.1| - 3.6 7.4 14.6 0.55 10.1 9.8 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4386) Methyltranf_PUA PF13636.6 gi|433591368|ref|YP_007280864.1| - 3e-08 33.5 0.5 2.3e-07 30.7 0.5 2.1 1 1 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Methyltr_RsmB-F PF01189.17 gi|433591369|ref|YP_007280865.1| - 7.2e-53 179.2 0.0 9.4e-53 178.8 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|433591369|ref|YP_007280865.1| - 2.2e-05 24.9 0.0 8.1e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|433591369|ref|YP_007280865.1| - 0.0026 17.6 0.0 0.0043 16.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|433591369|ref|YP_007280865.1| - 0.034 14.3 0.0 0.055 13.6 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase PAC2 PF09754.9 gi|433591371|ref|YP_007280867.1| - 1.8e-40 139.2 0.0 2.2e-40 139.0 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF4570 PF15134.6 gi|433591371|ref|YP_007280867.1| - 0.047 13.7 0.7 0.098 12.7 0.5 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4570) kleA_kleC PF17383.2 gi|433591371|ref|YP_007280867.1| - 0.07 13.5 1.2 0.15 12.4 1.2 1.5 1 0 0 1 1 1 0 Uncharacterized KorC regulated protein A AstE_AspA PF04952.14 gi|433591372|ref|YP_007280868.1| - 2.7e-15 56.2 0.1 5.7e-15 55.1 0.1 1.4 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|433591372|ref|YP_007280868.1| - 0.0077 15.7 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic Glutaredoxin PF00462.24 gi|433591373|ref|YP_007280869.1| - 9.7e-18 64.2 0.1 1e-16 60.9 0.0 2.2 2 0 0 2 2 2 1 Glutaredoxin SH3BGR PF04908.15 gi|433591373|ref|YP_007280869.1| - 0.051 13.7 0.3 0.18 12.0 0.0 1.9 2 1 0 2 2 2 0 SH3-binding, glutamic acid-rich protein Abhydrolase_1 PF00561.20 gi|433591373|ref|YP_007280869.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 alpha/beta hydrolase fold Membralin PF09746.9 gi|433591374|ref|YP_007280870.1| - 0.12 11.4 0.1 0.13 11.3 0.1 1.1 1 0 0 1 1 1 0 Tumour-associated protein CRT10 PF08728.10 gi|433591374|ref|YP_007280870.1| - 0.14 10.3 0.1 0.16 10.1 0.1 1.0 1 0 0 1 1 1 0 CRT10 TAT_signal PF10518.9 gi|433591375|ref|YP_007280871.1| - 0.28 11.1 5.6 0.6 10.1 5.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SprB PF13573.6 gi|433591375|ref|YP_007280871.1| - 1.1 9.1 6.4 8.9 6.2 0.4 3.4 3 0 0 3 3 3 0 SprB repeat DUF2381 PF09544.10 gi|433591376|ref|YP_007280872.1| - 0.036 13.6 0.1 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2381) adh_short PF00106.25 gi|433591377|ref|YP_007280873.1| - 2.2e-54 183.9 0.0 2.5e-54 183.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|433591377|ref|YP_007280873.1| - 1.3e-45 155.8 0.2 3.6e-45 154.3 0.2 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|433591377|ref|YP_007280873.1| - 2.5e-11 43.8 0.1 3.3e-11 43.4 0.1 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|433591377|ref|YP_007280873.1| - 0.00048 20.1 1.0 0.00057 19.8 0.4 1.6 2 0 0 2 2 2 1 NAD(P)H-binding THF_DHG_CYH_C PF02882.19 gi|433591377|ref|YP_007280873.1| - 0.0068 15.7 0.1 0.011 15.1 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF1776 PF08643.10 gi|433591377|ref|YP_007280873.1| - 0.012 15.1 0.0 0.32 10.3 0.0 2.0 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 gi|433591377|ref|YP_007280873.1| - 0.014 14.9 0.2 0.031 13.7 0.2 1.7 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.26 gi|433591377|ref|YP_007280873.1| - 0.07 13.1 0.1 0.15 12.0 0.1 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase IlvN PF07991.12 gi|433591377|ref|YP_007280873.1| - 0.084 12.4 0.1 0.38 10.3 0.1 1.9 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|433591377|ref|YP_007280873.1| - 0.085 13.0 0.1 0.2 11.8 0.1 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|433591377|ref|YP_007280873.1| - 0.18 12.1 1.3 0.4 10.9 0.2 2.2 2 1 1 3 3 3 0 TrkA-N domain 3HCDH_N PF02737.18 gi|433591377|ref|YP_007280873.1| - 0.24 11.3 1.2 2.5 8.0 1.3 2.2 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GCS2 PF04107.13 gi|433591378|ref|YP_007280874.1| - 5.1e-14 52.3 0.4 8.6e-14 51.6 0.4 1.3 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) DUF4140 PF13600.6 gi|433591378|ref|YP_007280874.1| - 0.042 14.3 0.1 0.09 13.2 0.1 1.5 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) PAPS_reduct PF01507.19 gi|433591379|ref|YP_007280875.1| - 1.3e-17 64.4 0.0 2e-13 50.7 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|433591379|ref|YP_007280875.1| - 0.051 13.1 0.0 0.11 12.0 0.0 1.5 2 0 0 2 2 2 0 Diphthamide synthase PIRT PF15099.6 gi|433591380|ref|YP_007280876.1| - 0.67 9.5 2.0 0.87 9.2 2.0 1.1 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family SLATT_1 PF18181.1 gi|433591381|ref|YP_007280877.1| - 0.22 11.5 2.6 0.48 10.4 2.6 1.6 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 GPHR_N PF12537.8 gi|433591381|ref|YP_007280877.1| - 5 7.3 8.0 14 5.8 6.3 2.2 1 1 1 2 2 2 0 The Golgi pH Regulator (GPHR) Family N-terminal Aldo_ket_red PF00248.21 gi|433591382|ref|YP_007280878.1| - 6.2e-57 193.0 0.0 1.1e-54 185.7 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family HTH_Tnp_1 PF01527.20 gi|433591382|ref|YP_007280878.1| - 0.032 14.5 0.1 14 6.1 0.0 2.4 2 0 0 2 2 2 0 Transposase UPF0126 PF03458.13 gi|433591383|ref|YP_007280879.1| - 6.9e-34 115.6 29.2 4.5e-18 64.9 10.3 2.8 2 1 1 3 3 3 2 UPF0126 domain Amidase PF01425.21 gi|433591384|ref|YP_007280880.1| - 6.6e-101 338.5 1.1 7.7e-101 338.3 1.1 1.0 1 0 0 1 1 1 1 Amidase DUF309 PF03745.14 gi|433591385|ref|YP_007280881.1| - 9e-15 54.1 0.2 1.3e-14 53.6 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) C1_1 PF00130.22 gi|433591386|ref|YP_007280882.1| - 0.0019 18.1 1.0 0.0023 17.8 1.0 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|433591386|ref|YP_007280882.1| - 0.0024 17.9 0.7 0.0024 17.8 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon DUF2318 PF10080.9 gi|433591386|ref|YP_007280882.1| - 0.0025 17.9 0.6 0.0026 17.8 0.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) zf-RRN7 PF11781.8 gi|433591386|ref|YP_007280882.1| - 0.0056 16.3 3.3 0.0056 16.3 3.3 1.5 1 1 1 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-C2H2_11 PF16622.5 gi|433591386|ref|YP_007280882.1| - 0.01 15.6 2.5 0.48 10.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger C2H2-type Rep_fac-A_C PF08646.10 gi|433591386|ref|YP_007280882.1| - 0.024 14.4 0.9 0.027 14.2 0.9 1.0 1 0 0 1 1 1 0 Replication factor-A C terminal domain Zn-ribbon_8 PF09723.10 gi|433591386|ref|YP_007280882.1| - 0.043 13.9 3.2 1.5 9.0 0.4 2.1 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|433591386|ref|YP_007280882.1| - 0.049 13.7 0.8 0.049 13.7 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|433591386|ref|YP_007280882.1| - 0.059 13.3 3.9 0.072 13.1 3.9 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.26 gi|433591386|ref|YP_007280882.1| - 0.081 13.4 4.4 0.75 10.4 0.1 2.3 2 1 0 2 2 2 0 Zinc finger, C2H2 type Zn_ribbon_SprT PF17283.2 gi|433591386|ref|YP_007280882.1| - 0.095 12.6 8.8 0.29 11.1 1.2 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-HIT PF04438.16 gi|433591386|ref|YP_007280882.1| - 0.096 12.6 3.3 0.43 10.5 3.3 1.8 1 1 0 1 1 1 0 HIT zinc finger Cas_CXXC_CXXC PF09706.10 gi|433591386|ref|YP_007280882.1| - 0.16 12.2 4.6 1.3 9.3 0.5 2.0 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) Rubredoxin_2 PF18073.1 gi|433591386|ref|YP_007280882.1| - 0.17 11.6 8.6 0.76 9.6 1.3 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF983 PF06170.12 gi|433591386|ref|YP_007280882.1| - 0.23 11.9 3.2 1.2 9.6 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) DNA_RNApol_7kD PF03604.13 gi|433591386|ref|YP_007280882.1| - 0.48 10.2 6.7 1.1 9.0 1.6 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Inositol_P PF00459.25 gi|433591387|ref|YP_007280883.1| - 1.7e-51 175.3 1.6 2.2e-51 175.0 1.6 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|433591387|ref|YP_007280883.1| - 0.0071 15.8 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain PSII_Pbs27 PF13326.6 gi|433591387|ref|YP_007280883.1| - 0.1 12.9 0.1 0.45 10.8 0.1 1.8 2 0 0 2 2 2 0 Photosystem II Pbs27 DUF883 PF05957.13 gi|433591387|ref|YP_007280883.1| - 0.45 11.1 0.1 0.45 11.1 0.1 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF63 PF01889.17 gi|433591388|ref|YP_007280884.1| - 5.4e-33 115.3 13.1 2.1e-31 110.1 11.1 3.0 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 Nop PF01798.18 gi|433591389|ref|YP_007280885.1| - 2.8e-39 134.9 0.0 4.3e-39 134.3 0.0 1.3 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin Fibrillarin PF01269.17 gi|433591390|ref|YP_007280886.1| - 1.1e-55 188.2 0.0 1.5e-55 187.8 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin AMP-binding PF00501.28 gi|433591392|ref|YP_007280888.1| - 5.2e-109 364.6 0.0 6.1e-109 364.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433591392|ref|YP_007280888.1| - 5.4e-22 78.6 0.7 1.4e-21 77.2 0.2 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain GCS2 PF04107.13 gi|433591393|ref|YP_007280889.1| - 1.7e-76 257.4 0.3 2e-76 257.1 0.3 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.8 gi|433591393|ref|YP_007280889.1| - 0.057 13.1 0.1 9.1 5.9 0.0 2.3 2 0 0 2 2 2 0 Putative amidoligase enzyme GCS PF03074.16 gi|433591393|ref|YP_007280889.1| - 0.12 11.7 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase TrmB PF01978.19 gi|433591394|ref|YP_007280890.1| - 6.5e-08 32.4 0.1 1.1e-07 31.7 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|433591394|ref|YP_007280890.1| - 4.4e-06 26.2 0.0 6.9e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|433591394|ref|YP_007280890.1| - 0.011 15.4 0.1 0.024 14.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|433591394|ref|YP_007280890.1| - 0.011 15.5 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|433591394|ref|YP_007280890.1| - 0.015 15.2 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_20 PF12840.7 gi|433591394|ref|YP_007280890.1| - 0.034 14.2 0.5 0.095 12.8 0.0 2.0 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|433591394|ref|YP_007280890.1| - 0.11 12.9 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|433591394|ref|YP_007280890.1| - 0.13 12.2 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_9 PF08221.11 gi|433591394|ref|YP_007280890.1| - 0.23 11.6 0.0 0.37 10.9 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Peptidase_M24 PF00557.24 gi|433591395|ref|YP_007280891.1| - 1.9e-10 40.8 1.8 2.8e-10 40.3 1.8 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|433591395|ref|YP_007280891.1| - 0.0003 21.5 0.0 0.00089 19.9 0.0 1.8 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain COX15-CtaA PF02628.15 gi|433591396|ref|YP_007280892.1| - 2.5e-08 33.4 26.4 7.1e-06 25.3 12.4 3.4 1 1 2 3 3 3 2 Cytochrome oxidase assembly protein DUF5373 PF17343.2 gi|433591396|ref|YP_007280892.1| - 0.96 9.3 7.1 0.88 9.4 3.8 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5373) YdjM PF04307.14 gi|433591397|ref|YP_007280893.1| - 1.4e-16 60.2 10.8 9.1e-16 57.6 10.8 1.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Phage_holin_2_3 PF16080.5 gi|433591397|ref|YP_007280893.1| - 0.95 9.3 4.0 1.4 8.8 0.4 2.6 2 0 0 2 2 2 0 Bacteriophage holin family HP1 UDG PF03167.19 gi|433591398|ref|YP_007280894.1| - 2.5e-11 43.8 0.0 3e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF4918 PF16265.5 gi|433591398|ref|YP_007280894.1| - 0.074 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4918) Cupin_2 PF07883.11 gi|433591399|ref|YP_007280895.1| - 3.5e-09 36.2 0.1 4.3e-09 36.0 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|433591399|ref|YP_007280895.1| - 0.00016 21.6 0.0 0.00022 21.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.6 gi|433591399|ref|YP_007280895.1| - 0.0033 17.1 0.1 0.0036 17.0 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Pirin_C_2 PF17954.1 gi|433591399|ref|YP_007280895.1| - 0.0084 16.3 0.0 0.011 15.9 0.0 1.1 1 0 0 1 1 1 1 Quercetinase C-terminal cupin domain HutD PF05962.11 gi|433591399|ref|YP_007280895.1| - 0.022 14.7 0.0 0.026 14.5 0.0 1.1 1 0 0 1 1 1 0 HutD Cupin_3 PF05899.12 gi|433591399|ref|YP_007280895.1| - 0.037 13.7 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) PCO_ADO PF07847.12 gi|433591399|ref|YP_007280895.1| - 0.15 11.4 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 PCO_ADO Aldedh PF00171.22 gi|433591400|ref|YP_007280896.1| - 8.9e-135 449.8 0.0 1e-134 449.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Cu-oxidase_2 PF07731.14 gi|433591401|ref|YP_007280897.1| - 8.5e-29 100.0 15.6 6.5e-19 68.0 2.2 3.1 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|433591401|ref|YP_007280897.1| - 3.1e-22 78.8 9.5 6.4e-19 68.1 2.6 2.7 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|433591401|ref|YP_007280897.1| - 4.6e-14 52.8 0.1 2.2e-13 50.6 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|433591401|ref|YP_007280897.1| - 0.00031 20.8 0.0 0.081 13.0 0.0 2.5 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|433591401|ref|YP_007280897.1| - 0.0039 17.0 3.6 0.0059 16.4 3.6 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence TFIIB PF00382.19 gi|433591402|ref|YP_007280898.1| - 1.3e-30 105.2 0.0 1.6e-16 60.1 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433591402|ref|YP_007280898.1| - 6.1e-13 48.1 1.3 1.1e-12 47.2 1.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|433591402|ref|YP_007280898.1| - 0.00069 19.1 0.1 0.00069 19.1 0.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|433591402|ref|YP_007280898.1| - 0.0057 16.5 0.1 0.03 14.2 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|433591402|ref|YP_007280898.1| - 0.012 15.5 0.8 0.046 13.7 0.8 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Sigma70_r4_2 PF08281.12 gi|433591402|ref|YP_007280898.1| - 0.033 13.9 0.0 0.11 12.2 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|433591402|ref|YP_007280898.1| - 0.037 14.0 0.1 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_23 PF13384.6 gi|433591402|ref|YP_007280898.1| - 0.044 13.6 2.1 0.058 13.2 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain Macoilin PF09726.9 gi|433591404|ref|YP_007280900.1| - 0.049 12.2 0.1 0.059 11.9 0.1 1.1 1 0 0 1 1 1 0 Macoilin family Prefoldin_2 PF01920.20 gi|433591404|ref|YP_007280900.1| - 0.065 13.2 0.7 0.13 12.2 0.7 1.5 1 0 0 1 1 1 0 Prefoldin subunit DUF2570 PF10828.8 gi|433591404|ref|YP_007280900.1| - 0.28 11.0 1.1 0.56 10.0 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) Zn_Tnp_IS1595 PF12760.7 gi|433591405|ref|YP_007280901.1| - 0.14 12.2 5.2 1.3 9.1 5.2 2.2 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Glycos_transf_1 PF00534.20 gi|433591406|ref|YP_007280902.1| - 1.8e-23 82.9 0.0 2.9e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433591406|ref|YP_007280902.1| - 3.1e-21 76.2 0.0 8e-21 74.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|433591406|ref|YP_007280902.1| - 2.1e-16 60.4 0.0 3.8e-16 59.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433591406|ref|YP_007280902.1| - 3.5e-09 37.3 0.3 1.6e-08 35.1 0.0 2.2 3 1 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|433591406|ref|YP_007280902.1| - 1.7e-07 31.4 0.0 0.0044 17.1 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|433591406|ref|YP_007280902.1| - 0.00018 21.8 0.1 0.00041 20.7 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433591407|ref|YP_007280903.1| - 7.2e-18 65.3 0.0 1.7e-16 60.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|433591407|ref|YP_007280903.1| - 4.6e-15 55.6 0.0 1.8e-14 53.7 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|433591407|ref|YP_007280903.1| - 1.5e-12 47.8 0.0 2.3e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433591407|ref|YP_007280903.1| - 4.4e-06 27.2 0.0 8.2e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|433591407|ref|YP_007280903.1| - 0.0006 20.2 0.0 0.0012 19.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Metalloenzyme PF01676.18 gi|433591408|ref|YP_007280904.1| - 0.055 12.8 0.1 0.14 11.5 0.0 1.6 2 0 0 2 2 2 0 Metalloenzyme superfamily Sulfatase PF00884.23 gi|433591408|ref|YP_007280904.1| - 0.057 12.8 0.0 0.13 11.6 0.0 1.3 1 1 0 1 1 1 0 Sulfatase DUF2184 PF09950.9 gi|433591408|ref|YP_007280904.1| - 0.081 12.3 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) Sulfatase PF00884.23 gi|433591409|ref|YP_007280905.1| - 3.9e-47 161.2 0.1 5.2e-47 160.7 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|433591409|ref|YP_007280905.1| - 1.2e-12 48.1 1.6 5.3e-07 29.6 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.12 gi|433591409|ref|YP_007280905.1| - 0.078 12.0 0.7 1.6 7.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) LPG_synthase_TM PF03706.13 gi|433591410|ref|YP_007280906.1| - 1.2e-39 136.7 39.3 1.4e-39 136.4 39.3 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region YdjM PF04307.14 gi|433591411|ref|YP_007280907.1| - 1.3e-15 57.1 11.1 3.6e-15 55.7 11.1 1.6 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase YdjM PF04307.14 gi|433591412|ref|YP_007280908.1| - 1.8e-14 53.4 14.4 6.5e-14 51.6 14.8 1.6 1 1 1 2 2 2 1 LexA-binding, inner membrane-associated putative hydrolase SNARE_assoc PF09335.11 gi|433591413|ref|YP_007280909.1| - 4.2e-11 43.4 2.7 4.2e-11 43.4 2.7 1.5 1 1 0 1 1 1 1 SNARE associated Golgi protein Arylsulfotrans PF05935.11 gi|433591414|ref|YP_007280910.1| - 9.2e-10 38.0 1.9 1.5e-07 30.7 1.5 2.8 3 1 0 3 3 3 2 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.6 gi|433591414|ref|YP_007280910.1| - 2.1e-06 27.3 0.9 0.025 14.0 0.3 2.6 3 0 0 3 3 3 2 Arylsulfotransferase (ASST) Usp PF00582.26 gi|433591415|ref|YP_007280911.1| - 4e-66 221.9 12.9 3.3e-33 115.2 3.3 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF1697 PF08002.11 gi|433591415|ref|YP_007280911.1| - 0.049 14.1 0.5 0.26 11.7 0.1 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1697) FR47 PF08445.10 gi|433591415|ref|YP_007280911.1| - 0.081 12.9 0.3 0.71 9.9 0.0 2.5 3 0 0 3 3 3 0 FR47-like protein Acetyltransf_1 PF00583.25 gi|433591415|ref|YP_007280911.1| - 0.1 12.9 0.2 5 7.4 0.0 3.1 4 0 0 4 4 4 0 Acetyltransferase (GNAT) family PAS_4 PF08448.10 gi|433591416|ref|YP_007280912.1| - 1.4e-29 102.5 17.8 2.5e-11 43.8 0.2 4.9 5 1 1 6 6 4 3 PAS fold GAF_2 PF13185.6 gi|433591416|ref|YP_007280912.1| - 3.1e-25 89.1 10.0 5.4e-15 55.9 0.8 4.1 4 0 0 4 4 4 2 GAF domain BAT PF15915.5 gi|433591416|ref|YP_007280912.1| - 1.5e-24 86.6 6.5 1.5e-24 86.6 6.5 3.7 3 0 0 3 3 3 1 GAF and HTH_10 associated domain HalOD1 PF18545.1 gi|433591416|ref|YP_007280912.1| - 8.5e-23 80.4 2.5 1.7e-22 79.5 0.6 2.7 2 0 0 2 2 2 1 Halobacterial output domain 1 PAS PF00989.25 gi|433591416|ref|YP_007280912.1| - 1e-19 70.6 0.1 1.5e-05 25.0 0.0 3.8 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.12 gi|433591416|ref|YP_007280912.1| - 1.1e-14 54.0 0.0 3.2e-14 52.5 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.7 gi|433591416|ref|YP_007280912.1| - 6e-13 49.0 0.0 0.0004 20.6 0.0 3.7 3 0 0 3 3 3 3 PAS domain GAF_3 PF13492.6 gi|433591416|ref|YP_007280912.1| - 6.7e-12 45.9 0.8 1.6e-05 25.3 0.1 2.7 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|433591416|ref|YP_007280912.1| - 2.5e-11 44.4 0.5 0.00034 21.2 0.1 2.8 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.12 gi|433591416|ref|YP_007280912.1| - 1.6e-08 34.7 0.0 5.7e-07 29.7 0.0 3.0 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|433591416|ref|YP_007280912.1| - 4.8e-06 26.5 0.0 0.049 13.7 0.0 3.8 3 0 0 3 3 3 2 PAS domain Sigma70_r4 PF04545.16 gi|433591416|ref|YP_007280912.1| - 0.011 15.2 0.0 0.15 11.6 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 PAS_7 PF12860.7 gi|433591416|ref|YP_007280912.1| - 0.017 15.2 3.2 30 4.8 0.0 4.7 4 1 0 4 4 4 0 PAS fold MUG113 PF13455.6 gi|433591416|ref|YP_007280912.1| - 0.15 12.8 0.1 18 6.1 0.2 3.6 4 0 0 4 4 3 0 Meiotically up-regulated gene 113 N6_N4_Mtase PF01555.18 gi|433591417|ref|YP_007280913.1| - 3.1e-34 118.7 0.0 3.8e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|433591417|ref|YP_007280913.1| - 0.013 15.2 0.0 3 7.5 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|433591417|ref|YP_007280913.1| - 0.13 13.0 0.2 6.6 7.4 0.2 3.0 2 1 0 2 2 2 0 Methyltransferase domain FMN_red PF03358.15 gi|433591420|ref|YP_007280916.1| - 1.6e-31 109.2 0.0 1.9e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|433591420|ref|YP_007280916.1| - 6e-09 35.9 0.0 9.9e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold SPW PF03779.14 gi|433591422|ref|YP_007280918.1| - 3.5e-05 23.3 19.2 0.0092 15.5 3.8 2.6 2 0 0 2 2 2 2 SPW repeat 7TMR-DISM_7TM PF07695.11 gi|433591422|ref|YP_007280918.1| - 0.088 12.7 9.9 0.15 11.9 9.8 1.4 1 1 0 1 1 1 0 7TM diverse intracellular signalling Gram_pos_anchor PF00746.21 gi|433591422|ref|YP_007280918.1| - 4 7.5 0.0 4 7.5 0.0 4.0 4 0 0 4 4 4 0 LPXTG cell wall anchor motif Tetraspanin PF00335.20 gi|433591422|ref|YP_007280918.1| - 4.7 6.9 8.9 0.83 9.3 4.3 1.8 2 0 0 2 2 2 0 Tetraspanin family SPW PF03779.14 gi|433591423|ref|YP_007280919.1| - 5.8e-10 38.6 12.0 7.1e-06 25.5 0.4 2.4 2 0 0 2 2 2 2 SPW repeat FeoB_associated PF12669.7 gi|433591423|ref|YP_007280919.1| - 0.19 12.2 0.0 8.4 6.9 0.0 2.5 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DNA_methylase PF00145.17 gi|433591426|ref|YP_007280922.1| - 1.8e-55 188.7 0.0 4.1e-55 187.5 0.0 1.6 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|433591426|ref|YP_007280922.1| - 0.028 14.0 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|433591426|ref|YP_007280922.1| - 0.03 14.1 0.0 0.48 10.1 0.0 2.2 2 0 0 2 2 2 0 Met-10+ like-protein DNA_methylase PF00145.17 gi|433591427|ref|YP_007280923.1| - 7.3e-67 226.1 0.0 9e-67 225.8 0.0 1.1 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase MTS PF05175.14 gi|433591427|ref|YP_007280923.1| - 9.7e-05 22.0 0.0 0.00019 21.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|433591427|ref|YP_007280923.1| - 0.00077 19.1 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|433591427|ref|YP_007280923.1| - 0.015 16.0 0.3 0.055 14.2 0.0 2.1 3 0 0 3 3 3 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433591427|ref|YP_007280923.1| - 0.07 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HATPase_c PF02518.26 gi|433591428|ref|YP_007280924.1| - 0.0042 17.6 0.0 0.012 16.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IMPDH PF00478.25 gi|433591433|ref|YP_007280929.1| - 1.1e-138 462.0 5.3 1.3e-138 461.8 5.3 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|433591433|ref|YP_007280929.1| - 1.2e-24 86.5 3.8 1.9e-11 44.2 0.3 2.8 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|433591433|ref|YP_007280929.1| - 1.9e-13 50.5 1.0 2.9e-07 30.2 0.3 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|433591433|ref|YP_007280929.1| - 1.2e-08 34.4 3.1 2.1e-08 33.6 3.1 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.14 gi|433591433|ref|YP_007280929.1| - 3.8e-05 23.1 6.3 7.2e-05 22.2 2.0 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|433591433|ref|YP_007280929.1| - 5.3e-05 22.8 2.6 9.9e-05 21.9 2.6 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|433591433|ref|YP_007280929.1| - 8.8e-05 21.8 4.1 0.00012 21.4 3.3 1.6 2 0 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|433591433|ref|YP_007280929.1| - 0.00026 20.3 1.0 0.00049 19.4 1.0 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|433591433|ref|YP_007280929.1| - 0.0025 16.9 0.1 0.0044 16.2 0.1 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|433591433|ref|YP_007280929.1| - 0.09 12.2 0.3 0.2 11.1 0.1 1.6 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator AAA_18 PF13238.6 gi|433591434|ref|YP_007280930.1| - 7.9e-19 68.5 0.0 1.1e-18 68.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|433591434|ref|YP_007280930.1| - 9.5e-18 64.9 0.1 8.3e-17 61.9 0.1 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|433591434|ref|YP_007280930.1| - 2.8e-11 44.0 0.0 4.3e-11 43.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|433591434|ref|YP_007280930.1| - 5.2e-08 33.3 0.0 1e-07 32.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|433591434|ref|YP_007280930.1| - 1.1e-06 28.5 0.0 0.00019 21.3 0.0 2.2 1 1 1 2 2 2 1 Cytidylate kinase AAA PF00004.29 gi|433591434|ref|YP_007280930.1| - 1e-05 26.0 0.0 2.4e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.22 gi|433591434|ref|YP_007280930.1| - 0.00019 21.5 0.0 0.00052 20.1 0.0 1.8 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|433591434|ref|YP_007280930.1| - 0.00023 21.3 0.0 0.00073 19.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433591434|ref|YP_007280930.1| - 0.002 18.5 0.2 0.011 16.1 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain CoaE PF01121.20 gi|433591434|ref|YP_007280930.1| - 0.0037 17.0 0.0 0.38 10.4 0.0 2.1 1 1 1 2 2 2 1 Dephospho-CoA kinase RHH_4 PF13467.6 gi|433591434|ref|YP_007280930.1| - 0.014 15.3 0.2 0.11 12.4 0.2 2.2 1 1 1 2 2 2 0 Ribbon-helix-helix domain AAA_5 PF07728.14 gi|433591434|ref|YP_007280930.1| - 0.039 14.0 0.0 0.085 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) SKI PF01202.22 gi|433591434|ref|YP_007280930.1| - 0.063 13.4 0.2 0.53 10.4 0.2 2.1 1 1 0 1 1 1 0 Shikimate kinase AAA_22 PF13401.6 gi|433591434|ref|YP_007280930.1| - 0.064 13.5 0.1 0.12 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|433591434|ref|YP_007280930.1| - 0.071 13.0 0.0 0.2 11.5 0.0 1.7 1 1 1 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|433591434|ref|YP_007280930.1| - 0.09 13.2 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|433591434|ref|YP_007280930.1| - 0.17 11.8 0.1 0.37 10.7 0.1 1.5 1 1 0 1 1 1 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|433591434|ref|YP_007280930.1| - 0.17 11.1 0.0 0.26 10.5 0.0 1.3 1 1 0 1 1 1 0 NB-ARC domain RHH_1 PF01402.21 gi|433591434|ref|YP_007280930.1| - 1.6 8.7 5.7 6.8 6.8 0.1 3.5 4 0 0 4 4 4 0 Ribbon-helix-helix protein, copG family Cupin_2 PF07883.11 gi|433591435|ref|YP_007280931.1| - 7.9e-13 47.9 2.1 1.9e-12 46.7 2.1 1.7 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|433591435|ref|YP_007280931.1| - 6e-05 23.0 0.4 0.00012 22.0 0.3 1.6 1 1 1 2 2 2 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|433591435|ref|YP_007280931.1| - 0.0048 16.6 1.8 0.011 15.4 1.8 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|433591435|ref|YP_007280931.1| - 0.0092 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Cupin Nudix_N_2 PF14803.6 gi|433591435|ref|YP_007280931.1| - 0.012 15.5 1.2 0.024 14.5 1.2 1.4 1 0 0 1 1 1 0 Nudix N-terminal MannoseP_isomer PF01050.18 gi|433591435|ref|YP_007280931.1| - 0.042 13.7 0.0 0.056 13.3 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase TAT_signal PF10518.9 gi|433591436|ref|YP_007280932.1| - 0.0024 17.6 1.3 0.0035 17.1 1.3 1.2 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence YcaO PF02624.16 gi|433591437|ref|YP_007280933.1| - 2.8e-53 181.3 6.7 4.5e-53 180.6 6.7 1.3 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding Na_H_Exchanger PF00999.21 gi|433591438|ref|YP_007280934.1| - 1.2e-61 208.7 48.4 1.4e-61 208.4 48.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MatE PF01554.18 gi|433591439|ref|YP_007280935.1| - 3.1e-65 218.7 37.1 1.5e-39 135.2 15.0 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|433591439|ref|YP_007280935.1| - 2e-09 37.7 40.4 5.1e-07 29.9 14.0 4.0 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain YniB PF14002.6 gi|433591439|ref|YP_007280935.1| - 0.049 13.4 1.4 0.12 12.1 0.0 2.1 2 0 0 2 2 2 0 YniB-like protein Pmp3 PF01679.17 gi|433591439|ref|YP_007280935.1| - 0.22 11.7 4.4 0.3 11.3 0.1 3.1 3 0 0 3 3 3 0 Proteolipid membrane potential modulator Iron_permease PF04120.12 gi|433591439|ref|YP_007280935.1| - 0.5 10.1 1.7 1 9.2 0.1 2.3 2 0 0 2 2 2 0 Low affinity iron permease TetR_C_6 PF13977.6 gi|433591440|ref|YP_007280936.1| - 1.1e-18 67.5 0.9 1.1e-18 67.5 0.9 1.7 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|433591440|ref|YP_007280936.1| - 2.7e-13 49.5 0.1 1.7e-12 46.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|433591440|ref|YP_007280936.1| - 1.1e-05 25.6 0.1 2.3e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|433591440|ref|YP_007280936.1| - 2.1e-05 24.8 1.0 4.5e-05 23.7 1.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|433591440|ref|YP_007280936.1| - 0.001 19.1 0.1 0.0027 17.8 0.1 1.8 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_13 PF16925.5 gi|433591440|ref|YP_007280936.1| - 0.003 17.5 0.0 0.0077 16.2 0.0 1.8 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|433591440|ref|YP_007280936.1| - 0.0066 16.5 0.0 0.014 15.5 0.0 1.6 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain zf-HC2 PF13490.6 gi|433591440|ref|YP_007280936.1| - 0.013 15.7 1.6 0.85 9.9 0.1 2.7 2 0 0 2 2 2 0 Putative zinc-finger TetR_C_29 PF17938.1 gi|433591440|ref|YP_007280936.1| - 0.072 13.2 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_24 PF13412.6 gi|433591440|ref|YP_007280936.1| - 0.082 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433591440|ref|YP_007280936.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family RNA_binding PF01877.17 gi|433591441|ref|YP_007280937.1| - 2.2e-34 118.3 0.0 3.5e-34 117.6 0.0 1.3 1 0 0 1 1 1 1 RNA binding DJ-1_PfpI PF01965.24 gi|433591444|ref|YP_007280940.1| - 6.4e-17 61.8 0.2 1.6e-15 57.3 0.2 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|433591444|ref|YP_007280940.1| - 2.1e-09 37.3 0.0 4.5e-09 36.3 0.0 1.6 1 1 0 1 1 1 1 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|433591444|ref|YP_007280940.1| - 0.02 14.5 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain ThuA PF06283.11 gi|433591444|ref|YP_007280940.1| - 0.081 13.1 0.0 0.081 13.1 0.0 1.3 1 0 0 1 1 1 0 Trehalose utilisation HSP20 PF00011.21 gi|433591445|ref|YP_007280941.1| - 6e-22 77.7 0.1 8.4e-22 77.3 0.1 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|433591445|ref|YP_007280941.1| - 7.7e-10 38.2 0.0 1.6e-09 37.2 0.0 1.6 1 0 0 1 1 1 1 HSP20-like domain found in ArsA DHHA1 PF02272.19 gi|433591447|ref|YP_007280943.1| - 6.3e-13 49.3 0.2 1.4e-12 48.2 0.2 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|433591447|ref|YP_007280943.1| - 3e-12 46.7 0.1 5.1e-12 45.9 0.1 1.4 1 0 0 1 1 1 1 DHH family HTH_10 PF04967.12 gi|433591448|ref|YP_007280944.1| - 4.8e-19 67.9 0.0 6.7e-19 67.4 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|433591448|ref|YP_007280944.1| - 0.00019 20.9 0.0 0.00049 19.6 0.0 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|433591448|ref|YP_007280944.1| - 0.0014 18.5 0.2 0.0032 17.3 0.2 1.6 1 1 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|433591448|ref|YP_007280944.1| - 0.0037 17.2 0.1 0.0074 16.2 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_1 PF00126.27 gi|433591448|ref|YP_007280944.1| - 0.012 15.6 0.2 0.027 14.4 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 gi|433591448|ref|YP_007280944.1| - 0.043 13.4 0.1 0.075 12.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ACT_5 PF13710.6 gi|433591448|ref|YP_007280944.1| - 0.061 13.2 0.6 0.13 12.2 0.4 1.7 2 0 0 2 2 2 0 ACT domain Thiolase_N PF00108.23 gi|433591449|ref|YP_007280945.1| - 5.4e-22 78.4 0.3 1.9e-21 76.6 0.3 1.9 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|433591449|ref|YP_007280945.1| - 4.3e-10 39.3 0.1 1.3e-09 37.8 0.1 1.8 1 1 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|433591449|ref|YP_007280945.1| - 9.7e-07 28.6 1.8 1.4e-06 28.1 0.8 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|433591449|ref|YP_007280945.1| - 0.0023 17.7 1.9 0.067 13.1 0.2 2.9 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35_N PF12172.8 gi|433591450|ref|YP_007280946.1| - 4.9e-08 32.7 2.8 1e-07 31.7 2.8 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) ACP_syn_III_C PF08541.10 gi|433591450|ref|YP_007280946.1| - 0.00044 20.4 1.5 0.0084 16.3 1.4 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal OB_aCoA_assoc PF01796.17 gi|433591450|ref|YP_007280946.1| - 0.0058 16.6 0.4 0.075 13.0 0.0 2.7 2 0 0 2 2 2 1 DUF35 OB-fold domain, acyl-CoA-associated OCD_Mu_crystall PF02423.15 gi|433591451|ref|YP_007280947.1| - 1.3e-66 224.7 1.1 1.5e-66 224.5 1.1 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|433591451|ref|YP_007280947.1| - 7e-06 26.2 0.0 1.1e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|433591451|ref|YP_007280947.1| - 8.7e-05 23.0 0.4 0.0002 21.9 0.1 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|433591451|ref|YP_007280947.1| - 0.029 15.2 0.2 0.053 14.3 0.2 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|433591451|ref|YP_007280947.1| - 0.069 13.3 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase PetG PF02529.15 gi|433591452|ref|YP_007280948.1| - 0.024 14.5 2.7 0.047 13.5 2.5 1.6 1 1 0 1 1 1 0 Cytochrome B6-F complex subunit 5 DUF3054 PF11255.8 gi|433591453|ref|YP_007280949.1| - 3.2e-25 88.8 6.0 3.8e-25 88.5 6.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) UCR_6-4kD PF08997.10 gi|433591453|ref|YP_007280949.1| - 1.7 8.7 4.6 0.97 9.4 0.3 2.4 3 0 0 3 3 3 0 Ubiquinol-cytochrome C reductase complex, 6.4kD protein DnaJ PF00226.31 gi|433591454|ref|YP_007280950.1| - 9.3e-09 35.3 0.0 1.6e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain ATPase-cat_bd PF12156.8 gi|433591454|ref|YP_007280950.1| - 0.6 10.9 17.2 0.34 11.7 0.9 3.6 2 1 2 4 4 4 0 Putative metal-binding domain of cation transport ATPase Stc1 PF12898.7 gi|433591454|ref|YP_007280950.1| - 1.4 9.5 15.8 1.5e+02 3.0 14.5 3.2 1 1 1 2 2 2 0 Stc1 domain Headcase PF16002.5 gi|433591454|ref|YP_007280950.1| - 2.8 7.3 5.3 13 5.2 0.1 2.9 3 0 0 3 3 3 0 Headcase protein TIR_2 PF13676.6 gi|433591455|ref|YP_007280951.1| - 1.7e-08 35.1 0.0 2.2e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 TIR domain Nuc_deoxyrib_tr PF05014.15 gi|433591455|ref|YP_007280951.1| - 0.00014 21.8 0.0 0.00037 20.5 0.0 1.7 2 0 0 2 2 2 1 Nucleoside 2-deoxyribosyltransferase DUF1863 PF08937.11 gi|433591455|ref|YP_007280951.1| - 0.0026 18.1 0.0 0.0037 17.6 0.0 1.3 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) TIM PF00121.18 gi|433591457|ref|YP_007280953.1| - 5.2e-09 35.8 0.0 1.4e-08 34.4 0.0 1.6 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|433591457|ref|YP_007280953.1| - 0.0003 20.2 3.6 0.00052 19.4 2.8 1.8 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|433591457|ref|YP_007280953.1| - 0.022 13.9 0.0 0.064 12.4 0.0 1.7 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|433591457|ref|YP_007280953.1| - 0.52 9.3 10.1 0.069 12.2 5.2 1.9 2 1 0 3 3 3 0 FMN-dependent dehydrogenase HTH_3 PF01381.22 gi|433591458|ref|YP_007280954.1| - 1.2e-08 34.8 0.3 1.8e-08 34.3 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|433591458|ref|YP_007280954.1| - 4.1e-07 29.9 0.4 6.4e-07 29.3 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|433591458|ref|YP_007280954.1| - 1.2e-06 28.8 0.1 1.8e-06 28.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|433591458|ref|YP_007280954.1| - 2.3e-05 24.2 0.4 3.4e-05 23.6 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|433591458|ref|YP_007280954.1| - 0.061 13.3 0.0 0.095 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PI3K_1B_p101 PF10486.9 gi|433591458|ref|YP_007280954.1| - 0.49 8.1 11.4 13 3.4 11.6 1.9 1 1 1 2 2 2 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit Macoilin PF09726.9 gi|433591458|ref|YP_007280954.1| - 1.6 7.2 7.1 1.7 7.1 7.1 1.1 1 0 0 1 1 1 0 Macoilin family CDP-OH_P_transf PF01066.21 gi|433591459|ref|YP_007280955.1| - 2.1e-08 34.8 0.6 2.1e-08 34.8 0.6 2.8 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF4051 PF13260.6 gi|433591459|ref|YP_007280955.1| - 0.057 13.2 0.3 0.13 12.0 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) PRTase_1 PF11202.8 gi|433591459|ref|YP_007280955.1| - 0.095 11.9 0.2 0.13 11.5 0.2 1.1 1 0 0 1 1 1 0 Phosphoribosyl transferase (PRTase) AAA_18 PF13238.6 gi|433591460|ref|YP_007280956.1| - 5.2e-24 85.2 0.1 7.2e-24 84.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|433591460|ref|YP_007280956.1| - 1.1e-05 25.7 5.2 2.9e-05 24.4 5.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|433591460|ref|YP_007280956.1| - 0.00016 21.8 2.6 0.0072 16.5 2.6 2.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|433591460|ref|YP_007280956.1| - 0.00019 21.9 0.8 0.18 12.3 0.1 2.7 2 1 1 3 3 3 2 AAA domain dNK PF01712.19 gi|433591460|ref|YP_007280956.1| - 0.0008 19.3 0.0 0.28 11.0 0.0 2.1 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_22 PF13401.6 gi|433591460|ref|YP_007280956.1| - 0.0017 18.6 0.0 0.0026 18.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433591460|ref|YP_007280956.1| - 0.0019 18.6 2.7 0.0065 16.9 2.7 1.8 1 1 0 1 1 1 1 AAA ATPase domain PRK PF00485.18 gi|433591460|ref|YP_007280956.1| - 0.013 15.2 0.4 0.7 9.6 0.0 2.4 2 1 1 3 3 3 0 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.14 gi|433591460|ref|YP_007280956.1| - 0.023 14.7 0.1 0.72 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MeaB PF03308.16 gi|433591460|ref|YP_007280956.1| - 0.024 13.6 0.0 0.046 12.7 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Thymidylate_kin PF02223.17 gi|433591460|ref|YP_007280956.1| - 0.026 14.2 0.2 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase NTPase_1 PF03266.15 gi|433591460|ref|YP_007280956.1| - 0.026 14.4 0.0 0.062 13.2 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.6 gi|433591460|ref|YP_007280956.1| - 0.041 13.6 0.0 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain CoaE PF01121.20 gi|433591460|ref|YP_007280956.1| - 0.043 13.5 0.1 3.6 7.2 0.0 2.2 2 0 0 2 2 2 0 Dephospho-CoA kinase DUF87 PF01935.17 gi|433591460|ref|YP_007280956.1| - 0.057 13.5 0.0 0.077 13.1 0.0 1.6 1 1 0 1 1 1 0 Helicase HerA, central domain AAA_19 PF13245.6 gi|433591460|ref|YP_007280956.1| - 0.074 13.4 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain CPT PF07931.12 gi|433591460|ref|YP_007280956.1| - 0.076 12.9 0.8 0.22 11.3 0.8 2.0 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein KTI12 PF08433.10 gi|433591460|ref|YP_007280956.1| - 0.081 12.4 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA PF00004.29 gi|433591460|ref|YP_007280956.1| - 0.11 12.9 0.0 0.35 11.3 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|433591460|ref|YP_007280956.1| - 0.15 11.8 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Aminotran_1_2 PF00155.21 gi|433591461|ref|YP_007280957.1| - 6.5e-66 222.9 0.0 7.4e-66 222.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|433591461|ref|YP_007280957.1| - 0.0063 15.4 0.0 0.039 12.8 0.0 2.0 1 1 0 1 1 1 1 Allinase FTR PF01913.18 gi|433591461|ref|YP_007280957.1| - 0.045 13.7 0.1 0.1 12.6 0.1 1.5 1 0 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase DUF2437 PF10370.9 gi|433591461|ref|YP_007280957.1| - 0.12 13.3 0.1 0.45 11.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2437) Cys_Met_Meta_PP PF01053.20 gi|433591461|ref|YP_007280957.1| - 0.13 10.7 0.0 0.37 9.3 0.0 1.6 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme TAT_signal PF10518.9 gi|433591462|ref|YP_007280958.1| - 0.0023 17.7 1.6 0.0041 16.9 1.6 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DNA_ligase_A_M PF01068.21 gi|433591463|ref|YP_007280959.1| - 2.4e-42 144.9 0.0 3.7e-42 144.3 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|433591463|ref|YP_007280959.1| - 1.6e-36 126.2 0.0 3.6e-36 125.1 0.0 1.6 1 1 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|433591463|ref|YP_007280959.1| - 6.7e-18 65.1 0.0 1.6e-17 63.9 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region GCS PF03074.16 gi|433591464|ref|YP_007280960.1| - 0.2 11.0 0.0 0.94 8.8 0.0 1.8 1 1 0 2 2 2 0 Glutamate-cysteine ligase FAD_binding_4 PF01565.23 gi|433591465|ref|YP_007280961.1| - 3.7e-32 111.0 1.2 6.8e-32 110.1 1.2 1.5 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|433591465|ref|YP_007280961.1| - 6.1e-11 42.2 0.1 4.9e-10 39.3 0.1 2.4 2 0 0 2 2 2 1 Berberine and berberine like DUF5059 PF16502.5 gi|433591466|ref|YP_007280962.1| - 3.4e-295 980.7 118.7 3e-294 977.6 114.1 2.0 2 0 0 2 2 2 2 Domain of unknown function (DUF5059) Copper-bind PF00127.20 gi|433591466|ref|YP_007280962.1| - 2e-15 57.1 0.1 5.7e-15 55.6 0.1 1.8 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|433591466|ref|YP_007280962.1| - 0.0038 17.0 0.6 0.0038 17.0 0.6 4.2 4 0 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence PRTP PF01366.18 gi|433591466|ref|YP_007280962.1| - 0.31 9.1 0.5 5.7 4.9 0.1 2.2 2 0 0 2 2 2 0 Herpesvirus processing and transport protein T2SSF PF00482.23 gi|433591466|ref|YP_007280962.1| - 8.6 6.3 6.5 2.8 7.9 0.6 3.2 2 2 1 3 3 3 0 Type II secretion system (T2SS), protein F UPF0052 PF01933.18 gi|433591467|ref|YP_007280963.1| - 8.4e-45 153.2 0.0 1e-44 152.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.17 gi|433591468|ref|YP_007280964.1| - 7.5e-05 22.0 0.4 0.00041 19.5 0.4 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) Radical_SAM PF04055.21 gi|433591468|ref|YP_007280964.1| - 0.0044 17.4 0.1 0.47 10.8 0.2 2.8 1 1 1 2 2 2 1 Radical SAM superfamily His_biosynth PF00977.21 gi|433591468|ref|YP_007280964.1| - 0.005 16.3 0.0 0.0082 15.6 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Cupin_2 PF07883.11 gi|433591469|ref|YP_007280965.1| - 6.4e-10 38.6 0.1 7.9e-10 38.3 0.1 1.1 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|433591469|ref|YP_007280965.1| - 0.0041 16.8 0.5 0.0061 16.2 0.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Pirin_C PF05726.13 gi|433591469|ref|YP_007280965.1| - 0.026 14.9 0.0 0.032 14.6 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain HutD PF05962.11 gi|433591469|ref|YP_007280965.1| - 0.066 13.2 0.0 0.076 13.0 0.0 1.1 1 0 0 1 1 1 0 HutD CENP-C_C PF11699.8 gi|433591469|ref|YP_007280965.1| - 0.099 12.9 0.0 0.14 12.3 0.0 1.4 1 1 0 1 1 1 0 Mif2/CENP-C like CitG PF01874.16 gi|433591470|ref|YP_007280966.1| - 2.8e-69 233.9 9.4 3.1e-69 233.7 9.4 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|433591471|ref|YP_007280967.1| - 2.5e-42 144.6 0.0 2.9e-42 144.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Ribosomal_S17e PF00833.18 gi|433591472|ref|YP_007280968.1| - 9.3e-13 48.2 0.1 1.1e-12 47.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4019 PF13211.6 gi|433591472|ref|YP_007280968.1| - 0.067 13.6 0.0 0.084 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) TPPK_C PF12555.8 gi|433591473|ref|YP_007280969.1| - 0.39 10.8 7.4 2.9 8.0 1.4 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal DUF4307 PF14155.6 gi|433591473|ref|YP_007280969.1| - 5.8 6.8 6.6 1.2 9.0 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) Semialdhyde_dh PF01118.24 gi|433591474|ref|YP_007280970.1| - 4.8e-34 117.4 0.0 7.9e-34 116.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|433591474|ref|YP_007280970.1| - 3e-30 105.7 0.0 4.2e-30 105.2 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DXP_reductoisom PF02670.16 gi|433591474|ref|YP_007280970.1| - 0.00024 21.8 0.0 0.00044 21.0 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DapB_N PF01113.20 gi|433591474|ref|YP_007280970.1| - 0.00038 20.6 0.0 0.00073 19.7 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|433591474|ref|YP_007280970.1| - 0.023 15.5 0.0 0.046 14.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.20 gi|433591474|ref|YP_007280970.1| - 0.1 12.2 0.0 0.27 10.8 0.0 1.7 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HTH_10 PF04967.12 gi|433591475|ref|YP_007280971.1| - 5.5e-17 61.3 0.2 9.3e-17 60.6 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|433591475|ref|YP_007280971.1| - 1.3e-06 28.4 2.7 2.3e-06 27.6 2.7 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_20 PF12840.7 gi|433591475|ref|YP_007280971.1| - 0.075 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|433591475|ref|YP_007280971.1| - 0.12 12.4 0.3 0.77 9.8 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HalOD1 PF18545.1 gi|433591476|ref|YP_007280972.1| - 2.2e-21 75.9 0.2 3e-21 75.4 0.2 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 Usp PF00582.26 gi|433591477|ref|YP_007280973.1| - 6.6e-11 42.9 0.7 7.8e-11 42.7 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family HGD-D PF06050.13 gi|433591477|ref|YP_007280973.1| - 0.0075 16.1 0.0 0.01 15.6 0.0 1.2 1 1 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component 2-Hacid_dh_C PF02826.19 gi|433591478|ref|YP_007280974.1| - 1e-54 184.6 0.0 1.5e-54 184.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|433591478|ref|YP_007280974.1| - 1.4e-11 44.2 0.0 1.8e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.12 gi|433591478|ref|YP_007280974.1| - 0.00047 19.8 0.0 0.014 15.0 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ThiF PF00899.21 gi|433591478|ref|YP_007280974.1| - 0.003 16.9 0.0 0.0055 16.1 0.0 1.4 1 0 0 1 1 1 1 ThiF family F420_oxidored PF03807.17 gi|433591478|ref|YP_007280974.1| - 0.0049 17.4 0.0 0.0098 16.5 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|433591478|ref|YP_007280974.1| - 0.0058 17.1 0.0 0.012 16.0 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding DUF4440 PF14534.6 gi|433591478|ref|YP_007280974.1| - 0.093 13.1 0.0 0.48 10.9 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4440) MtrF PF09472.10 gi|433591479|ref|YP_007280975.1| - 0.17 11.3 2.4 0.19 11.1 2.4 1.1 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Pyr_redox_2 PF07992.14 gi|433591480|ref|YP_007280976.1| - 6.3e-10 38.8 0.1 2.6e-05 23.6 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|433591480|ref|YP_007280976.1| - 8.7e-09 35.4 3.8 0.00051 19.7 0.1 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|433591480|ref|YP_007280976.1| - 5.3e-06 25.9 0.5 8.5e-05 21.9 0.5 2.0 1 1 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.6 gi|433591480|ref|YP_007280976.1| - 1.3e-05 25.2 0.1 0.027 14.5 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|433591480|ref|YP_007280976.1| - 2.1e-05 24.1 0.1 3.4e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|433591480|ref|YP_007280976.1| - 0.00016 20.5 0.5 0.00092 18.0 0.7 1.9 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|433591480|ref|YP_007280976.1| - 0.00037 19.7 4.8 0.00042 19.5 0.4 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|433591480|ref|YP_007280976.1| - 0.00043 19.5 0.2 0.00085 18.5 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|433591480|ref|YP_007280976.1| - 0.00066 18.6 0.1 0.078 11.8 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|433591480|ref|YP_007280976.1| - 0.00075 19.7 0.4 0.0021 18.2 0.4 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|433591480|ref|YP_007280976.1| - 0.0085 15.2 0.1 0.062 12.3 0.1 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.17 gi|433591480|ref|YP_007280976.1| - 0.052 12.8 0.1 0.087 12.0 0.1 1.3 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|433591480|ref|YP_007280976.1| - 0.17 11.2 0.2 0.26 10.6 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain COX3 PF00510.18 gi|433591481|ref|YP_007280977.1| - 4.1e-30 105.5 5.5 4.8e-30 105.2 5.5 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III Mn_catalase PF05067.12 gi|433591483|ref|YP_007280979.1| - 4.5e-80 268.7 0.3 5.3e-80 268.4 0.3 1.0 1 0 0 1 1 1 1 Manganese containing catalase Foie-gras_1 PF11817.8 gi|433591483|ref|YP_007280979.1| - 0.0029 17.3 0.1 0.19 11.3 0.0 2.1 1 1 1 2 2 2 2 Foie gras liver health family 1 Rubrerythrin PF02915.17 gi|433591483|ref|YP_007280979.1| - 0.019 15.4 0.2 0.038 14.4 0.2 1.5 1 0 0 1 1 1 0 Rubrerythrin Ferritin PF00210.24 gi|433591483|ref|YP_007280979.1| - 0.31 11.0 6.1 0.23 11.4 2.2 2.5 2 1 1 3 3 3 0 Ferritin-like domain DUF3185 PF11381.8 gi|433591484|ref|YP_007280980.1| - 8.5 6.5 9.1 24 5.1 3.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF3040 PF11239.8 gi|433591484|ref|YP_007280980.1| - 9.7 6.5 8.3 7.6 6.9 0.2 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) COX1 PF00115.20 gi|433591485|ref|YP_007280981.1| - 2.2e-136 455.2 57.6 2.2e-136 455.2 57.6 2.7 2 1 1 3 3 3 2 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.20 gi|433591486|ref|YP_007280982.1| - 4.7e-18 65.2 1.0 5.2e-17 61.8 0.0 2.2 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|433591486|ref|YP_007280982.1| - 1.1e-09 38.3 0.2 1.7e-09 37.7 0.2 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.6 gi|433591486|ref|YP_007280982.1| - 0.0013 18.9 0.0 0.0024 17.9 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain TctB PF07331.11 gi|433591486|ref|YP_007280982.1| - 0.031 14.6 1.0 0.047 13.9 1.0 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF4131 PF13567.6 gi|433591486|ref|YP_007280982.1| - 0.1 12.2 0.5 0.47 10.1 0.2 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Sulf_transp PF04143.14 gi|433591486|ref|YP_007280982.1| - 0.18 11.4 0.1 0.25 10.9 0.1 1.1 1 0 0 1 1 1 0 Sulphur transport YdjM PF04307.14 gi|433591487|ref|YP_007280983.1| - 8.4e-10 38.2 4.6 1e-09 37.9 4.6 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase SKG6 PF08693.10 gi|433591488|ref|YP_007280984.1| - 0.33 10.4 12.7 1.9 8.0 1.5 2.2 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Histidinol_dh PF00815.20 gi|433591489|ref|YP_007280985.1| - 8.4e-155 515.8 3.1 1e-154 515.5 3.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DnaG_DnaB_bind PF08278.11 gi|433591490|ref|YP_007280986.1| - 0.06 13.9 0.0 0.06 13.9 0.0 1.0 1 0 0 1 1 1 0 DNA primase DnaG DnaB-binding Fe-S_biosyn PF01521.20 gi|433591491|ref|YP_007280987.1| - 1e-19 70.7 0.0 1.2e-19 70.6 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis DUF2007 PF09413.10 gi|433591491|ref|YP_007280987.1| - 0.12 12.6 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 Putative prokaryotic signal transducing protein Dodecin PF07311.12 gi|433591492|ref|YP_007280988.1| - 1e-21 76.9 0.2 1.1e-21 76.8 0.2 1.0 1 0 0 1 1 1 1 Dodecin DUF2238 PF09997.9 gi|433591493|ref|YP_007280989.1| - 0.00029 20.6 2.3 0.00056 19.7 2.3 1.7 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF4079 PF13301.6 gi|433591493|ref|YP_007280989.1| - 0.041 14.0 2.2 0.067 13.3 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) YdjM PF04307.14 gi|433591495|ref|YP_007280991.1| - 4.5e-16 58.7 24.1 1.1e-15 57.4 18.4 3.1 1 1 1 2 2 2 2 LexA-binding, inner membrane-associated putative hydrolase Aminotran_5 PF00266.19 gi|433591496|ref|YP_007280992.1| - 8.4e-36 123.7 0.0 1e-35 123.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|433591496|ref|YP_007280992.1| - 6.4e-05 21.7 0.0 9.1e-05 21.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|433591496|ref|YP_007280992.1| - 0.01 15.2 0.2 0.017 14.5 0.2 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Terminase_GpA PF05876.12 gi|433591498|ref|YP_007280994.1| - 0.077 11.5 0.7 0.1 11.2 0.7 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) Zn-ribbon_8 PF09723.10 gi|433591498|ref|YP_007280994.1| - 0.11 12.7 0.9 0.19 11.9 0.9 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Usp PF00582.26 gi|433591499|ref|YP_007280995.1| - 5.8e-11 43.1 0.8 8.4e-10 39.3 0.8 2.0 1 1 0 1 1 1 1 Universal stress protein family TrkA_N PF02254.18 gi|433591499|ref|YP_007280995.1| - 0.028 14.7 0.1 0.041 14.1 0.1 1.4 1 1 0 1 1 1 0 TrkA-N domain HisKA_2 PF07568.12 gi|433591499|ref|YP_007280995.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase Usp PF00582.26 gi|433591500|ref|YP_007280996.1| - 2.7e-34 118.7 1.2 3e-34 118.5 1.2 1.0 1 0 0 1 1 1 1 Universal stress protein family MS_channel PF00924.18 gi|433591501|ref|YP_007280997.1| - 3.3e-33 115.0 0.1 4.4e-33 114.6 0.1 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|433591501|ref|YP_007280997.1| - 0.02 14.9 2.5 0.02 14.9 2.5 2.1 2 0 0 2 2 2 0 Conserved TM helix DUF3611 PF12263.8 gi|433591501|ref|YP_007280997.1| - 0.052 13.5 2.6 0.08 12.8 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3611) DUF3523 PF12037.8 gi|433591501|ref|YP_007280997.1| - 0.26 10.6 0.8 0.42 9.9 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3523) Regulator_TrmB PF11495.8 gi|433591502|ref|YP_007280998.1| - 1.1e-67 227.6 0.6 1.5e-67 227.2 0.4 1.3 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|433591502|ref|YP_007280998.1| - 4.7e-21 74.4 0.0 4.4e-20 71.3 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|433591502|ref|YP_007280998.1| - 1.4e-06 28.1 0.1 5.7e-06 26.1 0.1 2.0 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|433591502|ref|YP_007280998.1| - 9.8e-06 25.5 1.1 4e-05 23.6 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433591502|ref|YP_007280998.1| - 5.2e-05 22.9 0.2 0.00019 21.2 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433591502|ref|YP_007280998.1| - 0.00018 21.0 0.1 0.0055 16.2 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433591502|ref|YP_007280998.1| - 0.00052 19.8 0.0 0.0037 17.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_CodY PF08222.11 gi|433591502|ref|YP_007280998.1| - 0.0024 17.4 0.0 0.008 15.7 0.0 1.9 1 0 0 1 1 1 1 CodY helix-turn-helix domain Rrf2 PF02082.20 gi|433591502|ref|YP_007280998.1| - 0.0059 16.9 0.0 0.013 15.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|433591502|ref|YP_007280998.1| - 0.042 13.8 0.1 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 MarR family DUF2250 PF10007.9 gi|433591502|ref|YP_007280998.1| - 0.064 13.4 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_47 PF16221.5 gi|433591502|ref|YP_007280998.1| - 0.088 12.4 0.0 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 winged helix-turn-helix HTH_29 PF13551.6 gi|433591502|ref|YP_007280998.1| - 0.089 12.8 0.2 13 5.9 0.0 3.6 3 1 1 4 4 4 0 Winged helix-turn helix HTH_9 PF08221.11 gi|433591502|ref|YP_007280998.1| - 0.09 12.9 0.0 0.26 11.4 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433591502|ref|YP_007280998.1| - 0.093 12.7 0.0 0.23 11.5 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_37 PF13744.6 gi|433591502|ref|YP_007280998.1| - 0.12 12.3 0.0 0.4 10.7 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain BPD_transp_1 PF00528.22 gi|433591503|ref|YP_007280999.1| - 3.9e-16 59.3 21.4 3.9e-16 59.3 21.4 2.6 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component TraP PF07296.11 gi|433591503|ref|YP_007280999.1| - 0.044 13.0 3.0 1.4 8.1 0.5 2.3 2 0 0 2 2 2 0 TraP protein ThiW PF09512.10 gi|433591503|ref|YP_007280999.1| - 0.32 11.1 11.9 0.21 11.7 5.3 2.6 2 0 0 2 2 2 0 Thiamine-precursor transporter protein (ThiW) BPD_transp_1 PF00528.22 gi|433591504|ref|YP_007281000.1| - 2.1e-10 40.6 19.1 2.1e-10 40.6 19.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|433591505|ref|YP_007281001.1| - 7.3e-33 114.0 0.0 1.2e-32 113.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|433591505|ref|YP_007281001.1| - 8.2e-13 49.0 0.1 2.6e-12 47.4 0.1 1.9 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|433591505|ref|YP_007281001.1| - 1.7e-06 28.1 0.0 0.011 15.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|433591505|ref|YP_007281001.1| - 1.3e-05 25.6 2.0 4.6e-05 23.9 0.8 2.6 2 0 0 2 2 2 1 CysA C-terminal regulatory domain TOBE_2 PF08402.10 gi|433591505|ref|YP_007281001.1| - 0.00012 22.2 0.2 0.0039 17.3 0.1 2.7 1 1 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|433591505|ref|YP_007281001.1| - 0.00045 19.7 0.1 0.0018 17.7 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|433591505|ref|YP_007281001.1| - 0.0022 17.9 0.1 0.011 15.6 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|433591505|ref|YP_007281001.1| - 0.0091 15.7 0.0 1.3 8.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|433591505|ref|YP_007281001.1| - 0.013 15.4 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|433591505|ref|YP_007281001.1| - 0.016 15.5 0.0 0.047 14.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|433591505|ref|YP_007281001.1| - 0.017 15.5 0.1 0.042 14.2 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|433591505|ref|YP_007281001.1| - 0.018 14.7 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|433591505|ref|YP_007281001.1| - 0.019 15.1 0.3 0.05 13.8 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|433591505|ref|YP_007281001.1| - 0.031 14.0 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain TOBE PF03459.17 gi|433591505|ref|YP_007281001.1| - 0.039 14.3 0.0 13 6.2 0.0 3.3 2 1 0 2 2 2 0 TOBE domain RNA_helicase PF00910.22 gi|433591505|ref|YP_007281001.1| - 0.056 13.8 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|433591505|ref|YP_007281001.1| - 0.057 14.0 0.0 0.12 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|433591505|ref|YP_007281001.1| - 0.086 12.1 0.1 0.26 10.6 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.29 gi|433591505|ref|YP_007281001.1| - 0.09 13.2 0.1 0.27 11.6 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) GFO_IDH_MocA PF01408.22 gi|433591506|ref|YP_007281002.1| - 7.1e-24 84.9 0.0 1.3e-23 84.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|433591506|ref|YP_007281002.1| - 3e-09 36.9 0.0 6.7e-09 35.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|433591506|ref|YP_007281002.1| - 0.00052 19.4 0.0 0.00094 18.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|433591506|ref|YP_007281002.1| - 0.0038 17.4 0.0 0.012 15.8 0.0 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|433591506|ref|YP_007281002.1| - 0.0051 16.4 0.0 0.0095 15.5 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|433591506|ref|YP_007281002.1| - 0.0061 17.1 0.0 0.013 16.0 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.19 gi|433591506|ref|YP_007281002.1| - 0.015 16.0 0.0 0.03 15.0 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain NAD_binding_3 PF03447.16 gi|433591506|ref|YP_007281002.1| - 0.075 13.7 0.0 0.16 12.7 0.0 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain AP_endonuc_2 PF01261.24 gi|433591507|ref|YP_007281003.1| - 1.5e-33 116.0 3.0 1.8e-33 115.8 2.2 1.5 1 1 0 2 2 2 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|433591507|ref|YP_007281003.1| - 7.4e-21 73.6 0.1 1.7e-20 72.5 0.1 1.7 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus DUF3122 PF11320.8 gi|433591507|ref|YP_007281003.1| - 0.066 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3122) HalOD1 PF18545.1 gi|433591508|ref|YP_007281004.1| - 3.3e-23 81.7 0.6 4.5e-23 81.3 0.6 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 YbjQ_1 PF01906.17 gi|433591508|ref|YP_007281004.1| - 0.034 14.8 0.0 0.039 14.6 0.0 1.2 1 0 0 1 1 1 0 Putative heavy-metal-binding FAD_binding_7 PF03441.14 gi|433591509|ref|YP_007281005.1| - 1.3e-77 259.9 2.3 1.7e-77 259.5 2.3 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|433591509|ref|YP_007281005.1| - 9.5e-48 162.3 0.7 2.6e-47 160.9 0.3 1.9 2 0 0 2 2 2 1 DNA photolyase Tubulin PF00091.25 gi|433591510|ref|YP_007281006.1| - 1.3e-26 94.0 0.0 2.4e-26 93.2 0.0 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|433591510|ref|YP_007281006.1| - 0.0074 15.5 0.3 0.029 13.6 0.3 1.8 1 1 0 2 2 2 1 Tubulin like Lactamase_B PF00753.27 gi|433591511|ref|YP_007281007.1| - 7.8e-19 68.5 6.6 1.3e-18 67.7 6.6 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433591511|ref|YP_007281007.1| - 0.0078 15.7 0.3 0.012 15.2 0.3 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TrmB PF01978.19 gi|433591511|ref|YP_007281007.1| - 0.03 14.2 0.0 0.13 12.1 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB ECR1_N PF14382.6 gi|433591511|ref|YP_007281007.1| - 0.079 12.8 0.0 0.96 9.3 0.0 2.3 2 0 0 2 2 2 0 Exosome complex exonuclease RRP4 N-terminal region MAF_flag10 PF01973.18 gi|433591512|ref|YP_007281008.1| - 1e-19 70.9 0.0 1.3e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Pterin_bind PF00809.22 gi|433591513|ref|YP_007281009.1| - 2.8e-40 138.5 0.1 3.9e-40 138.1 0.1 1.2 1 0 0 1 1 1 1 Pterin binding enzyme AMP-binding PF00501.28 gi|433591514|ref|YP_007281010.1| - 6.4e-26 90.9 0.0 1.7e-25 89.5 0.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme Cdc6_C PF09079.11 gi|433591515|ref|YP_007281011.1| - 4.2e-19 68.3 0.1 8.6e-19 67.3 0.1 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|433591515|ref|YP_007281011.1| - 3.8e-14 53.1 0.1 1.2e-13 51.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433591515|ref|YP_007281011.1| - 4.1e-08 33.8 0.8 1.9e-07 31.6 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|433591515|ref|YP_007281011.1| - 4.4e-05 23.9 0.0 0.00016 22.1 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|433591515|ref|YP_007281011.1| - 0.00026 21.0 0.3 0.0025 17.8 0.3 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|433591515|ref|YP_007281011.1| - 0.0008 19.1 0.2 0.0022 17.7 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain PhoH PF02562.16 gi|433591515|ref|YP_007281011.1| - 0.0012 18.3 0.1 0.046 13.2 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_32 PF13654.6 gi|433591515|ref|YP_007281011.1| - 0.0013 17.6 0.3 0.39 9.4 0.4 2.4 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|433591515|ref|YP_007281011.1| - 0.0016 17.7 0.0 0.0036 16.5 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF815) TniB PF05621.11 gi|433591515|ref|YP_007281011.1| - 0.0026 17.2 0.0 0.014 14.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial TniB protein FtsK_SpoIIIE PF01580.18 gi|433591515|ref|YP_007281011.1| - 0.0032 16.9 0.0 0.033 13.5 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_30 PF13604.6 gi|433591515|ref|YP_007281011.1| - 0.0041 16.9 0.1 0.034 13.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.25 gi|433591515|ref|YP_007281011.1| - 0.0055 16.4 0.0 0.0087 15.7 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.22 gi|433591515|ref|YP_007281011.1| - 0.0061 15.8 0.0 0.011 14.9 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain PIF1 PF05970.14 gi|433591515|ref|YP_007281011.1| - 0.011 14.9 0.1 0.048 12.8 0.0 2.0 2 0 0 2 2 2 0 PIF1-like helicase DUF87 PF01935.17 gi|433591515|ref|YP_007281011.1| - 0.02 15.0 2.1 0.096 12.8 0.0 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain IstB_IS21 PF01695.17 gi|433591515|ref|YP_007281011.1| - 0.032 14.0 0.1 0.65 9.7 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein Arf PF00025.21 gi|433591515|ref|YP_007281011.1| - 0.044 13.2 0.0 0.078 12.4 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family DEAD PF00270.29 gi|433591515|ref|YP_007281011.1| - 0.05 13.4 1.0 4.1 7.1 0.2 2.6 1 1 0 2 2 2 0 DEAD/DEAH box helicase PCP_red PF08369.10 gi|433591515|ref|YP_007281011.1| - 0.074 13.3 0.2 0.23 11.7 0.1 1.9 2 0 0 2 2 1 0 Proto-chlorophyllide reductase 57 kD subunit ABC_tran PF00005.27 gi|433591515|ref|YP_007281011.1| - 0.079 13.5 0.2 0.24 11.9 0.2 2.1 1 1 0 1 1 1 0 ABC transporter AAA_assoc_2 PF16193.5 gi|433591515|ref|YP_007281011.1| - 0.084 13.2 1.4 0.23 11.8 0.7 2.0 1 1 1 2 2 2 0 AAA C-terminal domain AAA_7 PF12775.7 gi|433591515|ref|YP_007281011.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|433591515|ref|YP_007281011.1| - 0.12 12.8 0.0 0.5 10.8 0.0 2.1 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.12 gi|433591515|ref|YP_007281011.1| - 0.14 12.1 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DDE_5 PF13546.6 gi|433591516|ref|YP_007281012.1| - 8.6e-27 94.2 0.0 1.4e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|433591516|ref|YP_007281012.1| - 2.5e-12 46.9 0.0 3.8e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433591516|ref|YP_007281012.1| - 0.00016 21.0 0.0 0.00069 18.9 0.0 1.9 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 SpoU_methylase PF00588.19 gi|433591517|ref|YP_007281013.1| - 6.4e-28 97.7 0.0 8.8e-28 97.2 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Lactamase_B_6 PF16661.5 gi|433591517|ref|YP_007281013.1| - 0.18 11.3 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Glyco_hydro_49N PF17433.2 gi|433591518|ref|YP_007281014.1| - 0.051 13.2 0.2 0.43 10.2 0.1 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 49 N-terminal Ig-like domain RHH_5 PF07878.11 gi|433591519|ref|YP_007281015.1| - 0.12 12.2 0.1 0.25 11.2 0.1 1.5 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 TF_Zn_Ribbon PF08271.12 gi|433591519|ref|YP_007281015.1| - 0.14 11.7 1.8 0.4 10.2 1.8 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|433591519|ref|YP_007281015.1| - 0.15 12.0 0.1 0.62 10.0 0.1 2.0 1 0 0 1 1 1 0 Putative transposase DNA-binding domain EamA PF00892.20 gi|433591520|ref|YP_007281016.1| - 1.8e-35 122.1 38.5 1.2e-17 64.3 12.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family Phage_holin_2_1 PF04971.12 gi|433591520|ref|YP_007281016.1| - 0.29 11.2 2.8 0.48 10.5 0.2 2.6 2 0 0 2 2 2 0 Bacteriophage P21 holin S AsnC_trans_reg PF01037.21 gi|433591521|ref|YP_007281017.1| - 9.2e-12 44.8 0.4 1.6e-11 44.0 0.4 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_IclR PF09339.10 gi|433591521|ref|YP_007281017.1| - 6.8e-06 25.8 0.0 1.6e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433591521|ref|YP_007281017.1| - 4.1e-05 23.1 0.2 0.00018 21.0 0.2 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|433591521|ref|YP_007281017.1| - 8.5e-05 22.4 0.1 0.0024 17.7 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|433591521|ref|YP_007281017.1| - 0.00019 21.4 0.0 0.00058 19.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433591521|ref|YP_007281017.1| - 0.034 14.0 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433591521|ref|YP_007281017.1| - 0.041 13.8 0.0 1.2 9.1 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|433591521|ref|YP_007281017.1| - 0.052 14.1 0.1 0.12 12.9 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain GYD PF08734.11 gi|433591521|ref|YP_007281017.1| - 0.076 13.0 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 GYD domain Nfu_N PF08712.11 gi|433591521|ref|YP_007281017.1| - 0.15 12.1 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal GatB_N PF02934.15 gi|433591522|ref|YP_007281018.1| - 4.3e-66 223.1 0.0 7.2e-66 222.4 0.0 1.3 1 1 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|433591522|ref|YP_007281018.1| - 2.3e-22 79.5 0.0 6.1e-22 78.1 0.0 1.7 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|433591522|ref|YP_007281018.1| - 1.5e-14 54.0 0.0 3.2e-14 52.9 0.0 1.6 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|433591522|ref|YP_007281018.1| - 0.0021 18.1 0.3 0.0057 16.7 0.3 1.7 1 0 0 1 1 1 1 Yqey-like protein ABC_tran PF00005.27 gi|433591523|ref|YP_007281019.1| - 1.8e-34 119.2 0.0 2.6e-34 118.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433591523|ref|YP_007281019.1| - 1.3e-08 35.0 2.3 0.00014 21.8 0.1 2.4 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|433591523|ref|YP_007281019.1| - 0.0002 20.9 0.1 0.0031 17.0 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|433591523|ref|YP_007281019.1| - 0.0002 21.9 0.0 0.00027 21.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433591523|ref|YP_007281019.1| - 0.0091 16.4 0.5 0.027 14.9 0.5 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|433591523|ref|YP_007281019.1| - 0.0097 15.6 0.2 0.062 13.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|433591523|ref|YP_007281019.1| - 0.011 15.7 0.0 0.028 14.3 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA PF00004.29 gi|433591523|ref|YP_007281019.1| - 0.015 15.7 0.0 0.078 13.4 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|433591523|ref|YP_007281019.1| - 0.019 14.7 0.0 0.089 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|433591523|ref|YP_007281019.1| - 0.034 13.4 0.0 0.066 12.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_29 PF13555.6 gi|433591523|ref|YP_007281019.1| - 0.054 13.2 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|433591523|ref|YP_007281019.1| - 0.064 13.5 0.0 0.16 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain Peptidase_U40 PF10464.9 gi|433591523|ref|YP_007281019.1| - 0.072 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Peptidase U40 DUF3584 PF12128.8 gi|433591523|ref|YP_007281019.1| - 0.079 10.5 0.0 0.11 10.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|433591523|ref|YP_007281019.1| - 0.084 11.5 0.0 0.91 8.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|433591523|ref|YP_007281019.1| - 0.092 12.9 0.0 0.39 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain FecCD PF01032.18 gi|433591524|ref|YP_007281020.1| - 1.3e-92 310.1 34.2 1.2e-91 307.0 32.6 2.0 1 1 1 2 2 2 2 FecCD transport family Amidase PF01425.21 gi|433591524|ref|YP_007281020.1| - 0.058 12.4 1.2 0.092 11.7 1.2 1.2 1 0 0 1 1 1 0 Amidase Peripla_BP_2 PF01497.18 gi|433591525|ref|YP_007281021.1| - 2.4e-27 96.0 1.8 3.5e-27 95.5 1.8 1.2 1 0 0 1 1 1 1 Periplasmic binding protein PGF-CTERM PF18204.1 gi|433591525|ref|YP_007281021.1| - 1.5e-05 24.8 9.2 3.5e-05 23.6 9.2 1.7 1 0 0 1 1 1 1 PGF-CTERM motif ThiP_synth PF10120.9 gi|433591525|ref|YP_007281021.1| - 0.0076 15.9 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 Thiamine-phosphate synthase Gram_pos_anchor PF00746.21 gi|433591525|ref|YP_007281021.1| - 0.43 10.6 3.0 1.3 9.0 3.0 1.8 1 0 0 1 1 1 0 LPXTG cell wall anchor motif SRP19 PF01922.17 gi|433591526|ref|YP_007281022.1| - 2e-24 86.3 0.0 2.3e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein HMA PF00403.26 gi|433591526|ref|YP_007281022.1| - 0.13 12.7 0.1 19 5.8 0.0 2.2 2 0 0 2 2 2 0 Heavy-metal-associated domain Gar1 PF04410.14 gi|433591527|ref|YP_007281023.1| - 3.3e-06 27.0 0.0 3.5e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SPP PF06550.11 gi|433591528|ref|YP_007281024.1| - 2e-82 276.9 26.2 3.4e-82 276.1 26.2 1.3 1 1 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|433591528|ref|YP_007281024.1| - 5.3e-07 29.5 4.3 6.6e-05 22.6 1.4 2.6 2 1 0 2 2 2 2 Signal peptide peptidase Presenilin PF01080.17 gi|433591528|ref|YP_007281024.1| - 0.0016 17.3 6.3 0.38 9.5 5.0 2.1 2 0 0 2 2 2 2 Presenilin HATPase_c PF02518.26 gi|433591529|ref|YP_007281025.1| - 8.5e-16 58.5 0.0 1.3e-14 54.6 0.0 2.3 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|433591529|ref|YP_007281025.1| - 2e-10 40.9 0.1 5.2e-10 39.5 0.1 1.8 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|433591529|ref|YP_007281025.1| - 2.3e-08 33.9 1.1 5.6e-08 32.7 1.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|433591529|ref|YP_007281025.1| - 0.02 15.1 0.0 0.13 12.5 0.0 2.2 2 0 0 2 2 2 0 PAS domain tRNA-synt_1e PF01406.19 gi|433591530|ref|YP_007281026.1| - 2.5e-107 358.7 0.1 2.8e-106 355.2 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|433591530|ref|YP_007281026.1| - 5.2e-13 49.3 0.4 3.5e-12 46.6 0.1 2.2 1 1 1 2 2 2 1 DALR domain tRNA-synt_1g PF09334.11 gi|433591530|ref|YP_007281026.1| - 1.1e-11 44.1 0.0 2.9e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|433591530|ref|YP_007281026.1| - 1.8e-09 37.0 0.1 5.2e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|433591530|ref|YP_007281026.1| - 0.001 17.5 0.0 0.01 14.1 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.19 gi|433591530|ref|YP_007281026.1| - 0.0076 15.2 0.0 0.036 13.0 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1c PF00749.21 gi|433591530|ref|YP_007281026.1| - 0.017 14.0 0.0 0.034 13.1 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain FTO_CTD PF12934.7 gi|433591530|ref|YP_007281026.1| - 0.019 14.7 0.1 0.035 13.9 0.1 1.4 1 0 0 1 1 1 0 FTO C-terminal domain UVR PF02151.19 gi|433591530|ref|YP_007281026.1| - 0.031 14.0 0.5 0.031 14.0 0.5 2.0 2 0 0 2 2 2 0 UvrB/uvrC motif SPOR PF05036.13 gi|433591530|ref|YP_007281026.1| - 0.12 12.8 0.2 4.3 7.8 0.0 2.5 2 0 0 2 2 2 0 Sporulation related domain Sec1 PF00995.23 gi|433591530|ref|YP_007281026.1| - 0.15 11.2 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 Sec1 family FUSC PF04632.12 gi|433591530|ref|YP_007281026.1| - 0.76 8.2 4.5 0.83 8.1 1.8 1.7 1 1 1 2 2 2 0 Fusaric acid resistance protein family HTH_20 PF12840.7 gi|433591532|ref|YP_007281028.1| - 9.5e-13 48.0 0.2 1.6e-12 47.3 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433591532|ref|YP_007281028.1| - 2.1e-08 33.9 0.1 4.2e-08 32.9 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433591532|ref|YP_007281028.1| - 9.3e-07 28.6 0.0 1.5e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|433591532|ref|YP_007281028.1| - 1.5e-06 28.0 0.0 2.4e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|433591532|ref|YP_007281028.1| - 0.00011 22.3 0.0 0.00016 21.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|433591532|ref|YP_007281028.1| - 0.0014 19.1 0.1 0.0021 18.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|433591532|ref|YP_007281028.1| - 0.0016 18.6 0.0 0.0035 17.5 0.0 1.6 1 1 1 2 2 2 1 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|433591532|ref|YP_007281028.1| - 0.0016 18.2 0.0 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|433591532|ref|YP_007281028.1| - 0.0041 17.0 0.1 0.0053 16.6 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.6 gi|433591532|ref|YP_007281028.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|433591532|ref|YP_007281028.1| - 0.034 14.1 0.0 0.047 13.6 0.0 1.2 1 0 0 1 1 1 0 HTH domain DUF2513 PF10711.9 gi|433591532|ref|YP_007281028.1| - 0.062 13.6 0.0 0.078 13.3 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) PadR PF03551.14 gi|433591532|ref|YP_007281028.1| - 0.063 13.3 0.2 0.11 12.5 0.2 1.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.19 gi|433591532|ref|YP_007281028.1| - 0.12 12.6 0.2 0.33 11.2 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_micro PF17007.5 gi|433591532|ref|YP_007281028.1| - 0.16 10.7 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 HTH-like NifU PF01106.17 gi|433591534|ref|YP_007281030.1| - 1.4e-11 44.4 0.0 1.9e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain Ald_Xan_dh_C2 PF02738.18 gi|433591534|ref|YP_007281030.1| - 0.11 10.9 0.1 0.12 10.8 0.1 1.0 1 0 0 1 1 1 0 Molybdopterin-binding domain of aldehyde dehydrogenase FeS_assembly_P PF01883.19 gi|433591534|ref|YP_007281030.1| - 0.15 12.3 0.3 0.69 10.1 0.1 1.9 2 0 0 2 2 2 0 Iron-sulfur cluster assembly protein BolA PF01722.18 gi|433591535|ref|YP_007281031.1| - 1.3e-18 67.0 0.0 1.5e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Usp PF00582.26 gi|433591536|ref|YP_007281032.1| - 3.4e-20 73.0 3.0 4.1e-20 72.7 3.0 1.1 1 0 0 1 1 1 1 Universal stress protein family bPH_2 PF03703.14 gi|433591537|ref|YP_007281033.1| - 2e-14 53.5 0.0 3e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF2244 PF10003.9 gi|433591537|ref|YP_007281033.1| - 0.22 11.2 4.0 0.33 10.6 4.0 1.3 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) UPF0182 PF03699.13 gi|433591537|ref|YP_007281033.1| - 0.34 9.0 1.4 0.39 8.8 1.4 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF202 PF02656.15 gi|433591537|ref|YP_007281033.1| - 0.79 10.2 5.9 1.8 9.0 5.9 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF202) bPH_2 PF03703.14 gi|433591538|ref|YP_007281034.1| - 2.4e-54 181.4 1.9 1.8e-21 76.1 0.2 3.3 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|433591538|ref|YP_007281034.1| - 1.4e-07 31.4 0.0 0.056 13.5 0.0 3.3 3 0 0 3 3 3 2 Bacterial PH domain bPH_3 PF14470.6 gi|433591538|ref|YP_007281034.1| - 0.0024 18.2 0.0 0.84 10.0 0.0 2.5 2 0 0 2 2 2 2 Bacterial PH domain bPH_5 PF10882.8 gi|433591538|ref|YP_007281034.1| - 0.012 15.7 0.0 4.5 7.4 0.0 3.0 3 0 0 3 3 3 0 Bacterial PH domain PsbX PF06596.11 gi|433591538|ref|YP_007281034.1| - 4.3 7.4 6.9 1.3 9.1 0.6 2.7 2 0 0 2 2 2 0 Photosystem II reaction centre X protein (PsbX) Lyase_1 PF00206.20 gi|433591539|ref|YP_007281035.1| - 3.1e-108 361.9 0.1 4.3e-108 361.4 0.1 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|433591539|ref|YP_007281035.1| - 4.6e-22 78.2 0.4 4.6e-22 78.2 0.4 2.3 2 0 0 2 2 2 1 Fumarase C C-terminus DUF21 PF01595.20 gi|433591540|ref|YP_007281036.1| - 2.6e-29 102.2 0.1 3.8e-29 101.6 0.1 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|433591540|ref|YP_007281036.1| - 2.5e-11 43.9 0.3 1.1e-09 38.6 0.0 2.4 2 0 0 2 2 2 1 CBS domain zf-C2HC_2 PF13913.6 gi|433591541|ref|YP_007281037.1| - 0.0014 18.5 1.3 0.16 11.9 0.2 2.3 2 0 0 2 2 2 1 zinc-finger of a C2HC-type GATA PF00320.27 gi|433591541|ref|YP_007281037.1| - 0.0054 16.3 1.5 0.016 14.8 1.5 1.7 1 1 0 1 1 1 1 GATA zinc finger zf-C2H2 PF00096.26 gi|433591541|ref|YP_007281037.1| - 0.025 15.0 8.3 0.17 12.4 0.4 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type HNH_5 PF14279.6 gi|433591541|ref|YP_007281037.1| - 0.027 14.3 3.4 0.32 10.9 0.8 2.2 1 1 1 2 2 2 0 HNH endonuclease Rhodanese_C PF12368.8 gi|433591541|ref|YP_007281037.1| - 0.03 14.7 6.9 0.85 10.0 7.7 2.0 1 1 1 2 2 2 0 Rhodanase C-terminal zf-C3HC4_2 PF13923.6 gi|433591541|ref|YP_007281037.1| - 0.14 12.0 3.1 0.15 12.0 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Elf1 PF05129.13 gi|433591541|ref|YP_007281037.1| - 0.15 12.1 3.4 1.6 8.8 3.4 2.1 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C2H2_6 PF13912.6 gi|433591541|ref|YP_007281037.1| - 0.15 12.1 9.9 0.36 10.9 1.0 2.8 3 0 0 3 3 3 0 C2H2-type zinc finger zf_UBZ PF18439.1 gi|433591541|ref|YP_007281037.1| - 0.17 11.5 6.1 1 9.0 0.2 2.7 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-C2H2_4 PF13894.6 gi|433591541|ref|YP_007281037.1| - 0.35 11.8 8.5 2.4 9.2 1.3 2.8 3 0 0 3 3 3 0 C2H2-type zinc finger zf-HIT PF04438.16 gi|433591541|ref|YP_007281037.1| - 0.38 10.7 4.1 15 5.6 0.1 3.0 3 0 0 3 3 3 0 HIT zinc finger DZR PF12773.7 gi|433591541|ref|YP_007281037.1| - 0.45 10.6 6.9 3.9 7.6 6.9 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-H2C2_2 PF13465.6 gi|433591541|ref|YP_007281037.1| - 0.73 10.4 3.7 32 5.2 0.1 3.2 3 0 0 3 3 3 0 Zinc-finger double domain C1_2 PF03107.16 gi|433591541|ref|YP_007281037.1| - 1.1 9.7 9.1 0.091 13.1 2.9 2.0 1 1 1 2 2 2 0 C1 domain bPH_2 PF03703.14 gi|433591544|ref|YP_007281040.1| - 9.9e-18 64.1 0.1 1.5e-17 63.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain VirB3 PF05101.13 gi|433591544|ref|YP_007281040.1| - 0.33 11.2 4.4 0.17 12.2 1.4 1.9 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein bPH_2 PF03703.14 gi|433591545|ref|YP_007281041.1| - 1.5e-47 159.6 3.5 4.1e-20 71.8 0.2 3.3 3 0 0 3 3 3 3 Bacterial PH domain Phage_integrase PF00589.22 gi|433591546|ref|YP_007281042.1| - 1.3e-15 57.6 0.0 4e-15 56.0 0.0 1.7 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|433591546|ref|YP_007281042.1| - 2.5e-09 37.3 1.7 5.3e-09 36.3 0.7 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|433591546|ref|YP_007281042.1| - 1.2e-06 28.8 0.6 4.9e-06 26.9 0.6 2.0 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|433591546|ref|YP_007281042.1| - 0.0044 16.9 0.1 0.18 11.7 0.0 2.2 2 0 0 2 2 2 1 Archaeal phage integrase Phage_int_SAM_5 PF13102.6 gi|433591546|ref|YP_007281042.1| - 0.071 13.5 0.2 0.35 11.2 0.1 2.2 2 0 0 2 2 2 0 Phage integrase SAM-like domain Ribosomal_L18 PF17135.4 gi|433591546|ref|YP_007281042.1| - 0.085 12.2 0.0 0.19 11.1 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein 60S L18 and 50S L18e Pup PF05639.11 gi|433591547|ref|YP_007281043.1| - 1.5 9.8 8.5 29 5.7 5.5 2.5 2 1 0 2 2 2 0 Pup-like protein Phage_integrase PF00589.22 gi|433591548|ref|YP_007281044.1| - 5.1e-18 65.4 0.0 8.5e-18 64.7 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|433591548|ref|YP_007281044.1| - 8.1e-06 26.1 1.3 3.3e-05 24.1 0.6 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|433591548|ref|YP_007281044.1| - 0.00023 21.6 0.3 0.0021 18.5 0.5 2.2 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|433591548|ref|YP_007281044.1| - 0.12 12.3 0.0 0.5 10.3 0.0 1.9 2 0 0 2 2 2 0 Archaeal phage integrase Peptidase_A4 PF01828.17 gi|433591549|ref|YP_007281045.1| - 0.094 12.2 3.2 0.11 11.9 0.7 1.9 1 1 0 2 2 2 0 Peptidase A4 family GPI-anchored PF10342.9 gi|433591549|ref|YP_007281045.1| - 0.1 13.4 1.3 0.26 12.1 0.6 1.8 2 0 0 2 2 2 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family DUF2141 PF09912.9 gi|433591549|ref|YP_007281045.1| - 0.16 11.9 0.1 2.1 8.3 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2141) PQQ_2 PF13360.6 gi|433591551|ref|YP_007281047.1| - 9.7e-37 126.8 8.1 8.6e-33 113.9 4.5 2.8 2 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|433591551|ref|YP_007281047.1| - 7.4e-30 102.6 26.9 6.9e-07 29.6 0.0 8.7 9 0 0 9 9 9 7 PQQ-like domain PQQ PF01011.21 gi|433591551|ref|YP_007281047.1| - 7e-22 76.3 11.4 0.0049 16.7 0.2 7.6 7 0 0 7 7 7 6 PQQ enzyme repeat DUF3618 PF12277.8 gi|433591552|ref|YP_007281048.1| - 0.063 13.5 0.3 0.16 12.3 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) Lambda_CIII PF02061.16 gi|433591552|ref|YP_007281048.1| - 0.18 11.9 0.0 0.46 10.6 0.0 1.7 1 0 0 1 1 1 0 Lambda Phage CIII DUF1664 PF07889.12 gi|433591553|ref|YP_007281049.1| - 1.7e-09 37.8 13.5 0.0001 22.4 4.9 3.3 1 1 3 4 4 4 2 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|433591553|ref|YP_007281049.1| - 4.1e-08 32.4 2.6 8.9e-08 31.3 2.6 1.4 1 0 0 1 1 1 1 AAA domain MscS_porin PF12795.7 gi|433591553|ref|YP_007281049.1| - 1.6e-06 27.9 0.7 1.6e-05 24.6 0.3 2.4 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain FlaC_arch PF05377.11 gi|433591553|ref|YP_007281049.1| - 2e-06 28.1 20.8 0.042 14.3 1.6 4.2 3 1 1 4 4 3 3 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|433591553|ref|YP_007281049.1| - 4.2e-06 25.9 11.5 9.6e-06 24.7 3.8 2.4 1 1 1 2 2 2 2 Spc7 kinetochore protein Laminin_II PF06009.12 gi|433591553|ref|YP_007281049.1| - 2.2e-05 24.5 13.1 0.00043 20.3 5.2 3.1 2 1 1 3 3 2 2 Laminin Domain II Baculo_PEP_C PF04513.12 gi|433591553|ref|YP_007281049.1| - 3.1e-05 24.1 5.0 0.012 15.6 1.0 2.5 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.9 gi|433591553|ref|YP_007281049.1| - 3.9e-05 23.7 19.3 0.0003 20.8 3.8 3.6 2 1 1 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMF_TATA_bd PF12325.8 gi|433591553|ref|YP_007281049.1| - 6.7e-05 23.1 11.9 0.0007 19.8 3.7 3.4 1 1 1 2 2 2 1 TATA element modulatory factor 1 TATA binding COG6 PF06419.11 gi|433591553|ref|YP_007281049.1| - 7.3e-05 21.2 2.3 0.048 11.9 0.3 2.1 2 0 0 2 2 2 2 Conserved oligomeric complex COG6 Laminin_I PF06008.14 gi|433591553|ref|YP_007281049.1| - 0.00011 22.0 1.8 0.043 13.5 0.3 2.5 1 1 1 2 2 2 2 Laminin Domain I NPV_P10 PF05531.12 gi|433591553|ref|YP_007281049.1| - 0.00011 22.6 28.3 0.022 15.2 8.9 4.5 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein zf-C4H2 PF10146.9 gi|433591553|ref|YP_007281049.1| - 0.00014 22.3 3.8 0.00014 22.3 3.8 3.0 3 1 1 4 4 2 1 Zinc finger-containing protein HemX PF04375.14 gi|433591553|ref|YP_007281049.1| - 0.00028 20.3 0.8 0.44 9.8 0.1 2.5 1 1 1 2 2 2 2 HemX, putative uroporphyrinogen-III C-methyltransferase ADIP PF11559.8 gi|433591553|ref|YP_007281049.1| - 0.00028 21.0 0.0 0.15 12.2 0.0 2.5 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding DivIC PF04977.15 gi|433591553|ref|YP_007281049.1| - 0.00028 20.6 13.1 0.69 9.7 0.5 4.0 1 1 3 4 4 4 2 Septum formation initiator EzrA PF06160.12 gi|433591553|ref|YP_007281049.1| - 0.00042 18.6 8.4 0.0012 17.1 8.4 1.6 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Sec34 PF04136.15 gi|433591553|ref|YP_007281049.1| - 0.00043 20.2 3.5 0.046 13.6 0.4 2.9 1 1 1 2 2 2 1 Sec34-like family GAS PF13851.6 gi|433591553|ref|YP_007281049.1| - 0.00047 19.6 1.7 0.018 14.4 0.4 2.2 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding DUF3450 PF11932.8 gi|433591553|ref|YP_007281049.1| - 0.00054 19.3 6.6 0.0022 17.4 1.1 2.9 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) FH2 PF02181.23 gi|433591553|ref|YP_007281049.1| - 0.00084 18.6 5.2 0.0057 15.8 1.4 2.1 2 0 0 2 2 2 1 Formin Homology 2 Domain CCDC144C PF14915.6 gi|433591553|ref|YP_007281049.1| - 0.0013 17.9 1.5 0.0034 16.5 1.5 1.6 1 1 0 1 1 1 1 CCDC144C protein coiled-coil region Fez1 PF06818.15 gi|433591553|ref|YP_007281049.1| - 0.0018 18.8 2.3 0.0018 18.8 2.3 3.0 2 1 1 3 3 2 1 Fez1 Prefoldin_2 PF01920.20 gi|433591553|ref|YP_007281049.1| - 0.0019 18.1 9.6 0.36 10.8 3.1 4.2 1 1 1 3 3 3 1 Prefoldin subunit DUF2730 PF10805.8 gi|433591553|ref|YP_007281049.1| - 0.0024 17.9 11.5 0.52 10.4 1.9 3.7 1 1 3 4 4 4 2 Protein of unknown function (DUF2730) Fib_alpha PF08702.10 gi|433591553|ref|YP_007281049.1| - 0.0028 17.9 2.1 0.013 15.7 0.6 2.3 1 1 2 3 3 3 2 Fibrinogen alpha/beta chain family HMMR_N PF15905.5 gi|433591553|ref|YP_007281049.1| - 0.0031 17.1 5.9 0.006 16.1 5.4 1.7 1 1 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal DUF2203 PF09969.9 gi|433591553|ref|YP_007281049.1| - 0.0031 18.2 4.4 1.2 9.9 0.2 2.9 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2203) XhlA PF10779.9 gi|433591553|ref|YP_007281049.1| - 0.0032 17.7 3.7 0.0032 17.7 3.7 4.4 3 2 1 4 4 3 1 Haemolysin XhlA Leu_zip PF15294.6 gi|433591553|ref|YP_007281049.1| - 0.0037 16.8 2.6 0.01 15.3 2.6 1.8 1 0 0 1 1 1 1 Leucine zipper DUF4795 PF16043.5 gi|433591553|ref|YP_007281049.1| - 0.0047 16.6 9.3 0.025 14.2 9.4 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4795) DUF2968 PF11180.8 gi|433591553|ref|YP_007281049.1| - 0.0055 16.4 0.8 2.6 7.6 0.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) Swi5 PF07061.11 gi|433591553|ref|YP_007281049.1| - 0.0072 16.4 2.5 2.9 8.1 0.0 4.2 3 1 1 4 4 3 0 Swi5 COG2 PF06148.11 gi|433591553|ref|YP_007281049.1| - 0.0077 16.3 10.4 0.32 11.1 5.7 3.2 1 1 1 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 THOC7 PF05615.13 gi|433591553|ref|YP_007281049.1| - 0.011 16.0 5.6 0.86 9.9 5.6 3.0 1 1 0 1 1 1 0 Tho complex subunit 7 Spectrin PF00435.21 gi|433591553|ref|YP_007281049.1| - 0.014 15.8 12.6 0.87 10.1 4.1 3.7 2 1 1 3 3 2 0 Spectrin repeat HOOK PF05622.12 gi|433591553|ref|YP_007281049.1| - 0.014 13.5 7.5 0.025 12.8 7.5 1.4 1 0 0 1 1 1 0 HOOK protein BLOC1_2 PF10046.9 gi|433591553|ref|YP_007281049.1| - 0.017 15.4 11.4 1.8 8.9 0.9 3.4 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4618 PF15397.6 gi|433591553|ref|YP_007281049.1| - 0.017 14.6 5.2 1.2 8.5 0.1 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) KASH_CCD PF14662.6 gi|433591553|ref|YP_007281049.1| - 0.018 14.9 5.1 0.49 10.2 0.7 2.3 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH HAUS-augmin3 PF14932.6 gi|433591553|ref|YP_007281049.1| - 0.021 14.4 9.1 0.021 14.4 0.7 2.7 2 1 1 3 3 2 0 HAUS augmin-like complex subunit 3 DUF16 PF01519.16 gi|433591553|ref|YP_007281049.1| - 0.023 15.2 10.0 0.34 11.4 2.3 3.3 1 1 2 3 3 3 0 Protein of unknown function DUF16 DUF4201 PF13870.6 gi|433591553|ref|YP_007281049.1| - 0.026 14.3 0.2 0.11 12.2 0.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) ZapB PF06005.12 gi|433591553|ref|YP_007281049.1| - 0.027 14.9 2.3 14 6.2 0.4 3.5 1 1 2 3 3 3 0 Cell division protein ZapB Rootletin PF15035.6 gi|433591553|ref|YP_007281049.1| - 0.027 14.5 5.6 0.29 11.1 4.2 2.6 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Prefoldin PF02996.17 gi|433591553|ref|YP_007281049.1| - 0.027 14.4 7.3 2.2 8.2 0.2 3.9 2 2 1 4 4 3 0 Prefoldin subunit Mod_r PF07200.13 gi|433591553|ref|YP_007281049.1| - 0.028 14.5 2.8 1.6 8.8 0.9 2.8 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF724 PF05266.14 gi|433591553|ref|YP_007281049.1| - 0.034 14.0 0.3 0.034 14.0 0.3 2.6 2 1 1 3 3 2 0 Protein of unknown function (DUF724) YabA PF06156.13 gi|433591553|ref|YP_007281049.1| - 0.037 14.7 0.9 18 6.0 0.1 3.2 1 1 1 2 2 2 0 Initiation control protein YabA Golgin_A5 PF09787.9 gi|433591553|ref|YP_007281049.1| - 0.039 13.4 9.6 0.056 12.9 7.2 2.2 1 1 1 2 2 2 0 Golgin subfamily A member 5 TolA_bind_tri PF16331.5 gi|433591553|ref|YP_007281049.1| - 0.045 13.8 5.2 4.1 7.6 0.2 3.3 1 1 1 3 3 3 0 TolA binding protein trimerisation CEP63 PF17045.5 gi|433591553|ref|YP_007281049.1| - 0.046 13.6 1.6 0.089 12.7 1.6 1.5 1 0 0 1 1 1 0 Centrosomal protein of 63 kDa Prominin PF05478.11 gi|433591553|ref|YP_007281049.1| - 0.047 11.7 0.3 0.087 10.8 0.3 1.4 1 0 0 1 1 1 0 Prominin TMPIT PF07851.13 gi|433591553|ref|YP_007281049.1| - 0.051 12.8 0.2 0.43 9.8 0.1 1.9 1 1 1 2 2 2 0 TMPIT-like protein DUF2353 PF09789.9 gi|433591553|ref|YP_007281049.1| - 0.054 12.9 6.5 0.27 10.6 6.5 1.9 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Atg14 PF10186.9 gi|433591553|ref|YP_007281049.1| - 0.058 12.5 0.0 5.3 6.0 0.0 2.0 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF948 PF06103.11 gi|433591553|ref|YP_007281049.1| - 0.058 13.7 21.6 0.65 10.3 5.2 4.2 2 1 2 4 4 3 0 Bacterial protein of unknown function (DUF948) TMF_DNA_bd PF12329.8 gi|433591553|ref|YP_007281049.1| - 0.081 12.9 7.2 16 5.6 0.3 3.8 2 2 0 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF4200 PF13863.6 gi|433591553|ref|YP_007281049.1| - 0.093 13.1 1.4 13 6.2 0.1 3.4 2 1 0 3 3 3 0 Domain of unknown function (DUF4200) Sulfatase_C PF14707.6 gi|433591553|ref|YP_007281049.1| - 0.12 13.1 0.8 3.1 8.6 0.1 3.1 2 1 1 3 3 2 0 C-terminal region of aryl-sulfatase Filament PF00038.21 gi|433591553|ref|YP_007281049.1| - 0.13 11.9 11.4 0.22 11.1 4.7 2.4 1 1 1 2 2 2 0 Intermediate filament protein Bacillus_HBL PF05791.11 gi|433591553|ref|YP_007281049.1| - 0.14 12.0 6.0 1.7 8.5 0.9 2.5 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) PI3K_P85_iSH2 PF16454.5 gi|433591553|ref|YP_007281049.1| - 0.14 11.7 0.1 6.9 6.2 0.1 2.5 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Cluap1 PF10234.9 gi|433591553|ref|YP_007281049.1| - 0.15 11.4 6.5 2.4 7.5 1.8 2.9 1 1 1 2 2 2 0 Clusterin-associated protein-1 Cnn_1N PF07989.11 gi|433591553|ref|YP_007281049.1| - 0.15 12.2 5.3 3.3 7.9 0.3 3.4 1 1 1 3 3 3 0 Centrosomin N-terminal motif 1 DASH_Dam1 PF08653.10 gi|433591553|ref|YP_007281049.1| - 0.16 11.8 3.8 0.75 9.6 0.0 3.8 2 1 3 5 5 3 0 DASH complex subunit Dam1 Vps53_N PF04100.12 gi|433591553|ref|YP_007281049.1| - 0.16 10.9 14.9 0.25 10.3 0.7 2.1 2 0 0 2 2 2 0 Vps53-like, N-terminal Lebercilin PF15619.6 gi|433591553|ref|YP_007281049.1| - 0.18 11.5 0.3 0.97 9.1 0.3 2.0 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease SHE3 PF17078.5 gi|433591553|ref|YP_007281049.1| - 0.21 11.2 3.3 0.92 9.2 3.2 1.9 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 DUF241 PF03087.14 gi|433591553|ref|YP_007281049.1| - 0.25 11.1 14.3 0.14 11.9 0.3 3.1 1 1 1 2 2 2 0 Arabidopsis protein of unknown function BST2 PF16716.5 gi|433591553|ref|YP_007281049.1| - 0.25 11.9 2.0 9.7 6.9 0.2 3.1 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 JIP_LZII PF16471.5 gi|433591553|ref|YP_007281049.1| - 0.31 11.2 13.4 2.6 8.3 0.4 4.8 2 1 3 5 5 5 0 JNK-interacting protein leucine zipper II TACC_C PF05010.14 gi|433591553|ref|YP_007281049.1| - 0.33 10.7 6.0 6.6 6.5 1.0 2.4 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF5082 PF16888.5 gi|433591553|ref|YP_007281049.1| - 0.33 11.2 10.0 11 6.3 9.4 3.0 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) HIP1_clath_bdg PF16515.5 gi|433591553|ref|YP_007281049.1| - 0.36 11.5 5.8 8.4 7.1 0.3 3.3 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 V_ATPase_I PF01496.19 gi|433591553|ref|YP_007281049.1| - 0.36 8.7 1.6 2.1 6.1 1.2 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF812 PF05667.11 gi|433591553|ref|YP_007281049.1| - 0.47 9.3 14.9 38 3.0 14.9 2.8 1 1 0 1 1 1 0 Protein of unknown function (DUF812) TPR_MLP1_2 PF07926.12 gi|433591553|ref|YP_007281049.1| - 0.48 10.5 15.2 0.15 12.1 1.6 3.5 2 1 0 3 3 2 0 TPR/MLP1/MLP2-like protein Snapin_Pallidin PF14712.6 gi|433591553|ref|YP_007281049.1| - 0.68 10.4 3.5 40 4.7 0.7 3.1 1 1 3 4 4 4 0 Snapin/Pallidin DUF4446 PF14584.6 gi|433591553|ref|YP_007281049.1| - 0.7 9.9 4.7 10 6.1 0.1 3.4 2 1 2 4 4 3 0 Protein of unknown function (DUF4446) Cast PF10174.9 gi|433591553|ref|YP_007281049.1| - 0.75 7.9 14.7 1.1 7.3 14.7 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone BAR_3 PF16746.5 gi|433591553|ref|YP_007281049.1| - 1.2 8.8 2.7 40 3.8 0.2 2.8 2 1 1 3 3 3 0 BAR domain of APPL family YscO-like PF16789.5 gi|433591553|ref|YP_007281049.1| - 1.4 8.9 4.8 2.7 8.0 4.0 1.9 1 1 0 1 1 1 0 YscO-like protein DUF677 PF05055.12 gi|433591553|ref|YP_007281049.1| - 1.4 7.7 13.0 3.1 6.6 6.9 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF677) DUF4559 PF15112.6 gi|433591553|ref|YP_007281049.1| - 1.5 8.5 8.6 3 7.5 8.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) MAD PF05557.13 gi|433591553|ref|YP_007281049.1| - 1.6 7.0 6.6 2.1 6.6 4.9 1.7 1 1 0 1 1 1 0 Mitotic checkpoint protein DUF4988 PF16378.5 gi|433591553|ref|YP_007281049.1| - 1.7 8.3 13.1 1.5 8.4 2.2 4.1 1 1 3 4 4 4 0 Domain of unknown function Syntaxin-6_N PF09177.11 gi|433591553|ref|YP_007281049.1| - 1.7 9.2 14.2 11 6.7 4.6 3.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Seryl_tRNA_N PF02403.22 gi|433591553|ref|YP_007281049.1| - 1.8 8.8 17.8 7.8 6.8 0.4 4.5 2 1 1 4 4 3 0 Seryl-tRNA synthetase N-terminal domain MIP-T3_C PF17749.1 gi|433591553|ref|YP_007281049.1| - 1.9 8.5 11.3 10 6.1 0.7 4.3 1 1 2 4 4 4 0 Microtubule-binding protein MIP-T3 C-terminal region AIP3 PF03915.13 gi|433591553|ref|YP_007281049.1| - 2.3 7.2 19.6 14 4.7 19.5 2.2 1 1 0 1 1 1 0 Actin interacting protein 3 Clp_N PF02861.20 gi|433591553|ref|YP_007281049.1| - 2.7 8.2 7.8 0.18 11.9 0.3 2.9 3 0 0 3 3 2 0 Clp amino terminal domain, pathogenicity island component SlyX PF04102.12 gi|433591553|ref|YP_007281049.1| - 2.8 8.6 13.3 3.4 8.4 2.5 4.0 1 1 3 4 4 4 0 SlyX CC2-LZ PF16516.5 gi|433591553|ref|YP_007281049.1| - 3.5 8.1 9.0 3.5 8.0 0.8 3.2 1 1 2 3 3 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator DHR10 PF18595.1 gi|433591553|ref|YP_007281049.1| - 4.3 7.4 16.0 1.2 9.2 3.3 3.5 2 1 2 4 4 3 0 Designed helical repeat protein 10 domain HlyD_2 PF12700.7 gi|433591553|ref|YP_007281049.1| - 5.3 5.7 6.4 8 5.1 2.3 2.1 1 1 1 2 2 2 0 HlyD family secretion protein Sipho_Gp157 PF05565.11 gi|433591553|ref|YP_007281049.1| - 5.4 7.0 10.6 4.7 7.2 0.3 2.8 1 1 0 2 2 2 0 Siphovirus Gp157 Tropomyosin_1 PF12718.7 gi|433591553|ref|YP_007281049.1| - 5.9 7.0 36.0 0.031 14.4 6.1 4.4 3 1 2 5 5 3 0 Tropomyosin like Lactamase_B_2 PF12706.7 gi|433591554|ref|YP_007281050.1| - 2.2e-18 66.5 2.3 2.8e-18 66.1 2.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|433591554|ref|YP_007281050.1| - 2e-10 40.8 0.1 2.5e-10 40.5 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|433591554|ref|YP_007281050.1| - 0.032 14.3 11.3 0.18 11.8 11.2 2.0 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily HTH_20 PF12840.7 gi|433591555|ref|YP_007281051.1| - 0.00039 20.4 3.9 0.00039 20.4 3.9 3.4 2 2 0 2 2 2 1 Helix-turn-helix domain TilS PF09179.11 gi|433591555|ref|YP_007281051.1| - 1.8 9.1 7.1 3.6 8.1 0.7 3.0 2 1 0 2 2 2 0 TilS substrate binding domain Diphthamide_syn PF01866.17 gi|433591556|ref|YP_007281052.1| - 1.7e-77 260.8 0.0 2.2e-77 260.5 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein GTP-bdg_N PF13167.6 gi|433591556|ref|YP_007281052.1| - 0.022 15.4 0.0 0.45 11.2 0.0 2.4 1 1 0 2 2 2 0 GTP-binding GTPase N-terminal HalX PF08663.10 gi|433591557|ref|YP_007281053.1| - 0.003 17.8 2.4 0.019 15.3 2.4 2.3 1 1 0 1 1 1 1 HalX domain DUF3188 PF11384.8 gi|433591558|ref|YP_007281054.1| - 0.086 12.6 3.5 6.9 6.5 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) DUF1282 PF06930.12 gi|433591558|ref|YP_007281054.1| - 0.18 11.6 9.6 0.53 10.0 1.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1282) Gpr1_Fun34_YaaH PF01184.19 gi|433591558|ref|YP_007281054.1| - 0.74 9.4 8.3 2 7.9 7.8 1.8 1 1 1 2 2 2 0 GPR1/FUN34/yaaH family MreB_Mbl PF06723.13 gi|433591559|ref|YP_007281055.1| - 3.4e-05 22.8 0.0 0.018 13.8 0.0 2.4 2 1 0 2 2 2 2 MreB/Mbl protein Actin PF00022.19 gi|433591559|ref|YP_007281055.1| - 0.00046 18.9 0.0 0.28 9.7 0.0 2.2 2 0 0 2 2 2 2 Actin FtsA PF14450.6 gi|433591559|ref|YP_007281055.1| - 0.019 15.3 0.0 0.083 13.3 0.0 1.9 2 0 0 2 2 2 0 Cell division protein FtsA zf-FPG_IleRS PF06827.14 gi|433591560|ref|YP_007281056.1| - 1.7e-07 31.0 1.0 2.6e-07 30.4 1.0 1.2 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.10 gi|433591560|ref|YP_007281056.1| - 0.00031 20.8 2.0 0.00069 19.7 2.0 1.6 1 1 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|433591560|ref|YP_007281056.1| - 0.00069 18.9 1.5 0.15 11.5 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-TFIIB PF13453.6 gi|433591560|ref|YP_007281056.1| - 0.00085 18.6 1.6 0.0013 18.1 1.6 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger UPF0547 PF10571.9 gi|433591560|ref|YP_007281056.1| - 0.0014 18.7 3.0 0.023 14.7 0.3 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|433591560|ref|YP_007281056.1| - 0.0029 17.5 0.3 0.0038 17.1 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|433591560|ref|YP_007281056.1| - 0.009 15.6 0.4 3.2 7.4 0.0 2.3 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|433591560|ref|YP_007281056.1| - 0.0098 15.9 4.3 0.14 12.2 0.2 2.2 1 1 1 2 2 2 1 Transposase zinc-ribbon domain IBR PF01485.21 gi|433591560|ref|YP_007281056.1| - 0.016 15.5 0.3 0.021 15.1 0.3 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zf-C4_Topoisom PF01396.19 gi|433591560|ref|YP_007281056.1| - 0.017 14.9 1.7 3.4 7.5 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 gi|433591560|ref|YP_007281056.1| - 0.035 14.1 0.6 0.053 13.6 0.6 1.3 1 1 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|433591560|ref|YP_007281056.1| - 0.037 13.9 2.1 3.7 7.5 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_ligase_ZBD PF03119.16 gi|433591560|ref|YP_007281056.1| - 0.038 14.0 3.9 0.66 10.1 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.6 gi|433591560|ref|YP_007281056.1| - 0.044 13.5 4.6 0.54 10.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.6 gi|433591560|ref|YP_007281056.1| - 0.046 13.7 1.9 1.2 9.2 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein zf-IS66 PF13005.7 gi|433591560|ref|YP_007281056.1| - 0.049 14.0 4.4 1.8 9.0 0.2 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-NADH-PPase PF09297.11 gi|433591560|ref|YP_007281056.1| - 0.055 13.1 2.0 1.3 8.8 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|433591560|ref|YP_007281056.1| - 0.062 13.6 5.9 0.51 10.6 0.6 2.3 1 1 1 2 2 2 0 zinc-ribbon Prok-RING_1 PF14446.6 gi|433591560|ref|YP_007281056.1| - 0.067 13.1 1.2 0.11 12.5 1.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 CpXC PF14353.6 gi|433591560|ref|YP_007281056.1| - 0.072 13.1 1.9 0.16 12.0 0.0 1.9 1 1 1 2 2 2 0 CpXC protein DNA_RNApol_7kD PF03604.13 gi|433591560|ref|YP_007281056.1| - 0.073 12.8 0.8 0.14 11.9 0.8 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Cys_rich_CPXG PF14255.6 gi|433591560|ref|YP_007281056.1| - 0.084 12.8 1.0 3.3 7.7 0.2 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG HypA PF01155.19 gi|433591560|ref|YP_007281056.1| - 0.087 12.9 0.2 0.12 12.4 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|433591560|ref|YP_007281056.1| - 0.1 12.6 2.5 0.5 10.3 2.0 2.1 1 1 1 2 2 2 0 Nudix N-terminal RNHCP PF12647.7 gi|433591560|ref|YP_007281056.1| - 0.11 12.5 0.2 0.12 12.4 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain Anti-TRAP PF15777.5 gi|433591560|ref|YP_007281056.1| - 0.12 12.4 1.1 0.19 11.7 1.1 1.3 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Lar_restr_allev PF14354.6 gi|433591560|ref|YP_007281056.1| - 0.14 12.5 6.1 1.1 9.7 6.1 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar NMD3 PF04981.13 gi|433591560|ref|YP_007281056.1| - 0.25 10.8 0.3 0.28 10.6 0.3 1.0 1 0 0 1 1 1 0 NMD3 family zinc_ribbon_4 PF13717.6 gi|433591560|ref|YP_007281056.1| - 0.31 11.0 3.7 4.2 7.4 3.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|433591560|ref|YP_007281056.1| - 0.45 10.7 0.1 0.45 10.7 0.1 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn_Tnp_IS1 PF03811.13 gi|433591560|ref|YP_007281056.1| - 0.46 10.3 4.2 3.1 7.6 0.5 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-C2HC_2 PF13913.6 gi|433591560|ref|YP_007281056.1| - 0.67 9.9 0.5 0.67 9.9 0.5 2.5 3 0 0 3 3 3 0 zinc-finger of a C2HC-type zf_Rg PF17915.1 gi|433591560|ref|YP_007281056.1| - 1.1 8.7 5.7 0.4 10.1 0.4 2.1 1 1 1 2 2 2 0 Reverse gyrase zinc finger zf-ISL3 PF14690.6 gi|433591560|ref|YP_007281056.1| - 1.3 9.8 6.6 1.6 9.4 1.0 2.3 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ACC PF17848.1 gi|433591560|ref|YP_007281056.1| - 2.4 8.3 4.8 20 5.4 0.3 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Mu-like_Com PF10122.9 gi|433591560|ref|YP_007281056.1| - 2.6 7.5 6.6 8.2 6.0 0.2 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com Ogr_Delta PF04606.12 gi|433591560|ref|YP_007281056.1| - 2.9 7.9 5.4 9.7 6.3 0.9 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger AP_endonuc_2 PF01261.24 gi|433591561|ref|YP_007281057.1| - 0.0038 16.7 0.1 0.0045 16.4 0.1 1.0 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PrmA PF06325.13 gi|433591562|ref|YP_007281058.1| - 1.2e-11 44.6 0.4 1.9e-11 43.9 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|433591562|ref|YP_007281058.1| - 6.4e-11 42.1 0.0 1.1e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|433591562|ref|YP_007281058.1| - 2.7e-07 31.2 0.0 5.5e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433591562|ref|YP_007281058.1| - 4e-06 26.7 0.1 7.4e-06 25.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433591562|ref|YP_007281058.1| - 2.3e-05 24.9 0.0 4.4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|433591562|ref|YP_007281058.1| - 0.00016 21.4 0.2 0.0011 18.7 0.2 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|433591562|ref|YP_007281058.1| - 0.00016 21.5 0.0 0.00018 21.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|433591562|ref|YP_007281058.1| - 0.0085 15.7 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|433591562|ref|YP_007281058.1| - 0.013 15.3 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein N6_Mtase PF02384.16 gi|433591562|ref|YP_007281058.1| - 0.022 14.0 0.0 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase CbiA PF01656.23 gi|433591562|ref|YP_007281058.1| - 0.04 14.0 0.0 0.06 13.4 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Methyltransf_32 PF13679.6 gi|433591562|ref|YP_007281058.1| - 0.041 13.9 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.17 gi|433591562|ref|YP_007281058.1| - 0.072 12.2 0.0 0.099 11.8 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_12 PF08242.12 gi|433591562|ref|YP_007281058.1| - 0.12 13.1 0.1 0.23 12.2 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.26 gi|433591562|ref|YP_007281058.1| - 0.14 12.1 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase PCMT PF01135.19 gi|433591562|ref|YP_007281058.1| - 0.17 11.6 0.0 0.23 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Rhomboid PF01694.22 gi|433591563|ref|YP_007281059.1| - 1.1e-07 31.9 13.1 1.1e-07 31.9 13.1 3.2 2 1 0 2 2 2 1 Rhomboid family Phytase-like PF13449.6 gi|433591563|ref|YP_007281059.1| - 0.0079 16.2 0.2 0.016 15.2 0.2 1.4 1 0 0 1 1 1 1 Esterase-like activity of phytase RNA_pol_L_2 PF13656.6 gi|433591564|ref|YP_007281060.1| - 7.9e-17 60.8 0.0 9.3e-17 60.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|433591564|ref|YP_007281060.1| - 3.5e-06 26.3 0.0 6.6e-06 25.5 0.0 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain zinc_ribbon_2 PF13240.6 gi|433591565|ref|YP_007281061.1| - 1.2e-07 31.2 19.1 0.00083 19.0 4.3 2.4 2 0 0 2 2 2 2 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|433591565|ref|YP_007281061.1| - 1.5e-05 25.1 1.7 0.042 14.0 0.1 2.5 2 0 0 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.10 gi|433591565|ref|YP_007281061.1| - 0.0025 17.9 10.8 0.12 12.5 1.5 2.8 2 0 0 2 2 2 2 Zinc ribbon domain HalOD2 PF18547.1 gi|433591565|ref|YP_007281061.1| - 0.014 15.3 13.8 0.16 11.9 0.5 3.4 2 2 1 3 3 3 0 Halobacterial output domain 2 DZR PF12773.7 gi|433591565|ref|YP_007281061.1| - 0.062 13.3 12.5 0.48 10.5 12.6 2.1 1 1 1 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|433591565|ref|YP_007281061.1| - 0.066 13.2 7.2 1 9.4 0.6 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NCD3G PF07562.14 gi|433591565|ref|YP_007281061.1| - 0.12 12.4 9.0 0.45 10.5 0.5 2.3 2 0 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR Cytochrom_c3_2 PF14537.6 gi|433591565|ref|YP_007281061.1| - 0.17 12.4 7.1 2.2 8.8 0.1 2.3 2 0 0 2 2 2 0 Cytochrome c3 Zn_ribbon_SprT PF17283.2 gi|433591565|ref|YP_007281061.1| - 0.24 11.3 11.6 0.33 10.9 0.4 2.7 3 0 0 3 3 3 0 SprT-like zinc ribbon domain ARL6IP6 PF15062.6 gi|433591565|ref|YP_007281061.1| - 0.25 11.5 1.8 0.44 10.7 1.8 1.3 1 0 0 1 1 1 0 Haemopoietic lineage transmembrane helix zinc-ribbon_6 PF10005.9 gi|433591565|ref|YP_007281061.1| - 0.36 11.5 2.5 13 6.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1451 PF07295.11 gi|433591565|ref|YP_007281061.1| - 0.84 9.7 9.3 5.8 6.9 0.6 2.2 2 0 0 2 2 2 0 Zinc-ribbon containing domain DUF3716 PF12511.8 gi|433591565|ref|YP_007281061.1| - 4.1 7.5 7.5 16 5.7 4.6 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3716) His_biosynth PF00977.21 gi|433591566|ref|YP_007281062.1| - 7.6e-80 267.7 0.1 8.6e-80 267.5 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|433591566|ref|YP_007281062.1| - 8.4e-09 34.9 0.0 4.3e-06 26.0 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|433591566|ref|YP_007281062.1| - 1.8e-07 30.9 0.7 0.00018 21.0 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|433591566|ref|YP_007281062.1| - 7.4e-06 25.5 0.1 0.0046 16.3 0.0 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|433591566|ref|YP_007281062.1| - 9.6e-05 21.9 0.1 0.00021 20.7 0.1 1.5 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|433591566|ref|YP_007281062.1| - 0.0012 18.1 0.2 0.0039 16.4 0.0 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|433591566|ref|YP_007281062.1| - 0.0058 16.0 0.2 0.16 11.3 0.0 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase PcrB PF01884.17 gi|433591566|ref|YP_007281062.1| - 0.022 14.2 0.1 0.035 13.6 0.1 1.2 1 0 0 1 1 1 0 PcrB family Glu_synthase PF01645.17 gi|433591566|ref|YP_007281062.1| - 0.024 13.8 0.0 0.036 13.2 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|433591566|ref|YP_007281062.1| - 0.026 13.6 0.1 0.05 12.6 0.1 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|433591566|ref|YP_007281062.1| - 0.038 13.0 0.4 0.058 12.4 0.0 1.4 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain PEP_mutase PF13714.6 gi|433591566|ref|YP_007281062.1| - 0.11 11.9 0.5 0.36 10.2 0.0 2.2 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase DUF3561 PF12084.8 gi|433591567|ref|YP_007281063.1| - 0.078 13.0 0.1 0.086 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) RHH_1 PF01402.21 gi|433591568|ref|YP_007281064.1| - 0.0033 17.3 0.1 0.0043 16.9 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IclR PF01614.18 gi|433591568|ref|YP_007281064.1| - 0.018 14.9 0.0 0.023 14.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator InaF-motif PF15018.6 gi|433591569|ref|YP_007281065.1| - 2.8 7.9 5.6 5.3 7.0 5.6 1.3 1 0 0 1 1 1 0 TRP-interacting helix Oxidored_molyb PF00174.19 gi|433591570|ref|YP_007281066.1| - 6.4e-39 133.3 0.0 7.9e-39 133.0 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain TetR_N PF00440.23 gi|433591570|ref|YP_007281066.1| - 0.033 14.0 0.0 0.096 12.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Chorismate_bind PF00425.18 gi|433591571|ref|YP_007281067.1| - 3.8e-75 252.8 0.0 4.8e-75 252.4 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme T3SS_ExsE PF18286.1 gi|433591571|ref|YP_007281067.1| - 0.21 11.6 1.8 19 5.3 0.3 2.9 2 0 0 2 2 2 0 Type III secretion system ExsE TPP_enzyme_N PF02776.18 gi|433591572|ref|YP_007281068.1| - 7.4e-37 126.6 0.0 1.8e-36 125.4 0.0 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|433591572|ref|YP_007281068.1| - 3.5e-06 26.9 0.0 7.4e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M_2 PF16582.5 gi|433591572|ref|YP_007281068.1| - 0.0065 16.2 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Middle domain of thiamine pyrophosphate TPP_enzyme_M PF00205.22 gi|433591572|ref|YP_007281068.1| - 0.0068 16.1 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DnaJ PF00226.31 gi|433591573|ref|YP_007281069.1| - 8.5e-20 70.7 0.4 1.3e-19 70.1 0.4 1.3 1 0 0 1 1 1 1 DnaJ domain ExoD PF06055.12 gi|433591574|ref|YP_007281070.1| - 0.019 14.4 4.4 0.063 12.7 0.6 2.7 2 1 0 2 2 2 0 Exopolysaccharide synthesis, ExoD DUF726 PF05277.12 gi|433591574|ref|YP_007281070.1| - 4.9 6.0 7.6 18 4.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF726) TrmB PF01978.19 gi|433591575|ref|YP_007281071.1| - 1.5e-17 63.2 0.2 3.1e-17 62.2 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|433591575|ref|YP_007281071.1| - 0.00017 21.3 0.1 0.00056 19.6 0.1 2.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433591575|ref|YP_007281071.1| - 0.00097 19.0 0.1 0.0033 17.3 0.1 2.0 2 0 0 2 2 2 1 MarR family Regulator_TrmB PF11495.8 gi|433591575|ref|YP_007281071.1| - 0.035 13.3 0.0 0.046 12.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB Toprim_3 PF13362.6 gi|433591575|ref|YP_007281071.1| - 0.052 13.9 0.4 0.42 11.0 0.4 2.4 1 1 0 1 1 1 0 Toprim domain PIN_9 PF18477.1 gi|433591575|ref|YP_007281071.1| - 0.096 13.0 0.3 0.58 10.5 0.1 2.1 1 1 1 2 2 2 0 PIN like domain DUF2250 PF10007.9 gi|433591575|ref|YP_007281071.1| - 0.17 12.0 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MMPL PF03176.15 gi|433591576|ref|YP_007281072.1| - 5.4e-39 134.1 53.5 2.7e-19 69.3 29.6 3.5 2 2 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|433591576|ref|YP_007281072.1| - 1.6e-13 50.7 7.1 1.5e-07 31.4 1.6 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|433591576|ref|YP_007281072.1| - 1.1e-11 43.6 19.0 3.3e-06 25.5 6.5 2.5 3 0 0 3 3 3 2 Patched family SecD_SecF PF02355.16 gi|433591576|ref|YP_007281072.1| - 1.5e-05 24.5 21.0 0.0005 19.5 7.4 2.3 2 0 0 2 2 2 2 Protein export membrane protein CLLAC PF15675.5 gi|433591576|ref|YP_007281072.1| - 2.7 7.6 6.9 0.72 9.5 1.9 2.7 2 0 0 2 2 2 0 CLLAC-motif containing domain ECH_1 PF00378.20 gi|433591577|ref|YP_007281073.1| - 3.1e-56 190.5 0.0 3.9e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|433591577|ref|YP_007281073.1| - 9.4e-14 51.6 0.0 2.2e-13 50.4 0.0 1.5 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase Iron_transport PF10634.9 gi|433591578|ref|YP_007281074.1| - 0.00011 22.4 0.0 0.02 15.1 0.0 2.2 2 0 0 2 2 2 2 Fe2+ transport protein UbiA PF01040.18 gi|433591579|ref|YP_007281075.1| - 2.7e-44 151.4 17.0 3.3e-44 151.1 17.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family MR_MLE_C PF13378.6 gi|433591580|ref|YP_007281076.1| - 7e-41 140.2 4.5 1.3e-40 139.3 4.5 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|433591580|ref|YP_007281076.1| - 0.032 14.4 0.1 0.23 11.7 0.1 2.4 1 1 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMP-binding PF00501.28 gi|433591581|ref|YP_007281077.1| - 1.1e-81 274.6 0.1 1.3e-81 274.4 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433591581|ref|YP_007281077.1| - 9.5e-18 65.0 1.7 1.1e-17 64.7 0.2 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain BCCT PF02028.17 gi|433591582|ref|YP_007281078.1| - 4.9e-118 394.6 43.1 5.6e-118 394.4 43.1 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter TANGO2 PF05742.12 gi|433591583|ref|YP_007281079.1| - 7.2e-22 78.7 0.0 1.2e-21 78.0 0.0 1.4 1 1 0 1 1 1 1 Transport and Golgi organisation 2 MarR PF01047.22 gi|433591584|ref|YP_007281080.1| - 0.00013 21.9 0.0 0.00017 21.5 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|433591584|ref|YP_007281080.1| - 0.0011 18.8 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|433591584|ref|YP_007281080.1| - 0.0046 17.4 0.0 0.006 17.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|433591584|ref|YP_007281080.1| - 0.013 15.6 0.0 0.019 15.1 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|433591584|ref|YP_007281080.1| - 0.019 14.9 0.1 0.026 14.4 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Amidase PF01425.21 gi|433591586|ref|YP_007281082.1| - 4.6e-147 490.6 0.1 5.6e-147 490.3 0.1 1.0 1 0 0 1 1 1 1 Amidase Smoothelin PF12510.8 gi|433591586|ref|YP_007281082.1| - 0.074 13.1 0.5 17 5.5 0.3 2.5 2 0 0 2 2 2 0 Smoothelin cytoskeleton protein Glu-tRNAGln PF02686.15 gi|433591587|ref|YP_007281083.1| - 5.5e-16 58.6 2.9 5.7e-16 58.6 2.1 1.4 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit Ferritin PF00210.24 gi|433591587|ref|YP_007281083.1| - 0.14 12.1 0.2 0.2 11.6 0.1 1.3 1 1 0 1 1 1 0 Ferritin-like domain TFIIB PF00382.19 gi|433591588|ref|YP_007281084.1| - 3.7e-39 132.6 0.2 4.8e-19 68.2 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433591588|ref|YP_007281084.1| - 2.7e-14 52.4 3.7 5.5e-14 51.4 3.7 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|433591588|ref|YP_007281084.1| - 0.022 14.9 1.6 0.04 14.1 1.6 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cyclin_C PF02984.19 gi|433591588|ref|YP_007281084.1| - 0.041 14.0 0.0 0.97 9.5 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain DNA_ligase_ZBD PF03119.16 gi|433591588|ref|YP_007281084.1| - 0.081 13.0 6.4 0.057 13.5 4.0 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|433591588|ref|YP_007281084.1| - 0.081 13.0 0.8 0.14 12.2 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C4_Topoisom PF01396.19 gi|433591588|ref|YP_007281084.1| - 0.12 12.2 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger RNA_POL_M_15KD PF02150.16 gi|433591588|ref|YP_007281084.1| - 0.17 11.8 0.3 0.3 11.0 0.3 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|433591588|ref|YP_007281084.1| - 0.26 11.2 1.3 0.69 9.9 1.3 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|433591588|ref|YP_007281084.1| - 0.64 10.0 3.4 1.8 8.6 3.4 1.8 1 1 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|433591588|ref|YP_007281084.1| - 1.5 8.3 3.8 0.53 9.8 0.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433591588|ref|YP_007281084.1| - 2.5 8.3 5.4 1.3 9.3 0.9 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-FCS PF06467.14 gi|433591589|ref|YP_007281085.1| - 0.0061 16.5 0.7 0.013 15.4 0.7 1.5 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif VATC PF18716.1 gi|433591589|ref|YP_007281085.1| - 0.042 13.7 0.2 0.37 10.7 0.1 1.9 2 0 0 2 2 2 0 Vms1-associating treble clef domain Cu-oxidase_3 PF07732.15 gi|433591590|ref|YP_007281086.1| - 3.5e-09 36.7 0.0 2.5e-08 33.9 0.0 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|433591590|ref|YP_007281086.1| - 1.7e-07 31.0 0.1 2.6e-06 27.2 0.0 2.7 2 1 0 2 2 2 1 Multicopper oxidase Copper-bind PF00127.20 gi|433591590|ref|YP_007281086.1| - 0.073 13.5 0.0 0.21 12.0 0.0 1.8 2 0 0 2 2 2 0 Copper binding proteins, plastocyanin/azurin family Abhydrolase_1 PF00561.20 gi|433591591|ref|YP_007281087.1| - 4.1e-25 88.9 0.0 1.8e-24 86.8 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433591591|ref|YP_007281087.1| - 1.8e-22 81.1 15.4 2.2e-22 80.8 15.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433591591|ref|YP_007281087.1| - 1.7e-11 43.9 0.0 5.3e-11 42.2 0.0 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|433591591|ref|YP_007281087.1| - 0.0061 16.1 0.1 5.2 6.5 0.0 2.8 2 1 0 2 2 2 2 Prolyl oligopeptidase family AXE1 PF05448.12 gi|433591591|ref|YP_007281087.1| - 0.018 13.8 0.0 0.52 8.9 0.0 2.1 1 1 1 2 2 2 0 Acetyl xylan esterase (AXE1) DLH PF01738.18 gi|433591591|ref|YP_007281087.1| - 0.019 14.5 0.0 0.2 11.2 0.0 2.3 2 1 0 2 2 2 0 Dienelactone hydrolase family Esterase PF00756.20 gi|433591591|ref|YP_007281087.1| - 0.027 14.1 0.0 0.058 13.0 0.0 1.6 1 1 0 1 1 1 0 Putative esterase Peptidase_S15 PF02129.18 gi|433591591|ref|YP_007281087.1| - 0.057 13.0 0.2 0.073 12.6 0.2 1.4 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) PGAP1 PF07819.13 gi|433591591|ref|YP_007281087.1| - 0.062 13.0 0.0 0.087 12.5 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein DUF3054 PF11255.8 gi|433591592|ref|YP_007281088.1| - 1.8e-19 70.3 10.8 2.3e-19 69.9 10.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) CPP1-like PF11833.8 gi|433591592|ref|YP_007281088.1| - 0.21 11.2 3.7 0.25 11.0 3.7 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like CoA_binding_3 PF13727.6 gi|433591592|ref|YP_007281088.1| - 1.2 9.2 5.4 0.082 12.9 0.7 1.5 2 0 0 2 2 2 0 CoA-binding domain TrbC PF04956.13 gi|433591592|ref|YP_007281088.1| - 2 8.7 12.2 1 9.6 0.7 2.4 3 0 0 3 3 3 0 TrbC/VIRB2 family E1-E2_ATPase PF00122.20 gi|433591593|ref|YP_007281089.1| - 1.9e-44 151.3 1.5 4.9e-44 150.0 1.5 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433591593|ref|YP_007281089.1| - 5.5e-31 108.5 7.1 5.5e-31 108.5 7.1 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|433591593|ref|YP_007281089.1| - 2e-07 31.3 0.0 6.3e-07 29.7 0.0 1.9 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|433591593|ref|YP_007281089.1| - 0.00043 20.1 0.3 0.00065 19.5 0.3 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|433591593|ref|YP_007281089.1| - 0.0021 18.8 0.6 0.0054 17.5 0.1 2.0 2 1 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase Ycf66_N PF07444.11 gi|433591593|ref|YP_007281089.1| - 0.12 12.5 1.7 0.44 10.7 0.3 2.6 2 0 0 2 2 2 0 Ycf66 protein N-terminus DUF5325 PF17259.2 gi|433591593|ref|YP_007281089.1| - 0.16 11.9 0.1 0.57 10.1 0.1 2.0 1 0 0 1 1 1 0 Family of unknown function (DUF5325) Gly-zipper_OmpA PF13436.6 gi|433591594|ref|YP_007281090.1| - 0.059 13.2 1.4 0.18 11.6 1.4 1.8 1 0 0 1 1 1 0 Glycine-zipper domain Big_7 PF17957.1 gi|433591595|ref|YP_007281091.1| - 0.0061 17.3 0.0 0.013 16.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial Ig domain COX2 PF00116.20 gi|433591596|ref|YP_007281092.1| - 1.4e-05 24.9 0.0 2e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain DsbD PF02683.15 gi|433591598|ref|YP_007281094.1| - 2.3e-08 34.2 15.3 3.8e-08 33.5 15.3 1.3 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Redoxin PF08534.10 gi|433591599|ref|YP_007281095.1| - 1.8e-11 43.9 0.0 2.1e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|433591599|ref|YP_007281095.1| - 1.6e-06 28.0 0.0 2e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.20 gi|433591599|ref|YP_007281095.1| - 0.0032 17.4 0.0 0.012 15.6 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|433591599|ref|YP_007281095.1| - 0.0091 16.4 0.0 0.011 16.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|433591599|ref|YP_007281095.1| - 0.024 15.0 0.0 0.061 13.7 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin-like zf_PR_Knuckle PF18445.1 gi|433591599|ref|YP_007281095.1| - 0.038 13.8 0.5 2.7 7.9 0.4 2.3 1 1 1 2 2 2 0 PR zinc knuckle motif Histone_HNS PF00816.21 gi|433591599|ref|YP_007281095.1| - 0.13 13.1 0.0 0.21 12.5 0.0 1.4 1 0 0 1 1 1 0 H-NS histone family SCO1-SenC PF02630.14 gi|433591600|ref|YP_007281096.1| - 7.9e-16 58.2 2.6 6.8e-15 55.2 2.6 2.0 1 1 0 1 1 1 1 SCO1/SenC TAT_signal PF10518.9 gi|433591600|ref|YP_007281096.1| - 0.00098 18.9 1.0 0.002 17.9 1.0 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Redoxin PF08534.10 gi|433591600|ref|YP_007281096.1| - 0.047 13.4 0.1 0.5 10.1 0.0 2.2 2 0 0 2 2 2 0 Redoxin AhpC-TSA PF00578.21 gi|433591600|ref|YP_007281096.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA family Copper-bind PF00127.20 gi|433591601|ref|YP_007281097.1| - 4.8e-05 23.7 0.0 6.5e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|433591601|ref|YP_007281097.1| - 0.097 12.6 0.9 0.16 11.9 0.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UbiA PF01040.18 gi|433591602|ref|YP_007281098.1| - 4.4e-50 170.3 26.2 4.4e-50 170.3 26.2 2.9 2 1 0 2 2 2 1 UbiA prenyltransferase family DUF998 PF06197.13 gi|433591602|ref|YP_007281098.1| - 0.00015 21.5 10.3 0.00015 21.5 10.3 5.0 3 1 1 4 4 4 1 Protein of unknown function (DUF998) COX15-CtaA PF02628.15 gi|433591602|ref|YP_007281098.1| - 0.0053 15.9 1.0 0.0053 15.9 1.0 3.4 3 1 0 3 3 3 1 Cytochrome oxidase assembly protein DUF2249 PF10006.9 gi|433591603|ref|YP_007281099.1| - 4.7e-15 55.2 0.5 6.2e-15 54.8 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|433591603|ref|YP_007281099.1| - 0.0047 16.7 0.0 0.0074 16.1 0.0 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA MAP1B_neuraxin PF00414.17 gi|433591603|ref|YP_007281099.1| - 0.014 14.9 0.7 0.038 13.5 0.7 1.8 1 0 0 1 1 1 0 Neuraxin and MAP1B repeat DUF2249 PF10006.9 gi|433591604|ref|YP_007281100.1| - 3.5e-25 87.7 1.0 3.8e-25 87.5 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF4926 PF16277.5 gi|433591604|ref|YP_007281100.1| - 0.038 13.3 0.2 0.16 11.4 0.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4926) DUF2249 PF10006.9 gi|433591605|ref|YP_007281101.1| - 2.4e-20 72.2 1.3 2.7e-20 72.0 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|433591605|ref|YP_007281101.1| - 0.074 12.9 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Sulfurtransferase TusA HTH_10 PF04967.12 gi|433591606|ref|YP_007281102.1| - 1.2e-18 66.6 0.1 3.7e-18 65.1 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain PilN PF05137.13 gi|433591606|ref|YP_007281102.1| - 0.0012 19.0 0.0 0.031 14.4 0.0 2.3 2 0 0 2 2 2 1 Fimbrial assembly protein (PilN) MarR_2 PF12802.7 gi|433591606|ref|YP_007281102.1| - 0.0057 16.5 0.0 0.018 14.9 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|433591606|ref|YP_007281102.1| - 0.012 15.4 0.5 0.17 11.7 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain PuR_N PF09182.10 gi|433591606|ref|YP_007281102.1| - 0.016 15.1 0.0 0.034 14.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal Phage_CI_repr PF07022.13 gi|433591606|ref|YP_007281102.1| - 0.021 14.9 0.0 0.047 13.8 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 gi|433591606|ref|YP_007281102.1| - 0.022 14.3 0.3 0.047 13.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_Tnp_Tc3_2 PF01498.18 gi|433591606|ref|YP_007281102.1| - 0.028 14.7 0.1 4.9 7.5 0.1 3.0 4 0 0 4 4 4 0 Transposase NYD-SP28 PF14772.6 gi|433591606|ref|YP_007281102.1| - 0.029 14.4 0.1 0.092 12.8 0.0 1.8 1 1 1 2 2 2 0 Sperm tail HTH_Tnp_1_2 PF13022.6 gi|433591606|ref|YP_007281102.1| - 0.052 13.7 0.0 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase Fe_dep_repress PF01325.19 gi|433591606|ref|YP_007281102.1| - 0.086 13.1 0.0 0.3 11.3 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Ferredoxin_N PF16947.5 gi|433591607|ref|YP_007281103.1| - 2.4e-36 123.6 7.7 7.8e-36 122.0 7.7 2.0 1 0 0 1 1 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Fer4_7 PF12838.7 gi|433591607|ref|YP_007281103.1| - 1.1e-15 58.0 20.7 6.3e-06 26.7 1.2 4.2 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433591607|ref|YP_007281103.1| - 5.3e-13 48.9 17.0 2e-08 34.2 0.5 3.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|433591607|ref|YP_007281103.1| - 7.8e-12 45.2 5.9 7.8e-12 45.2 5.9 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433591607|ref|YP_007281103.1| - 7e-09 35.7 22.4 3e-05 24.1 5.3 3.3 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|433591607|ref|YP_007281103.1| - 2.4e-08 33.7 31.0 0.001 19.0 2.9 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.27 gi|433591607|ref|YP_007281103.1| - 3.2e-08 33.0 32.9 0.00012 21.7 3.5 5.1 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|433591607|ref|YP_007281103.1| - 6.6e-06 25.9 10.3 0.00037 20.4 2.2 4.8 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|433591607|ref|YP_007281103.1| - 0.00021 21.7 21.8 0.031 14.7 5.2 3.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|433591607|ref|YP_007281103.1| - 0.0029 18.4 39.8 0.74 10.9 5.1 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|433591607|ref|YP_007281103.1| - 0.006 17.5 24.7 1.8 9.6 0.1 4.7 3 1 2 5 5 5 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|433591607|ref|YP_007281103.1| - 0.014 16.1 15.7 0.17 12.6 0.5 4.3 4 1 0 4 4 4 0 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|433591607|ref|YP_007281103.1| - 0.037 14.2 22.9 0.5 10.5 9.4 3.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|433591607|ref|YP_007281103.1| - 0.052 14.1 25.9 4.2 8.0 8.7 4.5 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|433591607|ref|YP_007281103.1| - 1.6 9.5 34.2 0.12 12.9 3.0 4.5 4 1 0 4 4 4 0 4Fe-4S binding domain NrfD PF03916.14 gi|433591608|ref|YP_007281104.1| - 2.4e-21 76.7 22.2 5.4e-21 75.5 22.2 1.5 1 0 0 1 1 1 1 Polysulphide reductase, NrfD DUF996 PF06195.13 gi|433591609|ref|YP_007281105.1| - 0.09 13.1 3.7 0.11 12.8 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF996) DUF2062 PF09835.9 gi|433591609|ref|YP_007281105.1| - 0.43 10.4 6.2 0.59 10.0 6.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2062) ParA PF10609.9 gi|433591610|ref|YP_007281106.1| - 1.2e-90 303.2 0.2 1.6e-90 302.9 0.2 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|433591610|ref|YP_007281106.1| - 2.1e-12 47.2 0.0 4.8e-12 46.0 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|433591610|ref|YP_007281106.1| - 3.5e-11 43.4 0.6 2.1e-09 37.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain FeS_assembly_P PF01883.19 gi|433591610|ref|YP_007281106.1| - 8.6e-09 35.4 0.4 5.2e-08 32.9 0.1 2.2 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein ArsA_ATPase PF02374.15 gi|433591610|ref|YP_007281106.1| - 1.1e-06 28.1 2.4 0.00036 19.8 0.8 2.9 2 1 0 2 2 2 2 Anion-transporting ATPase AAA_26 PF13500.6 gi|433591610|ref|YP_007281106.1| - 4e-05 23.5 0.1 0.15 11.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|433591610|ref|YP_007281106.1| - 0.00029 20.2 0.5 0.00046 19.6 0.5 1.5 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|433591610|ref|YP_007281106.1| - 0.00034 20.1 0.4 0.032 13.7 0.9 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|433591610|ref|YP_007281106.1| - 0.0015 17.9 0.0 0.0026 17.1 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein SRP54 PF00448.22 gi|433591610|ref|YP_007281106.1| - 0.0063 16.2 0.1 0.011 15.4 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Fer4_NifH PF00142.18 gi|433591610|ref|YP_007281106.1| - 0.011 15.2 0.0 0.09 12.2 0.2 2.0 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_18 PF13238.6 gi|433591610|ref|YP_007281106.1| - 0.061 13.9 0.2 0.83 10.2 0.1 2.4 1 1 1 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|433591610|ref|YP_007281106.1| - 0.061 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase T6SS_Vgr PF13296.6 gi|433591610|ref|YP_007281106.1| - 0.11 12.7 0.0 0.26 11.4 0.0 1.6 2 0 0 2 2 1 0 Putative type VI secretion system Rhs element Vgr AAA_25 PF13481.6 gi|433591610|ref|YP_007281106.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|433591610|ref|YP_007281106.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CLP1_P PF16575.5 gi|433591610|ref|YP_007281106.1| - 0.19 11.5 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Ubie_methyltran PF01209.18 gi|433591610|ref|YP_007281106.1| - 0.21 10.9 0.0 0.35 10.2 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Cupin_2 PF07883.11 gi|433591611|ref|YP_007281107.1| - 2.5e-10 39.9 2.1 3.4e-10 39.5 2.1 1.2 1 0 0 1 1 1 1 Cupin domain PCO_ADO PF07847.12 gi|433591611|ref|YP_007281107.1| - 0.00015 21.3 0.0 0.00016 21.2 0.0 1.1 1 0 0 1 1 1 1 PCO_ADO DMSP_lyase PF16867.5 gi|433591611|ref|YP_007281107.1| - 0.0083 15.8 0.1 0.0099 15.5 0.1 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_1 PF00190.22 gi|433591611|ref|YP_007281107.1| - 0.022 14.4 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Cupin Cupin_3 PF05899.12 gi|433591611|ref|YP_007281107.1| - 0.11 12.2 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Asn_synthase PF00733.21 gi|433591612|ref|YP_007281108.1| - 9.6e-32 111.0 7.6 1.6e-21 77.4 2.2 2.1 1 1 1 2 2 2 2 Asparagine synthase tRNA_Me_trans PF03054.16 gi|433591612|ref|YP_007281108.1| - 0.047 12.5 0.1 0.074 11.8 0.1 1.3 1 0 0 1 1 1 0 tRNA methyl transferase NAD_synthase PF02540.17 gi|433591612|ref|YP_007281108.1| - 0.1 11.7 0.0 0.21 10.7 0.0 1.5 1 0 0 1 1 1 0 NAD synthase PHP_C PF13263.6 gi|433591613|ref|YP_007281109.1| - 1.4e-21 76.0 2.0 2.9e-21 74.9 1.4 1.9 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|433591613|ref|YP_007281109.1| - 3.5e-08 33.9 0.0 4.3e-08 33.6 0.0 1.3 1 1 0 1 1 1 1 PHP domain DpaA_N PF16924.5 gi|433591613|ref|YP_007281109.1| - 0.15 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain AIRS_C PF02769.22 gi|433591614|ref|YP_007281110.1| - 1.6e-40 138.8 10.3 4.2e-32 111.4 1.0 3.3 3 0 0 3 3 3 3 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|433591614|ref|YP_007281110.1| - 5.6e-40 135.9 8.2 8.7e-23 80.8 0.3 2.7 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|433591614|ref|YP_007281110.1| - 6.5e-07 29.8 0.1 1.8e-06 28.3 0.1 1.9 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GHMP_kinases_C PF08544.13 gi|433591614|ref|YP_007281110.1| - 0.015 15.6 1.4 0.13 12.7 0.0 2.6 2 0 0 2 2 2 0 GHMP kinases C terminal HalX PF08663.10 gi|433591615|ref|YP_007281111.1| - 1.1e-21 76.9 8.3 2.2e-21 75.9 8.3 1.6 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.24 gi|433591615|ref|YP_007281111.1| - 2.4e-20 72.8 0.4 4.4e-20 71.9 0.4 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|433591616|ref|YP_007281112.1| - 2.7e-22 79.1 8.9 6.1e-13 49.0 0.2 3.3 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|433591616|ref|YP_007281112.1| - 5.8e-13 48.8 0.1 4.4e-05 23.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|433591616|ref|YP_007281112.1| - 9.4e-12 45.4 3.8 3e-11 43.8 0.1 3.0 3 0 0 3 3 3 1 GAF domain PAS_9 PF13426.7 gi|433591616|ref|YP_007281112.1| - 3.4e-11 43.3 0.0 2.1e-05 24.7 0.1 2.6 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|433591616|ref|YP_007281112.1| - 6.6e-09 35.6 0.6 0.0015 18.5 0.0 3.2 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.6 gi|433591616|ref|YP_007281112.1| - 1.7e-08 34.9 0.0 5.8e-08 33.1 0.0 2.0 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|433591616|ref|YP_007281112.1| - 1.5e-05 25.5 0.0 2.9e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase T2SSE PF00437.20 gi|433591616|ref|YP_007281112.1| - 0.33 10.0 0.0 0.33 10.0 0.0 2.4 3 0 0 3 3 3 0 Type II/IV secretion system protein MerR-DNA-bind PF09278.11 gi|433591616|ref|YP_007281112.1| - 3.1 8.4 7.8 0.47 11.0 2.5 2.4 2 0 0 2 2 2 0 MerR, DNA binding Aminotran_1_2 PF00155.21 gi|433591618|ref|YP_007281114.1| - 2.2e-72 244.2 0.0 2.5e-72 244.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|433591618|ref|YP_007281114.1| - 7.8e-06 25.4 0.0 2e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|433591618|ref|YP_007281114.1| - 1.7e-05 24.0 0.0 2.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|433591618|ref|YP_007281114.1| - 0.1 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family AsnC_trans_reg PF01037.21 gi|433591619|ref|YP_007281115.1| - 1e-13 51.1 0.1 2.2e-13 50.0 0.1 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|433591619|ref|YP_007281115.1| - 2.1e-06 27.2 0.2 4.9e-06 26.0 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433591619|ref|YP_007281115.1| - 7e-06 25.8 0.7 1.6e-05 24.6 0.6 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|433591619|ref|YP_007281115.1| - 5.4e-05 23.6 0.1 0.00093 19.7 0.2 2.3 2 1 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|433591619|ref|YP_007281115.1| - 0.00026 20.8 0.2 0.00046 20.0 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|433591619|ref|YP_007281115.1| - 0.011 15.8 0.9 0.031 14.3 0.3 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433591619|ref|YP_007281115.1| - 0.029 14.3 0.1 0.064 13.2 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DprA_WH PF17782.1 gi|433591619|ref|YP_007281115.1| - 0.03 14.4 1.1 0.044 13.9 0.4 1.6 2 0 0 2 2 1 0 DprA winged helix domain She9_MDM33 PF05546.11 gi|433591619|ref|YP_007281115.1| - 0.032 14.0 0.3 0.25 11.1 0.1 2.2 2 1 1 3 3 3 0 She9 / Mdm33 family FeoC PF09012.10 gi|433591619|ref|YP_007281115.1| - 0.035 14.2 0.0 0.062 13.4 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator TrmB PF01978.19 gi|433591619|ref|YP_007281115.1| - 0.037 13.9 0.3 0.068 13.1 0.3 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_54 PF18607.1 gi|433591619|ref|YP_007281115.1| - 0.04 14.0 0.1 0.25 11.4 0.0 2.0 2 0 0 2 2 2 0 ParA helix turn helix domain DUF4347 PF14252.6 gi|433591619|ref|YP_007281115.1| - 0.088 12.7 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4347) DUF2250 PF10007.9 gi|433591619|ref|YP_007281115.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|433591619|ref|YP_007281115.1| - 0.16 12.3 0.0 0.39 11.1 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator SeqA_N PF17206.3 gi|433591620|ref|YP_007281116.1| - 0.11 11.8 0.2 0.24 10.8 0.2 1.6 1 0 0 1 1 1 0 SeqA protein N-terminal domain SAPS PF04499.15 gi|433591620|ref|YP_007281116.1| - 5.1 5.8 8.4 5.9 5.6 8.4 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein AhpC-TSA PF00578.21 gi|433591621|ref|YP_007281117.1| - 6.5e-16 58.4 0.0 8.4e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|433591621|ref|YP_007281117.1| - 1.6e-13 50.6 0.0 1.9e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.6 gi|433591621|ref|YP_007281117.1| - 0.01 16.3 0.0 0.015 15.7 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain TatD_DNase PF01026.21 gi|433591621|ref|YP_007281117.1| - 0.046 13.1 0.0 0.058 12.8 0.0 1.1 1 0 0 1 1 1 0 TatD related DNase GSHPx PF00255.19 gi|433591621|ref|YP_007281117.1| - 0.056 13.0 0.0 0.077 12.6 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase TraF PF13728.6 gi|433591621|ref|YP_007281117.1| - 0.065 13.0 0.0 0.15 11.8 0.0 1.7 1 1 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_8 PF13905.6 gi|433591621|ref|YP_007281117.1| - 0.15 12.4 0.0 0.21 12.0 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin-like T4_deiodinase PF00837.17 gi|433591621|ref|YP_007281117.1| - 0.18 11.1 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Iodothyronine deiodinase HpcH_HpaI PF03328.14 gi|433591622|ref|YP_007281118.1| - 7.8e-31 106.9 0.0 1e-30 106.6 0.0 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Oxidored_FMN PF00724.20 gi|433591623|ref|YP_007281119.1| - 1.8e-65 221.5 0.0 2.3e-65 221.1 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|433591623|ref|YP_007281119.1| - 0.00026 20.2 0.0 0.00037 19.7 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) BtpA PF03437.15 gi|433591624|ref|YP_007281120.1| - 1.6e-78 263.7 1.1 1.9e-78 263.5 1.1 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.20 gi|433591624|ref|YP_007281120.1| - 0.0026 16.6 0.1 0.0058 15.5 0.1 1.7 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.17 gi|433591624|ref|YP_007281120.1| - 5.9 6.3 6.0 8.3 5.8 0.2 2.6 2 1 1 3 3 3 0 PcrB family TctA PF01970.16 gi|433591625|ref|YP_007281121.1| - 3.9e-64 216.9 44.3 4.5e-64 216.7 44.3 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Ribosomal_60s PF00428.19 gi|433591629|ref|YP_007281125.1| - 4.6e-14 52.8 22.8 6.8e-14 52.2 22.8 1.3 1 1 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.11 gi|433591629|ref|YP_007281125.1| - 0.011 14.4 5.8 0.012 14.2 5.8 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 NOA36 PF06524.12 gi|433591629|ref|YP_007281125.1| - 2.7 7.3 12.7 3.1 7.0 12.7 1.1 1 0 0 1 1 1 0 NOA36 protein DUF2457 PF10446.9 gi|433591629|ref|YP_007281125.1| - 4.9 6.2 14.4 5.4 6.0 14.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Sigma70_ner PF04546.13 gi|433591629|ref|YP_007281125.1| - 5.7 6.8 11.2 6.7 6.5 11.2 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region DNA_pol_phi PF04931.13 gi|433591629|ref|YP_007281125.1| - 6.5 4.7 13.1 6.1 4.8 13.1 1.2 1 0 0 1 1 1 0 DNA polymerase phi Ribosomal_L10 PF00466.20 gi|433591630|ref|YP_007281126.1| - 3.4e-24 84.9 0.0 6.1e-24 84.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|433591630|ref|YP_007281126.1| - 2e-16 59.7 0.0 4.1e-16 58.7 0.0 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P RNA_pol_3_Rpc31 PF11705.8 gi|433591630|ref|YP_007281126.1| - 0.07 13.4 11.7 0.13 12.5 11.7 1.4 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Cwf_Cwc_15 PF04889.12 gi|433591630|ref|YP_007281126.1| - 0.68 9.6 13.0 1.1 9.0 13.0 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein PPP4R2 PF09184.11 gi|433591630|ref|YP_007281126.1| - 4.9 6.7 7.8 7.1 6.1 7.8 1.3 1 0 0 1 1 1 0 PPP4R2 Ribosomal_L1 PF00687.21 gi|433591631|ref|YP_007281127.1| - 1.8e-40 138.9 0.0 2.1e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Caps_synth_CapC PF14102.6 gi|433591632|ref|YP_007281128.1| - 0.091 13.2 12.7 0.21 12.0 7.4 2.2 1 1 1 2 2 2 0 Capsule biosynthesis CapC VKOR PF07884.14 gi|433591632|ref|YP_007281128.1| - 3.1 8.0 9.2 1.9 8.7 5.5 2.2 1 1 1 2 2 2 0 Vitamin K epoxide reductase family Ribosomal_L11 PF00298.19 gi|433591633|ref|YP_007281129.1| - 2.4e-21 76.0 0.0 3.7e-21 75.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|433591633|ref|YP_007281129.1| - 1.4e-17 63.2 0.1 2.1e-17 62.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain CutA1 PF03091.15 gi|433591634|ref|YP_007281130.1| - 2.5e-27 94.6 0.0 2.7e-27 94.5 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein NDUF_C2 PF06374.11 gi|433591634|ref|YP_007281130.1| - 0.2 11.8 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) LDB19 PF13002.7 gi|433591635|ref|YP_007281131.1| - 0.064 12.9 0.0 0.075 12.7 0.0 1.0 1 0 0 1 1 1 0 Arrestin_N terminal like PEPCK_ATP PF01293.20 gi|433591636|ref|YP_007281132.1| - 1.8e-59 201.6 0.0 5.5e-59 200.1 0.0 1.7 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase DUF1664 PF07889.12 gi|433591637|ref|YP_007281133.1| - 9.2e-22 77.4 38.3 0.0057 16.7 0.4 10.6 1 1 9 11 11 11 8 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|433591637|ref|YP_007281133.1| - 5.7e-19 68.5 49.5 0.0021 18.1 0.4 9.0 2 1 7 9 9 8 7 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|433591637|ref|YP_007281133.1| - 3.3e-15 56.3 60.6 0.0096 16.4 1.4 12.7 1 1 9 12 12 12 4 Nucleopolyhedrovirus P10 protein Apolipoprotein PF01442.18 gi|433591637|ref|YP_007281133.1| - 1e-14 54.9 108.0 1.2e-06 28.6 17.5 6.7 2 1 5 7 7 7 4 Apolipoprotein A1/A4/E domain FlaC_arch PF05377.11 gi|433591637|ref|YP_007281133.1| - 9.4e-14 51.6 30.8 4.1 7.9 0.1 14.7 9 4 3 14 14 13 0 Flagella accessory protein C (FlaC) IFT57 PF10498.9 gi|433591637|ref|YP_007281133.1| - 1.6e-11 43.8 14.7 0.025 13.6 0.0 5.3 1 1 4 5 5 5 4 Intra-flagellar transport protein 57 MscS_porin PF12795.7 gi|433591637|ref|YP_007281133.1| - 1.7e-11 44.1 57.6 0.00036 20.2 10.3 6.4 1 1 6 7 7 7 4 Mechanosensitive ion channel porin domain Spc7 PF08317.11 gi|433591637|ref|YP_007281133.1| - 2e-11 43.4 55.0 0.013 14.4 4.0 6.5 1 1 5 6 6 6 6 Spc7 kinetochore protein EzrA PF06160.12 gi|433591637|ref|YP_007281133.1| - 1.2e-10 40.2 30.4 1.3e-05 23.6 3.5 4.4 1 1 0 3 3 3 3 Septation ring formation regulator, EzrA DUF16 PF01519.16 gi|433591637|ref|YP_007281133.1| - 4e-10 40.1 21.7 0.0014 19.1 0.7 8.4 1 1 5 6 6 6 2 Protein of unknown function DUF16 AAA_13 PF13166.6 gi|433591637|ref|YP_007281133.1| - 4.9e-10 38.7 34.0 9.5e-05 21.2 5.8 4.2 1 1 3 4 4 4 4 AAA domain GAS PF13851.6 gi|433591637|ref|YP_007281133.1| - 1.2e-09 37.8 19.9 0.066 12.6 0.3 6.4 1 1 5 6 6 6 4 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.10 gi|433591637|ref|YP_007281133.1| - 4.2e-09 36.7 7.3 0.097 12.9 0.0 7.3 1 1 7 9 9 9 1 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.6 gi|433591637|ref|YP_007281133.1| - 6.4e-09 36.1 14.8 0.87 10.1 0.0 9.1 3 3 6 9 9 8 1 Snapin/Pallidin DUF4795 PF16043.5 gi|433591637|ref|YP_007281133.1| - 3.3e-08 33.4 50.8 0.0005 19.7 8.1 6.3 1 1 5 6 6 6 3 Domain of unknown function (DUF4795) Atg14 PF10186.9 gi|433591637|ref|YP_007281133.1| - 3.5e-08 32.9 8.2 0.16 11.1 0.5 5.2 1 1 2 5 5 5 2 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3584 PF12128.8 gi|433591637|ref|YP_007281133.1| - 5.7e-08 30.8 60.9 5.7e-05 20.9 18.3 4.1 1 1 3 4 4 4 3 Protein of unknown function (DUF3584) Exonuc_VII_L PF02601.15 gi|433591637|ref|YP_007281133.1| - 1.5e-07 31.3 13.8 0.095 12.3 3.2 5.2 1 1 1 2 2 2 2 Exonuclease VII, large subunit Laminin_II PF06009.12 gi|433591637|ref|YP_007281133.1| - 1.5e-07 31.5 41.3 0.0073 16.3 1.5 8.5 1 1 7 9 9 9 2 Laminin Domain II Spectrin PF00435.21 gi|433591637|ref|YP_007281133.1| - 1.6e-07 31.7 38.8 0.21 12.1 2.6 8.7 1 1 8 9 9 9 2 Spectrin repeat ABC_tran_CTD PF16326.5 gi|433591637|ref|YP_007281133.1| - 1.9e-07 31.2 84.2 0.004 17.4 4.7 12.7 2 2 11 15 15 15 3 ABC transporter C-terminal domain Prefoldin_2 PF01920.20 gi|433591637|ref|YP_007281133.1| - 2.7e-07 30.5 32.4 0.75 9.8 0.1 12.0 6 5 6 12 12 12 1 Prefoldin subunit CENP-F_leu_zip PF10473.9 gi|433591637|ref|YP_007281133.1| - 3.9e-07 30.2 52.8 0.012 15.7 1.8 8.1 2 1 6 8 8 8 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF5082 PF16888.5 gi|433591637|ref|YP_007281133.1| - 6.7e-07 29.6 17.9 0.064 13.5 0.3 7.3 1 1 7 8 8 7 1 Domain of unknown function (DUF5082) BLOC1_2 PF10046.9 gi|433591637|ref|YP_007281133.1| - 9.3e-07 29.1 41.9 0.38 11.1 0.3 10.2 3 3 8 11 11 11 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 HMMR_N PF15905.5 gi|433591637|ref|YP_007281133.1| - 1.2e-06 28.3 31.2 0.06 12.8 3.2 5.7 1 1 3 5 5 5 2 Hyaluronan mediated motility receptor N-terminal FapA PF03961.13 gi|433591637|ref|YP_007281133.1| - 3.1e-06 26.1 2.7 7.9 5.0 0.0 5.8 1 1 6 7 7 7 0 Flagellar Assembly Protein A ATG16 PF08614.11 gi|433591637|ref|YP_007281133.1| - 3.9e-06 27.2 77.2 0.31 11.2 5.9 7.0 1 1 4 6 6 6 3 Autophagy protein 16 (ATG16) Prominin PF05478.11 gi|433591637|ref|YP_007281133.1| - 4.2e-06 25.0 9.8 0.0073 14.3 0.1 3.7 1 1 1 3 3 3 2 Prominin MAD PF05557.13 gi|433591637|ref|YP_007281133.1| - 6.7e-06 24.8 28.6 0.0007 18.1 22.3 2.4 1 1 0 2 2 2 2 Mitotic checkpoint protein COG2 PF06148.11 gi|433591637|ref|YP_007281133.1| - 1.6e-05 25.0 40.5 1.2 9.2 1.0 9.5 2 2 5 7 7 7 2 COG (conserved oligomeric Golgi) complex component, COG2 SKA1 PF07160.12 gi|433591637|ref|YP_007281133.1| - 1.9e-05 24.6 7.6 4.3 7.1 0.0 7.1 1 1 6 8 8 8 0 Spindle and kinetochore-associated protein 1 Nup54 PF13874.6 gi|433591637|ref|YP_007281133.1| - 2.9e-05 24.2 17.5 0.19 11.9 1.4 6.8 1 1 1 4 4 4 1 Nucleoporin complex subunit 54 DUF4201 PF13870.6 gi|433591637|ref|YP_007281133.1| - 2.9e-05 23.9 6.8 5.9 6.6 0.1 5.9 2 2 3 6 6 5 0 Domain of unknown function (DUF4201) ZapB PF06005.12 gi|433591637|ref|YP_007281133.1| - 3.9e-05 24.0 17.7 7.1 7.1 0.1 8.4 3 2 1 4 4 4 0 Cell division protein ZapB TMF_TATA_bd PF12325.8 gi|433591637|ref|YP_007281133.1| - 4.3e-05 23.7 49.2 0.0078 16.4 0.9 8.7 1 1 8 10 10 10 2 TATA element modulatory factor 1 TATA binding CLZ PF16526.5 gi|433591637|ref|YP_007281133.1| - 6.1e-05 23.3 59.4 0.98 9.8 0.8 13.2 2 2 10 14 14 14 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels OmpH PF03938.14 gi|433591637|ref|YP_007281133.1| - 8.1e-05 23.0 19.9 1.1 9.5 0.3 7.1 1 1 5 7 7 6 2 Outer membrane protein (OmpH-like) XhlA PF10779.9 gi|433591637|ref|YP_007281133.1| - 0.00012 22.2 62.8 0.04 14.1 0.5 13.2 5 4 10 16 16 15 2 Haemolysin XhlA KxDL PF10241.9 gi|433591637|ref|YP_007281133.1| - 0.00013 22.2 4.2 1.2 9.5 0.0 6.9 4 3 4 8 8 6 1 Uncharacterized conserved protein Golgin_A5 PF09787.9 gi|433591637|ref|YP_007281133.1| - 0.00019 21.0 40.3 0.0037 16.8 2.7 6.0 1 1 3 5 5 5 1 Golgin subfamily A member 5 DUF2730 PF10805.8 gi|433591637|ref|YP_007281133.1| - 0.00023 21.2 42.7 0.13 12.4 0.4 10.8 2 2 11 13 13 13 1 Protein of unknown function (DUF2730) HrpB7 PF09486.10 gi|433591637|ref|YP_007281133.1| - 0.00026 21.4 108.1 0.031 14.7 13.7 8.0 2 1 6 8 8 7 3 Bacterial type III secretion protein (HrpB7) TMPIT PF07851.13 gi|433591637|ref|YP_007281133.1| - 0.00029 20.2 5.2 3.6 6.7 0.0 5.3 2 1 3 7 7 7 0 TMPIT-like protein DUF4407 PF14362.6 gi|433591637|ref|YP_007281133.1| - 0.00029 20.3 81.0 0.018 14.4 14.8 6.7 1 1 5 6 6 6 2 Domain of unknown function (DUF4407) Seryl_tRNA_N PF02403.22 gi|433591637|ref|YP_007281133.1| - 0.00039 20.6 43.4 0.16 12.2 0.3 10.1 2 2 7 9 9 9 2 Seryl-tRNA synthetase N-terminal domain Fez1 PF06818.15 gi|433591637|ref|YP_007281133.1| - 0.00045 20.7 37.6 5.3 7.4 0.4 6.2 1 1 2 3 3 2 0 Fez1 Tropomyosin_1 PF12718.7 gi|433591637|ref|YP_007281133.1| - 0.0013 18.9 8.5 0.0013 18.9 8.5 7.6 1 1 6 8 8 8 1 Tropomyosin like Sec34 PF04136.15 gi|433591637|ref|YP_007281133.1| - 0.0013 18.6 20.8 0.054 13.4 0.2 7.6 1 1 3 7 7 7 1 Sec34-like family CorA PF01544.18 gi|433591637|ref|YP_007281133.1| - 0.0015 17.9 3.9 0.0015 17.9 3.9 7.1 1 1 4 7 7 7 3 CorA-like Mg2+ transporter protein Rx_N PF18052.1 gi|433591637|ref|YP_007281133.1| - 0.0015 18.7 4.3 0.0015 18.7 4.3 9.4 2 2 8 10 10 10 1 Rx N-terminal domain Tropomyosin PF00261.20 gi|433591637|ref|YP_007281133.1| - 0.0016 17.9 86.9 0.22 10.9 14.1 4.9 1 1 1 4 4 4 2 Tropomyosin Mod_r PF07200.13 gi|433591637|ref|YP_007281133.1| - 0.0016 18.6 37.9 0.12 12.5 2.3 6.2 1 1 5 6 6 6 1 Modifier of rudimentary (Mod(r)) protein Leu_zip PF15294.6 gi|433591637|ref|YP_007281133.1| - 0.0019 17.8 35.9 0.091 12.3 2.8 5.9 2 1 3 6 6 6 2 Leucine zipper ING PF12998.7 gi|433591637|ref|YP_007281133.1| - 0.0025 18.4 13.5 1.8 9.2 0.3 5.3 3 2 1 5 5 3 1 Inhibitor of growth proteins N-terminal histone-binding Bacillus_HBL PF05791.11 gi|433591637|ref|YP_007281133.1| - 0.0026 17.6 0.2 0.0026 17.6 0.2 6.1 3 2 3 7 7 7 1 Bacillus haemolytic enterotoxin (HBL) APG6_N PF17675.1 gi|433591637|ref|YP_007281133.1| - 0.0049 17.4 84.7 3.9 8.0 2.0 9.3 1 1 6 7 7 7 0 Apg6 coiled-coil region TPR_MLP1_2 PF07926.12 gi|433591637|ref|YP_007281133.1| - 0.0068 16.5 55.2 0.1 12.7 6.4 8.8 1 1 4 8 8 8 2 TPR/MLP1/MLP2-like protein SlyX PF04102.12 gi|433591637|ref|YP_007281133.1| - 0.0072 16.9 55.9 1.2 9.8 1.1 11.6 1 1 9 13 13 13 1 SlyX UPF0242 PF06785.11 gi|433591637|ref|YP_007281133.1| - 0.0096 16.0 25.0 1.7 8.7 0.2 5.7 2 2 3 5 5 5 1 Uncharacterised protein family (UPF0242) N-terminus Lebercilin PF15619.6 gi|433591637|ref|YP_007281133.1| - 0.012 15.3 28.5 0.22 11.2 5.4 5.3 1 1 3 6 6 6 0 Ciliary protein causing Leber congenital amaurosis disease ADIP PF11559.8 gi|433591637|ref|YP_007281133.1| - 0.013 15.6 28.6 3.5 7.7 0.1 7.4 1 1 5 8 8 7 0 Afadin- and alpha -actinin-Binding DUF4763 PF15960.5 gi|433591637|ref|YP_007281133.1| - 0.015 14.6 3.0 1.3 8.3 0.1 3.2 2 2 0 2 2 2 0 Domain of unknown function (DUF4763) Phage_Mu_Gam PF07352.12 gi|433591637|ref|YP_007281133.1| - 0.02 14.8 18.2 4.8 7.1 0.1 6.1 6 0 0 6 6 5 0 Bacteriophage Mu Gam like protein TolA_bind_tri PF16331.5 gi|433591637|ref|YP_007281133.1| - 0.021 14.9 35.4 0.96 9.6 1.4 9.2 7 3 2 10 10 9 0 TolA binding protein trimerisation Lectin_N PF03954.14 gi|433591637|ref|YP_007281133.1| - 0.023 14.4 19.3 1.2 8.9 0.1 6.1 4 2 1 6 6 6 0 Hepatic lectin, N-terminal domain Not3 PF04065.15 gi|433591637|ref|YP_007281133.1| - 0.023 14.1 25.0 0.63 9.4 1.0 6.1 2 2 4 6 6 6 0 Not1 N-terminal domain, CCR4-Not complex component T3SS_needle_F PF09392.10 gi|433591637|ref|YP_007281133.1| - 0.035 14.3 2.7 1.2 9.4 0.3 4.7 3 1 0 3 3 2 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF TRPM_tetra PF16519.5 gi|433591637|ref|YP_007281133.1| - 0.036 14.2 10.6 0.22 11.6 0.3 5.8 5 1 0 5 5 3 0 Tetramerisation domain of TRPM FmiP_Thoc5 PF09766.9 gi|433591637|ref|YP_007281133.1| - 0.039 13.3 8.8 3.1 7.0 0.4 6.4 2 2 4 8 8 8 0 Fms-interacting protein/Thoc5 DUF1640 PF07798.11 gi|433591637|ref|YP_007281133.1| - 0.04 14.0 33.5 2.4 8.2 1.5 6.0 2 1 2 5 5 5 0 Protein of unknown function (DUF1640) Fmp27_WPPW PF10359.9 gi|433591637|ref|YP_007281133.1| - 0.042 12.7 22.5 0.41 9.4 0.6 5.9 1 1 4 5 5 5 0 RNA pol II promoter Fmp27 protein domain YojJ PF10372.9 gi|433591637|ref|YP_007281133.1| - 0.051 13.7 8.5 0.11 12.6 0.1 5.7 8 0 0 8 8 2 0 Bacterial membrane-spanning protein N-terminus SHE3 PF17078.5 gi|433591637|ref|YP_007281133.1| - 0.06 13.0 21.5 0.23 11.2 0.3 5.7 1 1 5 6 6 6 0 SWI5-dependent HO expression protein 3 DUF3450 PF11932.8 gi|433591637|ref|YP_007281133.1| - 0.064 12.5 44.3 0.96 8.7 6.5 6.5 1 1 3 6 6 6 0 Protein of unknown function (DUF3450) DUF948 PF06103.11 gi|433591637|ref|YP_007281133.1| - 0.089 13.1 0.1 0.089 13.1 0.1 9.7 1 1 4 5 5 4 0 Bacterial protein of unknown function (DUF948) Fzo_mitofusin PF04799.13 gi|433591637|ref|YP_007281133.1| - 0.11 12.1 18.8 11 5.6 0.2 7.3 2 2 3 7 7 7 0 fzo-like conserved region V_ATPase_I PF01496.19 gi|433591637|ref|YP_007281133.1| - 0.14 10.1 13.3 3.2 5.6 0.4 4.9 2 2 3 5 5 5 0 V-type ATPase 116kDa subunit family FAM76 PF16046.5 gi|433591637|ref|YP_007281133.1| - 0.16 11.3 11.5 2.6 7.3 0.0 4.5 3 2 1 4 4 4 0 FAM76 protein CdvA PF18822.1 gi|433591637|ref|YP_007281133.1| - 0.23 11.3 32.0 0.022 14.6 0.9 8.2 2 2 3 7 7 7 0 CdvA-like coiled-coil domain Muted PF14942.6 gi|433591637|ref|YP_007281133.1| - 0.51 10.7 16.2 2 8.8 0.4 5.8 2 2 4 7 7 7 0 Organelle biogenesis, Muted-like protein Enkurin PF13864.6 gi|433591637|ref|YP_007281133.1| - 0.56 10.7 13.8 1.8 9.0 0.0 5.9 4 2 1 5 5 3 0 Calmodulin-binding TBCC_N PF16752.5 gi|433591637|ref|YP_007281133.1| - 0.58 10.6 43.0 0.78 10.2 0.9 8.8 1 1 8 10 10 10 0 Tubulin-specific chaperone C N-terminal domain DUF4618 PF15397.6 gi|433591637|ref|YP_007281133.1| - 0.73 9.2 23.2 2.4 7.5 0.2 6.4 3 2 0 5 5 5 0 Domain of unknown function (DUF4618) Matrilin_ccoil PF10393.9 gi|433591637|ref|YP_007281133.1| - 1.1 9.2 25.2 13 5.7 0.1 9.3 10 1 0 10 10 8 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF724 PF05266.14 gi|433591637|ref|YP_007281133.1| - 2.3 8.0 20.5 3.6 7.4 0.2 5.7 1 1 6 7 7 7 0 Protein of unknown function (DUF724) MbeD_MobD PF04899.12 gi|433591637|ref|YP_007281133.1| - 2.6 8.2 7.4 89 3.3 0.0 6.3 6 2 2 9 9 4 0 MbeD/MobD like DASH_Spc19 PF08287.11 gi|433591637|ref|YP_007281133.1| - 4.9 7.0 35.4 0.75 9.7 2.7 7.9 2 2 7 9 9 9 0 Spc19 DUF812 PF05667.11 gi|433591637|ref|YP_007281133.1| - 5 5.9 38.7 1.1 8.0 13.4 4.7 1 1 3 4 4 3 0 Protein of unknown function (DUF812) FH2 PF02181.23 gi|433591637|ref|YP_007281133.1| - 5.7 5.9 21.0 2.9 6.9 1.1 6.0 1 1 7 8 8 8 0 Formin Homology 2 Domain Helo_like_N PF17111.5 gi|433591637|ref|YP_007281133.1| - 6.3 6.1 36.8 2.1 7.7 5.0 8.5 1 1 4 6 6 6 0 Fungal N-terminal domain of STAND proteins DUF2408 PF10303.9 gi|433591637|ref|YP_007281133.1| - 8.6 6.9 26.1 18 5.9 0.3 5.5 2 1 0 3 3 3 0 Protein of unknown function (DUF2408) Zn-ribbon_8 PF09723.10 gi|433591638|ref|YP_007281134.1| - 0.00018 21.6 2.5 0.00031 20.8 2.5 1.4 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|433591638|ref|YP_007281134.1| - 0.0076 16.3 0.5 0.0077 16.2 0.5 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|433591638|ref|YP_007281134.1| - 0.0099 15.8 1.0 1.2 9.1 0.0 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|433591638|ref|YP_007281134.1| - 0.013 14.9 4.2 0.13 11.7 4.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DUF1272 PF06906.11 gi|433591638|ref|YP_007281134.1| - 0.014 15.5 1.1 0.018 15.1 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-Di19 PF05605.12 gi|433591638|ref|YP_007281134.1| - 0.02 15.2 0.4 0.044 14.1 0.0 1.7 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding TFIIS_C PF01096.18 gi|433591638|ref|YP_007281134.1| - 0.029 14.2 1.0 1.8 8.5 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DZR PF12773.7 gi|433591638|ref|YP_007281134.1| - 0.03 14.3 1.2 0.081 13.0 1.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|433591638|ref|YP_007281134.1| - 0.048 13.4 1.8 2.3 8.0 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|433591638|ref|YP_007281134.1| - 0.054 13.0 4.4 0.52 9.9 4.4 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.12 gi|433591638|ref|YP_007281134.1| - 0.054 13.8 2.8 0.23 11.8 0.2 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-C2H2_4 PF13894.6 gi|433591638|ref|YP_007281134.1| - 0.06 14.2 0.2 5.5 8.1 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_9 PF14369.6 gi|433591638|ref|YP_007281134.1| - 0.083 13.2 2.9 0.39 11.0 3.0 1.9 1 1 1 2 2 2 0 zinc-ribbon DUF2072 PF09845.9 gi|433591638|ref|YP_007281134.1| - 0.093 13.0 0.6 0.11 12.8 0.6 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein Cas_CXXC_CXXC PF09706.10 gi|433591638|ref|YP_007281134.1| - 0.094 13.0 1.1 0.094 13.0 1.1 2.0 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) Zn_ribbon_SprT PF17283.2 gi|433591638|ref|YP_007281134.1| - 0.096 12.6 3.4 1.4 8.9 3.4 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-C2H2 PF00096.26 gi|433591638|ref|YP_007281134.1| - 0.41 11.2 4.3 7.3 7.3 0.5 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-Di19 PF05605.12 gi|433591639|ref|YP_007281135.1| - 0.0088 16.3 0.1 0.012 15.9 0.1 1.3 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|433591639|ref|YP_007281135.1| - 0.024 14.6 0.2 0.062 13.3 0.1 1.7 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|433591640|ref|YP_007281136.1| - 0.0015 18.2 4.7 0.0038 16.9 4.7 1.7 1 1 0 1 1 1 1 Rubredoxin metal binding domain HypA PF01155.19 gi|433591640|ref|YP_007281136.1| - 0.0085 16.1 0.5 0.0099 15.9 0.5 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ogr_Delta PF04606.12 gi|433591640|ref|YP_007281136.1| - 0.015 15.2 2.7 0.18 11.8 0.2 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.7 gi|433591640|ref|YP_007281136.1| - 0.017 15.1 1.7 2.2 8.3 0.2 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF3624 PF12292.8 gi|433591640|ref|YP_007281136.1| - 0.026 14.9 1.0 0.042 14.3 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3624) Zn-ribbon_8 PF09723.10 gi|433591640|ref|YP_007281136.1| - 0.046 13.9 5.7 0.18 12.0 5.7 1.9 1 1 0 1 1 1 0 Zinc ribbon domain MCR PF18509.1 gi|433591640|ref|YP_007281136.1| - 0.085 12.4 1.2 0.085 12.4 1.2 2.1 2 0 0 2 2 2 0 Magnetochrome domain TF_Zn_Ribbon PF08271.12 gi|433591640|ref|YP_007281136.1| - 0.14 11.7 2.7 7.2 6.2 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 gi|433591640|ref|YP_007281136.1| - 0.18 11.7 5.5 0.23 11.4 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|433591640|ref|YP_007281136.1| - 0.56 9.7 5.9 4 7.0 5.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|433591640|ref|YP_007281136.1| - 1.1 9.2 8.7 0.66 9.9 0.3 2.6 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) SHOCT PF09851.9 gi|433591644|ref|YP_007281140.1| - 3.1e-09 36.3 0.1 5.3e-09 35.5 0.1 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|433591644|ref|YP_007281140.1| - 0.0026 17.8 4.0 0.0051 16.8 4.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) Hydrolase_6 PF13344.6 gi|433591645|ref|YP_007281141.1| - 7.8e-23 80.5 0.0 6.2e-22 77.6 0.0 2.3 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433591645|ref|YP_007281141.1| - 2.8e-22 78.5 1.0 9.6e-22 76.8 1.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|433591645|ref|YP_007281141.1| - 7e-07 29.7 0.8 5.5e-06 26.8 0.8 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|433591645|ref|YP_007281141.1| - 8.3e-06 26.0 0.0 0.00014 22.0 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|433591645|ref|YP_007281141.1| - 0.0062 16.2 0.1 0.012 15.3 0.1 1.4 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase Peripla_BP_6 PF13458.6 gi|433591645|ref|YP_007281141.1| - 0.032 13.9 1.0 0.3 10.7 0.3 2.2 1 1 1 2 2 2 0 Periplasmic binding protein Gly-zipper_Omp PF13488.6 gi|433591646|ref|YP_007281142.1| - 1e-05 25.4 32.4 0.00024 21.0 5.0 2.1 1 1 2 3 3 3 3 Glycine zipper Gly-zipper_YMGG PF13441.6 gi|433591646|ref|YP_007281142.1| - 3.7e-05 23.4 21.0 4.3e-05 23.1 20.4 1.4 1 1 0 1 1 1 1 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.15 gi|433591646|ref|YP_007281142.1| - 0.00019 21.2 21.2 0.00023 21.0 19.7 1.8 1 1 1 2 2 2 2 Glycine zipper 2TM domain TraT PF05818.12 gi|433591646|ref|YP_007281142.1| - 0.35 10.5 4.1 0.38 10.4 4.1 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Gly-zipper_OmpA PF13436.6 gi|433591646|ref|YP_007281142.1| - 0.62 9.9 20.9 1.2 8.9 20.8 1.6 1 1 0 1 1 1 0 Glycine-zipper domain Romo1 PF10247.9 gi|433591646|ref|YP_007281142.1| - 3.8 8.0 11.1 13 6.2 3.9 2.1 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 4HBT PF03061.22 gi|433591647|ref|YP_007281143.1| - 8e-16 58.2 0.2 1.2e-15 57.7 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily TraB PF01963.17 gi|433591648|ref|YP_007281144.1| - 1.1e-26 94.3 0.1 5.3e-16 59.3 0.0 2.1 2 0 0 2 2 2 2 TraB family DUF2371 PF10177.9 gi|433591648|ref|YP_007281144.1| - 0.12 12.6 0.3 0.71 10.1 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) PAP2 PF01569.21 gi|433591648|ref|YP_007281144.1| - 0.19 11.5 0.0 0.19 11.5 0.0 3.3 2 1 0 2 2 2 0 PAP2 superfamily Peptidase_M50 PF02163.22 gi|433591649|ref|YP_007281145.1| - 9e-06 25.1 14.1 0.007 15.7 0.5 3.1 1 1 1 2 2 2 2 Peptidase family M50 AIRS_C PF02769.22 gi|433591650|ref|YP_007281146.1| - 1.7e-21 77.0 0.0 2.9e-21 76.2 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|433591650|ref|YP_007281146.1| - 6.8e-13 49.1 1.4 2.6e-12 47.2 1.6 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Usp PF00582.26 gi|433591651|ref|YP_007281147.1| - 1.6e-31 109.7 0.4 1.8e-31 109.6 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Macro PF01661.21 gi|433591652|ref|YP_007281148.1| - 4.2e-27 94.5 0.1 5.4e-27 94.2 0.1 1.2 1 0 0 1 1 1 1 Macro domain Ferritin PF00210.24 gi|433591655|ref|YP_007281151.1| - 1.2e-32 112.8 4.4 1.5e-32 112.5 4.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain Rep_trans PF02486.19 gi|433591655|ref|YP_007281151.1| - 0.13 12.0 0.3 0.2 11.3 0.3 1.3 1 0 0 1 1 1 0 Replication initiation factor Aldedh PF00171.22 gi|433591656|ref|YP_007281152.1| - 8.2e-141 469.7 0.4 9.4e-141 469.5 0.4 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Zeta_toxin PF06414.12 gi|433591656|ref|YP_007281152.1| - 0.091 12.0 0.0 2.8 7.2 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin PfkB PF00294.24 gi|433591658|ref|YP_007281154.1| - 3.7e-62 210.4 0.1 4.1e-62 210.2 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Virul_fac_BrkB PF03631.15 gi|433591659|ref|YP_007281155.1| - 2.2e-40 138.9 23.8 2.9e-40 138.5 23.8 1.1 1 0 0 1 1 1 1 Virulence factor BrkB ZapB PF06005.12 gi|433591659|ref|YP_007281155.1| - 5.5e-05 23.5 13.8 6.2e-05 23.4 1.5 2.3 1 1 1 2 2 2 1 Cell division protein ZapB ERM PF00769.19 gi|433591659|ref|YP_007281155.1| - 0.0003 20.7 8.1 0.00041 20.2 8.1 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family CENP-F_leu_zip PF10473.9 gi|433591659|ref|YP_007281155.1| - 0.001 19.1 6.3 0.0016 18.4 6.3 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 bZIP_1 PF00170.21 gi|433591659|ref|YP_007281155.1| - 0.0011 19.0 14.7 0.002 18.2 14.7 1.4 1 0 0 1 1 1 1 bZIP transcription factor GAS PF13851.6 gi|433591659|ref|YP_007281155.1| - 0.008 15.5 3.6 0.012 15.0 3.6 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding UPF0242 PF06785.11 gi|433591659|ref|YP_007281155.1| - 0.016 15.3 0.5 0.038 14.1 0.0 1.9 2 0 0 2 2 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF3450 PF11932.8 gi|433591659|ref|YP_007281155.1| - 0.022 14.1 0.5 0.037 13.3 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) KASH_CCD PF14662.6 gi|433591659|ref|YP_007281155.1| - 0.023 14.5 1.0 0.023 14.5 1.0 2.1 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH Phlebovirus_NSM PF07246.11 gi|433591659|ref|YP_007281155.1| - 0.035 13.5 3.1 0.052 12.9 3.1 1.2 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M DivIC PF04977.15 gi|433591659|ref|YP_007281155.1| - 0.041 13.7 10.4 0.039 13.7 2.5 2.7 1 1 1 2 2 2 0 Septum formation initiator Tho2 PF11262.8 gi|433591659|ref|YP_007281155.1| - 0.041 13.1 2.3 0.061 12.5 2.3 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 FlaC_arch PF05377.11 gi|433591659|ref|YP_007281155.1| - 0.064 13.7 1.0 0.34 11.3 0.1 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) JIP_LZII PF16471.5 gi|433591659|ref|YP_007281155.1| - 0.073 13.3 10.5 0.089 13.0 3.7 2.3 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II DUF4686 PF15742.5 gi|433591659|ref|YP_007281155.1| - 0.085 12.0 5.4 0.12 11.5 5.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4686) TPR_MLP1_2 PF07926.12 gi|433591659|ref|YP_007281155.1| - 0.086 12.9 5.7 0.17 12.0 5.7 1.5 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein YabA PF06156.13 gi|433591659|ref|YP_007281155.1| - 0.14 12.8 0.6 0.14 12.8 0.6 1.9 1 1 1 2 2 2 0 Initiation control protein YabA ADIP PF11559.8 gi|433591659|ref|YP_007281155.1| - 0.15 12.1 8.8 0.24 11.5 8.8 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF4988 PF16378.5 gi|433591659|ref|YP_007281155.1| - 0.16 11.7 1.2 0.22 11.2 0.4 1.6 2 0 0 2 2 2 0 Domain of unknown function Spc7 PF08317.11 gi|433591659|ref|YP_007281155.1| - 0.17 10.7 2.2 0.26 10.1 2.2 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein TSC22 PF01166.18 gi|433591659|ref|YP_007281155.1| - 0.18 12.2 6.3 0.11 12.8 1.5 2.2 2 0 0 2 2 2 0 TSC-22/dip/bun family M PF02370.16 gi|433591659|ref|YP_007281155.1| - 0.18 12.4 5.6 1.3 9.8 0.8 2.7 2 1 0 2 2 2 0 M protein repeat Prefoldin_2 PF01920.20 gi|433591659|ref|YP_007281155.1| - 0.2 11.6 4.5 0.24 11.4 0.7 2.3 1 1 1 2 2 2 0 Prefoldin subunit Cnn_1N PF07989.11 gi|433591659|ref|YP_007281155.1| - 0.2 11.8 7.9 0.18 12.0 1.1 2.2 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 APG6_N PF17675.1 gi|433591659|ref|YP_007281155.1| - 0.34 11.4 14.1 1.5 9.4 14.1 1.8 1 1 0 1 1 1 0 Apg6 coiled-coil region Jnk-SapK_ap_N PF09744.9 gi|433591659|ref|YP_007281155.1| - 0.38 11.0 9.6 0.63 10.2 9.6 1.3 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 HALZ PF02183.18 gi|433591659|ref|YP_007281155.1| - 0.52 10.6 8.2 0.18 12.0 1.4 2.6 2 0 0 2 2 2 0 Homeobox associated leucine zipper DUF5368 PF17336.2 gi|433591659|ref|YP_007281155.1| - 0.55 10.4 9.9 0.037 14.2 4.3 2.0 2 1 0 2 2 1 0 Family of unknown function (DUF5368) HAUS-augmin3 PF14932.6 gi|433591659|ref|YP_007281155.1| - 0.63 9.6 2.4 0.93 9.0 2.4 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF4140 PF13600.6 gi|433591659|ref|YP_007281155.1| - 0.85 10.1 15.6 4.1 7.9 5.2 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Atg14 PF10186.9 gi|433591659|ref|YP_007281155.1| - 0.86 8.6 5.1 1.2 8.2 5.1 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 ABC_tran_CTD PF16326.5 gi|433591659|ref|YP_007281155.1| - 2.1 8.7 8.0 0.44 10.8 1.2 2.2 1 1 0 1 1 1 0 ABC transporter C-terminal domain Shugoshin_N PF07558.11 gi|433591659|ref|YP_007281155.1| - 2.5 8.0 9.5 2.1 8.3 1.3 2.3 2 0 0 2 2 2 0 Shugoshin N-terminal coiled-coil region Ax_dynein_light PF10211.9 gi|433591659|ref|YP_007281155.1| - 2.7 7.9 8.4 0.99 9.3 0.8 2.1 1 1 1 2 2 2 0 Axonemal dynein light chain Nnf1 PF03980.14 gi|433591659|ref|YP_007281155.1| - 3.3 8.1 10.3 11 6.4 2.9 2.2 1 1 1 2 2 2 0 Nnf1 Spc24 PF08286.11 gi|433591659|ref|YP_007281155.1| - 5.4 7.3 6.3 2.6 8.3 1.0 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Cep57_CLD_2 PF14197.6 gi|433591659|ref|YP_007281155.1| - 6.1 7.0 18.3 0.28 11.3 3.3 2.4 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 ZnuA PF01297.17 gi|433591661|ref|YP_007281157.1| - 3.7e-42 144.5 0.0 4.7e-42 144.2 0.0 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|433591662|ref|YP_007281158.1| - 8.6e-30 104.0 0.0 1.2e-29 103.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433591662|ref|YP_007281158.1| - 1.3e-12 48.2 0.7 3e-06 27.3 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|433591662|ref|YP_007281158.1| - 0.00013 21.5 0.2 0.00064 19.2 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Peripla_BP_4 PF13407.6 gi|433591662|ref|YP_007281158.1| - 0.00022 20.9 0.1 0.00031 20.4 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain AAA_29 PF13555.6 gi|433591662|ref|YP_007281158.1| - 0.0044 16.7 0.1 0.01 15.6 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|433591662|ref|YP_007281158.1| - 0.0078 16.5 0.4 0.057 13.7 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|433591662|ref|YP_007281158.1| - 0.01 16.4 0.0 0.012 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|433591662|ref|YP_007281158.1| - 0.013 15.7 0.2 0.078 13.1 0.2 2.0 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|433591662|ref|YP_007281158.1| - 0.014 15.6 0.8 0.37 11.0 0.4 2.7 1 1 1 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|433591662|ref|YP_007281158.1| - 0.016 15.0 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|433591662|ref|YP_007281158.1| - 0.027 13.8 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|433591662|ref|YP_007281158.1| - 0.042 14.2 1.3 0.16 12.3 1.3 1.9 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|433591662|ref|YP_007281158.1| - 0.042 13.4 0.0 0.089 12.4 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|433591662|ref|YP_007281158.1| - 0.13 12.1 0.1 0.21 11.5 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|433591662|ref|YP_007281158.1| - 0.47 10.0 2.8 0.95 9.0 0.0 2.5 2 1 0 2 2 2 0 AAA domain ABC-3 PF00950.17 gi|433591663|ref|YP_007281159.1| - 5.1e-59 199.9 35.6 5.1e-59 199.9 35.6 1.5 2 0 0 2 2 2 1 ABC 3 transport family FecCD PF01032.18 gi|433591663|ref|YP_007281159.1| - 2.1e-05 23.7 36.3 2.1e-05 23.7 36.3 1.7 2 1 0 2 2 2 1 FecCD transport family DUF1189 PF06691.11 gi|433591663|ref|YP_007281159.1| - 9.3 5.7 10.6 21 4.6 10.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) DUF2070 PF09843.9 gi|433591664|ref|YP_007281160.1| - 0.019 13.3 2.5 0.023 13.0 2.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Cyt_bd_oxida_II PF02322.15 gi|433591664|ref|YP_007281160.1| - 0.031 13.6 9.4 0.084 12.2 9.7 1.5 1 1 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II DUF5336 PF17270.2 gi|433591664|ref|YP_007281160.1| - 1.6 8.3 8.1 0.049 13.3 1.0 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5336) ATP-grasp_5 PF13549.6 gi|433591666|ref|YP_007281162.1| - 5e-74 248.5 0.2 7.6e-74 247.9 0.2 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|433591666|ref|YP_007281162.1| - 3.2e-52 176.0 1.7 2.4e-51 173.2 0.2 2.6 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|433591666|ref|YP_007281162.1| - 6.2e-22 78.3 4.1 9.2e-22 77.7 0.2 3.0 4 0 0 4 4 4 1 CoA binding domain CoA_binding PF02629.19 gi|433591666|ref|YP_007281162.1| - 5.4e-10 39.8 0.3 1.8e-09 38.2 0.3 2.0 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|433591666|ref|YP_007281162.1| - 0.0001 21.9 0.0 0.00024 20.8 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain B12-binding PF02310.19 gi|433591666|ref|YP_007281162.1| - 0.03 14.4 0.3 0.12 12.4 0.1 2.2 2 0 0 2 2 2 0 B12 binding domain Lipase_GDSL_2 PF13472.6 gi|433591666|ref|YP_007281162.1| - 0.2 12.0 1.5 21 5.5 0.1 3.8 3 2 1 4 4 4 0 GDSL-like Lipase/Acylhydrolase family AAA_26 PF13500.6 gi|433591667|ref|YP_007281163.1| - 1.2e-31 110.1 0.0 2.5e-31 109.0 0.0 1.6 1 1 1 2 2 2 1 AAA domain DRTGG PF07085.12 gi|433591667|ref|YP_007281163.1| - 1.4e-28 98.7 0.2 4.6e-28 97.1 0.0 2.0 2 0 0 2 2 2 1 DRTGG domain CbiA PF01656.23 gi|433591667|ref|YP_007281163.1| - 0.0068 16.5 0.0 0.024 14.7 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GYD PF08734.11 gi|433591667|ref|YP_007281163.1| - 0.024 14.6 0.4 0.23 11.4 0.0 2.5 2 0 0 2 2 2 0 GYD domain Hpr_kinase_N PF02603.16 gi|433591667|ref|YP_007281163.1| - 0.085 12.9 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 HPr Serine kinase N terminus ECH_1 PF00378.20 gi|433591668|ref|YP_007281164.1| - 1.5e-43 148.9 0.0 1.8e-43 148.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|433591668|ref|YP_007281164.1| - 1.6e-22 80.5 0.3 1.3e-18 67.6 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase PRC PF05239.16 gi|433591669|ref|YP_007281165.1| - 1.3e-11 44.4 0.6 1.7e-11 44.0 0.6 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF2171 PF09939.9 gi|433591669|ref|YP_007281165.1| - 0.019 15.2 0.1 0.071 13.4 0.1 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) RcnB PF11776.8 gi|433591669|ref|YP_007281165.1| - 0.086 12.9 0.2 0.14 12.2 0.2 1.4 1 0 0 1 1 1 0 Nickel/cobalt transporter regulator TrkA_N PF02254.18 gi|433591670|ref|YP_007281166.1| - 2.9e-19 69.4 1.6 7.5e-19 68.1 0.9 2.2 2 0 0 2 2 1 1 TrkA-N domain DHH PF01368.20 gi|433591670|ref|YP_007281166.1| - 9.7e-13 48.2 0.7 1.8e-11 44.2 0.3 2.3 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.17 gi|433591670|ref|YP_007281166.1| - 2e-08 34.7 0.3 7.6e-08 32.8 0.1 2.1 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|433591670|ref|YP_007281166.1| - 7.6e-08 32.7 0.3 2.6e-07 31.0 0.1 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|433591670|ref|YP_007281166.1| - 3.4e-07 30.3 2.0 8e-07 29.1 2.0 1.6 1 0 0 1 1 1 1 NAD(P)H-binding ApbA PF02558.16 gi|433591670|ref|YP_007281166.1| - 7.1e-07 29.0 0.0 2.1e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DHHA1 PF02272.19 gi|433591670|ref|YP_007281166.1| - 4.9e-06 27.0 0.4 2.1e-05 25.0 0.0 2.3 2 1 1 3 3 2 1 DHHA1 domain NAD_binding_7 PF13241.6 gi|433591670|ref|YP_007281166.1| - 5.3e-05 23.6 1.8 0.00013 22.3 1.3 1.9 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|433591670|ref|YP_007281166.1| - 8.1e-05 22.8 0.0 0.00021 21.5 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|433591670|ref|YP_007281166.1| - 0.00035 20.2 0.1 0.00069 19.2 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain UDPG_MGDP_dh_N PF03721.14 gi|433591670|ref|YP_007281166.1| - 0.00046 19.8 0.0 0.0012 18.5 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.21 gi|433591670|ref|YP_007281166.1| - 0.00052 19.5 0.7 0.0008 18.9 0.1 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.20 gi|433591670|ref|YP_007281166.1| - 0.00055 20.0 0.0 0.0017 18.5 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|433591670|ref|YP_007281166.1| - 0.0022 17.3 0.0 0.0036 16.6 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|433591670|ref|YP_007281166.1| - 0.0022 18.0 0.0 0.0046 17.0 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF364 PF04016.12 gi|433591670|ref|YP_007281166.1| - 0.0035 16.9 0.1 0.011 15.3 0.0 1.8 2 0 0 2 2 2 1 Putative heavy-metal chelation 3HCDH_N PF02737.18 gi|433591670|ref|YP_007281166.1| - 0.0038 17.1 0.0 0.0095 15.8 0.0 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|433591670|ref|YP_007281166.1| - 0.0058 15.9 0.2 0.017 14.5 0.2 1.8 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|433591670|ref|YP_007281166.1| - 0.008 15.6 0.0 0.021 14.2 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 gi|433591670|ref|YP_007281166.1| - 0.026 14.0 0.3 0.13 11.7 0.0 2.2 2 1 0 2 2 2 0 short chain dehydrogenase XdhC_C PF13478.6 gi|433591670|ref|YP_007281166.1| - 0.064 13.8 0.9 0.25 11.8 0.4 2.2 1 1 1 2 2 2 0 XdhC Rossmann domain adh_short_C2 PF13561.6 gi|433591670|ref|YP_007281166.1| - 0.084 12.4 0.3 0.084 12.4 0.3 2.3 3 0 0 3 3 3 0 Enoyl-(Acyl carrier protein) reductase DUF411 PF04214.13 gi|433591671|ref|YP_007281167.1| - 6.5e-29 99.7 0.1 6.7e-28 96.4 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF TAT_signal PF10518.9 gi|433591671|ref|YP_007281167.1| - 0.12 12.3 0.8 0.12 12.3 0.8 2.3 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence Lactamase_B_3 PF13483.6 gi|433591672|ref|YP_007281168.1| - 6.2e-27 94.5 0.4 7.5e-27 94.2 0.4 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|433591672|ref|YP_007281168.1| - 6e-08 32.4 3.8 1.2e-07 31.5 3.8 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF3659 PF12396.8 gi|433591672|ref|YP_007281168.1| - 0.24 11.3 1.1 0.33 10.9 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) DDE_3 PF13358.6 gi|433591674|ref|YP_007281170.1| - 1.3e-34 119.0 0.0 2.7e-34 118.0 0.0 1.6 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_33 PF13592.6 gi|433591674|ref|YP_007281170.1| - 4.7e-21 74.2 0.0 1.2e-20 72.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.6 gi|433591674|ref|YP_007281170.1| - 1.1e-11 45.1 0.2 3.7e-11 43.5 0.2 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|433591674|ref|YP_007281170.1| - 1.3e-10 41.2 0.4 3.8e-10 39.7 0.4 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|433591674|ref|YP_007281170.1| - 4.1e-10 39.5 0.5 7.9e-10 38.6 0.3 1.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433591674|ref|YP_007281170.1| - 0.00011 21.9 0.0 0.00024 20.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain DDE_Tnp_ISAZ013 PF07592.11 gi|433591674|ref|YP_007281170.1| - 0.00044 19.3 0.0 0.022 13.7 0.1 2.2 2 0 0 2 2 2 1 Rhodopirellula transposase DDE domain HTH_36 PF13730.6 gi|433591674|ref|YP_007281170.1| - 0.022 14.7 0.0 0.085 12.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.16 gi|433591674|ref|YP_007281170.1| - 0.024 14.7 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 Transposase Sigma70_ECF PF07638.11 gi|433591674|ref|YP_007281170.1| - 0.026 14.4 0.1 0.067 13.1 0.0 1.7 2 0 0 2 2 2 0 ECF sigma factor HTH_Tnp_Tc3_2 PF01498.18 gi|433591674|ref|YP_007281170.1| - 0.042 14.1 0.0 0.13 12.5 0.0 1.8 2 0 0 2 2 2 0 Transposase SMC_ScpB PF04079.16 gi|433591674|ref|YP_007281170.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB HTH_3 PF01381.22 gi|433591674|ref|YP_007281170.1| - 0.43 10.7 1.3 3.9 7.6 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix Cytochrom_D1 PF02239.16 gi|433591675|ref|YP_007281171.1| - 5.9e-76 255.4 0.0 1e-75 254.6 0.0 1.4 1 0 0 1 1 1 1 Cytochrome D1 heme domain TAT_signal PF10518.9 gi|433591675|ref|YP_007281171.1| - 7.6e-07 28.7 2.1 7.6e-07 28.7 2.1 1.7 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|433591675|ref|YP_007281171.1| - 3.1e-06 27.2 0.5 7.4e-06 26.0 0.3 1.8 1 1 0 1 1 1 1 Cupredoxin-like domain RPE65 PF03055.15 gi|433591675|ref|YP_007281171.1| - 0.00075 18.8 0.1 0.056 12.6 0.0 3.0 2 1 1 3 3 3 1 Retinal pigment epithelial membrane protein Glu_cyclase_2 PF05096.12 gi|433591675|ref|YP_007281171.1| - 0.016 14.6 0.1 0.067 12.6 0.1 2.0 1 1 1 2 2 2 0 Glutamine cyclotransferase fn3_5 PF06280.12 gi|433591675|ref|YP_007281171.1| - 0.065 13.9 0.0 0.17 12.6 0.0 1.7 1 0 0 1 1 1 0 Fn3-like domain INCENP_ARK-bind PF03941.15 gi|433591675|ref|YP_007281171.1| - 0.41 10.6 3.6 1.2 9.1 3.6 1.7 1 0 0 1 1 1 0 Inner centromere protein, ARK binding region Lactonase PF10282.9 gi|433591676|ref|YP_007281172.1| - 3.9e-08 32.9 0.0 0.00089 18.6 0.0 3.2 3 0 0 3 3 3 2 Lactonase, 7-bladed beta-propeller Cytochrom_D1 PF02239.16 gi|433591676|ref|YP_007281172.1| - 4.7e-08 32.0 0.9 0.003 16.1 0.0 3.0 2 2 2 4 4 4 3 Cytochrome D1 heme domain Cytochrom_D1 PF02239.16 gi|433591677|ref|YP_007281173.1| - 2.3e-05 23.1 0.0 0.00017 20.2 0.0 2.4 2 1 1 3 3 3 2 Cytochrome D1 heme domain Lactonase PF10282.9 gi|433591677|ref|YP_007281173.1| - 0.0027 17.0 0.0 0.081 12.2 0.0 2.7 2 1 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Radical_SAM PF04055.21 gi|433591678|ref|YP_007281174.1| - 7.9e-23 81.7 0.0 2e-22 80.4 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|433591678|ref|YP_007281174.1| - 2.5e-10 40.8 0.0 4.4e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|433591678|ref|YP_007281174.1| - 1e-05 25.7 0.0 1.7e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|433591678|ref|YP_007281174.1| - 0.00021 21.8 0.0 0.00052 20.5 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain DUF1906 PF08924.11 gi|433591678|ref|YP_007281174.1| - 0.027 14.6 0.1 0.045 13.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) GlutR_N PF05201.15 gi|433591679|ref|YP_007281175.1| - 2.2e-26 92.4 0.1 4.8e-26 91.3 0.0 1.6 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|433591679|ref|YP_007281175.1| - 6.4e-18 65.0 0.9 1.3e-17 64.0 0.9 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Shikimate_DH PF01488.20 gi|433591679|ref|YP_007281175.1| - 5.8e-13 49.1 0.0 1.1e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Pyr_redox_2 PF07992.14 gi|433591679|ref|YP_007281175.1| - 0.032 13.5 1.6 0.14 11.4 0.2 2.1 1 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|433591679|ref|YP_007281175.1| - 0.034 14.7 0.0 0.079 13.5 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ARGLU PF15346.6 gi|433591679|ref|YP_007281175.1| - 0.042 13.7 2.2 0.074 12.9 2.2 1.3 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 NAD_binding_2 PF03446.15 gi|433591679|ref|YP_007281175.1| - 0.096 12.8 0.0 0.44 10.7 0.0 2.0 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase CdiI_2 PF18593.1 gi|433591679|ref|YP_007281175.1| - 0.24 12.1 0.3 0.76 10.5 0.2 1.9 2 0 0 2 2 2 0 CdiI immunity protein Fer4_11 PF13247.6 gi|433591680|ref|YP_007281176.1| - 1.6e-32 111.6 5.5 1.6e-32 111.6 5.5 1.5 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|433591680|ref|YP_007281176.1| - 2e-09 37.9 12.8 8.8e-06 26.2 6.5 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433591680|ref|YP_007281176.1| - 2e-07 31.0 17.3 0.00046 20.2 8.7 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|433591680|ref|YP_007281176.1| - 6.3e-06 26.0 21.4 0.0078 16.3 1.6 4.1 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|433591680|ref|YP_007281176.1| - 6.4e-06 26.2 15.1 0.0015 18.6 6.5 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|433591680|ref|YP_007281176.1| - 3.6e-05 23.8 14.5 0.015 15.4 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|433591680|ref|YP_007281176.1| - 0.00089 19.2 22.8 0.064 13.4 1.5 3.7 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|433591680|ref|YP_007281176.1| - 0.0026 18.3 18.4 0.059 13.9 0.4 3.5 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|433591680|ref|YP_007281176.1| - 0.048 14.6 19.5 2 9.4 3.4 3.8 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|433591680|ref|YP_007281176.1| - 0.17 12.4 17.7 0.47 10.9 1.5 3.6 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|433591680|ref|YP_007281176.1| - 0.29 11.7 27.1 0.74 10.5 2.0 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|433591680|ref|YP_007281176.1| - 0.52 11.4 31.1 0.55 11.3 5.9 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4 PF00037.27 gi|433591680|ref|YP_007281176.1| - 0.9 9.5 25.1 0.054 13.3 2.1 4.2 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|433591680|ref|YP_007281176.1| - 1.2 9.8 11.0 1.6 9.4 0.4 3.5 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|433591680|ref|YP_007281176.1| - 5.3 7.9 8.9 3.2 8.6 0.1 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain Nitrate_red_del PF02613.15 gi|433591681|ref|YP_007281177.1| - 3.9e-20 72.3 1.3 5.5e-20 71.8 1.3 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit EB_dh PF09459.10 gi|433591682|ref|YP_007281178.1| - 1.8e-25 90.4 7.8 3.4e-25 89.4 7.8 1.5 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Pilosulin PF17499.2 gi|433591682|ref|YP_007281178.1| - 0.2 11.8 1.0 0.34 11.1 0.2 1.9 2 0 0 2 2 2 0 Ant venom peptides HEAT_2 PF13646.6 gi|433591683|ref|YP_007281179.1| - 1.3e-26 92.7 19.2 9.2e-13 48.4 4.2 4.0 2 1 2 4 4 4 3 HEAT repeats HEAT PF02985.22 gi|433591683|ref|YP_007281179.1| - 5.9e-13 47.9 8.8 0.076 13.3 0.1 6.4 6 0 0 6 6 6 5 HEAT repeat Cnd1 PF12717.7 gi|433591683|ref|YP_007281179.1| - 2.4e-08 34.2 0.0 0.018 15.1 0.0 3.9 2 1 2 4 4 4 2 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|433591683|ref|YP_007281179.1| - 8.3e-05 23.0 10.8 3 8.4 0.2 5.2 4 3 1 5 5 5 4 HEAT-like repeat Adaptin_N PF01602.20 gi|433591683|ref|YP_007281179.1| - 0.013 14.1 0.0 6.8 5.1 0.0 2.8 1 1 0 3 3 3 0 Adaptin N terminal region GP24_25 PF17388.2 gi|433591683|ref|YP_007281179.1| - 0.016 15.1 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 Tail assembly gene products 24 & 25 HEAT_PBS PF03130.16 gi|433591683|ref|YP_007281179.1| - 0.035 14.8 26.8 0.46 11.3 0.1 6.0 7 0 0 7 7 7 0 PBS lyase HEAT-like repeat DUF3156 PF11354.8 gi|433591683|ref|YP_007281179.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3156) Ins_allergen_rp PF06757.13 gi|433591684|ref|YP_007281180.1| - 0.027 14.4 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification HBS1_N PF08938.10 gi|433591684|ref|YP_007281180.1| - 0.053 13.8 0.1 0.17 12.2 0.1 2.0 1 0 0 1 1 1 0 HBS1 N-terminus ParA PF10609.9 gi|433591685|ref|YP_007281181.1| - 4e-65 219.7 0.0 5.4e-65 219.3 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase DUF2249 PF10006.9 gi|433591685|ref|YP_007281181.1| - 1.4e-17 63.3 1.0 3.4e-17 62.1 0.5 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) FeS_assembly_P PF01883.19 gi|433591685|ref|YP_007281181.1| - 3e-11 43.3 1.0 1.2e-10 41.4 1.0 2.1 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein CbiA PF01656.23 gi|433591685|ref|YP_007281181.1| - 4.6e-10 39.7 0.0 6e-10 39.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|433591685|ref|YP_007281181.1| - 4.6e-07 29.9 0.0 2e-06 27.8 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.6 gi|433591685|ref|YP_007281181.1| - 0.00052 19.9 0.0 0.48 10.2 0.1 2.2 2 0 0 2 2 2 2 AAA domain VirC1 PF07015.11 gi|433591685|ref|YP_007281181.1| - 0.0013 18.1 0.0 0.0023 17.3 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 gi|433591685|ref|YP_007281181.1| - 0.0028 16.9 0.0 0.013 14.7 0.1 2.1 3 0 0 3 3 3 1 Anion-transporting ATPase MipZ PF09140.11 gi|433591685|ref|YP_007281181.1| - 0.067 12.5 0.0 0.097 11.9 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ MobB PF03205.14 gi|433591686|ref|YP_007281182.1| - 5.9e-24 84.5 0.0 2.5e-22 79.2 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|433591686|ref|YP_007281182.1| - 0.0053 16.7 0.0 0.01 15.7 0.0 1.5 1 1 0 1 1 1 1 RsgA GTPase GTP_EFTU PF00009.27 gi|433591686|ref|YP_007281182.1| - 0.0061 16.1 0.1 0.009 15.6 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|433591686|ref|YP_007281182.1| - 0.0087 16.5 0.1 0.025 15.0 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|433591686|ref|YP_007281182.1| - 0.01 16.0 0.0 0.019 15.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|433591686|ref|YP_007281182.1| - 0.013 14.9 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit MMR_HSR1 PF01926.23 gi|433591686|ref|YP_007281182.1| - 0.031 14.4 0.0 0.077 13.1 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Roc PF08477.13 gi|433591686|ref|YP_007281182.1| - 0.034 14.4 0.0 0.05 13.8 0.0 1.2 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|433591686|ref|YP_007281182.1| - 0.04 14.5 0.0 0.41 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|433591686|ref|YP_007281182.1| - 0.053 13.3 0.0 0.08 12.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family cobW PF02492.19 gi|433591686|ref|YP_007281182.1| - 0.075 12.6 0.0 0.16 11.6 0.0 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 gi|433591686|ref|YP_007281182.1| - 0.093 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation SBP_bac_11 PF13531.6 gi|433591687|ref|YP_007281183.1| - 2.2e-23 83.2 2.7 2.6e-23 83.0 2.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|433591687|ref|YP_007281183.1| - 0.00034 20.7 0.7 0.0029 17.6 0.0 2.3 2 1 1 3 3 3 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|433591688|ref|YP_007281184.1| - 2.4e-15 56.7 18.6 2.4e-15 56.7 18.6 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_10 PF04967.12 gi|433591689|ref|YP_007281185.1| - 1.4e-18 66.4 0.2 2.3e-18 65.7 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|433591689|ref|YP_007281185.1| - 3.2e-11 43.4 0.3 6.3e-11 42.4 0.3 1.5 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|433591689|ref|YP_007281185.1| - 0.00026 20.8 0.2 0.00084 19.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|433591689|ref|YP_007281185.1| - 0.00067 19.2 0.1 0.0013 18.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433591689|ref|YP_007281185.1| - 0.0089 15.8 0.1 0.022 14.6 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|433591689|ref|YP_007281185.1| - 0.018 14.6 0.2 0.041 13.4 0.2 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 UPF0122 PF04297.14 gi|433591689|ref|YP_007281185.1| - 0.03 14.5 0.0 0.054 13.7 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_psq PF05225.16 gi|433591689|ref|YP_007281185.1| - 0.074 12.8 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain GntR PF00392.21 gi|433591689|ref|YP_007281185.1| - 0.12 12.1 0.3 0.23 11.1 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Phage_CI_repr PF07022.13 gi|433591689|ref|YP_007281185.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_3 PF01381.22 gi|433591689|ref|YP_007281185.1| - 0.14 12.2 0.0 0.42 10.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix ECH_1 PF00378.20 gi|433591690|ref|YP_007281186.1| - 5e-49 166.9 0.1 5.6e-49 166.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|433591690|ref|YP_007281186.1| - 8.1e-27 94.6 0.6 4.1e-26 92.3 0.6 1.8 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Fmp27_GFWDK PF10347.9 gi|433591692|ref|YP_007281188.1| - 0.14 12.3 0.1 0.21 11.7 0.1 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain PyrI PF01948.18 gi|433591695|ref|YP_007281191.1| - 3.5e-33 113.7 0.3 4.4e-33 113.4 0.3 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|433591695|ref|YP_007281191.1| - 2.3e-12 46.6 0.2 4.7e-12 45.6 0.2 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|433591696|ref|YP_007281192.1| - 5.4e-44 149.8 0.0 1.5e-43 148.4 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|433591696|ref|YP_007281192.1| - 2.7e-29 102.3 0.0 3.8e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATPase PF06745.13 gi|433591697|ref|YP_007281193.1| - 1.1e-06 28.2 0.0 0.00025 20.5 0.0 2.1 1 1 1 2 2 2 2 KaiC FKBP_C PF00254.28 gi|433591698|ref|YP_007281194.1| - 3.7e-07 30.4 0.3 3.7e-07 30.4 0.3 2.1 2 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.14 gi|433591698|ref|YP_007281194.1| - 0.084 12.6 0.2 0.24 11.1 0.2 1.8 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) CYTH PF01928.21 gi|433591699|ref|YP_007281195.1| - 7.7e-42 143.2 6.2 8.6e-42 143.1 6.2 1.0 1 0 0 1 1 1 1 CYTH domain PrcB_C PF14343.6 gi|433591699|ref|YP_007281195.1| - 0.013 15.6 0.4 7.6 6.8 0.0 2.4 2 0 0 2 2 2 0 PrcB C-terminal Phage_tail_2 PF06199.11 gi|433591699|ref|YP_007281195.1| - 0.017 15.2 0.6 0.032 14.3 0.6 1.5 1 1 0 1 1 1 0 Phage tail tube protein AdoMet_Synthase PF01941.19 gi|433591700|ref|YP_007281196.1| - 6.3e-173 575.1 6.0 7.1e-173 574.9 6.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|433591700|ref|YP_007281196.1| - 0.0083 16.8 0.2 0.035 14.8 0.0 2.2 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, N-terminal domain Qn_am_d_aII PF14930.6 gi|433591701|ref|YP_007281197.1| - 0.085 13.2 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain II MFS_1 PF07690.16 gi|433591702|ref|YP_007281198.1| - 9e-46 156.4 50.8 7.3e-26 90.9 25.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|433591702|ref|YP_007281198.1| - 1.6e-05 23.8 14.9 3.5e-05 22.7 3.8 2.1 2 0 0 2 2 2 2 LacY proton/sugar symporter MFS_1_like PF12832.7 gi|433591702|ref|YP_007281198.1| - 0.001 18.1 12.5 0.19 10.6 7.2 2.4 2 0 0 2 2 2 2 MFS_1 like family OATP PF03137.20 gi|433591702|ref|YP_007281198.1| - 0.022 13.0 1.8 0.044 12.1 1.8 1.5 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DUF2427 PF10348.9 gi|433591702|ref|YP_007281198.1| - 0.44 10.4 4.6 0.35 10.7 0.8 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF2427) ThiI PF02568.14 gi|433591703|ref|YP_007281199.1| - 9e-41 139.6 0.0 1.8e-40 138.7 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|433591703|ref|YP_007281199.1| - 5.3e-18 65.5 0.0 9.8e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|433591703|ref|YP_007281199.1| - 5.1e-05 22.9 0.0 0.092 12.2 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|433591703|ref|YP_007281199.1| - 0.047 12.5 0.0 0.065 12.0 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|433591703|ref|YP_007281199.1| - 0.14 11.9 0.1 2.2 8.0 0.1 2.6 1 1 0 1 1 1 0 PP-loop family PALP PF00291.25 gi|433591706|ref|YP_007281202.1| - 2.9e-62 210.7 0.3 3.8e-62 210.4 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|433591706|ref|YP_007281202.1| - 0.0032 17.4 0.1 0.009 16.0 0.1 1.8 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Aminotran_3 PF00202.21 gi|433591707|ref|YP_007281203.1| - 5.5e-67 226.2 0.0 6.8e-67 225.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III zf-C2H2_8 PF15909.5 gi|433591708|ref|YP_007281204.1| - 0.075 13.3 0.0 0.19 12.0 0.0 1.7 2 0 0 2 2 2 0 C2H2-type zinc ribbon Aldedh PF00171.22 gi|433591709|ref|YP_007281205.1| - 5.9e-171 569.0 0.0 7e-171 568.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|433591709|ref|YP_007281205.1| - 0.19 11.1 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) Thioredoxin PF00085.20 gi|433591710|ref|YP_007281206.1| - 3.5e-08 33.4 0.0 4.4e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.6 gi|433591710|ref|YP_007281206.1| - 0.00083 19.5 0.0 0.0012 19.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|433591710|ref|YP_007281206.1| - 0.0015 18.3 0.1 0.0034 17.2 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.21 gi|433591710|ref|YP_007281206.1| - 0.086 12.8 0.0 0.26 11.2 0.0 1.7 1 1 1 2 2 2 0 AhpC/TSA family Thioredoxin_2 PF13098.6 gi|433591710|ref|YP_007281206.1| - 0.14 12.7 0.1 0.42 11.1 0.0 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|433591710|ref|YP_007281206.1| - 0.14 12.5 0.0 10 6.5 0.0 2.2 1 1 1 2 2 2 0 Thioredoxin-like Metallophos_2 PF12850.7 gi|433591711|ref|YP_007281207.1| - 9.9e-14 51.9 0.0 1.7e-05 25.1 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|433591711|ref|YP_007281207.1| - 5.9e-10 40.0 0.2 2.6e-08 34.6 0.1 2.1 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Thioredox_DsbH PF03190.15 gi|433591712|ref|YP_007281208.1| - 1.7e-73 245.9 0.1 3.1e-73 245.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|433591712|ref|YP_007281208.1| - 8.9e-11 41.8 0.0 2.2e-10 40.6 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|433591712|ref|YP_007281208.1| - 1.4e-08 34.4 0.3 0.003 16.9 0.0 2.5 2 1 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.13 gi|433591712|ref|YP_007281208.1| - 0.013 14.6 0.1 0.34 9.9 0.0 2.8 2 1 0 3 3 3 0 Glycosyl Hydrolase Family 88 CHRD PF07452.12 gi|433591713|ref|YP_007281209.1| - 7e-19 68.9 0.1 1e-18 68.4 0.1 1.2 1 0 0 1 1 1 1 CHRD domain TAT_signal PF10518.9 gi|433591713|ref|YP_007281209.1| - 0.52 10.2 4.1 1.1 9.2 4.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Aconitase PF00330.20 gi|433591714|ref|YP_007281210.1| - 5.2e-165 549.9 0.0 6.8e-165 549.5 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|433591714|ref|YP_007281210.1| - 3.4e-41 140.6 0.0 5.7e-41 139.9 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain DHFR_1 PF00186.19 gi|433591716|ref|YP_007281212.1| - 4.8e-51 172.6 0.0 5.4e-51 172.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase ArAE_2 PF10334.9 gi|433591716|ref|YP_007281212.1| - 0.19 11.6 0.0 0.24 11.2 0.0 1.1 1 0 0 1 1 1 0 Aromatic acid exporter family member 2 Thymidylat_synt PF00303.19 gi|433591717|ref|YP_007281213.1| - 1.2e-95 319.7 0.0 1.5e-95 319.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase GARS_A PF01071.19 gi|433591719|ref|YP_007281215.1| - 7.5e-53 179.2 0.0 1.5e-52 178.2 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|433591719|ref|YP_007281215.1| - 4.3e-22 78.7 0.1 9.6e-22 77.6 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|433591719|ref|YP_007281215.1| - 5.9e-12 45.7 0.4 1.6e-11 44.3 0.4 1.8 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|433591719|ref|YP_007281215.1| - 0.0019 18.3 0.0 0.0047 17.0 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|433591719|ref|YP_007281215.1| - 0.017 14.4 0.0 0.064 12.5 0.0 1.8 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|433591719|ref|YP_007281215.1| - 0.046 13.2 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain PIN PF01850.21 gi|433591720|ref|YP_007281216.1| - 1e-15 58.3 0.5 1.2e-15 58.1 0.5 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|433591720|ref|YP_007281216.1| - 0.0006 20.6 0.1 0.00066 20.4 0.1 1.2 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|433591721|ref|YP_007281217.1| - 6e-08 32.4 0.1 8.9e-08 31.9 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|433591721|ref|YP_007281217.1| - 5.1e-06 26.9 0.0 6e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF4010 PF13194.6 gi|433591722|ref|YP_007281218.1| - 9.2e-51 172.5 30.7 9.2e-51 172.5 30.7 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|433591722|ref|YP_007281218.1| - 2.2e-23 82.9 12.0 2.2e-23 82.9 12.0 3.6 2 1 1 3 3 3 1 MgtC family COX8 PF02285.15 gi|433591722|ref|YP_007281218.1| - 0.03 14.2 1.3 0.59 10.1 0.1 3.4 2 0 0 2 2 2 0 Cytochrome oxidase c subunit VIII PadR PF03551.14 gi|433591723|ref|YP_007281219.1| - 2.9e-18 65.6 1.9 3.5e-18 65.3 1.9 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|433591723|ref|YP_007281219.1| - 0.0042 17.0 0.0 0.006 16.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|433591723|ref|YP_007281219.1| - 0.0043 16.8 0.0 0.0065 16.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.6 gi|433591723|ref|YP_007281219.1| - 0.0068 16.9 0.2 0.0088 16.5 0.2 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|433591723|ref|YP_007281219.1| - 0.033 14.1 0.6 2.2 8.2 0.1 2.4 3 0 0 3 3 3 0 MarR family DUF4364 PF14277.6 gi|433591723|ref|YP_007281219.1| - 0.09 12.5 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|433591723|ref|YP_007281219.1| - 0.094 12.9 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2172 PF09940.9 gi|433591724|ref|YP_007281220.1| - 0.031 14.7 0.1 0.033 14.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2172) CarboxypepD_reg PF13620.6 gi|433591725|ref|YP_007281221.1| - 0.0019 18.4 8.7 0.016 15.5 0.5 3.5 2 2 1 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4198 PF10670.9 gi|433591725|ref|YP_007281221.1| - 0.0087 16.5 1.8 1.9 8.8 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4198) EMP24_GP25L PF01105.24 gi|433591725|ref|YP_007281221.1| - 0.16 11.9 0.1 0.24 11.4 0.1 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD CarbopepD_reg_2 PF13715.6 gi|433591725|ref|YP_007281221.1| - 0.35 10.9 6.3 2 8.5 0.0 3.3 2 2 2 4 4 4 0 CarboxypepD_reg-like domain TAT_signal PF10518.9 gi|433591725|ref|YP_007281221.1| - 0.48 10.4 2.5 0.85 9.6 2.5 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HypA PF01155.19 gi|433591726|ref|YP_007281222.1| - 0.007 16.4 0.9 0.018 15.1 0.7 1.8 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|433591726|ref|YP_007281222.1| - 0.026 14.5 0.3 0.047 13.7 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.7 gi|433591726|ref|YP_007281222.1| - 0.03 14.7 1.9 0.85 10.1 0.1 2.9 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.12 gi|433591726|ref|YP_007281222.1| - 0.052 13.1 2.0 0.15 11.6 2.0 1.9 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.6 gi|433591726|ref|YP_007281222.1| - 0.11 12.5 0.2 0.22 11.6 0.2 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF2072 PF09845.9 gi|433591726|ref|YP_007281222.1| - 0.17 12.1 0.3 0.34 11.2 0.1 1.5 2 0 0 2 2 2 0 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|433591726|ref|YP_007281222.1| - 0.24 11.5 1.9 0.75 10.0 1.9 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|433591726|ref|YP_007281222.1| - 1.9 8.5 6.3 5.7 7.0 0.2 2.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|433591726|ref|YP_007281222.1| - 5.9 7.1 6.1 1.2 9.3 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OPT PF03169.15 gi|433591727|ref|YP_007281223.1| - 7.3e-119 398.1 43.5 1.1e-118 397.6 43.5 1.2 1 0 0 1 1 1 1 OPT oligopeptide transporter protein PqqD PF05402.12 gi|433591728|ref|YP_007281224.1| - 9.5e-13 48.2 0.0 1.3e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) HTH_47 PF16221.5 gi|433591728|ref|YP_007281224.1| - 0.056 13.0 0.0 0.1 12.2 0.0 1.6 1 1 0 1 1 1 0 winged helix-turn-helix THF_DHG_CYH_C PF02882.19 gi|433591729|ref|YP_007281225.1| - 5.2e-67 224.1 0.7 7e-67 223.7 0.7 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|433591729|ref|YP_007281225.1| - 5.9e-38 129.7 0.1 9.3e-38 129.1 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Abhydrolase_1 PF00561.20 gi|433591730|ref|YP_007281226.1| - 1.3e-23 84.0 0.0 1.6e-14 54.2 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433591730|ref|YP_007281226.1| - 2.9e-21 77.1 3.6 3.4e-21 76.9 3.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433591730|ref|YP_007281226.1| - 5.5e-15 55.3 0.0 1.4e-14 53.9 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|433591730|ref|YP_007281226.1| - 4e-11 42.1 0.0 5.3e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Ndr family Peptidase_S9 PF00326.21 gi|433591730|ref|YP_007281226.1| - 3e-06 26.9 0.0 0.00053 19.5 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_4 PF08386.10 gi|433591730|ref|YP_007281226.1| - 6.2e-05 23.1 0.0 0.0001 22.4 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.16 gi|433591730|ref|YP_007281226.1| - 9.1e-05 22.4 0.0 0.0098 15.7 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase DLH PF01738.18 gi|433591730|ref|YP_007281226.1| - 0.00032 20.3 0.0 0.0068 16.0 0.0 2.2 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.7 gi|433591730|ref|YP_007281226.1| - 0.002 17.9 0.0 0.018 14.8 0.0 2.1 2 0 0 2 2 2 1 Alpha/beta hydrolase family Esterase PF00756.20 gi|433591730|ref|YP_007281226.1| - 0.0049 16.5 0.1 0.012 15.3 0.0 1.5 1 1 0 1 1 1 1 Putative esterase Thioesterase PF00975.20 gi|433591730|ref|YP_007281226.1| - 0.07 13.2 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain FSH1 PF03959.13 gi|433591730|ref|YP_007281226.1| - 0.095 12.4 0.0 1.9 8.1 0.0 2.2 2 0 0 2 2 2 0 Serine hydrolase (FSH1) SHMT PF00464.19 gi|433591731|ref|YP_007281227.1| - 2.5e-156 520.3 0.0 3e-156 520.0 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|433591731|ref|YP_007281227.1| - 4.4e-08 32.8 0.0 0.0019 17.5 0.8 2.3 1 1 1 2 2 2 2 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|433591731|ref|YP_007281227.1| - 3.4e-07 29.8 0.0 1.3e-06 27.8 0.0 1.9 1 1 1 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|433591731|ref|YP_007281227.1| - 0.02 14.2 0.6 0.031 13.6 0.6 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family CHAT PF12770.7 gi|433591732|ref|YP_007281228.1| - 0.2 11.0 0.0 0.34 10.3 0.0 1.4 1 0 0 1 1 1 0 CHAT domain DUF4443 PF14544.6 gi|433591734|ref|YP_007281230.1| - 0.18 12.1 0.9 1 9.6 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4443) RNase_P_p30 PF01876.16 gi|433591735|ref|YP_007281231.1| - 5.3e-43 147.0 0.0 6.3e-43 146.7 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 Methyltransf_25 PF13649.6 gi|433591736|ref|YP_007281232.1| - 3.1e-17 63.1 0.1 5.9e-17 62.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433591736|ref|YP_007281232.1| - 7.4e-14 51.8 0.0 1.1e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433591736|ref|YP_007281232.1| - 3e-12 47.0 0.3 1e-11 45.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433591736|ref|YP_007281232.1| - 4.4e-10 39.3 0.0 7.9e-10 38.5 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|433591736|ref|YP_007281232.1| - 1.5e-09 38.5 0.0 2.6e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433591736|ref|YP_007281232.1| - 1.7e-06 28.0 0.0 4.6e-06 26.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|433591736|ref|YP_007281232.1| - 1.3e-05 24.8 0.0 1.9e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|433591736|ref|YP_007281232.1| - 0.019 14.4 0.2 0.025 14.0 0.2 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) tRNA_U5-meth_tr PF05958.11 gi|433591736|ref|YP_007281232.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DREV PF05219.12 gi|433591736|ref|YP_007281232.1| - 0.15 11.2 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase RNase_P_Rpp14 PF01900.19 gi|433591737|ref|YP_007281233.1| - 4.7e-19 68.5 0.0 5.9e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.26 gi|433591738|ref|YP_007281234.1| - 2.7e-56 190.1 0.0 3.4e-56 189.8 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|433591738|ref|YP_007281234.1| - 8.5e-14 50.9 0.1 1.5e-13 50.1 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS PF01172.18 gi|433591739|ref|YP_007281235.1| - 1.8e-20 72.8 0.0 2.7e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|433591739|ref|YP_007281235.1| - 4.3e-18 65.4 0.0 9.8e-18 64.3 0.0 1.6 2 0 0 2 2 2 1 SBDS protein C-terminal domain RCDG1 PF15725.5 gi|433591739|ref|YP_007281235.1| - 0.036 14.5 0.1 0.081 13.4 0.1 1.6 1 0 0 1 1 1 0 Renal cancer differentiation gene 1 protein FUN14 PF04930.15 gi|433591740|ref|YP_007281236.1| - 5.7e-18 65.1 3.4 7.6e-18 64.7 3.4 1.2 1 0 0 1 1 1 1 FUN14 family ATPase_gene1 PF09527.10 gi|433591740|ref|YP_007281236.1| - 0.0031 17.6 5.6 0.071 13.3 1.4 2.5 2 1 0 2 2 2 2 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter DUF3482 PF11981.8 gi|433591740|ref|YP_007281236.1| - 3.6 6.9 4.4 0.93 8.8 1.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3482) Tmemb_14 PF03647.13 gi|433591740|ref|YP_007281236.1| - 5.5 7.8 9.9 1.5 9.6 2.7 2.2 1 1 1 2 2 2 0 Transmembrane proteins 14C GTP-bdg_N PF13167.6 gi|433591741|ref|YP_007281237.1| - 9.8e-24 83.9 0.0 2.7e-23 82.5 0.0 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|433591741|ref|YP_007281237.1| - 6.2e-18 64.9 0.0 1.5e-17 63.7 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|433591741|ref|YP_007281237.1| - 8.8e-16 58.3 9.7 2.1e-15 57.0 9.7 1.7 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP_EFTU PF00009.27 gi|433591741|ref|YP_007281237.1| - 3.1e-10 39.9 0.1 9.5e-10 38.3 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|433591741|ref|YP_007281237.1| - 7.9e-08 32.4 1.1 0.0017 18.3 0.2 2.4 1 1 1 2 2 2 2 RsgA GTPase cobW PF02492.19 gi|433591741|ref|YP_007281237.1| - 2.3e-07 30.5 0.6 3.6e-05 23.4 0.1 2.4 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1_Xtn PF16897.5 gi|433591741|ref|YP_007281237.1| - 1.4e-06 28.2 0.0 2.8e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|433591741|ref|YP_007281237.1| - 0.00025 20.6 0.4 0.36 10.4 0.1 2.8 4 0 0 4 4 4 2 Ferrous iron transport protein B Arf PF00025.21 gi|433591741|ref|YP_007281237.1| - 0.00066 19.2 0.2 0.36 10.3 0.1 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family AAA_18 PF13238.6 gi|433591741|ref|YP_007281237.1| - 0.0011 19.5 0.0 0.0053 17.3 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433591741|ref|YP_007281237.1| - 0.0041 17.5 1.2 0.0041 17.5 1.2 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|433591741|ref|YP_007281237.1| - 0.017 15.1 0.0 0.038 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|433591741|ref|YP_007281237.1| - 0.018 14.6 1.0 0.56 9.7 0.1 3.0 2 1 0 2 2 2 0 AAA domain MnmE_helical PF12631.7 gi|433591741|ref|YP_007281237.1| - 0.022 15.0 0.2 0.033 14.4 0.2 1.3 1 0 0 1 1 1 0 MnmE helical domain ABC_tran PF00005.27 gi|433591741|ref|YP_007281237.1| - 0.03 14.9 0.0 0.083 13.4 0.0 1.9 2 0 0 2 2 2 0 ABC transporter CbiA PF01656.23 gi|433591741|ref|YP_007281237.1| - 0.034 14.2 0.0 0.19 11.8 0.0 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain FlxA PF14282.6 gi|433591741|ref|YP_007281237.1| - 0.048 13.7 1.6 0.11 12.5 1.6 1.5 1 0 0 1 1 1 0 FlxA-like protein Roc PF08477.13 gi|433591741|ref|YP_007281237.1| - 0.048 13.9 0.0 0.88 9.8 0.0 2.4 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_23 PF13476.6 gi|433591741|ref|YP_007281237.1| - 0.084 13.4 1.8 15 6.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|433591741|ref|YP_007281237.1| - 0.1 12.3 0.0 6.3 6.5 0.1 2.5 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein MCU PF04678.13 gi|433591741|ref|YP_007281237.1| - 1.8 8.7 3.5 25 4.9 2.8 2.6 1 1 0 1 1 1 0 Mitochondrial calcium uniporter MEDS PF14417.6 gi|433591742|ref|YP_007281238.1| - 2.1e-40 138.2 1.1 2.1e-40 138.2 1.1 1.9 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|433591742|ref|YP_007281238.1| - 1.1e-08 35.6 0.0 2.5e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|433591742|ref|YP_007281238.1| - 4.4e-06 26.7 0.1 1.5e-05 25.0 0.0 1.9 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|433591742|ref|YP_007281238.1| - 0.00086 19.3 0.8 0.00086 19.3 0.8 2.3 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|433591742|ref|YP_007281238.1| - 0.0053 16.3 0.6 0.0097 15.5 0.6 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase ATPase PF06745.13 gi|433591742|ref|YP_007281238.1| - 0.11 11.8 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 KaiC Cas9-BH PF16593.5 gi|433591742|ref|YP_007281238.1| - 7.3 6.4 11.0 15 5.4 11.0 1.5 1 0 0 1 1 1 0 Bridge helix of CRISPR-associated endonuclease Cas9 Thiolase_N PF00108.23 gi|433591743|ref|YP_007281239.1| - 1.1e-58 198.7 0.0 1.5e-58 198.2 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|433591743|ref|YP_007281239.1| - 1.4e-06 27.9 0.5 4.6e-06 26.3 0.2 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain 5_3_exonuc_N PF02739.16 gi|433591743|ref|YP_007281239.1| - 0.0021 18.0 0.2 0.2 11.6 0.1 2.2 1 1 0 2 2 2 2 5'-3' exonuclease, N-terminal resolvase-like domain ketoacyl-synt PF00109.26 gi|433591743|ref|YP_007281239.1| - 0.0037 16.9 3.4 0.1 12.2 0.9 2.5 1 1 2 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain OB_aCoA_assoc PF01796.17 gi|433591744|ref|YP_007281240.1| - 2.2e-05 24.3 1.1 3.2e-05 23.8 1.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated TolB_N PF04052.13 gi|433591744|ref|YP_007281240.1| - 0.018 15.2 0.0 0.024 14.8 0.0 1.2 1 0 0 1 1 1 0 TolB amino-terminal domain DUF2150 PF09920.9 gi|433591745|ref|YP_007281241.1| - 0.029 14.4 0.1 0.04 13.9 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2150) Caudo_TAP PF02413.17 gi|433591745|ref|YP_007281241.1| - 0.14 12.3 0.5 0.23 11.6 0.5 1.3 1 0 0 1 1 1 0 Caudovirales tail fibre assembly protein, lambda gpK Ndc1_Nup PF09531.10 gi|433591745|ref|YP_007281241.1| - 0.23 10.1 0.2 0.36 9.5 0.2 1.3 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF883 PF05957.13 gi|433591745|ref|YP_007281241.1| - 2.3 8.9 12.0 2.5 8.8 1.7 3.2 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) RNase_H_2 PF13482.6 gi|433591746|ref|YP_007281242.1| - 5.5e-34 117.6 0.0 7.4e-34 117.1 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.20 gi|433591746|ref|YP_007281242.1| - 0.12 12.0 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 3'-5' exonuclease DNA_pol_B_exo2 PF10108.9 gi|433591746|ref|YP_007281242.1| - 0.16 11.7 0.0 0.5 10.0 0.0 1.8 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 4HBT_2 PF13279.6 gi|433591747|ref|YP_007281243.1| - 9.7e-16 58.4 0.0 1.2e-15 58.1 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|433591747|ref|YP_007281243.1| - 4.1e-15 55.9 0.1 5.4e-15 55.5 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|433591747|ref|YP_007281243.1| - 2.6e-11 43.3 0.0 3.8e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Acyl-ACP thioesterase HalOD1 PF18545.1 gi|433591748|ref|YP_007281244.1| - 1.9e-25 88.9 0.1 2.2e-25 88.7 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_10 PF04967.12 gi|433591751|ref|YP_007281247.1| - 4.6e-15 55.1 0.0 8.3e-15 54.3 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|433591751|ref|YP_007281247.1| - 6.4e-12 45.6 5.3 6.9e-12 45.5 4.5 1.4 1 1 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|433591751|ref|YP_007281247.1| - 3.9e-07 29.5 0.3 1e-06 28.1 0.3 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|433591751|ref|YP_007281247.1| - 0.00059 19.5 0.2 0.0081 15.8 0.2 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|433591751|ref|YP_007281247.1| - 0.00098 18.9 0.1 0.0024 17.7 0.1 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|433591751|ref|YP_007281247.1| - 0.002 17.9 0.0 0.005 16.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|433591751|ref|YP_007281247.1| - 0.0061 16.1 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TetR_N PF00440.23 gi|433591751|ref|YP_007281247.1| - 0.053 13.3 0.1 0.14 12.0 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_50 PF18024.1 gi|433591751|ref|YP_007281247.1| - 0.096 12.3 0.1 0.24 11.0 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|433591752|ref|YP_007281248.1| - 0.015 15.3 1.2 0.093 12.8 1.2 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain Na_H_Exchanger PF00999.21 gi|433591753|ref|YP_007281249.1| - 6.4e-39 133.8 27.5 7.9e-39 133.5 27.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TAT_signal PF10518.9 gi|433591754|ref|YP_007281250.1| - 0.00067 19.4 1.2 0.00067 19.4 1.2 2.2 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|433591754|ref|YP_007281250.1| - 0.35 10.3 2.4 0.68 9.3 2.4 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ThiS PF02597.20 gi|433591756|ref|YP_007281252.1| - 0.00034 21.2 0.0 0.0015 19.1 0.0 1.9 1 1 0 1 1 1 1 ThiS family Radical_SAM PF04055.21 gi|433591758|ref|YP_007281254.1| - 3e-20 73.3 0.0 7.3e-20 72.0 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|433591758|ref|YP_007281254.1| - 2.9e-10 40.6 0.0 6.6e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|433591758|ref|YP_007281254.1| - 2e-06 27.9 0.0 5.8e-06 26.4 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|433591758|ref|YP_007281254.1| - 1e-05 25.9 0.0 2.4e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain PaaB PF06243.11 gi|433591759|ref|YP_007281255.1| - 7.2e-09 35.8 0.1 9.7e-09 35.3 0.1 1.3 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.21 gi|433591760|ref|YP_007281256.1| - 5.2e-21 75.7 0.0 7.5e-21 75.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|433591760|ref|YP_007281256.1| - 0.00014 22.2 0.0 0.00024 21.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|433591760|ref|YP_007281256.1| - 0.008 16.3 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1906 PF08924.11 gi|433591760|ref|YP_007281256.1| - 0.091 12.9 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) CPSase_L_D2 PF02786.17 gi|433591761|ref|YP_007281257.1| - 3.9e-69 232.4 0.2 1.6e-68 230.3 0.1 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|433591761|ref|YP_007281257.1| - 3.7e-45 153.0 0.2 2e-44 150.6 0.2 2.2 3 0 0 3 3 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|433591761|ref|YP_007281257.1| - 3.2e-35 120.5 0.0 8.6e-35 119.1 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|433591761|ref|YP_007281257.1| - 2.9e-16 59.0 6.0 2.9e-16 59.0 6.0 2.3 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|433591761|ref|YP_007281257.1| - 8.6e-10 38.3 2.4 7.3e-05 22.5 0.3 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like Dala_Dala_lig_C PF07478.13 gi|433591761|ref|YP_007281257.1| - 3e-05 23.7 0.0 7.4e-05 22.4 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|433591761|ref|YP_007281257.1| - 5.1e-05 22.9 0.1 9.1e-05 22.1 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|433591761|ref|YP_007281257.1| - 0.00042 20.2 0.0 0.00086 19.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD_D23 PF16576.5 gi|433591761|ref|YP_007281257.1| - 0.00052 19.3 2.1 0.78 8.9 0.1 3.0 2 2 1 3 3 3 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|433591761|ref|YP_007281257.1| - 0.001 19.8 1.4 1.4 9.7 0.1 2.8 2 0 0 2 2 2 2 HlyD family secretion protein RnfC_N PF13375.6 gi|433591761|ref|YP_007281257.1| - 0.056 13.4 0.5 0.21 11.5 0.3 2.1 2 1 1 3 3 2 0 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.20 gi|433591761|ref|YP_007281257.1| - 0.2 11.4 2.2 1.1 9.0 0.1 2.7 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCV_H PF01597.19 gi|433591761|ref|YP_007281257.1| - 0.22 11.4 1.3 0.54 10.2 1.3 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein YqfD PF06898.11 gi|433591761|ref|YP_007281257.1| - 0.41 9.4 4.7 0.51 9.1 2.8 2.0 2 1 0 2 2 2 0 Putative stage IV sporulation protein YqfD Band_7 PF01145.25 gi|433591762|ref|YP_007281258.1| - 5e-37 127.6 2.7 5e-37 127.6 2.7 1.6 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|433591762|ref|YP_007281258.1| - 0.087 12.5 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 SPFH domain-Band 7 family OAD_gamma PF04277.13 gi|433591763|ref|YP_007281259.1| - 0.065 13.8 1.0 0.065 13.8 1.0 1.8 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Carboxyl_trans PF01039.22 gi|433591764|ref|YP_007281260.1| - 9.8e-196 651.2 0.0 1.1e-195 651.0 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|433591764|ref|YP_007281260.1| - 3.8e-05 23.3 0.0 9.1e-05 22.1 0.0 1.5 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) DDE_Tnp_1 PF01609.21 gi|433591765|ref|YP_007281261.1| - 4.4e-27 95.1 0.0 6.1e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433591765|ref|YP_007281261.1| - 0.0015 17.9 0.1 0.0022 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|433591765|ref|YP_007281261.1| - 0.11 10.7 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 adh_short_C2 PF13561.6 gi|433591766|ref|YP_007281262.1| - 2.2e-39 135.4 0.1 4.5e-39 134.4 0.1 1.4 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433591766|ref|YP_007281262.1| - 1.8e-35 122.2 0.0 2.1e-35 121.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|433591766|ref|YP_007281262.1| - 1.2e-07 31.4 0.0 2.8e-07 30.3 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|433591766|ref|YP_007281262.1| - 3.7e-05 23.7 0.1 5.2e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 KR domain GDP_Man_Dehyd PF16363.5 gi|433591766|ref|YP_007281262.1| - 0.0014 18.1 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|433591766|ref|YP_007281262.1| - 0.038 13.1 0.1 0.048 12.8 0.1 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain Response_reg PF00072.24 gi|433591767|ref|YP_007281263.1| - 2.9e-12 46.7 0.0 3.6e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain GDPD PF03009.17 gi|433591768|ref|YP_007281264.1| - 1.8e-25 90.1 0.1 4.5e-24 85.6 0.1 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family UPF0047 PF01894.17 gi|433591769|ref|YP_007281265.1| - 6.2e-35 119.8 0.0 7.6e-35 119.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 HEAT_2 PF13646.6 gi|433591770|ref|YP_007281266.1| - 3.2e-18 65.9 24.6 4.7e-10 39.7 6.2 3.9 1 1 2 4 4 4 4 HEAT repeats HEAT PF02985.22 gi|433591770|ref|YP_007281266.1| - 6.5e-10 38.4 13.9 0.085 13.2 0.2 6.5 6 0 0 6 6 6 3 HEAT repeat HEAT_EZ PF13513.6 gi|433591770|ref|YP_007281266.1| - 4.5e-09 36.6 29.2 6.7e-05 23.3 2.2 7.3 2 2 6 8 8 8 3 HEAT-like repeat Cnd1 PF12717.7 gi|433591770|ref|YP_007281266.1| - 3.8e-07 30.3 0.1 5.8e-05 23.2 0.0 2.9 2 1 2 4 4 4 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|433591770|ref|YP_007281266.1| - 3.4e-06 25.9 0.0 1.2e-05 24.1 0.0 1.8 2 0 0 2 2 2 1 Adaptin N terminal region Arm PF00514.23 gi|433591770|ref|YP_007281266.1| - 3.8e-05 23.6 13.6 0.38 10.9 0.2 6.4 7 0 0 7 7 7 2 Armadillo/beta-catenin-like repeat AnmK PF03702.14 gi|433591770|ref|YP_007281266.1| - 0.034 13.2 0.0 0.052 12.6 0.0 1.2 1 0 0 1 1 1 0 Anhydro-N-acetylmuramic acid kinase DUF5578 PF17741.1 gi|433591770|ref|YP_007281266.1| - 0.081 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5578) Cnd3 PF12719.7 gi|433591770|ref|YP_007281266.1| - 0.21 10.8 0.0 0.4 9.8 0.0 1.4 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain Cohesin_HEAT PF12765.7 gi|433591770|ref|YP_007281266.1| - 0.77 10.1 3.4 8.6 6.8 0.0 3.4 3 0 0 3 3 3 0 HEAT repeat associated with sister chromatid cohesion SpoVR PF04293.13 gi|433591771|ref|YP_007281267.1| - 2.3e-85 286.8 5.2 5.9e-63 213.0 0.2 3.1 3 0 0 3 3 3 3 SpoVR like protein LAGLIDADG_3 PF14528.6 gi|433591771|ref|YP_007281267.1| - 8.2e-19 67.7 0.2 2.6e-12 46.9 0.1 2.7 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|433591771|ref|YP_007281267.1| - 2.4e-09 37.2 0.0 7.5e-09 35.6 0.0 1.9 2 0 0 2 2 2 1 Intein splicing domain LacI PF00356.21 gi|433591771|ref|YP_007281267.1| - 0.00079 19.2 0.6 0.0024 17.6 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_Tnp_ISL3 PF13542.6 gi|433591771|ref|YP_007281267.1| - 0.07 12.5 0.1 0.29 10.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 TetR_N PF00440.23 gi|433591771|ref|YP_007281267.1| - 0.073 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family DUF444 PF04285.12 gi|433591772|ref|YP_007281268.1| - 1.6e-127 426.1 0.1 1.8e-127 426.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) Tautomerase_2 PF14552.6 gi|433591772|ref|YP_007281268.1| - 0.014 15.5 0.1 2.2 8.4 0.1 2.6 2 0 0 2 2 2 0 Tautomerase enzyme PrkA PF06798.12 gi|433591773|ref|YP_007281269.1| - 3.1e-53 181.0 1.2 1.2e-52 179.1 0.6 2.0 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|433591773|ref|YP_007281269.1| - 2.5e-12 46.4 0.0 0.00047 19.2 0.0 3.6 3 1 0 3 3 3 3 PrkA AAA domain PrkA PF06798.12 gi|433591774|ref|YP_007281270.1| - 1.5e-70 237.8 7.8 1.5e-70 237.8 7.8 2.1 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|433591774|ref|YP_007281270.1| - 5.5e-64 216.3 0.1 8.7e-64 215.7 0.1 1.3 1 0 0 1 1 1 1 PrkA AAA domain RasGAP_C PF03836.15 gi|433591774|ref|YP_007281270.1| - 0.0098 16.0 0.7 7 6.8 0.0 2.8 2 0 0 2 2 2 2 RasGAP C-terminus AAA_5 PF07728.14 gi|433591774|ref|YP_007281270.1| - 0.099 12.6 0.6 12 5.9 0.2 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) UPF0179 PF03684.13 gi|433591777|ref|YP_007281273.1| - 6.6e-48 162.2 0.0 7.4e-48 162.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|433591777|ref|YP_007281273.1| - 0.012 15.9 0.0 0.02 15.1 0.0 1.5 1 0 0 1 1 1 0 Transposase DDE domain HxlR PF01638.17 gi|433591778|ref|YP_007281274.1| - 6.5e-21 74.0 0.0 7.7e-21 73.7 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|433591778|ref|YP_007281274.1| - 8.1e-06 25.9 0.0 1.1e-05 25.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|433591778|ref|YP_007281274.1| - 5.3e-05 23.6 0.1 7.6e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|433591778|ref|YP_007281274.1| - 0.00015 21.5 0.0 0.0002 21.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433591778|ref|YP_007281274.1| - 0.0027 17.6 0.0 0.0038 17.1 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|433591778|ref|YP_007281274.1| - 0.003 17.4 0.0 0.0055 16.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Trp_repressor PF01371.19 gi|433591778|ref|YP_007281274.1| - 0.0053 16.9 0.0 0.0074 16.4 0.0 1.2 1 0 0 1 1 1 1 Trp repressor protein HTH_20 PF12840.7 gi|433591778|ref|YP_007281274.1| - 0.011 15.8 0.1 0.015 15.4 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|433591778|ref|YP_007281274.1| - 0.012 15.4 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|433591778|ref|YP_007281274.1| - 0.02 14.8 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family OGFr_N PF04664.13 gi|433591778|ref|YP_007281274.1| - 0.13 11.7 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Opioid growth factor receptor (OGFr) conserved region HTH_45 PF14947.6 gi|433591778|ref|YP_007281274.1| - 0.14 12.1 0.0 0.21 11.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Flavin_Reduct PF01613.18 gi|433591779|ref|YP_007281275.1| - 6.1e-24 84.8 0.6 8.6e-24 84.3 0.6 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF3523 PF12037.8 gi|433591779|ref|YP_007281275.1| - 0.17 11.2 0.3 0.22 10.9 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3523) Polyketide_cyc2 PF10604.9 gi|433591780|ref|YP_007281276.1| - 1e-09 38.8 1.6 1.4e-09 38.3 1.6 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|433591780|ref|YP_007281276.1| - 2.7e-05 24.4 0.2 4e-05 23.8 0.2 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF3931 PF13082.6 gi|433591780|ref|YP_007281276.1| - 0.24 11.6 0.0 0.41 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3931) ABC_tran PF00005.27 gi|433591781|ref|YP_007281277.1| - 7.3e-29 101.0 0.0 1e-28 100.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433591781|ref|YP_007281277.1| - 2.2e-14 54.0 0.3 7.1e-09 35.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|433591781|ref|YP_007281277.1| - 1.5e-10 41.6 0.0 5e-10 39.9 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|433591781|ref|YP_007281277.1| - 6e-05 22.9 0.0 0.00016 21.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|433591781|ref|YP_007281277.1| - 0.0048 17.4 0.2 0.012 16.2 0.2 1.6 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|433591781|ref|YP_007281277.1| - 0.0084 15.8 0.0 0.25 11.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|433591781|ref|YP_007281277.1| - 0.0094 16.2 0.2 0.035 14.4 0.2 1.9 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|433591781|ref|YP_007281277.1| - 0.02 14.8 1.1 0.29 11.0 0.1 2.7 2 1 1 3 3 3 0 NTPase SRP54 PF00448.22 gi|433591781|ref|YP_007281277.1| - 0.021 14.5 0.5 0.044 13.4 0.5 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|433591781|ref|YP_007281277.1| - 0.035 13.7 0.0 0.064 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|433591781|ref|YP_007281277.1| - 0.037 14.4 0.0 0.057 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|433591781|ref|YP_007281277.1| - 0.049 13.1 0.2 3.2 7.1 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|433591781|ref|YP_007281277.1| - 0.066 13.0 0.2 0.12 12.2 0.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|433591781|ref|YP_007281277.1| - 0.08 13.4 0.3 0.29 11.6 0.3 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|433591781|ref|YP_007281277.1| - 0.082 12.6 0.6 0.69 9.6 0.2 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|433591781|ref|YP_007281277.1| - 0.19 12.0 2.4 0.5 10.6 1.2 2.3 2 1 0 2 2 2 0 AAA domain Form_Nir_trans PF01226.17 gi|433591782|ref|YP_007281278.1| - 1.5e-44 152.1 13.3 1.8e-44 151.8 13.3 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.26 gi|433591782|ref|YP_007281278.1| - 4.5e-12 46.7 8.8 1.3e-07 32.2 0.0 3.7 3 1 0 3 3 3 2 Universal stress protein family PrgI PF12666.7 gi|433591782|ref|YP_007281278.1| - 8.8 7.1 10.7 1.2 9.9 0.1 3.0 2 1 1 3 3 3 0 PrgI family protein Aldo_ket_red PF00248.21 gi|433591783|ref|YP_007281279.1| - 1.9e-68 230.8 0.0 2.2e-68 230.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF2892 PF11127.8 gi|433591784|ref|YP_007281280.1| - 1.1e-14 54.2 3.7 1.3e-14 54.0 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF677 PF05055.12 gi|433591784|ref|YP_007281280.1| - 0.27 10.1 0.8 0.27 10.1 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) DUF3040 PF11239.8 gi|433591784|ref|YP_007281280.1| - 0.39 11.0 5.0 0.47 10.8 5.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) HTH_10 PF04967.12 gi|433591785|ref|YP_007281281.1| - 1.8e-16 59.7 0.0 2.7e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|433591785|ref|YP_007281281.1| - 0.01 15.5 0.2 0.6 9.8 0.0 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 B2 PF11473.8 gi|433591785|ref|YP_007281281.1| - 0.054 13.3 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 RNA binding protein B2 Usp PF00582.26 gi|433591786|ref|YP_007281282.1| - 1.8e-62 210.0 11.4 2.1e-31 109.3 2.6 2.0 2 0 0 2 2 2 2 Universal stress protein family Aldo_ket_red PF00248.21 gi|433591786|ref|YP_007281282.1| - 0.0067 15.6 0.0 1.6 7.8 0.0 2.1 2 0 0 2 2 2 2 Aldo/keto reductase family CBS PF00571.28 gi|433591788|ref|YP_007281284.1| - 4.8e-23 81.4 0.1 2.6e-12 47.0 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_31 PF13560.6 gi|433591788|ref|YP_007281284.1| - 7.9e-12 45.3 1.5 1.8e-11 44.2 1.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|433591788|ref|YP_007281284.1| - 1.4e-10 41.1 0.0 2.9e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|433591788|ref|YP_007281284.1| - 9.3e-07 28.8 0.0 1.8e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|433591788|ref|YP_007281284.1| - 0.00018 21.4 0.1 0.0012 18.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|433591788|ref|YP_007281284.1| - 0.0007 19.4 2.1 0.0021 17.9 0.1 2.8 3 2 2 5 5 5 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|433591788|ref|YP_007281284.1| - 0.0067 16.8 0.1 0.015 15.7 0.0 1.7 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain Pou PF00157.17 gi|433591788|ref|YP_007281284.1| - 0.0075 16.2 0.0 0.026 14.5 0.0 1.9 1 1 0 1 1 1 1 Pou domain - N-terminal to homeobox domain Sigma70_r4 PF04545.16 gi|433591788|ref|YP_007281284.1| - 0.12 11.9 0.1 1.8 8.1 0.1 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 DUF555 PF04475.12 gi|433591789|ref|YP_007281285.1| - 4.3e-47 158.6 0.1 5.1e-47 158.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) BTP PF05232.12 gi|433591790|ref|YP_007281286.1| - 0.068 13.3 0.8 0.079 13.0 0.8 1.1 1 0 0 1 1 1 0 Chlorhexidine efflux transporter Ost4 PF10215.9 gi|433591790|ref|YP_007281286.1| - 0.13 12.1 0.4 0.13 12.1 0.4 1.6 2 0 0 2 2 2 0 Oligosaccaryltransferase MarR_2 PF12802.7 gi|433591792|ref|YP_007281288.1| - 6.7e-06 25.9 0.0 1.4e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|433591792|ref|YP_007281288.1| - 6.3e-05 23.0 0.1 0.00014 21.8 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|433591792|ref|YP_007281288.1| - 0.0013 18.6 0.0 0.0019 18.1 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433591792|ref|YP_007281288.1| - 0.0027 17.5 0.0 0.0042 16.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|433591792|ref|YP_007281288.1| - 0.0055 16.5 0.0 0.0096 15.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433591792|ref|YP_007281288.1| - 0.017 14.7 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PDGF_N PF04692.13 gi|433591792|ref|YP_007281288.1| - 0.035 14.9 0.0 0.067 14.0 0.0 1.5 1 0 0 1 1 1 0 Platelet-derived growth factor, N terminal region Fe_dep_repress PF01325.19 gi|433591792|ref|YP_007281288.1| - 0.036 14.3 0.0 0.056 13.7 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|433591792|ref|YP_007281288.1| - 0.11 13.0 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Proteasome PF00227.26 gi|433591793|ref|YP_007281289.1| - 1e-43 149.0 0.2 1.2e-43 148.8 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit GFO_IDH_MocA PF01408.22 gi|433591794|ref|YP_007281290.1| - 3e-28 99.0 0.1 1.1e-27 97.3 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|433591794|ref|YP_007281290.1| - 8.5e-06 25.8 0.0 1.7e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.15 gi|433591794|ref|YP_007281290.1| - 0.0012 19.1 0.1 0.0061 16.7 0.0 2.1 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|433591794|ref|YP_007281290.1| - 0.0015 18.2 0.1 0.0033 17.0 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|433591794|ref|YP_007281290.1| - 0.0029 18.1 0.0 0.0073 16.9 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|433591794|ref|YP_007281290.1| - 0.0083 15.5 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|433591794|ref|YP_007281290.1| - 0.041 14.5 0.2 0.08 13.6 0.2 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|433591794|ref|YP_007281290.1| - 0.047 14.4 0.1 0.17 12.6 0.0 2.0 2 0 0 2 2 2 0 CoA binding domain ThuA PF06283.11 gi|433591795|ref|YP_007281291.1| - 6.6e-32 111.4 0.1 7.9e-32 111.2 0.1 1.1 1 0 0 1 1 1 1 Trehalose utilisation DUF389 PF04087.14 gi|433591796|ref|YP_007281292.1| - 3.1e-34 118.0 16.8 3.1e-34 118.0 16.8 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF2919 PF11143.8 gi|433591796|ref|YP_007281292.1| - 0.028 14.8 1.2 0.13 12.6 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2919) DUF1269 PF06897.12 gi|433591796|ref|YP_007281292.1| - 4.4 7.7 13.7 87 3.5 8.1 3.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1269) IF-2B PF01008.17 gi|433591797|ref|YP_007281293.1| - 7.6e-46 156.6 0.7 9e-46 156.3 0.7 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family AAA_lid_2 PF17863.1 gi|433591797|ref|YP_007281293.1| - 0.11 12.4 7.0 0.12 12.2 0.2 2.8 3 0 0 3 3 3 0 AAA lid domain DUF1664 PF07889.12 gi|433591797|ref|YP_007281293.1| - 0.42 10.7 3.3 0.82 9.7 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) zinc_ribbon_10 PF10058.9 gi|433591799|ref|YP_007281295.1| - 0.085 12.6 0.1 0.4 10.5 0.2 1.9 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein ParA PF10609.9 gi|433591800|ref|YP_007281296.1| - 2.3e-100 335.1 0.0 2.8e-100 334.8 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase FeS_assembly_P PF01883.19 gi|433591800|ref|YP_007281296.1| - 1.1e-15 57.6 1.8 2.3e-15 56.5 0.9 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein CbiA PF01656.23 gi|433591800|ref|YP_007281296.1| - 3.3e-15 56.3 0.0 2.9e-14 53.2 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|433591800|ref|YP_007281296.1| - 2.4e-10 40.6 0.2 9.3e-09 35.4 0.1 2.2 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|433591800|ref|YP_007281296.1| - 7.7e-08 31.9 0.0 1.1e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|433591800|ref|YP_007281296.1| - 0.00014 21.4 0.0 0.01 15.3 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|433591800|ref|YP_007281296.1| - 0.00014 21.2 0.0 0.00025 20.4 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 gi|433591800|ref|YP_007281296.1| - 0.00034 19.9 4.2 0.00058 19.1 0.9 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|433591800|ref|YP_007281296.1| - 0.0075 15.9 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF1610 PF07754.11 gi|433591800|ref|YP_007281296.1| - 0.029 14.4 0.2 0.19 11.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) AAA_26 PF13500.6 gi|433591800|ref|YP_007281296.1| - 0.034 14.0 0.0 3.8 7.3 0.1 2.4 2 0 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 gi|433591800|ref|YP_007281296.1| - 0.037 13.5 0.7 0.26 10.7 0.3 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ RsgA_GTPase PF03193.16 gi|433591800|ref|YP_007281296.1| - 0.093 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase CLP1_P PF16575.5 gi|433591800|ref|YP_007281296.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|433591800|ref|YP_007281296.1| - 0.14 12.1 0.0 0.41 10.5 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase UDG PF03167.19 gi|433591802|ref|YP_007281298.1| - 1.7e-19 70.4 0.0 2e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF2064 PF09837.9 gi|433591804|ref|YP_007281300.1| - 0.00046 20.0 0.0 0.00092 19.0 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) HSDR_N_2 PF13588.6 gi|433591805|ref|YP_007281301.1| - 1.1e-06 28.6 0.0 1.7e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_9 PF08011.11 gi|433591805|ref|YP_007281301.1| - 0.024 14.5 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.6 gi|433591805|ref|YP_007281301.1| - 0.079 13.3 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily HpcH_HpaI PF03328.14 gi|433591806|ref|YP_007281302.1| - 2.2e-17 63.0 0.0 1.7e-16 60.0 0.0 2.4 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Malate_synthase PF01274.22 gi|433591806|ref|YP_007281302.1| - 0.0011 17.3 0.0 0.069 11.4 0.0 2.1 2 0 0 2 2 2 2 Malate synthase MaoC_dehydratas PF01575.19 gi|433591807|ref|YP_007281303.1| - 8.5e-08 31.8 0.0 1e-05 25.1 0.0 2.2 2 0 0 2 2 2 2 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|433591807|ref|YP_007281303.1| - 8e-06 26.0 0.1 0.014 15.5 0.0 2.5 2 0 0 2 2 2 2 N-terminal half of MaoC dehydratase DUF5486 PF17588.2 gi|433591807|ref|YP_007281303.1| - 0.087 12.7 0.0 0.25 11.3 0.0 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5486) MAAL_C PF07476.11 gi|433591808|ref|YP_007281304.1| - 1.7e-114 381.1 0.0 2.4e-114 380.7 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.13 gi|433591808|ref|YP_007281304.1| - 2e-71 238.8 0.3 3.8e-71 237.9 0.3 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.6 gi|433591808|ref|YP_007281304.1| - 1.2e-11 44.6 0.1 2e-11 43.9 0.1 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like DUF1839 PF08893.10 gi|433591808|ref|YP_007281304.1| - 0.11 11.6 0.0 0.39 9.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1839) Met_asp_mut_E PF06368.11 gi|433591809|ref|YP_007281305.1| - 1.3e-208 692.9 0.0 1.5e-208 692.7 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) B12-binding PF02310.19 gi|433591810|ref|YP_007281306.1| - 4.2e-16 59.1 0.8 5.4e-16 58.7 0.8 1.2 1 0 0 1 1 1 1 B12 binding domain ADH_zinc_N PF00107.26 gi|433591810|ref|YP_007281306.1| - 0.0029 17.6 0.4 0.17 11.9 0.0 2.1 1 1 1 2 2 2 2 Zinc-binding dehydrogenase CoA_transf_3 PF02515.17 gi|433591811|ref|YP_007281307.1| - 1.3e-120 402.9 0.0 1.5e-120 402.7 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III N6_Mtase PF02384.16 gi|433591812|ref|YP_007281308.1| - 2.4e-19 69.8 0.0 7.5e-11 41.9 0.0 3.1 3 1 0 3 3 3 2 N-6 DNA Methylase TaqI_C PF12950.7 gi|433591812|ref|YP_007281308.1| - 2.4e-13 50.2 0.1 5.3e-13 49.1 0.1 1.6 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Eco57I PF07669.11 gi|433591812|ref|YP_007281308.1| - 2.3e-10 40.9 0.1 5.9e-10 39.6 0.1 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase HSDR_N PF04313.14 gi|433591812|ref|YP_007281308.1| - 0.00036 20.5 0.4 0.0058 16.6 0.0 2.5 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF5519 PF17648.1 gi|433591812|ref|YP_007281308.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5519) PQQ_2 PF13360.6 gi|433591812|ref|YP_007281308.1| - 0.14 11.7 0.1 0.3 10.6 0.1 1.4 1 0 0 1 1 1 0 PQQ-like domain Lar_restr_allev PF14354.6 gi|433591814|ref|YP_007281310.1| - 0.049 14.0 0.8 0.067 13.6 0.8 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar PAS_4 PF08448.10 gi|433591815|ref|YP_007281311.1| - 3.1e-36 124.0 5.8 5.4e-13 49.1 0.1 3.9 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|433591815|ref|YP_007281311.1| - 2.2e-35 121.0 0.0 2e-13 50.5 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|433591815|ref|YP_007281311.1| - 1.3e-31 108.9 0.0 2e-14 53.5 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|433591815|ref|YP_007281311.1| - 8.9e-20 70.3 0.0 5.5e-09 35.8 0.0 3.8 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|433591815|ref|YP_007281311.1| - 9.1e-17 61.6 0.0 2.5e-16 60.1 0.0 1.8 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|433591815|ref|YP_007281311.1| - 3.6e-16 59.2 0.0 9.3e-05 22.6 0.0 3.9 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|433591815|ref|YP_007281311.1| - 9.5e-16 58.0 0.1 2e-15 56.9 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|433591815|ref|YP_007281311.1| - 8.3e-08 32.2 0.1 8.3e-08 32.2 0.1 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|433591815|ref|YP_007281311.1| - 8.8e-08 32.3 0.4 0.00061 19.9 0.0 4.3 3 1 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|433591815|ref|YP_007281311.1| - 0.0076 16.2 0.5 0.16 11.9 0.1 2.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PET117 PF15786.5 gi|433591815|ref|YP_007281311.1| - 2.4 8.5 5.2 55 4.1 0.2 3.4 3 0 0 3 3 3 0 PET assembly of cytochrome c oxidase, mitochondrial GCH_III PF05165.12 gi|433591817|ref|YP_007281313.1| - 1.8e-88 296.0 0.2 2.3e-88 295.6 0.2 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III GGDEF_2 PF17853.1 gi|433591817|ref|YP_007281313.1| - 2.1e-06 28.0 0.0 0.0016 18.7 0.0 2.2 2 0 0 2 2 2 2 GGDEF-like domain CBS PF00571.28 gi|433591818|ref|YP_007281314.1| - 8.1e-25 87.0 7.5 1.4e-12 47.8 1.2 2.2 2 0 0 2 2 2 2 CBS domain TF_Zn_Ribbon PF08271.12 gi|433591818|ref|YP_007281314.1| - 0.039 13.5 1.7 0.22 11.1 1.7 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding PGK PF00162.19 gi|433591819|ref|YP_007281315.1| - 7.9e-104 347.6 0.0 8.9e-104 347.4 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Rhamno_transf PF11316.8 gi|433591819|ref|YP_007281315.1| - 0.0063 15.9 0.4 0.01 15.2 0.4 1.2 1 0 0 1 1 1 1 Putative rhamnosyl transferase TMP_2 PF06791.13 gi|433591819|ref|YP_007281315.1| - 0.036 13.7 0.0 0.73 9.5 0.0 2.1 2 0 0 2 2 2 0 Prophage tail length tape measure protein Acetyltransf_1 PF00583.25 gi|433591820|ref|YP_007281316.1| - 2.9e-22 79.1 0.1 4e-22 78.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|433591820|ref|YP_007281316.1| - 2.8e-16 59.7 0.0 4e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433591820|ref|YP_007281316.1| - 6.4e-15 55.2 0.0 1e-14 54.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433591820|ref|YP_007281316.1| - 4.4e-08 33.0 0.0 7.3e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|433591820|ref|YP_007281316.1| - 8.6e-07 29.7 0.0 1.1e-06 29.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|433591820|ref|YP_007281316.1| - 4.8e-06 26.7 0.0 6.9e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|433591820|ref|YP_007281316.1| - 2.6e-05 24.4 2.3 2.6e-05 24.4 2.3 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|433591820|ref|YP_007281316.1| - 0.00025 20.7 0.0 0.00048 19.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 gi|433591820|ref|YP_007281316.1| - 0.00059 20.0 0.0 0.00081 19.6 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|433591820|ref|YP_007281316.1| - 0.00068 19.7 0.0 0.0014 18.8 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|433591820|ref|YP_007281316.1| - 0.00095 18.9 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|433591820|ref|YP_007281316.1| - 0.006 16.5 0.0 0.017 15.1 0.0 1.8 1 1 0 1 1 1 1 ESCO1/2 acetyl-transferase Usp PF00582.26 gi|433591822|ref|YP_007281318.1| - 6.2e-30 104.6 1.5 6.2e-30 104.6 1.5 1.7 2 0 0 2 2 2 1 Universal stress protein family AFOR_C PF01314.18 gi|433591822|ref|YP_007281318.1| - 0.022 13.8 0.1 0.025 13.6 0.1 1.2 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AMP-binding PF00501.28 gi|433591823|ref|YP_007281319.1| - 1.7e-107 359.6 0.0 2.1e-107 359.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433591823|ref|YP_007281319.1| - 9.6e-23 81.0 0.5 2.4e-22 79.7 0.5 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ECH_1 PF00378.20 gi|433591824|ref|YP_007281320.1| - 5.8e-52 176.5 0.0 7e-52 176.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|433591824|ref|YP_007281320.1| - 1.1e-35 123.7 0.0 1e-30 107.4 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase DUF761 PF05553.11 gi|433591824|ref|YP_007281320.1| - 2 8.0 3.5 3.6 7.2 3.5 1.4 1 0 0 1 1 1 0 Cotton fibre expressed protein PAP2_3 PF14378.6 gi|433591826|ref|YP_007281322.1| - 5.1e-12 45.9 12.9 8.3e-12 45.2 12.9 1.3 1 0 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 gi|433591826|ref|YP_007281322.1| - 9e-08 32.0 6.3 1.9e-07 30.9 5.2 2.1 1 1 1 2 2 2 1 PAP2 superfamily Phage_holin_3_6 PF07332.11 gi|433591826|ref|YP_007281322.1| - 0.27 11.3 7.3 0.46 10.6 1.4 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III FixP_N PF14715.6 gi|433591826|ref|YP_007281322.1| - 2.9 7.7 7.9 0.27 11.0 1.6 2.4 2 0 0 2 2 2 0 N-terminal domain of cytochrome oxidase-cbb3, FixP Methyltransf_3 PF01596.17 gi|433591827|ref|YP_007281323.1| - 5.7e-24 84.5 0.0 7e-24 84.2 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|433591827|ref|YP_007281323.1| - 1.8e-12 48.2 0.1 3.3e-12 47.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433591827|ref|YP_007281323.1| - 1.6e-05 25.5 0.0 3.7e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433591827|ref|YP_007281323.1| - 2.8e-05 23.9 0.0 3.7e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|433591827|ref|YP_007281323.1| - 0.00042 19.9 0.0 0.00062 19.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|433591827|ref|YP_007281323.1| - 0.0013 18.5 0.0 0.0024 17.6 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|433591827|ref|YP_007281323.1| - 0.031 15.0 0.0 0.063 14.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|433591827|ref|YP_007281323.1| - 0.1 11.8 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF938 PF06080.12 gi|433591827|ref|YP_007281323.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) SNARE_assoc PF09335.11 gi|433591828|ref|YP_007281324.1| - 8.2 6.9 13.0 36 4.9 13.0 2.2 1 1 0 1 1 1 0 SNARE associated Golgi protein PAS PF00989.25 gi|433591829|ref|YP_007281325.1| - 6.8e-53 177.5 3.5 8.3e-15 54.8 0.1 7.1 7 0 0 7 7 7 6 PAS fold PAS_4 PF08448.10 gi|433591829|ref|YP_007281325.1| - 1.4e-49 167.0 29.6 8.8e-13 48.5 0.1 7.1 7 0 0 7 7 7 6 PAS fold PAS_9 PF13426.7 gi|433591829|ref|YP_007281325.1| - 2.7e-41 140.0 0.0 3e-10 40.3 0.0 7.0 7 1 0 7 7 7 5 PAS domain PAS_8 PF13188.7 gi|433591829|ref|YP_007281325.1| - 1.7e-31 107.7 11.1 1.9e-08 34.1 0.1 7.6 7 0 0 7 7 7 5 PAS domain HATPase_c PF02518.26 gi|433591829|ref|YP_007281325.1| - 7.2e-27 94.1 0.0 1.6e-26 93.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|433591829|ref|YP_007281325.1| - 5.9e-17 61.9 0.5 0.0014 18.8 0.0 7.1 6 2 0 6 6 6 3 PAS fold GAF_2 PF13185.6 gi|433591829|ref|YP_007281325.1| - 6.4e-15 55.7 7.9 7.5e-14 52.2 0.5 4.0 4 0 0 4 4 4 1 GAF domain PAS_3 PF08447.12 gi|433591829|ref|YP_007281325.1| - 3.3e-14 52.9 1.1 0.00044 20.5 0.0 7.1 7 2 0 7 7 7 3 PAS fold HisKA PF00512.25 gi|433591829|ref|YP_007281325.1| - 3e-10 40.0 2.4 3.8e-10 39.7 0.1 2.6 2 0 0 2 2 1 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|433591829|ref|YP_007281325.1| - 8.6e-07 29.4 0.0 2.8e-06 27.7 0.0 1.9 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|433591829|ref|YP_007281325.1| - 0.00019 21.3 0.0 0.00036 20.4 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_10 PF13596.6 gi|433591829|ref|YP_007281325.1| - 0.00031 21.3 0.0 0.099 13.2 0.0 3.4 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|433591829|ref|YP_007281325.1| - 0.0004 20.3 0.3 0.0018 18.3 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain GAF PF01590.26 gi|433591829|ref|YP_007281325.1| - 0.00052 20.6 0.0 0.0024 18.5 0.0 2.3 1 0 0 1 1 1 1 GAF domain DUF1467 PF07330.12 gi|433591830|ref|YP_007281326.1| - 0.00079 19.3 1.3 0.0012 18.7 0.2 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1467) TM_helix PF05552.12 gi|433591832|ref|YP_007281328.1| - 3e-19 68.7 3.1 4.7e-13 48.9 0.7 2.9 2 0 0 2 2 2 2 Conserved TM helix DsbD PF02683.15 gi|433591832|ref|YP_007281328.1| - 0.073 12.9 4.7 0.41 10.5 4.7 2.0 1 1 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region DUF962 PF06127.11 gi|433591832|ref|YP_007281328.1| - 0.67 10.1 2.6 2.1 8.5 2.6 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF962) DUF373 PF04123.13 gi|433591832|ref|YP_007281328.1| - 2.6 7.4 7.6 2.1 7.7 6.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF373) PMT_4TMC PF16192.5 gi|433591832|ref|YP_007281328.1| - 3.5 7.2 7.4 0.29 10.7 2.0 1.9 2 1 0 2 2 2 0 C-terminal four TMM region of protein-O-mannosyltransferase Creatininase PF02633.14 gi|433591833|ref|YP_007281329.1| - 5.7e-66 222.4 1.0 6.4e-66 222.3 1.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase NikR_C PF08753.11 gi|433591834|ref|YP_007281330.1| - 2.7e-21 75.5 2.0 4.2e-21 74.9 2.0 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|433591834|ref|YP_007281330.1| - 3e-07 30.1 0.0 4.9e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|433591834|ref|YP_007281330.1| - 0.0015 18.3 0.0 0.0028 17.5 0.0 1.3 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicB_lk_antitox PF15919.5 gi|433591834|ref|YP_007281330.1| - 0.022 14.9 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Cupin_2 PF07883.11 gi|433591835|ref|YP_007281331.1| - 3.4e-10 39.5 0.1 4.8e-10 39.0 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|433591835|ref|YP_007281331.1| - 3.7e-05 23.6 0.0 4.7e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|433591835|ref|YP_007281331.1| - 0.00046 19.8 0.0 0.00081 19.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|433591835|ref|YP_007281331.1| - 0.019 14.7 0.1 0.028 14.2 0.1 1.3 1 1 0 1 1 1 0 Cupin AraC_binding_2 PF14525.6 gi|433591835|ref|YP_007281331.1| - 0.023 14.4 0.0 0.025 14.3 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain MannoseP_isomer PF01050.18 gi|433591835|ref|YP_007281331.1| - 0.041 13.8 0.0 0.049 13.5 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase KduI PF04962.12 gi|433591835|ref|YP_007281331.1| - 0.096 12.0 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 KduI/IolB family EutQ PF06249.12 gi|433591835|ref|YP_007281331.1| - 0.14 11.9 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ CTP_synth_N PF06418.14 gi|433591835|ref|YP_007281331.1| - 0.16 11.2 0.0 0.2 10.9 0.0 1.1 1 0 0 1 1 1 0 CTP synthase N-terminus Acyl-CoA_dh_1 PF00441.24 gi|433591837|ref|YP_007281333.1| - 3.7e-41 140.8 2.9 3.7e-41 140.8 2.9 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433591837|ref|YP_007281333.1| - 5.5e-28 97.0 0.3 2.3e-27 95.0 0.0 2.1 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|433591837|ref|YP_007281333.1| - 4.3e-24 85.4 1.6 4.3e-24 85.4 1.6 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|433591837|ref|YP_007281333.1| - 1.2e-17 64.4 4.8 2.7e-17 63.3 4.8 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HAD PF12710.7 gi|433591837|ref|YP_007281333.1| - 0.029 14.8 1.1 0.039 14.4 0.1 1.7 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Response_reg PF00072.24 gi|433591838|ref|YP_007281334.1| - 1.1e-20 73.8 0.4 1.3e-20 73.6 0.4 1.1 1 0 0 1 1 1 1 Response regulator receiver domain 3HCDH_N PF02737.18 gi|433591839|ref|YP_007281335.1| - 5.3e-64 215.4 0.2 8.4e-64 214.8 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|433591839|ref|YP_007281335.1| - 3.6e-60 203.4 0.0 9.7e-60 202.0 0.0 1.6 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|433591839|ref|YP_007281335.1| - 6e-49 164.6 0.9 3.2e-30 104.6 0.0 3.4 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|433591839|ref|YP_007281335.1| - 6.9e-34 117.8 0.0 2.4e-30 106.2 0.0 2.4 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|433591839|ref|YP_007281335.1| - 7.3e-06 26.0 0.0 1.3e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|433591839|ref|YP_007281335.1| - 1.4e-05 25.3 0.9 7.1e-05 23.0 0.9 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|433591839|ref|YP_007281335.1| - 0.0011 19.5 1.7 0.007 16.9 1.7 2.3 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|433591839|ref|YP_007281335.1| - 0.12 11.7 1.2 1.3 8.4 0.2 2.4 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acyl-CoA_dh_1 PF00441.24 gi|433591840|ref|YP_007281336.1| - 8.6e-52 175.3 2.6 1.4e-51 174.7 2.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|433591840|ref|YP_007281336.1| - 6.3e-36 123.5 1.8 7e-36 123.3 0.3 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|433591840|ref|YP_007281336.1| - 4.2e-29 101.5 2.6 6e-29 101.0 2.6 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433591840|ref|YP_007281336.1| - 1.1e-24 86.4 0.0 2.4e-24 85.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB PF03241.13 gi|433591840|ref|YP_007281336.1| - 0.021 13.9 0.1 0.034 13.2 0.1 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal YopD PF05844.12 gi|433591840|ref|YP_007281336.1| - 0.029 13.4 0.1 0.044 12.8 0.1 1.3 1 0 0 1 1 1 0 YopD protein S-l_SbsC_C PF18316.1 gi|433591840|ref|YP_007281336.1| - 0.17 12.4 1.8 11 6.6 0.2 2.8 3 0 0 3 3 3 0 S-layer protein SbsC C-terminal domain HTH_10 PF04967.12 gi|433591841|ref|YP_007281337.1| - 2.2e-15 56.2 0.1 4.2e-15 55.3 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|433591841|ref|YP_007281337.1| - 7.8e-05 22.5 0.2 0.00029 20.7 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_30 PF13556.6 gi|433591841|ref|YP_007281337.1| - 0.00014 21.6 0.0 0.00044 20.0 0.0 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.19 gi|433591841|ref|YP_007281337.1| - 0.031 14.1 0.0 0.087 12.6 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_20 PF12840.7 gi|433591841|ref|YP_007281337.1| - 0.043 13.9 0.0 0.12 12.5 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|433591841|ref|YP_007281337.1| - 0.08 12.5 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433591841|ref|YP_007281337.1| - 0.15 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_psq PF05225.16 gi|433591841|ref|YP_007281337.1| - 0.16 11.7 2.0 0.21 11.4 0.0 2.1 3 0 0 3 3 3 0 helix-turn-helix, Psq domain E1-E2_ATPase PF00122.20 gi|433591842|ref|YP_007281338.1| - 6e-56 188.8 1.2 6e-56 188.8 1.2 2.2 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433591842|ref|YP_007281338.1| - 4.7e-38 131.6 11.1 1.4e-37 130.0 11.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|433591842|ref|YP_007281338.1| - 5.2e-14 52.4 3.8 6.3e-14 52.2 0.0 3.0 4 0 0 4 4 4 1 Heavy-metal-associated domain HAD PF12710.7 gi|433591842|ref|YP_007281338.1| - 0.0015 19.0 0.2 0.0043 17.5 0.2 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|433591842|ref|YP_007281338.1| - 0.0069 16.2 1.1 0.03 14.1 1.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase FAD_binding_2 PF00890.24 gi|433591843|ref|YP_007281339.1| - 4.3e-93 312.7 6.5 4.3e-93 312.7 6.5 1.4 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|433591843|ref|YP_007281339.1| - 4.5e-22 78.4 0.0 9.4e-22 77.4 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|433591843|ref|YP_007281339.1| - 9.7e-09 35.3 7.3 4e-08 33.2 7.3 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|433591843|ref|YP_007281339.1| - 1e-05 25.0 0.3 2.8e-05 23.6 0.3 1.7 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|433591843|ref|YP_007281339.1| - 4e-05 22.5 2.2 0.28 9.9 0.7 3.1 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_2 PF07992.14 gi|433591843|ref|YP_007281339.1| - 4.3e-05 22.9 2.8 0.00051 19.4 0.5 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|433591843|ref|YP_007281339.1| - 0.00011 21.5 0.1 0.00063 19.1 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|433591843|ref|YP_007281339.1| - 0.019 14.0 0.5 0.087 11.9 0.8 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|433591843|ref|YP_007281339.1| - 0.035 14.3 2.5 0.09 13.0 1.3 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|433591843|ref|YP_007281339.1| - 0.044 13.4 1.0 0.095 12.3 0.6 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|433591843|ref|YP_007281339.1| - 0.052 14.0 0.0 0.16 12.4 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding Thi4 PF01946.17 gi|433591843|ref|YP_007281339.1| - 0.064 12.5 1.8 5.2 6.3 0.1 2.5 2 0 0 2 2 2 0 Thi4 family Shikimate_DH PF01488.20 gi|433591843|ref|YP_007281339.1| - 0.094 12.8 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|433591843|ref|YP_007281339.1| - 0.12 11.7 0.1 0.21 10.9 0.1 1.2 1 0 0 1 1 1 0 ThiF family HhH-GPD PF00730.25 gi|433591844|ref|YP_007281340.1| - 1.4e-16 60.9 0.0 1.8e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein zf-HC2 PF13490.6 gi|433591844|ref|YP_007281340.1| - 0.07 13.4 1.1 9 6.7 0.0 2.6 2 0 0 2 2 2 0 Putative zinc-finger peroxidase PF00141.23 gi|433591846|ref|YP_007281342.1| - 3e-86 288.8 0.0 1.1e-48 166.0 0.0 2.2 2 0 0 2 2 2 2 Peroxidase RimK PF08443.11 gi|433591847|ref|YP_007281343.1| - 7.6e-23 81.1 0.0 1.4e-22 80.2 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.11 gi|433591847|ref|YP_007281343.1| - 8.4e-10 38.7 0.8 1.6e-07 31.2 0.1 2.3 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease ATP-grasp_3 PF02655.14 gi|433591847|ref|YP_007281343.1| - 5.2e-08 33.1 0.0 2e-07 31.2 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|433591847|ref|YP_007281343.1| - 1.3e-07 31.2 0.0 2.1e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain R2K_3 PF14243.6 gi|433591847|ref|YP_007281343.1| - 5.1e-06 26.6 1.2 1.1e-05 25.6 1.2 1.5 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 gag-asp_proteas PF13975.6 gi|433591847|ref|YP_007281343.1| - 0.00068 20.1 0.2 0.0018 18.8 0.2 1.7 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|433591847|ref|YP_007281343.1| - 0.0066 17.1 2.5 0.013 16.2 1.0 2.3 2 0 0 2 2 2 1 Aspartyl protease DUF5488 PF17590.2 gi|433591847|ref|YP_007281343.1| - 0.075 12.8 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5488) BON PF04972.17 gi|433591847|ref|YP_007281343.1| - 0.34 11.2 5.1 26 5.2 0.2 4.1 4 0 0 4 4 4 0 BON domain Polysacc_synt PF01943.17 gi|433591848|ref|YP_007281344.1| - 5.9e-25 88.2 14.7 5.9e-25 88.2 14.7 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|433591848|ref|YP_007281344.1| - 1e-23 84.0 2.4 1e-23 84.0 2.4 1.9 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|433591848|ref|YP_007281344.1| - 6.1e-21 75.0 19.3 6.1e-21 75.0 19.3 4.2 3 1 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|433591848|ref|YP_007281344.1| - 4.1e-09 36.3 3.1 4.1e-09 36.3 3.1 3.3 3 1 0 3 3 3 2 MatE DUF4781 PF16013.5 gi|433591848|ref|YP_007281344.1| - 1.7 7.4 4.7 4.4 6.0 4.7 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) DUF2101 PF09874.9 gi|433591848|ref|YP_007281344.1| - 1.9 8.1 6.1 2.8 7.6 0.6 2.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2101) Acetyltransf_1 PF00583.25 gi|433591849|ref|YP_007281345.1| - 5.2e-12 46.0 0.0 8.1e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|433591849|ref|YP_007281345.1| - 2.1e-10 40.6 0.0 3.2e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|433591849|ref|YP_007281345.1| - 4e-09 36.8 0.1 1.2e-08 35.2 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|433591849|ref|YP_007281345.1| - 9.7e-06 25.8 0.0 1.6e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|433591849|ref|YP_007281345.1| - 2.2e-05 24.5 0.0 5.3e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433591849|ref|YP_007281345.1| - 0.00022 21.1 0.0 0.00041 20.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|433591849|ref|YP_007281345.1| - 0.0014 19.3 0.0 0.0024 18.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF2318 PF10080.9 gi|433591849|ref|YP_007281345.1| - 0.13 12.4 0.1 0.23 11.6 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DNA_RNApol_7kD PF03604.13 gi|433591849|ref|YP_007281345.1| - 0.35 10.6 1.6 0.68 9.7 1.6 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|433591849|ref|YP_007281345.1| - 7.5 6.4 6.8 20 5.0 0.4 3.4 3 0 0 3 3 3 0 Rubredoxin metal binding domain AstE_AspA PF04952.14 gi|433591850|ref|YP_007281346.1| - 8.4e-67 225.3 0.0 1e-66 225.0 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Biotin_lipoyl PF00364.22 gi|433591850|ref|YP_007281346.1| - 0.083 12.7 0.1 0.23 11.3 0.1 1.8 1 1 0 1 1 1 0 Biotin-requiring enzyme Sdh_cyt PF01127.22 gi|433591851|ref|YP_007281347.1| - 4.4e-23 81.6 2.5 5.1e-23 81.4 2.5 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.22 gi|433591852|ref|YP_007281348.1| - 2.3e-09 37.3 6.7 3e-09 37.0 6.7 1.2 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CCB2_CCB4 PF11152.8 gi|433591852|ref|YP_007281348.1| - 0.0065 15.8 0.5 0.0076 15.6 0.5 1.2 1 0 0 1 1 1 1 Cofactor assembly of complex C subunit B, CCB2/CCB4 DUF485 PF04341.12 gi|433591852|ref|YP_007281348.1| - 0.77 9.7 8.2 0.43 10.6 6.4 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF485 Fer2_3 PF13085.6 gi|433591853|ref|YP_007281349.1| - 1e-33 115.6 0.2 5.3e-33 113.3 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|433591853|ref|YP_007281349.1| - 2.6e-13 50.2 3.2 5.7e-13 49.1 3.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433591853|ref|YP_007281349.1| - 5.3e-08 32.8 3.6 1.3e-07 31.6 3.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|433591853|ref|YP_007281349.1| - 1.7e-06 28.5 1.2 4.2e-06 27.3 0.3 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|433591853|ref|YP_007281349.1| - 2.5e-05 24.7 3.4 5.9e-05 23.5 3.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433591853|ref|YP_007281349.1| - 0.0018 18.4 7.2 0.0018 18.4 7.2 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|433591853|ref|YP_007281349.1| - 0.0038 17.4 1.2 1.9 8.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|433591853|ref|YP_007281349.1| - 0.0073 16.1 7.2 0.54 10.0 0.4 2.5 1 1 1 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|433591853|ref|YP_007281349.1| - 0.016 16.1 8.4 0.091 13.7 7.4 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|433591853|ref|YP_007281349.1| - 0.032 14.4 2.7 0.19 11.9 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|433591853|ref|YP_007281349.1| - 0.26 11.9 8.4 0.64 10.7 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|433591853|ref|YP_007281349.1| - 0.96 9.4 9.5 3 7.8 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|433591853|ref|YP_007281349.1| - 1.8 8.8 7.4 3 8.1 2.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|433591853|ref|YP_007281349.1| - 2.7 8.8 5.5 28 5.6 0.1 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|433591853|ref|YP_007281349.1| - 3.5 8.8 11.9 2.1 9.5 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.24 gi|433591854|ref|YP_007281350.1| - 2.1e-121 405.9 9.1 2.1e-121 405.9 9.1 1.5 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|433591854|ref|YP_007281350.1| - 2.3e-38 131.0 0.2 3.8e-38 130.4 0.2 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|433591854|ref|YP_007281350.1| - 4.3e-10 39.3 6.4 0.00034 19.9 3.8 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|433591854|ref|YP_007281350.1| - 0.0004 19.2 0.8 0.0004 19.2 0.8 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|433591854|ref|YP_007281350.1| - 0.00041 19.6 4.9 0.00091 18.4 4.9 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|433591854|ref|YP_007281350.1| - 0.0016 17.7 1.4 0.0031 16.8 1.4 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|433591854|ref|YP_007281350.1| - 0.0027 17.1 4.7 0.0027 17.1 4.7 2.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|433591854|ref|YP_007281350.1| - 0.0058 15.9 2.3 0.061 12.6 0.4 2.5 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|433591854|ref|YP_007281350.1| - 0.0081 15.8 8.8 0.086 12.4 8.0 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|433591854|ref|YP_007281350.1| - 0.018 14.3 1.8 0.059 12.6 0.8 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|433591854|ref|YP_007281350.1| - 0.042 13.1 2.2 0.09 12.1 2.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|433591854|ref|YP_007281350.1| - 0.17 12.5 1.1 0.48 11.0 1.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF92 PF01940.16 gi|433591855|ref|YP_007281351.1| - 0.24 10.8 3.9 0.25 10.7 3.9 1.1 1 0 0 1 1 1 0 Integral membrane protein DUF92 PsbM PF05151.12 gi|433591855|ref|YP_007281351.1| - 2.7 7.9 7.4 0.53 10.1 2.7 2.1 2 1 0 2 2 2 0 Photosystem II reaction centre M protein (PsbM) DUF1427 PF07235.11 gi|433591856|ref|YP_007281352.1| - 8.3e-05 22.5 4.1 9.2e-05 22.3 4.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) MarR_2 PF12802.7 gi|433591857|ref|YP_007281353.1| - 5.6e-05 22.9 0.1 7e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433591857|ref|YP_007281353.1| - 0.00011 22.1 0.0 0.00014 21.7 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|433591857|ref|YP_007281353.1| - 0.00047 19.9 0.1 0.00063 19.5 0.1 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|433591857|ref|YP_007281353.1| - 0.0014 19.0 0.1 0.0018 18.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|433591857|ref|YP_007281353.1| - 0.0031 17.6 0.0 0.0041 17.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|433591857|ref|YP_007281353.1| - 0.0093 15.9 0.1 0.018 15.0 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|433591857|ref|YP_007281353.1| - 0.021 15.2 0.0 0.022 15.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.6 gi|433591857|ref|YP_007281353.1| - 0.021 14.4 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HD PF01966.22 gi|433591858|ref|YP_007281354.1| - 6.5e-09 36.0 2.7 1.4e-08 35.0 2.7 1.6 1 0 0 1 1 1 1 HD domain AhpC-TSA PF00578.21 gi|433591859|ref|YP_007281355.1| - 8e-32 109.8 0.0 9.2e-32 109.6 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|433591859|ref|YP_007281355.1| - 6.6e-22 77.8 0.0 7.8e-22 77.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|433591859|ref|YP_007281355.1| - 7.4e-05 22.4 0.0 0.0001 21.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) MttA_Hcf106 PF02416.16 gi|433591860|ref|YP_007281356.1| - 1.9e-14 52.7 2.2 2.1e-14 52.6 2.2 1.3 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4834 PF16118.5 gi|433591860|ref|YP_007281356.1| - 0.036 15.0 0.1 0.051 14.5 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4834) Acyl-CoA_dh_1 PF00441.24 gi|433591861|ref|YP_007281357.1| - 1.2e-35 122.9 0.3 2e-35 122.2 0.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433591861|ref|YP_007281357.1| - 8.8e-22 77.1 0.0 1.6e-21 76.3 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|433591861|ref|YP_007281357.1| - 4.7e-13 49.8 0.3 1e-12 48.7 0.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|433591861|ref|YP_007281357.1| - 4e-11 43.3 0.2 4e-11 43.3 0.2 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|433591861|ref|YP_007281357.1| - 0.0036 17.0 0.0 0.0066 16.1 0.0 1.4 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal adh_short_C2 PF13561.6 gi|433591862|ref|YP_007281358.1| - 1.9e-67 227.2 0.7 2.3e-67 227.0 0.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433591862|ref|YP_007281358.1| - 1.5e-55 187.7 0.1 2e-55 187.3 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433591862|ref|YP_007281358.1| - 2.9e-14 53.4 0.2 4.1e-14 52.9 0.2 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433591862|ref|YP_007281358.1| - 0.0012 18.4 0.5 0.0019 17.7 0.5 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|433591862|ref|YP_007281358.1| - 0.0039 16.5 0.4 0.007 15.7 0.4 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ApbA PF02558.16 gi|433591862|ref|YP_007281358.1| - 0.034 13.8 0.1 0.053 13.2 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DHOase PF12890.7 gi|433591862|ref|YP_007281358.1| - 0.048 13.6 0.0 0.12 12.4 0.0 1.5 2 0 0 2 2 2 0 Dihydro-orotase-like RmlD_sub_bind PF04321.17 gi|433591862|ref|YP_007281358.1| - 0.11 11.6 1.5 0.17 11.0 1.5 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|433591862|ref|YP_007281358.1| - 0.16 10.9 0.2 0.24 10.4 0.2 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family T2SSE PF00437.20 gi|433591863|ref|YP_007281359.1| - 4.5e-43 147.3 0.0 7e-43 146.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|433591863|ref|YP_007281359.1| - 0.008 15.9 0.1 0.016 14.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|433591863|ref|YP_007281359.1| - 0.079 13.2 0.0 3.7 7.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain T2SSF PF00482.23 gi|433591864|ref|YP_007281360.1| - 4.7e-31 107.4 6.2 2.2e-16 60.0 0.7 3.1 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F T7SS_ESX_EspC PF10824.8 gi|433591864|ref|YP_007281360.1| - 0.028 14.9 0.1 0.073 13.6 0.1 1.7 1 0 0 1 1 1 0 Excreted virulence factor EspC, type VII ESX diderm MnmE_helical PF12631.7 gi|433591864|ref|YP_007281360.1| - 0.042 14.0 0.2 0.1 12.7 0.2 1.6 1 0 0 1 1 1 0 MnmE helical domain Orf78 PF06024.12 gi|433591864|ref|YP_007281360.1| - 0.21 11.9 1.2 2.2 8.6 0.2 2.6 2 0 0 2 2 2 0 Orf78 (ac78) Nramp PF01566.18 gi|433591866|ref|YP_007281362.1| - 0.019 13.9 0.0 0.026 13.5 0.0 1.1 1 0 0 1 1 1 0 Natural resistance-associated macrophage protein PAS_9 PF13426.7 gi|433591867|ref|YP_007281363.1| - 0.058 13.7 0.0 0.43 10.8 0.0 2.1 2 0 0 2 2 2 0 PAS domain PepSY_2 PF13670.6 gi|433591868|ref|YP_007281364.1| - 0.078 13.0 0.1 1.8 8.6 0.1 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain EIN3 PF04873.13 gi|433591870|ref|YP_007281366.1| - 0.055 12.8 0.0 0.088 12.1 0.0 1.2 1 0 0 1 1 1 0 Ethylene insensitive 3 CheR PF01739.18 gi|433591871|ref|YP_007281367.1| - 1.4e-46 158.5 0.0 1.8e-46 158.1 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|433591871|ref|YP_007281367.1| - 8.3e-14 51.1 0.4 8.3e-14 51.1 0.4 2.6 3 0 0 3 3 3 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|433591871|ref|YP_007281367.1| - 1.8e-07 31.8 0.0 2.2e-05 25.1 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433591871|ref|YP_007281367.1| - 3.6e-07 30.8 0.0 0.00058 20.5 0.0 2.7 2 1 1 3 3 3 2 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433591871|ref|YP_007281367.1| - 1.8e-06 27.8 0.0 0.00039 20.2 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433591871|ref|YP_007281367.1| - 7e-05 23.4 0.0 0.0031 18.1 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433591871|ref|YP_007281367.1| - 0.002 18.0 0.0 0.0026 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|433591871|ref|YP_007281367.1| - 0.0073 15.9 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Acetyltransf_6 PF13480.7 gi|433591871|ref|YP_007281367.1| - 0.073 13.2 0.2 0.19 11.9 0.2 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CheD PF03975.13 gi|433591872|ref|YP_007281368.1| - 2.1e-32 111.5 0.0 2.5e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction Orn_Arg_deC_N PF02784.16 gi|433591872|ref|YP_007281368.1| - 0.086 12.2 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CheC PF04509.12 gi|433591873|ref|YP_007281369.1| - 4e-20 71.4 0.8 5.4e-13 48.6 0.1 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|433591873|ref|YP_007281369.1| - 1.3e-14 54.1 0.8 9e-08 32.2 0.1 2.7 2 1 0 2 2 2 2 Chemotaxis phosphatase CheX CheC PF04509.12 gi|433591874|ref|YP_007281370.1| - 2.3e-12 46.6 0.1 6.1e-12 45.2 0.0 1.8 2 0 0 2 2 2 1 CheC-like family CheX PF13690.6 gi|433591874|ref|YP_007281370.1| - 2.3e-06 27.7 0.0 4.5e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX Hpt PF01627.23 gi|433591875|ref|YP_007281371.1| - 1.8e-21 76.2 0.5 1.8e-21 76.2 0.5 3.4 4 0 0 4 4 4 1 Hpt domain HATPase_c PF02518.26 gi|433591875|ref|YP_007281371.1| - 4.8e-18 65.7 0.0 1.1e-17 64.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.19 gi|433591875|ref|YP_007281371.1| - 6.4e-13 48.5 0.1 1.2e-12 47.6 0.1 1.5 1 0 0 1 1 1 1 CheW-like domain H-kinase_dim PF02895.14 gi|433591875|ref|YP_007281371.1| - 4.9e-09 36.5 3.6 1.6e-08 34.8 3.6 2.0 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain P2 PF07194.11 gi|433591875|ref|YP_007281371.1| - 9.7e-06 25.6 0.0 5e-05 23.3 0.0 2.4 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c_2 PF13581.6 gi|433591875|ref|YP_007281371.1| - 1.2e-05 25.3 0.5 1.2e-05 25.3 0.5 2.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|433591875|ref|YP_007281371.1| - 0.0025 17.6 0.0 0.0061 16.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheB_methylest PF01339.17 gi|433591876|ref|YP_007281372.1| - 2.2e-57 193.5 0.3 4.9e-57 192.4 0.1 1.6 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 gi|433591876|ref|YP_007281372.1| - 1.5e-24 86.3 0.1 3.2e-24 85.2 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|433591877|ref|YP_007281373.1| - 3.3e-31 107.8 0.1 3.6e-31 107.6 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.19 gi|433591877|ref|YP_007281373.1| - 0.006 16.6 0.0 0.0088 16.1 0.0 1.3 1 0 0 1 1 1 1 B12 binding domain PA PF02225.22 gi|433591877|ref|YP_007281373.1| - 0.13 12.3 0.3 0.32 11.0 0.2 1.7 1 1 1 2 2 2 0 PA domain CheW PF01584.19 gi|433591878|ref|YP_007281374.1| - 2.2e-21 75.9 0.3 3.7e-21 75.2 0.3 1.3 1 0 0 1 1 1 1 CheW-like domain CheW PF01584.19 gi|433591879|ref|YP_007281375.1| - 1.1e-14 54.3 0.0 1.3e-14 54.0 0.0 1.0 1 0 0 1 1 1 1 CheW-like domain COX14 PF14880.6 gi|433591880|ref|YP_007281376.1| - 0.063 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Cytochrome oxidase c assembly DUF4307 PF14155.6 gi|433591880|ref|YP_007281376.1| - 0.17 11.7 0.0 6.3 6.7 0.0 3.0 4 0 0 4 4 4 0 Domain of unknown function (DUF4307) DUF2110 PF09883.9 gi|433591881|ref|YP_007281377.1| - 1.1e-92 309.6 0.0 1.3e-92 309.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) TFIIE_alpha PF02002.17 gi|433591882|ref|YP_007281378.1| - 1.8e-18 66.3 0.1 3.8e-18 65.3 0.1 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.16 gi|433591882|ref|YP_007281378.1| - 0.0029 17.6 0.1 0.0099 16.0 0.1 1.8 1 0 0 1 1 1 1 Sigma-70 region 3 Rad50_zn_hook PF04423.14 gi|433591882|ref|YP_007281378.1| - 0.0065 16.3 0.3 0.054 13.3 0.0 2.4 2 0 0 2 2 2 1 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.16 gi|433591882|ref|YP_007281378.1| - 0.011 15.7 0.1 0.023 14.7 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain HTH_20 PF12840.7 gi|433591882|ref|YP_007281378.1| - 0.029 14.4 0.3 0.21 11.7 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|433591882|ref|YP_007281378.1| - 0.049 13.7 1.8 0.094 12.8 1.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|433591882|ref|YP_007281378.1| - 0.052 13.0 0.1 0.099 12.1 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|433591882|ref|YP_007281378.1| - 0.067 13.3 1.8 0.72 10.0 1.1 2.5 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc-ribbons_6 PF07191.12 gi|433591882|ref|YP_007281378.1| - 0.085 12.9 0.2 0.14 12.1 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons zf_UBZ PF18439.1 gi|433591882|ref|YP_007281378.1| - 0.12 12.0 0.9 7.4 6.3 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|433591882|ref|YP_007281378.1| - 0.15 12.1 0.1 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lactamase_B PF00753.27 gi|433591883|ref|YP_007281379.1| - 1.4e-22 80.7 4.5 2.3e-22 80.0 4.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433591883|ref|YP_007281379.1| - 1.2e-08 34.7 2.6 2e-07 30.7 0.7 2.4 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|433591883|ref|YP_007281379.1| - 0.018 15.0 0.0 0.062 13.2 0.0 2.0 2 1 0 2 2 2 0 Beta-lactamase superfamily domain AAA_25 PF13481.6 gi|433591883|ref|YP_007281379.1| - 0.045 13.3 0.0 6.8 6.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain AMP-binding PF00501.28 gi|433591884|ref|YP_007281380.1| - 2.8e-103 345.8 0.0 3.2e-103 345.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433591884|ref|YP_007281380.1| - 3.3e-21 76.0 0.5 3.3e-21 76.0 0.5 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DUF3738 PF12543.8 gi|433591885|ref|YP_007281381.1| - 0.15 12.2 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3738) Pam17 PF08566.10 gi|433591885|ref|YP_007281381.1| - 0.25 11.2 0.1 0.36 10.7 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 Trm56 PF01994.16 gi|433591886|ref|YP_007281382.1| - 2.4e-46 156.5 0.0 3.6e-46 156.0 0.0 1.3 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Cupin_2 PF07883.11 gi|433591887|ref|YP_007281383.1| - 1.4e-16 59.9 0.0 2.3e-16 59.3 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|433591887|ref|YP_007281383.1| - 1.4e-05 24.6 0.0 6e-05 22.7 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|433591887|ref|YP_007281383.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Cupin FA_desaturase PF00487.24 gi|433591888|ref|YP_007281384.1| - 0.37 10.6 5.3 0.42 10.4 5.3 1.0 1 0 0 1 1 1 0 Fatty acid desaturase Usp PF00582.26 gi|433591889|ref|YP_007281385.1| - 1.1e-37 129.7 0.8 1.2e-37 129.5 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|433591889|ref|YP_007281385.1| - 0.05 13.5 1.0 2.5 8.0 1.0 2.2 1 1 0 1 1 1 0 Electron transfer flavoprotein domain SSF PF00474.17 gi|433591890|ref|YP_007281386.1| - 2.1e-53 181.7 33.0 3.1e-53 181.1 33.0 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF4212 PF13937.6 gi|433591891|ref|YP_007281387.1| - 1.5e-21 76.6 0.8 1.9e-21 76.2 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) AMP-binding PF00501.28 gi|433591892|ref|YP_007281388.1| - 3.4e-91 306.0 0.1 4e-91 305.7 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433591892|ref|YP_007281388.1| - 1.5e-19 70.8 0.9 3.1e-19 69.7 0.9 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|433591892|ref|YP_007281388.1| - 1.5e-13 50.4 2.4 1.5e-13 50.4 2.4 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus BAT PF15915.5 gi|433591893|ref|YP_007281389.1| - 9.9e-47 158.7 7.1 9.9e-47 158.7 7.1 2.9 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|433591893|ref|YP_007281389.1| - 5.8e-18 64.4 0.0 1.2e-17 63.5 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.7 gi|433591893|ref|YP_007281389.1| - 3.3e-12 46.6 0.0 7.7e-12 45.4 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|433591893|ref|YP_007281389.1| - 3.5e-11 43.3 0.8 1.6e-10 41.2 0.8 2.2 1 0 0 1 1 1 1 PAS fold Phage_integrase PF00589.22 gi|433591893|ref|YP_007281389.1| - 1.4e-10 41.2 0.0 5.9e-10 39.2 0.0 1.9 2 0 0 2 2 2 1 Phage integrase family PAS PF00989.25 gi|433591893|ref|YP_007281389.1| - 1.1e-08 35.0 0.0 3.2e-08 33.5 0.0 1.8 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 gi|433591893|ref|YP_007281389.1| - 1.1e-06 29.0 0.7 5.3e-06 26.8 0.1 2.6 2 1 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|433591893|ref|YP_007281389.1| - 7.1e-06 26.4 0.0 0.00011 22.5 0.0 2.5 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|433591893|ref|YP_007281389.1| - 0.0045 17.6 0.0 0.055 14.1 0.0 2.4 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.12 gi|433591893|ref|YP_007281389.1| - 0.0096 16.2 0.0 0.029 14.7 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|433591893|ref|YP_007281389.1| - 0.019 15.0 0.0 0.085 12.9 0.0 2.1 1 0 0 1 1 1 0 PAS domain Sigma70_r4 PF04545.16 gi|433591893|ref|YP_007281389.1| - 0.031 13.8 0.0 0.082 12.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|433591893|ref|YP_007281389.1| - 0.044 13.9 0.1 0.19 11.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain PAS_10 PF13596.6 gi|433591893|ref|YP_007281389.1| - 0.093 13.3 0.0 0.24 12.0 0.0 1.7 1 0 0 1 1 1 0 PAS domain AMP-binding PF00501.28 gi|433591894|ref|YP_007281390.1| - 5.6e-96 321.7 0.0 6.6e-96 321.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433591894|ref|YP_007281390.1| - 8.1e-18 65.2 0.2 1.8e-17 64.1 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|433591894|ref|YP_007281390.1| - 1e-13 51.0 0.9 1e-13 51.0 0.9 2.0 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus Usp PF00582.26 gi|433591895|ref|YP_007281391.1| - 1.7e-10 41.5 0.5 2.1e-10 41.3 0.5 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|433591895|ref|YP_007281391.1| - 0.015 15.2 0.3 0.44 10.4 0.1 2.1 2 0 0 2 2 2 0 Electron transfer flavoprotein domain Usp PF00582.26 gi|433591896|ref|YP_007281392.1| - 6e-32 111.1 2.1 6.9e-32 110.9 2.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Sugar-bind PF04198.13 gi|433591896|ref|YP_007281392.1| - 0.096 11.8 0.1 0.22 10.6 0.0 1.5 2 0 0 2 2 2 0 Putative sugar-binding domain DFRP_C PF16543.5 gi|433591897|ref|YP_007281393.1| - 0.064 13.7 2.0 0.065 13.7 2.0 1.0 1 0 0 1 1 1 0 DRG Family Regulatory Proteins, Tma46 TOBE PF03459.17 gi|433591899|ref|YP_007281395.1| - 4.7e-13 49.2 0.7 4.7e-13 49.2 0.7 3.0 3 1 0 3 3 3 1 TOBE domain HTH_1 PF00126.27 gi|433591899|ref|YP_007281395.1| - 4.9e-09 36.0 0.2 4.9e-09 36.0 0.2 2.4 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family ABC_tran PF00005.27 gi|433591900|ref|YP_007281396.1| - 3.2e-31 108.7 0.0 4.9e-31 108.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433591900|ref|YP_007281396.1| - 4e-10 40.0 0.2 3.5e-05 23.8 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|433591900|ref|YP_007281396.1| - 1.3e-05 25.7 3.9 4.2e-05 24.0 3.9 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|433591900|ref|YP_007281396.1| - 0.002 18.4 0.0 0.011 16.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|433591900|ref|YP_007281396.1| - 0.0036 16.8 0.0 0.15 11.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|433591900|ref|YP_007281396.1| - 0.004 17.4 0.3 0.093 13.0 0.3 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|433591900|ref|YP_007281396.1| - 0.014 15.1 0.7 0.15 11.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|433591900|ref|YP_007281396.1| - 0.018 15.2 0.7 0.063 13.4 0.2 2.1 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|433591900|ref|YP_007281396.1| - 0.027 14.2 0.1 0.05 13.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|433591900|ref|YP_007281396.1| - 0.05 13.9 0.1 3.2 8.1 0.1 2.2 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|433591900|ref|YP_007281396.1| - 0.075 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|433591900|ref|YP_007281396.1| - 0.085 12.4 2.2 0.43 10.1 2.0 2.2 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|433591900|ref|YP_007281396.1| - 0.1 12.5 0.1 2.5 8.0 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.17 gi|433591900|ref|YP_007281396.1| - 0.13 12.0 0.0 3.6 7.3 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|433591900|ref|YP_007281396.1| - 0.2 10.8 0.0 1.2 8.3 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain BPD_transp_1 PF00528.22 gi|433591901|ref|YP_007281397.1| - 2.1e-13 50.4 7.5 2.1e-13 50.4 7.5 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component CbtB PF09489.10 gi|433591901|ref|YP_007281397.1| - 1.3 9.2 8.1 3.6 7.8 0.6 3.6 3 0 0 3 3 3 0 Probable cobalt transporter subunit (CbtB) PBP_like_2 PF12849.7 gi|433591902|ref|YP_007281398.1| - 3.3e-27 95.9 0.3 4.1e-27 95.6 0.3 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|433591902|ref|YP_007281398.1| - 6.1e-08 32.7 0.0 8.8e-06 25.6 0.1 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|433591902|ref|YP_007281398.1| - 0.0014 17.8 0.1 0.0025 17.0 0.1 1.3 1 0 0 1 1 1 1 PBP superfamily domain LysR_substrate PF03466.20 gi|433591902|ref|YP_007281398.1| - 0.041 13.2 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain Phosphonate-bd PF12974.7 gi|433591902|ref|YP_007281398.1| - 0.052 13.1 0.0 10 5.6 0.0 2.6 2 1 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.9 gi|433591902|ref|YP_007281398.1| - 0.36 10.8 3.8 0.67 9.9 1.6 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence SpoIIIAH PF12685.7 gi|433591904|ref|YP_007281400.1| - 0.62 9.9 11.6 0.82 9.5 11.6 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein DUF913 PF06025.12 gi|433591904|ref|YP_007281400.1| - 0.62 9.0 2.5 0.71 8.8 2.5 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) Rick_17kDa_Anti PF05433.15 gi|433591905|ref|YP_007281401.1| - 0.077 12.9 3.8 0.11 12.4 3.8 1.2 1 0 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.6 gi|433591905|ref|YP_007281401.1| - 0.087 12.8 3.2 0.13 12.2 3.2 1.3 1 0 0 1 1 1 0 Glycine zipper Zip PF02535.22 gi|433591905|ref|YP_007281401.1| - 0.39 9.9 5.8 0.43 9.7 5.8 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter SDA1 PF05285.12 gi|433591905|ref|YP_007281401.1| - 0.49 9.8 33.1 0.51 9.7 33.1 1.2 1 0 0 1 1 1 0 SDA1 Pns11_12 PF17464.2 gi|433591905|ref|YP_007281401.1| - 0.62 9.7 8.6 0.78 9.4 8.6 1.2 1 0 0 1 1 1 0 Non-structural protein 11 and 12 Hid1 PF12722.7 gi|433591905|ref|YP_007281401.1| - 1.2 7.2 9.8 1 7.4 9.8 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Lin-8 PF03353.15 gi|433591905|ref|YP_007281401.1| - 2.4 7.7 12.3 2.7 7.5 12.3 1.3 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist SAPS PF04499.15 gi|433591905|ref|YP_007281401.1| - 3.6 6.2 14.0 3.5 6.3 14.0 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Nop14 PF04147.12 gi|433591905|ref|YP_007281401.1| - 4.1 5.5 32.5 5.1 5.2 32.5 1.2 1 0 0 1 1 1 0 Nop14-like family PQQ PF01011.21 gi|433591907|ref|YP_007281403.1| - 4.2e-11 42.2 4.1 1.2e-05 25.0 0.2 5.5 5 0 0 5 5 5 3 PQQ enzyme repeat PQQ_2 PF13360.6 gi|433591907|ref|YP_007281403.1| - 1.1e-10 41.5 15.2 6.6e-06 25.9 5.1 3.4 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|433591907|ref|YP_007281403.1| - 1.6e-06 28.4 36.1 1.1 9.8 0.3 9.0 7 3 1 8 8 8 6 PQQ-like domain DUF3209 PF11483.8 gi|433591908|ref|YP_007281404.1| - 3.2e-53 179.4 1.6 3.5e-53 179.3 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) APG6_N PF17675.1 gi|433591908|ref|YP_007281404.1| - 0.073 13.6 1.8 0.096 13.2 1.8 1.3 1 1 0 1 1 1 0 Apg6 coiled-coil region DUF2278 PF10042.9 gi|433591908|ref|YP_007281404.1| - 0.078 13.0 0.0 0.099 12.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2278) DUF4844 PF16133.5 gi|433591908|ref|YP_007281404.1| - 0.17 12.5 0.0 0.22 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4844) CbiX PF01903.17 gi|433591909|ref|YP_007281405.1| - 3.2e-43 146.4 0.0 1.1e-20 74.0 0.2 2.5 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.19 gi|433591909|ref|YP_007281405.1| - 1.9e-07 31.0 0.1 3.3e-07 30.3 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.11 gi|433591909|ref|YP_007281405.1| - 0.00036 19.9 0.0 0.71 9.1 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.12 gi|433591909|ref|YP_007281405.1| - 0.0011 18.9 0.0 0.0078 16.1 0.0 2.1 1 1 1 2 2 2 1 Sucrase/ferredoxin-like ETF_alpha PF00766.19 gi|433591909|ref|YP_007281405.1| - 0.02 14.9 0.0 5.3 7.1 0.0 3.0 2 1 1 3 3 3 0 Electron transfer flavoprotein FAD-binding domain SpdB PF05122.13 gi|433591909|ref|YP_007281405.1| - 0.086 13.0 0.3 0.26 11.4 0.3 1.8 1 0 0 1 1 1 0 Mobile element transfer protein Ribosomal_L12_N PF16320.5 gi|433591909|ref|YP_007281405.1| - 3.2 7.5 4.6 5.8 6.7 0.2 2.7 3 0 0 3 3 3 0 Ribosomal protein L7/L12 dimerisation domain Fer4_15 PF13459.6 gi|433591911|ref|YP_007281407.1| - 2.2e-18 66.7 8.2 2.7e-18 66.5 8.2 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|433591911|ref|YP_007281407.1| - 0.0019 18.7 5.5 0.0038 17.7 5.5 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_19 PF06902.11 gi|433591911|ref|YP_007281407.1| - 0.034 14.2 0.4 5.9 7.1 0.0 2.3 1 1 1 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.7 gi|433591911|ref|YP_007281407.1| - 1.4 9.1 7.2 8 6.7 0.1 3.5 4 0 0 4 4 4 0 4Fe-4S binding domain TP_methylase PF00590.20 gi|433591912|ref|YP_007281408.1| - 1e-38 133.4 0.2 1.3e-38 133.1 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Macoilin PF09726.9 gi|433591912|ref|YP_007281408.1| - 0.068 11.7 5.7 0.073 11.6 5.7 1.1 1 0 0 1 1 1 0 Macoilin family Apt1 PF10351.9 gi|433591912|ref|YP_007281408.1| - 0.15 10.9 5.4 0.17 10.7 5.4 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain TP_methylase PF00590.20 gi|433591913|ref|YP_007281409.1| - 2.4e-44 151.8 0.1 3.1e-44 151.5 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|433591914|ref|YP_007281410.1| - 2.6e-27 94.6 0.0 8.8e-27 92.9 0.0 2.0 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|433591914|ref|YP_007281410.1| - 6.5e-22 78.3 0.2 1.4e-21 77.2 0.0 1.7 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.24 gi|433591914|ref|YP_007281410.1| - 0.00024 21.7 0.3 0.00085 19.9 0.3 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TP_methylase PF00590.20 gi|433591915|ref|YP_007281411.1| - 4.9e-39 134.5 0.1 6.2e-39 134.1 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|433591915|ref|YP_007281411.1| - 0.005 17.2 0.1 0.0097 16.3 0.1 1.5 1 1 0 1 1 1 1 Radical SAM superfamily PhoU_div PF01865.16 gi|433591915|ref|YP_007281411.1| - 0.032 13.6 0.1 2.2 7.5 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function DUF47 TP_methylase PF00590.20 gi|433591916|ref|YP_007281412.1| - 2.7e-37 128.8 0.6 4.2e-37 128.2 0.6 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_25 PF13649.6 gi|433591917|ref|YP_007281413.1| - 0.0001 22.9 0.1 0.00017 22.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433591917|ref|YP_007281413.1| - 0.00047 20.8 0.1 0.001 19.6 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|433591917|ref|YP_007281413.1| - 0.023 14.4 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GATase_3 PF07685.14 gi|433591917|ref|YP_007281413.1| - 0.031 13.9 0.0 0.051 13.2 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Methyltransf_16 PF10294.9 gi|433591917|ref|YP_007281413.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase MTS PF05175.14 gi|433591917|ref|YP_007281413.1| - 0.12 11.9 0.1 0.25 10.8 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase small domain adh_short_C2 PF13561.6 gi|433591918|ref|YP_007281414.1| - 6e-66 222.3 0.1 7.2e-66 222.1 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433591918|ref|YP_007281414.1| - 1.9e-59 200.4 0.1 2.3e-59 200.1 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433591918|ref|YP_007281414.1| - 3e-22 79.4 0.0 3.8e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433591918|ref|YP_007281414.1| - 0.0025 17.3 0.1 0.0035 16.8 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Cloacin_immun PF03513.14 gi|433591918|ref|YP_007281414.1| - 0.084 13.2 0.0 0.25 11.7 0.0 1.7 2 0 0 2 2 2 0 Cloacin immunity protein GATase_3 PF07685.14 gi|433591919|ref|YP_007281415.1| - 7.4e-32 110.5 0.0 9.5e-32 110.2 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|433591919|ref|YP_007281415.1| - 1.4e-10 41.3 0.0 2.5e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|433591919|ref|YP_007281415.1| - 3.7e-09 36.7 0.0 4.3e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain CTP_synth_N PF06418.14 gi|433591919|ref|YP_007281415.1| - 0.0091 15.3 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus SNO PF01174.19 gi|433591919|ref|YP_007281415.1| - 0.019 14.8 0.0 0.035 13.9 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family PRK PF00485.18 gi|433591919|ref|YP_007281415.1| - 0.16 11.7 0.0 0.51 10.1 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF1802 PF08819.11 gi|433591920|ref|YP_007281416.1| - 1.1e-41 142.6 0.0 1.3e-41 142.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1802) RuvA_C PF07499.13 gi|433591921|ref|YP_007281417.1| - 0.056 13.9 0.0 0.42 11.1 0.0 2.0 2 0 0 2 2 2 0 RuvA, C-terminal domain PEMT PF04191.13 gi|433591922|ref|YP_007281418.1| - 2.9e-16 59.8 0.8 4.9e-16 59.0 0.8 1.4 1 0 0 1 1 1 1 Phospholipid methyltransferase ICMT PF04140.14 gi|433591922|ref|YP_007281418.1| - 1.4e-15 57.5 0.0 2e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1295 PF06966.12 gi|433591922|ref|YP_007281418.1| - 7.4e-05 22.4 0.0 0.00011 21.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) ERG4_ERG24 PF01222.17 gi|433591922|ref|YP_007281418.1| - 0.044 12.6 0.0 0.1 11.3 0.0 1.6 1 1 0 1 1 1 0 Ergosterol biosynthesis ERG4/ERG24 family TP_methylase PF00590.20 gi|433591923|ref|YP_007281419.1| - 3.4e-37 128.5 1.4 4e-37 128.2 1.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.15 gi|433591924|ref|YP_007281420.1| - 1.3e-50 171.8 0.5 1.5e-50 171.6 0.5 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase DUF3531 PF12049.8 gi|433591924|ref|YP_007281420.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3531) CobN-Mg_chel PF02514.16 gi|433591925|ref|YP_007281421.1| - 0 1245.2 0.0 0 1245.0 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|433591925|ref|YP_007281421.1| - 0.0057 16.4 0.0 0.016 15.0 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain AAA_lid_2 PF17863.1 gi|433591926|ref|YP_007281422.1| - 1.6e-21 75.9 3.3 6.8e-21 73.9 0.6 2.8 2 0 0 2 2 2 1 AAA lid domain Mg_chelatase PF01078.21 gi|433591926|ref|YP_007281422.1| - 4.7e-13 49.0 0.1 1.1e-08 34.7 0.0 2.7 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI VWA_2 PF13519.6 gi|433591926|ref|YP_007281422.1| - 6.1e-13 49.4 0.0 1.4e-12 48.2 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|433591926|ref|YP_007281422.1| - 2.9e-11 43.9 0.0 4.5e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|433591926|ref|YP_007281422.1| - 6.8e-08 32.6 0.0 0.00033 20.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|433591926|ref|YP_007281422.1| - 2.8e-06 26.6 0.0 0.00011 21.3 0.0 2.4 2 0 0 2 2 2 1 MCM P-loop domain AAA_16 PF13191.6 gi|433591926|ref|YP_007281422.1| - 0.0052 17.2 2.7 0.069 13.5 0.4 3.3 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|433591926|ref|YP_007281422.1| - 0.0065 16.2 0.0 0.26 11.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_22 PF13401.6 gi|433591926|ref|YP_007281422.1| - 0.021 15.1 0.1 0.47 10.7 0.0 3.1 4 1 0 4 4 4 0 AAA domain Mg_chelatase_C PF13335.6 gi|433591926|ref|YP_007281422.1| - 0.17 12.5 2.1 0.26 11.9 0.5 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI C-terminal Xan_ur_permease PF00860.20 gi|433591927|ref|YP_007281423.1| - 1.9e-74 250.7 40.6 4.9e-74 249.4 40.6 1.6 1 1 0 1 1 1 1 Permease family Abhydrolase_6 PF12697.7 gi|433591928|ref|YP_007281424.1| - 4.9e-21 76.4 5.0 5.7e-21 76.1 5.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|433591928|ref|YP_007281424.1| - 6.6e-21 75.1 0.0 1.6e-19 70.6 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|433591928|ref|YP_007281424.1| - 1.5e-16 60.4 0.0 1.9e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 MaoC_dehydratas PF01575.19 gi|433591929|ref|YP_007281425.1| - 3.1e-20 72.0 0.0 4.8e-20 71.4 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|433591929|ref|YP_007281425.1| - 2.9e-05 24.2 0.1 0.00015 21.9 0.0 2.2 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|433591929|ref|YP_007281425.1| - 0.00098 19.4 0.5 0.022 15.1 0.1 2.3 2 0 0 2 2 2 1 Thioesterase superfamily PQQ_3 PF13570.6 gi|433591930|ref|YP_007281426.1| - 3.2e-46 154.7 31.9 2.2e-11 43.9 3.5 8.5 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|433591930|ref|YP_007281426.1| - 3e-44 151.4 6.8 2.9e-18 66.3 0.3 3.3 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|433591930|ref|YP_007281426.1| - 8.5e-39 129.7 17.1 5.9e-09 35.4 0.3 8.0 8 0 0 8 8 8 6 PQQ enzyme repeat Cytochrom_D1 PF02239.16 gi|433591930|ref|YP_007281426.1| - 0.045 12.3 0.0 0.069 11.7 0.0 1.2 1 0 0 1 1 1 0 Cytochrome D1 heme domain TAT_signal PF10518.9 gi|433591930|ref|YP_007281426.1| - 0.14 12.0 3.8 0.29 11.0 3.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PepSY PF03413.19 gi|433591930|ref|YP_007281426.1| - 1.1 9.8 6.1 50 4.5 0.0 4.3 5 0 0 5 5 5 0 Peptidase propeptide and YPEB domain SbcCD_C PF13558.6 gi|433591933|ref|YP_007281429.1| - 2.8e-05 24.3 0.0 7e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit TMPIT PF07851.13 gi|433591933|ref|YP_007281429.1| - 4.6e-05 22.8 4.7 4.6e-05 22.8 4.7 3.1 2 1 1 3 3 3 1 TMPIT-like protein COG2 PF06148.11 gi|433591933|ref|YP_007281429.1| - 6.1e-05 23.1 21.7 0.0021 18.2 1.1 4.1 2 2 1 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 DUF1664 PF07889.12 gi|433591933|ref|YP_007281429.1| - 6.1e-05 23.1 27.2 0.00043 20.3 2.1 4.1 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) STAT_alpha PF01017.20 gi|433591933|ref|YP_007281429.1| - 0.00014 21.8 22.4 0.0028 17.6 7.7 2.8 2 1 0 2 2 2 2 STAT protein, all-alpha domain DUF3584 PF12128.8 gi|433591933|ref|YP_007281429.1| - 0.0002 19.1 7.7 0.0002 19.1 7.7 2.3 3 0 0 3 3 3 2 Protein of unknown function (DUF3584) Spc7 PF08317.11 gi|433591933|ref|YP_007281429.1| - 0.00047 19.1 39.4 0.0083 15.0 16.8 3.0 2 1 0 2 2 2 2 Spc7 kinetochore protein Phage_GP20 PF06810.11 gi|433591933|ref|YP_007281429.1| - 0.0022 17.8 30.6 0.0049 16.7 4.8 3.9 3 1 0 3 3 3 2 Phage minor structural protein GP20 Golgin_A5 PF09787.9 gi|433591933|ref|YP_007281429.1| - 0.0024 17.4 36.3 0.0082 15.6 8.8 2.7 2 1 0 2 2 2 1 Golgin subfamily A member 5 Prefoldin_2 PF01920.20 gi|433591933|ref|YP_007281429.1| - 0.0048 16.8 2.2 0.0048 16.8 2.2 5.9 3 2 2 5 5 4 1 Prefoldin subunit zf-Di19 PF05605.12 gi|433591933|ref|YP_007281429.1| - 0.011 16.0 0.5 3 8.2 0.0 2.4 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding NPV_P10 PF05531.12 gi|433591933|ref|YP_007281429.1| - 0.031 14.7 23.0 0.069 13.6 1.8 4.6 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein FtsK_SpoIIIE PF01580.18 gi|433591933|ref|YP_007281429.1| - 0.064 12.6 0.7 0.79 9.0 0.0 2.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family Cluap1 PF10234.9 gi|433591933|ref|YP_007281429.1| - 0.096 12.1 38.0 0.049 13.0 8.0 3.7 2 2 2 4 4 4 0 Clusterin-associated protein-1 Laminin_II PF06009.12 gi|433591933|ref|YP_007281429.1| - 0.1 12.6 26.8 0.5 10.4 5.7 4.1 2 2 2 4 4 4 0 Laminin Domain II Exonuc_VII_L PF02601.15 gi|433591933|ref|YP_007281429.1| - 0.1 12.1 19.0 0.95 9.0 7.0 2.3 2 0 0 2 2 2 0 Exonuclease VII, large subunit DUF3450 PF11932.8 gi|433591933|ref|YP_007281429.1| - 0.11 11.8 32.6 0.21 10.9 4.0 4.1 3 1 1 4 4 4 0 Protein of unknown function (DUF3450) Atg14 PF10186.9 gi|433591933|ref|YP_007281429.1| - 0.12 11.4 28.0 0.61 9.1 7.5 2.7 2 2 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4407 PF14362.6 gi|433591933|ref|YP_007281429.1| - 0.17 11.2 20.7 0.3 10.4 4.6 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) 5_nucleotid PF05761.14 gi|433591933|ref|YP_007281429.1| - 0.24 10.2 15.7 3 6.6 0.7 3.2 3 0 0 3 3 3 0 5' nucleotidase family Cast PF10174.9 gi|433591933|ref|YP_007281429.1| - 0.26 9.5 35.3 0.026 12.8 14.3 2.1 2 0 0 2 2 2 0 RIM-binding protein of the cytomatrix active zone Vps39_2 PF10367.9 gi|433591933|ref|YP_007281429.1| - 0.28 11.7 2.1 0.42 11.1 0.2 2.4 2 0 0 2 2 1 0 Vacuolar sorting protein 39 domain 2 DUF812 PF05667.11 gi|433591933|ref|YP_007281429.1| - 0.3 9.9 34.7 7.8 5.2 22.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF812) ATG16 PF08614.11 gi|433591933|ref|YP_007281429.1| - 0.35 11.1 43.5 0.19 11.9 6.8 4.2 2 2 2 4 4 4 0 Autophagy protein 16 (ATG16) V-SNARE PF05008.15 gi|433591933|ref|YP_007281429.1| - 0.37 11.2 26.5 0.41 11.1 4.1 4.4 4 0 0 4 4 4 0 Vesicle transport v-SNARE protein N-terminus DUF1359 PF07097.11 gi|433591933|ref|YP_007281429.1| - 0.43 10.8 9.6 3 8.1 0.5 3.4 3 1 0 3 3 2 0 Protein of unknown function (DUF1359) DUF932 PF06067.11 gi|433591933|ref|YP_007281429.1| - 0.55 10.0 6.1 0.32 10.7 1.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF932) Seryl_tRNA_N PF02403.22 gi|433591933|ref|YP_007281429.1| - 0.84 9.9 33.1 1.2 9.4 8.1 4.3 3 1 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain GAS PF13851.6 gi|433591933|ref|YP_007281429.1| - 1.1 8.5 40.5 0.052 12.9 13.5 3.5 2 2 0 3 3 3 0 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.9 gi|433591933|ref|YP_007281429.1| - 1.2 9.1 51.3 0.3 11.1 6.7 4.3 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fib_alpha PF08702.10 gi|433591933|ref|YP_007281429.1| - 1.4 9.1 31.4 0.11 12.6 2.7 4.0 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family DivIC PF04977.15 gi|433591933|ref|YP_007281429.1| - 1.4 8.8 37.2 1.1 9.1 3.6 6.1 4 2 2 6 6 6 0 Septum formation initiator TPR_MLP1_2 PF07926.12 gi|433591933|ref|YP_007281429.1| - 1.4 9.0 34.2 3.1 7.9 1.4 4.6 3 1 2 5 5 5 0 TPR/MLP1/MLP2-like protein DEAD PF00270.29 gi|433591933|ref|YP_007281429.1| - 1.7 8.4 6.3 0.9 9.3 0.1 3.3 3 2 1 4 4 3 0 DEAD/DEAH box helicase Spc24 PF08286.11 gi|433591933|ref|YP_007281429.1| - 1.8 8.8 34.0 0.97 9.7 2.8 5.0 3 1 0 3 3 2 0 Spc24 subunit of Ndc80 Swi5 PF07061.11 gi|433591933|ref|YP_007281429.1| - 2.1 8.5 25.0 1.1 9.4 1.1 4.9 3 1 0 3 3 3 0 Swi5 DUF948 PF06103.11 gi|433591933|ref|YP_007281429.1| - 2.2 8.6 13.8 0.27 11.5 0.2 3.7 3 1 0 3 3 2 0 Bacterial protein of unknown function (DUF948) MAD PF05557.13 gi|433591933|ref|YP_007281429.1| - 2.5 6.3 43.1 0.099 11.0 16.1 2.4 2 1 0 2 2 2 0 Mitotic checkpoint protein Nup88 PF10168.9 gi|433591933|ref|YP_007281429.1| - 3 5.6 24.2 0.077 10.8 5.0 3.2 3 0 0 3 3 3 0 Nuclear pore component LPP PF04728.13 gi|433591933|ref|YP_007281429.1| - 3.5 8.1 14.9 8.4 6.9 0.3 5.0 4 1 1 5 5 3 0 Lipoprotein leucine-zipper HrpB7 PF09486.10 gi|433591933|ref|YP_007281429.1| - 3.5 8.0 17.7 3.2 8.1 0.7 3.5 3 0 0 3 3 3 0 Bacterial type III secretion protein (HrpB7) FUSC PF04632.12 gi|433591933|ref|YP_007281429.1| - 3.9 5.9 3.5 18 3.7 1.2 2.1 2 0 0 2 2 2 0 Fusaric acid resistance protein family DUF883 PF05957.13 gi|433591933|ref|YP_007281429.1| - 4 8.1 15.8 5 7.8 0.3 4.1 4 0 0 4 4 3 0 Bacterial protein of unknown function (DUF883) Fez1 PF06818.15 gi|433591933|ref|YP_007281429.1| - 4.3 7.7 33.9 33 4.9 16.7 2.7 1 1 1 2 2 2 0 Fez1 CENP-H PF05837.12 gi|433591933|ref|YP_007281429.1| - 5.6 7.4 34.8 8.9 6.8 2.8 4.1 2 2 1 3 3 3 0 Centromere protein H (CENP-H) Dzip-like_N PF13815.6 gi|433591933|ref|YP_007281429.1| - 5.7 6.9 16.8 3.3 7.7 1.4 4.1 3 1 0 3 3 3 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal KfrA_N PF11740.8 gi|433591933|ref|YP_007281429.1| - 8.1 7.2 12.5 22 5.7 1.9 3.8 2 2 1 3 3 3 0 Plasmid replication region DNA-binding N-term RB_A PF01858.17 gi|433591933|ref|YP_007281429.1| - 8.5 6.2 9.3 17 5.2 0.0 3.7 3 1 1 4 4 4 0 Retinoblastoma-associated protein A domain Sec34 PF04136.15 gi|433591933|ref|YP_007281429.1| - 9.4 6.1 27.3 1.6 8.6 1.2 4.2 2 2 2 4 4 4 0 Sec34-like family DUF3644 PF12358.8 gi|433591934|ref|YP_007281430.1| - 0.03 14.8 0.2 0.083 13.4 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3644) zf-C2H2_8 PF15909.5 gi|433591935|ref|YP_007281431.1| - 0.075 13.3 0.0 0.19 12.0 0.0 1.7 2 0 0 2 2 2 0 C2H2-type zinc ribbon UbiA PF01040.18 gi|433591939|ref|YP_007281435.1| - 1.1e-43 149.4 18.2 1.3e-43 149.1 18.2 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF835 PF05763.12 gi|433591940|ref|YP_007281436.1| - 6.5e-05 22.7 0.0 8.8e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) PAXNEB PF05625.11 gi|433591940|ref|YP_007281436.1| - 0.00017 20.8 0.0 0.00018 20.8 0.0 1.1 1 0 0 1 1 1 1 PAXNEB protein ATPase PF06745.13 gi|433591940|ref|YP_007281436.1| - 0.00033 20.1 0.0 0.00098 18.5 0.0 1.6 1 1 0 1 1 1 1 KaiC DUF1477 PF07346.11 gi|433591940|ref|YP_007281436.1| - 0.023 15.0 0.3 0.076 13.3 0.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1477) CoA_binding_2 PF13380.6 gi|433591941|ref|YP_007281437.1| - 5.5e-39 133.2 0.1 6.5e-39 133.0 0.1 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|433591941|ref|YP_007281437.1| - 4.1e-07 30.6 0.0 6.3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|433591941|ref|YP_007281437.1| - 0.031 15.1 0.0 0.091 13.6 0.0 1.8 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF169 PF02596.15 gi|433591941|ref|YP_007281437.1| - 0.11 12.4 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised ArCR, COG2043 PALP PF00291.25 gi|433591943|ref|YP_007281439.1| - 2.8e-63 214.1 1.6 3e-63 214.0 1.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme FIST PF08495.10 gi|433591943|ref|YP_007281439.1| - 0.0019 18.3 0.1 0.14 12.2 0.0 2.3 2 0 0 2 2 2 2 FIST N domain DUF3798 PF12683.7 gi|433591943|ref|YP_007281439.1| - 0.14 11.6 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) HAP1_N PF04849.13 gi|433591944|ref|YP_007281440.1| - 0.0012 18.1 3.3 0.0015 17.8 3.3 1.1 1 0 0 1 1 1 1 HAP1 N-terminal conserved region DUF1465 PF07323.12 gi|433591944|ref|YP_007281440.1| - 0.0062 16.4 0.3 0.0062 16.4 0.3 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1465) DUF1664 PF07889.12 gi|433591944|ref|YP_007281440.1| - 0.0086 16.1 0.5 0.013 15.5 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|433591944|ref|YP_007281440.1| - 0.0095 16.2 0.4 0.016 15.5 0.4 1.4 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4988 PF16378.5 gi|433591944|ref|YP_007281440.1| - 0.021 14.5 0.2 0.025 14.3 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function Herpes_UL6 PF01763.16 gi|433591944|ref|YP_007281440.1| - 0.021 13.3 0.9 0.024 13.2 0.9 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like AAA_13 PF13166.6 gi|433591944|ref|YP_007281440.1| - 0.034 12.8 2.3 0.027 13.1 1.2 1.3 1 1 0 1 1 1 0 AAA domain NPV_P10 PF05531.12 gi|433591944|ref|YP_007281440.1| - 0.05 14.1 0.2 0.073 13.5 0.2 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein LUC7 PF03194.15 gi|433591944|ref|YP_007281440.1| - 0.055 13.1 4.9 0.07 12.8 4.9 1.1 1 0 0 1 1 1 0 LUC7 N_terminus NBD94 PF16830.5 gi|433591944|ref|YP_007281440.1| - 0.057 13.8 0.5 0.08 13.3 0.5 1.2 1 0 0 1 1 1 0 Nucleotide-Binding Domain 94 of RH PspB PF06667.12 gi|433591944|ref|YP_007281440.1| - 0.06 13.4 0.1 0.13 12.3 0.1 1.6 1 0 0 1 1 1 0 Phage shock protein B Tropomyosin PF00261.20 gi|433591944|ref|YP_007281440.1| - 0.062 12.7 11.1 0.14 11.5 11.1 1.5 1 1 0 1 1 1 0 Tropomyosin Spc24 PF08286.11 gi|433591944|ref|YP_007281440.1| - 0.08 13.2 4.3 0.15 12.3 4.4 1.6 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Tho2 PF11262.8 gi|433591944|ref|YP_007281440.1| - 0.09 12.0 0.5 0.088 12.0 0.5 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 YabA PF06156.13 gi|433591944|ref|YP_007281440.1| - 0.21 12.3 1.7 0.33 11.6 1.7 1.4 1 1 0 1 1 1 0 Initiation control protein YabA TMPIT PF07851.13 gi|433591944|ref|YP_007281440.1| - 0.24 10.6 0.3 0.33 10.1 0.3 1.1 1 0 0 1 1 1 0 TMPIT-like protein Fmp27_WPPW PF10359.9 gi|433591944|ref|YP_007281440.1| - 0.26 10.1 2.9 0.32 9.8 2.9 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain SlyX PF04102.12 gi|433591944|ref|YP_007281440.1| - 0.72 10.5 7.9 0.6 10.8 4.8 2.3 1 1 1 2 2 2 0 SlyX V_ATPase_I PF01496.19 gi|433591944|ref|YP_007281440.1| - 1.2 6.9 3.6 1.4 6.8 3.6 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Packaging_FI PF14000.6 gi|433591944|ref|YP_007281440.1| - 4 7.9 12.1 5.4 7.5 0.5 2.1 1 1 0 2 2 2 0 DNA packaging protein FI NAD_synthase PF02540.17 gi|433591945|ref|YP_007281441.1| - 1.3e-45 155.4 0.0 1.5e-45 155.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase HTH_31 PF13560.6 gi|433591945|ref|YP_007281441.1| - 2.8 8.3 10.0 4.9 7.6 0.2 3.4 3 1 0 3 3 3 0 Helix-turn-helix domain MucB_RseB PF03888.14 gi|433591947|ref|YP_007281443.1| - 5.5e-05 22.8 1.5 0.00089 18.9 0.9 2.5 2 1 0 2 2 2 1 MucB/RseB N-terminal domain LolA_like PF17131.4 gi|433591947|ref|YP_007281443.1| - 0.00025 20.8 1.7 0.0028 17.4 1.1 2.9 1 1 1 2 2 2 1 Outer membrane lipoprotein-sorting protein DUF1571 PF07608.11 gi|433591947|ref|YP_007281443.1| - 0.0011 18.4 0.1 0.0017 17.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1571) DUF2092 PF09865.9 gi|433591947|ref|YP_007281443.1| - 0.0018 17.6 0.0 0.073 12.4 0.0 2.2 1 1 0 1 1 1 1 Predicted periplasmic protein (DUF2092) MS_channel PF00924.18 gi|433591948|ref|YP_007281444.1| - 2.5e-48 164.3 0.0 3.4e-48 163.9 0.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF3382 PF11862.8 gi|433591948|ref|YP_007281444.1| - 0.034 14.4 2.1 0.068 13.5 2.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3382) CRS1_YhbY PF01985.21 gi|433591949|ref|YP_007281445.1| - 7.6e-14 51.6 0.0 8.8e-14 51.4 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain DUF3168 PF11367.8 gi|433591949|ref|YP_007281445.1| - 0.041 14.1 2.6 0.15 12.3 2.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3168) Rpr2 PF04032.16 gi|433591950|ref|YP_007281446.1| - 5e-12 46.0 0.0 6.3e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain SBP_bac_5 PF00496.22 gi|433591951|ref|YP_007281447.1| - 1.9e-47 162.1 0.0 3.8e-42 144.6 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|433591951|ref|YP_007281447.1| - 0.00021 21.0 4.3 0.00046 19.9 4.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|433591951|ref|YP_007281447.1| - 0.042 13.2 0.5 0.13 11.6 0.5 1.9 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PAP2_3 PF14378.6 gi|433591952|ref|YP_007281448.1| - 8.8e-17 61.4 12.2 8.8e-17 61.4 12.2 1.6 2 1 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|433591952|ref|YP_007281448.1| - 4.5e-13 49.1 3.4 4.5e-13 49.1 3.4 2.2 1 1 1 2 2 2 1 PAP2 superfamily DUF4870 PF09685.10 gi|433591952|ref|YP_007281448.1| - 0.028 14.5 0.2 0.028 14.5 0.2 2.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4870) DUF2070 PF09843.9 gi|433591952|ref|YP_007281448.1| - 0.15 10.3 18.0 0.3 9.3 17.2 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) SBP_bac_5 PF00496.22 gi|433591953|ref|YP_007281449.1| - 1.7e-41 142.4 0.0 2.9e-39 135.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle XPB_DRD PF18458.1 gi|433591953|ref|YP_007281449.1| - 5.9 6.8 6.0 3.4 7.6 0.1 3.3 3 0 0 3 3 3 0 Xeroderma pigmentosum group B helicase damage recognition domain DUF2797 PF10977.8 gi|433591955|ref|YP_007281451.1| - 3.5e-30 105.6 6.1 6.9e-25 88.3 2.0 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF2797) Pectate_lyase_3 PF12708.7 gi|433591957|ref|YP_007281453.1| - 6.8e-13 49.0 0.5 4.3e-10 39.8 0.0 2.7 1 1 0 2 2 2 2 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|433591957|ref|YP_007281453.1| - 2.4e-09 37.2 2.2 1.9e-05 24.6 0.1 2.2 1 1 1 2 2 2 2 Right handed beta helix region Glyco_hydro_28 PF00295.17 gi|433591957|ref|YP_007281453.1| - 0.0059 15.7 0.1 2.5 7.1 0.2 2.7 2 1 0 3 3 3 2 Glycosyl hydrolases family 28 BsuPI PF12690.7 gi|433591958|ref|YP_007281454.1| - 1e-32 112.1 0.0 1.1e-32 112.0 0.0 1.0 1 0 0 1 1 1 1 Intracellular proteinase inhibitor CARDB PF07705.11 gi|433591958|ref|YP_007281454.1| - 0.0043 17.3 0.0 0.0061 16.8 0.0 1.3 1 1 0 1 1 1 1 CARDB DUF11 PF01345.18 gi|433591958|ref|YP_007281454.1| - 0.0053 17.0 0.0 0.011 16.0 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF11 Collagen_bind_2 PF12904.7 gi|433591958|ref|YP_007281454.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Putative collagen-binding domain of a collagenase CbiX PF01903.17 gi|433591959|ref|YP_007281455.1| - 2.9e-43 146.6 0.4 3e-21 75.7 0.0 2.6 3 0 0 3 3 3 2 CbiX CbiK PF06180.11 gi|433591959|ref|YP_007281455.1| - 1.6e-07 31.0 0.1 0.00059 19.2 0.1 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) YflT PF11181.8 gi|433591959|ref|YP_007281455.1| - 0.017 15.7 0.4 11 6.6 0.2 2.8 2 1 0 2 2 2 0 Heat induced stress protein YflT LTV PF04180.14 gi|433591959|ref|YP_007281455.1| - 0.027 14.2 0.6 0.14 11.9 0.0 1.9 1 1 0 2 2 2 0 Low temperature viability protein Branch PF02485.21 gi|433591959|ref|YP_007281455.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Core-2/I-Branching enzyme DR2241 PF18069.1 gi|433591960|ref|YP_007281456.1| - 9.5e-46 154.2 0.4 9.5e-46 154.2 0.4 2.5 3 0 0 3 3 3 1 DR2241 stabilising domain Fer4_23 PF18009.1 gi|433591960|ref|YP_007281456.1| - 4.2e-33 113.6 0.4 8.5e-33 112.6 0.4 1.5 1 0 0 1 1 1 1 4Fe-4S iron-sulfur cluster binding domain Trm112p PF03966.16 gi|433591962|ref|YP_007281458.1| - 1.5e-10 41.5 2.2 3.3e-10 40.4 2.2 1.6 1 1 0 1 1 1 1 Trm112p-like protein zinc_ribbon_2 PF13240.6 gi|433591962|ref|YP_007281458.1| - 0.023 14.4 0.1 0.05 13.3 0.1 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF1451 PF07295.11 gi|433591962|ref|YP_007281458.1| - 0.11 12.5 0.1 0.11 12.5 0.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain Adenylsucc_synt PF00709.21 gi|433591963|ref|YP_007281459.1| - 1.1e-155 518.7 0.1 1.3e-155 518.5 0.1 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase HTH_12 PF08461.10 gi|433591964|ref|YP_007281460.1| - 0.009 15.9 0.1 0.016 15.1 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.6 gi|433591964|ref|YP_007281460.1| - 0.011 15.3 0.4 0.021 14.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|433591964|ref|YP_007281460.1| - 0.017 15.0 0.2 0.045 13.6 0.1 1.7 1 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|433591964|ref|YP_007281460.1| - 0.024 14.5 0.1 0.056 13.3 0.1 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.10 gi|433591964|ref|YP_007281460.1| - 0.026 14.5 0.0 0.046 13.7 0.0 1.5 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF977 PF06163.11 gi|433591964|ref|YP_007281460.1| - 0.1 12.6 0.0 0.16 11.9 0.0 1.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF977) CLZ PF16526.5 gi|433591964|ref|YP_007281460.1| - 0.29 11.5 3.6 5.7 7.4 0.2 2.1 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ZapB PF06005.12 gi|433591965|ref|YP_007281461.1| - 0.0002 21.7 7.3 0.00058 20.2 7.3 1.8 1 0 0 1 1 1 1 Cell division protein ZapB DUF3450 PF11932.8 gi|433591965|ref|YP_007281461.1| - 0.00032 20.1 4.3 0.00075 18.9 4.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) CENP-F_leu_zip PF10473.9 gi|433591965|ref|YP_007281461.1| - 0.00062 19.8 4.0 0.0017 18.4 4.0 1.7 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2205 PF10224.9 gi|433591965|ref|YP_007281461.1| - 0.00096 19.1 1.0 0.0047 16.9 1.2 2.0 2 0 0 2 2 1 1 Short coiled-coil protein ATG16 PF08614.11 gi|433591965|ref|YP_007281461.1| - 0.0022 18.3 16.7 0.0022 18.3 16.7 2.5 2 1 0 2 2 1 1 Autophagy protein 16 (ATG16) bZIP_1 PF00170.21 gi|433591965|ref|YP_007281461.1| - 0.0029 17.7 3.2 0.017 15.2 3.3 2.1 1 1 0 1 1 1 1 bZIP transcription factor Spc7 PF08317.11 gi|433591965|ref|YP_007281461.1| - 0.0035 16.3 5.0 0.0078 15.1 5.0 1.5 1 0 0 1 1 1 1 Spc7 kinetochore protein SKA2 PF16740.5 gi|433591965|ref|YP_007281461.1| - 0.0037 17.0 2.6 0.017 14.9 2.0 2.1 1 1 1 2 2 2 1 Spindle and kinetochore-associated protein 2 Tropomyosin PF00261.20 gi|433591965|ref|YP_007281461.1| - 0.0042 16.5 9.8 0.012 15.1 9.8 1.8 1 0 0 1 1 1 1 Tropomyosin CEP63 PF17045.5 gi|433591965|ref|YP_007281461.1| - 0.0045 16.9 3.3 0.0074 16.2 3.3 1.2 1 0 0 1 1 1 1 Centrosomal protein of 63 kDa DUF4686 PF15742.5 gi|433591965|ref|YP_007281461.1| - 0.0054 15.9 3.5 0.008 15.4 3.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4686) YabA PF06156.13 gi|433591965|ref|YP_007281461.1| - 0.0067 17.0 2.1 0.026 15.2 1.8 2.0 2 0 0 2 2 1 1 Initiation control protein YabA FPP PF05911.11 gi|433591965|ref|YP_007281461.1| - 0.0069 14.6 3.9 0.01 14.1 3.9 1.2 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil CCDC106 PF15794.5 gi|433591965|ref|YP_007281461.1| - 0.0071 16.1 6.6 0.0071 16.1 6.6 2.8 2 1 1 3 3 1 1 Coiled-coil domain-containing protein 106 KASH_CCD PF14662.6 gi|433591965|ref|YP_007281461.1| - 0.0087 15.9 4.1 0.015 15.1 4.1 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH CLZ PF16526.5 gi|433591965|ref|YP_007281461.1| - 0.0091 16.3 7.1 0.62 10.5 2.5 2.7 1 1 1 2 2 2 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Tropomyosin_1 PF12718.7 gi|433591965|ref|YP_007281461.1| - 0.011 15.9 8.6 0.011 15.9 8.6 2.3 3 0 0 3 3 1 0 Tropomyosin like SHE3 PF17078.5 gi|433591965|ref|YP_007281461.1| - 0.013 15.2 2.7 0.013 15.2 2.7 1.6 2 0 0 2 2 1 0 SWI5-dependent HO expression protein 3 HALZ PF02183.18 gi|433591965|ref|YP_007281461.1| - 0.016 15.4 2.1 0.042 14.1 0.6 2.2 1 1 1 2 2 2 0 Homeobox associated leucine zipper GAS PF13851.6 gi|433591965|ref|YP_007281461.1| - 0.016 14.6 1.4 0.034 13.5 1.4 1.5 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Syntaxin-6_N PF09177.11 gi|433591965|ref|YP_007281461.1| - 0.016 15.7 4.9 6.2 7.4 5.1 2.7 2 0 0 2 2 2 0 Syntaxin 6, N-terminal DUF3552 PF12072.8 gi|433591965|ref|YP_007281461.1| - 0.016 14.6 3.3 0.03 13.7 3.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DUF812 PF05667.11 gi|433591965|ref|YP_007281461.1| - 0.018 14.0 10.1 0.028 13.3 10.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) JIP_LZII PF16471.5 gi|433591965|ref|YP_007281461.1| - 0.026 14.7 6.7 0.022 14.9 4.8 1.8 1 1 0 1 1 1 0 JNK-interacting protein leucine zipper II Taxilin PF09728.9 gi|433591965|ref|YP_007281461.1| - 0.028 13.6 3.5 0.041 13.1 3.5 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Atg14 PF10186.9 gi|433591965|ref|YP_007281461.1| - 0.039 13.0 3.1 0.06 12.4 3.1 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 HOOK PF05622.12 gi|433591965|ref|YP_007281461.1| - 0.04 12.1 3.1 0.06 11.5 3.1 1.1 1 0 0 1 1 1 0 HOOK protein Sec34 PF04136.15 gi|433591965|ref|YP_007281461.1| - 0.053 13.4 0.8 0.1 12.5 0.8 1.4 1 0 0 1 1 1 0 Sec34-like family UPF0242 PF06785.11 gi|433591965|ref|YP_007281461.1| - 0.06 13.4 2.6 0.11 12.5 2.6 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF1664 PF07889.12 gi|433591965|ref|YP_007281461.1| - 0.06 13.4 0.3 0.12 12.4 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) HAUS-augmin3 PF14932.6 gi|433591965|ref|YP_007281461.1| - 0.068 12.8 5.0 0.2 11.2 5.0 1.7 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF4201 PF13870.6 gi|433591965|ref|YP_007281461.1| - 0.073 12.8 3.4 0.23 11.2 3.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) DUF4094 PF13334.6 gi|433591965|ref|YP_007281461.1| - 0.079 13.4 1.7 0.17 12.4 1.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) DHR10 PF18595.1 gi|433591965|ref|YP_007281461.1| - 0.079 13.0 9.6 0.26 11.3 9.6 1.9 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain FlaC_arch PF05377.11 gi|433591965|ref|YP_007281461.1| - 0.08 13.3 1.6 0.23 11.9 0.9 2.2 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) BRE1 PF08647.11 gi|433591965|ref|YP_007281461.1| - 0.082 13.0 1.4 0.23 11.6 1.4 1.6 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase TMF_DNA_bd PF12329.8 gi|433591965|ref|YP_007281461.1| - 0.1 12.6 8.1 1.3 9.1 8.1 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Spectrin PF00435.21 gi|433591965|ref|YP_007281461.1| - 0.1 13.1 3.4 0.24 11.9 2.4 2.1 2 0 0 2 2 1 0 Spectrin repeat Rab5-bind PF09311.11 gi|433591965|ref|YP_007281461.1| - 0.11 11.9 3.8 0.18 11.2 3.8 1.2 1 0 0 1 1 1 0 Rabaptin-like protein Prefoldin_2 PF01920.20 gi|433591965|ref|YP_007281461.1| - 0.11 12.4 6.3 5.3 7.1 2.8 2.9 2 1 1 3 3 2 0 Prefoldin subunit CENP-K PF11802.8 gi|433591965|ref|YP_007281461.1| - 0.12 12.0 1.6 0.39 10.3 0.2 2.0 2 0 0 2 2 2 0 Centromere-associated protein K FTA4 PF13093.6 gi|433591965|ref|YP_007281461.1| - 0.12 12.2 2.0 0.22 11.4 2.0 1.4 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 APG6_N PF17675.1 gi|433591965|ref|YP_007281461.1| - 0.12 12.9 11.1 0.057 13.9 7.7 2.2 2 0 0 2 2 1 0 Apg6 coiled-coil region Troponin PF00992.20 gi|433591965|ref|YP_007281461.1| - 0.13 12.6 7.0 0.24 11.7 7.0 1.3 1 0 0 1 1 1 0 Troponin DUF724 PF05266.14 gi|433591965|ref|YP_007281461.1| - 0.14 12.0 2.4 0.25 11.1 2.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Golgin_A5 PF09787.9 gi|433591965|ref|YP_007281461.1| - 0.15 11.5 4.0 0.27 10.7 4.0 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 TMPIT PF07851.13 gi|433591965|ref|YP_007281461.1| - 0.17 11.1 1.3 0.26 10.5 1.3 1.1 1 0 0 1 1 1 0 TMPIT-like protein HMMR_N PF15905.5 gi|433591965|ref|YP_007281461.1| - 0.18 11.3 4.5 0.33 10.4 4.5 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal THOC7 PF05615.13 gi|433591965|ref|YP_007281461.1| - 0.18 12.1 8.5 0.062 13.6 4.8 2.1 3 0 0 3 3 1 0 Tho complex subunit 7 DivIC PF04977.15 gi|433591965|ref|YP_007281461.1| - 0.18 11.6 6.3 0.53 10.1 4.8 2.3 1 1 1 2 2 2 0 Septum formation initiator TMCO5 PF14992.6 gi|433591965|ref|YP_007281461.1| - 0.19 11.3 2.0 0.31 10.6 2.0 1.2 1 0 0 1 1 1 0 TMCO5 family BLOC1_2 PF10046.9 gi|433591965|ref|YP_007281461.1| - 0.22 11.9 2.8 0.37 11.1 1.7 1.9 2 0 0 2 2 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin PF00804.25 gi|433591965|ref|YP_007281461.1| - 0.25 11.0 2.7 0.45 10.1 2.7 1.4 1 0 0 1 1 1 0 Syntaxin KLRAQ PF10205.9 gi|433591965|ref|YP_007281461.1| - 0.28 11.4 1.7 0.58 10.4 1.7 1.4 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein bZIP_2 PF07716.15 gi|433591965|ref|YP_007281461.1| - 0.28 11.3 6.8 5.2 7.2 2.0 2.7 1 1 1 2 2 2 0 Basic region leucine zipper EMP24_GP25L PF01105.24 gi|433591965|ref|YP_007281461.1| - 0.31 11.0 0.9 0.63 10.0 0.9 1.5 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Herpes_UL25 PF01499.16 gi|433591965|ref|YP_007281461.1| - 0.34 9.4 5.3 0.8 8.1 5.3 1.6 1 0 0 1 1 1 0 Herpesvirus UL25 family DUF1690 PF07956.11 gi|433591965|ref|YP_007281461.1| - 0.34 11.3 6.1 1.1 9.7 6.1 1.8 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) Cnn_1N PF07989.11 gi|433591965|ref|YP_007281461.1| - 0.45 10.7 3.4 1 9.6 3.4 1.6 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 Csm1_N PF18504.1 gi|433591965|ref|YP_007281461.1| - 0.57 10.6 6.2 3.4 8.1 1.1 2.7 1 1 1 2 2 2 0 Csm1 N-terminal domain TolA_bind_tri PF16331.5 gi|433591965|ref|YP_007281461.1| - 0.63 10.2 5.5 1.3 9.1 5.5 1.6 1 0 0 1 1 1 0 TolA binding protein trimerisation Nup54 PF13874.6 gi|433591965|ref|YP_007281461.1| - 0.66 10.1 3.3 1.4 9.0 3.3 1.4 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 Fmp27_WPPW PF10359.9 gi|433591965|ref|YP_007281461.1| - 0.68 8.7 12.4 0.0079 15.1 4.2 1.8 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain ADIP PF11559.8 gi|433591965|ref|YP_007281461.1| - 0.76 9.8 7.7 1.3 9.1 6.3 1.8 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding ERM PF00769.19 gi|433591965|ref|YP_007281461.1| - 1 9.2 16.4 0.02 14.7 9.2 1.8 2 0 0 2 2 1 0 Ezrin/radixin/moesin family DUF641 PF04859.12 gi|433591965|ref|YP_007281461.1| - 1.1 9.6 5.9 2.5 8.4 1.8 2.3 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) DUF4482 PF14818.6 gi|433591965|ref|YP_007281461.1| - 1.4 9.8 6.0 1 10.2 0.4 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4482) CENP-H PF05837.12 gi|433591965|ref|YP_007281461.1| - 1.4 9.4 7.9 1.5 9.3 6.1 1.9 2 0 0 2 2 1 0 Centromere protein H (CENP-H) Cep57_CLD_2 PF14197.6 gi|433591965|ref|YP_007281461.1| - 1.4 9.0 17.1 0.081 13.0 11.3 1.9 2 0 0 2 2 1 0 Centrosome localisation domain of PPC89 Jnk-SapK_ap_N PF09744.9 gi|433591965|ref|YP_007281461.1| - 1.5 9.1 12.8 0.035 14.3 5.6 1.9 3 0 0 3 3 1 0 JNK_SAPK-associated protein-1 Spc24 PF08286.11 gi|433591965|ref|YP_007281461.1| - 2.6 8.3 7.2 3.3 8.0 3.6 2.4 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Fez1 PF06818.15 gi|433591965|ref|YP_007281461.1| - 4.5 7.7 10.5 0.48 10.8 5.7 1.8 2 0 0 2 2 1 0 Fez1 FAM76 PF16046.5 gi|433591965|ref|YP_007281461.1| - 5.4 6.3 7.0 9 5.6 7.0 1.2 1 0 0 1 1 1 0 FAM76 protein PspB PF06667.12 gi|433591965|ref|YP_007281461.1| - 5.6 7.1 6.1 18 5.5 1.9 2.5 1 1 1 2 2 2 0 Phage shock protein B DUF5082 PF16888.5 gi|433591965|ref|YP_007281461.1| - 6.5 7.1 7.4 3.3 8.0 1.4 2.6 2 1 1 3 3 2 0 Domain of unknown function (DUF5082) Nnf1 PF03980.14 gi|433591965|ref|YP_007281461.1| - 7.3 7.0 9.9 23 5.4 6.1 3.1 2 1 0 2 2 2 0 Nnf1 SlyX PF04102.12 gi|433591965|ref|YP_007281461.1| - 7.3 7.3 8.5 11 6.7 6.7 2.3 2 1 0 2 2 1 0 SlyX UPF0058 PF01893.16 gi|433591966|ref|YP_007281462.1| - 2.9e-34 117.2 0.8 3.2e-34 117.1 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 T7SS_ESX_EspC PF10824.8 gi|433591966|ref|YP_007281462.1| - 0.027 15.0 0.0 0.037 14.5 0.0 1.2 1 0 0 1 1 1 0 Excreted virulence factor EspC, type VII ESX diderm DUF998 PF06197.13 gi|433591967|ref|YP_007281463.1| - 1.2e-15 57.6 32.0 1.4e-15 57.4 32.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) ABC_tran PF00005.27 gi|433591968|ref|YP_007281464.1| - 1.8e-33 115.9 0.0 2.9e-33 115.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|433591968|ref|YP_007281464.1| - 8.3e-11 41.9 1.3 1.6e-10 41.0 0.3 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|433591968|ref|YP_007281464.1| - 1.2e-05 25.3 0.2 0.14 11.9 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|433591968|ref|YP_007281464.1| - 0.00087 19.7 0.1 0.0017 18.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|433591968|ref|YP_007281464.1| - 0.0014 18.8 0.0 0.0039 17.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|433591968|ref|YP_007281464.1| - 0.0015 18.5 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|433591968|ref|YP_007281464.1| - 0.0089 16.3 0.7 0.031 14.6 0.7 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|433591968|ref|YP_007281464.1| - 0.036 14.5 0.0 0.1 13.0 0.1 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|433591968|ref|YP_007281464.1| - 0.051 13.8 0.3 0.37 11.1 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|433591968|ref|YP_007281464.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|433591970|ref|YP_007281466.1| - 2.2e-50 171.2 0.0 3.5e-50 170.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein T2SSF PF00482.23 gi|433591971|ref|YP_007281467.1| - 4.7e-41 139.7 7.5 3.9e-20 72.1 1.4 2.9 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F Peripla_BP_3 PF13377.6 gi|433591971|ref|YP_007281467.1| - 0.019 15.3 0.2 0.15 12.4 0.0 2.4 2 0 0 2 2 2 0 Periplasmic binding protein-like domain DUF2207 PF09972.9 gi|433591971|ref|YP_007281467.1| - 0.16 10.7 0.5 6.3 5.4 0.0 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2207) Ribosomal_S13_N PF08069.12 gi|433591972|ref|YP_007281468.1| - 7.4e-24 83.6 0.2 1.2e-23 82.9 0.2 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|433591972|ref|YP_007281468.1| - 3.2e-14 52.9 0.4 5.4e-14 52.2 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 DUF4298 PF14131.6 gi|433591972|ref|YP_007281468.1| - 0.1 12.6 1.1 0.18 11.8 0.8 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4298) Methyltransf_22 PF13383.6 gi|433591972|ref|YP_007281468.1| - 0.13 11.8 0.1 0.19 11.3 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase domain Gastrin PF00918.17 gi|433591973|ref|YP_007281469.1| - 0.17 12.9 0.0 0.92 10.5 0.0 2.1 2 0 0 2 2 2 0 Gastrin/cholecystokinin family Pcc1 PF09341.10 gi|433591974|ref|YP_007281470.1| - 0.049 13.8 1.0 0.074 13.2 1.0 1.3 1 0 0 1 1 1 0 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.18 gi|433591975|ref|YP_007281471.1| - 8.7e-61 205.0 0.2 1e-60 204.8 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family ABM PF03992.16 gi|433591976|ref|YP_007281472.1| - 4.2e-14 52.4 0.4 5.1e-14 52.1 0.4 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Copper-bind PF00127.20 gi|433591977|ref|YP_007281473.1| - 1.8e-11 44.4 0.1 3.8e-11 43.3 0.1 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|433591977|ref|YP_007281473.1| - 0.0011 19.1 0.0 1.2 9.3 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain CDP-OH_P_transf PF01066.21 gi|433591978|ref|YP_007281474.1| - 2.5e-10 40.9 3.8 2.5e-10 40.9 3.8 2.7 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase CCB1 PF12046.8 gi|433591978|ref|YP_007281474.1| - 0.11 11.8 0.2 0.8 9.0 0.2 2.3 1 1 0 1 1 1 0 Cofactor assembly of complex C subunit B HEAT_2 PF13646.6 gi|433591979|ref|YP_007281475.1| - 1.2e-16 60.8 12.2 2.8e-12 46.9 7.5 3.2 3 1 1 4 4 4 2 HEAT repeats HEAT_PBS PF03130.16 gi|433591979|ref|YP_007281475.1| - 4.3e-15 54.8 9.6 1.1e-05 25.6 0.7 5.5 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|433591979|ref|YP_007281475.1| - 7.4e-07 28.9 0.5 0.065 13.5 0.1 3.5 3 0 0 3 3 3 2 HEAT repeat HEAT_EZ PF13513.6 gi|433591979|ref|YP_007281475.1| - 0.00036 21.0 6.0 0.049 14.1 0.3 3.8 2 1 1 3 3 3 2 HEAT-like repeat Arm PF00514.23 gi|433591979|ref|YP_007281475.1| - 0.004 17.1 0.3 1.2 9.3 0.1 3.2 1 1 2 3 3 3 1 Armadillo/beta-catenin-like repeat FTA4 PF13093.6 gi|433591979|ref|YP_007281475.1| - 0.057 13.3 7.5 0.087 12.7 5.3 2.5 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 NPV_P10 PF05531.12 gi|433591979|ref|YP_007281475.1| - 0.34 11.4 6.4 6.4 7.3 0.1 4.0 3 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|433591979|ref|YP_007281475.1| - 0.76 8.6 5.0 0.9 8.4 3.2 1.9 1 1 1 2 2 2 0 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|433591979|ref|YP_007281475.1| - 1.1 9.7 3.5 35 4.9 0.0 3.1 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) AATF-Che1 PF13339.6 gi|433591979|ref|YP_007281475.1| - 1.2 9.8 4.7 1 10.1 1.4 2.4 2 1 0 2 2 2 0 Apoptosis antagonizing transcription factor PLDc_2 PF13091.6 gi|433591980|ref|YP_007281476.1| - 1e-41 142.0 0.0 4e-25 88.3 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|433591980|ref|YP_007281476.1| - 1.1e-06 28.6 0.8 8.5e-06 25.7 0.2 2.5 2 0 0 2 2 2 1 Phospholipase D Active site motif FAM83 PF07894.12 gi|433591980|ref|YP_007281476.1| - 5e-05 23.0 0.0 0.045 13.3 0.0 2.2 2 0 0 2 2 2 2 FAM83 A-H Regulator_TrmB PF11495.8 gi|433591980|ref|YP_007281476.1| - 0.00015 21.0 0.3 0.22 10.7 0.0 2.5 2 0 0 2 2 2 2 Archaeal transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|433591981|ref|YP_007281477.1| - 9.5e-18 64.2 0.0 2e-17 63.1 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|433591981|ref|YP_007281477.1| - 2.8e-12 46.5 0.5 7e-12 45.3 0.3 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR PF01047.22 gi|433591981|ref|YP_007281477.1| - 0.00015 21.6 0.0 0.00028 20.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|433591981|ref|YP_007281477.1| - 0.00028 20.8 0.0 0.00046 20.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|433591981|ref|YP_007281477.1| - 0.00052 19.8 0.0 0.00097 19.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|433591981|ref|YP_007281477.1| - 0.0013 18.2 0.0 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|433591981|ref|YP_007281477.1| - 0.0018 18.1 0.0 0.003 17.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|433591981|ref|YP_007281477.1| - 0.0058 16.7 0.0 0.014 15.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|433591981|ref|YP_007281477.1| - 0.015 15.6 0.0 0.025 14.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_13 PF11972.8 gi|433591981|ref|YP_007281477.1| - 0.068 13.3 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_12 PF08461.10 gi|433591981|ref|YP_007281477.1| - 0.11 12.5 0.1 0.23 11.4 0.1 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Rio2_N PF09202.11 gi|433591981|ref|YP_007281477.1| - 0.12 12.6 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal GntR PF00392.21 gi|433591981|ref|YP_007281477.1| - 0.14 11.9 0.0 0.36 10.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|433591981|ref|YP_007281477.1| - 0.18 11.8 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain YkyA PF10368.9 gi|433591982|ref|YP_007281478.1| - 0.0046 16.6 4.5 0.0096 15.6 3.4 1.9 1 1 1 2 2 2 2 Putative cell-wall binding lipoprotein DUF4226 PF10774.9 gi|433591982|ref|YP_007281478.1| - 0.017 15.4 1.3 0.32 11.3 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) Rubrerythrin PF02915.17 gi|433591982|ref|YP_007281478.1| - 0.17 12.3 6.1 1.2 9.6 5.5 2.4 1 1 1 2 2 2 0 Rubrerythrin Ferritin_2 PF13668.6 gi|433591982|ref|YP_007281478.1| - 0.49 10.6 4.0 3 8.1 0.4 2.0 1 1 1 2 2 2 0 Ferritin-like domain UPF0051 PF01458.17 gi|433591983|ref|YP_007281479.1| - 9.4e-62 208.5 1.0 1.2e-61 208.2 1.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|433591984|ref|YP_007281480.1| - 4e-71 239.2 0.5 5.3e-71 238.8 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HWE_HK PF07536.14 gi|433591984|ref|YP_007281480.1| - 0.051 14.3 0.0 0.1 13.3 0.0 1.4 1 0 0 1 1 1 0 HWE histidine kinase ABC_tran PF00005.27 gi|433591985|ref|YP_007281481.1| - 1.9e-15 57.6 0.1 6.7e-15 55.8 0.1 1.8 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|433591985|ref|YP_007281481.1| - 9.9e-06 25.1 0.2 0.057 12.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|433591985|ref|YP_007281481.1| - 0.00012 22.0 0.4 0.2 11.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|433591985|ref|YP_007281481.1| - 0.00022 21.6 0.1 0.17 12.3 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|433591985|ref|YP_007281481.1| - 0.0011 19.0 0.4 1.6 8.7 0.1 2.8 1 1 1 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|433591985|ref|YP_007281481.1| - 0.0032 17.2 0.0 0.0062 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|433591985|ref|YP_007281481.1| - 0.02 14.9 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|433591985|ref|YP_007281481.1| - 0.026 15.1 0.2 0.078 13.5 0.0 2.0 2 2 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|433591985|ref|YP_007281481.1| - 0.027 14.7 0.1 1 9.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|433591985|ref|YP_007281481.1| - 0.065 13.4 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|433591985|ref|YP_007281481.1| - 0.071 13.6 3.9 0.32 11.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|433591985|ref|YP_007281481.1| - 0.11 12.9 0.2 1.2 9.5 0.2 2.2 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|433591985|ref|YP_007281481.1| - 0.11 12.2 0.2 0.24 11.1 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|433591985|ref|YP_007281481.1| - 0.12 12.6 0.0 0.76 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|433591985|ref|YP_007281481.1| - 0.12 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|433591985|ref|YP_007281481.1| - 0.15 12.0 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase DNA_pol_B PF00136.21 gi|433591986|ref|YP_007281482.1| - 2.9e-39 135.1 0.0 1.8e-21 76.4 0.0 2.2 2 0 0 2 2 2 2 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|433591986|ref|YP_007281482.1| - 2.1e-27 96.2 0.0 3.8e-27 95.3 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain Hint_2 PF13403.6 gi|433591986|ref|YP_007281482.1| - 6.5e-07 29.7 0.0 4.3e-06 27.1 0.0 2.0 1 1 0 1 1 1 1 Hint domain Hint PF01079.20 gi|433591986|ref|YP_007281482.1| - 2.4e-06 27.2 0.0 4.3e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Hint module LAGLIDADG_3 PF14528.6 gi|433591986|ref|YP_007281482.1| - 2.5e-06 27.7 0.1 8.5e-06 26.0 0.1 1.9 2 0 0 2 2 2 1 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|433591986|ref|YP_007281482.1| - 6.3e-06 26.2 0.0 3.8e-05 23.6 0.0 2.3 2 1 0 2 2 2 1 Intein splicing domain Hom_end PF05204.14 gi|433591986|ref|YP_007281482.1| - 0.038 14.2 0.0 0.068 13.3 0.0 1.4 1 0 0 1 1 1 0 Homing endonuclease DNA_pol_B_2 PF03175.13 gi|433591986|ref|YP_007281482.1| - 0.082 11.7 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral PT-HINT PF07591.11 gi|433591986|ref|YP_007281482.1| - 0.14 12.4 0.0 0.5 10.6 0.0 1.9 2 0 0 2 2 2 0 Pretoxin HINT domain CoA_transf_3 PF02515.17 gi|433591987|ref|YP_007281483.1| - 0.16 11.1 0.0 0.16 11.0 0.0 1.0 1 0 0 1 1 1 0 CoA-transferase family III TrbC PF04956.13 gi|433591988|ref|YP_007281484.1| - 0.064 13.5 2.6 0.12 12.6 2.6 1.4 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF202 PF02656.15 gi|433591988|ref|YP_007281484.1| - 0.37 11.3 3.0 0.63 10.5 3.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF202) AAA_23 PF13476.6 gi|433591990|ref|YP_007281486.1| - 1.2e-21 78.2 8.1 1.2e-21 78.2 8.1 6.4 1 1 2 3 3 2 1 AAA domain AAA_15 PF13175.6 gi|433591990|ref|YP_007281486.1| - 4.6e-16 59.5 0.0 5.6e-10 39.5 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.6 gi|433591990|ref|YP_007281486.1| - 5.6e-11 41.8 60.0 2.4e-07 29.8 7.0 5.0 2 1 3 5 5 5 4 AAA domain Spc7 PF08317.11 gi|433591990|ref|YP_007281486.1| - 6.6e-11 41.7 100.8 0.00027 19.9 24.2 5.5 2 2 3 5 5 5 4 Spc7 kinetochore protein AAA_21 PF13304.6 gi|433591990|ref|YP_007281486.1| - 6.9e-08 32.7 1.1 0.00075 19.4 2.6 4.3 3 2 1 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|433591990|ref|YP_007281486.1| - 2.1e-07 30.6 0.1 5.4e-07 29.3 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|433591990|ref|YP_007281486.1| - 2.1e-07 30.6 65.5 4.1e-06 26.4 65.5 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ATG16 PF08614.11 gi|433591990|ref|YP_007281486.1| - 4.8e-07 30.2 14.3 4.8e-07 30.2 14.3 5.6 2 2 3 5 5 5 1 Autophagy protein 16 (ATG16) AAA_27 PF13514.6 gi|433591990|ref|YP_007281486.1| - 1e-05 25.3 0.0 1e-05 25.3 0.0 6.6 5 3 2 7 7 7 1 AAA domain ABC_ATPase PF09818.9 gi|433591990|ref|YP_007281486.1| - 5.9e-05 22.0 4.9 0.019 13.8 0.1 2.8 3 0 0 3 3 3 2 Predicted ATPase of the ABC class DUF1664 PF07889.12 gi|433591990|ref|YP_007281486.1| - 0.00067 19.7 48.4 0.011 15.7 1.7 6.9 2 2 3 7 7 7 4 Protein of unknown function (DUF1664) GAS PF13851.6 gi|433591990|ref|YP_007281486.1| - 0.0011 18.3 5.2 0.0011 18.3 5.2 4.9 3 1 0 4 4 4 2 Growth-arrest specific micro-tubule binding DUF724 PF05266.14 gi|433591990|ref|YP_007281486.1| - 0.0063 16.4 7.1 0.0063 16.4 7.1 5.3 2 2 1 4 4 4 1 Protein of unknown function (DUF724) Laminin_II PF06009.12 gi|433591990|ref|YP_007281486.1| - 0.0074 16.3 52.2 1 9.4 8.3 7.0 3 2 2 6 6 6 3 Laminin Domain II Phage_GP20 PF06810.11 gi|433591990|ref|YP_007281486.1| - 0.0076 16.1 4.5 0.0076 16.1 4.5 7.4 2 2 5 7 7 6 1 Phage minor structural protein GP20 Laminin_I PF06008.14 gi|433591990|ref|YP_007281486.1| - 0.0089 15.8 2.8 0.0089 15.8 2.8 6.7 2 2 3 6 6 5 2 Laminin Domain I CENP-F_leu_zip PF10473.9 gi|433591990|ref|YP_007281486.1| - 0.01 15.9 105.8 0.61 10.1 11.7 6.5 2 2 4 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 SbcCD_C PF13558.6 gi|433591990|ref|YP_007281486.1| - 0.01 16.0 0.0 0.034 14.4 0.0 1.9 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF4407 PF14362.6 gi|433591990|ref|YP_007281486.1| - 0.012 14.9 91.2 0.017 14.5 10.4 5.1 1 1 3 5 5 5 0 Domain of unknown function (DUF4407) MukB PF04310.12 gi|433591990|ref|YP_007281486.1| - 0.013 15.3 0.7 0.069 12.9 0.0 2.6 2 0 0 2 2 2 0 MukB N-terminal DUF3584 PF12128.8 gi|433591990|ref|YP_007281486.1| - 0.014 13.0 104.6 0.049 11.2 26.1 4.9 2 1 2 5 5 5 0 Protein of unknown function (DUF3584) Viral_helicase1 PF01443.18 gi|433591990|ref|YP_007281486.1| - 0.038 13.7 0.0 0.09 12.5 0.0 1.6 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Atg14 PF10186.9 gi|433591990|ref|YP_007281486.1| - 0.044 12.9 66.9 0.2 10.7 14.9 5.2 1 1 1 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 ABC_tran PF00005.27 gi|433591990|ref|YP_007281486.1| - 0.047 14.2 0.0 0.047 14.2 0.0 5.1 2 2 1 4 4 3 0 ABC transporter NACHT PF05729.12 gi|433591990|ref|YP_007281486.1| - 0.066 13.1 0.0 0.18 11.7 0.0 1.8 1 0 0 1 1 1 0 NACHT domain Seryl_tRNA_N PF02403.22 gi|433591990|ref|YP_007281486.1| - 0.078 13.2 76.9 0.18 12.1 11.4 7.6 3 2 3 7 7 7 0 Seryl-tRNA synthetase N-terminal domain DNA_ligase_ZBD PF03119.16 gi|433591990|ref|YP_007281486.1| - 0.12 12.4 0.2 0.71 9.9 0.2 2.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain AAA_33 PF13671.6 gi|433591990|ref|YP_007281486.1| - 0.14 12.3 0.0 0.14 12.3 0.0 3.9 5 0 0 5 5 2 0 AAA domain AAA_22 PF13401.6 gi|433591990|ref|YP_007281486.1| - 0.15 12.3 0.1 0.15 12.3 0.1 3.8 2 1 1 3 3 3 0 AAA domain TPR_MLP1_2 PF07926.12 gi|433591990|ref|YP_007281486.1| - 0.67 10.0 102.4 2.3 8.3 5.4 7.7 2 2 4 8 8 8 0 TPR/MLP1/MLP2-like protein Mod_r PF07200.13 gi|433591990|ref|YP_007281486.1| - 1.5 8.9 68.2 0.039 14.0 5.8 6.4 3 2 4 7 7 7 0 Modifier of rudimentary (Mod(r)) protein DUF3450 PF11932.8 gi|433591990|ref|YP_007281486.1| - 3.7 6.8 87.8 0.016 14.5 10.2 7.6 2 2 6 8 8 8 0 Protein of unknown function (DUF3450) YabA PF06156.13 gi|433591990|ref|YP_007281486.1| - 5 7.8 60.7 0.84 10.3 4.0 7.0 4 4 4 8 8 8 0 Initiation control protein YabA FapA PF03961.13 gi|433591990|ref|YP_007281486.1| - 5.7 5.4 54.9 0.73 8.4 1.5 5.2 1 1 2 5 5 5 0 Flagellar Assembly Protein A TMPIT PF07851.13 gi|433591990|ref|YP_007281486.1| - 6.2 6.0 47.8 0.066 12.5 0.9 5.1 3 1 2 5 5 5 0 TMPIT-like protein Metallophos_2 PF12850.7 gi|433591991|ref|YP_007281487.1| - 1.5e-11 44.8 0.3 2.9e-11 43.8 0.3 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|433591991|ref|YP_007281487.1| - 4.7e-11 43.6 0.3 6.8e-11 43.1 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase HTH_24 PF13412.6 gi|433591993|ref|YP_007281489.1| - 3.7e-06 26.4 0.0 5.1e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|433591993|ref|YP_007281489.1| - 0.00076 19.1 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|433591993|ref|YP_007281489.1| - 0.0014 18.5 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|433591993|ref|YP_007281489.1| - 0.0057 16.5 0.0 0.0071 16.2 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|433591993|ref|YP_007281489.1| - 0.012 15.5 0.1 0.014 15.4 0.1 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain AAA PF00004.29 gi|433591994|ref|YP_007281490.1| - 1e-44 152.1 1.9 1.2e-44 151.9 0.1 2.1 3 0 0 3 3 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|433591994|ref|YP_007281490.1| - 1.9e-14 53.2 1.9 6.4e-14 51.5 1.9 2.0 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|433591994|ref|YP_007281490.1| - 7.3e-09 36.0 0.7 2e-08 34.5 0.0 2.2 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|433591994|ref|YP_007281490.1| - 7.7e-07 29.0 0.0 2.1e-06 27.6 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|433591994|ref|YP_007281490.1| - 1.2e-06 29.0 1.8 0.00037 20.9 0.0 3.2 2 1 1 3 3 3 1 AAA ATPase domain AAA_5 PF07728.14 gi|433591994|ref|YP_007281490.1| - 2.2e-06 27.7 0.4 3.3e-05 23.9 0.4 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|433591994|ref|YP_007281490.1| - 4.6e-06 27.0 0.3 0.00048 20.4 0.3 2.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|433591994|ref|YP_007281490.1| - 2.2e-05 24.9 3.2 0.024 15.1 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|433591994|ref|YP_007281490.1| - 5.5e-05 23.7 0.1 0.0031 18.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|433591994|ref|YP_007281490.1| - 0.00043 19.5 0.0 0.00098 18.4 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) GrpE PF01025.19 gi|433591994|ref|YP_007281490.1| - 0.00046 19.9 8.1 0.00046 19.9 8.1 2.2 2 0 0 2 2 2 1 GrpE Prot_ATP_ID_OB PF16450.5 gi|433591994|ref|YP_007281490.1| - 0.0009 19.2 1.1 0.0017 18.3 0.3 1.9 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain Mg_chelatase PF01078.21 gi|433591994|ref|YP_007281490.1| - 0.0013 18.1 0.2 0.0047 16.3 0.1 1.8 1 1 0 2 2 1 1 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|433591994|ref|YP_007281490.1| - 0.0023 18.0 0.3 0.016 15.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|433591994|ref|YP_007281490.1| - 0.0025 17.1 2.4 0.005 16.1 0.0 2.3 2 1 0 2 2 2 1 TIP49 P-loop domain Sigma54_activat PF00158.26 gi|433591994|ref|YP_007281490.1| - 0.0027 17.4 0.1 0.047 13.4 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|433591994|ref|YP_007281490.1| - 0.0041 16.9 0.0 0.012 15.4 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|433591994|ref|YP_007281490.1| - 0.005 17.2 0.0 0.013 15.8 0.0 1.8 1 0 0 1 1 1 1 RNA helicase AAA_33 PF13671.6 gi|433591994|ref|YP_007281490.1| - 0.0053 16.9 1.6 0.018 15.2 0.1 2.5 2 1 0 2 2 2 1 AAA domain Atg14 PF10186.9 gi|433591994|ref|YP_007281490.1| - 0.006 15.7 0.9 0.0085 15.2 0.9 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_24 PF13479.6 gi|433591994|ref|YP_007281490.1| - 0.0069 16.1 0.1 0.0069 16.1 0.1 2.5 3 1 0 3 3 3 1 AAA domain NACHT PF05729.12 gi|433591994|ref|YP_007281490.1| - 0.013 15.4 0.1 0.12 12.3 0.0 2.3 1 1 1 2 2 2 0 NACHT domain AAA_28 PF13521.6 gi|433591994|ref|YP_007281490.1| - 0.014 15.7 0.2 0.014 15.7 0.2 2.6 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|433591994|ref|YP_007281490.1| - 0.014 14.9 7.5 0.22 11.1 0.1 3.5 2 1 0 3 3 3 0 AAA domain GAS PF13851.6 gi|433591994|ref|YP_007281490.1| - 0.015 14.7 9.0 0.037 13.4 9.0 1.7 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding AAA_3 PF07726.11 gi|433591994|ref|YP_007281490.1| - 0.019 14.8 0.2 0.062 13.2 0.0 2.1 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|433591994|ref|YP_007281490.1| - 0.022 14.2 1.3 0.035 13.6 0.1 2.0 2 1 0 2 2 1 0 P-loop containing dynein motor region ATPase PF06745.13 gi|433591994|ref|YP_007281490.1| - 0.024 14.0 7.4 0.37 10.1 0.0 3.9 2 1 2 5 5 5 0 KaiC TsaE PF02367.17 gi|433591994|ref|YP_007281490.1| - 0.029 14.4 0.0 0.057 13.4 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ADIP PF11559.8 gi|433591994|ref|YP_007281490.1| - 0.029 14.4 6.8 0.075 13.1 6.8 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Parvo_NS1 PF01057.17 gi|433591994|ref|YP_007281490.1| - 0.03 13.4 0.0 0.059 12.4 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Fmp27_WPPW PF10359.9 gi|433591994|ref|YP_007281490.1| - 0.031 13.1 6.4 0.05 12.5 6.4 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain TniB PF05621.11 gi|433591994|ref|YP_007281490.1| - 0.032 13.6 0.0 1.6 8.1 0.0 2.7 1 1 1 2 2 2 0 Bacterial TniB protein CPT PF07931.12 gi|433591994|ref|YP_007281490.1| - 0.047 13.5 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein bZIP_1 PF00170.21 gi|433591994|ref|YP_007281490.1| - 0.078 13.1 13.5 0.19 11.8 2.7 2.9 1 1 1 2 2 2 0 bZIP transcription factor Sigma54_activ_2 PF14532.6 gi|433591994|ref|YP_007281490.1| - 0.11 12.6 0.1 0.41 10.8 0.0 2.0 2 0 0 2 2 1 0 Sigma-54 interaction domain DUF2334 PF10096.9 gi|433591994|ref|YP_007281490.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) ATPase_2 PF01637.18 gi|433591994|ref|YP_007281490.1| - 0.12 12.2 3.2 0.71 9.7 0.0 3.0 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|433591994|ref|YP_007281490.1| - 0.14 12.1 3.9 0.7 9.8 0.1 3.3 3 1 0 3 3 3 0 NTPase SHE3 PF17078.5 gi|433591994|ref|YP_007281490.1| - 0.15 11.8 8.5 0.28 10.9 8.5 1.4 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 ABC_tran PF00005.27 gi|433591994|ref|YP_007281490.1| - 0.23 12.0 4.1 0.37 11.3 0.0 2.7 2 1 0 2 2 1 0 ABC transporter DUF4241 PF14025.6 gi|433591994|ref|YP_007281490.1| - 0.43 10.9 2.2 2.5 8.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4241) Mgr1 PF08602.10 gi|433591994|ref|YP_007281490.1| - 0.46 9.2 2.7 0.79 8.5 2.7 1.3 1 0 0 1 1 1 0 Mgr1-like, i-AAA protease complex subunit DUF3987 PF13148.6 gi|433591994|ref|YP_007281490.1| - 0.64 9.0 7.6 1.8 7.5 6.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) Cep57_CLD_2 PF14197.6 gi|433591994|ref|YP_007281490.1| - 0.88 9.7 11.8 2.8 8.1 11.8 1.8 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 YabA PF06156.13 gi|433591994|ref|YP_007281490.1| - 0.93 10.2 8.7 93 3.7 9.1 2.9 2 1 0 2 2 2 0 Initiation control protein YabA DUF4407 PF14362.6 gi|433591994|ref|YP_007281490.1| - 1 8.7 8.3 0.28 10.5 4.9 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) AAA_11 PF13086.6 gi|433591994|ref|YP_007281490.1| - 1.1 9.0 9.3 0.53 10.0 0.1 2.4 1 1 2 3 3 3 0 AAA domain FlaC_arch PF05377.11 gi|433591994|ref|YP_007281490.1| - 2.4 8.6 8.0 13 6.3 0.9 3.5 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) APG6_N PF17675.1 gi|433591994|ref|YP_007281490.1| - 2.7 8.5 15.9 1.1 9.8 12.5 2.1 2 0 0 2 2 1 0 Apg6 coiled-coil region SlyX PF04102.12 gi|433591994|ref|YP_007281490.1| - 4.9 7.8 10.8 11 6.7 8.7 2.7 2 1 0 2 2 1 0 SlyX AAA_23 PF13476.6 gi|433591994|ref|YP_007281490.1| - 9.4 6.7 16.1 7.1 7.1 0.0 2.9 2 1 0 2 2 2 0 AAA domain polyprenyl_synt PF00348.17 gi|433591995|ref|YP_007281491.1| - 3.7e-56 190.0 0.0 4.4e-56 189.8 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Peptidase_M28 PF04389.17 gi|433591996|ref|YP_007281492.1| - 2.8e-35 121.8 0.1 4e-35 121.3 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|433591996|ref|YP_007281492.1| - 4.8e-13 48.9 0.0 1.4e-12 47.5 0.0 1.8 2 0 0 2 2 2 1 PA domain Peptidase_M20 PF01546.28 gi|433591996|ref|YP_007281492.1| - 7.7e-06 25.7 0.3 1.3e-05 25.0 0.3 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|433591996|ref|YP_007281492.1| - 1.6e-05 24.1 0.5 3.2e-05 23.1 0.4 1.4 1 1 0 1 1 1 1 M42 glutamyl aminopeptidase NAD_kinase PF01513.21 gi|433591997|ref|YP_007281493.1| - 1.9e-18 66.7 0.2 2.8e-18 66.1 0.2 1.2 1 0 0 1 1 1 1 ATP-NAD kinase Phage_Gp23 PF10669.9 gi|433591998|ref|YP_007281494.1| - 1.2 9.5 8.0 1.1 9.6 7.2 1.3 1 1 0 1 1 1 0 Protein gp23 (Bacteriophage A118) Spore_coat_CotO PF14153.6 gi|433591998|ref|YP_007281494.1| - 6.4 6.7 12.4 7 6.5 12.4 1.0 1 0 0 1 1 1 0 Spore coat protein CotO HhH-GPD PF00730.25 gi|433591999|ref|YP_007281495.1| - 1.4e-20 73.8 0.0 1.9e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|433591999|ref|YP_007281495.1| - 1.1e-09 37.7 0.0 2.9e-09 36.3 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|433591999|ref|YP_007281495.1| - 1.5e-06 28.4 2.8 2.8e-06 27.5 2.8 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|433591999|ref|YP_007281495.1| - 0.016 15.8 0.0 0.05 14.2 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|433591999|ref|YP_007281495.1| - 0.057 13.8 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|433591999|ref|YP_007281495.1| - 0.095 13.3 0.0 0.18 12.5 0.0 1.4 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold MDD_C PF18376.1 gi|433592000|ref|YP_007281496.1| - 3.5e-06 26.9 0.0 5.9e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|433592000|ref|YP_007281496.1| - 6.9e-05 23.0 6.7 0.00047 20.3 7.2 2.0 1 1 1 2 2 2 1 GHMP kinases N terminal domain HTH_24 PF13412.6 gi|433592001|ref|YP_007281497.1| - 6.1e-10 38.5 0.1 9.7e-10 37.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433592001|ref|YP_007281497.1| - 9e-09 35.0 2.4 1.8e-08 34.1 2.4 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|433592001|ref|YP_007281497.1| - 0.00036 20.5 0.1 0.00076 19.5 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433592001|ref|YP_007281497.1| - 0.0033 17.3 0.0 0.0071 16.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|433592001|ref|YP_007281497.1| - 0.004 17.6 0.0 0.0092 16.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|433592001|ref|YP_007281497.1| - 0.044 13.8 0.0 0.097 12.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|433592001|ref|YP_007281497.1| - 0.05 13.5 0.0 3.5 7.6 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|433592001|ref|YP_007281497.1| - 0.053 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|433592001|ref|YP_007281497.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|433592001|ref|YP_007281497.1| - 0.14 12.1 0.0 0.65 10.0 0.0 1.9 2 0 0 2 2 2 0 HTH domain HalOD1 PF18545.1 gi|433592002|ref|YP_007281498.1| - 2.6e-23 82.1 0.1 3.3e-23 81.7 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_31 PF13560.6 gi|433592002|ref|YP_007281498.1| - 0.094 13.1 0.8 0.16 12.3 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DCD PF06559.11 gi|433592002|ref|YP_007281498.1| - 0.2 10.4 0.0 0.22 10.3 0.0 1.0 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) XPG_I PF00867.18 gi|433592003|ref|YP_007281499.1| - 3.2e-22 78.7 0.0 6.1e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|433592003|ref|YP_007281499.1| - 8.2e-11 42.3 0.0 1.5e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|433592003|ref|YP_007281499.1| - 7.6e-05 23.2 0.0 0.00026 21.5 0.0 1.9 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.16 gi|433592003|ref|YP_007281499.1| - 0.018 14.9 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain HHH_5 PF14520.6 gi|433592003|ref|YP_007281499.1| - 0.11 13.1 0.0 0.32 11.6 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain PQQ_2 PF13360.6 gi|433592004|ref|YP_007281500.1| - 2.9e-21 76.1 19.6 1.5e-10 41.1 3.1 3.0 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|433592004|ref|YP_007281500.1| - 1.2e-06 28.1 10.2 2.5 8.2 0.1 7.0 6 1 1 7 7 7 3 PQQ enzyme repeat PQQ_3 PF13570.6 gi|433592004|ref|YP_007281500.1| - 5e-05 23.6 45.7 0.0019 18.6 0.3 8.5 8 1 0 8 8 8 5 PQQ-like domain DPM2 PF07297.12 gi|433592005|ref|YP_007281501.1| - 0.091 13.1 1.6 0.27 11.6 1.6 1.8 1 0 0 1 1 1 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) Acetyltransf_1 PF00583.25 gi|433592006|ref|YP_007281502.1| - 5.2e-09 36.3 0.0 8.9e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|433592006|ref|YP_007281502.1| - 0.00026 20.9 0.0 0.00036 20.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|433592006|ref|YP_007281502.1| - 0.0021 18.2 0.0 0.0035 17.4 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase YwhD PF08741.10 gi|433592006|ref|YP_007281502.1| - 0.0028 17.4 0.0 0.0039 16.9 0.0 1.1 1 0 0 1 1 1 1 YwhD family Acetyltransf_7 PF13508.7 gi|433592006|ref|YP_007281502.1| - 0.016 15.6 0.0 0.026 15.0 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_20 PF12840.7 gi|433592007|ref|YP_007281503.1| - 0.053 13.6 0.2 0.38 10.8 0.2 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|433592008|ref|YP_007281504.1| - 5.3e-20 71.1 0.0 1.7e-19 69.4 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|433592008|ref|YP_007281504.1| - 0.00039 20.4 0.0 0.0011 18.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433592008|ref|YP_007281504.1| - 0.0014 18.4 0.6 0.0051 16.7 0.1 2.1 2 0 0 2 2 2 1 MarR family Regulator_TrmB PF11495.8 gi|433592008|ref|YP_007281504.1| - 0.0016 17.6 0.0 0.0024 17.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB E2F_TDP PF02319.20 gi|433592008|ref|YP_007281504.1| - 0.003 17.6 0.0 0.0076 16.3 0.0 1.8 1 1 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain GntR PF00392.21 gi|433592008|ref|YP_007281504.1| - 0.0053 16.4 0.1 0.027 14.1 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|433592008|ref|YP_007281504.1| - 0.0077 16.0 0.2 0.025 14.4 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain Cdc6_C PF09079.11 gi|433592008|ref|YP_007281504.1| - 0.043 13.8 0.0 0.1 12.6 0.0 1.7 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain PadR PF03551.14 gi|433592008|ref|YP_007281504.1| - 0.07 13.1 0.0 0.33 10.9 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HalOD1 PF18545.1 gi|433592009|ref|YP_007281505.1| - 1.5e-16 60.4 0.9 1.9e-16 60.1 0.9 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 CSD PF00313.22 gi|433592010|ref|YP_007281506.1| - 4.1e-19 68.2 0.1 4.5e-19 68.1 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|433592010|ref|YP_007281506.1| - 0.021 14.5 2.5 0.028 14.1 2.5 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|433592010|ref|YP_007281506.1| - 0.16 11.9 1.1 0.24 11.3 1.1 1.5 1 1 0 1 1 1 0 S1-like PSII_BNR PF14870.6 gi|433592011|ref|YP_007281507.1| - 0.00054 19.3 8.7 0.31 10.2 0.4 4.1 1 1 3 4 4 4 2 Photosynthesis system II assembly factor YCF48 DUF4314 PF14192.6 gi|433592011|ref|YP_007281507.1| - 0.09 12.7 0.1 0.09 12.7 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4314) DUF4755 PF15947.5 gi|433592011|ref|YP_007281507.1| - 0.18 11.8 0.0 0.38 10.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4755) TAT_signal PF10518.9 gi|433592011|ref|YP_007281507.1| - 0.22 11.4 8.1 0.59 10.1 8.1 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BNR PF02012.20 gi|433592011|ref|YP_007281507.1| - 0.48 10.6 3.8 36 4.9 0.1 3.9 4 0 0 4 4 4 0 BNR/Asp-box repeat Methyltransf_25 PF13649.6 gi|433592012|ref|YP_007281508.1| - 1e-19 71.0 0.1 1.9e-19 70.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433592012|ref|YP_007281508.1| - 2e-19 70.0 0.1 3.2e-19 69.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433592012|ref|YP_007281508.1| - 3e-13 49.8 0.0 4.3e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433592012|ref|YP_007281508.1| - 1.4e-10 41.8 0.1 2.7e-10 40.9 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433592012|ref|YP_007281508.1| - 1.3e-08 34.5 0.0 1.7e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|433592012|ref|YP_007281508.1| - 2.3e-06 27.6 0.0 3e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|433592012|ref|YP_007281508.1| - 0.00011 22.2 0.0 0.00061 19.7 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.11 gi|433592012|ref|YP_007281508.1| - 0.0037 16.9 0.0 0.0077 15.9 0.0 1.4 2 0 0 2 2 2 1 Nodulation protein S (NodS) MarR_2 PF12802.7 gi|433592013|ref|YP_007281509.1| - 4.9e-05 23.1 0.0 7e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|433592013|ref|YP_007281509.1| - 0.0023 18.1 0.4 0.017 15.3 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|433592013|ref|YP_007281509.1| - 0.0045 16.9 0.0 0.011 15.7 0.0 1.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|433592013|ref|YP_007281509.1| - 0.0088 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|433592013|ref|YP_007281509.1| - 0.013 15.2 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Mrr_N PF14338.6 gi|433592013|ref|YP_007281509.1| - 0.016 15.4 0.0 0.034 14.3 0.0 1.5 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_12 PF08461.10 gi|433592013|ref|YP_007281509.1| - 0.016 15.1 0.1 0.022 14.7 0.1 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain AbiEi_4 PF13338.6 gi|433592013|ref|YP_007281509.1| - 0.018 15.2 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin MarR PF01047.22 gi|433592013|ref|YP_007281509.1| - 0.025 14.5 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|433592013|ref|YP_007281509.1| - 0.039 14.0 0.0 0.05 13.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|433592013|ref|YP_007281509.1| - 0.068 13.2 0.0 0.093 12.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix RecG_N PF17190.4 gi|433592015|ref|YP_007281511.1| - 0.12 13.1 2.5 0.31 11.8 0.1 2.4 2 1 0 2 2 2 0 RecG N-terminal helical domain NDUFV3 PF15880.5 gi|433592015|ref|YP_007281511.1| - 0.16 12.0 3.4 0.37 10.8 3.4 1.6 1 0 0 1 1 1 0 NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial TCR_zetazeta PF11628.8 gi|433592017|ref|YP_007281513.1| - 0.054 13.2 0.5 0.12 12.0 0.5 1.5 1 1 0 1 1 1 0 T-cell surface glycoprotein CD3 zeta chain Phage_integrase PF00589.22 gi|433592018|ref|YP_007281514.1| - 3.3e-15 56.3 0.0 4.7e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.7 gi|433592018|ref|YP_007281514.1| - 0.0061 16.7 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Integrase HTH_23 PF13384.6 gi|433592018|ref|YP_007281514.1| - 0.042 13.6 0.4 0.33 10.8 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_32 PF13565.6 gi|433592018|ref|YP_007281514.1| - 0.62 10.7 3.3 9.8 6.9 0.1 3.1 4 0 0 4 4 4 0 Homeodomain-like domain BolA PF01722.18 gi|433592019|ref|YP_007281515.1| - 0.061 13.6 0.0 0.076 13.3 0.0 1.2 1 0 0 1 1 1 0 BolA-like protein Fic PF02661.18 gi|433592020|ref|YP_007281516.1| - 4.7e-09 37.0 0.5 8.2e-08 33.0 0.2 2.4 2 1 0 2 2 2 1 Fic/DOC family ToxS PF17323.2 gi|433592021|ref|YP_007281517.1| - 0.2 11.3 0.0 0.22 11.2 0.0 1.0 1 0 0 1 1 1 0 Trans-membrane regulatory protein ToxS Fic_N PF13784.6 gi|433592023|ref|YP_007281519.1| - 1.5e-19 69.8 0.1 3.3e-19 68.7 0.0 1.6 2 0 0 2 2 2 1 Fic/DOC family N-terminal Fic PF02661.18 gi|433592023|ref|YP_007281519.1| - 2.9e-17 63.3 0.0 8.7e-17 61.8 0.0 1.8 2 0 0 2 2 2 1 Fic/DOC family TrmB PF01978.19 gi|433592023|ref|YP_007281519.1| - 0.00062 19.6 0.5 0.0023 17.8 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|433592023|ref|YP_007281519.1| - 0.0013 18.6 0.0 0.0034 17.3 0.0 1.7 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|433592023|ref|YP_007281519.1| - 0.0072 15.9 0.0 0.038 13.6 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family DUF4172 PF13776.6 gi|433592023|ref|YP_007281519.1| - 0.01 16.2 0.0 0.065 13.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) Ribosomal_S25 PF03297.15 gi|433592023|ref|YP_007281519.1| - 0.038 14.2 0.0 0.065 13.4 0.0 1.3 1 0 0 1 1 1 0 S25 ribosomal protein RTP PF02334.16 gi|433592023|ref|YP_007281519.1| - 0.063 13.9 0.2 0.29 11.8 0.0 2.1 2 1 1 3 3 3 0 Replication terminator protein HTH_17 PF12728.7 gi|433592023|ref|YP_007281519.1| - 0.088 13.0 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TaqI_C PF12950.7 gi|433592025|ref|YP_007281521.1| - 2.8e-14 53.2 0.0 4.5e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain N6_Mtase PF02384.16 gi|433592025|ref|YP_007281521.1| - 6.3e-07 28.9 0.0 0.044 13.1 0.0 2.6 2 1 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.11 gi|433592025|ref|YP_007281521.1| - 0.0024 18.3 0.0 0.0048 17.4 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase adh_short PF00106.25 gi|433592026|ref|YP_007281522.1| - 3.5e-45 153.9 0.0 4.6e-45 153.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|433592026|ref|YP_007281522.1| - 2.6e-33 115.5 0.0 3.7e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|433592026|ref|YP_007281522.1| - 4e-08 33.4 0.0 5.2e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433592026|ref|YP_007281522.1| - 0.00079 18.9 0.0 0.0014 18.1 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|433592026|ref|YP_007281522.1| - 0.0013 18.3 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family DUF1776 PF08643.10 gi|433592026|ref|YP_007281522.1| - 0.014 14.8 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) HHH_5 PF14520.6 gi|433592026|ref|YP_007281522.1| - 0.044 14.4 0.0 0.73 10.5 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|433592026|ref|YP_007281522.1| - 0.047 13.5 0.2 2.1 8.3 0.0 2.5 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda RmlD_sub_bind PF04321.17 gi|433592026|ref|YP_007281522.1| - 0.074 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain tRNA-synt_1 PF00133.22 gi|433592028|ref|YP_007281524.1| - 7.1e-58 196.3 0.1 8.7e-39 133.3 0.8 4.3 1 1 1 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|433592028|ref|YP_007281524.1| - 2.6e-54 183.5 0.0 4.2e-54 182.9 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|433592028|ref|YP_007281524.1| - 1e-30 106.8 0.0 3.6e-21 75.4 0.0 4.5 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|433592028|ref|YP_007281524.1| - 5.4e-15 55.7 0.0 9.3e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|433592028|ref|YP_007281524.1| - 0.0013 17.8 0.0 1.2 8.0 0.0 3.2 3 0 0 3 3 3 1 tRNA synthetases class I (K) IBR PF01485.21 gi|433592028|ref|YP_007281524.1| - 0.0025 18.0 0.4 0.037 14.2 0.1 2.4 2 0 0 2 2 2 1 IBR domain, a half RING-finger domain PknG_rubred PF16919.5 gi|433592028|ref|YP_007281524.1| - 0.0062 16.7 1.3 0.014 15.6 0.2 2.1 2 0 0 2 2 2 1 Protein kinase G rubredoxin domain DZR PF12773.7 gi|433592028|ref|YP_007281524.1| - 0.0077 16.2 4.5 1.1 9.3 0.4 2.6 2 1 0 2 2 2 2 Double zinc ribbon tRNA-synt_1e PF01406.19 gi|433592028|ref|YP_007281524.1| - 0.0088 15.4 0.0 1.2 8.4 0.1 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain DNA_ligase_ZBD PF03119.16 gi|433592028|ref|YP_007281524.1| - 0.079 13.0 4.7 0.3 11.1 0.0 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|433592028|ref|YP_007281524.1| - 0.4 10.8 11.3 7.5 6.8 4.7 3.1 2 1 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|433592028|ref|YP_007281524.1| - 1.1 8.8 12.8 6.8 6.3 0.2 4.0 3 1 1 4 4 4 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|433592028|ref|YP_007281524.1| - 6.6 6.3 7.8 8.4 6.0 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain HalOD1 PF18545.1 gi|433592029|ref|YP_007281525.1| - 6.4e-25 87.2 0.1 7.7e-25 87.0 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF420 PF04238.12 gi|433592030|ref|YP_007281526.1| - 1.7e-36 125.4 10.5 1.7e-36 125.4 10.5 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) Cytochrom_B561 PF03188.16 gi|433592030|ref|YP_007281526.1| - 0.32 11.1 13.2 0.68 10.1 8.8 2.7 1 1 0 2 2 2 0 Eukaryotic cytochrome b561 DUF3413 PF11893.8 gi|433592030|ref|YP_007281526.1| - 0.42 9.7 7.5 1.9 7.6 1.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3413) DUF2070 PF09843.9 gi|433592030|ref|YP_007281526.1| - 1.1 7.5 8.6 1.5 7.0 8.6 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) Vma12 PF11712.8 gi|433592030|ref|YP_007281526.1| - 1.3 9.1 7.0 5.9 7.0 0.2 2.2 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase ThiP_synth PF10120.9 gi|433592031|ref|YP_007281527.1| - 1.7e-50 170.9 0.1 3.4e-50 169.9 0.1 1.5 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|433592031|ref|YP_007281527.1| - 4.5e-07 29.8 0.0 9.5e-07 28.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|433592031|ref|YP_007281527.1| - 0.00023 21.4 0.4 0.001 19.4 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|433592031|ref|YP_007281527.1| - 0.00054 19.4 1.4 0.00076 18.9 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|433592031|ref|YP_007281527.1| - 0.00065 19.5 0.9 0.0066 16.3 0.1 2.6 2 1 0 2 2 2 1 MarR family HTH_37 PF13744.6 gi|433592031|ref|YP_007281527.1| - 0.0011 18.8 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|433592031|ref|YP_007281527.1| - 0.0012 18.6 0.1 0.0036 17.0 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 gi|433592031|ref|YP_007281527.1| - 0.0017 17.9 0.0 0.0041 16.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|433592031|ref|YP_007281527.1| - 0.021 15.3 0.0 0.041 14.3 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain P22_Cro PF14549.6 gi|433592031|ref|YP_007281527.1| - 0.042 13.7 2.2 0.06 13.2 0.2 2.3 3 0 0 3 3 3 0 DNA-binding transcriptional regulator Cro YdaS_antitoxin PF15943.5 gi|433592031|ref|YP_007281527.1| - 0.055 13.4 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 gi|433592031|ref|YP_007281527.1| - 0.055 13.2 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_19 PF12844.7 gi|433592031|ref|YP_007281527.1| - 0.059 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|433592031|ref|YP_007281527.1| - 0.12 12.3 0.0 0.35 10.8 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_17 PF12728.7 gi|433592031|ref|YP_007281527.1| - 0.17 12.1 0.0 0.56 10.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433592031|ref|YP_007281527.1| - 0.17 11.7 1.6 0.77 9.6 0.0 2.6 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|433592031|ref|YP_007281527.1| - 0.44 10.7 1.5 1.1 9.5 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain Methyltransf_23 PF13489.6 gi|433592032|ref|YP_007281528.1| - 4.6e-12 46.1 0.0 5.3e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433592032|ref|YP_007281528.1| - 8e-12 45.2 0.0 1.4e-11 44.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433592032|ref|YP_007281528.1| - 7.2e-10 39.4 0.1 2.1e-06 28.3 0.0 2.3 1 1 1 2 2 2 2 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433592032|ref|YP_007281528.1| - 8.3e-10 39.3 0.0 2.5e-09 37.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433592032|ref|YP_007281528.1| - 1.2e-09 38.8 0.0 2e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|433592032|ref|YP_007281528.1| - 8.7e-07 28.9 0.0 1.3e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|433592032|ref|YP_007281528.1| - 7.7e-05 22.9 0.0 0.00012 22.2 0.0 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|433592032|ref|YP_007281528.1| - 0.00027 20.5 0.0 0.00044 19.8 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Ubie_methyltran PF01209.18 gi|433592032|ref|YP_007281528.1| - 0.00063 19.1 0.0 0.00095 18.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Fibrillarin PF01269.17 gi|433592032|ref|YP_007281528.1| - 0.013 14.6 0.0 0.02 14.0 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin GCD14 PF08704.10 gi|433592032|ref|YP_007281528.1| - 0.018 14.7 0.0 0.027 14.2 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.20 gi|433592032|ref|YP_007281528.1| - 0.056 12.7 0.0 0.077 12.3 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Arylsulfotran_2 PF14269.6 gi|433592034|ref|YP_007281530.1| - 4.1e-10 39.5 2.0 1.9e-07 30.8 1.7 3.1 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.11 gi|433592034|ref|YP_007281530.1| - 7.3e-09 35.0 6.4 3.9e-07 29.3 4.2 2.7 1 1 2 3 3 3 2 Arylsulfotransferase (ASST) NHL PF01436.21 gi|433592034|ref|YP_007281530.1| - 0.013 15.6 8.8 0.14 12.3 0.0 4.5 5 0 0 5 5 5 0 NHL repeat 4HBT_2 PF13279.6 gi|433592035|ref|YP_007281531.1| - 1.9e-18 67.1 0.0 2.2e-18 66.9 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|433592035|ref|YP_007281531.1| - 5.4e-18 65.1 0.2 7.7e-18 64.6 0.2 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|433592035|ref|YP_007281531.1| - 1.3e-14 54.1 0.1 1.9e-09 37.2 0.0 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase Thi4 PF01946.17 gi|433592037|ref|YP_007281533.1| - 4.6e-60 202.8 0.6 4e-48 163.7 0.2 2.3 2 1 1 3 3 3 2 Thi4 family FAD_oxidored PF12831.7 gi|433592037|ref|YP_007281533.1| - 1.6e-10 40.9 0.3 2.5e-10 40.3 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|433592037|ref|YP_007281533.1| - 3e-10 39.8 0.1 1.6e-07 30.7 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|433592037|ref|YP_007281533.1| - 4.8e-10 39.6 0.8 1.4e-05 24.9 0.3 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|433592037|ref|YP_007281533.1| - 1e-09 38.1 0.0 2e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|433592037|ref|YP_007281533.1| - 3.2e-08 33.7 0.1 7.7e-08 32.5 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|433592037|ref|YP_007281533.1| - 2.5e-07 30.2 0.2 6.4e-07 28.9 0.0 1.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|433592037|ref|YP_007281533.1| - 7.9e-07 28.1 0.0 1.1e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|433592037|ref|YP_007281533.1| - 4.7e-05 22.8 0.0 8.5e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|433592037|ref|YP_007281533.1| - 0.00022 21.7 0.7 0.00066 20.2 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|433592037|ref|YP_007281533.1| - 0.00024 20.1 0.1 0.058 12.2 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|433592037|ref|YP_007281533.1| - 0.00051 19.2 0.2 0.014 14.5 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|433592037|ref|YP_007281533.1| - 0.0016 17.8 0.0 0.0047 16.3 0.0 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Shikimate_DH PF01488.20 gi|433592037|ref|YP_007281533.1| - 0.0019 18.3 0.0 0.086 12.9 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GIDA PF01134.22 gi|433592037|ref|YP_007281533.1| - 0.0019 17.3 0.2 0.0032 16.6 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|433592037|ref|YP_007281533.1| - 0.002 18.2 0.2 0.0061 16.6 0.1 1.8 2 0 0 2 2 2 1 FAD-NAD(P)-binding Glu_dehyd_C PF16912.5 gi|433592037|ref|YP_007281533.1| - 0.0051 16.3 0.1 1.4 8.4 0.1 2.4 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus NAD_binding_7 PF13241.6 gi|433592037|ref|YP_007281533.1| - 0.0052 17.2 0.0 0.01 16.2 0.0 1.6 1 1 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|433592037|ref|YP_007281533.1| - 0.018 15.3 0.3 0.051 13.8 0.1 1.9 2 0 0 2 2 2 0 TrkA-N domain MatE PF01554.18 gi|433592038|ref|YP_007281534.1| - 5.8e-59 198.4 31.8 2.9e-36 124.6 10.8 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|433592038|ref|YP_007281534.1| - 7e-08 32.6 7.4 7e-08 32.6 7.4 4.8 2 2 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Topoisom_bac PF01131.20 gi|433592040|ref|YP_007281536.1| - 9.6e-121 403.6 0.0 1.2e-120 403.3 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|433592040|ref|YP_007281536.1| - 8.7e-21 73.4 14.7 1e-13 50.8 0.9 3.6 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|433592040|ref|YP_007281536.1| - 1.6e-16 60.4 0.0 3.1e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 gi|433592040|ref|YP_007281536.1| - 9.1e-09 35.8 1.8 1.6e-08 35.0 0.2 2.4 2 0 0 2 2 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|433592040|ref|YP_007281536.1| - 0.0022 17.8 0.1 0.012 15.4 0.0 2.3 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|433592040|ref|YP_007281536.1| - 0.0038 17.4 0.0 0.01 16.1 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.23 gi|433592040|ref|YP_007281536.1| - 0.035 14.0 0.0 0.16 11.9 0.0 2.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif Binary_toxB_3 PF17476.2 gi|433592040|ref|YP_007281536.1| - 0.036 14.2 0.5 0.089 13.0 0.5 1.7 1 0 0 1 1 1 0 Clostridial binary toxin B/anthrax toxin PA domain 3 zinc_ribbon_2 PF13240.6 gi|433592040|ref|YP_007281536.1| - 0.51 10.1 3.7 19 5.2 0.1 2.9 2 0 0 2 2 2 0 zinc-ribbon domain Rotamase_2 PF13145.6 gi|433592040|ref|YP_007281536.1| - 0.61 10.9 3.9 0.75 10.6 0.1 2.7 3 0 0 3 3 3 0 PPIC-type PPIASE domain Rubredoxin_2 PF18073.1 gi|433592040|ref|YP_007281536.1| - 0.74 9.6 2.2 30 4.5 0.2 2.7 2 0 0 2 2 2 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|433592040|ref|YP_007281536.1| - 8.4 6.0 8.4 3.3 7.3 0.1 3.8 3 1 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|433592040|ref|YP_007281536.1| - 9.2 6.5 13.2 5.8 7.1 0.1 4.2 3 1 0 3 3 3 0 Zinc ribbon domain AhpC-TSA PF00578.21 gi|433592041|ref|YP_007281537.1| - 3.2e-07 30.3 0.0 4.8e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|433592041|ref|YP_007281537.1| - 9.9e-06 25.3 0.0 1.4e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin PF00085.20 gi|433592041|ref|YP_007281537.1| - 0.00018 21.4 0.0 0.014 15.4 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|433592041|ref|YP_007281537.1| - 0.0016 18.8 0.0 0.0025 18.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Hce2 PF14856.6 gi|433592041|ref|YP_007281537.1| - 0.037 14.3 0.1 0.062 13.6 0.1 1.3 1 0 0 1 1 1 0 Pathogen effector; putative necrosis-inducing factor Phage_tail_L PF05100.12 gi|433592041|ref|YP_007281537.1| - 0.11 11.7 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Phage minor tail protein L Methyltransf_25 PF13649.6 gi|433592042|ref|YP_007281538.1| - 2.4e-15 57.0 0.0 3.5e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433592042|ref|YP_007281538.1| - 1.5e-11 44.4 0.0 2.6e-11 43.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433592042|ref|YP_007281538.1| - 1e-10 42.1 0.0 1.7e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|433592042|ref|YP_007281538.1| - 6e-10 38.9 0.0 6.7e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_31 PF13847.6 gi|433592042|ref|YP_007281538.1| - 2.3e-09 37.2 0.0 3e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433592042|ref|YP_007281538.1| - 6.8e-09 36.4 0.0 1e-08 35.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|433592042|ref|YP_007281538.1| - 1.6e-06 27.8 0.0 2.8e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|433592042|ref|YP_007281538.1| - 5.1e-06 26.3 0.0 6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Ubie_methyltran PF01209.18 gi|433592042|ref|YP_007281538.1| - 6.2e-05 22.4 0.0 7.8e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_PK PF05891.12 gi|433592042|ref|YP_007281538.1| - 0.00016 21.3 0.0 0.00022 20.8 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase TPMT PF05724.11 gi|433592042|ref|YP_007281538.1| - 0.00057 19.6 0.0 0.00079 19.1 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.13 gi|433592042|ref|YP_007281538.1| - 0.023 14.1 0.0 0.032 13.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) LysE PF01810.18 gi|433592043|ref|YP_007281539.1| - 1.6e-22 80.0 9.3 8.6e-22 77.5 9.3 2.0 1 1 0 1 1 1 1 LysE type translocator HD PF01966.22 gi|433592044|ref|YP_007281540.1| - 2.4e-16 60.1 2.9 3.9e-16 59.4 2.9 1.3 1 0 0 1 1 1 1 HD domain TraI_2 PF07514.11 gi|433592044|ref|YP_007281540.1| - 0.011 14.7 0.1 0.097 11.6 0.1 2.0 2 0 0 2 2 2 0 Putative helicase HD_4 PF13328.6 gi|433592044|ref|YP_007281540.1| - 0.026 14.2 0.2 0.057 13.2 0.2 1.5 1 0 0 1 1 1 0 HD domain XylR_N PF06505.11 gi|433592044|ref|YP_007281540.1| - 0.046 13.5 0.1 0.31 10.8 0.1 2.1 2 0 0 2 2 2 0 Activator of aromatic catabolism B12-binding PF02310.19 gi|433592045|ref|YP_007281541.1| - 3.6e-23 81.9 1.1 4.1e-23 81.7 1.1 1.0 1 0 0 1 1 1 1 B12 binding domain Nitro_FeMo-Co PF02579.17 gi|433592045|ref|YP_007281541.1| - 0.073 13.4 0.3 2 8.8 0.0 2.4 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor IMPDH PF00478.25 gi|433592045|ref|YP_007281541.1| - 0.14 11.1 0.1 0.15 11.0 0.1 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain MeaB PF03308.16 gi|433592046|ref|YP_007281542.1| - 2.6e-91 305.3 4.5 3.2e-91 305.0 4.5 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|433592046|ref|YP_007281542.1| - 2.5e-07 30.4 1.3 2e-06 27.5 1.3 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|433592046|ref|YP_007281542.1| - 3e-05 23.7 0.5 9.4e-05 22.1 0.5 1.7 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|433592046|ref|YP_007281542.1| - 3.5e-05 23.7 0.0 8.2e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|433592046|ref|YP_007281542.1| - 9e-05 22.3 0.0 0.00019 21.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|433592046|ref|YP_007281542.1| - 0.00012 22.0 0.1 0.0003 20.7 0.1 1.7 1 0 0 1 1 1 1 NTPase GTP_EFTU PF00009.27 gi|433592046|ref|YP_007281542.1| - 0.00015 21.4 0.0 0.41 10.2 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_18 PF13238.6 gi|433592046|ref|YP_007281542.1| - 0.00021 21.9 0.3 0.011 16.3 0.1 2.7 3 0 0 3 3 3 1 AAA domain ABC_tran PF00005.27 gi|433592046|ref|YP_007281542.1| - 0.00074 20.0 0.1 0.0013 19.2 0.1 1.4 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|433592046|ref|YP_007281542.1| - 0.00083 19.8 0.3 0.0042 17.5 0.1 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|433592046|ref|YP_007281542.1| - 0.00091 19.5 0.0 0.0028 18.0 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.6 gi|433592046|ref|YP_007281542.1| - 0.0029 17.3 0.1 0.0081 15.9 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.14 gi|433592046|ref|YP_007281542.1| - 0.0052 16.7 0.1 0.016 15.1 0.1 1.9 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 gi|433592046|ref|YP_007281542.1| - 0.0084 15.4 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.6 gi|433592046|ref|YP_007281542.1| - 0.014 15.6 1.6 0.016 15.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.14 gi|433592046|ref|YP_007281542.1| - 0.02 14.1 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain MMR_HSR1 PF01926.23 gi|433592046|ref|YP_007281542.1| - 0.024 14.7 0.1 0.047 13.8 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase PRK PF00485.18 gi|433592046|ref|YP_007281542.1| - 0.026 14.3 0.0 0.065 13.0 0.0 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family TrwB_AAD_bind PF10412.9 gi|433592046|ref|YP_007281542.1| - 0.029 13.3 0.0 0.056 12.3 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.6 gi|433592046|ref|YP_007281542.1| - 0.031 14.7 0.3 0.086 13.3 0.1 1.9 2 0 0 2 2 1 0 AAA domain CbiA PF01656.23 gi|433592046|ref|YP_007281542.1| - 0.034 14.2 0.0 0.065 13.3 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain KTI12 PF08433.10 gi|433592046|ref|YP_007281542.1| - 0.034 13.6 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RsgA_GTPase PF03193.16 gi|433592046|ref|YP_007281542.1| - 0.037 13.9 0.0 0.092 12.6 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase Ploopntkinase3 PF18751.1 gi|433592046|ref|YP_007281542.1| - 0.045 13.6 0.0 0.079 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 NACHT PF05729.12 gi|433592046|ref|YP_007281542.1| - 0.052 13.5 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|433592046|ref|YP_007281542.1| - 0.082 13.2 0.2 0.22 11.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|433592046|ref|YP_007281542.1| - 0.087 13.0 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|433592046|ref|YP_007281542.1| - 0.11 11.7 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ParA PF10609.9 gi|433592046|ref|YP_007281542.1| - 0.25 10.7 2.3 0.86 9.0 0.1 2.1 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase Abhydrolase_6 PF12697.7 gi|433592047|ref|YP_007281543.1| - 5.4e-28 99.1 8.8 7.1e-28 98.7 8.8 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433592047|ref|YP_007281543.1| - 4.5e-09 35.9 0.0 6.5e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|433592047|ref|YP_007281543.1| - 9.2e-09 35.3 0.0 8.8e-07 28.8 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Rick_17kDa_Anti PF05433.15 gi|433592047|ref|YP_007281543.1| - 0.023 14.6 1.6 0.051 13.5 1.6 1.6 1 0 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_OmpA PF13436.6 gi|433592047|ref|YP_007281543.1| - 0.049 13.4 1.5 0.097 12.5 1.5 1.4 1 0 0 1 1 1 0 Glycine-zipper domain Gly-zipper_YMGG PF13441.6 gi|433592047|ref|YP_007281543.1| - 0.1 12.3 3.4 0.19 11.5 3.4 1.4 1 0 0 1 1 1 0 YMGG-like Gly-zipper OrfB_Zn_ribbon PF07282.11 gi|433592048|ref|YP_007281544.1| - 1.2e-19 70.0 0.6 2.6e-19 68.9 0.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OB_aCoA_assoc PF01796.17 gi|433592050|ref|YP_007281546.1| - 4.7e-14 52.1 1.6 6.8e-14 51.6 1.6 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|433592050|ref|YP_007281546.1| - 3.3e-05 23.7 0.7 5.8e-05 22.9 0.7 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_N PF00108.23 gi|433592051|ref|YP_007281547.1| - 2.6e-25 89.3 0.2 8.8e-25 87.5 0.2 1.9 1 1 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|433592051|ref|YP_007281547.1| - 2e-12 47.3 1.4 7e-10 38.9 0.9 2.8 1 1 1 2 2 2 2 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|433592051|ref|YP_007281547.1| - 3.2e-09 36.5 0.3 7e-09 35.4 0.3 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain Peptidase_M42 PF05343.14 gi|433592052|ref|YP_007281548.1| - 1.8e-88 296.4 4.6 2e-88 296.2 4.6 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|433592052|ref|YP_007281548.1| - 2.7e-13 50.1 0.8 4.1e-13 49.5 0.3 1.5 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|433592052|ref|YP_007281548.1| - 3.3e-09 36.1 0.5 4.3e-05 22.5 0.1 2.1 1 1 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) HTH_31 PF13560.6 gi|433592053|ref|YP_007281549.1| - 0.025 14.9 3.5 0.035 14.4 3.5 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|433592053|ref|YP_007281549.1| - 0.026 14.6 0.1 0.038 14.1 0.1 1.3 1 1 0 1 1 1 0 Helix-turn-helix HTH_19 PF12844.7 gi|433592053|ref|YP_007281549.1| - 0.077 13.0 0.1 0.11 12.6 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Na_sulph_symp PF00939.19 gi|433592054|ref|YP_007281550.1| - 6.2e-79 266.2 31.3 7.5e-79 265.9 31.3 1.1 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|433592054|ref|YP_007281550.1| - 1.7e-34 119.4 51.1 4.8e-18 65.4 10.5 3.2 2 1 1 3 3 3 2 Citrate transporter Acetyltransf_1 PF00583.25 gi|433592055|ref|YP_007281551.1| - 6.9e-11 42.4 0.0 8e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|433592055|ref|YP_007281551.1| - 8.3e-10 38.7 0.0 1.2e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|433592055|ref|YP_007281551.1| - 1.6e-07 32.1 0.1 1.8e-07 31.9 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|433592055|ref|YP_007281551.1| - 4e-05 23.3 0.3 5.4e-05 22.9 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|433592055|ref|YP_007281551.1| - 4.7e-05 23.7 0.0 7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433592055|ref|YP_007281551.1| - 0.0001 22.2 0.0 0.00028 20.8 0.0 1.7 1 1 0 1 1 1 1 FR47-like protein Death PF00531.22 gi|433592055|ref|YP_007281551.1| - 0.017 15.3 0.1 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 Death domain UbiA PF01040.18 gi|433592056|ref|YP_007281552.1| - 1.4e-55 188.4 25.3 1.4e-55 188.4 25.3 3.0 3 1 0 3 3 3 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|433592056|ref|YP_007281552.1| - 6.4e-11 41.9 14.1 2.8e-07 29.9 7.5 3.9 3 2 1 4 4 4 2 Cytochrome oxidase assembly protein zf-CHCC PF10276.9 gi|433592057|ref|YP_007281553.1| - 0.017 15.2 0.6 0.033 14.2 0.6 1.5 1 0 0 1 1 1 0 Zinc-finger domain zf-C2H2 PF00096.26 gi|433592057|ref|YP_007281553.1| - 0.057 13.9 0.4 0.086 13.3 0.4 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-RING_7 PF02591.15 gi|433592057|ref|YP_007281553.1| - 0.075 13.2 0.6 0.16 12.2 0.6 1.5 1 0 0 1 1 1 0 C4-type zinc ribbon domain FYDLN_acid PF09538.10 gi|433592057|ref|YP_007281553.1| - 0.08 13.6 0.0 0.12 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-C2H2_4 PF13894.6 gi|433592057|ref|YP_007281553.1| - 0.097 13.6 0.3 0.15 13.0 0.3 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger Rad50_zn_hook PF04423.14 gi|433592057|ref|YP_007281553.1| - 0.23 11.3 0.7 0.38 10.6 0.7 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif Zn_ribbon_recom PF13408.6 gi|433592057|ref|YP_007281553.1| - 0.66 10.5 2.3 0.86 10.2 2.3 1.3 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF3267 PF11667.8 gi|433592059|ref|YP_007281555.1| - 2.8e-27 95.1 0.6 2.8e-27 95.1 0.6 2.4 3 0 0 3 3 3 1 Putative zincin peptidase PadR PF03551.14 gi|433592060|ref|YP_007281556.1| - 3.6e-07 30.1 0.0 4.8e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|433592060|ref|YP_007281556.1| - 0.0048 16.7 0.0 0.018 14.8 0.0 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|433592060|ref|YP_007281556.1| - 0.034 13.9 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HicA_toxin PF07927.12 gi|433592060|ref|YP_007281556.1| - 0.058 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 HicA toxin of bacterial toxin-antitoxin, HTH_20 PF12840.7 gi|433592060|ref|YP_007281556.1| - 0.059 13.4 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|433592060|ref|YP_007281556.1| - 0.059 13.3 0.0 0.084 12.8 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Pex24p PF06398.11 gi|433592061|ref|YP_007281557.1| - 0.25 10.3 0.3 0.25 10.3 0.3 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin Acyl-CoA_dh_1 PF00441.24 gi|433592062|ref|YP_007281558.1| - 7.8e-48 162.5 0.7 1.1e-47 161.9 0.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|433592062|ref|YP_007281558.1| - 2.4e-37 128.1 0.2 5.1e-37 127.0 0.2 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|433592062|ref|YP_007281558.1| - 4.1e-25 88.6 0.5 6.2e-25 88.0 0.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433592062|ref|YP_007281558.1| - 1.6e-24 85.9 0.0 3.2e-24 84.9 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain AMP-binding PF00501.28 gi|433592063|ref|YP_007281559.1| - 1.1e-92 310.8 0.0 1.3e-92 310.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433592063|ref|YP_007281559.1| - 5e-23 81.9 0.4 9.5e-23 81.0 0.4 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|433592063|ref|YP_007281559.1| - 0.13 12.5 0.0 0.33 11.2 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|433592064|ref|YP_007281560.1| - 1.6e-50 171.6 0.0 1.9e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|433592064|ref|YP_007281560.1| - 4.9e-19 68.8 0.0 6.5e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|433592064|ref|YP_007281560.1| - 3e-14 53.1 0.0 4.7e-14 52.4 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|433592064|ref|YP_007281560.1| - 8.4e-08 31.6 0.0 1.1e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 gi|433592064|ref|YP_007281560.1| - 0.00021 21.5 0.1 0.00057 20.1 0.0 1.7 2 1 0 2 2 2 1 TrkA-N domain NAD_binding_4 PF07993.12 gi|433592064|ref|YP_007281560.1| - 0.031 13.4 0.0 0.068 12.3 0.0 1.4 1 1 0 1 1 1 0 Male sterility protein Sacchrp_dh_NADP PF03435.18 gi|433592064|ref|YP_007281560.1| - 0.033 14.4 0.0 0.1 12.8 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain RmlD_sub_bind PF04321.17 gi|433592064|ref|YP_007281560.1| - 0.038 13.1 0.0 0.2 10.7 0.0 1.9 1 1 0 1 1 1 0 RmlD substrate binding domain KR PF08659.10 gi|433592064|ref|YP_007281560.1| - 0.047 13.6 0.0 8.3 6.3 0.0 2.4 2 1 0 2 2 2 0 KR domain Semialdhyde_dh PF01118.24 gi|433592064|ref|YP_007281560.1| - 0.13 12.7 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.15 gi|433592064|ref|YP_007281560.1| - 0.18 10.9 0.0 1.4 7.9 0.0 2.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|433592064|ref|YP_007281560.1| - 0.22 10.9 0.0 0.34 10.2 0.0 1.4 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase SQS_PSY PF00494.19 gi|433592065|ref|YP_007281561.1| - 3.3e-53 180.9 3.1 4e-53 180.6 3.1 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase HetR_C PF18460.1 gi|433592065|ref|YP_007281561.1| - 0.0035 17.2 0.3 0.016 15.2 0.1 2.2 2 0 0 2 2 2 1 Heterocyst differentiation regulator C-terminal Hood domain VKG_Carbox PF05090.14 gi|433592066|ref|YP_007281562.1| - 3.1e-05 23.0 0.0 3.9e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase 3HCDH_N PF02737.18 gi|433592068|ref|YP_007281564.1| - 1.1e-56 191.5 0.1 1.4e-56 191.2 0.1 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|433592068|ref|YP_007281564.1| - 9.6e-33 112.7 0.0 2.2e-32 111.6 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|433592068|ref|YP_007281564.1| - 0.00064 19.9 0.8 0.00097 19.3 0.4 1.6 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|433592068|ref|YP_007281564.1| - 0.0036 17.8 0.3 0.02 15.5 0.0 2.3 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|433592068|ref|YP_007281564.1| - 0.0088 16.0 0.2 0.019 14.9 0.0 1.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|433592068|ref|YP_007281564.1| - 0.022 14.1 0.0 0.039 13.3 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|433592068|ref|YP_007281564.1| - 0.05 13.2 2.6 0.056 13.0 0.7 1.9 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|433592068|ref|YP_007281564.1| - 0.086 12.1 1.0 0.4 9.9 1.1 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Asp_Glu_race PF01177.22 gi|433592068|ref|YP_007281564.1| - 0.11 12.3 0.1 2.7 7.8 0.0 2.2 1 1 0 2 2 2 0 Asp/Glu/Hydantoin racemase HHH_5 PF14520.6 gi|433592069|ref|YP_007281565.1| - 0.0065 17.0 1.2 0.015 15.9 0.1 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|433592069|ref|YP_007281565.1| - 0.023 14.5 0.0 0.047 13.5 0.0 1.5 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DUF3306 PF11748.8 gi|433592069|ref|YP_007281565.1| - 0.025 15.5 1.3 0.057 14.3 1.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3306) DUF4332 PF14229.6 gi|433592069|ref|YP_007281565.1| - 0.064 13.5 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) DeoC PF01791.9 gi|433592070|ref|YP_007281566.1| - 5e-38 131.0 0.0 5.9e-38 130.8 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase FBPase PF00316.20 gi|433592071|ref|YP_007281567.1| - 5.7e-27 94.4 0.2 8.4e-27 93.9 0.2 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|433592071|ref|YP_007281567.1| - 0.034 13.6 0.1 0.049 13.1 0.1 1.2 1 0 0 1 1 1 0 Inositol monophosphatase family Aldedh PF00171.22 gi|433592076|ref|YP_007281572.1| - 1.3e-139 465.7 0.0 1.5e-139 465.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family baeRF_family2 PF18844.1 gi|433592076|ref|YP_007281572.1| - 0.39 10.8 8.9 0.51 10.4 0.4 4.0 4 1 0 4 4 4 0 Bacterial archaeo-eukaryotic release factor family 2 A2L_zn_ribbon PF08792.10 gi|433592077|ref|YP_007281573.1| - 0.0045 16.7 2.6 1.3 8.8 0.1 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain Terminase_GpA PF05876.12 gi|433592077|ref|YP_007281573.1| - 0.0052 15.4 0.7 0.0059 15.2 0.7 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) TF_Zn_Ribbon PF08271.12 gi|433592077|ref|YP_007281573.1| - 0.0076 15.7 7.8 0.031 13.8 7.8 1.9 1 1 0 1 1 1 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|433592077|ref|YP_007281573.1| - 0.0098 15.8 3.7 0.058 13.4 0.0 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon Lar_restr_allev PF14354.6 gi|433592077|ref|YP_007281573.1| - 0.013 15.9 0.6 0.017 15.5 0.6 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn_ribbon_recom PF13408.6 gi|433592077|ref|YP_007281573.1| - 0.014 15.9 0.8 5.5 7.6 0.3 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain DZR PF12773.7 gi|433592077|ref|YP_007281573.1| - 0.015 15.3 0.4 0.024 14.6 0.4 1.3 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|433592077|ref|YP_007281573.1| - 0.018 14.9 0.9 0.038 13.9 0.9 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Vps36-NZF-N PF16988.5 gi|433592077|ref|YP_007281573.1| - 0.023 14.1 0.7 0.035 13.5 0.8 1.4 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zinc_ribbon_2 PF13240.6 gi|433592077|ref|YP_007281573.1| - 0.027 14.2 2.5 0.098 12.4 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Methyltransf_13 PF08421.11 gi|433592077|ref|YP_007281573.1| - 0.037 14.3 0.8 4.6 7.6 0.1 2.2 2 0 0 2 2 2 0 Putative zinc binding domain Nudix_N_2 PF14803.6 gi|433592077|ref|YP_007281573.1| - 0.058 13.3 6.3 0.14 12.1 6.3 1.7 1 1 0 1 1 1 0 Nudix N-terminal ArfGap PF01412.18 gi|433592077|ref|YP_007281573.1| - 0.11 12.5 0.9 0.13 12.4 0.9 1.1 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf zf_UBZ PF18439.1 gi|433592077|ref|YP_007281573.1| - 0.16 11.6 5.5 0.73 9.5 0.0 2.9 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_6 PF14599.6 gi|433592077|ref|YP_007281573.1| - 0.4 10.7 3.6 0.48 10.5 0.0 2.1 1 1 1 2 2 2 0 Zinc-ribbon Zn-ribbon_8 PF09723.10 gi|433592077|ref|YP_007281573.1| - 0.68 10.1 4.8 2.7 8.2 4.5 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Cdc6_C PF09079.11 gi|433592078|ref|YP_007281574.1| - 1.3e-16 60.3 0.5 4.1e-16 58.7 0.1 2.0 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|433592078|ref|YP_007281574.1| - 1.3e-11 45.1 0.0 3.8e-11 43.7 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|433592078|ref|YP_007281574.1| - 3.4e-10 40.3 0.0 8.2e-10 39.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|433592078|ref|YP_007281574.1| - 1.6e-06 28.5 0.1 4.6e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|433592078|ref|YP_007281574.1| - 1.9e-06 27.9 0.0 4.7e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|433592078|ref|YP_007281574.1| - 2.5e-06 27.5 0.0 4.1e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 NACHT domain TniB PF05621.11 gi|433592078|ref|YP_007281574.1| - 8e-06 25.4 0.0 1.6e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein DUF815 PF05673.13 gi|433592078|ref|YP_007281574.1| - 4.7e-05 22.7 0.0 0.00012 21.3 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|433592078|ref|YP_007281574.1| - 0.00012 21.8 0.0 0.00039 20.2 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF2791 PF10923.8 gi|433592078|ref|YP_007281574.1| - 0.0073 15.2 0.0 0.014 14.3 0.0 1.5 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_2 PF07724.14 gi|433592078|ref|YP_007281574.1| - 0.0079 16.3 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) NB-ARC PF00931.22 gi|433592078|ref|YP_007281574.1| - 0.011 14.9 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_32 PF13654.6 gi|433592078|ref|YP_007281574.1| - 0.026 13.3 1.1 0.75 8.5 0.8 2.1 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|433592078|ref|YP_007281574.1| - 0.035 14.0 0.0 0.086 12.7 0.0 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|433592078|ref|YP_007281574.1| - 0.065 12.7 0.1 4 6.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_7 PF12775.7 gi|433592078|ref|YP_007281574.1| - 0.078 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|433592078|ref|YP_007281574.1| - 0.11 13.0 0.2 0.43 11.1 0.2 2.1 1 1 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 gi|433592078|ref|YP_007281574.1| - 0.17 12.3 0.0 0.47 10.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase ELFV_dehydrog PF00208.21 gi|433592079|ref|YP_007281575.1| - 6.4e-72 242.2 0.5 8.6e-72 241.8 0.5 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|433592079|ref|YP_007281575.1| - 2.5e-53 179.4 0.0 4.6e-53 178.5 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Oxidored_nitro PF00148.19 gi|433592079|ref|YP_007281575.1| - 0.0047 15.7 0.0 0.0068 15.2 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase 2-Hacid_dh_C PF02826.19 gi|433592079|ref|YP_007281575.1| - 0.0077 15.6 0.5 0.015 14.7 0.0 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HupF_HypC PF01455.18 gi|433592080|ref|YP_007281576.1| - 0.012 15.7 0.0 0.026 14.7 0.0 1.5 1 0 0 1 1 1 0 HupF/HypC family Omp28 PF11551.8 gi|433592080|ref|YP_007281576.1| - 0.05 13.5 0.1 0.095 12.5 0.1 1.4 1 0 0 1 1 1 0 Outer membrane protein Omp28 TAT_signal PF10518.9 gi|433592080|ref|YP_007281576.1| - 0.17 11.8 3.2 0.27 11.1 3.2 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cwf_Cwc_15 PF04889.12 gi|433592080|ref|YP_007281576.1| - 0.41 10.3 6.7 0.49 10.1 6.7 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Acyl-CoA_dh_1 PF00441.24 gi|433592081|ref|YP_007281577.1| - 6.4e-46 156.3 0.2 9.5e-46 155.7 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|433592081|ref|YP_007281577.1| - 1.2e-37 129.0 0.2 2.9e-37 127.8 0.1 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433592081|ref|YP_007281577.1| - 3.7e-24 84.8 0.0 6e-24 84.1 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|433592081|ref|YP_007281577.1| - 2e-14 54.0 0.9 3.6e-14 53.2 0.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Vault PF01505.18 gi|433592081|ref|YP_007281577.1| - 0.016 15.3 0.0 0.041 14.0 0.0 1.7 1 0 0 1 1 1 0 Major Vault Protein repeat domain DUF4013 PF13197.6 gi|433592082|ref|YP_007281578.1| - 0.011 15.6 21.1 0.011 15.6 21.1 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF4013) RIO1 PF01163.22 gi|433592083|ref|YP_007281579.1| - 3.3e-10 39.9 0.0 5.3e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|433592083|ref|YP_007281579.1| - 9.5e-07 28.4 0.0 1.5e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|433592083|ref|YP_007281579.1| - 9.4e-06 25.7 5.3 0.0012 18.8 2.8 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|433592083|ref|YP_007281579.1| - 0.0015 18.0 0.0 0.002 17.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain APH_6_hur PF04655.14 gi|433592083|ref|YP_007281579.1| - 0.018 14.4 0.2 0.044 13.2 0.1 1.7 1 1 1 2 2 2 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase Kinase-PolyVal PF18762.1 gi|433592083|ref|YP_007281579.1| - 0.08 12.9 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins Aldedh PF00171.22 gi|433592084|ref|YP_007281580.1| - 1.1e-143 479.1 0.1 8.1e-115 384.0 0.0 2.0 1 1 1 2 2 2 2 Aldehyde dehydrogenase family LuxC PF05893.14 gi|433592084|ref|YP_007281580.1| - 0.03 13.4 0.0 0.066 12.2 0.0 1.6 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) OmdA PF13376.6 gi|433592084|ref|YP_007281580.1| - 0.21 11.6 1.1 0.4 10.7 1.1 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated NTP_transferase PF00483.23 gi|433592085|ref|YP_007281581.1| - 1.8e-36 126.0 0.0 3.1e-36 125.2 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|433592085|ref|YP_007281581.1| - 4.9e-18 66.0 0.3 7.9e-18 65.3 0.3 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|433592085|ref|YP_007281581.1| - 7e-10 38.2 14.8 0.0014 18.3 0.1 4.4 4 1 1 5 5 5 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|433592085|ref|YP_007281581.1| - 2.7e-05 24.0 0.0 4e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|433592085|ref|YP_007281581.1| - 0.032 13.2 0.0 0.081 11.8 0.0 1.5 1 1 1 2 2 2 0 L-fucokinase DUF4954 PF16314.5 gi|433592085|ref|YP_007281581.1| - 0.038 12.1 0.1 0.056 11.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Hexapep_2 PF14602.6 gi|433592085|ref|YP_007281581.1| - 0.11 12.3 8.2 11 5.9 0.1 4.3 3 1 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase EamA PF00892.20 gi|433592086|ref|YP_007281582.1| - 0.021 15.0 5.8 0.021 15.0 5.8 2.2 1 1 1 2 2 2 0 EamA-like transporter family CN_hydrolase PF00795.22 gi|433592087|ref|YP_007281583.1| - 7.5e-51 173.0 0.0 8.5e-51 172.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Polyketide_cyc2 PF10604.9 gi|433592088|ref|YP_007281584.1| - 1.3e-19 70.9 1.4 1.5e-19 70.7 1.4 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|433592088|ref|YP_007281584.1| - 1.1e-06 28.5 0.0 1.2e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.20 gi|433592088|ref|YP_007281584.1| - 8.6e-06 26.0 0.3 1e-05 25.7 0.3 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF3833 PF12915.7 gi|433592088|ref|YP_007281584.1| - 0.06 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3833) Ribosomal_S17 PF00366.20 gi|433592088|ref|YP_007281584.1| - 0.066 13.3 1.0 0.13 12.4 0.5 1.8 2 0 0 2 2 2 0 Ribosomal protein S17 FaeA PF04703.12 gi|433592089|ref|YP_007281585.1| - 0.00087 19.6 0.1 0.0011 19.3 0.1 1.2 1 0 0 1 1 1 1 FaeA-like protein Put_DNA-bind_N PF06971.13 gi|433592089|ref|YP_007281585.1| - 0.0056 16.7 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus z-alpha PF02295.17 gi|433592089|ref|YP_007281585.1| - 0.053 13.6 0.0 0.083 12.9 0.0 1.4 1 1 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_36 PF13730.6 gi|433592089|ref|YP_007281585.1| - 0.061 13.3 0.0 0.087 12.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|433592089|ref|YP_007281585.1| - 0.081 13.0 0.0 0.098 12.7 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|433592089|ref|YP_007281585.1| - 0.089 12.6 0.1 0.59 10.0 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain PhoU PF01895.19 gi|433592091|ref|YP_007281587.1| - 2e-14 53.8 2.6 5.8e-11 42.7 0.0 2.6 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|433592091|ref|YP_007281587.1| - 5e-08 32.7 0.0 1.1e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF2200 PF09966.9 gi|433592091|ref|YP_007281587.1| - 0.14 12.3 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2200) NAD_kinase PF01513.21 gi|433592092|ref|YP_007281588.1| - 2.4e-42 145.1 0.1 3e-42 144.8 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|433592092|ref|YP_007281588.1| - 1.3e-06 28.0 0.1 4.6e-06 26.3 0.1 1.8 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain Peripla_BP_4 PF13407.6 gi|433592092|ref|YP_007281588.1| - 0.053 13.1 0.1 0.091 12.3 0.1 1.5 1 0 0 1 1 1 0 Periplasmic binding protein domain PFK PF00365.20 gi|433592092|ref|YP_007281588.1| - 0.16 11.3 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 Phosphofructokinase MoCF_biosynth PF00994.24 gi|433592094|ref|YP_007281590.1| - 1.3e-35 122.1 0.4 1.9e-35 121.6 0.4 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain DDE_5 PF13546.6 gi|433592095|ref|YP_007281591.1| - 8.6e-27 94.2 0.0 1.4e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|433592095|ref|YP_007281591.1| - 2.5e-12 46.9 0.0 3.8e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433592095|ref|YP_007281591.1| - 0.00016 21.0 0.0 0.00069 18.9 0.0 1.9 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 HTH_20 PF12840.7 gi|433592096|ref|YP_007281592.1| - 7.7e-07 29.1 0.0 1.5e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|433592096|ref|YP_007281592.1| - 0.00031 20.6 0.0 0.00044 20.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|433592096|ref|YP_007281592.1| - 0.00053 19.5 0.0 0.00098 18.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RP-C PF03428.13 gi|433592096|ref|YP_007281592.1| - 0.0006 19.5 0.0 0.00084 19.0 0.0 1.2 1 1 0 1 1 1 1 Replication protein C N-terminal domain PadR PF03551.14 gi|433592096|ref|YP_007281592.1| - 0.07 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF3040 PF11239.8 gi|433592096|ref|YP_007281592.1| - 0.13 12.6 0.2 0.27 11.5 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) PTPS PF01242.19 gi|433592097|ref|YP_007281593.1| - 3.2e-22 78.8 0.0 4.2e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase GYD PF08734.11 gi|433592097|ref|YP_007281593.1| - 0.13 12.2 0.1 0.18 11.8 0.1 1.3 1 0 0 1 1 1 0 GYD domain Radical_SAM PF04055.21 gi|433592098|ref|YP_007281594.1| - 6.4e-21 75.5 0.3 4.3e-20 72.7 0.3 2.1 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|433592098|ref|YP_007281594.1| - 3.4e-13 49.7 0.0 9e-13 48.4 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|433592098|ref|YP_007281594.1| - 2.2e-10 41.0 0.0 3.3e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|433592098|ref|YP_007281594.1| - 0.004 17.1 0.3 0.014 15.3 0.3 1.9 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases QueC PF06508.13 gi|433592099|ref|YP_007281595.1| - 8.9e-75 250.8 0.0 1e-74 250.6 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|433592099|ref|YP_007281595.1| - 1.5e-05 24.7 0.0 2.9e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|433592099|ref|YP_007281595.1| - 0.00018 20.5 0.0 0.00023 20.1 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|433592099|ref|YP_007281595.1| - 0.00019 21.2 0.1 0.00026 20.8 0.1 1.1 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|433592099|ref|YP_007281595.1| - 0.002 17.3 0.0 0.0031 16.7 0.0 1.4 1 1 0 1 1 1 1 NAD synthase TusA PF01206.17 gi|433592100|ref|YP_007281596.1| - 3.1e-08 33.3 0.0 3.5e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|433592103|ref|YP_007281599.1| - 1.3e-84 278.1 22.3 6.2e-26 90.1 0.8 4.1 4 0 0 4 4 4 4 Uncharacterized conserved protein (DUF2249) Fe-ADH PF00465.19 gi|433592105|ref|YP_007281601.1| - 2.9e-61 207.3 7.2 3.5e-61 207.0 7.2 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|433592105|ref|YP_007281601.1| - 1.3e-12 48.0 0.3 2.1e-06 27.6 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase FrhB_FdhB_N PF04422.13 gi|433592105|ref|YP_007281601.1| - 0.1 12.8 0.8 0.37 11.0 0.2 2.2 3 0 0 3 3 3 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term BKACE PF05853.12 gi|433592106|ref|YP_007281602.1| - 0.00039 19.8 0.0 0.00074 18.9 0.0 1.5 1 1 0 1 1 1 1 beta-keto acid cleavage enzyme NTP_transf_3 PF12804.7 gi|433592107|ref|YP_007281603.1| - 2.7e-37 128.6 3.7 3.8e-37 128.1 3.7 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|433592107|ref|YP_007281603.1| - 0.00017 21.6 0.0 0.0018 18.2 0.0 2.1 2 1 0 2 2 2 1 Cytidylyltransferase IspD PF01128.19 gi|433592107|ref|YP_007281603.1| - 0.04 13.7 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Molybdopterin PF00384.22 gi|433592109|ref|YP_007281605.1| - 5.8e-77 259.5 0.0 7.3e-77 259.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|433592109|ref|YP_007281605.1| - 2.6e-28 98.3 0.2 5.2e-28 97.3 0.2 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|433592109|ref|YP_007281605.1| - 3.3e-14 52.6 0.4 8e-14 51.4 0.4 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Ag332 PF04671.12 gi|433592109|ref|YP_007281605.1| - 0.51 10.3 3.8 1.4 8.9 3.8 1.8 1 0 0 1 1 1 0 Erythrocyte membrane-associated giant protein antigen 332 Auto_anti-p27 PF06677.12 gi|433592110|ref|YP_007281606.1| - 0.0024 18.0 1.4 0.067 13.4 0.3 2.6 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc-ribbons_6 PF07191.12 gi|433592110|ref|YP_007281606.1| - 0.073 13.1 1.7 0.13 12.2 1.7 1.4 1 0 0 1 1 1 0 zinc-ribbons PQQ PF01011.21 gi|433592112|ref|YP_007281608.1| - 1.7e-21 75.1 7.9 7.1e-05 22.5 0.0 7.6 7 0 0 7 7 7 5 PQQ enzyme repeat PQQ_2 PF13360.6 gi|433592112|ref|YP_007281608.1| - 2.1e-20 73.3 8.2 3.7e-11 43.1 0.2 3.2 2 1 0 3 3 3 2 PQQ-like domain PQQ_3 PF13570.6 gi|433592112|ref|YP_007281608.1| - 6.8e-10 39.1 37.3 0.0002 21.8 0.3 8.2 9 1 0 9 9 9 4 PQQ-like domain Copper-bind PF00127.20 gi|433592113|ref|YP_007281609.1| - 1.1e-08 35.4 0.0 2.8e-06 27.7 0.0 2.5 2 0 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|433592113|ref|YP_007281609.1| - 0.31 10.9 7.7 0.7 9.8 7.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence EamA PF00892.20 gi|433592114|ref|YP_007281610.1| - 2.4e-26 92.5 32.0 1.1e-13 51.5 9.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|433592114|ref|YP_007281610.1| - 0.0084 15.5 8.8 0.59 9.4 0.3 2.2 2 0 0 2 2 2 2 Triose-phosphate Transporter family NosL PF05573.12 gi|433592115|ref|YP_007281611.1| - 3.2e-09 37.2 0.1 5.9e-09 36.4 0.1 1.4 1 1 0 1 1 1 1 NosL Polyketide_cyc PF03364.20 gi|433592116|ref|YP_007281612.1| - 7e-08 32.7 0.0 9.3e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport HTH_24 PF13412.6 gi|433592117|ref|YP_007281613.1| - 1.2e-13 50.4 0.0 2.2e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|433592117|ref|YP_007281613.1| - 4.7e-11 42.5 0.1 8.2e-11 41.7 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|433592117|ref|YP_007281613.1| - 5.8e-09 35.6 0.0 1.2e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|433592117|ref|YP_007281613.1| - 2.2e-08 33.9 0.1 1.1e-07 31.7 0.0 2.2 1 1 1 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|433592117|ref|YP_007281613.1| - 3.2e-07 30.0 0.0 5.7e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|433592117|ref|YP_007281613.1| - 2.1e-06 27.4 0.0 4.2e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.6 gi|433592117|ref|YP_007281613.1| - 8.4e-06 25.7 0.0 1.8e-05 24.6 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|433592117|ref|YP_007281613.1| - 1.1e-05 25.1 0.0 2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|433592117|ref|YP_007281613.1| - 2.3e-05 24.5 0.1 5.4e-05 23.3 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|433592117|ref|YP_007281613.1| - 2.9e-05 23.8 0.0 5.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|433592117|ref|YP_007281613.1| - 3.9e-05 23.5 0.0 0.00012 21.9 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|433592117|ref|YP_007281613.1| - 4.9e-05 23.1 0.0 0.00062 19.6 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|433592117|ref|YP_007281613.1| - 6.8e-05 22.8 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.12 gi|433592117|ref|YP_007281613.1| - 7.7e-05 23.0 0.0 0.00013 22.3 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_Crp_2 PF13545.6 gi|433592117|ref|YP_007281613.1| - 0.00015 21.7 0.0 0.00028 20.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|433592117|ref|YP_007281613.1| - 0.00016 22.0 0.0 0.0004 20.7 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.6 gi|433592117|ref|YP_007281613.1| - 0.00027 20.9 0.0 0.0004 20.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 gi|433592117|ref|YP_007281613.1| - 0.00046 19.8 0.5 0.0012 18.5 0.1 1.9 3 0 0 3 3 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|433592117|ref|YP_007281613.1| - 0.00066 19.5 0.1 0.0012 18.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|433592117|ref|YP_007281613.1| - 0.0007 19.7 0.0 0.0015 18.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain LacI PF00356.21 gi|433592117|ref|YP_007281613.1| - 0.0016 18.2 0.0 0.028 14.2 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_45 PF14947.6 gi|433592117|ref|YP_007281613.1| - 0.0024 17.8 0.0 0.0042 17.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Sigma70_r4_2 PF08281.12 gi|433592117|ref|YP_007281613.1| - 0.0089 15.7 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Mga PF08280.11 gi|433592117|ref|YP_007281613.1| - 0.015 15.4 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_27 PF13463.6 gi|433592117|ref|YP_007281613.1| - 0.018 15.5 0.1 0.045 14.2 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|433592117|ref|YP_007281613.1| - 0.022 14.6 0.1 0.049 13.4 0.1 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_1 PF00126.27 gi|433592117|ref|YP_007281613.1| - 0.028 14.4 0.1 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_6 PF01418.17 gi|433592117|ref|YP_007281613.1| - 0.03 14.3 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_47 PF16221.5 gi|433592117|ref|YP_007281613.1| - 0.032 13.8 0.0 0.063 12.8 0.0 1.5 1 0 0 1 1 1 0 winged helix-turn-helix DUF4110 PF13422.6 gi|433592117|ref|YP_007281613.1| - 0.044 13.9 0.0 0.076 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) TFIIE_alpha PF02002.17 gi|433592117|ref|YP_007281613.1| - 0.054 13.4 0.1 0.073 12.9 0.1 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit RPA_C PF08784.11 gi|433592117|ref|YP_007281613.1| - 0.056 14.1 0.0 0.1 13.2 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_32 PF13565.6 gi|433592117|ref|YP_007281613.1| - 0.06 14.0 0.1 0.22 12.2 0.1 1.9 1 1 1 2 2 2 0 Homeodomain-like domain TetR_N PF00440.23 gi|433592117|ref|YP_007281613.1| - 0.063 13.1 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_3 PF01381.22 gi|433592117|ref|YP_007281613.1| - 0.069 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4 PF04545.16 gi|433592117|ref|YP_007281613.1| - 0.072 12.6 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 TnsD PF15978.5 gi|433592117|ref|YP_007281613.1| - 0.097 11.6 0.1 0.11 11.5 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_Tnp_ISL3 PF13542.6 gi|433592117|ref|YP_007281613.1| - 0.11 11.9 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_40 PF14493.6 gi|433592117|ref|YP_007281613.1| - 0.11 12.9 0.0 0.19 12.2 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Phage_NinH PF06322.11 gi|433592117|ref|YP_007281613.1| - 0.13 12.1 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Phage NinH protein HTH_30 PF13556.6 gi|433592117|ref|YP_007281613.1| - 0.17 11.7 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain TctB PF07331.11 gi|433592118|ref|YP_007281614.1| - 0.047 14.0 3.4 0.074 13.3 3.4 1.3 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family TPP_enzyme_C PF02775.21 gi|433592119|ref|YP_007281615.1| - 1.7e-31 109.1 0.1 2.6e-31 108.5 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|433592119|ref|YP_007281615.1| - 0.014 15.5 1.6 0.041 14.0 1.6 1.9 1 1 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF2487 PF10673.9 gi|433592119|ref|YP_007281615.1| - 0.18 11.8 0.0 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2487) POR_N PF01855.19 gi|433592120|ref|YP_007281616.1| - 1.3e-49 169.0 0.0 2.8e-49 167.9 0.0 1.5 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|433592120|ref|YP_007281616.1| - 1.2e-45 155.7 0.0 2.5e-45 154.7 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|433592120|ref|YP_007281616.1| - 1.7e-11 44.3 0.0 3.3e-11 43.4 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|433592120|ref|YP_007281616.1| - 0.005 16.5 0.1 0.0097 15.5 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|433592120|ref|YP_007281616.1| - 0.028 14.3 0.0 0.065 13.1 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain DUF1664 PF07889.12 gi|433592120|ref|YP_007281616.1| - 0.1 12.7 0.1 1.1 9.4 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) PHP PF02811.19 gi|433592121|ref|YP_007281617.1| - 1.6e-05 25.3 0.0 4.2e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 PHP domain LUD_dom PF02589.15 gi|433592122|ref|YP_007281618.1| - 3.6e-39 134.4 0.2 4.1e-39 134.3 0.2 1.1 1 0 0 1 1 1 1 LUD domain OKR_DC_1_N PF03709.15 gi|433592122|ref|YP_007281618.1| - 0.012 15.8 2.0 0.018 15.3 1.0 2.0 2 1 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain Secretin_N PF03958.17 gi|433592122|ref|YP_007281618.1| - 0.12 12.8 1.7 0.15 12.5 0.3 2.1 2 1 0 2 2 2 0 Bacterial type II/III secretion system short domain LisH PF08513.11 gi|433592123|ref|YP_007281619.1| - 0.058 13.4 0.0 0.17 11.9 0.0 1.8 1 0 0 1 1 1 0 LisH UbiD PF01977.16 gi|433592124|ref|YP_007281620.1| - 2.4e-98 329.7 0.0 3.2e-98 329.3 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD PF01977.16 gi|433592125|ref|YP_007281621.1| - 9.8e-29 100.4 0.0 1.2e-28 100.1 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AMP-binding PF00501.28 gi|433592126|ref|YP_007281622.1| - 2.8e-88 296.3 0.0 3.6e-88 296.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433592126|ref|YP_007281622.1| - 1.1e-21 77.6 1.1 2.5e-21 76.5 1.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|433592127|ref|YP_007281623.1| - 1.7e-30 106.2 1.7 3.1e-30 105.3 1.7 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|433592127|ref|YP_007281623.1| - 8.8e-25 87.6 4.6 2.2e-24 86.3 4.6 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433592127|ref|YP_007281623.1| - 2.3e-23 82.2 0.0 5.1e-23 81.1 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|433592127|ref|YP_007281623.1| - 2.1e-18 66.9 1.3 4.3e-18 65.9 1.3 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain CPSase_L_D2 PF02786.17 gi|433592128|ref|YP_007281624.1| - 5.9e-77 257.9 0.1 1e-76 257.2 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|433592128|ref|YP_007281624.1| - 5.9e-44 149.1 0.0 1.2e-43 148.1 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|433592128|ref|YP_007281624.1| - 1e-36 125.3 0.0 2.3e-36 124.2 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|433592128|ref|YP_007281624.1| - 1.6e-18 66.3 3.3 5.1e-18 64.7 2.4 2.4 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|433592128|ref|YP_007281624.1| - 2e-10 40.3 0.6 3e-05 23.7 0.0 3.0 2 1 1 3 3 3 2 Biotin-lipoyl like ATP-grasp PF02222.22 gi|433592128|ref|YP_007281624.1| - 4.4e-10 39.4 0.1 1e-09 38.2 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|433592128|ref|YP_007281624.1| - 6.9e-09 35.5 0.0 1.4e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus HlyD_3 PF13437.6 gi|433592128|ref|YP_007281624.1| - 0.00035 21.2 0.8 0.89 10.3 0.1 3.2 3 0 0 3 3 3 2 HlyD family secretion protein GARS_A PF01071.19 gi|433592128|ref|YP_007281624.1| - 0.00086 19.1 0.0 0.0019 18.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 gi|433592128|ref|YP_007281624.1| - 0.00093 19.3 0.0 0.0015 18.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain HlyD_D23 PF16576.5 gi|433592128|ref|YP_007281624.1| - 0.0021 17.3 0.4 1.2 8.3 0.1 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATPgrasp_Ter PF15632.6 gi|433592128|ref|YP_007281624.1| - 0.0093 15.7 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon PTS_EIIA_1 PF00358.20 gi|433592128|ref|YP_007281624.1| - 0.012 15.3 0.4 0.11 12.3 0.1 2.6 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 gi|433592128|ref|YP_007281624.1| - 0.015 15.2 1.4 0.049 13.6 0.4 2.3 3 0 0 3 3 3 0 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 gi|433592128|ref|YP_007281624.1| - 0.021 14.7 0.7 0.047 13.6 0.7 1.5 1 0 0 1 1 1 0 Glycine cleavage H-protein Carboxyl_trans PF01039.22 gi|433592129|ref|YP_007281625.1| - 1.5e-128 429.6 0.0 1.9e-128 429.2 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MaoC_dehydratas PF01575.19 gi|433592130|ref|YP_007281626.1| - 1.7e-25 88.9 0.1 2.2e-25 88.6 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|433592130|ref|YP_007281626.1| - 0.0009 19.4 0.1 0.0028 17.8 0.1 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Methyltransf_11 PF08241.12 gi|433592131|ref|YP_007281627.1| - 9e-19 67.9 0.0 1.9e-18 66.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433592131|ref|YP_007281627.1| - 5.7e-15 55.8 0.1 3.3e-14 53.4 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433592131|ref|YP_007281627.1| - 8.8e-09 35.4 0.0 1.1e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433592131|ref|YP_007281627.1| - 2.2e-07 30.8 0.0 1.1e-06 28.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433592131|ref|YP_007281627.1| - 2.7e-07 31.2 0.0 6.1e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433592131|ref|YP_007281627.1| - 1.2e-06 28.0 0.0 3.1e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 gi|433592131|ref|YP_007281627.1| - 0.00041 19.5 0.0 0.00057 19.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.15 gi|433592131|ref|YP_007281627.1| - 0.0058 16.5 0.0 0.008 16.1 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_33 PF10017.9 gi|433592131|ref|YP_007281627.1| - 0.081 12.1 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent HpcH_HpaI PF03328.14 gi|433592132|ref|YP_007281628.1| - 6.6e-59 198.7 4.6 8.2e-59 198.4 4.6 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|433592132|ref|YP_007281628.1| - 1.6e-14 53.8 0.0 8.6e-09 35.0 0.0 2.1 1 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold PK PF00224.21 gi|433592132|ref|YP_007281628.1| - 0.00099 18.1 0.0 0.0015 17.5 0.0 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PadR PF03551.14 gi|433592133|ref|YP_007281629.1| - 5.7e-17 61.4 1.4 7.6e-17 61.0 1.4 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|433592133|ref|YP_007281629.1| - 0.0091 16.0 0.1 0.012 15.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF3886 PF13025.6 gi|433592133|ref|YP_007281629.1| - 0.014 15.6 0.2 0.021 15.0 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3886) DUF1495 PF07381.11 gi|433592133|ref|YP_007281629.1| - 0.019 14.8 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) polyprenyl_synt PF00348.17 gi|433592135|ref|YP_007281631.1| - 0.002 17.3 0.0 0.0042 16.2 0.0 1.4 2 0 0 2 2 2 1 Polyprenyl synthetase TetR_C_6 PF13977.6 gi|433592136|ref|YP_007281632.1| - 5.9e-20 71.6 2.2 5.9e-20 71.6 2.2 1.6 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|433592136|ref|YP_007281632.1| - 7.8e-11 41.6 0.8 1.3e-10 40.9 0.8 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|433592136|ref|YP_007281632.1| - 1e-05 25.8 0.1 2.4e-05 24.6 0.1 1.7 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|433592136|ref|YP_007281632.1| - 0.009 16.1 0.3 0.022 14.8 0.1 2.0 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain CorA PF01544.18 gi|433592136|ref|YP_007281632.1| - 0.023 14.0 1.1 0.027 13.8 1.1 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TetR_C_5 PF08360.11 gi|433592136|ref|YP_007281632.1| - 0.048 13.8 0.0 0.082 13.1 0.0 1.4 1 1 0 1 1 1 0 QacR-like protein, C-terminal region TetR_C_31 PF17940.1 gi|433592136|ref|YP_007281632.1| - 0.55 10.5 7.8 0.12 12.6 3.1 2.3 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain DZR PF12773.7 gi|433592137|ref|YP_007281633.1| - 8.9e-05 22.4 1.1 0.00013 21.9 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|433592137|ref|YP_007281633.1| - 0.00048 19.7 1.3 0.00072 19.2 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|433592137|ref|YP_007281633.1| - 0.0061 15.9 3.2 0.011 15.1 3.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|433592137|ref|YP_007281633.1| - 0.011 16.5 0.2 0.014 16.1 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbon family zinc_ribbon_9 PF14369.6 gi|433592137|ref|YP_007281633.1| - 0.039 14.2 6.1 2.5 8.4 1.2 2.2 2 0 0 2 2 2 0 zinc-ribbon TM2 PF05154.16 gi|433592137|ref|YP_007281633.1| - 0.041 14.2 0.4 0.086 13.2 0.4 1.5 1 0 0 1 1 1 0 TM2 domain Zn-ribbon_8 PF09723.10 gi|433592137|ref|YP_007281633.1| - 3.3 7.9 5.0 1.4 9.1 1.9 1.8 1 1 1 2 2 2 0 Zinc ribbon domain Bac_luciferase PF00296.20 gi|433592138|ref|YP_007281634.1| - 2.5e-33 115.9 9.2 2.9e-33 115.7 9.2 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Lon_C PF05362.13 gi|433592139|ref|YP_007281635.1| - 2e-35 122.2 3.8 3.1e-35 121.6 3.8 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|433592139|ref|YP_007281635.1| - 3.6e-29 102.0 0.0 1.9e-22 79.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|433592139|ref|YP_007281635.1| - 1.9e-17 63.4 0.1 6.3e-10 38.8 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|433592139|ref|YP_007281635.1| - 3.1e-15 56.3 0.0 4.5e-09 36.2 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|433592139|ref|YP_007281635.1| - 1.6e-10 41.1 0.0 0.00071 19.6 0.0 2.7 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|433592139|ref|YP_007281635.1| - 1e-09 38.3 0.3 2.4e-09 37.1 0.3 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase RuvB_N PF05496.12 gi|433592139|ref|YP_007281635.1| - 1.8e-06 27.8 0.1 0.0018 18.1 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|433592139|ref|YP_007281635.1| - 4.9e-06 27.0 0.0 0.057 13.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|433592139|ref|YP_007281635.1| - 5.9e-06 25.5 0.1 0.082 12.0 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain TIP49 PF06068.13 gi|433592139|ref|YP_007281635.1| - 0.0001 21.7 0.1 0.019 14.2 0.1 2.3 2 0 0 2 2 2 1 TIP49 P-loop domain Sigma54_activ_2 PF14532.6 gi|433592139|ref|YP_007281635.1| - 0.00013 22.1 0.0 0.18 11.9 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|433592139|ref|YP_007281635.1| - 0.00025 20.9 0.0 0.55 10.1 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|433592139|ref|YP_007281635.1| - 0.00041 19.9 0.0 0.00094 18.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|433592139|ref|YP_007281635.1| - 0.0012 19.1 0.0 0.46 10.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|433592139|ref|YP_007281635.1| - 0.0017 18.7 0.0 0.0099 16.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|433592139|ref|YP_007281635.1| - 0.011 15.2 0.0 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_30 PF13604.6 gi|433592139|ref|YP_007281635.1| - 0.014 15.1 0.0 0.15 11.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|433592139|ref|YP_007281635.1| - 0.015 14.5 0.0 0.032 13.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|433592139|ref|YP_007281635.1| - 0.016 15.3 0.0 3.2 7.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|433592139|ref|YP_007281635.1| - 0.018 15.2 0.0 0.061 13.5 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_10 PF12846.7 gi|433592139|ref|YP_007281635.1| - 0.018 13.9 0.0 0.04 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_PrkA PF08298.11 gi|433592139|ref|YP_007281635.1| - 0.025 13.5 0.1 0.7 8.7 0.0 2.1 2 0 0 2 2 2 0 PrkA AAA domain IstB_IS21 PF01695.17 gi|433592139|ref|YP_007281635.1| - 0.029 14.1 0.0 0.066 12.9 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|433592139|ref|YP_007281635.1| - 0.031 14.2 0.0 0.068 13.1 0.0 1.6 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|433592139|ref|YP_007281635.1| - 0.04 14.4 0.0 0.12 12.8 0.0 1.8 1 0 0 1 1 1 0 ABC transporter MCM_lid PF17855.1 gi|433592139|ref|YP_007281635.1| - 0.07 13.6 0.2 0.3 11.5 0.0 2.1 1 1 1 2 2 2 0 MCM AAA-lid domain TrwB_AAD_bind PF10412.9 gi|433592139|ref|YP_007281635.1| - 0.071 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TetR_C_6 PF13977.6 gi|433592140|ref|YP_007281636.1| - 1.1e-12 48.1 1.3 1.1e-12 48.1 1.3 1.4 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|433592140|ref|YP_007281636.1| - 3.3e-09 36.4 0.0 5.9e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 gi|433592140|ref|YP_007281636.1| - 5e-06 26.7 1.1 9.4e-06 25.8 1.1 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|433592140|ref|YP_007281636.1| - 0.00034 20.8 0.4 0.00065 19.9 0.4 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|433592140|ref|YP_007281636.1| - 0.0015 18.6 0.4 0.0051 16.9 0.4 2.0 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|433592140|ref|YP_007281636.1| - 0.095 12.8 0.1 0.17 12.0 0.1 1.5 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain MMPL PF03176.15 gi|433592141|ref|YP_007281637.1| - 4.4e-37 127.8 35.9 4.4e-20 71.9 18.9 4.5 3 1 2 5 5 5 2 MMPL family Sterol-sensing PF12349.8 gi|433592141|ref|YP_007281637.1| - 1e-08 35.1 10.7 0.00037 20.4 1.6 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|433592141|ref|YP_007281637.1| - 3.5e-05 22.1 17.1 6e-05 21.3 4.7 4.0 3 2 2 5 5 5 3 Patched family SecD_SecF PF02355.16 gi|433592141|ref|YP_007281637.1| - 0.00016 21.1 22.2 0.00017 21.1 5.1 2.6 2 0 0 2 2 2 2 Protein export membrane protein Atg14 PF10186.9 gi|433592141|ref|YP_007281637.1| - 0.089 11.9 2.3 0.33 10.0 2.3 1.8 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Ntox1 PF15500.6 gi|433592141|ref|YP_007281637.1| - 0.91 9.9 3.4 0.66 10.4 1.1 2.1 2 0 0 2 2 2 0 Putative RNase-like toxin, toxin_1 MerR-DNA-bind PF09278.11 gi|433592141|ref|YP_007281637.1| - 3.1 8.4 5.5 34 5.1 1.7 2.7 2 0 0 2 2 2 0 MerR, DNA binding ZapB PF06005.12 gi|433592141|ref|YP_007281637.1| - 4.8 7.7 5.9 49 4.5 0.3 3.0 2 0 0 2 2 2 0 Cell division protein ZapB Chorismate_synt PF01264.21 gi|433592142|ref|YP_007281638.1| - 1.5e-122 408.4 0.0 1.7e-122 408.2 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase MFS_1 PF07690.16 gi|433592143|ref|YP_007281639.1| - 2.7e-58 197.6 66.2 3.8e-46 157.7 35.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|433592143|ref|YP_007281639.1| - 0.00044 19.1 13.2 0.0098 14.7 3.2 2.7 3 0 0 3 3 3 2 LacY proton/sugar symporter OATP PF03137.20 gi|433592143|ref|YP_007281639.1| - 0.0015 16.9 1.3 0.0015 16.9 1.3 2.1 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family Sugar_tr PF00083.24 gi|433592143|ref|YP_007281639.1| - 0.013 14.3 34.2 0.017 14.0 1.5 4.3 2 2 1 4 4 4 0 Sugar (and other) transporter DUF4381 PF14316.6 gi|433592143|ref|YP_007281639.1| - 1.7 8.9 3.1 5.7 7.2 3.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) DoxX PF07681.12 gi|433592144|ref|YP_007281640.1| - 2.9e-10 40.6 12.7 2.9e-10 40.6 12.7 2.2 1 1 1 2 2 2 1 DoxX DoxD PF04173.13 gi|433592144|ref|YP_007281640.1| - 0.026 14.4 5.4 0.042 13.8 5.4 1.4 1 0 0 1 1 1 0 TQO small subunit DoxD Thiolase_N PF00108.23 gi|433592145|ref|YP_007281641.1| - 4.8e-74 249.0 2.9 6.6e-74 248.5 2.9 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|433592145|ref|YP_007281641.1| - 2.8e-41 140.0 0.1 5.5e-41 139.1 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|433592145|ref|YP_007281641.1| - 6.6e-08 32.4 0.4 1.4e-07 31.3 0.4 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|433592145|ref|YP_007281641.1| - 0.077 12.9 4.0 0.56 10.1 0.4 2.8 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EPSP_synthase PF00275.20 gi|433592146|ref|YP_007281642.1| - 6.2e-110 367.8 0.0 7.5e-110 367.5 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DUF2092 PF09865.9 gi|433592147|ref|YP_007281643.1| - 5.2e-05 22.7 0.0 0.00012 21.5 0.0 1.6 1 1 0 1 1 1 1 Predicted periplasmic protein (DUF2092) Peptidase_M24 PF00557.24 gi|433592148|ref|YP_007281644.1| - 2.1e-48 164.8 1.9 2.8e-48 164.4 1.4 1.4 2 0 0 2 2 2 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|433592148|ref|YP_007281644.1| - 1.2e-10 42.1 0.3 5.5e-08 33.5 0.1 2.4 1 1 1 2 2 2 2 Creatinase/Prolidase N-terminal domain TAT_signal PF10518.9 gi|433592149|ref|YP_007281645.1| - 0.023 14.5 3.4 0.031 14.1 3.4 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Aldo_ket_red PF00248.21 gi|433592150|ref|YP_007281646.1| - 5.3e-74 249.1 0.0 6.3e-74 248.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Sacchrp_dh_NADP PF03435.18 gi|433592150|ref|YP_007281646.1| - 0.01 16.1 0.0 0.36 11.1 0.0 2.3 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Terminase_1 PF03354.15 gi|433592150|ref|YP_007281646.1| - 0.032 12.8 0.0 0.046 12.3 0.0 1.1 1 0 0 1 1 1 0 Phage Terminase TrkA_N PF02254.18 gi|433592151|ref|YP_007281647.1| - 9.9e-38 129.0 13.6 5.9e-21 74.9 1.2 3.3 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|433592151|ref|YP_007281647.1| - 1.4e-23 82.5 1.3 4.7e-13 48.8 0.1 3.0 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.16 gi|433592151|ref|YP_007281647.1| - 0.1 12.6 2.7 0.21 11.6 2.7 1.5 1 0 0 1 1 1 0 Ion channel Bac_luciferase PF00296.20 gi|433592152|ref|YP_007281648.1| - 1.8e-50 172.2 5.5 4.2e-50 171.0 5.5 1.5 1 1 0 1 1 1 1 Luciferase-like monooxygenase DUF4142 PF13628.6 gi|433592152|ref|YP_007281648.1| - 0.14 12.4 0.1 0.22 11.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4142) ABC_tran PF00005.27 gi|433592153|ref|YP_007281649.1| - 2.3e-27 96.2 0.0 4.1e-27 95.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433592153|ref|YP_007281649.1| - 4.5e-14 53.0 0.1 3.6e-08 33.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|433592153|ref|YP_007281649.1| - 0.00016 21.5 0.5 0.00066 19.5 0.2 2.0 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|433592153|ref|YP_007281649.1| - 0.00064 19.5 0.0 0.84 9.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|433592153|ref|YP_007281649.1| - 0.0021 18.6 0.2 0.0031 18.1 0.2 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|433592153|ref|YP_007281649.1| - 0.0041 16.8 0.1 0.0082 15.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|433592153|ref|YP_007281649.1| - 0.0052 16.2 0.0 0.0094 15.3 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|433592153|ref|YP_007281649.1| - 0.0082 16.1 0.1 0.014 15.3 0.1 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|433592153|ref|YP_007281649.1| - 0.009 15.8 0.1 0.12 12.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433592153|ref|YP_007281649.1| - 0.01 16.2 0.2 0.018 15.4 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|433592153|ref|YP_007281649.1| - 0.012 15.8 0.0 0.025 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|433592153|ref|YP_007281649.1| - 0.016 15.2 0.2 0.03 14.2 0.2 1.4 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|433592153|ref|YP_007281649.1| - 0.016 14.8 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|433592153|ref|YP_007281649.1| - 0.017 15.4 0.0 0.026 14.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|433592153|ref|YP_007281649.1| - 0.023 14.4 0.1 0.92 9.2 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|433592153|ref|YP_007281649.1| - 0.025 14.6 0.0 0.64 10.0 0.1 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SMC_N PF02463.19 gi|433592153|ref|YP_007281649.1| - 0.047 13.1 0.0 0.51 9.7 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_28 PF13521.6 gi|433592153|ref|YP_007281649.1| - 0.047 13.9 0.7 0.078 13.2 0.5 1.7 1 1 0 1 1 1 0 AAA domain DUF4162 PF13732.6 gi|433592153|ref|YP_007281649.1| - 0.053 14.2 0.0 0.092 13.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA PF00004.29 gi|433592153|ref|YP_007281649.1| - 0.056 13.9 0.0 0.14 12.6 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|433592153|ref|YP_007281649.1| - 0.074 13.1 0.2 0.2 11.8 0.1 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|433592153|ref|YP_007281649.1| - 0.092 12.5 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|433592153|ref|YP_007281649.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|433592153|ref|YP_007281649.1| - 0.12 11.9 0.7 0.41 10.2 0.2 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|433592153|ref|YP_007281649.1| - 0.15 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_7 PF12775.7 gi|433592153|ref|YP_007281649.1| - 0.25 10.8 0.0 0.38 10.2 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC2_membrane PF01061.24 gi|433592154|ref|YP_007281650.1| - 1.4e-25 89.9 7.7 2.1e-25 89.4 7.7 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|433592154|ref|YP_007281650.1| - 7.4e-13 48.3 3.8 7.4e-13 48.3 3.8 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|433592154|ref|YP_007281650.1| - 1.2e-06 28.0 9.5 1.2e-06 28.0 9.5 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein OppC_N PF12911.7 gi|433592154|ref|YP_007281650.1| - 0.014 15.3 13.6 0.02 14.9 0.4 3.6 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C 12TM_1 PF09847.9 gi|433592154|ref|YP_007281650.1| - 0.018 14.2 0.9 0.026 13.6 0.9 1.1 1 0 0 1 1 1 0 Membrane protein of 12 TMs TruD PF01142.18 gi|433592155|ref|YP_007281651.1| - 3.1e-167 556.6 0.0 3.5e-167 556.5 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) R3H PF01424.22 gi|433592155|ref|YP_007281651.1| - 0.12 12.4 0.5 1.3 9.1 0.1 2.3 2 0 0 2 2 2 0 R3H domain ABC2_membrane_3 PF12698.7 gi|433592158|ref|YP_007281654.1| - 0.014 14.5 6.1 0.022 13.9 6.1 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein SurE PF01975.17 gi|433592159|ref|YP_007281655.1| - 2.5e-50 171.0 0.0 3.4e-50 170.6 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE T2SSE PF00437.20 gi|433592160|ref|YP_007281656.1| - 2e-44 151.7 0.0 2.9e-44 151.2 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|433592160|ref|YP_007281656.1| - 3.3e-06 26.8 0.0 6.1e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|433592160|ref|YP_007281656.1| - 0.015 15.8 0.0 0.032 14.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter PCMT PF01135.19 gi|433592160|ref|YP_007281656.1| - 0.031 14.0 0.0 0.069 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AAA_7 PF12775.7 gi|433592160|ref|YP_007281656.1| - 0.042 13.4 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|433592160|ref|YP_007281656.1| - 0.11 11.8 0.0 0.3 10.4 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.12 gi|433592160|ref|YP_007281656.1| - 0.17 11.1 0.0 0.34 10.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin T2SSF PF00482.23 gi|433592161|ref|YP_007281657.1| - 1.4e-31 109.1 5.6 1.8e-16 60.2 0.2 2.8 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|433592161|ref|YP_007281657.1| - 5.1e-05 22.2 0.1 0.16 10.7 0.0 3.1 3 0 0 3 3 3 3 Predicted membrane protein (DUF2207) Big_1 PF02369.16 gi|433592162|ref|YP_007281658.1| - 2.4e-08 33.9 0.1 2.4e-08 33.9 0.1 3.9 4 1 0 4 4 4 2 Bacterial Ig-like domain (group 1) Pilin_N PF07790.11 gi|433592162|ref|YP_007281658.1| - 0.00028 21.7 0.1 0.0014 19.5 0.0 2.2 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Invasin_D3 PF09134.10 gi|433592162|ref|YP_007281658.1| - 0.0033 17.7 8.1 0.0062 16.8 0.1 3.3 3 0 0 3 3 3 1 Invasin, domain 3 DUF756 PF05506.12 gi|433592162|ref|YP_007281658.1| - 0.11 13.4 0.3 1.9 9.4 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF756) MG4 PF17789.1 gi|433592162|ref|YP_007281658.1| - 0.2 11.8 0.0 0.55 10.4 0.0 1.7 1 0 0 1 1 1 0 Macroglobulin domain MG4 DUF2103 PF09876.9 gi|433592163|ref|YP_007281659.1| - 7e-40 135.0 0.2 1.2e-39 134.3 0.2 1.4 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) Ribosomal_L37ae PF01780.19 gi|433592165|ref|YP_007281661.1| - 1.4e-22 79.6 0.2 1.7e-22 79.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.13 gi|433592166|ref|YP_007281662.1| - 1.9e-10 40.2 6.8 2.3e-10 39.9 6.8 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|433592166|ref|YP_007281662.1| - 5.9e-05 22.3 0.2 0.0044 16.4 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|433592166|ref|YP_007281662.1| - 0.00072 19.6 0.5 0.00074 19.5 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|433592166|ref|YP_007281662.1| - 0.00094 18.7 1.7 0.21 11.2 0.4 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|433592166|ref|YP_007281662.1| - 0.0036 17.3 4.6 0.077 13.0 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-CHCC PF10276.9 gi|433592166|ref|YP_007281662.1| - 0.0037 17.3 0.5 0.0065 16.5 0.5 1.4 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_2 PF13240.6 gi|433592166|ref|YP_007281662.1| - 0.0057 16.3 2.2 0.17 11.6 0.3 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|433592166|ref|YP_007281662.1| - 0.0067 16.4 1.1 0.014 15.4 1.1 1.6 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|433592166|ref|YP_007281662.1| - 0.0078 15.9 1.0 0.7 9.7 2.3 2.1 1 1 1 2 2 2 2 A2L zinc ribbon domain YacG PF03884.14 gi|433592166|ref|YP_007281662.1| - 0.012 15.3 0.2 0.33 10.7 0.0 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG RNHCP PF12647.7 gi|433592166|ref|YP_007281662.1| - 0.014 15.4 0.3 0.015 15.3 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain Sgf11 PF08209.11 gi|433592166|ref|YP_007281662.1| - 0.017 14.7 2.2 0.84 9.2 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cys_rich_CPXG PF14255.6 gi|433592166|ref|YP_007281662.1| - 0.023 14.6 0.2 0.092 12.7 0.0 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG Lar_restr_allev PF14354.6 gi|433592166|ref|YP_007281662.1| - 0.03 14.7 0.7 0.081 13.3 0.0 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.12 gi|433592166|ref|YP_007281662.1| - 0.036 14.0 0.8 0.056 13.4 0.8 1.3 1 1 0 1 1 1 0 zinc-ribbons Anti-TRAP PF15777.5 gi|433592166|ref|YP_007281662.1| - 0.043 13.8 0.1 0.049 13.6 0.1 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF951 PF06107.11 gi|433592166|ref|YP_007281662.1| - 0.051 13.5 0.5 3 7.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-Di19 PF05605.12 gi|433592166|ref|YP_007281662.1| - 0.059 13.7 0.1 0.48 10.8 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_13 PF09855.9 gi|433592166|ref|YP_007281662.1| - 0.06 13.5 0.7 0.15 12.2 0.1 1.8 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF3268 PF11672.8 gi|433592166|ref|YP_007281662.1| - 0.092 13.1 1.1 0.39 11.1 0.1 1.9 1 1 1 2 2 2 0 zinc-finger-containing domain OrfB_Zn_ribbon PF07282.11 gi|433592166|ref|YP_007281662.1| - 0.12 12.4 3.3 0.19 11.7 2.9 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|433592166|ref|YP_007281662.1| - 0.12 11.9 3.4 0.81 9.3 3.9 1.8 1 1 1 2 2 2 0 TFIIB zinc-binding CpXC PF14353.6 gi|433592166|ref|YP_007281662.1| - 0.17 12.0 1.2 0.43 10.6 0.2 1.8 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|433592166|ref|YP_007281662.1| - 0.22 11.7 4.2 0.52 10.5 4.2 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|433592166|ref|YP_007281662.1| - 0.4 10.6 5.7 17 5.4 5.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Thioredoxin_4 PF13462.6 gi|433592166|ref|YP_007281662.1| - 0.58 10.3 1.8 0.68 10.1 0.0 1.8 1 1 1 2 2 2 0 Thioredoxin Pcc1 PF09341.10 gi|433592167|ref|YP_007281663.1| - 3.5e-10 39.9 0.6 4e-10 39.7 0.6 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF2243 PF10002.9 gi|433592168|ref|YP_007281664.1| - 3.6e-47 160.0 8.2 4.2e-47 159.8 8.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2243) Prefoldin_2 PF01920.20 gi|433592169|ref|YP_007281665.1| - 3e-25 88.2 19.1 3.3e-25 88.1 19.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.17 gi|433592169|ref|YP_007281665.1| - 0.00054 19.9 17.2 0.00096 19.1 5.7 2.7 1 1 2 3 3 3 1 Prefoldin subunit DUF3584 PF12128.8 gi|433592169|ref|YP_007281665.1| - 0.0007 17.3 7.3 0.00083 17.0 7.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) CLZ PF16526.5 gi|433592169|ref|YP_007281665.1| - 0.00097 19.4 3.6 0.00097 19.4 3.6 2.5 2 1 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FlaC_arch PF05377.11 gi|433592169|ref|YP_007281665.1| - 0.0021 18.4 4.4 0.0021 18.4 4.4 2.5 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) DUF5082 PF16888.5 gi|433592169|ref|YP_007281665.1| - 0.0023 18.2 10.6 0.003 17.8 10.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5082) Laminin_II PF06009.12 gi|433592169|ref|YP_007281665.1| - 0.0035 17.4 8.9 0.0046 17.0 8.9 1.2 1 0 0 1 1 1 1 Laminin Domain II XhlA PF10779.9 gi|433592169|ref|YP_007281665.1| - 0.0036 17.5 13.0 0.0078 16.4 1.0 2.3 2 0 0 2 2 2 1 Haemolysin XhlA BRE1 PF08647.11 gi|433592169|ref|YP_007281665.1| - 0.0042 17.1 8.5 0.14 12.2 1.8 2.2 2 0 0 2 2 2 2 BRE1 E3 ubiquitin ligase SASP PF00269.20 gi|433592169|ref|YP_007281665.1| - 0.015 15.3 0.8 0.19 11.7 0.9 2.2 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type PAF-AH_p_II PF03403.13 gi|433592169|ref|YP_007281665.1| - 0.019 13.5 1.7 0.022 13.3 1.7 1.2 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II DUF2379 PF09543.10 gi|433592169|ref|YP_007281665.1| - 0.022 14.9 5.4 0.16 12.2 5.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2379) DHR10 PF18595.1 gi|433592169|ref|YP_007281665.1| - 0.03 14.4 6.6 0.03 14.4 6.6 2.3 1 1 0 2 2 2 0 Designed helical repeat protein 10 domain DUF5344 PF17279.2 gi|433592169|ref|YP_007281665.1| - 0.037 14.6 10.8 0.12 12.9 2.7 2.6 1 1 2 3 3 3 0 Family of unknown function (DUF5344) ERM PF00769.19 gi|433592169|ref|YP_007281665.1| - 0.044 13.6 14.9 0.057 13.2 14.9 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family CorA PF01544.18 gi|433592169|ref|YP_007281665.1| - 0.1 11.9 7.2 0.13 11.5 7.2 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Fijivirus_P9-2 PF06837.11 gi|433592169|ref|YP_007281665.1| - 0.13 11.6 0.1 0.17 11.3 0.1 1.1 1 0 0 1 1 1 0 Fijivirus P9-2 protein HisK_N PF09385.10 gi|433592169|ref|YP_007281665.1| - 0.16 11.9 2.2 1.6 8.7 0.4 2.2 2 0 0 2 2 2 0 Histidine kinase N terminal EzrA PF06160.12 gi|433592169|ref|YP_007281665.1| - 0.17 10.0 12.9 0.25 9.5 12.9 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA FUSC PF04632.12 gi|433592169|ref|YP_007281665.1| - 0.2 10.2 1.7 0.24 9.9 1.7 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF724 PF05266.14 gi|433592169|ref|YP_007281665.1| - 0.23 11.3 11.1 0.29 10.9 11.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF724) TPR_MLP1_2 PF07926.12 gi|433592169|ref|YP_007281665.1| - 0.24 11.5 21.6 1.3 9.1 7.3 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein FapA PF03961.13 gi|433592169|ref|YP_007281665.1| - 0.26 9.9 6.2 0.37 9.4 6.2 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A BRI3BP PF14965.6 gi|433592169|ref|YP_007281665.1| - 0.27 10.7 0.2 0.46 10.0 0.2 1.4 1 0 0 1 1 1 0 Negative regulator of p53/TP53 MCU PF04678.13 gi|433592169|ref|YP_007281665.1| - 0.31 11.1 5.1 0.46 10.6 5.1 1.2 1 0 0 1 1 1 0 Mitochondrial calcium uniporter NPV_P10 PF05531.12 gi|433592169|ref|YP_007281665.1| - 0.37 11.3 7.6 0.54 10.7 0.7 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein WXG100 PF06013.12 gi|433592169|ref|YP_007281665.1| - 0.4 10.9 8.2 3.5 7.9 2.4 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG KfrA_N PF11740.8 gi|433592169|ref|YP_007281665.1| - 0.5 11.1 15.2 1.8 9.2 4.6 2.2 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term HemX PF04375.14 gi|433592169|ref|YP_007281665.1| - 0.52 9.5 16.3 0.35 10.1 1.9 2.0 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Prominin PF05478.11 gi|433592169|ref|YP_007281665.1| - 0.71 7.8 4.9 0.94 7.4 4.9 1.2 1 0 0 1 1 1 0 Prominin Sec34 PF04136.15 gi|433592169|ref|YP_007281665.1| - 0.78 9.6 10.7 0.41 10.5 1.6 2.1 1 1 1 2 2 2 0 Sec34-like family Exonuc_VII_L PF02601.15 gi|433592169|ref|YP_007281665.1| - 0.83 9.2 5.0 1 8.8 5.0 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF1664 PF07889.12 gi|433592169|ref|YP_007281665.1| - 1.1 9.3 9.4 1.7 8.7 1.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Jnk-SapK_ap_N PF09744.9 gi|433592169|ref|YP_007281665.1| - 1.3 9.2 18.3 0.5 10.6 14.8 1.7 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 Spc24 PF08286.11 gi|433592169|ref|YP_007281665.1| - 1.4 9.2 17.2 1.2 9.4 4.3 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Med21 PF11221.8 gi|433592169|ref|YP_007281665.1| - 2 8.7 16.7 3 8.1 4.8 2.1 2 0 0 2 2 2 0 Subunit 21 of Mediator complex DUF4140 PF13600.6 gi|433592169|ref|YP_007281665.1| - 2.5 8.6 18.1 8e+02 0.6 18.1 2.2 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) eIF3_subunit PF08597.10 gi|433592169|ref|YP_007281665.1| - 3 7.7 12.4 6.3 6.6 12.4 1.4 1 1 0 1 1 1 0 Translation initiation factor eIF3 subunit Spc7 PF08317.11 gi|433592169|ref|YP_007281665.1| - 3.1 6.6 18.9 1.6 7.6 6.3 2.0 1 1 0 2 2 2 0 Spc7 kinetochore protein Seryl_tRNA_N PF02403.22 gi|433592169|ref|YP_007281665.1| - 3.1 8.1 15.6 0.62 10.3 2.3 2.2 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Sigma70_ner PF04546.13 gi|433592169|ref|YP_007281665.1| - 3.1 7.6 15.6 0.2 11.5 2.2 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region Fib_alpha PF08702.10 gi|433592169|ref|YP_007281665.1| - 3.5 7.8 10.2 19 5.4 10.2 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.6 gi|433592169|ref|YP_007281665.1| - 3.7 8.0 11.8 8.4 6.9 1.8 2.2 2 0 0 2 2 2 0 Snapin/Pallidin DUF3552 PF12072.8 gi|433592169|ref|YP_007281665.1| - 3.8 6.9 20.3 51 3.2 20.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) DUF3450 PF11932.8 gi|433592169|ref|YP_007281665.1| - 4.3 6.6 19.8 1.4 8.2 5.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF4618 PF15397.6 gi|433592169|ref|YP_007281665.1| - 4.4 6.6 16.8 8.6 5.7 16.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) L_biotic_typeA PF04604.13 gi|433592169|ref|YP_007281665.1| - 8.7 6.3 6.2 1.9 8.4 0.5 2.6 2 1 1 3 3 3 0 Type-A lantibiotic DUF4407 PF14362.6 gi|433592169|ref|YP_007281665.1| - 8.8 5.6 10.4 18 4.6 10.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3194 PF11419.8 gi|433592170|ref|YP_007281666.1| - 0.00089 19.6 0.5 0.0012 19.1 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) LUD_dom PF02589.15 gi|433592172|ref|YP_007281668.1| - 4.3e-42 144.0 0.2 4.3e-42 144.0 0.2 1.7 2 0 0 2 2 2 1 LUD domain Fer4_8 PF13183.6 gi|433592172|ref|YP_007281668.1| - 1.7e-08 34.8 4.1 4.3e-08 33.5 4.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433592172|ref|YP_007281668.1| - 2e-08 34.2 3.5 0.00031 20.8 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433592172|ref|YP_007281668.1| - 6.6e-08 32.6 0.7 1.8e-07 31.2 0.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|433592172|ref|YP_007281668.1| - 1.5e-07 31.9 2.6 2.9e-07 30.9 2.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|433592172|ref|YP_007281668.1| - 1.2e-06 28.9 6.4 2.9e-06 27.8 6.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|433592172|ref|YP_007281668.1| - 3.4e-05 23.5 14.9 0.00051 19.7 3.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|433592172|ref|YP_007281668.1| - 4e-05 23.6 7.3 0.00022 21.3 7.3 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|433592172|ref|YP_007281668.1| - 0.00022 22.1 3.1 0.021 15.8 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|433592172|ref|YP_007281668.1| - 0.00032 20.8 1.7 0.025 14.8 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|433592172|ref|YP_007281668.1| - 0.00074 19.5 12.8 0.0021 18.0 3.1 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|433592172|ref|YP_007281668.1| - 0.0015 18.5 15.0 0.027 14.5 4.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain CCG PF02754.16 gi|433592172|ref|YP_007281668.1| - 0.0052 17.0 0.4 0.015 15.5 0.4 1.9 1 0 0 1 1 1 1 Cysteine-rich domain Fer4_4 PF12800.7 gi|433592172|ref|YP_007281668.1| - 0.0076 16.7 12.8 0.088 13.4 2.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|433592172|ref|YP_007281668.1| - 0.011 15.5 0.2 0.011 15.5 0.2 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|433592172|ref|YP_007281668.1| - 0.096 13.7 17.3 0.094 13.7 5.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|433592172|ref|YP_007281668.1| - 0.34 11.8 7.3 1.5 9.7 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain LUD_dom PF02589.15 gi|433592173|ref|YP_007281669.1| - 3.4e-14 53.0 0.1 1.4e-13 51.0 0.0 1.7 1 1 1 2 2 2 1 LUD domain GATase PF00117.28 gi|433592174|ref|YP_007281670.1| - 1.2e-36 126.3 0.0 1.3e-36 126.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|433592174|ref|YP_007281670.1| - 4.2e-14 52.8 2.4 1.5e-12 47.7 0.4 2.9 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|433592174|ref|YP_007281670.1| - 0.06 12.9 0.1 0.14 11.8 0.1 1.7 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Zn_Tnp_IS1595 PF12760.7 gi|433592175|ref|YP_007281671.1| - 0.017 15.1 1.6 0.038 14.0 1.6 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 gi|433592175|ref|YP_007281671.1| - 0.077 12.9 2.6 0.15 12.0 1.8 1.9 1 1 1 2 2 2 0 Nudix N-terminal BAMBI PF06211.12 gi|433592175|ref|YP_007281671.1| - 0.1 12.8 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 BMP and activin membrane-bound inhibitor (BAMBI) N-terminal domain ThrE PF06738.12 gi|433592177|ref|YP_007281673.1| - 0.035 13.5 6.9 0.048 13.0 6.9 1.1 1 0 0 1 1 1 0 Putative threonine/serine exporter IncE PF17627.2 gi|433592177|ref|YP_007281673.1| - 0.43 10.6 4.9 0.71 9.9 4.8 1.4 1 1 0 1 1 1 0 Inclusion membrane protein E Cyt_c_ox_IV PF12270.8 gi|433592177|ref|YP_007281673.1| - 6 7.0 7.6 0.75 9.9 2.3 2.0 2 1 1 3 3 3 0 Cytochrome c oxidase subunit IV DUF4293 PF14126.6 gi|433592178|ref|YP_007281674.1| - 0.029 14.6 0.1 0.034 14.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) PGF-CTERM PF18204.1 gi|433592178|ref|YP_007281674.1| - 0.034 14.1 2.0 0.034 14.1 2.0 1.7 2 0 0 2 2 2 0 PGF-CTERM motif LMBR1 PF04791.16 gi|433592178|ref|YP_007281674.1| - 0.079 11.9 0.1 0.081 11.8 0.1 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein CTV_P6 PF06706.11 gi|433592179|ref|YP_007281675.1| - 0.086 12.6 2.7 0.11 12.2 2.7 1.1 1 0 0 1 1 1 0 Citrus tristeza virus 6-kDa protein NAD_binding_10 PF13460.6 gi|433592180|ref|YP_007281676.1| - 4.3e-40 137.6 0.1 5.1e-40 137.3 0.1 1.1 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|433592180|ref|YP_007281676.1| - 5.8e-09 35.9 0.0 1.1e-08 34.9 0.0 1.4 1 1 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.19 gi|433592180|ref|YP_007281676.1| - 0.0023 17.0 0.1 0.0031 16.6 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 gi|433592180|ref|YP_007281676.1| - 0.0038 16.7 0.1 0.0057 16.1 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Semialdhyde_dh PF01118.24 gi|433592180|ref|YP_007281676.1| - 0.03 14.8 0.1 0.062 13.7 0.1 1.6 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain PASTA PF03793.19 gi|433592180|ref|YP_007281676.1| - 0.043 13.7 0.0 0.09 12.7 0.0 1.6 1 0 0 1 1 1 0 PASTA domain RmlD_sub_bind PF04321.17 gi|433592180|ref|YP_007281676.1| - 0.086 11.9 0.1 0.15 11.1 0.0 1.4 2 0 0 2 2 2 0 RmlD substrate binding domain Lactamase_B PF00753.27 gi|433592181|ref|YP_007281677.1| - 6.2e-29 101.4 7.5 6.2e-29 101.4 7.5 1.5 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433592181|ref|YP_007281677.1| - 0.0038 16.7 6.5 0.0041 16.7 2.3 2.6 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|433592181|ref|YP_007281677.1| - 0.037 13.9 0.3 0.092 12.6 0.0 1.9 2 1 0 2 2 2 0 Beta-lactamase superfamily domain Peripla_BP_6 PF13458.6 gi|433592182|ref|YP_007281678.1| - 8.1e-41 140.8 1.0 1.1e-40 140.4 1.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|433592182|ref|YP_007281678.1| - 2.4e-16 59.8 0.0 3e-15 56.2 0.0 2.0 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|433592182|ref|YP_007281678.1| - 5.9e-13 48.5 0.1 2.6e-07 29.9 0.1 2.9 2 1 0 2 2 2 2 Periplasmic binding protein domain Bmp PF02608.14 gi|433592182|ref|YP_007281678.1| - 0.00077 18.5 0.1 0.14 11.1 0.0 2.2 2 0 0 2 2 2 2 ABC transporter substrate-binding protein PnrA-like TAT_signal PF10518.9 gi|433592182|ref|YP_007281678.1| - 0.0086 15.9 9.1 0.014 15.2 9.1 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.16 gi|433592183|ref|YP_007281679.1| - 1.4e-37 129.4 41.4 1.7e-37 129.0 41.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component IRK PF01007.20 gi|433592183|ref|YP_007281679.1| - 0.074 12.9 0.0 0.34 10.7 0.0 2.1 1 0 0 1 1 1 0 Inward rectifier potassium channel transmembrane domain BPD_transp_2 PF02653.16 gi|433592184|ref|YP_007281680.1| - 1.5e-37 129.2 29.8 2.1e-37 128.8 29.8 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BC10 PF06726.12 gi|433592184|ref|YP_007281680.1| - 0.71 10.2 3.9 1.2 9.4 0.0 3.0 4 0 0 4 4 4 0 Bladder cancer-related protein BC10 ABC_tran PF00005.27 gi|433592185|ref|YP_007281681.1| - 2.8e-27 95.9 0.0 4.2e-27 95.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|433592185|ref|YP_007281681.1| - 9.5e-09 35.0 0.5 1.8e-08 34.1 0.5 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|433592185|ref|YP_007281681.1| - 2.3e-06 27.6 0.2 4.1e-05 23.5 0.1 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|433592185|ref|YP_007281681.1| - 2e-05 25.2 1.1 2.8e-05 24.7 0.5 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|433592185|ref|YP_007281681.1| - 0.00053 19.7 0.1 0.0011 18.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|433592185|ref|YP_007281681.1| - 0.00059 19.3 0.5 0.0044 16.5 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Gln-synt_C-ter PF18318.1 gi|433592185|ref|YP_007281681.1| - 0.018 14.9 0.0 0.031 14.1 0.0 1.3 1 0 0 1 1 1 0 Glutamine synthetase C-terminal domain MMR_HSR1 PF01926.23 gi|433592185|ref|YP_007281681.1| - 0.038 14.1 0.3 0.079 13.0 0.3 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 gi|433592185|ref|YP_007281681.1| - 0.041 12.7 0.9 0.095 11.5 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.29 gi|433592185|ref|YP_007281681.1| - 0.066 13.6 0.1 0.19 12.2 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|433592185|ref|YP_007281681.1| - 0.094 12.6 0.1 0.31 10.9 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 gi|433592185|ref|YP_007281681.1| - 0.1 13.0 0.1 0.22 11.9 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_15 PF13175.6 gi|433592185|ref|YP_007281681.1| - 0.17 11.6 0.3 0.31 10.7 0.2 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|433592185|ref|YP_007281681.1| - 0.23 11.0 0.4 13 5.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|433592186|ref|YP_007281682.1| - 2.5e-28 99.3 0.0 3.6e-28 98.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433592186|ref|YP_007281682.1| - 6.1e-10 39.4 0.9 0.00023 21.1 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|433592186|ref|YP_007281682.1| - 0.00066 19.4 0.1 0.0014 18.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|433592186|ref|YP_007281682.1| - 0.00075 20.1 0.1 0.0014 19.2 0.0 1.5 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|433592186|ref|YP_007281682.1| - 0.00076 19.0 0.9 0.0071 15.8 0.9 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|433592186|ref|YP_007281682.1| - 0.0098 15.5 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|433592186|ref|YP_007281682.1| - 0.011 16.0 0.0 0.037 14.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|433592186|ref|YP_007281682.1| - 0.016 15.0 0.1 0.034 13.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|433592186|ref|YP_007281682.1| - 0.027 14.2 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_16 PF13191.6 gi|433592186|ref|YP_007281682.1| - 0.055 13.8 0.0 0.1 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|433592186|ref|YP_007281682.1| - 0.06 12.4 0.5 0.11 11.5 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA PF00004.29 gi|433592186|ref|YP_007281682.1| - 0.063 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|433592186|ref|YP_007281682.1| - 0.081 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ATP_bind_1 PF03029.17 gi|433592186|ref|YP_007281682.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|433592186|ref|YP_007281682.1| - 0.17 12.4 0.0 0.33 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain 4HBT PF03061.22 gi|433592187|ref|YP_007281683.1| - 5.9e-10 39.4 0.1 8.9e-10 38.8 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|433592187|ref|YP_007281683.1| - 3.7e-08 33.9 0.1 4.4e-08 33.7 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily ExoD PF06055.12 gi|433592188|ref|YP_007281684.1| - 0.3 10.5 6.4 0.3 10.4 6.4 1.0 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD Kinocilin PF15033.6 gi|433592188|ref|YP_007281684.1| - 0.53 9.9 2.6 0.54 9.9 2.6 1.0 1 0 0 1 1 1 0 Kinocilin protein PGPGW PF09656.10 gi|433592188|ref|YP_007281684.1| - 5.4 6.6 16.2 25 4.5 16.2 1.8 1 1 0 1 1 1 0 Putative transmembrane protein (PGPGW) Amino_oxidase PF01593.24 gi|433592189|ref|YP_007281685.1| - 5.3e-47 161.1 0.7 1.4e-46 159.7 0.7 1.6 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|433592189|ref|YP_007281685.1| - 6.6e-15 55.1 1.8 8.7e-15 54.7 0.4 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|433592189|ref|YP_007281685.1| - 1.8e-11 44.2 9.8 5.6e-11 42.6 9.8 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|433592189|ref|YP_007281685.1| - 3e-08 33.2 2.7 4.8e-05 22.7 0.5 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|433592189|ref|YP_007281685.1| - 2.5e-07 29.7 0.2 0.00024 19.9 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.27 gi|433592189|ref|YP_007281685.1| - 1.5e-06 28.7 0.4 0.00049 20.6 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|433592189|ref|YP_007281685.1| - 6.1e-06 25.7 1.0 2.8e-05 23.5 0.6 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|433592189|ref|YP_007281685.1| - 0.00012 21.3 2.9 0.00012 21.3 2.9 2.1 1 1 1 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|433592189|ref|YP_007281685.1| - 0.0002 20.8 4.8 0.00041 19.8 3.8 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|433592189|ref|YP_007281685.1| - 0.00096 18.3 0.8 0.0015 17.7 0.8 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|433592189|ref|YP_007281685.1| - 0.00096 19.2 3.0 0.19 11.7 0.3 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|433592189|ref|YP_007281685.1| - 0.0013 18.1 0.1 0.0021 17.4 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|433592189|ref|YP_007281685.1| - 0.0029 16.9 0.1 0.0052 16.0 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|433592189|ref|YP_007281685.1| - 0.0061 15.9 0.1 1.9 7.7 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|433592189|ref|YP_007281685.1| - 0.022 13.6 0.7 0.032 13.1 0.7 1.2 1 0 0 1 1 1 0 Tryptophan halogenase ApbA PF02558.16 gi|433592189|ref|YP_007281685.1| - 0.12 12.0 0.2 0.36 10.5 0.2 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|433592189|ref|YP_007281685.1| - 0.16 10.9 2.3 0.5 9.3 0.3 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein PrgI PF12666.7 gi|433592190|ref|YP_007281686.1| - 0.033 14.9 1.5 0.04 14.6 1.5 1.1 1 0 0 1 1 1 0 PrgI family protein Herpes_UL49_5 PF05702.11 gi|433592190|ref|YP_007281686.1| - 0.27 11.4 3.9 0.31 11.2 3.4 1.4 1 1 0 1 1 1 0 Herpesvirus UL49.5 envelope/tegument protein Metallophos PF00149.28 gi|433592191|ref|YP_007281687.1| - 3.8e-07 30.8 0.0 8.5e-07 29.7 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|433592191|ref|YP_007281687.1| - 0.00078 19.7 0.1 0.0013 19.0 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Exosortase_EpsH PF09721.10 gi|433592192|ref|YP_007281688.1| - 9.4e-15 54.8 16.7 1.5e-14 54.2 16.7 1.3 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) HTH_24 PF13412.6 gi|433592193|ref|YP_007281689.1| - 2.2e-08 33.5 0.0 4.1e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433592193|ref|YP_007281689.1| - 4.7e-08 32.8 0.1 1.5e-07 31.2 0.1 1.9 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|433592193|ref|YP_007281689.1| - 7.5e-07 29.0 0.0 1.6e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|433592193|ref|YP_007281689.1| - 7.5e-05 22.6 0.0 0.00016 21.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|433592193|ref|YP_007281689.1| - 0.00033 21.1 0.1 0.0016 18.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|433592193|ref|YP_007281689.1| - 0.00082 19.3 0.0 0.0015 18.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix Mnd1 PF03962.15 gi|433592193|ref|YP_007281689.1| - 0.001 19.3 0.0 0.0017 18.6 0.0 1.3 1 0 0 1 1 1 1 Mnd1 HTH domain HTH_11 PF08279.12 gi|433592193|ref|YP_007281689.1| - 0.0022 17.9 0.0 0.0036 17.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|433592193|ref|YP_007281689.1| - 0.0062 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_13 PF11972.8 gi|433592193|ref|YP_007281689.1| - 0.015 15.4 0.2 0.035 14.2 0.0 1.7 2 0 0 2 2 1 0 HTH DNA binding domain HTH_20 PF12840.7 gi|433592193|ref|YP_007281689.1| - 0.016 15.2 0.0 0.044 13.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4364 PF14277.6 gi|433592193|ref|YP_007281689.1| - 0.027 14.2 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Rrf2 PF02082.20 gi|433592193|ref|YP_007281689.1| - 0.028 14.8 0.0 0.11 12.9 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator HTH_5 PF01022.20 gi|433592193|ref|YP_007281689.1| - 0.034 14.0 0.0 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|433592193|ref|YP_007281689.1| - 0.046 13.7 0.0 0.1 12.6 0.0 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain SMC_ScpB PF04079.16 gi|433592193|ref|YP_007281689.1| - 0.055 13.1 0.0 0.092 12.4 0.0 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB GntR PF00392.21 gi|433592193|ref|YP_007281689.1| - 0.11 12.2 0.2 0.23 11.2 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|433592193|ref|YP_007281689.1| - 0.12 12.3 0.1 0.24 11.3 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_1 PF00126.27 gi|433592193|ref|YP_007281689.1| - 0.13 12.2 0.0 0.38 10.7 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.19 gi|433592193|ref|YP_007281689.1| - 0.14 12.4 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain NMD3 PF04981.13 gi|433592193|ref|YP_007281689.1| - 0.2 11.1 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 NMD3 family PAC2 PF09754.9 gi|433592194|ref|YP_007281690.1| - 8e-53 179.6 0.2 9.6e-53 179.3 0.2 1.1 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.12 gi|433592195|ref|YP_007281691.1| - 3.1e-21 75.1 0.2 3.4e-21 75.0 0.2 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Zn-ribbon_8 PF09723.10 gi|433592195|ref|YP_007281691.1| - 0.055 13.6 0.1 0.082 13.0 0.1 1.3 1 0 0 1 1 1 0 Zinc ribbon domain EIF_2_alpha PF07541.12 gi|433592196|ref|YP_007281692.1| - 1.1e-23 83.6 0.0 1.8e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|433592196|ref|YP_007281692.1| - 4.6e-11 42.9 3.3 5.2e-11 42.7 1.3 2.0 2 0 0 2 2 2 1 S1 RNA binding domain DUF2073 PF09846.9 gi|433592196|ref|YP_007281692.1| - 0.057 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) cwf21 PF08312.12 gi|433592196|ref|YP_007281692.1| - 0.22 11.7 0.1 0.22 11.7 0.1 2.6 3 1 0 3 3 3 0 cwf21 domain Ribosomal_S27e PF01667.17 gi|433592197|ref|YP_007281693.1| - 1.1e-20 73.0 0.3 1.2e-20 73.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.10 gi|433592197|ref|YP_007281693.1| - 0.00015 21.8 1.0 0.00022 21.3 1.0 1.2 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|433592197|ref|YP_007281693.1| - 0.03 14.3 0.7 0.035 14.1 0.7 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|433592197|ref|YP_007281693.1| - 0.039 13.9 0.5 0.048 13.6 0.5 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|433592197|ref|YP_007281693.1| - 0.041 13.4 1.6 0.041 13.4 1.6 1.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C2H2_3 PF13878.6 gi|433592197|ref|YP_007281693.1| - 0.052 13.4 0.8 3.3 7.6 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO C1_1 PF00130.22 gi|433592197|ref|YP_007281693.1| - 0.065 13.1 0.5 0.095 12.6 0.5 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) eIF-5_eIF-2B PF01873.17 gi|433592197|ref|YP_007281693.1| - 0.095 12.6 1.7 0.11 12.3 1.7 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zf-LSD1 PF06943.12 gi|433592197|ref|YP_007281693.1| - 0.11 12.3 2.9 3.7 7.5 0.2 2.3 2 0 0 2 2 2 0 LSD1 zinc finger zinc_ribbon_4 PF13717.6 gi|433592197|ref|YP_007281693.1| - 0.13 12.2 3.1 6.3 6.8 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_6 PF14599.6 gi|433592197|ref|YP_007281693.1| - 0.15 12.0 1.9 0.3 11.1 1.9 1.6 1 1 0 1 1 1 0 Zinc-ribbon Ribosomal_L44 PF00935.19 gi|433592198|ref|YP_007281694.1| - 2.1e-26 92.2 1.9 2.5e-26 91.9 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|433592198|ref|YP_007281694.1| - 1.5e-05 24.2 0.6 0.019 14.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433592198|ref|YP_007281694.1| - 0.01 16.0 1.8 2.4 8.3 0.2 2.4 2 0 0 2 2 2 2 Zinc ribbon domain Terminase_GpA PF05876.12 gi|433592198|ref|YP_007281694.1| - 0.011 14.4 1.1 0.015 13.9 1.1 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) Zn_Tnp_IS1595 PF12760.7 gi|433592198|ref|YP_007281694.1| - 0.019 14.9 2.3 3.2 7.8 0.3 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|433592198|ref|YP_007281694.1| - 0.021 14.5 1.5 0.78 9.5 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 gi|433592198|ref|YP_007281694.1| - 0.029 14.3 6.1 0.64 10.0 0.6 2.4 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|433592198|ref|YP_007281694.1| - 0.065 13.0 4.1 2.3 8.1 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|433592198|ref|YP_007281694.1| - 0.11 12.8 2.8 0.99 9.7 0.2 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|433592198|ref|YP_007281694.1| - 0.24 11.4 2.1 12 5.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|433592198|ref|YP_007281694.1| - 0.26 11.3 3.9 0.88 9.6 3.9 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-Mss51 PF13824.6 gi|433592198|ref|YP_007281694.1| - 0.27 11.4 6.8 0.46 10.6 6.8 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|433592198|ref|YP_007281694.1| - 0.86 9.4 7.0 0.68 9.7 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain GtrA PF04138.14 gi|433592200|ref|YP_007281696.1| - 1.4e-21 76.9 9.4 1.7e-21 76.6 9.4 1.0 1 0 0 1 1 1 1 GtrA-like protein ADC PF06314.11 gi|433592201|ref|YP_007281697.1| - 6.8e-21 74.9 0.1 7.8e-21 74.7 0.1 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) DUF2071 PF09844.9 gi|433592201|ref|YP_007281697.1| - 0.11 12.1 0.0 0.47 10.0 0.0 1.9 2 1 0 2 2 2 0 Uncharacterized conserved protein (COG2071) Abhydrolase_6 PF12697.7 gi|433592202|ref|YP_007281698.1| - 5.8e-15 56.5 3.5 1.4e-14 55.3 3.5 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|433592202|ref|YP_007281698.1| - 2.4e-14 53.6 0.0 6.3e-14 52.2 0.0 1.5 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|433592202|ref|YP_007281698.1| - 5.8e-08 32.3 0.0 6.3e-07 28.9 0.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|433592202|ref|YP_007281698.1| - 5.3e-05 23.0 0.0 0.00019 21.2 0.0 2.0 2 1 0 2 2 2 1 Putative esterase Ndr PF03096.14 gi|433592202|ref|YP_007281698.1| - 0.0032 16.2 0.0 0.02 13.6 0.0 2.0 2 0 0 2 2 2 1 Ndr family ABC_tran PF00005.27 gi|433592205|ref|YP_007281701.1| - 4.4e-33 114.7 0.0 7e-33 114.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|433592205|ref|YP_007281701.1| - 8.7e-15 55.0 0.3 1.7e-14 54.1 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|433592205|ref|YP_007281701.1| - 2e-06 27.8 0.0 0.0078 16.1 0.1 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|433592205|ref|YP_007281701.1| - 3.6e-05 24.0 0.3 0.00018 21.8 0.1 2.2 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|433592205|ref|YP_007281701.1| - 0.00021 20.8 0.0 0.00051 19.6 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|433592205|ref|YP_007281701.1| - 0.011 16.1 1.9 0.016 15.6 0.3 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|433592205|ref|YP_007281701.1| - 0.023 15.1 0.0 0.25 11.8 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|433592205|ref|YP_007281701.1| - 0.027 14.5 1.0 0.89 9.6 0.1 3.0 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|433592205|ref|YP_007281701.1| - 0.037 13.6 1.0 1 8.9 1.0 2.5 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|433592205|ref|YP_007281701.1| - 0.046 13.4 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|433592205|ref|YP_007281701.1| - 0.072 13.0 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|433592205|ref|YP_007281701.1| - 0.1 11.2 0.5 3.1 6.3 0.1 2.4 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|433592205|ref|YP_007281701.1| - 0.1 12.7 0.3 0.6 10.3 0.1 2.3 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|433592205|ref|YP_007281701.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 gi|433592205|ref|YP_007281701.1| - 0.16 11.8 0.2 0.34 10.7 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|433592205|ref|YP_007281701.1| - 0.21 11.8 1.0 1.6 9.1 0.1 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit PduV-EutP PF10662.9 gi|433592205|ref|YP_007281701.1| - 0.4 10.4 0.7 1 9.1 0.3 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 gi|433592206|ref|YP_007281702.1| - 7.2e-27 94.6 0.0 1.7e-15 57.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|433592206|ref|YP_007281702.1| - 3.8e-19 69.0 0.1 7.5e-19 68.0 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|433592206|ref|YP_007281702.1| - 1e-05 25.5 0.0 9e-05 22.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|433592206|ref|YP_007281702.1| - 0.0017 18.7 0.1 0.46 10.8 0.0 2.9 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|433592206|ref|YP_007281702.1| - 0.0021 17.6 0.1 0.44 9.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|433592206|ref|YP_007281702.1| - 0.028 14.2 0.1 0.057 13.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|433592206|ref|YP_007281702.1| - 0.03 14.7 0.1 0.083 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain ATP-synt_ab PF00006.25 gi|433592206|ref|YP_007281702.1| - 0.067 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.17 gi|433592206|ref|YP_007281702.1| - 0.093 12.8 0.1 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain Sigma54_activat PF00158.26 gi|433592206|ref|YP_007281702.1| - 0.14 11.8 0.1 0.44 10.2 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|433592206|ref|YP_007281702.1| - 0.15 11.6 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region BPD_transp_1 PF00528.22 gi|433592207|ref|YP_007281703.1| - 2.3e-20 73.1 8.3 2.3e-20 73.1 8.3 3.4 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|433592207|ref|YP_007281703.1| - 7.3e-05 22.7 2.0 0.00053 19.9 0.0 3.5 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C NADHdh_A3 PF14987.6 gi|433592207|ref|YP_007281703.1| - 0.1 12.9 0.1 0.34 11.2 0.0 1.9 2 0 0 2 2 2 0 NADH dehydrogenase 1 alpha subcomplex subunit 3 BPD_transp_1 PF00528.22 gi|433592208|ref|YP_007281704.1| - 1.4e-36 126.0 11.2 1.4e-36 126.0 11.2 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|433592209|ref|YP_007281705.1| - 4.3e-68 230.0 3.1 6.4e-68 229.4 3.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Pribosyltran PF00156.27 gi|433592210|ref|YP_007281706.1| - 3.6e-17 62.3 3.2 4.6e-17 62.0 3.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|433592210|ref|YP_007281706.1| - 0.00064 19.2 0.1 0.001 18.5 0.1 1.3 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase Reticulon PF02453.17 gi|433592211|ref|YP_007281707.1| - 0.011 15.7 0.1 0.016 15.2 0.1 1.2 1 0 0 1 1 1 0 Reticulon DFP PF04127.15 gi|433592212|ref|YP_007281708.1| - 9e-51 172.3 2.0 1.6e-49 168.3 0.6 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|433592212|ref|YP_007281708.1| - 5.8e-35 120.4 0.2 8.5e-35 119.8 0.2 1.3 1 0 0 1 1 1 1 Flavoprotein DDE_Tnp_1 PF01609.21 gi|433592213|ref|YP_007281709.1| - 4.8e-21 75.4 0.0 7.1e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain Bactofilin PF04519.13 gi|433592214|ref|YP_007281710.1| - 1.9e-12 47.3 15.8 1.1e-05 25.6 8.7 2.8 2 1 0 2 2 2 2 Polymer-forming cytoskeletal Pilin_N PF07790.11 gi|433592214|ref|YP_007281710.1| - 5.3e-06 27.3 0.6 5.3e-06 27.3 0.6 2.5 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Pyr_redox_2 PF07992.14 gi|433592215|ref|YP_007281711.1| - 2.5e-12 46.6 2.7 3.5e-06 26.5 1.2 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|433592215|ref|YP_007281711.1| - 7.8e-08 31.8 5.4 9.8e-06 24.9 3.0 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|433592215|ref|YP_007281711.1| - 4.7e-05 23.1 12.0 0.02 14.5 4.2 2.6 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|433592215|ref|YP_007281711.1| - 0.0002 20.8 3.7 0.0002 20.8 3.7 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|433592215|ref|YP_007281711.1| - 0.00028 20.1 1.4 0.014 14.4 0.6 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|433592215|ref|YP_007281711.1| - 0.00033 20.0 0.9 0.00069 19.0 0.9 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|433592215|ref|YP_007281711.1| - 0.00035 20.7 1.1 0.00052 20.2 0.2 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|433592215|ref|YP_007281711.1| - 0.0004 19.8 0.1 0.012 14.9 0.2 2.3 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|433592215|ref|YP_007281711.1| - 0.00046 19.4 0.4 0.00071 18.8 0.4 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|433592215|ref|YP_007281711.1| - 0.00074 18.3 0.1 0.0054 15.5 0.6 1.8 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|433592215|ref|YP_007281711.1| - 0.042 13.1 0.3 0.078 12.3 0.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|433592215|ref|YP_007281711.1| - 0.13 11.5 0.6 0.24 10.6 0.6 1.4 1 0 0 1 1 1 0 Thi4 family Peptidase_M48 PF01435.18 gi|433592216|ref|YP_007281712.1| - 2.4e-21 76.4 0.0 4.1e-21 75.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M43 PF05572.13 gi|433592216|ref|YP_007281712.1| - 0.18 11.7 0.0 0.29 11.0 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Polyketide_cyc2 PF10604.9 gi|433592217|ref|YP_007281713.1| - 1.9e-10 41.2 1.2 2.6e-10 40.7 1.2 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|433592217|ref|YP_007281713.1| - 8.3e-06 26.0 0.5 1.3e-05 25.4 0.5 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport GHL13 PF14883.6 gi|433592217|ref|YP_007281713.1| - 0.031 13.3 0.0 0.037 13.1 0.0 1.1 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 13 TrkA_N PF02254.18 gi|433592218|ref|YP_007281714.1| - 1.8e-45 153.9 11.2 2.9e-25 88.8 2.2 2.7 3 0 0 3 3 2 2 TrkA-N domain TrkA_C PF02080.21 gi|433592218|ref|YP_007281714.1| - 1.4e-22 79.3 6.0 1.1e-11 44.4 0.1 3.3 3 0 0 3 3 3 2 TrkA-C domain Shikimate_DH PF01488.20 gi|433592218|ref|YP_007281714.1| - 8.8e-12 45.3 0.5 5.3e-05 23.3 0.1 3.0 2 1 1 3 3 3 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|433592218|ref|YP_007281714.1| - 3.3e-11 43.6 5.0 3.9e-06 27.2 1.4 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|433592218|ref|YP_007281714.1| - 6.2e-07 29.9 3.0 0.011 16.3 0.3 4.0 3 1 1 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|433592218|ref|YP_007281714.1| - 1.7e-06 28.1 9.1 0.0052 16.7 1.3 3.1 3 0 0 3 3 3 2 NAD(P)H-binding AlaDh_PNT_C PF01262.21 gi|433592218|ref|YP_007281714.1| - 1.8e-06 27.4 3.1 0.016 14.5 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|433592218|ref|YP_007281714.1| - 6.3e-06 25.7 0.5 0.027 13.7 0.0 2.4 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|433592218|ref|YP_007281714.1| - 2.5e-05 23.7 5.6 0.00019 20.8 0.5 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|433592218|ref|YP_007281714.1| - 5.7e-05 23.4 3.6 0.0046 17.2 1.4 2.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|433592218|ref|YP_007281714.1| - 8.3e-05 22.5 0.1 0.049 13.5 0.1 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.25 gi|433592218|ref|YP_007281714.1| - 0.00063 19.3 1.1 0.16 11.4 0.0 2.5 2 0 0 2 2 2 2 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|433592218|ref|YP_007281714.1| - 0.00066 19.3 0.6 0.0024 17.5 0.6 2.0 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|433592218|ref|YP_007281714.1| - 0.0014 18.3 0.1 0.0039 16.8 0.1 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA HEM4 PF02602.15 gi|433592218|ref|YP_007281714.1| - 0.0026 17.2 0.2 0.0046 16.3 0.2 1.4 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD NAD_binding_2 PF03446.15 gi|433592218|ref|YP_007281714.1| - 0.0036 17.5 0.1 0.043 14.0 0.1 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|433592218|ref|YP_007281714.1| - 0.0046 17.8 0.9 0.89 10.4 0.3 3.2 3 1 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold Epimerase PF01370.21 gi|433592218|ref|YP_007281714.1| - 0.0089 15.5 1.5 0.053 13.0 0.4 2.4 3 0 0 3 3 3 1 NAD dependent epimerase/dehydratase family Pyr_redox PF00070.27 gi|433592218|ref|YP_007281714.1| - 0.012 16.1 3.5 2 9.0 0.1 3.3 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|433592218|ref|YP_007281714.1| - 0.027 13.8 0.0 4.2 6.7 0.0 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|433592218|ref|YP_007281714.1| - 0.047 13.7 0.0 0.93 9.5 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Se-cys_synth_N PF12390.8 gi|433592218|ref|YP_007281714.1| - 0.084 13.1 0.2 16 5.8 0.0 2.9 2 0 0 2 2 2 0 Selenocysteine synthase N terminal DAO PF01266.24 gi|433592218|ref|YP_007281714.1| - 0.11 12.1 3.4 0.21 11.1 0.2 2.6 2 1 1 3 3 3 0 FAD dependent oxidoreductase YflT PF11181.8 gi|433592218|ref|YP_007281714.1| - 0.17 12.4 2.4 5.8 7.5 0.0 3.1 3 0 0 3 3 3 0 Heat induced stress protein YflT Pyr_redox_3 PF13738.6 gi|433592218|ref|YP_007281714.1| - 0.24 10.6 0.8 7.7 5.7 0.4 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GETHR PF05671.11 gi|433592218|ref|YP_007281714.1| - 0.5 9.8 2.2 8.3 5.9 0.1 3.0 3 0 0 3 3 3 0 GETHR pentapeptide repeat (5 copies) Rossmann-like PF10727.9 gi|433592218|ref|YP_007281714.1| - 3.6 7.5 6.6 0.93 9.4 0.5 2.8 3 1 0 3 3 2 0 Rossmann-like domain NAD_binding_8 PF13450.6 gi|433592219|ref|YP_007281715.1| - 2.7e-13 49.9 0.2 5.4e-13 49.0 0.2 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|433592219|ref|YP_007281715.1| - 1.3e-12 47.8 2.5 1.4e-05 24.6 0.1 2.1 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase Pyr_redox_2 PF07992.14 gi|433592219|ref|YP_007281715.1| - 0.2 10.8 0.5 2.8 7.1 0.2 2.3 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase PDH PF02153.17 gi|433592220|ref|YP_007281716.1| - 3e-11 42.8 0.5 1.9e-09 36.9 0.5 2.1 1 1 0 1 1 1 1 Prephenate dehydrogenase GFO_IDH_MocA PF01408.22 gi|433592220|ref|YP_007281716.1| - 0.019 15.8 2.0 0.033 15.0 0.3 2.2 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Apolipoprotein PF01442.18 gi|433592220|ref|YP_007281716.1| - 0.031 14.2 2.0 0.036 13.9 0.7 1.8 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain F420_oxidored PF03807.17 gi|433592220|ref|YP_007281716.1| - 2.1 9.0 5.7 1.3 9.7 0.8 2.7 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Methyltransf_23 PF13489.6 gi|433592221|ref|YP_007281717.1| - 1.1e-09 38.3 0.0 2.5e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433592221|ref|YP_007281717.1| - 7.6e-09 36.2 0.0 1.6e-08 35.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433592221|ref|YP_007281717.1| - 0.00021 21.9 0.0 0.0012 19.5 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 gi|433592221|ref|YP_007281717.1| - 0.00048 19.5 0.0 0.00077 18.8 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.6 gi|433592221|ref|YP_007281717.1| - 0.0048 16.7 0.0 0.11 12.3 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433592221|ref|YP_007281717.1| - 0.036 14.8 0.1 0.22 12.2 0.1 2.2 1 1 0 1 1 1 0 Methyltransferase domain SurE PF01975.17 gi|433592222|ref|YP_007281718.1| - 3.1e-48 164.1 0.1 3.8e-48 163.8 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE EAP30 PF04157.16 gi|433592223|ref|YP_007281719.1| - 0.087 12.1 0.0 0.097 11.9 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family CarboxypepD_reg PF13620.6 gi|433592226|ref|YP_007281722.1| - 2e-19 69.6 12.8 3.6e-10 40.0 1.5 2.6 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|433592226|ref|YP_007281722.1| - 9.6e-10 38.3 4.2 0.00024 21.1 0.5 2.5 2 0 0 2 2 2 2 CarboxypepD_reg-like domain PEGA PF08308.11 gi|433592226|ref|YP_007281722.1| - 1.7e-08 34.2 0.3 0.003 17.4 0.1 2.5 2 0 0 2 2 2 2 PEGA domain SWM_repeat PF13753.6 gi|433592226|ref|YP_007281722.1| - 0.00032 20.8 1.4 0.18 12.0 0.1 2.7 2 1 0 2 2 2 2 Putative flagellar system-associated repeat fn3_3 PF14686.6 gi|433592226|ref|YP_007281722.1| - 0.001 18.8 0.4 0.021 14.6 0.0 2.5 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II MG4 PF17789.1 gi|433592226|ref|YP_007281722.1| - 0.0023 18.0 0.9 0.75 10.0 0.1 2.7 2 1 0 2 2 2 2 Macroglobulin domain MG4 Big_1 PF02369.16 gi|433592226|ref|YP_007281722.1| - 0.0081 16.1 1.7 0.0081 16.1 1.7 4.3 4 2 0 4 4 4 2 Bacterial Ig-like domain (group 1) DUF1533 PF07550.11 gi|433592226|ref|YP_007281722.1| - 0.0086 15.9 0.0 3.5 7.6 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1533) Y_Y_Y PF07495.13 gi|433592226|ref|YP_007281722.1| - 0.018 15.0 0.0 0.53 10.3 0.0 3.0 3 0 0 3 3 3 0 Y_Y_Y domain YtkA PF13115.6 gi|433592226|ref|YP_007281722.1| - 0.027 15.1 3.7 0.96 10.1 0.1 3.0 2 1 0 2 2 2 0 YtkA-like EMP24_GP25L PF01105.24 gi|433592226|ref|YP_007281722.1| - 0.18 11.7 3.6 0.49 10.3 0.0 2.5 2 1 1 3 3 3 0 emp24/gp25L/p24 family/GOLD SIS PF01380.22 gi|433592227|ref|YP_007281723.1| - 1.2e-45 154.6 0.3 3.3e-23 82.0 0.3 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|433592227|ref|YP_007281723.1| - 1.1e-21 77.4 2.6 1.4e-21 77.1 0.1 2.3 2 1 1 3 3 3 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|433592227|ref|YP_007281723.1| - 2.2e-18 66.3 0.0 4.2e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|433592227|ref|YP_007281723.1| - 0.01 14.8 0.0 0.018 14.0 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|433592227|ref|YP_007281723.1| - 0.049 13.6 0.5 0.45 10.5 0.0 2.7 3 0 0 3 3 3 0 SIS domain MarR_2 PF12802.7 gi|433592228|ref|YP_007281724.1| - 4.7e-07 29.6 0.1 1.1e-06 28.4 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|433592228|ref|YP_007281724.1| - 5.9e-06 25.7 0.1 1.2e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|433592228|ref|YP_007281724.1| - 4.5e-05 23.2 0.0 9.5e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433592228|ref|YP_007281724.1| - 0.00056 19.8 0.2 0.001 19.0 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|433592228|ref|YP_007281724.1| - 0.0073 16.1 0.2 0.015 15.1 0.2 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|433592228|ref|YP_007281724.1| - 0.051 13.4 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_31 PF13560.6 gi|433592228|ref|YP_007281724.1| - 0.083 13.2 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|433592228|ref|YP_007281724.1| - 0.087 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|433592228|ref|YP_007281724.1| - 0.22 11.5 0.9 0.44 10.5 0.1 1.8 2 0 0 2 2 2 0 MarR family UDPG_MGDP_dh_N PF03721.14 gi|433592229|ref|YP_007281725.1| - 1.7e-35 122.3 0.1 4.6e-35 120.9 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|433592229|ref|YP_007281725.1| - 3.8e-23 81.5 0.0 8.5e-23 80.4 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|433592229|ref|YP_007281725.1| - 1.6e-19 70.3 0.1 9.1e-19 67.8 0.0 2.3 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|433592229|ref|YP_007281725.1| - 2.8e-06 27.6 0.0 1.2e-05 25.5 0.0 2.1 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|433592229|ref|YP_007281725.1| - 9.1e-05 22.5 0.0 0.017 15.1 0.0 3.0 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|433592229|ref|YP_007281725.1| - 0.00015 21.2 0.1 0.045 13.1 0.0 2.9 2 2 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|433592229|ref|YP_007281725.1| - 0.00036 20.5 0.1 0.0027 17.6 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|433592229|ref|YP_007281725.1| - 0.00058 20.4 0.3 1.1 9.9 0.0 3.7 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|433592229|ref|YP_007281725.1| - 0.012 15.2 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PDH PF02153.17 gi|433592229|ref|YP_007281725.1| - 0.067 12.2 0.0 1.3 7.9 0.0 2.2 2 0 0 2 2 2 0 Prephenate dehydrogenase TrkA_N PF02254.18 gi|433592229|ref|YP_007281725.1| - 0.09 13.0 0.4 2.3 8.5 0.1 2.8 2 0 0 2 2 2 0 TrkA-N domain DUF354 PF04007.12 gi|433592230|ref|YP_007281726.1| - 1.4e-15 57.2 0.0 1.8e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|433592230|ref|YP_007281726.1| - 0.00011 22.3 0.1 0.00017 21.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|433592230|ref|YP_007281726.1| - 0.00026 21.1 1.1 0.00026 21.1 1.1 2.3 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433592230|ref|YP_007281726.1| - 0.00089 19.7 2.0 0.00089 19.7 2.0 2.9 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_tran_28_C PF04101.16 gi|433592230|ref|YP_007281726.1| - 0.0052 16.8 0.0 0.0095 15.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_transf_28 PF03033.20 gi|433592230|ref|YP_007281726.1| - 0.02 14.9 0.5 0.036 14.1 0.1 1.6 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain B12-binding PF02310.19 gi|433592230|ref|YP_007281726.1| - 0.022 14.8 2.9 0.36 10.9 0.4 2.5 2 0 0 2 2 2 0 B12 binding domain Glyco_trans_4_4 PF13579.6 gi|433592231|ref|YP_007281727.1| - 1.6e-12 48.2 3.0 1.6e-12 48.2 3.0 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|433592231|ref|YP_007281727.1| - 3.4e-12 46.2 0.0 5.8e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433592231|ref|YP_007281727.1| - 1.4e-10 41.8 0.2 5.2e-10 39.9 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|433592231|ref|YP_007281727.1| - 1.7e-10 41.1 1.3 1.8e-09 37.8 0.1 2.5 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|433592231|ref|YP_007281727.1| - 0.0057 16.7 0.0 0.028 14.4 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase 4-like PMT_2 PF13231.6 gi|433592232|ref|YP_007281728.1| - 2.2e-06 28.0 18.7 2.2e-06 28.0 18.7 4.6 3 1 1 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase YdjM PF04307.14 gi|433592233|ref|YP_007281729.1| - 2.4e-10 40.0 7.1 3.5e-10 39.4 7.1 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF1616 PF07760.11 gi|433592234|ref|YP_007281730.1| - 2.1e-85 286.7 0.6 2.3e-85 286.5 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) LPG_synthase_TM PF03706.13 gi|433592234|ref|YP_007281730.1| - 0.014 14.9 5.0 0.014 14.9 5.0 2.2 2 0 0 2 2 2 0 Lysylphosphatidylglycerol synthase TM region DUF4131 PF13567.6 gi|433592234|ref|YP_007281730.1| - 0.018 14.7 0.6 0.018 14.7 0.6 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF4395 PF14340.6 gi|433592234|ref|YP_007281730.1| - 0.07 13.5 0.3 0.07 13.5 0.3 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4395) HTH_20 PF12840.7 gi|433592235|ref|YP_007281731.1| - 0.022 14.8 0.0 1.7 8.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2139 PF09910.9 gi|433592236|ref|YP_007281732.1| - 0.097 11.8 0.1 0.13 11.4 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2139) Asn_synthase PF00733.21 gi|433592237|ref|YP_007281733.1| - 5e-06 26.4 0.1 1.2e-05 25.2 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase Polysacc_deac_1 PF01522.21 gi|433592238|ref|YP_007281734.1| - 1.2e-07 31.6 0.7 1.9e-07 31.0 0.1 1.6 2 0 0 2 2 2 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|433592238|ref|YP_007281734.1| - 0.0036 17.0 0.0 0.0054 16.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) UCR_Fe-S_N PF10399.9 gi|433592238|ref|YP_007281734.1| - 0.062 12.7 3.9 0.13 11.6 3.9 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|433592238|ref|YP_007281734.1| - 0.12 12.3 5.2 0.21 11.5 5.2 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AstE_AspA PF04952.14 gi|433592239|ref|YP_007281735.1| - 2.4e-14 53.1 0.0 4.4e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PKD PF00801.20 gi|433592239|ref|YP_007281735.1| - 7.4e-10 38.5 0.1 3.1e-09 36.5 0.1 2.0 1 0 0 1 1 1 1 PKD domain Peptidase_M99 PF17033.5 gi|433592239|ref|YP_007281735.1| - 0.00089 18.8 0.0 0.0022 17.5 0.0 1.5 2 0 0 2 2 2 1 Carboxypeptidase controlling helical cell shape catalytic REJ PF02010.15 gi|433592239|ref|YP_007281735.1| - 0.15 10.8 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 REJ domain Glycos_transf_2 PF00535.26 gi|433592240|ref|YP_007281736.1| - 2.7e-37 128.2 0.3 4.9e-37 127.3 0.3 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|433592240|ref|YP_007281736.1| - 6.8e-23 81.8 0.1 9.5e-23 81.3 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|433592240|ref|YP_007281736.1| - 1.8e-15 57.2 0.0 8.3e-15 55.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|433592240|ref|YP_007281736.1| - 3.8e-06 27.3 0.4 7.5e-06 26.4 0.4 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|433592240|ref|YP_007281736.1| - 0.0069 16.3 0.0 0.013 15.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|433592240|ref|YP_007281736.1| - 0.017 14.6 0.0 0.059 12.8 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase family 21 Polysacc_deac_1 PF01522.21 gi|433592241|ref|YP_007281737.1| - 0.097 12.6 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase Glycos_transf_2 PF00535.26 gi|433592242|ref|YP_007281738.1| - 8.2e-17 61.5 0.2 4.3e-14 52.7 0.2 2.2 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|433592242|ref|YP_007281738.1| - 0.02 15.4 0.1 0.032 14.7 0.1 1.5 1 1 0 1 1 1 0 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|433592242|ref|YP_007281738.1| - 0.071 13.0 0.1 0.2 11.5 0.0 1.7 1 1 0 1 1 1 0 Glycosyltransferase like family 2 Polysacc_synt_C PF14667.6 gi|433592243|ref|YP_007281739.1| - 1.8e-17 63.8 12.8 1.8e-17 63.8 12.8 5.1 4 1 1 6 6 6 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|433592243|ref|YP_007281739.1| - 1.1e-13 51.2 21.1 1.1e-13 51.2 21.1 2.5 2 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|433592243|ref|YP_007281739.1| - 1.2e-11 44.4 17.2 2.6e-11 43.3 17.2 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|433592243|ref|YP_007281739.1| - 5.9e-06 26.0 9.6 5.9e-06 26.0 9.6 3.5 4 0 0 4 4 4 1 MatE MurJ PF03023.14 gi|433592243|ref|YP_007281739.1| - 5.9e-05 21.9 27.5 5.9e-05 21.9 27.5 1.8 1 1 0 1 1 1 1 Lipid II flippase MurJ Beta_helix PF13229.6 gi|433592244|ref|YP_007281740.1| - 0.00024 21.0 4.0 0.074 12.9 0.0 3.4 1 1 1 2 2 2 2 Right handed beta helix region RskA PF10099.9 gi|433592244|ref|YP_007281740.1| - 0.085 13.1 0.2 0.17 12.2 0.2 1.4 1 0 0 1 1 1 0 Anti-sigma-K factor rskA zf-CCCH_2 PF14608.6 gi|433592244|ref|YP_007281740.1| - 0.23 12.0 0.3 0.44 11.1 0.3 1.5 1 0 0 1 1 1 0 RNA-binding, Nab2-type zinc finger HTH_10 PF04967.12 gi|433592245|ref|YP_007281741.1| - 5.4e-17 61.3 0.0 8.2e-17 60.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|433592245|ref|YP_007281741.1| - 7.9e-09 34.9 0.0 2e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|433592245|ref|YP_007281741.1| - 8.7e-06 25.5 0.1 2.4e-05 24.1 0.0 1.8 2 0 0 2 2 2 1 MarR family BAT PF15915.5 gi|433592245|ref|YP_007281741.1| - 1.2e-05 25.2 2.8 1.9e-05 24.6 2.8 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|433592245|ref|YP_007281741.1| - 1.5e-05 24.4 0.0 3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|433592245|ref|YP_007281741.1| - 1.9e-05 24.2 0.2 0.00017 21.1 0.2 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|433592245|ref|YP_007281741.1| - 0.0005 20.1 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|433592245|ref|YP_007281741.1| - 0.00082 19.2 0.3 0.0021 17.9 0.3 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|433592245|ref|YP_007281741.1| - 0.0022 17.9 0.0 0.0044 16.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|433592245|ref|YP_007281741.1| - 0.0034 17.3 0.0 0.013 15.5 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_31 PF13560.6 gi|433592245|ref|YP_007281741.1| - 0.0037 17.6 0.0 0.01 16.2 0.0 1.8 2 1 0 2 2 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|433592245|ref|YP_007281741.1| - 0.0093 16.1 0.0 0.032 14.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_50 PF18024.1 gi|433592245|ref|YP_007281741.1| - 0.012 15.2 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|433592245|ref|YP_007281741.1| - 0.013 15.7 0.0 0.026 14.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_4 PF13613.6 gi|433592245|ref|YP_007281741.1| - 0.017 14.9 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease MarR PF01047.22 gi|433592245|ref|YP_007281741.1| - 0.017 15.1 0.0 0.066 13.2 0.0 2.0 1 1 0 1 1 1 0 MarR family Phage_CI_repr PF07022.13 gi|433592245|ref|YP_007281741.1| - 0.021 14.9 0.1 0.069 13.3 0.0 1.8 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_23 PF13384.6 gi|433592245|ref|YP_007281741.1| - 0.024 14.4 0.0 0.081 12.7 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain YdaS_antitoxin PF15943.5 gi|433592245|ref|YP_007281741.1| - 0.031 14.1 0.1 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_5 PF01022.20 gi|433592245|ref|YP_007281741.1| - 0.052 13.4 0.0 0.14 12.0 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family P22_Cro PF14549.6 gi|433592245|ref|YP_007281741.1| - 0.069 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_20 PF12840.7 gi|433592245|ref|YP_007281741.1| - 0.08 13.0 0.0 0.48 10.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain KORA PF16509.5 gi|433592245|ref|YP_007281741.1| - 0.094 13.0 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor UPF0122 PF04297.14 gi|433592245|ref|YP_007281741.1| - 0.11 12.7 0.1 0.23 11.7 0.1 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_36 PF13730.6 gi|433592245|ref|YP_007281741.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|433592245|ref|YP_007281741.1| - 0.12 12.4 0.1 0.23 11.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family LacI PF00356.21 gi|433592245|ref|YP_007281741.1| - 0.15 11.8 0.1 0.32 10.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family Phosphodiest PF01663.22 gi|433592246|ref|YP_007281742.1| - 9.9e-36 124.1 0.0 3.4e-34 119.0 0.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|433592246|ref|YP_007281742.1| - 0.00069 19.1 0.0 4.4 6.6 0.0 3.4 4 0 0 4 4 4 2 Sulfatase Metalloenzyme PF01676.18 gi|433592246|ref|YP_007281742.1| - 0.0012 18.3 0.0 0.013 14.9 0.0 2.1 2 0 0 2 2 2 1 Metalloenzyme superfamily PGM_PMM_I PF02878.16 gi|433592247|ref|YP_007281743.1| - 2.2e-32 111.7 0.4 4.7e-32 110.6 0.1 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|433592247|ref|YP_007281743.1| - 3.2e-19 69.5 0.3 9e-19 68.0 0.1 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|433592247|ref|YP_007281743.1| - 4.9e-18 65.4 0.0 1e-17 64.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|433592247|ref|YP_007281743.1| - 3.6e-09 36.7 0.3 9.4e-09 35.3 0.3 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Cupin_2 PF07883.11 gi|433592249|ref|YP_007281745.1| - 3.1e-08 33.2 0.6 5.7e-08 32.4 0.2 1.7 2 0 0 2 2 2 1 Cupin domain ARD PF03079.14 gi|433592249|ref|YP_007281745.1| - 0.0044 17.2 0.2 0.014 15.6 0.0 1.8 1 1 1 2 2 2 1 ARD/ARD' family HNH PF01844.23 gi|433592250|ref|YP_007281746.1| - 5.9e-07 29.6 6.4 5.9e-07 29.6 6.4 4.3 6 0 0 6 6 6 1 HNH endonuclease DZR PF12773.7 gi|433592250|ref|YP_007281746.1| - 0.00024 21.1 26.9 0.021 14.8 5.0 4.7 3 1 0 3 3 3 2 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|433592250|ref|YP_007281746.1| - 0.0043 17.2 30.5 0.1 12.7 1.0 6.3 6 1 0 6 6 6 2 Zinc ribbon domain PknG_rubred PF16919.5 gi|433592250|ref|YP_007281746.1| - 0.017 15.3 3.9 0.017 15.3 3.9 3.8 3 1 1 4 4 4 0 Protein kinase G rubredoxin domain C1_1 PF00130.22 gi|433592250|ref|YP_007281746.1| - 0.017 15.0 0.3 0.017 15.0 0.3 5.7 3 2 2 5 5 5 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-MYND PF01753.18 gi|433592250|ref|YP_007281746.1| - 0.076 13.1 20.0 16 5.6 6.1 5.1 3 1 1 4 4 4 0 MYND finger TF_Zn_Ribbon PF08271.12 gi|433592250|ref|YP_007281746.1| - 0.43 10.1 25.0 5.3 6.6 2.1 5.2 4 1 1 5 5 5 0 TFIIB zinc-binding Aminotran_1_2 PF00155.21 gi|433592251|ref|YP_007281747.1| - 1.1e-64 218.9 0.0 1.2e-64 218.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|433592251|ref|YP_007281747.1| - 9.2e-06 24.4 0.1 1.4e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|433592251|ref|YP_007281747.1| - 4.2e-05 22.7 0.1 8.4e-05 21.7 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|433592251|ref|YP_007281747.1| - 0.00054 19.3 0.1 0.00087 18.6 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|433592251|ref|YP_007281747.1| - 0.00059 19.3 0.7 0.00096 18.5 0.7 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DMRL_synthase PF00885.19 gi|433592252|ref|YP_007281748.1| - 8.5e-31 106.7 1.2 1.1e-30 106.3 1.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Cadherin_4 PF17803.1 gi|433592252|ref|YP_007281748.1| - 0.28 11.9 5.7 0.64 10.7 5.7 1.7 1 1 0 1 1 1 0 Bacterial cadherin-like domain DUF4097 PF13349.6 gi|433592253|ref|YP_007281749.1| - 6.3e-11 42.1 16.1 2.4e-10 40.2 16.1 1.8 1 1 0 1 1 1 1 Putative adhesin T2SSN PF01203.19 gi|433592253|ref|YP_007281749.1| - 0.012 15.8 1.5 0.14 12.4 0.8 2.7 1 1 0 2 2 2 0 Type II secretion system (T2SS), protein N DUF4369 PF14289.6 gi|433592253|ref|YP_007281749.1| - 0.016 15.7 2.4 2.5 8.7 0.0 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4369) Crystall_2 PF09076.10 gi|433592253|ref|YP_007281749.1| - 0.13 12.2 1.6 1.1 9.2 0.1 2.7 2 0 0 2 2 2 0 Beta/Gamma crystallin ATP-grasp PF02222.22 gi|433592254|ref|YP_007281750.1| - 2.7e-52 176.8 0.0 4e-52 176.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|433592254|ref|YP_007281750.1| - 1.8e-20 72.4 0.0 4.4e-20 71.1 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|433592254|ref|YP_007281750.1| - 9.1e-08 31.9 0.0 4.5e-07 29.6 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|433592254|ref|YP_007281750.1| - 7.7e-07 29.3 0.0 1.1e-06 28.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.19 gi|433592254|ref|YP_007281750.1| - 1.7e-06 27.5 0.0 3.2e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|433592254|ref|YP_007281750.1| - 0.0005 20.0 0.0 0.0009 19.2 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CPSase_L_D2 PF02786.17 gi|433592254|ref|YP_007281750.1| - 0.0012 18.3 0.1 0.0019 17.7 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain XdhC_C PF13478.6 gi|433592254|ref|YP_007281750.1| - 0.0022 18.5 0.1 0.0047 17.4 0.1 1.6 1 0 0 1 1 1 1 XdhC Rossmann domain ATP-grasp_5 PF13549.6 gi|433592254|ref|YP_007281750.1| - 0.0041 16.6 0.0 0.011 15.2 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain Pyr_redox PF00070.27 gi|433592254|ref|YP_007281750.1| - 0.013 16.0 0.1 0.069 13.7 0.1 2.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|433592254|ref|YP_007281750.1| - 0.014 14.6 0.5 0.74 9.0 0.3 2.2 2 0 0 2 2 2 0 FAD binding domain NAD_binding_2 PF03446.15 gi|433592254|ref|YP_007281750.1| - 0.03 14.5 0.0 0.17 12.1 0.0 2.2 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase PALP PF00291.25 gi|433592254|ref|YP_007281750.1| - 0.06 12.7 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme NAD_binding_7 PF13241.6 gi|433592254|ref|YP_007281750.1| - 0.19 12.2 0.6 0.89 10.0 0.1 2.2 2 1 0 2 2 2 0 Putative NAD(P)-binding AIRC PF00731.20 gi|433592256|ref|YP_007281752.1| - 5e-48 162.4 0.0 7.4e-48 161.9 0.0 1.2 1 0 0 1 1 1 1 AIR carboxylase Apolipoprotein PF01442.18 gi|433592256|ref|YP_007281752.1| - 0.075 12.9 0.1 0.15 12.0 0.0 1.6 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain Oxidored_q4 PF00507.19 gi|433592257|ref|YP_007281753.1| - 2.9e-31 107.6 0.1 3.7e-31 107.2 0.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Oxidored_q6 PF01058.22 gi|433592258|ref|YP_007281754.1| - 8.5e-21 74.2 0.1 1.2e-20 73.7 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|433592259|ref|YP_007281755.1| - 6.4e-85 284.5 0.0 1.3e-83 280.3 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|433592259|ref|YP_007281755.1| - 2.8e-34 118.3 0.1 4.9e-34 117.6 0.1 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.21 gi|433592260|ref|YP_007281756.1| - 8.3e-96 320.8 15.5 1e-95 320.5 15.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|433592261|ref|YP_007281757.1| - 2.1e-12 46.3 9.6 1.4e-06 27.9 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|433592261|ref|YP_007281757.1| - 4.7e-12 46.3 10.4 7.5e-12 45.7 10.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|433592261|ref|YP_007281757.1| - 1e-10 42.4 3.4 1.3e-05 26.1 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|433592261|ref|YP_007281757.1| - 1.1e-09 38.2 8.8 1.7e-09 37.7 8.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433592261|ref|YP_007281757.1| - 1e-08 35.2 22.8 8.2e-07 29.1 12.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433592261|ref|YP_007281757.1| - 3.1e-07 30.4 20.2 4.8e-06 26.6 11.8 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|433592261|ref|YP_007281757.1| - 3.5e-06 27.1 8.2 0.00087 19.6 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|433592261|ref|YP_007281757.1| - 1.1e-05 25.8 12.2 0.0052 17.3 1.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|433592261|ref|YP_007281757.1| - 1.7e-05 24.6 13.7 0.0059 16.6 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|433592261|ref|YP_007281757.1| - 2.5e-05 24.6 10.7 0.0007 20.0 12.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|433592261|ref|YP_007281757.1| - 4.5e-05 23.3 12.0 0.0022 18.0 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|433592261|ref|YP_007281757.1| - 0.00023 21.9 14.6 0.0038 18.0 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|433592261|ref|YP_007281757.1| - 0.0024 18.0 9.6 0.1 12.8 1.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|433592261|ref|YP_007281757.1| - 0.049 14.2 11.4 0.41 11.2 1.1 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|433592261|ref|YP_007281757.1| - 0.13 12.4 8.3 0.55 10.4 8.3 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S TNFR_c6 PF00020.18 gi|433592261|ref|YP_007281757.1| - 0.43 11.0 7.6 5.9 7.4 1.4 2.5 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Fer4_22 PF17179.4 gi|433592261|ref|YP_007281757.1| - 2.3 9.1 11.6 5.7 7.8 2.5 2.3 1 1 1 3 3 3 0 4Fe-4S dicluster domain zf_PR_Knuckle PF18445.1 gi|433592261|ref|YP_007281757.1| - 5.9 6.8 7.2 23 4.9 1.3 2.6 2 0 0 2 2 2 0 PR zinc knuckle motif Oxidored_q3 PF00499.20 gi|433592262|ref|YP_007281758.1| - 6.7e-21 74.5 4.4 6.7e-21 74.5 4.4 1.3 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4401 PF14351.6 gi|433592262|ref|YP_007281758.1| - 0.0059 16.0 6.8 0.0067 15.8 6.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4401) DUF4040 PF13244.6 gi|433592262|ref|YP_007281758.1| - 0.027 14.6 13.2 0.04 14.1 13.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4040) Phage_holin_2_4 PF16082.5 gi|433592262|ref|YP_007281758.1| - 0.086 12.6 0.4 0.086 12.6 0.4 1.6 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like DUF2530 PF10745.9 gi|433592262|ref|YP_007281758.1| - 0.24 11.7 5.8 0.21 11.8 4.7 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) G3P_acyltransf PF02660.15 gi|433592262|ref|YP_007281758.1| - 0.59 10.2 8.2 0.67 10.0 8.2 1.1 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase DUF4191 PF13829.6 gi|433592262|ref|YP_007281758.1| - 1 8.6 5.0 1.4 8.2 5.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Oxidored_q2 PF00420.24 gi|433592264|ref|YP_007281760.1| - 4.7e-22 77.6 9.4 5.8e-22 77.3 9.4 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NicO PF03824.16 gi|433592264|ref|YP_007281760.1| - 0.013 14.8 3.9 0.014 14.7 3.9 1.1 1 0 0 1 1 1 0 High-affinity nickel-transport protein PEP-CTERM PF07589.11 gi|433592264|ref|YP_007281760.1| - 4.4 7.5 9.9 0.77 9.9 0.3 3.3 2 1 0 2 2 2 0 PEP-CTERM motif Proton_antipo_M PF00361.20 gi|433592265|ref|YP_007281761.1| - 5.9e-76 255.5 21.4 1.4e-75 254.3 21.4 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|433592265|ref|YP_007281761.1| - 3e-15 56.0 0.1 3e-15 56.0 0.1 3.1 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF5310 PF17237.2 gi|433592265|ref|YP_007281761.1| - 0.074 12.9 0.1 0.33 10.9 0.1 2.2 1 0 0 1 1 1 0 Family of unknown function (DUF5310) Pam17 PF08566.10 gi|433592265|ref|YP_007281761.1| - 4.6 7.1 7.9 1.7 8.4 1.9 2.7 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 Proton_antipo_M PF00361.20 gi|433592266|ref|YP_007281762.1| - 1.2e-71 241.3 26.3 1.2e-71 241.3 26.3 2.1 3 0 0 3 3 3 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|433592266|ref|YP_007281762.1| - 7.7e-06 26.0 0.6 7.7e-06 26.0 0.6 3.4 5 0 0 5 5 5 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|433592267|ref|YP_007281763.1| - 1.1e-68 231.6 23.2 1.1e-68 231.6 23.2 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|433592267|ref|YP_007281763.1| - 9.4e-05 22.4 2.7 9.4e-05 22.4 2.7 2.7 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Lig_chan PF00060.26 gi|433592267|ref|YP_007281763.1| - 0.84 9.5 8.3 0.12 12.2 0.6 2.6 2 0 0 2 2 2 0 Ligand-gated ion channel Oxidored_q5_N PF01059.17 gi|433592267|ref|YP_007281763.1| - 1.6 8.8 7.8 0.56 10.3 0.9 3.0 2 1 0 2 2 2 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus DHHA1 PF02272.19 gi|433592268|ref|YP_007281764.1| - 6.1e-14 52.6 0.5 1.6e-13 51.2 0.5 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|433592268|ref|YP_007281764.1| - 1.2e-12 47.9 0.0 2.5e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 DHH family TrkA_N PF02254.18 gi|433592268|ref|YP_007281764.1| - 3e-10 40.4 0.0 7.9e-10 39.0 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain CBS PF00571.28 gi|433592269|ref|YP_007281765.1| - 2e-24 85.8 2.6 5.7e-11 42.7 0.1 2.6 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|433592269|ref|YP_007281765.1| - 1.2e-08 35.1 0.1 3e-08 33.8 0.1 1.7 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|433592269|ref|YP_007281765.1| - 0.012 15.6 0.1 0.093 12.8 0.1 2.1 1 1 0 1 1 1 0 Putative ParB-like nuclease Dehyd-heme_bind PF09098.10 gi|433592269|ref|YP_007281765.1| - 0.056 13.1 0.1 0.085 12.5 0.1 1.4 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding GatB_N PF02934.15 gi|433592270|ref|YP_007281766.1| - 2.1e-98 329.1 0.0 3.2e-98 328.5 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|433592270|ref|YP_007281766.1| - 4e-41 140.4 0.0 5.8e-41 139.8 0.0 1.3 1 0 0 1 1 1 1 GatB domain MazE_antitoxin PF04014.18 gi|433592271|ref|YP_007281767.1| - 0.00063 19.6 0.2 0.001 18.9 0.2 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|433592271|ref|YP_007281767.1| - 0.0013 19.1 0.0 0.0016 18.8 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin PIN PF01850.21 gi|433592272|ref|YP_007281768.1| - 4.9e-20 72.3 0.8 5.5e-20 72.1 0.8 1.0 1 0 0 1 1 1 1 PIN domain AMP-binding PF00501.28 gi|433592273|ref|YP_007281769.1| - 2.2e-74 250.6 0.0 2.9e-74 250.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433592273|ref|YP_007281769.1| - 2.5e-23 82.8 0.1 6e-23 81.6 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|433592273|ref|YP_007281769.1| - 1.6e-09 37.5 0.1 1.6e-09 37.5 0.1 3.9 5 0 0 5 5 5 1 Acetyl-coenzyme A synthetase N-terminus adh_short_C2 PF13561.6 gi|433592274|ref|YP_007281770.1| - 4.5e-34 118.0 0.0 7.2e-34 117.4 0.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433592274|ref|YP_007281770.1| - 9.6e-32 110.0 0.0 1.2e-31 109.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433592274|ref|YP_007281770.1| - 0.016 15.2 0.2 0.034 14.1 0.1 1.6 1 1 0 2 2 2 0 KR domain Epimerase PF01370.21 gi|433592274|ref|YP_007281770.1| - 0.026 14.0 0.1 0.046 13.2 0.1 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family PALP PF00291.25 gi|433592274|ref|YP_007281770.1| - 0.038 13.4 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme PAS_4 PF08448.10 gi|433592275|ref|YP_007281771.1| - 3.2e-62 207.6 23.9 2e-11 44.1 0.8 6.6 6 0 0 6 6 6 6 PAS fold PAS_9 PF13426.7 gi|433592275|ref|YP_007281771.1| - 2.2e-51 172.5 0.2 1.1e-14 54.5 0.0 6.5 6 0 0 6 6 6 6 PAS domain PAS PF00989.25 gi|433592275|ref|YP_007281771.1| - 7.3e-36 122.6 7.4 9.1e-13 48.2 0.1 6.1 5 1 1 6 6 6 4 PAS fold HATPase_c PF02518.26 gi|433592275|ref|YP_007281771.1| - 2.1e-26 92.6 0.0 4.5e-26 91.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|433592275|ref|YP_007281771.1| - 7.3e-21 74.3 4.9 2.3e-06 27.8 0.0 6.7 7 0 0 7 7 6 3 PAS fold PAS_8 PF13188.7 gi|433592275|ref|YP_007281771.1| - 4.9e-20 71.1 8.0 1.2e-05 25.2 0.1 6.6 6 0 0 6 6 6 4 PAS domain HisKA PF00512.25 gi|433592275|ref|YP_007281771.1| - 3.3e-10 39.9 0.4 4e-09 36.4 0.1 3.1 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|433592275|ref|YP_007281771.1| - 5.7e-07 29.7 3.5 9.8 6.4 0.0 7.7 6 1 1 7 7 7 1 PAS fold HATPase_c_5 PF14501.6 gi|433592275|ref|YP_007281771.1| - 0.0048 16.8 0.0 0.0092 15.9 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_10 PF13596.6 gi|433592275|ref|YP_007281771.1| - 0.005 17.4 0.1 6.1 7.5 0.0 3.5 3 0 0 3 3 2 1 PAS domain HATPase_c_2 PF13581.6 gi|433592275|ref|YP_007281771.1| - 0.009 16.0 0.1 0.033 14.1 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF3247 PF11607.8 gi|433592275|ref|YP_007281771.1| - 0.072 13.4 0.0 0.26 11.6 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3247) ApoLp-III PF07464.11 gi|433592275|ref|YP_007281771.1| - 0.14 12.2 0.1 6.8 6.8 0.0 2.3 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Holin_BhlA PF10960.8 gi|433592275|ref|YP_007281771.1| - 5.2 7.1 5.4 8.1 6.5 0.0 2.8 3 0 0 3 3 2 0 BhlA holin family Peptidase_M48 PF01435.18 gi|433592276|ref|YP_007281772.1| - 4.8e-18 65.7 0.0 1.1e-17 64.4 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|433592276|ref|YP_007281772.1| - 0.0013 18.0 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 TrbL PF04610.14 gi|433592276|ref|YP_007281772.1| - 0.0082 15.9 1.4 0.0082 15.9 1.4 1.6 2 0 0 2 2 2 1 TrbL/VirB6 plasmid conjugal transfer protein SprT-like PF10263.9 gi|433592276|ref|YP_007281772.1| - 0.01 15.7 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF2268 PF10026.9 gi|433592276|ref|YP_007281772.1| - 0.16 11.5 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Met_10 PF02475.16 gi|433592276|ref|YP_007281772.1| - 0.19 11.5 0.0 0.31 10.8 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein SlyX PF04102.12 gi|433592277|ref|YP_007281773.1| - 7.2e-05 23.3 3.0 0.00011 22.7 3.0 1.6 1 1 0 1 1 1 1 SlyX Tropomyosin PF00261.20 gi|433592277|ref|YP_007281773.1| - 0.00012 21.5 1.1 0.00012 21.5 1.1 1.8 2 0 0 2 2 2 1 Tropomyosin Striatin PF08232.12 gi|433592277|ref|YP_007281773.1| - 0.032 14.8 0.4 0.04 14.5 0.4 1.1 1 0 0 1 1 1 0 Striatin family CENP-Q PF13094.6 gi|433592277|ref|YP_007281773.1| - 0.038 14.2 2.1 0.042 14.1 2.1 1.0 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit FlaC_arch PF05377.11 gi|433592277|ref|YP_007281773.1| - 0.049 14.0 0.8 0.087 13.2 0.8 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF4407 PF14362.6 gi|433592277|ref|YP_007281773.1| - 0.051 12.9 2.2 0.063 12.6 2.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Wtap PF17098.5 gi|433592277|ref|YP_007281773.1| - 0.087 12.8 0.8 0.087 12.8 0.8 1.6 2 0 0 2 2 2 0 WTAP/Mum2p family bZIP_1 PF00170.21 gi|433592277|ref|YP_007281773.1| - 0.12 12.4 0.5 0.17 12.0 0.5 1.2 1 0 0 1 1 1 0 bZIP transcription factor PspB PF06667.12 gi|433592277|ref|YP_007281773.1| - 0.16 12.1 1.4 0.64 10.1 1.4 1.9 1 1 0 1 1 1 0 Phage shock protein B IFP_35_N PF07334.13 gi|433592277|ref|YP_007281773.1| - 0.16 12.0 0.7 0.31 11.1 0.3 1.7 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus ZapB PF06005.12 gi|433592277|ref|YP_007281773.1| - 0.38 11.2 3.5 0.54 10.7 3.5 1.5 1 1 0 1 1 1 0 Cell division protein ZapB LPP PF04728.13 gi|433592277|ref|YP_007281773.1| - 0.92 9.9 0.1 0.92 9.9 0.1 2.0 2 0 0 2 2 2 0 Lipoprotein leucine-zipper SMC_N PF02463.19 gi|433592278|ref|YP_007281774.1| - 7.8e-51 172.6 50.3 4.8e-50 170.0 50.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|433592278|ref|YP_007281774.1| - 3.2e-31 108.1 0.0 7.7e-31 106.8 0.0 1.7 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|433592278|ref|YP_007281774.1| - 4.1e-12 47.0 23.7 4.1e-12 47.0 23.7 8.8 2 2 3 5 5 1 1 AAA domain AAA_21 PF13304.6 gi|433592278|ref|YP_007281774.1| - 3.9e-11 43.3 4.1 3.6e-06 27.0 0.1 5.0 3 2 0 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Spc7 PF08317.11 gi|433592278|ref|YP_007281774.1| - 3.8e-10 39.1 138.7 0.0027 16.7 29.1 8.3 2 2 6 8 8 8 6 Spc7 kinetochore protein AAA_13 PF13166.6 gi|433592278|ref|YP_007281774.1| - 2.2e-07 30.0 106.0 0.012 14.3 10.7 5.9 3 2 2 6 6 6 4 AAA domain Atg14 PF10186.9 gi|433592278|ref|YP_007281774.1| - 3.1e-07 29.8 92.4 0.011 14.9 21.6 6.6 2 2 4 6 6 6 3 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_29 PF13555.6 gi|433592278|ref|YP_007281774.1| - 1.7e-06 27.7 0.0 5.3e-06 26.1 0.0 1.9 2 0 0 2 2 1 1 P-loop containing region of AAA domain GAS PF13851.6 gi|433592278|ref|YP_007281774.1| - 6e-06 25.8 121.5 0.0069 15.8 7.6 7.7 2 2 3 7 7 7 4 Growth-arrest specific micro-tubule binding ATG16 PF08614.11 gi|433592278|ref|YP_007281774.1| - 1.4e-05 25.4 145.5 0.0044 17.3 19.9 8.2 3 2 5 9 9 8 6 Autophagy protein 16 (ATG16) DUF1664 PF07889.12 gi|433592278|ref|YP_007281774.1| - 9.5e-05 22.4 74.5 0.0089 16.1 2.8 9.7 3 2 4 10 10 10 5 Protein of unknown function (DUF1664) DUF3584 PF12128.8 gi|433592278|ref|YP_007281774.1| - 0.00016 19.4 47.7 0.00016 19.4 47.7 4.1 2 2 2 4 4 4 2 Protein of unknown function (DUF3584) MscS_porin PF12795.7 gi|433592278|ref|YP_007281774.1| - 0.00017 21.2 110.3 0.00033 20.3 10.7 6.0 3 2 0 5 5 5 3 Mechanosensitive ion channel porin domain DUF3450 PF11932.8 gi|433592278|ref|YP_007281774.1| - 0.00033 20.0 9.4 0.00033 20.0 9.4 9.0 3 2 7 10 10 10 2 Protein of unknown function (DUF3450) Laminin_II PF06009.12 gi|433592278|ref|YP_007281774.1| - 0.00035 20.6 71.7 0.014 15.4 7.4 8.8 5 2 4 10 10 9 4 Laminin Domain II KASH_CCD PF14662.6 gi|433592278|ref|YP_007281774.1| - 0.00052 19.9 20.3 0.00052 19.9 20.3 6.9 3 2 3 6 6 4 1 Coiled-coil region of CCDC155 or KASH EzrA PF06160.12 gi|433592278|ref|YP_007281774.1| - 0.0014 16.9 16.4 0.0014 16.9 16.4 5.2 2 2 4 6 6 6 2 Septation ring formation regulator, EzrA APG6_N PF17675.1 gi|433592278|ref|YP_007281774.1| - 0.0019 18.7 175.8 0.0021 18.6 23.5 8.9 3 2 5 8 8 8 3 Apg6 coiled-coil region AAA_15 PF13175.6 gi|433592278|ref|YP_007281774.1| - 0.0019 18.0 57.1 0.28 10.9 37.5 5.2 2 2 1 3 3 2 2 AAA ATPase domain ZapB PF06005.12 gi|433592278|ref|YP_007281774.1| - 0.0023 18.4 6.3 0.0023 18.4 6.3 13.3 4 4 5 10 10 8 2 Cell division protein ZapB DUF4407 PF14362.6 gi|433592278|ref|YP_007281774.1| - 0.0024 17.3 110.0 0.005 16.2 15.2 6.8 2 2 4 6 6 6 4 Domain of unknown function (DUF4407) Fib_alpha PF08702.10 gi|433592278|ref|YP_007281774.1| - 0.0045 17.2 6.5 0.0045 17.2 6.5 7.1 3 2 5 8 8 8 4 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.9 gi|433592278|ref|YP_007281774.1| - 0.005 16.9 149.9 0.012 15.7 26.5 8.3 2 2 5 7 7 6 6 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 SHE3 PF17078.5 gi|433592278|ref|YP_007281774.1| - 0.0053 16.5 9.4 0.0053 16.5 9.4 6.3 2 2 3 5 5 3 1 SWI5-dependent HO expression protein 3 Fez1 PF06818.15 gi|433592278|ref|YP_007281774.1| - 0.012 16.1 119.5 0.019 15.4 14.5 7.3 2 2 4 6 6 5 0 Fez1 Baculo_PEP_C PF04513.12 gi|433592278|ref|YP_007281774.1| - 0.038 14.0 33.0 0.12 12.4 2.3 7.3 4 2 2 7 7 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus TPR_MLP1_2 PF07926.12 gi|433592278|ref|YP_007281774.1| - 0.35 10.9 132.3 0.8 9.8 3.3 8.9 3 2 3 7 7 7 0 TPR/MLP1/MLP2-like protein DUF4201 PF13870.6 gi|433592278|ref|YP_007281774.1| - 0.59 9.8 107.2 0.22 11.3 9.3 9.2 2 2 5 8 8 8 0 Domain of unknown function (DUF4201) DUF724 PF05266.14 gi|433592278|ref|YP_007281774.1| - 0.8 9.5 103.5 0.011 15.6 13.6 7.8 2 2 5 7 7 6 0 Protein of unknown function (DUF724) ERM PF00769.19 gi|433592278|ref|YP_007281774.1| - 3 7.6 160.1 0.51 10.1 21.1 5.8 2 2 2 5 5 5 0 Ezrin/radixin/moesin family FliJ PF02050.16 gi|433592278|ref|YP_007281774.1| - 3.1 8.0 98.2 0.064 13.5 3.9 8.5 4 2 4 8 8 8 0 Flagellar FliJ protein AAA_16 PF13191.6 gi|433592278|ref|YP_007281774.1| - 3.7 7.9 0.0 3.7 7.9 0.0 5.6 4 2 0 4 4 2 0 AAA ATPase domain FPP PF05911.11 gi|433592278|ref|YP_007281774.1| - 3.8 5.6 109.1 0.73 8.0 15.4 5.3 2 2 3 5 5 5 0 Filament-like plant protein, long coiled-coil UPF0242 PF06785.11 gi|433592278|ref|YP_007281774.1| - 4.3 7.4 135.6 0.039 14.0 24.7 7.9 2 2 5 7 7 7 0 Uncharacterised protein family (UPF0242) N-terminus HMMR_N PF15905.5 gi|433592278|ref|YP_007281774.1| - 4.5 6.7 124.2 0.073 12.5 16.3 5.0 3 2 1 5 5 4 0 Hyaluronan mediated motility receptor N-terminal ADIP PF11559.8 gi|433592278|ref|YP_007281774.1| - 5.2 7.1 102.8 0.05 13.7 10.6 8.8 2 2 7 9 9 8 0 Afadin- and alpha -actinin-Binding SMC_ScpA PF02616.14 gi|433592279|ref|YP_007281775.1| - 3.3e-14 53.4 0.0 8.1e-10 39.0 0.0 2.4 2 0 0 2 2 2 2 Segregation and condensation protein ScpA Spo0M PF07070.11 gi|433592280|ref|YP_007281776.1| - 1.6e-67 227.1 0.0 1.9e-67 226.9 0.0 1.1 1 0 0 1 1 1 1 SpoOM protein T6SS_TssF PF05947.12 gi|433592280|ref|YP_007281776.1| - 0.0079 14.8 0.1 0.012 14.2 0.1 1.2 1 0 0 1 1 1 1 Type VI secretion system, TssF Pribosyltran PF00156.27 gi|433592281|ref|YP_007281777.1| - 3.3e-17 62.5 0.0 4.6e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|433592281|ref|YP_007281777.1| - 0.031 13.7 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase ThiC_Rad_SAM PF01964.18 gi|433592282|ref|YP_007281778.1| - 1e-190 633.9 0.0 1.2e-190 633.8 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family zinc_ribbon_2 PF13240.6 gi|433592282|ref|YP_007281778.1| - 0.19 11.5 0.2 0.39 10.5 0.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF3887 PF13026.6 gi|433592283|ref|YP_007281779.1| - 4.4e-07 30.6 0.0 7.9e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) DLH PF01738.18 gi|433592283|ref|YP_007281779.1| - 4e-05 23.3 0.0 0.056 13.0 0.0 2.7 2 1 0 2 2 2 2 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|433592283|ref|YP_007281779.1| - 0.00019 20.8 0.0 0.0033 16.7 0.0 2.3 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|433592283|ref|YP_007281779.1| - 0.0011 19.6 13.7 0.005 17.5 13.7 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 gi|433592283|ref|YP_007281779.1| - 0.0019 18.0 0.0 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.12 gi|433592283|ref|YP_007281779.1| - 0.039 12.6 0.1 0.062 12.0 0.1 1.2 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.21 gi|433592283|ref|YP_007281779.1| - 0.047 13.2 0.0 1.2 8.5 0.0 2.3 1 1 0 1 1 1 0 Prolyl oligopeptidase family PhzC-PhzF PF02567.16 gi|433592284|ref|YP_007281780.1| - 9.8e-66 222.1 0.0 1.1e-65 221.9 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.11 gi|433592284|ref|YP_007281780.1| - 0.043 12.9 0.0 0.07 12.2 0.0 1.3 1 0 0 1 1 1 0 Proline racemase PPDK_N PF01326.19 gi|433592286|ref|YP_007281782.1| - 1e-108 363.5 0.1 1.5e-108 362.9 0.1 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|433592286|ref|YP_007281782.1| - 1.8e-84 283.4 0.0 2.5e-84 282.8 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|433592286|ref|YP_007281782.1| - 2.8e-27 94.2 3.3 7.3e-27 92.9 3.3 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain RdRP PF05183.12 gi|433592286|ref|YP_007281782.1| - 0.0019 16.9 0.0 0.016 13.8 0.0 2.0 2 0 0 2 2 2 1 RNA dependent RNA polymerase HTH_5 PF01022.20 gi|433592288|ref|YP_007281784.1| - 5.2e-20 71.0 0.1 6.3e-17 61.2 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|433592288|ref|YP_007281784.1| - 6e-16 58.3 0.9 4.6e-12 45.8 0.2 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.19 gi|433592288|ref|YP_007281784.1| - 1e-12 47.7 0.2 1.2e-05 25.1 0.1 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|433592288|ref|YP_007281784.1| - 4.1e-12 45.8 1.4 8.6e-08 32.0 0.2 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|433592288|ref|YP_007281784.1| - 7.4e-08 31.8 0.4 1.4e-06 27.7 0.5 2.7 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|433592288|ref|YP_007281784.1| - 1.4e-07 31.3 0.1 2.8e-06 27.1 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|433592288|ref|YP_007281784.1| - 7.5e-07 29.0 0.3 0.00044 20.2 0.1 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|433592288|ref|YP_007281784.1| - 1.5e-06 27.9 0.9 0.0033 17.2 0.1 3.2 3 1 0 3 3 3 2 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|433592288|ref|YP_007281784.1| - 1.8e-06 28.2 0.0 0.0021 18.4 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator Fe_dep_repress PF01325.19 gi|433592288|ref|YP_007281784.1| - 2.8e-05 24.2 0.0 7.4e-05 22.9 0.0 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|433592288|ref|YP_007281784.1| - 7e-05 23.2 0.3 0.00041 20.8 0.1 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|433592288|ref|YP_007281784.1| - 8.8e-05 22.4 0.0 0.00018 21.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_CodY PF08222.11 gi|433592288|ref|YP_007281784.1| - 0.00014 21.3 0.1 0.00035 20.0 0.0 1.6 2 0 0 2 2 1 1 CodY helix-turn-helix domain PadR PF03551.14 gi|433592288|ref|YP_007281784.1| - 0.00025 21.0 0.2 0.0028 17.6 0.0 2.7 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family DprA_WH PF17782.1 gi|433592288|ref|YP_007281784.1| - 0.00035 20.6 3.1 0.0015 18.6 0.0 2.9 3 1 0 3 3 2 1 DprA winged helix domain DUF742 PF05331.11 gi|433592288|ref|YP_007281784.1| - 0.00075 19.3 0.2 0.38 10.6 0.1 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF742) DUF4423 PF14394.6 gi|433592288|ref|YP_007281784.1| - 0.0013 18.4 0.1 0.31 10.7 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4423) HTH_10 PF04967.12 gi|433592288|ref|YP_007281784.1| - 0.0023 17.7 0.0 0.0072 16.1 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GntR PF00392.21 gi|433592288|ref|YP_007281784.1| - 0.0036 16.9 0.2 0.11 12.1 0.0 2.7 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family HxlR PF01638.17 gi|433592288|ref|YP_007281784.1| - 0.0037 17.1 0.0 0.04 13.8 0.0 2.2 2 0 0 2 2 2 1 HxlR-like helix-turn-helix LexA_DNA_bind PF01726.16 gi|433592288|ref|YP_007281784.1| - 0.0038 17.0 0.0 0.032 14.0 0.0 2.3 2 0 0 2 2 2 1 LexA DNA binding domain FeoC PF09012.10 gi|433592288|ref|YP_007281784.1| - 0.0043 17.1 0.0 0.49 10.5 0.0 2.5 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_AsnC-type PF13404.6 gi|433592288|ref|YP_007281784.1| - 0.0055 16.5 0.1 0.057 13.3 0.1 2.7 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain DUF2250 PF10007.9 gi|433592288|ref|YP_007281784.1| - 0.0056 16.8 0.0 0.22 11.6 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) DUF2513 PF10711.9 gi|433592288|ref|YP_007281784.1| - 0.0066 16.7 0.1 0.15 12.4 0.0 2.5 2 1 1 3 3 3 1 Hypothetical protein (DUF2513) DDRGK PF09756.9 gi|433592288|ref|YP_007281784.1| - 0.011 15.3 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 DDRGK domain ArsR PF09824.9 gi|433592288|ref|YP_007281784.1| - 0.031 13.9 0.0 0.12 12.0 0.0 1.9 2 1 1 3 3 3 0 ArsR transcriptional regulator RP-C PF03428.13 gi|433592288|ref|YP_007281784.1| - 0.032 13.9 0.0 0.1 12.2 0.0 1.8 3 0 0 3 3 2 0 Replication protein C N-terminal domain HTH_36 PF13730.6 gi|433592288|ref|YP_007281784.1| - 0.057 13.4 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|433592288|ref|YP_007281784.1| - 0.058 13.4 0.0 3 7.9 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix Cdc6_C PF09079.11 gi|433592288|ref|YP_007281784.1| - 0.062 13.3 0.0 0.86 9.6 0.0 2.5 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain BLACT_WH PF17778.1 gi|433592288|ref|YP_007281784.1| - 0.13 12.3 0.3 0.13 12.3 0.3 3.0 4 0 0 4 4 3 0 Beta-lactamase associated winged helix domain HTH_40 PF14493.6 gi|433592288|ref|YP_007281784.1| - 0.16 12.5 0.0 0.81 10.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain ABC_tran_CTD PF16326.5 gi|433592289|ref|YP_007281785.1| - 0.0012 19.1 2.6 0.0019 18.4 2.2 1.6 1 1 0 1 1 1 1 ABC transporter C-terminal domain PI3K_P85_iSH2 PF16454.5 gi|433592289|ref|YP_007281785.1| - 0.0045 16.6 0.1 0.0058 16.2 0.1 1.1 1 0 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain APG6_N PF17675.1 gi|433592289|ref|YP_007281785.1| - 0.0095 16.5 3.7 0.013 16.0 3.7 1.1 1 0 0 1 1 1 1 Apg6 coiled-coil region CdvA PF18822.1 gi|433592289|ref|YP_007281785.1| - 0.011 15.5 1.1 0.018 14.9 1.1 1.2 1 0 0 1 1 1 0 CdvA-like coiled-coil domain DUF4200 PF13863.6 gi|433592289|ref|YP_007281785.1| - 0.016 15.6 2.3 0.023 15.1 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) CENP-F_leu_zip PF10473.9 gi|433592289|ref|YP_007281785.1| - 0.027 14.5 2.4 0.04 13.9 2.4 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 M PF02370.16 gi|433592289|ref|YP_007281785.1| - 0.076 13.6 0.5 0.46 11.2 0.1 2.3 2 0 0 2 2 2 0 M protein repeat DUF4349 PF14257.6 gi|433592289|ref|YP_007281785.1| - 0.082 12.3 10.4 0.12 11.8 9.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4349) FapA PF03961.13 gi|433592289|ref|YP_007281785.1| - 0.14 10.8 0.2 0.18 10.4 0.2 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF3450 PF11932.8 gi|433592289|ref|YP_007281785.1| - 0.17 11.2 2.9 0.24 10.7 2.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF724 PF05266.14 gi|433592289|ref|YP_007281785.1| - 0.23 11.3 0.7 0.33 10.8 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Spc7 PF08317.11 gi|433592289|ref|YP_007281785.1| - 0.29 10.0 1.9 0.38 9.6 1.9 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF1192 PF06698.11 gi|433592289|ref|YP_007281785.1| - 0.4 10.8 5.5 0.45 10.6 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) acVLRF1 PF18859.1 gi|433592291|ref|YP_007281787.1| - 1.1e-35 122.7 5.4 1.1e-35 122.7 5.4 2.2 2 1 0 2 2 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|433592291|ref|YP_007281787.1| - 5.3e-08 33.2 0.8 5.3e-08 33.2 0.8 1.9 2 0 0 2 2 1 1 Bacterial archaeo-eukaryotic release factor family 10 bZIP_2 PF07716.15 gi|433592291|ref|YP_007281787.1| - 1.9e-05 24.6 8.9 0.021 14.9 1.0 2.6 2 0 0 2 2 2 2 Basic region leucine zipper eRF1_2 PF03464.15 gi|433592291|ref|YP_007281787.1| - 6e-05 23.4 0.0 9.7e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 DUF1192 PF06698.11 gi|433592291|ref|YP_007281787.1| - 0.00052 20.0 10.1 0.36 10.9 6.3 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF1192) HOOK PF05622.12 gi|433592291|ref|YP_007281787.1| - 0.0038 15.4 3.5 0.0046 15.2 3.5 1.1 1 0 0 1 1 1 1 HOOK protein Taxilin PF09728.9 gi|433592291|ref|YP_007281787.1| - 0.0042 16.3 2.2 0.0059 15.8 2.2 1.1 1 0 0 1 1 1 1 Myosin-like coiled-coil protein Dynamitin PF04912.14 gi|433592291|ref|YP_007281787.1| - 0.006 16.0 2.3 0.008 15.5 2.3 1.1 1 0 0 1 1 1 1 Dynamitin DUF3450 PF11932.8 gi|433592291|ref|YP_007281787.1| - 0.0089 15.4 4.8 0.0089 15.4 4.8 1.5 2 0 0 2 2 1 1 Protein of unknown function (DUF3450) Leu_zip PF15294.6 gi|433592291|ref|YP_007281787.1| - 0.029 13.9 1.9 0.041 13.4 1.9 1.2 1 0 0 1 1 1 0 Leucine zipper ABC_tran_CTD PF16326.5 gi|433592291|ref|YP_007281787.1| - 0.05 13.9 8.6 0.23 11.7 0.4 2.5 1 1 1 2 2 2 0 ABC transporter C-terminal domain Jnk-SapK_ap_N PF09744.9 gi|433592291|ref|YP_007281787.1| - 0.051 13.8 6.9 0.1 12.9 6.9 1.5 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 ADIP PF11559.8 gi|433592291|ref|YP_007281787.1| - 0.052 13.6 6.0 0.089 12.9 6.0 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding YlqD PF11068.8 gi|433592291|ref|YP_007281787.1| - 0.078 13.4 2.3 0.13 12.6 2.3 1.3 1 0 0 1 1 1 0 YlqD protein FTA4 PF13093.6 gi|433592291|ref|YP_007281787.1| - 0.12 12.3 3.7 0.36 10.7 4.0 1.6 2 0 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Troponin PF00992.20 gi|433592291|ref|YP_007281787.1| - 0.16 12.2 7.0 0.29 11.4 7.0 1.4 1 0 0 1 1 1 0 Troponin bZIP_1 PF00170.21 gi|433592291|ref|YP_007281787.1| - 0.17 12.0 8.2 3.2 7.9 1.2 2.5 1 1 1 2 2 2 0 bZIP transcription factor DUF724 PF05266.14 gi|433592291|ref|YP_007281787.1| - 0.21 11.4 1.4 0.31 10.9 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) FlaC_arch PF05377.11 gi|433592291|ref|YP_007281787.1| - 0.23 11.9 0.8 5.5 7.5 0.1 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) TPR_MLP1_2 PF07926.12 gi|433592291|ref|YP_007281787.1| - 0.26 11.4 9.2 0.7 10.0 9.2 1.6 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Prefoldin PF02996.17 gi|433592291|ref|YP_007281787.1| - 0.29 11.1 3.0 35 4.4 0.4 3.3 1 1 1 3 3 3 0 Prefoldin subunit Atg14 PF10186.9 gi|433592291|ref|YP_007281787.1| - 0.37 9.8 4.6 0.17 10.9 2.3 1.5 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 FapA PF03961.13 gi|433592291|ref|YP_007281787.1| - 0.41 9.2 1.0 0.58 8.7 1.0 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Tropomyosin_1 PF12718.7 gi|433592291|ref|YP_007281787.1| - 0.49 10.5 11.8 0.096 12.8 8.0 1.7 2 0 0 2 2 1 0 Tropomyosin like CLZ PF16526.5 gi|433592291|ref|YP_007281787.1| - 0.51 10.7 6.4 1.5 9.2 1.8 2.8 1 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Nup188_C PF18378.1 gi|433592291|ref|YP_007281787.1| - 0.53 9.1 3.5 0.78 8.5 3.5 1.1 1 0 0 1 1 1 0 Nuclear pore protein NUP188 C-terminal domain Fmp27_WPPW PF10359.9 gi|433592291|ref|YP_007281787.1| - 0.61 8.9 2.7 0.86 8.4 2.7 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain TMF_DNA_bd PF12329.8 gi|433592291|ref|YP_007281787.1| - 0.61 10.1 6.7 8.5 6.5 0.4 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Spc7 PF08317.11 gi|433592291|ref|YP_007281787.1| - 0.79 8.6 4.4 1.2 7.9 4.4 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4407 PF14362.6 gi|433592291|ref|YP_007281787.1| - 0.82 9.0 3.8 1.3 8.3 3.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) APG6_N PF17675.1 gi|433592291|ref|YP_007281787.1| - 1.1 9.8 8.9 1.4 9.5 7.2 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region Prefoldin_2 PF01920.20 gi|433592291|ref|YP_007281787.1| - 1.4 8.9 6.1 6.1 6.9 0.5 2.3 1 1 1 2 2 2 0 Prefoldin subunit DUF4140 PF13600.6 gi|433592291|ref|YP_007281787.1| - 2 8.9 12.2 2.9 8.4 3.8 2.8 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF3584 PF12128.8 gi|433592291|ref|YP_007281787.1| - 2.1 5.8 7.8 3 5.2 7.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF883 PF05957.13 gi|433592291|ref|YP_007281787.1| - 2.4 8.8 10.2 8.7 7.0 6.4 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) UPF0242 PF06785.11 gi|433592291|ref|YP_007281787.1| - 3.2 7.8 4.5 5 7.2 4.5 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FUSC PF04632.12 gi|433592291|ref|YP_007281787.1| - 3.3 6.1 5.3 5 5.5 5.3 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF1515 PF07439.11 gi|433592291|ref|YP_007281787.1| - 5.1 7.2 6.7 2.6 8.1 3.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) DivIC PF04977.15 gi|433592291|ref|YP_007281787.1| - 6.3 6.7 9.7 11 5.9 1.5 2.4 1 1 1 2 2 2 0 Septum formation initiator ZapB PF06005.12 gi|433592291|ref|YP_007281787.1| - 7.3 7.1 13.2 36 4.9 13.2 2.1 1 1 0 1 1 1 0 Cell division protein ZapB Paralemmin PF03285.15 gi|433592291|ref|YP_007281787.1| - 8.1 5.9 7.8 0.25 10.9 0.8 1.9 1 1 1 2 2 2 0 Paralemmin zf-FCS PF06467.14 gi|433592293|ref|YP_007281789.1| - 0.00045 20.1 1.0 0.0023 17.8 1.0 1.8 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif VATC PF18716.1 gi|433592293|ref|YP_007281789.1| - 0.019 14.8 0.8 0.024 14.5 0.8 1.1 1 0 0 1 1 1 0 Vms1-associating treble clef domain MFS_1 PF07690.16 gi|433592294|ref|YP_007281790.1| - 3.5e-20 72.2 66.3 8e-15 54.6 43.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|433592294|ref|YP_007281790.1| - 3.4 6.4 24.9 0.044 12.6 6.3 2.4 2 0 0 2 2 2 0 Sugar (and other) transporter DUF1611 PF07755.11 gi|433592295|ref|YP_007281791.1| - 3.4e-72 242.0 0.5 4.5e-72 241.5 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|433592295|ref|YP_007281791.1| - 2.4e-29 101.4 0.6 1.9e-28 98.5 0.0 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF1611_N) Rossmann-like domain MR_MLE_C PF13378.6 gi|433592296|ref|YP_007281792.1| - 1.2e-42 146.0 0.3 1.9e-42 145.3 0.3 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|433592296|ref|YP_007281792.1| - 3.8e-14 52.9 0.0 6.4e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 gi|433592296|ref|YP_007281792.1| - 0.00041 19.6 0.0 0.00078 18.7 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus TAT_signal PF10518.9 gi|433592297|ref|YP_007281793.1| - 0.0049 16.7 4.9 0.0096 15.7 4.9 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence AAA_33 PF13671.6 gi|433592298|ref|YP_007281794.1| - 1.4e-10 41.5 0.6 1.5e-08 34.9 0.6 2.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|433592298|ref|YP_007281794.1| - 2.7e-08 34.4 0.1 7.1e-05 23.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain KTI12 PF08433.10 gi|433592298|ref|YP_007281794.1| - 2.8e-06 27.0 0.0 0.00011 21.8 0.0 2.0 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|433592298|ref|YP_007281794.1| - 3.8e-06 27.2 0.0 5.1e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433592298|ref|YP_007281794.1| - 8.5e-05 23.0 0.0 0.00013 22.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|433592298|ref|YP_007281794.1| - 0.0012 18.8 0.0 0.0026 17.7 0.0 1.5 1 1 0 1 1 1 1 NTPase CPT PF07931.12 gi|433592298|ref|YP_007281794.1| - 0.0017 18.2 0.5 0.026 14.4 0.2 2.0 1 1 1 2 2 2 1 Chloramphenicol phosphotransferase-like protein Zeta_toxin PF06414.12 gi|433592298|ref|YP_007281794.1| - 0.0024 17.2 0.0 0.0036 16.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin SRP54 PF00448.22 gi|433592298|ref|YP_007281794.1| - 0.0025 17.5 0.0 0.003 17.2 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|433592298|ref|YP_007281794.1| - 0.0026 18.1 0.0 0.0026 18.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|433592298|ref|YP_007281794.1| - 0.003 17.8 0.2 0.012 15.8 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|433592298|ref|YP_007281794.1| - 0.0059 17.0 0.0 0.15 12.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|433592298|ref|YP_007281794.1| - 0.0064 16.2 0.0 0.0083 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain PRK PF00485.18 gi|433592298|ref|YP_007281794.1| - 0.0072 16.1 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.20 gi|433592298|ref|YP_007281794.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.14 gi|433592298|ref|YP_007281794.1| - 0.015 15.3 0.0 0.018 15.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|433592298|ref|YP_007281794.1| - 0.018 14.9 0.0 0.031 14.1 0.0 1.4 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein Cytidylate_kin PF02224.18 gi|433592298|ref|YP_007281794.1| - 0.019 14.7 0.1 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 Cytidylate kinase RNA_helicase PF00910.22 gi|433592298|ref|YP_007281794.1| - 0.022 15.1 0.0 0.032 14.6 0.0 1.3 1 0 0 1 1 1 0 RNA helicase PPK2 PF03976.14 gi|433592298|ref|YP_007281794.1| - 0.034 13.7 0.0 0.039 13.4 0.0 1.1 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) ABC_tran PF00005.27 gi|433592298|ref|YP_007281794.1| - 0.038 14.5 0.0 0.038 14.5 0.0 1.2 1 0 0 1 1 1 0 ABC transporter dNK PF01712.19 gi|433592298|ref|YP_007281794.1| - 0.05 13.5 0.0 1.9 8.3 0.0 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase MeaB PF03308.16 gi|433592298|ref|YP_007281794.1| - 0.061 12.3 0.1 0.071 12.1 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|433592298|ref|YP_007281794.1| - 0.064 13.7 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|433592298|ref|YP_007281794.1| - 0.085 12.5 0.0 0.16 11.6 0.0 1.5 2 0 0 2 2 1 0 Thymidylate kinase MMR_HSR1 PF01926.23 gi|433592298|ref|YP_007281794.1| - 0.086 12.9 0.0 0.16 12.1 0.0 1.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase Ploopntkinase3 PF18751.1 gi|433592298|ref|YP_007281794.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 RsgA_GTPase PF03193.16 gi|433592298|ref|YP_007281794.1| - 0.11 12.4 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|433592298|ref|YP_007281794.1| - 0.18 11.7 0.0 0.25 11.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|433592298|ref|YP_007281794.1| - 0.18 11.5 0.0 0.37 10.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|433592298|ref|YP_007281794.1| - 0.22 11.0 0.0 0.48 9.9 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region DUF3426 PF11906.8 gi|433592300|ref|YP_007281796.1| - 0.0026 17.9 0.0 0.0044 17.2 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3426) TAT_signal PF10518.9 gi|433592300|ref|YP_007281796.1| - 1.9 8.4 7.4 3.5 7.6 7.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CtsR_C PF17727.1 gi|433592301|ref|YP_007281797.1| - 0.15 12.2 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 CtsR C-terminal dimerization domain PspA_IM30 PF04012.12 gi|433592302|ref|YP_007281798.1| - 8e-33 113.9 32.7 8e-33 113.9 32.7 1.7 1 1 1 2 2 2 1 PspA/IM30 family Snf7 PF03357.21 gi|433592302|ref|YP_007281798.1| - 0.0015 18.1 16.9 0.0015 18.1 16.9 3.6 1 1 2 3 3 3 1 Snf7 Spc7 PF08317.11 gi|433592302|ref|YP_007281798.1| - 0.002 17.1 23.4 0.002 17.1 23.4 2.7 1 1 2 3 3 2 2 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|433592302|ref|YP_007281798.1| - 0.0068 16.7 19.2 0.22 11.8 0.4 3.8 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 YabA PF06156.13 gi|433592302|ref|YP_007281798.1| - 0.0071 17.0 24.7 0.026 15.1 4.6 3.5 1 1 2 3 3 3 2 Initiation control protein YabA DHR10 PF18595.1 gi|433592302|ref|YP_007281798.1| - 0.012 15.6 17.6 0.012 15.6 17.6 3.4 2 2 1 3 3 3 0 Designed helical repeat protein 10 domain DUF1664 PF07889.12 gi|433592302|ref|YP_007281798.1| - 0.015 15.4 6.5 0.015 15.4 6.5 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) APG6_N PF17675.1 gi|433592302|ref|YP_007281798.1| - 0.019 15.5 24.4 0.019 15.5 24.4 3.8 1 1 2 3 3 3 0 Apg6 coiled-coil region DUF3535 PF12054.8 gi|433592302|ref|YP_007281798.1| - 0.021 14.1 7.6 0.034 13.4 7.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3535) Prominin PF05478.11 gi|433592302|ref|YP_007281798.1| - 0.23 9.4 11.8 0.28 9.1 11.8 1.1 1 0 0 1 1 1 0 Prominin CENP-F_leu_zip PF10473.9 gi|433592302|ref|YP_007281798.1| - 0.88 9.6 39.3 3.4 7.7 15.9 3.4 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF948 PF06103.11 gi|433592302|ref|YP_007281798.1| - 1.6 9.0 12.3 4.1 7.7 2.4 3.7 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) NABP PF07990.12 gi|433592302|ref|YP_007281798.1| - 1.7 8.1 6.2 0.73 9.3 3.8 1.6 1 1 0 1 1 1 0 Nucleic acid binding protein NABP DUF3584 PF12128.8 gi|433592302|ref|YP_007281798.1| - 3 5.3 42.1 0.75 7.2 29.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Baculo_PEP_C PF04513.12 gi|433592302|ref|YP_007281798.1| - 3.3 7.7 13.7 14 5.7 4.8 3.4 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus TPR_4 PF07721.14 gi|433592302|ref|YP_007281798.1| - 4 8.3 7.0 1.6 9.6 1.1 3.1 2 1 1 3 3 3 0 Tetratricopeptide repeat DUF5082 PF16888.5 gi|433592302|ref|YP_007281798.1| - 4.2 7.7 26.6 2.2 8.6 10.5 3.6 1 1 1 3 3 3 0 Domain of unknown function (DUF5082) ERM PF00769.19 gi|433592302|ref|YP_007281798.1| - 4.3 7.1 46.7 0.1 12.4 39.2 1.8 1 1 1 2 2 1 0 Ezrin/radixin/moesin family AAA_13 PF13166.6 gi|433592302|ref|YP_007281798.1| - 5.5 5.5 30.1 0.59 8.7 25.1 1.7 1 1 0 1 1 1 0 AAA domain ALMT PF11744.8 gi|433592302|ref|YP_007281798.1| - 6.9 5.4 12.4 8 5.2 12.4 1.3 1 0 0 1 1 1 0 Aluminium activated malate transporter YlqD PF11068.8 gi|433592302|ref|YP_007281798.1| - 7 7.0 33.6 0.15 12.4 11.9 3.7 1 1 2 3 3 3 0 YlqD protein Hydrolase_4 PF12146.8 gi|433592303|ref|YP_007281799.1| - 3e-08 33.2 0.0 3e-05 23.4 0.0 2.9 1 1 1 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|433592303|ref|YP_007281799.1| - 6.5e-05 22.6 0.0 8.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|433592303|ref|YP_007281799.1| - 7.7e-05 22.4 0.0 0.0011 18.6 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|433592303|ref|YP_007281799.1| - 0.00027 20.6 0.0 0.00033 20.3 0.0 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Thioesterase PF00975.20 gi|433592303|ref|YP_007281799.1| - 0.00056 20.1 0.4 0.034 14.3 0.1 2.2 1 1 1 2 2 2 1 Thioesterase domain Abhydrolase_6 PF12697.7 gi|433592303|ref|YP_007281799.1| - 0.0012 19.5 8.3 0.0031 18.1 8.3 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|433592303|ref|YP_007281799.1| - 0.007 16.2 0.2 0.04 13.8 0.1 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peripla_BP_3 PF13377.6 gi|433592303|ref|YP_007281799.1| - 0.0073 16.7 0.2 0.015 15.6 0.2 1.6 1 1 0 1 1 1 1 Periplasmic binding protein-like domain VirJ PF06057.11 gi|433592303|ref|YP_007281799.1| - 0.014 15.3 0.0 0.78 9.6 0.0 2.1 1 1 1 2 2 2 0 Bacterial virulence protein (VirJ) Lipase_3 PF01764.25 gi|433592303|ref|YP_007281799.1| - 0.014 15.2 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) LIP PF03583.14 gi|433592303|ref|YP_007281799.1| - 0.16 11.2 0.1 0.21 10.9 0.1 1.1 1 0 0 1 1 1 0 Secretory lipase BAAT_C PF08840.11 gi|433592303|ref|YP_007281799.1| - 0.25 11.2 0.0 0.35 10.8 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF2892 PF11127.8 gi|433592304|ref|YP_007281800.1| - 1.6 8.8 5.6 2.2 8.4 5.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF87 PF01935.17 gi|433592305|ref|YP_007281801.1| - 1.5e-08 35.1 0.0 2.8e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|433592305|ref|YP_007281801.1| - 2.8e-06 26.2 0.2 0.0044 15.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|433592305|ref|YP_007281801.1| - 0.0025 16.8 0.0 0.2 10.5 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|433592305|ref|YP_007281801.1| - 0.0082 15.1 0.0 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain HAS-barrel PF09378.10 gi|433592305|ref|YP_007281801.1| - 0.012 15.7 0.0 0.048 13.8 0.0 2.0 1 0 0 1 1 1 0 HAS barrel domain ResIII PF04851.15 gi|433592305|ref|YP_007281801.1| - 0.03 14.3 0.0 8.1 6.4 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|433592305|ref|YP_007281801.1| - 0.04 14.2 0.0 0.19 12.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|433592305|ref|YP_007281801.1| - 0.065 12.6 0.0 0.18 11.1 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family T2SSE PF00437.20 gi|433592305|ref|YP_007281801.1| - 0.068 12.2 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Cohesin PF00963.18 gi|433592306|ref|YP_007281802.1| - 6.1e-07 29.8 0.0 1e-06 29.1 0.0 1.4 1 0 0 1 1 1 1 Cohesin domain DUF3357 PF11837.8 gi|433592306|ref|YP_007281802.1| - 0.0033 17.8 0.3 0.0067 16.9 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3357) HTH_20 PF12840.7 gi|433592307|ref|YP_007281803.1| - 1.9e-06 27.8 11.0 0.00044 20.2 0.2 2.6 2 1 0 2 2 2 2 Helix-turn-helix domain Dimerisation PF08100.11 gi|433592307|ref|YP_007281803.1| - 0.046 13.7 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 Dimerisation domain HTH_IclR PF09339.10 gi|433592307|ref|YP_007281803.1| - 0.079 12.8 3.4 2.3 8.1 0.7 2.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HEAT_2 PF13646.6 gi|433592307|ref|YP_007281803.1| - 0.16 12.4 3.9 0.66 10.4 0.5 2.6 2 1 0 2 2 2 0 HEAT repeats HTH_5 PF01022.20 gi|433592307|ref|YP_007281803.1| - 0.26 11.2 1.8 1.2 9.0 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family BLUF PF04940.12 gi|433592308|ref|YP_007281804.1| - 0.18 12.0 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 Sensors of blue-light using FAD NurA PF09376.10 gi|433592309|ref|YP_007281805.1| - 9e-15 55.0 0.0 1.2e-14 54.6 0.0 1.1 1 0 0 1 1 1 1 NurA domain ADK_lid PF05191.14 gi|433592310|ref|YP_007281806.1| - 0.0048 16.9 1.8 0.19 11.8 0.0 2.1 1 1 0 2 2 2 1 Adenylate kinase, active site lid zf-C2H2 PF00096.26 gi|433592310|ref|YP_007281806.1| - 0.0068 16.8 0.6 3.9 8.1 0.1 2.2 2 0 0 2 2 2 2 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.12 gi|433592310|ref|YP_007281806.1| - 0.044 13.3 5.5 0.88 9.1 0.1 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf-CGNR PF11706.8 gi|433592310|ref|YP_007281806.1| - 0.044 13.6 0.6 0.069 13.0 0.6 1.3 1 0 0 1 1 1 0 CGNR zinc finger zf_UBZ PF18439.1 gi|433592310|ref|YP_007281806.1| - 0.049 13.2 0.4 3.1 7.4 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|433592310|ref|YP_007281806.1| - 0.06 13.5 2.2 0.12 12.5 2.2 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|433592310|ref|YP_007281806.1| - 0.071 13.6 2.3 8.6 7.0 0.1 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DZR PF12773.7 gi|433592310|ref|YP_007281806.1| - 0.077 13.0 1.0 0.14 12.2 1.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|433592310|ref|YP_007281806.1| - 0.087 12.6 1.9 1.9 8.3 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|433592310|ref|YP_007281806.1| - 0.12 12.1 0.6 0.37 10.6 0.6 1.8 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Nudix_N_2 PF14803.6 gi|433592310|ref|YP_007281806.1| - 0.13 12.2 1.4 4.9 7.1 0.0 2.4 2 0 0 2 2 2 0 Nudix N-terminal DUF35_N PF12172.8 gi|433592310|ref|YP_007281806.1| - 0.21 11.5 2.3 8.8 6.3 0.7 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) GATA PF00320.27 gi|433592310|ref|YP_007281806.1| - 0.48 10.1 2.9 3.4 7.3 1.4 2.6 2 1 0 2 2 2 0 GATA zinc finger iPGM_N PF06415.13 gi|433592311|ref|YP_007281807.1| - 1.4e-77 260.0 0.9 1.8e-77 259.6 0.9 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|433592311|ref|YP_007281807.1| - 5.2e-69 232.4 0.0 1.4e-68 231.0 0.0 1.6 1 1 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|433592311|ref|YP_007281807.1| - 3.6e-09 36.7 0.7 9.6e-09 35.3 0.1 2.1 3 0 0 3 3 3 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|433592311|ref|YP_007281807.1| - 0.00029 20.3 0.1 0.0009 18.7 0.0 2.0 3 1 0 3 3 3 1 Sulfatase PglZ PF08665.12 gi|433592311|ref|YP_007281807.1| - 0.001 19.2 0.0 0.0024 18.0 0.0 1.6 1 0 0 1 1 1 1 PglZ domain HisKA_7TM PF16927.5 gi|433592312|ref|YP_007281808.1| - 2.7e-32 112.6 19.4 3.7e-32 112.2 19.4 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|433592312|ref|YP_007281808.1| - 4.2e-12 46.6 0.0 8.9e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|433592312|ref|YP_007281808.1| - 1.6e-10 41.2 1.6 1.3e-09 38.3 0.4 3.0 2 1 0 2 2 2 1 PAS fold PAS PF00989.25 gi|433592312|ref|YP_007281808.1| - 3.1e-08 33.6 0.1 5.9e-06 26.3 0.1 2.4 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|433592312|ref|YP_007281808.1| - 6.2e-07 29.3 0.1 1.6e-06 28.0 0.1 1.7 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|433592312|ref|YP_007281808.1| - 8.2e-07 29.2 0.0 1.4e-05 25.3 0.0 2.7 1 1 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|433592312|ref|YP_007281808.1| - 0.00011 22.1 0.1 0.00022 21.2 0.1 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|433592312|ref|YP_007281808.1| - 0.00032 20.6 0.1 0.00072 19.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|433592312|ref|YP_007281808.1| - 0.029 13.9 0.2 0.029 13.9 0.2 3.5 3 1 1 4 4 4 0 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|433592312|ref|YP_007281808.1| - 0.057 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Na_Ca_ex PF01699.24 gi|433592315|ref|YP_007281811.1| - 3e-40 137.6 34.2 9.1e-21 74.4 15.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Cys_Met_Meta_PP PF01053.20 gi|433592316|ref|YP_007281812.1| - 7.6e-139 462.5 0.0 8.6e-139 462.3 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|433592316|ref|YP_007281812.1| - 1.5e-07 30.9 0.0 2.2e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|433592316|ref|YP_007281812.1| - 6.7e-05 22.4 1.2 0.00018 20.9 0.5 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family SepSecS PF05889.13 gi|433592316|ref|YP_007281812.1| - 0.0087 14.8 0.0 0.014 14.1 0.0 1.3 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|433592316|ref|YP_007281812.1| - 0.012 14.6 0.0 0.021 13.8 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|433592316|ref|YP_007281812.1| - 0.024 13.9 0.0 0.045 13.0 0.0 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase Robl_LC7 PF03259.17 gi|433592317|ref|YP_007281813.1| - 0.12 12.2 0.1 0.54 10.1 0.1 1.9 2 0 0 2 2 2 0 Roadblock/LC7 domain DDE_3 PF13358.6 gi|433592320|ref|YP_007281816.1| - 1.6e-14 53.9 0.0 1.5e-13 50.8 0.0 2.1 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|433592320|ref|YP_007281816.1| - 2.3e-11 44.1 0.3 9.4e-11 42.2 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|433592320|ref|YP_007281816.1| - 4.4e-10 39.4 0.0 1.4e-09 37.9 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433592320|ref|YP_007281816.1| - 6.7e-09 35.3 0.0 1.5e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|433592320|ref|YP_007281816.1| - 1.2e-05 24.8 0.0 8.6e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|433592320|ref|YP_007281816.1| - 2.7e-05 24.2 0.0 6.8e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|433592320|ref|YP_007281816.1| - 0.0018 18.3 0.1 0.0041 17.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|433592320|ref|YP_007281816.1| - 0.0023 17.4 0.0 0.0074 15.8 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 DDE_1 PF03184.19 gi|433592320|ref|YP_007281816.1| - 0.0027 17.4 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF746 PF05344.11 gi|433592320|ref|YP_007281816.1| - 0.016 15.1 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.6 gi|433592320|ref|YP_007281816.1| - 0.041 14.4 0.0 0.091 13.3 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.12 gi|433592320|ref|YP_007281816.1| - 0.058 13.1 0.1 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 rve PF00665.26 gi|433592320|ref|YP_007281816.1| - 0.064 13.5 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain AsnC_trans_reg PF01037.21 gi|433592321|ref|YP_007281817.1| - 9.7e-12 44.7 0.1 1.1e-11 44.5 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain TrkA_N PF02254.18 gi|433592322|ref|YP_007281818.1| - 2.6e-23 82.5 0.1 4.3e-23 81.8 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|433592322|ref|YP_007281818.1| - 6.4e-12 45.1 0.4 1.7e-11 43.8 0.1 1.9 2 0 0 2 2 2 1 TrkA-C domain ApbA PF02558.16 gi|433592322|ref|YP_007281818.1| - 0.0003 20.4 0.0 0.00054 19.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|433592322|ref|YP_007281818.1| - 0.00044 20.8 0.0 0.00089 19.8 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|433592322|ref|YP_007281818.1| - 0.00047 20.6 0.1 0.00086 19.7 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|433592322|ref|YP_007281818.1| - 0.00058 19.2 0.0 0.00081 18.7 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|433592322|ref|YP_007281818.1| - 0.0013 18.1 0.1 0.0019 17.5 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|433592322|ref|YP_007281818.1| - 0.0013 18.4 1.1 0.0014 18.3 0.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase IlvN PF07991.12 gi|433592322|ref|YP_007281818.1| - 0.0023 17.5 0.0 0.0039 16.8 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|433592322|ref|YP_007281818.1| - 0.0055 16.1 0.1 0.023 14.1 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|433592322|ref|YP_007281818.1| - 0.0072 16.5 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|433592322|ref|YP_007281818.1| - 0.0072 16.2 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|433592322|ref|YP_007281818.1| - 0.0076 15.8 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|433592322|ref|YP_007281818.1| - 0.022 15.0 0.1 0.041 14.1 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 gi|433592322|ref|YP_007281818.1| - 0.054 13.0 0.1 0.097 12.1 0.1 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_2 PF03446.15 gi|433592322|ref|YP_007281818.1| - 0.054 13.7 0.1 0.23 11.6 0.0 2.0 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 gi|433592322|ref|YP_007281818.1| - 0.075 13.5 0.1 0.12 12.9 0.1 1.5 1 1 0 1 1 1 0 XdhC Rossmann domain AlaDh_PNT_C PF01262.21 gi|433592322|ref|YP_007281818.1| - 0.077 12.3 0.1 0.1 11.9 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.13 gi|433592322|ref|YP_007281818.1| - 0.21 11.1 0.2 0.32 10.5 0.2 1.2 1 0 0 1 1 1 0 NmrA-like family AsnC_trans_reg PF01037.21 gi|433592323|ref|YP_007281819.1| - 5.3e-11 42.3 0.1 5.8e-11 42.2 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Thymidylate_kin PF02223.17 gi|433592324|ref|YP_007281820.1| - 2.4e-37 128.4 0.0 4.2e-37 127.6 0.0 1.4 1 1 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|433592324|ref|YP_007281820.1| - 8.7e-08 32.3 0.0 4.2e-07 30.0 0.0 1.8 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.6 gi|433592324|ref|YP_007281820.1| - 2.8e-06 27.5 0.0 8.9e-06 25.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|433592324|ref|YP_007281820.1| - 2e-05 25.2 0.0 0.00026 21.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|433592324|ref|YP_007281820.1| - 0.0019 18.5 1.6 0.004 17.4 1.5 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|433592324|ref|YP_007281820.1| - 0.019 15.4 0.0 4.8 7.6 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|433592324|ref|YP_007281820.1| - 0.027 14.8 0.0 0.25 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|433592324|ref|YP_007281820.1| - 0.077 13.4 0.3 0.14 12.5 0.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain NAD_binding_10 PF13460.6 gi|433592325|ref|YP_007281821.1| - 1.1e-26 93.9 0.1 2.3e-26 92.8 0.1 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|433592325|ref|YP_007281821.1| - 7.2e-16 58.4 0.0 7.8e-15 55.0 0.0 2.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|433592325|ref|YP_007281821.1| - 2.9e-12 46.3 0.0 4.7e-06 25.9 0.0 2.5 2 1 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.13 gi|433592325|ref|YP_007281821.1| - 1.9e-10 40.7 0.0 2.6e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.19 gi|433592325|ref|YP_007281821.1| - 2.9e-08 33.1 0.0 4.6e-07 29.1 0.0 2.2 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|433592325|ref|YP_007281821.1| - 8.2e-06 25.2 0.0 0.024 13.8 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein GDP_Man_Dehyd PF16363.5 gi|433592325|ref|YP_007281821.1| - 7.3e-05 22.3 0.2 0.00025 20.6 0.1 1.9 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase Glyco_transf_4 PF13439.6 gi|433592325|ref|YP_007281821.1| - 0.007 16.4 0.1 0.011 15.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433592325|ref|YP_007281821.1| - 0.0088 16.5 0.1 0.017 15.5 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain KR PF08659.10 gi|433592325|ref|YP_007281821.1| - 0.016 15.1 0.1 0.1 12.5 0.1 2.0 2 0 0 2 2 2 0 KR domain Polysacc_synt_2 PF02719.15 gi|433592325|ref|YP_007281821.1| - 0.016 14.3 0.0 1.2 8.1 0.1 2.1 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|433592325|ref|YP_007281821.1| - 0.028 13.9 0.2 0.052 13.0 0.2 1.5 1 0 0 1 1 1 0 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|433592325|ref|YP_007281821.1| - 0.054 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|433592325|ref|YP_007281821.1| - 0.074 13.2 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|433592325|ref|YP_007281821.1| - 0.084 13.5 0.0 0.59 10.7 0.1 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Tubulin PF00091.25 gi|433592326|ref|YP_007281822.1| - 1.5e-27 97.1 0.0 3e-27 96.1 0.0 1.5 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|433592326|ref|YP_007281822.1| - 0.062 12.5 0.1 0.1 11.8 0.1 1.5 1 0 0 1 1 1 0 Tubulin like Endotoxin_C2 PF18449.1 gi|433592326|ref|YP_007281822.1| - 0.1 13.0 1.4 0.17 12.3 0.1 2.0 2 0 0 2 2 2 0 Delta endotoxin CofC PF01983.16 gi|433592327|ref|YP_007281823.1| - 1.9e-38 131.8 0.0 2.4e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|433592327|ref|YP_007281823.1| - 5.1e-06 26.9 3.5 9e-06 26.1 3.5 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Radical_SAM PF04055.21 gi|433592328|ref|YP_007281824.1| - 9.8e-12 45.6 0.1 5.9e-11 43.0 0.1 2.0 1 1 1 2 2 2 1 Radical SAM superfamily MafB19-deam PF14437.6 gi|433592329|ref|YP_007281825.1| - 3.8e-17 62.3 0.0 4.4e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase dCMP_cyt_deam_1 PF00383.23 gi|433592329|ref|YP_007281825.1| - 3.8e-16 58.8 0.0 5.3e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region SNAD4 PF18750.1 gi|433592329|ref|YP_007281825.1| - 2e-06 27.9 0.0 2.8e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC2 PF18772.1 gi|433592329|ref|YP_007281825.1| - 8.9e-05 22.6 0.0 0.00012 22.2 0.0 1.1 1 0 0 1 1 1 1 APOBEC2 NAD1 PF18778.1 gi|433592329|ref|YP_007281825.1| - 0.0001 22.4 0.0 0.00014 22.0 0.0 1.1 1 0 0 1 1 1 1 Novel AID APOBEC clade 1 NAD2 PF18782.1 gi|433592329|ref|YP_007281825.1| - 0.00016 21.8 0.0 0.00021 21.4 0.0 1.1 1 0 0 1 1 1 1 Novel AID APOBEC clade 2 APOBEC_N PF08210.11 gi|433592329|ref|YP_007281825.1| - 0.0011 18.9 0.0 0.0014 18.6 0.0 1.1 1 0 0 1 1 1 1 APOBEC-like N-terminal domain Bd3614-deam PF14439.6 gi|433592329|ref|YP_007281825.1| - 0.0069 16.5 0.4 0.011 15.8 0.4 1.4 1 1 0 1 1 1 1 Bd3614-like deaminase APOBEC3 PF18771.1 gi|433592329|ref|YP_007281825.1| - 0.036 14.2 0.0 0.051 13.7 0.0 1.2 1 0 0 1 1 1 0 APOBEC3 RecR PF02132.15 gi|433592329|ref|YP_007281825.1| - 0.069 12.7 0.3 0.13 11.8 0.3 1.5 1 0 0 1 1 1 0 RecR protein adh_short_C2 PF13561.6 gi|433592330|ref|YP_007281826.1| - 2.3e-70 236.8 3.1 2.7e-70 236.6 3.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433592330|ref|YP_007281826.1| - 3.7e-55 186.4 1.7 4.5e-55 186.2 1.7 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433592330|ref|YP_007281826.1| - 6.3e-13 49.0 1.3 8.1e-13 48.7 1.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433592330|ref|YP_007281826.1| - 8.5e-05 22.1 1.4 0.00015 21.4 1.4 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|433592330|ref|YP_007281826.1| - 0.00042 19.4 0.1 0.00061 18.9 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family 3HCDH_N PF02737.18 gi|433592330|ref|YP_007281826.1| - 0.0096 15.8 0.4 0.019 14.9 0.4 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 gi|433592330|ref|YP_007281826.1| - 0.016 15.9 0.3 0.036 14.8 0.3 1.5 1 0 0 1 1 1 0 Methyltransferase domain RmlD_sub_bind PF04321.17 gi|433592330|ref|YP_007281826.1| - 0.016 14.3 0.8 0.025 13.7 0.8 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain THF_DHG_CYH_C PF02882.19 gi|433592330|ref|YP_007281826.1| - 0.043 13.1 0.0 0.26 10.6 0.0 2.2 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_7 PF13241.6 gi|433592330|ref|YP_007281826.1| - 0.052 14.0 0.2 0.1 13.0 0.2 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|433592330|ref|YP_007281826.1| - 0.13 12.5 1.5 0.2 11.9 1.5 1.4 1 0 0 1 1 1 0 TrkA-N domain Cyclase PF04199.13 gi|433592331|ref|YP_007281827.1| - 7.9e-23 81.2 0.2 1.3e-22 80.5 0.2 1.3 1 0 0 1 1 1 1 Putative cyclase Radical_SAM PF04055.21 gi|433592333|ref|YP_007281829.1| - 5.7e-15 56.1 0.1 1.3e-14 54.9 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily SAICAR_synt PF01259.18 gi|433592334|ref|YP_007281830.1| - 2.9e-25 89.3 0.0 5.7e-25 88.4 0.0 1.4 1 1 0 1 1 1 1 SAICAR synthetase MFS_3 PF05977.13 gi|433592336|ref|YP_007281832.1| - 8.8e-21 73.9 24.6 1.2e-20 73.4 24.6 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.16 gi|433592336|ref|YP_007281832.1| - 1.9e-13 50.1 48.5 1.1e-11 44.3 37.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PT-VENN PF04829.13 gi|433592336|ref|YP_007281832.1| - 4.8 7.4 6.7 0.99 9.5 1.1 2.8 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif ThiS PF02597.20 gi|433592337|ref|YP_007281833.1| - 4.6e-07 30.4 0.0 5.3e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.12 gi|433592337|ref|YP_007281833.1| - 0.012 15.9 0.2 0.016 15.5 0.2 1.1 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I FmdA_AmdA PF03069.15 gi|433592338|ref|YP_007281834.1| - 9.4e-57 192.5 0.0 5.5e-55 186.7 0.0 2.0 1 1 0 1 1 1 1 Acetamidase/Formamidase family UPF0547 PF10571.9 gi|433592338|ref|YP_007281834.1| - 0.046 13.8 5.7 0.41 10.8 0.7 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_ligase_ZBD PF03119.16 gi|433592338|ref|YP_007281834.1| - 0.11 12.5 0.8 11 6.1 0.2 3.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|433592338|ref|YP_007281834.1| - 0.12 12.4 0.3 0.26 11.4 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|433592338|ref|YP_007281834.1| - 0.15 11.5 3.9 4.3 6.9 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.6 gi|433592338|ref|YP_007281834.1| - 0.16 11.6 1.7 8.3 6.1 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Ribosomal_S27e PF01667.17 gi|433592338|ref|YP_007281834.1| - 0.17 11.6 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 HypA PF01155.19 gi|433592338|ref|YP_007281834.1| - 0.18 11.8 0.0 0.4 10.7 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|433592338|ref|YP_007281834.1| - 0.25 11.1 1.9 4.4 7.2 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433592338|ref|YP_007281834.1| - 0.67 10.1 2.8 2.1 8.5 2.8 1.9 1 1 1 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|433592338|ref|YP_007281834.1| - 1.2 8.9 4.5 14 5.4 4.5 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF2116 PF09889.9 gi|433592339|ref|YP_007281835.1| - 0.02 14.9 1.8 0.12 12.4 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) HscB_4_cys PF18256.1 gi|433592339|ref|YP_007281835.1| - 0.02 14.7 5.1 0.24 11.3 0.4 2.2 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Nudix_N_2 PF14803.6 gi|433592339|ref|YP_007281835.1| - 0.021 14.8 2.4 0.24 11.4 2.4 2.0 1 1 0 1 1 1 0 Nudix N-terminal zf-FLZ PF04570.14 gi|433592339|ref|YP_007281835.1| - 0.039 13.4 3.5 0.055 12.9 0.7 2.0 2 0 0 2 2 2 0 zinc-finger of the FCS-type, C2-C2 GFA PF04828.14 gi|433592339|ref|YP_007281835.1| - 0.079 13.3 1.8 2.2 8.7 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme SH3_4 PF06347.13 gi|433592339|ref|YP_007281835.1| - 0.14 12.0 0.1 0.22 11.4 0.1 1.3 1 1 0 1 1 1 0 Bacterial SH3 domain Formyl_trans_N PF00551.19 gi|433592340|ref|YP_007281836.1| - 4.1e-42 144.0 0.0 6e-42 143.4 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.6 gi|433592340|ref|YP_007281836.1| - 2.4e-09 37.0 0.3 7.8e-09 35.4 0.2 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|433592340|ref|YP_007281836.1| - 2.1e-05 24.2 0.4 7.4e-05 22.4 0.1 2.2 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.6 gi|433592340|ref|YP_007281836.1| - 0.00011 22.7 0.2 0.00026 21.5 0.2 1.6 1 0 0 1 1 1 1 ACT domain PurS PF02700.14 gi|433592342|ref|YP_007281838.1| - 2.6e-26 91.6 0.1 2.9e-26 91.4 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF2184 PF09950.9 gi|433592342|ref|YP_007281838.1| - 0.022 14.2 0.1 0.024 14.1 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) SIMPL PF04402.14 gi|433592342|ref|YP_007281838.1| - 0.03 14.8 0.8 0.033 14.6 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF541) DUF3775 PF12616.8 gi|433592342|ref|YP_007281838.1| - 0.046 13.7 1.9 0.079 13.0 1.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3775) GATase_5 PF13507.6 gi|433592343|ref|YP_007281839.1| - 1.5e-40 138.9 0.0 2e-40 138.6 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|433592343|ref|YP_007281839.1| - 9.6e-07 28.8 0.0 1.2e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|433592343|ref|YP_007281839.1| - 8.7e-05 22.4 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|433592343|ref|YP_007281839.1| - 0.00013 21.6 0.0 0.00019 21.1 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|433592343|ref|YP_007281839.1| - 0.11 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Peptidase C26 PAS_4 PF08448.10 gi|433592344|ref|YP_007281840.1| - 8.2e-40 135.5 6.8 1.3e-13 51.1 0.8 5.0 5 0 0 5 5 5 3 PAS fold PAS PF00989.25 gi|433592344|ref|YP_007281840.1| - 2.9e-38 130.3 0.2 1.1e-13 51.2 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|433592344|ref|YP_007281840.1| - 1.2e-37 128.3 0.3 1.1e-12 48.1 0.1 3.6 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 gi|433592344|ref|YP_007281840.1| - 1.7e-23 82.2 0.3 5.4e-08 32.7 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|433592344|ref|YP_007281840.1| - 4.1e-19 68.7 0.0 1.6e-06 28.3 0.0 3.5 3 0 0 3 3 3 3 PAS fold GAF_2 PF13185.6 gi|433592344|ref|YP_007281840.1| - 3.6e-18 66.2 4.1 5.6e-10 39.7 0.4 3.6 3 0 0 3 3 3 2 GAF domain HATPase_c PF02518.26 gi|433592344|ref|YP_007281840.1| - 1.1e-13 51.7 0.0 2.5e-13 50.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|433592344|ref|YP_007281840.1| - 3.1e-09 36.9 0.1 7.8e-09 35.5 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF_3 PF13492.6 gi|433592344|ref|YP_007281840.1| - 1.2e-06 28.9 0.1 0.00053 20.3 0.0 2.5 2 0 0 2 2 2 1 GAF domain Response_reg PF00072.24 gi|433592344|ref|YP_007281840.1| - 6.2e-05 23.1 0.0 0.0002 21.5 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|433592344|ref|YP_007281840.1| - 0.00082 19.4 1.6 0.012 15.6 0.2 3.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|433592344|ref|YP_007281840.1| - 0.0026 17.3 0.0 0.005 16.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase OKR_DC_1_N PF03709.15 gi|433592344|ref|YP_007281840.1| - 0.004 17.4 0.1 0.33 11.2 0.0 2.7 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.7 gi|433592344|ref|YP_007281840.1| - 0.13 12.4 3.4 15 5.8 0.4 3.8 3 1 0 3 3 3 0 PAS fold PcrB PF01884.17 gi|433592344|ref|YP_007281840.1| - 0.13 11.7 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 PcrB family PEP-CTERM PF07589.11 gi|433592345|ref|YP_007281841.1| - 0.00088 19.2 3.9 0.029 14.4 0.4 2.4 2 0 0 2 2 2 2 PEP-CTERM motif PGPGW PF09656.10 gi|433592345|ref|YP_007281841.1| - 0.015 14.7 2.9 0.021 14.3 2.9 1.3 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) MscS_TM PF12794.7 gi|433592345|ref|YP_007281841.1| - 0.068 12.0 0.6 0.077 11.8 0.6 1.0 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF3188 PF11384.8 gi|433592345|ref|YP_007281841.1| - 0.2 11.4 2.1 7.2 6.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) TGT PF01702.18 gi|433592347|ref|YP_007281843.1| - 3.3e-81 273.2 0.0 4.3e-81 272.8 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|433592347|ref|YP_007281843.1| - 0.077 13.3 0.1 12 6.3 0.0 2.4 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation HalOD1 PF18545.1 gi|433592348|ref|YP_007281844.1| - 7e-23 80.7 0.3 9.3e-23 80.3 0.3 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF4229 PF14012.6 gi|433592349|ref|YP_007281845.1| - 0.014 15.5 0.4 0.021 14.9 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) Phage_lysis PF03245.13 gi|433592350|ref|YP_007281846.1| - 0.05 13.7 0.1 0.21 11.7 0.0 2.1 2 0 0 2 2 2 0 Bacteriophage Rz lysis protein HAUS-augmin3 PF14932.6 gi|433592350|ref|YP_007281846.1| - 1.4 8.4 6.7 0.57 9.7 2.7 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Calycin_like PF13944.6 gi|433592350|ref|YP_007281846.1| - 1.7 9.0 7.8 24 5.2 0.1 4.2 3 1 1 4 4 4 0 Calycin-like beta-barrel domain DUF5591 PF17884.1 gi|433592351|ref|YP_007281847.1| - 1.3e-60 203.7 0.1 2e-60 203.1 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C2 PF14810.6 gi|433592351|ref|YP_007281847.1| - 9.6e-22 76.9 0.0 2.8e-21 75.4 0.0 1.9 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.18 gi|433592351|ref|YP_007281847.1| - 1.1e-12 47.7 0.0 3.1e-12 46.3 0.0 1.7 1 1 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|433592351|ref|YP_007281847.1| - 7.5e-12 45.0 0.2 2.5e-11 43.4 0.2 1.8 2 0 0 2 2 2 1 PUA domain DUF308 PF03729.13 gi|433592352|ref|YP_007281848.1| - 3.3e-15 56.2 40.0 4.5e-07 30.1 10.5 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) Fe_dep_repress PF01325.19 gi|433592353|ref|YP_007281849.1| - 2.5e-10 40.4 0.3 5.7e-10 39.3 0.1 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|433592353|ref|YP_007281849.1| - 4.5e-06 26.5 0.0 6.9e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repr_C PF02742.15 gi|433592353|ref|YP_007281849.1| - 6.8e-06 26.1 0.2 1.4e-05 25.1 0.2 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_12 PF08461.10 gi|433592353|ref|YP_007281849.1| - 0.00086 19.2 0.4 0.0052 16.7 0.1 2.3 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_IclR PF09339.10 gi|433592353|ref|YP_007281849.1| - 0.0077 16.0 0.1 0.024 14.4 0.1 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|433592353|ref|YP_007281849.1| - 0.011 15.6 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|433592353|ref|YP_007281849.1| - 0.014 15.7 0.0 0.051 13.9 0.0 1.8 1 1 0 2 2 2 0 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|433592353|ref|YP_007281849.1| - 0.039 13.7 0.0 0.067 13.0 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Ribosomal_S19e PF01090.19 gi|433592353|ref|YP_007281849.1| - 0.052 13.3 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_24 PF13412.6 gi|433592353|ref|YP_007281849.1| - 0.058 13.0 0.0 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|433592353|ref|YP_007281849.1| - 0.086 12.8 0.0 1.4 8.9 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Ferritin PF00210.24 gi|433592354|ref|YP_007281850.1| - 4.2e-31 107.8 9.1 5e-31 107.5 9.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF1451 PF07295.11 gi|433592354|ref|YP_007281850.1| - 0.05 13.6 8.6 0.14 12.2 1.4 2.3 1 1 0 2 2 2 0 Zinc-ribbon containing domain CorA PF01544.18 gi|433592354|ref|YP_007281850.1| - 0.11 11.8 3.4 0.17 11.2 3.4 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Osmo_CC PF08946.10 gi|433592354|ref|YP_007281850.1| - 2.1 8.7 8.5 1.2 9.4 0.1 3.0 3 0 0 3 3 3 0 Osmosensory transporter coiled coil BAT PF15915.5 gi|433592355|ref|YP_007281851.1| - 2.2e-37 128.3 7.3 2.2e-37 128.3 7.3 2.4 3 0 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|433592355|ref|YP_007281851.1| - 2.4e-20 72.1 0.0 6.5e-20 70.7 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|433592355|ref|YP_007281851.1| - 3.9e-19 69.3 0.5 1.3e-18 67.6 0.5 2.0 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.24 gi|433592355|ref|YP_007281851.1| - 5e-16 58.9 0.7 3e-15 56.4 0.2 2.3 2 1 0 2 2 2 1 Response regulator receiver domain GAF PF01590.26 gi|433592355|ref|YP_007281851.1| - 2.2e-08 34.8 0.0 5.4e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|433592355|ref|YP_007281851.1| - 0.0002 21.7 0.1 0.0011 19.3 0.0 2.1 2 0 0 2 2 2 1 GAF domain Sigma70_r4_2 PF08281.12 gi|433592355|ref|YP_007281851.1| - 0.0019 17.8 0.0 0.025 14.2 0.0 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|433592355|ref|YP_007281851.1| - 0.013 15.0 0.0 0.031 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|433592355|ref|YP_007281851.1| - 0.024 14.1 0.0 0.059 12.9 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.19 gi|433592355|ref|YP_007281851.1| - 0.083 12.5 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Response_reg PF00072.24 gi|433592356|ref|YP_007281852.1| - 1.5e-21 76.6 0.0 1.8e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DDE_Tnp_1 PF01609.21 gi|433592357|ref|YP_007281853.1| - 9.3e-17 61.4 0.0 1.4e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain Glyoxalase PF00903.25 gi|433592358|ref|YP_007281854.1| - 6.3e-16 58.7 0.0 1.2e-09 38.4 0.0 2.4 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|433592358|ref|YP_007281854.1| - 1.9e-05 24.8 4.6 0.0067 16.6 0.2 3.4 2 2 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|433592358|ref|YP_007281854.1| - 0.00066 19.9 0.6 0.09 13.1 0.1 3.4 2 2 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CppA_N PF14506.6 gi|433592358|ref|YP_007281854.1| - 0.0067 16.5 0.0 0.028 14.5 0.0 1.9 2 0 0 2 2 2 1 CppA N-terminal Acetyltransf_1 PF00583.25 gi|433592359|ref|YP_007281855.1| - 2.8e-13 50.1 0.0 4.5e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|433592359|ref|YP_007281855.1| - 2.8e-07 30.8 0.0 5.4e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|433592359|ref|YP_007281855.1| - 5.2e-07 30.0 0.0 8.4e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|433592359|ref|YP_007281855.1| - 0.00016 22.4 0.1 0.00028 21.6 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433592359|ref|YP_007281855.1| - 0.00055 19.9 0.0 0.00087 19.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433592359|ref|YP_007281855.1| - 0.028 14.4 0.0 0.38 10.8 0.0 2.2 2 0 0 2 2 2 0 FR47-like protein Acetyltransf_9 PF13527.7 gi|433592359|ref|YP_007281855.1| - 0.095 12.8 0.0 0.29 11.2 0.0 1.9 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AphA_like PF14557.6 gi|433592360|ref|YP_007281856.1| - 4.5e-11 42.8 0.0 5.1e-11 42.6 0.0 1.0 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator PadR PF03551.14 gi|433592360|ref|YP_007281856.1| - 1.2e-07 31.6 0.2 2e-07 30.9 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|433592360|ref|YP_007281856.1| - 0.087 13.0 0.0 0.16 12.2 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain DHR10 PF18595.1 gi|433592361|ref|YP_007281857.1| - 0.02 14.9 0.5 0.034 14.2 0.5 1.4 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain bact-PGI_C PF10432.9 gi|433592361|ref|YP_007281857.1| - 0.1 12.7 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal SIS domain GPW_gp25 PF04965.14 gi|433592361|ref|YP_007281857.1| - 0.11 12.3 0.9 7 6.5 1.1 2.3 1 1 1 2 2 2 0 Gene 25-like lysozyme ThiS PF02597.20 gi|433592363|ref|YP_007281859.1| - 1.5e-19 70.4 0.3 1.6e-19 70.3 0.3 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|433592363|ref|YP_007281859.1| - 0.043 13.6 0.5 2.5 8.0 0.0 2.2 2 1 0 2 2 2 0 Mut7-C ubiquitin Deltameth_res PF16020.5 gi|433592364|ref|YP_007281860.1| - 2.5 8.0 4.5 1.6 8.6 2.7 1.6 1 1 1 2 2 2 0 Deltamethrin resistance AzlC PF03591.14 gi|433592365|ref|YP_007281861.1| - 2.9e-38 131.4 12.4 2.9e-38 131.4 12.4 1.9 2 0 0 2 2 2 1 AzlC protein AzlD PF05437.12 gi|433592366|ref|YP_007281862.1| - 9.6e-17 61.0 6.5 1.1e-16 60.8 6.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) SCAMP PF04144.13 gi|433592366|ref|YP_007281862.1| - 0.4 11.0 3.7 0.2 11.9 1.2 1.6 2 0 0 2 2 2 0 SCAMP family YDG PF18657.1 gi|433592367|ref|YP_007281863.1| - 0.14 12.4 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 YDG domain preATP-grasp_3 PF18301.1 gi|433592368|ref|YP_007281864.1| - 0.044 14.0 0.3 3.1 8.1 0.0 2.1 2 0 0 2 2 2 0 pre ATP-grasp 3 domain PSK_trans_fac PF07704.11 gi|433592368|ref|YP_007281864.1| - 1.1 10.0 5.5 0.85 10.4 1.5 2.0 2 0 0 2 2 2 0 Rv0623-like transcription factor Pyridox_ox_2 PF12900.7 gi|433592369|ref|YP_007281865.1| - 8.3e-15 55.0 0.0 1.1e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|433592369|ref|YP_007281865.1| - 0.00016 21.8 0.0 0.00021 21.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Zn-ribbon_8 PF09723.10 gi|433592370|ref|YP_007281866.1| - 1.3e-10 41.2 1.6 1.5e-10 41.0 1.6 1.1 1 0 0 1 1 1 1 Zinc ribbon domain zf_UBZ PF18439.1 gi|433592370|ref|YP_007281866.1| - 1e-05 25.0 0.9 0.0035 16.9 0.4 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|433592370|ref|YP_007281866.1| - 4.2e-05 22.8 0.9 0.17 11.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|433592370|ref|YP_007281866.1| - 0.00014 21.8 5.0 0.046 13.8 0.1 2.2 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zf-Di19 PF05605.12 gi|433592370|ref|YP_007281866.1| - 0.00017 21.8 1.5 0.0038 17.5 1.5 2.0 1 1 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding Sgf11 PF08209.11 gi|433592370|ref|YP_007281866.1| - 0.00023 20.7 0.4 0.049 13.2 0.1 2.1 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) DZR PF12773.7 gi|433592370|ref|YP_007281866.1| - 0.00024 21.0 0.6 0.0003 20.7 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|433592370|ref|YP_007281866.1| - 0.00026 20.8 0.0 0.00039 20.3 0.0 1.3 1 0 0 1 1 1 1 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|433592370|ref|YP_007281866.1| - 0.00048 19.6 4.7 0.0075 15.8 0.5 2.1 1 1 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|433592370|ref|YP_007281866.1| - 0.00066 19.6 0.3 0.00086 19.2 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|433592370|ref|YP_007281866.1| - 0.00075 19.1 2.5 0.19 11.5 0.3 2.1 2 0 0 2 2 2 2 zinc-ribbon domain Elf1 PF05129.13 gi|433592370|ref|YP_007281866.1| - 0.00095 19.2 0.5 0.001 19.0 0.5 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like YacG PF03884.14 gi|433592370|ref|YP_007281866.1| - 0.002 17.8 0.8 0.47 10.2 0.1 2.1 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG zf_Rg PF17915.1 gi|433592370|ref|YP_007281866.1| - 0.0022 17.3 0.2 1.9 8.0 0.0 2.1 2 0 0 2 2 2 2 Reverse gyrase zinc finger CpXC PF14353.6 gi|433592370|ref|YP_007281866.1| - 0.0024 17.9 1.5 0.095 12.8 0.2 2.0 1 1 1 2 2 2 1 CpXC protein Nop10p PF04135.12 gi|433592370|ref|YP_007281866.1| - 0.0033 17.4 1.3 0.19 11.8 0.0 2.1 1 1 1 2 2 2 1 Nucleolar RNA-binding protein, Nop10p family HypA PF01155.19 gi|433592370|ref|YP_007281866.1| - 0.0038 17.2 0.7 0.0038 17.2 0.7 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ACC PF17848.1 gi|433592370|ref|YP_007281866.1| - 0.004 17.2 0.3 3 8.0 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-ISL3 PF14690.6 gi|433592370|ref|YP_007281866.1| - 0.0048 17.5 0.3 2.1 9.1 0.0 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNHCP PF12647.7 gi|433592370|ref|YP_007281866.1| - 0.005 16.8 0.4 0.0056 16.6 0.4 1.2 1 0 0 1 1 1 1 RNHCP domain DUF1610 PF07754.11 gi|433592370|ref|YP_007281866.1| - 0.0051 16.7 2.7 0.13 12.3 0.5 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zf-HYPF PF07503.12 gi|433592370|ref|YP_007281866.1| - 0.0059 16.3 0.7 0.01 15.6 0.7 1.4 1 1 0 1 1 1 1 HypF finger zf-IS66 PF13005.7 gi|433592370|ref|YP_007281866.1| - 0.007 16.8 1.4 0.97 9.9 0.2 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zf-dskA_traR PF01258.17 gi|433592370|ref|YP_007281866.1| - 0.0081 16.1 2.1 0.19 11.7 0.5 2.2 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger zinc-ribbons_6 PF07191.12 gi|433592370|ref|YP_007281866.1| - 0.0087 16.0 1.2 0.073 13.1 1.1 1.9 1 1 0 1 1 1 1 zinc-ribbons UPF0547 PF10571.9 gi|433592370|ref|YP_007281866.1| - 0.0098 16.0 4.7 0.11 12.6 0.7 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 DUF2072 PF09845.9 gi|433592370|ref|YP_007281866.1| - 0.0099 16.1 0.4 0.012 15.9 0.4 1.2 1 0 0 1 1 1 1 Zn-ribbon containing protein Rubredoxin PF00301.20 gi|433592370|ref|YP_007281866.1| - 0.01 15.8 0.3 3.9 7.6 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin zf-LITAF-like PF10601.9 gi|433592370|ref|YP_007281866.1| - 0.011 16.0 1.5 1.5 9.1 0.1 2.1 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain YhfH PF14149.6 gi|433592370|ref|YP_007281866.1| - 0.011 15.7 2.6 0.1 12.6 0.3 2.2 2 0 0 2 2 2 0 YhfH-like protein Ogr_Delta PF04606.12 gi|433592370|ref|YP_007281866.1| - 0.013 15.4 2.5 0.66 10.0 0.1 2.4 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger DUF2116 PF09889.9 gi|433592370|ref|YP_007281866.1| - 0.014 15.4 2.4 2.3 8.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-C2H2_4 PF13894.6 gi|433592370|ref|YP_007281866.1| - 0.014 16.2 0.6 5.9 8.0 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C3HC4_3 PF13920.6 gi|433592370|ref|YP_007281866.1| - 0.015 15.2 0.9 0.12 12.3 0.9 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.6 gi|433592370|ref|YP_007281866.1| - 0.016 15.2 0.9 0.025 14.5 0.9 1.4 1 1 0 1 1 1 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|433592370|ref|YP_007281866.1| - 0.017 14.9 1.4 0.53 10.1 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_4 PF14447.6 gi|433592370|ref|YP_007281866.1| - 0.017 15.0 0.9 0.56 10.1 1.2 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 Zn_Tnp_IS1595 PF12760.7 gi|433592370|ref|YP_007281866.1| - 0.019 14.9 2.6 0.64 10.0 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|433592370|ref|YP_007281866.1| - 0.02 14.8 2.7 0.076 12.9 2.7 1.9 1 1 0 1 1 1 0 Cysteine-rich CPXCG zf-Mss51 PF13824.6 gi|433592370|ref|YP_007281866.1| - 0.024 14.7 3.8 0.96 9.6 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-TFIIB PF13453.6 gi|433592370|ref|YP_007281866.1| - 0.024 14.0 2.4 0.057 12.8 2.7 1.5 1 1 1 2 2 2 0 Transcription factor zinc-finger Nudix_N_2 PF14803.6 gi|433592370|ref|YP_007281866.1| - 0.024 14.5 1.3 3.6 7.6 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|433592370|ref|YP_007281866.1| - 0.035 13.8 2.0 3.2 7.5 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2 PF00096.26 gi|433592370|ref|YP_007281866.1| - 0.04 14.4 0.4 4.6 7.9 0.0 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Lar_restr_allev PF14354.6 gi|433592370|ref|YP_007281866.1| - 0.04 14.3 2.1 0.054 13.9 2.1 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-DNA_Pol PF08996.10 gi|433592370|ref|YP_007281866.1| - 0.05 13.4 0.7 0.059 13.1 0.7 1.2 1 1 0 1 1 1 0 DNA Polymerase alpha zinc finger Terminase_GpA PF05876.12 gi|433592370|ref|YP_007281866.1| - 0.056 12.0 0.6 0.057 12.0 0.6 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) PknG_rubred PF16919.5 gi|433592370|ref|YP_007281866.1| - 0.058 13.6 0.5 0.063 13.4 0.5 1.1 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain zf_C2H2_10 PF18414.1 gi|433592370|ref|YP_007281866.1| - 0.064 12.8 1.5 3.2 7.4 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-RRN7 PF11781.8 gi|433592370|ref|YP_007281866.1| - 0.066 12.9 3.3 3.7 7.3 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PhnA_Zn_Ribbon PF08274.12 gi|433592370|ref|YP_007281866.1| - 0.07 13.1 4.5 0.22 11.5 0.8 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon FYDLN_acid PF09538.10 gi|433592370|ref|YP_007281866.1| - 0.072 13.8 0.7 2.2 9.0 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_10 PF10058.9 gi|433592370|ref|YP_007281866.1| - 0.078 12.7 0.9 0.15 11.8 0.9 1.5 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF983 PF06170.12 gi|433592370|ref|YP_007281866.1| - 0.079 13.4 1.1 10 6.6 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-C2H2_6 PF13912.6 gi|433592370|ref|YP_007281866.1| - 0.086 12.9 1.7 2.5 8.2 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Acetone_carb_G PF08882.11 gi|433592370|ref|YP_007281866.1| - 0.092 12.9 2.1 0.4 10.8 2.5 1.8 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Prok-RING_1 PF14446.6 gi|433592370|ref|YP_007281866.1| - 0.1 12.6 2.7 1.8 8.6 2.7 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Rad50_zn_hook PF04423.14 gi|433592370|ref|YP_007281866.1| - 0.14 12.0 2.6 1.4 8.8 0.1 2.1 1 1 1 2 2 2 0 Rad50 zinc hook motif DUF1815 PF08844.10 gi|433592370|ref|YP_007281866.1| - 0.14 12.1 0.8 0.23 11.5 0.1 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1815) Prim_Zn_Ribbon PF08273.12 gi|433592370|ref|YP_007281866.1| - 0.31 11.4 4.9 6.1 7.2 1.0 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase TerY_C PF15616.6 gi|433592370|ref|YP_007281866.1| - 0.52 10.4 3.5 5.2 7.2 0.2 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain DUF3797 PF12677.7 gi|433592370|ref|YP_007281866.1| - 1.6 8.6 4.6 4.4 7.3 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) HTH_10 PF04967.12 gi|433592371|ref|YP_007281867.1| - 2.6e-20 71.9 0.1 4.1e-20 71.3 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|433592371|ref|YP_007281867.1| - 0.088 12.6 0.1 0.41 10.5 0.1 2.0 1 1 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.7 gi|433592372|ref|YP_007281868.1| - 1.2e-11 44.5 1.1 1.7e-11 44.0 1.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|433592372|ref|YP_007281868.1| - 3.3e-05 23.7 0.0 4.5e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ArsR PF09824.9 gi|433592372|ref|YP_007281868.1| - 8.3e-05 22.2 0.0 0.0001 21.9 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_IclR PF09339.10 gi|433592372|ref|YP_007281868.1| - 0.00016 21.4 0.1 0.00026 20.7 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433592372|ref|YP_007281868.1| - 0.00039 20.3 0.1 0.0006 19.6 0.1 1.3 1 0 0 1 1 1 1 MarR family Ribosomal_S25 PF03297.15 gi|433592372|ref|YP_007281868.1| - 0.0006 20.0 0.0 0.00075 19.7 0.0 1.1 1 0 0 1 1 1 1 S25 ribosomal protein FUR PF01475.19 gi|433592372|ref|YP_007281868.1| - 0.036 14.2 0.0 0.046 13.9 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family AFOR_C PF01314.18 gi|433592373|ref|YP_007281869.1| - 1.1e-117 393.4 6.3 1.3e-117 393.1 6.3 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|433592373|ref|YP_007281869.1| - 3.5e-72 242.4 0.0 5.2e-72 241.9 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF1328 PF07043.13 gi|433592374|ref|YP_007281870.1| - 6.1e-11 42.4 19.9 7.9e-11 42.0 19.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF2973 PF11189.8 gi|433592374|ref|YP_007281870.1| - 3.7 7.7 10.6 0.69 10.0 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2973) BAT PF15915.5 gi|433592375|ref|YP_007281871.1| - 1.3e-49 168.1 15.4 1.3e-49 168.1 15.4 3.4 4 2 0 4 4 4 1 GAF and HTH_10 associated domain PAS_9 PF13426.7 gi|433592375|ref|YP_007281871.1| - 1.5e-24 86.3 0.0 2e-21 76.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain HTH_10 PF04967.12 gi|433592375|ref|YP_007281871.1| - 1.4e-19 69.7 0.0 3.4e-19 68.4 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.25 gi|433592375|ref|YP_007281871.1| - 6.9e-17 61.5 0.5 6.8e-12 45.4 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|433592375|ref|YP_007281871.1| - 1.5e-13 51.0 0.5 2.4e-10 40.6 0.1 3.1 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|433592375|ref|YP_007281871.1| - 2.6e-11 43.6 0.0 7.1e-11 42.2 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|433592375|ref|YP_007281871.1| - 6.2e-11 42.1 0.2 0.00015 21.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.6 gi|433592375|ref|YP_007281871.1| - 5e-05 23.6 1.3 0.00071 19.9 0.2 3.2 2 2 1 3 3 3 1 GAF domain DUF134 PF02001.16 gi|433592375|ref|YP_007281871.1| - 0.055 14.0 0.0 0.18 12.4 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_11 PF08279.12 gi|433592375|ref|YP_007281871.1| - 0.063 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain GAF_3 PF13492.6 gi|433592375|ref|YP_007281871.1| - 0.096 13.0 0.0 0.29 11.5 0.0 2.0 1 0 0 1 1 1 0 GAF domain Zn-ribbon_8 PF09723.10 gi|433592376|ref|YP_007281872.1| - 2.6e-05 24.3 2.3 0.0056 16.8 0.2 2.1 2 0 0 2 2 2 2 Zinc ribbon domain UPF0547 PF10571.9 gi|433592376|ref|YP_007281872.1| - 0.00047 20.2 2.3 0.015 15.4 0.1 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|433592376|ref|YP_007281872.1| - 0.00057 19.2 0.4 0.16 11.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|433592376|ref|YP_007281872.1| - 0.0014 18.1 1.6 0.085 12.4 0.2 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|433592376|ref|YP_007281872.1| - 0.0034 17.3 0.5 0.0042 17.0 0.5 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|433592376|ref|YP_007281872.1| - 0.022 14.7 5.2 0.65 10.0 0.4 2.3 1 1 1 2 2 2 0 Nudix N-terminal zinc_ribbon_10 PF10058.9 gi|433592376|ref|YP_007281872.1| - 0.032 14.0 0.4 4.3 7.1 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF2310 PF10071.9 gi|433592376|ref|YP_007281872.1| - 0.047 13.0 0.2 0.056 12.7 0.2 1.1 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) zf-NADH-PPase PF09297.11 gi|433592376|ref|YP_007281872.1| - 0.069 12.8 3.4 0.26 11.0 0.1 2.5 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|433592376|ref|YP_007281872.1| - 0.07 12.9 2.2 1.2 8.9 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|433592376|ref|YP_007281872.1| - 0.086 12.8 5.2 2.7 8.0 5.7 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|433592376|ref|YP_007281872.1| - 0.13 12.3 2.3 3.9 7.5 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-H2C2_2 PF13465.6 gi|433592376|ref|YP_007281872.1| - 0.13 12.7 0.7 12 6.5 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Rubredoxin PF00301.20 gi|433592376|ref|YP_007281872.1| - 0.63 10.1 5.5 20 5.3 5.6 2.2 1 1 1 2 2 2 0 Rubredoxin T2SSM PF04612.12 gi|433592377|ref|YP_007281873.1| - 1.4 9.0 4.4 0.61 10.1 1.4 1.9 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M NUDIX PF00293.28 gi|433592378|ref|YP_007281874.1| - 1.4e-10 41.3 0.5 1.9e-10 40.9 0.5 1.1 1 0 0 1 1 1 1 NUDIX domain LysR_substrate PF03466.20 gi|433592378|ref|YP_007281874.1| - 0.004 16.6 0.4 0.0077 15.6 0.4 1.4 1 1 0 1 1 1 1 LysR substrate binding domain PadR PF03551.14 gi|433592379|ref|YP_007281875.1| - 1.1e-13 50.9 0.1 1.3e-13 50.7 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|433592379|ref|YP_007281875.1| - 0.0001 22.7 0.0 0.00013 22.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|433592379|ref|YP_007281875.1| - 0.0012 18.9 0.0 0.0016 18.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|433592379|ref|YP_007281875.1| - 0.0025 17.8 0.0 0.01 15.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|433592379|ref|YP_007281875.1| - 0.015 15.0 0.0 0.018 14.8 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DUF1495 PF07381.11 gi|433592379|ref|YP_007281875.1| - 0.017 15.0 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Replic_Relax PF13814.6 gi|433592379|ref|YP_007281875.1| - 0.038 14.1 0.1 0.044 13.9 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation Penicillinase_R PF03965.16 gi|433592379|ref|YP_007281875.1| - 0.16 12.3 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor TAT_signal PF10518.9 gi|433592382|ref|YP_007281878.1| - 0.027 14.3 4.4 0.038 13.9 4.4 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Putative_PNPOx PF01243.20 gi|433592383|ref|YP_007281879.1| - 8.6e-16 57.9 0.0 1.1e-15 57.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|433592383|ref|YP_007281879.1| - 4.3e-09 36.5 0.1 4.8e-09 36.3 0.1 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|433592383|ref|YP_007281879.1| - 0.00012 21.7 0.0 0.00013 21.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like TPP_enzyme_N PF02776.18 gi|433592384|ref|YP_007281880.1| - 3.5e-53 179.7 0.1 7e-53 178.8 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|433592384|ref|YP_007281880.1| - 3.9e-35 120.5 0.1 8.1e-35 119.5 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|433592384|ref|YP_007281880.1| - 1.5e-31 109.3 1.1 1.3e-30 106.2 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CarboxypepD_reg PF13620.6 gi|433592385|ref|YP_007281881.1| - 0.014 15.7 0.9 0.054 13.8 0.9 2.1 1 1 0 1 1 1 0 Carboxypeptidase regulatory-like domain DUF2012 PF09430.10 gi|433592385|ref|YP_007281881.1| - 0.16 12.1 0.0 0.38 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) NPP1 PF05630.11 gi|433592385|ref|YP_007281881.1| - 0.29 11.2 0.9 0.57 10.3 0.9 1.5 1 1 0 1 1 1 0 Necrosis inducing protein (NPP1) Methyltrn_RNA_2 PF04013.12 gi|433592387|ref|YP_007281883.1| - 6.9e-52 176.0 0.0 7.7e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Methyltrans_RNA PF04452.14 gi|433592387|ref|YP_007281883.1| - 0.046 13.0 0.0 0.06 12.7 0.0 1.3 1 0 0 1 1 1 0 RNA methyltransferase HalOD1 PF18545.1 gi|433592388|ref|YP_007281884.1| - 3.9e-14 52.7 1.0 6.6e-14 51.9 0.8 1.4 1 1 1 2 2 2 1 Halobacterial output domain 1 YdjM PF04307.14 gi|433592389|ref|YP_007281885.1| - 6.9e-12 45.0 4.1 8.6e-12 44.7 4.1 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase zf-ribbon_3 PF13248.6 gi|433592390|ref|YP_007281886.1| - 0.029 13.8 2.0 0.16 11.4 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|433592390|ref|YP_007281886.1| - 0.036 14.0 4.5 0.064 13.2 4.5 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.10 gi|433592390|ref|YP_007281886.1| - 0.23 11.6 4.0 5.4 7.2 0.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Hyr1 PF15789.5 gi|433592392|ref|YP_007281888.1| - 0.038 13.5 0.0 0.065 12.8 0.0 1.4 1 0 0 1 1 1 0 Hyphally regulated cell wall GPI-anchored protein 1 Trypsin_2 PF13365.6 gi|433592393|ref|YP_007281889.1| - 4.6e-31 108.7 5.5 8.4e-31 107.9 5.5 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|433592393|ref|YP_007281889.1| - 2.3e-12 47.2 0.9 1.4e-11 44.7 0.9 1.9 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|433592393|ref|YP_007281889.1| - 3.3e-10 40.1 0.0 6.1e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 PDZ domain UCR_Fe-S_N PF10399.9 gi|433592393|ref|YP_007281889.1| - 0.0039 16.5 0.7 0.01 15.2 0.7 1.7 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|433592393|ref|YP_007281889.1| - 0.0072 16.1 3.2 0.0072 16.1 3.2 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Pico_P2A PF00947.19 gi|433592393|ref|YP_007281889.1| - 0.046 13.7 0.1 0.1 12.6 0.1 1.5 1 0 0 1 1 1 0 Picornavirus core protein 2A PDZ_6 PF17820.1 gi|433592393|ref|YP_007281889.1| - 0.063 13.1 0.0 0.9 9.4 0.0 2.5 2 0 0 2 2 2 0 PDZ domain Peptidase_S7 PF00949.21 gi|433592393|ref|YP_007281889.1| - 0.12 12.2 1.1 0.25 11.2 0.4 1.8 2 0 0 2 2 2 0 Peptidase S7, Flavivirus NS3 serine protease THUMP PF02926.17 gi|433592394|ref|YP_007281890.1| - 2.8e-07 30.7 0.0 7.5e-07 29.3 0.0 1.7 2 0 0 2 2 2 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|433592394|ref|YP_007281890.1| - 0.0011 19.3 4.4 0.0021 18.4 1.2 2.7 3 0 0 3 3 3 1 DnaJ central domain Anti-TRAP PF15777.5 gi|433592394|ref|YP_007281890.1| - 3 7.9 9.7 2.1 8.4 4.6 3.1 2 1 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein RHH_1 PF01402.21 gi|433592395|ref|YP_007281891.1| - 0.00032 20.5 1.7 0.00039 20.3 0.4 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RNase_HII PF01351.18 gi|433592396|ref|YP_007281892.1| - 1.3e-34 119.7 0.0 1.6e-34 119.5 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII COX6C PF02937.15 gi|433592398|ref|YP_007281894.1| - 0.17 12.0 1.3 0.45 10.7 0.1 2.2 2 1 1 3 3 3 0 Cytochrome c oxidase subunit VIc CytB6-F_Fe-S PF08802.10 gi|433592398|ref|YP_007281894.1| - 0.34 11.0 4.0 16 5.7 0.8 2.9 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit DUF202 PF02656.15 gi|433592398|ref|YP_007281894.1| - 1.3 9.5 11.2 0.75 10.3 1.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF202) CPBP PF02517.16 gi|433592399|ref|YP_007281895.1| - 1.4e-10 41.3 9.5 1.4e-10 41.3 9.5 2.4 3 0 0 3 3 3 2 CPBP intramembrane metalloprotease DUF1097 PF06496.11 gi|433592399|ref|YP_007281895.1| - 3.6 7.7 23.9 0.21 11.7 7.7 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1097) Lon_C PF05362.13 gi|433592400|ref|YP_007281896.1| - 8.9e-35 120.1 3.6 1.3e-34 119.5 3.6 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|433592400|ref|YP_007281896.1| - 3.5e-29 102.0 0.0 4.8e-22 78.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|433592400|ref|YP_007281896.1| - 6.3e-17 61.6 0.1 5.1e-10 39.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|433592400|ref|YP_007281896.1| - 2.2e-14 53.5 0.0 3.6e-08 33.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.6 gi|433592400|ref|YP_007281896.1| - 3.7e-10 39.7 0.7 7.9e-10 38.6 0.7 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.14 gi|433592400|ref|YP_007281896.1| - 2.7e-09 37.2 0.0 0.0016 18.5 0.0 2.7 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|433592400|ref|YP_007281896.1| - 2.1e-06 27.6 0.1 0.0019 18.0 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|433592400|ref|YP_007281896.1| - 3.5e-06 26.3 0.1 0.083 12.0 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|433592400|ref|YP_007281896.1| - 3.8e-06 27.3 0.0 0.038 14.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|433592400|ref|YP_007281896.1| - 7.5e-05 22.6 0.2 0.18 11.7 0.0 2.9 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|433592400|ref|YP_007281896.1| - 8.3e-05 21.9 0.1 0.018 14.2 0.1 2.4 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_19 PF13245.6 gi|433592400|ref|YP_007281896.1| - 0.00022 21.6 0.0 0.47 10.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|433592400|ref|YP_007281896.1| - 0.00027 20.5 0.0 0.00087 18.8 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|433592400|ref|YP_007281896.1| - 0.00048 20.3 0.0 0.8 9.8 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 gi|433592400|ref|YP_007281896.1| - 0.001 19.3 0.0 0.011 16.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|433592400|ref|YP_007281896.1| - 0.0022 17.8 0.0 0.17 11.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_PrkA PF08298.11 gi|433592400|ref|YP_007281896.1| - 0.01 14.8 0.0 0.27 10.1 0.0 2.2 2 0 0 2 2 2 0 PrkA AAA domain PhoH PF02562.16 gi|433592400|ref|YP_007281896.1| - 0.011 15.2 0.0 0.024 14.1 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.6 gi|433592400|ref|YP_007281896.1| - 0.013 15.6 0.1 0.053 13.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|433592400|ref|YP_007281896.1| - 0.014 14.6 0.0 0.028 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|433592400|ref|YP_007281896.1| - 0.028 14.1 0.0 0.065 13.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|433592400|ref|YP_007281896.1| - 0.035 14.6 0.0 0.12 12.8 0.0 1.9 2 0 0 2 2 2 0 ABC transporter NACHT PF05729.12 gi|433592400|ref|YP_007281896.1| - 0.058 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AgrB PF04647.15 gi|433592400|ref|YP_007281896.1| - 0.058 12.7 0.2 0.091 12.1 0.2 1.2 1 0 0 1 1 1 0 Accessory gene regulator B MCM_lid PF17855.1 gi|433592400|ref|YP_007281896.1| - 0.07 13.6 0.3 0.27 11.7 0.1 2.0 1 1 1 2 2 2 0 MCM AAA-lid domain AAA_10 PF12846.7 gi|433592400|ref|YP_007281896.1| - 0.073 12.0 0.0 0.19 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain TrwB_AAD_bind PF10412.9 gi|433592400|ref|YP_007281896.1| - 0.074 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain CTP_transf_like PF01467.26 gi|433592401|ref|YP_007281897.1| - 4e-15 56.2 0.0 1.3e-14 54.6 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 gi|433592401|ref|YP_007281897.1| - 0.01 15.6 0.0 0.04 13.6 0.0 1.9 1 1 1 2 2 2 0 Citrate lyase ligase C-terminal domain HIGH_NTase1 PF05636.11 gi|433592401|ref|YP_007281897.1| - 0.091 12.0 0.0 0.18 11.0 0.0 1.4 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase SAM_adeno_trans PF01887.16 gi|433592402|ref|YP_007281898.1| - 1.6e-75 253.6 0.0 1.8e-75 253.4 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase HalOD1 PF18545.1 gi|433592403|ref|YP_007281899.1| - 5e-23 81.2 0.1 6.6e-23 80.8 0.1 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 Cpn60_TCP1 PF00118.24 gi|433592404|ref|YP_007281900.1| - 6.8e-145 483.4 12.8 7.6e-145 483.3 12.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Amidohydro_2 PF04909.14 gi|433592405|ref|YP_007281901.1| - 7.3e-08 32.5 0.0 1.9e-07 31.2 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase GntP_permease PF02447.16 gi|433592406|ref|YP_007281902.1| - 2.1e-99 333.2 34.9 2.5e-99 332.9 34.9 1.0 1 0 0 1 1 1 1 GntP family permease DUF4499 PF14934.6 gi|433592406|ref|YP_007281902.1| - 0.045 14.1 1.3 0.13 12.6 1.3 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4499) Bac_export_2 PF01312.19 gi|433592406|ref|YP_007281902.1| - 2.5 7.2 0.0 2.5 7.2 0.0 2.9 3 1 0 3 3 3 0 FlhB HrpN YscU SpaS Family DUF4147 PF13660.6 gi|433592407|ref|YP_007281903.1| - 1.5e-75 253.7 5.1 2.3e-75 253.1 5.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|433592407|ref|YP_007281903.1| - 6.5e-33 113.2 3.5 2.1e-32 111.6 3.5 1.9 1 0 0 1 1 1 1 MOFRL family TPR_9 PF13371.6 gi|433592407|ref|YP_007281903.1| - 1.6 8.9 6.0 1.2 9.4 0.1 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF5518 PF17647.1 gi|433592408|ref|YP_007281904.1| - 2.2e-19 69.8 20.8 2.5e-19 69.6 20.8 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) AICARFT_IMPCHas PF01808.18 gi|433592409|ref|YP_007281905.1| - 6.1e-84 282.0 0.0 8.1e-84 281.6 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.19 gi|433592409|ref|YP_007281905.1| - 4.2e-34 117.9 0.0 2.1e-32 112.3 0.0 2.5 2 1 0 2 2 2 1 Formyl transferase Lyase_1 PF00206.20 gi|433592410|ref|YP_007281906.1| - 8.1e-50 170.0 0.0 1.1e-49 169.5 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|433592410|ref|YP_007281906.1| - 7.1e-42 142.1 0.0 1.2e-41 141.4 0.0 1.4 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal ScsC_N PF18312.1 gi|433592410|ref|YP_007281906.1| - 0.076 12.8 0.2 0.19 11.6 0.2 1.7 1 0 0 1 1 1 0 Copper resistance protein ScsC N-terminal domain EamA PF00892.20 gi|433592411|ref|YP_007281907.1| - 5.4e-10 39.6 16.1 5.9e-10 39.4 16.1 1.0 1 0 0 1 1 1 1 EamA-like transporter family BRI3BP PF14965.6 gi|433592411|ref|YP_007281907.1| - 0.046 13.2 3.2 0.06 12.9 3.2 1.2 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Tlr3_TMD PF17968.1 gi|433592411|ref|YP_007281907.1| - 2.2 8.5 4.9 15 5.8 2.7 2.6 2 0 0 2 2 2 0 Toll-like receptor 3 trans-membrane domain ABC2_membrane_5 PF13346.6 gi|433592411|ref|YP_007281907.1| - 2.5 7.6 9.6 0.43 10.1 5.6 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein Chloroplast_duf PF14476.6 gi|433592411|ref|YP_007281907.1| - 5.5 5.9 7.7 0.49 9.3 0.5 2.0 2 0 0 2 2 2 0 Petal formation-expressed EamA PF00892.20 gi|433592412|ref|YP_007281908.1| - 7.7e-08 32.6 13.5 1.1e-07 32.1 13.5 1.3 1 1 0 1 1 1 1 EamA-like transporter family Sugar_transport PF06800.12 gi|433592412|ref|YP_007281908.1| - 0.00085 18.7 1.7 0.00093 18.6 1.7 1.0 1 0 0 1 1 1 1 Sugar transport protein DUF3040 PF11239.8 gi|433592413|ref|YP_007281909.1| - 0.57 10.5 8.8 1.3 9.3 4.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Peptidase_M20 PF01546.28 gi|433592414|ref|YP_007281910.1| - 3.9e-23 82.2 0.0 9.9e-23 80.9 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|433592414|ref|YP_007281910.1| - 1.8e-15 56.7 0.2 3.2e-15 56.0 0.2 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|433592414|ref|YP_007281910.1| - 0.061 13.0 0.1 0.1 12.3 0.1 1.4 1 0 0 1 1 1 0 Peptidase family M28 DAP_epimerase PF01678.19 gi|433592415|ref|YP_007281911.1| - 3.7e-38 130.4 0.5 1.5e-19 70.3 0.2 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase Orn_Arg_deC_N PF02784.16 gi|433592416|ref|YP_007281912.1| - 6.5e-46 156.7 0.0 8.2e-46 156.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|433592416|ref|YP_007281912.1| - 3.7e-24 84.8 0.0 4.3e-24 84.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|433592416|ref|YP_007281912.1| - 1.3e-08 34.8 0.2 2.3e-08 34.0 0.2 1.4 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Radical_SAM PF04055.21 gi|433592416|ref|YP_007281912.1| - 0.16 12.3 0.0 0.3 11.5 0.0 1.6 1 0 0 1 1 1 0 Radical SAM superfamily PIN PF01850.21 gi|433592417|ref|YP_007281913.1| - 2.8e-09 37.5 5.5 3.3e-09 37.3 5.5 1.1 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|433592418|ref|YP_007281914.1| - 0.013 15.4 0.8 0.03 14.2 0.8 1.6 1 1 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin THDPS_N_2 PF14805.6 gi|433592419|ref|YP_007281915.1| - 6.1e-24 84.0 1.1 9.9e-24 83.4 1.1 1.4 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 gi|433592419|ref|YP_007281915.1| - 3.2e-11 42.5 9.1 0.00026 20.6 0.4 3.5 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|433592419|ref|YP_007281915.1| - 1.6e-06 27.7 12.7 1.8e-05 24.3 0.9 3.3 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.14 gi|433592420|ref|YP_007281916.1| - 3.6e-37 127.1 0.0 4.9e-37 126.6 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|433592420|ref|YP_007281916.1| - 5.4e-25 87.9 0.0 1.1e-24 87.0 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus RmlD_sub_bind PF04321.17 gi|433592420|ref|YP_007281916.1| - 0.0064 15.6 0.1 0.013 14.6 0.1 1.5 1 0 0 1 1 1 1 RmlD substrate binding domain Sacchrp_dh_NADP PF03435.18 gi|433592420|ref|YP_007281916.1| - 0.0095 16.2 0.4 0.041 14.2 0.1 2.2 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|433592420|ref|YP_007281916.1| - 0.019 14.5 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family GFO_IDH_MocA PF01408.22 gi|433592420|ref|YP_007281916.1| - 0.023 15.5 0.0 0.046 14.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.26 gi|433592420|ref|YP_007281916.1| - 0.088 12.8 0.2 0.19 11.7 0.2 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Semialdhyde_dh PF01118.24 gi|433592420|ref|YP_007281916.1| - 0.11 12.9 0.1 0.24 11.8 0.0 1.6 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|433592420|ref|YP_007281916.1| - 0.16 11.4 2.0 0.34 10.3 0.0 2.2 3 0 0 3 3 3 0 NAD dependent epimerase/dehydratase family DHDPS PF00701.22 gi|433592421|ref|YP_007281917.1| - 7.5e-94 313.7 0.0 8.5e-94 313.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.14 gi|433592421|ref|YP_007281917.1| - 0.012 14.9 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG Peptidase_M48 PF01435.18 gi|433592422|ref|YP_007281918.1| - 9.8e-39 133.2 0.0 1.4e-38 132.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|433592422|ref|YP_007281918.1| - 1.3e-07 31.2 0.0 2.8e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|433592422|ref|YP_007281918.1| - 0.012 15.4 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Tetraspanin PF00335.20 gi|433592422|ref|YP_007281918.1| - 0.16 11.6 0.9 9.6 5.8 0.2 2.1 2 0 0 2 2 2 0 Tetraspanin family BSP PF04450.12 gi|433592422|ref|YP_007281918.1| - 0.21 11.3 0.0 0.3 10.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria Phage_holin_3_6 PF07332.11 gi|433592422|ref|YP_007281918.1| - 8.5 6.5 9.9 2.3 8.3 2.1 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|433592422|ref|YP_007281918.1| - 8.8 5.0 5.2 6.2 5.5 0.6 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) NYN PF01936.18 gi|433592423|ref|YP_007281919.1| - 1e-38 133.1 0.2 1.2e-38 132.9 0.2 1.0 1 0 0 1 1 1 1 NYN domain CD20 PF04103.15 gi|433592424|ref|YP_007281920.1| - 0.08 13.0 3.7 0.12 12.5 3.7 1.2 1 0 0 1 1 1 0 CD20-like family DUF872 PF05915.12 gi|433592424|ref|YP_007281920.1| - 0.16 12.2 1.6 0.2 11.8 1.6 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF373 PF04123.13 gi|433592424|ref|YP_007281920.1| - 0.26 10.7 3.4 0.28 10.6 3.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF2892 PF11127.8 gi|433592424|ref|YP_007281920.1| - 0.83 9.7 8.0 1.3 9.2 8.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF3098 PF11297.8 gi|433592424|ref|YP_007281920.1| - 2.9 7.6 6.4 11 5.7 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3098) TGT_C2 PF14810.6 gi|433592425|ref|YP_007281921.1| - 1.6e-24 85.8 0.1 3.1e-24 84.9 0.1 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|433592425|ref|YP_007281921.1| - 6.1e-19 67.8 0.5 1e-18 67.1 0.5 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|433592425|ref|YP_007281921.1| - 0.015 15.5 0.0 0.027 14.7 0.0 1.5 1 1 0 1 1 1 0 UPF0113 PUA domain PUA_3 PF17785.1 gi|433592425|ref|YP_007281921.1| - 0.096 12.5 0.1 0.31 10.9 0.1 1.9 1 1 1 2 2 2 0 PUA-like domain HD_3 PF13023.6 gi|433592426|ref|YP_007281922.1| - 4.2e-31 108.1 0.2 5.6e-31 107.7 0.2 1.2 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|433592426|ref|YP_007281922.1| - 1.8e-12 47.4 0.1 8.3e-12 45.2 0.0 1.9 1 1 1 2 2 2 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|433592426|ref|YP_007281922.1| - 3.8e-08 33.6 0.3 9.2e-08 32.3 0.3 1.7 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 gi|433592426|ref|YP_007281922.1| - 0.03 13.8 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 HDOD domain adh_short PF00106.25 gi|433592427|ref|YP_007281923.1| - 1.6e-32 112.5 0.1 2.3e-32 112.1 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|433592427|ref|YP_007281923.1| - 1.2e-26 93.7 0.1 1.6e-26 93.3 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|433592427|ref|YP_007281923.1| - 6.7e-12 45.7 0.4 9.2e-12 45.2 0.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433592427|ref|YP_007281923.1| - 0.0012 18.4 0.2 0.0016 17.9 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|433592427|ref|YP_007281923.1| - 0.027 13.5 0.2 0.036 13.1 0.2 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|433592427|ref|YP_007281923.1| - 0.044 12.9 2.0 0.092 11.8 2.0 1.5 1 1 0 1 1 1 0 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|433592427|ref|YP_007281923.1| - 0.12 11.7 0.1 0.16 11.3 0.1 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase RHIM PF12721.7 gi|433592427|ref|YP_007281923.1| - 0.17 12.4 0.1 0.37 11.3 0.1 1.5 1 0 0 1 1 1 0 RIP homotypic interaction motif NAC PF01849.18 gi|433592428|ref|YP_007281924.1| - 1.2e-15 57.2 0.2 1.7e-15 56.7 0.2 1.2 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|433592428|ref|YP_007281924.1| - 0.00094 18.9 0.4 0.0022 17.7 0.4 1.6 1 0 0 1 1 1 1 UBA-like domain HOIP-UBA PF16678.5 gi|433592428|ref|YP_007281924.1| - 0.057 13.4 0.7 0.098 12.7 0.7 1.6 1 1 0 1 1 1 0 HOIP UBA domain pair UBA PF00627.31 gi|433592428|ref|YP_007281924.1| - 0.086 12.8 0.6 0.086 12.8 0.6 1.9 2 0 0 2 2 2 0 UBA/TS-N domain LptC PF06835.13 gi|433592428|ref|YP_007281924.1| - 0.15 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide-assembly, LptC-related GCD14 PF08704.10 gi|433592429|ref|YP_007281925.1| - 3.1e-13 50.0 0.0 1.3e-10 41.4 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|433592429|ref|YP_007281925.1| - 1.2e-08 34.9 0.0 1.6e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433592429|ref|YP_007281925.1| - 1.3e-07 32.2 0.4 2.3e-07 31.4 0.4 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433592429|ref|YP_007281925.1| - 1.6e-06 28.7 0.2 2.9e-06 27.8 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|433592429|ref|YP_007281925.1| - 3.4e-06 26.7 0.2 1.1e-05 25.1 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|433592429|ref|YP_007281925.1| - 2.3e-05 23.9 0.3 2.9e-05 23.6 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|433592429|ref|YP_007281925.1| - 0.00011 22.1 0.0 0.00026 20.9 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|433592429|ref|YP_007281925.1| - 0.00015 22.8 0.2 0.00033 21.6 0.2 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|433592429|ref|YP_007281925.1| - 0.00018 21.3 0.1 0.00024 20.9 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|433592429|ref|YP_007281925.1| - 0.0052 16.4 0.1 0.0085 15.7 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW ADH_zinc_N PF00107.26 gi|433592429|ref|YP_007281925.1| - 0.0056 16.7 0.4 0.0086 16.1 0.4 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase RrnaAD PF00398.20 gi|433592429|ref|YP_007281925.1| - 0.0071 15.4 0.0 0.0099 15.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.17 gi|433592429|ref|YP_007281925.1| - 0.014 14.6 0.0 0.017 14.3 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase Cons_hypoth95 PF03602.15 gi|433592429|ref|YP_007281925.1| - 0.019 14.6 0.1 0.03 14.0 0.1 1.4 1 1 0 1 1 1 0 Conserved hypothetical protein 95 DUF726 PF05277.12 gi|433592429|ref|YP_007281925.1| - 0.02 13.9 0.2 0.029 13.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Methyltransf_12 PF08242.12 gi|433592429|ref|YP_007281925.1| - 0.029 15.1 0.1 0.06 14.1 0.1 1.6 1 1 0 1 1 1 0 Methyltransferase domain Meth_synt_2 PF01717.18 gi|433592429|ref|YP_007281925.1| - 0.048 12.9 0.1 0.068 12.4 0.1 1.2 1 0 0 1 1 1 0 Cobalamin-independent synthase, Catalytic domain CMAS PF02353.20 gi|433592429|ref|YP_007281925.1| - 0.054 12.8 0.0 0.066 12.5 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|433592429|ref|YP_007281925.1| - 0.097 12.2 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|433592429|ref|YP_007281925.1| - 0.14 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain TFIIS_C PF01096.18 gi|433592430|ref|YP_007281926.1| - 1.3e-18 66.5 4.2 1.3e-18 66.5 4.2 2.9 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|433592430|ref|YP_007281926.1| - 4.1e-08 33.0 12.3 4.6e-08 32.8 1.3 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|433592430|ref|YP_007281926.1| - 1.1e-05 25.2 5.0 0.0048 16.8 0.6 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.7 gi|433592430|ref|YP_007281926.1| - 0.00011 22.1 8.4 0.015 15.3 0.5 2.8 2 1 0 2 2 2 2 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|433592430|ref|YP_007281926.1| - 0.00024 20.6 10.9 0.0027 17.2 1.4 3.7 3 1 0 3 3 3 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|433592430|ref|YP_007281926.1| - 0.00064 19.6 9.7 0.053 13.5 0.8 2.4 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|433592430|ref|YP_007281926.1| - 0.0042 16.5 12.1 0.11 11.9 0.2 3.8 3 1 0 3 3 3 1 zinc-ribbon domain FdhE PF04216.12 gi|433592430|ref|YP_007281926.1| - 0.0069 16.3 1.2 0.012 15.6 0.1 1.8 2 0 0 2 2 2 1 Protein involved in formate dehydrogenase formation Ribosomal_L37ae PF01780.19 gi|433592430|ref|YP_007281926.1| - 0.0084 16.2 2.4 0.068 13.3 0.0 2.5 2 1 0 2 2 2 1 Ribosomal L37ae protein family DUF2387 PF09526.10 gi|433592430|ref|YP_007281926.1| - 0.0092 16.1 7.9 0.69 10.1 2.3 2.3 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) Rubredoxin_2 PF18073.1 gi|433592430|ref|YP_007281926.1| - 0.047 13.4 12.4 1.9 8.3 0.3 4.0 4 0 0 4 4 4 0 Rubredoxin metal binding domain ArfGap PF01412.18 gi|433592430|ref|YP_007281926.1| - 0.072 13.2 0.4 0.072 13.2 0.4 2.0 2 1 0 2 2 2 0 Putative GTPase activating protein for Arf PhnA_Zn_Ribbon PF08274.12 gi|433592430|ref|YP_007281926.1| - 0.072 13.1 12.4 1.9 8.5 0.3 4.0 4 0 0 4 4 4 0 PhnA Zinc-Ribbon zf-UBR PF02207.20 gi|433592430|ref|YP_007281926.1| - 0.1 12.8 3.8 0.73 10.0 3.8 2.3 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) TackOD1 PF18551.1 gi|433592430|ref|YP_007281926.1| - 0.11 12.1 5.4 0.23 11.1 0.1 2.6 2 1 0 2 2 2 0 Thaumarchaeal output domain 1 DUF3797 PF12677.7 gi|433592430|ref|YP_007281926.1| - 0.11 12.4 0.6 0.11 12.4 0.6 2.5 2 2 1 3 3 1 0 Domain of unknown function (DUF3797) Prok-RING_1 PF14446.6 gi|433592430|ref|YP_007281926.1| - 0.13 12.2 6.9 1.9 8.5 0.7 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.6 gi|433592430|ref|YP_007281926.1| - 0.15 12.0 11.5 4.2 7.4 2.3 3.9 3 1 0 3 3 3 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|433592430|ref|YP_007281926.1| - 0.19 11.5 13.0 0.54 10.0 0.1 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|433592430|ref|YP_007281926.1| - 0.25 11.1 12.5 9.6 6.0 0.1 4.2 3 1 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-RRPl_C4 PF17026.5 gi|433592430|ref|YP_007281926.1| - 0.3 11.2 2.5 1.3 9.1 2.5 1.9 1 1 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type DUF3268 PF11672.8 gi|433592430|ref|YP_007281926.1| - 0.31 11.4 0.3 0.31 11.4 0.3 2.0 2 1 0 2 2 2 0 zinc-finger-containing domain zf-UBP PF02148.19 gi|433592430|ref|YP_007281926.1| - 0.45 10.9 5.8 2.3 8.6 0.3 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein HypA PF01155.19 gi|433592430|ref|YP_007281926.1| - 0.52 10.4 9.1 4.1 7.5 0.8 3.0 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-IS66 PF13005.7 gi|433592430|ref|YP_007281926.1| - 0.56 10.7 6.7 10 6.6 0.0 3.8 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.10 gi|433592430|ref|YP_007281926.1| - 0.57 10.3 11.4 1.4 9.1 0.1 3.8 3 1 0 3 3 3 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|433592430|ref|YP_007281926.1| - 0.7 9.5 11.4 1.2 8.8 0.2 3.7 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc-ribbons_6 PF07191.12 gi|433592430|ref|YP_007281926.1| - 0.72 9.9 9.4 5.1 7.1 0.5 2.7 2 1 0 2 2 2 0 zinc-ribbons zf-C4pol PF14260.6 gi|433592430|ref|YP_007281926.1| - 0.77 10.3 7.0 11 6.6 7.3 2.5 1 1 0 1 1 1 0 C4-type zinc-finger of DNA polymerase delta Rdx PF10262.9 gi|433592430|ref|YP_007281926.1| - 0.84 9.9 3.3 37 4.6 0.0 3.2 3 1 1 4 4 4 0 Rdx family HalOD2 PF18547.1 gi|433592430|ref|YP_007281926.1| - 0.97 9.4 12.2 1.5 8.8 0.2 3.9 3 1 1 4 4 4 0 Halobacterial output domain 2 DNA_RNApol_7kD PF03604.13 gi|433592430|ref|YP_007281926.1| - 1.9 8.2 10.3 23 4.7 0.1 4.0 4 0 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_7 PF02591.15 gi|433592430|ref|YP_007281926.1| - 2 8.7 10.1 6.1 7.1 0.1 3.7 4 0 0 4 4 4 0 C4-type zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|433592430|ref|YP_007281926.1| - 2.7 7.8 13.8 18 5.2 0.1 4.1 3 1 1 4 4 4 0 A2L zinc ribbon domain Ribosomal_S27 PF01599.19 gi|433592430|ref|YP_007281926.1| - 2.9 8.1 6.4 4.3 7.6 2.5 2.5 2 0 0 2 2 2 0 Ribosomal protein S27a zf-ACC PF17848.1 gi|433592430|ref|YP_007281926.1| - 3.4 7.8 13.5 4.2 7.5 0.3 4.0 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-B_box PF00643.24 gi|433592430|ref|YP_007281926.1| - 3.9 7.7 8.2 16 5.7 0.1 3.6 4 0 0 4 4 4 0 B-box zinc finger zinc_ribbon_15 PF17032.5 gi|433592430|ref|YP_007281926.1| - 7 7.5 9.6 10 7.0 0.4 3.0 1 1 2 3 3 3 0 zinc-ribbon family HemY_N PF07219.13 gi|433592431|ref|YP_007281927.1| - 0.23 11.7 2.4 0.75 10.0 0.0 2.3 2 1 0 2 2 2 0 HemY protein N-terminus DUF4051 PF13260.6 gi|433592431|ref|YP_007281927.1| - 0.34 10.7 0.0 0.34 10.7 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4051) MFS_1 PF07690.16 gi|433592433|ref|YP_007281929.1| - 7.7e-47 159.9 51.4 1.4e-23 83.4 23.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|433592433|ref|YP_007281929.1| - 2.9e-07 29.7 25.9 8e-06 25.0 6.9 3.3 2 2 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|433592433|ref|YP_007281929.1| - 2.6e-06 26.6 10.5 2.5e-05 23.3 10.5 2.4 1 1 0 1 1 1 1 MFS_1 like family LacY_symp PF01306.19 gi|433592433|ref|YP_007281929.1| - 0.056 12.2 7.9 0.035 12.9 2.1 2.2 2 0 0 2 2 2 0 LacY proton/sugar symporter EHN PF06441.12 gi|433592434|ref|YP_007281930.1| - 1.9e-35 121.5 0.0 3.6e-35 120.6 0.0 1.5 1 0 0 1 1 1 1 Epoxide hydrolase N terminus Abhydrolase_1 PF00561.20 gi|433592434|ref|YP_007281930.1| - 1.3e-14 54.5 0.1 2.1e-14 53.8 0.1 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433592434|ref|YP_007281930.1| - 3.8e-08 34.2 11.3 3.8e-08 34.2 11.3 1.9 2 0 0 2 2 2 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433592434|ref|YP_007281930.1| - 0.12 11.6 0.1 0.31 10.3 0.1 1.6 1 0 0 1 1 1 0 Serine aminopeptidase, S33 PqqD PF05402.12 gi|433592435|ref|YP_007281931.1| - 0.0034 17.7 0.0 0.008 16.5 0.0 1.8 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) PH_17 PF18012.1 gi|433592436|ref|YP_007281932.1| - 0.061 13.0 0.0 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 PH domain NUDIX PF00293.28 gi|433592437|ref|YP_007281933.1| - 2.2e-18 66.5 0.5 2.8e-18 66.2 0.5 1.1 1 0 0 1 1 1 1 NUDIX domain AAA_17 PF13207.6 gi|433592437|ref|YP_007281933.1| - 0.059 13.8 0.1 0.089 13.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain Ribosomal_S10 PF00338.22 gi|433592438|ref|YP_007281934.1| - 4.6e-15 55.6 0.0 5.2e-15 55.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Glyco_hydro_38C PF07748.13 gi|433592438|ref|YP_007281934.1| - 0.14 12.2 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 38 C-terminal domain Peptidase_M20 PF01546.28 gi|433592439|ref|YP_007281935.1| - 2.8e-21 76.2 6.2 1.1e-20 74.3 6.2 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|433592439|ref|YP_007281935.1| - 2.5e-12 46.7 0.4 1.1e-11 44.6 0.4 2.0 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M48 PF01435.18 gi|433592440|ref|YP_007281936.1| - 1.2e-26 93.7 0.1 4.4e-26 91.9 0.0 2.0 2 1 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|433592440|ref|YP_007281936.1| - 1e-06 28.2 0.0 9e-05 21.8 0.0 2.4 2 0 0 2 2 2 2 BlaR1 peptidase M56 SprT-like PF10263.9 gi|433592440|ref|YP_007281936.1| - 0.0011 18.8 0.0 0.0019 18.0 0.0 1.3 1 0 0 1 1 1 1 SprT-like family DUF3693 PF12472.8 gi|433592440|ref|YP_007281936.1| - 0.047 13.3 1.2 0.18 11.5 0.5 2.3 1 1 1 2 2 2 0 Phage related protein DUF2268 PF10026.9 gi|433592440|ref|YP_007281936.1| - 0.16 11.5 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Peptidase_U4 PF03419.13 gi|433592440|ref|YP_007281936.1| - 3.5 6.8 4.9 6.2 6.0 2.9 2.2 3 0 0 3 3 3 0 Sporulation factor SpoIIGA DUF4397 PF14344.6 gi|433592441|ref|YP_007281937.1| - 6.3e-43 146.4 4.5 4.5e-30 104.9 0.6 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) baeRF_family8 PF18851.1 gi|433592441|ref|YP_007281937.1| - 0.089 12.9 0.1 0.33 11.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 8 Y_Y_Y PF07495.13 gi|433592441|ref|YP_007281937.1| - 0.091 12.7 0.0 2.7 8.0 0.0 2.3 2 0 0 2 2 2 0 Y_Y_Y domain Trp_halogenase PF04820.14 gi|433592442|ref|YP_007281938.1| - 3.3e-13 49.3 0.2 1.4e-09 37.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase DAO PF01266.24 gi|433592442|ref|YP_007281938.1| - 4.2e-11 43.0 4.2 8.4e-06 25.6 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|433592442|ref|YP_007281938.1| - 1.8e-10 40.6 0.5 7e-10 38.7 0.5 1.9 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|433592442|ref|YP_007281938.1| - 1.1e-09 37.9 9.1 1e-05 24.8 2.0 2.5 3 0 0 3 3 3 2 FAD binding domain Pyr_redox PF00070.27 gi|433592442|ref|YP_007281938.1| - 2.5e-08 34.3 5.3 0.00094 19.7 0.3 2.8 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|433592442|ref|YP_007281938.1| - 3.3e-08 33.1 1.4 0.00078 18.8 0.0 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|433592442|ref|YP_007281938.1| - 6.7e-08 32.3 8.0 0.0012 18.3 0.9 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|433592442|ref|YP_007281938.1| - 6e-07 28.9 0.7 1.5e-06 27.6 0.7 1.6 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|433592442|ref|YP_007281938.1| - 1.3e-06 28.6 0.5 1.3e-06 28.6 0.5 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|433592442|ref|YP_007281938.1| - 1.1e-05 24.4 0.3 0.0004 19.2 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.24 gi|433592442|ref|YP_007281938.1| - 6.2e-05 22.5 0.8 0.0026 17.1 0.0 2.4 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Thi4 PF01946.17 gi|433592442|ref|YP_007281938.1| - 8.6e-05 21.9 0.5 0.00094 18.5 0.2 2.6 4 0 0 4 4 4 1 Thi4 family Pyr_redox_3 PF13738.6 gi|433592442|ref|YP_007281938.1| - 0.0023 17.2 0.4 0.032 13.5 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|433592442|ref|YP_007281938.1| - 0.0031 16.6 2.5 0.53 9.3 0.2 2.6 3 0 0 3 3 3 2 Lycopene cyclase protein ApbA PF02558.16 gi|433592442|ref|YP_007281938.1| - 0.012 15.2 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|433592442|ref|YP_007281938.1| - 0.016 15.1 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|433592442|ref|YP_007281938.1| - 0.018 14.4 0.3 0.035 13.4 0.3 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GMC_oxred_N PF00732.19 gi|433592442|ref|YP_007281938.1| - 0.18 11.1 0.0 2 7.7 0.0 2.0 2 0 0 2 2 2 0 GMC oxidoreductase Hydrolase_4 PF12146.8 gi|433592443|ref|YP_007281939.1| - 2.5e-10 40.0 0.6 5.4e-10 38.9 0.6 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|433592443|ref|YP_007281939.1| - 8e-09 35.5 0.1 1.4e-08 34.7 0.1 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|433592443|ref|YP_007281939.1| - 8.3e-07 28.7 0.4 5.7e-06 26.0 0.0 2.3 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|433592443|ref|YP_007281939.1| - 6.3e-06 27.0 12.6 6.3e-06 27.0 12.6 2.1 1 1 1 2 2 2 1 Alpha/beta hydrolase family Esterase PF00756.20 gi|433592443|ref|YP_007281939.1| - 5.2e-05 23.0 0.1 0.00013 21.7 0.0 1.6 2 0 0 2 2 2 1 Putative esterase AXE1 PF05448.12 gi|433592443|ref|YP_007281939.1| - 0.00011 21.0 0.0 0.19 10.4 0.0 2.2 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) BAAT_C PF08840.11 gi|433592443|ref|YP_007281939.1| - 0.00025 21.0 0.0 0.00046 20.2 0.0 1.3 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DUF1100 PF06500.11 gi|433592443|ref|YP_007281939.1| - 0.0095 14.8 0.0 0.016 14.0 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) DUF2974 PF11187.8 gi|433592443|ref|YP_007281939.1| - 0.032 13.8 0.0 0.053 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) DLH PF01738.18 gi|433592443|ref|YP_007281939.1| - 0.033 13.7 0.0 1.8 8.1 0.0 2.4 2 0 0 2 2 2 0 Dienelactone hydrolase family Flu_M2 PF00599.17 gi|433592443|ref|YP_007281939.1| - 0.053 13.6 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Influenza Matrix protein (M2) Fer2 PF00111.27 gi|433592444|ref|YP_007281940.1| - 3.9e-10 39.5 4.3 5e-10 39.2 4.3 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|433592444|ref|YP_007281940.1| - 0.025 14.6 0.3 0.029 14.4 0.3 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Lactamase_B PF00753.27 gi|433592445|ref|YP_007281941.1| - 2.3e-16 60.4 6.7 4.1e-16 59.6 6.7 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|433592445|ref|YP_007281941.1| - 8.8e-08 32.6 0.0 2.3e-07 31.3 0.0 1.8 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|433592445|ref|YP_007281941.1| - 7.6e-05 22.3 2.2 0.00019 21.0 0.8 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Tubulin PF00091.25 gi|433592447|ref|YP_007281943.1| - 4.6e-42 144.5 1.1 6.7e-42 143.9 0.4 1.6 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|433592447|ref|YP_007281943.1| - 3.2e-36 123.5 2.1 3.2e-36 123.5 2.1 2.1 2 0 0 2 2 2 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|433592447|ref|YP_007281943.1| - 0.0018 18.2 2.0 0.0037 17.2 0.1 2.2 3 0 0 3 3 3 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|433592447|ref|YP_007281943.1| - 0.049 12.8 7.9 0.067 12.4 1.7 2.6 1 1 1 2 2 2 0 Tubulin like tRNA_deacylase PF04414.12 gi|433592448|ref|YP_007281944.1| - 8.3e-60 201.8 0.0 1.1e-59 201.5 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF3194 PF11419.8 gi|433592449|ref|YP_007281945.1| - 0.071 13.5 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3194) DDE_Tnp_1 PF01609.21 gi|433592450|ref|YP_007281946.1| - 9.3e-17 61.4 0.0 1.4e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain BAT PF15915.5 gi|433592451|ref|YP_007281947.1| - 7.8e-42 142.8 8.2 7.8e-42 142.8 8.2 3.7 5 0 0 5 5 5 1 GAF and HTH_10 associated domain PAS_4 PF08448.10 gi|433592451|ref|YP_007281947.1| - 1.1e-40 138.2 17.6 1.3e-16 60.8 0.1 5.0 6 1 0 6 6 6 3 PAS fold PAS_9 PF13426.7 gi|433592451|ref|YP_007281947.1| - 2.6e-38 130.4 0.0 7.5e-14 51.9 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|433592451|ref|YP_007281947.1| - 3.1e-35 120.6 1.6 3.6e-13 49.5 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.12 gi|433592451|ref|YP_007281947.1| - 2.6e-31 107.7 0.3 2.8e-11 43.6 0.0 3.6 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.12 gi|433592451|ref|YP_007281947.1| - 4.7e-17 61.5 0.1 1.1e-16 60.4 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|433592451|ref|YP_007281947.1| - 5.9e-12 46.1 1.7 5.9e-12 46.1 1.7 2.3 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|433592451|ref|YP_007281947.1| - 7.1e-10 38.7 2.2 0.00027 20.9 0.0 4.0 4 0 0 4 4 4 2 PAS domain GAF PF01590.26 gi|433592451|ref|YP_007281947.1| - 4.7e-06 27.3 0.1 2.8e-05 24.8 0.0 2.4 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|433592451|ref|YP_007281947.1| - 6e-06 26.6 0.1 1.9e-05 25.0 0.1 1.9 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|433592451|ref|YP_007281947.1| - 1.2e-05 25.5 0.0 0.023 14.8 0.0 3.4 3 0 0 3 3 3 2 PAS fold HTH_20 PF12840.7 gi|433592451|ref|YP_007281947.1| - 0.00087 19.3 0.7 0.0035 17.4 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|433592451|ref|YP_007281947.1| - 0.017 14.6 0.5 0.066 12.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 PAS_11 PF14598.6 gi|433592451|ref|YP_007281947.1| - 0.025 14.7 0.0 0.47 10.6 0.0 2.4 2 0 0 2 2 2 0 PAS domain CodY PF06018.14 gi|433592451|ref|YP_007281947.1| - 0.042 13.4 0.0 0.27 10.7 0.0 2.2 3 0 0 3 3 3 0 CodY GAF-like domain MarR_2 PF12802.7 gi|433592451|ref|YP_007281947.1| - 0.046 13.6 0.0 0.13 12.2 0.0 1.9 1 0 0 1 1 1 0 MarR family SpoVT_C PF15714.5 gi|433592451|ref|YP_007281947.1| - 0.054 13.5 0.0 0.22 11.6 0.0 2.0 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor GerE PF00196.19 gi|433592451|ref|YP_007281947.1| - 0.071 12.7 0.0 0.71 9.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_20 PF12840.7 gi|433592452|ref|YP_007281948.1| - 0.003 17.6 8.0 0.03 14.4 0.4 3.3 2 1 0 2 2 2 2 Helix-turn-helix domain Regulator_TrmB PF11495.8 gi|433592452|ref|YP_007281948.1| - 0.0036 16.5 0.0 0.0055 15.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB Na_Ca_ex PF01699.24 gi|433592453|ref|YP_007281949.1| - 1.5e-48 164.6 35.2 2.6e-26 92.4 13.3 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Shikimate_dh_N PF08501.11 gi|433592454|ref|YP_007281950.1| - 2.8e-26 91.6 0.0 6.9e-26 90.3 0.0 1.7 2 0 0 2 2 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|433592454|ref|YP_007281950.1| - 5.5e-15 54.8 0.7 1.5e-14 53.4 0.7 1.8 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|433592454|ref|YP_007281950.1| - 1.4e-12 47.9 0.1 2.6e-12 47.0 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|433592454|ref|YP_007281950.1| - 2.1e-05 23.9 0.1 4e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|433592454|ref|YP_007281950.1| - 8.8e-05 22.8 1.3 0.00065 20.0 0.9 2.6 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain THF_DHG_CYH_C PF02882.19 gi|433592454|ref|YP_007281950.1| - 9.9e-05 21.7 0.0 0.0018 17.6 0.0 2.1 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain F420_oxidored PF03807.17 gi|433592454|ref|YP_007281950.1| - 0.00052 20.6 0.3 0.00091 19.8 0.3 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.25 gi|433592454|ref|YP_007281950.1| - 0.00068 19.1 1.4 0.0015 18.0 1.5 1.5 1 1 0 1 1 1 1 short chain dehydrogenase IlvN PF07991.12 gi|433592454|ref|YP_007281950.1| - 0.00094 18.8 0.2 0.0016 18.0 0.2 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|433592454|ref|YP_007281950.1| - 0.0059 16.8 0.1 0.0082 16.3 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|433592454|ref|YP_007281950.1| - 0.0066 16.1 0.2 0.011 15.3 0.2 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|433592454|ref|YP_007281950.1| - 0.0094 15.2 0.6 0.015 14.6 0.6 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|433592454|ref|YP_007281950.1| - 0.015 14.4 6.1 0.024 13.7 6.0 1.4 1 1 0 1 1 1 0 FAD binding domain NAD_binding_7 PF13241.6 gi|433592454|ref|YP_007281950.1| - 0.021 15.3 0.1 0.036 14.5 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|433592454|ref|YP_007281950.1| - 0.021 14.1 1.2 0.034 13.4 1.2 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.21 gi|433592454|ref|YP_007281950.1| - 0.021 14.9 0.1 0.033 14.3 0.1 1.2 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GIDA PF01134.22 gi|433592454|ref|YP_007281950.1| - 0.037 13.1 3.0 0.049 12.7 3.0 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A ThiF PF00899.21 gi|433592454|ref|YP_007281950.1| - 0.038 13.4 0.4 0.069 12.5 0.4 1.4 1 0 0 1 1 1 0 ThiF family Pyr_redox_3 PF13738.6 gi|433592454|ref|YP_007281950.1| - 0.04 13.2 0.0 0.056 12.7 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|433592454|ref|YP_007281950.1| - 0.05 13.5 0.3 0.076 12.9 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Malic_M PF03949.15 gi|433592454|ref|YP_007281950.1| - 0.11 11.7 0.2 0.19 11.0 0.2 1.3 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain HHH_5 PF14520.6 gi|433592455|ref|YP_007281951.1| - 4.6e-09 36.7 0.3 8.7e-09 35.9 0.3 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|433592455|ref|YP_007281951.1| - 0.0002 21.6 0.0 0.00097 19.4 0.0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|433592455|ref|YP_007281951.1| - 0.043 14.0 0.0 0.07 13.4 0.0 1.2 1 0 0 1 1 1 0 Pathogenicity locus CDC27 PF09507.10 gi|433592455|ref|YP_007281951.1| - 9.2 5.5 19.8 12 5.2 19.8 1.1 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 Chorismate_bind PF00425.18 gi|433592456|ref|YP_007281952.1| - 5.4e-102 340.8 0.0 9.6e-102 340.0 0.0 1.4 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|433592456|ref|YP_007281952.1| - 9.2e-09 35.6 0.0 6.2e-08 32.9 0.0 2.3 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|433592457|ref|YP_007281953.1| - 1.9e-39 135.4 0.0 5.8e-39 133.8 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|433592457|ref|YP_007281953.1| - 6.6e-09 35.8 0.1 1.7e-08 34.5 0.1 1.8 1 1 0 1 1 1 1 Peptidase C26 HalOD1 PF18545.1 gi|433592458|ref|YP_007281954.1| - 1.2e-13 51.1 0.9 1.5e-13 50.8 0.9 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 A2L_zn_ribbon PF08792.10 gi|433592459|ref|YP_007281955.1| - 0.058 13.1 0.2 0.085 12.6 0.2 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain Aminotran_4 PF01063.19 gi|433592460|ref|YP_007281956.1| - 3.6e-48 164.3 0.0 4.2e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Sacchrp_dh_NADP PF03435.18 gi|433592462|ref|YP_007281958.1| - 1.3e-12 48.1 0.1 3.3e-12 46.8 0.0 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|433592462|ref|YP_007281958.1| - 5.4e-05 23.2 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|433592462|ref|YP_007281958.1| - 0.12 11.8 0.0 0.42 10.0 0.0 1.8 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Rieske PF00355.26 gi|433592463|ref|YP_007281959.1| - 2.4e-06 27.4 0.0 3.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain GbpA_2 PF18416.1 gi|433592463|ref|YP_007281959.1| - 0.18 12.1 0.0 0.29 11.4 0.0 1.3 1 0 0 1 1 1 0 N-acetylglucosamine binding protein domain 2 HTH_20 PF12840.7 gi|433592464|ref|YP_007281960.1| - 0.027 14.5 4.1 3 8.0 3.0 3.0 1 1 1 2 2 2 0 Helix-turn-helix domain ELYS PF13934.6 gi|433592464|ref|YP_007281960.1| - 0.04 13.9 0.1 0.053 13.5 0.1 1.1 1 0 0 1 1 1 0 Nuclear pore complex assembly HTH_20 PF12840.7 gi|433592465|ref|YP_007281961.1| - 0.003 17.6 0.1 0.0052 16.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433592465|ref|YP_007281961.1| - 0.04 13.8 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 MarR family zf-trcl PF13451.6 gi|433592465|ref|YP_007281961.1| - 0.26 11.2 5.8 0.46 10.4 0.4 2.2 1 1 1 2 2 2 0 Probable zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|433592465|ref|YP_007281961.1| - 0.88 9.4 3.1 17 5.3 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain NTP_transferase PF00483.23 gi|433592466|ref|YP_007281962.1| - 1.3e-37 129.7 0.0 1.7e-37 129.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|433592466|ref|YP_007281962.1| - 1.3e-12 48.3 0.0 1.5e-12 48.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|433592466|ref|YP_007281962.1| - 0.033 13.9 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.24 gi|433592466|ref|YP_007281962.1| - 0.04 13.6 0.1 1.5 8.7 0.0 2.7 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) TAT_signal PF10518.9 gi|433592468|ref|YP_007281964.1| - 0.0069 16.2 1.5 0.013 15.3 1.5 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Diphthami_syn_2 PF01902.17 gi|433592469|ref|YP_007281965.1| - 1.1e-58 198.4 0.0 1.6e-58 197.8 0.0 1.3 1 1 0 1 1 1 1 Diphthamide synthase ThiI PF02568.14 gi|433592469|ref|YP_007281965.1| - 0.14 11.7 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) DUF373 PF04123.13 gi|433592470|ref|YP_007281966.1| - 4.8e-115 384.6 7.0 5.9e-115 384.3 7.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) EI24 PF07264.11 gi|433592470|ref|YP_007281966.1| - 0.17 12.1 3.3 0.6 10.3 3.3 1.9 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) PRA1 PF03208.19 gi|433592470|ref|YP_007281966.1| - 6.6 6.4 6.5 0.68 9.6 0.7 2.0 2 0 0 2 2 2 0 PRA1 family protein Peptidase_S49 PF01343.18 gi|433592471|ref|YP_007281967.1| - 5.3e-40 136.9 0.0 5.9e-39 133.5 0.0 2.0 2 0 0 2 2 2 1 Peptidase family S49 SDH_sah PF01972.16 gi|433592471|ref|YP_007281967.1| - 0.03 13.3 0.0 0.045 12.7 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase TauE PF01925.19 gi|433592473|ref|YP_007281969.1| - 4.5e-05 23.2 5.7 5e-05 23.1 5.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DDE_Tnp_1 PF01609.21 gi|433592474|ref|YP_007281970.1| - 3.2e-10 40.0 3.3 4.9e-10 39.4 3.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433592474|ref|YP_007281970.1| - 0.17 11.9 0.5 0.48 10.5 0.3 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) YtxH PF12732.7 gi|433592475|ref|YP_007281971.1| - 0.13 12.8 34.6 12 6.5 3.3 5.2 1 1 1 2 2 2 0 YtxH-like protein DUF1771 PF08590.10 gi|433592475|ref|YP_007281971.1| - 1.5 9.3 35.8 12 6.4 11.1 5.1 3 2 2 5 5 5 0 Domain of unknown function (DUF1771) Amino_oxidase PF01593.24 gi|433592475|ref|YP_007281971.1| - 3.4 6.9 10.4 0.1 11.9 1.9 1.9 1 1 1 2 2 2 0 Flavin containing amine oxidoreductase DUF948 PF06103.11 gi|433592475|ref|YP_007281971.1| - 9.8 6.5 17.2 9.7 6.5 1.7 3.8 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Glyco_hydro_2 PF00703.21 gi|433592476|ref|YP_007281972.1| - 4.8e-06 27.2 0.0 1.1e-05 26.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 Tubulin PF00091.25 gi|433592477|ref|YP_007281973.1| - 3e-25 89.6 0.1 7.2e-25 88.3 0.1 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|433592477|ref|YP_007281973.1| - 1e-06 28.2 0.9 2.6e-06 26.9 0.1 1.9 2 0 0 2 2 2 1 Tubulin like Oxidored_molyb PF00174.19 gi|433592479|ref|YP_007281975.1| - 2.8e-46 157.3 0.1 4.3e-46 156.7 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.16 gi|433592479|ref|YP_007281975.1| - 4.5e-09 36.4 0.2 1.2e-08 35.1 0.2 1.7 1 1 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain Big_7 PF17957.1 gi|433592479|ref|YP_007281975.1| - 0.00037 21.2 0.1 0.00086 20.0 0.1 1.6 1 0 0 1 1 1 1 Bacterial Ig domain NAD_binding_10 PF13460.6 gi|433592480|ref|YP_007281976.1| - 7.2e-14 52.1 0.0 9.3e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|433592480|ref|YP_007281976.1| - 2e-13 50.4 0.0 2.7e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|433592480|ref|YP_007281976.1| - 1.7e-07 30.5 0.0 2.3e-06 26.8 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 gi|433592480|ref|YP_007281976.1| - 1.9e-07 31.4 0.2 3.4e-07 30.5 0.2 1.4 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.17 gi|433592480|ref|YP_007281976.1| - 8.2e-05 23.1 0.2 0.00023 21.7 0.1 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DUF1731 PF08338.11 gi|433592480|ref|YP_007281976.1| - 0.00017 21.4 0.0 0.00067 19.4 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1731) ApbA PF02558.16 gi|433592480|ref|YP_007281976.1| - 0.00062 19.4 0.1 0.001 18.7 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|433592480|ref|YP_007281976.1| - 0.00086 18.9 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RmlD_sub_bind PF04321.17 gi|433592480|ref|YP_007281976.1| - 0.0046 16.1 0.0 0.0099 15.0 0.0 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|433592480|ref|YP_007281976.1| - 0.011 15.1 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase NAD_binding_2 PF03446.15 gi|433592480|ref|YP_007281976.1| - 0.045 13.9 0.0 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|433592480|ref|YP_007281976.1| - 0.15 11.4 0.0 0.32 10.3 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DHHA1 PF02272.19 gi|433592481|ref|YP_007281977.1| - 4.1e-12 46.7 0.2 7.3e-12 45.9 0.2 1.3 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|433592481|ref|YP_007281977.1| - 5e-11 42.7 0.1 8e-11 42.1 0.1 1.3 1 0 0 1 1 1 1 DHH family PfkB PF00294.24 gi|433592482|ref|YP_007281978.1| - 1.7e-12 47.2 3.0 1.7e-10 40.7 2.2 2.3 2 1 0 2 2 2 2 pfkB family carbohydrate kinase STAS_2 PF13466.6 gi|433592482|ref|YP_007281978.1| - 0.00026 21.3 0.9 0.00091 19.5 0.1 2.4 2 0 0 2 2 2 1 STAS domain HalOD1 PF18545.1 gi|433592482|ref|YP_007281978.1| - 0.024 14.9 1.0 0.097 12.9 1.0 2.1 1 1 0 1 1 1 0 Halobacterial output domain 1 Phos_pyr_kin PF08543.12 gi|433592482|ref|YP_007281978.1| - 0.068 12.5 0.0 0.094 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase PhnA_Zn_Ribbon PF08274.12 gi|433592483|ref|YP_007281979.1| - 0.0011 18.8 1.6 0.015 15.2 0.2 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon DZR PF12773.7 gi|433592483|ref|YP_007281979.1| - 0.017 15.1 0.4 0.023 14.7 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon FYVE PF01363.21 gi|433592483|ref|YP_007281979.1| - 0.022 14.9 0.2 0.028 14.5 0.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger zinc-ribbons_6 PF07191.12 gi|433592483|ref|YP_007281979.1| - 0.022 14.7 1.2 0.057 13.4 1.2 1.6 1 1 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|433592483|ref|YP_007281979.1| - 0.42 10.6 4.6 0.48 10.4 0.3 2.2 1 1 2 3 3 3 0 Nudix N-terminal NUDIX PF00293.28 gi|433592486|ref|YP_007281982.1| - 2.6e-14 53.4 0.1 3.4e-14 53.0 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain DNA_binding_1 PF01035.20 gi|433592487|ref|YP_007281983.1| - 3e-06 27.3 0.0 5.1e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Pacs-1 PF10254.9 gi|433592487|ref|YP_007281983.1| - 0.027 13.4 0.0 0.031 13.3 0.0 1.0 1 0 0 1 1 1 0 PACS-1 cytosolic sorting protein zf-ISL3 PF14690.6 gi|433592488|ref|YP_007281984.1| - 0.0037 17.9 0.4 1 10.1 0.0 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf_UBZ PF18439.1 gi|433592488|ref|YP_007281984.1| - 0.0096 15.5 1.8 0.71 9.5 0.1 2.3 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger Nudix_N_2 PF14803.6 gi|433592488|ref|YP_007281984.1| - 0.01 15.8 3.3 1.8 8.6 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|433592488|ref|YP_007281984.1| - 0.016 14.9 2.8 1.7 8.4 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|433592488|ref|YP_007281984.1| - 0.026 14.3 1.2 0.34 10.7 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain YhfH PF14149.6 gi|433592488|ref|YP_007281984.1| - 0.035 14.1 3.4 0.56 10.2 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-IS66 PF13005.7 gi|433592488|ref|YP_007281984.1| - 0.042 14.3 1.8 6.5 7.3 0.2 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Ima1_N PF09779.9 gi|433592488|ref|YP_007281984.1| - 0.046 14.6 0.6 0.74 10.7 0.2 2.0 1 1 1 2 2 2 0 Ima1 N-terminal domain Ogr_Delta PF04606.12 gi|433592488|ref|YP_007281984.1| - 0.047 13.7 0.4 2.6 8.1 0.0 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger CpXC PF14353.6 gi|433592488|ref|YP_007281984.1| - 0.075 13.1 0.4 3.6 7.7 0.0 2.0 2 0 0 2 2 2 0 CpXC protein HypA PF01155.19 gi|433592488|ref|YP_007281984.1| - 0.077 13.0 0.3 0.1 12.6 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|433592488|ref|YP_007281984.1| - 0.1 12.3 6.9 0.17 11.5 0.6 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|433592488|ref|YP_007281984.1| - 0.13 12.4 5.3 0.84 9.8 4.6 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DUF983 PF06170.12 gi|433592488|ref|YP_007281984.1| - 0.17 12.3 1.5 9.1 6.8 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) OrfB_Zn_ribbon PF07282.11 gi|433592488|ref|YP_007281984.1| - 0.39 10.7 2.8 1.8 8.5 2.8 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|433592488|ref|YP_007281984.1| - 0.97 9.5 5.0 4.3 7.4 5.0 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain IGPS PF00218.21 gi|433592489|ref|YP_007281985.1| - 1e-63 214.9 0.0 3e-62 210.1 0.0 2.0 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|433592489|ref|YP_007281985.1| - 0.00035 20.1 0.0 0.0095 15.4 0.0 2.5 2 1 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|433592489|ref|YP_007281985.1| - 0.00099 18.2 0.7 0.0047 16.0 0.5 1.8 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.14 gi|433592489|ref|YP_007281985.1| - 0.0013 18.0 1.2 0.015 14.5 0.0 2.8 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|433592489|ref|YP_007281985.1| - 0.047 13.0 4.1 0.092 12.0 0.2 2.5 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG QRPTase_C PF01729.19 gi|433592489|ref|YP_007281985.1| - 0.047 13.5 0.3 0.19 11.5 0.1 2.1 2 1 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Flp1_like PF16982.5 gi|433592489|ref|YP_007281985.1| - 0.06 12.8 0.5 0.11 11.9 0.5 1.4 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain DHO_dh PF01180.21 gi|433592489|ref|YP_007281985.1| - 0.13 11.5 0.1 0.23 10.7 0.1 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase PALP PF00291.25 gi|433592490|ref|YP_007281986.1| - 4.5e-40 137.9 1.1 7.9e-40 137.1 1.1 1.3 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|433592491|ref|YP_007281987.1| - 8.2e-88 293.6 0.0 9.5e-88 293.4 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|433592491|ref|YP_007281987.1| - 0.00042 19.8 0.0 0.00085 18.8 0.1 1.4 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|433592491|ref|YP_007281987.1| - 0.0041 16.5 0.2 0.0065 15.8 0.2 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG PcrB PF01884.17 gi|433592491|ref|YP_007281987.1| - 0.0071 15.8 0.4 0.029 13.8 0.2 1.8 2 0 0 2 2 2 1 PcrB family PucR PF07905.11 gi|433592491|ref|YP_007281987.1| - 0.017 15.4 0.0 0.11 12.7 0.0 2.2 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family DeoC PF01791.9 gi|433592492|ref|YP_007281988.1| - 2.8e-45 154.8 0.1 3.4e-45 154.5 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|433592492|ref|YP_007281988.1| - 0.00017 21.1 0.0 0.00026 20.5 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PucR PF07905.11 gi|433592492|ref|YP_007281988.1| - 0.052 13.8 0.0 0.65 10.3 0.0 2.3 2 1 0 2 2 2 0 Purine catabolism regulatory protein-like family OMPdecase PF00215.24 gi|433592492|ref|YP_007281988.1| - 0.059 13.0 0.2 0.16 11.5 0.2 1.9 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Glyco_hydro_97 PF10566.9 gi|433592492|ref|YP_007281988.1| - 0.21 10.9 0.0 0.26 10.5 0.0 1.1 1 0 0 1 1 1 0 Glycoside hydrolase 97 Cation_efflux PF01545.21 gi|433592493|ref|YP_007281989.1| - 1.5e-36 126.0 14.1 2e-36 125.6 14.1 1.1 1 0 0 1 1 1 1 Cation efflux family Gamma_PGA_hydro PF05908.11 gi|433592494|ref|YP_007281990.1| - 6.2e-15 55.1 0.0 7.7e-15 54.8 0.0 1.0 1 0 0 1 1 1 1 Poly-gamma-glutamate hydrolase NUP PF06516.11 gi|433592495|ref|YP_007281991.1| - 3e-48 164.7 0.0 4.1e-48 164.2 0.0 1.1 1 0 0 1 1 1 1 Purine nucleoside permease (NUP) PNP_UDP_1 PF01048.20 gi|433592495|ref|YP_007281991.1| - 1.4e-17 63.8 1.1 1.8e-17 63.4 1.1 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily SprT-like PF10263.9 gi|433592496|ref|YP_007281992.1| - 2.5e-12 46.7 0.1 3.7e-12 46.1 0.1 1.3 1 0 0 1 1 1 1 SprT-like family DUF4157 PF13699.6 gi|433592496|ref|YP_007281992.1| - 0.0034 17.6 0.2 0.0092 16.2 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4157) BSP PF04450.12 gi|433592496|ref|YP_007281992.1| - 0.053 13.3 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Peptidase of plants and bacteria Zn_ribbon_SprT PF17283.2 gi|433592496|ref|YP_007281992.1| - 0.15 12.0 2.0 0.3 11.0 2.0 1.6 1 0 0 1 1 1 0 SprT-like zinc ribbon domain HAD_2 PF13419.6 gi|433592498|ref|YP_007281994.1| - 1.1e-20 74.5 0.0 1.4e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433592498|ref|YP_007281994.1| - 6.4e-14 52.7 2.4 9.7e-13 48.9 2.4 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433592498|ref|YP_007281994.1| - 1.9e-10 40.6 0.1 4.5e-10 39.5 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|433592498|ref|YP_007281994.1| - 2.9e-08 34.4 0.7 4.1e-08 33.9 0.7 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|433592498|ref|YP_007281994.1| - 0.03 14.1 0.0 0.42 10.4 0.0 2.1 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase DUF4364 PF14277.6 gi|433592499|ref|YP_007281995.1| - 0.21 11.3 0.0 0.36 10.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DHQS PF01959.16 gi|433592501|ref|YP_007281997.1| - 1.7e-144 481.1 3.7 2.1e-144 480.8 3.7 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase II Hint PF01079.20 gi|433592501|ref|YP_007281997.1| - 0.00033 20.2 0.0 0.0076 15.8 0.0 2.5 2 0 0 2 2 2 1 Hint module QRPTase_C PF01729.19 gi|433592501|ref|YP_007281997.1| - 0.0047 16.7 2.0 0.17 11.7 0.3 2.5 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain TNT PF14021.6 gi|433592501|ref|YP_007281997.1| - 0.044 14.3 0.0 0.11 13.1 0.0 1.6 1 0 0 1 1 1 0 Tuberculosis necrotizing toxin Hint_2 PF13403.6 gi|433592501|ref|YP_007281997.1| - 0.057 13.7 1.3 16 5.8 0.1 3.3 3 1 0 3 3 3 0 Hint domain UPF0086 PF01868.16 gi|433592501|ref|YP_007281997.1| - 0.11 12.5 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function UPF0086 Complex1_51K PF01512.17 gi|433592502|ref|YP_007281998.1| - 4e-23 82.0 0.0 5.7e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 gi|433592502|ref|YP_007281998.1| - 8.2e-09 35.3 0.0 1.7e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.9 gi|433592502|ref|YP_007281998.1| - 0.0016 18.3 0.2 0.0089 15.9 0.1 2.3 3 0 0 3 3 3 1 SLBB domain CbiG_mid PF11761.8 gi|433592502|ref|YP_007281998.1| - 0.058 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Cobalamin biosynthesis central region zf-dskA_traR PF01258.17 gi|433592502|ref|YP_007281998.1| - 0.1 12.6 0.5 0.23 11.4 0.5 1.6 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.7 gi|433592504|ref|YP_007282000.1| - 4.6e-05 23.3 1.2 7e-05 22.8 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|433592504|ref|YP_007282000.1| - 0.00045 19.5 0.6 0.00071 18.9 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|433592504|ref|YP_007282000.1| - 0.00057 19.5 0.8 0.00084 19.0 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.9 gi|433592504|ref|YP_007282000.1| - 0.00091 19.3 0.6 0.0017 18.4 0.6 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|433592504|ref|YP_007282000.1| - 0.0071 17.1 0.2 0.0078 16.9 0.2 1.3 1 1 0 1 1 1 1 zinc-ribbon family Nudix_N_2 PF14803.6 gi|433592504|ref|YP_007282000.1| - 0.11 12.5 0.8 12 6.0 0.1 2.2 1 1 1 2 2 2 0 Nudix N-terminal zinc_ribbon_9 PF14369.6 gi|433592504|ref|YP_007282000.1| - 0.23 11.7 3.8 9.4 6.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon zf_UBZ PF18439.1 gi|433592504|ref|YP_007282000.1| - 0.59 9.8 3.8 0.25 10.9 1.2 1.7 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger DHquinase_I PF01487.15 gi|433592505|ref|YP_007282001.1| - 5.1e-44 151.2 0.1 5.9e-44 151.0 0.1 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase TFIIB PF00382.19 gi|433592506|ref|YP_007282002.1| - 3.2e-39 132.8 0.5 1.1e-19 70.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433592506|ref|YP_007282002.1| - 5.3e-16 57.9 6.6 5.9e-16 57.7 5.2 1.9 1 1 1 2 2 2 2 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|433592506|ref|YP_007282002.1| - 0.0057 16.3 0.8 0.01 15.5 0.8 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain Sigma70_r4 PF04545.16 gi|433592506|ref|YP_007282002.1| - 0.0085 15.6 0.0 0.56 9.8 0.0 3.4 3 0 0 3 3 3 1 Sigma-70, region 4 DUF5419 PF17441.2 gi|433592506|ref|YP_007282002.1| - 0.11 12.7 0.0 5 7.3 0.0 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5419) HTH_Tnp_ISL3 PF13542.6 gi|433592506|ref|YP_007282002.1| - 0.26 10.7 1.4 0.64 9.5 0.3 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Zn-ribbon_8 PF09723.10 gi|433592506|ref|YP_007282002.1| - 2.3 8.4 4.1 13 6.0 0.3 2.4 1 1 2 3 3 3 0 Zinc ribbon domain Trm112p PF03966.16 gi|433592506|ref|YP_007282002.1| - 3 8.5 7.2 30 5.3 5.2 2.9 2 1 0 2 2 2 0 Trm112p-like protein NTPase_I-T PF01931.18 gi|433592507|ref|YP_007282003.1| - 1.1e-48 165.2 0.0 1.2e-48 165.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 LexA_DNA_bind PF01726.16 gi|433592508|ref|YP_007282004.1| - 0.00097 18.9 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain HAD_2 PF13419.6 gi|433592509|ref|YP_007282005.1| - 5.1e-11 43.0 0.0 6.4e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|433592509|ref|YP_007282005.1| - 4.2e-10 40.3 0.1 1.5e-08 35.2 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433592509|ref|YP_007282005.1| - 3.9e-08 33.3 0.1 1e-07 31.9 0.1 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like MarR_2 PF12802.7 gi|433592510|ref|YP_007282006.1| - 2.6e-11 43.2 1.3 4e-07 29.8 0.2 2.6 2 0 0 2 2 2 2 MarR family MarR PF01047.22 gi|433592510|ref|YP_007282006.1| - 6.4e-10 38.8 0.0 0.00012 21.9 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|433592510|ref|YP_007282006.1| - 1.6e-09 37.7 1.5 0.0015 18.6 0.3 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_34 PF13601.6 gi|433592510|ref|YP_007282006.1| - 4.3e-09 36.4 0.0 0.0002 21.5 0.0 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|433592510|ref|YP_007282006.1| - 8.9e-09 34.8 0.0 3.7e-06 26.4 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433592510|ref|YP_007282006.1| - 1.1e-08 34.7 0.0 0.00057 19.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|433592510|ref|YP_007282006.1| - 2.6e-07 30.4 0.0 0.0026 17.6 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|433592510|ref|YP_007282006.1| - 3.1e-06 27.1 0.2 0.00023 21.1 0.0 2.7 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|433592510|ref|YP_007282006.1| - 0.0001 22.4 0.1 0.00058 20.0 0.0 2.2 3 0 0 3 3 2 1 Iron dependent repressor, N-terminal DNA binding domain RP-C PF03428.13 gi|433592510|ref|YP_007282006.1| - 0.00015 21.5 0.1 0.14 11.8 0.1 2.3 2 0 0 2 2 2 2 Replication protein C N-terminal domain DUF2250 PF10007.9 gi|433592510|ref|YP_007282006.1| - 0.00036 20.6 0.0 0.46 10.6 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|433592510|ref|YP_007282006.1| - 0.00071 19.3 0.0 0.23 11.1 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) HTH_11 PF08279.12 gi|433592510|ref|YP_007282006.1| - 0.00074 19.4 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|433592510|ref|YP_007282006.1| - 0.00089 19.0 2.1 0.0064 16.3 0.5 2.5 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|433592510|ref|YP_007282006.1| - 0.0033 17.3 0.0 0.014 15.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain DprA_WH PF17782.1 gi|433592510|ref|YP_007282006.1| - 0.0042 17.2 2.4 0.076 13.1 0.1 2.3 2 0 0 2 2 2 1 DprA winged helix domain GntR PF00392.21 gi|433592510|ref|YP_007282006.1| - 0.0043 16.7 0.1 0.04 13.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|433592510|ref|YP_007282006.1| - 0.031 14.8 0.4 0.2 12.2 0.0 2.4 2 1 0 2 2 2 0 Winged helix DNA-binding domain FaeA PF04703.12 gi|433592510|ref|YP_007282006.1| - 0.034 14.5 0.0 0.92 9.9 0.0 2.2 2 0 0 2 2 2 0 FaeA-like protein HTH_AsnC-type PF13404.6 gi|433592510|ref|YP_007282006.1| - 0.062 13.1 0.1 0.16 11.8 0.1 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Rrf2 PF02082.20 gi|433592510|ref|YP_007282006.1| - 0.088 13.2 0.0 0.28 11.6 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|433592510|ref|YP_007282006.1| - 0.14 12.0 0.0 1.4 8.7 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain Band_7 PF01145.25 gi|433592511|ref|YP_007282007.1| - 1.5e-37 129.3 4.2 1.5e-37 129.3 4.2 2.3 3 0 0 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|433592511|ref|YP_007282007.1| - 0.00079 19.2 0.2 0.002 17.9 0.2 1.7 1 0 0 1 1 1 1 SPFH domain-Band 7 family NfeD PF01957.18 gi|433592512|ref|YP_007282008.1| - 1.1e-05 25.7 0.1 2.6e-05 24.5 0.1 1.7 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding PK PF00224.21 gi|433592514|ref|YP_007282010.1| - 6.6e-118 393.6 4.9 9.7e-118 393.0 4.9 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|433592514|ref|YP_007282010.1| - 3.1e-31 108.0 0.7 3.1e-31 108.0 0.7 2.0 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|433592514|ref|YP_007282010.1| - 5.5e-11 42.0 0.3 5.5e-11 42.0 0.3 3.1 3 1 0 3 3 3 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|433592514|ref|YP_007282010.1| - 0.0021 17.2 2.8 0.0053 15.9 2.4 1.9 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family GYD PF08734.11 gi|433592515|ref|YP_007282011.1| - 1.4e-16 60.2 0.1 1.5e-16 60.1 0.1 1.0 1 0 0 1 1 1 1 GYD domain tRNA-synt_1g PF09334.11 gi|433592517|ref|YP_007282013.1| - 1.1e-144 482.0 0.0 1.3e-144 481.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|433592517|ref|YP_007282013.1| - 4.6e-21 74.7 0.1 8.2e-21 73.9 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|433592517|ref|YP_007282013.1| - 2e-14 52.8 0.1 1.9e-08 33.0 0.2 3.0 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|433592517|ref|YP_007282013.1| - 2.1e-10 40.4 0.0 3e-07 30.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|433592517|ref|YP_007282013.1| - 1.1e-07 31.9 0.0 2.3e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|433592517|ref|YP_007282013.1| - 0.0018 17.3 0.2 0.49 9.2 0.0 3.1 2 1 1 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|433592517|ref|YP_007282013.1| - 0.08 11.9 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (R) UCR_Fe-S_N PF10399.9 gi|433592518|ref|YP_007282014.1| - 0.047 13.0 1.4 0.047 13.0 1.4 2.5 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SMN PF06003.12 gi|433592518|ref|YP_007282014.1| - 0.069 12.4 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) Pyridoxal_deC PF00282.19 gi|433592519|ref|YP_007282015.1| - 7.3e-27 94.0 0.0 2.1e-26 92.6 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|433592519|ref|YP_007282015.1| - 1.9e-14 53.5 0.0 2.4e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|433592519|ref|YP_007282015.1| - 6.2e-07 28.9 0.0 2.4e-06 27.0 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|433592519|ref|YP_007282015.1| - 0.00015 21.2 0.1 0.00023 20.6 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|433592519|ref|YP_007282015.1| - 0.00016 21.0 0.0 0.00024 20.5 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase SHMT PF00464.19 gi|433592519|ref|YP_007282015.1| - 0.0015 17.2 0.0 0.0023 16.6 0.0 1.3 1 0 0 1 1 1 1 Serine hydroxymethyltransferase SepSecS PF05889.13 gi|433592519|ref|YP_007282015.1| - 0.13 10.9 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Asparaginase PF00710.20 gi|433592520|ref|YP_007282016.1| - 1.6e-59 200.7 0.3 3.6e-59 199.5 0.3 1.6 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|433592520|ref|YP_007282016.1| - 4.7e-26 91.2 0.1 3.8e-25 88.3 0.0 2.2 2 1 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|433592520|ref|YP_007282016.1| - 8e-16 57.1 0.0 1.4e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 GatD N-terminal domain Acetyltransf_1 PF00583.25 gi|433592521|ref|YP_007282017.1| - 8e-09 35.8 0.2 1.1e-07 32.1 0.1 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|433592521|ref|YP_007282017.1| - 0.00028 21.0 0.1 0.54 10.3 0.0 3.0 3 0 0 3 3 3 2 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433592521|ref|YP_007282017.1| - 0.00031 20.7 0.0 0.0022 17.9 0.0 2.2 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|433592521|ref|YP_007282017.1| - 0.0014 19.0 0.0 0.0028 18.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PknH_C PF14032.6 gi|433592521|ref|YP_007282017.1| - 0.0014 18.5 0.9 0.0027 17.6 0.9 1.5 1 0 0 1 1 1 1 PknH-like extracellular domain PanZ PF12568.8 gi|433592521|ref|YP_007282017.1| - 0.0024 17.6 0.0 0.005 16.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|433592521|ref|YP_007282017.1| - 0.005 16.9 0.1 0.012 15.7 0.1 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|433592521|ref|YP_007282017.1| - 0.022 15.4 3.9 0.15 12.7 0.2 2.7 2 1 1 3 3 3 0 Acetyltransferase (GNAT) domain ThiS PF02597.20 gi|433592522|ref|YP_007282018.1| - 8.6e-16 58.4 0.6 9.7e-16 58.2 0.6 1.0 1 0 0 1 1 1 1 ThiS family TrkA_C PF02080.21 gi|433592523|ref|YP_007282019.1| - 8.7e-09 35.1 1.6 4.9e-08 32.7 0.5 2.5 2 0 0 2 2 2 1 TrkA-C domain Trypsin_2 PF13365.6 gi|433592523|ref|YP_007282019.1| - 0.58 11.0 4.5 0.85 10.5 1.7 2.6 2 1 1 3 3 3 0 Trypsin-like peptidase domain TrkA_C PF02080.21 gi|433592524|ref|YP_007282020.1| - 5.6e-05 22.9 0.1 0.00033 20.4 0.0 2.4 2 0 0 2 2 2 1 TrkA-C domain 5TM-5TMR_LYT PF07694.12 gi|433592524|ref|YP_007282020.1| - 0.41 10.1 9.3 0.67 9.4 9.3 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_N PF02254.18 gi|433592525|ref|YP_007282021.1| - 4.1e-30 104.4 1.2 6.4e-30 103.8 1.2 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|433592525|ref|YP_007282021.1| - 4.7e-13 48.9 2.6 4.7e-13 48.9 2.6 2.3 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.31 gi|433592525|ref|YP_007282021.1| - 0.0002 20.7 0.2 0.00039 19.7 0.2 1.4 1 0 0 1 1 1 1 Ion transport protein IRK PF01007.20 gi|433592525|ref|YP_007282021.1| - 0.0011 18.7 0.1 0.0022 17.8 0.1 1.4 1 0 0 1 1 1 1 Inward rectifier potassium channel transmembrane domain NAD_binding_10 PF13460.6 gi|433592525|ref|YP_007282021.1| - 0.0017 18.3 1.4 0.0034 17.3 1.4 1.6 1 0 0 1 1 1 1 NAD(P)H-binding NTP_transf_3 PF12804.7 gi|433592525|ref|YP_007282021.1| - 0.0049 17.2 0.5 0.015 15.6 0.5 1.8 1 1 0 1 1 1 1 MobA-like NTP transferase domain NAD_binding_7 PF13241.6 gi|433592525|ref|YP_007282021.1| - 0.0049 17.3 0.3 0.01 16.2 0.3 1.5 1 1 0 1 1 1 1 Putative NAD(P)-binding XdhC_C PF13478.6 gi|433592525|ref|YP_007282021.1| - 0.043 14.3 0.1 0.083 13.4 0.1 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain NmrA PF05368.13 gi|433592525|ref|YP_007282021.1| - 0.044 13.3 0.1 0.066 12.8 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family Shikimate_DH PF01488.20 gi|433592525|ref|YP_007282021.1| - 0.096 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase PIN_9 PF18477.1 gi|433592525|ref|YP_007282021.1| - 0.13 12.6 3.2 0.58 10.5 0.0 2.5 2 0 0 2 2 2 0 PIN like domain DUF1269 PF06897.12 gi|433592525|ref|YP_007282021.1| - 2.1 8.7 7.0 0.39 11.0 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1269) DUF983 PF06170.12 gi|433592525|ref|YP_007282021.1| - 5.8 7.4 7.3 2.5 8.6 0.1 3.2 2 1 2 4 4 4 0 Protein of unknown function (DUF983) HPP PF04982.13 gi|433592526|ref|YP_007282022.1| - 3.8e-16 59.4 6.2 7.9e-16 58.3 6.2 1.5 1 0 0 1 1 1 1 HPP family Usp PF00582.26 gi|433592526|ref|YP_007282022.1| - 2.8e-05 24.6 1.0 8.5e-05 23.1 0.3 2.0 2 0 0 2 2 2 1 Universal stress protein family PDZ_1 PF12812.7 gi|433592526|ref|YP_007282022.1| - 0.11 12.5 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 PDZ-like domain DUF2244 PF10003.9 gi|433592526|ref|YP_007282022.1| - 2.9 7.6 9.2 1.8 8.2 2.0 3.0 3 0 0 3 3 3 0 Integral membrane protein (DUF2244) DeoC PF01791.9 gi|433592527|ref|YP_007282023.1| - 0.00019 21.1 7.3 0.00045 19.9 7.3 1.6 1 1 0 1 1 1 1 DeoC/LacD family aldolase PGI PF00342.19 gi|433592528|ref|YP_007282024.1| - 4e-24 85.1 0.0 7.8e-21 74.2 0.0 2.1 2 0 0 2 2 2 2 Phosphoglucose isomerase UPF0149 PF03695.13 gi|433592528|ref|YP_007282024.1| - 0.08 13.2 1.9 0.28 11.5 0.0 2.5 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0149) CPBP PF02517.16 gi|433592529|ref|YP_007282025.1| - 4.3e-15 55.8 4.7 4.3e-15 55.8 4.7 3.4 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease PIN_6 PF17146.4 gi|433592530|ref|YP_007282026.1| - 2.1e-12 47.4 0.1 5.6e-12 46.0 0.0 1.6 2 0 0 2 2 2 1 PIN domain of ribonuclease Zn-ribbon_8 PF09723.10 gi|433592530|ref|YP_007282026.1| - 8.6e-05 22.6 2.9 0.00019 21.4 2.9 1.6 1 0 0 1 1 1 1 Zinc ribbon domain PIN_5 PF08745.11 gi|433592530|ref|YP_007282026.1| - 0.0006 19.3 1.4 0.00073 19.0 0.7 1.5 1 1 1 2 2 2 1 PINc domain ribonuclease zinc-ribbons_6 PF07191.12 gi|433592530|ref|YP_007282026.1| - 0.0025 17.7 0.9 0.0041 17.1 0.9 1.3 1 0 0 1 1 1 1 zinc-ribbons DNA_ligase_ZBD PF03119.16 gi|433592530|ref|YP_007282026.1| - 0.0026 17.7 1.5 0.037 14.0 0.2 2.5 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain HypA PF01155.19 gi|433592530|ref|YP_007282026.1| - 0.0032 17.5 1.7 0.0047 16.9 1.7 1.4 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|433592530|ref|YP_007282026.1| - 0.0054 16.7 0.3 0.0076 16.2 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|433592530|ref|YP_007282026.1| - 0.0067 17.1 0.1 0.0095 16.7 0.1 1.3 1 0 0 1 1 1 1 zinc-ribbon family zf-C3HC4_3 PF13920.6 gi|433592530|ref|YP_007282026.1| - 0.0098 15.7 1.3 0.014 15.2 1.3 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) NOB1_Zn_bind PF08772.11 gi|433592530|ref|YP_007282026.1| - 0.014 15.5 0.4 0.025 14.8 0.4 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Rad50_zn_hook PF04423.14 gi|433592530|ref|YP_007282026.1| - 0.02 14.7 2.1 0.26 11.2 1.1 2.4 1 1 1 2 2 2 0 Rad50 zinc hook motif Prok-RING_4 PF14447.6 gi|433592530|ref|YP_007282026.1| - 0.024 14.5 0.5 0.084 12.8 1.2 1.6 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 DUF4411 PF14367.6 gi|433592530|ref|YP_007282026.1| - 0.037 14.0 0.2 0.39 10.6 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) C1_2 PF03107.16 gi|433592530|ref|YP_007282026.1| - 0.043 14.1 0.2 0.087 13.2 0.2 1.5 1 0 0 1 1 1 0 C1 domain DUF2710 PF10921.8 gi|433592530|ref|YP_007282026.1| - 0.07 13.5 0.8 0.19 12.2 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2710) DUF3663 PF12404.8 gi|433592530|ref|YP_007282026.1| - 0.096 12.7 0.0 0.26 11.3 0.0 1.8 1 0 0 1 1 1 0 Peptidase Zn_ribbon_SprT PF17283.2 gi|433592530|ref|YP_007282026.1| - 0.1 12.5 4.4 1.3 8.9 4.4 2.1 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-C2HC_2 PF13913.6 gi|433592530|ref|YP_007282026.1| - 0.15 12.0 0.6 0.15 12.0 0.6 2.3 1 1 1 2 2 2 0 zinc-finger of a C2HC-type CpXC PF14353.6 gi|433592530|ref|YP_007282026.1| - 0.16 12.0 1.1 3.9 7.6 0.3 2.8 1 1 2 3 3 3 0 CpXC protein zf-C2H2 PF00096.26 gi|433592530|ref|YP_007282026.1| - 0.27 11.8 1.7 3.3 8.4 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C3HC4_2 PF13923.6 gi|433592530|ref|YP_007282026.1| - 0.32 10.9 2.4 0.55 10.1 2.4 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C2H2_4 PF13894.6 gi|433592530|ref|YP_007282026.1| - 0.32 12.0 1.6 13 7.0 0.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger PRC PF05239.16 gi|433592531|ref|YP_007282027.1| - 1.9e-11 43.9 0.1 2.2e-11 43.7 0.1 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF2171 PF09939.9 gi|433592531|ref|YP_007282027.1| - 0.028 14.7 0.2 1.3 9.4 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2171) GTP_EFTU PF00009.27 gi|433592532|ref|YP_007282028.1| - 3.1e-31 108.4 0.0 2.6e-30 105.4 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|433592532|ref|YP_007282028.1| - 1e-24 86.3 0.2 3e-24 84.7 0.2 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|433592532|ref|YP_007282028.1| - 5.5e-22 77.9 1.1 1.9e-21 76.1 0.7 2.2 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|433592532|ref|YP_007282028.1| - 1.2e-11 44.9 9.2 5.5e-08 33.1 0.1 3.2 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|433592532|ref|YP_007282028.1| - 2.3e-08 34.1 0.0 7.1e-08 32.5 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|433592532|ref|YP_007282028.1| - 0.0017 18.5 0.1 0.22 11.6 0.0 2.7 2 0 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.17 gi|433592532|ref|YP_007282028.1| - 0.0057 16.5 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|433592532|ref|YP_007282028.1| - 0.096 12.9 0.0 0.38 11.0 0.0 2.0 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Delta_lysin PF05372.11 gi|433592532|ref|YP_007282028.1| - 0.25 10.7 0.9 0.9 8.9 0.9 2.0 1 0 0 1 1 1 0 Delta lysin family Cyclophil_like PF04126.13 gi|433592533|ref|YP_007282029.1| - 4.2e-19 68.5 0.0 4.5e-19 68.4 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like bPH_6 PF10756.9 gi|433592534|ref|YP_007282030.1| - 0.0096 16.0 6.5 0.029 14.4 6.5 1.9 1 1 0 1 1 1 1 Bacterial PH domain DUF2244 PF10003.9 gi|433592534|ref|YP_007282030.1| - 0.67 9.6 14.4 3.7 7.2 1.9 3.3 2 1 1 3 3 3 0 Integral membrane protein (DUF2244) DUF2631 PF10939.8 gi|433592534|ref|YP_007282030.1| - 0.87 9.5 4.7 5.6 6.9 4.7 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2631) DUF3483 PF11982.8 gi|433592534|ref|YP_007282030.1| - 1.1 8.9 7.8 0.25 10.9 4.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3483) CTP_synth_N PF06418.14 gi|433592536|ref|YP_007282032.1| - 2.5e-125 417.1 0.1 3.1e-125 416.8 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|433592536|ref|YP_007282032.1| - 2.7e-53 180.6 0.0 4.6e-53 179.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|433592536|ref|YP_007282032.1| - 7.2e-06 25.9 0.0 3.7e-05 23.6 0.0 2.1 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|433592536|ref|YP_007282032.1| - 0.0023 18.0 0.0 0.0039 17.3 0.0 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain GMP_synt_C PF00958.22 gi|433592537|ref|YP_007282033.1| - 5.2e-29 100.1 0.3 5.6e-28 96.8 0.1 2.3 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|433592537|ref|YP_007282033.1| - 3.3e-08 32.9 0.0 3.2e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|433592537|ref|YP_007282033.1| - 5.9e-05 22.0 0.0 0.0012 17.7 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|433592537|ref|YP_007282033.1| - 0.0017 17.9 0.1 0.01 15.4 0.1 1.9 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|433592537|ref|YP_007282033.1| - 0.0048 16.5 0.0 0.011 15.4 0.0 1.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|433592537|ref|YP_007282033.1| - 0.0059 16.3 0.0 0.0096 15.6 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 gi|433592537|ref|YP_007282033.1| - 0.046 13.5 0.0 0.075 12.8 0.0 1.6 1 1 0 1 1 1 0 PP-loop family PAPS_reduct PF01507.19 gi|433592537|ref|YP_007282033.1| - 0.081 13.0 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family 5-FTHF_cyc-lig PF01812.20 gi|433592539|ref|YP_007282035.1| - 2.9e-27 95.8 0.0 3.4e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family MoCF_biosynth PF00994.24 gi|433592540|ref|YP_007282036.1| - 5.6e-21 74.7 1.1 7.2e-21 74.4 1.1 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain Fe-ADH_2 PF13685.6 gi|433592540|ref|YP_007282036.1| - 0.012 15.4 0.2 0.019 14.7 0.2 1.3 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase ADH_zinc_N PF00107.26 gi|433592541|ref|YP_007282037.1| - 5.3e-35 120.2 0.0 8.8e-35 119.5 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|433592541|ref|YP_007282037.1| - 9.4e-21 75.3 0.0 1.4e-20 74.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|433592541|ref|YP_007282037.1| - 6.2e-17 61.5 0.0 1.5e-16 60.2 0.0 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 gi|433592541|ref|YP_007282037.1| - 0.00097 18.5 0.1 0.0017 17.7 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|433592541|ref|YP_007282037.1| - 0.0041 16.6 0.1 0.0068 15.9 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.17 gi|433592541|ref|YP_007282037.1| - 0.06 12.4 0.1 1.2 8.2 0.1 2.1 1 1 1 2 2 2 0 RmlD substrate binding domain MHYT PF03707.16 gi|433592542|ref|YP_007282038.1| - 0.89 9.8 4.9 1.9 8.7 4.6 1.7 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat SQS_PSY PF00494.19 gi|433592543|ref|YP_007282039.1| - 0.063 12.8 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Squalene/phytoene synthase Methyltransf_24 PF13578.6 gi|433592545|ref|YP_007282041.1| - 5.1e-17 62.8 0.2 1.6e-16 61.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain DUF3177 PF11375.8 gi|433592545|ref|YP_007282041.1| - 0.27 11.0 0.0 0.39 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3177) Bac_rhamnosid6H PF17389.2 gi|433592546|ref|YP_007282042.1| - 0.0039 16.5 0.1 0.0087 15.3 0.1 1.5 1 1 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain TPR_14 PF13428.6 gi|433592546|ref|YP_007282042.1| - 0.33 11.9 7.7 2.7 9.0 1.5 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat Methyltransf_23 PF13489.6 gi|433592547|ref|YP_007282043.1| - 4e-24 85.3 0.0 6e-24 84.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433592547|ref|YP_007282043.1| - 6.1e-24 84.5 0.1 8.8e-24 84.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433592547|ref|YP_007282043.1| - 5.8e-22 78.2 0.1 9.1e-22 77.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433592547|ref|YP_007282043.1| - 5.2e-21 75.0 0.0 6.3e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433592547|ref|YP_007282043.1| - 4.7e-14 52.3 0.0 1.8e-13 50.4 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|433592547|ref|YP_007282043.1| - 5.8e-14 52.6 0.0 9.1e-14 52.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|433592547|ref|YP_007282043.1| - 2.4e-08 33.6 0.0 3.7e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|433592547|ref|YP_007282043.1| - 8.6e-06 25.5 0.0 2.9e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|433592547|ref|YP_007282043.1| - 0.00011 22.0 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.15 gi|433592547|ref|YP_007282043.1| - 0.00012 22.1 0.1 0.0095 15.8 0.1 2.3 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|433592547|ref|YP_007282043.1| - 0.00031 19.4 0.0 0.00042 19.0 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.13 gi|433592547|ref|YP_007282043.1| - 0.0014 18.1 0.0 0.0018 17.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_9 PF08003.11 gi|433592547|ref|YP_007282043.1| - 0.016 14.1 0.0 0.02 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TPMT PF05724.11 gi|433592547|ref|YP_007282043.1| - 0.092 12.4 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) FtsJ PF01728.19 gi|433592547|ref|YP_007282043.1| - 0.11 12.7 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase MTS PF05175.14 gi|433592547|ref|YP_007282043.1| - 0.12 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain KAAG1 PF15354.6 gi|433592547|ref|YP_007282043.1| - 0.12 12.9 0.1 0.57 10.8 0.0 2.0 2 0 0 2 2 2 0 Kidney-associated antigen 1 Glycos_transf_1 PF00534.20 gi|433592548|ref|YP_007282044.1| - 8.2e-34 116.6 0.0 1.2e-33 116.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433592548|ref|YP_007282044.1| - 1e-27 97.2 0.3 2.4e-27 96.0 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|433592548|ref|YP_007282044.1| - 2.4e-27 96.0 2.8 4.9e-27 95.0 0.8 2.3 2 1 1 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433592548|ref|YP_007282044.1| - 3.4e-21 76.3 3.8 2.1e-20 73.8 2.5 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|433592548|ref|YP_007282044.1| - 8.8e-13 48.5 0.0 1.7e-12 47.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|433592548|ref|YP_007282044.1| - 0.0055 15.4 0.0 0.0081 14.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glyco_transf_5 PF08323.11 gi|433592548|ref|YP_007282044.1| - 0.14 11.8 0.0 0.86 9.2 0.0 2.0 2 0 0 2 2 2 0 Starch synthase catalytic domain NUDIX PF00293.28 gi|433592549|ref|YP_007282045.1| - 9.5e-16 58.0 0.5 1.2e-15 57.7 0.5 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|433592549|ref|YP_007282045.1| - 0.0061 16.5 0.0 0.0099 15.9 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain DAGK_cat PF00781.24 gi|433592550|ref|YP_007282046.1| - 2.7e-24 85.2 0.7 4.1e-24 84.6 0.7 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 gi|433592550|ref|YP_007282046.1| - 0.0035 16.6 0.4 0.0057 15.9 0.4 1.3 1 0 0 1 1 1 1 ATP-NAD kinase PHP_C PF13263.6 gi|433592551|ref|YP_007282047.1| - 6e-18 64.3 0.0 2.2e-17 62.5 0.0 2.0 2 0 0 2 2 2 1 PHP-associated Cys_rich_CPXG PF14255.6 gi|433592552|ref|YP_007282048.1| - 0.02 14.8 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 Cysteine-rich CPXCG PAS_4 PF08448.10 gi|433592553|ref|YP_007282049.1| - 9.6e-28 96.6 9.6 5e-13 49.3 0.3 4.0 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|433592553|ref|YP_007282049.1| - 2.9e-26 91.7 0.0 1e-16 61.1 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|433592553|ref|YP_007282049.1| - 3.6e-21 75.3 0.3 1.8e-15 56.9 0.0 4.1 4 0 0 4 4 4 2 PAS fold PAS_3 PF08447.12 gi|433592553|ref|YP_007282049.1| - 4.2e-19 68.6 0.1 2.4e-07 31.0 0.1 4.0 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.26 gi|433592553|ref|YP_007282049.1| - 5.9e-12 46.1 0.0 1.4e-11 44.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|433592553|ref|YP_007282049.1| - 1.8e-11 43.8 0.0 3.3e-05 23.8 0.0 3.2 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.6 gi|433592553|ref|YP_007282049.1| - 6.3e-09 35.9 0.0 1.8e-08 34.4 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|433592553|ref|YP_007282049.1| - 0.0065 16.5 1.9 0.029 14.4 1.4 2.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|433592553|ref|YP_007282049.1| - 0.0073 15.9 0.4 0.014 15.0 0.4 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_7 PF12860.7 gi|433592553|ref|YP_007282049.1| - 0.03 14.5 0.1 4.9 7.4 0.1 3.5 2 1 0 2 2 2 0 PAS fold HTH_AsnC-type PF13404.6 gi|433592554|ref|YP_007282050.1| - 2.6e-19 68.7 2.7 1.2e-17 63.4 1.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|433592554|ref|YP_007282050.1| - 9.8e-16 57.1 0.3 1.1e-14 53.7 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|433592554|ref|YP_007282050.1| - 1.2e-09 37.9 0.8 1.2e-09 37.9 0.8 1.6 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain Sigma70_r4_2 PF08281.12 gi|433592554|ref|YP_007282050.1| - 9.2e-05 22.0 0.0 0.00019 21.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|433592554|ref|YP_007282050.1| - 0.00022 21.2 0.0 0.0004 20.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|433592554|ref|YP_007282050.1| - 0.00032 20.2 0.0 0.00052 19.5 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|433592554|ref|YP_007282050.1| - 0.0023 17.3 0.2 0.0051 16.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 gi|433592554|ref|YP_007282050.1| - 0.0044 16.9 0.7 0.01 15.8 0.0 2.0 2 1 1 3 3 3 1 HTH domain MarR_2 PF12802.7 gi|433592554|ref|YP_007282050.1| - 0.0056 16.5 0.1 0.02 14.8 0.0 1.9 1 1 1 2 2 2 1 MarR family DUF746 PF05344.11 gi|433592554|ref|YP_007282050.1| - 0.0063 16.3 0.1 0.27 11.1 0.0 2.4 2 0 0 2 2 2 1 Domain of Unknown Function (DUF746) NapD PF03927.13 gi|433592554|ref|YP_007282050.1| - 0.0095 16.0 1.3 0.018 15.1 1.3 1.4 1 0 0 1 1 1 1 NapD protein HTH_23 PF13384.6 gi|433592554|ref|YP_007282050.1| - 0.011 15.5 0.1 0.021 14.6 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain GYD PF08734.11 gi|433592554|ref|YP_007282050.1| - 0.014 15.3 0.9 0.037 14.0 0.5 1.9 1 1 0 2 2 2 0 GYD domain MarR PF01047.22 gi|433592554|ref|YP_007282050.1| - 0.016 15.1 0.1 0.038 13.9 0.0 1.6 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.10 gi|433592554|ref|YP_007282050.1| - 0.02 14.7 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|433592554|ref|YP_007282050.1| - 0.025 14.3 0.2 0.17 11.7 0.0 2.1 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|433592554|ref|YP_007282050.1| - 0.038 13.6 0.0 0.078 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GerE PF00196.19 gi|433592554|ref|YP_007282050.1| - 0.043 13.4 0.0 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Mga PF08280.11 gi|433592554|ref|YP_007282050.1| - 0.054 13.5 0.0 0.097 12.7 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Sin3a_C PF16879.5 gi|433592554|ref|YP_007282050.1| - 0.064 13.0 0.1 0.064 13.0 0.1 1.1 1 0 0 1 1 1 0 C-terminal domain of Sin3a protein HTH_28 PF13518.6 gi|433592554|ref|YP_007282050.1| - 0.066 13.4 0.0 0.36 11.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|433592554|ref|YP_007282050.1| - 0.072 12.9 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|433592554|ref|YP_007282050.1| - 0.088 12.7 0.0 0.2 11.5 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family KorB PF08535.10 gi|433592554|ref|YP_007282050.1| - 0.11 12.6 0.4 3 7.9 0.1 2.1 1 1 0 2 2 2 0 KorB domain CPSase_sm_chain PF00988.22 gi|433592555|ref|YP_007282051.1| - 5.6e-36 123.2 0.1 1.1e-34 119.1 0.0 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|433592555|ref|YP_007282051.1| - 2e-34 119.1 0.0 2.8e-34 118.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|433592555|ref|YP_007282051.1| - 6.4e-06 26.1 0.4 0.00077 19.3 0.4 2.3 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|433592555|ref|YP_007282051.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family Biotin_lipoyl PF00364.22 gi|433592555|ref|YP_007282051.1| - 0.076 12.9 0.0 2.1 8.3 0.1 2.7 2 0 0 2 2 2 0 Biotin-requiring enzyme Pyr_redox_2 PF07992.14 gi|433592556|ref|YP_007282052.1| - 1.4e-07 31.0 0.5 6.9e-06 25.5 0.1 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|433592556|ref|YP_007282052.1| - 5.5e-05 22.7 1.2 5.5e-05 22.7 1.2 1.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|433592556|ref|YP_007282052.1| - 5.6e-05 22.5 0.0 0.037 13.3 0.1 2.6 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|433592556|ref|YP_007282052.1| - 9.1e-05 22.6 0.3 0.00028 21.1 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|433592556|ref|YP_007282052.1| - 0.00011 21.4 0.2 0.00011 21.4 0.2 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|433592556|ref|YP_007282052.1| - 0.00011 21.6 0.1 0.00024 20.5 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|433592556|ref|YP_007282052.1| - 0.00012 21.4 0.4 0.00012 21.4 0.4 2.5 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|433592556|ref|YP_007282052.1| - 0.00095 18.0 0.0 0.0032 16.2 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|433592556|ref|YP_007282052.1| - 0.0012 17.9 0.2 0.017 14.2 0.2 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein DAO PF01266.24 gi|433592556|ref|YP_007282052.1| - 0.005 16.5 1.2 0.005 16.5 1.2 3.2 1 1 1 3 3 3 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|433592556|ref|YP_007282052.1| - 0.0063 17.1 0.1 0.013 16.0 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|433592556|ref|YP_007282052.1| - 0.013 14.8 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|433592556|ref|YP_007282052.1| - 0.021 14.1 0.0 0.037 13.3 0.0 1.3 1 0 0 1 1 1 0 Thi4 family 3HCDH_N PF02737.18 gi|433592556|ref|YP_007282052.1| - 0.1 12.5 0.5 0.41 10.5 0.0 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Peripla_BP_2 PF01497.18 gi|433592557|ref|YP_007282053.1| - 2e-13 50.5 0.0 2.6e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein SIMPL PF04402.14 gi|433592558|ref|YP_007282054.1| - 7.8e-35 121.2 7.5 9.2e-35 120.9 7.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) He_PIG PF05345.12 gi|433592558|ref|YP_007282054.1| - 0.42 10.8 9.2 13 6.1 0.3 4.2 3 2 0 3 3 3 0 Putative Ig domain PALP PF00291.25 gi|433592559|ref|YP_007282055.1| - 9.4e-57 192.6 6.7 1.1e-56 192.4 6.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|433592559|ref|YP_007282055.1| - 0.00039 20.4 0.7 0.0049 16.8 0.7 2.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase GRIP PF01465.20 gi|433592559|ref|YP_007282055.1| - 0.16 11.9 0.1 0.33 10.9 0.1 1.4 1 0 0 1 1 1 0 GRIP domain ECH_1 PF00378.20 gi|433592560|ref|YP_007282056.1| - 2.1e-55 187.8 0.0 2.6e-55 187.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|433592560|ref|YP_007282056.1| - 1.4e-22 80.7 0.0 6.7e-19 68.6 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Glycos_transf_2 PF00535.26 gi|433592561|ref|YP_007282057.1| - 1.8e-16 60.4 0.0 4.4e-16 59.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|433592561|ref|YP_007282057.1| - 6.1e-07 29.6 0.1 0.00038 20.4 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|433592561|ref|YP_007282057.1| - 0.0014 18.2 0.0 0.0028 17.2 0.0 1.4 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Methyltransf_25 PF13649.6 gi|433592562|ref|YP_007282058.1| - 2.9e-24 85.6 0.1 5.5e-24 84.7 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433592562|ref|YP_007282058.1| - 1.6e-23 83.2 0.0 2.8e-23 82.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433592562|ref|YP_007282058.1| - 1.7e-18 66.9 0.0 2.4e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433592562|ref|YP_007282058.1| - 1.2e-14 54.8 0.0 2.5e-14 53.8 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433592562|ref|YP_007282058.1| - 2.1e-14 53.5 0.0 2.7e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|433592562|ref|YP_007282058.1| - 4.4e-13 49.4 0.0 5.8e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|433592562|ref|YP_007282058.1| - 3.9e-07 29.9 0.0 6.8e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|433592562|ref|YP_007282058.1| - 4.8e-05 23.0 0.0 7.3e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|433592562|ref|YP_007282058.1| - 0.00026 20.4 0.0 0.00035 20.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 gi|433592562|ref|YP_007282058.1| - 0.00062 18.8 0.0 0.00084 18.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.17 gi|433592562|ref|YP_007282058.1| - 0.00099 18.6 0.0 0.0018 17.8 0.0 1.4 1 1 0 1 1 1 1 Putative methyltransferase UPF0020 PF01170.18 gi|433592562|ref|YP_007282058.1| - 0.0011 18.8 0.0 0.0021 17.8 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 TPMT PF05724.11 gi|433592562|ref|YP_007282058.1| - 0.0018 18.0 0.0 0.0027 17.4 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) RrnaAD PF00398.20 gi|433592562|ref|YP_007282058.1| - 0.0041 16.2 0.0 0.0055 15.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_20 PF12147.8 gi|433592562|ref|YP_007282058.1| - 0.0055 15.9 0.0 0.0076 15.4 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.19 gi|433592562|ref|YP_007282058.1| - 0.0061 16.3 0.0 0.0099 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|433592562|ref|YP_007282058.1| - 0.009 15.3 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|433592562|ref|YP_007282058.1| - 0.0099 15.5 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) DUF938 PF06080.12 gi|433592562|ref|YP_007282058.1| - 0.017 14.9 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_32 PF13679.6 gi|433592562|ref|YP_007282058.1| - 0.022 14.8 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|433592562|ref|YP_007282058.1| - 0.038 13.0 0.0 0.08 11.9 0.0 1.5 1 1 1 2 2 2 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_15 PF09445.10 gi|433592562|ref|YP_007282058.1| - 0.08 12.5 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|433592562|ref|YP_007282058.1| - 0.13 12.2 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain HTH_24 PF13412.6 gi|433592563|ref|YP_007282059.1| - 3.1e-05 23.4 0.0 5.1e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|433592563|ref|YP_007282059.1| - 7.7e-05 22.5 0.1 0.00012 21.9 0.1 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|433592563|ref|YP_007282059.1| - 0.0003 20.4 0.1 0.00054 19.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|433592563|ref|YP_007282059.1| - 0.00097 19.2 0.2 0.002 18.2 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|433592563|ref|YP_007282059.1| - 0.0072 16.2 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.19 gi|433592563|ref|YP_007282059.1| - 0.0084 16.0 0.1 0.012 15.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|433592563|ref|YP_007282059.1| - 0.012 15.6 0.3 0.086 12.8 0.0 2.4 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain MarR PF01047.22 gi|433592563|ref|YP_007282059.1| - 0.019 14.9 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 MarR family Peptidase_M28 PF04389.17 gi|433592563|ref|YP_007282059.1| - 0.025 14.2 0.0 0.032 13.9 0.0 1.1 1 0 0 1 1 1 0 Peptidase family M28 HTH_36 PF13730.6 gi|433592563|ref|YP_007282059.1| - 0.061 13.3 0.0 0.24 11.4 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|433592563|ref|YP_007282059.1| - 0.07 13.1 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|433592563|ref|YP_007282059.1| - 0.074 13.0 0.0 0.1 12.6 0.0 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|433592563|ref|YP_007282059.1| - 0.083 12.7 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|433592563|ref|YP_007282059.1| - 0.1 12.5 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|433592563|ref|YP_007282059.1| - 0.17 12.3 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Lactamase_B PF00753.27 gi|433592564|ref|YP_007282060.1| - 3.6e-16 59.7 4.7 5.5e-16 59.2 4.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433592564|ref|YP_007282060.1| - 2.8e-05 23.7 0.7 5.2e-05 22.9 0.7 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain BLACT_WH PF17778.1 gi|433592564|ref|YP_007282060.1| - 0.00018 21.4 0.2 0.00049 20.0 0.2 1.8 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain Lactamase_B_3 PF13483.6 gi|433592564|ref|YP_007282060.1| - 0.0023 17.9 0.0 0.0035 17.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Gluconate_2-dh3 PF13618.6 gi|433592564|ref|YP_007282060.1| - 0.12 12.6 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 DUF3029 PF11230.8 gi|433592564|ref|YP_007282060.1| - 0.13 10.6 0.0 0.95 7.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3029) Lactamase_B_6 PF16661.5 gi|433592564|ref|YP_007282060.1| - 0.15 11.5 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain CxxCxxCC PF03692.15 gi|433592565|ref|YP_007282061.1| - 7.4e-14 52.2 0.0 1.3e-13 51.4 0.0 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.17 gi|433592565|ref|YP_007282061.1| - 0.14 12.5 0.2 0.14 12.5 0.2 2.1 2 0 0 2 2 2 0 High potential iron-sulfur protein TRAM PF01938.20 gi|433592566|ref|YP_007282062.1| - 4.5e-15 55.4 3.4 9e-15 54.4 3.4 1.5 1 0 0 1 1 1 1 TRAM domain Radical_SAM PF04055.21 gi|433592567|ref|YP_007282063.1| - 1.1e-12 48.7 0.0 4.2e-12 46.7 0.0 2.1 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.23 gi|433592567|ref|YP_007282063.1| - 2.4e-06 27.1 0.1 7.1e-06 25.6 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|433592567|ref|YP_007282063.1| - 5.7e-05 23.3 0.0 0.00016 21.8 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|433592567|ref|YP_007282063.1| - 0.0035 17.9 0.0 0.0079 16.8 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|433592567|ref|YP_007282063.1| - 0.023 14.8 0.0 0.087 12.9 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif PsbU PF06514.11 gi|433592567|ref|YP_007282063.1| - 0.05 13.6 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_8 PF14716.6 gi|433592567|ref|YP_007282063.1| - 0.14 12.5 0.0 0.33 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain HTH_20 PF12840.7 gi|433592568|ref|YP_007282064.1| - 4.7e-17 61.8 8.3 1.6e-09 37.7 0.8 2.9 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|433592568|ref|YP_007282064.1| - 2e-16 59.5 0.1 2.8e-08 33.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|433592568|ref|YP_007282064.1| - 8.3e-14 50.9 0.0 3e-08 33.1 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|433592568|ref|YP_007282064.1| - 3.8e-12 45.9 0.1 3.6e-07 30.0 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.10 gi|433592568|ref|YP_007282064.1| - 2.9e-10 39.8 1.9 5e-07 29.4 0.4 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433592568|ref|YP_007282064.1| - 6.2e-09 35.6 0.9 1.7e-06 27.8 0.2 2.5 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|433592568|ref|YP_007282064.1| - 2.8e-07 30.6 0.0 6.6e-06 26.2 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|433592568|ref|YP_007282064.1| - 3.9e-07 29.9 0.3 0.0017 18.2 0.0 2.2 2 0 0 2 2 2 2 HTH domain TrmB PF01978.19 gi|433592568|ref|YP_007282064.1| - 5.5e-06 26.2 0.0 0.0002 21.1 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|433592568|ref|YP_007282064.1| - 2.7e-05 23.8 0.9 0.0069 16.1 0.1 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|433592568|ref|YP_007282064.1| - 2.7e-05 23.7 0.1 0.063 12.9 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|433592568|ref|YP_007282064.1| - 4.6e-05 23.3 0.1 0.1 12.6 0.1 2.4 2 0 0 2 2 2 2 Ribonuclease R winged-helix domain Penicillinase_R PF03965.16 gi|433592568|ref|YP_007282064.1| - 8.7e-05 22.8 0.0 0.25 11.7 0.0 2.2 2 0 0 2 2 2 2 Penicillinase repressor HTH_AsnC-type PF13404.6 gi|433592568|ref|YP_007282064.1| - 0.00034 20.4 0.1 0.0014 18.4 0.1 2.1 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain BLACT_WH PF17778.1 gi|433592568|ref|YP_007282064.1| - 0.0005 20.0 0.1 0.65 10.0 0.0 2.6 2 0 0 2 2 2 2 Beta-lactamase associated winged helix domain HTH_27 PF13463.6 gi|433592568|ref|YP_007282064.1| - 0.0008 19.9 0.4 0.015 15.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|433592568|ref|YP_007282064.1| - 0.0021 18.4 0.0 0.45 10.9 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_29 PF13551.6 gi|433592568|ref|YP_007282064.1| - 0.0026 17.7 0.1 2.8 8.0 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn helix DprA_WH PF17782.1 gi|433592568|ref|YP_007282064.1| - 0.0045 17.1 4.8 0.0088 16.1 0.8 3.3 2 0 0 2 2 2 1 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|433592568|ref|YP_007282064.1| - 0.0055 16.7 0.4 0.16 12.0 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain RP-C PF03428.13 gi|433592568|ref|YP_007282064.1| - 0.0064 16.2 0.2 2.5 7.7 0.0 2.3 2 0 0 2 2 2 1 Replication protein C N-terminal domain B-block_TFIIIC PF04182.12 gi|433592568|ref|YP_007282064.1| - 0.036 14.2 0.0 1.3 9.3 0.0 2.2 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Pilin_N PF07790.11 gi|433592568|ref|YP_007282064.1| - 0.1 13.5 1.1 2 9.4 0.2 2.5 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal LexA_DNA_bind PF01726.16 gi|433592568|ref|YP_007282064.1| - 0.1 12.4 0.0 1.7 8.5 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain RepL PF05732.11 gi|433592568|ref|YP_007282064.1| - 0.12 11.8 0.0 0.66 9.4 0.0 1.9 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) HTH_34 PF13601.6 gi|433592568|ref|YP_007282064.1| - 0.12 12.6 0.0 23 5.3 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|433592568|ref|YP_007282064.1| - 0.21 11.7 0.0 2.5 8.2 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF2752 PF10825.8 gi|433592569|ref|YP_007282065.1| - 0.033 14.2 0.4 0.046 13.8 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2752) DUF1178 PF06676.11 gi|433592569|ref|YP_007282065.1| - 0.2 12.1 0.2 0.21 12.0 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1178) HSP20 PF00011.21 gi|433592570|ref|YP_007282066.1| - 1.6e-06 28.2 0.0 3e-06 27.3 0.0 1.5 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|433592570|ref|YP_007282066.1| - 0.0032 17.0 0.0 0.0058 16.2 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA FKBP26_C PF18046.1 gi|433592570|ref|YP_007282066.1| - 0.054 13.6 0.0 0.097 12.8 0.0 1.4 1 0 0 1 1 1 0 FKBP26_C-terminal DnaJ_C PF01556.18 gi|433592570|ref|YP_007282066.1| - 0.15 12.2 0.0 0.88 9.6 0.0 1.9 1 1 1 2 2 2 0 DnaJ C terminal domain DAO PF01266.24 gi|433592571|ref|YP_007282067.1| - 3.8e-56 191.2 12.7 4.6e-56 190.9 12.7 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|433592571|ref|YP_007282067.1| - 5.5e-09 35.7 0.2 0.00053 19.3 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|433592571|ref|YP_007282067.1| - 1.7e-07 31.3 3.3 5.5e-07 29.7 3.3 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|433592571|ref|YP_007282067.1| - 1.4e-05 24.8 0.8 2.9e-05 23.8 0.8 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_2 PF00890.24 gi|433592571|ref|YP_007282067.1| - 0.00018 20.7 4.6 0.00018 20.7 4.6 1.8 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 gi|433592571|ref|YP_007282067.1| - 0.00019 21.4 0.1 0.00025 21.0 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|433592571|ref|YP_007282067.1| - 0.00021 21.7 0.0 0.00035 21.0 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|433592571|ref|YP_007282067.1| - 0.0005 19.4 0.9 0.00084 18.7 0.9 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|433592571|ref|YP_007282067.1| - 0.0016 17.7 0.9 0.0029 16.9 0.9 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|433592571|ref|YP_007282067.1| - 0.0041 17.6 1.3 0.0092 16.5 1.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|433592571|ref|YP_007282067.1| - 0.0046 16.2 1.2 0.0092 15.2 1.2 1.4 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|433592571|ref|YP_007282067.1| - 0.0061 16.0 1.2 0.011 15.2 1.2 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|433592571|ref|YP_007282067.1| - 0.0075 15.0 1.6 0.013 14.2 1.6 1.3 1 0 0 1 1 1 1 HI0933-like protein ThiF PF00899.21 gi|433592571|ref|YP_007282067.1| - 0.012 15.0 0.5 0.021 14.2 0.5 1.3 1 0 0 1 1 1 0 ThiF family GIDA PF01134.22 gi|433592571|ref|YP_007282067.1| - 0.02 14.0 2.7 0.03 13.4 2.7 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 gi|433592571|ref|YP_007282067.1| - 0.025 14.0 0.2 0.05 13.0 0.2 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|433592571|ref|YP_007282067.1| - 0.035 14.3 0.0 0.061 13.5 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|433592571|ref|YP_007282067.1| - 0.05 13.2 0.3 0.078 12.5 0.3 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|433592571|ref|YP_007282067.1| - 0.066 12.5 3.0 0.12 11.6 3.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|433592571|ref|YP_007282067.1| - 0.14 12.2 0.0 0.36 10.9 0.0 1.6 2 0 0 2 2 1 0 Shikimate / quinate 5-dehydrogenase DUF4233 PF14017.6 gi|433592572|ref|YP_007282068.1| - 0.061 13.7 7.6 0.087 13.2 7.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) DUF4381 PF14316.6 gi|433592572|ref|YP_007282068.1| - 3.6 7.8 4.6 0.73 10.1 0.2 1.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4381) CPP1-like PF11833.8 gi|433592572|ref|YP_007282068.1| - 7.9 6.1 7.7 9.6 5.8 7.7 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like zf-CDGSH PF09360.10 gi|433592573|ref|YP_007282069.1| - 1.4e-11 44.4 0.7 3.8e-11 43.0 0.1 1.9 2 0 0 2 2 2 1 Iron-binding zinc finger CDGSH type E1-E2_ATPase PF00122.20 gi|433592574|ref|YP_007282070.1| - 2.6e-44 150.9 0.5 5.3e-44 149.9 0.5 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433592574|ref|YP_007282070.1| - 1.1e-32 114.0 6.2 2.8e-32 112.7 6.2 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|433592574|ref|YP_007282070.1| - 1.1e-08 35.4 0.0 1.6e-07 31.7 0.0 2.6 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|433592574|ref|YP_007282070.1| - 0.00015 21.6 1.0 0.00025 20.9 1.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|433592574|ref|YP_007282070.1| - 0.78 9.8 4.9 1.2 9.3 0.3 3.3 1 1 1 2 2 2 0 HAD-hyrolase-like DsbD_2 PF13386.6 gi|433592575|ref|YP_007282071.1| - 1.4e-49 168.7 10.4 1.7e-49 168.5 10.4 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region SPC25 PF06703.11 gi|433592577|ref|YP_007282073.1| - 0.06 13.1 0.2 0.063 13.1 0.2 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) CrgA PF06781.12 gi|433592577|ref|YP_007282073.1| - 3.1 7.9 5.7 4.5 7.4 5.7 1.5 1 1 0 1 1 1 0 Cell division protein CrgA Cupredoxin_1 PF13473.6 gi|433592578|ref|YP_007282074.1| - 1.5e-11 44.3 0.4 1.4e-10 41.2 0.0 2.3 1 1 1 2 2 2 1 Cupredoxin-like domain COX2 PF00116.20 gi|433592578|ref|YP_007282074.1| - 2.2e-10 40.5 0.1 4.4e-10 39.5 0.1 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Big_3_5 PF16640.5 gi|433592578|ref|YP_007282074.1| - 0.0017 18.5 3.2 0.01 16.0 0.6 2.4 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) fn3_5 PF06280.12 gi|433592578|ref|YP_007282074.1| - 0.026 15.2 3.1 3.6 8.3 0.2 2.6 2 2 0 2 2 2 0 Fn3-like domain COX2-transmemb PF09125.10 gi|433592578|ref|YP_007282074.1| - 0.056 13.2 0.4 0.096 12.5 0.4 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane KCT2 PF17818.1 gi|433592578|ref|YP_007282074.1| - 0.7 10.0 4.4 1.3 9.2 4.4 1.5 1 0 0 1 1 1 0 Keratinocyte-associated gene product COX1 PF00115.20 gi|433592579|ref|YP_007282075.1| - 8.3e-90 301.7 62.6 8.3e-90 301.7 62.6 1.9 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I HupE_UreJ PF04955.12 gi|433592580|ref|YP_007282076.1| - 0.017 14.6 2.6 0.018 14.5 2.6 1.0 1 0 0 1 1 1 0 HupE / UreJ protein FixQ PF05545.11 gi|433592580|ref|YP_007282076.1| - 0.19 11.7 0.0 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ NTP_transferase PF00483.23 gi|433592581|ref|YP_007282077.1| - 2.1e-35 122.5 0.0 2.8e-35 122.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|433592581|ref|YP_007282077.1| - 2.1e-06 28.2 2.0 2.3e-05 24.8 2.0 2.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.18 gi|433592581|ref|YP_007282077.1| - 0.02 14.8 0.1 0.034 14.0 0.1 1.3 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase DUF883 PF05957.13 gi|433592582|ref|YP_007282078.1| - 0.0038 17.8 2.8 0.0066 17.0 2.8 1.4 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) Alanine_zipper PF11839.8 gi|433592582|ref|YP_007282078.1| - 0.018 15.4 0.9 0.032 14.6 0.8 1.5 1 1 0 1 1 1 0 Alanine-zipper, major outer membrane lipoprotein TerB PF05099.13 gi|433592582|ref|YP_007282078.1| - 0.037 14.0 1.7 0.041 13.8 1.2 1.3 1 1 0 1 1 1 0 Tellurite resistance protein TerB DHDPS PF00701.22 gi|433592583|ref|YP_007282079.1| - 1.4e-34 119.2 0.0 4e-34 117.7 0.0 1.6 1 1 1 2 2 2 1 Dihydrodipicolinate synthetase family AP_endonuc_2 PF01261.24 gi|433592583|ref|YP_007282079.1| - 0.044 13.2 0.0 0.071 12.5 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel tRNA_anti-codon PF01336.25 gi|433592584|ref|YP_007282080.1| - 0.017 15.1 0.0 0.065 13.2 0.0 2.0 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain RMI1_C PF16099.5 gi|433592584|ref|YP_007282080.1| - 0.034 14.0 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 Recq-mediated genome instability protein 1, C-terminal OB-fold Notch PF00066.17 gi|433592584|ref|YP_007282080.1| - 0.12 12.9 0.4 0.2 12.2 0.4 1.3 1 0 0 1 1 1 0 LNR domain MTHFR_C PF12225.8 gi|433592584|ref|YP_007282080.1| - 0.15 11.8 0.1 0.24 11.1 0.1 1.3 1 0 0 1 1 1 0 Methylene-tetrahydrofolate reductase C terminal Abhydrolase_2 PF02230.16 gi|433592586|ref|YP_007282082.1| - 3.1e-19 69.6 0.0 2.2e-18 66.9 0.0 1.9 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 gi|433592586|ref|YP_007282082.1| - 1.2e-07 31.2 0.1 0.00036 19.9 0.1 2.4 1 1 1 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|433592586|ref|YP_007282082.1| - 5.8e-07 29.3 0.0 7e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Esterase_phd PF10503.9 gi|433592586|ref|YP_007282082.1| - 3e-05 23.6 2.5 5.2e-05 22.9 2.5 1.5 1 1 0 1 1 1 1 Esterase PHB depolymerase Peptidase_S9 PF00326.21 gi|433592586|ref|YP_007282082.1| - 0.00075 19.0 0.3 0.67 9.4 0.0 2.6 2 1 0 3 3 3 2 Prolyl oligopeptidase family Esterase PF00756.20 gi|433592586|ref|YP_007282082.1| - 0.0014 18.4 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Abhydrolase_6 PF12697.7 gi|433592586|ref|YP_007282082.1| - 0.0025 18.5 9.0 0.0054 17.4 9.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family FSH1 PF03959.13 gi|433592586|ref|YP_007282082.1| - 0.0069 16.1 0.0 0.016 14.8 0.0 1.5 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.13 gi|433592586|ref|YP_007282082.1| - 0.034 14.0 1.1 0.099 12.5 0.3 1.9 1 1 1 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 gi|433592586|ref|YP_007282082.1| - 0.036 13.7 0.0 0.48 10.0 0.0 2.2 1 1 1 2 2 2 0 alpha/beta hydrolase fold PE-PPE PF08237.11 gi|433592586|ref|YP_007282082.1| - 0.096 12.2 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 PE-PPE domain Thioesterase PF00975.20 gi|433592586|ref|YP_007282082.1| - 0.13 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain Glyoxalase PF00903.25 gi|433592587|ref|YP_007282083.1| - 4.9e-25 88.2 1.4 4.4e-13 49.5 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|433592587|ref|YP_007282083.1| - 5.6e-05 23.4 0.9 0.53 10.6 0.0 3.2 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RHH_1 PF01402.21 gi|433592588|ref|YP_007282084.1| - 3.1e-05 23.7 0.1 3.1e-05 23.7 0.1 2.7 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.8 gi|433592588|ref|YP_007282084.1| - 0.0024 17.4 0.1 0.0051 16.4 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3562) CopG_antitoxin PF12441.8 gi|433592588|ref|YP_007282084.1| - 0.0059 17.1 0.3 0.014 15.9 0.0 1.8 2 1 0 2 2 2 1 CopG antitoxin of type II toxin-antitoxin system DUF641 PF04859.12 gi|433592588|ref|YP_007282084.1| - 0.04 14.3 0.8 0.054 13.8 0.3 1.5 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) Lipase_GDSL_2 PF13472.6 gi|433592588|ref|YP_007282084.1| - 0.13 12.6 0.1 0.16 12.3 0.1 1.1 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family LtuB PF17455.2 gi|433592588|ref|YP_007282084.1| - 0.24 12.0 1.5 0.39 11.4 0.3 1.8 2 0 0 2 2 2 0 Late transcription unit B HATPase_c PF02518.26 gi|433592591|ref|YP_007282087.1| - 6e-25 87.9 0.0 1.5e-24 86.6 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|433592591|ref|YP_007282087.1| - 1.4e-24 86.4 0.7 1.3e-12 47.9 0.0 2.7 2 0 0 2 2 2 2 PAS fold GAF PF01590.26 gi|433592591|ref|YP_007282087.1| - 2.2e-12 47.7 0.0 6.2e-12 46.3 0.0 1.8 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|433592591|ref|YP_007282087.1| - 9.2e-12 44.8 0.1 9.2e-12 44.8 0.1 3.1 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|433592591|ref|YP_007282087.1| - 1.8e-10 41.3 0.1 1.3e-09 38.5 0.1 2.5 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|433592591|ref|YP_007282087.1| - 3.5e-09 37.1 0.0 8.8e-09 35.8 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 gi|433592591|ref|YP_007282087.1| - 1.5e-07 31.6 0.0 0.0068 16.6 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|433592591|ref|YP_007282087.1| - 0.0043 17.0 1.7 0.0063 16.5 0.1 2.1 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|433592591|ref|YP_007282087.1| - 0.0069 16.3 0.0 0.026 14.4 0.0 1.9 2 0 0 2 2 2 1 GHKL domain ApoLp-III PF07464.11 gi|433592591|ref|YP_007282087.1| - 0.037 14.1 5.8 2.4 8.3 0.1 2.9 3 0 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) PAS PF00989.25 gi|433592591|ref|YP_007282087.1| - 0.049 13.6 0.0 0.77 9.8 0.0 2.4 2 0 0 2 2 2 0 PAS fold PAS_8 PF13188.7 gi|433592591|ref|YP_007282087.1| - 0.11 12.6 0.0 1.5 9.0 0.0 2.8 2 0 0 2 2 2 0 PAS domain Noelin-1 PF12308.8 gi|433592591|ref|YP_007282087.1| - 0.19 11.7 0.5 0.82 9.7 0.0 2.2 2 0 0 2 2 2 0 Neurogenesis glycoprotein DivIC PF04977.15 gi|433592591|ref|YP_007282087.1| - 0.4 10.5 5.1 0.26 11.1 1.4 2.5 3 0 0 3 3 3 0 Septum formation initiator Enkurin PF13864.6 gi|433592591|ref|YP_007282087.1| - 0.51 10.8 5.8 0.37 11.3 0.6 2.9 3 0 0 3 3 3 0 Calmodulin-binding CHU_C PF13585.6 gi|433592592|ref|YP_007282088.1| - 0.15 12.1 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 C-terminal domain of CHU protein family Abhydrolase_1 PF00561.20 gi|433592593|ref|YP_007282089.1| - 1.4e-23 83.9 0.0 2.8e-23 82.9 0.0 1.5 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433592593|ref|YP_007282089.1| - 4.1e-18 66.8 9.6 4.9e-18 66.5 9.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433592593|ref|YP_007282089.1| - 1.2e-07 31.3 0.0 1.6e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 EHN PF06441.12 gi|433592593|ref|YP_007282089.1| - 0.00083 19.7 0.0 0.0016 18.8 0.0 1.4 1 0 0 1 1 1 1 Epoxide hydrolase N terminus DUF2238 PF09997.9 gi|433592594|ref|YP_007282090.1| - 0.0016 18.2 14.0 0.0046 16.8 2.3 3.6 3 1 0 3 3 3 2 Predicted membrane protein (DUF2238) Aldo_ket_red PF00248.21 gi|433592595|ref|YP_007282091.1| - 1.4e-60 205.0 0.0 1.3e-58 198.5 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DpaA_N PF16924.5 gi|433592595|ref|YP_007282091.1| - 0.056 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain zinc_ribbon_2 PF13240.6 gi|433592596|ref|YP_007282092.1| - 4.5e-05 23.0 1.9 6.3e-05 22.5 1.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|433592596|ref|YP_007282092.1| - 0.001 19.0 0.6 0.0012 18.8 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|433592596|ref|YP_007282092.1| - 0.0023 18.7 0.4 0.0025 18.5 0.4 1.1 1 0 0 1 1 1 1 zinc-ribbon family zf-RanBP PF00641.18 gi|433592596|ref|YP_007282092.1| - 0.12 11.8 1.6 0.19 11.1 1.6 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others DUF2688 PF10892.8 gi|433592596|ref|YP_007282092.1| - 1.9 8.0 6.2 7.1 6.2 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) LtrA PF06772.11 gi|433592597|ref|YP_007282093.1| - 0.00074 18.8 0.9 0.00097 18.5 0.9 1.3 1 0 0 1 1 1 1 Bacterial low temperature requirement A protein (LtrA) DUF5360 PF17314.2 gi|433592597|ref|YP_007282093.1| - 0.018 15.1 1.4 0.027 14.5 1.4 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5360) DUF3630 PF12305.8 gi|433592597|ref|YP_007282093.1| - 0.16 12.1 0.1 0.29 11.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3630) DUF3810 PF12725.7 gi|433592597|ref|YP_007282093.1| - 0.25 10.7 0.1 0.33 10.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) DUF202 PF02656.15 gi|433592597|ref|YP_007282093.1| - 0.26 11.8 6.5 0.3 11.6 1.5 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF202) FixS PF03597.15 gi|433592597|ref|YP_007282093.1| - 3.2 7.5 9.0 15 5.4 0.0 2.8 3 0 0 3 3 3 0 Cytochrome oxidase maturation protein cbb3-type Gram_pos_anchor PF00746.21 gi|433592597|ref|YP_007282093.1| - 8.4 6.4 5.9 15 5.6 0.0 2.4 2 0 0 2 2 2 0 LPXTG cell wall anchor motif HTH_3 PF01381.22 gi|433592598|ref|YP_007282094.1| - 1.2e-16 60.5 0.0 1.5e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|433592598|ref|YP_007282094.1| - 1.7e-10 41.1 0.0 2e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|433592598|ref|YP_007282094.1| - 3e-08 34.0 0.0 3.7e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 gi|433592598|ref|YP_007282094.1| - 3.3e-08 33.4 0.0 4e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|433592598|ref|YP_007282094.1| - 1.3e-05 24.6 0.0 1.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|433592598|ref|YP_007282094.1| - 0.0003 20.6 0.0 0.00059 19.7 0.0 1.5 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|433592598|ref|YP_007282094.1| - 0.00072 19.0 0.0 0.0011 18.4 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|433592598|ref|YP_007282094.1| - 0.00084 19.1 0.1 0.0013 18.5 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_25 PF13413.6 gi|433592598|ref|YP_007282094.1| - 0.00088 19.1 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433592598|ref|YP_007282094.1| - 0.00088 19.2 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|433592598|ref|YP_007282094.1| - 0.011 15.6 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Homeodomain-like domain YdaS_antitoxin PF15943.5 gi|433592598|ref|YP_007282094.1| - 0.011 15.6 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT GntR PF00392.21 gi|433592598|ref|YP_007282094.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.4 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|433592598|ref|YP_007282094.1| - 0.02 14.7 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.6 gi|433592598|ref|YP_007282094.1| - 0.033 13.9 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|433592598|ref|YP_007282094.1| - 0.038 13.4 0.5 0.055 12.9 0.1 1.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DUF1323 PF07037.11 gi|433592598|ref|YP_007282094.1| - 0.038 14.4 0.0 0.05 14.0 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_10 PF04967.12 gi|433592598|ref|YP_007282094.1| - 0.053 13.3 0.0 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 HTH DNA binding domain HTH_7 PF02796.15 gi|433592598|ref|YP_007282094.1| - 0.089 12.9 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|433592598|ref|YP_007282094.1| - 0.16 12.0 0.1 0.2 11.7 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Phage_CI_repr PF07022.13 gi|433592598|ref|YP_007282094.1| - 0.18 11.9 0.0 0.24 11.5 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DUF2892 PF11127.8 gi|433592599|ref|YP_007282095.1| - 7.9e-11 41.8 1.9 8.3e-11 41.8 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF4064 PF13273.6 gi|433592599|ref|YP_007282095.1| - 0.099 12.9 0.7 0.13 12.6 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) DUF192 PF02643.15 gi|433592601|ref|YP_007282097.1| - 1.3e-29 102.2 0.0 1.7e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 SecG PF03840.14 gi|433592601|ref|YP_007282097.1| - 0.45 10.6 2.4 0.72 10.0 2.4 1.3 1 0 0 1 1 1 0 Preprotein translocase SecG subunit CDP-OH_P_tran_2 PF08009.11 gi|433592601|ref|YP_007282097.1| - 0.48 10.4 3.9 0.84 9.6 3.9 1.4 1 0 0 1 1 1 0 CDP-alcohol phosphatidyltransferase 2 ABC_membrane PF00664.23 gi|433592602|ref|YP_007282098.1| - 4.8e-42 144.5 1.2 5.9e-42 144.2 1.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|433592602|ref|YP_007282098.1| - 4.2e-37 127.7 0.0 8.2e-37 126.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|433592602|ref|YP_007282098.1| - 5e-05 23.6 0.9 0.0004 20.7 0.2 2.6 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|433592602|ref|YP_007282098.1| - 0.00022 21.2 0.0 0.00041 20.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_21 PF13304.6 gi|433592602|ref|YP_007282098.1| - 0.0018 18.1 0.0 0.0056 16.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_24 PF13479.6 gi|433592602|ref|YP_007282098.1| - 0.0026 17.5 0.0 0.0044 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|433592602|ref|YP_007282098.1| - 0.0028 18.2 0.0 0.0082 16.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|433592602|ref|YP_007282098.1| - 0.0052 16.5 0.1 0.014 15.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|433592602|ref|YP_007282098.1| - 0.0058 16.1 1.1 0.15 11.5 1.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|433592602|ref|YP_007282098.1| - 0.0086 15.8 0.1 0.03 14.1 0.1 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|433592602|ref|YP_007282098.1| - 0.0097 16.3 0.6 0.024 15.0 0.6 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|433592602|ref|YP_007282098.1| - 0.039 14.4 0.0 0.074 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|433592602|ref|YP_007282098.1| - 0.095 11.5 0.1 0.18 10.6 0.1 1.4 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_5 PF07728.14 gi|433592602|ref|YP_007282098.1| - 0.1 12.6 0.3 0.92 9.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Guanylate_kin PF00625.21 gi|433592602|ref|YP_007282098.1| - 0.11 12.1 0.1 1.2 8.7 0.1 2.6 2 1 0 2 2 2 0 Guanylate kinase NTPase_1 PF03266.15 gi|433592602|ref|YP_007282098.1| - 0.14 12.0 0.1 3 7.7 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_7 PF12775.7 gi|433592602|ref|YP_007282098.1| - 0.16 11.5 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|433592602|ref|YP_007282098.1| - 0.16 11.2 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF2207 PF09972.9 gi|433592602|ref|YP_007282098.1| - 3.1 6.5 8.1 21 3.7 0.0 2.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) PAP2 PF01569.21 gi|433592604|ref|YP_007282100.1| - 4.8e-20 71.7 4.7 4.8e-20 71.7 4.7 2.0 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|433592604|ref|YP_007282100.1| - 2.6e-08 33.8 6.2 2.6e-08 33.8 6.2 1.8 2 0 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|433592604|ref|YP_007282100.1| - 0.013 16.0 0.2 0.032 14.8 0.2 1.6 1 0 0 1 1 1 0 PAP2 superfamily C-terminal Creatininase PF02633.14 gi|433592605|ref|YP_007282101.1| - 4.6e-65 219.4 2.3 5.5e-65 219.2 2.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Phe_tRNA-synt_N PF02912.18 gi|433592606|ref|YP_007282102.1| - 0.11 12.4 0.1 0.41 10.6 0.0 1.9 2 1 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain DUF2524 PF10732.9 gi|433592606|ref|YP_007282102.1| - 0.15 12.4 0.1 0.49 10.7 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2524) DHNA PF04038.12 gi|433592607|ref|YP_007282103.1| - 4.8e-40 136.4 0.0 5.4e-40 136.3 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Epimerase PF01370.21 gi|433592608|ref|YP_007282104.1| - 5.5e-26 91.5 0.0 7.2e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|433592608|ref|YP_007282104.1| - 4.3e-15 55.5 0.0 5.8e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|433592608|ref|YP_007282104.1| - 7.4e-14 51.5 0.0 2.1e-13 50.1 0.0 1.6 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|433592608|ref|YP_007282104.1| - 4.2e-13 49.1 0.7 3.5e-09 36.2 0.3 2.7 2 1 0 3 3 3 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|433592608|ref|YP_007282104.1| - 4.6e-11 42.9 0.0 7.5e-11 42.3 0.0 1.3 1 1 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|433592608|ref|YP_007282104.1| - 1.8e-10 40.8 0.0 5.8e-10 39.1 0.0 1.9 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|433592608|ref|YP_007282104.1| - 1.2e-06 27.9 0.0 1.8e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|433592608|ref|YP_007282104.1| - 2.8e-05 23.8 0.0 4.8e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family AP_endonuc_2 PF01261.24 gi|433592608|ref|YP_007282104.1| - 0.0086 15.5 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Aldo_ket_red PF00248.21 gi|433592609|ref|YP_007282105.1| - 4.6e-72 242.7 0.0 5.2e-72 242.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Bac_luciferase PF00296.20 gi|433592610|ref|YP_007282106.1| - 6.2e-55 186.8 4.3 7.2e-55 186.6 4.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PEP_mutase PF13714.6 gi|433592610|ref|YP_007282106.1| - 0.026 14.0 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase DUF309 PF03745.14 gi|433592611|ref|YP_007282107.1| - 7.3e-19 67.2 3.1 1.1e-18 66.6 3.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Peptidase_M29 PF02073.15 gi|433592612|ref|YP_007282108.1| - 9.9e-61 205.7 0.0 1.2e-60 205.4 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) 3HCDH_RFF PF18321.1 gi|433592612|ref|YP_007282108.1| - 1.2 9.7 4.3 0.98 9.9 0.1 3.0 4 0 0 4 4 4 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Vut_1 PF02592.15 gi|433592613|ref|YP_007282109.1| - 2.1e-50 170.9 5.5 2.1e-50 170.9 5.5 1.5 2 0 0 2 2 2 1 Putative vitamin uptake transporter CSD PF00313.22 gi|433592614|ref|YP_007282110.1| - 1e-18 66.9 0.1 1.1e-18 66.8 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|433592614|ref|YP_007282110.1| - 0.038 13.7 3.1 0.055 13.2 3.1 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|433592614|ref|YP_007282110.1| - 0.088 12.8 0.5 0.11 12.4 0.5 1.4 1 1 0 1 1 1 0 S1-like PadR PF03551.14 gi|433592615|ref|YP_007282111.1| - 2.9e-13 49.6 0.2 3.4e-13 49.3 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|433592615|ref|YP_007282111.1| - 0.012 15.5 0.1 0.016 15.2 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4358 PF14270.6 gi|433592615|ref|YP_007282111.1| - 0.032 14.5 0.0 0.052 13.8 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4358) FUR PF01475.19 gi|433592615|ref|YP_007282111.1| - 0.13 12.5 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Lactamase_B_2 PF12706.7 gi|433592616|ref|YP_007282112.1| - 3e-09 36.7 0.6 9.3e-07 28.6 0.2 2.5 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|433592616|ref|YP_007282112.1| - 9.4e-08 32.3 1.3 9.4e-08 32.3 1.3 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|433592616|ref|YP_007282112.1| - 6.9e-05 22.7 1.0 0.0019 18.1 0.1 3.0 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain PTPS_related PF10131.9 gi|433592617|ref|YP_007282113.1| - 0.19 10.0 12.1 0.028 12.8 8.0 1.6 1 1 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein MoCF_biosynth PF00994.24 gi|433592619|ref|YP_007282115.1| - 2e-30 105.3 0.0 2.5e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain tRNA_NucTransf2 PF09249.11 gi|433592620|ref|YP_007282116.1| - 1.2e-45 154.4 0.0 2.2e-45 153.5 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|433592620|ref|YP_007282116.1| - 1e-11 45.0 0.0 2.1e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|433592620|ref|YP_007282116.1| - 0.0007 19.8 0.0 0.0048 17.1 0.0 2.0 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Hist_deacetyl PF00850.19 gi|433592621|ref|YP_007282117.1| - 2.3e-81 273.7 0.0 3.3e-81 273.1 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain CBFD_NFYB_HMF PF00808.23 gi|433592622|ref|YP_007282118.1| - 5.8e-26 90.6 0.3 6.3e-13 48.8 0.1 2.1 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|433592622|ref|YP_007282118.1| - 2.4e-15 57.0 0.9 3e-11 43.8 0.2 2.0 1 1 1 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|433592622|ref|YP_007282118.1| - 4.1e-06 26.9 0.3 0.0004 20.5 0.1 2.1 2 0 0 2 2 2 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|433592622|ref|YP_007282118.1| - 0.00057 20.2 0.2 0.0015 18.9 0.2 1.7 1 0 0 1 1 1 1 CENP-S protein DUF1931 PF09123.11 gi|433592622|ref|YP_007282118.1| - 0.041 14.0 2.6 0.22 11.6 2.6 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF1931) TAF PF02969.17 gi|433592622|ref|YP_007282118.1| - 0.11 12.7 2.6 0.68 10.1 0.4 2.3 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) TFIID_20kDa PF03847.13 gi|433592622|ref|YP_007282118.1| - 0.17 12.4 1.9 0.19 12.3 0.5 1.8 2 1 1 3 3 3 0 Transcription initiation factor TFIID subunit A tRNA_anti-codon PF01336.25 gi|433592623|ref|YP_007282119.1| - 1.6e-29 101.7 6.7 4.3e-12 45.9 0.2 3.6 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|433592623|ref|YP_007282119.1| - 4.5e-13 49.0 3.0 6.2e-06 26.1 0.1 3.3 3 0 0 3 3 3 3 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|433592623|ref|YP_007282119.1| - 1.5e-08 34.6 0.1 0.019 14.7 0.0 3.2 3 0 0 3 3 3 2 Cell division control protein 24, OB domain 3 Rep_fac-A_C PF08646.10 gi|433592623|ref|YP_007282119.1| - 0.0084 15.9 0.0 5.1 6.8 0.0 3.1 3 0 0 3 3 3 1 Replication factor-A C terminal domain DUF4539 PF15072.6 gi|433592623|ref|YP_007282119.1| - 0.011 15.8 0.2 0.62 10.1 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4539) SSB PF00436.25 gi|433592623|ref|YP_007282119.1| - 0.021 14.9 0.1 33 4.6 0.0 3.4 3 0 0 3 3 3 0 Single-strand binding protein family tRNA_anti_2 PF13742.6 gi|433592623|ref|YP_007282119.1| - 0.03 14.5 0.1 17 5.7 0.0 3.0 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain POT1PC PF16686.5 gi|433592623|ref|YP_007282119.1| - 0.066 13.1 0.0 7.2 6.5 0.0 2.8 2 0 0 2 2 2 0 ssDNA-binding domain of telomere protection protein TGS PF02824.21 gi|433592623|ref|YP_007282119.1| - 0.078 13.0 1.4 4.7 7.3 0.1 3.2 3 0 0 3 3 3 0 TGS domain NrsF PF06532.11 gi|433592624|ref|YP_007282120.1| - 0.045 13.5 4.5 0.054 13.2 4.5 1.2 1 0 0 1 1 1 0 Negative regulator of sigma F TssN PF17555.2 gi|433592624|ref|YP_007282120.1| - 0.74 9.1 2.1 0.81 9.0 2.1 1.2 1 0 0 1 1 1 0 Type VI secretion system, TssN AMMECR1 PF01871.17 gi|433592625|ref|YP_007282121.1| - 1.6e-39 135.2 0.0 1.9e-39 135.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 QRPTase_C PF01729.19 gi|433592626|ref|YP_007282122.1| - 3e-16 59.7 0.0 4.1e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|433592626|ref|YP_007282122.1| - 0.0052 16.8 0.0 0.02 15.0 0.0 2.0 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|433592626|ref|YP_007282122.1| - 0.1 13.0 0.0 0.21 12.0 0.0 1.5 1 1 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DUF4157 PF13699.6 gi|433592627|ref|YP_007282123.1| - 0.052 13.8 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Peptidase_M76 PF09768.9 gi|433592627|ref|YP_007282123.1| - 0.13 12.0 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family LPAM_1 PF08139.12 gi|433592627|ref|YP_007282123.1| - 0.41 11.2 1.6 0.73 10.4 1.6 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Peptidase_M76 PF09768.9 gi|433592628|ref|YP_007282124.1| - 0.015 15.0 0.0 0.025 14.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family Peptidase_M78 PF06114.13 gi|433592628|ref|YP_007282124.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 IrrE N-terminal-like domain Isochorismatase PF00857.20 gi|433592629|ref|YP_007282125.1| - 1.9e-50 171.4 0.0 2.1e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DUF4407 PF14362.6 gi|433592631|ref|YP_007282127.1| - 3.9 6.8 5.6 4.1 6.7 5.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) 4HBT PF03061.22 gi|433592632|ref|YP_007282128.1| - 2.2e-13 50.4 0.2 5e-13 49.2 0.1 1.6 2 0 0 2 2 2 1 Thioesterase superfamily DUF4442 PF14539.6 gi|433592632|ref|YP_007282128.1| - 0.00028 21.0 0.0 0.00046 20.3 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) Peptidase_M23 PF01551.22 gi|433592633|ref|YP_007282129.1| - 0.0092 16.2 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M23 BPL_LplA_LipB PF03099.19 gi|433592634|ref|YP_007282130.1| - 0.012 15.5 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family QRPTase_C PF01729.19 gi|433592637|ref|YP_007282133.1| - 2.6e-54 183.5 1.7 3.3e-54 183.2 1.7 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|433592637|ref|YP_007282133.1| - 2e-20 72.6 0.1 3.7e-20 71.8 0.1 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain MFS_1 PF07690.16 gi|433592638|ref|YP_007282134.1| - 2.5e-37 128.6 65.2 2.2e-26 92.6 38.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|433592638|ref|YP_007282134.1| - 1.2e-10 40.8 7.9 1.2e-10 40.8 7.9 2.1 1 1 1 2 2 2 2 MFS_1 like family RepL PF05732.11 gi|433592638|ref|YP_007282134.1| - 0.23 10.9 0.0 0.43 10.0 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) FAD_binding_2 PF00890.24 gi|433592639|ref|YP_007282135.1| - 4.5e-77 259.9 5.4 5.4e-77 259.6 5.4 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|433592639|ref|YP_007282135.1| - 1.6e-12 47.3 0.3 2.5e-06 26.9 0.2 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|433592639|ref|YP_007282135.1| - 2.2e-10 40.2 0.3 1e-06 28.1 0.4 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.24 gi|433592639|ref|YP_007282135.1| - 3.7e-08 33.3 3.7 3.2e-07 30.3 1.4 2.8 1 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|433592639|ref|YP_007282135.1| - 4e-08 33.0 3.9 1.6e-07 31.1 1.3 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|433592639|ref|YP_007282135.1| - 3.5e-06 26.0 0.1 0.0034 16.1 0.3 2.2 2 0 0 2 2 2 2 HI0933-like protein Succ_DH_flav_C PF02910.20 gi|433592639|ref|YP_007282135.1| - 0.00016 21.6 0.0 0.00041 20.3 0.0 1.6 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term NAD_binding_8 PF13450.6 gi|433592639|ref|YP_007282135.1| - 0.0004 20.5 0.2 0.0011 19.1 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|433592639|ref|YP_007282135.1| - 0.0006 19.2 0.2 0.0012 18.1 0.2 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|433592639|ref|YP_007282135.1| - 0.0043 16.4 0.1 0.0093 15.2 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|433592639|ref|YP_007282135.1| - 0.059 12.4 0.4 0.12 11.4 0.4 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|433592639|ref|YP_007282135.1| - 0.12 11.6 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NadA PF02445.16 gi|433592640|ref|YP_007282136.1| - 1e-103 346.6 0.0 1.2e-103 346.4 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein GFO_IDH_MocA PF01408.22 gi|433592641|ref|YP_007282137.1| - 1.1e-25 90.7 0.1 1.8e-25 90.1 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|433592641|ref|YP_007282137.1| - 2.2e-08 34.1 0.0 4e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|433592641|ref|YP_007282137.1| - 0.0066 16.9 0.0 0.018 15.5 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Bac_luciferase PF00296.20 gi|433592642|ref|YP_007282138.1| - 2e-67 227.9 13.5 2.5e-67 227.6 13.5 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase HMG-CoA_red PF00368.18 gi|433592644|ref|YP_007282140.1| - 5.2e-128 427.1 6.7 5.9e-128 427.0 6.7 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase HisKA_4TM PF16926.5 gi|433592645|ref|YP_007282141.1| - 1.3e-84 281.7 7.7 2e-84 281.1 7.7 1.3 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|433592645|ref|YP_007282141.1| - 6.6e-15 55.6 0.0 1.2e-14 54.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|433592645|ref|YP_007282141.1| - 8.8e-08 32.2 0.1 1.7e-07 31.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|433592645|ref|YP_007282141.1| - 0.0002 21.3 0.0 0.00044 20.2 0.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|433592645|ref|YP_007282141.1| - 0.00022 21.1 0.0 0.0004 20.3 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|433592645|ref|YP_007282141.1| - 0.025 14.4 0.1 0.043 13.6 0.1 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|433592645|ref|YP_007282141.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain GntR PF00392.21 gi|433592646|ref|YP_007282142.1| - 0.041 13.5 0.2 0.17 11.6 0.2 2.1 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family HypA PF01155.19 gi|433592646|ref|YP_007282142.1| - 0.057 13.4 0.9 0.25 11.4 0.7 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rrf2 PF02082.20 gi|433592646|ref|YP_007282142.1| - 0.059 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TerY_C PF15616.6 gi|433592646|ref|YP_007282142.1| - 0.082 13.0 0.3 0.12 12.5 0.3 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain Zn_Tnp_IS91 PF14319.6 gi|433592646|ref|YP_007282142.1| - 0.11 12.6 0.6 0.17 11.9 0.6 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain RNA_POL_M_15KD PF02150.16 gi|433592646|ref|YP_007282142.1| - 0.16 11.8 1.0 0.33 10.9 1.0 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-CSL PF05207.13 gi|433592646|ref|YP_007282142.1| - 0.2 11.4 2.2 4 7.2 0.4 2.5 2 0 0 2 2 2 0 CSL zinc finger zinc_ribbon_4 PF13717.6 gi|433592646|ref|YP_007282142.1| - 0.24 11.4 1.5 23 5.0 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|433592646|ref|YP_007282142.1| - 0.24 11.3 2.8 0.93 9.4 0.5 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.10 gi|433592646|ref|YP_007282142.1| - 0.49 10.6 2.5 1.2 9.3 2.5 1.7 1 1 0 1 1 1 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|433592646|ref|YP_007282142.1| - 2.1 8.3 4.2 0.66 9.9 0.2 2.2 3 0 0 3 3 3 0 Putative transposase DNA-binding domain Multi_Drug_Res PF00893.19 gi|433592647|ref|YP_007282143.1| - 2.6e-27 95.3 2.1 3.4e-27 94.9 2.1 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|433592647|ref|YP_007282143.1| - 0.00044 20.4 7.9 0.0005 20.3 7.9 1.2 1 0 0 1 1 1 1 EamA-like transporter family DUF3188 PF11384.8 gi|433592647|ref|YP_007282143.1| - 4.6 7.0 10.3 16 5.3 5.9 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3188) Cupin_2 PF07883.11 gi|433592648|ref|YP_007282144.1| - 1.3e-16 60.1 0.8 1.7e-16 59.7 0.8 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|433592648|ref|YP_007282144.1| - 0.00016 21.3 0.0 0.00017 21.2 0.0 1.1 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|433592648|ref|YP_007282144.1| - 0.00063 19.7 0.4 0.00089 19.2 0.4 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain ARD PF03079.14 gi|433592648|ref|YP_007282144.1| - 0.0048 17.1 0.0 0.0057 16.9 0.0 1.1 1 0 0 1 1 1 1 ARD/ARD' family Acetyltransf_10 PF13673.7 gi|433592650|ref|YP_007282146.1| - 8.9e-26 90.3 0.1 1e-25 90.1 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|433592650|ref|YP_007282146.1| - 1.1e-14 54.7 0.1 1.3e-14 54.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|433592650|ref|YP_007282146.1| - 6e-12 45.8 0.2 1.2e-11 44.8 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.6 gi|433592650|ref|YP_007282146.1| - 1.3e-05 25.8 0.5 2.8e-05 24.8 0.3 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433592650|ref|YP_007282146.1| - 0.00039 20.3 0.0 0.00056 19.8 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|433592650|ref|YP_007282146.1| - 0.00047 20.2 0.2 0.0022 18.1 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|433592650|ref|YP_007282146.1| - 0.0041 17.3 0.0 0.0049 17.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|433592650|ref|YP_007282146.1| - 0.056 13.2 0.1 0.077 12.7 0.1 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ DUF3674 PF12426.8 gi|433592650|ref|YP_007282146.1| - 0.12 12.5 0.0 18 5.4 0.0 2.3 2 0 0 2 2 2 0 RNA dependent RNA polymerase Iso_dh PF00180.20 gi|433592651|ref|YP_007282147.1| - 7.3e-112 374.0 0.0 8.9e-112 373.7 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Croc_4 PF17691.1 gi|433592652|ref|YP_007282148.1| - 0.06 13.4 0.3 0.087 12.9 0.3 1.3 1 0 0 1 1 1 0 Contingent replication of cDNA 4 Peptidase_M24 PF00557.24 gi|433592653|ref|YP_007282149.1| - 4.1e-42 144.2 1.2 6.1e-42 143.7 1.2 1.3 1 1 0 1 1 1 1 Metallopeptidase family M24 NOB1_Zn_bind PF08772.11 gi|433592654|ref|YP_007282150.1| - 0.0056 16.8 1.7 0.17 12.1 0.1 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like DUF4132 PF13569.6 gi|433592654|ref|YP_007282150.1| - 0.051 13.4 0.0 0.051 13.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4132) DUF2321 PF10083.9 gi|433592654|ref|YP_007282150.1| - 0.061 13.0 0.6 0.068 12.8 0.6 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) DUF983 PF06170.12 gi|433592654|ref|YP_007282150.1| - 0.65 10.4 1.4 6.9 7.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF983) zn-ribbon_14 PF16503.5 gi|433592654|ref|YP_007282150.1| - 0.95 9.0 5.9 0.45 10.1 2.2 2.0 2 0 0 2 2 2 0 Zinc-ribbon HIT PF01230.23 gi|433592655|ref|YP_007282151.1| - 4.8e-11 43.3 0.0 7.1e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|433592655|ref|YP_007282151.1| - 8.9e-05 22.4 0.0 0.00015 21.7 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|433592655|ref|YP_007282151.1| - 0.0029 18.1 0.3 0.0057 17.1 0.3 1.5 1 1 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding NapD PF03927.13 gi|433592655|ref|YP_007282151.1| - 0.0031 17.5 0.2 0.043 13.9 0.1 2.1 2 0 0 2 2 2 1 NapD protein Cupin_2 PF07883.11 gi|433592656|ref|YP_007282152.1| - 2.4e-14 52.8 1.0 2.4e-14 52.8 1.0 1.5 2 0 0 2 2 2 1 Cupin domain Cupin_7 PF12973.7 gi|433592656|ref|YP_007282152.1| - 1.4e-05 24.9 0.1 2.4e-05 24.1 0.1 1.4 1 1 0 1 1 1 1 ChrR Cupin-like domain 3-HAO PF06052.12 gi|433592656|ref|YP_007282152.1| - 0.0025 17.5 0.0 0.0034 17.0 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyanthranilic acid dioxygenase Cupin_3 PF05899.12 gi|433592656|ref|YP_007282152.1| - 0.0049 16.5 0.1 0.0067 16.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|433592656|ref|YP_007282152.1| - 0.016 14.9 0.1 0.019 14.6 0.1 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Cupin_1 PF00190.22 gi|433592656|ref|YP_007282152.1| - 0.038 13.6 0.0 0.05 13.2 0.0 1.1 1 0 0 1 1 1 0 Cupin cNMP_binding PF00027.29 gi|433592656|ref|YP_007282152.1| - 0.041 13.9 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 Cyclic nucleotide-binding domain Auxin_BP PF02041.16 gi|433592656|ref|YP_007282152.1| - 0.15 11.8 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein GST_N_3 PF13417.6 gi|433592657|ref|YP_007282153.1| - 3.5e-14 53.0 0.0 3.8e-14 52.8 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|433592657|ref|YP_007282153.1| - 3.4e-13 49.6 0.0 4.4e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|433592657|ref|YP_007282153.1| - 7e-08 32.7 0.0 7.9e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|433592657|ref|YP_007282153.1| - 0.00087 19.6 0.0 0.00099 19.4 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|433592657|ref|YP_007282153.1| - 0.0023 18.3 0.2 0.0031 17.9 0.2 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Sof1 PF04158.14 gi|433592657|ref|YP_007282153.1| - 0.061 13.6 0.0 0.068 13.4 0.0 1.1 1 0 0 1 1 1 0 Sof1-like domain AhpC-TSA PF00578.21 gi|433592658|ref|YP_007282154.1| - 2.5e-12 46.8 0.0 3e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|433592658|ref|YP_007282154.1| - 0.0032 17.2 0.0 0.0077 16.0 0.0 1.7 1 1 0 1 1 1 1 Redoxin HTH_20 PF12840.7 gi|433592659|ref|YP_007282155.1| - 2e-09 37.4 0.1 4.1e-09 36.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|433592659|ref|YP_007282155.1| - 3.5e-08 33.2 0.0 4.9e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|433592659|ref|YP_007282155.1| - 5.5e-08 32.5 0.0 9.2e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433592659|ref|YP_007282155.1| - 2.6e-06 27.2 0.0 4.1e-06 26.6 0.0 1.4 1 1 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|433592659|ref|YP_007282155.1| - 2.7e-06 27.2 0.0 4.7e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|433592659|ref|YP_007282155.1| - 1.5e-05 24.4 0.0 0.00023 20.6 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|433592659|ref|YP_007282155.1| - 2.6e-05 23.7 0.0 4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|433592659|ref|YP_007282155.1| - 0.00041 20.2 0.0 0.00069 19.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|433592659|ref|YP_007282155.1| - 0.00083 19.3 0.2 0.0038 17.2 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix Sigma70_r4_2 PF08281.12 gi|433592659|ref|YP_007282155.1| - 0.0017 18.0 0.1 0.0059 16.2 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|433592659|ref|YP_007282155.1| - 0.0018 18.2 0.0 0.0027 17.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain DUF742 PF05331.11 gi|433592659|ref|YP_007282155.1| - 0.0037 17.1 0.0 0.0045 16.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) Replic_Relax PF13814.6 gi|433592659|ref|YP_007282155.1| - 0.0071 16.4 0.0 0.0097 16.0 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation Fe_dep_repress PF01325.19 gi|433592659|ref|YP_007282155.1| - 0.013 15.7 0.0 0.02 15.1 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|433592659|ref|YP_007282155.1| - 0.013 15.8 0.0 0.017 15.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_7 PF02796.15 gi|433592659|ref|YP_007282155.1| - 0.016 15.3 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|433592659|ref|YP_007282155.1| - 0.017 14.9 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|433592659|ref|YP_007282155.1| - 0.019 15.1 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|433592659|ref|YP_007282155.1| - 0.024 14.4 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain HTH_AsnC-type PF13404.6 gi|433592659|ref|YP_007282155.1| - 0.03 14.2 0.0 0.059 13.2 0.0 1.6 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|433592659|ref|YP_007282155.1| - 0.033 14.7 0.0 0.048 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|433592659|ref|YP_007282155.1| - 0.035 14.1 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_17 PF12728.7 gi|433592659|ref|YP_007282155.1| - 0.052 13.8 0.0 0.089 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.19 gi|433592659|ref|YP_007282155.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.3 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_1 PF00126.27 gi|433592659|ref|YP_007282155.1| - 0.16 12.0 0.1 0.23 11.5 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 gi|433592659|ref|YP_007282155.1| - 0.17 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Radical_SAM PF04055.21 gi|433592660|ref|YP_007282156.1| - 1.8e-22 80.5 0.2 4.4e-22 79.2 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|433592660|ref|YP_007282156.1| - 1.1e-19 70.3 0.1 2.4e-19 69.2 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|433592660|ref|YP_007282156.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 TRAM domain DUF4383 PF14325.6 gi|433592662|ref|YP_007282158.1| - 0.13 12.6 8.4 0.18 12.1 8.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4383) DUF3481 PF11980.8 gi|433592662|ref|YP_007282158.1| - 0.79 9.5 4.8 0.18 11.6 1.1 1.8 1 1 1 2 2 2 0 C-terminal domain of neuropilin glycoprotein CSD PF00313.22 gi|433592663|ref|YP_007282159.1| - 2.6e-18 65.6 0.1 2.9e-18 65.5 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|433592663|ref|YP_007282159.1| - 0.066 12.9 2.3 0.096 12.4 2.3 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|433592663|ref|YP_007282159.1| - 0.1 12.6 0.3 0.13 12.3 0.3 1.3 1 1 0 1 1 1 0 S1-like HTH_24 PF13412.6 gi|433592664|ref|YP_007282160.1| - 7.3e-10 38.3 0.0 6.4e-05 22.4 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433592664|ref|YP_007282160.1| - 8.7e-09 35.3 2.0 1.6e-05 24.9 0.5 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|433592664|ref|YP_007282160.1| - 2.6e-08 33.6 1.3 2.7e-05 24.0 0.5 2.5 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|433592664|ref|YP_007282160.1| - 1.2e-06 28.3 0.0 3.4e-05 23.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|433592664|ref|YP_007282160.1| - 0.00097 19.0 0.0 0.0038 17.1 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|433592664|ref|YP_007282160.1| - 0.0013 18.5 0.0 0.0045 16.8 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_10 PF04967.12 gi|433592664|ref|YP_007282160.1| - 0.0026 17.5 0.0 0.013 15.3 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain TrmB PF01978.19 gi|433592664|ref|YP_007282160.1| - 0.017 15.0 0.0 0.036 13.9 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|433592664|ref|YP_007282160.1| - 0.05 13.7 0.3 1.7 8.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|433592664|ref|YP_007282160.1| - 0.053 14.0 0.2 0.41 11.2 0.2 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain AI-2E_transport PF01594.16 gi|433592665|ref|YP_007282161.1| - 6.4e-50 170.2 23.9 7.7e-50 169.9 23.9 1.0 1 0 0 1 1 1 1 AI-2E family transporter CrgA PF06781.12 gi|433592665|ref|YP_007282161.1| - 0.037 14.1 0.0 0.037 14.1 0.0 3.9 4 1 0 4 4 4 0 Cell division protein CrgA SurA_N_3 PF13624.6 gi|433592665|ref|YP_007282161.1| - 3.5 7.4 4.1 1.2 8.9 0.1 2.1 2 0 0 2 2 2 0 SurA N-terminal domain DUF547 PF04784.14 gi|433592666|ref|YP_007282162.1| - 9.3e-27 93.5 0.0 1.3e-26 93.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF547 DUF1508 PF07411.12 gi|433592667|ref|YP_007282163.1| - 2.9e-18 65.5 0.3 4.7e-18 64.8 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) DZR PF12773.7 gi|433592668|ref|YP_007282164.1| - 0.0012 18.8 1.1 0.38 10.8 0.1 2.5 2 0 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|433592668|ref|YP_007282164.1| - 0.19 11.2 4.4 0.38 10.2 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|433592668|ref|YP_007282164.1| - 0.3 10.8 6.4 1.4 8.7 0.3 2.7 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 UPF0547 PF10571.9 gi|433592668|ref|YP_007282164.1| - 0.58 10.3 0.0 0.58 10.3 0.0 2.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 DUF4140 PF13600.6 gi|433592668|ref|YP_007282164.1| - 1.4 9.4 5.2 9.9 6.7 0.3 2.7 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) Mce4_CUP1 PF11887.8 gi|433592668|ref|YP_007282164.1| - 1.9 7.9 5.9 1.7 8.0 0.2 2.2 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative PNP_UDP_1 PF01048.20 gi|433592669|ref|YP_007282165.1| - 1.1e-43 149.2 3.4 1.3e-43 148.9 3.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HalOD1 PF18545.1 gi|433592670|ref|YP_007282166.1| - 1.3e-21 76.6 0.6 1.6e-21 76.4 0.6 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 PfkB PF00294.24 gi|433592671|ref|YP_007282167.1| - 7.9e-48 163.3 4.6 1e-47 162.9 4.6 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Glyoxalase PF00903.25 gi|433592671|ref|YP_007282167.1| - 0.13 12.5 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ADP_PFK_GK PF04587.15 gi|433592671|ref|YP_007282167.1| - 0.45 9.0 1.0 3.2 6.2 0.0 2.0 2 0 0 2 2 2 0 ADP-specific Phosphofructokinase/Glucokinase conserved region DUF63 PF01889.17 gi|433592672|ref|YP_007282168.1| - 6.3e-17 62.6 13.1 8.5e-17 62.2 13.1 1.2 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 IF-2B PF01008.17 gi|433592673|ref|YP_007282169.1| - 2.2e-71 240.4 0.0 2.5e-71 240.2 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PEP-utilizers PF00391.23 gi|433592673|ref|YP_007282169.1| - 0.017 14.8 3.7 0.074 12.8 0.6 3.3 3 1 1 4 4 4 0 PEP-utilising enzyme, mobile domain FumaraseC_C PF10415.9 gi|433592673|ref|YP_007282169.1| - 0.38 11.2 0.0 0.38 11.2 0.0 2.1 2 0 0 2 2 2 0 Fumarase C C-terminus SecD_SecF PF02355.16 gi|433592675|ref|YP_007282171.1| - 4.1e-27 94.8 10.4 6.6e-27 94.1 10.4 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|433592675|ref|YP_007282171.1| - 1.8e-05 24.1 0.1 4.8e-05 22.7 0.1 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|433592675|ref|YP_007282171.1| - 0.52 8.3 13.1 0.78 7.7 13.1 1.2 1 0 0 1 1 1 0 Patched family SecD_SecF PF02355.16 gi|433592676|ref|YP_007282172.1| - 7.6e-13 48.3 4.5 7.6e-13 48.3 4.5 1.9 2 0 0 2 2 2 1 Protein export membrane protein Sterol-sensing PF12349.8 gi|433592676|ref|YP_007282172.1| - 0.015 15.2 2.2 0.015 15.2 2.2 1.5 2 0 0 2 2 2 0 Sterol-sensing domain of SREBP cleavage-activation Arteri_nucleo PF01481.16 gi|433592676|ref|YP_007282172.1| - 0.1 12.9 0.4 4 7.8 0.0 2.3 2 0 0 2 2 2 0 Arterivirus nucleocapsid protein ECH_1 PF00378.20 gi|433592678|ref|YP_007282174.1| - 8.8e-37 126.8 0.0 1e-36 126.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|433592678|ref|YP_007282174.1| - 3.2e-22 79.5 0.0 3.8e-22 79.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Acetyltransf_3 PF13302.7 gi|433592679|ref|YP_007282175.1| - 2.2e-28 99.6 0.0 2.7e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|433592679|ref|YP_007282175.1| - 1.7e-13 50.8 0.0 2.3e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|433592679|ref|YP_007282175.1| - 2.7e-13 50.3 0.0 3.2e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|433592679|ref|YP_007282175.1| - 5.1e-07 29.5 0.0 1.8e-06 27.7 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|433592679|ref|YP_007282175.1| - 6.8e-05 23.2 0.0 0.0001 22.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433592679|ref|YP_007282175.1| - 0.00023 21.1 0.0 0.00031 20.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain NAD_synthase PF02540.17 gi|433592680|ref|YP_007282176.1| - 3e-81 272.1 0.0 3.4e-81 271.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|433592680|ref|YP_007282176.1| - 3.1e-07 29.5 0.0 3.3e-05 22.8 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase HTH_Tnp_ISL3 PF13542.6 gi|433592680|ref|YP_007282176.1| - 0.0001 21.7 0.1 0.0053 16.2 0.0 3.4 3 1 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 QueC PF06508.13 gi|433592680|ref|YP_007282176.1| - 0.0064 16.0 0.0 0.021 14.3 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|433592680|ref|YP_007282176.1| - 0.0069 16.1 0.2 0.014 15.1 0.1 1.4 1 1 0 1 1 1 1 Asparagine synthase HTH_23 PF13384.6 gi|433592680|ref|YP_007282176.1| - 0.035 13.9 0.0 13 5.7 0.0 3.7 4 0 0 4 4 4 0 Homeodomain-like domain ThiI PF02568.14 gi|433592680|ref|YP_007282176.1| - 0.084 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) HTH_28 PF13518.6 gi|433592680|ref|YP_007282176.1| - 0.1 12.7 0.1 5.7 7.2 0.0 3.4 3 1 1 4 4 4 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|433592680|ref|YP_007282176.1| - 0.12 12.4 0.0 4.5 7.4 0.0 3.3 3 1 1 4 4 4 0 Winged helix-turn helix TFIIB PF00382.19 gi|433592681|ref|YP_007282177.1| - 5.6e-44 148.0 2.3 1e-24 86.4 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433592681|ref|YP_007282177.1| - 4e-11 42.2 1.6 4e-11 42.2 1.6 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|433592681|ref|YP_007282177.1| - 0.0086 15.8 1.1 0.019 14.7 1.1 1.5 1 0 0 1 1 1 1 A2L zinc ribbon domain Cyclin_N PF00134.23 gi|433592681|ref|YP_007282177.1| - 0.023 14.4 0.1 0.11 12.2 0.0 2.0 2 0 0 2 2 2 0 Cyclin, N-terminal domain Sigma70_r4 PF04545.16 gi|433592681|ref|YP_007282177.1| - 0.063 12.8 1.0 1.7 8.2 0.1 3.2 2 1 1 3 3 3 0 Sigma-70, region 4 zf-RRN7 PF11781.8 gi|433592681|ref|YP_007282177.1| - 0.12 12.1 1.4 0.2 11.4 1.4 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Cyclin_C PF02984.19 gi|433592681|ref|YP_007282177.1| - 0.13 12.3 0.0 2.2 8.4 0.0 2.2 1 1 1 2 2 2 0 Cyclin, C-terminal domain zf-NADH-PPase PF09297.11 gi|433592681|ref|YP_007282177.1| - 6.1 6.6 9.2 6.2 6.6 0.1 3.0 2 1 1 3 3 3 0 NADH pyrophosphatase zinc ribbon domain LssY_C PF14067.6 gi|433592682|ref|YP_007282178.1| - 0.045 13.3 1.8 0.79 9.2 0.4 2.6 3 0 0 3 3 3 0 LssY C-terminus Usp PF00582.26 gi|433592683|ref|YP_007282179.1| - 1e-31 110.4 5.1 1.1e-31 110.2 5.1 1.0 1 0 0 1 1 1 1 Universal stress protein family HK97-gp10_like PF04883.12 gi|433592683|ref|YP_007282179.1| - 0.13 13.3 0.6 0.27 12.3 0.5 1.6 1 1 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component DUF2953 PF11167.8 gi|433592684|ref|YP_007282180.1| - 0.038 14.1 1.6 0.038 14.1 1.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) ATPase PF06745.13 gi|433592686|ref|YP_007282182.1| - 3.1e-54 183.8 0.0 3.7e-54 183.5 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|433592686|ref|YP_007282182.1| - 3.1e-06 26.9 0.5 5.4e-06 26.1 0.0 1.6 2 1 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|433592686|ref|YP_007282182.1| - 5.1e-06 26.0 0.1 0.00048 19.6 0.1 2.2 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|433592686|ref|YP_007282182.1| - 2.4e-05 24.2 0.0 8.4e-05 22.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|433592686|ref|YP_007282182.1| - 9.7e-05 21.7 0.0 0.00015 21.1 0.0 1.2 1 0 0 1 1 1 1 Rad51 GvpD PF07088.11 gi|433592686|ref|YP_007282182.1| - 0.00014 20.7 0.3 0.0003 19.5 0.3 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein MEDS PF14417.6 gi|433592686|ref|YP_007282182.1| - 0.00036 20.4 0.1 0.00065 19.6 0.1 1.5 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain RecA PF00154.21 gi|433592686|ref|YP_007282182.1| - 0.0047 16.4 0.0 0.065 12.7 0.0 2.0 2 0 0 2 2 2 1 recA bacterial DNA recombination protein T2SSE PF00437.20 gi|433592686|ref|YP_007282182.1| - 0.031 13.3 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.6 gi|433592686|ref|YP_007282182.1| - 0.08 13.0 0.0 0.14 12.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|433592686|ref|YP_007282182.1| - 0.14 11.1 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF2075 PF09848.9 gi|433592686|ref|YP_007282182.1| - 0.14 11.3 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|433592686|ref|YP_007282182.1| - 0.14 11.6 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein NAD_kinase PF01513.21 gi|433592687|ref|YP_007282183.1| - 1e-36 126.7 3.7 5.7e-36 124.2 3.7 1.8 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|433592687|ref|YP_007282183.1| - 0.054 13.1 0.1 0.095 12.3 0.1 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain DSBA PF01323.20 gi|433592688|ref|YP_007282184.1| - 7.1e-32 110.7 0.0 8e-32 110.6 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|433592688|ref|YP_007282184.1| - 2.6e-09 37.5 0.0 5.6e-07 29.9 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|433592688|ref|YP_007282184.1| - 0.024 14.7 0.2 0.13 12.4 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|433592688|ref|YP_007282184.1| - 0.031 14.7 0.3 0.16 12.5 0.3 2.2 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_5 PF13743.6 gi|433592688|ref|YP_007282184.1| - 0.04 13.6 0.0 0.83 9.3 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin Glutaredoxin PF00462.24 gi|433592688|ref|YP_007282184.1| - 0.17 12.2 0.2 1.3 9.3 0.0 2.3 2 0 0 2 2 2 0 Glutaredoxin RlaP PF10127.9 gi|433592690|ref|YP_007282186.1| - 1.2e-29 103.7 0.0 1.7e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 RNA repair pathway DNA polymerase beta family Polbeta PF18765.1 gi|433592690|ref|YP_007282186.1| - 0.03 14.4 0.0 0.058 13.5 0.0 1.4 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase Hemerythrin PF01814.23 gi|433592690|ref|YP_007282186.1| - 0.074 13.7 0.3 0.18 12.4 0.2 1.9 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain NTP_transf_2 PF01909.23 gi|433592690|ref|YP_007282186.1| - 0.13 12.6 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyltransferase domain Tenui_N PF05733.11 gi|433592690|ref|YP_007282186.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Tenuivirus/Phlebovirus nucleocapsid protein GCHY-1 PF02649.14 gi|433592691|ref|YP_007282187.1| - 3e-75 253.1 0.4 3.4e-75 252.9 0.4 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF1517 PF07466.11 gi|433592691|ref|YP_007282187.1| - 0.048 13.8 0.2 0.084 13.0 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1517) SfsA PF03749.13 gi|433592691|ref|YP_007282187.1| - 0.051 13.5 0.0 0.56 10.1 0.0 2.3 2 0 0 2 2 2 0 Sugar fermentation stimulation protein RE domain PDCD9 PF07147.12 gi|433592691|ref|YP_007282187.1| - 0.073 12.3 0.1 0.17 11.1 0.0 1.5 2 0 0 2 2 2 0 Mitochondrial 28S ribosomal protein S30 (PDCD9) TrmB PF01978.19 gi|433592692|ref|YP_007282188.1| - 1.6e-20 72.8 0.1 3e-20 71.9 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|433592692|ref|YP_007282188.1| - 0.00054 19.2 0.0 0.00081 18.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PadR PF03551.14 gi|433592692|ref|YP_007282188.1| - 0.048 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_9 PF08221.11 gi|433592692|ref|YP_007282188.1| - 0.097 12.8 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain PLDc_2 PF13091.6 gi|433592692|ref|YP_007282188.1| - 0.18 11.7 0.1 0.56 10.1 0.1 2.0 1 1 0 1 1 1 0 PLD-like domain Holin_BhlA PF10960.8 gi|433592692|ref|YP_007282188.1| - 0.36 10.8 1.2 1.6 8.8 0.3 2.1 2 0 0 2 2 2 0 BhlA holin family Thioredox_DsbH PF03190.15 gi|433592693|ref|YP_007282189.1| - 3.7e-25 88.8 0.0 6.8e-25 87.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|433592693|ref|YP_007282189.1| - 6.4e-12 45.5 0.0 1.5e-11 44.3 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|433592693|ref|YP_007282189.1| - 7.6e-08 32.3 0.0 1.3e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|433592693|ref|YP_007282189.1| - 4.1e-06 27.2 0.0 7.6e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_88 PF07470.13 gi|433592693|ref|YP_007282189.1| - 0.0049 16.0 0.7 2.5 7.1 0.1 2.8 3 0 0 3 3 3 2 Glycosyl Hydrolase Family 88 RTP1_C1 PF10363.9 gi|433592693|ref|YP_007282189.1| - 0.028 14.6 0.1 0.14 12.3 0.0 2.1 2 0 0 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 1 GlcNAc_2-epim PF07221.11 gi|433592693|ref|YP_007282189.1| - 0.043 13.1 2.8 0.94 8.7 0.2 2.2 2 0 0 2 2 2 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) FxsA PF04186.13 gi|433592694|ref|YP_007282190.1| - 2.6e-29 101.5 9.6 3.7e-29 101.0 9.6 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein RseC_MucC PF04246.12 gi|433592694|ref|YP_007282190.1| - 1.5 8.7 3.2 2.7 7.9 3.2 1.4 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC ABC2_membrane_3 PF12698.7 gi|433592695|ref|YP_007282191.1| - 2.8 7.0 8.6 3.2 6.8 8.6 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3006 PF11213.8 gi|433592696|ref|YP_007282192.1| - 0.00052 20.2 0.5 0.00096 19.3 0.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) DUF2171 PF09939.9 gi|433592696|ref|YP_007282192.1| - 0.095 13.0 1.2 0.15 12.4 1.2 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) IclR PF01614.18 gi|433592697|ref|YP_007282193.1| - 7.8e-34 116.3 0.0 2.3e-33 114.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|433592697|ref|YP_007282193.1| - 1.7e-13 50.1 0.1 3.5e-13 49.1 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433592697|ref|YP_007282193.1| - 1.1e-09 38.0 0.1 2.5e-09 36.9 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|433592697|ref|YP_007282193.1| - 1.2e-09 37.6 0.0 2.1e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433592697|ref|YP_007282193.1| - 1.2e-08 34.9 0.1 2.2e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433592697|ref|YP_007282193.1| - 7.2e-08 32.2 0.0 1.2e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|433592697|ref|YP_007282193.1| - 5e-07 29.5 0.0 1.1e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|433592697|ref|YP_007282193.1| - 6.3e-07 29.2 0.0 1.4e-06 28.2 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|433592697|ref|YP_007282193.1| - 9.9e-05 22.8 0.1 0.0003 21.2 0.1 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|433592697|ref|YP_007282193.1| - 0.00057 19.8 0.1 0.0011 18.8 0.1 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|433592697|ref|YP_007282193.1| - 0.00058 20.2 0.0 0.0013 19.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator RP-C PF03428.13 gi|433592697|ref|YP_007282193.1| - 0.0015 18.2 0.0 0.0027 17.4 0.0 1.5 1 0 0 1 1 1 1 Replication protein C N-terminal domain Mga PF05043.13 gi|433592697|ref|YP_007282193.1| - 0.0053 17.3 0.0 0.0094 16.5 0.0 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_DeoR PF08220.12 gi|433592697|ref|YP_007282193.1| - 0.016 15.0 0.1 0.03 14.1 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.6 gi|433592697|ref|YP_007282193.1| - 0.017 15.3 0.0 0.033 14.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|433592697|ref|YP_007282193.1| - 0.02 14.8 0.0 0.04 13.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|433592697|ref|YP_007282193.1| - 0.03 14.8 0.0 0.052 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HemN_C PF06969.16 gi|433592697|ref|YP_007282193.1| - 0.045 13.8 0.0 0.14 12.3 0.0 1.8 2 0 0 2 2 1 0 HemN C-terminal domain DUF3489 PF11994.8 gi|433592697|ref|YP_007282193.1| - 0.045 13.8 0.0 0.086 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) Rio2_N PF09202.11 gi|433592697|ref|YP_007282193.1| - 0.055 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal HTH_29 PF13551.6 gi|433592697|ref|YP_007282193.1| - 0.057 13.4 0.1 0.34 11.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix HTH_23 PF13384.6 gi|433592697|ref|YP_007282193.1| - 0.07 12.9 0.4 0.41 10.5 0.0 2.3 3 0 0 3 3 3 0 Homeodomain-like domain HTH_7 PF02796.15 gi|433592697|ref|YP_007282193.1| - 0.085 12.9 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sulfolobus_pRN PF05584.11 gi|433592697|ref|YP_007282193.1| - 0.093 12.8 0.4 0.58 10.2 0.2 2.1 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein Phage_X PF05155.15 gi|433592697|ref|YP_007282193.1| - 0.21 12.1 0.0 0.36 11.3 0.0 1.4 1 0 0 1 1 1 0 Phage X family Acyl-CoA_dh_1 PF00441.24 gi|433592698|ref|YP_007282194.1| - 7.3e-33 113.9 1.1 1.1e-32 113.3 1.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|433592698|ref|YP_007282194.1| - 1.5e-28 99.7 0.6 1e-27 97.1 0.1 2.5 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433592698|ref|YP_007282194.1| - 5.5e-25 87.4 0.0 9.4e-25 86.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|433592698|ref|YP_007282194.1| - 1.2e-09 38.5 0.4 2e-09 37.8 0.4 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|433592698|ref|YP_007282194.1| - 0.00091 19.0 0.1 0.005 16.5 0.1 2.1 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal NMT1_3 PF16868.5 gi|433592699|ref|YP_007282195.1| - 2.9e-25 89.3 0.0 3.4e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family TAT_signal PF10518.9 gi|433592699|ref|YP_007282195.1| - 0.017 14.9 4.4 0.039 13.8 4.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|433592699|ref|YP_007282195.1| - 0.033 13.6 1.0 0.061 12.7 1.0 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MccV PF17508.2 gi|433592699|ref|YP_007282195.1| - 0.12 12.9 0.9 0.25 11.9 0.9 1.5 1 0 0 1 1 1 0 Microcin V bacteriocin DctM PF06808.12 gi|433592700|ref|YP_007282196.1| - 1.1e-58 199.1 42.6 1.1e-58 199.1 42.6 2.0 2 0 0 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component AMP-binding PF00501.28 gi|433592701|ref|YP_007282197.1| - 4.5e-111 371.4 0.0 5.5e-111 371.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433592701|ref|YP_007282197.1| - 4.5e-23 82.0 1.6 1e-22 80.9 1.6 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|433592702|ref|YP_007282198.1| - 5.3e-53 179.3 2.7 8.2e-53 178.7 2.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|433592702|ref|YP_007282198.1| - 2.9e-29 102.0 6.1 5e-29 101.3 6.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|433592702|ref|YP_007282198.1| - 9.3e-29 100.4 0.3 9.3e-29 100.4 0.3 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433592702|ref|YP_007282198.1| - 2.2e-25 88.7 0.2 4e-25 87.8 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB PF03241.13 gi|433592702|ref|YP_007282198.1| - 0.00024 20.2 0.9 0.00044 19.4 0.9 1.5 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal DUF390 PF04094.14 gi|433592702|ref|YP_007282198.1| - 0.0081 14.5 0.9 0.011 14.0 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF390) HpaB_N PF11794.8 gi|433592702|ref|YP_007282198.1| - 0.16 11.6 5.2 0.34 10.5 1.5 2.8 2 1 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal FliD_N PF02465.18 gi|433592702|ref|YP_007282198.1| - 0.44 11.3 4.5 0.81 10.4 4.5 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus Thiolase_N PF00108.23 gi|433592703|ref|YP_007282199.1| - 6.5e-69 232.2 3.6 1.8e-68 230.7 3.6 1.6 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|433592703|ref|YP_007282199.1| - 1.6e-43 147.2 0.0 2.3e-42 143.5 0.0 2.3 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|433592703|ref|YP_007282199.1| - 3.1e-07 30.3 0.1 6.6e-07 29.2 0.1 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain PDT PF00800.18 gi|433592703|ref|YP_007282199.1| - 0.032 14.1 0.3 6.7 6.5 0.0 2.6 2 0 0 2 2 2 0 Prephenate dehydratase IclR PF01614.18 gi|433592704|ref|YP_007282200.1| - 2.6e-22 79.0 0.0 5e-22 78.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|433592704|ref|YP_007282200.1| - 4.3e-09 36.0 0.6 1.6e-08 34.2 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|433592704|ref|YP_007282200.1| - 1.5e-06 28.2 0.4 3e-06 27.2 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433592704|ref|YP_007282200.1| - 2.3e-05 24.2 0.0 6.2e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|433592704|ref|YP_007282200.1| - 9e-05 22.0 0.0 0.00019 20.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|433592704|ref|YP_007282200.1| - 0.00013 22.1 0.0 0.0004 20.5 0.1 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|433592704|ref|YP_007282200.1| - 0.00016 21.5 0.0 0.0006 19.7 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|433592704|ref|YP_007282200.1| - 0.00016 21.5 0.1 0.00056 19.8 0.1 1.9 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433592704|ref|YP_007282200.1| - 0.00023 21.0 0.3 0.002 18.0 0.0 2.5 3 1 1 4 4 4 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|433592704|ref|YP_007282200.1| - 0.0031 17.7 0.2 0.0077 16.4 0.1 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.6 gi|433592704|ref|YP_007282200.1| - 0.0035 17.8 0.0 0.01 16.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|433592704|ref|YP_007282200.1| - 0.0045 16.9 0.0 0.02 14.9 0.0 1.9 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.20 gi|433592704|ref|YP_007282200.1| - 0.0058 17.0 0.0 0.02 15.2 0.0 1.9 2 0 0 2 2 1 1 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|433592704|ref|YP_007282200.1| - 0.0093 15.7 0.0 0.039 13.7 0.0 1.9 2 0 0 2 2 2 1 LexA DNA binding domain PadR PF03551.14 gi|433592704|ref|YP_007282200.1| - 0.011 15.6 0.2 0.042 13.8 0.2 2.1 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|433592704|ref|YP_007282200.1| - 0.024 15.2 0.0 0.065 13.7 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_ECF PF07638.11 gi|433592704|ref|YP_007282200.1| - 0.046 13.6 0.0 0.085 12.7 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor HTH_23 PF13384.6 gi|433592704|ref|YP_007282200.1| - 0.049 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain z-alpha PF02295.17 gi|433592704|ref|YP_007282200.1| - 0.053 13.6 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain Sigma70_r4_2 PF08281.12 gi|433592704|ref|YP_007282200.1| - 0.067 12.9 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.6 gi|433592704|ref|YP_007282200.1| - 0.079 13.0 0.0 0.22 11.5 0.0 1.8 2 0 0 2 2 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|433592704|ref|YP_007282200.1| - 0.089 12.6 0.1 0.26 11.1 0.1 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_45 PF14947.6 gi|433592704|ref|YP_007282200.1| - 0.12 12.4 0.0 0.36 10.9 0.0 1.9 2 1 0 2 2 1 0 Winged helix-turn-helix DUF1184 PF06683.11 gi|433592704|ref|YP_007282200.1| - 0.19 11.2 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1184) Na_H_antiporter PF03553.14 gi|433592705|ref|YP_007282201.1| - 6.4e-77 258.8 24.3 6.4e-77 258.8 24.3 2.3 2 0 0 2 2 2 1 Na+/H+ antiporter family Asparaginase PF00710.20 gi|433592707|ref|YP_007282203.1| - 3.6e-52 176.7 0.5 1e-51 175.2 0.0 2.0 3 0 0 3 3 3 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|433592707|ref|YP_007282203.1| - 1.4e-21 76.8 0.2 3.7e-21 75.5 0.1 1.8 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain Peripla_BP_4 PF13407.6 gi|433592707|ref|YP_007282203.1| - 0.035 13.7 1.1 0.075 12.6 1.1 1.5 1 0 0 1 1 1 0 Periplasmic binding protein domain 3HCDH_N PF02737.18 gi|433592709|ref|YP_007282205.1| - 1.9e-63 213.6 1.5 2.4e-63 213.3 1.5 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|433592709|ref|YP_007282205.1| - 1.3e-30 105.9 0.1 7.2e-30 103.5 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|433592709|ref|YP_007282205.1| - 7.5e-08 32.5 0.2 2.3e-07 30.9 0.2 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|433592709|ref|YP_007282205.1| - 6.9e-07 29.6 3.2 3.1e-06 27.4 3.2 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|433592709|ref|YP_007282205.1| - 1.4e-05 24.7 1.8 3.9e-05 23.3 1.8 1.9 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|433592709|ref|YP_007282205.1| - 0.00021 21.8 7.2 0.0027 18.2 4.3 3.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent adh_short_C2 PF13561.6 gi|433592709|ref|YP_007282205.1| - 0.028 14.0 1.6 0.058 13.0 1.6 1.4 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase ApbA PF02558.16 gi|433592709|ref|YP_007282205.1| - 0.038 13.6 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|433592709|ref|YP_007282205.1| - 1.6 8.3 5.0 65 3.0 5.0 2.4 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Sacchrp_dh_NADP PF03435.18 gi|433592709|ref|YP_007282205.1| - 2.5 8.3 4.8 1.8 8.9 1.6 2.3 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain FAD-oxidase_C PF02913.19 gi|433592710|ref|YP_007282206.1| - 5.1e-63 213.0 0.1 2e-62 211.1 0.0 1.9 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|433592710|ref|YP_007282206.1| - 8.9e-38 129.2 0.1 2.2e-37 127.9 0.1 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|433592710|ref|YP_007282206.1| - 7.1e-09 36.0 4.0 1.5e-08 35.0 4.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|433592710|ref|YP_007282206.1| - 9.6e-09 35.7 3.0 1.8e-08 34.8 3.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|433592710|ref|YP_007282206.1| - 2.4e-05 24.4 0.0 0.011 15.9 0.0 2.6 2 0 0 2 2 2 1 Cysteine-rich domain Cytokin-bind PF09265.10 gi|433592710|ref|YP_007282206.1| - 3.6e-05 23.3 0.3 5.4e-05 22.7 0.3 1.2 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_9 PF13187.6 gi|433592710|ref|YP_007282206.1| - 0.0021 18.2 1.7 0.12 12.6 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433592710|ref|YP_007282206.1| - 0.0053 16.8 6.2 0.099 12.8 1.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|433592710|ref|YP_007282206.1| - 0.052 13.7 3.2 0.14 12.3 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|433592710|ref|YP_007282206.1| - 0.13 12.9 6.5 0.59 10.8 6.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|433592710|ref|YP_007282206.1| - 1.6 8.7 15.6 0.25 11.2 4.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|433592710|ref|YP_007282206.1| - 6.4 7.6 11.2 0.41 11.3 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|433592710|ref|YP_007282206.1| - 6.4 7.0 12.0 0.3 11.2 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF2243 PF10002.9 gi|433592711|ref|YP_007282207.1| - 0.033 14.3 0.3 0.049 13.8 0.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2243) DUF3943 PF13084.6 gi|433592711|ref|YP_007282207.1| - 0.07 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3943) TM_helix PF05552.12 gi|433592711|ref|YP_007282207.1| - 0.092 12.7 0.6 0.74 9.8 0.4 2.4 2 0 0 2 2 2 0 Conserved TM helix YdjM PF04307.14 gi|433592712|ref|YP_007282208.1| - 0.00022 20.6 17.9 0.0037 16.6 17.6 2.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase AsnC_trans_reg2 PF17805.1 gi|433592713|ref|YP_007282209.1| - 8.7e-46 154.0 0.0 1.5e-22 79.5 0.0 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|433592713|ref|YP_007282209.1| - 0.004 17.0 3.4 0.77 9.6 0.7 2.9 2 1 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|433592713|ref|YP_007282209.1| - 0.0081 16.0 0.2 3.7 7.5 0.0 2.6 2 0 0 2 2 2 2 MarR family RuBisCO_small PF00101.20 gi|433592713|ref|YP_007282209.1| - 0.19 11.7 0.1 3.3 7.8 0.1 2.3 2 0 0 2 2 2 0 Ribulose bisphosphate carboxylase, small chain Glycos_transf_3 PF00591.21 gi|433592714|ref|YP_007282210.1| - 1.4e-32 113.3 0.0 2e-32 112.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|433592714|ref|YP_007282210.1| - 1.1e-07 31.5 0.0 4.3e-07 29.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Stomoxyn PF11585.8 gi|433592714|ref|YP_007282210.1| - 0.5 10.4 2.7 1.1 9.3 2.7 1.5 1 0 0 1 1 1 0 Insect antimicrobial peptide, stomoxyn ECH_1 PF00378.20 gi|433592715|ref|YP_007282211.1| - 3.5e-60 203.4 0.0 4e-60 203.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|433592715|ref|YP_007282211.1| - 2.9e-35 122.3 0.2 3.8e-32 112.1 0.1 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase DDE_3 PF13358.6 gi|433592716|ref|YP_007282212.1| - 2.2e-15 56.7 0.0 4e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_1 PF03184.19 gi|433592716|ref|YP_007282212.1| - 0.0003 20.5 0.0 0.00056 19.6 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease Oxidored_nitro PF00148.19 gi|433592716|ref|YP_007282212.1| - 0.0065 15.3 0.0 0.0091 14.8 0.0 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DNA_pol_alpha_N PF12254.8 gi|433592716|ref|YP_007282212.1| - 0.019 15.0 0.3 0.019 15.0 0.3 2.1 2 0 0 2 2 2 0 DNA polymerase alpha subunit p180 N terminal DUF5591 PF17884.1 gi|433592716|ref|YP_007282212.1| - 0.061 13.2 0.1 0.78 9.6 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF5591) rve PF00665.26 gi|433592716|ref|YP_007282212.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 Integrase core domain HTH_32 PF13565.6 gi|433592718|ref|YP_007282214.1| - 1.5e-11 44.7 0.2 3.1e-11 43.7 0.0 1.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|433592718|ref|YP_007282214.1| - 1.1e-09 38.2 0.0 1.8e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433592718|ref|YP_007282214.1| - 1.9e-09 37.0 0.1 5.6e-09 35.5 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|433592718|ref|YP_007282214.1| - 6.1e-06 26.3 0.0 1.2e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|433592718|ref|YP_007282214.1| - 0.00045 19.7 0.1 0.0017 17.8 0.0 2.0 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_7 PF02796.15 gi|433592718|ref|YP_007282214.1| - 0.00056 19.9 0.1 0.0014 18.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase DUF746 PF05344.11 gi|433592718|ref|YP_007282214.1| - 0.0037 17.1 0.0 0.0086 15.9 0.0 1.6 2 0 0 2 2 2 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.6 gi|433592718|ref|YP_007282214.1| - 0.0097 16.4 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.12 gi|433592718|ref|YP_007282214.1| - 0.018 14.7 0.0 0.044 13.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_33 PF13592.6 gi|433592718|ref|YP_007282214.1| - 0.02 14.5 0.0 0.2 11.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix CM_2 PF01817.21 gi|433592718|ref|YP_007282214.1| - 0.1 12.9 0.2 1.4 9.3 0.0 2.2 2 0 0 2 2 2 0 Chorismate mutase type II 3HCDH_N PF02737.18 gi|433592719|ref|YP_007282215.1| - 6.1e-53 179.4 1.4 3e-52 177.1 0.3 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|433592719|ref|YP_007282215.1| - 2.2e-11 44.2 0.0 1.5e-10 41.5 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|433592719|ref|YP_007282215.1| - 1.4e-05 25.4 2.0 0.00016 21.9 0.2 2.2 1 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|433592719|ref|YP_007282215.1| - 0.00043 20.3 0.1 0.0042 17.1 0.1 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_8 PF13450.6 gi|433592719|ref|YP_007282215.1| - 0.00087 19.5 0.2 0.0017 18.5 0.2 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|433592719|ref|YP_007282215.1| - 0.0019 17.8 0.6 0.0032 17.1 0.6 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase F420_oxidored PF03807.17 gi|433592719|ref|YP_007282215.1| - 0.011 16.3 0.5 0.025 15.1 0.2 1.8 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|433592719|ref|YP_007282215.1| - 0.011 15.9 0.4 0.011 15.9 0.4 2.1 2 1 0 2 2 2 0 TrkA-N domain Pyr_redox_2 PF07992.14 gi|433592719|ref|YP_007282215.1| - 0.028 13.7 1.2 0.037 13.3 0.5 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|433592719|ref|YP_007282215.1| - 0.032 13.8 0.4 0.057 13.0 0.4 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|433592719|ref|YP_007282215.1| - 0.033 14.7 2.1 0.038 14.6 0.6 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 gi|433592719|ref|YP_007282215.1| - 0.056 13.0 0.6 0.087 12.4 0.1 1.6 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase NAD_binding_7 PF13241.6 gi|433592719|ref|YP_007282215.1| - 0.19 12.2 1.4 0.41 11.1 1.4 1.8 1 1 0 1 1 1 0 Putative NAD(P)-binding SNARE_assoc PF09335.11 gi|433592720|ref|YP_007282216.1| - 0.0015 19.0 0.1 0.0019 18.7 0.1 1.1 1 0 0 1 1 1 1 SNARE associated Golgi protein AA_permease_2 PF13520.6 gi|433592721|ref|YP_007282217.1| - 6.3e-32 110.9 38.6 9.8e-32 110.3 38.7 1.2 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|433592721|ref|YP_007282217.1| - 2.9e-26 92.1 33.7 4.1e-26 91.6 33.7 1.2 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|433592721|ref|YP_007282217.1| - 0.013 14.3 17.7 0.024 13.5 17.7 1.4 1 0 0 1 1 1 0 Spore germination protein Ribonuc_red_sm PF00268.21 gi|433592722|ref|YP_007282218.1| - 5.5e-06 26.0 0.0 1.2e-05 24.9 0.0 1.5 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain AurF PF11583.8 gi|433592722|ref|YP_007282218.1| - 0.061 12.6 0.4 2.8 7.1 0.1 2.7 3 0 0 3 3 3 0 P-aminobenzoate N-oxygenase AurF CoA_transf_3 PF02515.17 gi|433592723|ref|YP_007282219.1| - 3.8e-99 332.3 0.0 4.3e-99 332.1 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III DUF3458_C PF17432.2 gi|433592723|ref|YP_007282219.1| - 0.092 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3458_C) ARM repeats DeoC PF01791.9 gi|433592723|ref|YP_007282219.1| - 0.21 11.2 0.0 0.32 10.6 0.0 1.2 1 0 0 1 1 1 0 DeoC/LacD family aldolase AMP-binding PF00501.28 gi|433592724|ref|YP_007282220.1| - 4e-89 299.1 0.0 4.8e-89 298.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433592724|ref|YP_007282220.1| - 1e-18 68.0 0.1 2.5e-18 66.8 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|433592725|ref|YP_007282221.1| - 7.1e-35 120.4 1.1 1e-34 119.9 1.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433592725|ref|YP_007282221.1| - 1.4e-20 73.3 0.0 4.5e-20 71.6 0.0 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|433592725|ref|YP_007282221.1| - 2.3e-13 50.8 0.4 5.8e-13 49.5 0.4 1.7 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|433592725|ref|YP_007282221.1| - 2.3e-07 31.1 0.4 4.4e-07 30.2 0.4 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Amidase PF01425.21 gi|433592726|ref|YP_007282222.1| - 1.3e-108 363.8 0.0 1.7e-108 363.5 0.0 1.1 1 0 0 1 1 1 1 Amidase adh_short_C2 PF13561.6 gi|433592727|ref|YP_007282223.1| - 2.1e-52 178.0 2.3 2.5e-52 177.8 2.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433592727|ref|YP_007282223.1| - 2e-49 167.7 0.2 2.7e-49 167.3 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433592727|ref|YP_007282223.1| - 1.4e-14 54.4 0.6 2.1e-14 53.8 0.6 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433592727|ref|YP_007282223.1| - 8e-11 41.9 0.1 1.5e-10 40.9 0.1 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|433592727|ref|YP_007282223.1| - 1.7e-05 24.0 0.2 2.5e-05 23.4 0.2 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|433592727|ref|YP_007282223.1| - 8.7e-05 22.1 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|433592727|ref|YP_007282223.1| - 0.0056 16.6 0.9 0.01 15.7 0.9 1.6 1 1 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|433592727|ref|YP_007282223.1| - 0.0085 15.2 0.2 0.011 14.8 0.2 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Sacchrp_dh_NADP PF03435.18 gi|433592727|ref|YP_007282223.1| - 0.013 15.8 0.7 0.029 14.6 0.7 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|433592727|ref|YP_007282223.1| - 0.014 15.3 1.3 0.028 14.3 1.3 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Toprim_2 PF13155.6 gi|433592727|ref|YP_007282223.1| - 0.032 14.6 0.1 0.064 13.7 0.1 1.4 1 0 0 1 1 1 0 Toprim-like NAD_binding_7 PF13241.6 gi|433592727|ref|YP_007282223.1| - 0.07 13.6 0.1 0.24 11.9 0.1 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding Polysacc_synt_2 PF02719.15 gi|433592727|ref|YP_007282223.1| - 0.089 11.9 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein UDPG_MGDP_dh_N PF03721.14 gi|433592727|ref|YP_007282223.1| - 0.094 12.3 0.1 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NmrA PF05368.13 gi|433592727|ref|YP_007282223.1| - 0.29 10.7 1.1 2.7 7.5 0.8 2.0 2 0 0 2 2 2 0 NmrA-like family Thiolase_N PF00108.23 gi|433592728|ref|YP_007282224.1| - 1.7e-56 191.4 0.0 3.8e-56 190.3 0.0 1.6 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|433592728|ref|YP_007282224.1| - 6.3e-41 138.9 0.1 1.1e-40 138.1 0.1 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|433592728|ref|YP_007282224.1| - 0.02 14.5 1.0 0.14 11.7 0.1 2.2 2 0 0 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.10 gi|433592728|ref|YP_007282224.1| - 0.03 14.5 0.1 0.072 13.3 0.1 1.6 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Acyl-CoA_dh_1 PF00441.24 gi|433592729|ref|YP_007282225.1| - 3.3e-37 128.0 5.1 5e-37 127.4 4.0 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433592729|ref|YP_007282225.1| - 7.4e-20 71.0 0.0 1.8e-19 69.7 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|433592729|ref|YP_007282225.1| - 3.5e-18 66.3 1.5 5.5e-18 65.7 0.5 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|433592729|ref|YP_007282225.1| - 2.2e-13 50.6 2.6 4.1e-13 49.8 2.6 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|433592729|ref|YP_007282225.1| - 0.0029 17.3 0.0 0.012 15.3 0.0 2.0 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal RDD PF06271.12 gi|433592731|ref|YP_007282227.1| - 1.1e-14 54.8 1.2 1.5e-14 54.4 1.2 1.1 1 0 0 1 1 1 1 RDD family Gemini_mov PF01708.16 gi|433592731|ref|YP_007282227.1| - 5.1 6.9 4.8 45 3.9 2.7 2.2 1 1 1 2 2 2 0 Geminivirus putative movement protein ABC_tran PF00005.27 gi|433592732|ref|YP_007282228.1| - 4.3e-33 114.7 0.0 6.8e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433592732|ref|YP_007282228.1| - 1.2e-05 25.3 0.0 0.12 12.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|433592732|ref|YP_007282228.1| - 0.0014 19.1 0.1 0.0028 18.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|433592732|ref|YP_007282228.1| - 0.006 16.9 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|433592732|ref|YP_007282228.1| - 0.0081 16.6 1.1 0.017 15.5 0.4 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|433592732|ref|YP_007282228.1| - 0.015 14.8 0.1 0.31 10.5 0.1 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|433592732|ref|YP_007282228.1| - 0.03 14.2 0.1 0.054 13.4 0.1 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain CysA_C_terminal PF17850.1 gi|433592732|ref|YP_007282228.1| - 0.032 14.8 0.7 0.085 13.4 0.3 2.0 2 0 0 2 2 1 0 CysA C-terminal regulatory domain PRC PF05239.16 gi|433592732|ref|YP_007282228.1| - 0.049 13.7 0.1 0.12 12.4 0.1 1.7 1 0 0 1 1 1 0 PRC-barrel domain AAA_5 PF07728.14 gi|433592732|ref|YP_007282228.1| - 0.067 13.2 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|433592732|ref|YP_007282228.1| - 0.081 12.5 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|433592732|ref|YP_007282228.1| - 0.083 13.4 0.2 0.2 12.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|433592732|ref|YP_007282228.1| - 0.087 12.5 0.8 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|433592732|ref|YP_007282228.1| - 0.095 12.6 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase OB_MalK PF17912.1 gi|433592732|ref|YP_007282228.1| - 0.099 13.5 0.1 0.45 11.4 0.0 2.3 3 0 0 3 3 2 0 MalK OB fold domain TOBE_2 PF08402.10 gi|433592732|ref|YP_007282228.1| - 0.13 12.5 0.0 0.33 11.1 0.0 1.8 1 0 0 1 1 1 0 TOBE domain MMR_HSR1 PF01926.23 gi|433592732|ref|YP_007282228.1| - 0.16 12.0 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|433592732|ref|YP_007282228.1| - 0.17 11.6 0.0 0.34 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.22 gi|433592733|ref|YP_007282229.1| - 8.9e-16 58.2 16.9 8.9e-16 58.2 16.9 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component zf-C2H2_8 PF15909.5 gi|433592734|ref|YP_007282230.1| - 0.075 13.3 0.0 0.19 12.0 0.0 1.7 2 0 0 2 2 2 0 C2H2-type zinc ribbon SBP_bac_1 PF01547.25 gi|433592735|ref|YP_007282231.1| - 5.1e-14 53.0 2.0 8.4e-14 52.2 2.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|433592735|ref|YP_007282231.1| - 0.11 12.4 4.3 0.2 11.5 4.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Oxidored_molyb PF00174.19 gi|433592736|ref|YP_007282232.1| - 2.5e-35 121.6 0.0 3.7e-35 121.1 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.16 gi|433592736|ref|YP_007282232.1| - 1.7e-06 28.1 0.4 4.1e-06 26.9 0.4 1.7 1 1 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain BNR PF02012.20 gi|433592736|ref|YP_007282232.1| - 0.088 12.9 0.6 0.32 11.1 0.6 2.0 1 0 0 1 1 1 0 BNR/Asp-box repeat MFS_1 PF07690.16 gi|433592737|ref|YP_007282233.1| - 2.6e-37 128.6 53.6 5.5e-24 84.8 36.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3172 PF11371.8 gi|433592737|ref|YP_007282233.1| - 2.3 7.9 3.6 1.6 8.5 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3172) AMP-binding PF00501.28 gi|433592738|ref|YP_007282234.1| - 4.6e-103 345.0 0.0 5.4e-103 344.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433592738|ref|YP_007282234.1| - 7.9e-18 65.2 0.2 7.9e-18 65.2 0.2 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain adh_short_C2 PF13561.6 gi|433592739|ref|YP_007282235.1| - 1.5e-60 204.7 0.2 1.8e-60 204.4 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433592739|ref|YP_007282235.1| - 5.5e-57 192.4 0.3 7e-57 192.0 0.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433592739|ref|YP_007282235.1| - 4e-14 52.9 0.0 5.1e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433592739|ref|YP_007282235.1| - 6e-06 25.9 0.0 1.2e-05 24.9 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|433592739|ref|YP_007282235.1| - 0.00067 18.7 0.2 0.00086 18.4 0.2 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Sacchrp_dh_NADP PF03435.18 gi|433592739|ref|YP_007282235.1| - 0.0049 17.1 0.0 0.0086 16.3 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|433592739|ref|YP_007282235.1| - 0.084 13.5 0.0 0.27 11.8 0.0 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent RmlD_sub_bind PF04321.17 gi|433592739|ref|YP_007282235.1| - 0.11 11.6 0.0 0.4 9.7 0.0 1.9 2 0 0 2 2 2 0 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|433592739|ref|YP_007282235.1| - 0.15 11.5 0.1 0.22 10.9 0.0 1.4 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase MaoC_dehydrat_N PF13452.6 gi|433592740|ref|YP_007282236.1| - 1.5e-28 99.6 1.4 8.6e-24 84.2 0.2 3.0 2 1 0 2 2 2 2 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.19 gi|433592740|ref|YP_007282236.1| - 9.2e-18 64.0 0.1 4.5e-16 58.5 0.1 2.4 2 0 0 2 2 2 1 MaoC like domain 4HBT PF03061.22 gi|433592740|ref|YP_007282236.1| - 0.034 14.5 0.4 11 6.5 0.0 2.7 2 1 0 2 2 2 0 Thioesterase superfamily OB_aCoA_assoc PF01796.17 gi|433592741|ref|YP_007282237.1| - 2.3e-18 65.9 0.8 2.3e-18 65.9 0.8 1.6 2 0 0 2 2 2 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|433592741|ref|YP_007282237.1| - 1.6e-08 34.2 3.3 2.8e-08 33.5 3.3 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_C PF02803.18 gi|433592742|ref|YP_007282238.1| - 9.2e-09 35.0 0.1 3.2e-07 30.0 0.0 2.5 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.23 gi|433592742|ref|YP_007282238.1| - 0.003 16.9 0.5 0.012 15.0 0.2 2.1 2 1 0 2 2 2 1 Thiolase, N-terminal domain AMP-binding PF00501.28 gi|433592743|ref|YP_007282239.1| - 9.8e-105 350.6 0.1 1.2e-104 350.3 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|433592743|ref|YP_007282239.1| - 2.2e-18 67.0 0.9 5e-18 65.8 0.9 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain BPL_C PF02237.17 gi|433592743|ref|YP_007282239.1| - 0.02 14.8 0.8 1.6 8.7 0.1 3.0 3 0 0 3 3 3 0 Biotin protein ligase C terminal domain 2-Hacid_dh_C PF02826.19 gi|433592744|ref|YP_007282240.1| - 7.7e-56 188.3 0.0 1.4e-55 187.4 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|433592744|ref|YP_007282240.1| - 5.4e-13 48.8 0.0 7e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|433592744|ref|YP_007282240.1| - 2.1e-05 24.6 0.1 3.8e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|433592744|ref|YP_007282240.1| - 0.00098 19.7 0.0 0.002 18.7 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|433592744|ref|YP_007282240.1| - 0.0044 17.2 0.0 0.0079 16.4 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Bac_luciferase PF00296.20 gi|433592745|ref|YP_007282241.1| - 1.1e-53 182.7 1.4 1.3e-53 182.5 1.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF1730 PF08331.10 gi|433592745|ref|YP_007282241.1| - 0.078 12.9 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1730) Lactamase_B PF00753.27 gi|433592746|ref|YP_007282242.1| - 6.3e-20 72.0 5.7 6.3e-20 72.0 5.7 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433592746|ref|YP_007282242.1| - 5.8e-10 39.0 0.9 2.7e-09 36.8 0.9 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|433592746|ref|YP_007282242.1| - 0.19 11.2 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Acyl-CoA_dh_1 PF00441.24 gi|433592747|ref|YP_007282243.1| - 1.6e-46 158.2 2.2 2.7e-46 157.5 2.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|433592747|ref|YP_007282243.1| - 2.8e-30 104.4 0.0 5e-30 103.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|433592747|ref|YP_007282243.1| - 2.3e-18 66.7 0.4 3.4e-18 66.2 0.4 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|433592747|ref|YP_007282243.1| - 3.7e-16 59.8 0.1 1.1e-15 58.2 0.1 1.9 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.8 gi|433592747|ref|YP_007282243.1| - 0.01 15.5 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal GerPC PF10737.9 gi|433592747|ref|YP_007282243.1| - 0.082 13.0 0.4 0.15 12.1 0.4 1.4 1 0 0 1 1 1 0 Spore germination protein GerPC IclR PF01614.18 gi|433592748|ref|YP_007282244.1| - 9.5e-35 119.3 0.0 4.2e-31 107.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|433592748|ref|YP_007282244.1| - 4e-14 52.1 0.1 1.4e-13 50.4 0.1 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433592748|ref|YP_007282244.1| - 1.6e-07 30.8 0.0 5.2e-07 29.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433592748|ref|YP_007282244.1| - 9.8e-07 28.7 0.0 2.2e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433592748|ref|YP_007282244.1| - 3.9e-06 26.6 0.0 7.1e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433592748|ref|YP_007282244.1| - 4.9e-05 23.1 0.0 0.0001 22.1 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|433592748|ref|YP_007282244.1| - 0.00017 21.4 0.0 0.00033 20.5 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|433592748|ref|YP_007282244.1| - 0.00042 20.4 0.0 0.00095 19.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|433592748|ref|YP_007282244.1| - 0.00087 19.2 0.0 0.0025 17.7 0.0 1.8 2 0 0 2 2 1 1 HTH domain TrmB PF01978.19 gi|433592748|ref|YP_007282244.1| - 0.0012 18.7 0.0 0.0031 17.3 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|433592748|ref|YP_007282244.1| - 0.0036 17.5 0.0 0.0074 16.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|433592748|ref|YP_007282244.1| - 0.0049 17.2 0.0 0.011 16.1 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor DUF3489 PF11994.8 gi|433592748|ref|YP_007282244.1| - 0.017 15.1 0.1 0.033 14.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HTH_DeoR PF08220.12 gi|433592748|ref|YP_007282244.1| - 0.018 14.8 0.0 0.041 13.6 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|433592748|ref|YP_007282244.1| - 0.036 13.8 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_27 PF13463.6 gi|433592748|ref|YP_007282244.1| - 0.045 14.3 0.1 0.081 13.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|433592748|ref|YP_007282244.1| - 0.072 12.9 0.1 0.17 11.7 0.1 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_45 PF14947.6 gi|433592748|ref|YP_007282244.1| - 0.076 13.0 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.20 gi|433592748|ref|YP_007282244.1| - 0.08 13.3 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DprA_WH PF17782.1 gi|433592748|ref|YP_007282244.1| - 0.085 13.0 0.1 0.93 9.7 0.0 2.6 3 0 0 3 3 3 0 DprA winged helix domain BLACT_WH PF17778.1 gi|433592748|ref|YP_007282244.1| - 0.12 12.4 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain HTH_AsnC-type PF13404.6 gi|433592748|ref|YP_007282244.1| - 0.13 12.1 0.2 1.4 8.8 0.1 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Sulfolobus_pRN PF05584.11 gi|433592748|ref|YP_007282244.1| - 0.14 12.2 0.0 0.39 10.8 0.0 1.7 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein GerE PF00196.19 gi|433592748|ref|YP_007282244.1| - 0.14 11.7 0.0 0.33 10.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_40 PF14493.6 gi|433592748|ref|YP_007282244.1| - 0.18 12.3 0.0 0.32 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain adh_short_C2 PF13561.6 gi|433592749|ref|YP_007282245.1| - 6.1e-74 248.5 0.3 6.8e-74 248.3 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|433592749|ref|YP_007282245.1| - 3.3e-58 196.4 0.6 3.9e-58 196.2 0.6 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|433592749|ref|YP_007282245.1| - 2.6e-13 50.3 0.1 3.4e-13 49.9 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433592749|ref|YP_007282245.1| - 2.2e-09 37.2 1.0 9.5e-09 35.1 1.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|433592749|ref|YP_007282245.1| - 0.0052 17.1 0.5 0.0092 16.2 0.5 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|433592749|ref|YP_007282245.1| - 0.012 15.0 0.4 0.026 13.9 0.4 1.6 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|433592749|ref|YP_007282245.1| - 0.086 12.7 0.6 0.14 12.0 0.6 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|433592749|ref|YP_007282245.1| - 0.098 12.7 0.9 0.18 11.9 0.3 1.7 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AstE_AspA PF04952.14 gi|433592750|ref|YP_007282246.1| - 2.9e-35 121.8 0.0 3.4e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PemK_toxin PF02452.17 gi|433592751|ref|YP_007282247.1| - 0.0068 16.8 0.0 0.0087 16.5 0.0 1.3 1 1 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system HTH_20 PF12840.7 gi|433592752|ref|YP_007282248.1| - 0.00038 20.5 0.0 0.00053 20.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433592752|ref|YP_007282248.1| - 0.00042 20.1 0.0 0.00065 19.5 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|433592752|ref|YP_007282248.1| - 0.0037 17.6 0.0 0.0055 17.0 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|433592752|ref|YP_007282248.1| - 0.0074 16.2 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433592752|ref|YP_007282248.1| - 0.013 15.4 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|433592752|ref|YP_007282248.1| - 0.018 15.2 0.0 0.027 14.7 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|433592752|ref|YP_007282248.1| - 0.028 14.4 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF4423 PF14394.6 gi|433592752|ref|YP_007282248.1| - 0.029 14.1 0.0 0.036 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Head-tail_con PF12236.8 gi|433592752|ref|YP_007282248.1| - 0.041 12.3 0.0 0.063 11.7 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage head to tail connecting protein GCHY-1 PF02649.14 gi|433592752|ref|YP_007282248.1| - 0.087 12.3 0.0 0.1 12.1 0.0 1.2 1 1 0 1 1 1 0 Type I GTP cyclohydrolase folE2 HTH_27 PF13463.6 gi|433592752|ref|YP_007282248.1| - 0.098 13.2 0.0 0.19 12.2 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Dimerisation PF08100.11 gi|433592752|ref|YP_007282248.1| - 0.11 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain HTH_5 PF01022.20 gi|433592752|ref|YP_007282248.1| - 0.16 11.8 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Pro_isomerase PF00160.21 gi|433592753|ref|YP_007282249.1| - 9.8e-51 172.2 0.0 1.1e-50 172.0 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PAS_4 PF08448.10 gi|433592754|ref|YP_007282250.1| - 1.4e-70 234.5 20.7 2.8e-14 53.3 0.2 6.9 6 0 0 6 6 6 6 PAS fold PAS_9 PF13426.7 gi|433592754|ref|YP_007282250.1| - 5.5e-38 129.4 0.0 6.1e-11 42.5 0.0 6.7 6 0 0 6 6 6 6 PAS domain PAS PF00989.25 gi|433592754|ref|YP_007282250.1| - 2.5e-34 117.7 0.0 1.7e-10 40.9 0.0 6.6 5 1 2 7 7 7 4 PAS fold HATPase_c PF02518.26 gi|433592754|ref|YP_007282250.1| - 5.9e-26 91.2 0.0 1.5e-25 89.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|433592754|ref|YP_007282250.1| - 2.4e-17 62.5 2.3 1.6e-08 34.3 0.1 6.5 5 1 0 5 5 5 2 PAS domain PAS_3 PF08447.12 gi|433592754|ref|YP_007282250.1| - 1.2e-14 54.3 0.0 0.00015 21.9 0.0 5.7 7 0 0 7 7 6 2 PAS fold GAF_2 PF13185.6 gi|433592754|ref|YP_007282250.1| - 1.1e-11 45.1 9.8 4.3e-10 40.0 0.4 5.6 3 1 2 5 5 5 1 GAF domain HisKA PF00512.25 gi|433592754|ref|YP_007282250.1| - 5.1e-10 39.3 0.1 5.1e-10 39.3 0.1 3.5 5 0 0 5 5 4 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|433592754|ref|YP_007282250.1| - 6.3e-09 36.6 0.0 5.9e-08 33.4 0.1 2.7 3 0 0 3 3 3 1 GAF domain PAS_7 PF12860.7 gi|433592754|ref|YP_007282250.1| - 2.8e-07 30.7 0.4 0.12 12.5 0.0 5.4 5 0 0 5 5 5 2 PAS fold sCache_3_3 PF17202.4 gi|433592754|ref|YP_007282250.1| - 8.1e-06 26.2 0.0 0.82 10.1 0.0 4.8 4 0 0 4 4 4 1 Single cache domain 3 PAS_10 PF13596.6 gi|433592754|ref|YP_007282250.1| - 2e-05 25.2 0.0 9.7 6.8 0.0 4.4 4 0 0 4 4 4 1 PAS domain HATPase_c_5 PF14501.6 gi|433592754|ref|YP_007282250.1| - 0.00048 20.0 0.0 0.0034 17.3 0.0 2.2 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 gi|433592754|ref|YP_007282250.1| - 0.0011 18.9 0.2 0.0031 17.4 0.2 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_6 PF08348.11 gi|433592754|ref|YP_007282250.1| - 0.0017 18.2 0.0 5.2 7.0 0.0 4.0 4 1 0 4 4 3 1 YheO-like PAS domain dCache_3 PF14827.6 gi|433592754|ref|YP_007282250.1| - 0.025 14.2 0.0 13 5.3 0.0 3.2 3 0 0 3 3 3 0 Double sensory domain of two-component sensor kinase HATPase_c_3 PF13589.6 gi|433592754|ref|YP_007282250.1| - 0.038 13.8 0.0 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|433592754|ref|YP_007282250.1| - 0.065 13.6 0.1 0.6 10.5 0.0 2.7 2 0 0 2 2 2 0 GAF domain adh_short PF00106.25 gi|433592755|ref|YP_007282251.1| - 2.6e-24 85.8 0.1 1.6e-23 83.2 0.1 1.9 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|433592755|ref|YP_007282251.1| - 4.3e-13 49.4 0.2 8.1e-13 48.5 0.1 1.4 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|433592755|ref|YP_007282251.1| - 1.5e-06 28.2 0.1 2.6e-06 27.5 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|433592755|ref|YP_007282251.1| - 4.3e-06 26.4 0.0 6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|433592755|ref|YP_007282251.1| - 0.015 14.5 0.0 0.028 13.5 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Pyr_redox_3 PF13738.6 gi|433592755|ref|YP_007282251.1| - 0.1 11.9 0.1 0.16 11.2 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Polysacc_synt_2 PF02719.15 gi|433592755|ref|YP_007282251.1| - 0.12 11.5 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein PKD_3 PF16820.5 gi|433592756|ref|YP_007282252.1| - 0.028 14.2 0.0 0.081 12.7 0.0 1.7 2 0 0 2 2 2 0 PKD-like domain SSF PF00474.17 gi|433592757|ref|YP_007282253.1| - 7.5e-64 216.1 30.0 1e-63 215.6 30.0 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF4605 PF15378.6 gi|433592758|ref|YP_007282254.1| - 0.16 11.9 0.6 0.2 11.6 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4605) FixQ PF05545.11 gi|433592758|ref|YP_007282254.1| - 0.32 11.0 3.4 0.82 9.7 3.4 1.8 1 1 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ Pro_dh PF01619.18 gi|433592759|ref|YP_007282255.1| - 1.2e-25 90.7 0.0 2.6e-25 89.6 0.0 1.6 1 1 0 1 1 1 1 Proline dehydrogenase HTH_10 PF04967.12 gi|433592760|ref|YP_007282256.1| - 7.8e-19 67.2 0.0 1.5e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Tnp_1_2 PF13022.6 gi|433592760|ref|YP_007282256.1| - 9.4e-06 25.8 0.0 1.7e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_24 PF13412.6 gi|433592760|ref|YP_007282256.1| - 4.6e-05 22.9 0.2 0.0001 21.8 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|433592760|ref|YP_007282256.1| - 0.0015 18.2 0.5 0.94 9.2 0.1 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_50 PF18024.1 gi|433592760|ref|YP_007282256.1| - 0.0016 18.0 0.0 0.0039 16.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.16 gi|433592760|ref|YP_007282256.1| - 0.0021 17.8 0.0 0.0061 16.3 0.0 1.8 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 gi|433592760|ref|YP_007282256.1| - 0.0036 17.2 0.2 0.01 15.8 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|433592760|ref|YP_007282256.1| - 0.006 16.4 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433592760|ref|YP_007282256.1| - 0.008 16.1 0.1 0.054 13.4 0.0 2.4 3 0 0 3 3 3 1 MarR family UPF0122 PF04297.14 gi|433592760|ref|YP_007282256.1| - 0.0089 16.3 0.0 0.017 15.3 0.0 1.4 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_AsnC-type PF13404.6 gi|433592760|ref|YP_007282256.1| - 0.014 15.2 0.1 0.052 13.4 0.1 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|433592760|ref|YP_007282256.1| - 0.018 14.7 0.2 0.039 13.6 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|433592760|ref|YP_007282256.1| - 0.029 14.4 0.0 0.083 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|433592760|ref|YP_007282256.1| - 0.034 13.7 0.1 0.081 12.5 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 TetR_N PF00440.23 gi|433592760|ref|YP_007282256.1| - 0.041 13.7 0.0 0.14 12.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_36 PF13730.6 gi|433592760|ref|YP_007282256.1| - 0.048 13.6 0.0 0.086 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|433592760|ref|YP_007282256.1| - 0.17 11.5 0.0 1.6 8.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family IF2_N PF04760.15 gi|433592760|ref|YP_007282256.1| - 0.2 11.5 0.1 0.34 10.8 0.1 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_23 PF13384.6 gi|433592760|ref|YP_007282256.1| - 0.37 10.6 4.0 0.63 9.9 0.0 2.5 3 0 0 3 3 2 0 Homeodomain-like domain Aldedh PF00171.22 gi|433592761|ref|YP_007282257.1| - 1e-143 479.2 0.0 1.3e-143 478.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 gi|433592761|ref|YP_007282257.1| - 0.057 13.4 0.7 0.11 12.5 0.7 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated LuxC PF05893.14 gi|433592761|ref|YP_007282257.1| - 0.068 12.2 0.1 0.2 10.7 0.1 1.7 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) SPOUT_MTase_2 PF14419.6 gi|433592761|ref|YP_007282257.1| - 0.17 11.3 0.0 0.64 9.4 0.0 1.9 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP IclR PF01614.18 gi|433592762|ref|YP_007282258.1| - 4.3e-29 101.0 0.0 3.6e-28 98.0 0.0 2.0 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|433592762|ref|YP_007282258.1| - 1.7e-12 47.0 7.4 1.9e-12 46.8 0.7 3.1 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|433592762|ref|YP_007282258.1| - 5.7e-09 35.9 1.5 8e-08 32.2 0.5 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433592762|ref|YP_007282258.1| - 8.8e-08 31.9 0.8 3.4e-06 26.9 0.2 2.6 3 0 0 3 3 3 1 MarR family MarR PF01047.22 gi|433592762|ref|YP_007282258.1| - 2.1e-07 30.8 0.0 3.6e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|433592762|ref|YP_007282258.1| - 1.4e-06 28.0 0.1 4.7e-06 26.4 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|433592762|ref|YP_007282258.1| - 8.9e-06 25.2 0.0 1.7e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|433592762|ref|YP_007282258.1| - 3.8e-05 23.5 0.3 0.0015 18.4 0.0 3.2 4 0 0 4 4 4 1 HTH domain HTH_27 PF13463.6 gi|433592762|ref|YP_007282258.1| - 0.00085 19.8 0.1 0.0023 18.4 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_40 PF14493.6 gi|433592762|ref|YP_007282258.1| - 0.0014 19.0 0.3 0.0042 17.5 0.0 2.0 3 0 0 3 3 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|433592762|ref|YP_007282258.1| - 0.0018 18.1 0.0 0.058 13.3 0.0 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|433592762|ref|YP_007282258.1| - 0.0095 15.7 0.1 0.026 14.3 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain DUF4423 PF14394.6 gi|433592762|ref|YP_007282258.1| - 0.016 14.9 0.0 0.038 13.7 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_32 PF13565.6 gi|433592762|ref|YP_007282258.1| - 0.017 15.7 0.2 0.1 13.2 0.1 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_23 PF13384.6 gi|433592762|ref|YP_007282258.1| - 0.017 14.9 0.0 0.065 13.1 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_DeoR PF08220.12 gi|433592762|ref|YP_007282258.1| - 0.071 12.9 0.1 0.23 11.2 0.1 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433592762|ref|YP_007282258.1| - 0.1 12.6 0.3 0.61 10.1 0.0 2.3 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|433592762|ref|YP_007282258.1| - 0.11 12.7 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|433592762|ref|YP_007282258.1| - 0.11 12.0 0.2 0.32 10.6 0.0 1.8 2 0 0 2 2 1 0 Sigma-70, region 4 EAP30 PF04157.16 gi|433592762|ref|YP_007282258.1| - 0.12 11.6 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family LexA_DNA_bind PF01726.16 gi|433592762|ref|YP_007282258.1| - 0.13 12.0 0.0 0.49 10.2 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain HTH_WhiA PF02650.14 gi|433592762|ref|YP_007282258.1| - 0.2 12.0 0.2 4.1 7.8 0.0 2.2 2 0 0 2 2 2 0 WhiA C-terminal HTH domain Fer4_15 PF13459.6 gi|433592763|ref|YP_007282259.1| - 0.0075 17.0 1.4 0.0075 17.0 1.4 2.0 2 1 1 3 3 3 1 4Fe-4S single cluster domain SnoaL_3 PF13474.6 gi|433592764|ref|YP_007282260.1| - 0.057 13.7 2.1 0.53 10.6 0.6 2.7 2 1 0 2 2 2 0 SnoaL-like domain Aldedh PF00171.22 gi|433592765|ref|YP_007282261.1| - 9.4e-160 532.1 0.2 1.1e-159 531.9 0.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family AFOR_C PF01314.18 gi|433592767|ref|YP_007282263.1| - 0.013 14.5 0.1 0.014 14.4 0.1 1.2 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Thiolase_N PF00108.23 gi|433592768|ref|YP_007282264.1| - 7.7e-75 251.6 0.9 1.3e-74 250.9 0.9 1.3 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|433592768|ref|YP_007282264.1| - 2.5e-42 143.4 0.1 5.9e-42 142.2 0.0 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|433592768|ref|YP_007282264.1| - 0.00015 21.4 0.6 0.00038 20.1 0.6 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain HTH_7 PF02796.15 gi|433592768|ref|YP_007282264.1| - 0.11 12.6 0.0 0.44 10.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase ACP_syn_III PF08545.10 gi|433592768|ref|YP_007282264.1| - 2.6 8.0 6.2 14 5.6 0.2 2.6 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF3040 PF11239.8 gi|433592769|ref|YP_007282265.1| - 0.0052 17.0 1.7 0.006 16.8 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3040) Adeno_E3 PF06040.11 gi|433592769|ref|YP_007282265.1| - 0.052 13.7 0.3 0.06 13.5 0.3 1.0 1 0 0 1 1 1 0 Adenovirus E3 protein PLDc_N PF13396.6 gi|433592770|ref|YP_007282266.1| - 0.72 9.8 9.5 0.12 12.3 5.7 1.7 1 1 1 2 2 2 0 Phospholipase_D-nuclease N-terminal TraB PF01963.17 gi|433592771|ref|YP_007282267.1| - 6.2e-18 65.6 0.0 7.9e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 TraB family Cofac_haem_bdg PF04187.13 gi|433592771|ref|YP_007282267.1| - 0.093 12.7 2.6 0.19 11.7 2.6 1.8 1 1 0 1 1 1 0 Haem-binding uptake, Tiki superfamily, ChaN AFOR_C PF01314.18 gi|433592772|ref|YP_007282268.1| - 6.4e-71 239.4 0.0 1e-70 238.7 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|433592772|ref|YP_007282268.1| - 9.6e-65 218.2 0.0 1.4e-64 217.6 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF2391 PF09622.10 gi|433592773|ref|YP_007282269.1| - 4.1e-06 26.3 0.1 5.7e-06 25.9 0.1 1.2 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) Sensor_TM1 PF13755.6 gi|433592773|ref|YP_007282269.1| - 0.1 12.4 0.3 0.18 11.6 0.3 1.3 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain EamA PF00892.20 gi|433592774|ref|YP_007282270.1| - 1.2e-09 38.5 20.6 1.3e-09 38.3 20.6 1.0 1 0 0 1 1 1 1 EamA-like transporter family TMEM234 PF10639.9 gi|433592774|ref|YP_007282270.1| - 0.013 15.5 1.9 0.02 14.9 1.9 1.4 1 0 0 1 1 1 0 Putative transmembrane family 234 ABC2_membrane_5 PF13346.6 gi|433592774|ref|YP_007282270.1| - 0.44 10.1 11.1 0.31 10.6 9.8 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein PTPS_related PF10131.9 gi|433592774|ref|YP_007282270.1| - 2.3 6.4 10.8 1.5 7.0 9.0 1.5 1 1 1 2 2 2 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein Na_H_Exchanger PF00999.21 gi|433592775|ref|YP_007282271.1| - 1.6e-35 122.6 42.7 2e-35 122.3 42.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|433592775|ref|YP_007282271.1| - 1.5e-32 112.2 3.3 1.6e-32 112.2 1.5 2.0 2 0 0 2 2 1 1 TrkA-N domain TrkA_C PF02080.21 gi|433592775|ref|YP_007282271.1| - 6.9e-12 45.0 1.6 4.5e-11 42.4 0.2 2.5 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|433592775|ref|YP_007282271.1| - 3.4e-08 33.9 0.3 7.8e-08 32.7 0.3 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.16 gi|433592775|ref|YP_007282271.1| - 2.6e-05 23.9 2.5 0.00035 20.2 0.1 2.9 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|433592775|ref|YP_007282271.1| - 2.9e-05 23.5 0.1 4.1e-05 23.0 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|433592775|ref|YP_007282271.1| - 6.3e-05 23.2 0.2 0.00024 21.4 0.2 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|433592775|ref|YP_007282271.1| - 0.0001 22.8 1.6 0.0068 17.0 0.3 2.7 1 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|433592775|ref|YP_007282271.1| - 0.00091 18.5 0.5 0.0018 17.6 0.5 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|433592775|ref|YP_007282271.1| - 0.0021 18.5 0.3 0.0054 17.3 0.3 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.21 gi|433592775|ref|YP_007282271.1| - 0.0077 15.7 0.1 0.012 15.1 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|433592775|ref|YP_007282271.1| - 0.0093 15.3 0.1 0.021 14.2 0.0 1.6 2 0 0 2 2 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|433592775|ref|YP_007282271.1| - 0.01 15.1 0.9 0.033 13.5 0.4 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|433592775|ref|YP_007282271.1| - 0.011 15.3 0.3 0.011 15.3 0.3 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|433592775|ref|YP_007282271.1| - 0.017 14.7 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|433592775|ref|YP_007282271.1| - 0.039 13.9 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HEM4 PF02602.15 gi|433592775|ref|YP_007282271.1| - 0.04 13.3 0.8 0.38 10.1 0.8 2.4 1 1 0 1 1 1 0 Uroporphyrinogen-III synthase HemD NAD_binding_2 PF03446.15 gi|433592775|ref|YP_007282271.1| - 0.042 14.0 0.0 0.088 13.0 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|433592775|ref|YP_007282271.1| - 0.044 13.7 0.1 0.085 12.7 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|433592775|ref|YP_007282271.1| - 0.045 12.8 0.0 0.07 12.2 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein HI0933_like PF03486.14 gi|433592775|ref|YP_007282271.1| - 0.066 11.9 0.0 0.1 11.3 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein Internalin_N PF12354.8 gi|433592775|ref|YP_007282271.1| - 0.19 11.9 2.1 0.32 11.1 0.1 2.6 2 0 0 2 2 2 0 Bacterial adhesion/invasion protein N terminal NmrA PF05368.13 gi|433592775|ref|YP_007282271.1| - 0.6 9.6 3.9 1.5 8.3 0.2 2.5 2 1 1 3 3 3 0 NmrA-like family AMP-binding PF00501.28 gi|433592776|ref|YP_007282272.1| - 3.9e-93 312.3 0.0 4.7e-93 312.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Lactamase_B PF00753.27 gi|433592777|ref|YP_007282273.1| - 2.9e-23 82.9 8.9 4.3e-23 82.4 8.9 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433592777|ref|YP_007282273.1| - 1.1e-06 28.4 0.9 2.1e-06 27.4 0.9 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HisKA_4TM PF16926.5 gi|433592778|ref|YP_007282274.1| - 1.3e-16 60.6 4.4 3.3e-16 59.3 3.7 1.9 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|433592778|ref|YP_007282274.1| - 1e-15 58.2 0.0 1.7e-15 57.5 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|433592778|ref|YP_007282274.1| - 2.1e-06 27.7 0.1 4.3e-06 26.7 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|433592778|ref|YP_007282274.1| - 6.6e-05 22.8 0.0 0.00012 22.0 0.0 1.3 1 0 0 1 1 1 1 GHKL domain SsgA PF04686.12 gi|433592778|ref|YP_007282274.1| - 0.014 15.4 0.6 0.052 13.5 0.0 2.2 3 0 0 3 3 3 0 Streptomyces sporulation and cell division protein, SsgA SPOB_a PF14689.6 gi|433592778|ref|YP_007282274.1| - 0.016 14.9 0.2 0.029 14.1 0.2 1.3 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain CHIP_TPR_N PF18391.1 gi|433592778|ref|YP_007282274.1| - 0.022 15.5 0.2 0.05 14.4 0.2 1.6 1 0 0 1 1 1 0 CHIP N-terminal tetratricopeptide repeat domain HisKA PF00512.25 gi|433592778|ref|YP_007282274.1| - 0.04 13.9 2.1 0.081 13.0 0.6 2.1 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain Hemerythrin PF01814.23 gi|433592778|ref|YP_007282274.1| - 0.34 11.5 3.7 0.77 10.4 3.7 1.5 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain Cation_efflux PF01545.21 gi|433592779|ref|YP_007282275.1| - 2e-42 145.2 6.0 2.3e-42 145.0 6.0 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|433592779|ref|YP_007282275.1| - 2.6e-15 56.3 0.4 5.4e-15 55.3 0.4 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter ASL_C2 PF14698.6 gi|433592779|ref|YP_007282275.1| - 0.097 13.4 0.0 0.25 12.1 0.0 1.6 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal CRCB PF02537.15 gi|433592780|ref|YP_007282276.1| - 3.4e-11 43.3 10.4 4.2e-11 43.0 10.4 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) TetR_C_14 PF17754.1 gi|433592780|ref|YP_007282276.1| - 0.015 15.2 0.1 0.024 14.6 0.1 1.5 1 0 0 1 1 1 0 MftR C-terminal domain DUF4027 PF13219.6 gi|433592780|ref|YP_007282276.1| - 1.9 8.4 0.1 1.9 8.4 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4027) CRCB PF02537.15 gi|433592781|ref|YP_007282277.1| - 3.9e-23 81.6 8.2 5e-23 81.2 8.2 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) MgtE PF01769.16 gi|433592782|ref|YP_007282278.1| - 5e-23 81.8 5.1 5e-23 81.8 5.1 1.4 2 0 0 2 2 2 1 Divalent cation transporter MgtE PF01769.16 gi|433592783|ref|YP_007282279.1| - 3.8e-26 91.9 9.9 3.8e-26 91.9 9.9 1.4 2 0 0 2 2 2 1 Divalent cation transporter DUF1422 PF07226.11 gi|433592783|ref|YP_007282279.1| - 0.026 14.5 1.7 0.059 13.4 0.5 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1422) Pox_A14 PF05767.12 gi|433592783|ref|YP_007282279.1| - 0.12 12.6 5.8 0.17 12.1 1.1 2.7 2 1 1 3 3 3 0 Poxvirus virion envelope protein A14 Phage_r1t_holin PF16945.5 gi|433592783|ref|YP_007282279.1| - 2.4 8.4 6.2 1 9.6 1.2 2.4 1 1 1 2 2 2 0 Putative lactococcus lactis phage r1t holin DUF2244 PF10003.9 gi|433592783|ref|YP_007282279.1| - 8.2 6.1 8.0 72 3.0 8.0 2.2 1 1 0 1 1 1 0 Integral membrane protein (DUF2244) TrkA_C PF02080.21 gi|433592784|ref|YP_007282280.1| - 9.5e-26 89.4 0.4 9.7e-16 57.4 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|433592784|ref|YP_007282280.1| - 1.1e-20 73.8 7.8 3.4e-10 40.3 2.6 2.6 2 0 0 2 2 2 2 PhoU domain CLZ PF16526.5 gi|433592784|ref|YP_007282280.1| - 0.0084 16.4 1.5 2.3 8.6 0.0 2.4 2 0 0 2 2 2 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels PRONE PF03759.13 gi|433592784|ref|YP_007282280.1| - 0.11 11.3 0.0 0.3 9.9 0.0 1.7 1 0 0 1 1 1 0 PRONE (Plant-specific Rop nucleotide exchanger) KfrA_N PF11740.8 gi|433592784|ref|YP_007282280.1| - 0.97 10.1 5.9 1.4 9.7 0.0 3.3 3 1 1 4 4 4 0 Plasmid replication region DNA-binding N-term Seryl_tRNA_N PF02403.22 gi|433592785|ref|YP_007282281.1| - 3.3e-27 94.8 6.9 5.8e-27 94.1 6.9 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain tRNA-synt_2b PF00587.25 gi|433592785|ref|YP_007282281.1| - 3.9e-27 95.4 0.0 1.1e-26 93.9 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) ZapB PF06005.12 gi|433592785|ref|YP_007282281.1| - 0.0077 16.7 9.1 0.59 10.6 3.5 2.8 3 0 0 3 3 3 2 Cell division protein ZapB FapA PF03961.13 gi|433592785|ref|YP_007282281.1| - 0.0084 14.8 1.6 0.013 14.2 1.6 1.1 1 0 0 1 1 1 1 Flagellar Assembly Protein A DUF2110 PF09883.9 gi|433592785|ref|YP_007282281.1| - 0.1 12.1 1.0 0.57 9.7 0.9 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2110) V-SNARE PF05008.15 gi|433592785|ref|YP_007282281.1| - 2.9 8.3 6.3 25 5.3 2.7 2.5 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Atg14 PF10186.9 gi|433592785|ref|YP_007282281.1| - 3.3 6.7 3.9 5.3 6.0 3.9 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 EzrA PF06160.12 gi|433592786|ref|YP_007282282.1| - 0.014 13.6 8.1 1.9 6.6 0.3 3.1 3 0 0 3 3 3 0 Septation ring formation regulator, EzrA DUF948 PF06103.11 gi|433592786|ref|YP_007282282.1| - 0.025 14.8 9.8 11 6.4 0.1 5.3 5 2 1 6 6 6 0 Bacterial protein of unknown function (DUF948) DASH_Duo1 PF08651.10 gi|433592786|ref|YP_007282282.1| - 0.028 14.2 0.6 31 4.5 0.0 3.6 3 0 0 3 3 3 0 DASH complex subunit Duo1 DUF1810 PF08837.11 gi|433592786|ref|YP_007282282.1| - 0.086 12.6 0.3 24 4.8 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1810) DASH_Dad4 PF08650.10 gi|433592786|ref|YP_007282282.1| - 0.095 12.7 0.7 49 4.0 0.1 3.3 3 0 0 3 3 3 0 DASH complex subunit Dad4 DUF3859 PF12975.7 gi|433592786|ref|YP_007282282.1| - 0.1 12.6 1.1 64 3.5 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF3859) Arm-DNA-bind_3 PF13356.6 gi|433592786|ref|YP_007282282.1| - 0.11 12.9 5.3 58 4.2 0.1 4.0 4 0 0 4 4 4 0 Arm DNA-binding domain LRRC37 PF15779.5 gi|433592786|ref|YP_007282282.1| - 0.11 12.9 3.8 13 6.2 0.1 2.9 3 0 0 3 3 3 0 Leucine-rich repeat-containing protein 37 family YqgC PF17430.2 gi|433592786|ref|YP_007282282.1| - 0.18 11.9 0.0 50 4.1 0.0 3.1 3 0 0 3 3 3 0 Uncharacterized YqgC-like NleF_casp_inhib PF16809.5 gi|433592786|ref|YP_007282282.1| - 6.3 6.7 6.5 8.9 6.2 0.3 3.0 3 0 0 3 3 3 0 NleF caspase inhibitor GTP_EFTU PF00009.27 gi|433592787|ref|YP_007282283.1| - 9.4e-66 221.1 0.4 1.8e-65 220.2 0.4 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 gi|433592787|ref|YP_007282283.1| - 5.4e-24 84.0 0.1 5.8e-23 80.7 0.0 2.6 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_IV PF03764.18 gi|433592787|ref|YP_007282283.1| - 1.3e-23 83.0 0.0 4e-23 81.5 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|433592787|ref|YP_007282283.1| - 3.7e-21 75.0 0.4 3.7e-21 75.0 0.4 2.0 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|433592787|ref|YP_007282283.1| - 9.7e-18 64.3 2.3 1.4e-16 60.6 1.2 3.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|433592787|ref|YP_007282283.1| - 1.2e-05 25.4 0.6 0.00014 21.9 0.1 2.8 3 0 0 3 3 3 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|433592787|ref|YP_007282283.1| - 0.081 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain SRPRB PF09439.10 gi|433592787|ref|YP_007282283.1| - 0.11 11.9 0.1 0.41 10.0 0.1 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|433592787|ref|YP_007282283.1| - 0.11 12.4 1.1 0.98 9.3 0.0 2.7 3 1 0 3 3 3 0 RsgA GTPase Ras PF00071.22 gi|433592787|ref|YP_007282283.1| - 0.17 11.5 0.0 0.38 10.3 0.0 1.5 1 0 0 1 1 1 0 Ras family Peptidase_M78 PF06114.13 gi|433592788|ref|YP_007282284.1| - 0.17 11.9 2.3 0.11 12.4 0.6 1.6 2 0 0 2 2 2 0 IrrE N-terminal-like domain PAXNEB PF05625.11 gi|433592789|ref|YP_007282285.1| - 0.011 14.9 0.0 0.012 14.8 0.0 1.0 1 0 0 1 1 1 0 PAXNEB protein CSTF2_hinge PF14327.6 gi|433592791|ref|YP_007282287.1| - 0.12 12.8 0.0 0.14 12.6 0.0 1.1 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 Ribosomal_S7 PF00177.21 gi|433592792|ref|YP_007282288.1| - 1.4e-36 125.4 1.7 1.8e-36 125.0 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF1727 PF08353.10 gi|433592792|ref|YP_007282288.1| - 0.076 13.0 0.1 3.8 7.5 0.0 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1727) Ribosom_S12_S23 PF00164.25 gi|433592793|ref|YP_007282289.1| - 3.1e-50 168.5 0.5 3.9e-50 168.2 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 V4R PF02830.18 gi|433592794|ref|YP_007282290.1| - 2.5e-07 30.6 0.2 4.3e-07 29.8 0.2 1.4 1 0 0 1 1 1 1 V4R domain DUF2378 PF09536.10 gi|433592794|ref|YP_007282290.1| - 0.051 13.5 0.0 0.47 10.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2378) MukF_C PF17193.4 gi|433592794|ref|YP_007282290.1| - 0.16 12.1 0.0 1.1 9.3 0.0 1.9 1 1 1 2 2 2 0 MukF C-terminal domain Aldedh PF00171.22 gi|433592795|ref|YP_007282291.1| - 2.5e-153 510.9 0.0 2.9e-153 510.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family ParA PF10609.9 gi|433592796|ref|YP_007282292.1| - 1.8e-49 168.4 0.0 2.3e-49 168.1 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|433592796|ref|YP_007282292.1| - 5.1e-13 49.2 0.0 7.9e-13 48.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|433592796|ref|YP_007282292.1| - 1.5e-07 31.5 0.2 2.9e-07 30.6 0.2 1.4 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.11 gi|433592796|ref|YP_007282292.1| - 6.4e-06 25.6 0.0 1.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein FeS_assembly_P PF01883.19 gi|433592796|ref|YP_007282292.1| - 0.00011 22.3 0.1 0.00052 20.1 0.1 2.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein MipZ PF09140.11 gi|433592796|ref|YP_007282292.1| - 0.0003 20.2 3.6 0.00067 19.0 2.8 2.1 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|433592796|ref|YP_007282292.1| - 0.00042 19.6 0.3 0.0034 16.6 0.4 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|433592796|ref|YP_007282292.1| - 0.001 18.9 0.1 0.047 13.5 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|433592796|ref|YP_007282292.1| - 0.0044 16.6 0.0 0.012 15.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433592796|ref|YP_007282292.1| - 0.017 15.5 0.5 8.6 6.7 0.5 2.5 2 0 0 2 2 2 0 AAA ATPase domain CBP_BcsQ PF06564.12 gi|433592796|ref|YP_007282292.1| - 0.026 14.0 0.7 0.06 12.8 0.7 1.7 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ Glyco_transf_4 PF13439.6 gi|433592796|ref|YP_007282292.1| - 0.084 12.9 0.2 0.27 11.2 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 APS_kinase PF01583.20 gi|433592796|ref|YP_007282292.1| - 0.14 12.0 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Molybdopterin PF00384.22 gi|433592797|ref|YP_007282293.1| - 3.2e-35 121.9 0.0 8e-28 97.6 0.0 2.6 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|433592797|ref|YP_007282293.1| - 5.6e-05 23.1 0.1 0.00039 20.4 0.0 2.3 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|433592797|ref|YP_007282293.1| - 0.13 12.1 6.1 0.26 11.2 6.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.6 gi|433592798|ref|YP_007282294.1| - 3.2e-30 104.2 8.3 3.2e-30 104.2 8.3 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|433592798|ref|YP_007282294.1| - 1.6e-07 31.8 15.1 0.003 18.1 8.4 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433592798|ref|YP_007282294.1| - 9.2e-06 25.7 24.5 0.003 17.6 9.2 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|433592798|ref|YP_007282294.1| - 0.0006 19.9 20.5 0.01 16.0 0.5 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433592798|ref|YP_007282294.1| - 0.00086 19.4 24.1 0.0088 16.2 0.4 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|433592798|ref|YP_007282294.1| - 0.00087 19.3 26.1 0.00096 19.1 1.4 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|433592798|ref|YP_007282294.1| - 0.034 14.6 1.6 0.034 14.6 1.6 4.4 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4 PF00037.27 gi|433592798|ref|YP_007282294.1| - 0.036 13.9 1.6 0.036 13.9 1.6 4.8 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|433592798|ref|YP_007282294.1| - 0.059 13.5 0.8 0.059 13.5 0.8 4.8 4 2 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|433592798|ref|YP_007282294.1| - 0.071 13.6 0.0 0.071 13.6 0.0 4.1 3 2 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|433592798|ref|YP_007282294.1| - 0.18 12.8 20.5 3.1 8.8 0.3 3.5 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|433592798|ref|YP_007282294.1| - 0.28 11.8 0.1 0.28 11.8 0.1 3.9 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|433592798|ref|YP_007282294.1| - 0.4 11.3 21.6 0.45 11.1 0.1 3.9 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|433592798|ref|YP_007282294.1| - 2.3 9.3 34.1 2.6 9.2 0.8 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Nitrate_red_del PF02613.15 gi|433592799|ref|YP_007282295.1| - 3.9e-19 69.0 0.4 6e-19 68.4 0.1 1.5 2 0 0 2 2 2 1 Nitrate reductase delta subunit KH_2 PF07650.17 gi|433592800|ref|YP_007282296.1| - 4.3e-10 39.3 0.0 0.00098 18.9 0.0 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|433592800|ref|YP_007282296.1| - 6.2e-10 39.0 0.1 5e-09 36.1 0.0 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|433592800|ref|YP_007282296.1| - 1.1e-08 34.8 0.1 5.2e-07 29.4 0.0 2.2 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|433592800|ref|YP_007282296.1| - 0.0033 17.2 0.0 0.2 11.5 0.0 2.2 1 1 1 2 2 2 1 KH domain RNA_pol_Rpb1_5 PF04998.17 gi|433592801|ref|YP_007282297.1| - 7.9e-54 182.9 0.1 9.6e-54 182.6 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HHH_4 PF14490.6 gi|433592801|ref|YP_007282297.1| - 0.035 14.1 0.1 1.4 9.0 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain RNA_pol_Rpb1_1 PF04997.12 gi|433592802|ref|YP_007282298.1| - 5e-113 377.5 0.0 7.9e-113 376.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|433592802|ref|YP_007282298.1| - 2.2e-68 229.7 0.2 3.6e-68 229.0 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|433592802|ref|YP_007282298.1| - 1e-31 109.1 0.0 2.3e-31 107.9 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|433592802|ref|YP_007282298.1| - 4.9e-27 94.8 0.0 8.6e-27 94.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|433592802|ref|YP_007282298.1| - 2.7e-26 92.6 0.0 5.3e-26 91.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb2_6 PF00562.28 gi|433592803|ref|YP_007282299.1| - 5.6e-129 430.6 0.0 8.1e-129 430.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|433592803|ref|YP_007282299.1| - 2.5e-30 104.7 0.2 4.9e-30 103.8 0.2 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|433592803|ref|YP_007282299.1| - 6.7e-21 74.3 0.3 1.2e-20 73.5 0.3 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|433592803|ref|YP_007282299.1| - 1.3e-08 35.2 5.7 3.9e-08 33.7 5.7 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 OrfB_Zn_ribbon PF07282.11 gi|433592803|ref|YP_007282299.1| - 0.013 15.4 1.5 0.026 14.4 1.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|433592803|ref|YP_007282299.1| - 0.14 12.3 0.2 0.27 11.4 0.2 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.12 gi|433592803|ref|YP_007282299.1| - 0.29 11.3 2.6 0.52 10.5 2.6 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_Rpb2_1 PF04563.15 gi|433592804|ref|YP_007282300.1| - 3.7e-50 170.3 0.2 4.5e-50 170.0 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|433592804|ref|YP_007282300.1| - 1.3e-27 96.7 0.1 2e-27 96.0 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|433592804|ref|YP_007282300.1| - 2e-22 79.1 0.0 3.7e-22 78.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.19 gi|433592805|ref|YP_007282301.1| - 3.4e-25 87.7 0.5 3.8e-25 87.5 0.5 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.8 gi|433592805|ref|YP_007282301.1| - 0.0017 18.6 1.7 0.84 9.9 0.4 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF3006) PDDEXK_5 PF11645.8 gi|433592806|ref|YP_007282302.1| - 3.6e-45 153.3 0.1 4e-45 153.2 0.1 1.0 1 0 0 1 1 1 1 PD-(D/E)XK endonuclease TAXi_N PF14543.6 gi|433592806|ref|YP_007282302.1| - 0.036 14.3 0.1 0.041 14.1 0.1 1.2 1 0 0 1 1 1 0 Xylanase inhibitor N-terminal BAT PF15915.5 gi|433592807|ref|YP_007282303.1| - 8.5e-38 129.7 11.6 8.5e-38 129.7 11.6 3.2 3 1 1 4 4 4 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|433592807|ref|YP_007282303.1| - 2.9e-24 85.9 7.6 2.8e-14 53.6 1.3 2.7 2 0 0 2 2 2 2 GAF domain Response_reg PF00072.24 gi|433592807|ref|YP_007282303.1| - 6.2e-23 81.1 0.0 1.6e-22 79.8 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_10 PF04967.12 gi|433592807|ref|YP_007282303.1| - 1.3e-20 73.0 0.0 3.3e-20 71.6 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.6 gi|433592807|ref|YP_007282303.1| - 1.2e-10 41.8 0.0 0.00032 21.0 0.0 2.8 2 1 0 2 2 2 2 GAF domain GAF PF01590.26 gi|433592807|ref|YP_007282303.1| - 5.4e-06 27.1 0.1 0.00073 20.2 0.1 2.9 1 1 1 2 2 2 1 GAF domain OKR_DC_1_N PF03709.15 gi|433592807|ref|YP_007282303.1| - 0.00033 20.9 0.6 0.0029 17.8 0.0 2.9 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain KxDL PF10241.9 gi|433592807|ref|YP_007282303.1| - 0.14 12.5 2.5 9.9 6.5 0.2 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein PCMT PF01135.19 gi|433592808|ref|YP_007282304.1| - 6.2e-35 120.9 0.0 7.9e-35 120.5 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|433592808|ref|YP_007282304.1| - 4.1e-06 26.7 0.0 5.1e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|433592808|ref|YP_007282304.1| - 7.6e-06 25.6 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|433592808|ref|YP_007282304.1| - 3.2e-05 24.5 0.0 5.6e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|433592808|ref|YP_007282304.1| - 0.0028 16.8 0.1 0.0041 16.3 0.1 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_12 PF08242.12 gi|433592808|ref|YP_007282304.1| - 0.0035 18.0 0.0 0.0071 17.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|433592808|ref|YP_007282304.1| - 0.069 12.5 0.1 0.1 12.0 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltr_RsmB-F PF01189.17 gi|433592808|ref|YP_007282304.1| - 0.075 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F ACP_syn_III_C PF08541.10 gi|433592808|ref|YP_007282304.1| - 0.14 12.4 0.1 0.27 11.4 0.1 1.4 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PCMT PF01135.19 gi|433592809|ref|YP_007282305.1| - 1.7e-61 207.6 0.0 1.9e-61 207.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|433592809|ref|YP_007282305.1| - 2.2e-10 40.5 0.0 3.3e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433592809|ref|YP_007282305.1| - 1.9e-09 38.1 0.0 3.5e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|433592809|ref|YP_007282305.1| - 3.6e-05 23.2 0.0 5.2e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.12 gi|433592809|ref|YP_007282305.1| - 8.9e-05 23.1 0.0 0.00017 22.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433592809|ref|YP_007282305.1| - 0.00012 22.7 0.0 0.00019 22.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|433592809|ref|YP_007282305.1| - 0.001 18.8 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit MTS PF05175.14 gi|433592809|ref|YP_007282305.1| - 0.0015 18.1 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|433592809|ref|YP_007282305.1| - 0.011 16.7 0.0 0.02 15.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|433592809|ref|YP_007282305.1| - 0.016 15.0 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Fibrillarin PF01269.17 gi|433592809|ref|YP_007282305.1| - 0.016 14.3 0.0 0.023 13.8 0.0 1.1 1 0 0 1 1 1 0 Fibrillarin Methyltransf_18 PF12847.7 gi|433592809|ref|YP_007282305.1| - 0.017 15.1 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|433592809|ref|YP_007282305.1| - 0.021 14.8 0.0 0.032 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433592809|ref|YP_007282305.1| - 0.044 13.6 0.0 0.051 13.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|433592809|ref|YP_007282305.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DraK_HK_N PF18092.1 gi|433592810|ref|YP_007282306.1| - 0.011 16.1 3.4 2.5 8.6 0.1 2.4 2 0 0 2 2 2 0 DraK Histidine Kinase N-terminal domain Rubella_E1 PF05748.11 gi|433592810|ref|YP_007282306.1| - 0.074 11.9 0.0 0.097 11.5 0.0 1.2 1 0 0 1 1 1 0 Rubella membrane glycoprotein E1 zinc_ribbon_12 PF11331.8 gi|433592810|ref|YP_007282306.1| - 0.1 12.4 0.2 0.17 11.7 0.2 1.3 1 0 0 1 1 1 0 Probable zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433592810|ref|YP_007282306.1| - 0.1 12.7 2.9 4.1 7.6 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain HalOD2 PF18547.1 gi|433592810|ref|YP_007282306.1| - 0.11 12.4 1.1 0.32 11.0 1.1 1.8 1 1 0 1 1 1 0 Halobacterial output domain 2 zinc_ribbon_4 PF13717.6 gi|433592810|ref|YP_007282306.1| - 0.57 10.2 3.2 2.1 8.3 3.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-CSL PF05207.13 gi|433592810|ref|YP_007282306.1| - 0.94 9.2 4.5 1.8 8.3 2.4 2.5 2 1 0 2 2 2 0 CSL zinc finger LOR PF04525.12 gi|433592811|ref|YP_007282307.1| - 1.2e-06 28.2 0.3 0.00031 20.4 0.1 3.0 1 1 2 3 3 3 3 LURP-one-related Peptidase_M29 PF02073.15 gi|433592812|ref|YP_007282308.1| - 5.1e-13 48.6 0.3 6.1e-12 45.0 0.1 2.0 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Gp_dh_C PF02800.20 gi|433592813|ref|YP_007282309.1| - 1.2e-19 70.5 0.0 1.9e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|433592813|ref|YP_007282309.1| - 3.1e-09 37.0 0.0 8.6e-09 35.6 0.0 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|433592813|ref|YP_007282309.1| - 9.7e-06 25.9 0.1 6e-05 23.3 0.0 2.3 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|433592813|ref|YP_007282309.1| - 9.5e-05 23.0 0.1 0.00027 21.6 0.1 1.8 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|433592813|ref|YP_007282309.1| - 0.0014 18.0 0.1 0.0093 15.3 0.1 2.1 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|433592813|ref|YP_007282309.1| - 0.0027 18.0 0.0 0.0074 16.5 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain Semialdhyde_dh PF01118.24 gi|433592813|ref|YP_007282309.1| - 0.043 14.2 0.0 0.082 13.3 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|433592813|ref|YP_007282309.1| - 0.046 14.5 0.1 0.12 13.2 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.12 gi|433592813|ref|YP_007282309.1| - 0.12 11.9 0.1 1.8 8.1 0.1 2.3 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ArsA_HSP20 PF17886.1 gi|433592814|ref|YP_007282310.1| - 2.7e-19 68.5 0.0 3.7e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|433592814|ref|YP_007282310.1| - 1.9e-10 40.8 0.1 3.7e-09 36.7 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|433592814|ref|YP_007282310.1| - 4.3e-07 30.2 2.4 5.3e-07 29.9 2.4 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|433592814|ref|YP_007282310.1| - 0.0047 17.3 0.0 0.0065 16.9 0.0 1.2 1 0 0 1 1 1 1 PIH1 CS-like domain CS PF04969.16 gi|433592814|ref|YP_007282310.1| - 0.022 15.7 0.0 0.04 14.9 0.0 1.4 1 0 0 1 1 1 0 CS domain RimK PF08443.11 gi|433592815|ref|YP_007282311.1| - 1.1e-19 70.8 0.0 1.4e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|433592815|ref|YP_007282311.1| - 9e-11 41.5 0.0 1.3e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|433592815|ref|YP_007282311.1| - 1.8e-07 31.3 0.0 2.9e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|433592815|ref|YP_007282311.1| - 8.6e-05 21.9 0.0 0.0078 15.5 0.0 2.6 2 1 1 3 3 3 1 Sugar-transfer associated ATP-grasp TTL PF03133.15 gi|433592815|ref|YP_007282311.1| - 0.0045 16.1 0.0 0.04 13.1 0.0 1.9 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family CPSase_L_D2 PF02786.17 gi|433592815|ref|YP_007282311.1| - 0.0065 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_TupA PF14305.6 gi|433592815|ref|YP_007282311.1| - 0.024 14.4 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 TupA-like ATPgrasp R2K_3 PF14243.6 gi|433592815|ref|YP_007282311.1| - 0.045 13.8 0.3 0.064 13.3 0.3 1.3 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 Ribosomal_L16 PF00252.18 gi|433592816|ref|YP_007282312.1| - 6.9e-31 107.0 0.1 8e-31 106.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e TrmB PF01978.19 gi|433592817|ref|YP_007282313.1| - 0.00036 20.3 0.1 0.00045 20.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|433592817|ref|YP_007282313.1| - 0.00053 19.8 0.3 0.00069 19.5 0.3 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|433592817|ref|YP_007282313.1| - 0.058 13.9 0.0 0.077 13.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain COX5B PF01215.19 gi|433592817|ref|YP_007282313.1| - 0.068 12.9 0.0 0.068 12.9 0.0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit Vb CBS PF00571.28 gi|433592818|ref|YP_007282314.1| - 5.4e-24 84.4 3.4 8.4e-12 45.4 0.2 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|433592818|ref|YP_007282314.1| - 4.4e-14 52.4 9.2 2e-09 37.1 0.2 3.1 1 1 1 2 2 2 2 Peptidase family M50 FA_desaturase PF00487.24 gi|433592818|ref|YP_007282314.1| - 0.0018 18.2 2.3 1.1 9.0 0.1 2.2 2 0 0 2 2 2 2 Fatty acid desaturase Peptidase_M50B PF13398.6 gi|433592818|ref|YP_007282314.1| - 0.0054 16.4 0.1 0.0054 16.4 0.1 2.2 1 1 2 3 3 3 1 Peptidase M50B-like Peptidase_MA_2 PF13485.6 gi|433592818|ref|YP_007282314.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Peptidase MA superfamily DUF3267 PF11667.8 gi|433592818|ref|YP_007282314.1| - 0.25 11.6 3.7 0.15 12.3 0.5 2.1 2 0 0 2 2 2 0 Putative zincin peptidase ABC_tran PF00005.27 gi|433592819|ref|YP_007282315.1| - 2.6e-31 108.9 0.0 4.1e-31 108.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433592819|ref|YP_007282315.1| - 1.1e-14 55.0 2.3 1.7e-09 38.0 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|433592819|ref|YP_007282315.1| - 6.3e-09 36.4 0.0 2e-08 34.8 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|433592819|ref|YP_007282315.1| - 0.0015 18.3 0.0 0.0034 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|433592819|ref|YP_007282315.1| - 0.0046 17.5 0.1 0.01 16.4 0.0 1.6 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|433592819|ref|YP_007282315.1| - 0.013 15.3 0.0 5 6.8 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein SMC_N PF02463.19 gi|433592819|ref|YP_007282315.1| - 0.014 14.9 0.0 1.8 7.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|433592819|ref|YP_007282315.1| - 0.021 14.7 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|433592819|ref|YP_007282315.1| - 0.021 14.5 0.0 1.7 8.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 gi|433592819|ref|YP_007282315.1| - 0.05 13.4 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|433592819|ref|YP_007282315.1| - 0.075 12.8 0.1 0.42 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|433592819|ref|YP_007282315.1| - 0.078 13.1 0.3 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase MobB PF03205.14 gi|433592819|ref|YP_007282315.1| - 0.092 12.6 0.0 0.28 11.1 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|433592819|ref|YP_007282315.1| - 0.13 12.2 0.4 1.8 8.5 0.0 2.6 3 1 0 3 3 3 0 NTPase SRP54 PF00448.22 gi|433592819|ref|YP_007282315.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|433592819|ref|YP_007282315.1| - 0.15 11.6 0.1 0.25 10.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|433592819|ref|YP_007282315.1| - 0.2 11.4 0.1 0.6 9.9 0.1 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein FlbD PF06289.11 gi|433592819|ref|YP_007282315.1| - 0.21 11.2 1.2 0.93 9.1 0.3 2.2 2 0 0 2 2 2 0 Flagellar and Swarming motility proteins ABC2_membrane PF01061.24 gi|433592820|ref|YP_007282316.1| - 4.9e-30 104.5 14.2 6.5e-30 104.1 14.2 1.2 1 0 0 1 1 1 1 ABC-2 type transporter DUF4870 PF09685.10 gi|433592821|ref|YP_007282317.1| - 5.3e-22 78.0 2.9 6.2e-22 77.8 2.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) zinc_ribbon_2 PF13240.6 gi|433592821|ref|YP_007282317.1| - 2.3e-07 30.3 2.9 3.8e-07 29.6 2.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|433592821|ref|YP_007282317.1| - 7.7e-06 25.8 1.2 1.3e-05 25.1 1.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|433592821|ref|YP_007282317.1| - 1.2e-05 24.6 6.0 2.2e-05 23.7 6.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|433592821|ref|YP_007282317.1| - 0.0063 17.2 2.2 0.012 16.3 2.2 1.4 1 0 0 1 1 1 1 zinc-ribbon family UPF0547 PF10571.9 gi|433592821|ref|YP_007282317.1| - 0.0066 16.5 2.2 0.013 15.6 2.2 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|433592821|ref|YP_007282317.1| - 0.019 14.9 0.8 1.9 8.5 0.0 2.5 2 0 0 2 2 2 0 Nudix N-terminal VIT1 PF01988.19 gi|433592821|ref|YP_007282317.1| - 0.074 12.9 0.3 0.099 12.5 0.3 1.2 1 0 0 1 1 1 0 VIT family DUF35_N PF12172.8 gi|433592821|ref|YP_007282317.1| - 0.11 12.4 1.8 0.33 10.9 1.5 1.8 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2116 PF09889.9 gi|433592821|ref|YP_007282317.1| - 0.39 10.7 5.9 0.46 10.5 1.5 2.6 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) SdpI PF13630.6 gi|433592821|ref|YP_007282317.1| - 0.41 10.8 3.3 0.74 10.0 3.3 1.4 1 0 0 1 1 1 0 SdpI/YhfL protein family TF_Zn_Ribbon PF08271.12 gi|433592821|ref|YP_007282317.1| - 0.62 9.6 5.0 2 8.0 5.0 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding DHHC PF01529.20 gi|433592821|ref|YP_007282317.1| - 1 9.5 4.2 3.2 7.9 0.1 2.2 2 0 0 2 2 2 0 DHHC palmitoyltransferase ADH_N_2 PF16884.5 gi|433592822|ref|YP_007282318.1| - 7.8e-42 141.6 0.1 1.4e-41 140.7 0.1 1.4 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|433592822|ref|YP_007282318.1| - 1.4e-21 76.9 0.0 2e-21 76.3 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|433592822|ref|YP_007282318.1| - 2.4e-10 41.5 0.0 4.7e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Pro_CA PF00484.19 gi|433592823|ref|YP_007282319.1| - 7.8e-24 84.7 0.0 1.1e-23 84.3 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase DUF2309 PF10070.9 gi|433592824|ref|YP_007282320.1| - 1.4e-272 906.5 0.0 1.6e-272 906.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) DUF4404 PF14357.6 gi|433592824|ref|YP_007282320.1| - 1.2 9.9 3.0 1.1 10.0 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) Proton_antipo_M PF00361.20 gi|433592825|ref|YP_007282321.1| - 1.7e-40 139.1 17.3 1.7e-40 139.1 17.3 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|433592825|ref|YP_007282321.1| - 1.5e-12 47.4 0.1 1.5e-12 47.4 0.1 2.6 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HTH_24 PF13412.6 gi|433592826|ref|YP_007282322.1| - 1.1e-14 53.7 0.5 1.8e-14 53.0 0.5 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|433592826|ref|YP_007282322.1| - 1.3e-10 40.9 2.5 2.3e-10 40.1 2.5 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|433592826|ref|YP_007282322.1| - 1.1e-08 34.8 0.1 2.7e-08 33.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|433592826|ref|YP_007282322.1| - 3.8e-06 26.6 0.0 7.1e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433592826|ref|YP_007282322.1| - 6.7e-06 25.9 0.0 1.3e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|433592826|ref|YP_007282322.1| - 2.5e-05 24.0 0.0 5.2e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|433592826|ref|YP_007282322.1| - 3.5e-05 23.8 0.0 7.4e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|433592826|ref|YP_007282322.1| - 6.3e-05 23.1 0.2 0.00016 21.8 0.2 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|433592826|ref|YP_007282322.1| - 0.00019 21.1 0.2 0.014 15.2 0.1 2.3 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|433592826|ref|YP_007282322.1| - 0.00022 21.5 0.1 0.00046 20.5 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|433592826|ref|YP_007282322.1| - 0.00038 20.1 0.2 0.00078 19.1 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|433592826|ref|YP_007282322.1| - 0.0012 18.8 0.1 0.0026 17.7 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|433592826|ref|YP_007282322.1| - 0.0017 18.1 0.1 0.0031 17.2 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.6 gi|433592826|ref|YP_007282322.1| - 0.0017 18.8 0.0 0.0032 17.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HrcA_DNA-bdg PF03444.15 gi|433592826|ref|YP_007282322.1| - 0.0021 17.7 0.0 0.0037 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GntR PF00392.21 gi|433592826|ref|YP_007282322.1| - 0.0025 17.4 0.1 0.0051 16.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Mga PF08280.11 gi|433592826|ref|YP_007282322.1| - 0.0037 17.3 0.0 0.0064 16.5 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Nuc_N PF14448.6 gi|433592826|ref|YP_007282322.1| - 0.0046 16.8 0.2 0.0084 15.9 0.2 1.4 1 0 0 1 1 1 1 Nuclease N terminal MarR PF01047.22 gi|433592826|ref|YP_007282322.1| - 0.0057 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|433592826|ref|YP_007282322.1| - 0.0062 16.0 0.3 0.011 15.2 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_CodY PF08222.11 gi|433592826|ref|YP_007282322.1| - 0.0063 16.0 0.6 0.03 13.9 0.2 2.1 2 0 0 2 2 2 1 CodY helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|433592826|ref|YP_007282322.1| - 0.0066 16.4 0.3 0.015 15.3 0.3 1.6 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_12 PF08461.10 gi|433592826|ref|YP_007282322.1| - 0.008 16.1 0.3 0.036 14.0 0.3 2.1 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain DUF2250 PF10007.9 gi|433592826|ref|YP_007282322.1| - 0.0099 16.0 0.1 0.048 13.8 0.1 1.9 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|433592826|ref|YP_007282322.1| - 0.022 14.7 0.1 0.038 13.9 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|433592826|ref|YP_007282322.1| - 0.033 14.3 0.1 0.061 13.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_antitermQ PF06530.12 gi|433592826|ref|YP_007282322.1| - 0.073 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Phage antitermination protein Q HTH_29 PF13551.6 gi|433592826|ref|YP_007282322.1| - 0.088 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_1 PF00126.27 gi|433592826|ref|YP_007282322.1| - 0.13 12.2 0.3 0.81 9.7 0.3 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Ribosomal_S25 PF03297.15 gi|433592826|ref|YP_007282322.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 S25 ribosomal protein DUF805 PF05656.14 gi|433592827|ref|YP_007282323.1| - 0.0071 16.7 0.1 0.0083 16.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF805) OppC_N PF12911.7 gi|433592827|ref|YP_007282323.1| - 0.2 11.7 5.5 1.2 9.2 1.8 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C CSD PF00313.22 gi|433592828|ref|YP_007282324.1| - 5.2e-20 71.1 0.0 5.7e-20 70.9 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|433592828|ref|YP_007282324.1| - 0.05 13.3 2.5 0.063 13.0 2.5 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain Cupin_2 PF07883.11 gi|433592830|ref|YP_007282326.1| - 1.1e-17 63.5 0.2 1.4e-17 63.2 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|433592830|ref|YP_007282326.1| - 1.7e-07 31.0 0.0 2.5e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|433592830|ref|YP_007282326.1| - 7.2e-07 29.2 0.0 9.3e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|433592830|ref|YP_007282326.1| - 0.00016 21.6 0.0 0.0002 21.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|433592830|ref|YP_007282326.1| - 0.001 18.7 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|433592830|ref|YP_007282326.1| - 0.0052 17.0 0.0 0.0067 16.6 0.0 1.1 1 0 0 1 1 1 1 Mif2/CENP-C like ARD PF03079.14 gi|433592830|ref|YP_007282326.1| - 0.0083 16.3 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_7 PF12973.7 gi|433592830|ref|YP_007282326.1| - 0.011 15.6 0.0 0.014 15.3 0.0 1.1 1 0 0 1 1 1 0 ChrR Cupin-like domain Cupin_6 PF12852.7 gi|433592830|ref|YP_007282326.1| - 0.086 12.6 0.0 0.096 12.4 0.0 1.2 1 0 0 1 1 1 0 Cupin DUF4437 PF14499.6 gi|433592830|ref|YP_007282326.1| - 0.17 11.0 0.0 0.19 10.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4437) FecCD PF01032.18 gi|433592831|ref|YP_007282327.1| - 1.3e-84 283.9 36.8 1.7e-84 283.5 36.8 1.1 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|433592832|ref|YP_007282328.1| - 3e-31 108.8 0.0 4e-31 108.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433592832|ref|YP_007282328.1| - 3e-14 53.5 2.8 1.5e-06 28.2 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|433592832|ref|YP_007282328.1| - 1.6e-11 44.1 0.3 2.9e-10 40.0 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 gi|433592832|ref|YP_007282328.1| - 1.5e-06 27.3 0.1 0.0017 17.3 0.0 2.9 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|433592832|ref|YP_007282328.1| - 2.1e-06 27.4 0.0 4.4e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|433592832|ref|YP_007282328.1| - 1.8e-05 24.7 0.0 8.7e-05 22.4 0.0 1.8 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|433592832|ref|YP_007282328.1| - 5.4e-05 23.5 0.4 0.00028 21.2 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433592832|ref|YP_007282328.1| - 0.00011 22.6 0.2 0.00021 21.7 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|433592832|ref|YP_007282328.1| - 0.00013 22.5 0.0 0.00027 21.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|433592832|ref|YP_007282328.1| - 0.00027 20.7 0.1 0.00054 19.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|433592832|ref|YP_007282328.1| - 0.00036 20.4 0.1 0.022 14.5 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|433592832|ref|YP_007282328.1| - 0.00037 21.1 0.0 0.00082 19.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|433592832|ref|YP_007282328.1| - 0.00054 19.6 0.4 0.0036 16.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain HD PF01966.22 gi|433592832|ref|YP_007282328.1| - 0.00056 20.1 0.0 0.0012 19.0 0.0 1.6 1 0 0 1 1 1 1 HD domain Mg_chelatase PF01078.21 gi|433592832|ref|YP_007282328.1| - 0.002 17.6 0.1 1.5 8.2 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|433592832|ref|YP_007282328.1| - 0.0022 17.9 0.0 0.0044 16.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 gi|433592832|ref|YP_007282328.1| - 0.0027 17.9 0.3 0.0081 16.3 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|433592832|ref|YP_007282328.1| - 0.0044 17.0 0.0 0.0074 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|433592832|ref|YP_007282328.1| - 0.0077 16.7 0.0 0.016 15.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|433592832|ref|YP_007282328.1| - 0.0081 15.5 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.6 gi|433592832|ref|YP_007282328.1| - 0.013 15.8 0.0 0.03 14.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|433592832|ref|YP_007282328.1| - 0.015 15.3 0.0 0.046 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|433592832|ref|YP_007282328.1| - 0.016 15.2 0.1 0.073 13.2 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF2813 PF11398.8 gi|433592832|ref|YP_007282328.1| - 0.018 14.3 0.0 0.025 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) KAP_NTPase PF07693.14 gi|433592832|ref|YP_007282328.1| - 0.019 14.2 0.0 0.029 13.6 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Rad17 PF03215.15 gi|433592832|ref|YP_007282328.1| - 0.021 14.7 0.1 0.044 13.7 0.0 1.5 2 0 0 2 2 1 0 Rad17 P-loop domain cobW PF02492.19 gi|433592832|ref|YP_007282328.1| - 0.024 14.2 0.3 0.11 12.0 0.1 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|433592832|ref|YP_007282328.1| - 0.024 14.6 0.1 0.07 13.0 0.0 1.8 2 0 0 2 2 2 0 NACHT domain G-alpha PF00503.20 gi|433592832|ref|YP_007282328.1| - 0.024 13.8 0.0 0.033 13.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit SRP54 PF00448.22 gi|433592832|ref|YP_007282328.1| - 0.026 14.2 0.0 0.061 12.9 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 gi|433592832|ref|YP_007282328.1| - 0.03 14.7 0.0 0.056 13.8 0.0 1.6 1 1 0 1 1 1 0 RNA helicase AAA_27 PF13514.6 gi|433592832|ref|YP_007282328.1| - 0.05 13.2 0.0 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|433592832|ref|YP_007282328.1| - 0.061 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MukB PF04310.12 gi|433592832|ref|YP_007282328.1| - 0.074 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal KTI12 PF08433.10 gi|433592832|ref|YP_007282328.1| - 0.079 12.4 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF815 PF05673.13 gi|433592832|ref|YP_007282328.1| - 0.1 11.8 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TniB PF05621.11 gi|433592832|ref|YP_007282328.1| - 0.14 11.6 0.1 4 6.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_24 PF13479.6 gi|433592832|ref|YP_007282328.1| - 0.15 11.8 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|433592832|ref|YP_007282328.1| - 0.15 11.8 0.1 0.29 10.8 0.1 1.4 1 0 0 1 1 1 0 Cytidylate kinase AAA_7 PF12775.7 gi|433592832|ref|YP_007282328.1| - 0.17 11.4 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region VirE PF05272.11 gi|433592832|ref|YP_007282328.1| - 0.17 11.6 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Virulence-associated protein E Peripla_BP_2 PF01497.18 gi|433592833|ref|YP_007282329.1| - 1.7e-19 70.3 0.2 2.5e-19 69.8 0.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|433592833|ref|YP_007282329.1| - 0.0047 16.7 3.1 0.009 15.8 3.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PhoLip_ATPase_N PF16209.5 gi|433592833|ref|YP_007282329.1| - 0.22 11.2 0.0 0.35 10.6 0.0 1.3 1 0 0 1 1 1 0 Phospholipid-translocating ATPase N-terminal Peripla_BP_2 PF01497.18 gi|433592834|ref|YP_007282330.1| - 2.1e-19 70.1 0.1 3.1e-19 69.5 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|433592834|ref|YP_007282330.1| - 0.0019 18.0 0.3 0.0031 17.3 0.3 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence MCPsignal PF00015.21 gi|433592835|ref|YP_007282331.1| - 5.9e-26 91.3 52.6 5.4e-25 88.2 22.3 3.9 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|433592835|ref|YP_007282331.1| - 2e-13 50.7 0.1 2e-13 50.7 0.1 3.5 2 1 1 3 3 3 1 Cache domain HAMP PF00672.25 gi|433592835|ref|YP_007282331.1| - 2.4e-13 50.2 16.0 6.5e-11 42.4 2.2 5.1 4 1 0 4 4 4 2 HAMP domain DUF948 PF06103.11 gi|433592835|ref|YP_007282331.1| - 0.00051 20.2 33.7 0.078 13.2 0.8 6.8 2 1 5 7 7 6 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|433592835|ref|YP_007282331.1| - 0.0042 17.1 21.9 0.05 13.6 1.9 5.0 3 2 1 5 5 5 2 Protein of unknown function (DUF1664) DUF2203 PF09969.9 gi|433592835|ref|YP_007282331.1| - 0.05 14.3 0.7 0.05 14.3 0.7 5.1 2 2 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) Fzo_mitofusin PF04799.13 gi|433592835|ref|YP_007282331.1| - 0.1 12.1 16.5 0.058 12.9 1.1 4.2 3 1 3 6 6 6 0 fzo-like conserved region IFT57 PF10498.9 gi|433592835|ref|YP_007282331.1| - 0.26 10.2 14.5 0.16 10.9 1.7 2.9 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 NPV_P10 PF05531.12 gi|433592835|ref|YP_007282331.1| - 0.42 11.1 19.7 4.8 7.7 1.4 5.3 1 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Prefoldin_2 PF01920.20 gi|433592835|ref|YP_007282331.1| - 0.84 9.6 9.2 32 4.5 0.2 4.6 4 0 0 4 4 4 0 Prefoldin subunit Fib_alpha PF08702.10 gi|433592835|ref|YP_007282331.1| - 1 9.5 10.9 16 5.6 0.4 4.3 2 1 2 5 5 5 0 Fibrinogen alpha/beta chain family AAA_13 PF13166.6 gi|433592835|ref|YP_007282331.1| - 1.5 7.4 25.2 0.12 11.0 5.3 2.5 1 1 0 2 2 2 0 AAA domain Rx_N PF18052.1 gi|433592835|ref|YP_007282331.1| - 1.6 9.1 22.6 0.57 10.5 3.0 5.0 3 2 2 5 5 5 0 Rx N-terminal domain CorA PF01544.18 gi|433592835|ref|YP_007282331.1| - 7.6 5.8 26.0 3.1 7.0 1.2 4.1 2 1 1 4 4 4 0 CorA-like Mg2+ transporter protein YabA PF06156.13 gi|433592835|ref|YP_007282331.1| - 8.3 7.1 6.7 40 4.9 0.1 3.9 2 1 2 4 4 4 0 Initiation control protein YabA DEAD PF00270.29 gi|433592836|ref|YP_007282332.1| - 8e-22 77.8 0.0 1.5e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|433592836|ref|YP_007282332.1| - 8.8e-15 55.0 0.0 1.7e-14 54.1 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|433592836|ref|YP_007282332.1| - 2.6e-09 37.3 0.0 4.6e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF835 PF05763.12 gi|433592837|ref|YP_007282333.1| - 0.0081 15.9 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) zf-NF-X1 PF01422.17 gi|433592837|ref|YP_007282333.1| - 0.14 12.2 0.9 0.25 11.5 0.9 1.4 1 0 0 1 1 1 0 NF-X1 type zinc finger BofA PF07441.11 gi|433592838|ref|YP_007282334.1| - 2.5e-08 34.0 20.4 3e-08 33.7 20.4 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA PCNA_N PF00705.18 gi|433592839|ref|YP_007282335.1| - 1.4e-06 28.1 0.7 1.8e-05 24.5 0.1 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|433592839|ref|YP_007282335.1| - 4.6e-06 26.8 0.1 1.3e-05 25.4 0.0 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain DUF3900 PF13039.6 gi|433592841|ref|YP_007282337.1| - 8.9e-06 25.8 0.0 1.2e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3900) DUF3898 PF13037.6 gi|433592841|ref|YP_007282337.1| - 0.025 14.7 0.1 0.045 13.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3898) DDE_Tnp_IS66 PF03050.14 gi|433592842|ref|YP_007282338.1| - 2.7e-49 168.2 0.1 2.7e-49 168.2 0.1 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.12 gi|433592842|ref|YP_007282338.1| - 7.4e-09 36.1 7.8 2e-08 34.7 7.8 1.8 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.7 gi|433592842|ref|YP_007282338.1| - 9e-06 26.0 5.0 9e-06 26.0 5.0 2.7 3 0 0 3 3 1 1 zinc-finger binding domain of transposase IS66 MscS_porin PF12795.7 gi|433592842|ref|YP_007282338.1| - 9.7e-06 25.3 6.6 1.7e-05 24.5 6.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.16 gi|433592842|ref|YP_007282338.1| - 0.00055 20.4 7.2 0.0011 19.4 7.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF16 UPF0242 PF06785.11 gi|433592842|ref|YP_007282338.1| - 0.0015 18.7 13.2 0.0025 17.9 13.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus HSBP1 PF06825.12 gi|433592842|ref|YP_007282338.1| - 0.0024 17.7 6.2 0.016 15.0 0.8 2.6 1 1 0 2 2 2 1 Heat shock factor binding protein 1 SKA1 PF07160.12 gi|433592842|ref|YP_007282338.1| - 0.0035 17.2 1.0 0.0057 16.5 1.0 1.3 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 1 Herpes_UL14 PF03580.14 gi|433592842|ref|YP_007282338.1| - 0.0048 17.2 1.4 0.0088 16.3 1.4 1.4 1 0 0 1 1 1 1 Herpesvirus UL14-like protein Atg14 PF10186.9 gi|433592842|ref|YP_007282338.1| - 0.018 14.2 7.6 0.028 13.5 7.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DDE_Tnp_IS240 PF13610.6 gi|433592842|ref|YP_007282338.1| - 0.019 15.2 2.0 0.087 13.1 0.0 2.4 2 1 0 2 2 2 0 DDE domain YkyA PF10368.9 gi|433592842|ref|YP_007282338.1| - 0.021 14.5 9.5 0.035 13.8 9.5 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein HemX PF04375.14 gi|433592842|ref|YP_007282338.1| - 0.024 13.9 4.1 0.038 13.3 4.1 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase PKcGMP_CC PF16808.5 gi|433592842|ref|YP_007282338.1| - 0.026 14.4 26.3 0.13 12.1 6.8 2.6 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Fmp27_WPPW PF10359.9 gi|433592842|ref|YP_007282338.1| - 0.031 13.1 5.6 0.049 12.5 5.6 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Exonuc_VII_L PF02601.15 gi|433592842|ref|YP_007282338.1| - 0.036 13.6 3.6 0.064 12.8 3.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit ATG16 PF08614.11 gi|433592842|ref|YP_007282338.1| - 0.051 13.8 10.6 0.1 12.8 10.6 1.5 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|433592842|ref|YP_007282338.1| - 0.061 12.0 8.2 0.088 11.4 8.2 1.1 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|433592842|ref|YP_007282338.1| - 0.099 12.7 2.7 0.25 11.4 2.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon GAS PF13851.6 gi|433592842|ref|YP_007282338.1| - 0.11 11.9 9.7 0.2 11.0 9.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cortex-I_coil PF09304.10 gi|433592842|ref|YP_007282338.1| - 0.11 12.7 10.5 0.23 11.7 10.5 1.5 1 0 0 1 1 1 0 Cortexillin I, coiled coil Phage_GPO PF05929.11 gi|433592842|ref|YP_007282338.1| - 0.11 12.1 3.1 0.18 11.4 3.1 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF3552 PF12072.8 gi|433592842|ref|YP_007282338.1| - 0.11 11.9 15.6 0.2 11.1 15.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Terminase_4 PF05119.12 gi|433592842|ref|YP_007282338.1| - 0.14 12.6 0.7 0.73 10.3 0.2 2.3 2 0 0 2 2 2 0 Phage terminase, small subunit DUF1664 PF07889.12 gi|433592842|ref|YP_007282338.1| - 0.15 12.1 5.3 0.3 11.1 5.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|433592842|ref|YP_007282338.1| - 0.15 10.9 11.6 0.17 10.7 10.5 1.6 2 0 0 2 2 1 0 Spc7 kinetochore protein FliD_C PF07195.12 gi|433592842|ref|YP_007282338.1| - 0.17 11.3 3.8 0.26 10.7 3.8 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TMF_DNA_bd PF12329.8 gi|433592842|ref|YP_007282338.1| - 0.17 11.9 12.6 0.34 10.9 12.6 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.10 gi|433592842|ref|YP_007282338.1| - 0.18 12.0 5.5 0.39 10.9 5.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family CSN5_C PF18323.1 gi|433592842|ref|YP_007282338.1| - 0.19 12.7 0.7 5.4 8.0 0.8 2.6 2 0 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain FAM76 PF16046.5 gi|433592842|ref|YP_007282338.1| - 0.23 10.8 4.0 0.37 10.1 4.0 1.3 1 0 0 1 1 1 0 FAM76 protein WASH_WAHD PF11945.8 gi|433592842|ref|YP_007282338.1| - 0.27 10.7 7.2 0.39 10.2 7.2 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex DUF724 PF05266.14 gi|433592842|ref|YP_007282338.1| - 0.27 11.0 6.4 0.46 10.3 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Allexi_40kDa PF05549.11 gi|433592842|ref|YP_007282338.1| - 0.32 10.5 2.8 0.55 9.7 2.8 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3584 PF12128.8 gi|433592842|ref|YP_007282338.1| - 0.36 8.3 7.2 0.51 7.8 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TMPIT PF07851.13 gi|433592842|ref|YP_007282338.1| - 0.36 10.0 4.1 0.57 9.4 4.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein Flagellin_C PF00700.21 gi|433592842|ref|YP_007282338.1| - 0.39 11.1 1.2 0.79 10.1 1.2 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region ACCA PF03255.14 gi|433592842|ref|YP_007282338.1| - 0.5 10.2 5.0 1.3 8.9 5.0 1.7 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1910 PF08928.10 gi|433592842|ref|YP_007282338.1| - 0.66 10.0 3.8 1.7 8.6 3.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1910) LUC7 PF03194.15 gi|433592842|ref|YP_007282338.1| - 0.69 9.5 7.5 1.4 8.5 7.5 1.4 1 0 0 1 1 1 0 LUC7 N_terminus zf-FPG_IleRS PF06827.14 gi|433592842|ref|YP_007282338.1| - 0.81 9.6 4.3 8.7 6.3 0.2 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS ExsD PF16806.5 gi|433592842|ref|YP_007282338.1| - 1 9.3 5.1 14 5.6 4.3 2.1 2 0 0 2 2 2 0 Antiactivator protein ExsD DUF4407 PF14362.6 gi|433592842|ref|YP_007282338.1| - 1 8.7 3.5 1.7 7.9 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RmuC PF02646.16 gi|433592842|ref|YP_007282338.1| - 1.1 8.4 7.0 1.7 7.7 7.0 1.2 1 0 0 1 1 1 0 RmuC family FemAB PF02388.16 gi|433592842|ref|YP_007282338.1| - 1.1 8.0 6.1 1.7 7.4 6.1 1.1 1 0 0 1 1 1 0 FemAB family Fzo_mitofusin PF04799.13 gi|433592842|ref|YP_007282338.1| - 1.4 8.4 6.1 2.5 7.6 6.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region Zn-ribbon_8 PF09723.10 gi|433592842|ref|YP_007282338.1| - 1.6 8.9 5.5 14 5.9 0.8 2.7 2 0 0 2 2 2 0 Zinc ribbon domain DUF1465 PF07323.12 gi|433592842|ref|YP_007282338.1| - 1.8 8.4 6.9 1.4 8.7 3.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1465) DUF3450 PF11932.8 gi|433592842|ref|YP_007282338.1| - 2.1 7.6 15.5 1.5 8.1 10.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) DUF2203 PF09969.9 gi|433592842|ref|YP_007282338.1| - 2.1 9.1 8.1 5.8 7.7 6.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 gi|433592842|ref|YP_007282338.1| - 2.3 6.1 4.9 3.2 5.6 4.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MPS2 PF17060.5 gi|433592842|ref|YP_007282338.1| - 2.4 7.4 6.1 3.7 6.7 6.1 1.2 1 0 0 1 1 1 0 Monopolar spindle protein 2 Kre28 PF17097.5 gi|433592842|ref|YP_007282338.1| - 4 6.3 12.8 0.37 9.7 8.3 1.4 2 0 0 2 2 1 0 Spindle pole body component ABC_tran_CTD PF16326.5 gi|433592842|ref|YP_007282338.1| - 6.3 7.1 22.3 1 9.7 16.9 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain DLP_helical PF18709.1 gi|433592842|ref|YP_007282338.1| - 6.7 5.8 8.2 12 5.0 8.2 1.3 1 0 0 1 1 1 0 Dynamin-like helical domain DUF502 PF04367.13 gi|433592845|ref|YP_007282341.1| - 9.7e-24 83.3 0.0 9.7e-24 83.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF502) MCM PF00493.23 gi|433592846|ref|YP_007282342.1| - 4.2e-86 287.7 0.0 2.7e-65 219.6 0.0 2.2 2 0 0 2 2 2 2 MCM P-loop domain MCM_OB PF17207.3 gi|433592846|ref|YP_007282342.1| - 7.6e-36 122.7 0.2 1.4e-35 121.8 0.2 1.5 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|433592846|ref|YP_007282342.1| - 4e-29 100.9 2.3 1.9e-28 98.7 1.3 2.7 4 0 0 4 4 3 1 MCM AAA-lid domain LAGLIDADG_3 PF14528.6 gi|433592846|ref|YP_007282342.1| - 5.4e-26 90.7 0.6 7.4e-15 55.0 0.5 3.1 3 0 0 3 3 2 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|433592846|ref|YP_007282342.1| - 2.4e-23 82.6 0.0 5.5e-23 81.4 0.0 1.7 1 0 0 1 1 1 1 Intein splicing domain MCM_N PF14551.6 gi|433592846|ref|YP_007282342.1| - 7.6e-09 36.1 0.7 7.6e-09 36.1 0.7 3.6 3 1 1 4 4 4 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|433592846|ref|YP_007282342.1| - 9.3e-08 31.7 0.0 1.3e-05 24.7 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_3 PF01381.22 gi|433592846|ref|YP_007282342.1| - 2.3e-07 30.8 0.0 6.3e-07 29.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|433592846|ref|YP_007282342.1| - 7.7e-06 26.2 0.3 7.7e-06 26.2 0.3 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain Hom_end PF05204.14 gi|433592846|ref|YP_007282342.1| - 1.2e-05 25.4 0.2 0.09 13.0 0.0 2.5 1 1 1 2 2 2 2 Homing endonuclease Hint PF01079.20 gi|433592846|ref|YP_007282342.1| - 0.0058 16.2 0.0 0.083 12.4 0.0 2.2 2 0 0 2 2 2 1 Hint module AAA_5 PF07728.14 gi|433592846|ref|YP_007282342.1| - 0.0069 16.4 0.0 0.91 9.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|433592846|ref|YP_007282342.1| - 0.018 14.7 0.1 0.4 10.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain HTH_19 PF12844.7 gi|433592846|ref|YP_007282342.1| - 0.038 14.0 0.0 0.17 11.9 0.0 2.2 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIB PF00382.19 gi|433592847|ref|YP_007282343.1| - 1.9e-22 79.1 0.6 2.1e-12 46.9 0.2 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433592847|ref|YP_007282343.1| - 3.6e-11 42.4 2.1 6.2e-11 41.6 2.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|433592847|ref|YP_007282343.1| - 0.034 14.2 0.4 0.066 13.2 0.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|433592847|ref|YP_007282343.1| - 0.04 13.9 0.3 0.077 12.9 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|433592847|ref|YP_007282343.1| - 0.088 12.8 0.4 0.15 12.0 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-NADH-PPase PF09297.11 gi|433592847|ref|YP_007282343.1| - 1.9 8.2 4.6 13 5.6 0.1 2.9 2 1 1 3 3 3 0 NADH pyrophosphatase zinc ribbon domain PALP PF00291.25 gi|433592849|ref|YP_007282345.1| - 3.5e-69 233.4 5.0 4.2e-69 233.2 5.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.16 gi|433592849|ref|YP_007282345.1| - 0.11 12.9 0.1 0.17 12.2 0.1 1.3 1 0 0 1 1 1 0 C1 domain CENP-N PF05238.13 gi|433592849|ref|YP_007282345.1| - 0.21 10.8 0.0 7.6 5.7 0.0 2.0 2 0 0 2 2 2 0 Kinetochore protein CHL4 like TrmB PF01978.19 gi|433592850|ref|YP_007282346.1| - 1.2e-12 47.5 0.0 1.7e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|433592850|ref|YP_007282346.1| - 1.6e-06 27.8 0.6 4.7e-06 26.3 0.2 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433592850|ref|YP_007282346.1| - 1.7e-06 27.8 0.2 2.8e-06 27.1 0.2 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|433592850|ref|YP_007282346.1| - 1.6e-05 24.7 0.0 2.9e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|433592850|ref|YP_007282346.1| - 2.7e-05 24.0 0.0 4.7e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|433592850|ref|YP_007282346.1| - 3.5e-05 23.3 0.0 6.2e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|433592850|ref|YP_007282346.1| - 0.00029 20.8 0.2 0.00045 20.2 0.2 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|433592850|ref|YP_007282346.1| - 0.00045 19.8 0.2 0.00091 18.8 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|433592850|ref|YP_007282346.1| - 0.0022 18.5 0.6 0.017 15.6 0.2 2.0 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|433592850|ref|YP_007282346.1| - 0.0036 17.2 0.1 0.0063 16.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|433592850|ref|YP_007282346.1| - 0.0056 16.7 0.1 0.012 15.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|433592850|ref|YP_007282346.1| - 0.018 15.0 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|433592850|ref|YP_007282346.1| - 0.019 14.7 0.1 0.035 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.11 gi|433592850|ref|YP_007282346.1| - 0.027 14.3 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_29 PF13551.6 gi|433592850|ref|YP_007282346.1| - 0.06 13.4 0.0 0.16 12.0 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn helix HTH_23 PF13384.6 gi|433592850|ref|YP_007282346.1| - 0.063 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|433592850|ref|YP_007282346.1| - 0.12 12.6 0.0 0.48 10.7 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF5605 PF18310.1 gi|433592850|ref|YP_007282346.1| - 0.15 11.9 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5605) Phage_rep_org_N PF09681.10 gi|433592850|ref|YP_007282346.1| - 0.17 11.8 0.0 0.33 10.9 0.0 1.6 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DDE_Tnp_IS66 PF03050.14 gi|433592851|ref|YP_007282347.1| - 1.7e-51 175.4 0.9 2.4e-51 174.9 0.9 1.2 1 0 0 1 1 1 1 Transposase IS66 family zf-IS66 PF13005.7 gi|433592851|ref|YP_007282347.1| - 8.9e-05 22.8 5.4 0.0021 18.4 0.9 2.9 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.6 gi|433592851|ref|YP_007282347.1| - 0.0011 19.3 1.5 0.029 14.6 0.0 2.9 3 0 0 3 3 3 1 DDE domain SOGA PF11365.8 gi|433592851|ref|YP_007282347.1| - 0.0031 18.6 3.7 0.012 16.8 0.1 2.4 2 0 0 2 2 2 1 Protein SOGA SlyX PF04102.12 gi|433592851|ref|YP_007282347.1| - 0.13 12.9 7.8 5.2 7.7 0.2 2.9 2 0 0 2 2 2 0 SlyX Csm1_N PF18504.1 gi|433592851|ref|YP_007282347.1| - 4.7 7.6 12.1 0.079 13.3 1.8 2.7 3 0 0 3 3 3 0 Csm1 N-terminal domain OTCace PF00185.24 gi|433592853|ref|YP_007282349.1| - 5.4e-53 179.3 0.0 7.4e-53 178.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|433592853|ref|YP_007282349.1| - 2e-51 173.9 0.0 2.9e-51 173.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Peptidase_M20 PF01546.28 gi|433592854|ref|YP_007282350.1| - 7.5e-26 91.1 0.3 9.9e-26 90.7 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|433592854|ref|YP_007282350.1| - 4.7e-05 23.3 0.0 7.7e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|433592854|ref|YP_007282350.1| - 0.003 17.3 0.1 0.0078 15.9 0.1 1.7 1 1 0 1 1 1 1 Peptidase family M28 Aminotran_3 PF00202.21 gi|433592855|ref|YP_007282351.1| - 2.3e-102 342.7 0.0 3e-102 342.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|433592855|ref|YP_007282351.1| - 0.035 13.4 0.0 0.065 12.5 0.0 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase DUF3884 PF13024.6 gi|433592855|ref|YP_007282351.1| - 0.25 10.9 0.1 12 5.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3884) AA_kinase PF00696.28 gi|433592856|ref|YP_007282352.1| - 5.6e-33 114.5 4.4 6.7e-33 114.3 4.4 1.1 1 0 0 1 1 1 1 Amino acid kinase family HlyD PF00529.20 gi|433592856|ref|YP_007282352.1| - 0.12 12.2 0.1 1.2 9.1 0.0 2.2 2 0 0 2 2 2 0 HlyD membrane-fusion protein of T1SS GCV_H PF01597.19 gi|433592856|ref|YP_007282352.1| - 0.21 11.5 1.4 0.54 10.2 0.1 2.1 2 0 0 2 2 2 0 Glycine cleavage H-protein Semialdhyde_dh PF01118.24 gi|433592857|ref|YP_007282353.1| - 1.1e-27 96.9 0.0 2.3e-27 95.8 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|433592857|ref|YP_007282353.1| - 1.2e-07 32.0 0.0 1.9e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain RimK PF08443.11 gi|433592858|ref|YP_007282354.1| - 4.5e-25 88.3 0.0 6.2e-25 87.9 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|433592858|ref|YP_007282354.1| - 2.2e-11 44.1 0.0 3.1e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|433592858|ref|YP_007282354.1| - 8e-08 31.9 0.0 1.9e-07 30.7 0.0 1.5 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp PF02222.22 gi|433592858|ref|YP_007282354.1| - 2.3e-06 27.3 0.1 5.6e-05 22.8 0.0 2.7 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|433592858|ref|YP_007282354.1| - 1.4e-05 24.7 0.0 4.4e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|433592858|ref|YP_007282354.1| - 2.7e-05 23.7 0.0 0.00041 19.9 0.0 2.4 1 1 1 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|433592858|ref|YP_007282354.1| - 9.3e-05 21.8 0.0 0.0058 15.9 0.0 2.4 3 0 0 3 3 3 1 Sugar-transfer associated ATP-grasp DNA_RNApol_7kD PF03604.13 gi|433592859|ref|YP_007282355.1| - 0.0014 18.2 1.8 0.0042 16.7 1.8 1.7 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|433592859|ref|YP_007282355.1| - 0.0038 16.9 0.5 2.3 8.1 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|433592859|ref|YP_007282355.1| - 0.007 16.7 0.4 0.01 16.2 0.4 1.3 1 1 0 1 1 1 1 Restriction alleviation protein Lar ADD_ATRX PF17981.1 gi|433592859|ref|YP_007282355.1| - 0.012 15.4 0.9 0.049 13.5 0.0 2.0 1 1 1 2 2 2 0 Cysteine Rich ADD domain PhnA_Zn_Ribbon PF08274.12 gi|433592859|ref|YP_007282355.1| - 0.015 15.3 1.3 0.061 13.3 1.4 1.8 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|433592859|ref|YP_007282355.1| - 0.019 14.4 0.2 0.91 9.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|433592859|ref|YP_007282355.1| - 0.026 14.5 0.8 0.28 11.2 0.8 1.9 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|433592859|ref|YP_007282355.1| - 0.034 14.2 0.4 0.036 14.1 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HYPF PF07503.12 gi|433592859|ref|YP_007282355.1| - 0.04 13.7 0.0 6.8 6.6 0.0 2.1 2 0 0 2 2 2 0 HypF finger TF_Zn_Ribbon PF08271.12 gi|433592859|ref|YP_007282355.1| - 0.057 13.0 3.3 0.076 12.5 3.3 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|433592859|ref|YP_007282355.1| - 0.064 13.4 2.4 0.22 11.7 2.3 1.8 1 1 1 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|433592859|ref|YP_007282355.1| - 0.069 13.0 1.5 0.38 10.7 1.5 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf_UBZ PF18439.1 gi|433592859|ref|YP_007282355.1| - 0.071 12.7 0.9 4.6 6.9 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|433592859|ref|YP_007282355.1| - 0.083 12.9 2.2 7.3 6.7 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein Desulfoferrod_N PF06397.12 gi|433592859|ref|YP_007282355.1| - 0.1 12.2 2.3 0.89 9.2 0.2 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF1451 PF07295.11 gi|433592859|ref|YP_007282355.1| - 0.12 12.5 0.9 0.15 12.1 0.9 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain Elf1 PF05129.13 gi|433592859|ref|YP_007282355.1| - 0.13 12.3 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C3HC PF07967.13 gi|433592859|ref|YP_007282355.1| - 0.19 11.8 1.1 1.6 8.7 0.1 2.0 1 1 1 2 2 2 0 C3HC zinc finger-like Prok-RING_1 PF14446.6 gi|433592859|ref|YP_007282355.1| - 0.64 10.0 4.9 1.2 9.2 4.9 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Eapp_C PF10238.9 gi|433592859|ref|YP_007282355.1| - 1.3 9.1 4.1 6.6 6.8 0.4 2.0 1 1 1 2 2 2 0 E2F-associated phosphoprotein Lyase_1 PF00206.20 gi|433592860|ref|YP_007282356.1| - 4.1e-56 190.7 0.3 9.9e-56 189.4 0.0 1.7 2 1 0 2 2 2 1 Lyase ASL_C2 PF14698.6 gi|433592860|ref|YP_007282356.1| - 4e-15 56.3 4.5 4.9e-15 56.0 2.0 2.6 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Arginosuc_synth PF00764.19 gi|433592861|ref|YP_007282357.1| - 5.5e-143 476.9 0.0 6.4e-143 476.7 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|433592861|ref|YP_007282357.1| - 7.1e-05 22.4 0.0 0.00013 21.6 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|433592861|ref|YP_007282357.1| - 0.00016 21.5 0.7 0.0041 16.8 0.0 2.2 2 0 0 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|433592861|ref|YP_007282357.1| - 0.0038 16.1 0.0 0.0066 15.3 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|433592861|ref|YP_007282357.1| - 0.017 14.2 0.0 0.027 13.6 0.0 1.2 1 0 0 1 1 1 0 NAD synthase DUF4897 PF16238.5 gi|433592862|ref|YP_007282358.1| - 0.022 14.6 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) DUF2207 PF09972.9 gi|433592863|ref|YP_007282359.1| - 2.4 6.8 4.0 2.4 6.8 4.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4191 PF13829.6 gi|433592863|ref|YP_007282359.1| - 5.1 6.4 6.4 5.3 6.3 6.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) 2_5_RNA_ligase2 PF13563.6 gi|433592864|ref|YP_007282360.1| - 1.8e-14 53.9 0.1 2.2e-14 53.7 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|433592864|ref|YP_007282360.1| - 3.5e-08 33.5 0.2 0.00037 20.6 0.0 2.5 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|433592864|ref|YP_007282360.1| - 0.00054 19.9 0.0 0.00068 19.6 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Sulf_transp PF04143.14 gi|433592865|ref|YP_007282361.1| - 1.1e-57 196.0 31.0 1.1e-57 196.0 31.0 2.3 2 1 0 2 2 2 1 Sulphur transport FixQ PF05545.11 gi|433592865|ref|YP_007282361.1| - 5.4 7.1 11.9 6.8 6.7 1.3 3.5 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ TusA PF01206.17 gi|433592866|ref|YP_007282362.1| - 1.9e-11 43.6 0.0 2.7e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA Rhodanese PF00581.20 gi|433592867|ref|YP_007282363.1| - 2.4e-15 56.9 0.1 2.9e-15 56.7 0.1 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Helicase_C_2 PF13307.6 gi|433592868|ref|YP_007282364.1| - 2.6e-28 99.3 0.0 7.3e-28 97.9 0.0 1.8 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|433592868|ref|YP_007282364.1| - 1.5e-20 73.5 0.2 5.2e-20 71.8 0.2 1.8 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|433592868|ref|YP_007282364.1| - 2.5e-07 30.6 0.0 0.00016 21.5 0.0 3.1 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|433592868|ref|YP_007282364.1| - 4.8e-07 29.9 0.1 4e-05 23.7 0.1 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit ATPase PF06745.13 gi|433592868|ref|YP_007282364.1| - 0.0016 17.8 0.0 0.0029 17.0 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|433592868|ref|YP_007282364.1| - 0.0079 15.8 1.6 2.2 7.8 0.0 3.8 4 0 0 4 4 4 1 AAA domain AAA_34 PF13872.6 gi|433592868|ref|YP_007282364.1| - 0.015 14.2 0.0 0.024 13.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 HBB PF06777.11 gi|433592868|ref|YP_007282364.1| - 0.025 14.3 0.0 0.063 13.0 0.0 1.7 1 0 0 1 1 1 0 Helical and beta-bridge domain PhoH PF02562.16 gi|433592868|ref|YP_007282364.1| - 0.03 13.8 0.0 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein Terminase_6 PF03237.15 gi|433592868|ref|YP_007282364.1| - 0.043 13.5 0.1 8.4 6.0 0.1 3.1 3 0 0 3 3 3 0 Terminase-like family Asparaginase_C PF17763.1 gi|433592868|ref|YP_007282364.1| - 0.14 12.4 0.1 0.34 11.2 0.1 1.6 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain TPR_MLP1_2 PF07926.12 gi|433592868|ref|YP_007282364.1| - 1.4 9.0 11.7 0.046 13.8 5.0 1.9 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Cation_efflux PF01545.21 gi|433592870|ref|YP_007282366.1| - 2.7e-27 95.8 5.1 1e-26 93.9 5.1 1.8 1 1 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|433592870|ref|YP_007282366.1| - 8.6e-06 25.8 0.1 1.4e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Phage_holin_3_6 PF07332.11 gi|433592870|ref|YP_007282366.1| - 1.7 8.7 10.4 0.1 12.6 0.6 2.9 2 1 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Metallophos_2 PF12850.7 gi|433592871|ref|YP_007282367.1| - 8.9e-27 94.3 0.7 1e-26 94.1 0.7 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|433592871|ref|YP_007282367.1| - 4e-06 27.5 0.1 0.028 14.9 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Usp PF00582.26 gi|433592871|ref|YP_007282367.1| - 0.04 14.4 0.1 0.06 13.9 0.1 1.2 1 0 0 1 1 1 0 Universal stress protein family DUF4083 PF13314.6 gi|433592872|ref|YP_007282368.1| - 0.12 12.3 3.5 0.15 12.0 3.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) Beta_elim_lyase PF01212.21 gi|433592873|ref|YP_007282369.1| - 1.2e-87 293.9 0.7 1.4e-87 293.7 0.7 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|433592873|ref|YP_007282369.1| - 0.0007 19.0 0.4 0.0015 18.0 0.1 1.7 3 0 0 3 3 3 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|433592873|ref|YP_007282369.1| - 0.0089 14.6 0.0 0.011 14.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Peptidase_M29 PF02073.15 gi|433592874|ref|YP_007282370.1| - 1.3e-69 235.0 0.1 1.6e-69 234.7 0.1 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Usp PF00582.26 gi|433592875|ref|YP_007282371.1| - 2e-27 96.4 0.8 2.3e-27 96.2 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family Abhydrolase_2 PF02230.16 gi|433592876|ref|YP_007282372.1| - 2.2e-20 73.4 0.0 1.2e-19 71.0 0.0 1.8 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 gi|433592876|ref|YP_007282372.1| - 2.4e-08 33.8 0.0 3e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|433592876|ref|YP_007282372.1| - 5.6e-08 32.3 0.8 0.069 12.4 0.0 3.0 2 1 1 3 3 3 3 Serine aminopeptidase, S33 Abhydrolase_3 PF07859.13 gi|433592876|ref|YP_007282372.1| - 4.8e-05 23.3 0.6 0.034 14.0 0.1 2.5 1 1 1 3 3 3 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|433592876|ref|YP_007282372.1| - 0.00021 20.9 0.2 0.68 9.4 0.0 2.5 3 0 0 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|433592876|ref|YP_007282372.1| - 0.00023 20.9 0.0 0.0003 20.5 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433592876|ref|YP_007282372.1| - 0.0068 17.0 2.6 0.15 12.6 0.6 2.2 1 1 1 2 2 2 1 Alpha/beta hydrolase family Palm_thioest PF02089.15 gi|433592876|ref|YP_007282372.1| - 0.053 13.4 0.0 0.058 13.2 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase FSH1 PF03959.13 gi|433592876|ref|YP_007282372.1| - 0.069 12.8 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) PE-PPE PF08237.11 gi|433592876|ref|YP_007282372.1| - 0.17 11.4 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 PE-PPE domain Glyoxalase PF00903.25 gi|433592877|ref|YP_007282373.1| - 2e-10 40.9 0.1 3.2e-10 40.3 0.1 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|433592877|ref|YP_007282373.1| - 6.2e-06 26.4 0.0 1.1e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF3880 PF12996.7 gi|433592877|ref|YP_007282373.1| - 0.1 12.7 0.1 0.24 11.5 0.0 1.7 2 0 0 2 2 2 0 DUF based on E. rectale Gene description (DUF3880) Pyr_redox_2 PF07992.14 gi|433592878|ref|YP_007282374.1| - 2.7e-18 66.2 6.1 8.7e-10 38.3 2.7 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|433592878|ref|YP_007282374.1| - 3.6e-12 46.1 0.1 1.4e-06 27.8 0.0 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|433592878|ref|YP_007282374.1| - 1.4e-09 37.2 0.1 4.4e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|433592878|ref|YP_007282374.1| - 1.7e-09 37.7 1.7 0.0011 18.7 0.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|433592878|ref|YP_007282374.1| - 8.4e-08 31.8 1.3 5.4e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_9 PF13454.6 gi|433592878|ref|YP_007282374.1| - 1.3e-06 28.5 0.4 0.0013 18.7 0.1 2.2 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|433592878|ref|YP_007282374.1| - 2.4e-06 26.9 2.4 6.2e-06 25.5 0.2 2.0 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|433592878|ref|YP_007282374.1| - 5.7e-06 25.7 0.4 5.7e-06 25.7 0.4 2.6 1 1 1 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|433592878|ref|YP_007282374.1| - 2.3e-05 24.5 0.1 6.2e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|433592878|ref|YP_007282374.1| - 9e-05 21.8 0.0 0.00019 20.8 0.0 1.6 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|433592878|ref|YP_007282374.1| - 0.00013 21.4 0.1 0.00023 20.7 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|433592878|ref|YP_007282374.1| - 0.00077 18.8 0.1 0.0014 17.9 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|433592878|ref|YP_007282374.1| - 0.0047 17.4 0.1 0.031 14.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|433592878|ref|YP_007282374.1| - 0.0098 15.0 0.7 0.092 11.8 0.1 2.0 1 1 1 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|433592878|ref|YP_007282374.1| - 0.0099 14.8 4.2 0.35 9.7 0.6 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Amino_oxidase PF01593.24 gi|433592878|ref|YP_007282374.1| - 0.036 13.4 0.1 0.073 12.3 0.0 1.5 1 1 1 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|433592878|ref|YP_007282374.1| - 0.093 13.2 0.0 0.18 12.2 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding GCS2 PF04107.13 gi|433592879|ref|YP_007282375.1| - 2.2e-07 30.5 2.1 2.6e-06 27.0 2.1 2.1 1 1 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Yip1 PF04893.17 gi|433592880|ref|YP_007282376.1| - 2.7e-13 50.0 22.4 3.3e-13 49.7 22.4 1.1 1 0 0 1 1 1 1 Yip1 domain DUF4006 PF13179.6 gi|433592880|ref|YP_007282376.1| - 1.3 9.0 2.9 3 7.8 2.9 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF4006) SDA1 PF05285.12 gi|433592881|ref|YP_007282377.1| - 6.9 6.0 12.7 7.8 5.8 12.7 1.0 1 0 0 1 1 1 0 SDA1 AAA_17 PF13207.6 gi|433592882|ref|YP_007282378.1| - 4.5e-17 62.7 0.1 6.5e-17 62.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|433592882|ref|YP_007282378.1| - 4.5e-11 43.4 0.0 6.1e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|433592882|ref|YP_007282378.1| - 4.5e-05 23.6 0.0 6.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|433592882|ref|YP_007282378.1| - 5.6e-05 23.3 0.1 0.00011 22.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain RNA_binding PF01877.17 gi|433592883|ref|YP_007282379.1| - 1.4e-10 41.4 0.3 9.6e-10 38.8 0.3 1.9 1 1 0 1 1 1 1 RNA binding Glyco_hydro2_C5 PF18565.1 gi|433592883|ref|YP_007282379.1| - 0.023 14.6 0.3 0.63 9.9 0.3 2.1 1 1 0 1 1 1 0 Glycoside hydrolase family 2 C-terminal domain 5 Cadherin_5 PF17892.1 gi|433592883|ref|YP_007282379.1| - 0.027 14.5 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 Cadherin-like domain DinB_2 PF12867.7 gi|433592884|ref|YP_007282380.1| - 0.11 13.0 1.0 0.3 11.6 0.1 2.2 2 2 0 2 2 2 0 DinB superfamily DSX_dimer PF08828.10 gi|433592884|ref|YP_007282380.1| - 1.4 8.6 3.3 22 4.8 0.1 2.9 3 1 0 3 3 3 0 Doublesex dimerisation domain HemY_N PF07219.13 gi|433592884|ref|YP_007282380.1| - 3.4 7.9 8.8 37 4.6 3.4 3.2 2 1 0 3 3 3 0 HemY protein N-terminus SRP54 PF00448.22 gi|433592885|ref|YP_007282381.1| - 1.4e-64 217.4 0.1 2.4e-64 216.6 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|433592885|ref|YP_007282381.1| - 8.5e-29 100.1 5.5 8.5e-29 100.1 5.5 3.3 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.19 gi|433592885|ref|YP_007282381.1| - 2e-17 63.2 0.2 2e-17 63.2 0.2 2.4 3 0 0 3 3 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|433592885|ref|YP_007282381.1| - 0.00045 20.3 0.0 0.0018 18.3 0.0 2.2 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|433592885|ref|YP_007282381.1| - 0.001 18.7 0.3 0.0062 16.2 0.3 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|433592885|ref|YP_007282381.1| - 0.003 17.8 0.1 0.042 14.1 0.0 2.6 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.12 gi|433592885|ref|YP_007282381.1| - 0.0034 16.7 0.0 0.017 14.4 0.0 2.2 3 0 0 3 3 3 1 Zeta toxin CARD PF00619.21 gi|433592885|ref|YP_007282381.1| - 0.0058 16.6 0.6 0.095 12.7 0.1 2.4 2 0 0 2 2 2 1 Caspase recruitment domain AAA_24 PF13479.6 gi|433592885|ref|YP_007282381.1| - 0.011 15.4 0.0 0.041 13.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|433592885|ref|YP_007282381.1| - 0.017 14.6 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain APS_kinase PF01583.20 gi|433592885|ref|YP_007282381.1| - 0.036 14.0 0.0 0.084 12.8 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF4618 PF15397.6 gi|433592885|ref|YP_007282381.1| - 0.042 13.3 0.7 0.042 13.3 0.7 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4618) KdpC PF02669.15 gi|433592885|ref|YP_007282381.1| - 0.055 13.3 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 K+-transporting ATPase, c chain DUF1884 PF08967.10 gi|433592885|ref|YP_007282381.1| - 0.063 13.5 1.3 0.21 11.9 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1884) ArsA_ATPase PF02374.15 gi|433592885|ref|YP_007282381.1| - 0.074 12.2 0.0 0.074 12.2 0.0 3.0 3 0 0 3 3 3 0 Anion-transporting ATPase AAA_33 PF13671.6 gi|433592885|ref|YP_007282381.1| - 0.089 13.0 0.0 0.27 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF2202 PF09968.9 gi|433592885|ref|YP_007282381.1| - 0.089 12.6 0.2 0.26 11.1 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein domain (DUF2202) AAA_16 PF13191.6 gi|433592885|ref|YP_007282381.1| - 0.093 13.1 0.2 0.29 11.5 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain T3SS_needle_F PF09392.10 gi|433592885|ref|YP_007282381.1| - 0.11 12.7 1.1 0.69 10.1 1.1 2.4 1 0 0 1 1 1 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AAA_25 PF13481.6 gi|433592885|ref|YP_007282381.1| - 0.16 11.5 2.7 0.31 10.6 1.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|433592885|ref|YP_007282381.1| - 0.19 12.2 1.0 1 9.8 1.0 2.2 1 1 0 1 1 1 0 AAA domain Hpt PF01627.23 gi|433592885|ref|YP_007282381.1| - 6.9 7.0 7.5 1.6 9.1 0.4 3.3 4 0 0 4 4 3 0 Hpt domain VCX_VCY PF15231.6 gi|433592886|ref|YP_007282382.1| - 0.06 14.0 0.1 0.086 13.5 0.1 1.2 1 0 0 1 1 1 0 Variable charge X/Y family HTH_20 PF12840.7 gi|433592887|ref|YP_007282383.1| - 1.6e-05 24.8 0.6 0.0001 22.3 0.0 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|433592887|ref|YP_007282383.1| - 0.021 14.4 0.1 0.095 12.3 0.0 2.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|433592887|ref|YP_007282383.1| - 0.025 14.3 0.0 0.065 13.0 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain MAP7 PF05672.11 gi|433592887|ref|YP_007282383.1| - 0.056 13.1 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 MAP7 (E-MAP-115) family TrmB PF01978.19 gi|433592887|ref|YP_007282383.1| - 0.088 12.7 0.0 0.6 10.0 0.0 2.2 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|433592887|ref|YP_007282383.1| - 0.12 12.8 0.0 0.35 11.3 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator DUF2802 PF10975.8 gi|433592887|ref|YP_007282383.1| - 0.17 12.0 1.2 1.8 8.7 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2802) Pyr_redox_2 PF07992.14 gi|433592889|ref|YP_007282385.1| - 2e-46 158.6 4.8 2.7e-46 158.1 4.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|433592889|ref|YP_007282385.1| - 1.3e-24 86.6 0.1 2.4e-24 85.7 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|433592889|ref|YP_007282385.1| - 1.7e-14 54.1 0.9 2.2e-12 47.4 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|433592889|ref|YP_007282385.1| - 1.7e-08 34.1 0.7 9.3e-08 31.7 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|433592889|ref|YP_007282385.1| - 9.2e-05 21.7 0.1 0.00099 18.3 0.0 2.4 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|433592889|ref|YP_007282385.1| - 0.0073 15.4 4.0 0.012 14.7 1.6 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|433592889|ref|YP_007282385.1| - 0.05 12.9 3.3 0.087 12.1 3.3 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|433592889|ref|YP_007282385.1| - 0.12 12.3 2.0 1.7 8.5 0.0 2.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|433592889|ref|YP_007282385.1| - 0.53 9.3 9.6 2.9 6.9 3.2 3.1 3 1 1 4 4 4 0 FAD binding domain HTH_10 PF04967.12 gi|433592890|ref|YP_007282386.1| - 4.7e-14 51.9 0.2 4.7e-14 51.9 0.2 1.5 2 0 0 2 2 2 1 HTH DNA binding domain BAT PF15915.5 gi|433592890|ref|YP_007282386.1| - 1.4e-08 34.7 0.2 2.1e-08 34.2 0.2 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4_2 PF08281.12 gi|433592890|ref|YP_007282386.1| - 5.4e-05 22.8 0.7 0.01 15.5 0.2 3.3 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|433592890|ref|YP_007282386.1| - 0.00021 20.7 1.3 0.00025 20.5 0.2 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|433592890|ref|YP_007282386.1| - 0.033 14.1 0.1 0.077 12.9 0.1 1.6 1 0 0 1 1 1 0 MarR family Phage_CI_repr PF07022.13 gi|433592890|ref|YP_007282386.1| - 0.12 12.5 0.3 0.3 11.2 0.0 1.8 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_24 PF13412.6 gi|433592890|ref|YP_007282386.1| - 0.12 11.9 0.6 0.27 10.8 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DDE_Tnp_1 PF01609.21 gi|433592891|ref|YP_007282387.1| - 4.8e-21 75.4 0.0 7.1e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain HalOD1 PF18545.1 gi|433592892|ref|YP_007282388.1| - 1.4e-19 70.1 2.5 1.9e-18 66.5 2.5 2.0 1 1 0 1 1 1 1 Halobacterial output domain 1 Rhodanese PF00581.20 gi|433592893|ref|YP_007282389.1| - 8.2e-40 135.7 0.0 7.5e-21 74.7 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|433592894|ref|YP_007282390.1| - 1.1e-35 122.3 0.6 6.6e-18 65.2 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain DUF4328 PF14219.6 gi|433592895|ref|YP_007282391.1| - 0.029 13.9 1.0 0.029 13.9 1.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4328) Rubrerythrin PF02915.17 gi|433592896|ref|YP_007282392.1| - 0.0013 19.2 0.3 0.0052 17.2 0.2 1.9 2 0 0 2 2 2 1 Rubrerythrin LprI PF07007.12 gi|433592897|ref|YP_007282393.1| - 1.1 9.9 5.9 2.3 8.9 5.1 1.7 1 1 1 2 2 2 0 Lysozyme inhibitor LprI DUF4407 PF14362.6 gi|433592897|ref|YP_007282393.1| - 1.2 8.4 5.9 1.3 8.3 5.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HK PF02110.15 gi|433592898|ref|YP_007282394.1| - 3.1e-68 229.8 2.3 3.6e-68 229.6 2.3 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|433592898|ref|YP_007282394.1| - 0.00011 21.7 0.3 0.00017 21.1 0.3 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|433592898|ref|YP_007282394.1| - 0.00049 19.7 3.3 0.00095 18.7 3.3 1.4 1 1 0 1 1 1 1 Carbohydrate kinase TMP-TENI PF02581.17 gi|433592899|ref|YP_007282395.1| - 2.2e-61 206.3 2.5 2.6e-61 206.1 2.5 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|433592899|ref|YP_007282395.1| - 6.4e-06 25.8 7.9 8.2e-06 25.4 7.9 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|433592899|ref|YP_007282395.1| - 0.00034 20.0 4.8 0.00066 19.1 4.8 1.5 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|433592899|ref|YP_007282395.1| - 0.028 13.7 1.7 0.036 13.3 1.7 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DUF561 PF04481.12 gi|433592899|ref|YP_007282395.1| - 0.13 11.4 0.9 0.27 10.4 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Acetyltransf_4 PF13420.7 gi|433592900|ref|YP_007282396.1| - 4.3e-30 104.9 0.0 5.2e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|433592900|ref|YP_007282396.1| - 6.9e-13 48.9 0.0 1.1e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|433592900|ref|YP_007282396.1| - 1.1e-08 35.3 0.0 1.6e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|433592900|ref|YP_007282396.1| - 3.3e-07 30.3 0.0 4.6e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|433592900|ref|YP_007282396.1| - 4e-07 30.8 0.0 6.7e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|433592900|ref|YP_007282396.1| - 0.0067 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Mem_trans PF03547.18 gi|433592901|ref|YP_007282397.1| - 2e-20 72.6 18.3 8.5e-11 40.9 1.4 2.1 2 0 0 2 2 2 2 Membrane transport protein DUF1358 PF07096.11 gi|433592901|ref|YP_007282397.1| - 0.084 12.9 0.6 0.2 11.6 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1358) FrhB_FdhB_C PF04432.13 gi|433592902|ref|YP_007282398.1| - 1e-30 106.6 0.1 2.2e-30 105.5 0.1 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|433592902|ref|YP_007282398.1| - 2.8e-19 69.0 0.1 6.1e-19 68.0 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_16 PF13484.6 gi|433592902|ref|YP_007282398.1| - 3.4e-09 37.5 2.3 0.0063 17.4 0.1 3.9 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|433592902|ref|YP_007282398.1| - 7.9e-09 35.5 6.1 7.9e-09 35.5 6.1 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|433592902|ref|YP_007282398.1| - 2e-08 33.7 19.3 6e-07 29.0 4.2 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|433592902|ref|YP_007282398.1| - 4e-07 30.0 10.0 4e-07 30.0 10.0 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433592902|ref|YP_007282398.1| - 5e-07 29.8 12.3 9.9e-07 28.8 9.2 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|433592902|ref|YP_007282398.1| - 5.4e-07 30.1 9.4 0.00017 22.1 0.1 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|433592902|ref|YP_007282398.1| - 8.3e-06 25.7 3.7 8.3e-06 25.7 3.7 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|433592902|ref|YP_007282398.1| - 5.1e-05 23.1 3.3 5.1e-05 23.1 3.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|433592902|ref|YP_007282398.1| - 8.5e-05 23.0 8.4 0.014 15.9 0.2 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|433592902|ref|YP_007282398.1| - 0.00099 19.4 21.2 0.0016 18.8 4.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|433592902|ref|YP_007282398.1| - 0.0075 16.5 2.3 0.0075 16.5 2.3 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|433592902|ref|YP_007282398.1| - 0.051 14.5 4.7 0.051 14.5 4.7 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|433592902|ref|YP_007282398.1| - 0.078 13.5 20.7 0.11 13.0 4.3 4.3 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|433592902|ref|YP_007282398.1| - 0.23 11.9 16.9 2.3e+02 2.4 14.6 3.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain NIR_SIR PF01077.22 gi|433592903|ref|YP_007282399.1| - 3e-47 160.1 0.0 3.4e-37 127.4 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|433592903|ref|YP_007282399.1| - 7.4e-29 99.4 0.0 1.2e-13 50.7 0.0 2.8 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain zf-HC2 PF13490.6 gi|433592903|ref|YP_007282399.1| - 0.0099 16.1 1.0 2.6 8.4 0.6 3.0 2 0 0 2 2 2 1 Putative zinc-finger DGC PF08859.11 gi|433592903|ref|YP_007282399.1| - 0.022 14.9 0.1 0.61 10.2 0.0 2.5 2 0 0 2 2 2 0 DGC domain Toxin_TOLIP PF00087.21 gi|433592903|ref|YP_007282399.1| - 0.11 12.7 0.1 19 5.6 0.0 2.7 2 0 0 2 2 2 0 Snake toxin and toxin-like protein SRP54 PF00448.22 gi|433592905|ref|YP_007282401.1| - 6.2e-68 228.3 0.2 8.9e-68 227.8 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|433592905|ref|YP_007282401.1| - 8.5e-13 48.3 0.2 8.5e-13 48.3 0.2 2.7 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain APS_kinase PF01583.20 gi|433592905|ref|YP_007282401.1| - 0.00019 21.3 0.0 0.00034 20.5 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.6 gi|433592905|ref|YP_007282401.1| - 0.00084 19.8 0.0 0.00084 19.8 0.0 2.3 2 1 0 2 2 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|433592905|ref|YP_007282401.1| - 0.0015 18.8 0.8 0.0047 17.2 0.2 2.3 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|433592905|ref|YP_007282401.1| - 0.0018 18.7 0.3 0.0092 16.4 0.1 2.4 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|433592905|ref|YP_007282401.1| - 0.0025 17.9 0.0 0.0051 16.9 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|433592905|ref|YP_007282401.1| - 0.0026 17.1 0.0 0.0055 16.0 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.17 gi|433592905|ref|YP_007282401.1| - 0.0031 17.2 0.0 0.04 13.6 0.0 2.4 2 0 0 2 2 2 1 Thymidylate kinase AAA_30 PF13604.6 gi|433592905|ref|YP_007282401.1| - 0.004 16.9 1.5 0.0057 16.4 0.3 1.9 2 1 0 2 2 2 1 AAA domain TRAM_2 PF18693.1 gi|433592905|ref|YP_007282401.1| - 0.02 15.0 0.1 0.074 13.2 0.1 2.0 1 0 0 1 1 1 0 TRAM domain ATP_bind_1 PF03029.17 gi|433592905|ref|YP_007282401.1| - 0.022 14.5 0.4 0.096 12.5 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|433592905|ref|YP_007282401.1| - 0.03 14.2 0.1 0.055 13.4 0.1 1.4 1 0 0 1 1 1 0 NTPase 6PF2K PF01591.18 gi|433592905|ref|YP_007282401.1| - 0.04 13.2 0.0 0.071 12.4 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase KTI12 PF08433.10 gi|433592905|ref|YP_007282401.1| - 0.042 13.3 0.0 0.067 12.6 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|433592905|ref|YP_007282401.1| - 0.077 13.3 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain LytR_C PF13399.6 gi|433592905|ref|YP_007282401.1| - 0.11 13.5 0.3 0.11 13.5 0.3 3.1 3 0 0 3 3 3 0 LytR cell envelope-related transcriptional attenuator Prefoldin PF02996.17 gi|433592906|ref|YP_007282402.1| - 1.4e-26 92.8 7.8 1.4e-26 92.8 7.8 1.8 1 1 1 2 2 2 1 Prefoldin subunit SlyX PF04102.12 gi|433592906|ref|YP_007282402.1| - 2.7e-07 31.1 26.7 3.5e-05 24.3 10.6 3.1 3 0 0 3 3 3 1 SlyX ZapB PF06005.12 gi|433592906|ref|YP_007282402.1| - 4.3e-07 30.3 26.0 7.3e-05 23.1 8.9 2.3 2 0 0 2 2 2 2 Cell division protein ZapB Spc24 PF08286.11 gi|433592906|ref|YP_007282402.1| - 6.7e-06 26.3 13.1 0.011 16.0 0.6 2.2 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 Prefoldin_2 PF01920.20 gi|433592906|ref|YP_007282402.1| - 1.8e-05 24.6 24.2 0.02 14.8 6.0 2.7 1 1 1 2 2 2 2 Prefoldin subunit DUF3450 PF11932.8 gi|433592906|ref|YP_007282402.1| - 3.8e-05 23.1 20.2 0.0027 17.0 5.2 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3450) APG6_N PF17675.1 gi|433592906|ref|YP_007282402.1| - 5.3e-05 23.8 25.1 0.0025 18.3 8.1 2.1 2 0 0 2 2 2 2 Apg6 coiled-coil region Ax_dynein_light PF10211.9 gi|433592906|ref|YP_007282402.1| - 5.4e-05 23.2 12.7 0.021 14.8 5.2 2.1 2 0 0 2 2 2 2 Axonemal dynein light chain NPV_P10 PF05531.12 gi|433592906|ref|YP_007282402.1| - 5.5e-05 23.5 17.3 0.017 15.6 4.7 2.6 2 1 0 2 2 2 2 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|433592906|ref|YP_007282402.1| - 7.2e-05 21.8 18.1 0.01 14.8 4.9 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein MscS_porin PF12795.7 gi|433592906|ref|YP_007282402.1| - 8.7e-05 22.2 23.3 0.0007 19.2 7.7 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel porin domain DUF4618 PF15397.6 gi|433592906|ref|YP_007282402.1| - 8.7e-05 22.1 11.8 0.014 14.8 1.4 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4618) YabA PF06156.13 gi|433592906|ref|YP_007282402.1| - 0.00012 22.7 12.7 0.024 15.3 4.2 2.2 2 0 0 2 2 2 2 Initiation control protein YabA DHR10 PF18595.1 gi|433592906|ref|YP_007282402.1| - 0.00021 21.3 22.1 0.0056 16.7 6.5 2.3 2 0 0 2 2 2 2 Designed helical repeat protein 10 domain TSC22 PF01166.18 gi|433592906|ref|YP_007282402.1| - 0.00032 21.0 1.9 0.00032 21.0 1.9 3.2 3 1 0 3 3 2 1 TSC-22/dip/bun family DUF5082 PF16888.5 gi|433592906|ref|YP_007282402.1| - 0.00036 20.8 19.6 0.024 14.9 4.5 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF5082) HOOK PF05622.12 gi|433592906|ref|YP_007282402.1| - 0.00037 18.8 20.1 0.021 13.0 20.1 2.0 1 1 0 1 1 1 1 HOOK protein DUF4407 PF14362.6 gi|433592906|ref|YP_007282402.1| - 0.00038 19.9 15.2 0.038 13.3 6.7 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4407) FlxA PF14282.6 gi|433592906|ref|YP_007282402.1| - 0.00045 20.2 30.1 0.00099 19.1 10.0 2.4 2 0 0 2 2 2 1 FlxA-like protein GAS PF13851.6 gi|433592906|ref|YP_007282402.1| - 0.00058 19.3 14.2 0.05 13.0 3.5 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.9 gi|433592906|ref|YP_007282402.1| - 0.00058 19.9 17.1 0.014 15.4 4.2 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Sec34 PF04136.15 gi|433592906|ref|YP_007282402.1| - 0.00061 19.7 14.8 0.0085 16.0 3.5 2.2 2 0 0 2 2 2 1 Sec34-like family Lzipper-MIP1 PF14389.6 gi|433592906|ref|YP_007282402.1| - 0.00068 19.9 2.9 0.00068 19.9 2.9 2.6 2 1 0 2 2 1 1 Leucine-zipper of ternary complex factor MIP1 DUF16 PF01519.16 gi|433592906|ref|YP_007282402.1| - 0.00084 19.8 17.9 0.057 13.9 4.0 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF16 DUF4988 PF16378.5 gi|433592906|ref|YP_007282402.1| - 0.001 18.8 9.9 0.15 11.7 1.3 2.5 2 1 0 2 2 2 2 Domain of unknown function CENP-H PF05837.12 gi|433592906|ref|YP_007282402.1| - 0.0011 19.4 10.1 0.13 12.6 4.1 2.2 2 0 0 2 2 2 2 Centromere protein H (CENP-H) GPS2_interact PF15784.5 gi|433592906|ref|YP_007282402.1| - 0.0016 18.9 2.3 0.0016 18.9 2.3 2.2 2 0 0 2 2 2 1 G-protein pathway suppressor 2-interacting domain Not3 PF04065.15 gi|433592906|ref|YP_007282402.1| - 0.0016 17.9 10.7 0.0078 15.7 2.0 2.1 2 0 0 2 2 2 1 Not1 N-terminal domain, CCR4-Not complex component DUF4337 PF14235.6 gi|433592906|ref|YP_007282402.1| - 0.0017 18.5 2.9 0.0017 18.5 2.9 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4337) SKA2 PF16740.5 gi|433592906|ref|YP_007282402.1| - 0.0017 18.1 10.3 0.15 11.8 2.4 2.3 2 0 0 2 2 2 2 Spindle and kinetochore-associated protein 2 AAA_13 PF13166.6 gi|433592906|ref|YP_007282402.1| - 0.0018 17.1 15.4 0.013 14.2 3.2 2.0 2 0 0 2 2 2 2 AAA domain BLOC1_2 PF10046.9 gi|433592906|ref|YP_007282402.1| - 0.0018 18.5 20.4 0.045 14.1 3.7 2.8 2 1 0 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tropomyosin_1 PF12718.7 gi|433592906|ref|YP_007282402.1| - 0.002 18.3 19.9 0.028 14.6 7.0 2.1 2 0 0 2 2 2 1 Tropomyosin like Laminin_II PF06009.12 gi|433592906|ref|YP_007282402.1| - 0.0021 18.1 8.8 0.1 12.6 1.2 2.2 2 0 0 2 2 2 2 Laminin Domain II Lebercilin PF15619.6 gi|433592906|ref|YP_007282402.1| - 0.0024 17.5 12.1 0.029 14.0 0.9 2.2 2 0 0 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease DUF4201 PF13870.6 gi|433592906|ref|YP_007282402.1| - 0.0026 17.5 11.7 0.18 11.5 0.7 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4201) Phage_GP20 PF06810.11 gi|433592906|ref|YP_007282402.1| - 0.0027 17.5 18.6 0.01 15.6 7.2 2.2 2 0 0 2 2 2 1 Phage minor structural protein GP20 DivIC PF04977.15 gi|433592906|ref|YP_007282402.1| - 0.0029 17.3 25.2 0.094 12.5 7.5 2.6 2 1 0 2 2 2 2 Septum formation initiator DUF724 PF05266.14 gi|433592906|ref|YP_007282402.1| - 0.0031 17.4 11.8 0.044 13.6 2.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF724) DUF4795 PF16043.5 gi|433592906|ref|YP_007282402.1| - 0.0043 16.7 11.9 0.038 13.6 2.3 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4795) Tektin PF03148.14 gi|433592906|ref|YP_007282402.1| - 0.0045 15.8 15.3 0.0098 14.7 2.7 2.1 2 0 0 2 2 2 1 Tektin family Dor1 PF04124.12 gi|433592906|ref|YP_007282402.1| - 0.0049 15.6 7.4 0.084 11.5 1.0 2.0 2 0 0 2 2 2 1 Dor1-like family KASH_CCD PF14662.6 gi|433592906|ref|YP_007282402.1| - 0.005 16.7 19.7 0.034 14.0 8.6 2.4 3 0 0 3 3 2 1 Coiled-coil region of CCDC155 or KASH DUF812 PF05667.11 gi|433592906|ref|YP_007282402.1| - 0.0053 15.7 18.8 0.036 13.0 5.4 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF812) JIP_LZII PF16471.5 gi|433592906|ref|YP_007282402.1| - 0.0057 16.8 4.6 0.0057 16.8 4.6 2.6 2 1 0 2 2 2 1 JNK-interacting protein leucine zipper II FliD_C PF07195.12 gi|433592906|ref|YP_007282402.1| - 0.0069 15.8 1.9 0.0069 15.8 1.9 2.1 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus ATG16 PF08614.11 gi|433592906|ref|YP_007282402.1| - 0.0072 16.6 15.7 0.22 11.7 3.7 2.1 2 0 0 2 2 2 2 Autophagy protein 16 (ATG16) BicD PF09730.9 gi|433592906|ref|YP_007282402.1| - 0.0072 14.8 10.5 0.01 14.3 10.5 1.2 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D UPF0242 PF06785.11 gi|433592906|ref|YP_007282402.1| - 0.0084 16.2 5.8 0.0084 16.2 5.8 2.1 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus PspA_IM30 PF04012.12 gi|433592906|ref|YP_007282402.1| - 0.0088 15.6 18.7 0.028 14.0 5.9 2.1 2 0 0 2 2 2 1 PspA/IM30 family TMF_TATA_bd PF12325.8 gi|433592906|ref|YP_007282402.1| - 0.0095 16.1 17.2 0.11 12.7 4.1 2.2 2 0 0 2 2 2 1 TATA element modulatory factor 1 TATA binding LRRFIP PF09738.9 gi|433592906|ref|YP_007282402.1| - 0.01 15.3 14.1 0.17 11.4 4.4 2.1 2 0 0 2 2 2 0 LRRFIP family Golgin_A5 PF09787.9 gi|433592906|ref|YP_007282402.1| - 0.01 15.3 6.4 0.01 15.3 6.4 2.1 2 0 0 2 2 2 0 Golgin subfamily A member 5 LPP PF04728.13 gi|433592906|ref|YP_007282402.1| - 0.011 16.1 18.1 0.5 10.8 3.4 2.8 2 1 0 2 2 2 0 Lipoprotein leucine-zipper FlaC_arch PF05377.11 gi|433592906|ref|YP_007282402.1| - 0.011 16.1 18.0 0.38 11.2 3.9 3.7 3 1 0 3 3 2 0 Flagella accessory protein C (FlaC) Baculo_PEP_C PF04513.12 gi|433592906|ref|YP_007282402.1| - 0.011 15.8 15.8 0.1 12.7 2.9 2.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin_2 PF14523.6 gi|433592906|ref|YP_007282402.1| - 0.011 16.1 9.9 0.056 13.8 1.0 2.3 2 0 0 2 2 2 0 Syntaxin-like protein ADIP PF11559.8 gi|433592906|ref|YP_007282402.1| - 0.012 15.7 14.5 0.013 15.5 3.2 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding IFT57 PF10498.9 gi|433592906|ref|YP_007282402.1| - 0.016 14.2 15.0 0.059 12.3 3.6 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 kleA_kleC PF17383.2 gi|433592906|ref|YP_007282402.1| - 0.016 15.5 6.5 0.024 14.9 1.1 2.4 2 0 0 2 2 2 0 Uncharacterized KorC regulated protein A Cob_adeno_trans PF01923.18 gi|433592906|ref|YP_007282402.1| - 0.016 15.3 1.9 0.016 15.3 1.9 2.3 1 1 1 2 2 2 0 Cobalamin adenosyltransferase HalX PF08663.10 gi|433592906|ref|YP_007282402.1| - 0.017 15.4 20.5 0.045 14.1 4.1 2.8 2 1 1 3 3 2 0 HalX domain V_ATPase_I PF01496.19 gi|433592906|ref|YP_007282402.1| - 0.017 13.0 10.7 0.12 10.3 1.7 2.0 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family CENP-Q PF13094.6 gi|433592906|ref|YP_007282402.1| - 0.018 15.3 16.9 0.11 12.7 6.1 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Nmad5 PF18757.1 gi|433592906|ref|YP_007282402.1| - 0.018 15.2 2.5 0.027 14.7 2.5 1.3 1 0 0 1 1 1 0 Nucleotide modification associated domain 5 BRE1 PF08647.11 gi|433592906|ref|YP_007282402.1| - 0.018 15.1 15.8 0.23 11.5 2.6 2.3 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase DUF1664 PF07889.12 gi|433592906|ref|YP_007282402.1| - 0.019 15.0 15.1 0.23 11.5 2.3 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) DASH_Dam1 PF08653.10 gi|433592906|ref|YP_007282402.1| - 0.019 14.8 8.9 0.65 9.9 0.5 2.9 2 1 1 3 3 3 0 DASH complex subunit Dam1 TPR_MLP1_2 PF07926.12 gi|433592906|ref|YP_007282402.1| - 0.019 15.0 24.9 0.23 11.5 9.4 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Jnk-SapK_ap_N PF09744.9 gi|433592906|ref|YP_007282402.1| - 0.02 15.1 4.6 0.02 15.1 4.6 2.2 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 TACC_C PF05010.14 gi|433592906|ref|YP_007282402.1| - 0.022 14.5 12.8 0.45 10.3 3.1 2.1 2 0 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF4200 PF13863.6 gi|433592906|ref|YP_007282402.1| - 0.026 14.9 15.8 0.072 13.5 3.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Allexi_40kDa PF05549.11 gi|433592906|ref|YP_007282402.1| - 0.028 13.9 5.5 0.22 11.0 0.6 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein EzrA PF06160.12 gi|433592906|ref|YP_007282402.1| - 0.029 12.6 16.5 0.23 9.6 4.7 2.2 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA SHE3 PF17078.5 gi|433592906|ref|YP_007282402.1| - 0.029 14.1 12.8 0.071 12.8 3.2 2.1 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 CC2-LZ PF16516.5 gi|433592906|ref|YP_007282402.1| - 0.03 14.7 18.6 0.058 13.8 4.9 2.2 2 0 0 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator DUF2730 PF10805.8 gi|433592906|ref|YP_007282402.1| - 0.031 14.4 8.3 0.44 10.7 0.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DUF2937 PF11157.8 gi|433592906|ref|YP_007282402.1| - 0.031 14.0 10.4 0.029 14.1 1.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) Fib_alpha PF08702.10 gi|433592906|ref|YP_007282402.1| - 0.039 14.1 13.6 0.45 10.7 0.8 2.3 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family GCN5L1 PF06320.13 gi|433592906|ref|YP_007282402.1| - 0.039 14.1 3.4 0.039 14.1 3.4 2.2 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) DUF3287 PF11690.8 gi|433592906|ref|YP_007282402.1| - 0.04 13.6 0.9 2.3 8.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3287) Uds1 PF15456.6 gi|433592906|ref|YP_007282402.1| - 0.044 14.0 11.3 0.18 11.9 11.3 2.0 1 1 0 1 1 1 0 Up-regulated During Septation XhlA PF10779.9 gi|433592906|ref|YP_007282402.1| - 0.051 13.8 17.7 0.94 9.7 6.7 2.9 3 1 0 3 3 2 0 Haemolysin XhlA DUF2353 PF09789.9 gi|433592906|ref|YP_007282402.1| - 0.051 12.9 11.5 0.18 11.1 11.4 1.7 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Muted PF14942.6 gi|433592906|ref|YP_007282402.1| - 0.054 13.8 13.4 0.6 10.5 2.9 2.1 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein MctB PF11382.8 gi|433592906|ref|YP_007282402.1| - 0.055 13.2 13.2 0.083 12.6 2.7 2.2 2 0 0 2 2 2 0 Copper transport outer membrane protein, MctB TFR_dimer PF04253.15 gi|433592906|ref|YP_007282402.1| - 0.058 13.5 0.9 2.7 8.1 0.2 2.4 2 0 0 2 2 2 0 Transferrin receptor-like dimerisation domain End3 PF12761.7 gi|433592906|ref|YP_007282402.1| - 0.059 13.5 11.5 0.93 9.6 2.0 2.2 2 0 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 GrpE PF01025.19 gi|433592906|ref|YP_007282402.1| - 0.059 13.0 17.4 0.11 12.2 6.2 2.1 2 0 0 2 2 2 0 GrpE Spectrin PF00435.21 gi|433592906|ref|YP_007282402.1| - 0.06 13.8 17.3 0.64 10.5 4.7 2.2 2 0 0 2 2 2 0 Spectrin repeat MtrB PF05440.12 gi|433592906|ref|YP_007282402.1| - 0.062 13.7 1.9 2.2 8.7 0.3 2.4 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Cytochrom_C_2 PF01322.20 gi|433592906|ref|YP_007282402.1| - 0.062 14.2 7.2 0.075 13.9 1.7 2.1 1 1 1 2 2 2 0 Cytochrome C' FapA PF03961.13 gi|433592906|ref|YP_007282402.1| - 0.064 11.8 13.9 0.44 9.1 2.2 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF1465 PF07323.12 gi|433592906|ref|YP_007282402.1| - 0.065 13.1 6.3 0.17 11.7 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1465) Seryl_tRNA_N PF02403.22 gi|433592906|ref|YP_007282402.1| - 0.07 13.4 15.5 0.91 9.8 5.6 2.4 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain MAD PF05557.13 gi|433592906|ref|YP_007282402.1| - 0.074 11.4 18.1 0.03 12.7 5.7 2.0 2 0 0 2 2 2 0 Mitotic checkpoint protein Syntaxin-6_N PF09177.11 gi|433592906|ref|YP_007282402.1| - 0.075 13.6 13.2 0.51 10.9 1.4 2.7 2 1 1 3 3 2 0 Syntaxin 6, N-terminal SKA1 PF07160.12 gi|433592906|ref|YP_007282402.1| - 0.075 12.9 11.2 0.57 10.0 2.9 2.1 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 Paralemmin PF03285.15 gi|433592906|ref|YP_007282402.1| - 0.077 12.6 13.5 0.35 10.4 3.6 2.1 2 0 0 2 2 2 0 Paralemmin DUF1192 PF06698.11 gi|433592906|ref|YP_007282402.1| - 0.077 13.1 12.2 1.3 9.2 1.7 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) ORF6C PF10552.9 gi|433592906|ref|YP_007282402.1| - 0.078 13.1 10.8 1.4 9.0 0.8 2.3 2 0 0 2 2 2 0 ORF6C domain PRKG1_interact PF15898.5 gi|433592906|ref|YP_007282402.1| - 0.084 13.8 12.8 1.3 10.0 3.3 2.2 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain ERM PF00769.19 gi|433592906|ref|YP_007282402.1| - 0.084 12.7 22.2 0.046 13.5 7.8 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family OmpH PF03938.14 gi|433592906|ref|YP_007282402.1| - 0.087 13.2 24.9 0.11 12.9 9.1 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) HAUS-augmin3 PF14932.6 gi|433592906|ref|YP_007282402.1| - 0.11 12.0 15.5 0.077 12.6 3.9 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 HBM PF16591.5 gi|433592906|ref|YP_007282402.1| - 0.11 11.9 12.2 0.61 9.5 2.1 2.1 2 0 0 2 2 2 0 Helical bimodular sensor domain Rab5-bind PF09311.11 gi|433592906|ref|YP_007282402.1| - 0.12 11.8 18.1 0.023 14.1 6.3 2.0 2 0 0 2 2 2 0 Rabaptin-like protein ATP-synt_D PF01813.17 gi|433592906|ref|YP_007282402.1| - 0.12 12.2 6.6 0.71 9.7 1.7 2.2 2 0 0 2 2 2 0 ATP synthase subunit D FliJ PF02050.16 gi|433592906|ref|YP_007282402.1| - 0.13 12.5 24.7 0.11 12.7 6.1 2.4 2 1 0 2 2 2 0 Flagellar FliJ protein Occludin_ELL PF07303.13 gi|433592906|ref|YP_007282402.1| - 0.15 12.8 12.2 0.9 10.3 1.1 2.3 2 1 0 2 2 2 0 Occludin homology domain YkyA PF10368.9 gi|433592906|ref|YP_007282402.1| - 0.16 11.7 18.6 0.33 10.6 5.9 2.1 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein HrpB7 PF09486.10 gi|433592906|ref|YP_007282402.1| - 0.16 12.3 15.0 1.2 9.5 2.9 2.2 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF948 PF06103.11 gi|433592906|ref|YP_007282402.1| - 0.16 12.2 12.1 0.9 9.8 1.7 2.4 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) T3SSipB PF16535.5 gi|433592906|ref|YP_007282402.1| - 0.17 12.4 14.2 1 9.8 1.6 2.1 2 0 0 2 2 2 0 Type III cell invasion protein SipB TMPIT PF07851.13 gi|433592906|ref|YP_007282402.1| - 0.17 11.1 11.2 0.24 10.6 0.3 2.0 1 1 1 2 2 2 0 TMPIT-like protein DUF4446 PF14584.6 gi|433592906|ref|YP_007282402.1| - 0.19 11.7 10.9 1.2 9.1 2.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Vps51 PF08700.11 gi|433592906|ref|YP_007282402.1| - 0.19 11.8 9.9 1.1 9.4 1.9 3.0 2 1 1 3 3 2 0 Vps51/Vps67 DASH_Spc19 PF08287.11 gi|433592906|ref|YP_007282402.1| - 0.21 11.5 16.1 0.52 10.2 6.4 2.2 1 1 1 2 2 2 0 Spc19 Mce4_CUP1 PF11887.8 gi|433592906|ref|YP_007282402.1| - 0.21 11.0 3.7 2.7 7.4 1.1 2.1 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative Atg14 PF10186.9 gi|433592906|ref|YP_007282402.1| - 0.21 10.7 11.1 0.29 10.2 2.2 2.0 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 FH2 PF02181.23 gi|433592906|ref|YP_007282402.1| - 0.21 10.6 7.3 1.1 8.3 1.0 2.1 2 0 0 2 2 2 0 Formin Homology 2 Domain THOC7 PF05615.13 gi|433592906|ref|YP_007282402.1| - 0.22 11.8 18.3 0.68 10.2 4.0 2.4 2 0 0 2 2 2 0 Tho complex subunit 7 YlqD PF11068.8 gi|433592906|ref|YP_007282402.1| - 0.22 11.9 23.0 1.4 9.3 8.7 2.5 2 0 0 2 2 2 0 YlqD protein DUF1107 PF06526.12 gi|433592906|ref|YP_007282402.1| - 0.23 11.4 0.4 2.6 8.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1107) EMP24_GP25L PF01105.24 gi|433592906|ref|YP_007282402.1| - 0.23 11.4 14.4 1.3 9.0 3.6 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Sas10_Utp3 PF04000.15 gi|433592906|ref|YP_007282402.1| - 0.25 12.0 7.7 3.1 8.5 0.6 2.5 2 0 0 2 2 2 0 Sas10/Utp3/C1D family GTP-bdg_M PF16360.5 gi|433592906|ref|YP_007282402.1| - 0.25 11.9 0.1 0.25 11.9 0.1 3.1 2 1 1 3 3 3 0 GTP-binding GTPase Middle Region TMF_DNA_bd PF12329.8 gi|433592906|ref|YP_007282402.1| - 0.25 11.3 22.4 0.086 12.8 6.2 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Nsp1_C PF05064.13 gi|433592906|ref|YP_007282402.1| - 0.26 11.1 17.7 0.55 10.0 5.5 2.3 2 0 0 2 2 2 0 Nsp1-like C-terminal region CLZ PF16526.5 gi|433592906|ref|YP_007282402.1| - 0.26 11.7 16.3 1.2 9.5 4.4 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FUSC PF04632.12 gi|433592906|ref|YP_007282402.1| - 0.26 9.8 5.4 0.47 8.9 5.4 1.4 1 1 0 1 1 1 0 Fusaric acid resistance protein family DUF3138 PF11336.8 gi|433592906|ref|YP_007282402.1| - 0.28 9.8 3.3 0.36 9.4 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) Synaptobrevin PF00957.21 gi|433592906|ref|YP_007282402.1| - 0.29 11.0 15.8 0.081 12.7 5.0 2.8 2 1 1 3 3 3 0 Synaptobrevin AIP3 PF03915.13 gi|433592906|ref|YP_007282402.1| - 0.29 10.2 12.4 0.78 8.8 6.4 2.1 1 1 1 2 2 2 0 Actin interacting protein 3 Cep57_MT_bd PF06657.13 gi|433592906|ref|YP_007282402.1| - 0.3 11.6 14.7 0.61 10.6 4.2 2.5 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 bZIP_1 PF00170.21 gi|433592906|ref|YP_007282402.1| - 0.32 11.1 15.4 0.61 10.2 0.9 3.1 2 1 1 3 3 3 0 bZIP transcription factor Cauli_AT PF03233.13 gi|433592906|ref|YP_007282402.1| - 0.35 10.8 7.7 3.6 7.5 0.8 2.2 2 0 0 2 2 2 0 Aphid transmission protein TBK1_CCD1 PF18394.1 gi|433592906|ref|YP_007282402.1| - 0.35 10.4 6.8 0.62 9.6 0.5 2.2 2 0 0 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 Cluap1 PF10234.9 gi|433592906|ref|YP_007282402.1| - 0.35 10.2 12.4 0.47 9.8 2.0 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 Plk4_PB2 PF18409.1 gi|433592906|ref|YP_007282402.1| - 0.36 11.5 3.0 15 6.3 0.1 2.2 2 0 0 2 2 2 0 Polo-like Kinase 4 Polo Box 2 COG6 PF06419.11 gi|433592906|ref|YP_007282402.1| - 0.37 8.9 10.9 0.47 8.6 2.1 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 Hemerythrin PF01814.23 gi|433592906|ref|YP_007282402.1| - 0.39 11.3 8.0 8 7.1 0.8 2.5 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain DUF3552 PF12072.8 gi|433592906|ref|YP_007282402.1| - 0.41 10.0 19.2 0.12 11.7 6.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) DUF4349 PF14257.6 gi|433592906|ref|YP_007282402.1| - 0.44 9.9 19.9 0.61 9.5 7.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) MCU PF04678.13 gi|433592906|ref|YP_007282402.1| - 0.49 10.5 11.0 0.24 11.5 2.3 2.1 1 1 1 2 2 2 0 Mitochondrial calcium uniporter Tmemb_cc2 PF10267.9 gi|433592906|ref|YP_007282402.1| - 0.49 9.5 12.9 0.39 9.8 2.8 2.0 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein Remorin_C PF03763.13 gi|433592906|ref|YP_007282402.1| - 0.5 10.3 8.9 0.95 9.4 0.5 2.3 2 0 0 2 2 2 0 Remorin, C-terminal region Csm1_N PF18504.1 gi|433592906|ref|YP_007282402.1| - 0.52 10.7 20.6 3 8.2 5.1 2.7 3 0 0 3 3 2 0 Csm1 N-terminal domain Med4 PF10018.9 gi|433592906|ref|YP_007282402.1| - 0.57 9.8 12.9 0.46 10.1 1.7 2.3 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Fzo_mitofusin PF04799.13 gi|433592906|ref|YP_007282402.1| - 0.61 9.6 11.6 2 7.9 2.9 2.2 2 0 0 2 2 2 0 fzo-like conserved region HlyD_2 PF12700.7 gi|433592906|ref|YP_007282402.1| - 0.63 8.7 12.4 0.89 8.2 2.3 2.1 2 0 0 2 2 2 0 HlyD family secretion protein DUF3251 PF11622.8 gi|433592906|ref|YP_007282402.1| - 0.64 9.6 9.4 0.94 9.1 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3251) TolA_bind_tri PF16331.5 gi|433592906|ref|YP_007282402.1| - 0.67 10.1 34.1 0.085 12.9 9.0 2.8 2 1 0 2 2 2 0 TolA binding protein trimerisation PI3K_P85_iSH2 PF16454.5 gi|433592906|ref|YP_007282402.1| - 0.72 9.4 18.5 5.5 6.6 18.5 1.9 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain RasGAP_C PF03836.15 gi|433592906|ref|YP_007282402.1| - 0.72 10.0 8.1 2.1 8.5 1.5 2.3 2 0 0 2 2 2 0 RasGAP C-terminus Hemagglutinin PF00509.18 gi|433592906|ref|YP_007282402.1| - 0.82 8.0 5.7 2.4 6.5 0.2 2.0 2 0 0 2 2 2 0 Haemagglutinin TSNAXIP1_N PF15739.5 gi|433592906|ref|YP_007282402.1| - 0.82 10.1 12.0 0.85 10.0 2.3 2.4 2 0 0 2 2 2 0 Translin-associated factor X-interacting N-terminus PHM7_cyt PF14703.6 gi|433592906|ref|YP_007282402.1| - 0.86 9.8 7.3 2 8.6 1.1 2.3 2 0 0 2 2 2 0 Cytosolic domain of 10TM putative phosphate transporter DUF1515 PF07439.11 gi|433592906|ref|YP_007282402.1| - 0.88 9.6 9.6 0.27 11.3 1.8 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1515) DUF4515 PF14988.6 gi|433592906|ref|YP_007282402.1| - 1 9.2 23.8 1.1 9.0 9.3 2.3 2 1 1 3 3 2 0 Domain of unknown function (DUF4515) MRP-L28 PF09812.9 gi|433592906|ref|YP_007282402.1| - 1 9.5 12.2 3.5 7.7 2.6 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L28 DUF5320 PF17253.2 gi|433592906|ref|YP_007282402.1| - 1 10.4 0.1 1 10.4 0.1 3.8 1 1 2 3 3 1 0 Family of unknown function (DUF5320) FmiP_Thoc5 PF09766.9 gi|433592906|ref|YP_007282402.1| - 1 8.5 11.4 2 7.6 1.2 2.0 2 0 0 2 2 2 0 Fms-interacting protein/Thoc5 DASH_Dad2 PF08654.10 gi|433592906|ref|YP_007282402.1| - 1.1 9.8 15.0 0.97 9.9 1.3 2.8 2 1 0 2 2 2 0 DASH complex subunit Dad2 DegS PF05384.11 gi|433592906|ref|YP_007282402.1| - 1.1 8.8 14.6 2.7 7.5 2.6 2.4 2 0 0 2 2 2 0 Sensor protein DegS Swi5 PF07061.11 gi|433592906|ref|YP_007282402.1| - 1.1 9.4 19.6 1.4 9.1 4.2 2.7 2 1 1 3 3 3 0 Swi5 AKNA PF12443.8 gi|433592906|ref|YP_007282402.1| - 1.2 9.8 16.0 2.6 8.8 3.2 2.4 2 0 0 2 2 2 0 AT-hook-containing transcription factor Acetyltransf_11 PF13720.6 gi|433592906|ref|YP_007282402.1| - 1.2 9.6 3.4 8 7.0 0.2 2.4 2 0 0 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HMMR_N PF15905.5 gi|433592906|ref|YP_007282402.1| - 1.3 8.4 22.8 26 4.1 22.8 2.0 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal USP8_interact PF08941.10 gi|433592906|ref|YP_007282402.1| - 1.3 8.8 9.9 1.4 8.7 0.4 2.1 2 0 0 2 2 2 0 USP8 interacting MIS13 PF08202.11 gi|433592906|ref|YP_007282402.1| - 1.3 8.3 10.7 5 6.3 10.7 1.7 1 1 0 1 1 1 0 Mis12-Mtw1 protein family DUF4140 PF13600.6 gi|433592906|ref|YP_007282402.1| - 1.3 9.5 21.9 4.3 7.8 7.7 3.0 2 2 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) CorA PF01544.18 gi|433592906|ref|YP_007282402.1| - 1.3 8.3 14.6 12 5.1 14.6 2.0 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Rootletin PF15035.6 gi|433592906|ref|YP_007282402.1| - 1.3 9.0 16.7 2.2 8.3 16.7 1.3 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Cep57_CLD_2 PF14197.6 gi|433592906|ref|YP_007282402.1| - 1.3 9.1 21.8 0.21 11.7 6.8 2.6 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 RmuC PF02646.16 gi|433592906|ref|YP_007282402.1| - 1.4 8.0 16.5 2.1 7.4 5.6 2.1 2 0 0 2 2 2 0 RmuC family LMBR1 PF04791.16 gi|433592906|ref|YP_007282402.1| - 1.4 7.7 6.1 2.9 6.7 6.1 1.4 1 1 0 1 1 1 0 LMBR1-like membrane protein KfrA_N PF11740.8 gi|433592906|ref|YP_007282402.1| - 1.4 9.6 27.1 0.61 10.8 9.3 2.6 1 1 0 2 2 2 0 Plasmid replication region DNA-binding N-term Med10 PF09748.9 gi|433592906|ref|YP_007282402.1| - 1.5 8.8 9.8 2.6 8.1 2.1 2.3 2 1 0 2 2 2 0 Transcription factor subunit Med10 of Mediator complex UPF0449 PF15136.6 gi|433592906|ref|YP_007282402.1| - 1.5 9.3 15.7 1 9.9 3.5 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 BRI3BP PF14965.6 gi|433592906|ref|YP_007282402.1| - 1.6 8.2 5.6 2.7 7.5 0.2 2.7 2 1 1 3 3 3 0 Negative regulator of p53/TP53 Geminin PF07412.12 gi|433592906|ref|YP_007282402.1| - 1.7 8.4 13.5 0.12 12.1 3.5 2.1 2 0 0 2 2 2 0 Geminin Fungal_trans_2 PF11951.8 gi|433592906|ref|YP_007282402.1| - 1.7 7.4 3.7 7.3 5.3 0.8 2.0 2 0 0 2 2 2 0 Fungal specific transcription factor domain CASP_C PF08172.12 gi|433592906|ref|YP_007282402.1| - 1.7 7.9 14.1 5.6 6.2 14.1 1.7 1 1 0 1 1 1 0 CASP C terminal Snapin_Pallidin PF14712.6 gi|433592906|ref|YP_007282402.1| - 1.7 9.1 25.1 4.3 7.8 5.2 3.4 2 2 1 3 3 3 0 Snapin/Pallidin DivIVA PF05103.13 gi|433592906|ref|YP_007282402.1| - 1.8 8.6 18.4 1.6 8.8 6.8 2.1 2 0 0 2 2 2 0 DivIVA protein Cnn_1N PF07989.11 gi|433592906|ref|YP_007282402.1| - 1.9 8.7 18.1 0.91 9.7 6.1 2.4 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 BCAS2 PF05700.11 gi|433592906|ref|YP_007282402.1| - 2 8.1 12.7 0.76 9.4 1.7 2.1 2 0 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) T2SSM PF04612.12 gi|433592906|ref|YP_007282402.1| - 2 8.4 15.3 1.5 8.8 0.5 2.5 2 1 1 3 3 3 0 Type II secretion system (T2SS), protein M L31 PF09784.9 gi|433592906|ref|YP_007282402.1| - 2 8.9 4.3 45 4.5 1.1 2.8 2 1 1 3 3 2 0 Mitochondrial ribosomal protein L31 CCDC-167 PF15188.6 gi|433592906|ref|YP_007282402.1| - 2.1 8.7 12.9 5.8 7.3 2.6 2.5 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 bZIP_Maf PF03131.17 gi|433592906|ref|YP_007282402.1| - 2.2 8.9 20.1 6.9 7.3 6.5 2.4 2 1 0 2 2 2 0 bZIP Maf transcription factor zf-C4pol PF14260.6 gi|433592906|ref|YP_007282402.1| - 2.2 8.8 4.4 12 6.4 0.4 2.3 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta Sipho_Gp157 PF05565.11 gi|433592906|ref|YP_007282402.1| - 2.3 8.2 15.2 2.2 8.3 5.2 2.2 1 1 1 2 2 2 0 Siphovirus Gp157 Rho_Binding PF08912.11 gi|433592906|ref|YP_007282402.1| - 2.3 9.1 23.4 5.6 7.9 5.1 2.6 2 1 0 2 2 2 0 Rho Binding Sec2p PF06428.11 gi|433592906|ref|YP_007282402.1| - 2.4 8.2 20.2 2.7 8.0 7.4 2.2 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p Macoilin PF09726.9 gi|433592906|ref|YP_007282402.1| - 2.5 6.5 9.7 1.4 7.4 2.2 2.0 2 0 0 2 2 2 0 Macoilin family Prominin PF05478.11 gi|433592906|ref|YP_007282402.1| - 2.7 5.8 11.9 1.6 6.6 1.5 2.0 1 1 0 2 2 2 0 Prominin COG2 PF06148.11 gi|433592906|ref|YP_007282402.1| - 2.7 8.1 14.5 0.46 10.6 2.9 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 SAS4 PF15460.6 gi|433592906|ref|YP_007282402.1| - 2.8 8.1 14.3 0.2 11.8 3.4 2.8 2 2 1 3 3 2 0 Something about silencing, SAS, complex subunit 4 Alanine_zipper PF11839.8 gi|433592906|ref|YP_007282402.1| - 2.8 8.4 13.9 8.3 6.9 5.2 2.5 2 0 0 2 2 2 0 Alanine-zipper, major outer membrane lipoprotein P4Ha_N PF08336.11 gi|433592906|ref|YP_007282402.1| - 2.9 7.9 10.8 7.5 6.6 2.6 2.2 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region TraF_2 PF13729.6 gi|433592906|ref|YP_007282402.1| - 2.9 7.2 12.8 4.5 6.6 0.7 2.2 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Fungal_TACC PF12709.7 gi|433592906|ref|YP_007282402.1| - 2.9 8.4 17.4 1.9 9.0 4.2 2.6 2 1 0 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins MtrG PF04210.13 gi|433592906|ref|YP_007282402.1| - 2.9 7.8 5.1 7.7 6.5 0.2 2.6 2 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Roughex PF06020.11 gi|433592906|ref|YP_007282402.1| - 3.1 6.8 8.5 5.4 6.0 8.5 1.3 1 0 0 1 1 1 0 Drosophila roughex protein HAUS5 PF14817.6 gi|433592906|ref|YP_007282402.1| - 3.1 6.4 14.3 1.6 7.4 2.9 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 5 Acyl-CoA_dh_C PF12806.7 gi|433592906|ref|YP_007282402.1| - 3.2 7.9 8.0 10 6.3 3.1 2.3 1 1 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like FAM76 PF16046.5 gi|433592906|ref|YP_007282402.1| - 3.2 7.0 6.9 2.5 7.4 0.8 2.1 2 0 0 2 2 2 0 FAM76 protein FPP PF05911.11 gi|433592906|ref|YP_007282402.1| - 3.4 5.8 16.6 0.56 8.3 3.2 2.0 2 0 0 2 2 2 0 Filament-like plant protein, long coiled-coil Wtap PF17098.5 gi|433592906|ref|YP_007282402.1| - 3.4 7.6 15.6 4.9 7.1 2.7 2.4 2 0 0 2 2 2 0 WTAP/Mum2p family SOAR PF16533.5 gi|433592906|ref|YP_007282402.1| - 3.4 7.7 10.7 9.1 6.3 1.0 2.4 2 0 0 2 2 2 0 STIM1 Orai1-activating region Mt_ATP-synt_D PF05873.12 gi|433592906|ref|YP_007282402.1| - 3.5 7.5 7.5 1.9 8.3 1.3 2.1 2 0 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) DUF2968 PF11180.8 gi|433592906|ref|YP_007282402.1| - 3.5 7.2 23.4 3.6 7.2 8.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) HemX PF04375.14 gi|433592906|ref|YP_007282402.1| - 3.7 6.8 25.2 4.1 6.6 7.8 2.1 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Mod_r PF07200.13 gi|433592906|ref|YP_007282402.1| - 3.8 7.6 23.2 65 3.6 23.2 2.0 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein GvpK PF05121.12 gi|433592906|ref|YP_007282402.1| - 3.8 7.6 15.5 4.9 7.3 2.8 2.5 2 0 0 2 2 2 0 Gas vesicle protein K DUF4972 PF16342.5 gi|433592906|ref|YP_007282402.1| - 4 7.1 9.6 4 7.1 3.8 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4972) DUF641 PF04859.12 gi|433592906|ref|YP_007282402.1| - 4 7.8 10.3 2.4 8.5 1.6 2.2 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) AAA_lid_9 PF17871.1 gi|433592906|ref|YP_007282402.1| - 4.1 7.4 14.7 2.1 8.3 5.0 2.3 2 0 0 2 2 2 0 AAA lid domain Filament PF00038.21 gi|433592906|ref|YP_007282402.1| - 4.4 6.8 22.0 3.9 7.0 6.9 2.0 1 1 1 2 2 2 0 Intermediate filament protein Tho2 PF11262.8 gi|433592906|ref|YP_007282402.1| - 4.5 6.4 9.0 1.5 8.0 1.3 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 GARP PF16731.5 gi|433592906|ref|YP_007282402.1| - 4.8 6.8 12.0 7.3 6.2 2.8 2.1 2 0 0 2 2 2 0 Glutamic acid/alanine-rich protein of Trypanosoma Mei5 PF10376.9 gi|433592906|ref|YP_007282402.1| - 4.9 7.0 12.0 9.7 6.0 12.0 1.5 1 1 0 1 1 1 0 Double-strand recombination repair protein DHHA1 PF02272.19 gi|433592906|ref|YP_007282402.1| - 5.2 7.5 10.5 2.3 8.7 1.6 2.4 2 1 0 2 2 2 0 DHHA1 domain APG17 PF04108.12 gi|433592906|ref|YP_007282402.1| - 5.4 6.0 15.8 2.7 7.0 2.1 2.1 1 1 1 2 2 2 0 Autophagy protein Apg17 Nnf1 PF03980.14 gi|433592906|ref|YP_007282402.1| - 5.4 7.4 20.7 5.5 7.4 5.2 2.6 2 1 0 2 2 2 0 Nnf1 DUF932 PF06067.11 gi|433592906|ref|YP_007282402.1| - 5.8 6.6 11.8 4.5 7.0 1.7 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF932) Dynamitin PF04912.14 gi|433592906|ref|YP_007282402.1| - 5.9 6.1 19.7 1 8.6 4.7 2.0 1 1 1 2 2 2 0 Dynamitin zf-CpG_bind_C PF12269.8 gi|433592906|ref|YP_007282402.1| - 5.9 6.6 10.2 6.7 6.4 1.4 2.1 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain Fmp27_WPPW PF10359.9 gi|433592906|ref|YP_007282402.1| - 6.1 5.6 16.0 3 6.6 6.0 2.0 1 1 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain DUF2802 PF10975.8 gi|433592906|ref|YP_007282402.1| - 6.3 7.0 24.8 3.1 8.0 5.8 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2802) MRPL52 PF18699.1 gi|433592906|ref|YP_007282402.1| - 6.7 7.0 13.1 0.78 10.0 2.3 2.2 2 0 0 2 2 2 0 Mitoribosomal protein mL52 WXG100 PF06013.12 gi|433592906|ref|YP_007282402.1| - 7 7.0 20.4 9.9 6.5 3.6 3.5 2 2 1 3 3 3 0 Proteins of 100 residues with WXG E2F_CC-MB PF16421.5 gi|433592906|ref|YP_007282402.1| - 7.1 7.1 22.3 3.9 7.9 3.6 3.0 2 1 0 2 2 2 0 E2F transcription factor CC-MB domain YvrJ PF12841.7 gi|433592906|ref|YP_007282402.1| - 7.1 6.2 7.7 18 5.0 0.6 3.3 3 1 1 4 4 2 0 YvrJ protein family DUF3391 PF11871.8 gi|433592906|ref|YP_007282402.1| - 7.3 7.1 9.7 0.55 10.8 2.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3391) KLRAQ PF10205.9 gi|433592906|ref|YP_007282402.1| - 7.8 6.8 14.6 1.9 8.8 5.4 2.2 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein FbpA PF05833.11 gi|433592906|ref|YP_007282402.1| - 7.8 5.1 16.7 1.9 7.2 4.6 2.1 2 0 0 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) MIP-T3_C PF17749.1 gi|433592906|ref|YP_007282402.1| - 9.3 6.2 21.4 0.74 9.8 4.1 2.4 2 1 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Exonuc_VII_L PF02601.15 gi|433592906|ref|YP_007282402.1| - 9.4 5.7 13.6 99 2.3 13.5 2.0 1 1 0 1 1 1 0 Exonuclease VII, large subunit ABC_tran_CTD PF16326.5 gi|433592906|ref|YP_007282402.1| - 9.5 6.6 33.9 5.5 7.3 2.8 3.6 2 2 1 3 3 3 0 ABC transporter C-terminal domain TPD52 PF04201.15 gi|433592906|ref|YP_007282402.1| - 10 5.7 11.3 3.5 7.2 1.4 2.1 2 0 0 2 2 2 0 Tumour protein D52 family Ribosomal_L18A PF01775.17 gi|433592907|ref|YP_007282403.1| - 6e-09 36.0 0.0 6.5e-09 35.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A ASCH PF04266.14 gi|433592908|ref|YP_007282404.1| - 0.021 15.4 0.0 0.025 15.1 0.0 1.2 1 0 0 1 1 1 0 ASCH domain eIF-6 PF01912.18 gi|433592910|ref|YP_007282406.1| - 1.7e-73 246.2 0.1 2e-73 246.0 0.1 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|433592911|ref|YP_007282407.1| - 9.5e-09 35.4 0.1 1.2e-08 35.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|433592912|ref|YP_007282408.1| - 2.1e-20 72.0 8.3 2.5e-20 71.8 8.3 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Peptidase_M48 PF01435.18 gi|433592913|ref|YP_007282409.1| - 1.2e-25 90.5 0.2 3.5e-25 88.9 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|433592913|ref|YP_007282409.1| - 1.2e-05 24.7 0.3 1.2e-05 24.7 0.3 2.2 2 1 1 3 3 3 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|433592913|ref|YP_007282409.1| - 0.01 15.7 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 SprT-like family Anoctamin PF04547.12 gi|433592913|ref|YP_007282409.1| - 0.056 12.3 0.7 0.083 11.7 0.7 1.2 1 0 0 1 1 1 0 Calcium-activated chloride channel Mlo PF03094.15 gi|433592913|ref|YP_007282409.1| - 0.11 10.8 4.1 0.16 10.3 4.1 1.2 1 0 0 1 1 1 0 Mlo family DUF4157 PF13699.6 gi|433592913|ref|YP_007282409.1| - 0.13 12.5 0.1 0.24 11.7 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) TBP-binding PF09247.11 gi|433592914|ref|YP_007282410.1| - 0.041 14.1 0.1 0.11 12.8 0.1 1.7 1 1 0 1 1 1 0 TATA box-binding protein binding LigT_PEase PF02834.16 gi|433592915|ref|YP_007282411.1| - 5.4e-26 90.6 0.0 9.8e-13 48.1 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|433592915|ref|YP_007282411.1| - 6.3e-20 71.6 0.1 7.1e-20 71.5 0.1 1.0 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|433592915|ref|YP_007282411.1| - 3.2e-08 33.7 0.0 3.9e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|433592915|ref|YP_007282411.1| - 0.013 14.9 0.0 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein Amino_oxidase PF01593.24 gi|433592916|ref|YP_007282412.1| - 1.6e-25 90.3 1.4 3.1e-25 89.4 1.4 1.5 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|433592916|ref|YP_007282412.1| - 4e-14 52.6 0.1 1.8e-13 50.5 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|433592916|ref|YP_007282412.1| - 6.1e-11 42.0 1.3 2.5e-07 30.2 0.7 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|433592916|ref|YP_007282412.1| - 1.1e-10 41.3 0.1 1.2e-05 24.7 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|433592916|ref|YP_007282412.1| - 6.7e-10 39.1 9.7 1.3e-09 38.1 5.2 2.7 1 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|433592916|ref|YP_007282412.1| - 5.3e-08 33.3 0.0 0.00012 22.5 0.2 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|433592916|ref|YP_007282412.1| - 5.5e-08 31.9 0.0 3.6e-05 22.6 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein MCRA PF06100.11 gi|433592916|ref|YP_007282412.1| - 4.3e-06 25.8 0.0 0.1 11.4 0.0 3.5 3 1 0 3 3 3 2 MCRA family FAD_oxidored PF12831.7 gi|433592916|ref|YP_007282412.1| - 1e-05 25.1 0.1 2.4e-05 23.9 0.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|433592916|ref|YP_007282412.1| - 7.7e-05 22.0 0.2 0.00012 21.4 0.2 1.2 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|433592916|ref|YP_007282412.1| - 0.00017 20.9 0.1 0.00084 18.7 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|433592916|ref|YP_007282412.1| - 0.0076 15.4 0.3 0.016 14.3 0.2 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|433592916|ref|YP_007282412.1| - 0.012 15.6 0.1 0.64 10.0 0.1 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|433592916|ref|YP_007282412.1| - 0.026 13.6 0.1 0.048 12.7 0.1 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|433592916|ref|YP_007282412.1| - 0.035 14.0 0.1 0.06 13.2 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FMO-like PF00743.19 gi|433592916|ref|YP_007282412.1| - 0.036 12.5 0.0 0.047 12.1 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like AlaDh_PNT_C PF01262.21 gi|433592916|ref|YP_007282412.1| - 0.042 13.2 0.1 0.063 12.6 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TPR_1 PF00515.28 gi|433592917|ref|YP_007282413.1| - 8.5e-21 72.8 7.4 5.8e-06 25.9 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|433592917|ref|YP_007282413.1| - 9.5e-17 59.7 16.6 0.0012 18.8 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|433592917|ref|YP_007282413.1| - 1.6e-14 54.3 14.6 1.4e-08 35.2 2.7 3.2 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|433592917|ref|YP_007282413.1| - 1.7e-14 52.7 7.5 0.032 14.4 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|433592917|ref|YP_007282413.1| - 2.8e-13 50.0 19.7 7.2e-10 39.0 5.8 3.7 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|433592917|ref|YP_007282413.1| - 9.6e-10 37.8 13.1 0.00074 19.4 0.2 4.6 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|433592917|ref|YP_007282413.1| - 1.3e-08 34.6 0.2 0.011 16.0 0.0 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|433592917|ref|YP_007282413.1| - 2e-07 31.3 18.2 0.0018 18.9 0.8 4.7 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|433592917|ref|YP_007282413.1| - 6.5e-07 29.4 10.0 0.022 14.9 0.4 4.1 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|433592917|ref|YP_007282413.1| - 1.8e-06 27.6 19.9 0.0015 18.4 0.4 5.2 5 1 0 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|433592917|ref|YP_007282413.1| - 1.2e-05 24.8 5.5 0.13 12.0 0.0 4.1 2 1 2 4 4 4 2 TPR repeat TPR_4 PF07721.14 gi|433592917|ref|YP_007282413.1| - 0.0002 21.6 11.9 0.12 13.1 0.5 4.8 5 0 0 5 5 4 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|433592917|ref|YP_007282413.1| - 0.00062 18.8 0.3 0.0016 17.5 0.0 1.6 1 1 0 1 1 1 1 NMDA receptor-regulated protein 1 TPR_19 PF14559.6 gi|433592917|ref|YP_007282413.1| - 0.00064 20.2 12.0 0.14 12.7 1.1 3.6 1 1 2 4 4 4 3 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|433592917|ref|YP_007282413.1| - 0.0012 18.9 5.9 0.081 13.0 1.5 3.2 1 1 2 3 3 3 1 Anaphase-promoting complex subunit 5 ANAPC3 PF12895.7 gi|433592917|ref|YP_007282413.1| - 0.023 14.9 3.4 2.4 8.4 0.1 2.5 1 1 2 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|433592917|ref|YP_007282413.1| - 0.032 14.9 5.5 34 5.4 0.0 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat Mad3_BUB1_I PF08311.12 gi|433592917|ref|YP_007282413.1| - 0.042 13.8 1.0 2.2 8.3 0.1 2.3 1 1 1 2 2 2 0 Mad3/BUB1 homology region 1 Acetyltransf_11 PF13720.6 gi|433592917|ref|YP_007282413.1| - 0.089 13.3 0.3 0.25 11.8 0.3 1.7 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RhlB PF12300.8 gi|433592917|ref|YP_007282413.1| - 0.56 10.3 5.7 1 9.5 5.7 1.3 1 0 0 1 1 1 0 ATP-dependent RNA helicase RhlB DUF424 PF04242.13 gi|433592918|ref|YP_007282414.1| - 1.3e-30 105.5 0.3 1.4e-30 105.4 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) ABC2_membrane_2 PF12679.7 gi|433592919|ref|YP_007282415.1| - 4.3e-45 154.2 4.9 4.5e-44 150.9 4.9 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|433592919|ref|YP_007282415.1| - 5.7e-08 32.9 4.8 5.7e-08 32.9 4.8 1.7 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|433592919|ref|YP_007282415.1| - 1.1e-07 31.3 8.4 1.1e-07 31.3 8.4 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|433592919|ref|YP_007282415.1| - 3.1e-05 23.6 1.9 3.1e-05 23.6 1.9 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|433592919|ref|YP_007282415.1| - 0.00058 19.3 8.2 0.001 18.5 8.2 1.3 1 0 0 1 1 1 1 ABC-2 type transporter DUF3464 PF11947.8 gi|433592919|ref|YP_007282415.1| - 2.9 7.6 5.1 7.1 6.4 5.1 1.6 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 YjbE PF11106.8 gi|433592919|ref|YP_007282415.1| - 3.3 8.0 6.5 0.26 11.5 0.6 2.1 2 0 0 2 2 2 0 Exopolysaccharide production protein YjbE DUF4564 PF15169.6 gi|433592919|ref|YP_007282415.1| - 9.7 5.9 5.4 1.2 8.8 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4564) ABC_tran PF00005.27 gi|433592920|ref|YP_007282416.1| - 1.8e-22 80.3 0.0 3e-22 79.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433592920|ref|YP_007282416.1| - 8.6e-11 42.2 0.1 4.6e-07 30.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|433592920|ref|YP_007282416.1| - 0.00057 20.5 0.0 0.001 19.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) BAT PF15915.5 gi|433592920|ref|YP_007282416.1| - 0.00071 19.5 7.0 0.0014 18.6 6.4 1.7 1 1 0 1 1 1 1 GAF and HTH_10 associated domain AAA_16 PF13191.6 gi|433592920|ref|YP_007282416.1| - 0.011 16.1 0.0 0.029 14.8 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|433592920|ref|YP_007282416.1| - 0.012 15.9 0.0 0.04 14.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|433592920|ref|YP_007282416.1| - 0.015 15.8 0.0 0.023 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|433592920|ref|YP_007282416.1| - 0.018 15.0 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|433592920|ref|YP_007282416.1| - 0.027 14.2 0.0 0.11 12.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|433592920|ref|YP_007282416.1| - 0.037 13.8 0.0 0.078 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|433592920|ref|YP_007282416.1| - 0.061 13.4 0.2 0.89 9.7 0.0 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase ACT PF01842.25 gi|433592920|ref|YP_007282416.1| - 0.082 12.7 0.9 0.39 10.5 0.6 2.2 2 0 0 2 2 2 0 ACT domain AAA_27 PF13514.6 gi|433592920|ref|YP_007282416.1| - 0.13 11.8 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain HTH_20 PF12840.7 gi|433592921|ref|YP_007282417.1| - 1.1e-06 28.5 0.2 1.6e-06 28.1 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433592921|ref|YP_007282417.1| - 0.00014 21.6 0.0 0.00021 21.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|433592921|ref|YP_007282417.1| - 0.00026 20.5 0.0 0.0005 19.6 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|433592921|ref|YP_007282417.1| - 0.0014 18.7 0.6 0.0063 16.6 0.6 2.0 1 1 0 1 1 1 1 DprA winged helix domain HTH_IclR PF09339.10 gi|433592921|ref|YP_007282417.1| - 0.0015 18.3 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|433592921|ref|YP_007282417.1| - 0.0022 17.9 0.0 0.0036 17.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|433592921|ref|YP_007282417.1| - 0.0028 17.6 0.0 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|433592921|ref|YP_007282417.1| - 0.0037 17.2 0.0 0.0055 16.6 0.0 1.2 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|433592921|ref|YP_007282417.1| - 0.0054 16.9 0.0 0.0092 16.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|433592921|ref|YP_007282417.1| - 0.016 15.1 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|433592921|ref|YP_007282417.1| - 0.018 15.0 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|433592921|ref|YP_007282417.1| - 0.022 14.6 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|433592921|ref|YP_007282417.1| - 0.023 14.4 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|433592921|ref|YP_007282417.1| - 0.024 14.5 0.6 0.056 13.3 0.6 1.8 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|433592921|ref|YP_007282417.1| - 0.028 13.8 0.1 2.1 7.8 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 Ribonuc_red_lgN PF00317.21 gi|433592921|ref|YP_007282417.1| - 0.045 13.8 0.2 0.079 13.0 0.1 1.5 1 1 0 1 1 1 0 Ribonucleotide reductase, all-alpha domain HTH_29 PF13551.6 gi|433592921|ref|YP_007282417.1| - 0.059 13.4 0.0 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix TetR_N PF00440.23 gi|433592921|ref|YP_007282417.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Cullin_Nedd8 PF10557.9 gi|433592921|ref|YP_007282417.1| - 0.13 12.3 0.1 1 9.5 0.0 2.0 2 0 0 2 2 2 0 Cullin protein neddylation domain Acyl_transf_3 PF01757.22 gi|433592922|ref|YP_007282418.1| - 0.015 14.3 1.0 0.015 14.4 1.0 1.1 1 0 0 1 1 1 0 Acyltransferase family Polysacc_synt_C PF14667.6 gi|433592922|ref|YP_007282418.1| - 0.037 14.1 5.4 0.046 13.8 5.4 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain SNARE_assoc PF09335.11 gi|433592922|ref|YP_007282418.1| - 0.061 13.8 7.3 0.16 12.5 7.3 1.6 1 1 0 1 1 1 0 SNARE associated Golgi protein MLANA PF14991.6 gi|433592922|ref|YP_007282418.1| - 0.15 12.3 0.6 0.32 11.3 0.2 1.7 1 1 1 2 2 2 0 Protein melan-A TMEM95 PF15203.6 gi|433592922|ref|YP_007282418.1| - 0.17 11.5 0.0 0.21 11.2 0.0 1.1 1 0 0 1 1 1 0 TMEM95 family DUF2070 PF09843.9 gi|433592922|ref|YP_007282418.1| - 0.19 9.9 1.3 0.2 9.9 1.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TraS PF10624.9 gi|433592923|ref|YP_007282419.1| - 0.014 15.3 0.2 0.019 14.9 0.2 1.2 1 0 0 1 1 1 0 Plasmid conjugative transfer entry exclusion protein TraS SLATT_1 PF18181.1 gi|433592923|ref|YP_007282419.1| - 0.058 13.3 0.7 0.058 13.3 0.7 1.8 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 DUF4231 PF14015.6 gi|433592923|ref|YP_007282419.1| - 0.94 10.0 3.3 3.3 8.2 3.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) Sensor PF13796.6 gi|433592924|ref|YP_007282420.1| - 1.3e-31 109.9 15.3 3.2e-26 92.3 5.1 2.0 1 1 1 2 2 2 2 Putative sensor Suv3_C_1 PF18147.1 gi|433592924|ref|YP_007282420.1| - 0.79 9.6 2.8 32 4.5 0.5 3.2 3 0 0 3 3 3 0 Suv3 C-terminal domain 1 Glyco_trans_2_3 PF13632.6 gi|433592924|ref|YP_007282420.1| - 5.5 6.8 9.5 0.11 12.4 0.6 2.4 3 0 0 3 3 3 0 Glycosyl transferase family group 2 Aminotran_5 PF00266.19 gi|433592925|ref|YP_007282421.1| - 2.9e-151 503.6 0.0 3.3e-151 503.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|433592925|ref|YP_007282421.1| - 2.5e-08 33.6 0.8 4.3e-08 32.9 0.8 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|433592925|ref|YP_007282421.1| - 0.0027 16.3 0.0 0.0045 15.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.13 gi|433592925|ref|YP_007282421.1| - 0.014 14.4 0.1 0.045 12.7 0.1 1.7 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase Pyridoxal_deC PF00282.19 gi|433592925|ref|YP_007282421.1| - 0.12 11.0 0.1 0.21 10.2 0.1 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Response_reg PF00072.24 gi|433592926|ref|YP_007282422.1| - 5.1e-16 58.8 0.0 6e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HD PF01966.22 gi|433592927|ref|YP_007282423.1| - 2e-13 50.7 2.7 3.3e-13 49.9 2.7 1.3 1 0 0 1 1 1 1 HD domain DUF4202 PF13875.6 gi|433592927|ref|YP_007282423.1| - 1.5e-05 25.0 0.3 0.00036 20.5 0.3 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4202) NifU_N PF01592.16 gi|433592928|ref|YP_007282424.1| - 2.2e-28 98.9 0.1 2.7e-28 98.7 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.15 gi|433592928|ref|YP_007282424.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Fe-S metabolism associated domain TSCPD PF12637.7 gi|433592928|ref|YP_007282424.1| - 0.12 12.6 0.1 0.19 12.0 0.1 1.3 1 0 0 1 1 1 0 TSCPD domain IucA_IucC PF04183.12 gi|433592929|ref|YP_007282425.1| - 3.8e-72 242.7 0.0 5.3e-72 242.2 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|433592929|ref|YP_007282425.1| - 4e-41 141.1 0.2 7.1e-41 140.3 0.2 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter K_oxygenase PF13434.6 gi|433592930|ref|YP_007282426.1| - 1.1e-108 363.4 0.0 1.6e-108 362.9 0.0 1.2 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_2 PF07992.14 gi|433592930|ref|YP_007282426.1| - 0.00027 20.3 0.0 0.0014 17.9 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|433592930|ref|YP_007282426.1| - 0.0044 17.0 0.1 0.38 10.7 0.0 3.1 4 0 0 4 4 4 1 FAD-NAD(P)-binding Acetyltransf_8 PF13523.6 gi|433592931|ref|YP_007282427.1| - 5.4e-48 162.4 0.3 5.4e-48 162.4 0.3 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|433592931|ref|YP_007282427.1| - 4.4e-08 33.9 0.0 1.1e-07 32.5 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain IucA_IucC PF04183.12 gi|433592932|ref|YP_007282428.1| - 3.4e-60 203.6 0.0 4.7e-60 203.1 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|433592932|ref|YP_007282428.1| - 6.8e-33 114.4 0.0 1.1e-32 113.7 0.0 1.3 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Pyridoxal_deC PF00282.19 gi|433592933|ref|YP_007282429.1| - 3.7e-61 206.9 0.0 4.7e-61 206.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.21 gi|433592933|ref|YP_007282429.1| - 7.2e-05 22.2 0.0 0.00017 21.0 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|433592933|ref|YP_007282429.1| - 0.11 11.4 0.0 0.26 10.2 0.0 1.5 2 0 0 2 2 2 0 Aminotransferase class-V Aminotran_3 PF00202.21 gi|433592934|ref|YP_007282430.1| - 2.6e-93 312.9 0.0 3.2e-93 312.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Rad51 PF08423.11 gi|433592935|ref|YP_007282431.1| - 3.8e-74 249.2 0.1 2.1e-73 246.7 0.1 1.8 1 1 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|433592935|ref|YP_007282431.1| - 5.1e-12 46.2 0.0 1.6e-11 44.7 0.0 1.9 2 0 0 2 2 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|433592935|ref|YP_007282431.1| - 2.6e-08 33.3 0.1 0.00049 19.8 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif AAA_25 PF13481.6 gi|433592935|ref|YP_007282431.1| - 4.2e-08 33.0 0.2 6.3e-08 32.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|433592935|ref|YP_007282431.1| - 3.5e-07 30.0 0.0 0.011 15.2 0.0 2.2 1 1 0 2 2 2 2 recA bacterial DNA recombination protein HHH_2 PF12826.7 gi|433592935|ref|YP_007282431.1| - 1.4e-06 28.3 0.1 5.3e-06 26.4 0.0 2.1 2 0 0 2 2 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|433592935|ref|YP_007282431.1| - 7.1e-05 23.0 0.0 0.00021 21.4 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|433592935|ref|YP_007282431.1| - 0.0002 21.1 0.0 0.0013 18.5 0.0 2.4 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda ATPase PF06745.13 gi|433592935|ref|YP_007282431.1| - 0.00058 19.3 0.1 0.0022 17.4 0.0 1.9 2 0 0 2 2 2 1 KaiC IMS_HHH PF11798.8 gi|433592935|ref|YP_007282431.1| - 0.0066 16.7 0.0 0.031 14.6 0.0 2.2 2 0 0 2 2 2 1 IMS family HHH motif DUF4332 PF14229.6 gi|433592935|ref|YP_007282431.1| - 0.009 16.2 0.0 0.023 14.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) HHH_3 PF12836.7 gi|433592935|ref|YP_007282431.1| - 0.035 14.4 0.0 15 6.0 0.0 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|433592935|ref|YP_007282431.1| - 0.094 13.1 0.0 0.97 9.8 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain BAF PF02961.14 gi|433592935|ref|YP_007282431.1| - 0.14 12.7 0.0 0.44 11.0 0.0 1.9 2 0 0 2 2 2 0 Barrier to autointegration factor AAA_22 PF13401.6 gi|433592935|ref|YP_007282431.1| - 0.15 12.3 0.2 0.7 10.2 0.2 2.1 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|433592935|ref|YP_007282431.1| - 0.16 11.9 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea PQQ_3 PF13570.6 gi|433592936|ref|YP_007282432.1| - 3.1e-44 148.4 41.9 6.7e-08 32.8 1.6 8.6 9 0 0 9 9 9 8 PQQ-like domain PQQ_2 PF13360.6 gi|433592936|ref|YP_007282432.1| - 9.7e-44 149.7 15.3 3.4e-15 56.3 0.8 4.0 2 2 2 4 4 4 4 PQQ-like domain PQQ PF01011.21 gi|433592936|ref|YP_007282432.1| - 1.4e-23 81.6 11.9 5.8e-05 22.8 0.1 6.9 6 0 0 6 6 6 6 PQQ enzyme repeat US22 PF02393.16 gi|433592936|ref|YP_007282432.1| - 0.24 11.7 1.9 0.65 10.3 0.5 2.3 2 1 0 2 2 2 0 US22 like Peptidase_M48 PF01435.18 gi|433592938|ref|YP_007282434.1| - 1e-42 146.2 0.0 1.6e-42 145.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|433592938|ref|YP_007282434.1| - 2e-06 27.2 5.0 3.3e-06 26.5 0.0 2.5 3 0 0 3 3 3 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|433592938|ref|YP_007282434.1| - 0.0033 17.3 0.0 0.0052 16.6 0.0 1.3 1 0 0 1 1 1 1 SprT-like family LptF_LptG PF03739.14 gi|433592938|ref|YP_007282434.1| - 0.25 10.2 0.0 0.25 10.2 0.0 2.1 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG DUF1700 PF08006.11 gi|433592938|ref|YP_007282434.1| - 6.9 6.2 7.4 12 5.4 3.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) Creatininase PF02633.14 gi|433592939|ref|YP_007282435.1| - 9.1e-67 225.0 1.0 1e-66 224.9 1.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase NMD3 PF04981.13 gi|433592940|ref|YP_007282436.1| - 2.7e-64 217.0 0.1 3.2e-64 216.7 0.1 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|433592940|ref|YP_007282436.1| - 0.0027 17.7 4.4 0.16 12.0 3.1 3.0 2 1 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|433592940|ref|YP_007282436.1| - 0.0051 16.5 4.1 0.39 10.5 0.1 3.5 3 0 0 3 3 3 1 zinc-ribbon domain Rpr2 PF04032.16 gi|433592940|ref|YP_007282436.1| - 0.0055 17.0 0.1 0.66 10.3 0.0 3.1 3 0 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain PknG_rubred PF16919.5 gi|433592940|ref|YP_007282436.1| - 0.014 15.5 5.7 0.052 13.7 0.2 3.1 2 1 1 3 3 3 0 Protein kinase G rubredoxin domain FYVE PF01363.21 gi|433592940|ref|YP_007282436.1| - 0.1 12.7 0.9 5.6 7.2 1.0 2.8 2 1 0 2 2 2 0 FYVE zinc finger GFA PF04828.14 gi|433592940|ref|YP_007282436.1| - 0.11 12.8 3.3 8.5 6.8 0.1 3.4 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf_UBZ PF18439.1 gi|433592940|ref|YP_007282436.1| - 0.42 10.2 5.8 2.6 7.7 0.1 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|433592940|ref|YP_007282436.1| - 0.58 9.6 8.3 2.6 7.6 0.1 3.5 4 0 0 4 4 4 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|433592940|ref|YP_007282436.1| - 1.6 8.8 15.3 11 6.0 0.3 3.9 3 1 0 3 3 3 0 Nudix N-terminal zf-tcix PF14952.6 gi|433592940|ref|YP_007282436.1| - 2.3 7.9 6.0 16 5.2 0.1 3.2 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-NADH-PPase PF09297.11 gi|433592940|ref|YP_007282436.1| - 4 7.2 12.5 0.99 9.1 0.8 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.9 gi|433592940|ref|YP_007282436.1| - 5.4 7.2 9.1 33 4.7 0.9 3.4 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Met_10 PF02475.16 gi|433592941|ref|YP_007282437.1| - 2e-48 164.8 0.0 2e-46 158.2 0.0 2.2 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|433592941|ref|YP_007282437.1| - 3.8e-05 23.3 0.0 5.4e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|433592941|ref|YP_007282437.1| - 0.00033 20.2 0.0 0.0019 17.8 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|433592941|ref|YP_007282437.1| - 0.00092 19.9 0.0 0.0027 18.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|433592941|ref|YP_007282437.1| - 0.0028 16.7 0.0 0.0041 16.2 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase PrmA PF06325.13 gi|433592941|ref|YP_007282437.1| - 0.015 14.7 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.17 gi|433592941|ref|YP_007282437.1| - 0.019 14.3 0.0 0.025 13.9 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_11 PF08241.12 gi|433592941|ref|YP_007282437.1| - 0.04 14.6 0.0 0.14 12.8 0.0 2.1 2 1 0 2 2 2 0 Methyltransferase domain YflT PF11181.8 gi|433592941|ref|YP_007282437.1| - 0.042 14.4 0.1 0.18 12.3 0.0 2.1 3 0 0 3 3 3 0 Heat induced stress protein YflT Trm5_N PF18093.1 gi|433592941|ref|YP_007282437.1| - 0.16 11.9 0.0 0.4 10.6 0.0 1.6 1 0 0 1 1 1 0 tRNA methyltransferase 5 N-terminal domain Helicase_C_2 PF13307.6 gi|433592942|ref|YP_007282438.1| - 4.8e-20 72.4 0.0 7e-20 71.9 0.0 1.2 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|433592942|ref|YP_007282438.1| - 5.8e-06 26.1 0.0 8.8e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 DEAD_2 AAA_30 PF13604.6 gi|433592942|ref|YP_007282438.1| - 9.9e-05 22.1 0.3 0.18 11.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain ResIII PF04851.15 gi|433592942|ref|YP_007282438.1| - 0.00011 22.3 0.0 0.034 14.1 0.0 2.6 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|433592942|ref|YP_007282438.1| - 0.00045 20.5 0.0 0.0017 18.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain DEAD PF00270.29 gi|433592942|ref|YP_007282438.1| - 0.00074 19.3 0.0 0.32 10.7 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|433592942|ref|YP_007282438.1| - 0.0041 17.5 0.7 0.016 15.6 0.4 2.4 2 1 0 2 2 2 1 AAA ATPase domain OrsD PF12013.8 gi|433592942|ref|YP_007282438.1| - 0.018 15.5 0.1 0.036 14.5 0.1 1.4 1 0 0 1 1 1 0 Orsellinic acid/F9775 biosynthesis cluster protein D DXP_redisom_C PF08436.12 gi|433592942|ref|YP_007282438.1| - 0.048 13.8 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AAA_19 PF13245.6 gi|433592942|ref|YP_007282438.1| - 0.087 13.2 0.0 0.22 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|433592942|ref|YP_007282438.1| - 0.12 11.8 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|433592942|ref|YP_007282438.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|433592942|ref|YP_007282438.1| - 0.13 11.6 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CxxCxxCC PF03692.15 gi|433592944|ref|YP_007282440.1| - 4.3e-05 24.1 1.3 0.021 15.5 0.0 2.3 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain DDE_Tnp_IS240 PF13610.6 gi|433592946|ref|YP_007282442.1| - 1.3e-14 54.6 0.1 1.8e-14 54.1 0.1 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.14 gi|433592946|ref|YP_007282442.1| - 9.7e-06 25.3 0.0 3e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.6 gi|433592946|ref|YP_007282442.1| - 0.0036 17.1 0.0 0.03 14.1 0.0 2.1 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|433592946|ref|YP_007282442.1| - 0.062 12.9 3.0 0.36 10.4 0.5 2.3 1 1 1 2 2 2 0 Transposase DDE domain rve PF00665.26 gi|433592946|ref|YP_007282442.1| - 0.13 12.5 0.2 0.36 11.0 0.2 1.7 1 1 0 1 1 1 0 Integrase core domain ADH_N PF08240.12 gi|433592947|ref|YP_007282443.1| - 4.8e-27 94.0 0.9 8.4e-27 93.2 0.9 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|433592947|ref|YP_007282443.1| - 3.5e-24 85.3 0.3 6.1e-24 84.5 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|433592947|ref|YP_007282443.1| - 4.5e-06 26.1 2.3 5.1e-06 25.9 0.9 1.6 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N_2 PF13602.6 gi|433592947|ref|YP_007282443.1| - 0.0015 19.6 0.0 0.0032 18.5 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|433592947|ref|YP_007282443.1| - 0.012 15.0 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|433592947|ref|YP_007282443.1| - 0.02 14.6 0.1 0.033 13.9 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GCV_H PF01597.19 gi|433592947|ref|YP_007282443.1| - 0.025 14.5 0.2 0.065 13.1 0.2 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein Methyltransf_25 PF13649.6 gi|433592947|ref|YP_007282443.1| - 0.052 14.3 0.3 0.23 12.2 0.1 2.1 2 0 0 2 2 2 0 Methyltransferase domain TrkA_N PF02254.18 gi|433592947|ref|YP_007282443.1| - 0.11 12.7 0.3 0.23 11.7 0.3 1.5 1 0 0 1 1 1 0 TrkA-N domain DUF2795 PF11387.8 gi|433592948|ref|YP_007282444.1| - 0.015 15.5 0.0 0.2 11.9 0.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2795) PHP PF02811.19 gi|433592949|ref|YP_007282445.1| - 2.4e-05 24.7 0.0 3.2e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|433592949|ref|YP_007282445.1| - 0.0027 17.4 0.2 0.0075 16.0 0.1 1.8 2 0 0 2 2 2 1 PHP-associated MinC_N PF05209.13 gi|433592949|ref|YP_007282445.1| - 0.15 12.0 0.0 4.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Septum formation inhibitor MinC, N-terminal domain E3_UbLigase_RBR PF18091.1 gi|433592950|ref|YP_007282446.1| - 0.035 14.2 0.1 0.037 14.1 0.1 1.2 1 0 0 1 1 1 0 E3 Ubiquitin Ligase RBR C-terminal domain Fer4_7 PF12838.7 gi|433592951|ref|YP_007282447.1| - 1.3e-12 48.1 23.7 7.1e-07 29.7 9.0 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|433592951|ref|YP_007282447.1| - 3.2e-12 45.7 16.8 6.7e-07 28.9 5.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|433592951|ref|YP_007282447.1| - 1.4e-08 34.7 5.8 2.2e-08 34.1 5.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433592951|ref|YP_007282447.1| - 7.5e-08 32.4 18.8 4.8e-06 26.6 8.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|433592951|ref|YP_007282447.1| - 7.1e-07 29.0 16.6 5.2e-05 23.1 6.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|433592951|ref|YP_007282447.1| - 2.8e-06 27.8 1.3 0.021 15.4 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|433592951|ref|YP_007282447.1| - 2.8e-06 27.4 11.6 1.3e-05 25.3 11.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|433592951|ref|YP_007282447.1| - 3.6e-06 27.8 5.6 0.00032 21.6 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|433592951|ref|YP_007282447.1| - 5.8e-05 23.5 7.0 0.0019 18.6 7.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|433592951|ref|YP_007282447.1| - 5.8e-05 22.9 12.4 0.0048 16.9 4.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|433592951|ref|YP_007282447.1| - 0.00012 22.3 6.5 0.00066 20.0 1.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|433592951|ref|YP_007282447.1| - 0.00014 22.0 10.2 0.00024 21.3 2.9 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|433592951|ref|YP_007282447.1| - 0.0008 19.9 16.5 0.026 15.1 16.5 2.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|433592951|ref|YP_007282447.1| - 0.0016 18.6 0.3 0.002 18.2 0.3 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_3 PF12798.7 gi|433592951|ref|YP_007282447.1| - 0.002 19.0 12.4 0.0023 18.7 4.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|433592951|ref|YP_007282447.1| - 2.6 8.9 17.8 25 5.7 17.8 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain Aldedh PF00171.22 gi|433592952|ref|YP_007282448.1| - 3.9e-151 503.7 0.0 4.7e-151 503.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family ALAD PF00490.21 gi|433592953|ref|YP_007282449.1| - 4.1e-142 473.0 0.1 4.7e-142 472.8 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase DUF1684 PF07920.11 gi|433592953|ref|YP_007282449.1| - 0.1 12.9 0.0 0.27 11.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1684) Ammonium_transp PF00909.21 gi|433592954|ref|YP_007282450.1| - 4.6e-95 318.6 37.8 5.6e-95 318.4 37.8 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|433592954|ref|YP_007282450.1| - 1.6e-31 108.9 0.0 3.2e-31 107.9 0.0 1.5 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II PsbY PF06298.11 gi|433592954|ref|YP_007282450.1| - 0.019 14.8 0.1 0.019 14.8 0.1 2.9 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) bPH_2 PF03703.14 gi|433592955|ref|YP_007282451.1| - 6.3e-06 26.3 1.9 1.2e-05 25.4 1.9 1.4 1 0 0 1 1 1 1 Bacterial PH domain Phage_holin_3_6 PF07332.11 gi|433592955|ref|YP_007282451.1| - 0.013 15.5 0.2 0.021 14.8 0.2 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III SecA_PP_bind PF01043.20 gi|433592955|ref|YP_007282451.1| - 0.17 12.5 0.1 0.25 12.0 0.1 1.2 1 0 0 1 1 1 0 SecA preprotein cross-linking domain DUF3093 PF11292.8 gi|433592955|ref|YP_007282451.1| - 0.31 11.3 4.2 0.51 10.6 4.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3093) Aminotran_3 PF00202.21 gi|433592956|ref|YP_007282452.1| - 5e-67 226.3 0.0 6.6e-67 225.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III PAN_4 PF14295.6 gi|433592956|ref|YP_007282452.1| - 0.05 13.5 1.1 0.11 12.4 1.1 1.5 1 0 0 1 1 1 0 PAN domain DUF4232 PF14016.6 gi|433592957|ref|YP_007282453.1| - 0.045 13.9 2.0 5.1 7.2 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4232) COX1 PF00115.20 gi|433592958|ref|YP_007282454.1| - 4.8e-58 197.0 50.5 4.8e-58 197.0 50.5 1.5 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Bac_globin PF01152.21 gi|433592959|ref|YP_007282455.1| - 8.2e-23 80.8 0.0 9.1e-23 80.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|433592959|ref|YP_007282455.1| - 0.00043 20.2 0.0 0.0012 18.8 0.0 1.7 1 1 0 1 1 1 1 Protoglobin Porphobil_deam PF01379.20 gi|433592960|ref|YP_007282456.1| - 8e-65 218.2 0.2 6.5e-51 172.7 0.1 2.2 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|433592960|ref|YP_007282456.1| - 1.3e-08 35.1 0.0 4e-08 33.5 0.0 1.8 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain DUF917 PF06032.12 gi|433592960|ref|YP_007282456.1| - 0.00084 18.3 0.1 0.11 11.3 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF917) TP_methylase PF00590.20 gi|433592961|ref|YP_007282457.1| - 3.2e-58 197.2 1.3 3.9e-58 196.9 1.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.15 gi|433592962|ref|YP_007282458.1| - 8.7e-42 143.0 4.6 1e-41 142.8 4.6 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DAHP_snth_FXD PF18152.1 gi|433592962|ref|YP_007282458.1| - 0.027 14.3 0.0 0.062 13.1 0.0 1.6 1 0 0 1 1 1 0 DAHP synthase ferredoxin-like domain PGA_cap PF09587.10 gi|433592963|ref|YP_007282459.1| - 5.7e-60 202.9 0.0 7.2e-60 202.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap DHHA1 PF02272.19 gi|433592964|ref|YP_007282460.1| - 1.1e-19 71.2 1.0 2.6e-19 70.0 1.0 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|433592964|ref|YP_007282460.1| - 0.045 14.0 0.3 0.1 12.9 0.3 1.6 1 0 0 1 1 1 0 DHH family Arm-DNA-bind_3 PF13356.6 gi|433592964|ref|YP_007282460.1| - 0.28 11.6 1.4 0.53 10.7 0.1 2.2 2 0 0 2 2 2 0 Arm DNA-binding domain PHP_C PF13263.6 gi|433592965|ref|YP_007282461.1| - 1.8e-22 78.8 0.1 8.3e-22 76.7 0.1 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|433592965|ref|YP_007282461.1| - 4.8e-05 23.7 0.0 7.7e-05 23.1 0.0 1.2 1 1 0 1 1 1 1 PHP domain SSTK-IP PF15836.5 gi|433592966|ref|YP_007282462.1| - 0.051 13.7 0.1 0.074 13.2 0.1 1.2 1 0 0 1 1 1 0 SSTK-interacting protein, TSSK6-activating co-chaperone protein KASH_CCD PF14662.6 gi|433592967|ref|YP_007282463.1| - 0.004 17.0 2.9 0.006 16.4 2.9 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH FapA PF03961.13 gi|433592967|ref|YP_007282463.1| - 0.24 10.0 0.1 0.29 9.7 0.1 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF1045 PF06299.12 gi|433592967|ref|YP_007282463.1| - 0.27 11.2 3.0 0.16 11.9 0.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1045) Prok_Ub PF14454.6 gi|433592969|ref|YP_007282465.1| - 0.15 11.7 0.7 0.79 9.4 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic Ubiquitin NifU PF01106.17 gi|433592970|ref|YP_007282466.1| - 4e-14 52.5 0.0 6.7e-14 51.8 0.0 1.5 1 0 0 1 1 1 1 NifU-like domain ApbA_C PF08546.11 gi|433592971|ref|YP_007282467.1| - 6e-38 129.9 0.6 9.3e-38 129.2 0.6 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|433592971|ref|YP_007282467.1| - 2e-29 102.2 0.1 3.1e-29 101.6 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|433592971|ref|YP_007282467.1| - 0.052 14.1 0.1 2.3 8.9 0.2 3.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|433592971|ref|YP_007282467.1| - 0.068 13.4 0.5 0.2 11.9 0.1 2.1 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|433592971|ref|YP_007282467.1| - 0.17 12.2 2.2 1.5 9.1 0.0 3.0 3 1 0 3 3 3 0 TrkA-N domain HypA PF01155.19 gi|433592972|ref|YP_007282468.1| - 0.0009 19.2 0.1 0.0014 18.7 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|433592972|ref|YP_007282468.1| - 0.0041 16.8 2.7 0.079 12.7 0.0 2.3 2 0 0 2 2 2 1 Rubredoxin metal binding domain HalOD2 PF18547.1 gi|433592972|ref|YP_007282468.1| - 0.027 14.4 6.0 2.8 7.9 0.5 3.1 2 1 1 3 3 3 0 Halobacterial output domain 2 DNA_RNApol_7kD PF03604.13 gi|433592972|ref|YP_007282468.1| - 0.028 14.1 1.3 0.048 13.4 1.3 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit NRDD PF13597.6 gi|433592972|ref|YP_007282468.1| - 0.047 12.5 0.4 0.067 12.0 0.4 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn_Tnp_IS1595 PF12760.7 gi|433592972|ref|YP_007282468.1| - 0.056 13.4 0.3 7.5 6.6 0.0 2.8 3 0 0 3 3 3 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433592972|ref|YP_007282468.1| - 0.23 11.6 3.1 0.47 10.6 2.9 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Abhydrolase_6 PF12697.7 gi|433592974|ref|YP_007282470.1| - 2.9e-23 83.7 4.4 3.4e-23 83.4 4.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|433592974|ref|YP_007282470.1| - 2.6e-22 79.7 0.4 6.5e-21 75.1 0.4 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|433592974|ref|YP_007282470.1| - 5.8e-16 58.5 0.0 8.7e-09 35.0 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|433592974|ref|YP_007282470.1| - 1.4e-05 25.1 0.0 2.7e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Ndr PF03096.14 gi|433592974|ref|YP_007282470.1| - 7.8e-05 21.5 0.0 0.00016 20.5 0.0 1.5 1 1 0 1 1 1 1 Ndr family Abhydrolase_2 PF02230.16 gi|433592974|ref|YP_007282470.1| - 8.8e-05 22.4 0.0 0.38 10.5 0.0 3.0 3 0 0 3 3 3 2 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.7 gi|433592974|ref|YP_007282470.1| - 0.00011 22.0 0.0 0.058 13.2 0.0 2.4 2 1 0 2 2 2 2 Alpha/beta hydrolase family FSH1 PF03959.13 gi|433592974|ref|YP_007282470.1| - 0.0014 18.3 0.0 0.0028 17.3 0.0 1.4 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Esterase PF00756.20 gi|433592974|ref|YP_007282470.1| - 0.013 15.2 0.3 0.034 13.8 0.3 1.7 1 1 0 1 1 1 0 Putative esterase Thioesterase PF00975.20 gi|433592974|ref|YP_007282470.1| - 0.016 15.4 0.0 0.037 14.1 0.0 1.8 1 1 0 1 1 1 0 Thioesterase domain Peptidase_S9 PF00326.21 gi|433592974|ref|YP_007282470.1| - 0.023 14.2 0.0 0.26 10.8 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family Ser_hydrolase PF06821.13 gi|433592974|ref|YP_007282470.1| - 0.043 13.7 0.0 0.23 11.3 0.0 2.0 1 1 0 1 1 1 0 Serine hydrolase Abhydrolase_3 PF07859.13 gi|433592974|ref|YP_007282470.1| - 0.17 11.7 0.1 0.51 10.1 0.0 1.9 1 1 0 2 2 2 0 alpha/beta hydrolase fold PolC_DP2 PF03833.13 gi|433592975|ref|YP_007282471.1| - 0 1313.0 0.0 0 1311.6 0.0 1.6 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 LAGLIDADG_3 PF14528.6 gi|433592975|ref|YP_007282471.1| - 2.1e-12 47.2 0.0 1.8e-10 41.0 0.0 3.2 3 0 0 3 3 3 1 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|433592975|ref|YP_007282471.1| - 1.8e-11 44.2 0.0 3.3e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Intein splicing domain Phage_CI_repr PF07022.13 gi|433592975|ref|YP_007282471.1| - 0.042 13.9 0.0 0.21 11.7 0.0 2.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HypA PF01155.19 gi|433592975|ref|YP_007282471.1| - 0.15 12.1 19.8 2.2 8.4 4.0 3.5 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Hint PF01079.20 gi|433592975|ref|YP_007282471.1| - 0.19 11.2 0.0 0.36 10.3 0.0 1.4 1 0 0 1 1 1 0 Hint module DZR PF12773.7 gi|433592975|ref|YP_007282471.1| - 0.25 11.4 19.7 9.3 6.4 0.4 3.4 2 1 0 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|433592975|ref|YP_007282471.1| - 0.27 11.3 17.0 3.6 7.7 3.2 3.2 2 1 1 3 3 3 0 zinc-ribbons Sigma70_ner PF04546.13 gi|433592975|ref|YP_007282471.1| - 0.86 9.5 8.6 2.1 8.2 8.6 1.6 1 0 0 1 1 1 0 Sigma-70, non-essential region zf-HIT PF04438.16 gi|433592975|ref|YP_007282471.1| - 3.8 7.4 9.3 5.2 7.0 3.2 2.7 2 0 0 2 2 2 0 HIT zinc finger DUF296 PF03479.15 gi|433592976|ref|YP_007282472.1| - 5.3e-18 65.4 0.0 6.4e-18 65.1 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain OTU PF02338.19 gi|433592976|ref|YP_007282472.1| - 0.11 12.9 0.2 0.51 10.8 0.0 1.9 2 0 0 2 2 2 0 OTU-like cysteine protease SBP_bac_5 PF00496.22 gi|433592977|ref|YP_007282473.1| - 2.8e-67 227.3 0.8 3.3e-67 227.1 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle K_channel_TID PF07941.11 gi|433592977|ref|YP_007282473.1| - 0.036 14.5 1.5 0.075 13.5 1.5 1.5 1 0 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain TAT_signal PF10518.9 gi|433592977|ref|YP_007282473.1| - 0.17 11.8 6.9 0.28 11.1 6.9 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|433592978|ref|YP_007282474.1| - 2e-40 138.5 7.6 2e-40 138.5 7.6 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PqqD PF05402.12 gi|433592978|ref|YP_007282474.1| - 0.16 12.3 0.0 0.5 10.7 0.0 1.8 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) BPD_transp_1 PF00528.22 gi|433592979|ref|YP_007282475.1| - 1.4e-31 109.7 9.7 1.4e-31 109.7 9.7 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|433592979|ref|YP_007282475.1| - 0.091 12.8 0.4 0.091 12.8 0.4 2.9 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|433592980|ref|YP_007282476.1| - 1.4e-26 93.6 0.0 2.3e-26 92.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|433592980|ref|YP_007282476.1| - 1.3e-19 70.4 0.4 2.5e-19 69.6 0.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|433592980|ref|YP_007282476.1| - 6.6e-06 26.1 0.1 0.00019 21.4 0.0 2.0 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|433592981|ref|YP_007282477.1| - 1.5e-32 113.0 0.0 2.1e-32 112.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|433592981|ref|YP_007282477.1| - 3.4e-16 59.5 0.1 8.7e-16 58.2 0.1 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|433592981|ref|YP_007282477.1| - 9.5e-05 21.9 0.0 0.00013 21.4 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|433592981|ref|YP_007282477.1| - 0.00086 19.7 0.1 0.0029 18.0 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|433592981|ref|YP_007282477.1| - 0.0015 18.4 0.1 1.9 8.2 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|433592981|ref|YP_007282477.1| - 0.0089 16.3 0.2 0.028 14.7 0.2 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|433592981|ref|YP_007282477.1| - 0.011 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|433592981|ref|YP_007282477.1| - 0.019 14.7 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|433592981|ref|YP_007282477.1| - 0.043 14.3 0.0 0.18 12.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|433592981|ref|YP_007282477.1| - 0.047 13.7 0.0 0.08 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|433592981|ref|YP_007282477.1| - 0.17 12.3 0.0 0.31 11.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|433592981|ref|YP_007282477.1| - 0.21 10.7 0.0 0.41 9.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain PLDc_N PF13396.6 gi|433592982|ref|YP_007282478.1| - 0.0012 18.7 0.8 0.0018 18.1 0.8 1.3 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal Vps55 PF04133.14 gi|433592982|ref|YP_007282478.1| - 0.063 13.2 0.2 0.099 12.6 0.2 1.3 1 1 0 1 1 1 0 Vacuolar protein sorting 55 Lig_chan PF00060.26 gi|433592982|ref|YP_007282478.1| - 0.094 12.6 0.2 0.15 11.9 0.0 1.4 2 0 0 2 2 2 0 Ligand-gated ion channel DDE_Tnp_ISAZ013 PF07592.11 gi|433592983|ref|YP_007282479.1| - 0.12 11.3 0.0 0.12 11.3 0.0 1.0 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain BsuPI PF12690.7 gi|433592984|ref|YP_007282480.1| - 0.057 13.5 0.0 0.87 9.7 0.0 2.2 1 1 0 1 1 1 0 Intracellular proteinase inhibitor CBS PF00571.28 gi|433592986|ref|YP_007282482.1| - 4.5e-33 113.5 8.8 3.7e-11 43.3 0.3 4.1 4 0 0 4 4 4 4 CBS domain HGTP_anticodon PF03129.20 gi|433592987|ref|YP_007282483.1| - 2.3e-23 82.2 0.1 5.3e-23 81.0 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|433592987|ref|YP_007282483.1| - 1.2e-08 35.2 0.0 1.4e-07 31.6 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-ribbon_3 PF13248.6 gi|433592987|ref|YP_007282483.1| - 0.002 17.5 0.3 2 7.9 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|433592987|ref|YP_007282483.1| - 0.015 15.5 0.1 0.48 10.7 0.0 2.8 3 0 0 3 3 3 0 Ribosomal L32p protein family Zn-ribbon_8 PF09723.10 gi|433592987|ref|YP_007282483.1| - 0.052 13.7 0.4 9.8 6.4 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|433592987|ref|YP_007282483.1| - 0.11 12.3 1.5 12 5.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|433592987|ref|YP_007282483.1| - 0.18 11.5 1.7 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|433592987|ref|YP_007282483.1| - 0.45 10.5 1.5 6.7 6.7 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|433592987|ref|YP_007282483.1| - 1 8.9 7.1 1 9.0 2.2 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding MFS_1 PF07690.16 gi|433592989|ref|YP_007282485.1| - 5e-39 134.2 40.8 5e-39 134.2 40.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|433592989|ref|YP_007282485.1| - 6.2e-11 41.8 10.2 7.9e-08 31.5 6.0 2.1 2 0 0 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 gi|433592989|ref|YP_007282485.1| - 8.1e-05 21.6 4.4 8.1e-05 21.6 4.4 2.0 2 1 0 2 2 2 1 LacY proton/sugar symporter DUF4781 PF16013.5 gi|433592989|ref|YP_007282485.1| - 0.086 11.6 3.8 0.17 10.7 3.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) TspO_MBR PF03073.15 gi|433592990|ref|YP_007282486.1| - 9.2e-42 142.3 21.1 1.1e-41 142.0 21.1 1.0 1 0 0 1 1 1 1 TspO/MBR family CcmF_C PF16327.5 gi|433592990|ref|YP_007282486.1| - 0.034 13.4 7.4 0.045 13.0 7.4 1.2 1 0 0 1 1 1 0 Cytochrome c-type biogenesis protein CcmF C-terminal Tetraspanin PF00335.20 gi|433592990|ref|YP_007282486.1| - 0.37 10.5 5.8 0.63 9.7 5.8 1.3 1 0 0 1 1 1 0 Tetraspanin family LMBR1 PF04791.16 gi|433592990|ref|YP_007282486.1| - 6.3 5.6 9.2 6.4 5.6 2.7 2.0 2 0 0 2 2 2 0 LMBR1-like membrane protein Helicase_C PF00271.31 gi|433592991|ref|YP_007282487.1| - 9.1e-23 80.7 0.0 4.7e-21 75.2 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|433592991|ref|YP_007282487.1| - 9.6e-23 81.1 0.0 2.3e-22 79.9 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain DEAD PF00270.29 gi|433592991|ref|YP_007282487.1| - 2.6e-15 56.7 0.0 7.3e-15 55.2 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|433592991|ref|YP_007282487.1| - 6.4e-12 45.8 0.0 1.6e-11 44.5 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|433592991|ref|YP_007282487.1| - 2.7e-09 37.5 0.6 1.7e-08 34.9 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|433592991|ref|YP_007282487.1| - 5.3e-09 36.1 0.4 3e-08 33.6 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|433592991|ref|YP_007282487.1| - 3.8e-06 26.5 0.3 0.00063 19.5 0.1 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|433592991|ref|YP_007282487.1| - 0.018 15.6 0.0 0.089 13.4 0.0 2.3 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold MEDS PF14417.6 gi|433592991|ref|YP_007282487.1| - 0.02 14.7 0.5 6.3 6.6 0.2 2.9 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Helicase_C_2 PF13307.6 gi|433592991|ref|YP_007282487.1| - 0.023 14.9 0.3 0.16 12.1 0.0 2.4 1 1 0 2 2 2 0 Helicase C-terminal domain DUF4618 PF15397.6 gi|433592991|ref|YP_007282487.1| - 0.05 13.0 4.9 0.036 13.5 1.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) DUF4407 PF14362.6 gi|433592991|ref|YP_007282487.1| - 0.073 12.4 6.0 0.75 9.1 1.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) RsbRD_N PF14361.6 gi|433592991|ref|YP_007282487.1| - 0.16 12.7 2.4 0.27 11.9 0.3 2.5 2 0 0 2 2 1 0 RsbT co-antagonist protein rsbRD N-terminal domain TolA_bind_tri PF16331.5 gi|433592991|ref|YP_007282487.1| - 2.4 8.3 7.5 3.7 7.7 0.6 2.6 2 0 0 2 2 2 0 TolA binding protein trimerisation PAP2_3 PF14378.6 gi|433592992|ref|YP_007282488.1| - 1.3e-19 70.6 13.4 1.3e-19 70.6 13.4 1.5 2 0 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|433592992|ref|YP_007282488.1| - 6e-12 45.5 6.2 6e-12 45.5 6.2 2.2 2 1 0 2 2 2 1 PAP2 superfamily NS3_envE PF02723.14 gi|433592992|ref|YP_007282488.1| - 0.28 11.3 2.7 0.71 10.0 2.7 1.7 1 0 0 1 1 1 0 Non-structural protein NS3/Small envelope protein E Auto_anti-p27 PF06677.12 gi|433592993|ref|YP_007282489.1| - 1.4e-13 50.7 1.0 2.1e-13 50.2 1.0 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|433592993|ref|YP_007282489.1| - 0.008 16.2 1.3 0.017 15.2 1.3 1.5 1 0 0 1 1 1 1 Double zinc ribbon SOG2 PF10428.9 gi|433592993|ref|YP_007282489.1| - 0.28 10.3 10.3 0.19 10.9 9.0 1.4 1 1 1 2 2 2 0 RAM signalling pathway protein LDcluster4 PF18306.1 gi|433592994|ref|YP_007282490.1| - 1e-37 129.2 4.7 1.1e-37 129.0 4.7 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|433592994|ref|YP_007282490.1| - 1.7e-06 28.2 0.1 2.8e-06 27.5 0.1 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|433592994|ref|YP_007282490.1| - 4.8e-05 22.7 3.1 7.4e-05 22.1 3.1 1.3 1 0 0 1 1 1 1 DNA recombination-mediator protein A PALP PF00291.25 gi|433592994|ref|YP_007282490.1| - 0.37 10.2 5.7 0.1 12.0 1.6 1.8 1 1 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme Ldh_1_N PF00056.23 gi|433592995|ref|YP_007282491.1| - 1.2e-38 132.3 0.5 1.7e-38 131.9 0.5 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|433592995|ref|YP_007282491.1| - 6.2e-30 104.3 0.0 9.7e-30 103.7 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Fer4_15 PF13459.6 gi|433592996|ref|YP_007282492.1| - 1.4e-21 77.0 4.5 1.7e-21 76.7 4.5 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|433592996|ref|YP_007282492.1| - 4.3e-07 30.4 0.9 8.3e-07 29.5 0.9 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|433592996|ref|YP_007282492.1| - 0.026 14.3 1.5 2.3 8.2 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.11 gi|433592996|ref|YP_007282492.1| - 0.061 13.4 0.4 0.33 11.1 0.4 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Methyltransf_25 PF13649.6 gi|433592997|ref|YP_007282493.1| - 4e-11 43.5 0.1 1.1e-10 42.1 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433592997|ref|YP_007282493.1| - 5.7e-10 39.7 0.2 1e-09 38.9 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433592997|ref|YP_007282493.1| - 6e-07 29.4 0.0 8.1e-07 29.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|433592997|ref|YP_007282493.1| - 1e-06 28.6 0.0 1.4e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_23 PF13489.6 gi|433592997|ref|YP_007282493.1| - 3.7e-05 23.6 0.0 5.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|433592997|ref|YP_007282493.1| - 0.00011 22.8 0.0 0.00019 22.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|433592997|ref|YP_007282493.1| - 0.00029 20.5 0.0 0.00043 19.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Pox_MCEL PF03291.16 gi|433592997|ref|YP_007282493.1| - 0.0087 15.2 0.0 0.012 14.7 0.0 1.1 1 0 0 1 1 1 1 mRNA capping enzyme CMAS PF02353.20 gi|433592997|ref|YP_007282493.1| - 0.01 15.1 0.0 0.015 14.6 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|433592997|ref|YP_007282493.1| - 0.058 12.9 0.0 0.093 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|433592997|ref|YP_007282493.1| - 0.081 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PHO4 PF01384.20 gi|433592998|ref|YP_007282494.1| - 6.3e-40 137.2 29.0 9.8e-40 136.6 29.0 1.3 1 0 0 1 1 1 1 Phosphate transporter family Usp PF00582.26 gi|433592999|ref|YP_007282495.1| - 8.9e-12 45.7 0.3 1.1e-11 45.5 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Trp_syntA PF00290.20 gi|433592999|ref|YP_007282495.1| - 0.096 11.5 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Tryptophan synthase alpha chain ABC2_membrane_2 PF12679.7 gi|433593000|ref|YP_007282496.1| - 0.2 10.9 5.8 0.25 10.6 5.8 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4173 PF13777.6 gi|433593000|ref|YP_007282496.1| - 0.21 11.0 0.0 0.21 11.0 0.0 2.3 2 1 0 3 3 3 0 Domain of unknown function (DUF4173) PetG PF02529.15 gi|433593000|ref|YP_007282496.1| - 0.79 9.6 3.3 1.3 8.9 0.3 2.2 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 CbtB PF09489.10 gi|433593000|ref|YP_007282496.1| - 1.8 8.8 6.1 2.7 8.2 0.0 3.0 3 0 0 3 3 3 0 Probable cobalt transporter subunit (CbtB) DEAD PF00270.29 gi|433593001|ref|YP_007282497.1| - 2.8e-22 79.3 0.0 4.6e-22 78.6 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|433593001|ref|YP_007282497.1| - 1.5e-08 34.9 0.0 2.8e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|433593001|ref|YP_007282497.1| - 7.5e-08 32.9 0.3 2.5e-07 31.2 0.3 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|433593001|ref|YP_007282497.1| - 2.1e-07 31.2 0.0 2.4e-06 27.8 0.0 2.6 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|433593001|ref|YP_007282497.1| - 0.0022 17.8 0.0 0.006 16.4 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|433593001|ref|YP_007282497.1| - 0.03 14.2 0.0 1.2 9.1 0.0 3.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif CGI-121 PF08617.10 gi|433593002|ref|YP_007282498.1| - 2.5e-06 27.7 0.0 2.9e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 PGDYG PF14083.6 gi|433593002|ref|YP_007282498.1| - 0.028 14.7 0.0 0.044 14.0 0.0 1.4 1 0 0 1 1 1 0 PGDYG protein Oxidored_FMN PF00724.20 gi|433593003|ref|YP_007282499.1| - 3.9e-37 128.3 0.0 3.2e-34 118.7 0.0 2.1 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.21 gi|433593003|ref|YP_007282499.1| - 0.078 12.4 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein Dus PF01207.17 gi|433593003|ref|YP_007282499.1| - 0.16 11.0 0.0 0.34 10.0 0.0 1.5 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Rhodanese PF00581.20 gi|433593004|ref|YP_007282500.1| - 1.2e-06 29.0 0.0 2e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Rhodanese-like domain TAT_signal PF10518.9 gi|433593004|ref|YP_007282500.1| - 0.075 12.9 1.7 0.14 12.1 1.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HNH PF01844.23 gi|433593005|ref|YP_007282501.1| - 0.66 10.2 8.7 6.6 7.0 8.7 2.2 1 1 0 1 1 1 0 HNH endonuclease IMP_cyclohyd PF07826.11 gi|433593006|ref|YP_007282502.1| - 1.5e-62 210.6 0.0 1.7e-62 210.4 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein Metallophos_2 PF12850.7 gi|433593007|ref|YP_007282503.1| - 3.3e-32 112.0 0.1 4.1e-32 111.7 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|433593007|ref|YP_007282503.1| - 7.5e-12 46.2 0.8 1.5e-10 42.0 0.8 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|433593007|ref|YP_007282503.1| - 0.0077 15.6 0.1 0.017 14.5 0.1 1.5 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Hexapep PF00132.24 gi|433593008|ref|YP_007282504.1| - 1.9e-14 52.7 2.0 2.5e-07 30.1 0.0 3.1 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|433593008|ref|YP_007282504.1| - 8.4e-07 28.6 5.8 6.5e-06 25.8 0.6 3.1 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|433593008|ref|YP_007282504.1| - 7.8e-05 23.0 0.0 0.00013 22.3 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal PGM_PMM_I PF02878.16 gi|433593009|ref|YP_007282505.1| - 7.2e-39 132.6 0.0 1.5e-38 131.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|433593009|ref|YP_007282505.1| - 1.5e-22 79.9 0.0 2.7e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|433593009|ref|YP_007282505.1| - 3.8e-22 78.9 0.2 7.8e-22 77.8 0.2 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|433593009|ref|YP_007282505.1| - 3e-16 59.4 0.2 9.3e-16 57.8 0.2 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Gluconate_2-dh3 PF13618.6 gi|433593009|ref|YP_007282505.1| - 0.082 13.1 0.0 0.24 11.7 0.0 1.7 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 GIY-YIG PF01541.24 gi|433593011|ref|YP_007282507.1| - 2.2e-17 63.1 0.1 2.5e-17 62.9 0.1 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain Lar_restr_allev PF14354.6 gi|433593012|ref|YP_007282508.1| - 0.012 15.9 1.5 0.014 15.8 1.5 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|433593012|ref|YP_007282508.1| - 0.013 15.5 0.5 0.017 15.2 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF3268 PF11672.8 gi|433593012|ref|YP_007282508.1| - 0.024 15.0 0.2 0.024 15.0 0.2 1.0 1 0 0 1 1 1 0 zinc-finger-containing domain Zn-ribbon_8 PF09723.10 gi|433593012|ref|YP_007282508.1| - 0.27 11.4 3.0 0.52 10.5 2.7 1.6 1 1 0 1 1 1 0 Zinc ribbon domain AIRC PF00731.20 gi|433593013|ref|YP_007282509.1| - 1.2e-15 57.4 3.4 2.1e-15 56.6 3.4 1.4 1 0 0 1 1 1 1 AIR carboxylase zf-HC2 PF13490.6 gi|433593013|ref|YP_007282509.1| - 0.1 12.9 0.8 0.26 11.6 0.8 1.8 1 0 0 1 1 1 0 Putative zinc-finger DUF1931 PF09123.11 gi|433593014|ref|YP_007282510.1| - 2.3e-05 24.5 1.5 2.6e-05 24.4 1.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|433593014|ref|YP_007282510.1| - 0.0012 19.1 0.1 0.0018 18.5 0.1 1.5 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|433593014|ref|YP_007282510.1| - 0.064 13.6 0.0 0.064 13.6 0.0 1.2 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 Glutaredoxin PF00462.24 gi|433593014|ref|YP_007282510.1| - 0.19 12.0 0.4 0.23 11.7 0.4 1.1 1 0 0 1 1 1 0 Glutaredoxin Rib_5-P_isom_A PF06026.14 gi|433593017|ref|YP_007282513.1| - 2.9e-64 215.8 0.1 3.5e-64 215.6 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|433593017|ref|YP_007282513.1| - 1.3e-05 25.2 0.2 0.0044 17.0 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain ABC2_membrane_2 PF12679.7 gi|433593018|ref|YP_007282514.1| - 2.2e-43 148.6 11.2 8.4e-43 146.7 11.2 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|433593018|ref|YP_007282514.1| - 1.3e-07 31.0 13.1 1.3e-07 31.0 13.1 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|433593018|ref|YP_007282514.1| - 1.2e-06 28.3 4.8 2.2e-06 27.4 4.8 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|433593018|ref|YP_007282514.1| - 3.6e-06 27.0 6.8 2e-05 24.6 6.7 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|433593018|ref|YP_007282514.1| - 8.8e-06 25.3 9.6 8.8e-06 25.3 9.6 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC_tran PF00005.27 gi|433593019|ref|YP_007282515.1| - 9.3e-26 91.0 0.0 1.4e-25 90.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433593019|ref|YP_007282515.1| - 1.4e-12 48.1 0.0 1.8e-07 31.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|433593019|ref|YP_007282515.1| - 2.7e-07 31.2 0.0 7.8e-07 29.7 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|433593019|ref|YP_007282515.1| - 0.0021 17.6 0.0 0.24 10.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|433593019|ref|YP_007282515.1| - 0.0026 17.5 0.0 0.0052 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|433593019|ref|YP_007282515.1| - 0.0032 17.4 0.0 0.0055 16.6 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|433593019|ref|YP_007282515.1| - 0.015 15.7 0.1 0.031 14.7 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|433593019|ref|YP_007282515.1| - 0.027 14.2 0.0 0.8 9.4 0.0 2.4 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|433593019|ref|YP_007282515.1| - 0.032 14.0 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|433593019|ref|YP_007282515.1| - 0.045 14.3 0.0 0.063 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|433593019|ref|YP_007282515.1| - 0.048 13.4 0.0 0.087 12.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein CbiA PF01656.23 gi|433593019|ref|YP_007282515.1| - 0.061 13.4 0.0 0.081 13.0 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_27 PF13514.6 gi|433593019|ref|YP_007282515.1| - 0.15 11.6 0.0 0.78 9.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF2407_C PF13373.6 gi|433593020|ref|YP_007282516.1| - 0.0087 16.2 0.2 0.013 15.7 0.2 1.3 1 1 0 1 1 1 1 DUF2407 C-terminal domain LapA_dom PF06305.11 gi|433593020|ref|YP_007282516.1| - 0.0099 15.7 0.0 0.0099 15.7 0.0 2.1 1 1 1 2 2 2 1 Lipopolysaccharide assembly protein A domain DUF1761 PF08570.10 gi|433593020|ref|YP_007282516.1| - 0.015 15.6 0.7 0.019 15.2 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1761) DUF2613 PF11021.8 gi|433593020|ref|YP_007282516.1| - 0.017 15.2 1.2 0.017 15.2 1.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2613) DUF1129 PF06570.11 gi|433593020|ref|YP_007282516.1| - 0.032 13.7 0.6 0.042 13.3 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) FixQ PF05545.11 gi|433593020|ref|YP_007282516.1| - 0.05 13.6 0.1 0.05 13.6 0.1 2.3 1 1 1 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ EI24 PF07264.11 gi|433593020|ref|YP_007282516.1| - 0.075 13.3 1.2 0.097 12.9 1.2 1.1 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Chordopox_A13L PF05961.11 gi|433593020|ref|YP_007282516.1| - 0.083 13.1 0.2 0.91 9.8 0.1 2.0 2 0 0 2 2 2 0 Chordopoxvirus A13L protein RDD PF06271.12 gi|433593020|ref|YP_007282516.1| - 0.13 12.4 3.5 0.17 12.1 3.5 1.1 1 0 0 1 1 1 0 RDD family Saf_2TM PF18303.1 gi|433593020|ref|YP_007282516.1| - 0.16 11.6 0.4 0.2 11.2 0.1 1.4 1 1 0 1 1 1 0 SAVED-fused 2TM effector domain DUF2207 PF09972.9 gi|433593020|ref|YP_007282516.1| - 0.25 10.1 1.1 0.3 9.8 1.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Yip1 PF04893.17 gi|433593020|ref|YP_007282516.1| - 0.34 10.6 7.7 0.99 9.1 8.0 1.5 1 1 0 1 1 1 0 Yip1 domain Syndecan PF01034.20 gi|433593020|ref|YP_007282516.1| - 1.4 8.9 7.7 8.9 6.3 2.9 2.1 1 1 1 2 2 2 0 Syndecan domain ABC_tran PF00005.27 gi|433593021|ref|YP_007282517.1| - 2.9e-32 112.0 0.0 3.9e-32 111.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|433593021|ref|YP_007282517.1| - 4.5e-08 32.8 0.0 0.00045 19.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|433593021|ref|YP_007282517.1| - 3e-06 27.3 0.2 0.021 14.6 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|433593021|ref|YP_007282517.1| - 3.1e-05 23.6 0.1 6.2e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|433593021|ref|YP_007282517.1| - 0.0014 19.1 0.4 0.0033 17.8 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|433593021|ref|YP_007282517.1| - 0.0015 18.5 0.1 0.0038 17.1 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|433593021|ref|YP_007282517.1| - 0.0087 16.3 0.6 0.085 13.1 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|433593021|ref|YP_007282517.1| - 0.0088 15.6 1.3 0.11 12.1 1.3 2.2 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|433593021|ref|YP_007282517.1| - 0.01 15.9 0.1 0.33 11.0 0.0 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|433593021|ref|YP_007282517.1| - 0.035 14.6 0.0 0.061 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|433593021|ref|YP_007282517.1| - 0.068 12.9 0.1 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF3987 PF13148.6 gi|433593021|ref|YP_007282517.1| - 0.078 12.0 0.0 0.16 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_33 PF13671.6 gi|433593021|ref|YP_007282517.1| - 0.27 11.4 1.4 0.85 9.8 1.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|433593021|ref|YP_007282517.1| - 0.32 10.7 0.7 0.67 9.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain MacB_PCD PF12704.7 gi|433593022|ref|YP_007282518.1| - 7.1e-24 85.2 2.9 7.1e-24 85.2 2.9 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|433593022|ref|YP_007282518.1| - 2e-15 57.0 0.5 2e-15 57.0 0.5 3.0 3 0 0 3 3 3 1 FtsX-like permease family DUF883 PF05957.13 gi|433593022|ref|YP_007282518.1| - 8.6 7.0 10.9 19 5.9 2.2 3.6 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF5518 PF17647.1 gi|433593023|ref|YP_007282519.1| - 4.5e-16 59.1 33.8 5.3e-16 58.8 33.8 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Rick_17kDa_Anti PF05433.15 gi|433593023|ref|YP_007282519.1| - 6.4e-07 29.1 5.6 0.31 10.9 2.6 3.8 3 0 0 3 3 3 3 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 gi|433593023|ref|YP_007282519.1| - 0.021 14.5 10.5 0.15 11.8 3.0 3.1 3 0 0 3 3 3 0 YMGG-like Gly-zipper PT-VENN PF04829.13 gi|433593023|ref|YP_007282519.1| - 0.41 10.7 2.4 2.7 8.1 0.3 2.5 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif Gly-zipper_Omp PF13488.6 gi|433593023|ref|YP_007282519.1| - 0.51 10.4 13.8 0.56 10.3 3.2 3.5 4 0 0 4 4 4 0 Glycine zipper DUF2162 PF09930.9 gi|433593024|ref|YP_007282520.1| - 0.036 13.5 1.0 0.04 13.3 1.0 1.2 1 0 0 1 1 1 0 Predicted transporter (DUF2162) Syndecan PF01034.20 gi|433593024|ref|YP_007282520.1| - 0.14 12.1 2.4 1.7 8.6 0.1 2.1 2 0 0 2 2 2 0 Syndecan domain AtpR PF12966.7 gi|433593024|ref|YP_007282520.1| - 0.16 12.5 2.0 0.22 12.0 0.2 1.9 2 0 0 2 2 2 0 N-ATPase, AtpR subunit zf-trcl PF13451.6 gi|433593025|ref|YP_007282521.1| - 3.9 7.4 4.4 6.3 6.8 4.4 1.3 1 0 0 1 1 1 0 Probable zinc-ribbon domain LapA_dom PF06305.11 gi|433593026|ref|YP_007282522.1| - 0.046 13.5 3.9 0.37 10.6 0.5 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Phage_holin_7_1 PF16081.5 gi|433593026|ref|YP_007282522.1| - 0.053 13.7 0.4 0.059 13.5 0.4 1.1 1 0 0 1 1 1 0 Mycobacterial 2 TMS Phage Holin (M2 Hol) Family HTH_20 PF12840.7 gi|433593027|ref|YP_007282523.1| - 9.8e-06 25.5 2.2 1.4e-05 25.0 0.8 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433593027|ref|YP_007282523.1| - 3e-05 23.7 0.8 6.5e-05 22.7 0.8 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|433593027|ref|YP_007282523.1| - 6.2e-05 22.8 0.2 0.00012 21.9 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|433593027|ref|YP_007282523.1| - 6.6e-05 22.8 0.5 0.00012 21.9 0.5 1.3 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|433593027|ref|YP_007282523.1| - 0.00012 22.0 1.3 0.00024 21.0 1.3 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|433593027|ref|YP_007282523.1| - 0.00013 21.8 1.2 0.0002 21.2 0.5 1.6 2 0 0 2 2 1 1 MarR family MarR PF01047.22 gi|433593027|ref|YP_007282523.1| - 0.00014 21.7 0.6 0.00029 20.7 0.6 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|433593027|ref|YP_007282523.1| - 0.00015 21.5 1.4 0.00034 20.3 1.4 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.6 gi|433593027|ref|YP_007282523.1| - 0.00021 21.2 0.0 0.00036 20.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|433593027|ref|YP_007282523.1| - 0.001 18.6 0.5 0.0016 17.9 0.5 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|433593027|ref|YP_007282523.1| - 0.0016 18.1 0.1 0.0031 17.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|433593027|ref|YP_007282523.1| - 0.0055 16.6 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|433593027|ref|YP_007282523.1| - 0.0092 16.1 1.9 0.012 15.7 0.5 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|433593027|ref|YP_007282523.1| - 0.0096 15.9 0.1 0.021 14.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|433593027|ref|YP_007282523.1| - 0.013 15.8 0.0 0.026 14.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_29 PF13551.6 gi|433593027|ref|YP_007282523.1| - 0.014 15.4 0.2 0.032 14.2 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_3 PF01381.22 gi|433593027|ref|YP_007282523.1| - 0.039 14.0 0.5 0.075 13.1 0.5 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_DeoR PF08220.12 gi|433593027|ref|YP_007282523.1| - 0.046 13.5 0.6 0.1 12.4 0.6 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF505 PF04458.12 gi|433593027|ref|YP_007282523.1| - 0.095 11.1 0.1 0.11 10.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_8 PF02954.19 gi|433593027|ref|YP_007282523.1| - 0.1 12.4 1.0 0.28 11.0 1.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HxlR PF01638.17 gi|433593027|ref|YP_007282523.1| - 0.21 11.5 1.4 0.71 9.8 1.0 2.1 2 1 0 2 2 2 0 HxlR-like helix-turn-helix Siva PF05458.12 gi|433593028|ref|YP_007282524.1| - 1.7 8.3 12.5 0.046 13.4 3.4 2.5 1 1 1 3 3 3 0 Cd27 binding protein (Siva) AI-2E_transport PF01594.16 gi|433593029|ref|YP_007282525.1| - 1.1e-31 110.2 32.5 3.8e-31 108.4 32.5 1.7 1 1 0 1 1 1 1 AI-2E family transporter SBP_bac_6 PF13343.6 gi|433593030|ref|YP_007282526.1| - 1e-26 93.9 0.0 1.5e-26 93.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|433593030|ref|YP_007282526.1| - 3.8e-18 66.3 0.1 4.9e-18 65.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|433593030|ref|YP_007282526.1| - 1.1e-08 35.4 1.1 1.6e-08 34.9 1.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|433593030|ref|YP_007282526.1| - 0.01 15.6 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|433593031|ref|YP_007282527.1| - 2e-29 102.6 41.6 1.4e-17 64.0 13.0 3.1 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF3464 PF11947.8 gi|433593031|ref|YP_007282527.1| - 1.3 8.8 3.4 4.7 6.9 3.4 2.0 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 ABC_tran PF00005.27 gi|433593032|ref|YP_007282528.1| - 9.2e-33 113.7 0.0 1.6e-32 112.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433593032|ref|YP_007282528.1| - 3.2e-08 33.7 0.0 0.00088 19.2 0.0 2.4 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|433593032|ref|YP_007282528.1| - 5.3e-07 29.7 2.7 2.4e-06 27.6 0.4 3.0 2 1 0 2 2 2 1 TOBE domain AAA_22 PF13401.6 gi|433593032|ref|YP_007282528.1| - 0.00021 21.5 0.1 0.0011 19.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|433593032|ref|YP_007282528.1| - 0.0009 18.7 0.0 0.069 12.6 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|433593032|ref|YP_007282528.1| - 0.0011 19.2 1.8 0.056 13.7 0.1 2.9 3 0 0 3 3 2 1 TOBE domain AAA PF00004.29 gi|433593032|ref|YP_007282528.1| - 0.0044 17.5 0.1 0.066 13.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|433593032|ref|YP_007282528.1| - 0.0079 16.6 1.4 0.031 14.6 1.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|433593032|ref|YP_007282528.1| - 0.016 15.2 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|433593032|ref|YP_007282528.1| - 0.042 13.6 0.2 0.1 12.3 0.2 1.8 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|433593032|ref|YP_007282528.1| - 0.079 12.4 0.0 3.9 6.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein CysA_C_terminal PF17850.1 gi|433593032|ref|YP_007282528.1| - 0.11 13.1 5.0 0.57 10.8 0.2 3.5 3 0 0 3 3 3 0 CysA C-terminal regulatory domain RsgA_GTPase PF03193.16 gi|433593032|ref|YP_007282528.1| - 0.15 12.0 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 gi|433593032|ref|YP_007282528.1| - 0.15 11.7 0.1 1.6 8.3 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 gi|433593032|ref|YP_007282528.1| - 0.19 12.0 0.3 1.4 9.2 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|433593032|ref|YP_007282528.1| - 0.24 11.5 1.1 0.86 9.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|433593032|ref|YP_007282528.1| - 0.34 11.4 1.6 0.33 11.4 0.4 1.4 2 0 0 2 2 1 0 AAA domain CarboxypepD_reg PF13620.6 gi|433593033|ref|YP_007282529.1| - 0.0016 18.7 0.0 0.0022 18.2 0.0 1.4 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4198 PF10670.9 gi|433593033|ref|YP_007282529.1| - 0.049 14.0 0.0 0.06 13.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) Big_1 PF02369.16 gi|433593033|ref|YP_007282529.1| - 0.18 11.8 0.0 1.3 9.0 0.0 2.3 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 1) CitMHS PF03600.16 gi|433593035|ref|YP_007282531.1| - 5.2e-65 219.6 0.9 5.2e-65 219.6 0.9 1.9 2 1 0 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|433593035|ref|YP_007282531.1| - 2e-22 79.9 39.8 5.7e-16 58.6 15.6 3.1 2 1 0 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|433593035|ref|YP_007282531.1| - 1.9e-19 69.3 4.8 3.2e-10 39.7 0.2 2.5 2 0 0 2 2 2 2 TrkA-C domain UPF0444 PF15475.6 gi|433593035|ref|YP_007282531.1| - 0.63 10.3 7.6 0.36 11.1 4.3 2.4 2 0 0 2 2 2 0 Transmembrane protein C12orf23, UPF0444 CPP1-like PF11833.8 gi|433593036|ref|YP_007282532.1| - 0.032 13.9 3.1 0.041 13.5 3.1 1.2 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like Yip1 PF04893.17 gi|433593036|ref|YP_007282532.1| - 0.13 12.0 7.3 0.15 11.8 7.3 1.1 1 0 0 1 1 1 0 Yip1 domain DUF5353 PF17304.2 gi|433593036|ref|YP_007282532.1| - 2.6 7.9 5.5 0.84 9.4 2.2 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5353) CTP_transf_like PF01467.26 gi|433593037|ref|YP_007282533.1| - 9.9e-14 51.7 0.0 1.2e-13 51.4 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|433593037|ref|YP_007282533.1| - 0.031 14.2 0.1 0.061 13.2 0.1 1.5 2 0 0 2 2 2 0 FAD synthetase Helicase_C_2 PF13307.6 gi|433593038|ref|YP_007282534.1| - 3.3e-33 115.3 0.0 1e-32 113.7 0.0 1.8 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|433593038|ref|YP_007282534.1| - 8.9e-07 28.7 0.0 3.8e-06 26.6 0.0 2.0 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|433593038|ref|YP_007282534.1| - 0.0028 17.7 0.0 0.051 13.6 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|433593038|ref|YP_007282534.1| - 0.0029 17.1 0.0 0.006 16.1 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein DEAD PF00270.29 gi|433593038|ref|YP_007282534.1| - 0.0041 16.9 0.0 0.67 9.7 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|433593038|ref|YP_007282534.1| - 0.0085 15.4 0.0 0.064 12.5 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) HBB PF06777.11 gi|433593038|ref|YP_007282534.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Helical and beta-bridge domain Uds1 PF15456.6 gi|433593038|ref|YP_007282534.1| - 0.2 11.8 0.1 0.5 10.5 0.1 1.6 1 0 0 1 1 1 0 Up-regulated During Septation DUF371 PF04027.13 gi|433593039|ref|YP_007282535.1| - 0.00046 20.2 0.0 0.00054 19.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF1684 PF07920.11 gi|433593040|ref|YP_007282536.1| - 5.2e-49 166.1 0.1 7.4e-49 165.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Methyltransf_11 PF08241.12 gi|433593041|ref|YP_007282537.1| - 8.5e-24 84.0 0.0 1.4e-23 83.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433593041|ref|YP_007282537.1| - 1.4e-19 70.6 0.0 2.6e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433593041|ref|YP_007282537.1| - 6.5e-17 61.7 0.0 8.4e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|433593041|ref|YP_007282537.1| - 5.1e-14 52.4 0.0 6.8e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433593041|ref|YP_007282537.1| - 1.5e-11 44.0 0.0 2.7e-11 43.3 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|433593041|ref|YP_007282537.1| - 2.4e-11 44.2 0.0 3.8e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|433593041|ref|YP_007282537.1| - 0.00013 22.0 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|433593041|ref|YP_007282537.1| - 0.00016 21.1 0.0 0.00021 20.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|433593041|ref|YP_007282537.1| - 0.00036 20.2 0.0 0.00052 19.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|433593041|ref|YP_007282537.1| - 0.00059 18.9 0.0 0.00087 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|433593041|ref|YP_007282537.1| - 0.0027 17.3 0.0 0.0071 15.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|433593041|ref|YP_007282537.1| - 0.0034 17.2 0.0 0.0063 16.3 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.15 gi|433593041|ref|YP_007282537.1| - 0.0066 16.3 0.0 0.024 14.5 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase Fibrillarin PF01269.17 gi|433593041|ref|YP_007282537.1| - 0.023 13.8 0.0 0.04 13.0 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin N6_N4_Mtase PF01555.18 gi|433593041|ref|YP_007282537.1| - 0.031 14.0 0.0 2.4 7.8 0.0 2.2 2 0 0 2 2 2 0 DNA methylase Methyltransf_2 PF00891.18 gi|433593041|ref|YP_007282537.1| - 0.067 12.5 0.0 0.087 12.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_29 PF03141.16 gi|433593041|ref|YP_007282537.1| - 0.089 11.3 0.0 0.14 10.7 0.0 1.3 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.13 gi|433593041|ref|YP_007282537.1| - 0.23 10.8 0.0 0.45 9.9 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) ATPase PF06745.13 gi|433593042|ref|YP_007282538.1| - 1.8e-06 27.5 0.0 2.3e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 KaiC SIP PF04954.13 gi|433593042|ref|YP_007282538.1| - 0.17 12.4 0.2 0.35 11.4 0.0 1.6 2 0 0 2 2 2 0 Siderophore-interacting protein DUF2072 PF09845.9 gi|433593045|ref|YP_007282541.1| - 1.7e-34 119.0 0.3 5e-16 59.2 0.0 2.4 2 0 0 2 2 2 2 Zn-ribbon containing protein DUF1451 PF07295.11 gi|433593045|ref|YP_007282541.1| - 0.029 14.4 1.3 0.052 13.6 1.3 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|433593045|ref|YP_007282541.1| - 0.047 13.8 3.1 0.11 12.7 3.1 1.6 1 0 0 1 1 1 0 Zinc ribbon domain zf-C2H2_11 PF16622.5 gi|433593045|ref|YP_007282541.1| - 0.13 12.1 0.1 0.29 10.9 0.1 1.6 1 0 0 1 1 1 0 zinc-finger C2H2-type zf-C2HC_2 PF13913.6 gi|433593045|ref|YP_007282541.1| - 0.16 11.9 0.7 0.31 11.0 0.7 1.4 1 0 0 1 1 1 0 zinc-finger of a C2HC-type HypA PF01155.19 gi|433593045|ref|YP_007282541.1| - 0.19 11.8 0.6 0.29 11.2 0.6 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|433593045|ref|YP_007282541.1| - 1.2 8.9 4.5 2.5 8.0 4.5 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF2073 PF09846.9 gi|433593046|ref|YP_007282542.1| - 1.9e-45 153.0 0.9 2.3e-45 152.8 0.9 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|433593047|ref|YP_007282543.1| - 4.2e-15 55.8 0.0 5.5e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|433593047|ref|YP_007282543.1| - 1e-10 41.5 0.3 0.00034 20.2 0.0 3.3 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|433593047|ref|YP_007282543.1| - 4.5e-07 29.5 0.0 0.00047 19.6 0.1 2.5 2 1 1 3 3 3 2 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|433593047|ref|YP_007282543.1| - 1.4e-05 25.1 0.0 0.11 12.3 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|433593047|ref|YP_007282543.1| - 1.9e-05 24.3 0.1 0.00012 21.6 0.1 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B SRPRB PF09439.10 gi|433593047|ref|YP_007282543.1| - 0.00042 19.8 0.0 0.17 11.3 0.0 2.2 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|433593047|ref|YP_007282543.1| - 0.0005 19.4 0.0 0.0011 18.3 0.0 1.4 1 1 0 1 1 1 1 Septin MMR_HSR1_Xtn PF16897.5 gi|433593047|ref|YP_007282543.1| - 0.00068 19.6 0.1 0.0012 18.8 0.0 1.5 1 1 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA PF00004.29 gi|433593047|ref|YP_007282543.1| - 0.00099 19.5 0.1 0.022 15.2 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|433593047|ref|YP_007282543.1| - 0.0011 18.2 0.0 0.0019 17.5 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_18 PF13238.6 gi|433593047|ref|YP_007282543.1| - 0.0011 19.5 0.0 0.0045 17.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain Ras PF00071.22 gi|433593047|ref|YP_007282543.1| - 0.0014 18.2 0.0 0.43 10.2 0.0 2.5 2 1 0 2 2 2 1 Ras family AAA_24 PF13479.6 gi|433593047|ref|YP_007282543.1| - 0.0015 18.3 0.0 0.0027 17.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain Roc PF08477.13 gi|433593047|ref|YP_007282543.1| - 0.0032 17.7 0.0 0.016 15.4 0.0 1.9 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase ATPase_2 PF01637.18 gi|433593047|ref|YP_007282543.1| - 0.0068 16.3 0.0 0.03 14.3 0.0 1.9 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|433593047|ref|YP_007282543.1| - 0.0072 16.7 0.0 0.012 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|433593047|ref|YP_007282543.1| - 0.0073 16.6 0.3 0.031 14.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 gi|433593047|ref|YP_007282543.1| - 0.012 15.7 0.0 1.1 9.3 0.1 2.5 1 1 0 2 2 2 0 Dynamin family RNA_helicase PF00910.22 gi|433593047|ref|YP_007282543.1| - 0.012 16.0 0.0 0.018 15.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|433593047|ref|YP_007282543.1| - 0.015 15.8 0.0 0.022 15.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter cobW PF02492.19 gi|433593047|ref|YP_007282543.1| - 0.016 14.8 0.2 5.7 6.5 0.1 2.3 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RuvB_N PF05496.12 gi|433593047|ref|YP_007282543.1| - 0.04 13.7 0.0 0.077 12.7 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|433593047|ref|YP_007282543.1| - 0.044 13.3 0.2 0.1 12.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|433593047|ref|YP_007282543.1| - 0.052 13.5 0.0 0.085 12.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|433593047|ref|YP_007282543.1| - 0.085 13.1 0.0 0.17 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|433593047|ref|YP_007282543.1| - 0.15 11.1 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TniB PF05621.11 gi|433593047|ref|YP_007282543.1| - 0.15 11.4 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein Cdc6_C PF09079.11 gi|433593058|ref|YP_007282544.1| - 1e-13 51.1 0.0 2.3e-13 49.9 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|433593058|ref|YP_007282544.1| - 2.9e-11 43.8 0.0 1.3e-10 41.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433593058|ref|YP_007282544.1| - 1.6e-07 31.8 0.0 5e-07 30.3 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|433593058|ref|YP_007282544.1| - 1.5e-05 25.4 0.0 5.4e-05 23.6 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|433593058|ref|YP_007282544.1| - 0.004 16.3 0.0 0.0064 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|433593058|ref|YP_007282544.1| - 0.0058 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|433593058|ref|YP_007282544.1| - 0.0061 16.6 0.0 0.47 10.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ResIII PF04851.15 gi|433593058|ref|YP_007282544.1| - 0.052 13.5 0.0 0.17 11.9 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TniB PF05621.11 gi|433593058|ref|YP_007282544.1| - 0.067 12.6 0.0 0.21 11.0 0.0 1.8 1 1 0 1 1 1 0 Bacterial TniB protein RuvB_N PF05496.12 gi|433593058|ref|YP_007282544.1| - 0.085 12.6 0.0 0.71 9.6 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|433593058|ref|YP_007282544.1| - 0.1 12.1 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|433593058|ref|YP_007282544.1| - 0.13 12.3 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|433593058|ref|YP_007282544.1| - 0.13 12.6 0.0 0.55 10.6 0.0 2.1 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|433593058|ref|YP_007282544.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase_C PF13335.6 gi|433593058|ref|YP_007282544.1| - 0.16 12.6 0.1 0.39 11.4 0.1 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal CSTF2_hinge PF14327.6 gi|433593060|ref|YP_007282546.1| - 0.084 13.3 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 DUF2274 PF10038.9 gi|433593060|ref|YP_007282546.1| - 0.13 12.7 1.0 4.2 7.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2274) MarR_2 PF12802.7 gi|433593061|ref|YP_007282547.1| - 1e-14 54.2 1.3 6.6e-08 32.3 0.6 2.6 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|433593061|ref|YP_007282547.1| - 2.7e-09 36.8 0.2 0.00039 20.2 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|433593061|ref|YP_007282547.1| - 2e-08 34.4 0.0 0.002 18.4 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator MarR PF01047.22 gi|433593061|ref|YP_007282547.1| - 7.2e-08 32.2 0.0 0.0036 17.2 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|433593061|ref|YP_007282547.1| - 1.5e-07 30.8 0.1 0.0063 16.0 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|433593061|ref|YP_007282547.1| - 5.4e-07 30.0 1.0 4e-06 27.2 0.3 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|433593061|ref|YP_007282547.1| - 2.2e-06 27.3 0.1 0.016 15.0 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|433593061|ref|YP_007282547.1| - 3.8e-06 26.8 0.0 0.00093 19.1 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|433593061|ref|YP_007282547.1| - 4.1e-06 26.7 0.2 0.057 13.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_IclR PF09339.10 gi|433593061|ref|YP_007282547.1| - 8.4e-06 25.5 0.1 0.2 11.5 0.0 2.9 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|433593061|ref|YP_007282547.1| - 1.3e-05 25.2 1.3 0.033 14.3 0.0 3.0 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_20 PF12840.7 gi|433593061|ref|YP_007282547.1| - 1.6e-05 24.9 0.3 0.068 13.2 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain GntR PF00392.21 gi|433593061|ref|YP_007282547.1| - 0.0024 17.5 0.0 2.7 7.7 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family DUF746 PF05344.11 gi|433593061|ref|YP_007282547.1| - 0.0027 17.5 0.0 0.006 16.4 0.0 1.6 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) Penicillinase_R PF03965.16 gi|433593061|ref|YP_007282547.1| - 0.0044 17.4 0.0 4.2 7.7 0.0 2.4 2 0 0 2 2 2 2 Penicillinase repressor Crp PF00325.20 gi|433593061|ref|YP_007282547.1| - 0.0049 16.5 0.7 0.026 14.2 0.3 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_5 PF01022.20 gi|433593061|ref|YP_007282547.1| - 0.0074 16.1 0.0 3.4 7.6 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family LZ_Tnp_IS481 PF13011.6 gi|433593061|ref|YP_007282547.1| - 0.071 13.7 0.0 0.17 12.5 0.0 1.6 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 RP-C PF03428.13 gi|433593061|ref|YP_007282547.1| - 0.099 12.3 0.2 0.36 10.5 0.0 1.9 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_47 PF16221.5 gi|433593061|ref|YP_007282547.1| - 0.14 11.7 0.0 3.7 7.2 0.0 2.7 3 0 0 3 3 3 0 winged helix-turn-helix HTH_38 PF13936.6 gi|433593061|ref|YP_007282547.1| - 0.3 10.9 1.4 2.9 7.7 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|433593062|ref|YP_007282548.1| - 0.00089 19.3 0.1 0.0021 18.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2204 PF09970.9 gi|433593062|ref|YP_007282548.1| - 0.011 15.4 0.2 0.17 11.5 0.0 2.1 2 0 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) TFIIE_beta PF02186.15 gi|433593062|ref|YP_007282548.1| - 0.024 14.9 0.0 0.049 13.9 0.0 1.5 1 0 0 1 1 1 0 TFIIE beta subunit core domain HTH_AsnC-type PF13404.6 gi|433593062|ref|YP_007282548.1| - 0.049 13.5 0.0 0.094 12.6 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|433593062|ref|YP_007282548.1| - 0.068 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 MarR family SWIM PF04434.17 gi|433593063|ref|YP_007282549.1| - 0.017 14.8 0.6 0.047 13.4 0.6 1.7 1 1 0 1 1 1 0 SWIM zinc finger Peptidase_M78 PF06114.13 gi|433593064|ref|YP_007282550.1| - 0.003 17.5 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain SprT-like PF10263.9 gi|433593064|ref|YP_007282550.1| - 0.014 15.2 0.3 0.04 13.8 0.1 1.7 2 0 0 2 2 2 0 SprT-like family Aminopep PF10023.9 gi|433593064|ref|YP_007282550.1| - 0.047 13.1 0.0 0.074 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative aminopeptidase DUF2268 PF10026.9 gi|433593064|ref|YP_007282550.1| - 0.091 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) SBF PF01758.16 gi|433593065|ref|YP_007282551.1| - 8.9e-19 67.9 7.1 8.9e-19 67.9 7.1 2.5 2 1 1 3 3 3 1 Sodium Bile acid symporter family MscS_TM PF12794.7 gi|433593065|ref|YP_007282551.1| - 8.9 5.1 21.4 0.78 8.5 13.1 2.8 2 1 0 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 Ribonuc_L-PSP PF01042.21 gi|433593068|ref|YP_007282554.1| - 3.6e-20 72.2 0.0 4.5e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP HTH_20 PF12840.7 gi|433593069|ref|YP_007282555.1| - 3.1e-10 39.9 1.3 4.4e-10 39.5 0.3 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433593069|ref|YP_007282555.1| - 8.2e-08 32.0 0.4 1.8e-07 30.9 0.2 1.7 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|433593069|ref|YP_007282555.1| - 0.0039 17.6 0.0 0.0074 16.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|433593069|ref|YP_007282555.1| - 0.0067 16.1 0.0 0.011 15.4 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|433593069|ref|YP_007282555.1| - 0.0073 16.2 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|433593069|ref|YP_007282555.1| - 0.0081 16.0 0.1 0.025 14.5 0.1 1.9 1 1 0 1 1 1 1 MarR family GntR PF00392.21 gi|433593069|ref|YP_007282555.1| - 0.014 15.1 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PaaX PF07848.12 gi|433593069|ref|YP_007282555.1| - 0.027 14.7 0.0 0.047 13.9 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein HTH_34 PF13601.6 gi|433593069|ref|YP_007282555.1| - 0.073 13.3 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain SBF PF01758.16 gi|433593070|ref|YP_007282556.1| - 2.3e-51 174.3 9.5 2.3e-51 174.3 9.5 1.9 2 0 0 2 2 2 1 Sodium Bile acid symporter family PMT_4TMC PF16192.5 gi|433593070|ref|YP_007282556.1| - 6.7 6.2 9.0 5.5 6.5 1.5 3.0 3 0 0 3 3 3 0 C-terminal four TMM region of protein-O-mannosyltransferase LMWPc PF01451.21 gi|433593071|ref|YP_007282557.1| - 2.6e-29 102.4 0.3 8.1e-29 100.8 0.3 1.6 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase ACP53EA PF06313.11 gi|433593072|ref|YP_007282558.1| - 0.015 15.5 0.0 0.03 14.5 0.0 1.4 1 1 1 2 2 2 0 Drosophila ACP53EA protein Pyr_redox_2 PF07992.14 gi|433593073|ref|YP_007282559.1| - 3.4e-55 187.3 2.5 5.5e-55 186.7 2.5 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|433593073|ref|YP_007282559.1| - 2.3e-31 108.3 0.7 3.7e-31 107.6 0.7 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|433593073|ref|YP_007282559.1| - 1.7e-13 50.9 0.9 5.6e-13 49.3 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|433593073|ref|YP_007282559.1| - 0.00016 20.9 0.8 0.0035 16.5 0.3 2.4 1 1 1 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|433593073|ref|YP_007282559.1| - 0.00041 19.8 1.9 0.00059 19.3 0.3 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|433593073|ref|YP_007282559.1| - 0.00048 19.5 0.4 0.0018 17.6 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|433593073|ref|YP_007282559.1| - 0.057 12.5 0.0 5.8 5.9 0.1 2.3 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.18 gi|433593073|ref|YP_007282559.1| - 0.073 13.0 2.0 0.075 12.9 0.5 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|433593073|ref|YP_007282559.1| - 0.15 11.1 6.6 0.097 11.7 2.6 2.5 2 1 0 2 2 2 0 Glucose inhibited division protein A HxlR PF01638.17 gi|433593074|ref|YP_007282560.1| - 1.2e-17 63.5 0.0 1.3e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|433593074|ref|YP_007282560.1| - 0.0005 19.9 0.0 0.0008 19.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|433593074|ref|YP_007282560.1| - 0.0014 18.8 0.0 0.0018 18.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|433593074|ref|YP_007282560.1| - 0.002 18.1 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|433593074|ref|YP_007282560.1| - 0.019 14.9 0.1 0.039 13.9 0.0 1.6 2 0 0 2 2 2 0 MarR family Replic_Relax PF13814.6 gi|433593074|ref|YP_007282560.1| - 0.032 14.3 0.0 0.037 14.1 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_20 PF12840.7 gi|433593074|ref|YP_007282560.1| - 0.036 14.1 0.0 0.066 13.3 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain FUR PF01475.19 gi|433593074|ref|YP_007282560.1| - 0.046 13.9 0.0 0.051 13.7 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_Crp_2 PF13545.6 gi|433593074|ref|YP_007282560.1| - 0.058 13.4 0.0 0.098 12.6 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF993 PF06187.11 gi|433593076|ref|YP_007282562.1| - 0.0036 16.3 0.1 0.0055 15.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF993) DUF402 PF04167.13 gi|433593076|ref|YP_007282562.1| - 0.052 13.8 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF402) TSC22 PF01166.18 gi|433593082|ref|YP_007282568.1| - 0.013 15.7 0.4 0.022 15.1 0.4 1.3 1 0 0 1 1 1 0 TSC-22/dip/bun family SNAP-25 PF00835.19 gi|433593082|ref|YP_007282568.1| - 0.12 12.7 0.0 12 6.3 0.0 2.1 2 0 0 2 2 2 0 SNAP-25 family RPA_interact_C PF14768.6 gi|433593084|ref|YP_007282570.1| - 0.0039 17.7 0.4 0.0051 17.3 0.4 1.2 1 0 0 1 1 1 1 Replication protein A interacting C-terminal zinc_ribbon_2 PF13240.6 gi|433593084|ref|YP_007282570.1| - 0.0075 15.9 1.5 3.2 7.6 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DUF2318 PF10080.9 gi|433593084|ref|YP_007282570.1| - 0.014 15.5 0.1 0.017 15.2 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DZR PF12773.7 gi|433593084|ref|YP_007282570.1| - 0.017 15.2 1.0 0.026 14.5 1.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|433593084|ref|YP_007282570.1| - 0.051 13.5 2.8 6.2 6.8 0.1 2.7 3 0 0 3 3 3 0 Nudix N-terminal GFA PF04828.14 gi|433593084|ref|YP_007282570.1| - 0.054 13.8 1.2 1.2 9.5 0.1 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DpnI PF06044.12 gi|433593084|ref|YP_007282570.1| - 0.079 12.6 0.5 0.11 12.1 0.5 1.2 1 0 0 1 1 1 0 Dam-replacing family A2L_zn_ribbon PF08792.10 gi|433593084|ref|YP_007282570.1| - 0.08 12.7 1.0 0.75 9.6 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|433593084|ref|YP_007282570.1| - 1.4 9.0 5.8 1.5 8.9 0.3 2.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|433593084|ref|YP_007282570.1| - 1.7 8.8 4.1 16 5.8 0.7 2.3 1 1 2 3 3 3 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|433593085|ref|YP_007282571.1| - 0.0096 15.8 0.2 0.0096 15.8 0.2 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.6 gi|433593085|ref|YP_007282571.1| - 0.02 15.3 0.7 0.059 13.8 0.5 1.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar Elf1 PF05129.13 gi|433593085|ref|YP_007282571.1| - 0.093 12.8 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Rubredoxin_2 PF18073.1 gi|433593085|ref|YP_007282571.1| - 1.9 8.3 6.0 0.57 10.0 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain E1-E2_ATPase PF00122.20 gi|433593088|ref|YP_007282574.1| - 1.1e-56 191.2 0.5 4.1e-56 189.4 0.6 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433593088|ref|YP_007282574.1| - 1.3e-41 143.2 10.1 1.6e-41 142.9 8.3 2.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|433593088|ref|YP_007282574.1| - 2.3e-17 63.2 0.2 4.7e-16 59.0 0.0 2.9 3 0 0 3 3 3 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|433593088|ref|YP_007282574.1| - 0.00065 19.5 0.9 0.0058 16.4 0.5 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433593088|ref|YP_007282574.1| - 0.0011 19.4 0.7 0.0048 17.3 0.4 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Myosin_N PF02736.19 gi|433593088|ref|YP_007282574.1| - 0.08 12.8 0.0 11 5.9 0.0 2.9 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain HTH_10 PF04967.12 gi|433593089|ref|YP_007282575.1| - 2.2e-15 56.2 0.3 4.1e-15 55.3 0.0 1.6 2 0 0 2 2 2 1 HTH DNA binding domain MarR_2 PF12802.7 gi|433593089|ref|YP_007282575.1| - 4.1e-05 23.4 0.2 0.0002 21.2 0.0 2.3 3 0 0 3 3 3 1 MarR family HTH_30 PF13556.6 gi|433593089|ref|YP_007282575.1| - 6.7e-05 22.6 0.1 0.00022 21.0 0.1 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.19 gi|433593089|ref|YP_007282575.1| - 0.0047 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_psq PF05225.16 gi|433593089|ref|YP_007282575.1| - 0.0084 15.8 0.3 0.028 14.2 0.3 1.9 1 1 0 1 1 1 1 helix-turn-helix, Psq domain HTH_24 PF13412.6 gi|433593089|ref|YP_007282575.1| - 0.012 15.1 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433593089|ref|YP_007282575.1| - 0.012 15.6 0.7 0.033 14.3 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|433593089|ref|YP_007282575.1| - 0.071 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|433593089|ref|YP_007282575.1| - 0.081 12.7 0.1 0.26 11.1 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|433593089|ref|YP_007282575.1| - 0.094 12.9 0.1 0.24 11.6 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|433593089|ref|YP_007282575.1| - 0.13 12.0 0.0 0.52 10.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 DUF4988 PF16378.5 gi|433593091|ref|YP_007282577.1| - 0.17 11.6 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function zf-ribbon_3 PF13248.6 gi|433593094|ref|YP_007282580.1| - 0.0049 16.2 2.6 0.0049 16.2 2.6 2.8 3 0 0 3 3 3 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|433593094|ref|YP_007282580.1| - 0.032 14.1 8.9 2.4 8.1 0.3 4.7 5 0 0 5 5 5 0 RNA polymerases M/15 Kd subunit zinc_ribbon_15 PF17032.5 gi|433593094|ref|YP_007282580.1| - 0.35 11.7 9.7 2.6 8.9 0.1 3.6 3 1 1 4 4 4 0 zinc-ribbon family HypA PF01155.19 gi|433593094|ref|YP_007282580.1| - 0.69 10.0 6.5 9 6.4 1.0 2.4 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|433593094|ref|YP_007282580.1| - 3.7 7.7 14.3 0.29 11.2 0.3 3.7 2 1 0 2 2 2 0 Double zinc ribbon TFIIB PF00382.19 gi|433593095|ref|YP_007282581.1| - 9.7e-32 108.8 0.5 3e-16 59.2 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433593095|ref|YP_007282581.1| - 9.1e-13 47.5 2.3 1.6e-12 46.7 2.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|433593095|ref|YP_007282581.1| - 0.00076 19.5 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain Cyclin_C PF02984.19 gi|433593095|ref|YP_007282581.1| - 0.015 15.4 0.0 0.12 12.5 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain DZR PF12773.7 gi|433593095|ref|YP_007282581.1| - 0.055 13.5 1.0 0.11 12.5 1.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.9 gi|433593095|ref|YP_007282581.1| - 0.15 12.1 1.9 0.31 11.1 1.9 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|433593095|ref|YP_007282581.1| - 0.18 11.8 1.1 0.42 10.6 1.1 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain LacI PF00356.21 gi|433593095|ref|YP_007282581.1| - 8 6.4 6.6 3.2 7.6 2.1 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family SIR2_2 PF13289.6 gi|433593096|ref|YP_007282582.1| - 4.4e-21 75.5 0.2 1.5e-20 73.8 0.3 1.8 2 0 0 2 2 2 1 SIR2-like domain AbiH PF14253.6 gi|433593096|ref|YP_007282582.1| - 0.00089 19.2 0.1 0.0014 18.6 0.1 1.3 1 0 0 1 1 1 1 Bacteriophage abortive infection AbiH Phageshock_PspG PF09583.10 gi|433593099|ref|YP_007282585.1| - 0.12 12.7 6.0 0.16 12.3 6.0 1.3 1 0 0 1 1 1 0 Phage shock protein G (Phageshock_PspG) tRNA_anti-codon PF01336.25 gi|433593101|ref|YP_007282587.1| - 0.0046 16.9 0.1 0.0089 16.0 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|433593101|ref|YP_007282587.1| - 0.023 14.9 0.0 0.05 13.8 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain TrmB PF01978.19 gi|433593103|ref|YP_007282589.1| - 1.4e-09 37.7 0.2 2.7e-09 36.8 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|433593103|ref|YP_007282589.1| - 7.8e-08 31.8 0.0 1.7e-06 27.5 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433593103|ref|YP_007282589.1| - 2.3e-07 30.7 0.2 5.9e-07 29.5 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433593103|ref|YP_007282589.1| - 3.3e-05 23.7 0.0 9.5e-05 22.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433593103|ref|YP_007282589.1| - 3.6e-05 23.6 0.1 9.3e-05 22.2 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|433593103|ref|YP_007282589.1| - 0.00028 20.6 0.3 0.0008 19.2 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|433593103|ref|YP_007282589.1| - 0.0025 18.3 0.1 0.0048 17.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|433593103|ref|YP_007282589.1| - 0.0029 17.5 0.1 0.0065 16.4 0.1 1.7 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_29 PF13551.6 gi|433593103|ref|YP_007282589.1| - 0.0059 16.6 0.1 0.02 14.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix MarR PF01047.22 gi|433593103|ref|YP_007282589.1| - 0.016 15.2 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 MarR family RP-C PF03428.13 gi|433593103|ref|YP_007282589.1| - 0.03 14.0 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_DeoR PF08220.12 gi|433593103|ref|YP_007282589.1| - 0.035 13.8 0.0 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|433593103|ref|YP_007282589.1| - 0.037 14.4 0.0 0.068 13.5 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.12 gi|433593103|ref|YP_007282589.1| - 0.085 12.8 0.0 0.65 10.0 0.0 2.2 2 0 0 2 2 2 0 HTH domain F-112 PF09645.10 gi|433593103|ref|YP_007282589.1| - 0.13 12.4 0.0 19 5.4 0.0 2.2 2 0 0 2 2 2 0 F-112 protein TF_Zn_Ribbon PF08271.12 gi|433593104|ref|YP_007282590.1| - 0.062 12.8 1.1 0.2 11.2 1.0 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|433593104|ref|YP_007282590.1| - 0.52 10.4 5.4 4.4 7.4 5.4 2.4 1 1 0 1 1 1 0 Double zinc ribbon DUF3073 PF11273.8 gi|433593105|ref|YP_007282591.1| - 0.12 13.2 0.8 0.17 12.7 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) Lactamase_B PF00753.27 gi|433593106|ref|YP_007282592.1| - 1.6e-07 31.6 4.5 1.6e-07 31.6 4.5 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|433593106|ref|YP_007282592.1| - 1.2e-06 28.2 1.9 1.2e-06 28.2 1.9 2.0 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Creatininase PF02633.14 gi|433593107|ref|YP_007282593.1| - 1.5e-64 217.8 0.5 1.7e-64 217.6 0.5 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Phage_tail_U PF06141.11 gi|433593108|ref|YP_007282594.1| - 0.063 13.7 0.1 0.07 13.5 0.1 1.1 1 0 0 1 1 1 0 Phage minor tail protein U Parvo_coat_N PF08398.10 gi|433593108|ref|YP_007282594.1| - 0.088 13.0 0.0 0.23 11.6 0.0 1.7 1 1 0 1 1 1 0 Parvovirus coat protein VP1 SlyX PF04102.12 gi|433593109|ref|YP_007282595.1| - 0.0028 18.2 0.7 0.033 14.8 0.4 2.5 2 0 0 2 2 2 1 SlyX ATG16 PF08614.11 gi|433593109|ref|YP_007282595.1| - 0.0039 17.4 2.7 0.0039 17.4 2.7 1.9 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) HAP1_N PF04849.13 gi|433593109|ref|YP_007282595.1| - 0.0047 16.2 0.2 0.0075 15.5 0.2 1.2 1 0 0 1 1 1 1 HAP1 N-terminal conserved region ZapB PF06005.12 gi|433593109|ref|YP_007282595.1| - 0.012 16.1 1.7 0.024 15.1 1.7 1.5 1 0 0 1 1 1 0 Cell division protein ZapB DivIC PF04977.15 gi|433593109|ref|YP_007282595.1| - 0.021 14.6 1.0 0.054 13.3 1.0 1.6 1 0 0 1 1 1 0 Septum formation initiator Prefoldin PF02996.17 gi|433593109|ref|YP_007282595.1| - 0.52 10.2 3.0 0.5 10.3 1.6 1.7 2 0 0 2 2 2 0 Prefoldin subunit TrwB_AAD_bind PF10412.9 gi|433593110|ref|YP_007282596.1| - 6.3e-09 35.2 0.0 6.3e-05 22.1 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 gi|433593110|ref|YP_007282596.1| - 2.2e-06 26.8 0.0 6.5e-05 21.9 0.2 2.1 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.7 gi|433593110|ref|YP_007282596.1| - 2.2e-06 27.6 0.0 5.2e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG FtsK_SpoIIIE PF01580.18 gi|433593110|ref|YP_007282596.1| - 0.00089 18.7 0.4 0.64 9.3 0.0 3.1 3 0 0 3 3 3 2 FtsK/SpoIIIE family HHH_6 PF14579.6 gi|433593110|ref|YP_007282596.1| - 0.026 14.8 0.0 0.061 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF87 PF01935.17 gi|433593110|ref|YP_007282596.1| - 0.044 13.9 0.0 0.14 12.2 0.0 1.9 1 1 0 1 1 1 0 Helicase HerA, central domain NACHT PF05729.12 gi|433593110|ref|YP_007282596.1| - 0.069 13.1 0.0 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|433593110|ref|YP_007282596.1| - 0.11 12.8 0.0 4.2 7.6 0.0 2.8 2 0 0 2 2 2 0 AAA domain Pox_D5 PF03288.16 gi|433593110|ref|YP_007282596.1| - 0.14 12.6 0.0 0.32 11.5 0.0 1.5 1 0 0 1 1 1 0 Poxvirus D5 protein-like Rsa3 PF14615.6 gi|433593111|ref|YP_007282597.1| - 0.13 11.8 0.0 0.33 10.5 0.0 1.7 1 0 0 1 1 1 0 Ribosome-assembly protein 3 TraG-D_C PF12696.7 gi|433593112|ref|YP_007282598.1| - 0.0002 21.3 0.0 0.00042 20.3 0.0 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.6 gi|433593112|ref|YP_007282598.1| - 0.0025 18.1 0.1 0.13 12.5 0.1 2.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433593112|ref|YP_007282598.1| - 0.0041 17.5 0.7 0.29 11.5 0.2 3.3 3 0 0 3 3 3 1 AAA ATPase domain Zot PF05707.12 gi|433593112|ref|YP_007282598.1| - 0.0081 15.8 0.1 0.099 12.3 0.1 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) OpcA_G6PD_assem PF10128.9 gi|433593112|ref|YP_007282598.1| - 0.03 13.8 0.4 0.097 12.2 0.1 1.9 2 0 0 2 2 2 0 Glucose-6-phosphate dehydrogenase subunit DUF3487 PF11990.8 gi|433593112|ref|YP_007282598.1| - 0.034 14.0 0.6 0.075 12.9 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF883 PF05957.13 gi|433593113|ref|YP_007282599.1| - 0.51 11.0 4.9 1.6 9.4 4.9 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) LTD PF00932.19 gi|433593114|ref|YP_007282600.1| - 0.0049 17.2 0.0 0.095 13.1 0.0 2.3 2 0 0 2 2 2 1 Lamin Tail Domain FlgD_ig PF13860.6 gi|433593114|ref|YP_007282600.1| - 0.008 16.0 0.2 0.019 14.8 0.2 1.7 1 0 0 1 1 1 1 FlgD Ig-like domain TrbC PF04956.13 gi|433593116|ref|YP_007282602.1| - 0.0051 17.0 0.3 0.0076 16.4 0.3 1.2 1 0 0 1 1 1 1 TrbC/VIRB2 family ATP-synt_C PF00137.21 gi|433593116|ref|YP_007282602.1| - 0.1 12.9 9.4 4.6 7.7 2.1 2.7 1 1 1 2 2 2 0 ATP synthase subunit C DUF2304 PF10066.9 gi|433593116|ref|YP_007282602.1| - 0.22 11.8 0.0 3.8 7.8 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) CsgG PF03783.14 gi|433593117|ref|YP_007282603.1| - 0.017 14.5 0.2 0.018 14.3 0.2 1.0 1 0 0 1 1 1 0 Curli production assembly/transport component CsgG SATase_N PF06426.14 gi|433593117|ref|YP_007282603.1| - 0.09 13.2 0.1 0.11 12.9 0.1 1.2 1 0 0 1 1 1 0 Serine acetyltransferase, N-terminal C1_1 PF00130.22 gi|433593118|ref|YP_007282604.1| - 0.00073 19.4 1.5 0.00073 19.4 1.5 2.1 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-UDP PF14569.6 gi|433593118|ref|YP_007282604.1| - 0.02 15.0 3.7 0.027 14.6 3.7 1.3 1 1 0 1 1 1 0 Zinc-binding RING-finger zf_C2H2_10 PF18414.1 gi|433593118|ref|YP_007282604.1| - 0.033 13.7 1.8 3.6 7.2 0.2 2.6 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-RING-like PF08746.11 gi|433593118|ref|YP_007282604.1| - 0.041 14.2 6.4 0.073 13.4 6.4 1.4 1 1 0 1 1 1 0 RING-like domain zf-HIT PF04438.16 gi|433593118|ref|YP_007282604.1| - 0.086 12.7 8.5 0.25 11.2 4.8 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-RING_2 PF13639.6 gi|433593118|ref|YP_007282604.1| - 0.12 12.7 8.4 0.16 12.3 8.4 1.2 1 0 0 1 1 1 0 Ring finger domain zf-CRD PF17979.1 gi|433593118|ref|YP_007282604.1| - 0.13 12.3 5.4 0.16 12.1 5.4 1.1 1 0 0 1 1 1 0 Cysteine rich domain with multizinc binding regions HypA PF01155.19 gi|433593118|ref|YP_007282604.1| - 0.22 11.5 7.8 0.93 9.5 2.4 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|433593118|ref|YP_007282604.1| - 0.33 10.7 0.5 0.33 10.7 0.5 3.8 3 1 1 4 4 4 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|433593118|ref|YP_007282604.1| - 1.9 8.0 13.3 5.6 6.5 0.1 3.3 2 1 1 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.8 gi|433593118|ref|YP_007282604.1| - 1.9 8.4 17.0 7.2 6.6 0.3 3.5 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-B_box PF00643.24 gi|433593118|ref|YP_007282604.1| - 2.9 8.1 16.8 1.1e+02 3.1 17.4 2.5 1 1 1 2 2 2 0 B-box zinc finger zf_UBZ PF18439.1 gi|433593118|ref|YP_007282604.1| - 3.4 7.3 15.7 4.3 7.0 0.3 4.0 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_6 PF14599.6 gi|433593118|ref|YP_007282604.1| - 4.2 7.5 14.8 1 9.5 1.6 3.1 1 1 1 2 2 2 0 Zinc-ribbon Zn-ribbon_8 PF09723.10 gi|433593118|ref|YP_007282604.1| - 5.9 7.1 18.3 38 4.5 12.1 3.4 2 1 0 2 2 2 0 Zinc ribbon domain Sortilin-Vps10 PF15902.5 gi|433593119|ref|YP_007282605.1| - 1.3e-12 47.2 0.5 3.2e-08 32.8 0.0 2.5 1 1 2 3 3 3 3 Sortilin, neurotensin receptor 3, PSII_BNR PF14870.6 gi|433593119|ref|YP_007282605.1| - 2.8e-06 26.8 2.1 0.015 14.6 0.0 3.0 2 1 0 3 3 3 2 Photosynthesis system II assembly factor YCF48 BNR PF02012.20 gi|433593119|ref|YP_007282605.1| - 2.1e-05 23.8 19.4 0.71 10.1 0.2 6.0 5 0 0 5 5 5 4 BNR/Asp-box repeat BNR_2 PF13088.6 gi|433593119|ref|YP_007282605.1| - 0.00085 18.7 2.8 3.7 6.8 0.1 3.9 1 1 0 3 3 3 2 BNR repeat-like domain End_beta_propel PF12217.8 gi|433593119|ref|YP_007282605.1| - 0.083 11.6 0.9 7.5 5.1 0.0 3.4 1 1 4 5 5 5 0 Catalytic beta propeller domain of bacteriophage endosialidase DUF4185 PF13810.6 gi|433593119|ref|YP_007282605.1| - 0.27 10.4 4.0 16 4.6 0.0 3.5 2 2 1 3 3 3 0 Domain of unknown function (DUF4185) PQQ_3 PF13570.6 gi|433593119|ref|YP_007282605.1| - 0.29 11.7 10.9 5.9 7.5 0.2 5.3 5 1 1 6 6 6 0 PQQ-like domain DUF1931 PF09123.11 gi|433593120|ref|YP_007282606.1| - 0.00052 20.1 0.7 0.00055 20.1 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|433593120|ref|YP_007282606.1| - 0.0012 19.1 0.0 0.0014 18.9 0.0 1.3 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Glutaredoxin PF00462.24 gi|433593120|ref|YP_007282606.1| - 0.077 13.2 0.2 0.1 12.9 0.2 1.2 1 0 0 1 1 1 0 Glutaredoxin DctP PF03480.13 gi|433593120|ref|YP_007282606.1| - 0.14 11.5 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 PadR PF03551.14 gi|433593121|ref|YP_007282607.1| - 4.3e-15 55.4 0.8 5.1e-15 55.2 0.8 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|433593121|ref|YP_007282607.1| - 0.0037 17.2 0.1 0.0055 16.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|433593121|ref|YP_007282607.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF2063 PF09836.9 gi|433593122|ref|YP_007282608.1| - 0.058 13.6 0.2 8.4 6.7 0.0 2.7 3 0 0 3 3 3 0 Putative DNA-binding domain RHH_1 PF01402.21 gi|433593123|ref|YP_007282609.1| - 0.036 14.0 0.3 0.063 13.2 0.2 1.4 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF4777 PF16007.5 gi|433593123|ref|YP_007282609.1| - 0.13 12.5 0.1 0.15 12.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) E1-E2_ATPase PF00122.20 gi|433593124|ref|YP_007282610.1| - 1.4e-51 174.6 7.1 6.4e-51 172.4 1.9 2.8 2 1 0 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.26 gi|433593124|ref|YP_007282610.1| - 1.7e-42 146.1 8.4 3.2e-42 145.2 8.4 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|433593124|ref|YP_007282610.1| - 1.6e-05 24.8 0.1 0.0007 19.4 0.2 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433593124|ref|YP_007282610.1| - 5e-05 23.8 0.2 0.00017 22.1 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Zip PF02535.22 gi|433593124|ref|YP_007282610.1| - 0.019 14.2 7.7 0.0059 15.9 2.2 2.7 2 1 0 2 2 2 0 ZIP Zinc transporter HMA PF00403.26 gi|433593125|ref|YP_007282611.1| - 4.1e-19 68.8 2.0 4.5e-19 68.7 2.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF3592 PF12158.8 gi|433593126|ref|YP_007282612.1| - 0.13 12.3 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3592) MerC PF03203.14 gi|433593127|ref|YP_007282613.1| - 0.19 12.2 5.3 0.25 11.8 5.3 1.2 1 0 0 1 1 1 0 MerC mercury resistance protein Oxidored_q2 PF00420.24 gi|433593127|ref|YP_007282613.1| - 0.26 11.0 0.1 0.26 11.0 0.1 2.6 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF981 PF06168.11 gi|433593127|ref|YP_007282613.1| - 0.27 11.1 8.7 0.43 10.5 8.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF981) MarR_2 PF12802.7 gi|433593128|ref|YP_007282614.1| - 6.9e-10 38.7 0.4 9.8e-10 38.2 0.0 1.5 2 0 0 2 2 1 1 MarR family HTH_24 PF13412.6 gi|433593128|ref|YP_007282614.1| - 3.4e-09 36.1 0.0 5.2e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433593128|ref|YP_007282614.1| - 2.2e-08 34.1 0.2 3.5e-08 33.4 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433593128|ref|YP_007282614.1| - 1.9e-07 30.8 0.1 3.1e-07 30.1 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|433593128|ref|YP_007282614.1| - 1.4e-05 24.9 0.0 2.7e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|433593128|ref|YP_007282614.1| - 1.6e-05 24.6 0.3 2.7e-05 23.9 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433593128|ref|YP_007282614.1| - 4.1e-05 23.5 0.0 6.1e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|433593128|ref|YP_007282614.1| - 6.8e-05 22.7 0.1 0.00016 21.5 0.1 1.6 2 0 0 2 2 2 1 HTH domain Fe_dep_repress PF01325.19 gi|433593128|ref|YP_007282614.1| - 0.00021 21.4 0.0 0.00032 20.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|433593128|ref|YP_007282614.1| - 0.0003 20.6 0.0 0.00041 20.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|433593128|ref|YP_007282614.1| - 0.00084 19.2 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|433593128|ref|YP_007282614.1| - 0.00089 19.0 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|433593128|ref|YP_007282614.1| - 0.0013 18.3 0.1 0.0021 17.7 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 GntR PF00392.21 gi|433593128|ref|YP_007282614.1| - 0.0048 16.5 0.1 0.0081 15.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Sigma70_r4 PF04545.16 gi|433593128|ref|YP_007282614.1| - 0.0052 16.3 0.0 0.0081 15.7 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 RP-C PF03428.13 gi|433593128|ref|YP_007282614.1| - 0.01 15.5 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_36 PF13730.6 gi|433593128|ref|YP_007282614.1| - 0.016 15.1 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|433593128|ref|YP_007282614.1| - 0.017 14.9 0.1 0.029 14.1 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|433593128|ref|YP_007282614.1| - 0.017 15.6 0.1 0.032 14.7 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|433593128|ref|YP_007282614.1| - 0.031 14.6 0.0 0.044 14.1 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Crp PF00325.20 gi|433593128|ref|YP_007282614.1| - 0.031 13.9 0.2 0.045 13.4 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Rrf2 PF02082.20 gi|433593128|ref|YP_007282614.1| - 0.043 14.2 0.0 0.066 13.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.9 gi|433593128|ref|YP_007282614.1| - 0.079 13.1 0.0 0.18 11.9 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_3 PF01381.22 gi|433593128|ref|YP_007282614.1| - 0.1 12.7 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_28 PF13518.6 gi|433593128|ref|YP_007282614.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_rep_O PF04492.13 gi|433593128|ref|YP_007282614.1| - 0.13 12.8 0.0 0.18 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage replication protein O DoxX PF07681.12 gi|433593129|ref|YP_007282615.1| - 7e-11 42.6 12.1 7e-11 42.6 12.1 1.8 1 1 0 2 2 2 1 DoxX AIRS PF00586.24 gi|433593129|ref|YP_007282615.1| - 1.1 10.0 3.4 2 9.1 1.7 2.4 1 1 1 2 2 2 0 AIR synthase related protein, N-terminal domain SHOCT PF09851.9 gi|433593130|ref|YP_007282616.1| - 1.1e-10 40.9 1.3 1.5e-10 40.4 1.3 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|433593130|ref|YP_007282616.1| - 0.00026 21.0 1.4 0.00053 20.0 1.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|433593130|ref|YP_007282616.1| - 0.0012 18.8 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 Gas vesicle protein G VbhA PF18495.1 gi|433593130|ref|YP_007282616.1| - 0.033 14.1 2.1 0.033 14.1 2.1 1.8 2 0 0 2 2 2 0 Antitoxin VbhA Usp PF00582.26 gi|433593131|ref|YP_007282617.1| - 2.3e-29 102.7 2.9 2.6e-29 102.6 2.9 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|433593131|ref|YP_007282617.1| - 0.02 14.9 0.3 0.044 13.8 0.3 1.5 1 1 0 1 1 1 0 DNA photolyase ArsP_1 PF03773.13 gi|433593132|ref|YP_007282618.1| - 2.5e-58 197.6 11.7 3.3e-58 197.2 11.7 1.2 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|433593132|ref|YP_007282618.1| - 5.2e-20 71.3 9.2 9e-15 54.5 3.7 2.3 2 0 0 2 2 2 2 YHS domain zf-FCS PF06467.14 gi|433593132|ref|YP_007282618.1| - 0.00019 21.3 6.3 0.031 14.2 0.8 2.4 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|433593132|ref|YP_007282618.1| - 0.081 13.3 0.2 0.081 13.3 0.2 1.9 2 0 0 2 2 2 0 Archaeal TRASH domain zf-HIT PF04438.16 gi|433593132|ref|YP_007282618.1| - 0.22 11.4 1.1 0.53 10.2 0.2 2.0 2 0 0 2 2 2 0 HIT zinc finger DUF2256 PF10013.9 gi|433593132|ref|YP_007282618.1| - 7.5 6.8 6.0 86 3.4 0.0 3.3 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) SHOCT PF09851.9 gi|433593133|ref|YP_007282619.1| - 4.2e-07 29.5 7.5 5.5e-07 29.1 7.5 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|433593133|ref|YP_007282619.1| - 8e-05 22.6 4.0 0.00014 21.9 4.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) CdvA PF18822.1 gi|433593133|ref|YP_007282619.1| - 0.054 13.3 0.1 0.065 13.1 0.1 1.1 1 0 0 1 1 1 0 CdvA-like coiled-coil domain DMAP_binding PF06464.11 gi|433593133|ref|YP_007282619.1| - 0.12 13.2 0.5 0.14 12.9 0.5 1.1 1 0 0 1 1 1 0 DMAP1-binding Domain DUF3007 PF11460.8 gi|433593133|ref|YP_007282619.1| - 0.83 9.9 4.5 15 5.9 2.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3007) Halogen_Hydrol PF10112.9 gi|433593133|ref|YP_007282619.1| - 1.1 9.2 4.9 36 4.3 4.9 2.0 1 1 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Apq12 PF12716.7 gi|433593133|ref|YP_007282619.1| - 3.7 7.6 10.1 0.14 12.1 1.8 2.1 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis Na_Pi_cotrans PF02690.15 gi|433593134|ref|YP_007282620.1| - 0.0087 16.2 0.1 0.069 13.3 0.2 2.0 2 0 0 2 2 2 1 Na+/Pi-cotransporter DUF981 PF06168.11 gi|433593134|ref|YP_007282620.1| - 0.26 11.2 11.0 0.045 13.7 4.7 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF981) YrhK PF14145.6 gi|433593134|ref|YP_007282620.1| - 0.88 9.5 6.0 14 5.7 0.2 3.1 2 1 1 3 3 3 0 YrhK-like protein HTH_20 PF12840.7 gi|433593135|ref|YP_007282621.1| - 2.4e-15 56.3 0.6 4.9e-15 55.3 0.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Type2_restr_D3 PF16902.5 gi|433593135|ref|YP_007282621.1| - 5.1e-05 23.1 0.1 0.00013 21.8 0.1 1.6 1 0 0 1 1 1 1 Type-2 restriction enzyme D3 domain HTH_5 PF01022.20 gi|433593135|ref|YP_007282621.1| - 0.00019 21.2 0.1 0.02 14.8 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|433593135|ref|YP_007282621.1| - 0.00034 20.5 0.1 0.00065 19.6 0.1 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.17 gi|433593135|ref|YP_007282621.1| - 0.00043 20.1 0.0 0.00097 19.0 0.0 1.7 1 1 0 1 1 1 1 TFIIE alpha subunit Cdc6_C PF09079.11 gi|433593135|ref|YP_007282621.1| - 0.0053 16.7 0.1 0.015 15.2 0.1 1.8 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain PadR PF03551.14 gi|433593135|ref|YP_007282621.1| - 0.0093 15.9 0.1 0.017 15.1 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|433593135|ref|YP_007282621.1| - 0.017 15.2 0.1 0.03 14.5 0.1 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.19 gi|433593135|ref|YP_007282621.1| - 0.042 13.7 0.5 0.17 11.8 0.0 2.2 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DsbB PF02600.16 gi|433593135|ref|YP_007282621.1| - 0.13 12.7 0.1 0.18 12.3 0.1 1.1 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB HMA PF00403.26 gi|433593136|ref|YP_007282622.1| - 2.2e-13 50.5 0.0 2.3e-13 50.3 0.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF276 PF03434.13 gi|433593136|ref|YP_007282622.1| - 0.015 14.4 0.0 0.015 14.4 0.0 1.0 1 0 0 1 1 1 0 DUF276 Peptidase_S8_N PF16361.5 gi|433593136|ref|YP_007282622.1| - 0.065 13.7 0.0 0.07 13.6 0.0 1.1 1 0 0 1 1 1 0 N-terminal of Subtilase family Nse4_C PF08743.10 gi|433593136|ref|YP_007282622.1| - 0.13 12.5 0.0 0.31 11.3 0.0 1.6 2 0 0 2 2 2 0 Nse4 C-terminal E1-E2_ATPase PF00122.20 gi|433593137|ref|YP_007282623.1| - 1.2e-47 161.7 0.9 1.2e-47 161.7 0.9 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|433593137|ref|YP_007282623.1| - 5.3e-37 128.1 9.9 1e-36 127.3 9.9 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|433593137|ref|YP_007282623.1| - 0.0017 18.1 2.1 0.011 15.5 1.5 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433593137|ref|YP_007282623.1| - 0.0023 18.4 0.3 0.0097 16.3 0.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase FmdE PF02663.14 gi|433593138|ref|YP_007282624.1| - 9.1e-06 25.8 0.0 3.4e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Phage_int_SAM_5 PF13102.6 gi|433593139|ref|YP_007282625.1| - 2.4e-06 27.8 0.0 6.2e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Phage integrase SAM-like domain Phage_integrase PF00589.22 gi|433593139|ref|YP_007282625.1| - 0.0012 18.6 0.0 0.014 15.2 0.0 2.3 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|433593139|ref|YP_007282625.1| - 0.0014 18.9 0.0 0.13 12.6 0.0 3.1 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain RHH_6 PF16762.5 gi|433593139|ref|YP_007282625.1| - 0.0087 16.7 0.0 2 9.1 0.0 2.7 2 0 0 2 2 2 1 Ribbon-helix-helix domain Phage_int_SAM_4 PF13495.6 gi|433593139|ref|YP_007282625.1| - 0.13 12.7 0.0 0.29 11.6 0.0 1.5 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain FUSC PF04632.12 gi|433593139|ref|YP_007282625.1| - 0.18 10.3 1.8 0.34 9.4 1.8 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family UL2 PF08196.11 gi|433593140|ref|YP_007282626.1| - 0.21 11.6 0.4 0.29 11.1 0.4 1.3 1 0 0 1 1 1 0 UL2 protein DDE_Tnp_1 PF01609.21 gi|433593141|ref|YP_007282627.1| - 3.7e-08 33.3 0.6 7e-08 32.4 0.6 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593141|ref|YP_007282627.1| - 0.00016 21.6 0.1 0.0011 19.0 0.0 2.5 2 0 0 2 2 2 1 Transposase domain (DUF772) PHO4 PF01384.20 gi|433593142|ref|YP_007282628.1| - 4.4e-42 144.3 37.3 2.3e-41 141.9 35.5 2.4 1 1 0 1 1 1 1 Phosphate transporter family Usp PF00582.26 gi|433593143|ref|YP_007282629.1| - 1.5e-11 44.9 1.2 1.8e-11 44.7 1.2 1.0 1 0 0 1 1 1 1 Universal stress protein family HK97-gp10_like PF04883.12 gi|433593143|ref|YP_007282629.1| - 0.037 15.0 0.2 0.054 14.5 0.2 1.3 1 0 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component TRM PF02005.16 gi|433593143|ref|YP_007282629.1| - 0.2 10.8 0.0 0.28 10.3 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase AAA_31 PF13614.6 gi|433593145|ref|YP_007282631.1| - 1.2e-28 100.2 0.0 1.8e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|433593145|ref|YP_007282631.1| - 8.4e-11 42.0 0.0 1.7e-10 41.1 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|433593145|ref|YP_007282631.1| - 2.8e-08 33.5 0.2 1.8e-07 30.8 0.1 1.9 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|433593145|ref|YP_007282631.1| - 7.7e-07 28.7 0.3 4.2e-05 23.0 0.3 2.9 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|433593145|ref|YP_007282631.1| - 1.1e-06 28.3 0.0 2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|433593145|ref|YP_007282631.1| - 0.00019 20.7 0.0 0.0019 17.4 0.0 2.3 3 0 0 3 3 3 1 Anion-transporting ATPase VirC1 PF07015.11 gi|433593145|ref|YP_007282631.1| - 0.0026 17.1 0.0 0.79 9.0 0.0 2.2 2 0 0 2 2 2 2 VirC1 protein Fer4_NifH PF00142.18 gi|433593145|ref|YP_007282631.1| - 0.0089 15.5 0.0 0.29 10.5 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 gi|433593145|ref|YP_007282631.1| - 0.011 15.6 0.1 0.026 14.4 0.1 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase CLP1_P PF16575.5 gi|433593145|ref|YP_007282631.1| - 0.012 15.5 0.1 0.032 14.0 0.0 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Glyco_transf_4 PF13439.6 gi|433593145|ref|YP_007282631.1| - 0.088 12.8 0.0 2.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 SRP54 PF00448.22 gi|433593145|ref|YP_007282631.1| - 0.14 11.8 0.1 4.4 6.9 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SHOCT PF09851.9 gi|433593146|ref|YP_007282632.1| - 3.1e-09 36.3 2.7 4.3e-09 35.8 2.7 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|433593146|ref|YP_007282632.1| - 3.1e-06 27.2 1.9 4.5e-06 26.6 1.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Phage_holin_3_6 PF07332.11 gi|433593146|ref|YP_007282632.1| - 0.0084 16.1 5.9 0.011 15.8 5.9 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF4131 PF13567.6 gi|433593146|ref|YP_007282632.1| - 0.021 14.5 0.1 0.027 14.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2244 PF10003.9 gi|433593146|ref|YP_007282632.1| - 0.031 13.9 5.3 0.34 10.6 0.0 2.1 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) DUF4381 PF14316.6 gi|433593146|ref|YP_007282632.1| - 0.085 13.1 0.2 0.085 13.1 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4381) CBP_BcsF PF11120.8 gi|433593146|ref|YP_007282632.1| - 0.19 11.9 0.2 0.19 11.9 0.2 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsF Promethin PF16015.5 gi|433593146|ref|YP_007282632.1| - 0.41 10.6 9.9 1.3 8.9 4.9 2.1 2 0 0 2 2 2 0 Promethin Ion_trans_2 PF07885.16 gi|433593147|ref|YP_007282633.1| - 4.4e-05 23.4 14.0 4.4e-05 23.4 14.0 2.2 2 1 0 2 2 2 1 Ion channel E1-E2_ATPase PF00122.20 gi|433593148|ref|YP_007282634.1| - 1.4e-50 171.3 2.5 1.4e-50 171.3 2.5 2.9 3 1 0 3 3 3 2 E1-E2 ATPase Hydrolase PF00702.26 gi|433593148|ref|YP_007282634.1| - 2.9e-44 151.9 6.5 4.6e-44 151.2 6.5 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|433593148|ref|YP_007282634.1| - 6e-06 26.2 0.2 0.00012 22.0 0.3 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|433593148|ref|YP_007282634.1| - 8e-05 23.1 0.9 0.00018 21.9 0.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|433593148|ref|YP_007282634.1| - 0.14 12.2 0.1 0.58 10.2 0.1 2.0 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DNA_photolyase PF00875.18 gi|433593148|ref|YP_007282634.1| - 0.17 11.9 0.0 0.45 10.5 0.0 1.7 1 0 0 1 1 1 0 DNA photolyase adh_short PF00106.25 gi|433593149|ref|YP_007282635.1| - 8.8e-45 152.6 0.0 1.2e-44 152.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|433593149|ref|YP_007282635.1| - 1e-30 107.0 0.0 1.3e-30 106.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|433593149|ref|YP_007282635.1| - 4.9e-16 59.2 0.1 6.8e-16 58.7 0.1 1.1 1 0 0 1 1 1 1 KR domain VKOR PF07884.14 gi|433593150|ref|YP_007282636.1| - 7.7e-15 55.2 7.0 7.7e-15 55.2 7.0 3.4 3 1 0 3 3 3 1 Vitamin K epoxide reductase family SPW PF03779.14 gi|433593150|ref|YP_007282636.1| - 6.3e-07 28.9 48.5 0.00035 20.1 1.6 5.4 5 0 0 5 5 5 4 SPW repeat Glyco_hydro_15 PF00723.21 gi|433593151|ref|YP_007282637.1| - 9.4e-50 169.7 0.0 1.9e-44 152.2 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_2 PF07719.17 gi|433593151|ref|YP_007282637.1| - 0.012 15.7 0.1 8.4 6.8 0.0 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|433593151|ref|YP_007282637.1| - 0.023 15.5 0.2 2.8 9.0 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|433593151|ref|YP_007282637.1| - 0.025 14.8 0.0 4.2 7.7 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF4129 PF13559.6 gi|433593151|ref|YP_007282637.1| - 0.05 13.9 0.0 0.15 12.3 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) TPR_8 PF13181.6 gi|433593151|ref|YP_007282637.1| - 0.078 13.2 0.0 25 5.4 0.0 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|433593151|ref|YP_007282637.1| - 0.94 9.4 2.4 6.4 6.8 0.0 3.1 5 0 0 5 5 5 0 Tetratricopeptide repeat SPW PF03779.14 gi|433593152|ref|YP_007282638.1| - 2.2e-07 30.3 14.0 0.0016 17.9 2.0 2.6 2 1 0 2 2 2 2 SPW repeat DUF998 PF06197.13 gi|433593152|ref|YP_007282638.1| - 0.0092 15.6 3.7 0.0092 15.6 3.7 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF998) Sarcolipin PF05366.11 gi|433593152|ref|YP_007282638.1| - 0.072 12.8 1.9 0.57 9.9 0.4 2.5 2 0 0 2 2 2 0 Sarcolipin MHYT PF03707.16 gi|433593152|ref|YP_007282638.1| - 0.08 13.1 2.0 5.9 7.1 0.1 2.7 2 1 1 3 3 3 0 Bacterial signalling protein N terminal repeat DUF308 PF03729.13 gi|433593152|ref|YP_007282638.1| - 0.083 13.2 8.0 2 8.8 1.2 2.4 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF1304 PF06993.12 gi|433593152|ref|YP_007282638.1| - 0.18 11.8 2.9 0.23 11.5 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1304) TraQ PF09679.10 gi|433593152|ref|YP_007282638.1| - 3.6 7.6 9.2 2.5 8.1 1.5 2.1 1 1 1 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) DUF326 PF03860.16 gi|433593153|ref|YP_007282639.1| - 1.5e-07 31.2 53.7 0.00043 20.1 9.6 4.9 4 1 1 5 5 5 4 Domain of Unknown Function (DUF326) TssN PF17555.2 gi|433593154|ref|YP_007282640.1| - 0.47 9.8 4.0 0.56 9.6 4.0 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF2070 PF09843.9 gi|433593154|ref|YP_007282640.1| - 0.77 8.0 5.5 0.92 7.7 5.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Mrr_N PF14338.6 gi|433593155|ref|YP_007282641.1| - 0.045 13.9 0.1 0.095 12.8 0.1 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain HTH_12 PF08461.10 gi|433593155|ref|YP_007282641.1| - 0.06 13.3 0.2 0.093 12.7 0.2 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF505 PF04458.12 gi|433593155|ref|YP_007282641.1| - 0.066 11.6 0.0 0.081 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) MarR_2 PF12802.7 gi|433593155|ref|YP_007282641.1| - 0.07 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF3267 PF11667.8 gi|433593155|ref|YP_007282641.1| - 0.12 12.7 1.3 0.2 12.0 1.3 1.3 1 0 0 1 1 1 0 Putative zincin peptidase Rio2_N PF09202.11 gi|433593155|ref|YP_007282641.1| - 0.12 12.6 0.0 0.21 11.9 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal Replic_Relax PF13814.6 gi|433593155|ref|YP_007282641.1| - 0.17 11.9 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation z-alpha PF02295.17 gi|433593155|ref|YP_007282641.1| - 0.2 11.7 0.0 0.34 11.0 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HpaB PF03241.13 gi|433593157|ref|YP_007282643.1| - 0.12 11.4 0.1 0.12 11.4 0.1 1.0 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal S_4TM PF18159.1 gi|433593157|ref|YP_007282643.1| - 0.47 9.7 5.5 0.52 9.6 5.5 1.0 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain Phage_integrase PF00589.22 gi|433593158|ref|YP_007282644.1| - 6.6e-16 58.6 0.0 4.5e-15 55.9 0.0 2.2 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|433593158|ref|YP_007282644.1| - 2.3e-09 37.4 0.2 5.4e-09 36.2 0.2 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|433593158|ref|YP_007282644.1| - 4e-05 24.0 0.1 8.4e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HTH_23 PF13384.6 gi|433593159|ref|YP_007282645.1| - 3.6e-05 23.4 0.1 0.00013 21.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|433593159|ref|YP_007282645.1| - 0.00019 21.5 0.4 0.0005 20.1 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|433593159|ref|YP_007282645.1| - 0.0006 19.7 0.3 0.0016 18.4 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 gi|433593159|ref|YP_007282645.1| - 0.0012 18.7 0.1 0.0023 17.8 0.1 1.5 1 1 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|433593159|ref|YP_007282645.1| - 0.0018 18.4 0.0 0.0094 16.1 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|433593159|ref|YP_007282645.1| - 0.0045 17.3 0.0 0.061 13.7 0.0 2.4 3 0 0 3 3 3 1 Transcriptional regulator TrmB PF01978.19 gi|433593159|ref|YP_007282645.1| - 0.0082 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|433593159|ref|YP_007282645.1| - 0.0093 15.9 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_30 PF13556.6 gi|433593159|ref|YP_007282645.1| - 0.012 15.4 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GntR PF00392.21 gi|433593159|ref|YP_007282645.1| - 0.013 15.2 0.0 0.034 13.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|433593159|ref|YP_007282645.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF883 PF05957.13 gi|433593159|ref|YP_007282645.1| - 0.025 15.2 0.5 0.046 14.3 0.5 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) RPA_C PF08784.11 gi|433593159|ref|YP_007282645.1| - 0.051 14.2 0.0 0.089 13.5 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal DUF2250 PF10007.9 gi|433593159|ref|YP_007282645.1| - 0.09 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Tnp_ISL3 PF13542.6 gi|433593159|ref|YP_007282645.1| - 0.1 12.0 0.1 0.35 10.3 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 LPD11 PF18824.1 gi|433593159|ref|YP_007282645.1| - 0.43 10.7 2.1 12 6.0 0.5 2.3 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 11 NTP_transf_5 PF14907.6 gi|433593160|ref|YP_007282646.1| - 5.3e-08 32.8 0.1 7.1e-08 32.4 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase AbiEii PF08843.11 gi|433593160|ref|YP_007282646.1| - 0.0009 19.3 0.1 0.0068 16.4 0.0 2.0 2 0 0 2 2 2 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system Propep_M14 PF02244.16 gi|433593160|ref|YP_007282646.1| - 0.01 16.2 0.0 0.031 14.7 0.0 1.9 1 0 0 1 1 1 0 Carboxypeptidase activation peptide GrpB PF04229.14 gi|433593160|ref|YP_007282646.1| - 0.021 15.0 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 GrpB protein TRAM PF01938.20 gi|433593162|ref|YP_007282648.1| - 3.9e-16 58.8 2.4 3.9e-16 58.8 2.4 1.5 2 0 0 2 2 2 1 TRAM domain UvrD-helicase PF00580.21 gi|433593163|ref|YP_007282649.1| - 1.3e-51 176.0 0.1 4.6e-51 174.2 0.0 1.9 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|433593163|ref|YP_007282649.1| - 2.7e-30 106.0 0.0 1.5e-17 64.0 0.0 2.2 1 1 1 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|433593163|ref|YP_007282649.1| - 1.9e-27 96.4 0.0 8.5e-27 94.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 gi|433593163|ref|YP_007282649.1| - 2.2e-10 40.2 0.2 6.6e-05 22.7 0.1 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|433593163|ref|YP_007282649.1| - 7e-09 36.0 1.6 1.7e-07 31.5 1.0 2.9 2 1 1 3 3 3 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.6 gi|433593163|ref|YP_007282649.1| - 2.8e-07 30.5 0.0 2.1e-06 27.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.6 gi|433593163|ref|YP_007282649.1| - 0.0002 21.0 0.0 0.043 13.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|433593163|ref|YP_007282649.1| - 0.00032 20.6 0.0 0.022 14.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|433593163|ref|YP_007282649.1| - 0.096 11.9 0.0 11 5.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|433593163|ref|YP_007282649.1| - 0.11 11.9 0.0 6.3 6.2 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein PDDEXK_1 PF12705.7 gi|433593164|ref|YP_007282650.1| - 2.6e-14 53.8 0.5 6.3e-14 52.5 0.1 1.9 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C PF13361.6 gi|433593164|ref|YP_007282650.1| - 0.009 15.4 0.0 0.017 14.5 0.0 1.6 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain N6_Mtase PF02384.16 gi|433593167|ref|YP_007282653.1| - 3.5e-11 42.9 0.0 1.2e-10 41.2 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase TaqI_C PF12950.7 gi|433593167|ref|YP_007282653.1| - 4.1e-05 23.6 0.0 0.00012 22.2 0.0 1.8 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Eco57I PF07669.11 gi|433593167|ref|YP_007282653.1| - 0.0016 18.9 0.0 0.0048 17.4 0.0 1.8 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|433593167|ref|YP_007282653.1| - 0.0041 16.8 0.0 0.011 15.4 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|433593167|ref|YP_007282653.1| - 0.0042 16.6 0.0 3.8 7.0 0.0 3.3 3 0 0 3 3 3 1 Methyltransferase small domain DUF35_N PF12172.8 gi|433593167|ref|YP_007282653.1| - 0.057 13.3 0.4 0.15 12.0 0.4 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DDE_Tnp_1 PF01609.21 gi|433593169|ref|YP_007282655.1| - 3.2e-10 40.0 3.3 4.9e-10 39.4 3.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593169|ref|YP_007282655.1| - 0.17 11.9 0.5 0.48 10.5 0.3 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) AAA_22 PF13401.6 gi|433593170|ref|YP_007282656.1| - 1e-09 38.8 0.0 1.2e-08 35.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433593170|ref|YP_007282656.1| - 1.6e-09 38.4 2.7 1.8e-08 34.9 0.2 2.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|433593170|ref|YP_007282656.1| - 4.8e-07 30.0 3.9 0.00067 19.9 1.2 2.6 2 0 0 2 2 2 2 AAA C-terminal domain AAA_18 PF13238.6 gi|433593170|ref|YP_007282656.1| - 1.3e-05 25.8 0.0 7.7e-05 23.2 0.0 2.2 1 1 2 3 3 3 1 AAA domain Penicillinase_R PF03965.16 gi|433593170|ref|YP_007282656.1| - 3.6e-05 24.1 0.0 8.3e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Penicillinase repressor AAA_5 PF07728.14 gi|433593170|ref|YP_007282656.1| - 0.00015 21.7 0.0 0.00065 19.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|433593170|ref|YP_007282656.1| - 0.0004 20.4 0.5 0.012 15.5 0.0 2.8 2 1 1 3 3 3 1 NTPase AAA PF00004.29 gi|433593170|ref|YP_007282656.1| - 0.00087 19.7 0.0 0.012 16.1 0.0 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|433593170|ref|YP_007282656.1| - 0.0053 16.9 0.4 0.53 10.4 0.0 3.0 2 2 1 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|433593170|ref|YP_007282656.1| - 0.0069 16.4 0.0 0.017 15.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF4194 PF13835.6 gi|433593170|ref|YP_007282656.1| - 0.0094 15.7 0.0 0.022 14.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4194) Cdc6_C PF09079.11 gi|433593170|ref|YP_007282656.1| - 0.012 15.6 0.3 0.044 13.8 0.2 2.0 2 1 0 2 2 1 0 CDC6, C terminal winged helix domain NB-ARC PF00931.22 gi|433593170|ref|YP_007282656.1| - 0.014 14.6 0.0 0.03 13.5 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain ATPase_2 PF01637.18 gi|433593170|ref|YP_007282656.1| - 0.015 15.2 0.0 0.11 12.4 0.0 2.1 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|433593170|ref|YP_007282656.1| - 0.016 14.5 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|433593170|ref|YP_007282656.1| - 0.019 15.3 0.0 0.056 13.8 0.0 1.8 1 1 1 2 2 1 0 RNA helicase PRK PF00485.18 gi|433593170|ref|YP_007282656.1| - 0.02 14.7 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|433593170|ref|YP_007282656.1| - 0.045 13.7 0.1 0.1 12.5 0.0 1.6 2 0 0 2 2 2 0 NACHT domain DUF2791 PF10923.8 gi|433593170|ref|YP_007282656.1| - 0.048 12.5 0.0 0.084 11.7 0.0 1.3 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) AAA_30 PF13604.6 gi|433593170|ref|YP_007282656.1| - 0.08 12.7 0.7 0.29 10.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|433593170|ref|YP_007282656.1| - 0.093 12.5 0.0 0.26 11.0 0.0 1.9 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain RsgA_GTPase PF03193.16 gi|433593170|ref|YP_007282656.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase SRAP PF02586.14 gi|433593171|ref|YP_007282657.1| - 8.1e-63 211.9 0.0 9.2e-63 211.7 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) VP9 PF09625.10 gi|433593172|ref|YP_007282658.1| - 0.01 16.0 0.2 0.033 14.3 0.0 1.9 2 0 0 2 2 2 0 VP9 protein BET PF17035.5 gi|433593172|ref|YP_007282658.1| - 0.017 15.3 0.6 0.071 13.3 0.1 2.2 2 0 0 2 2 2 0 Bromodomain extra-terminal - transcription regulation Phage_holin_6_1 PF09682.10 gi|433593172|ref|YP_007282658.1| - 0.069 13.6 0.3 0.14 12.6 0.3 1.4 1 0 0 1 1 1 0 Bacteriophage holin of superfamily 6 (Holin_LLH) MutL_C PF08676.11 gi|433593175|ref|YP_007282661.1| - 0.061 13.1 0.1 0.076 12.8 0.1 1.1 1 0 0 1 1 1 0 MutL C terminal dimerisation domain CorA PF01544.18 gi|433593175|ref|YP_007282661.1| - 0.09 12.1 0.8 0.1 11.9 0.8 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein PSK_trans_fac PF07704.11 gi|433593175|ref|YP_007282661.1| - 0.88 10.4 7.7 0.25 12.1 1.3 2.0 1 1 0 2 2 2 0 Rv0623-like transcription factor Cdc6_C PF09079.11 gi|433593176|ref|YP_007282662.1| - 4e-18 65.2 0.0 8.8e-18 64.1 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|433593176|ref|YP_007282662.1| - 1.4e-11 44.8 0.1 4.7e-11 43.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433593176|ref|YP_007282662.1| - 1.4e-09 38.6 1.9 3.7e-09 37.2 0.2 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|433593176|ref|YP_007282662.1| - 2.3e-06 28.1 0.2 8.3e-06 26.3 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|433593176|ref|YP_007282662.1| - 1.5e-05 24.3 0.0 3e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|433593176|ref|YP_007282662.1| - 7.4e-05 22.5 0.2 0.0002 21.1 0.1 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.12 gi|433593176|ref|YP_007282662.1| - 7.9e-05 22.6 0.0 0.00013 21.9 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|433593176|ref|YP_007282662.1| - 0.001 19.0 0.1 0.0042 17.1 0.0 2.1 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.6 gi|433593176|ref|YP_007282662.1| - 0.0016 18.6 0.0 0.0047 17.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|433593176|ref|YP_007282662.1| - 0.0032 17.4 0.7 0.011 15.6 0.0 2.1 3 0 0 3 3 2 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|433593176|ref|YP_007282662.1| - 0.0037 16.7 0.0 0.0082 15.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein RNA_helicase PF00910.22 gi|433593176|ref|YP_007282662.1| - 0.015 15.6 0.0 0.052 14.0 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Rad51 PF08423.11 gi|433593176|ref|YP_007282662.1| - 0.018 14.3 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Rad51 AAA_7 PF12775.7 gi|433593176|ref|YP_007282662.1| - 0.022 14.3 0.1 0.054 13.0 0.1 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_32 PF13654.6 gi|433593176|ref|YP_007282662.1| - 0.023 13.5 2.4 1.3 7.7 1.2 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|433593176|ref|YP_007282662.1| - 0.047 14.2 0.4 0.13 12.8 0.4 2.0 1 1 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 gi|433593176|ref|YP_007282662.1| - 0.065 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_assoc_2 PF16193.5 gi|433593176|ref|YP_007282662.1| - 0.066 13.6 0.5 0.2 12.0 0.3 1.9 1 1 0 1 1 1 0 AAA C-terminal domain TsaE PF02367.17 gi|433593176|ref|YP_007282662.1| - 0.1 12.6 0.0 0.49 10.4 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|433593176|ref|YP_007282662.1| - 0.11 11.9 0.4 10 5.5 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein RFX_DNA_binding PF02257.15 gi|433593176|ref|YP_007282662.1| - 0.12 13.1 0.0 0.25 12.0 0.0 1.5 1 0 0 1 1 1 0 RFX DNA-binding domain KAP_NTPase PF07693.14 gi|433593176|ref|YP_007282662.1| - 0.26 10.5 2.8 0.71 9.0 0.9 2.2 2 1 0 2 2 2 0 KAP family P-loop domain DEAD PF00270.29 gi|433593176|ref|YP_007282662.1| - 0.42 10.3 3.3 8.9 6.0 0.1 2.6 2 1 0 3 3 3 0 DEAD/DEAH box helicase CSTF2_hinge PF14327.6 gi|433593177|ref|YP_007282663.1| - 0.11 12.9 0.0 0.18 12.2 0.0 1.2 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 MarR_2 PF12802.7 gi|433593178|ref|YP_007282664.1| - 2e-15 56.4 1.7 1.5e-08 34.3 0.6 2.7 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|433593178|ref|YP_007282664.1| - 2.1e-09 37.1 0.3 0.00078 19.3 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|433593178|ref|YP_007282664.1| - 2.7e-09 36.6 0.1 0.0013 18.4 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain HTH_24 PF13412.6 gi|433593178|ref|YP_007282664.1| - 3.6e-09 36.0 0.1 0.0024 17.4 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|433593178|ref|YP_007282664.1| - 1.8e-08 34.2 0.0 0.0032 17.4 0.1 2.5 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.6 gi|433593178|ref|YP_007282664.1| - 7.7e-08 32.7 1.3 4.8e-07 30.2 0.4 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|433593178|ref|YP_007282664.1| - 2.6e-07 30.9 0.0 0.0082 16.5 0.0 2.6 2 0 0 2 2 2 2 Transcriptional regulator HTH_29 PF13551.6 gi|433593178|ref|YP_007282664.1| - 4.1e-07 29.9 0.2 0.026 14.5 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn helix HTH_20 PF12840.7 gi|433593178|ref|YP_007282664.1| - 1.6e-06 28.1 0.4 0.027 14.5 0.3 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433593178|ref|YP_007282664.1| - 3e-06 27.1 0.0 0.0075 16.2 0.0 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|433593178|ref|YP_007282664.1| - 4.3e-06 26.8 0.1 0.017 15.3 0.0 2.9 3 0 0 3 3 2 2 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433593178|ref|YP_007282664.1| - 7.8e-06 25.6 0.0 0.073 12.9 0.1 2.8 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|433593178|ref|YP_007282664.1| - 0.00028 20.7 0.0 0.18 11.7 0.1 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|433593178|ref|YP_007282664.1| - 0.0009 19.6 0.0 1.3 9.4 0.0 2.4 2 0 0 2 2 2 2 Penicillinase repressor GntR PF00392.21 gi|433593178|ref|YP_007282664.1| - 0.00092 18.8 0.0 0.8 9.4 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_38 PF13936.6 gi|433593178|ref|YP_007282664.1| - 0.0013 18.5 1.2 0.22 11.3 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain Crp PF00325.20 gi|433593178|ref|YP_007282664.1| - 0.0085 15.7 0.8 0.1 12.2 0.2 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family GerE PF00196.19 gi|433593178|ref|YP_007282664.1| - 0.012 15.2 0.0 5 6.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Tnp_Tc3_1 PF11427.8 gi|433593178|ref|YP_007282664.1| - 0.013 15.3 0.3 13 5.7 0.0 3.2 3 0 0 3 3 3 0 Tc3 transposase HTH_47 PF16221.5 gi|433593178|ref|YP_007282664.1| - 0.018 14.6 0.0 4.3 7.0 0.0 2.8 3 0 0 3 3 3 0 winged helix-turn-helix LZ_Tnp_IS481 PF13011.6 gi|433593178|ref|YP_007282664.1| - 0.032 14.7 0.0 0.071 13.7 0.0 1.6 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 RPA_C PF08784.11 gi|433593178|ref|YP_007282664.1| - 0.084 13.5 0.0 0.22 12.2 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal PaaX PF07848.12 gi|433593178|ref|YP_007282664.1| - 0.092 13.0 0.0 0.35 11.1 0.0 1.9 1 0 0 1 1 1 0 PaaX-like protein UPF0122 PF04297.14 gi|433593178|ref|YP_007282664.1| - 0.095 13.0 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_41 PF14502.6 gi|433593178|ref|YP_007282664.1| - 0.1 12.3 0.0 0.36 10.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|433593178|ref|YP_007282664.1| - 0.18 11.8 0.2 11 6.0 0.0 3.1 3 0 0 3 3 3 0 HTH domain AAA_14 PF13173.6 gi|433593179|ref|YP_007282665.1| - 2.1e-07 31.1 0.0 1.4e-06 28.3 0.0 2.3 3 0 0 3 3 3 1 AAA domain RNA_helicase PF00910.22 gi|433593179|ref|YP_007282665.1| - 0.00012 22.4 0.1 0.00087 19.7 0.0 2.4 2 1 0 2 2 2 1 RNA helicase ATPase_2 PF01637.18 gi|433593179|ref|YP_007282665.1| - 0.00061 19.8 0.0 0.0015 18.5 0.0 1.6 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|433593179|ref|YP_007282665.1| - 0.0023 17.7 0.0 0.0046 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433593179|ref|YP_007282665.1| - 0.0038 17.6 0.3 0.013 15.9 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|433593179|ref|YP_007282665.1| - 0.0057 16.9 0.3 0.048 13.9 0.2 2.5 1 1 1 2 2 2 1 AAA domain HTH_23 PF13384.6 gi|433593179|ref|YP_007282665.1| - 0.0065 16.2 0.0 0.022 14.6 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain AAA_25 PF13481.6 gi|433593179|ref|YP_007282665.1| - 0.0074 15.9 0.0 0.016 14.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|433593179|ref|YP_007282665.1| - 0.013 16.0 0.0 0.026 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|433593179|ref|YP_007282665.1| - 0.019 14.1 0.0 0.033 13.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|433593179|ref|YP_007282665.1| - 0.022 14.5 0.0 0.3 10.8 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|433593179|ref|YP_007282665.1| - 0.028 14.3 0.1 0.056 13.4 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|433593179|ref|YP_007282665.1| - 0.033 14.6 0.0 0.077 13.4 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|433593179|ref|YP_007282665.1| - 0.035 14.2 0.0 0.075 13.1 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Sigma70_r4_2 PF08281.12 gi|433593179|ref|YP_007282665.1| - 0.061 13.0 0.0 0.46 10.2 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_29 PF13551.6 gi|433593179|ref|YP_007282665.1| - 0.061 13.3 0.1 0.47 10.5 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn helix TsaE PF02367.17 gi|433593179|ref|YP_007282665.1| - 0.069 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Fumble PF03630.14 gi|433593179|ref|YP_007282665.1| - 0.15 11.2 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 Fumble Sigma54_activat PF00158.26 gi|433593179|ref|YP_007282665.1| - 0.17 11.6 0.1 16 5.1 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|433593179|ref|YP_007282665.1| - 0.18 12.3 0.0 0.36 11.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Lactamase_B_2 PF12706.7 gi|433593180|ref|YP_007282666.1| - 1.1e-08 34.9 0.7 1.1e-08 34.9 0.7 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|433593180|ref|YP_007282666.1| - 1.6e-08 34.8 3.3 4e-08 33.5 3.3 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RE_HpaII PF09561.10 gi|433593180|ref|YP_007282666.1| - 0.012 15.0 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 HpaII restriction endonuclease SAPS PF04499.15 gi|433593180|ref|YP_007282666.1| - 6.9 5.3 7.6 10 4.8 7.6 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Piwi PF02171.17 gi|433593181|ref|YP_007282667.1| - 4.1e-12 46.0 0.0 1.1e-08 34.7 0.0 2.4 3 0 0 3 3 3 2 Piwi domain PLDc_2 PF13091.6 gi|433593182|ref|YP_007282668.1| - 2.3e-06 27.5 0.0 4.9e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 PLD-like domain ResIII PF04851.15 gi|433593185|ref|YP_007282671.1| - 4.6e-23 82.1 0.0 2.2e-22 79.8 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|433593185|ref|YP_007282671.1| - 1.8e-08 34.4 0.0 3.4e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|433593185|ref|YP_007282671.1| - 9.4e-07 29.2 0.1 1.1e-05 25.7 0.0 2.6 2 1 0 2 2 2 1 Helicase conserved C-terminal domain SWI2_SNF2 PF18766.1 gi|433593185|ref|YP_007282671.1| - 0.00029 20.6 0.0 0.00069 19.3 0.0 1.6 1 0 0 1 1 1 1 SWI2/SNF2 ATPase ERCC3_RAD25_C PF16203.5 gi|433593185|ref|YP_007282671.1| - 0.0011 18.3 0.1 0.0033 16.7 0.0 1.7 2 0 0 2 2 2 1 ERCC3/RAD25/XPB C-terminal helicase Mod_r PF07200.13 gi|433593185|ref|YP_007282671.1| - 0.08 13.0 3.3 0.13 12.3 1.8 2.1 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Sec8_exocyst PF04048.14 gi|433593185|ref|YP_007282671.1| - 0.15 12.0 0.1 0.37 10.7 0.1 1.6 1 0 0 1 1 1 0 Sec8 exocyst complex component specific domain Peptidase_M78 PF06114.13 gi|433593186|ref|YP_007282672.1| - 0.00058 19.8 0.1 0.001 19.0 0.1 1.3 1 0 0 1 1 1 1 IrrE N-terminal-like domain SprT-like PF10263.9 gi|433593186|ref|YP_007282672.1| - 0.01 15.7 0.1 0.033 14.0 0.1 1.8 2 0 0 2 2 2 0 SprT-like family DUF2268 PF10026.9 gi|433593186|ref|YP_007282672.1| - 0.046 13.3 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Aminopep PF10023.9 gi|433593186|ref|YP_007282672.1| - 0.046 13.1 0.0 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative aminopeptidase ACP53EA PF06313.11 gi|433593188|ref|YP_007282674.1| - 0.02 15.0 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 Drosophila ACP53EA protein DUF993 PF06187.11 gi|433593189|ref|YP_007282675.1| - 0.005 15.8 0.1 0.0075 15.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF993) DUF402 PF04167.13 gi|433593189|ref|YP_007282675.1| - 0.084 13.1 1.1 0.12 12.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF402) Pentapeptide PF00805.22 gi|433593191|ref|YP_007282677.1| - 7.7e-81 265.1 73.2 5.6e-11 41.9 2.0 11.4 6 2 4 11 11 11 11 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|433593191|ref|YP_007282677.1| - 2.4e-54 181.4 4.0 4e-10 39.7 0.2 6.6 1 1 6 7 7 7 7 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|433593191|ref|YP_007282677.1| - 3.1e-40 136.1 38.2 4.1e-07 30.0 0.3 10.8 3 3 5 10 10 10 10 Pentapeptide repeats (9 copies) ExoD PF06055.12 gi|433593191|ref|YP_007282677.1| - 0.001 18.5 0.1 0.0018 17.7 0.1 1.3 1 0 0 1 1 1 1 Exopolysaccharide synthesis, ExoD OprD PF03573.13 gi|433593191|ref|YP_007282677.1| - 0.012 14.7 2.4 0.34 9.9 0.0 3.4 2 1 1 4 4 4 0 outer membrane porin, OprD family DUF5003 PF16394.5 gi|433593191|ref|YP_007282677.1| - 0.22 10.6 0.1 0.35 10.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5003) DNA_ligase_ZBD PF03119.16 gi|433593192|ref|YP_007282678.1| - 0.00093 19.2 0.2 0.0019 18.2 0.2 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain N6_N4_Mtase PF01555.18 gi|433593192|ref|YP_007282678.1| - 0.0012 18.6 0.0 0.68 9.6 0.0 2.3 2 0 0 2 2 2 2 DNA methylase IBR PF01485.21 gi|433593192|ref|YP_007282678.1| - 0.54 10.5 6.7 0.21 11.9 2.7 2.2 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain Mrr_cat PF04471.12 gi|433593193|ref|YP_007282679.1| - 1.7e-28 98.9 0.0 3e-28 98.1 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|433593193|ref|YP_007282679.1| - 0.009 15.9 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease DZR PF12773.7 gi|433593193|ref|YP_007282679.1| - 0.063 13.3 0.3 0.063 13.3 0.3 1.8 2 0 0 2 2 2 0 Double zinc ribbon Siva PF05458.12 gi|433593193|ref|YP_007282679.1| - 0.07 12.8 1.7 0.11 12.2 1.7 1.3 1 0 0 1 1 1 0 Cd27 binding protein (Siva) Zn_Tnp_IS1595 PF12760.7 gi|433593193|ref|YP_007282679.1| - 0.12 12.4 5.9 2.6 8.1 0.1 3.5 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|433593193|ref|YP_007282679.1| - 3.7 7.4 7.3 0.93 9.3 3.8 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_5 PF14634.6 gi|433593193|ref|YP_007282679.1| - 4.6 7.3 8.0 62 3.7 7.0 2.4 2 0 0 2 2 2 0 zinc-RING finger domain zf-ribbon_3 PF13248.6 gi|433593193|ref|YP_007282679.1| - 5.9 6.4 6.7 1.2 8.7 1.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Abhydrolase_1 PF00561.20 gi|433593195|ref|YP_007282681.1| - 9.6e-26 91.0 0.9 1.2e-24 87.4 0.9 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|433593195|ref|YP_007282681.1| - 2.8e-21 77.2 2.9 3.6e-21 76.8 2.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|433593195|ref|YP_007282681.1| - 2.2e-15 56.6 0.0 3e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 DLH PF01738.18 gi|433593195|ref|YP_007282681.1| - 0.00065 19.3 0.0 0.52 9.8 0.0 2.6 2 1 0 2 2 2 2 Dienelactone hydrolase family Esterase PF00756.20 gi|433593195|ref|YP_007282681.1| - 0.081 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Putative esterase HTH_10 PF04967.12 gi|433593196|ref|YP_007282682.1| - 4.5e-18 64.8 0.0 7.6e-18 64.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|433593196|ref|YP_007282682.1| - 8.9e-05 22.0 0.0 0.00017 21.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433593196|ref|YP_007282682.1| - 0.00034 20.4 0.3 0.00085 19.1 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|433593196|ref|YP_007282682.1| - 0.0024 17.5 0.0 0.0082 15.8 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|433593196|ref|YP_007282682.1| - 0.0027 17.2 0.1 0.01 15.4 0.1 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.6 gi|433593196|ref|YP_007282682.1| - 0.023 15.2 0.0 0.14 12.7 0.0 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|433593196|ref|YP_007282682.1| - 0.026 14.2 0.0 0.062 12.9 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Fe_dep_repress PF01325.19 gi|433593196|ref|YP_007282682.1| - 0.029 14.5 0.0 0.074 13.3 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.19 gi|433593196|ref|YP_007282682.1| - 0.088 12.4 0.1 1 9.0 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family Complex1_49kDa PF00346.19 gi|433593197|ref|YP_007282683.1| - 5.1e-82 275.0 0.1 2.4e-80 269.5 0.1 2.3 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|433593197|ref|YP_007282683.1| - 1.7e-36 125.5 0.2 3.3e-36 124.6 0.2 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Methyltransf_23 PF13489.6 gi|433593199|ref|YP_007282685.1| - 2e-23 83.0 0.0 2.4e-23 82.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|433593199|ref|YP_007282685.1| - 2.4e-22 79.4 0.0 1.2e-21 77.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|433593199|ref|YP_007282685.1| - 1.2e-20 73.9 0.0 2e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|433593199|ref|YP_007282685.1| - 7.1e-18 64.9 0.0 9.2e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|433593199|ref|YP_007282685.1| - 9.9e-15 54.5 0.0 1.3e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|433593199|ref|YP_007282685.1| - 4.2e-12 46.7 0.0 6.1e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|433593199|ref|YP_007282685.1| - 1.2e-05 25.0 0.0 1.8e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|433593199|ref|YP_007282685.1| - 0.00043 19.7 0.0 0.00065 19.1 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.18 gi|433593199|ref|YP_007282685.1| - 0.00075 19.2 0.0 0.0037 17.0 0.0 1.9 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|433593199|ref|YP_007282685.1| - 0.0065 16.0 0.0 0.0098 15.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Pox_MCEL PF03291.16 gi|433593199|ref|YP_007282685.1| - 0.032 13.3 0.0 0.041 13.0 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_29 PF03141.16 gi|433593199|ref|YP_007282685.1| - 0.038 12.6 0.0 0.048 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PCMT PF01135.19 gi|433593199|ref|YP_007282685.1| - 0.082 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF3784 PF12650.7 gi|433593200|ref|YP_007282686.1| - 2.1e-05 24.6 0.5 2.8e-05 24.2 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) DUF5357 PF17310.2 gi|433593200|ref|YP_007282686.1| - 0.0099 14.5 0.4 0.011 14.3 0.4 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5357) DUF973 PF06157.11 gi|433593200|ref|YP_007282686.1| - 0.016 14.3 2.2 0.017 14.2 2.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF3185 PF11381.8 gi|433593200|ref|YP_007282686.1| - 0.26 11.3 6.1 1.9 8.5 6.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3185) Amidohydro_1 PF01979.20 gi|433593201|ref|YP_007282687.1| - 3.8e-45 154.7 0.0 4.6e-45 154.4 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|433593201|ref|YP_007282687.1| - 4.7e-20 72.5 2.3 5.5e-12 45.9 0.4 2.3 2 0 0 2 2 2 2 Amidohydrolase family DUF2318 PF10080.9 gi|433593202|ref|YP_007282688.1| - 0.0075 16.4 0.1 0.0097 16.0 0.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) RPA_interact_C PF14768.6 gi|433593202|ref|YP_007282688.1| - 0.013 16.1 0.4 0.017 15.7 0.4 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DZR PF12773.7 gi|433593202|ref|YP_007282688.1| - 0.014 15.4 0.7 0.027 14.5 0.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|433593202|ref|YP_007282688.1| - 0.021 14.7 3.0 2.4 8.2 0.1 2.8 3 0 0 3 3 3 0 Nudix N-terminal GFA PF04828.14 gi|433593202|ref|YP_007282688.1| - 0.092 13.1 1.4 2.3 8.6 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DpnI PF06044.12 gi|433593202|ref|YP_007282688.1| - 0.12 12.0 0.6 0.16 11.6 0.6 1.2 1 0 0 1 1 1 0 Dam-replacing family DNA_ligase_ZBD PF03119.16 gi|433593202|ref|YP_007282688.1| - 0.28 11.2 4.3 0.9 9.6 0.5 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.6 gi|433593202|ref|YP_007282688.1| - 0.32 10.8 4.8 4.1 7.3 0.2 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|433593202|ref|YP_007282688.1| - 0.49 10.5 3.9 17 5.6 0.4 2.7 3 0 0 3 3 3 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|433593203|ref|YP_007282689.1| - 0.098 12.6 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|433593203|ref|YP_007282689.1| - 0.18 11.6 1.2 2.2 8.1 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|433593203|ref|YP_007282689.1| - 0.21 11.5 0.1 0.21 11.5 0.1 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf_C2H2_10 PF18414.1 gi|433593203|ref|YP_007282689.1| - 0.3 10.7 5.7 1.7 8.2 0.3 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF3797 PF12677.7 gi|433593203|ref|YP_007282689.1| - 1.7 8.6 5.6 2 8.4 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Cytochrom_C_2 PF01322.20 gi|433593204|ref|YP_007282690.1| - 0.18 12.7 0.1 0.22 12.4 0.1 1.3 1 0 0 1 1 1 0 Cytochrome C' NIR_SIR_ferr PF03460.17 gi|433593207|ref|YP_007282693.1| - 0.13 12.1 0.0 4.3 7.2 0.0 2.2 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain zinc_ribbon_2 PF13240.6 gi|433593209|ref|YP_007282695.1| - 0.018 14.8 1.7 0.018 14.8 1.7 2.5 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|433593209|ref|YP_007282695.1| - 1.6 9.5 7.0 7.5 7.4 0.4 2.7 2 1 1 3 3 3 0 zinc-ribbon family RNA_POL_M_15KD PF02150.16 gi|433593209|ref|YP_007282695.1| - 1.9 8.4 9.4 11 6.0 0.3 3.6 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|433593209|ref|YP_007282695.1| - 2.3 8.3 8.9 1.7 8.8 1.3 2.6 2 1 0 2 2 2 0 Double zinc ribbon Zf_RING PF16744.5 gi|433593209|ref|YP_007282695.1| - 7.1 6.8 6.6 12 6.1 0.0 3.2 4 0 0 4 4 4 0 KIAA1045 RING finger OrfB_Zn_ribbon PF07282.11 gi|433593210|ref|YP_007282696.1| - 4.1e-23 81.1 1.8 4.1e-23 81.1 1.8 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|433593210|ref|YP_007282696.1| - 1.5e-06 28.4 0.1 5.3e-06 26.7 0.0 1.9 2 0 0 2 2 2 1 Probable transposase HypA PF01155.19 gi|433593210|ref|YP_007282696.1| - 0.0067 16.4 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|433593210|ref|YP_007282696.1| - 0.55 9.8 2.4 13 5.4 2.4 2.6 1 1 0 1 1 1 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.13 gi|433593210|ref|YP_007282696.1| - 1.5 8.6 5.0 2.6 7.8 2.3 2.6 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|433593210|ref|YP_007282696.1| - 3.4 7.5 9.3 4.9 7.0 5.3 2.7 2 1 1 3 3 3 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|433593210|ref|YP_007282696.1| - 4.4 7.1 12.6 1.4 8.7 1.5 2.7 3 0 0 3 3 3 0 Rubredoxin metal binding domain TFIIB PF00382.19 gi|433593211|ref|YP_007282697.1| - 2.2e-30 104.5 2.1 1.9e-16 59.9 0.4 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433593211|ref|YP_007282697.1| - 1.9e-12 46.5 2.6 3.4e-12 45.7 2.6 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|433593211|ref|YP_007282697.1| - 0.0073 16.3 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain OrfB_Zn_ribbon PF07282.11 gi|433593211|ref|YP_007282697.1| - 0.031 14.2 1.4 0.16 12.0 1.2 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|433593211|ref|YP_007282697.1| - 0.04 14.0 1.0 0.086 12.9 1.0 1.5 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.9 gi|433593211|ref|YP_007282697.1| - 0.12 12.5 1.5 0.27 11.3 1.5 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 PEPcase PF00311.17 gi|433593212|ref|YP_007282698.1| - 1.7e-234 780.5 0.0 2.3e-234 780.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|433593212|ref|YP_007282698.1| - 0.0004 19.0 0.0 0.00079 18.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase DUF4070 PF13282.6 gi|433593212|ref|YP_007282698.1| - 0.099 12.8 0.0 3.3 7.8 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4070) Peptidase_S9 PF00326.21 gi|433593213|ref|YP_007282699.1| - 4.7e-17 62.2 0.1 7.8e-17 61.5 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|433593213|ref|YP_007282699.1| - 1.1e-07 31.6 0.7 0.007 16.3 0.1 5.0 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|433593213|ref|YP_007282699.1| - 0.00055 18.8 0.0 2 7.1 0.0 3.6 3 1 0 3 3 3 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region DLH PF01738.18 gi|433593213|ref|YP_007282699.1| - 0.0011 18.6 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|433593213|ref|YP_007282699.1| - 0.0025 17.1 0.0 0.0041 16.4 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 4HBT_2 PF13279.6 gi|433593214|ref|YP_007282700.1| - 4.1e-16 59.6 0.0 5e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|433593214|ref|YP_007282700.1| - 6e-15 55.4 0.1 9e-15 54.8 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|433593214|ref|YP_007282700.1| - 2.2e-08 33.7 0.0 3.3e-08 33.1 0.0 1.4 1 1 0 1 1 1 1 Acyl-ACP thioesterase Rhodanese PF00581.20 gi|433593214|ref|YP_007282700.1| - 0.003 18.0 0.0 1.9 9.0 0.0 2.1 1 1 1 2 2 2 2 Rhodanese-like domain LUD_dom PF02589.15 gi|433593215|ref|YP_007282701.1| - 2.1e-44 151.5 0.1 3.3e-44 150.9 0.1 1.3 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|433593215|ref|YP_007282701.1| - 1.3e-08 35.1 5.1 3.1e-08 33.9 5.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|433593215|ref|YP_007282701.1| - 3.1e-07 30.4 3.3 0.0012 18.9 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|433593215|ref|YP_007282701.1| - 4.4e-07 30.3 3.8 8.6e-07 29.4 3.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|433593215|ref|YP_007282701.1| - 9.9e-07 28.8 3.1 2.9e-06 27.3 3.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|433593215|ref|YP_007282701.1| - 2.2e-05 25.0 7.0 6.1e-05 23.5 7.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|433593215|ref|YP_007282701.1| - 0.00032 20.4 13.0 0.0011 18.6 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|433593215|ref|YP_007282701.1| - 0.00042 20.4 9.7 0.0035 17.4 9.7 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|433593215|ref|YP_007282701.1| - 0.015 15.4 2.3 0.015 15.4 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|433593215|ref|YP_007282701.1| - 0.022 14.5 3.9 0.03 14.1 0.2 2.6 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.7 gi|433593215|ref|YP_007282701.1| - 0.035 14.2 14.6 0.15 12.2 3.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|433593215|ref|YP_007282701.1| - 0.059 13.9 14.4 0.16 12.6 3.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|433593215|ref|YP_007282701.1| - 0.072 13.9 7.7 0.074 13.9 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|433593215|ref|YP_007282701.1| - 0.14 12.3 10.2 0.098 12.9 1.6 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|433593215|ref|YP_007282701.1| - 0.15 13.1 17.5 0.069 14.1 5.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|433593215|ref|YP_007282701.1| - 7.7 7.5 15.4 4 8.5 4.0 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain LUD_dom PF02589.15 gi|433593216|ref|YP_007282702.1| - 1.6e-14 54.1 0.0 1.9e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 LUD domain DDE_Tnp_1 PF01609.21 gi|433593217|ref|YP_007282703.1| - 2.6e-17 63.2 0.0 4.1e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593217|ref|YP_007282703.1| - 9.2e-05 22.4 0.0 0.00018 21.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) OrfB_IS605 PF01385.19 gi|433593218|ref|YP_007282704.1| - 4.8e-26 91.3 0.0 8.4e-26 90.6 0.0 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|433593218|ref|YP_007282704.1| - 2.3e-19 69.1 0.9 4.6e-19 68.1 0.9 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain mRNA_stabil PF13929.6 gi|433593218|ref|YP_007282704.1| - 0.25 10.3 0.0 0.98 8.3 0.0 1.8 2 0 0 2 2 2 0 mRNA stabilisation SNF PF00209.18 gi|433593220|ref|YP_007282706.1| - 0.0044 15.8 0.7 0.0051 15.6 0.7 1.0 1 0 0 1 1 1 1 Sodium:neurotransmitter symporter family Phage_holin_3_6 PF07332.11 gi|433593220|ref|YP_007282706.1| - 0.0055 16.7 1.4 0.0066 16.5 1.4 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III HalOD1 PF18545.1 gi|433593221|ref|YP_007282707.1| - 4.9e-07 29.9 1.5 6.2e-07 29.6 1.5 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF2250 PF10007.9 gi|433593222|ref|YP_007282708.1| - 4.8e-05 23.4 0.0 0.00028 20.9 0.0 1.8 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Mrr_N PF14338.6 gi|433593222|ref|YP_007282708.1| - 0.001 19.1 0.0 0.0013 18.8 0.0 1.2 1 0 0 1 1 1 1 Mrr N-terminal domain MarR_2 PF12802.7 gi|433593222|ref|YP_007282708.1| - 0.014 15.3 0.0 0.017 15.0 0.0 1.3 1 1 0 1 1 1 0 MarR family DUF4423 PF14394.6 gi|433593222|ref|YP_007282708.1| - 0.12 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_24 PF13412.6 gi|433593222|ref|YP_007282708.1| - 0.16 11.5 0.0 0.59 9.7 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|433593224|ref|YP_007282710.1| - 2.9e-10 39.9 0.2 1.1e-09 38.0 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|433593224|ref|YP_007282710.1| - 2.9e-05 24.0 0.2 7.9e-05 22.6 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|433593224|ref|YP_007282710.1| - 3.3e-05 23.4 0.0 0.00044 19.7 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|433593224|ref|YP_007282710.1| - 0.00019 21.2 0.0 0.00047 20.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|433593224|ref|YP_007282710.1| - 0.00028 20.7 0.7 0.001 18.9 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|433593224|ref|YP_007282710.1| - 0.0004 20.1 0.2 0.0057 16.4 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain F-112 PF09645.10 gi|433593224|ref|YP_007282710.1| - 0.00068 19.7 0.0 0.93 9.6 0.0 2.2 2 0 0 2 2 2 2 F-112 protein HTH_27 PF13463.6 gi|433593224|ref|YP_007282710.1| - 0.018 15.5 0.0 0.042 14.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain RP-C PF03428.13 gi|433593224|ref|YP_007282710.1| - 0.02 14.6 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain Penicillinase_R PF03965.16 gi|433593224|ref|YP_007282710.1| - 0.022 15.1 0.0 0.042 14.2 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor PadR PF03551.14 gi|433593224|ref|YP_007282710.1| - 0.099 12.6 0.1 0.4 10.7 0.0 2.2 2 1 1 3 3 3 0 Transcriptional regulator PadR-like family CdiI_2 PF18593.1 gi|433593225|ref|YP_007282711.1| - 0.00017 22.2 11.2 1.8 9.3 0.0 6.2 3 1 4 7 7 7 2 CdiI immunity protein NB-ARC PF00931.22 gi|433593225|ref|YP_007282711.1| - 0.051 12.8 0.0 5.8 6.0 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain Spc7_C2 PF15577.6 gi|433593225|ref|YP_007282711.1| - 0.11 12.7 0.1 0.48 10.5 0.0 2.1 2 0 0 2 2 2 0 Spc7_C2 RPN6_N PF18055.1 gi|433593225|ref|YP_007282711.1| - 0.11 12.9 0.2 0.72 10.2 0.0 2.4 1 1 1 2 2 2 0 26S proteasome regulatory subunit RPN6 N-terminal domain DUF2791 PF10923.8 gi|433593225|ref|YP_007282711.1| - 0.43 9.4 2.9 1.1 8.0 0.2 2.8 3 0 0 3 3 3 0 P-loop Domain of unknown function (DUF2791) Cob_adeno_trans PF01923.18 gi|433593225|ref|YP_007282711.1| - 0.61 10.2 3.7 0.67 10.1 0.6 2.6 2 1 0 2 2 2 0 Cobalamin adenosyltransferase HEAT_2 PF13646.6 gi|433593225|ref|YP_007282711.1| - 3.5 8.1 15.8 0.027 14.8 2.1 4.2 5 0 0 5 5 5 0 HEAT repeats AAA_16 PF13191.6 gi|433593225|ref|YP_007282711.1| - 9.8 6.5 21.4 0.68 10.3 4.0 5.9 4 3 1 5 5 5 0 AAA ATPase domain MarR_2 PF12802.7 gi|433593226|ref|YP_007282712.1| - 0.067 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 MarR family SWIM PF04434.17 gi|433593229|ref|YP_007282715.1| - 0.0036 16.9 0.1 0.008 15.8 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger Rubredoxin_2 PF18073.1 gi|433593229|ref|YP_007282715.1| - 0.029 14.1 1.6 0.055 13.2 1.6 1.5 1 0 0 1 1 1 0 Rubredoxin metal binding domain DUF4379 PF14311.6 gi|433593229|ref|YP_007282715.1| - 0.045 14.1 1.1 1.3 9.5 0.1 2.3 2 0 0 2 2 2 0 Probable Zinc-ribbon domain CxC4 PF18717.1 gi|433593229|ref|YP_007282715.1| - 0.16 11.8 1.5 2.9 7.8 0.2 2.2 2 0 0 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn-ribbon_8 PF09723.10 gi|433593229|ref|YP_007282715.1| - 7.4 6.8 7.4 2 8.6 1.4 2.4 2 0 0 2 2 2 0 Zinc ribbon domain KAP_NTPase PF07693.14 gi|433593230|ref|YP_007282716.1| - 3.1e-24 85.8 0.0 1.4e-23 83.6 0.0 2.1 1 1 0 1 1 1 1 KAP family P-loop domain ABC_tran PF00005.27 gi|433593230|ref|YP_007282716.1| - 0.00017 22.1 1.4 0.091 13.3 0.0 3.7 4 0 0 4 4 4 1 ABC transporter AAA_16 PF13191.6 gi|433593230|ref|YP_007282716.1| - 0.00059 20.3 1.1 0.026 14.9 0.0 4.0 4 2 0 4 4 4 1 AAA ATPase domain AAA_22 PF13401.6 gi|433593230|ref|YP_007282716.1| - 0.0027 18.0 0.3 0.12 12.6 0.0 3.6 3 1 0 3 3 3 1 AAA domain Cnd1 PF12717.7 gi|433593230|ref|YP_007282716.1| - 0.024 14.7 0.2 1.1 9.2 0.1 3.6 2 1 1 3 3 3 0 non-SMC mitotic condensation complex subunit 1 AAA_18 PF13238.6 gi|433593230|ref|YP_007282716.1| - 0.065 13.8 0.2 6.5 7.3 0.0 3.8 3 0 0 3 3 3 0 AAA domain DUF87 PF01935.17 gi|433593230|ref|YP_007282716.1| - 0.62 10.1 8.4 27 4.8 0.4 4.8 3 1 0 3 3 3 0 Helicase HerA, central domain HNH_repeat PF18780.1 gi|433593231|ref|YP_007282717.1| - 6.7e-06 25.8 0.0 0.055 13.3 0.0 2.4 2 0 0 2 2 2 2 Homing endonuclease repeat LexA_DNA_bind PF01726.16 gi|433593231|ref|YP_007282717.1| - 0.0005 19.8 0.1 0.12 12.2 0.0 2.5 2 1 0 2 2 2 2 LexA DNA binding domain Sigma70_r3 PF04539.16 gi|433593231|ref|YP_007282717.1| - 0.0008 19.5 0.1 0.28 11.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-70 region 3 Actin_micro PF17003.5 gi|433593231|ref|YP_007282717.1| - 0.012 14.8 0.0 0.012 14.8 0.0 1.1 1 0 0 1 1 1 0 Putative actin-like family Zn-ribbon_8 PF09723.10 gi|433593231|ref|YP_007282717.1| - 0.017 15.2 0.2 0.033 14.3 0.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Desulfoferrod_N PF06397.12 gi|433593231|ref|YP_007282717.1| - 0.11 12.2 0.1 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain tRNA_anti-codon PF01336.25 gi|433593232|ref|YP_007282718.1| - 7.8e-06 25.8 0.0 1.5e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain LppA PF16708.5 gi|433593232|ref|YP_007282718.1| - 0.22 11.4 4.6 0.46 10.4 4.6 1.5 1 0 0 1 1 1 0 Lipoprotein confined to pathogenic Mycobacterium PemK_toxin PF02452.17 gi|433593234|ref|YP_007282720.1| - 0.018 15.4 0.0 0.022 15.2 0.0 1.2 1 0 0 1 1 1 0 PemK-like, MazF-like toxin of type II toxin-antitoxin system MarR_2 PF12802.7 gi|433593235|ref|YP_007282721.1| - 1.9e-06 27.6 0.0 2.8e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|433593235|ref|YP_007282721.1| - 0.00012 22.1 0.2 0.00014 21.9 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|433593235|ref|YP_007282721.1| - 0.00034 20.9 0.1 0.00083 19.7 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|433593235|ref|YP_007282721.1| - 0.00045 20.4 0.0 0.0063 16.7 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|433593235|ref|YP_007282721.1| - 0.0011 19.4 0.1 0.002 18.6 0.1 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|433593235|ref|YP_007282721.1| - 0.0012 18.7 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|433593235|ref|YP_007282721.1| - 0.0013 18.6 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|433593235|ref|YP_007282721.1| - 0.0051 16.7 0.1 0.0081 16.1 0.1 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|433593235|ref|YP_007282721.1| - 0.013 15.4 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|433593235|ref|YP_007282721.1| - 0.017 14.9 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|433593235|ref|YP_007282721.1| - 0.018 14.6 0.1 0.036 13.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|433593235|ref|YP_007282721.1| - 0.018 15.0 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TFIIE_alpha PF02002.17 gi|433593235|ref|YP_007282721.1| - 0.038 13.8 0.4 0.05 13.5 0.4 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_36 PF13730.6 gi|433593235|ref|YP_007282721.1| - 0.085 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|433593235|ref|YP_007282721.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Glyco_tranf_2_4 PF13704.6 gi|433593235|ref|YP_007282721.1| - 2.2 8.8 7.3 0.76 10.3 0.3 2.7 1 1 2 3 3 3 0 Glycosyl transferase family 2 PadR PF03551.14 gi|433593236|ref|YP_007282722.1| - 5.2e-17 61.6 0.9 6.7e-17 61.2 0.9 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|433593236|ref|YP_007282722.1| - 0.0052 16.7 0.1 0.0071 16.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|433593236|ref|YP_007282722.1| - 0.054 13.3 0.0 0.084 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.7 gi|433593236|ref|YP_007282722.1| - 0.083 12.8 0.7 0.55 10.2 0.1 2.2 2 1 0 2 2 2 0 MarR family DUF4364 PF14277.6 gi|433593236|ref|YP_007282722.1| - 0.14 11.9 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) UPF0175 PF03683.13 gi|433593237|ref|YP_007282723.1| - 2.3e-11 43.2 0.0 2.7e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) ParE_toxin PF05016.15 gi|433593238|ref|YP_007282724.1| - 0.0016 19.0 0.0 0.0025 18.4 0.0 1.3 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE RHH_1 PF01402.21 gi|433593239|ref|YP_007282725.1| - 5.5e-05 22.9 0.1 9.9e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|433593239|ref|YP_007282725.1| - 0.082 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system ATG16 PF08614.11 gi|433593240|ref|YP_007282726.1| - 0.0016 18.7 6.8 0.0016 18.7 6.8 2.1 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) FlgN PF05130.12 gi|433593240|ref|YP_007282726.1| - 0.003 18.1 2.0 0.0072 16.8 2.0 1.6 1 0 0 1 1 1 1 FlgN protein Phage_GP20 PF06810.11 gi|433593240|ref|YP_007282726.1| - 0.0031 17.3 3.8 0.0061 16.4 3.8 1.4 1 0 0 1 1 1 1 Phage minor structural protein GP20 SlyX PF04102.12 gi|433593240|ref|YP_007282726.1| - 0.0067 17.0 4.3 0.083 13.5 3.5 2.7 3 0 0 3 3 2 1 SlyX KASH_CCD PF14662.6 gi|433593240|ref|YP_007282726.1| - 0.016 15.1 3.8 0.028 14.2 3.8 1.3 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH ZapB PF06005.12 gi|433593240|ref|YP_007282726.1| - 0.017 15.6 4.8 0.043 14.3 4.8 1.6 1 0 0 1 1 1 0 Cell division protein ZapB DUF3450 PF11932.8 gi|433593240|ref|YP_007282726.1| - 0.033 13.5 0.9 0.061 12.6 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF3972 PF13118.6 gi|433593240|ref|YP_007282726.1| - 0.043 14.2 1.2 0.13 12.7 1.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3972) FlaC_arch PF05377.11 gi|433593240|ref|YP_007282726.1| - 0.053 13.9 1.1 0.11 13.0 1.1 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) UPF0242 PF06785.11 gi|433593240|ref|YP_007282726.1| - 0.079 13.1 4.9 0.14 12.3 4.9 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FlxA PF14282.6 gi|433593240|ref|YP_007282726.1| - 0.084 12.9 0.5 0.17 11.9 0.5 1.6 1 0 0 1 1 1 0 FlxA-like protein Golgin_A5 PF09787.9 gi|433593240|ref|YP_007282726.1| - 0.093 12.2 6.0 0.15 11.5 6.0 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 Rootletin PF15035.6 gi|433593240|ref|YP_007282726.1| - 0.095 12.7 6.2 0.22 11.5 5.4 1.9 1 1 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion Nif11 PF07862.11 gi|433593240|ref|YP_007282726.1| - 0.11 12.8 0.9 5 7.5 0.3 2.9 2 0 0 2 2 2 0 Nif11 domain DUF16 PF01519.16 gi|433593240|ref|YP_007282726.1| - 0.12 12.8 0.2 0.25 11.8 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 DHR10 PF18595.1 gi|433593240|ref|YP_007282726.1| - 0.12 12.4 8.0 0.06 13.4 5.3 1.8 2 0 0 2 2 1 0 Designed helical repeat protein 10 domain Med9 PF07544.13 gi|433593240|ref|YP_007282726.1| - 0.19 11.9 1.1 0.35 11.0 1.1 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Prefoldin_2 PF01920.20 gi|433593240|ref|YP_007282726.1| - 0.22 11.5 2.9 0.5 10.3 2.9 1.5 1 0 0 1 1 1 0 Prefoldin subunit DUF4446 PF14584.6 gi|433593240|ref|YP_007282726.1| - 0.3 11.1 0.6 0.58 10.1 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) Atg14 PF10186.9 gi|433593240|ref|YP_007282726.1| - 0.35 9.9 2.1 0.54 9.3 2.1 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 APG6_N PF17675.1 gi|433593240|ref|YP_007282726.1| - 0.37 11.3 11.4 0.037 14.6 6.8 1.6 2 0 0 2 2 1 0 Apg6 coiled-coil region Phage_GPO PF05929.11 gi|433593240|ref|YP_007282726.1| - 0.56 9.8 5.0 7.8 6.0 2.1 2.4 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase TrwB_AAD_bind PF10412.9 gi|433593242|ref|YP_007282728.1| - 6.2e-07 28.7 0.1 2e-05 23.7 0.1 2.2 1 1 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|433593242|ref|YP_007282728.1| - 1.6e-05 24.9 0.0 3.4e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 gi|433593242|ref|YP_007282728.1| - 0.0002 20.3 0.1 0.00068 18.5 0.1 1.7 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer HHH_6 PF14579.6 gi|433593242|ref|YP_007282728.1| - 0.0084 16.3 0.0 0.017 15.4 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF87 PF01935.17 gi|433593242|ref|YP_007282728.1| - 0.11 12.6 0.3 1.8 8.6 0.0 2.5 2 1 0 2 2 2 0 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|433593242|ref|YP_007282728.1| - 0.41 9.9 3.1 0.97 8.7 0.0 2.8 4 0 0 4 4 4 0 FtsK/SpoIIIE family Rsa3 PF14615.6 gi|433593243|ref|YP_007282729.1| - 0.029 13.9 0.0 0.074 12.6 0.0 1.7 2 0 0 2 2 2 0 Ribosome-assembly protein 3 TraG-D_C PF12696.7 gi|433593244|ref|YP_007282730.1| - 0.0004 20.4 0.0 0.001 19.1 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.6 gi|433593244|ref|YP_007282730.1| - 0.0011 19.2 1.3 0.17 12.2 0.5 3.5 2 1 1 3 3 3 1 AAA domain Zot PF05707.12 gi|433593244|ref|YP_007282730.1| - 0.013 15.1 0.2 0.18 11.4 0.1 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_16 PF13191.6 gi|433593244|ref|YP_007282730.1| - 0.022 15.1 6.1 0.076 13.4 0.2 3.7 4 0 0 4 4 4 0 AAA ATPase domain DUF3487 PF11990.8 gi|433593244|ref|YP_007282730.1| - 0.2 11.6 0.9 0.41 10.5 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF2304 PF10066.9 gi|433593248|ref|YP_007282734.1| - 0.026 14.7 0.3 0.82 9.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) Phage_int_SAM_5 PF13102.6 gi|433593249|ref|YP_007282735.1| - 1.6e-05 25.1 0.0 4.6e-05 23.7 0.0 1.8 1 1 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|433593249|ref|YP_007282735.1| - 0.00035 20.8 0.4 0.036 14.4 0.0 3.6 4 0 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|433593249|ref|YP_007282735.1| - 0.12 12.9 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain SPDY PF03771.16 gi|433593250|ref|YP_007282736.1| - 0.032 14.1 1.4 0.032 14.1 1.4 2.0 2 1 1 3 3 3 0 Domain of unknown function (DUF317) Penicillinase_R PF03965.16 gi|433593251|ref|YP_007282737.1| - 0.0023 18.3 0.0 0.0051 17.2 0.0 1.7 1 1 0 1 1 1 1 Penicillinase repressor GntR PF00392.21 gi|433593251|ref|YP_007282737.1| - 0.0069 16.0 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family EAP30 PF04157.16 gi|433593251|ref|YP_007282737.1| - 0.015 14.6 1.0 0.023 14.0 0.1 1.7 2 0 0 2 2 2 0 EAP30/Vps36 family GPP34 PF05719.11 gi|433593251|ref|YP_007282737.1| - 0.015 15.4 1.1 0.028 14.5 0.6 1.4 1 1 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) TrmB PF01978.19 gi|433593251|ref|YP_007282737.1| - 0.026 14.4 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|433593251|ref|YP_007282737.1| - 0.042 13.6 0.0 0.44 10.2 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) SMC_Nse1 PF07574.13 gi|433593251|ref|YP_007282737.1| - 0.045 13.6 0.6 0.16 11.9 0.1 1.9 2 1 0 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex HTH_20 PF12840.7 gi|433593251|ref|YP_007282737.1| - 0.069 13.2 0.1 4.9 7.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain PspB PF06667.12 gi|433593251|ref|YP_007282737.1| - 3.2 7.9 5.4 24 5.0 0.1 2.7 3 0 0 3 3 3 0 Phage shock protein B DDE_Tnp_1 PF01609.21 gi|433593253|ref|YP_007282739.1| - 3.4e-09 36.7 0.0 5e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593253|ref|YP_007282739.1| - 0.005 16.8 0.0 0.014 15.4 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) SymE_toxin PF08845.10 gi|433593254|ref|YP_007282740.1| - 0.0079 16.2 0.0 0.0081 16.2 0.0 1.2 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system MazE_antitoxin PF04014.18 gi|433593254|ref|YP_007282740.1| - 0.012 15.5 0.1 0.017 15.1 0.1 1.2 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin AA_permease_2 PF13520.6 gi|433593256|ref|YP_007282742.1| - 6.4e-56 190.0 46.9 7.9e-56 189.7 46.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|433593256|ref|YP_007282742.1| - 4.8e-44 150.7 41.6 5.9e-44 150.4 41.6 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|433593256|ref|YP_007282742.1| - 7.8e-07 28.2 8.1 1.7e-06 27.1 8.1 1.5 1 0 0 1 1 1 1 Spore germination protein AA_permease_C PF13906.6 gi|433593256|ref|YP_007282742.1| - 6.7e-05 22.9 6.9 6.7e-05 22.9 6.9 3.8 5 0 0 5 5 5 1 C-terminus of AA_permease TrkA_N PF02254.18 gi|433593257|ref|YP_007282743.1| - 2.2e-23 82.7 0.3 3.9e-23 81.9 0.3 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|433593257|ref|YP_007282743.1| - 2.6e-05 24.0 0.1 0.00011 22.0 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|433593257|ref|YP_007282743.1| - 0.00013 21.6 0.2 0.00034 20.2 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|433593257|ref|YP_007282743.1| - 0.0003 20.1 0.1 0.00034 19.9 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|433593257|ref|YP_007282743.1| - 0.0016 18.8 0.1 0.0031 17.9 0.0 1.4 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|433593257|ref|YP_007282743.1| - 0.0045 16.9 0.3 0.012 15.5 0.2 1.7 1 1 1 2 2 2 1 NAD(P)H-binding NAD_binding_8 PF13450.6 gi|433593257|ref|YP_007282743.1| - 0.0092 16.2 0.0 0.065 13.5 0.0 2.3 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|433593257|ref|YP_007282743.1| - 0.011 16.2 0.1 0.026 15.0 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|433593257|ref|YP_007282743.1| - 0.012 14.9 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Glyco_transf_4 PF13439.6 gi|433593257|ref|YP_007282743.1| - 0.037 14.0 0.2 0.19 11.7 0.1 2.1 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Epimerase PF01370.21 gi|433593257|ref|YP_007282743.1| - 0.047 13.1 0.2 0.088 12.3 0.1 1.5 1 1 1 2 2 2 0 NAD dependent epimerase/dehydratase family B12-binding PF02310.19 gi|433593257|ref|YP_007282743.1| - 0.077 13.0 2.0 0.67 10.0 0.1 2.6 1 1 0 2 2 2 0 B12 binding domain Zip PF02535.22 gi|433593258|ref|YP_007282744.1| - 2.4e-15 56.6 21.2 1.5e-14 53.9 7.7 2.9 1 1 1 2 2 2 2 ZIP Zinc transporter Aconitase PF00330.20 gi|433593259|ref|YP_007282745.1| - 2.7e-170 567.4 0.0 3.3e-170 567.1 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|433593259|ref|YP_007282745.1| - 3.2e-42 143.9 0.0 6.6e-42 142.9 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain Usp PF00582.26 gi|433593261|ref|YP_007282747.1| - 2.7e-21 76.5 2.0 4.2e-21 75.9 2.0 1.3 1 1 0 1 1 1 1 Universal stress protein family Na_Ca_ex PF01699.24 gi|433593262|ref|YP_007282748.1| - 1.1e-22 80.6 31.8 2.2e-12 47.2 9.2 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Spc7 PF08317.11 gi|433593264|ref|YP_007282750.1| - 2.5e-06 26.6 48.4 0.0025 16.8 16.1 4.1 1 1 4 5 5 5 3 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 gi|433593264|ref|YP_007282750.1| - 3.4e-06 27.1 50.4 0.013 15.5 9.1 5.5 2 2 2 4 4 4 3 TPR/MLP1/MLP2-like protein GAS PF13851.6 gi|433593264|ref|YP_007282750.1| - 3.8e-06 26.4 40.7 0.026 13.9 17.4 4.1 2 2 1 3 3 3 3 Growth-arrest specific micro-tubule binding TMF_TATA_bd PF12325.8 gi|433593264|ref|YP_007282750.1| - 5.1e-06 26.7 52.2 0.016 15.4 2.0 5.3 3 2 2 5 5 5 3 TATA element modulatory factor 1 TATA binding AAA_13 PF13166.6 gi|433593264|ref|YP_007282750.1| - 1.4e-05 24.0 28.7 0.00017 20.4 12.9 3.1 1 1 2 3 3 3 2 AAA domain CENP-F_leu_zip PF10473.9 gi|433593264|ref|YP_007282750.1| - 1.5e-05 25.1 55.3 0.017 15.2 9.1 5.2 1 1 4 5 5 5 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_23 PF13476.6 gi|433593264|ref|YP_007282750.1| - 2.3e-05 25.0 39.1 1.1e+02 3.2 39.1 3.9 1 1 0 1 1 1 0 AAA domain FlaC_arch PF05377.11 gi|433593264|ref|YP_007282750.1| - 5.3e-05 23.5 37.7 0.27 11.7 0.5 8.4 5 2 1 7 7 7 1 Flagella accessory protein C (FlaC) ATG16 PF08614.11 gi|433593264|ref|YP_007282750.1| - 6e-05 23.4 58.4 0.0012 19.1 24.9 4.5 2 2 1 3 3 3 1 Autophagy protein 16 (ATG16) Uso1_p115_C PF04871.13 gi|433593264|ref|YP_007282750.1| - 0.00044 20.6 47.6 0.048 14.0 9.9 4.5 2 2 3 5 5 4 3 Uso1 / p115 like vesicle tethering protein, C terminal region Atg14 PF10186.9 gi|433593264|ref|YP_007282750.1| - 0.00076 18.7 35.2 0.11 11.5 12.2 2.8 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3584 PF12128.8 gi|433593264|ref|YP_007282750.1| - 0.00091 16.9 50.1 0.6 7.6 20.2 3.5 1 1 1 3 3 3 2 Protein of unknown function (DUF3584) Baculo_PEP_C PF04513.12 gi|433593264|ref|YP_007282750.1| - 0.00096 19.2 19.6 0.2 11.7 4.3 5.0 3 2 2 5 5 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 gi|433593264|ref|YP_007282750.1| - 0.0011 19.2 26.9 0.17 12.2 1.9 5.8 3 2 2 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 CALCOCO1 PF07888.11 gi|433593264|ref|YP_007282750.1| - 0.0022 16.9 22.4 0.0022 16.9 22.4 2.2 2 0 0 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like FTA4 PF13093.6 gi|433593264|ref|YP_007282750.1| - 0.0022 17.9 37.7 1.8 8.4 11.1 5.1 2 2 3 5 5 5 1 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Prefoldin_2 PF01920.20 gi|433593264|ref|YP_007282750.1| - 0.0028 17.6 47.4 0.11 12.5 2.5 7.6 2 2 4 6 6 6 2 Prefoldin subunit Seryl_tRNA_N PF02403.22 gi|433593264|ref|YP_007282750.1| - 0.0051 17.0 9.5 0.0051 17.0 9.5 4.9 3 2 2 5 5 4 1 Seryl-tRNA synthetase N-terminal domain Prefoldin PF02996.17 gi|433593264|ref|YP_007282750.1| - 0.0078 16.1 39.2 1.1 9.2 1.4 7.2 2 2 6 8 8 8 4 Prefoldin subunit DUF641 PF04859.12 gi|433593264|ref|YP_007282750.1| - 0.0081 16.5 3.9 0.0081 16.5 3.9 4.4 1 1 3 4 4 4 1 Plant protein of unknown function (DUF641) NPV_P10 PF05531.12 gi|433593264|ref|YP_007282750.1| - 0.0082 16.6 19.5 0.57 10.7 0.7 6.3 3 2 3 6 6 6 1 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.10 gi|433593264|ref|YP_007282750.1| - 0.009 16.2 3.4 0.009 16.2 3.4 4.1 3 1 1 4 4 4 1 Fibrinogen alpha/beta chain family TMF_DNA_bd PF12329.8 gi|433593264|ref|YP_007282750.1| - 0.015 15.3 3.0 0.015 15.3 3.0 7.0 4 2 4 8 8 6 0 TATA element modulatory factor 1 DNA binding COG2 PF06148.11 gi|433593264|ref|YP_007282750.1| - 0.021 14.9 2.7 0.021 14.9 2.7 5.3 1 1 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 XhlA PF10779.9 gi|433593264|ref|YP_007282750.1| - 0.027 14.7 3.7 0.027 14.7 3.7 6.6 6 1 0 6 6 6 0 Haemolysin XhlA Laminin_II PF06009.12 gi|433593264|ref|YP_007282750.1| - 0.028 14.4 26.6 0.99 9.4 3.8 4.9 3 2 2 6 6 5 0 Laminin Domain II MscS_porin PF12795.7 gi|433593264|ref|YP_007282750.1| - 0.035 13.6 47.8 0.094 12.2 19.2 4.1 1 1 3 4 4 4 0 Mechanosensitive ion channel porin domain AAA_21 PF13304.6 gi|433593264|ref|YP_007282750.1| - 0.035 13.9 6.9 0.056 13.3 2.6 2.6 2 2 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system DUF5082 PF16888.5 gi|433593264|ref|YP_007282750.1| - 0.036 14.3 32.4 0.77 10.0 6.1 5.5 2 2 1 3 3 3 0 Domain of unknown function (DUF5082) DUF1664 PF07889.12 gi|433593264|ref|YP_007282750.1| - 0.044 13.8 25.5 0.63 10.1 1.3 5.3 3 2 1 5 5 5 0 Protein of unknown function (DUF1664) APG6_N PF17675.1 gi|433593264|ref|YP_007282750.1| - 0.046 14.3 70.7 0.58 10.7 20.0 4.9 1 1 3 4 4 4 0 Apg6 coiled-coil region ABC_tran_CTD PF16326.5 gi|433593264|ref|YP_007282750.1| - 0.048 13.9 60.3 0.11 12.8 9.9 7.5 2 2 6 8 8 8 0 ABC transporter C-terminal domain DUF2730 PF10805.8 gi|433593264|ref|YP_007282750.1| - 0.067 13.3 29.0 3.1 7.9 3.4 5.5 3 1 2 5 5 5 0 Protein of unknown function (DUF2730) FapA PF03961.13 gi|433593264|ref|YP_007282750.1| - 0.072 11.7 31.1 0.7 8.4 2.8 4.1 1 1 3 4 4 4 0 Flagellar Assembly Protein A Tropomyosin_1 PF12718.7 gi|433593264|ref|YP_007282750.1| - 0.077 13.1 61.4 0.9 9.7 9.6 4.3 2 2 2 4 4 4 0 Tropomyosin like DegS PF05384.11 gi|433593264|ref|YP_007282750.1| - 0.08 12.4 41.1 0.032 13.7 15.0 5.5 4 2 0 5 5 5 0 Sensor protein DegS Spc24 PF08286.11 gi|433593264|ref|YP_007282750.1| - 0.11 12.8 50.1 1.2 9.5 1.6 7.7 2 2 6 8 8 8 0 Spc24 subunit of Ndc80 EzrA PF06160.12 gi|433593264|ref|YP_007282750.1| - 0.11 10.6 35.4 0.71 8.0 14.7 2.6 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA DUF4407 PF14362.6 gi|433593264|ref|YP_007282750.1| - 0.15 11.4 41.0 16 4.7 13.5 3.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Phage_GP20 PF06810.11 gi|433593264|ref|YP_007282750.1| - 0.18 11.6 38.2 0.63 9.8 3.9 5.1 2 2 3 5 5 5 0 Phage minor structural protein GP20 ZapB PF06005.12 gi|433593264|ref|YP_007282750.1| - 0.27 11.7 51.0 2.8 8.5 0.2 6.9 2 2 3 5 5 5 0 Cell division protein ZapB Exonuc_VII_L PF02601.15 gi|433593264|ref|YP_007282750.1| - 0.29 10.7 26.6 0.41 10.2 9.4 2.7 1 1 1 2 2 2 0 Exonuclease VII, large subunit HemX PF04375.14 gi|433593264|ref|YP_007282750.1| - 0.36 10.1 28.3 0.042 13.1 2.5 4.5 2 2 3 5 5 5 0 HemX, putative uroporphyrinogen-III C-methyltransferase HOOK PF05622.12 gi|433593264|ref|YP_007282750.1| - 0.36 8.9 50.6 0.18 9.9 12.1 2.7 1 1 1 2 2 2 0 HOOK protein Sec34 PF04136.15 gi|433593264|ref|YP_007282750.1| - 0.39 10.6 23.9 2.4 8.0 0.8 5.0 2 2 3 5 5 5 0 Sec34-like family DUF4686 PF15742.5 gi|433593264|ref|YP_007282750.1| - 0.42 9.7 33.4 0.011 14.9 10.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4686) TMPIT PF07851.13 gi|433593264|ref|YP_007282750.1| - 0.45 9.7 16.0 0.23 10.7 3.0 3.0 2 2 1 3 3 3 0 TMPIT-like protein DUF745 PF05335.13 gi|433593264|ref|YP_007282750.1| - 0.47 10.2 15.8 0.082 12.6 2.0 3.6 2 2 1 3 3 3 0 Protein of unknown function (DUF745) DUF724 PF05266.14 gi|433593264|ref|YP_007282750.1| - 0.53 10.1 29.0 0.18 11.6 9.2 3.7 2 2 2 4 4 4 0 Protein of unknown function (DUF724) Fez1 PF06818.15 gi|433593264|ref|YP_007282750.1| - 0.56 10.6 46.7 0.72 10.3 4.3 4.0 1 1 3 4 4 4 0 Fez1 DUF4201 PF13870.6 gi|433593264|ref|YP_007282750.1| - 0.72 9.6 38.3 0.42 10.3 2.8 5.5 2 2 2 4 4 4 0 Domain of unknown function (DUF4201) DUF3450 PF11932.8 gi|433593264|ref|YP_007282750.1| - 0.74 9.1 40.3 1.8 7.8 1.1 4.5 1 1 3 4 4 4 0 Protein of unknown function (DUF3450) WXG100 PF06013.12 gi|433593264|ref|YP_007282750.1| - 0.76 10.0 20.2 54 4.1 0.0 7.9 4 2 5 9 9 9 0 Proteins of 100 residues with WXG Fmp27_WPPW PF10359.9 gi|433593264|ref|YP_007282750.1| - 1.2 8.0 36.5 0.95 8.2 3.2 4.1 1 1 3 4 4 4 0 RNA pol II promoter Fmp27 protein domain DASH_Hsk3 PF08227.11 gi|433593264|ref|YP_007282750.1| - 1.5 9.2 6.2 12 6.3 0.0 4.7 5 0 0 5 5 3 0 DASH complex subunit Hsk3 like HMMR_N PF15905.5 gi|433593264|ref|YP_007282750.1| - 1.6 8.2 40.3 0.67 9.4 16.8 2.9 2 2 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DivIC PF04977.15 gi|433593264|ref|YP_007282750.1| - 1.8 8.4 54.1 0.44 10.4 2.0 7.8 4 2 4 8 8 8 0 Septum formation initiator Fzo_mitofusin PF04799.13 gi|433593264|ref|YP_007282750.1| - 2.4 7.7 25.2 4.6 6.8 0.6 5.7 2 1 5 7 7 7 0 fzo-like conserved region Jnk-SapK_ap_N PF09744.9 gi|433593264|ref|YP_007282750.1| - 2.8 8.2 57.2 2.5 8.3 1.9 5.3 1 1 4 5 5 5 0 JNK_SAPK-associated protein-1 CENP-H PF05837.12 gi|433593264|ref|YP_007282750.1| - 2.8 8.4 38.0 0.85 10.1 4.0 4.9 2 2 2 4 4 4 0 Centromere protein H (CENP-H) Prominin PF05478.11 gi|433593264|ref|YP_007282750.1| - 3 5.7 10.6 2.4 6.0 1.9 2.2 2 0 0 2 2 2 0 Prominin ApoO PF09769.9 gi|433593264|ref|YP_007282750.1| - 3 7.8 8.1 18 5.3 0.2 4.4 3 1 1 4 4 4 0 Apolipoprotein O T3SSipB PF16535.5 gi|433593264|ref|YP_007282750.1| - 3.2 8.2 20.1 0.86 10.1 2.0 4.5 1 1 3 4 4 4 0 Type III cell invasion protein SipB DHR10 PF18595.1 gi|433593264|ref|YP_007282750.1| - 3.6 7.7 64.2 0.29 11.2 2.4 6.4 2 2 4 6 6 6 0 Designed helical repeat protein 10 domain Flagellin_C PF00700.21 gi|433593264|ref|YP_007282750.1| - 3.8 7.9 6.0 48 4.4 0.3 3.8 3 0 0 3 3 3 0 Bacterial flagellin C-terminal helical region Cas_DxTHG PF09455.10 gi|433593264|ref|YP_007282750.1| - 4.1 6.9 7.7 8.6 5.8 2.8 2.5 1 1 2 3 3 3 0 CRISPR-associated (Cas) DxTHG family UPF0242 PF06785.11 gi|433593264|ref|YP_007282750.1| - 5.1 7.1 47.6 0.45 10.6 12.9 3.9 1 1 4 5 5 5 0 Uncharacterised protein family (UPF0242) N-terminus FlxA PF14282.6 gi|433593264|ref|YP_007282750.1| - 5.5 7.0 23.4 15 5.7 2.5 5.6 2 2 4 6 6 6 0 FlxA-like protein Rab5-bind PF09311.11 gi|433593264|ref|YP_007282750.1| - 6.3 6.1 42.6 0.17 11.2 9.9 4.2 1 1 2 4 4 4 0 Rabaptin-like protein YabA PF06156.13 gi|433593264|ref|YP_007282750.1| - 7 7.3 28.7 5.6 7.7 1.0 5.4 2 2 2 4 4 4 0 Initiation control protein YabA MCPsignal PF00015.21 gi|433593264|ref|YP_007282750.1| - 7.8 6.3 7.7 8.5 6.2 0.1 3.5 2 2 2 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain YqjK PF13997.6 gi|433593264|ref|YP_007282750.1| - 7.9 6.8 7.8 3.6 7.9 0.9 3.6 3 1 2 5 5 3 0 YqjK-like protein DUF2203 PF09969.9 gi|433593264|ref|YP_007282750.1| - 8 7.2 29.7 18 6.1 5.5 4.8 2 2 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) Bacillus_HBL PF05791.11 gi|433593264|ref|YP_007282750.1| - 8.1 6.2 13.2 1.4 8.7 0.3 4.3 3 2 2 5 5 5 0 Bacillus haemolytic enterotoxin (HBL) eIF3_N PF09440.10 gi|433593264|ref|YP_007282750.1| - 8.7 6.8 22.5 3.1 8.2 2.1 4.8 1 1 3 5 5 5 0 eIF3 subunit 6 N terminal domain MAD PF05557.13 gi|433593264|ref|YP_007282750.1| - 9.4 4.5 45.2 0.61 8.4 16.5 2.9 2 1 1 3 3 3 0 Mitotic checkpoint protein DDE_Tnp_1 PF01609.21 gi|433593265|ref|YP_007282751.1| - 1.3e-15 57.6 2.2 6.1e-15 55.5 2.2 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|433593265|ref|YP_007282751.1| - 0.00038 20.8 0.0 0.0014 19.0 0.0 2.0 2 1 0 2 2 2 1 Transposase DDE domain OAS1_C PF10421.9 gi|433593265|ref|YP_007282751.1| - 0.024 14.2 0.0 0.041 13.4 0.0 1.3 1 0 0 1 1 1 0 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus TBP PF00352.21 gi|433593266|ref|YP_007282752.1| - 7.2e-53 176.5 0.0 1.4e-25 89.0 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|433593266|ref|YP_007282752.1| - 3.5e-06 27.0 0.0 0.034 14.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Iso_dh PF00180.20 gi|433593267|ref|YP_007282753.1| - 1.8e-109 366.1 0.0 2.2e-109 365.8 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase PF00330.20 gi|433593269|ref|YP_007282755.1| - 4.5e-105 352.3 0.3 2.9e-103 346.4 0.3 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|433593269|ref|YP_007282755.1| - 1.7e-20 73.7 0.0 3.3e-20 72.7 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|433593269|ref|YP_007282755.1| - 0.0053 15.5 0.0 0.0081 14.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Barwin PF00967.17 gi|433593269|ref|YP_007282755.1| - 0.045 13.6 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Barwin family DUF5317 PF17248.2 gi|433593270|ref|YP_007282756.1| - 0.2 11.7 0.0 0.2 11.7 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5317) Hist_deacetyl PF00850.19 gi|433593271|ref|YP_007282757.1| - 3.7e-79 266.4 0.0 5.6e-79 265.8 0.0 1.3 1 0 0 1 1 1 1 Histone deacetylase domain MmlI PF09448.10 gi|433593271|ref|YP_007282757.1| - 0.13 12.7 0.0 0.56 10.7 0.0 2.0 1 1 0 1 1 1 0 Methylmuconolactone methyl-isomerase UPF0058 PF01893.16 gi|433593272|ref|YP_007282758.1| - 1.7e-15 57.1 0.1 1.9e-15 56.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DDE_Tnp_IS240 PF13610.6 gi|433593273|ref|YP_007282759.1| - 2.4e-14 53.7 0.0 3.3e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.26 gi|433593273|ref|YP_007282759.1| - 0.019 15.1 0.1 0.039 14.2 0.1 1.5 1 0 0 1 1 1 0 Integrase core domain AAA_22 PF13401.6 gi|433593273|ref|YP_007282759.1| - 0.066 13.5 0.4 0.15 12.4 0.4 1.7 1 1 1 2 2 2 0 AAA domain Zip PF02535.22 gi|433593274|ref|YP_007282760.1| - 1.3e-19 70.6 12.2 1.3e-14 54.2 6.3 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter YhhN PF07947.14 gi|433593274|ref|YP_007282760.1| - 0.15 11.7 0.2 0.15 11.7 0.2 2.5 2 2 0 2 2 2 0 YhhN family CTV_P6 PF06706.11 gi|433593274|ref|YP_007282760.1| - 1.6 8.5 4.1 8.5 6.2 0.1 2.9 2 0 0 2 2 2 0 Citrus tristeza virus 6-kDa protein Form_Nir_trans PF01226.17 gi|433593275|ref|YP_007282761.1| - 3e-43 147.8 20.9 3.4e-43 147.7 20.9 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter DUF202 PF02656.15 gi|433593276|ref|YP_007282762.1| - 1e-10 41.9 4.4 1.6e-10 41.2 4.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF202) DUF2721 PF11026.8 gi|433593276|ref|YP_007282762.1| - 0.023 14.6 0.6 0.028 14.3 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) Phage_holin_3_6 PF07332.11 gi|433593276|ref|YP_007282762.1| - 0.024 14.7 3.7 0.034 14.2 3.7 1.3 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III UPF0029 PF01205.19 gi|433593277|ref|YP_007282763.1| - 4.1e-28 97.8 0.0 5.9e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|433593277|ref|YP_007282763.1| - 7.4e-11 41.8 1.8 9.7e-11 41.4 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|433593277|ref|YP_007282763.1| - 0.014 15.4 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus PTA_PTB PF01515.19 gi|433593278|ref|YP_007282764.1| - 8.2e-94 314.5 0.1 1.1e-93 314.0 0.1 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|433593278|ref|YP_007282764.1| - 3.9e-29 101.7 0.0 8.3e-27 94.2 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|433593278|ref|YP_007282764.1| - 9.4e-21 74.2 0.2 2.6e-20 72.8 0.2 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain DUF1876 PF08962.11 gi|433593278|ref|YP_007282764.1| - 0.11 12.5 0.4 0.45 10.5 0.4 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1876) zinc_ribbon_4 PF13717.6 gi|433593279|ref|YP_007282765.1| - 0.0098 15.8 0.4 0.32 11.0 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|433593279|ref|YP_007282765.1| - 0.046 13.4 0.1 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit ILVD_EDD PF00920.21 gi|433593280|ref|YP_007282766.1| - 7e-196 651.8 0.2 7.9e-196 651.6 0.2 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|433593280|ref|YP_007282766.1| - 0.077 13.1 0.4 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 DGC domain CitMHS PF03600.16 gi|433593281|ref|YP_007282767.1| - 3e-30 105.5 33.3 3e-30 105.5 33.3 1.4 1 1 1 2 2 2 1 Citrate transporter ArsB PF02040.15 gi|433593281|ref|YP_007282767.1| - 1.9e-07 30.8 19.3 8.2e-07 28.7 19.3 1.9 1 1 0 1 1 1 1 Arsenical pump membrane protein Phage_holin_5_1 PF06946.11 gi|433593281|ref|YP_007282767.1| - 0.0012 19.2 1.4 0.0047 17.3 0.6 2.4 1 1 1 2 2 2 1 Bacteriophage A118-like holin, Hol118 AAA_31 PF13614.6 gi|433593283|ref|YP_007282769.1| - 3.3e-28 98.8 0.0 5e-28 98.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|433593283|ref|YP_007282769.1| - 1.2e-14 54.4 0.0 2.2e-14 53.6 0.0 1.4 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|433593283|ref|YP_007282769.1| - 1.5e-11 44.2 0.0 1.3e-10 41.2 0.0 2.0 1 1 1 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|433593283|ref|YP_007282769.1| - 2.5e-10 40.2 0.0 1.3e-08 34.6 0.0 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|433593283|ref|YP_007282769.1| - 8.3e-07 28.5 0.0 1.6e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|433593283|ref|YP_007282769.1| - 5.5e-06 25.9 0.2 0.00084 18.7 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ Fer4_NifH PF00142.18 gi|433593283|ref|YP_007282769.1| - 2.1e-05 24.1 0.0 0.0019 17.7 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|433593283|ref|YP_007282769.1| - 0.0031 16.8 0.1 0.029 13.7 0.0 2.1 2 0 0 2 2 2 1 VirC1 protein CLP1_P PF16575.5 gi|433593283|ref|YP_007282769.1| - 0.012 15.4 0.0 0.023 14.5 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|433593283|ref|YP_007282769.1| - 0.032 13.8 0.0 0.075 12.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|433593283|ref|YP_007282769.1| - 0.071 12.1 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB APS_kinase PF01583.20 gi|433593283|ref|YP_007282769.1| - 0.075 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_18 PF13238.6 gi|433593283|ref|YP_007282769.1| - 0.083 13.4 0.0 0.76 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain UvrD-helicase PF00580.21 gi|433593284|ref|YP_007282770.1| - 2.6e-61 207.9 0.0 5.8e-61 206.7 0.0 1.6 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|433593284|ref|YP_007282770.1| - 1.3e-29 103.5 0.0 1.8e-28 99.7 0.0 2.5 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|433593284|ref|YP_007282770.1| - 1.1e-23 84.2 0.0 5.3e-22 78.7 0.0 2.3 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|433593284|ref|YP_007282770.1| - 1.8e-10 41.2 0.8 1.5e-09 38.2 0.0 2.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|433593284|ref|YP_007282770.1| - 3.3e-10 39.6 0.2 0.001 18.9 0.0 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|433593284|ref|YP_007282770.1| - 9.5e-10 38.5 0.5 2.5e-05 24.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|433593284|ref|YP_007282770.1| - 0.00016 21.5 0.3 7.2 6.3 0.0 4.2 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|433593284|ref|YP_007282770.1| - 0.0022 18.3 0.1 3.2 8.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain DUF2800 PF10926.8 gi|433593284|ref|YP_007282770.1| - 0.009 15.3 0.0 0.021 14.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) DEAD PF00270.29 gi|433593284|ref|YP_007282770.1| - 0.036 13.8 0.0 0.086 12.6 0.0 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|433593284|ref|YP_007282770.1| - 0.042 14.2 10.0 0.68 10.3 0.5 3.5 2 1 1 3 3 3 0 AAA ATPase domain PDDEXK_1 PF12705.7 gi|433593285|ref|YP_007282771.1| - 4.9e-32 111.8 0.0 7.7e-31 107.9 0.0 2.6 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Exonuc_V_gamma PF04257.14 gi|433593285|ref|YP_007282771.1| - 4.5e-08 31.8 0.0 0.00066 18.0 0.0 2.1 2 0 0 2 2 2 2 Exodeoxyribonuclease V, gamma subunit PilN PF05137.13 gi|433593285|ref|YP_007282771.1| - 0.18 11.9 0.0 0.41 10.8 0.0 1.6 1 0 0 1 1 1 0 Fimbrial assembly protein (PilN) DUF1819 PF08849.11 gi|433593286|ref|YP_007282772.1| - 5.5e-06 26.3 0.0 7.7e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) ABC_tran PF00005.27 gi|433593287|ref|YP_007282773.1| - 0.05 14.1 0.3 0.55 10.7 0.0 2.9 3 0 0 3 3 3 0 ABC transporter DUF1515 PF07439.11 gi|433593287|ref|YP_007282773.1| - 0.15 12.1 5.6 0.15 12.1 0.6 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1515) FlaC_arch PF05377.11 gi|433593287|ref|YP_007282773.1| - 0.6 10.5 5.2 8.9 6.8 1.1 4.1 4 0 0 4 4 4 0 Flagella accessory protein C (FlaC) AAA_16 PF13191.6 gi|433593287|ref|YP_007282773.1| - 9.9 6.5 13.7 1.6 9.1 0.1 4.9 5 1 0 5 5 5 0 AAA ATPase domain DUF1788 PF08747.11 gi|433593288|ref|YP_007282774.1| - 4.9e-12 46.0 0.0 6.5e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) RPA_interact_M PF14767.6 gi|433593288|ref|YP_007282774.1| - 0.025 15.2 0.9 0.038 14.6 0.9 1.3 1 0 0 1 1 1 0 Replication protein A interacting middle Tudor_3 PF18115.1 gi|433593288|ref|YP_007282774.1| - 0.083 12.7 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 DNA repair protein Crb2 Tudor domain Bac_DnaA PF00308.18 gi|433593289|ref|YP_007282775.1| - 0.012 15.5 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_22 PF13401.6 gi|433593289|ref|YP_007282775.1| - 0.043 14.1 0.0 0.26 11.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain Snapin_Pallidin PF14712.6 gi|433593289|ref|YP_007282775.1| - 0.45 11.0 1.8 1.9 9.0 0.8 2.4 2 0 0 2 2 2 0 Snapin/Pallidin N6_Mtase PF02384.16 gi|433593291|ref|YP_007282777.1| - 1.7e-09 37.4 0.0 3.9e-06 26.4 0.0 3.3 3 0 0 3 3 3 2 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|433593291|ref|YP_007282777.1| - 6.4e-05 22.8 0.0 0.00014 21.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|433593291|ref|YP_007282777.1| - 0.0025 17.5 0.0 0.077 12.7 0.0 2.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Eco57I PF07669.11 gi|433593291|ref|YP_007282777.1| - 0.045 14.3 0.0 0.096 13.2 0.0 1.5 1 0 0 1 1 1 0 Eco57I restriction-modification methylase DUF3150 PF11348.8 gi|433593292|ref|YP_007282778.1| - 0.16 11.2 4.9 0.95 8.6 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3150) UPF0184 PF03670.13 gi|433593292|ref|YP_007282778.1| - 2.9 8.3 6.6 16 5.9 0.0 3.8 4 0 0 4 4 4 0 Uncharacterised protein family (UPF0184) ATP-synt_F PF01990.17 gi|433593293|ref|YP_007282779.1| - 0.16 12.3 0.0 3.3 8.1 0.0 2.1 2 0 0 2 2 2 0 ATP synthase (F/14-kDa) subunit PglZ PF08665.12 gi|433593294|ref|YP_007282780.1| - 5.1e-12 46.2 0.0 8.9e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 PglZ domain Helicase_C PF00271.31 gi|433593295|ref|YP_007282781.1| - 6.2e-24 84.5 0.0 1.7e-23 83.1 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|433593295|ref|YP_007282781.1| - 9.9e-18 64.0 0.0 7.9e-16 57.7 0.0 2.4 1 1 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|433593295|ref|YP_007282781.1| - 1.3e-13 51.3 0.4 8.4e-13 48.7 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|433593295|ref|YP_007282781.1| - 9.1e-06 25.5 0.0 3.8e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase RapA_C PF12137.8 gi|433593295|ref|YP_007282781.1| - 6.4e-05 22.1 0.2 6.4e-05 22.1 0.2 2.9 3 0 0 3 3 3 1 RNA polymerase recycling family C-terminal Helicase_C_4 PF13871.6 gi|433593295|ref|YP_007282781.1| - 0.00055 19.7 0.0 0.039 13.6 0.0 2.5 2 0 0 2 2 2 1 C-terminal domain on Strawberry notch homologue Helicase_C_2 PF13307.6 gi|433593295|ref|YP_007282781.1| - 0.00058 20.1 0.3 0.0039 17.4 0.0 2.5 2 1 0 2 2 2 1 Helicase C-terminal domain DUF4611 PF15387.6 gi|433593295|ref|YP_007282781.1| - 0.0099 16.1 11.2 0.47 10.7 2.9 3.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4611) AAA_34 PF13872.6 gi|433593295|ref|YP_007282781.1| - 0.024 13.5 0.4 0.11 11.3 0.4 1.8 1 1 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 DUF2075 PF09848.9 gi|433593295|ref|YP_007282781.1| - 0.14 11.3 0.0 0.14 11.3 0.0 3.5 5 1 0 5 5 5 0 Uncharacterized conserved protein (DUF2075) KxDL PF10241.9 gi|433593295|ref|YP_007282781.1| - 1.1 9.6 5.6 20 5.6 2.2 3.1 2 0 0 2 2 2 0 Uncharacterized conserved protein zf-HC2 PF13490.6 gi|433593295|ref|YP_007282781.1| - 3.7 7.9 9.5 4.3 7.7 2.2 4.2 4 0 0 4 4 3 0 Putative zinc-finger DDE_Tnp_1 PF01609.21 gi|433593297|ref|YP_007282783.1| - 4.4e-27 95.1 0.0 6.1e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433593297|ref|YP_007282783.1| - 0.0015 17.9 0.1 0.0022 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|433593297|ref|YP_007282783.1| - 0.11 10.7 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 SRAP PF02586.14 gi|433593298|ref|YP_007282784.1| - 4.1e-63 212.8 0.0 4.7e-63 212.7 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) CorA PF01544.18 gi|433593301|ref|YP_007282787.1| - 0.02 14.2 1.7 0.023 14.0 1.7 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein HSBP1 PF06825.12 gi|433593301|ref|YP_007282787.1| - 0.071 13.0 0.4 0.11 12.4 0.4 1.3 1 0 0 1 1 1 0 Heat shock factor binding protein 1 MutL_C PF08676.11 gi|433593301|ref|YP_007282787.1| - 0.096 12.4 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 MutL C terminal dimerisation domain XhlA PF10779.9 gi|433593301|ref|YP_007282787.1| - 0.12 12.5 1.0 0.25 11.6 1.0 1.4 1 0 0 1 1 1 0 Haemolysin XhlA Laminin_I PF06008.14 gi|433593301|ref|YP_007282787.1| - 0.16 11.6 2.3 0.18 11.5 2.3 1.2 1 0 0 1 1 1 0 Laminin Domain I PSK_trans_fac PF07704.11 gi|433593301|ref|YP_007282787.1| - 0.67 10.7 8.5 15 6.4 8.5 2.0 1 1 0 1 1 1 0 Rv0623-like transcription factor DNA_pol_B PF00136.21 gi|433593302|ref|YP_007282788.1| - 9.4e-26 90.5 0.0 1.9e-25 89.5 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase family B Glycos_transf_N PF04413.16 gi|433593302|ref|YP_007282788.1| - 0.049 13.3 0.0 0.092 12.4 0.0 1.3 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Cdc6_C PF09079.11 gi|433593319|ref|YP_007296060.1| - 2.6e-20 72.2 0.1 6.6e-20 70.9 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|433593319|ref|YP_007296060.1| - 1.8e-11 44.5 0.0 4.8e-11 43.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433593319|ref|YP_007296060.1| - 1.2e-09 38.8 0.0 4e-08 33.8 0.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|433593319|ref|YP_007296060.1| - 2.4e-06 28.0 0.0 6.2e-06 26.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|433593319|ref|YP_007296060.1| - 0.00028 20.9 0.0 0.00054 20.0 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|433593319|ref|YP_007296060.1| - 0.00069 19.1 0.0 0.0012 18.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein DUF815 PF05673.13 gi|433593319|ref|YP_007296060.1| - 0.00083 18.6 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.12 gi|433593319|ref|YP_007296060.1| - 0.0028 17.6 0.0 0.005 16.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_18 PF13238.6 gi|433593319|ref|YP_007296060.1| - 0.013 16.0 0.1 0.049 14.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|433593319|ref|YP_007296060.1| - 0.013 15.5 0.0 0.15 12.0 0.0 2.5 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_32 PF13654.6 gi|433593319|ref|YP_007296060.1| - 0.017 13.9 0.2 4.4 6.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|433593319|ref|YP_007296060.1| - 0.02 15.3 0.0 0.036 14.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|433593319|ref|YP_007296060.1| - 0.027 13.7 0.0 0.042 13.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_7 PF12775.7 gi|433593319|ref|YP_007296060.1| - 0.061 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|433593319|ref|YP_007296060.1| - 0.081 12.6 0.0 0.19 11.4 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain RsgA_GTPase PF03193.16 gi|433593319|ref|YP_007296060.1| - 0.097 12.6 0.0 0.28 11.1 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase CHASE8 PF17152.4 gi|433593319|ref|YP_007296060.1| - 0.12 12.6 0.3 0.27 11.5 0.3 1.5 1 0 0 1 1 1 0 Periplasmic sensor domain TsaE PF02367.17 gi|433593319|ref|YP_007296060.1| - 0.17 11.9 0.0 0.39 10.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE OrfB_Zn_ribbon PF07282.11 gi|433593320|ref|YP_007296061.1| - 5.2e-22 77.6 2.5 5.2e-22 77.6 2.5 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|433593320|ref|YP_007296061.1| - 1.6e-07 31.6 0.0 3.7e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 Probable transposase HypA PF01155.19 gi|433593320|ref|YP_007296061.1| - 0.0042 17.1 0.4 0.0096 15.9 0.4 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_2 PF03107.16 gi|433593320|ref|YP_007296061.1| - 0.036 14.4 2.0 0.095 13.0 2.0 1.7 1 0 0 1 1 1 0 C1 domain DNA_RNApol_7kD PF03604.13 gi|433593320|ref|YP_007296061.1| - 0.68 9.7 2.7 4.3 7.1 2.9 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|433593320|ref|YP_007296061.1| - 1.5 8.6 6.4 9.2 6.1 6.5 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|433593320|ref|YP_007296061.1| - 5.6 6.8 15.9 1.5 8.6 1.5 3.5 3 0 0 3 3 3 0 Rubredoxin metal binding domain DUF2383 PF09537.10 gi|433593321|ref|YP_007296062.1| - 0.02 15.2 0.7 0.078 13.3 0.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) UVR PF02151.19 gi|433593321|ref|YP_007296062.1| - 0.02 14.6 2.4 0.058 13.2 2.4 1.9 1 0 0 1 1 1 0 UvrB/uvrC motif ABC_tran_CTD PF16326.5 gi|433593321|ref|YP_007296062.1| - 0.023 14.9 3.7 0.077 13.3 2.7 2.4 1 1 0 1 1 1 0 ABC transporter C-terminal domain DivIC PF04977.15 gi|433593321|ref|YP_007296062.1| - 0.058 13.2 2.9 0.077 12.8 1.4 2.0 2 0 0 2 2 2 0 Septum formation initiator PTPlike_phytase PF14566.6 gi|433593321|ref|YP_007296062.1| - 0.3 11.2 2.6 0.88 9.7 1.0 2.4 3 0 0 3 3 3 0 Inositol hexakisphosphate HEAT_2 PF13646.6 gi|433593322|ref|YP_007296063.1| - 0.003 17.9 4.0 0.0052 17.1 1.1 2.2 2 1 0 2 2 2 1 HEAT repeats HEAT PF02985.22 gi|433593322|ref|YP_007296063.1| - 0.012 15.8 0.7 0.11 12.8 0.1 2.8 3 0 0 3 3 3 0 HEAT repeat DUF2937 PF11157.8 gi|433593322|ref|YP_007296063.1| - 0.018 14.8 1.1 0.37 10.5 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) HEAT_EZ PF13513.6 gi|433593322|ref|YP_007296063.1| - 2.3 8.8 5.0 0.41 11.2 0.3 2.3 3 0 0 3 3 3 0 HEAT-like repeat FXR_C1 PF16096.5 gi|433593323|ref|YP_007296064.1| - 0.025 14.8 1.2 1.1 9.6 0.4 2.3 2 0 0 2 2 2 0 Fragile X-related 1 protein C-terminal region 2 TFIIB PF00382.19 gi|433593324|ref|YP_007296065.1| - 5.3e-08 32.8 0.7 2.8e-05 24.1 0.0 2.6 2 1 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433593324|ref|YP_007296065.1| - 0.00081 18.8 1.7 0.0018 17.7 1.7 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|433593324|ref|YP_007296065.1| - 0.022 14.8 0.5 0.054 13.5 0.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|433593324|ref|YP_007296065.1| - 0.034 13.6 1.4 0.087 12.3 1.4 1.7 1 0 0 1 1 1 0 zinc-ribbon domain TAFA PF12020.8 gi|433593324|ref|YP_007296065.1| - 0.15 12.5 1.8 0.76 10.3 0.1 2.3 2 0 0 2 2 2 0 TAFA family TrmB PF01978.19 gi|433593325|ref|YP_007296066.1| - 0.00017 21.4 0.0 0.0019 18.1 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|433593325|ref|YP_007296066.1| - 0.0099 15.7 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|433593325|ref|YP_007296066.1| - 0.054 13.5 0.0 0.24 11.4 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix AbiEii PF08843.11 gi|433593326|ref|YP_007296067.1| - 4.6e-05 23.5 2.2 7.2e-05 22.9 2.2 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system PSK_trans_fac PF07704.11 gi|433593327|ref|YP_007296068.1| - 0.0094 16.7 4.3 0.025 15.3 4.3 1.6 1 1 0 1 1 1 1 Rv0623-like transcription factor TrmB PF01978.19 gi|433593328|ref|YP_007296069.1| - 0.00053 19.8 0.0 0.0017 18.2 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB 3HCDH_RFF PF18321.1 gi|433593328|ref|YP_007296069.1| - 0.047 14.1 0.3 0.2 12.1 0.0 2.1 2 0 0 2 2 2 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AAA_31 PF13614.6 gi|433593330|ref|YP_007296071.1| - 3.6e-31 108.4 0.0 4.8e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|433593330|ref|YP_007296071.1| - 2.8e-13 50.0 0.0 3.9e-13 49.6 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|433593330|ref|YP_007296071.1| - 1.9e-10 40.5 0.0 4.9e-08 32.6 0.0 2.2 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|433593330|ref|YP_007296071.1| - 4.4e-09 36.2 0.0 6.9e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|433593330|ref|YP_007296071.1| - 5.3e-07 29.3 0.1 1.1e-06 28.2 0.0 1.5 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|433593330|ref|YP_007296071.1| - 0.00032 20.2 0.0 0.00074 19.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|433593330|ref|YP_007296071.1| - 0.004 16.5 0.1 0.018 14.4 0.1 1.9 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.15 gi|433593330|ref|YP_007296071.1| - 0.011 15.0 0.3 0.039 13.1 0.0 2.0 2 1 0 2 2 2 0 Anion-transporting ATPase SPX PF03105.19 gi|433593331|ref|YP_007296072.1| - 2 8.3 10.7 2.3 8.0 10.7 1.0 1 0 0 1 1 1 0 SPX domain Presenilin PF01080.17 gi|433593331|ref|YP_007296072.1| - 6.6 5.4 7.0 7 5.3 7.0 1.1 1 0 0 1 1 1 0 Presenilin Cdc6_C PF09079.11 gi|433593333|ref|YP_007296074.1| - 6.2e-16 58.1 0.1 1.8e-15 56.7 0.1 1.9 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|433593333|ref|YP_007296074.1| - 2.2e-13 50.7 0.1 9.1e-13 48.7 0.0 2.0 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433593333|ref|YP_007296074.1| - 2.4e-11 44.3 3.7 6.8e-09 36.3 3.6 3.1 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|433593333|ref|YP_007296074.1| - 8.1e-06 26.3 0.0 2.2e-05 24.9 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|433593333|ref|YP_007296074.1| - 1.6e-05 24.9 0.0 3.9e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|433593333|ref|YP_007296074.1| - 7.6e-05 22.7 0.0 0.00021 21.2 0.0 1.8 2 0 0 2 2 2 1 NACHT domain DEAD PF00270.29 gi|433593333|ref|YP_007296074.1| - 0.00045 20.0 0.3 0.42 10.4 0.1 2.4 1 1 0 2 2 2 2 DEAD/DEAH box helicase DUF87 PF01935.17 gi|433593333|ref|YP_007296074.1| - 0.00088 19.4 0.9 2.8 8.0 0.0 3.2 3 0 0 3 3 3 1 Helicase HerA, central domain NB-ARC PF00931.22 gi|433593333|ref|YP_007296074.1| - 0.0013 18.0 0.0 0.0032 16.7 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain Sigma54_activat PF00158.26 gi|433593333|ref|YP_007296074.1| - 0.0015 18.3 0.0 0.0032 17.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain TniB PF05621.11 gi|433593333|ref|YP_007296074.1| - 0.0028 17.1 0.0 0.0057 16.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein KAP_NTPase PF07693.14 gi|433593333|ref|YP_007296074.1| - 0.004 16.4 2.2 0.077 12.2 0.0 2.9 2 1 1 3 3 3 1 KAP family P-loop domain AAA_7 PF12775.7 gi|433593333|ref|YP_007296074.1| - 0.0058 16.2 0.0 0.1 12.1 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region DUF815 PF05673.13 gi|433593333|ref|YP_007296074.1| - 0.0071 15.5 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|433593333|ref|YP_007296074.1| - 0.0076 16.6 0.0 0.031 14.7 0.0 2.0 2 0 0 2 2 2 1 RNA helicase AAA_2 PF07724.14 gi|433593333|ref|YP_007296074.1| - 0.013 15.7 0.0 0.029 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_24 PF13479.6 gi|433593333|ref|YP_007296074.1| - 0.021 14.6 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|433593333|ref|YP_007296074.1| - 0.022 15.3 0.1 0.12 12.9 0.0 2.3 3 0 0 3 3 2 0 AAA domain PIF1 PF05970.14 gi|433593333|ref|YP_007296074.1| - 0.022 13.9 0.0 0.039 13.1 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase T2SSE PF00437.20 gi|433593333|ref|YP_007296074.1| - 0.023 13.8 0.0 0.049 12.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_32 PF13654.6 gi|433593333|ref|YP_007296074.1| - 0.028 13.2 0.2 0.44 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|433593333|ref|YP_007296074.1| - 0.037 14.0 0.0 12 5.9 0.0 2.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|433593333|ref|YP_007296074.1| - 0.047 13.0 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF2075 PF09848.9 gi|433593333|ref|YP_007296074.1| - 0.049 12.9 0.0 0.12 11.6 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) MMR_HSR1 PF01926.23 gi|433593333|ref|YP_007296074.1| - 0.055 13.6 0.2 0.19 11.9 0.0 2.0 2 1 0 2 2 1 0 50S ribosome-binding GTPase TrwB_AAD_bind PF10412.9 gi|433593333|ref|YP_007296074.1| - 0.069 12.0 0.0 0.23 10.3 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain RuvB_N PF05496.12 gi|433593333|ref|YP_007296074.1| - 0.089 12.5 0.0 0.34 10.6 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain RsgA_GTPase PF03193.16 gi|433593333|ref|YP_007296074.1| - 0.12 12.2 0.0 0.54 10.1 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA_lid_4 PF17864.1 gi|433593333|ref|YP_007296074.1| - 0.14 11.9 0.6 0.44 10.3 0.2 2.1 2 0 0 2 2 1 0 RuvB AAA lid domain AAA_assoc_2 PF16193.5 gi|433593333|ref|YP_007296074.1| - 0.16 12.4 0.5 0.44 10.9 0.3 1.9 2 0 0 2 2 1 0 AAA C-terminal domain AAA_33 PF13671.6 gi|433593333|ref|YP_007296074.1| - 0.17 12.1 0.8 0.74 10.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain DUF3027 PF11228.8 gi|433593335|ref|YP_007296076.1| - 0.04 13.9 2.0 0.54 10.3 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3027) HypA PF01155.19 gi|433593335|ref|YP_007296076.1| - 0.087 12.9 5.3 3.6 7.6 0.5 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-CRD PF17979.1 gi|433593335|ref|YP_007296076.1| - 0.13 12.4 4.7 1.9 8.6 0.8 2.3 2 0 0 2 2 2 0 Cysteine rich domain with multizinc binding regions zinc_ribbon_15 PF17032.5 gi|433593335|ref|YP_007296076.1| - 0.14 12.9 8.7 1.1 10.0 0.2 3.2 3 1 0 4 4 4 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|433593335|ref|YP_007296076.1| - 0.15 11.5 8.4 0.039 13.4 2.5 2.9 3 0 0 3 3 3 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|433593335|ref|YP_007296076.1| - 0.53 10.2 10.8 2.7 7.9 0.1 4.2 4 0 0 4 4 4 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|433593335|ref|YP_007296076.1| - 0.98 9.5 11.0 0.52 10.4 0.3 3.4 2 1 0 2 2 2 0 Double zinc ribbon C1_1 PF00130.22 gi|433593335|ref|YP_007296076.1| - 1.4 8.9 6.0 18 5.3 0.8 2.9 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RanBP PF00641.18 gi|433593335|ref|YP_007296076.1| - 6.2 6.2 7.5 11 5.4 0.1 2.8 2 1 0 2 2 2 0 Zn-finger in Ran binding protein and others TFIIB PF00382.19 gi|433593336|ref|YP_007296077.1| - 2.2e-27 94.9 0.1 9.5e-15 54.4 0.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433593336|ref|YP_007296077.1| - 2e-13 49.6 2.6 4.1e-13 48.6 2.6 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|433593336|ref|YP_007296077.1| - 0.0014 18.6 1.3 0.0031 17.5 1.3 1.5 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|433593336|ref|YP_007296077.1| - 0.013 15.4 1.5 0.031 14.2 1.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF1670 PF07900.11 gi|433593336|ref|YP_007296077.1| - 0.016 14.6 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) RB_B PF01857.20 gi|433593336|ref|YP_007296077.1| - 0.042 13.9 0.0 0.076 13.0 0.0 1.3 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain Zn-ribbon_8 PF09723.10 gi|433593336|ref|YP_007296077.1| - 0.16 12.1 4.0 0.9 9.7 0.4 2.6 1 1 2 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|433593336|ref|YP_007296077.1| - 0.39 10.2 3.7 1.8 8.1 0.6 2.3 1 1 1 2 2 2 0 zinc-ribbon domain tRNA_anti-codon PF01336.25 gi|433593337|ref|YP_007296078.1| - 0.0088 16.0 0.1 0.021 14.8 0.1 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TrmB PF01978.19 gi|433593340|ref|YP_007296081.1| - 3.9e-07 29.9 0.0 2.2e-06 27.4 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|433593340|ref|YP_007296081.1| - 2.7e-05 23.9 0.0 7.4e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|433593340|ref|YP_007296081.1| - 0.00044 20.1 0.0 0.0011 18.8 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|433593340|ref|YP_007296081.1| - 0.00065 19.7 0.0 0.0013 18.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|433593340|ref|YP_007296081.1| - 0.0036 17.5 0.0 0.0077 16.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|433593340|ref|YP_007296081.1| - 0.015 14.8 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|433593340|ref|YP_007296081.1| - 0.038 13.9 0.0 0.088 12.8 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.6 gi|433593340|ref|YP_007296081.1| - 0.047 13.7 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_5 PF01022.20 gi|433593340|ref|YP_007296081.1| - 0.047 13.5 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family BsuBI_PstI_RE_N PF17728.1 gi|433593343|ref|YP_007296084.1| - 0.084 12.7 1.5 0.097 12.5 0.2 1.8 2 1 0 2 2 2 0 BsuBI/PstI restriction endonuclease HTH domain FlxA PF14282.6 gi|433593344|ref|YP_007296085.1| - 0.0085 16.1 1.1 0.018 15.0 1.1 1.5 1 0 0 1 1 1 1 FlxA-like protein CENP-Q PF13094.6 gi|433593344|ref|YP_007296085.1| - 0.015 15.5 5.6 0.015 15.5 5.6 1.9 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit ZapB PF06005.12 gi|433593344|ref|YP_007296085.1| - 0.03 14.8 3.8 0.08 13.4 3.8 1.7 1 0 0 1 1 1 0 Cell division protein ZapB DUF2205 PF10224.9 gi|433593344|ref|YP_007296085.1| - 0.095 12.7 2.7 0.21 11.6 2.7 1.5 1 0 0 1 1 1 0 Short coiled-coil protein Prefoldin PF02996.17 gi|433593344|ref|YP_007296085.1| - 0.11 12.4 1.6 0.26 11.2 1.6 1.6 1 0 0 1 1 1 0 Prefoldin subunit DUF1664 PF07889.12 gi|433593344|ref|YP_007296085.1| - 0.14 12.2 0.6 0.27 11.3 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Cep57_CLD_2 PF14197.6 gi|433593344|ref|YP_007296085.1| - 0.19 11.8 7.0 0.53 10.4 7.0 1.7 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 FlaC_arch PF05377.11 gi|433593344|ref|YP_007296085.1| - 0.21 12.0 0.5 0.45 10.9 0.5 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ATG16 PF08614.11 gi|433593344|ref|YP_007296085.1| - 0.4 10.9 12.7 0.085 13.1 6.9 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF3450 PF11932.8 gi|433593344|ref|YP_007296085.1| - 0.41 9.9 6.6 0.069 12.4 2.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DivIC PF04977.15 gi|433593344|ref|YP_007296085.1| - 0.45 10.3 6.6 0.07 12.9 1.9 2.0 2 0 0 2 2 2 0 Septum formation initiator TMCO5 PF14992.6 gi|433593344|ref|YP_007296085.1| - 3.2 7.2 8.1 11 5.6 8.1 1.8 1 1 0 1 1 1 0 TMCO5 family SlyX PF04102.12 gi|433593344|ref|YP_007296085.1| - 3.8 8.2 8.6 0.59 10.8 3.4 2.4 3 0 0 3 3 3 0 SlyX TrwB_AAD_bind PF10412.9 gi|433593345|ref|YP_007296086.1| - 3.1e-09 36.2 0.0 6.4e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|433593345|ref|YP_007296086.1| - 4.2e-06 26.8 0.0 1.1e-05 25.4 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 gi|433593345|ref|YP_007296086.1| - 1.3e-05 24.2 0.0 0.00044 19.2 0.1 2.1 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer Pox_D5 PF03288.16 gi|433593345|ref|YP_007296086.1| - 0.015 15.7 0.0 0.031 14.8 0.0 1.5 1 0 0 1 1 1 0 Poxvirus D5 protein-like DUF87 PF01935.17 gi|433593345|ref|YP_007296086.1| - 0.038 14.1 0.0 0.13 12.4 0.0 2.0 1 1 0 1 1 1 0 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|433593345|ref|YP_007296086.1| - 0.042 13.2 0.0 0.64 9.3 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family HHH_6 PF14579.6 gi|433593345|ref|YP_007296086.1| - 0.048 13.9 0.0 0.099 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif NACHT PF05729.12 gi|433593345|ref|YP_007296086.1| - 0.065 13.1 0.0 0.25 11.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|433593345|ref|YP_007296086.1| - 0.11 12.8 0.0 4.3 7.6 0.0 2.8 2 1 0 2 2 2 0 AAA domain TAT_signal PF10518.9 gi|433593346|ref|YP_007296087.1| - 0.034 14.0 1.7 0.058 13.3 1.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3591 PF12157.8 gi|433593346|ref|YP_007296087.1| - 0.091 11.4 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3591) TAT_signal PF10518.9 gi|433593347|ref|YP_007296088.1| - 0.15 11.9 0.5 0.29 11.1 0.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HTH_33 PF13592.6 gi|433593348|ref|YP_007296089.1| - 6.7e-23 80.1 1.7 2.3e-21 75.2 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn helix HTH_32 PF13565.6 gi|433593348|ref|YP_007296089.1| - 1.3e-12 48.2 5.1 5.7e-12 46.1 0.3 2.7 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 gi|433593348|ref|YP_007296089.1| - 9.5e-11 41.7 0.6 9.5e-11 41.7 0.6 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|433593348|ref|YP_007296089.1| - 1.4e-10 41.1 0.7 6.6e-10 38.9 0.2 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433593348|ref|YP_007296089.1| - 1.3e-07 31.1 0.3 3e-07 30.1 0.3 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_IS630 PF01710.16 gi|433593348|ref|YP_007296089.1| - 0.00034 20.6 0.3 0.0006 19.8 0.3 1.5 1 0 0 1 1 1 1 Transposase Sigma70_ECF PF07638.11 gi|433593348|ref|YP_007296089.1| - 0.00092 19.1 0.1 0.0016 18.4 0.1 1.5 1 1 0 1 1 1 1 ECF sigma factor Terminase_5 PF06056.12 gi|433593348|ref|YP_007296089.1| - 0.0032 17.3 0.2 0.0064 16.4 0.2 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_36 PF13730.6 gi|433593348|ref|YP_007296089.1| - 0.0037 17.2 0.1 0.013 15.5 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|433593348|ref|YP_007296089.1| - 0.011 15.6 0.2 0.031 14.2 0.1 1.8 2 0 0 2 2 2 0 HTH domain SMC_ScpB PF04079.16 gi|433593348|ref|YP_007296089.1| - 0.014 15.0 0.1 0.026 14.1 0.1 1.5 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB HTH_Tnp_1_2 PF13022.6 gi|433593348|ref|YP_007296089.1| - 0.018 15.2 1.0 0.029 14.5 0.6 1.6 1 1 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_psq PF05225.16 gi|433593348|ref|YP_007296089.1| - 0.019 14.7 0.1 0.053 13.3 0.1 1.9 1 1 0 1 1 1 0 helix-turn-helix, Psq domain HTH_Tnp_4 PF13613.6 gi|433593348|ref|YP_007296089.1| - 0.065 13.0 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_38 PF13936.6 gi|433593348|ref|YP_007296089.1| - 0.074 12.8 0.1 0.26 11.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain PadR PF03551.14 gi|433593348|ref|YP_007296089.1| - 0.078 13.0 0.2 0.17 11.9 0.2 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_Tnp_Tc3_2 PF01498.18 gi|433593348|ref|YP_007296089.1| - 0.08 13.2 0.5 0.5 10.7 0.0 2.5 3 1 1 4 4 4 0 Transposase MarR PF01047.22 gi|433593348|ref|YP_007296089.1| - 0.087 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF1778 PF08681.11 gi|433593348|ref|YP_007296089.1| - 0.096 12.6 0.6 1.3 9.0 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1778) TrmB PF01978.19 gi|433593348|ref|YP_007296089.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF488 PF04343.13 gi|433593348|ref|YP_007296089.1| - 0.17 12.5 2.4 0.25 11.9 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF488 HTH_3 PF01381.22 gi|433593348|ref|YP_007296089.1| - 0.26 11.4 4.6 1.6 8.8 0.0 3.6 4 1 1 5 5 4 0 Helix-turn-helix YolD PF08863.10 gi|433593348|ref|YP_007296089.1| - 0.67 10.0 4.5 4.8 7.3 0.4 3.0 3 0 0 3 3 3 0 YolD-like protein DDE_3 PF13358.6 gi|433593349|ref|YP_007296090.1| - 2e-36 124.9 0.0 2.3e-36 124.7 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease PAPS_reduct PF01507.19 gi|433593350|ref|YP_007296091.1| - 4.2e-15 56.2 0.0 7.6e-05 22.8 0.0 3.1 3 0 0 3 3 3 3 Phosphoadenosine phosphosulfate reductase family PP-binding_2 PF14573.6 gi|433593350|ref|YP_007296091.1| - 0.041 14.1 0.1 0.1 12.9 0.1 1.6 1 0 0 1 1 1 0 Acyl-carrier Diphthami_syn_2 PF01902.17 gi|433593350|ref|YP_007296091.1| - 0.058 12.9 0.0 0.12 11.8 0.0 1.5 2 0 0 2 2 2 0 Diphthamide synthase ATP_bind_3 PF01171.20 gi|433593350|ref|YP_007296091.1| - 0.097 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 PP-loop family UDPG_MGDP_dh_N PF03721.14 gi|433593351|ref|YP_007296092.1| - 8e-57 191.8 0.5 9.6e-56 188.3 0.1 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|433593351|ref|YP_007296092.1| - 2.3e-35 120.7 0.1 4.3e-35 119.8 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|433593351|ref|YP_007296092.1| - 3.9e-27 94.7 0.3 2.4e-26 92.2 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 3HCDH_N PF02737.18 gi|433593351|ref|YP_007296092.1| - 0.00035 20.5 0.0 0.0011 18.9 0.0 1.9 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|433593351|ref|YP_007296092.1| - 0.0056 16.7 0.0 0.015 15.3 0.0 1.9 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|433593351|ref|YP_007296092.1| - 0.02 14.5 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|433593351|ref|YP_007296092.1| - 0.039 13.2 0.0 0.07 12.4 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|433593351|ref|YP_007296092.1| - 0.054 14.1 0.2 0.47 11.1 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase WYL PF13280.6 gi|433593352|ref|YP_007296093.1| - 0.00038 20.5 0.0 0.00074 19.6 0.0 1.4 1 1 0 1 1 1 1 WYL domain NTP_transferase PF00483.23 gi|433593353|ref|YP_007296094.1| - 8.7e-43 146.7 0.0 1e-42 146.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|433593353|ref|YP_007296094.1| - 9.2e-16 58.6 0.0 1e-15 58.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|433593353|ref|YP_007296094.1| - 6.7e-06 26.0 0.0 1.3e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|433593353|ref|YP_007296094.1| - 0.012 15.5 0.1 0.016 15.0 0.1 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Polysacc_synt PF01943.17 gi|433593354|ref|YP_007296095.1| - 8.5e-20 71.3 17.0 8.5e-20 71.3 17.0 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|433593354|ref|YP_007296095.1| - 4.3e-18 65.8 21.4 1.5e-17 64.0 11.3 4.2 4 1 1 5 5 5 3 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|433593354|ref|YP_007296095.1| - 4.3e-11 42.6 13.4 4.3e-11 42.6 13.4 1.8 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|433593354|ref|YP_007296095.1| - 0.00019 20.2 20.6 0.0045 15.7 20.5 2.8 1 1 0 1 1 1 1 Lipid II flippase MurJ FAD_binding_4 PF01565.23 gi|433593355|ref|YP_007296096.1| - 1.1e-14 54.4 0.0 1.5e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Elong-fact-P_C PF09285.11 gi|433593355|ref|YP_007296096.1| - 0.16 11.8 0.0 0.35 10.6 0.0 1.6 1 0 0 1 1 1 0 Elongation factor P, C-terminal PS_pyruv_trans PF04230.13 gi|433593356|ref|YP_007296097.1| - 4.1e-29 102.4 0.1 5.3e-29 102.0 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase MipZ PF09140.11 gi|433593356|ref|YP_007296097.1| - 0.073 12.3 0.0 0.15 11.3 0.0 1.5 1 0 0 1 1 1 0 ATPase MipZ Fe-ADH PF00465.19 gi|433593356|ref|YP_007296097.1| - 0.24 10.2 0.0 0.86 8.4 0.0 1.8 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase Glycos_transf_2 PF00535.26 gi|433593357|ref|YP_007296098.1| - 7.2e-28 97.5 0.1 1.3e-27 96.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|433593357|ref|YP_007296098.1| - 8.1e-14 52.1 0.0 1.6e-13 51.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|433593357|ref|YP_007296098.1| - 1.1e-07 31.6 0.0 1.7e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DDE_Tnp_IS66 PF03050.14 gi|433593358|ref|YP_007296099.1| - 2.7e-49 168.2 0.1 2.7e-49 168.2 0.1 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.12 gi|433593358|ref|YP_007296099.1| - 7.4e-09 36.1 7.8 2e-08 34.7 7.8 1.8 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.7 gi|433593358|ref|YP_007296099.1| - 9e-06 26.0 5.0 9e-06 26.0 5.0 2.7 3 0 0 3 3 1 1 zinc-finger binding domain of transposase IS66 MscS_porin PF12795.7 gi|433593358|ref|YP_007296099.1| - 9.7e-06 25.3 6.6 1.7e-05 24.5 6.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.16 gi|433593358|ref|YP_007296099.1| - 0.00055 20.4 7.2 0.0011 19.4 7.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF16 UPF0242 PF06785.11 gi|433593358|ref|YP_007296099.1| - 0.0015 18.7 13.2 0.0025 17.9 13.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus HSBP1 PF06825.12 gi|433593358|ref|YP_007296099.1| - 0.0024 17.7 6.2 0.016 15.0 0.8 2.6 1 1 0 2 2 2 1 Heat shock factor binding protein 1 SKA1 PF07160.12 gi|433593358|ref|YP_007296099.1| - 0.0035 17.2 1.0 0.0057 16.5 1.0 1.3 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 1 Herpes_UL14 PF03580.14 gi|433593358|ref|YP_007296099.1| - 0.0048 17.2 1.4 0.0088 16.3 1.4 1.4 1 0 0 1 1 1 1 Herpesvirus UL14-like protein Atg14 PF10186.9 gi|433593358|ref|YP_007296099.1| - 0.018 14.2 7.6 0.028 13.5 7.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DDE_Tnp_IS240 PF13610.6 gi|433593358|ref|YP_007296099.1| - 0.019 15.2 2.0 0.087 13.1 0.0 2.4 2 1 0 2 2 2 0 DDE domain YkyA PF10368.9 gi|433593358|ref|YP_007296099.1| - 0.021 14.5 9.5 0.035 13.8 9.5 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein HemX PF04375.14 gi|433593358|ref|YP_007296099.1| - 0.024 13.9 4.1 0.038 13.3 4.1 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase PKcGMP_CC PF16808.5 gi|433593358|ref|YP_007296099.1| - 0.026 14.4 26.3 0.13 12.1 6.8 2.6 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Fmp27_WPPW PF10359.9 gi|433593358|ref|YP_007296099.1| - 0.031 13.1 5.6 0.049 12.5 5.6 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Exonuc_VII_L PF02601.15 gi|433593358|ref|YP_007296099.1| - 0.036 13.6 3.6 0.064 12.8 3.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit ATG16 PF08614.11 gi|433593358|ref|YP_007296099.1| - 0.051 13.8 10.6 0.1 12.8 10.6 1.5 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|433593358|ref|YP_007296099.1| - 0.061 12.0 8.2 0.088 11.4 8.2 1.1 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|433593358|ref|YP_007296099.1| - 0.099 12.7 2.7 0.25 11.4 2.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon GAS PF13851.6 gi|433593358|ref|YP_007296099.1| - 0.11 11.9 9.7 0.2 11.0 9.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cortex-I_coil PF09304.10 gi|433593358|ref|YP_007296099.1| - 0.11 12.7 10.5 0.23 11.7 10.5 1.5 1 0 0 1 1 1 0 Cortexillin I, coiled coil Phage_GPO PF05929.11 gi|433593358|ref|YP_007296099.1| - 0.11 12.1 3.1 0.18 11.4 3.1 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF3552 PF12072.8 gi|433593358|ref|YP_007296099.1| - 0.11 11.9 15.6 0.2 11.1 15.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Terminase_4 PF05119.12 gi|433593358|ref|YP_007296099.1| - 0.14 12.6 0.7 0.73 10.3 0.2 2.3 2 0 0 2 2 2 0 Phage terminase, small subunit DUF1664 PF07889.12 gi|433593358|ref|YP_007296099.1| - 0.15 12.1 5.3 0.3 11.1 5.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|433593358|ref|YP_007296099.1| - 0.15 10.9 11.6 0.17 10.7 10.5 1.6 2 0 0 2 2 1 0 Spc7 kinetochore protein FliD_C PF07195.12 gi|433593358|ref|YP_007296099.1| - 0.17 11.3 3.8 0.26 10.7 3.8 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TMF_DNA_bd PF12329.8 gi|433593358|ref|YP_007296099.1| - 0.17 11.9 12.6 0.34 10.9 12.6 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.10 gi|433593358|ref|YP_007296099.1| - 0.18 12.0 5.5 0.39 10.9 5.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family CSN5_C PF18323.1 gi|433593358|ref|YP_007296099.1| - 0.19 12.7 0.7 5.4 8.0 0.8 2.6 2 0 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain FAM76 PF16046.5 gi|433593358|ref|YP_007296099.1| - 0.23 10.8 4.0 0.37 10.1 4.0 1.3 1 0 0 1 1 1 0 FAM76 protein WASH_WAHD PF11945.8 gi|433593358|ref|YP_007296099.1| - 0.27 10.7 7.2 0.39 10.2 7.2 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex DUF724 PF05266.14 gi|433593358|ref|YP_007296099.1| - 0.27 11.0 6.4 0.46 10.3 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Allexi_40kDa PF05549.11 gi|433593358|ref|YP_007296099.1| - 0.32 10.5 2.8 0.55 9.7 2.8 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3584 PF12128.8 gi|433593358|ref|YP_007296099.1| - 0.36 8.3 7.2 0.51 7.8 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TMPIT PF07851.13 gi|433593358|ref|YP_007296099.1| - 0.36 10.0 4.1 0.57 9.4 4.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein Flagellin_C PF00700.21 gi|433593358|ref|YP_007296099.1| - 0.39 11.1 1.2 0.79 10.1 1.2 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region ACCA PF03255.14 gi|433593358|ref|YP_007296099.1| - 0.5 10.2 5.0 1.3 8.9 5.0 1.7 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1910 PF08928.10 gi|433593358|ref|YP_007296099.1| - 0.66 10.0 3.8 1.7 8.6 3.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1910) LUC7 PF03194.15 gi|433593358|ref|YP_007296099.1| - 0.69 9.5 7.5 1.4 8.5 7.5 1.4 1 0 0 1 1 1 0 LUC7 N_terminus zf-FPG_IleRS PF06827.14 gi|433593358|ref|YP_007296099.1| - 0.81 9.6 4.3 8.7 6.3 0.2 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS ExsD PF16806.5 gi|433593358|ref|YP_007296099.1| - 1 9.3 5.1 14 5.6 4.3 2.1 2 0 0 2 2 2 0 Antiactivator protein ExsD DUF4407 PF14362.6 gi|433593358|ref|YP_007296099.1| - 1 8.7 3.5 1.7 7.9 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RmuC PF02646.16 gi|433593358|ref|YP_007296099.1| - 1.1 8.4 7.0 1.7 7.7 7.0 1.2 1 0 0 1 1 1 0 RmuC family FemAB PF02388.16 gi|433593358|ref|YP_007296099.1| - 1.1 8.0 6.1 1.7 7.4 6.1 1.1 1 0 0 1 1 1 0 FemAB family Fzo_mitofusin PF04799.13 gi|433593358|ref|YP_007296099.1| - 1.4 8.4 6.1 2.5 7.6 6.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region Zn-ribbon_8 PF09723.10 gi|433593358|ref|YP_007296099.1| - 1.6 8.9 5.5 14 5.9 0.8 2.7 2 0 0 2 2 2 0 Zinc ribbon domain DUF1465 PF07323.12 gi|433593358|ref|YP_007296099.1| - 1.8 8.4 6.9 1.4 8.7 3.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1465) DUF3450 PF11932.8 gi|433593358|ref|YP_007296099.1| - 2.1 7.6 15.5 1.5 8.1 10.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) DUF2203 PF09969.9 gi|433593358|ref|YP_007296099.1| - 2.1 9.1 8.1 5.8 7.7 6.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 gi|433593358|ref|YP_007296099.1| - 2.3 6.1 4.9 3.2 5.6 4.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MPS2 PF17060.5 gi|433593358|ref|YP_007296099.1| - 2.4 7.4 6.1 3.7 6.7 6.1 1.2 1 0 0 1 1 1 0 Monopolar spindle protein 2 Kre28 PF17097.5 gi|433593358|ref|YP_007296099.1| - 4 6.3 12.8 0.37 9.7 8.3 1.4 2 0 0 2 2 1 0 Spindle pole body component ABC_tran_CTD PF16326.5 gi|433593358|ref|YP_007296099.1| - 6.3 7.1 22.3 1 9.7 16.9 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain DLP_helical PF18709.1 gi|433593358|ref|YP_007296099.1| - 6.7 5.8 8.2 12 5.0 8.2 1.3 1 0 0 1 1 1 0 Dynamin-like helical domain DUF5359 PF17313.2 gi|433593359|ref|YP_007296100.1| - 0.12 12.4 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5359) Glycos_transf_1 PF00534.20 gi|433593360|ref|YP_007296101.1| - 5.4e-19 68.4 0.0 1.3e-18 67.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433593360|ref|YP_007296101.1| - 3.7e-16 59.8 0.0 8.5e-16 58.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|433593360|ref|YP_007296101.1| - 0.025 15.0 0.1 0.066 13.6 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferases group 1 DUF2206 PF09971.9 gi|433593361|ref|YP_007296102.1| - 9.1e-86 287.9 3.8 9.1e-86 287.9 3.8 2.8 3 0 0 3 3 3 1 Predicted membrane protein (DUF2206) PMT_2 PF13231.6 gi|433593361|ref|YP_007296102.1| - 0.00016 21.9 10.1 0.00016 21.9 10.1 4.8 3 1 3 6 6 6 1 Dolichyl-phosphate-mannose-protein mannosyltransferase UCR_UQCRX_QCR9 PF05365.12 gi|433593361|ref|YP_007296102.1| - 0.34 10.9 1.9 4.7 7.2 0.0 3.4 3 0 0 3 3 3 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like LisH_2 PF16045.5 gi|433593361|ref|YP_007296102.1| - 1.3 8.1 5.4 7.4 5.7 0.3 3.4 3 0 0 3 3 3 0 LisH Glycos_transf_1 PF00534.20 gi|433593362|ref|YP_007296103.1| - 7.2e-20 71.2 0.0 1.4e-19 70.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433593362|ref|YP_007296103.1| - 2e-16 60.7 0.0 3.7e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|433593362|ref|YP_007296103.1| - 3.2e-16 59.8 0.1 4.7e-16 59.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433593362|ref|YP_007296103.1| - 4.5e-15 56.5 0.0 7.4e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|433593362|ref|YP_007296103.1| - 1.3e-05 25.3 0.0 3.3e-05 23.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like DUF1949 PF09186.11 gi|433593362|ref|YP_007296103.1| - 0.017 15.0 1.6 2.5 8.1 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF1949) CLP1_P PF16575.5 gi|433593362|ref|YP_007296103.1| - 0.085 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Glycos_transf_1 PF00534.20 gi|433593363|ref|YP_007296104.1| - 7.7e-45 152.5 0.0 1.2e-44 151.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433593363|ref|YP_007296104.1| - 8.8e-35 120.1 0.2 2e-34 118.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|433593363|ref|YP_007296104.1| - 2.8e-31 108.8 0.1 6.1e-31 107.7 0.2 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433593363|ref|YP_007296104.1| - 5.1e-19 69.3 0.0 1.1e-18 68.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|433593363|ref|YP_007296104.1| - 1.6e-11 44.5 0.0 5.1e-11 42.8 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|433593363|ref|YP_007296104.1| - 4.1e-09 36.6 0.0 6e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|433593363|ref|YP_007296104.1| - 0.014 15.1 0.1 0.11 12.1 0.0 2.0 1 1 1 2 2 2 0 Starch synthase catalytic domain F420_oxidored PF03807.17 gi|433593363|ref|YP_007296104.1| - 0.067 13.8 0.0 1 10.0 0.0 2.6 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Sulfatase PF00884.23 gi|433593364|ref|YP_007296105.1| - 2e-45 155.5 0.3 2.7e-45 155.1 0.3 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|433593364|ref|YP_007296105.1| - 3.5e-09 36.7 0.1 0.00035 20.3 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|433593364|ref|YP_007296105.1| - 0.00019 20.2 0.0 0.00059 18.6 0.0 1.7 2 1 0 2 2 2 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.18 gi|433593364|ref|YP_007296105.1| - 0.00031 20.2 0.1 1 8.7 0.0 3.1 3 0 0 3 3 3 2 Metalloenzyme superfamily PG_binding_2 PF08823.11 gi|433593364|ref|YP_007296105.1| - 0.12 12.7 0.2 1.2 9.5 0.1 2.8 2 1 0 2 2 2 0 Putative peptidoglycan binding domain Glycos_transf_1 PF00534.20 gi|433593365|ref|YP_007296106.1| - 4.6e-31 107.7 0.0 6.6e-31 107.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|433593365|ref|YP_007296106.1| - 3.8e-27 95.3 0.0 1.4e-26 93.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|433593365|ref|YP_007296106.1| - 8.4e-23 81.2 1.3 8.4e-23 81.2 1.3 2.0 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|433593365|ref|YP_007296106.1| - 1.1e-18 68.1 3.8 1.1e-18 68.1 3.8 2.1 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|433593365|ref|YP_007296106.1| - 0.02 15.3 0.1 0.41 11.1 0.0 2.6 2 1 0 2 2 2 0 Glycosyl transferases group 1 OrfB_IS605 PF01385.19 gi|433593366|ref|YP_007296107.1| - 4e-31 107.7 0.3 7.4e-31 106.9 0.3 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|433593366|ref|YP_007296107.1| - 7.6e-17 61.0 0.1 1.4e-16 60.1 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|433593366|ref|YP_007296107.1| - 0.077 13.4 0.4 0.22 11.9 0.4 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar HATPase_c_3 PF13589.6 gi|433593368|ref|YP_007296109.1| - 0.1 12.4 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MCM PF00493.23 gi|433593370|ref|YP_007296111.1| - 9.2e-76 253.9 0.0 1.4e-75 253.2 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|433593370|ref|YP_007296111.1| - 2e-25 89.1 0.2 3.8e-25 88.2 0.2 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|433593370|ref|YP_007296111.1| - 1.6e-21 76.5 2.8 4.2e-21 75.2 2.8 1.8 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|433593370|ref|YP_007296111.1| - 1.7e-10 41.4 0.6 6.2e-10 39.6 0.6 1.9 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|433593370|ref|YP_007296111.1| - 2.6e-10 40.0 0.0 2.1e-05 24.0 0.0 2.5 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|433593370|ref|YP_007296111.1| - 7.4e-09 35.7 0.0 2.1e-08 34.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|433593370|ref|YP_007296111.1| - 4.6e-05 23.9 2.3 0.00098 19.5 0.7 2.9 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|433593370|ref|YP_007296111.1| - 0.00056 19.6 0.0 0.0024 17.6 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|433593370|ref|YP_007296111.1| - 0.0021 18.5 0.1 0.0084 16.5 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|433593370|ref|YP_007296111.1| - 0.0023 18.2 0.1 0.018 15.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|433593370|ref|YP_007296111.1| - 0.0029 17.4 0.0 0.03 14.0 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain FtsK_SpoIIIE PF01580.18 gi|433593370|ref|YP_007296111.1| - 0.0084 15.5 0.6 0.16 11.3 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_18 PF13238.6 gi|433593370|ref|YP_007296111.1| - 0.0093 16.5 3.6 0.087 13.4 0.0 3.5 3 1 1 4 4 4 1 AAA domain AAA_29 PF13555.6 gi|433593370|ref|YP_007296111.1| - 0.015 15.1 0.0 0.04 13.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|433593370|ref|YP_007296111.1| - 0.032 13.9 1.1 0.06 13.1 0.2 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|433593370|ref|YP_007296111.1| - 0.038 14.5 0.1 0.32 11.5 0.0 2.4 2 1 0 2 2 2 0 ABC transporter NACHT PF05729.12 gi|433593370|ref|YP_007296111.1| - 0.047 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain HypA PF01155.19 gi|433593370|ref|YP_007296111.1| - 0.12 12.4 0.1 0.27 11.3 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|433593370|ref|YP_007296111.1| - 0.93 9.7 4.0 2.7 8.2 4.0 1.8 1 0 0 1 1 1 0 Zinc ribbon domain HALZ PF02183.18 gi|433593371|ref|YP_007296112.1| - 7e-05 23.0 1.2 0.00024 21.3 1.2 2.0 1 1 1 2 2 1 1 Homeobox associated leucine zipper Seadorna_VP6 PF07407.11 gi|433593371|ref|YP_007296112.1| - 0.0054 15.7 2.0 0.0069 15.4 2.0 1.1 1 0 0 1 1 1 1 Seadornavirus VP6 protein FlaC_arch PF05377.11 gi|433593371|ref|YP_007296112.1| - 0.0054 17.1 1.8 0.17 12.3 1.3 2.4 1 1 1 2 2 2 2 Flagella accessory protein C (FlaC) Golgin_A5 PF09787.9 gi|433593371|ref|YP_007296112.1| - 0.0062 16.0 4.7 0.0082 15.7 4.7 1.3 1 0 0 1 1 1 1 Golgin subfamily A member 5 DivIC PF04977.15 gi|433593371|ref|YP_007296112.1| - 0.0062 16.3 3.1 0.0062 16.3 3.1 3.1 1 1 2 3 3 3 1 Septum formation initiator bZIP_1 PF00170.21 gi|433593371|ref|YP_007296112.1| - 0.0065 16.5 0.5 0.0065 16.5 0.5 2.9 3 1 1 4 4 3 1 bZIP transcription factor Cep57_CLD_2 PF14197.6 gi|433593371|ref|YP_007296112.1| - 0.01 15.9 7.6 0.01 15.9 7.6 2.5 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 Mto2_bdg PF12808.7 gi|433593371|ref|YP_007296112.1| - 0.015 15.6 3.8 0.015 15.6 3.8 2.7 3 1 0 3 3 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region YabA PF06156.13 gi|433593371|ref|YP_007296112.1| - 0.019 15.6 4.8 0.032 14.9 4.1 1.9 1 1 0 1 1 1 0 Initiation control protein YabA D5_N PF08706.11 gi|433593371|ref|YP_007296112.1| - 0.023 15.0 4.2 0.67 10.2 4.2 2.1 1 1 0 1 1 1 0 D5 N terminal like DUF2730 PF10805.8 gi|433593371|ref|YP_007296112.1| - 0.037 14.1 0.7 0.071 13.2 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) DUF4201 PF13870.6 gi|433593371|ref|YP_007296112.1| - 0.037 13.8 8.3 0.044 13.5 7.1 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) Shugoshin_N PF07558.11 gi|433593371|ref|YP_007296112.1| - 0.056 13.3 1.4 0.071 13.0 0.2 1.8 2 0 0 2 2 1 0 Shugoshin N-terminal coiled-coil region NPV_P10 PF05531.12 gi|433593371|ref|YP_007296112.1| - 0.069 13.6 0.3 1.9 9.0 0.1 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF5024 PF16427.5 gi|433593371|ref|YP_007296112.1| - 0.074 13.4 0.3 0.15 12.4 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5024) Fez1 PF06818.15 gi|433593371|ref|YP_007296112.1| - 0.12 12.8 10.7 0.17 12.3 10.7 1.2 1 0 0 1 1 1 0 Fez1 Snapin_Pallidin PF14712.6 gi|433593371|ref|YP_007296112.1| - 0.13 12.7 4.4 0.71 10.3 1.3 2.3 1 1 1 2 2 2 0 Snapin/Pallidin Rootletin PF15035.6 gi|433593371|ref|YP_007296112.1| - 0.21 11.6 14.4 0.42 10.6 13.4 1.8 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion HemX PF04375.14 gi|433593371|ref|YP_007296112.1| - 0.39 10.0 7.7 0.61 9.3 7.8 1.3 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Hemagglutinin PF00509.18 gi|433593371|ref|YP_007296112.1| - 0.69 8.2 1.5 0.83 8.0 1.5 1.1 1 0 0 1 1 1 0 Haemagglutinin MctB PF11382.8 gi|433593371|ref|YP_007296112.1| - 0.7 9.5 4.0 0.31 10.7 0.8 1.9 1 1 0 1 1 1 0 Copper transport outer membrane protein, MctB DUF3450 PF11932.8 gi|433593371|ref|YP_007296112.1| - 0.81 8.9 8.1 0.14 11.4 3.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Prefoldin_2 PF01920.20 gi|433593371|ref|YP_007296112.1| - 1 9.4 9.0 0.53 10.3 0.8 2.6 1 1 1 2 2 2 0 Prefoldin subunit Atg14 PF10186.9 gi|433593371|ref|YP_007296112.1| - 1.2 8.1 10.4 1.5 7.8 10.4 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 TMPIT PF07851.13 gi|433593371|ref|YP_007296112.1| - 1.2 8.3 5.1 1.6 7.9 5.1 1.1 1 0 0 1 1 1 0 TMPIT-like protein Cep57_MT_bd PF06657.13 gi|433593371|ref|YP_007296112.1| - 1.3 9.5 9.5 1.4 9.4 3.5 2.7 1 1 2 3 3 3 0 Centrosome microtubule-binding domain of Cep57 Fmp27_WPPW PF10359.9 gi|433593371|ref|YP_007296112.1| - 1.4 7.7 8.3 1.7 7.4 8.3 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain FUSC PF04632.12 gi|433593371|ref|YP_007296112.1| - 1.6 7.2 6.7 1.7 7.1 6.7 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF812 PF05667.11 gi|433593371|ref|YP_007296112.1| - 2.2 7.1 13.4 5.1 5.9 13.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) V_ATPase_I PF01496.19 gi|433593371|ref|YP_007296112.1| - 2.3 6.1 4.0 2.5 5.9 4.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ABC_tran_CTD PF16326.5 gi|433593371|ref|YP_007296112.1| - 2.6 8.3 14.8 2.4 8.5 5.9 2.7 2 1 1 3 3 2 0 ABC transporter C-terminal domain APG6_N PF17675.1 gi|433593371|ref|YP_007296112.1| - 3 8.4 22.8 0.14 12.7 11.8 2.2 1 1 1 2 2 2 0 Apg6 coiled-coil region Seryl_tRNA_N PF02403.22 gi|433593371|ref|YP_007296112.1| - 3.4 8.0 11.2 0.1 12.8 1.2 2.3 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CENP-H PF05837.12 gi|433593371|ref|YP_007296112.1| - 4.7 7.7 13.3 69 3.9 13.3 2.2 1 1 0 1 1 1 0 Centromere protein H (CENP-H) Spc7 PF08317.11 gi|433593371|ref|YP_007296112.1| - 4.9 5.9 18.6 0.089 11.7 7.1 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein HTH_45 PF14947.6 gi|433593372|ref|YP_007296113.1| - 3e-06 27.1 0.0 0.0035 17.3 0.0 2.7 3 0 0 3 3 3 2 Winged helix-turn-helix MarR_2 PF12802.7 gi|433593372|ref|YP_007296113.1| - 4.8e-05 23.1 0.0 0.022 14.6 0.0 2.9 2 1 1 3 3 3 1 MarR family DUF505 PF04458.12 gi|433593372|ref|YP_007296113.1| - 0.00011 20.7 0.1 0.039 12.3 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF505) Replic_Relax PF13814.6 gi|433593372|ref|YP_007296113.1| - 0.00012 22.2 0.1 0.33 11.0 0.1 2.3 1 1 0 2 2 2 2 Replication-relaxation HTH_23 PF13384.6 gi|433593372|ref|YP_007296113.1| - 0.00029 20.5 0.0 0.051 13.4 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 gi|433593372|ref|YP_007296113.1| - 0.0005 19.6 0.4 0.71 9.5 0.1 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Dimerisation2 PF16864.5 gi|433593372|ref|YP_007296113.1| - 0.0014 18.6 0.0 1.5 8.9 0.0 2.2 2 0 0 2 2 2 2 Dimerisation domain DUF2250 PF10007.9 gi|433593372|ref|YP_007296113.1| - 0.005 16.9 0.1 0.1 12.7 0.0 2.4 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.7 gi|433593372|ref|YP_007296113.1| - 0.0058 16.7 0.0 0.033 14.2 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|433593372|ref|YP_007296113.1| - 0.01 15.7 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|433593372|ref|YP_007296113.1| - 0.016 15.4 0.0 0.035 14.3 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|433593372|ref|YP_007296113.1| - 0.019 14.9 0.0 0.087 12.8 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|433593372|ref|YP_007296113.1| - 0.048 14.0 0.0 0.18 12.2 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator DUF2408 PF10303.9 gi|433593372|ref|YP_007296113.1| - 0.068 13.7 0.3 0.11 13.1 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) ANTAR PF03861.14 gi|433593372|ref|YP_007296113.1| - 0.12 12.2 0.3 0.41 10.5 0.0 2.0 2 0 0 2 2 2 0 ANTAR domain MarR PF01047.22 gi|433593372|ref|YP_007296113.1| - 0.12 12.3 0.0 10 6.1 0.0 2.4 2 0 0 2 2 2 0 MarR family RINT1_TIP1 PF04437.13 gi|433593373|ref|YP_007296114.1| - 0.029 13.3 0.0 0.029 13.3 0.0 1.1 1 0 0 1 1 1 0 RINT-1 / TIP-1 family DDE_3 PF13358.6 gi|433593374|ref|YP_007296115.1| - 1.6e-14 53.9 0.0 1.5e-13 50.8 0.0 2.1 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|433593374|ref|YP_007296115.1| - 2.3e-11 44.1 0.3 9.4e-11 42.2 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|433593374|ref|YP_007296115.1| - 4.4e-10 39.4 0.0 1.4e-09 37.9 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433593374|ref|YP_007296115.1| - 6.7e-09 35.3 0.0 1.5e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|433593374|ref|YP_007296115.1| - 1.2e-05 24.8 0.0 8.6e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|433593374|ref|YP_007296115.1| - 2.7e-05 24.2 0.0 6.8e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|433593374|ref|YP_007296115.1| - 0.0018 18.3 0.1 0.0041 17.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|433593374|ref|YP_007296115.1| - 0.0023 17.4 0.0 0.0074 15.8 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 DDE_1 PF03184.19 gi|433593374|ref|YP_007296115.1| - 0.0027 17.4 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF746 PF05344.11 gi|433593374|ref|YP_007296115.1| - 0.016 15.1 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.6 gi|433593374|ref|YP_007296115.1| - 0.041 14.4 0.0 0.091 13.3 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.12 gi|433593374|ref|YP_007296115.1| - 0.058 13.1 0.1 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 rve PF00665.26 gi|433593374|ref|YP_007296115.1| - 0.064 13.5 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain Phage_int_SAM_5 PF13102.6 gi|433593375|ref|YP_007296116.1| - 1.9e-08 34.5 0.0 3.2e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_integrase PF00589.22 gi|433593375|ref|YP_007296116.1| - 5.7e-06 26.2 0.4 7.4e-05 22.6 0.4 2.4 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|433593375|ref|YP_007296116.1| - 0.00079 19.7 0.3 0.031 14.6 0.2 2.7 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain CHASE8 PF17152.4 gi|433593375|ref|YP_007296116.1| - 0.038 14.2 0.0 0.24 11.6 0.0 2.2 2 0 0 2 2 2 0 Periplasmic sensor domain RAMPs PF03787.15 gi|433593378|ref|YP_007296119.1| - 0.025 14.6 0.9 0.22 11.6 0.1 2.6 2 1 0 2 2 2 0 RAMP superfamily Ag332 PF04671.12 gi|433593381|ref|YP_007296122.1| - 0.008 16.1 0.5 0.017 15.0 0.5 1.6 1 0 0 1 1 1 1 Erythrocyte membrane-associated giant protein antigen 332 TAT_signal PF10518.9 gi|433593381|ref|YP_007296122.1| - 0.026 14.4 2.7 0.053 13.4 2.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MarR_2 PF12802.7 gi|433593383|ref|YP_007296124.1| - 3.7e-07 29.9 0.0 4.5e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|433593383|ref|YP_007296124.1| - 8.9e-07 28.4 0.0 1.4e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|433593383|ref|YP_007296124.1| - 0.00043 20.3 0.0 0.00058 19.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|433593383|ref|YP_007296124.1| - 0.0018 18.0 0.0 0.0039 17.0 0.0 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|433593383|ref|YP_007296124.1| - 0.0061 16.4 0.0 0.0081 16.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|433593383|ref|YP_007296124.1| - 0.0062 17.0 0.0 0.0082 16.6 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|433593383|ref|YP_007296124.1| - 0.023 14.4 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|433593383|ref|YP_007296124.1| - 0.034 14.0 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain RHH_1 PF01402.21 gi|433593384|ref|YP_007296125.1| - 4.3e-09 36.0 0.2 8.6e-09 35.0 0.2 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|433593384|ref|YP_007296125.1| - 7.2e-05 22.9 0.0 0.0001 22.4 0.0 1.2 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_8 PF17723.1 gi|433593384|ref|YP_007296125.1| - 0.046 13.9 0.0 0.061 13.5 0.0 1.2 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family ParE_toxin PF05016.15 gi|433593385|ref|YP_007296126.1| - 0.00091 19.8 0.1 0.0014 19.2 0.1 1.3 1 1 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE DDE_Tnp_1 PF01609.21 gi|433593386|ref|YP_007296127.1| - 5.4e-12 45.8 0.0 1.5e-11 44.3 0.0 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|433593386|ref|YP_007296127.1| - 0.00089 17.6 0.0 0.11 10.7 0.0 2.5 2 1 0 2 2 2 2 Transposase DDE domain group 1 FixS PF03597.15 gi|433593386|ref|YP_007296127.1| - 0.048 13.4 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type DUF1641 PF07849.11 gi|433593386|ref|YP_007296127.1| - 0.054 13.4 1.6 0.088 12.7 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1641) OrfB_IS605 PF01385.19 gi|433593387|ref|YP_007296128.1| - 2e-27 95.8 0.1 6.1e-27 94.2 0.0 1.9 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|433593387|ref|YP_007296128.1| - 4.4e-21 74.6 0.9 9.1e-21 73.6 0.9 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|433593387|ref|YP_007296128.1| - 0.0024 18.1 0.9 0.006 16.9 0.9 1.6 1 0 0 1 1 1 1 C1 domain A2L_zn_ribbon PF08792.10 gi|433593387|ref|YP_007296128.1| - 0.15 11.8 3.4 0.4 10.5 3.4 1.7 1 0 0 1 1 1 0 A2L zinc ribbon domain Ribosomal_L37ae PF01780.19 gi|433593387|ref|YP_007296128.1| - 0.19 11.9 2.4 0.44 10.7 0.9 2.2 2 0 0 2 2 2 0 Ribosomal L37ae protein family DUF86 PF01934.17 gi|433593388|ref|YP_007296129.1| - 1.4e-08 34.6 0.1 1.6e-08 34.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Glu-tRNAGln PF02686.15 gi|433593388|ref|YP_007296129.1| - 0.012 15.9 0.3 0.016 15.5 0.3 1.2 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit HTH_20 PF12840.7 gi|433593389|ref|YP_007296130.1| - 0.0052 16.8 0.4 0.0076 16.3 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433593389|ref|YP_007296130.1| - 0.0055 16.5 0.2 0.0083 15.9 0.2 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain ZapA PF05164.13 gi|433593389|ref|YP_007296130.1| - 0.13 12.7 0.1 0.27 11.7 0.1 1.5 1 0 0 1 1 1 0 Cell division protein ZapA OrfB_Zn_ribbon PF07282.11 gi|433593391|ref|YP_007296132.1| - 1.4e-22 79.4 1.4 3.1e-22 78.3 1.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|433593391|ref|YP_007296132.1| - 0.0001 22.5 0.1 0.00027 21.2 0.0 1.7 2 0 0 2 2 2 1 Probable transposase HypA PF01155.19 gi|433593391|ref|YP_007296132.1| - 0.078 13.0 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|433593391|ref|YP_007296132.1| - 0.95 9.2 13.3 4.2 7.2 0.6 3.5 3 0 0 3 3 3 0 Rubredoxin metal binding domain RNA_POL_M_15KD PF02150.16 gi|433593391|ref|YP_007296132.1| - 4.1 7.4 6.5 1.6 8.6 3.4 2.0 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.6 gi|433593391|ref|YP_007296132.1| - 7 6.5 10.6 1.4 8.8 3.9 2.8 2 1 1 3 3 3 0 zinc-ribbon domain AAA_31 PF13614.6 gi|433593392|ref|YP_007296133.1| - 1.2e-35 123.1 0.0 1.5e-35 122.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|433593392|ref|YP_007296133.1| - 5.3e-17 62.1 0.0 7.5e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|433593392|ref|YP_007296133.1| - 1.6e-07 31.1 0.2 4.9e-05 22.9 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|433593392|ref|YP_007296133.1| - 1.9e-07 30.7 0.3 1.2e-05 24.8 0.1 2.2 1 1 0 2 2 2 1 ATPase MipZ ParA PF10609.9 gi|433593392|ref|YP_007296133.1| - 4.2e-07 29.7 0.0 0.0032 17.0 0.0 2.3 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|433593392|ref|YP_007296133.1| - 1.3e-05 24.8 0.1 0.058 12.9 0.0 2.4 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|433593392|ref|YP_007296133.1| - 0.00051 19.3 1.1 0.0014 17.9 0.2 2.0 2 1 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|433593392|ref|YP_007296133.1| - 0.0031 16.8 3.1 0.014 14.7 0.1 2.8 2 1 0 3 3 3 1 VirC1 protein RuvX PF03652.15 gi|433593392|ref|YP_007296133.1| - 0.12 12.7 0.0 0.24 11.8 0.0 1.4 1 0 0 1 1 1 0 Holliday junction resolvase fn3_5 PF06280.12 gi|433593393|ref|YP_007296134.1| - 0.069 13.8 0.8 0.088 13.5 0.8 1.3 1 0 0 1 1 1 0 Fn3-like domain Glycoprotein_G PF00802.19 gi|433593393|ref|YP_007296134.1| - 0.087 12.2 1.4 0.1 12.0 1.4 1.3 1 0 0 1 1 1 0 Pneumovirus attachment glycoprotein G DDE_Tnp_1 PF01609.21 gi|433593394|ref|YP_007296135.1| - 0.012 15.3 0.0 0.024 14.3 0.0 1.5 1 1 0 1 1 1 0 Transposase DDE domain OrfB_IS605 PF01385.19 gi|433593397|ref|YP_007296138.1| - 2.5e-22 79.4 0.6 5.3e-22 78.3 0.6 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|433593397|ref|YP_007296138.1| - 5.4e-21 74.3 3.0 1e-20 73.4 0.2 2.7 3 0 0 3 3 3 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|433593397|ref|YP_007296138.1| - 1.9e-07 30.5 0.2 3.5e-07 29.6 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|433593397|ref|YP_007296138.1| - 0.093 12.9 5.7 12 6.1 5.7 2.7 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|433593397|ref|YP_007296138.1| - 0.21 11.6 2.6 0.24 11.5 1.3 1.8 2 0 0 2 2 2 0 Double zinc ribbon Rubredoxin_2 PF18073.1 gi|433593397|ref|YP_007296138.1| - 1.5 8.6 4.5 2.5 7.9 2.3 2.4 2 1 0 2 2 2 0 Rubredoxin metal binding domain HTH_23 PF13384.6 gi|433593398|ref|YP_007296139.1| - 2e-05 24.2 0.1 4.4e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.19 gi|433593398|ref|YP_007296139.1| - 0.00011 22.0 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|433593398|ref|YP_007296139.1| - 0.007 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|433593398|ref|YP_007296139.1| - 0.036 14.2 0.1 0.096 12.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|433593398|ref|YP_007296139.1| - 0.042 13.8 0.0 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 MarR family PIN_3 PF13470.6 gi|433593399|ref|YP_007296140.1| - 5.5e-18 65.8 0.2 6.5e-18 65.6 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 gi|433593399|ref|YP_007296140.1| - 0.00093 19.7 0.4 0.0016 18.9 0.4 1.5 1 1 0 1 1 1 1 PIN domain PurA PF04845.13 gi|433593399|ref|YP_007296140.1| - 0.069 12.5 0.0 0.09 12.1 0.0 1.1 1 0 0 1 1 1 0 PurA ssDNA and RNA-binding protein MazE_antitoxin PF04014.18 gi|433593400|ref|YP_007296141.1| - 1.6e-08 34.3 0.1 2.8e-08 33.5 0.0 1.4 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|433593400|ref|YP_007296141.1| - 0.0031 17.9 0.1 0.0049 17.3 0.1 1.6 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin MraZ PF02381.18 gi|433593400|ref|YP_007296141.1| - 0.0049 16.8 0.0 0.0081 16.1 0.0 1.4 1 1 0 1 1 1 1 MraZ protein, putative antitoxin-like MarR_2 PF12802.7 gi|433593403|ref|YP_007296144.1| - 0.0045 16.8 0.0 0.008 16.0 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|433593403|ref|YP_007296144.1| - 0.01 16.2 0.0 0.46 10.9 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator HTH_IclR PF09339.10 gi|433593403|ref|YP_007296144.1| - 0.011 15.5 0.0 0.037 13.8 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|433593403|ref|YP_007296144.1| - 0.016 15.3 0.1 0.034 14.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 gi|433593403|ref|YP_007296144.1| - 0.018 14.9 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|433593403|ref|YP_007296144.1| - 0.035 13.9 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain GntR PF00392.21 gi|433593403|ref|YP_007296144.1| - 0.048 13.3 0.0 0.17 11.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Phage_NinH PF06322.11 gi|433593403|ref|YP_007296144.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein TmoB PF06234.12 gi|433593403|ref|YP_007296144.1| - 0.1 12.7 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Toluene-4-monooxygenase system protein B (TmoB) HTH_36 PF13730.6 gi|433593403|ref|YP_007296144.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|433593403|ref|YP_007296144.1| - 0.12 12.6 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|433593403|ref|YP_007296144.1| - 0.16 11.6 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ATPase_2 PF01637.18 gi|433593404|ref|YP_007296145.1| - 2e-24 86.8 0.0 1.2e-23 84.2 0.0 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|433593404|ref|YP_007296145.1| - 1.5e-19 70.3 0.0 2.8e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|433593404|ref|YP_007296145.1| - 5.6e-08 32.9 0.0 2.2e-07 30.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433593404|ref|YP_007296145.1| - 2e-06 28.3 0.7 6.3e-06 26.7 0.1 2.2 2 2 0 2 2 2 1 AAA ATPase domain MarR_2 PF12802.7 gi|433593404|ref|YP_007296145.1| - 0.0007 19.4 0.1 0.011 15.6 0.0 2.4 2 0 0 2 2 2 1 MarR family AAA_22 PF13401.6 gi|433593404|ref|YP_007296145.1| - 0.0019 18.5 0.0 0.005 17.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain HTH_24 PF13412.6 gi|433593404|ref|YP_007296145.1| - 0.0057 16.2 0.1 0.011 15.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF402 PF04167.13 gi|433593404|ref|YP_007296145.1| - 0.029 14.5 0.2 0.084 13.1 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF402) FaeA PF04703.12 gi|433593404|ref|YP_007296145.1| - 0.035 14.5 0.1 0.074 13.4 0.1 1.4 1 0 0 1 1 1 0 FaeA-like protein TrmB PF01978.19 gi|433593404|ref|YP_007296145.1| - 0.042 13.7 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|433593404|ref|YP_007296145.1| - 0.06 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_IclR PF09339.10 gi|433593404|ref|YP_007296145.1| - 0.11 12.4 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Peptidase_M78 PF06114.13 gi|433593405|ref|YP_007296146.1| - 0.0049 16.8 0.0 0.0086 16.0 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain SprT-like PF10263.9 gi|433593405|ref|YP_007296146.1| - 0.013 15.3 0.2 0.045 13.6 0.1 1.8 2 0 0 2 2 2 0 SprT-like family WXG100 PF06013.12 gi|433593405|ref|YP_007296146.1| - 0.047 13.9 0.4 14 6.0 0.0 3.2 3 0 0 3 3 3 0 Proteins of 100 residues with WXG MarR_2 PF12802.7 gi|433593407|ref|YP_007296148.1| - 2.9e-09 36.7 0.9 0.0017 18.2 0.2 2.6 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|433593407|ref|YP_007296148.1| - 2.8e-08 33.7 0.7 0.0028 17.7 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_27 PF13463.6 gi|433593407|ref|YP_007296148.1| - 1.2e-07 32.1 0.0 0.0016 18.9 0.0 2.4 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|433593407|ref|YP_007296148.1| - 6.8e-06 26.0 0.0 0.016 15.2 0.0 2.4 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|433593407|ref|YP_007296148.1| - 1.5e-05 24.6 2.7 0.013 15.3 0.5 2.7 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|433593407|ref|YP_007296148.1| - 1.6e-05 24.8 0.1 0.0011 19.0 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn helix Sigma70_r3 PF04539.16 gi|433593407|ref|YP_007296148.1| - 8.8e-05 22.5 0.0 0.018 15.1 0.0 2.5 2 0 0 2 2 2 1 Sigma-70 region 3 TrmB PF01978.19 gi|433593407|ref|YP_007296148.1| - 0.00037 20.3 0.0 0.2 11.6 0.0 2.9 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|433593407|ref|YP_007296148.1| - 0.00086 19.4 0.2 0.2 11.8 0.0 3.4 4 0 0 4 4 3 1 Helix-turn-helix domain GntR PF00392.21 gi|433593407|ref|YP_007296148.1| - 0.0011 18.5 0.4 0.57 9.9 0.0 3.4 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|433593407|ref|YP_007296148.1| - 0.0013 18.6 0.0 0.081 12.9 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|433593407|ref|YP_007296148.1| - 0.0026 17.3 0.0 0.24 11.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 gi|433593407|ref|YP_007296148.1| - 0.0031 17.3 0.0 0.39 10.5 0.0 2.5 2 0 0 2 2 2 1 HTH DNA binding domain Dimerisation2 PF16864.5 gi|433593407|ref|YP_007296148.1| - 0.012 15.5 0.0 0.35 10.9 0.0 2.2 2 0 0 2 2 2 0 Dimerisation domain HTH_23 PF13384.6 gi|433593407|ref|YP_007296148.1| - 0.018 14.8 0.0 4.4 7.2 0.0 2.7 2 0 0 2 2 2 0 Homeodomain-like domain Rrf2 PF02082.20 gi|433593407|ref|YP_007296148.1| - 0.031 14.6 0.0 7.1 7.1 0.0 2.5 2 0 0 2 2 2 0 Transcriptional regulator Sigma70_r4 PF04545.16 gi|433593407|ref|YP_007296148.1| - 0.038 13.5 0.0 1 9.0 0.0 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|433593407|ref|YP_007296148.1| - 0.074 13.0 0.0 0.91 9.5 0.0 2.2 2 0 0 2 2 2 0 HTH domain DUF1441 PF07278.11 gi|433593407|ref|YP_007296148.1| - 0.077 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1441) HTH_AsnC-type PF13404.6 gi|433593407|ref|YP_007296148.1| - 0.091 12.6 0.1 5.9 6.8 0.0 2.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_AraC PF00165.23 gi|433593407|ref|YP_007296148.1| - 0.11 12.7 0.0 21 5.4 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_15 PF12324.8 gi|433593407|ref|YP_007296148.1| - 0.11 12.5 0.0 0.84 9.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase RPA_interact_C PF14768.6 gi|433593409|ref|YP_007296150.1| - 0.0041 17.7 0.4 0.0054 17.3 0.4 1.2 1 0 0 1 1 1 1 Replication protein A interacting C-terminal zinc_ribbon_2 PF13240.6 gi|433593409|ref|YP_007296150.1| - 0.012 15.3 1.0 3.8 7.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|433593409|ref|YP_007296150.1| - 0.014 15.3 2.8 2.1 8.4 0.1 2.7 3 0 0 3 3 3 0 Nudix N-terminal DUF2318 PF10080.9 gi|433593409|ref|YP_007296150.1| - 0.018 15.2 0.1 0.022 14.8 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DZR PF12773.7 gi|433593409|ref|YP_007296150.1| - 0.019 15.0 0.6 0.029 14.4 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon GFA PF04828.14 gi|433593409|ref|YP_007296150.1| - 0.043 14.2 1.4 0.8 10.1 0.1 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DpnI PF06044.12 gi|433593409|ref|YP_007296150.1| - 0.085 12.5 0.3 0.1 12.2 0.3 1.2 1 0 0 1 1 1 0 Dam-replacing family Zn-ribbon_8 PF09723.10 gi|433593409|ref|YP_007296150.1| - 0.2 11.8 1.2 18 5.6 0.4 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|433593409|ref|YP_007296150.1| - 0.24 11.5 4.4 0.69 10.0 0.4 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain RNA_POL_M_15KD PF02150.16 gi|433593410|ref|YP_007296151.1| - 0.00019 21.2 2.4 0.00036 20.3 0.2 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit Rubredoxin_2 PF18073.1 gi|433593410|ref|YP_007296151.1| - 0.07 12.9 0.2 0.07 12.9 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain OrfB_Zn_ribbon PF07282.11 gi|433593410|ref|YP_007296151.1| - 0.3 11.1 1.9 0.64 10.0 1.5 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Exog_C PF18026.1 gi|433593411|ref|YP_007296152.1| - 0.11 12.5 1.3 1.2 9.2 0.7 2.2 2 0 0 2 2 2 0 Endo/exonuclease (EXOG) C-terminal domain DDE_Tnp_IS1595 PF12762.7 gi|433593412|ref|YP_007296153.1| - 2.9e-21 76.1 0.0 4.5e-21 75.5 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|433593412|ref|YP_007296153.1| - 3.6e-09 36.4 2.4 7e-09 35.5 2.4 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.9 gi|433593412|ref|YP_007296153.1| - 0.00031 20.8 0.0 0.00051 20.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.13 gi|433593412|ref|YP_007296153.1| - 0.00034 20.3 4.2 0.00095 18.9 4.2 1.8 1 0 0 1 1 1 1 InsA N-terminal domain ADK_lid PF05191.14 gi|433593412|ref|YP_007296153.1| - 0.019 14.9 0.1 0.11 12.5 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 gi|433593412|ref|YP_007296153.1| - 0.064 13.4 0.3 4 7.6 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2_4 PF13894.6 gi|433593412|ref|YP_007296153.1| - 0.39 11.7 1.6 1.6 9.7 0.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zf_UBZ PF18439.1 gi|433593412|ref|YP_007296153.1| - 0.47 10.1 1.5 9.1 6.0 0.2 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2H2 PF00096.26 gi|433593412|ref|YP_007296153.1| - 4.1 8.1 4.8 0.6 10.7 0.5 1.9 2 0 0 2 2 2 0 Zinc finger, C2H2 type MarR_2 PF12802.7 gi|433593413|ref|YP_007296154.1| - 1.2e-05 25.0 0.0 1.7e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|433593413|ref|YP_007296154.1| - 9.1e-05 22.3 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AbiEi_4 PF13338.6 gi|433593413|ref|YP_007296154.1| - 0.00055 20.0 0.2 0.00087 19.4 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin MarR PF01047.22 gi|433593413|ref|YP_007296154.1| - 0.0027 17.6 0.0 0.0046 16.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|433593413|ref|YP_007296154.1| - 0.0099 15.8 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|433593413|ref|YP_007296154.1| - 0.018 14.7 0.1 0.028 14.1 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RepC PF06504.11 gi|433593413|ref|YP_007296154.1| - 0.06 12.5 0.0 0.06 12.5 0.0 1.1 1 0 0 1 1 1 0 Replication protein C (RepC) DDE_Tnp_IS66 PF03050.14 gi|433593415|ref|YP_007296156.1| - 2.7e-49 168.2 0.1 2.7e-49 168.2 0.1 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.12 gi|433593415|ref|YP_007296156.1| - 7.4e-09 36.1 7.8 2e-08 34.7 7.8 1.8 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.7 gi|433593415|ref|YP_007296156.1| - 9e-06 26.0 5.0 9e-06 26.0 5.0 2.7 3 0 0 3 3 1 1 zinc-finger binding domain of transposase IS66 MscS_porin PF12795.7 gi|433593415|ref|YP_007296156.1| - 9.7e-06 25.3 6.6 1.7e-05 24.5 6.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.16 gi|433593415|ref|YP_007296156.1| - 0.00055 20.4 7.2 0.0011 19.4 7.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF16 UPF0242 PF06785.11 gi|433593415|ref|YP_007296156.1| - 0.0015 18.7 13.2 0.0025 17.9 13.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus HSBP1 PF06825.12 gi|433593415|ref|YP_007296156.1| - 0.0024 17.7 6.2 0.016 15.0 0.8 2.6 1 1 0 2 2 2 1 Heat shock factor binding protein 1 SKA1 PF07160.12 gi|433593415|ref|YP_007296156.1| - 0.0035 17.2 1.0 0.0057 16.5 1.0 1.3 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 1 Herpes_UL14 PF03580.14 gi|433593415|ref|YP_007296156.1| - 0.0048 17.2 1.4 0.0088 16.3 1.4 1.4 1 0 0 1 1 1 1 Herpesvirus UL14-like protein Atg14 PF10186.9 gi|433593415|ref|YP_007296156.1| - 0.018 14.2 7.6 0.028 13.5 7.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DDE_Tnp_IS240 PF13610.6 gi|433593415|ref|YP_007296156.1| - 0.019 15.2 2.0 0.087 13.1 0.0 2.4 2 1 0 2 2 2 0 DDE domain YkyA PF10368.9 gi|433593415|ref|YP_007296156.1| - 0.021 14.5 9.5 0.035 13.8 9.5 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein HemX PF04375.14 gi|433593415|ref|YP_007296156.1| - 0.024 13.9 4.1 0.038 13.3 4.1 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase PKcGMP_CC PF16808.5 gi|433593415|ref|YP_007296156.1| - 0.026 14.4 26.3 0.13 12.1 6.8 2.6 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Fmp27_WPPW PF10359.9 gi|433593415|ref|YP_007296156.1| - 0.031 13.1 5.6 0.049 12.5 5.6 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Exonuc_VII_L PF02601.15 gi|433593415|ref|YP_007296156.1| - 0.036 13.6 3.6 0.064 12.8 3.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit ATG16 PF08614.11 gi|433593415|ref|YP_007296156.1| - 0.051 13.8 10.6 0.1 12.8 10.6 1.5 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|433593415|ref|YP_007296156.1| - 0.061 12.0 8.2 0.088 11.4 8.2 1.1 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|433593415|ref|YP_007296156.1| - 0.099 12.7 2.7 0.25 11.4 2.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon GAS PF13851.6 gi|433593415|ref|YP_007296156.1| - 0.11 11.9 9.7 0.2 11.0 9.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cortex-I_coil PF09304.10 gi|433593415|ref|YP_007296156.1| - 0.11 12.7 10.5 0.23 11.7 10.5 1.5 1 0 0 1 1 1 0 Cortexillin I, coiled coil Phage_GPO PF05929.11 gi|433593415|ref|YP_007296156.1| - 0.11 12.1 3.1 0.18 11.4 3.1 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF3552 PF12072.8 gi|433593415|ref|YP_007296156.1| - 0.11 11.9 15.6 0.2 11.1 15.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Terminase_4 PF05119.12 gi|433593415|ref|YP_007296156.1| - 0.14 12.6 0.7 0.73 10.3 0.2 2.3 2 0 0 2 2 2 0 Phage terminase, small subunit DUF1664 PF07889.12 gi|433593415|ref|YP_007296156.1| - 0.15 12.1 5.3 0.3 11.1 5.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|433593415|ref|YP_007296156.1| - 0.15 10.9 11.6 0.17 10.7 10.5 1.6 2 0 0 2 2 1 0 Spc7 kinetochore protein FliD_C PF07195.12 gi|433593415|ref|YP_007296156.1| - 0.17 11.3 3.8 0.26 10.7 3.8 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TMF_DNA_bd PF12329.8 gi|433593415|ref|YP_007296156.1| - 0.17 11.9 12.6 0.34 10.9 12.6 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.10 gi|433593415|ref|YP_007296156.1| - 0.18 12.0 5.5 0.39 10.9 5.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family CSN5_C PF18323.1 gi|433593415|ref|YP_007296156.1| - 0.19 12.7 0.7 5.4 8.0 0.8 2.6 2 0 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain FAM76 PF16046.5 gi|433593415|ref|YP_007296156.1| - 0.23 10.8 4.0 0.37 10.1 4.0 1.3 1 0 0 1 1 1 0 FAM76 protein WASH_WAHD PF11945.8 gi|433593415|ref|YP_007296156.1| - 0.27 10.7 7.2 0.39 10.2 7.2 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex DUF724 PF05266.14 gi|433593415|ref|YP_007296156.1| - 0.27 11.0 6.4 0.46 10.3 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Allexi_40kDa PF05549.11 gi|433593415|ref|YP_007296156.1| - 0.32 10.5 2.8 0.55 9.7 2.8 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3584 PF12128.8 gi|433593415|ref|YP_007296156.1| - 0.36 8.3 7.2 0.51 7.8 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TMPIT PF07851.13 gi|433593415|ref|YP_007296156.1| - 0.36 10.0 4.1 0.57 9.4 4.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein Flagellin_C PF00700.21 gi|433593415|ref|YP_007296156.1| - 0.39 11.1 1.2 0.79 10.1 1.2 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region ACCA PF03255.14 gi|433593415|ref|YP_007296156.1| - 0.5 10.2 5.0 1.3 8.9 5.0 1.7 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1910 PF08928.10 gi|433593415|ref|YP_007296156.1| - 0.66 10.0 3.8 1.7 8.6 3.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1910) LUC7 PF03194.15 gi|433593415|ref|YP_007296156.1| - 0.69 9.5 7.5 1.4 8.5 7.5 1.4 1 0 0 1 1 1 0 LUC7 N_terminus zf-FPG_IleRS PF06827.14 gi|433593415|ref|YP_007296156.1| - 0.81 9.6 4.3 8.7 6.3 0.2 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS ExsD PF16806.5 gi|433593415|ref|YP_007296156.1| - 1 9.3 5.1 14 5.6 4.3 2.1 2 0 0 2 2 2 0 Antiactivator protein ExsD DUF4407 PF14362.6 gi|433593415|ref|YP_007296156.1| - 1 8.7 3.5 1.7 7.9 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RmuC PF02646.16 gi|433593415|ref|YP_007296156.1| - 1.1 8.4 7.0 1.7 7.7 7.0 1.2 1 0 0 1 1 1 0 RmuC family FemAB PF02388.16 gi|433593415|ref|YP_007296156.1| - 1.1 8.0 6.1 1.7 7.4 6.1 1.1 1 0 0 1 1 1 0 FemAB family Fzo_mitofusin PF04799.13 gi|433593415|ref|YP_007296156.1| - 1.4 8.4 6.1 2.5 7.6 6.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region Zn-ribbon_8 PF09723.10 gi|433593415|ref|YP_007296156.1| - 1.6 8.9 5.5 14 5.9 0.8 2.7 2 0 0 2 2 2 0 Zinc ribbon domain DUF1465 PF07323.12 gi|433593415|ref|YP_007296156.1| - 1.8 8.4 6.9 1.4 8.7 3.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1465) DUF3450 PF11932.8 gi|433593415|ref|YP_007296156.1| - 2.1 7.6 15.5 1.5 8.1 10.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) DUF2203 PF09969.9 gi|433593415|ref|YP_007296156.1| - 2.1 9.1 8.1 5.8 7.7 6.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 gi|433593415|ref|YP_007296156.1| - 2.3 6.1 4.9 3.2 5.6 4.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MPS2 PF17060.5 gi|433593415|ref|YP_007296156.1| - 2.4 7.4 6.1 3.7 6.7 6.1 1.2 1 0 0 1 1 1 0 Monopolar spindle protein 2 Kre28 PF17097.5 gi|433593415|ref|YP_007296156.1| - 4 6.3 12.8 0.37 9.7 8.3 1.4 2 0 0 2 2 1 0 Spindle pole body component ABC_tran_CTD PF16326.5 gi|433593415|ref|YP_007296156.1| - 6.3 7.1 22.3 1 9.7 16.9 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain DLP_helical PF18709.1 gi|433593415|ref|YP_007296156.1| - 6.7 5.8 8.2 12 5.0 8.2 1.3 1 0 0 1 1 1 0 Dynamin-like helical domain HPTransfase PF10090.9 gi|433593416|ref|YP_007296157.1| - 0.029 14.2 0.0 0.062 13.1 0.0 1.5 1 0 0 1 1 1 0 Histidine phosphotransferase C-terminal domain YdjM PF04307.14 gi|433593417|ref|YP_007296158.1| - 1.7e-10 40.5 12.3 2.2e-10 40.1 12.3 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|433593417|ref|YP_007296158.1| - 0.056 13.4 0.0 0.11 12.5 0.0 1.4 1 1 0 1 1 1 0 Zinc dependent phospholipase C MerC PF03203.14 gi|433593417|ref|YP_007296158.1| - 0.38 11.2 6.0 0.14 12.6 2.0 2.1 1 1 0 2 2 2 0 MerC mercury resistance protein TFIIB PF00382.19 gi|433593418|ref|YP_007296159.1| - 2e-47 159.1 2.9 3e-24 84.8 0.3 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|433593418|ref|YP_007296159.1| - 1.4e-14 53.3 2.0 2.4e-14 52.5 2.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|433593418|ref|YP_007296159.1| - 0.003 17.2 1.5 0.0079 15.9 1.5 1.7 1 0 0 1 1 1 1 A2L zinc ribbon domain Sigma70_r4 PF04545.16 gi|433593418|ref|YP_007296159.1| - 0.0067 15.9 2.5 0.097 12.2 0.1 3.4 3 1 1 4 4 4 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.11 gi|433593418|ref|YP_007296159.1| - 0.016 15.1 1.7 0.04 13.9 1.7 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2318 PF10080.9 gi|433593418|ref|YP_007296159.1| - 0.018 15.2 0.3 0.04 14.0 0.3 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Cyclin_N PF00134.23 gi|433593418|ref|YP_007296159.1| - 0.027 14.2 0.0 0.057 13.2 0.0 1.6 1 0 0 1 1 1 0 Cyclin, N-terminal domain DUF4503 PF14951.6 gi|433593418|ref|YP_007296159.1| - 0.055 11.9 0.4 0.1 11.0 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) Trm112p PF03966.16 gi|433593418|ref|YP_007296159.1| - 0.1 13.2 0.5 0.29 11.7 0.5 1.7 1 0 0 1 1 1 0 Trm112p-like protein RB_B PF01857.20 gi|433593418|ref|YP_007296159.1| - 0.11 12.5 0.0 0.35 10.9 0.0 1.9 1 1 1 2 2 2 0 Retinoblastoma-associated protein B domain zf_UBZ PF18439.1 gi|433593418|ref|YP_007296159.1| - 0.16 11.6 1.4 6.8 6.4 0.2 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Glycos_transf_2 PF00535.26 gi|433593419|ref|YP_007296160.1| - 6.1e-25 88.0 0.0 8.4e-25 87.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|433593419|ref|YP_007296160.1| - 0.00063 19.7 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|433593419|ref|YP_007296160.1| - 0.1 13.1 0.0 0.21 12.1 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 DDE_Tnp_1 PF01609.21 gi|433593421|ref|YP_007296162.1| - 1.9e-29 102.9 0.2 2.4e-29 102.5 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain Corona_3 PF04694.12 gi|433593421|ref|YP_007296162.1| - 0.0056 17.0 0.0 0.018 15.3 0.0 1.8 1 0 0 1 1 1 1 Coronavirus ORF3 protein DDE_Tnp_1_4 PF13701.6 gi|433593421|ref|YP_007296162.1| - 0.087 11.1 0.0 0.12 10.6 0.0 1.3 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_IS66 PF03050.14 gi|433593423|ref|YP_007296164.1| - 1.7e-47 162.2 0.4 1.7e-47 162.2 0.4 1.6 2 0 0 2 2 2 1 Transposase IS66 family Tropomyosin_1 PF12718.7 gi|433593423|ref|YP_007296164.1| - 7.2e-06 26.2 6.5 1.5e-05 25.1 6.5 1.5 1 0 0 1 1 1 1 Tropomyosin like ERM PF00769.19 gi|433593423|ref|YP_007296164.1| - 0.00014 21.8 0.9 0.00024 21.0 0.9 1.4 1 0 0 1 1 1 1 Ezrin/radixin/moesin family DDE_Tnp_IS240 PF13610.6 gi|433593423|ref|YP_007296164.1| - 0.00027 21.2 0.9 0.0016 18.7 0.0 2.3 2 1 0 2 2 2 1 DDE domain SlyX PF04102.12 gi|433593423|ref|YP_007296164.1| - 0.00095 19.7 8.4 0.0035 17.9 8.4 1.9 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.7 gi|433593423|ref|YP_007296164.1| - 0.0014 19.0 8.7 0.0014 19.0 8.7 2.5 3 0 0 3 3 1 1 zinc-finger binding domain of transposase IS66 Spc7 PF08317.11 gi|433593423|ref|YP_007296164.1| - 0.0023 16.9 4.7 0.0049 15.8 4.7 1.5 1 0 0 1 1 1 1 Spc7 kinetochore protein HOOK PF05622.12 gi|433593423|ref|YP_007296164.1| - 0.0032 15.7 7.2 0.005 15.1 7.2 1.2 1 0 0 1 1 1 1 HOOK protein Tmemb_cc2 PF10267.9 gi|433593423|ref|YP_007296164.1| - 0.0037 16.5 1.0 0.0061 15.8 1.0 1.3 1 0 0 1 1 1 1 Predicted transmembrane and coiled-coil 2 protein Atg14 PF10186.9 gi|433593423|ref|YP_007296164.1| - 0.013 14.6 3.5 0.022 13.9 3.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4472 PF14739.6 gi|433593423|ref|YP_007296164.1| - 0.017 15.8 4.3 0.017 15.8 4.3 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4472) DUF4763 PF15960.5 gi|433593423|ref|YP_007296164.1| - 0.025 13.9 5.2 0.048 13.0 5.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) FmiP_Thoc5 PF09766.9 gi|433593423|ref|YP_007296164.1| - 0.025 13.9 3.4 0.037 13.3 3.4 1.2 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 XLF PF09302.11 gi|433593423|ref|YP_007296164.1| - 0.033 14.4 2.5 0.54 10.4 3.0 2.1 2 0 0 2 2 2 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component Med4 PF10018.9 gi|433593423|ref|YP_007296164.1| - 0.044 13.4 4.6 0.086 12.5 4.6 1.4 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF3450 PF11932.8 gi|433593423|ref|YP_007296164.1| - 0.058 12.7 8.6 1.3 8.3 7.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) bZIP_1 PF00170.21 gi|433593423|ref|YP_007296164.1| - 0.059 13.5 9.4 0.063 13.4 6.7 2.2 1 1 1 2 2 2 0 bZIP transcription factor TMF_DNA_bd PF12329.8 gi|433593423|ref|YP_007296164.1| - 0.063 13.3 13.5 0.11 12.5 13.5 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF3552 PF12072.8 gi|433593423|ref|YP_007296164.1| - 0.1 12.0 9.7 0.19 11.1 9.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) HemX PF04375.14 gi|433593423|ref|YP_007296164.1| - 0.14 11.4 2.9 0.26 10.5 2.9 1.3 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF641 PF04859.12 gi|433593423|ref|YP_007296164.1| - 0.15 12.4 7.7 0.15 12.4 6.1 1.7 2 0 0 2 2 1 0 Plant protein of unknown function (DUF641) Fmp27_WPPW PF10359.9 gi|433593423|ref|YP_007296164.1| - 0.15 10.9 3.8 0.25 10.1 3.8 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain PKcGMP_CC PF16808.5 gi|433593423|ref|YP_007296164.1| - 0.16 11.8 18.8 0.23 11.4 3.1 2.4 1 1 1 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase PspA_IM30 PF04012.12 gi|433593423|ref|YP_007296164.1| - 0.18 11.4 8.8 0.42 10.1 8.8 1.6 1 0 0 1 1 1 0 PspA/IM30 family DUF4407 PF14362.6 gi|433593423|ref|YP_007296164.1| - 0.23 10.8 2.1 0.4 10.0 2.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ATG16 PF08614.11 gi|433593423|ref|YP_007296164.1| - 0.26 11.5 11.5 0.17 12.1 9.1 1.9 2 0 0 2 2 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|433593423|ref|YP_007296164.1| - 0.27 9.8 4.2 0.4 9.3 4.2 1.2 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.12 gi|433593423|ref|YP_007296164.1| - 0.29 11.2 2.4 0.64 10.1 2.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Csm1_N PF18504.1 gi|433593423|ref|YP_007296164.1| - 0.3 11.5 9.4 0.18 12.2 6.7 2.1 2 0 0 2 2 1 0 Csm1 N-terminal domain RPW8 PF05659.11 gi|433593423|ref|YP_007296164.1| - 0.37 10.5 2.6 0.65 9.7 2.6 1.4 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 FlaC_arch PF05377.11 gi|433593423|ref|YP_007296164.1| - 0.4 11.1 5.6 0.9 10.0 5.6 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF812 PF05667.11 gi|433593423|ref|YP_007296164.1| - 0.41 9.5 6.6 0.63 8.9 6.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Spc24 PF08286.11 gi|433593423|ref|YP_007296164.1| - 0.48 10.7 4.5 1.2 9.4 4.5 1.7 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 FemAB PF02388.16 gi|433593423|ref|YP_007296164.1| - 0.53 9.1 4.1 0.78 8.5 4.1 1.1 1 0 0 1 1 1 0 FemAB family DUF4200 PF13863.6 gi|433593423|ref|YP_007296164.1| - 0.59 10.6 14.9 0.054 13.9 10.0 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4200) MctB PF11382.8 gi|433593423|ref|YP_007296164.1| - 0.87 9.2 3.5 1.7 8.3 3.5 1.4 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB TMPIT PF07851.13 gi|433593423|ref|YP_007296164.1| - 1.4 8.1 3.2 2.4 7.3 3.2 1.2 1 0 0 1 1 1 0 TMPIT-like protein TMF_TATA_bd PF12325.8 gi|433593423|ref|YP_007296164.1| - 1.9 8.7 12.6 2.1 8.6 11.1 1.7 2 0 0 2 2 1 0 TATA element modulatory factor 1 TATA binding ABC_tran_CTD PF16326.5 gi|433593423|ref|YP_007296164.1| - 3.4 8.0 14.0 1.8 8.9 10.1 2.4 2 0 0 2 2 2 0 ABC transporter C-terminal domain GrpE PF01025.19 gi|433593423|ref|YP_007296164.1| - 3.4 7.3 7.7 7.6 6.2 7.7 1.5 1 0 0 1 1 1 0 GrpE ZapB PF06005.12 gi|433593423|ref|YP_007296164.1| - 10 6.7 16.5 8.7 6.9 13.1 2.5 2 0 0 2 2 2 0 Cell division protein ZapB DDE_Tnp_1 PF01609.21 gi|433593424|ref|YP_007296165.1| - 3.2e-10 40.0 3.3 4.9e-10 39.4 3.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593424|ref|YP_007296165.1| - 0.17 11.9 0.5 0.48 10.5 0.3 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|433593425|ref|YP_007296166.1| - 4.4e-27 95.1 0.0 6.1e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433593425|ref|YP_007296166.1| - 0.0015 17.9 0.1 0.0022 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|433593425|ref|YP_007296166.1| - 0.11 10.7 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 Elong_Iki1 PF10483.9 gi|433593426|ref|YP_007296167.1| - 0.064 12.7 0.0 0.073 12.6 0.0 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 DDE_Tnp_IS66 PF03050.14 gi|433593427|ref|YP_007296168.1| - 6.2e-49 167.0 0.2 6.2e-49 167.0 0.2 1.7 2 0 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.7 gi|433593427|ref|YP_007296168.1| - 1.7e-05 25.1 4.6 5.1e-05 23.6 4.6 1.9 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 bZIP_1 PF00170.21 gi|433593427|ref|YP_007296168.1| - 0.00031 20.8 6.0 0.0006 19.9 6.0 1.5 1 0 0 1 1 1 1 bZIP transcription factor GAS PF13851.6 gi|433593427|ref|YP_007296168.1| - 0.00065 19.1 5.1 0.0013 18.2 5.1 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.7 gi|433593427|ref|YP_007296168.1| - 0.0024 18.0 3.9 0.0053 16.9 3.9 1.5 1 0 0 1 1 1 1 Tropomyosin like Csm1_N PF18504.1 gi|433593427|ref|YP_007296168.1| - 0.003 17.9 2.6 0.0082 16.5 2.6 1.8 1 0 0 1 1 1 1 Csm1 N-terminal domain MCC-bdg_PDZ PF10506.9 gi|433593427|ref|YP_007296168.1| - 0.008 16.2 3.9 0.019 15.0 3.9 1.7 1 0 0 1 1 1 1 PDZ domain of MCC-2 bdg protein for Usher syndrome CENP-F_leu_zip PF10473.9 gi|433593427|ref|YP_007296168.1| - 0.013 15.5 8.3 0.031 14.3 8.3 1.6 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Taxilin PF09728.9 gi|433593427|ref|YP_007296168.1| - 0.03 13.5 4.9 0.048 12.8 4.9 1.2 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Ead_Ea22 PF13935.6 gi|433593427|ref|YP_007296168.1| - 0.042 14.5 1.9 0.083 13.5 0.2 2.4 2 0 0 2 2 2 0 Ead/Ea22-like protein Shugoshin_N PF07558.11 gi|433593427|ref|YP_007296168.1| - 0.064 13.1 2.9 0.13 12.1 2.9 1.5 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Spc24 PF08286.11 gi|433593427|ref|YP_007296168.1| - 0.08 13.2 2.2 0.19 12.0 2.0 1.7 2 0 0 2 2 1 0 Spc24 subunit of Ndc80 DDE_Tnp_IS240 PF13610.6 gi|433593427|ref|YP_007296168.1| - 0.092 13.0 1.3 0.14 12.4 0.0 2.0 2 1 0 2 2 1 0 DDE domain CCDC106 PF15794.5 gi|433593427|ref|YP_007296168.1| - 0.1 12.3 2.7 0.19 11.4 2.7 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 106 YabA PF06156.13 gi|433593427|ref|YP_007296168.1| - 0.14 12.8 1.4 0.37 11.4 1.4 1.7 1 0 0 1 1 1 0 Initiation control protein YabA TMF_DNA_bd PF12329.8 gi|433593427|ref|YP_007296168.1| - 0.15 12.0 7.1 0.36 10.9 7.1 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding APC_N_CC PF16689.5 gi|433593427|ref|YP_007296168.1| - 0.18 11.9 7.5 0.52 10.4 7.5 1.8 1 0 0 1 1 1 0 Coiled-coil N-terminus of APC, dimerisation domain DUF4472 PF14739.6 gi|433593427|ref|YP_007296168.1| - 0.18 12.6 6.5 0.099 13.4 2.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4472) FTA4 PF13093.6 gi|433593427|ref|YP_007296168.1| - 0.19 11.6 3.9 1.9 8.3 1.0 2.5 2 1 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 bZIP_2 PF07716.15 gi|433593427|ref|YP_007296168.1| - 0.22 11.6 8.5 0.32 11.1 7.2 2.0 1 1 0 1 1 1 0 Basic region leucine zipper MPS2 PF17060.5 gi|433593427|ref|YP_007296168.1| - 0.26 10.5 4.6 0.48 9.6 4.6 1.3 1 0 0 1 1 1 0 Monopolar spindle protein 2 zf-FPG_IleRS PF06827.14 gi|433593427|ref|YP_007296168.1| - 0.3 11.0 4.4 11 6.0 0.2 3.2 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS JIP_LZII PF16471.5 gi|433593427|ref|YP_007296168.1| - 0.4 10.9 8.7 1.1 9.5 8.7 1.7 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II NYD-SP28_assoc PF14775.6 gi|433593427|ref|YP_007296168.1| - 0.48 10.6 5.4 2 8.6 5.4 2.1 1 0 0 1 1 1 0 Sperm tail C-terminal domain TolA_bind_tri PF16331.5 gi|433593427|ref|YP_007296168.1| - 0.91 9.7 11.4 0.84 9.8 9.0 2.1 2 0 0 2 2 2 0 TolA binding protein trimerisation AAA_13 PF13166.6 gi|433593427|ref|YP_007296168.1| - 1 8.0 2.4 1.5 7.4 2.4 1.2 1 0 0 1 1 1 0 AAA domain TMF_TATA_bd PF12325.8 gi|433593427|ref|YP_007296168.1| - 1.1 9.5 13.3 0.28 11.4 9.7 1.8 2 0 0 2 2 1 0 TATA element modulatory factor 1 TATA binding TSC22 PF01166.18 gi|433593427|ref|YP_007296168.1| - 1.1 9.6 8.3 3.5 8.0 5.3 3.0 2 1 1 3 3 2 0 TSC-22/dip/bun family Spc7 PF08317.11 gi|433593427|ref|YP_007296168.1| - 1.6 7.5 7.5 0.38 9.6 2.2 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF4407 PF14362.6 gi|433593427|ref|YP_007296168.1| - 1.8 7.8 4.7 0.44 9.9 0.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) ATG16 PF08614.11 gi|433593427|ref|YP_007296168.1| - 3.5 7.8 14.1 0.044 14.0 5.5 2.1 3 0 0 3 3 2 0 Autophagy protein 16 (ATG16) betaPIX_CC PF16523.5 gi|433593427|ref|YP_007296168.1| - 3.9 7.4 8.9 3.4 7.6 3.9 2.3 2 0 0 2 2 2 0 betaPIX coiled coil ZapB PF06005.12 gi|433593427|ref|YP_007296168.1| - 4.4 7.8 13.3 2 8.9 9.0 2.4 2 0 0 2 2 2 0 Cell division protein ZapB PKcGMP_CC PF16808.5 gi|433593427|ref|YP_007296168.1| - 8 6.4 14.7 0.79 9.6 4.4 2.8 1 1 1 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase MacB_PCD PF12704.7 gi|433593429|ref|YP_007296170.1| - 6.2e-20 72.4 4.3 6.2e-20 72.4 4.3 2.4 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|433593429|ref|YP_007296170.1| - 0.0004 20.8 5.8 0.0004 20.8 5.8 3.2 3 0 0 3 3 3 1 FtsX-like permease family RskA PF10099.9 gi|433593429|ref|YP_007296170.1| - 0.21 11.8 3.1 0.76 10.0 0.5 2.4 2 0 0 2 2 2 0 Anti-sigma-K factor rskA FtsX PF02687.21 gi|433593430|ref|YP_007296171.1| - 2.9e-05 24.4 12.7 0.0077 16.7 7.7 3.2 3 0 0 3 3 3 2 FtsX-like permease family ABC_tran PF00005.27 gi|433593431|ref|YP_007296172.1| - 3.1e-35 121.7 0.0 4.2e-35 121.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|433593431|ref|YP_007296172.1| - 1.2e-06 28.6 0.6 0.015 15.1 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|433593431|ref|YP_007296172.1| - 1.3e-05 24.8 0.1 0.0016 17.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|433593431|ref|YP_007296172.1| - 0.00042 20.0 0.1 0.00084 19.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|433593431|ref|YP_007296172.1| - 0.0014 19.0 1.4 0.0025 18.2 1.4 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|433593431|ref|YP_007296172.1| - 0.0024 17.8 0.1 0.0039 17.1 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 gi|433593431|ref|YP_007296172.1| - 0.013 16.0 0.4 0.043 14.4 0.4 2.0 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|433593431|ref|YP_007296172.1| - 0.027 14.2 0.0 0.73 9.5 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Rad17 PF03215.15 gi|433593431|ref|YP_007296172.1| - 0.036 14.0 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|433593431|ref|YP_007296172.1| - 0.044 14.0 0.8 0.083 13.1 0.2 1.8 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|433593431|ref|YP_007296172.1| - 0.044 13.5 1.0 0.19 11.4 1.0 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|433593431|ref|YP_007296172.1| - 0.047 13.3 0.0 0.62 9.7 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 gi|433593431|ref|YP_007296172.1| - 0.14 12.5 0.1 2.8 8.3 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|433593431|ref|YP_007296172.1| - 0.18 12.3 0.1 0.32 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|433593431|ref|YP_007296172.1| - 0.27 10.0 0.0 0.38 9.5 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein PKD PF00801.20 gi|433593433|ref|YP_007296174.1| - 1e-08 34.9 0.5 1e-08 34.9 0.5 2.8 3 0 0 3 3 3 1 PKD domain Ig_3 PF13927.6 gi|433593433|ref|YP_007296174.1| - 0.00011 22.7 5.1 0.21 12.2 0.1 3.6 3 0 0 3 3 3 2 Immunoglobulin domain PGF-CTERM PF18204.1 gi|433593433|ref|YP_007296174.1| - 0.00095 19.1 2.7 0.00095 19.1 2.7 1.7 2 0 0 2 2 2 1 PGF-CTERM motif ChitinaseA_N PF08329.10 gi|433593433|ref|YP_007296174.1| - 0.0073 16.0 0.5 0.19 11.4 0.2 2.7 2 0 0 2 2 2 1 Chitinase A, N-terminal domain Ig_2 PF13895.6 gi|433593433|ref|YP_007296174.1| - 0.013 15.8 0.6 0.066 13.6 0.1 2.5 3 0 0 3 3 3 0 Immunoglobulin domain CENP-B_dimeris PF09026.10 gi|433593433|ref|YP_007296174.1| - 0.021 15.2 0.0 0.021 15.2 0.0 2.9 3 0 0 3 3 3 0 Centromere protein B dimerisation domain PKD_3 PF16820.5 gi|433593433|ref|YP_007296174.1| - 0.071 12.9 1.7 0.23 11.2 0.5 2.3 2 0 0 2 2 2 0 PKD-like domain DUF11 PF01345.18 gi|433593433|ref|YP_007296174.1| - 0.47 10.8 11.5 4.4 7.7 0.1 4.2 4 1 0 4 4 4 0 Domain of unknown function DUF11 DUF58 PF01882.18 gi|433593434|ref|YP_007296175.1| - 3.8e-22 78.4 1.8 6.5e-22 77.6 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function DUF58 CAP_N PF01213.19 gi|433593434|ref|YP_007296175.1| - 0.24 10.8 0.1 0.38 10.2 0.1 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal BaxI_1 PF12811.7 gi|433593435|ref|YP_007296176.1| - 0.22 11.1 9.5 0.16 11.5 8.0 1.5 1 1 0 1 1 1 0 Bax inhibitor 1 like PhoR PF11808.8 gi|433593435|ref|YP_007296176.1| - 1.2 9.6 11.0 0.21 12.0 0.4 2.6 2 1 1 3 3 3 0 Phosphate regulon sensor protein PhoR Tmemb_14 PF03647.13 gi|433593435|ref|YP_007296176.1| - 4 8.3 14.6 0.27 12.0 2.3 2.5 1 1 1 2 2 2 0 Transmembrane proteins 14C ApoO PF09769.9 gi|433593436|ref|YP_007296177.1| - 0.00012 22.0 0.4 0.00025 21.0 0.4 1.5 1 1 0 1 1 1 1 Apolipoprotein O DUF2157 PF09925.9 gi|433593436|ref|YP_007296177.1| - 2 8.2 4.8 7.6 6.3 4.8 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) zf-dskA_traR PF01258.17 gi|433593440|ref|YP_007296181.1| - 0.0022 17.9 0.9 0.0031 17.4 0.9 1.3 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger DUF2387 PF09526.10 gi|433593440|ref|YP_007296181.1| - 0.093 12.9 0.5 0.15 12.2 0.5 1.5 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) TFIIS_C PF01096.18 gi|433593440|ref|YP_007296181.1| - 0.11 12.4 0.1 0.11 12.4 0.1 1.8 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) GBS_Bsp-like PF08481.10 gi|433593441|ref|YP_007296182.1| - 0.00073 19.6 0.7 0.0045 17.1 0.0 2.2 2 0 0 2 2 2 1 GBS Bsp-like repeat Flavi_NS2B PF01002.19 gi|433593441|ref|YP_007296182.1| - 0.96 9.3 2.9 5.3 6.9 0.7 2.3 2 0 0 2 2 2 0 Flavivirus non-structural protein NS2B DUF922 PF06037.11 gi|433593444|ref|YP_007296185.1| - 0.098 12.4 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF922) DDE_Tnp_1 PF01609.21 gi|433593445|ref|YP_007296186.1| - 3.2e-10 40.0 3.3 4.9e-10 39.4 3.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593445|ref|YP_007296186.1| - 0.17 11.9 0.5 0.48 10.5 0.3 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) HATPase_c_3 PF13589.6 gi|433593446|ref|YP_007296187.1| - 5.4e-06 26.3 0.1 8.8e-06 25.6 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TrmB PF01978.19 gi|433593447|ref|YP_007296188.1| - 6.2e-08 32.4 0.0 1.1e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|433593447|ref|YP_007296188.1| - 0.00023 20.6 0.0 0.00055 19.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Cdc6_C PF09079.11 gi|433593447|ref|YP_007296188.1| - 0.002 18.1 0.0 0.0034 17.3 0.0 1.4 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain HTH_20 PF12840.7 gi|433593447|ref|YP_007296188.1| - 0.0071 16.4 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433593447|ref|YP_007296188.1| - 0.0086 16.0 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|433593447|ref|YP_007296188.1| - 0.012 16.1 0.0 0.024 15.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|433593447|ref|YP_007296188.1| - 0.019 15.3 0.0 0.029 14.7 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.12 gi|433593447|ref|YP_007296188.1| - 0.02 14.9 0.0 0.037 14.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|433593447|ref|YP_007296188.1| - 0.022 15.1 0.0 0.27 11.6 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator HTH_IclR PF09339.10 gi|433593447|ref|YP_007296188.1| - 0.024 14.4 0.0 0.09 12.6 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain FaeA PF04703.12 gi|433593447|ref|YP_007296188.1| - 0.025 14.9 0.0 0.053 13.9 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein DUF4423 PF14394.6 gi|433593447|ref|YP_007296188.1| - 0.025 14.3 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_29 PF13551.6 gi|433593447|ref|YP_007296188.1| - 0.096 12.7 0.1 0.48 10.5 0.0 2.2 2 1 1 3 3 3 0 Winged helix-turn helix HTH_43 PF09904.9 gi|433593447|ref|YP_007296188.1| - 0.1 12.6 0.1 0.28 11.2 0.0 1.7 1 1 1 2 2 2 0 Winged helix-turn helix E2F_TDP PF02319.20 gi|433593447|ref|YP_007296188.1| - 0.1 12.7 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain PIN_12 PF16289.5 gi|433593448|ref|YP_007296189.1| - 0.032 14.7 0.0 0.062 13.8 0.0 1.6 1 1 0 1 1 1 0 PIN domain DDE_Tnp_1 PF01609.21 gi|433593449|ref|YP_007296190.1| - 5.1e-20 72.0 0.0 7e-20 71.6 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593449|ref|YP_007296190.1| - 0.0008 19.4 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) HalOD1 PF18545.1 gi|433593450|ref|YP_007296191.1| - 3.4e-07 30.4 0.1 3.4e-07 30.4 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 UBA PF00627.31 gi|433593450|ref|YP_007296191.1| - 0.12 12.3 0.4 2.3 8.2 0.1 2.1 2 0 0 2 2 2 0 UBA/TS-N domain Peptidase_M78 PF06114.13 gi|433593451|ref|YP_007296192.1| - 0.001 19.0 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain SprT-like PF10263.9 gi|433593451|ref|YP_007296192.1| - 0.055 13.3 0.0 0.3 11.0 0.0 2.0 2 0 0 2 2 2 0 SprT-like family TetR_C_15 PF17918.1 gi|433593451|ref|YP_007296192.1| - 0.1 13.4 0.8 1.1 10.1 0.1 2.4 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain HTH_7 PF02796.15 gi|433593453|ref|YP_007296194.1| - 9.7e-07 28.8 0.0 2.1e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase TrmB PF01978.19 gi|433593453|ref|YP_007296194.1| - 0.00011 22.0 0.0 0.00026 20.8 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|433593453|ref|YP_007296194.1| - 0.00041 20.2 0.2 0.0011 18.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|433593453|ref|YP_007296194.1| - 0.00063 19.6 0.5 0.0039 17.1 0.0 2.4 3 0 0 3 3 3 1 HTH domain GntR PF00392.21 gi|433593453|ref|YP_007296194.1| - 0.00075 19.1 0.6 0.0044 16.6 0.1 2.3 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|433593453|ref|YP_007296194.1| - 0.0013 18.6 0.2 0.0084 16.1 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|433593453|ref|YP_007296194.1| - 0.006 16.6 0.1 0.02 14.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|433593453|ref|YP_007296194.1| - 0.016 15.0 0.0 0.038 13.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HEPN-like_int PF18867.1 gi|433593453|ref|YP_007296194.1| - 0.045 13.6 0.4 0.068 13.0 0.4 1.2 1 0 0 1 1 1 0 HEPN-like integron domain Rrf2 PF02082.20 gi|433593453|ref|YP_007296194.1| - 0.052 13.9 0.0 0.56 10.6 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator UPF0122 PF04297.14 gi|433593453|ref|YP_007296194.1| - 0.064 13.5 1.6 0.72 10.1 0.6 2.7 1 1 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_IclR PF09339.10 gi|433593453|ref|YP_007296194.1| - 0.067 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain WXG100 PF06013.12 gi|433593453|ref|YP_007296194.1| - 0.07 13.4 2.9 0.39 11.0 0.7 2.3 2 1 0 2 2 2 0 Proteins of 100 residues with WXG TryThrA_C PF12319.8 gi|433593453|ref|YP_007296194.1| - 0.082 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Tryptophan-Threonine-rich plasmodium antigen C terminal Histone_HNS PF00816.21 gi|433593453|ref|YP_007296194.1| - 0.085 13.7 1.7 0.19 12.6 1.7 1.7 1 0 0 1 1 1 0 H-NS histone family Fe_dep_repress PF01325.19 gi|433593453|ref|YP_007296194.1| - 0.12 12.6 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Mobilization_B PF17511.2 gi|433593453|ref|YP_007296194.1| - 0.12 12.8 0.7 0.19 12.1 0.2 1.5 2 0 0 2 2 2 0 Mobilization protein B TetR_N PF00440.23 gi|433593453|ref|YP_007296194.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HalX PF08663.10 gi|433593453|ref|YP_007296194.1| - 1.9 8.9 13.4 1.9 8.9 0.7 2.6 2 1 0 2 2 2 0 HalX domain Noc2 PF03715.13 gi|433593454|ref|YP_007296195.1| - 0.1 11.8 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Noc2p family TBP PF00352.21 gi|433593455|ref|YP_007296196.1| - 8.7e-53 176.2 0.0 1.2e-25 89.3 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|433593455|ref|YP_007296196.1| - 1.6e-06 28.1 0.0 0.01 15.9 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) T4bSS_IcmS PF12608.8 gi|433593455|ref|YP_007296196.1| - 0.005 17.1 0.0 0.76 10.1 0.0 2.2 2 0 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment A2L_zn_ribbon PF08792.10 gi|433593456|ref|YP_007296197.1| - 0.0049 16.5 1.9 0.0064 16.2 1.9 1.2 1 0 0 1 1 1 1 A2L zinc ribbon domain Sgf11 PF08209.11 gi|433593456|ref|YP_007296197.1| - 0.0079 15.7 3.8 0.055 13.0 0.2 2.2 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) Zn_Tnp_IS91 PF14319.6 gi|433593456|ref|YP_007296197.1| - 0.0083 16.1 3.6 0.0084 16.1 3.6 1.0 1 0 0 1 1 1 1 Transposase zinc-binding domain DZR PF12773.7 gi|433593456|ref|YP_007296197.1| - 0.0089 16.0 1.1 0.0098 15.9 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|433593456|ref|YP_007296197.1| - 0.017 15.1 1.1 0.017 15.1 1.1 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 gi|433593456|ref|YP_007296197.1| - 0.037 14.1 2.9 1.7 8.8 0.3 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc-ribbon_6 PF10005.9 gi|433593456|ref|YP_007296197.1| - 0.045 14.4 1.6 0.047 14.4 1.6 1.1 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|433593456|ref|YP_007296197.1| - 0.066 13.0 4.6 0.22 11.3 4.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Vps36-NZF-N PF16988.5 gi|433593456|ref|YP_007296197.1| - 0.066 12.6 0.9 2.3 7.7 0.0 2.0 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain TF_Zn_Ribbon PF08271.12 gi|433593456|ref|YP_007296197.1| - 0.082 12.4 3.5 0.16 11.5 3.5 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C2H2_11 PF16622.5 gi|433593456|ref|YP_007296197.1| - 0.14 11.9 4.2 1.2 8.9 0.2 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type DUF1451 PF07295.11 gi|433593456|ref|YP_007296197.1| - 0.16 12.0 2.8 0.16 12.0 2.8 1.0 1 0 0 1 1 1 0 Zinc-ribbon containing domain Ribosomal_L37e PF01907.19 gi|433593456|ref|YP_007296197.1| - 0.19 11.9 7.3 0.29 11.3 7.3 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e Zn-ribbon_8 PF09723.10 gi|433593456|ref|YP_007296197.1| - 0.2 11.8 3.9 0.51 10.5 3.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DUF2800 PF10926.8 gi|433593457|ref|YP_007296198.1| - 0.002 17.4 0.0 0.0035 16.7 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2800) DivIC PF04977.15 gi|433593457|ref|YP_007296198.1| - 0.026 14.3 0.4 0.12 12.2 0.3 2.1 2 0 0 2 2 2 0 Septum formation initiator ABC_tran_CTD PF16326.5 gi|433593457|ref|YP_007296198.1| - 0.028 14.7 1.6 0.083 13.2 1.6 1.8 1 0 0 1 1 1 0 ABC transporter C-terminal domain DUF2383 PF09537.10 gi|433593457|ref|YP_007296198.1| - 0.028 14.7 1.6 0.065 13.6 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) DDE_Tnp_IS1595 PF12762.7 gi|433593459|ref|YP_007296200.1| - 2.5e-21 76.3 0.0 4.1e-21 75.6 0.0 1.4 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|433593459|ref|YP_007296200.1| - 3.2e-10 39.8 0.9 6.4e-10 38.8 0.9 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|433593459|ref|YP_007296200.1| - 6.1e-05 22.7 4.6 0.00014 21.5 4.6 1.6 1 0 0 1 1 1 1 InsA N-terminal domain DUF2089 PF09862.9 gi|433593459|ref|YP_007296200.1| - 0.0098 15.9 0.1 0.017 15.2 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2089) Zn-ribbon_8 PF09723.10 gi|433593459|ref|YP_007296200.1| - 0.041 14.0 0.7 11 6.3 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|433593459|ref|YP_007296200.1| - 0.19 11.5 2.4 0.39 10.6 2.4 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf-Dof PF02701.15 gi|433593459|ref|YP_007296200.1| - 0.21 11.8 5.4 0.46 10.7 5.4 1.6 1 1 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.6 gi|433593459|ref|YP_007296200.1| - 0.68 10.7 8.6 1.2 9.9 1.0 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 bPH_2 PF03703.14 gi|433593460|ref|YP_007296201.1| - 5.7e-11 42.5 0.0 9.4e-11 41.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain PQQ_2 PF13360.6 gi|433593462|ref|YP_007296203.1| - 2.3e-43 148.5 11.0 1.7e-28 99.8 5.3 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|433593462|ref|YP_007296203.1| - 2.1e-19 69.4 23.3 0.00023 21.5 0.2 8.5 9 0 0 9 9 9 5 PQQ-like domain PQQ PF01011.21 gi|433593462|ref|YP_007296203.1| - 3.3e-16 58.3 9.1 0.011 15.7 0.0 6.4 7 0 0 7 7 7 4 PQQ enzyme repeat DDE_Tnp_1 PF01609.21 gi|433593464|ref|YP_007296205.1| - 3.2e-22 79.3 0.0 8.6e-22 77.8 0.0 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593464|ref|YP_007296205.1| - 8.4e-07 28.9 0.0 2.3e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_4 PF13359.6 gi|433593464|ref|YP_007296205.1| - 0.00016 21.4 0.0 0.61 9.7 0.0 2.3 2 0 0 2 2 2 2 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.6 gi|433593464|ref|YP_007296205.1| - 0.0013 18.8 0.0 0.0052 16.8 0.0 1.9 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|433593464|ref|YP_007296205.1| - 0.0024 18.1 0.2 0.0051 17.0 0.2 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_assoc PF13808.6 gi|433593464|ref|YP_007296205.1| - 0.13 12.3 0.2 2 8.5 0.0 2.9 2 1 1 3 3 3 0 DDE_Tnp_1-associated GPDPase_memb PF10110.9 gi|433593465|ref|YP_007296206.1| - 5.8e-07 28.6 1.6 7.2e-07 28.3 1.6 1.1 1 0 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase Dr_adhesin PF12393.8 gi|433593465|ref|YP_007296206.1| - 0.096 13.0 0.7 0.33 11.3 0.7 1.9 1 0 0 1 1 1 0 Dr family adhesin RHH_1 PF01402.21 gi|433593468|ref|YP_007296209.1| - 0.0056 16.6 1.4 0.011 15.7 1.4 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IF2_N PF04760.15 gi|433593468|ref|YP_007296209.1| - 0.012 15.4 0.1 0.099 12.5 0.0 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region zf-C2HE PF16278.5 gi|433593470|ref|YP_007296211.1| - 0.021 15.3 0.0 0.12 12.8 0.0 2.2 2 0 0 2 2 2 0 C2HE / C2H2 / C2HC zinc-binding finger zf-Mss51 PF13824.6 gi|433593470|ref|YP_007296211.1| - 0.063 13.4 8.6 8.7 6.5 0.1 3.6 2 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 RNA_POL_M_15KD PF02150.16 gi|433593470|ref|YP_007296211.1| - 0.076 12.9 3.3 2.3 8.2 0.2 3.3 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-BED PF02892.15 gi|433593470|ref|YP_007296211.1| - 0.39 10.8 2.4 3 7.9 0.1 2.9 3 0 0 3 3 3 0 BED zinc finger zinc_ribbon_2 PF13240.6 gi|433593470|ref|YP_007296211.1| - 0.99 9.2 13.4 0.11 12.2 2.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|433593470|ref|YP_007296211.1| - 1.4 9.7 8.5 6.9 7.5 0.6 2.7 2 1 0 2 2 2 0 zinc-ribbon family C1_1 PF00130.22 gi|433593470|ref|YP_007296211.1| - 1.8 8.5 6.5 12 5.9 1.4 2.7 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_2 PF03107.16 gi|433593470|ref|YP_007296211.1| - 4.1 7.8 7.8 37 4.8 0.1 3.3 2 1 1 3 3 3 0 C1 domain DZR PF12773.7 gi|433593470|ref|YP_007296211.1| - 5.6 7.1 11.4 1.5 8.9 1.2 3.0 2 1 0 2 2 2 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.12 gi|433593471|ref|YP_007296212.1| - 0.021 14.8 3.0 0.56 10.2 0.3 2.1 1 1 1 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|433593471|ref|YP_007296212.1| - 0.046 13.8 1.4 0.12 12.5 1.2 1.7 1 1 0 1 1 1 0 Zinc ribbon domain DDE_Tnp_1 PF01609.21 gi|433593472|ref|YP_007296213.1| - 1.1e-21 77.4 0.0 1.7e-21 76.9 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain tRNA_anti-codon PF01336.25 gi|433593473|ref|YP_007296214.1| - 0.0019 18.1 0.0 0.0037 17.2 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain zf-C2H2_12 PF18658.1 gi|433593475|ref|YP_007296216.1| - 0.011 15.3 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger C2H2-type PadR PF03551.14 gi|433593476|ref|YP_007296217.1| - 6.4e-13 48.5 0.1 7.4e-13 48.3 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|433593476|ref|YP_007296217.1| - 0.0062 16.5 0.1 0.0078 16.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4358 PF14270.6 gi|433593476|ref|YP_007296217.1| - 0.023 15.0 0.0 0.037 14.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) HTH_27 PF13463.6 gi|433593476|ref|YP_007296217.1| - 0.14 12.7 0.0 0.17 12.4 0.0 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain DDE_Tnp_IS66 PF03050.14 gi|433593478|ref|YP_007296219.1| - 2.7e-49 168.2 0.1 2.7e-49 168.2 0.1 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.12 gi|433593478|ref|YP_007296219.1| - 7.4e-09 36.1 7.8 2e-08 34.7 7.8 1.8 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.7 gi|433593478|ref|YP_007296219.1| - 9e-06 26.0 5.0 9e-06 26.0 5.0 2.7 3 0 0 3 3 1 1 zinc-finger binding domain of transposase IS66 MscS_porin PF12795.7 gi|433593478|ref|YP_007296219.1| - 9.7e-06 25.3 6.6 1.7e-05 24.5 6.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.16 gi|433593478|ref|YP_007296219.1| - 0.00055 20.4 7.2 0.0011 19.4 7.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF16 UPF0242 PF06785.11 gi|433593478|ref|YP_007296219.1| - 0.0015 18.7 13.2 0.0025 17.9 13.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus HSBP1 PF06825.12 gi|433593478|ref|YP_007296219.1| - 0.0024 17.7 6.2 0.016 15.0 0.8 2.6 1 1 0 2 2 2 1 Heat shock factor binding protein 1 SKA1 PF07160.12 gi|433593478|ref|YP_007296219.1| - 0.0035 17.2 1.0 0.0057 16.5 1.0 1.3 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 1 Herpes_UL14 PF03580.14 gi|433593478|ref|YP_007296219.1| - 0.0048 17.2 1.4 0.0088 16.3 1.4 1.4 1 0 0 1 1 1 1 Herpesvirus UL14-like protein Atg14 PF10186.9 gi|433593478|ref|YP_007296219.1| - 0.018 14.2 7.6 0.028 13.5 7.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DDE_Tnp_IS240 PF13610.6 gi|433593478|ref|YP_007296219.1| - 0.019 15.2 2.0 0.087 13.1 0.0 2.4 2 1 0 2 2 2 0 DDE domain YkyA PF10368.9 gi|433593478|ref|YP_007296219.1| - 0.021 14.5 9.5 0.035 13.8 9.5 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein HemX PF04375.14 gi|433593478|ref|YP_007296219.1| - 0.024 13.9 4.1 0.038 13.3 4.1 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase PKcGMP_CC PF16808.5 gi|433593478|ref|YP_007296219.1| - 0.026 14.4 26.3 0.13 12.1 6.8 2.6 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Fmp27_WPPW PF10359.9 gi|433593478|ref|YP_007296219.1| - 0.031 13.1 5.6 0.049 12.5 5.6 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Exonuc_VII_L PF02601.15 gi|433593478|ref|YP_007296219.1| - 0.036 13.6 3.6 0.064 12.8 3.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit ATG16 PF08614.11 gi|433593478|ref|YP_007296219.1| - 0.051 13.8 10.6 0.1 12.8 10.6 1.5 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|433593478|ref|YP_007296219.1| - 0.061 12.0 8.2 0.088 11.4 8.2 1.1 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|433593478|ref|YP_007296219.1| - 0.099 12.7 2.7 0.25 11.4 2.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon GAS PF13851.6 gi|433593478|ref|YP_007296219.1| - 0.11 11.9 9.7 0.2 11.0 9.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cortex-I_coil PF09304.10 gi|433593478|ref|YP_007296219.1| - 0.11 12.7 10.5 0.23 11.7 10.5 1.5 1 0 0 1 1 1 0 Cortexillin I, coiled coil Phage_GPO PF05929.11 gi|433593478|ref|YP_007296219.1| - 0.11 12.1 3.1 0.18 11.4 3.1 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF3552 PF12072.8 gi|433593478|ref|YP_007296219.1| - 0.11 11.9 15.6 0.2 11.1 15.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Terminase_4 PF05119.12 gi|433593478|ref|YP_007296219.1| - 0.14 12.6 0.7 0.73 10.3 0.2 2.3 2 0 0 2 2 2 0 Phage terminase, small subunit DUF1664 PF07889.12 gi|433593478|ref|YP_007296219.1| - 0.15 12.1 5.3 0.3 11.1 5.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|433593478|ref|YP_007296219.1| - 0.15 10.9 11.6 0.17 10.7 10.5 1.6 2 0 0 2 2 1 0 Spc7 kinetochore protein FliD_C PF07195.12 gi|433593478|ref|YP_007296219.1| - 0.17 11.3 3.8 0.26 10.7 3.8 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TMF_DNA_bd PF12329.8 gi|433593478|ref|YP_007296219.1| - 0.17 11.9 12.6 0.34 10.9 12.6 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.10 gi|433593478|ref|YP_007296219.1| - 0.18 12.0 5.5 0.39 10.9 5.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family CSN5_C PF18323.1 gi|433593478|ref|YP_007296219.1| - 0.19 12.7 0.7 5.4 8.0 0.8 2.6 2 0 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain FAM76 PF16046.5 gi|433593478|ref|YP_007296219.1| - 0.23 10.8 4.0 0.37 10.1 4.0 1.3 1 0 0 1 1 1 0 FAM76 protein WASH_WAHD PF11945.8 gi|433593478|ref|YP_007296219.1| - 0.27 10.7 7.2 0.39 10.2 7.2 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex DUF724 PF05266.14 gi|433593478|ref|YP_007296219.1| - 0.27 11.0 6.4 0.46 10.3 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Allexi_40kDa PF05549.11 gi|433593478|ref|YP_007296219.1| - 0.32 10.5 2.8 0.55 9.7 2.8 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3584 PF12128.8 gi|433593478|ref|YP_007296219.1| - 0.36 8.3 7.2 0.51 7.8 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TMPIT PF07851.13 gi|433593478|ref|YP_007296219.1| - 0.36 10.0 4.1 0.57 9.4 4.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein Flagellin_C PF00700.21 gi|433593478|ref|YP_007296219.1| - 0.39 11.1 1.2 0.79 10.1 1.2 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region ACCA PF03255.14 gi|433593478|ref|YP_007296219.1| - 0.5 10.2 5.0 1.3 8.9 5.0 1.7 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1910 PF08928.10 gi|433593478|ref|YP_007296219.1| - 0.66 10.0 3.8 1.7 8.6 3.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1910) LUC7 PF03194.15 gi|433593478|ref|YP_007296219.1| - 0.69 9.5 7.5 1.4 8.5 7.5 1.4 1 0 0 1 1 1 0 LUC7 N_terminus zf-FPG_IleRS PF06827.14 gi|433593478|ref|YP_007296219.1| - 0.81 9.6 4.3 8.7 6.3 0.2 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS ExsD PF16806.5 gi|433593478|ref|YP_007296219.1| - 1 9.3 5.1 14 5.6 4.3 2.1 2 0 0 2 2 2 0 Antiactivator protein ExsD DUF4407 PF14362.6 gi|433593478|ref|YP_007296219.1| - 1 8.7 3.5 1.7 7.9 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RmuC PF02646.16 gi|433593478|ref|YP_007296219.1| - 1.1 8.4 7.0 1.7 7.7 7.0 1.2 1 0 0 1 1 1 0 RmuC family FemAB PF02388.16 gi|433593478|ref|YP_007296219.1| - 1.1 8.0 6.1 1.7 7.4 6.1 1.1 1 0 0 1 1 1 0 FemAB family Fzo_mitofusin PF04799.13 gi|433593478|ref|YP_007296219.1| - 1.4 8.4 6.1 2.5 7.6 6.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region Zn-ribbon_8 PF09723.10 gi|433593478|ref|YP_007296219.1| - 1.6 8.9 5.5 14 5.9 0.8 2.7 2 0 0 2 2 2 0 Zinc ribbon domain DUF1465 PF07323.12 gi|433593478|ref|YP_007296219.1| - 1.8 8.4 6.9 1.4 8.7 3.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1465) DUF3450 PF11932.8 gi|433593478|ref|YP_007296219.1| - 2.1 7.6 15.5 1.5 8.1 10.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) DUF2203 PF09969.9 gi|433593478|ref|YP_007296219.1| - 2.1 9.1 8.1 5.8 7.7 6.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 gi|433593478|ref|YP_007296219.1| - 2.3 6.1 4.9 3.2 5.6 4.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MPS2 PF17060.5 gi|433593478|ref|YP_007296219.1| - 2.4 7.4 6.1 3.7 6.7 6.1 1.2 1 0 0 1 1 1 0 Monopolar spindle protein 2 Kre28 PF17097.5 gi|433593478|ref|YP_007296219.1| - 4 6.3 12.8 0.37 9.7 8.3 1.4 2 0 0 2 2 1 0 Spindle pole body component ABC_tran_CTD PF16326.5 gi|433593478|ref|YP_007296219.1| - 6.3 7.1 22.3 1 9.7 16.9 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain DLP_helical PF18709.1 gi|433593478|ref|YP_007296219.1| - 6.7 5.8 8.2 12 5.0 8.2 1.3 1 0 0 1 1 1 0 Dynamin-like helical domain PadR PF03551.14 gi|433593479|ref|YP_007296220.1| - 5.6e-12 45.4 1.0 8.7e-12 44.8 1.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|433593481|ref|YP_007296222.1| - 1.4e-05 24.9 0.0 3.1e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FANCI_S1-cap PF14674.6 gi|433593481|ref|YP_007296222.1| - 0.027 14.6 0.0 0.05 13.7 0.0 1.3 1 0 0 1 1 1 0 FANCI solenoid 1 cap HTH_20 PF12840.7 gi|433593481|ref|YP_007296222.1| - 0.082 13.0 0.0 0.22 11.6 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_Gp19 PF09355.10 gi|433593482|ref|YP_007296223.1| - 0.016 15.7 0.0 0.017 15.5 0.0 1.0 1 0 0 1 1 1 0 Phage protein Gp19/Gp15/Gp42 LTD PF00932.19 gi|433593483|ref|YP_007296224.1| - 3.9e-17 62.6 0.2 1.2e-16 61.1 0.1 1.9 2 0 0 2 2 2 1 Lamin Tail Domain Lactamase_B PF00753.27 gi|433593483|ref|YP_007296224.1| - 3.7e-13 49.9 6.7 1.6e-12 47.9 6.7 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|433593483|ref|YP_007296224.1| - 0.00046 19.7 0.0 0.0008 18.9 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|433593483|ref|YP_007296224.1| - 0.0018 17.8 0.0 0.0029 17.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF3006 PF11213.8 gi|433593484|ref|YP_007296225.1| - 1.6e-18 66.7 2.3 1.9e-18 66.4 2.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) NdhS PF11623.8 gi|433593484|ref|YP_007296225.1| - 0.021 14.5 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H dehydrogenase subunit S DUF1863 PF08937.11 gi|433593485|ref|YP_007296226.1| - 4e-27 95.1 2.0 4.1e-27 95.1 1.2 1.4 2 0 0 2 2 2 1 MTH538 TIR-like domain (DUF1863) TIR_2 PF13676.6 gi|433593485|ref|YP_007296226.1| - 0.0016 19.1 0.0 0.0022 18.6 0.0 1.3 1 0 0 1 1 1 1 TIR domain DUF99 PF01949.16 gi|433593485|ref|YP_007296226.1| - 0.13 11.7 0.1 0.18 11.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF99 HIT PF01230.23 gi|433593487|ref|YP_007296228.1| - 3.1e-23 82.3 0.0 3.8e-23 82.1 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|433593487|ref|YP_007296228.1| - 1.9e-11 44.4 0.0 2.8e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|433593487|ref|YP_007296228.1| - 0.00019 21.3 0.0 0.00025 20.9 0.0 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF1863 PF08937.11 gi|433593488|ref|YP_007296229.1| - 2.9e-30 105.2 0.8 2e-29 102.5 0.2 2.1 2 0 0 2 2 2 1 MTH538 TIR-like domain (DUF1863) Dimeth_Pyl PF09505.10 gi|433593488|ref|YP_007296229.1| - 0.025 13.1 0.1 0.044 12.3 0.1 1.3 1 0 0 1 1 1 0 Dimethylamine methyltransferase (Dimeth_PyL) SCAB-ABD PF16711.5 gi|433593488|ref|YP_007296229.1| - 0.037 13.9 0.1 0.074 13.0 0.1 1.4 1 0 0 1 1 1 0 Actin-binding domain of plant-specific actin-binding protein FlxA PF14282.6 gi|433593489|ref|YP_007296230.1| - 0.00072 19.5 1.0 0.0019 18.2 1.0 1.6 1 0 0 1 1 1 1 FlxA-like protein UPF0242 PF06785.11 gi|433593489|ref|YP_007296230.1| - 0.0021 18.2 0.6 0.0036 17.4 0.6 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus SlyX PF04102.12 gi|433593489|ref|YP_007296230.1| - 0.0059 17.2 8.0 0.85 10.3 4.5 3.5 3 1 0 3 3 3 1 SlyX DUF641 PF04859.12 gi|433593489|ref|YP_007296230.1| - 0.016 15.5 2.0 0.041 14.2 2.0 1.7 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) ZapB PF06005.12 gi|433593489|ref|YP_007296230.1| - 0.068 13.6 3.2 0.23 11.9 3.2 1.9 1 0 0 1 1 1 0 Cell division protein ZapB HSBP1 PF06825.12 gi|433593489|ref|YP_007296230.1| - 0.1 12.5 1.7 5.3 7.0 1.7 2.7 1 1 0 1 1 1 0 Heat shock factor binding protein 1 Atg14 PF10186.9 gi|433593489|ref|YP_007296230.1| - 0.18 10.9 5.0 0.26 10.3 5.0 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1664 PF07889.12 gi|433593489|ref|YP_007296230.1| - 0.2 11.7 0.6 0.43 10.6 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) FAM76 PF16046.5 gi|433593489|ref|YP_007296230.1| - 1.1 8.6 6.7 0.064 12.6 1.5 1.5 2 0 0 2 2 2 0 FAM76 protein ATG16 PF08614.11 gi|433593489|ref|YP_007296230.1| - 1.5 9.0 17.5 0.072 13.3 9.3 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) NYD-SP28 PF14772.6 gi|433593489|ref|YP_007296230.1| - 2.9 8.0 11.5 0.21 11.6 2.4 2.5 2 0 0 2 2 2 0 Sperm tail PKcGMP_CC PF16808.5 gi|433593489|ref|YP_007296230.1| - 5.6 6.9 10.7 5.4 6.9 1.4 2.6 1 1 1 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase TrwB_AAD_bind PF10412.9 gi|433593490|ref|YP_007296231.1| - 3.8e-08 32.7 0.0 6.8e-07 28.5 0.0 2.1 1 1 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|433593490|ref|YP_007296231.1| - 1.1e-05 25.4 0.0 2.8e-05 24.1 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 gi|433593490|ref|YP_007296231.1| - 0.00032 19.6 0.1 0.0071 15.2 0.1 2.1 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer PG_binding_1 PF01471.18 gi|433593490|ref|YP_007296231.1| - 0.0038 17.4 0.2 0.03 14.5 0.0 2.5 3 0 0 3 3 3 1 Putative peptidoglycan binding domain HHH_6 PF14579.6 gi|433593490|ref|YP_007296231.1| - 0.011 16.0 0.0 0.026 14.8 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif FtsK_SpoIIIE PF01580.18 gi|433593490|ref|YP_007296231.1| - 0.038 13.4 0.3 0.77 9.1 0.0 3.0 4 0 0 4 4 4 0 FtsK/SpoIIIE family DUF87 PF01935.17 gi|433593490|ref|YP_007296231.1| - 0.091 12.8 0.3 0.34 11.0 0.0 2.2 2 1 0 2 2 2 0 Helicase HerA, central domain NACHT PF05729.12 gi|433593490|ref|YP_007296231.1| - 0.15 12.0 0.0 0.38 10.7 0.0 1.7 1 0 0 1 1 1 0 NACHT domain Pox_D5 PF03288.16 gi|433593490|ref|YP_007296231.1| - 0.16 12.5 0.0 0.35 11.4 0.0 1.6 1 0 0 1 1 1 0 Poxvirus D5 protein-like Rsa3 PF14615.6 gi|433593491|ref|YP_007296232.1| - 0.025 14.1 0.0 0.067 12.8 0.0 1.7 2 0 0 2 2 2 0 Ribosome-assembly protein 3 DDE_Tnp_1 PF01609.21 gi|433593492|ref|YP_007296233.1| - 4.4e-27 95.1 0.0 6.1e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433593492|ref|YP_007296233.1| - 0.0015 17.9 0.1 0.0022 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|433593492|ref|YP_007296233.1| - 0.11 10.7 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DUF3487 PF11990.8 gi|433593493|ref|YP_007296234.1| - 0.19 11.6 0.6 0.48 10.3 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) ResIII PF04851.15 gi|433593499|ref|YP_007296240.1| - 3.2e-24 85.8 0.0 1.4e-23 83.8 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|433593499|ref|YP_007296240.1| - 2.2e-21 76.2 0.1 3.6e-21 75.5 0.1 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|433593499|ref|YP_007296240.1| - 4e-17 62.6 0.1 1.8e-16 60.5 0.1 2.1 3 0 0 3 3 3 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|433593499|ref|YP_007296240.1| - 7.9e-13 48.1 1.0 7.9e-13 48.1 1.0 2.4 2 0 0 2 2 2 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|433593499|ref|YP_007296240.1| - 2.8e-07 30.5 0.0 9.3e-07 28.8 0.0 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase IstB_IS21 PF01695.17 gi|433593499|ref|YP_007296240.1| - 0.0024 17.6 0.0 0.4 10.4 0.0 3.1 4 0 0 4 4 4 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|433593499|ref|YP_007296240.1| - 0.013 15.7 0.0 0.11 12.8 0.0 2.5 2 1 0 2 2 2 0 AAA domain Helicase_C_2 PF13307.6 gi|433593499|ref|YP_007296240.1| - 0.12 12.6 0.2 3.2 7.9 0.0 2.6 1 1 1 2 2 2 0 Helicase C-terminal domain PhoH PF02562.16 gi|433593499|ref|YP_007296240.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein Calci_bind_CcbP PF11535.8 gi|433593500|ref|YP_007296241.1| - 4e-41 139.8 0.3 4.6e-41 139.6 0.3 1.0 1 0 0 1 1 1 1 Calcium binding DDE_Tnp_1 PF01609.21 gi|433593502|ref|YP_007296243.1| - 2.6e-17 63.2 0.0 4.1e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593502|ref|YP_007296243.1| - 9.2e-05 22.4 0.0 0.00018 21.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|433593506|ref|YP_007296247.1| - 4.4e-27 95.1 0.0 6.1e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|433593506|ref|YP_007296247.1| - 0.0015 17.9 0.1 0.0022 17.3 0.1 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|433593506|ref|YP_007296247.1| - 0.11 10.7 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 PRiA4_ORF3 PF07929.11 gi|433593507|ref|YP_007296248.1| - 1.1e-15 57.8 0.6 5.2e-14 52.3 0.0 2.1 2 0 0 2 2 2 2 Plasmid pRiA4b ORF-3-like protein DUF3499 PF12005.8 gi|433593507|ref|YP_007296248.1| - 0.03 14.9 0.2 0.05 14.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3499) DDE_Tnp_1 PF01609.21 gi|433593508|ref|YP_007296249.1| - 2.6e-17 63.2 0.0 4.1e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593508|ref|YP_007296249.1| - 9.2e-05 22.4 0.0 0.00018 21.5 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_IS66 PF03050.14 gi|433593511|ref|YP_007296252.1| - 2.4e-47 161.7 0.3 2.4e-47 161.7 0.3 1.6 2 0 0 2 2 2 1 Transposase IS66 family Tropomyosin_1 PF12718.7 gi|433593511|ref|YP_007296252.1| - 8.3e-06 26.0 6.5 1.8e-05 24.9 6.5 1.5 1 0 0 1 1 1 1 Tropomyosin like ERM PF00769.19 gi|433593511|ref|YP_007296252.1| - 0.00015 21.7 1.2 0.00028 20.8 0.9 1.6 2 0 0 2 2 1 1 Ezrin/radixin/moesin family DDE_Tnp_IS240 PF13610.6 gi|433593511|ref|YP_007296252.1| - 0.00033 20.9 0.8 0.0019 18.4 0.0 2.3 2 1 0 2 2 2 1 DDE domain SlyX PF04102.12 gi|433593511|ref|YP_007296252.1| - 0.001 19.6 8.4 0.004 17.7 8.4 2.0 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.7 gi|433593511|ref|YP_007296252.1| - 0.0015 18.9 8.7 0.0015 18.9 8.7 2.4 3 0 0 3 3 1 1 zinc-finger binding domain of transposase IS66 Spc7 PF08317.11 gi|433593511|ref|YP_007296252.1| - 0.0026 16.7 4.7 0.0055 15.6 4.7 1.5 1 0 0 1 1 1 1 Spc7 kinetochore protein HOOK PF05622.12 gi|433593511|ref|YP_007296252.1| - 0.0036 15.5 7.2 0.0057 14.9 7.2 1.2 1 0 0 1 1 1 1 HOOK protein Tmemb_cc2 PF10267.9 gi|433593511|ref|YP_007296252.1| - 0.0043 16.3 1.0 0.007 15.6 1.0 1.3 1 0 0 1 1 1 1 Predicted transmembrane and coiled-coil 2 protein Atg14 PF10186.9 gi|433593511|ref|YP_007296252.1| - 0.015 14.4 3.5 0.025 13.7 3.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4472 PF14739.6 gi|433593511|ref|YP_007296252.1| - 0.021 15.6 4.3 0.021 15.6 4.3 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4472) DUF4763 PF15960.5 gi|433593511|ref|YP_007296252.1| - 0.028 13.7 5.2 0.054 12.8 5.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) FmiP_Thoc5 PF09766.9 gi|433593511|ref|YP_007296252.1| - 0.029 13.7 3.4 0.043 13.1 3.4 1.2 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 XLF PF09302.11 gi|433593511|ref|YP_007296252.1| - 0.034 14.3 2.3 0.53 10.4 2.8 2.1 2 0 0 2 2 2 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component Med4 PF10018.9 gi|433593511|ref|YP_007296252.1| - 0.05 13.3 4.6 0.098 12.3 4.6 1.4 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 TMF_DNA_bd PF12329.8 gi|433593511|ref|YP_007296252.1| - 0.071 13.1 13.5 0.13 12.3 13.5 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF3450 PF11932.8 gi|433593511|ref|YP_007296252.1| - 0.075 12.3 8.6 1.4 8.1 7.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) bZIP_1 PF00170.21 gi|433593511|ref|YP_007296252.1| - 0.079 13.1 9.5 0.072 13.2 6.8 2.2 1 1 1 2 2 2 0 bZIP transcription factor DUF3552 PF12072.8 gi|433593511|ref|YP_007296252.1| - 0.084 12.3 9.2 0.16 11.4 9.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DUF641 PF04859.12 gi|433593511|ref|YP_007296252.1| - 0.13 12.6 7.5 0.16 12.3 6.1 1.8 2 0 0 2 2 1 0 Plant protein of unknown function (DUF641) HemX PF04375.14 gi|433593511|ref|YP_007296252.1| - 0.16 11.2 2.9 0.3 10.3 2.9 1.3 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Fmp27_WPPW PF10359.9 gi|433593511|ref|YP_007296252.1| - 0.18 10.6 3.8 0.29 9.9 3.8 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain PspA_IM30 PF04012.12 gi|433593511|ref|YP_007296252.1| - 0.2 11.2 8.8 0.52 9.8 8.8 1.6 1 0 0 1 1 1 0 PspA/IM30 family PKcGMP_CC PF16808.5 gi|433593511|ref|YP_007296252.1| - 0.2 11.5 18.9 0.25 11.2 3.1 2.4 1 1 1 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4407 PF14362.6 gi|433593511|ref|YP_007296252.1| - 0.25 10.7 2.1 0.45 9.8 2.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ATG16 PF08614.11 gi|433593511|ref|YP_007296252.1| - 0.28 11.4 11.4 0.2 11.9 9.1 1.8 2 0 0 2 2 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|433593511|ref|YP_007296252.1| - 0.31 9.7 4.2 0.45 9.1 4.2 1.2 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.12 gi|433593511|ref|YP_007296252.1| - 0.34 11.0 2.4 0.72 9.9 2.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 gi|433593511|ref|YP_007296252.1| - 0.41 11.1 5.6 1 9.8 5.6 1.7 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) RPW8 PF05659.11 gi|433593511|ref|YP_007296252.1| - 0.43 10.3 2.7 0.8 9.4 2.7 1.4 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF812 PF05667.11 gi|433593511|ref|YP_007296252.1| - 0.46 9.3 6.6 0.71 8.7 6.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Spc24 PF08286.11 gi|433593511|ref|YP_007296252.1| - 0.54 10.5 4.5 1.4 9.2 4.5 1.7 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 FemAB PF02388.16 gi|433593511|ref|YP_007296252.1| - 0.61 8.9 4.1 0.89 8.4 4.1 1.1 1 0 0 1 1 1 0 FemAB family DUF4200 PF13863.6 gi|433593511|ref|YP_007296252.1| - 0.66 10.4 14.8 0.061 13.7 10.0 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4200) TMF_TATA_bd PF12325.8 gi|433593511|ref|YP_007296252.1| - 0.73 10.1 11.1 2.3 8.4 11.1 1.8 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding MctB PF11382.8 gi|433593511|ref|YP_007296252.1| - 0.83 9.3 3.3 1.6 8.3 3.3 1.4 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB Csm1_N PF18504.1 gi|433593511|ref|YP_007296252.1| - 1.3 9.4 12.9 0.2 12.0 6.7 2.7 3 0 0 3 3 2 0 Csm1 N-terminal domain TMPIT PF07851.13 gi|433593511|ref|YP_007296252.1| - 1.4 8.0 3.2 2.7 7.2 3.2 1.3 1 0 0 1 1 1 0 TMPIT-like protein GrpE PF01025.19 gi|433593511|ref|YP_007296252.1| - 3.9 7.1 7.7 8.7 6.0 7.7 1.5 1 0 0 1 1 1 0 GrpE ABC_tran_CTD PF16326.5 gi|433593511|ref|YP_007296252.1| - 4.2 7.7 14.0 2 8.7 10.1 2.4 2 0 0 2 2 2 0 ABC transporter C-terminal domain DDE_Tnp_IS66 PF03050.14 gi|433593513|ref|YP_007296254.1| - 2.7e-49 168.2 0.1 2.7e-49 168.2 0.1 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.12 gi|433593513|ref|YP_007296254.1| - 7.4e-09 36.1 7.8 2e-08 34.7 7.8 1.8 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.7 gi|433593513|ref|YP_007296254.1| - 9e-06 26.0 5.0 9e-06 26.0 5.0 2.7 3 0 0 3 3 1 1 zinc-finger binding domain of transposase IS66 MscS_porin PF12795.7 gi|433593513|ref|YP_007296254.1| - 9.7e-06 25.3 6.6 1.7e-05 24.5 6.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.16 gi|433593513|ref|YP_007296254.1| - 0.00055 20.4 7.2 0.0011 19.4 7.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF16 UPF0242 PF06785.11 gi|433593513|ref|YP_007296254.1| - 0.0015 18.7 13.2 0.0025 17.9 13.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus HSBP1 PF06825.12 gi|433593513|ref|YP_007296254.1| - 0.0024 17.7 6.2 0.016 15.0 0.8 2.6 1 1 0 2 2 2 1 Heat shock factor binding protein 1 SKA1 PF07160.12 gi|433593513|ref|YP_007296254.1| - 0.0035 17.2 1.0 0.0057 16.5 1.0 1.3 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 1 Herpes_UL14 PF03580.14 gi|433593513|ref|YP_007296254.1| - 0.0048 17.2 1.4 0.0088 16.3 1.4 1.4 1 0 0 1 1 1 1 Herpesvirus UL14-like protein Atg14 PF10186.9 gi|433593513|ref|YP_007296254.1| - 0.018 14.2 7.6 0.028 13.5 7.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DDE_Tnp_IS240 PF13610.6 gi|433593513|ref|YP_007296254.1| - 0.019 15.2 2.0 0.087 13.1 0.0 2.4 2 1 0 2 2 2 0 DDE domain YkyA PF10368.9 gi|433593513|ref|YP_007296254.1| - 0.021 14.5 9.5 0.035 13.8 9.5 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein HemX PF04375.14 gi|433593513|ref|YP_007296254.1| - 0.024 13.9 4.1 0.038 13.3 4.1 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase PKcGMP_CC PF16808.5 gi|433593513|ref|YP_007296254.1| - 0.026 14.4 26.3 0.13 12.1 6.8 2.6 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Fmp27_WPPW PF10359.9 gi|433593513|ref|YP_007296254.1| - 0.031 13.1 5.6 0.049 12.5 5.6 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Exonuc_VII_L PF02601.15 gi|433593513|ref|YP_007296254.1| - 0.036 13.6 3.6 0.064 12.8 3.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit ATG16 PF08614.11 gi|433593513|ref|YP_007296254.1| - 0.051 13.8 10.6 0.1 12.8 10.6 1.5 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|433593513|ref|YP_007296254.1| - 0.061 12.0 8.2 0.088 11.4 8.2 1.1 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|433593513|ref|YP_007296254.1| - 0.099 12.7 2.7 0.25 11.4 2.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon GAS PF13851.6 gi|433593513|ref|YP_007296254.1| - 0.11 11.9 9.7 0.2 11.0 9.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cortex-I_coil PF09304.10 gi|433593513|ref|YP_007296254.1| - 0.11 12.7 10.5 0.23 11.7 10.5 1.5 1 0 0 1 1 1 0 Cortexillin I, coiled coil Phage_GPO PF05929.11 gi|433593513|ref|YP_007296254.1| - 0.11 12.1 3.1 0.18 11.4 3.1 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF3552 PF12072.8 gi|433593513|ref|YP_007296254.1| - 0.11 11.9 15.6 0.2 11.1 15.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Terminase_4 PF05119.12 gi|433593513|ref|YP_007296254.1| - 0.14 12.6 0.7 0.73 10.3 0.2 2.3 2 0 0 2 2 2 0 Phage terminase, small subunit DUF1664 PF07889.12 gi|433593513|ref|YP_007296254.1| - 0.15 12.1 5.3 0.3 11.1 5.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|433593513|ref|YP_007296254.1| - 0.15 10.9 11.6 0.17 10.7 10.5 1.6 2 0 0 2 2 1 0 Spc7 kinetochore protein FliD_C PF07195.12 gi|433593513|ref|YP_007296254.1| - 0.17 11.3 3.8 0.26 10.7 3.8 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TMF_DNA_bd PF12329.8 gi|433593513|ref|YP_007296254.1| - 0.17 11.9 12.6 0.34 10.9 12.6 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.10 gi|433593513|ref|YP_007296254.1| - 0.18 12.0 5.5 0.39 10.9 5.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family CSN5_C PF18323.1 gi|433593513|ref|YP_007296254.1| - 0.19 12.7 0.7 5.4 8.0 0.8 2.6 2 0 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain FAM76 PF16046.5 gi|433593513|ref|YP_007296254.1| - 0.23 10.8 4.0 0.37 10.1 4.0 1.3 1 0 0 1 1 1 0 FAM76 protein WASH_WAHD PF11945.8 gi|433593513|ref|YP_007296254.1| - 0.27 10.7 7.2 0.39 10.2 7.2 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex DUF724 PF05266.14 gi|433593513|ref|YP_007296254.1| - 0.27 11.0 6.4 0.46 10.3 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Allexi_40kDa PF05549.11 gi|433593513|ref|YP_007296254.1| - 0.32 10.5 2.8 0.55 9.7 2.8 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3584 PF12128.8 gi|433593513|ref|YP_007296254.1| - 0.36 8.3 7.2 0.51 7.8 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TMPIT PF07851.13 gi|433593513|ref|YP_007296254.1| - 0.36 10.0 4.1 0.57 9.4 4.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein Flagellin_C PF00700.21 gi|433593513|ref|YP_007296254.1| - 0.39 11.1 1.2 0.79 10.1 1.2 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region ACCA PF03255.14 gi|433593513|ref|YP_007296254.1| - 0.5 10.2 5.0 1.3 8.9 5.0 1.7 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1910 PF08928.10 gi|433593513|ref|YP_007296254.1| - 0.66 10.0 3.8 1.7 8.6 3.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1910) LUC7 PF03194.15 gi|433593513|ref|YP_007296254.1| - 0.69 9.5 7.5 1.4 8.5 7.5 1.4 1 0 0 1 1 1 0 LUC7 N_terminus zf-FPG_IleRS PF06827.14 gi|433593513|ref|YP_007296254.1| - 0.81 9.6 4.3 8.7 6.3 0.2 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS ExsD PF16806.5 gi|433593513|ref|YP_007296254.1| - 1 9.3 5.1 14 5.6 4.3 2.1 2 0 0 2 2 2 0 Antiactivator protein ExsD DUF4407 PF14362.6 gi|433593513|ref|YP_007296254.1| - 1 8.7 3.5 1.7 7.9 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RmuC PF02646.16 gi|433593513|ref|YP_007296254.1| - 1.1 8.4 7.0 1.7 7.7 7.0 1.2 1 0 0 1 1 1 0 RmuC family FemAB PF02388.16 gi|433593513|ref|YP_007296254.1| - 1.1 8.0 6.1 1.7 7.4 6.1 1.1 1 0 0 1 1 1 0 FemAB family Fzo_mitofusin PF04799.13 gi|433593513|ref|YP_007296254.1| - 1.4 8.4 6.1 2.5 7.6 6.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region Zn-ribbon_8 PF09723.10 gi|433593513|ref|YP_007296254.1| - 1.6 8.9 5.5 14 5.9 0.8 2.7 2 0 0 2 2 2 0 Zinc ribbon domain DUF1465 PF07323.12 gi|433593513|ref|YP_007296254.1| - 1.8 8.4 6.9 1.4 8.7 3.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1465) DUF3450 PF11932.8 gi|433593513|ref|YP_007296254.1| - 2.1 7.6 15.5 1.5 8.1 10.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) DUF2203 PF09969.9 gi|433593513|ref|YP_007296254.1| - 2.1 9.1 8.1 5.8 7.7 6.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 gi|433593513|ref|YP_007296254.1| - 2.3 6.1 4.9 3.2 5.6 4.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MPS2 PF17060.5 gi|433593513|ref|YP_007296254.1| - 2.4 7.4 6.1 3.7 6.7 6.1 1.2 1 0 0 1 1 1 0 Monopolar spindle protein 2 Kre28 PF17097.5 gi|433593513|ref|YP_007296254.1| - 4 6.3 12.8 0.37 9.7 8.3 1.4 2 0 0 2 2 1 0 Spindle pole body component ABC_tran_CTD PF16326.5 gi|433593513|ref|YP_007296254.1| - 6.3 7.1 22.3 1 9.7 16.9 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain DLP_helical PF18709.1 gi|433593513|ref|YP_007296254.1| - 6.7 5.8 8.2 12 5.0 8.2 1.3 1 0 0 1 1 1 0 Dynamin-like helical domain DDE_Tnp_IS66 PF03050.14 gi|433593514|ref|YP_007296255.1| - 2.7e-49 168.2 0.1 2.7e-49 168.2 0.1 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.12 gi|433593514|ref|YP_007296255.1| - 7.4e-09 36.1 7.8 2e-08 34.7 7.8 1.8 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.7 gi|433593514|ref|YP_007296255.1| - 9e-06 26.0 5.0 9e-06 26.0 5.0 2.7 3 0 0 3 3 1 1 zinc-finger binding domain of transposase IS66 MscS_porin PF12795.7 gi|433593514|ref|YP_007296255.1| - 9.7e-06 25.3 6.6 1.7e-05 24.5 6.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.16 gi|433593514|ref|YP_007296255.1| - 0.00055 20.4 7.2 0.0011 19.4 7.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF16 UPF0242 PF06785.11 gi|433593514|ref|YP_007296255.1| - 0.0015 18.7 13.2 0.0025 17.9 13.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus HSBP1 PF06825.12 gi|433593514|ref|YP_007296255.1| - 0.0024 17.7 6.2 0.016 15.0 0.8 2.6 1 1 0 2 2 2 1 Heat shock factor binding protein 1 SKA1 PF07160.12 gi|433593514|ref|YP_007296255.1| - 0.0035 17.2 1.0 0.0057 16.5 1.0 1.3 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 1 Herpes_UL14 PF03580.14 gi|433593514|ref|YP_007296255.1| - 0.0048 17.2 1.4 0.0088 16.3 1.4 1.4 1 0 0 1 1 1 1 Herpesvirus UL14-like protein Atg14 PF10186.9 gi|433593514|ref|YP_007296255.1| - 0.018 14.2 7.6 0.028 13.5 7.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DDE_Tnp_IS240 PF13610.6 gi|433593514|ref|YP_007296255.1| - 0.019 15.2 2.0 0.087 13.1 0.0 2.4 2 1 0 2 2 2 0 DDE domain YkyA PF10368.9 gi|433593514|ref|YP_007296255.1| - 0.021 14.5 9.5 0.035 13.8 9.5 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein HemX PF04375.14 gi|433593514|ref|YP_007296255.1| - 0.024 13.9 4.1 0.038 13.3 4.1 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase PKcGMP_CC PF16808.5 gi|433593514|ref|YP_007296255.1| - 0.026 14.4 26.3 0.13 12.1 6.8 2.6 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Fmp27_WPPW PF10359.9 gi|433593514|ref|YP_007296255.1| - 0.031 13.1 5.6 0.049 12.5 5.6 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Exonuc_VII_L PF02601.15 gi|433593514|ref|YP_007296255.1| - 0.036 13.6 3.6 0.064 12.8 3.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit ATG16 PF08614.11 gi|433593514|ref|YP_007296255.1| - 0.051 13.8 10.6 0.1 12.8 10.6 1.5 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|433593514|ref|YP_007296255.1| - 0.061 12.0 8.2 0.088 11.4 8.2 1.1 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|433593514|ref|YP_007296255.1| - 0.099 12.7 2.7 0.25 11.4 2.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon GAS PF13851.6 gi|433593514|ref|YP_007296255.1| - 0.11 11.9 9.7 0.2 11.0 9.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cortex-I_coil PF09304.10 gi|433593514|ref|YP_007296255.1| - 0.11 12.7 10.5 0.23 11.7 10.5 1.5 1 0 0 1 1 1 0 Cortexillin I, coiled coil Phage_GPO PF05929.11 gi|433593514|ref|YP_007296255.1| - 0.11 12.1 3.1 0.18 11.4 3.1 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF3552 PF12072.8 gi|433593514|ref|YP_007296255.1| - 0.11 11.9 15.6 0.2 11.1 15.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Terminase_4 PF05119.12 gi|433593514|ref|YP_007296255.1| - 0.14 12.6 0.7 0.73 10.3 0.2 2.3 2 0 0 2 2 2 0 Phage terminase, small subunit DUF1664 PF07889.12 gi|433593514|ref|YP_007296255.1| - 0.15 12.1 5.3 0.3 11.1 5.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|433593514|ref|YP_007296255.1| - 0.15 10.9 11.6 0.17 10.7 10.5 1.6 2 0 0 2 2 1 0 Spc7 kinetochore protein FliD_C PF07195.12 gi|433593514|ref|YP_007296255.1| - 0.17 11.3 3.8 0.26 10.7 3.8 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TMF_DNA_bd PF12329.8 gi|433593514|ref|YP_007296255.1| - 0.17 11.9 12.6 0.34 10.9 12.6 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.10 gi|433593514|ref|YP_007296255.1| - 0.18 12.0 5.5 0.39 10.9 5.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family CSN5_C PF18323.1 gi|433593514|ref|YP_007296255.1| - 0.19 12.7 0.7 5.4 8.0 0.8 2.6 2 0 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain FAM76 PF16046.5 gi|433593514|ref|YP_007296255.1| - 0.23 10.8 4.0 0.37 10.1 4.0 1.3 1 0 0 1 1 1 0 FAM76 protein WASH_WAHD PF11945.8 gi|433593514|ref|YP_007296255.1| - 0.27 10.7 7.2 0.39 10.2 7.2 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex DUF724 PF05266.14 gi|433593514|ref|YP_007296255.1| - 0.27 11.0 6.4 0.46 10.3 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Allexi_40kDa PF05549.11 gi|433593514|ref|YP_007296255.1| - 0.32 10.5 2.8 0.55 9.7 2.8 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3584 PF12128.8 gi|433593514|ref|YP_007296255.1| - 0.36 8.3 7.2 0.51 7.8 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TMPIT PF07851.13 gi|433593514|ref|YP_007296255.1| - 0.36 10.0 4.1 0.57 9.4 4.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein Flagellin_C PF00700.21 gi|433593514|ref|YP_007296255.1| - 0.39 11.1 1.2 0.79 10.1 1.2 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region ACCA PF03255.14 gi|433593514|ref|YP_007296255.1| - 0.5 10.2 5.0 1.3 8.9 5.0 1.7 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1910 PF08928.10 gi|433593514|ref|YP_007296255.1| - 0.66 10.0 3.8 1.7 8.6 3.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1910) LUC7 PF03194.15 gi|433593514|ref|YP_007296255.1| - 0.69 9.5 7.5 1.4 8.5 7.5 1.4 1 0 0 1 1 1 0 LUC7 N_terminus zf-FPG_IleRS PF06827.14 gi|433593514|ref|YP_007296255.1| - 0.81 9.6 4.3 8.7 6.3 0.2 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS ExsD PF16806.5 gi|433593514|ref|YP_007296255.1| - 1 9.3 5.1 14 5.6 4.3 2.1 2 0 0 2 2 2 0 Antiactivator protein ExsD DUF4407 PF14362.6 gi|433593514|ref|YP_007296255.1| - 1 8.7 3.5 1.7 7.9 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RmuC PF02646.16 gi|433593514|ref|YP_007296255.1| - 1.1 8.4 7.0 1.7 7.7 7.0 1.2 1 0 0 1 1 1 0 RmuC family FemAB PF02388.16 gi|433593514|ref|YP_007296255.1| - 1.1 8.0 6.1 1.7 7.4 6.1 1.1 1 0 0 1 1 1 0 FemAB family Fzo_mitofusin PF04799.13 gi|433593514|ref|YP_007296255.1| - 1.4 8.4 6.1 2.5 7.6 6.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region Zn-ribbon_8 PF09723.10 gi|433593514|ref|YP_007296255.1| - 1.6 8.9 5.5 14 5.9 0.8 2.7 2 0 0 2 2 2 0 Zinc ribbon domain DUF1465 PF07323.12 gi|433593514|ref|YP_007296255.1| - 1.8 8.4 6.9 1.4 8.7 3.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1465) DUF3450 PF11932.8 gi|433593514|ref|YP_007296255.1| - 2.1 7.6 15.5 1.5 8.1 10.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) DUF2203 PF09969.9 gi|433593514|ref|YP_007296255.1| - 2.1 9.1 8.1 5.8 7.7 6.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 gi|433593514|ref|YP_007296255.1| - 2.3 6.1 4.9 3.2 5.6 4.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MPS2 PF17060.5 gi|433593514|ref|YP_007296255.1| - 2.4 7.4 6.1 3.7 6.7 6.1 1.2 1 0 0 1 1 1 0 Monopolar spindle protein 2 Kre28 PF17097.5 gi|433593514|ref|YP_007296255.1| - 4 6.3 12.8 0.37 9.7 8.3 1.4 2 0 0 2 2 1 0 Spindle pole body component ABC_tran_CTD PF16326.5 gi|433593514|ref|YP_007296255.1| - 6.3 7.1 22.3 1 9.7 16.9 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain DLP_helical PF18709.1 gi|433593514|ref|YP_007296255.1| - 6.7 5.8 8.2 12 5.0 8.2 1.3 1 0 0 1 1 1 0 Dynamin-like helical domain Peptidase_M48 PF01435.18 gi|433593516|ref|YP_007296257.1| - 2.8e-22 79.4 0.0 5.5e-22 78.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|433593516|ref|YP_007296257.1| - 0.01 15.0 3.7 0.025 13.8 0.0 2.5 3 0 0 3 3 3 0 BlaR1 peptidase M56 DUF3784 PF12650.7 gi|433593516|ref|YP_007296257.1| - 0.016 15.4 4.6 0.016 15.4 4.6 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF3784) SprT-like PF10263.9 gi|433593516|ref|YP_007296257.1| - 0.046 13.6 0.0 0.076 12.9 0.0 1.3 1 0 0 1 1 1 0 SprT-like family DUF1275 PF06912.11 gi|433593517|ref|YP_007296258.1| - 0.056 13.4 3.3 0.063 13.2 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) CobD_Cbib PF03186.13 gi|433593517|ref|YP_007296258.1| - 0.068 12.4 0.6 0.088 12.0 0.6 1.2 1 0 0 1 1 1 0 CobD/Cbib protein Wzy_C_2 PF11846.8 gi|433593517|ref|YP_007296258.1| - 0.19 11.6 0.7 0.25 11.2 0.7 1.2 1 0 0 1 1 1 0 Virulence factor membrane-bound polymerase, C-terminal DDE_Tnp_IS66 PF03050.14 gi|433593519|ref|YP_007296260.1| - 2.7e-49 168.2 0.1 2.7e-49 168.2 0.1 2.1 2 0 0 2 2 2 1 Transposase IS66 family SlyX PF04102.12 gi|433593519|ref|YP_007296260.1| - 7.4e-09 36.1 7.8 2e-08 34.7 7.8 1.8 1 0 0 1 1 1 1 SlyX zf-IS66 PF13005.7 gi|433593519|ref|YP_007296260.1| - 9e-06 26.0 5.0 9e-06 26.0 5.0 2.7 3 0 0 3 3 1 1 zinc-finger binding domain of transposase IS66 MscS_porin PF12795.7 gi|433593519|ref|YP_007296260.1| - 9.7e-06 25.3 6.6 1.7e-05 24.5 6.6 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF16 PF01519.16 gi|433593519|ref|YP_007296260.1| - 0.00055 20.4 7.2 0.0011 19.4 7.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF16 UPF0242 PF06785.11 gi|433593519|ref|YP_007296260.1| - 0.0015 18.7 13.2 0.0025 17.9 13.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus HSBP1 PF06825.12 gi|433593519|ref|YP_007296260.1| - 0.0024 17.7 6.2 0.016 15.0 0.8 2.6 1 1 0 2 2 2 1 Heat shock factor binding protein 1 SKA1 PF07160.12 gi|433593519|ref|YP_007296260.1| - 0.0035 17.2 1.0 0.0057 16.5 1.0 1.3 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 1 Herpes_UL14 PF03580.14 gi|433593519|ref|YP_007296260.1| - 0.0048 17.2 1.4 0.0088 16.3 1.4 1.4 1 0 0 1 1 1 1 Herpesvirus UL14-like protein Atg14 PF10186.9 gi|433593519|ref|YP_007296260.1| - 0.018 14.2 7.6 0.028 13.5 7.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DDE_Tnp_IS240 PF13610.6 gi|433593519|ref|YP_007296260.1| - 0.019 15.2 2.0 0.087 13.1 0.0 2.4 2 1 0 2 2 2 0 DDE domain YkyA PF10368.9 gi|433593519|ref|YP_007296260.1| - 0.021 14.5 9.5 0.035 13.8 9.5 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein HemX PF04375.14 gi|433593519|ref|YP_007296260.1| - 0.024 13.9 4.1 0.038 13.3 4.1 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase PKcGMP_CC PF16808.5 gi|433593519|ref|YP_007296260.1| - 0.026 14.4 26.3 0.13 12.1 6.8 2.6 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Fmp27_WPPW PF10359.9 gi|433593519|ref|YP_007296260.1| - 0.031 13.1 5.6 0.049 12.5 5.6 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Exonuc_VII_L PF02601.15 gi|433593519|ref|YP_007296260.1| - 0.036 13.6 3.6 0.064 12.8 3.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit ATG16 PF08614.11 gi|433593519|ref|YP_007296260.1| - 0.051 13.8 10.6 0.1 12.8 10.6 1.5 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|433593519|ref|YP_007296260.1| - 0.061 12.0 8.2 0.088 11.4 8.2 1.1 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|433593519|ref|YP_007296260.1| - 0.099 12.7 2.7 0.25 11.4 2.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon GAS PF13851.6 gi|433593519|ref|YP_007296260.1| - 0.11 11.9 9.7 0.2 11.0 9.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cortex-I_coil PF09304.10 gi|433593519|ref|YP_007296260.1| - 0.11 12.7 10.5 0.23 11.7 10.5 1.5 1 0 0 1 1 1 0 Cortexillin I, coiled coil Phage_GPO PF05929.11 gi|433593519|ref|YP_007296260.1| - 0.11 12.1 3.1 0.18 11.4 3.1 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF3552 PF12072.8 gi|433593519|ref|YP_007296260.1| - 0.11 11.9 15.6 0.2 11.1 15.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Terminase_4 PF05119.12 gi|433593519|ref|YP_007296260.1| - 0.14 12.6 0.7 0.73 10.3 0.2 2.3 2 0 0 2 2 2 0 Phage terminase, small subunit DUF1664 PF07889.12 gi|433593519|ref|YP_007296260.1| - 0.15 12.1 5.3 0.3 11.1 5.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|433593519|ref|YP_007296260.1| - 0.15 10.9 11.6 0.17 10.7 10.5 1.6 2 0 0 2 2 1 0 Spc7 kinetochore protein FliD_C PF07195.12 gi|433593519|ref|YP_007296260.1| - 0.17 11.3 3.8 0.26 10.7 3.8 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TMF_DNA_bd PF12329.8 gi|433593519|ref|YP_007296260.1| - 0.17 11.9 12.6 0.34 10.9 12.6 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.10 gi|433593519|ref|YP_007296260.1| - 0.18 12.0 5.5 0.39 10.9 5.5 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family CSN5_C PF18323.1 gi|433593519|ref|YP_007296260.1| - 0.19 12.7 0.7 5.4 8.0 0.8 2.6 2 0 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain FAM76 PF16046.5 gi|433593519|ref|YP_007296260.1| - 0.23 10.8 4.0 0.37 10.1 4.0 1.3 1 0 0 1 1 1 0 FAM76 protein WASH_WAHD PF11945.8 gi|433593519|ref|YP_007296260.1| - 0.27 10.7 7.2 0.39 10.2 7.2 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex DUF724 PF05266.14 gi|433593519|ref|YP_007296260.1| - 0.27 11.0 6.4 0.46 10.3 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Allexi_40kDa PF05549.11 gi|433593519|ref|YP_007296260.1| - 0.32 10.5 2.8 0.55 9.7 2.8 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3584 PF12128.8 gi|433593519|ref|YP_007296260.1| - 0.36 8.3 7.2 0.51 7.8 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TMPIT PF07851.13 gi|433593519|ref|YP_007296260.1| - 0.36 10.0 4.1 0.57 9.4 4.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein Flagellin_C PF00700.21 gi|433593519|ref|YP_007296260.1| - 0.39 11.1 1.2 0.79 10.1 1.2 1.4 1 0 0 1 1 1 0 Bacterial flagellin C-terminal helical region ACCA PF03255.14 gi|433593519|ref|YP_007296260.1| - 0.5 10.2 5.0 1.3 8.9 5.0 1.7 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1910 PF08928.10 gi|433593519|ref|YP_007296260.1| - 0.66 10.0 3.8 1.7 8.6 3.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1910) LUC7 PF03194.15 gi|433593519|ref|YP_007296260.1| - 0.69 9.5 7.5 1.4 8.5 7.5 1.4 1 0 0 1 1 1 0 LUC7 N_terminus zf-FPG_IleRS PF06827.14 gi|433593519|ref|YP_007296260.1| - 0.81 9.6 4.3 8.7 6.3 0.2 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS ExsD PF16806.5 gi|433593519|ref|YP_007296260.1| - 1 9.3 5.1 14 5.6 4.3 2.1 2 0 0 2 2 2 0 Antiactivator protein ExsD DUF4407 PF14362.6 gi|433593519|ref|YP_007296260.1| - 1 8.7 3.5 1.7 7.9 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RmuC PF02646.16 gi|433593519|ref|YP_007296260.1| - 1.1 8.4 7.0 1.7 7.7 7.0 1.2 1 0 0 1 1 1 0 RmuC family FemAB PF02388.16 gi|433593519|ref|YP_007296260.1| - 1.1 8.0 6.1 1.7 7.4 6.1 1.1 1 0 0 1 1 1 0 FemAB family Fzo_mitofusin PF04799.13 gi|433593519|ref|YP_007296260.1| - 1.4 8.4 6.1 2.5 7.6 6.1 1.3 1 0 0 1 1 1 0 fzo-like conserved region Zn-ribbon_8 PF09723.10 gi|433593519|ref|YP_007296260.1| - 1.6 8.9 5.5 14 5.9 0.8 2.7 2 0 0 2 2 2 0 Zinc ribbon domain DUF1465 PF07323.12 gi|433593519|ref|YP_007296260.1| - 1.8 8.4 6.9 1.4 8.7 3.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1465) DUF3450 PF11932.8 gi|433593519|ref|YP_007296260.1| - 2.1 7.6 15.5 1.5 8.1 10.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) DUF2203 PF09969.9 gi|433593519|ref|YP_007296260.1| - 2.1 9.1 8.1 5.8 7.7 6.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.19 gi|433593519|ref|YP_007296260.1| - 2.3 6.1 4.9 3.2 5.6 4.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MPS2 PF17060.5 gi|433593519|ref|YP_007296260.1| - 2.4 7.4 6.1 3.7 6.7 6.1 1.2 1 0 0 1 1 1 0 Monopolar spindle protein 2 Kre28 PF17097.5 gi|433593519|ref|YP_007296260.1| - 4 6.3 12.8 0.37 9.7 8.3 1.4 2 0 0 2 2 1 0 Spindle pole body component ABC_tran_CTD PF16326.5 gi|433593519|ref|YP_007296260.1| - 6.3 7.1 22.3 1 9.7 16.9 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain DLP_helical PF18709.1 gi|433593519|ref|YP_007296260.1| - 6.7 5.8 8.2 12 5.0 8.2 1.3 1 0 0 1 1 1 0 Dynamin-like helical domain PQQ_2 PF13360.6 gi|433593520|ref|YP_007296261.1| - 1e-29 103.8 17.7 3.1e-12 46.6 3.0 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|433593520|ref|YP_007296261.1| - 3.1e-20 72.0 24.5 0.0018 18.7 0.0 8.6 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.21 gi|433593520|ref|YP_007296261.1| - 1.4e-11 43.7 13.5 0.0074 16.2 0.2 7.9 8 0 0 8 8 8 4 PQQ enzyme repeat Me-amine-dh_H PF06433.11 gi|433593520|ref|YP_007296261.1| - 0.045 12.6 0.0 0.094 11.6 0.0 1.4 1 0 0 1 1 1 0 Methylamine dehydrogenase heavy chain (MADH) Yip1 PF04893.17 gi|433593521|ref|YP_007296262.1| - 7e-10 38.9 12.0 1.2e-09 38.1 12.0 1.4 1 1 0 1 1 1 1 Yip1 domain IncD PF17628.2 gi|433593521|ref|YP_007296262.1| - 4.2 7.1 4.9 5.1 6.9 4.1 1.6 1 1 0 1 1 1 0 Inclusion membrane protein D Peptidase_M48 PF01435.18 gi|433593522|ref|YP_007296263.1| - 9.8e-26 90.7 0.0 1.8e-25 89.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|433593522|ref|YP_007296263.1| - 0.0054 16.0 1.9 0.0054 16.0 1.9 1.9 1 1 1 2 2 2 1 BlaR1 peptidase M56 DUF4157 PF13699.6 gi|433593522|ref|YP_007296263.1| - 1.3 9.3 4.4 0.43 10.9 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) Phage_holin_3_6 PF07332.11 gi|433593522|ref|YP_007296263.1| - 1.8 8.7 12.8 0.072 13.1 4.4 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Neurensin PF14927.6 gi|433593522|ref|YP_007296263.1| - 3.8 7.2 4.9 5.1 6.8 0.0 2.5 1 1 1 2 2 2 0 Neurensin DUF2583 PF10762.9 gi|433593522|ref|YP_007296263.1| - 5 7.6 10.9 11 6.5 0.4 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) DDE_Tnp_IS1595 PF12762.7 gi|433593523|ref|YP_007296264.1| - 4.5e-15 56.0 0.1 1.1e-14 54.7 0.0 1.7 2 0 0 2 2 2 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|433593523|ref|YP_007296264.1| - 0.0002 21.3 3.2 0.0005 20.0 3.2 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|433593523|ref|YP_007296264.1| - 0.00092 18.9 0.7 0.00092 18.9 0.7 1.9 2 0 0 2 2 2 1 InsA N-terminal domain zf-Sec23_Sec24 PF04810.15 gi|433593523|ref|YP_007296264.1| - 0.14 12.2 0.8 0.59 10.2 0.2 2.3 3 0 0 3 3 3 0 Sec23/Sec24 zinc finger SpoIIIAH PF12685.7 gi|433593524|ref|YP_007296265.1| - 1.9 8.3 15.1 2.7 7.8 15.1 1.3 1 1 0 1 1 1 0 SpoIIIAH-like protein AAA_31 PF13614.6 gi|433593525|ref|YP_007296266.1| - 1.1e-23 84.1 0.0 1.6e-23 83.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|433593525|ref|YP_007296266.1| - 5.7e-15 55.5 0.0 9.3e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|433593525|ref|YP_007296266.1| - 3.3e-06 26.6 0.0 0.0023 17.3 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|433593525|ref|YP_007296266.1| - 3.3e-05 23.5 0.1 9.6e-05 22.0 0.1 1.6 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|433593525|ref|YP_007296266.1| - 0.00019 21.0 0.5 0.00067 19.2 0.5 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|433593525|ref|YP_007296266.1| - 0.00054 19.3 0.2 0.001 18.3 0.2 1.5 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|433593525|ref|YP_007296266.1| - 0.0095 15.5 0.3 0.026 14.1 0.3 1.9 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|433593525|ref|YP_007296266.1| - 0.023 14.1 0.0 0.053 13.0 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 gi|433593525|ref|YP_007296266.1| - 0.027 14.3 0.0 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|433593525|ref|YP_007296266.1| - 0.042 13.5 0.2 1.4 8.5 0.0 2.7 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|433593525|ref|YP_007296266.1| - 0.064 13.2 0.0 0.18 11.7 0.0 1.7 2 0 0 2 2 2 0 NTPase Cdc6_C PF09079.11 gi|433593526|ref|YP_007296267.1| - 3.2e-16 59.1 0.6 1.1e-15 57.3 0.1 2.1 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|433593526|ref|YP_007296267.1| - 2.3e-11 44.1 0.5 4.2e-10 40.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|433593526|ref|YP_007296267.1| - 3.3e-08 34.1 0.6 9.2e-08 32.6 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|433593526|ref|YP_007296267.1| - 1.5e-05 25.0 0.1 3.1e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|433593526|ref|YP_007296267.1| - 4.6e-05 22.9 0.0 9.5e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA PF00004.29 gi|433593526|ref|YP_007296267.1| - 0.00065 20.1 0.3 0.0041 17.5 0.3 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|433593526|ref|YP_007296267.1| - 0.005 16.3 0.0 0.0078 15.6 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|433593526|ref|YP_007296267.1| - 0.0057 16.6 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.13 gi|433593526|ref|YP_007296267.1| - 0.018 14.2 0.3 0.042 13.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Microtub_bd PF16796.5 gi|433593526|ref|YP_007296267.1| - 0.027 14.4 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 Microtubule binding AAA_7 PF12775.7 gi|433593526|ref|YP_007296267.1| - 0.028 13.9 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|433593526|ref|YP_007296267.1| - 0.049 12.8 0.0 0.11 11.7 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_19 PF13245.6 gi|433593526|ref|YP_007296267.1| - 0.056 13.8 0.0 0.19 12.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain P-II PF00543.22 gi|433593526|ref|YP_007296267.1| - 0.067 13.8 0.1 0.23 12.1 0.0 1.9 2 0 0 2 2 2 0 Nitrogen regulatory protein P-II Mnd1 PF03962.15 gi|433593526|ref|YP_007296267.1| - 0.11 12.7 0.0 3.6 7.9 0.0 2.6 2 0 0 2 2 2 0 Mnd1 HTH domain CBFB_NFYA PF02045.15 gi|433593526|ref|YP_007296267.1| - 0.17 12.5 0.0 0.69 10.6 0.0 2.0 2 0 0 2 2 2 0 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B DDE_Tnp_1 PF01609.21 gi|433593527|ref|YP_007296268.1| - 3.2e-10 40.0 3.3 4.9e-10 39.4 3.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593527|ref|YP_007296268.1| - 0.17 11.9 0.5 0.48 10.5 0.3 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|433593528|ref|YP_007296269.1| - 0.04 13.6 0.1 0.12 12.0 0.1 1.7 1 1 0 1 1 1 0 Transposase DDE domain Calci_bind_CcbP PF11535.8 gi|433593529|ref|YP_007296270.1| - 6.8e-41 139.0 0.3 8e-41 138.8 0.3 1.1 1 0 0 1 1 1 1 Calcium binding DUF4635 PF15466.6 gi|433593529|ref|YP_007296270.1| - 0.08 12.5 0.1 0.1 12.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4635) ERCC3_RAD25_C PF16203.5 gi|433593530|ref|YP_007296271.1| - 4.1e-23 81.9 0.3 6.1e-23 81.3 0.3 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|433593530|ref|YP_007296271.1| - 2e-21 76.8 0.0 8.4e-21 74.7 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|433593530|ref|YP_007296271.1| - 4.9e-17 62.3 0.1 4.9e-17 62.3 0.1 2.0 3 0 0 3 3 3 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|433593530|ref|YP_007296271.1| - 5.3e-13 48.6 1.3 2.4e-12 46.5 1.3 2.2 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|433593530|ref|YP_007296271.1| - 7.3e-09 35.6 0.0 1.9e-08 34.3 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|433593530|ref|YP_007296271.1| - 0.1 12.8 0.6 4.7 7.4 0.0 3.2 1 1 1 2 2 2 0 Helicase C-terminal domain IstB_IS21 PF01695.17 gi|433593530|ref|YP_007296271.1| - 0.11 12.2 0.0 1.4 8.6 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF790 PF05626.11 gi|433593531|ref|YP_007296272.1| - 8.4e-139 462.6 0.0 9.5e-139 462.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) CSTF2_hinge PF14327.6 gi|433593532|ref|YP_007296273.1| - 0.031 14.7 0.0 0.051 14.0 0.0 1.2 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 DUF2274 PF10038.9 gi|433593532|ref|YP_007296273.1| - 0.13 12.7 1.2 4.1 7.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2274) MarR_2 PF12802.7 gi|433593533|ref|YP_007296274.1| - 2.3e-15 56.2 1.6 1.6e-08 34.3 0.6 2.6 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|433593533|ref|YP_007296274.1| - 4.8e-10 39.2 0.1 0.00017 21.4 0.0 2.6 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|433593533|ref|YP_007296274.1| - 5.5e-09 35.4 0.1 0.0032 17.0 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|433593533|ref|YP_007296274.1| - 8.8e-08 32.0 0.0 0.0045 16.9 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.6 gi|433593533|ref|YP_007296274.1| - 2.2e-07 31.3 1.1 3.7e-06 27.3 0.3 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|433593533|ref|YP_007296274.1| - 2.4e-07 31.0 0.0 0.016 15.5 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_IclR PF09339.10 gi|433593533|ref|YP_007296274.1| - 3.8e-07 29.8 0.2 0.041 13.7 0.1 2.9 3 0 0 3 3 2 2 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|433593533|ref|YP_007296274.1| - 6.7e-07 29.2 0.0 0.0006 19.7 0.0 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|433593533|ref|YP_007296274.1| - 7.7e-07 29.1 0.2 0.048 13.7 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_29 PF13551.6 gi|433593533|ref|YP_007296274.1| - 5e-06 26.4 0.2 0.035 14.1 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn helix HTH_23 PF13384.6 gi|433593533|ref|YP_007296274.1| - 6.1e-06 25.9 0.0 0.019 14.7 0.0 2.6 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 gi|433593533|ref|YP_007296274.1| - 0.00011 22.2 0.3 0.038 14.1 0.0 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain GntR PF00392.21 gi|433593533|ref|YP_007296274.1| - 0.00063 19.4 0.1 1.8 8.2 0.0 2.7 3 0 0 3 3 3 2 Bacterial regulatory proteins, gntR family Crp PF00325.20 gi|433593533|ref|YP_007296274.1| - 0.001 18.7 1.2 0.026 14.2 0.3 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family Penicillinase_R PF03965.16 gi|433593533|ref|YP_007296274.1| - 0.0011 19.3 0.0 1.9 8.9 0.0 2.5 2 0 0 2 2 2 2 Penicillinase repressor HTH_5 PF01022.20 gi|433593533|ref|YP_007296274.1| - 0.0022 17.8 0.0 3.2 7.7 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family DUF746 PF05344.11 gi|433593533|ref|YP_007296274.1| - 0.013 15.3 0.0 0.044 13.6 0.0 1.9 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_38 PF13936.6 gi|433593533|ref|YP_007296274.1| - 0.032 14.0 0.8 2.9 7.7 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|433593533|ref|YP_007296274.1| - 0.11 13.0 0.0 0.25 11.9 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_41 PF14502.6 gi|433593533|ref|YP_007296274.1| - 0.18 11.5 0.0 0.7 9.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain RPA_C PF08784.11 gi|433593533|ref|YP_007296274.1| - 0.21 12.2 0.0 0.45 11.2 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal DUF2204 PF09970.9 gi|433593534|ref|YP_007296275.1| - 0.0017 18.0 0.3 0.021 14.5 0.1 2.2 2 0 0 2 2 2 1 Nucleotidyl transferase of unknown function (DUF2204) HTH_20 PF12840.7 gi|433593534|ref|YP_007296275.1| - 0.0039 17.2 0.1 0.0084 16.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|433593534|ref|YP_007296275.1| - 0.011 15.5 0.0 0.031 14.1 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain IF2_N PF04760.15 gi|433593534|ref|YP_007296275.1| - 0.11 12.4 0.0 0.31 10.9 0.0 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region SWIM PF04434.17 gi|433593536|ref|YP_007296277.1| - 0.00026 20.6 0.3 0.00071 19.2 0.3 1.7 1 1 0 1 1 1 1 SWIM zinc finger DUF4379 PF14311.6 gi|433593536|ref|YP_007296277.1| - 0.027 14.8 0.2 0.068 13.5 0.2 1.6 1 0 0 1 1 1 0 Probable Zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|433593536|ref|YP_007296277.1| - 0.11 12.3 1.8 0.2 11.4 1.8 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|433593536|ref|YP_007296277.1| - 3.4 7.9 7.0 0.69 10.1 0.9 2.5 2 1 0 2 2 2 0 Zinc ribbon domain TrmB PF01978.19 gi|433593539|ref|YP_007296280.1| - 0.00032 20.5 0.0 0.00052 19.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|433593539|ref|YP_007296280.1| - 0.0023 18.4 0.2 0.022 15.3 0.1 2.1 1 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|433593539|ref|YP_007296280.1| - 0.0098 15.4 0.1 0.02 14.5 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Cdc6_C PF09079.11 gi|433593539|ref|YP_007296280.1| - 0.014 15.4 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_20 PF12840.7 gi|433593539|ref|YP_007296280.1| - 0.051 13.6 0.2 0.079 13.0 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|433593539|ref|YP_007296280.1| - 0.079 12.9 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family OrfB_Zn_ribbon PF07282.11 gi|433593540|ref|YP_007296281.1| - 8.3e-24 83.3 1.4 1.5e-23 82.5 1.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|433593540|ref|YP_007296281.1| - 3.5e-19 69.2 0.0 8.5e-19 68.0 0.0 1.6 1 0 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|433593540|ref|YP_007296281.1| - 0.011 16.0 1.2 0.03 14.6 1.2 1.7 1 0 0 1 1 1 0 C1 domain Ribosomal_L37ae PF01780.19 gi|433593540|ref|YP_007296281.1| - 0.046 13.8 2.6 0.38 10.9 0.6 2.5 2 0 0 2 2 2 0 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|433593540|ref|YP_007296281.1| - 0.14 12.2 3.5 0.29 11.2 3.5 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DDE_3 PF13358.6 gi|433593541|ref|YP_007296282.1| - 1.6e-14 53.9 0.0 1.5e-13 50.8 0.0 2.1 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|433593541|ref|YP_007296282.1| - 2.3e-11 44.1 0.3 9.4e-11 42.2 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|433593541|ref|YP_007296282.1| - 4.4e-10 39.4 0.0 1.4e-09 37.9 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|433593541|ref|YP_007296282.1| - 6.7e-09 35.3 0.0 1.5e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|433593541|ref|YP_007296282.1| - 1.2e-05 24.8 0.0 8.6e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|433593541|ref|YP_007296282.1| - 2.7e-05 24.2 0.0 6.8e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|433593541|ref|YP_007296282.1| - 0.0018 18.3 0.1 0.0041 17.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|433593541|ref|YP_007296282.1| - 0.0023 17.4 0.0 0.0074 15.8 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 DDE_1 PF03184.19 gi|433593541|ref|YP_007296282.1| - 0.0027 17.4 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF746 PF05344.11 gi|433593541|ref|YP_007296282.1| - 0.016 15.1 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.6 gi|433593541|ref|YP_007296282.1| - 0.041 14.4 0.0 0.091 13.3 0.0 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Sigma70_r4_2 PF08281.12 gi|433593541|ref|YP_007296282.1| - 0.058 13.1 0.1 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 rve PF00665.26 gi|433593541|ref|YP_007296282.1| - 0.064 13.5 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain MacB_PCD PF12704.7 gi|433593542|ref|YP_007296283.1| - 5.6e-19 69.3 5.9 5.6e-19 69.3 5.9 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|433593542|ref|YP_007296283.1| - 5.6e-08 33.1 7.4 1.1e-07 32.2 1.4 3.0 3 0 0 3 3 3 1 FtsX-like permease family DUF4064 PF13273.6 gi|433593542|ref|YP_007296283.1| - 0.83 10.0 7.1 2.5 8.4 1.4 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) FtsX PF02687.21 gi|433593543|ref|YP_007296284.1| - 1.3e-05 25.5 6.3 1.3e-05 25.5 6.3 3.1 3 0 0 3 3 3 2 FtsX-like permease family ABC_tran PF00005.27 gi|433593544|ref|YP_007296285.1| - 4.3e-34 118.0 0.0 5.7e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|433593544|ref|YP_007296285.1| - 8e-05 22.2 0.1 0.019 14.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|433593544|ref|YP_007296285.1| - 0.00034 20.5 0.4 0.085 12.6 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|433593544|ref|YP_007296285.1| - 0.0015 18.2 0.2 0.0029 17.3 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|433593544|ref|YP_007296285.1| - 0.004 16.9 3.7 0.02 14.6 3.7 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|433593544|ref|YP_007296285.1| - 0.0075 16.7 1.1 0.014 15.8 1.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|433593544|ref|YP_007296285.1| - 0.046 13.6 0.1 0.078 12.9 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase MeaB PF03308.16 gi|433593544|ref|YP_007296285.1| - 0.056 12.4 2.5 0.09 11.7 2.5 1.5 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB IstB_IS21 PF01695.17 gi|433593544|ref|YP_007296285.1| - 0.058 13.1 0.1 0.23 11.2 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|433593544|ref|YP_007296285.1| - 0.088 13.0 0.4 0.17 12.0 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|433593544|ref|YP_007296285.1| - 0.23 11.7 1.0 1.9 8.8 1.0 2.1 1 1 0 1 1 1 0 AAA domain YdjM PF04307.14 gi|433593545|ref|YP_007296286.1| - 1.9e-13 50.1 6.5 2.4e-13 49.7 6.5 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|433593545|ref|YP_007296286.1| - 0.086 12.8 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Zinc dependent phospholipase C DUF4184 PF13803.6 gi|433593545|ref|YP_007296286.1| - 1 9.0 4.0 1.8 8.2 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4184) DUF2070 PF09843.9 gi|433593546|ref|YP_007296287.1| - 0.12 10.6 3.5 0.13 10.5 3.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2530 PF10745.9 gi|433593546|ref|YP_007296287.1| - 4.5 7.6 9.8 0.92 9.8 3.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) YbgT_YccB PF08173.11 gi|433593546|ref|YP_007296287.1| - 7.2 6.8 9.7 1 9.5 1.7 2.6 2 1 0 2 2 2 0 Membrane bound YbgT-like protein DUF4350 PF14258.6 gi|433593547|ref|YP_007296288.1| - 6.2e-08 33.0 0.1 6.2e-08 33.0 0.1 2.6 3 1 0 3 3 3 1 Domain of unknown function (DUF4350) ThuA PF06283.11 gi|433593547|ref|YP_007296288.1| - 0.0018 18.5 0.1 0.0035 17.6 0.1 1.4 1 0 0 1 1 1 1 Trehalose utilisation ABC_transp_aux PF09822.9 gi|433593547|ref|YP_007296288.1| - 0.17 11.3 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 ABC-type uncharacterized transport system AAA_3 PF07726.11 gi|433593548|ref|YP_007296289.1| - 1e-60 203.4 0.1 1.6e-60 202.7 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|433593548|ref|YP_007296289.1| - 1.2e-20 73.1 2.6 2.9e-20 71.9 2.6 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|433593548|ref|YP_007296289.1| - 9.8e-17 61.2 0.0 2e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|433593548|ref|YP_007296289.1| - 7.2e-05 22.6 0.1 0.00063 19.5 0.0 2.4 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|433593548|ref|YP_007296289.1| - 0.00011 21.4 0.0 0.00018 20.7 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|433593548|ref|YP_007296289.1| - 0.00028 21.3 0.0 0.00088 19.7 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|433593548|ref|YP_007296289.1| - 0.00047 19.6 0.1 0.44 9.9 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|433593548|ref|YP_007296289.1| - 0.0012 18.5 0.0 0.012 15.3 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|433593548|ref|YP_007296289.1| - 0.061 13.7 0.2 0.19 12.1 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|433593548|ref|YP_007296289.1| - 0.12 12.7 0.0 0.38 11.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain Big_3_5 PF16640.5 gi|433593549|ref|YP_007296290.1| - 0.0029 17.7 8.7 0.0029 17.7 8.7 3.4 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) DUF4455 PF14643.6 gi|433593549|ref|YP_007296290.1| - 0.0087 14.8 0.8 0.016 13.9 0.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4455) Cep57_MT_bd PF06657.13 gi|433593549|ref|YP_007296290.1| - 0.016 15.7 0.6 0.044 14.2 0.6 1.8 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 CooC_C PF15976.5 gi|433593549|ref|YP_007296290.1| - 0.022 14.8 0.0 0.097 12.7 0.0 2.2 1 0 0 1 1 1 0 CS1-pili formation C-terminal DUF2203 PF09969.9 gi|433593549|ref|YP_007296290.1| - 0.023 15.4 3.6 0.029 15.1 1.6 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF4407 PF14362.6 gi|433593549|ref|YP_007296290.1| - 0.025 14.0 5.7 0.054 12.8 5.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HOIP-UBA PF16678.5 gi|433593549|ref|YP_007296290.1| - 0.07 13.1 0.8 0.15 12.1 0.4 1.7 2 0 0 2 2 2 0 HOIP UBA domain pair CarbopepD_reg_2 PF13715.6 gi|433593549|ref|YP_007296290.1| - 0.19 11.7 0.0 0.19 11.7 0.0 3.7 5 0 0 5 5 5 0 CarboxypepD_reg-like domain DUF5082 PF16888.5 gi|433593549|ref|YP_007296290.1| - 0.26 11.6 2.7 0.71 10.2 2.7 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) Y1_Tnp PF01797.16 gi|433593550|ref|YP_007296291.1| - 2.4e-34 118.1 0.1 2.7e-34 117.9 0.1 1.0 1 0 0 1 1 1 1 Transposase IS200 like DUF4965 PF16335.5 gi|433593550|ref|YP_007296291.1| - 0.088 12.5 0.0 0.098 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4965) DUF3638 PF12340.8 gi|433593550|ref|YP_007296291.1| - 0.17 11.2 0.0 0.23 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3638) OrfB_Zn_ribbon PF07282.11 gi|433593551|ref|YP_007296292.1| - 2.7e-23 81.7 0.7 5.3e-23 80.7 0.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF1616 PF07760.11 gi|433593552|ref|YP_007296293.1| - 1.7e-120 401.8 0.5 2.6e-99 332.3 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1616) FSA_C PF10479.9 gi|433593552|ref|YP_007296293.1| - 2.3 6.3 5.3 3.1 5.8 5.3 1.1 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus DDE_Tnp_1 PF01609.21 gi|433593554|ref|YP_007296295.1| - 1.9e-29 102.9 0.2 2.4e-29 102.5 0.2 1.1 1 0 0 1 1 1 1 Transposase DDE domain Corona_3 PF04694.12 gi|433593554|ref|YP_007296295.1| - 0.0056 17.0 0.0 0.018 15.3 0.0 1.8 1 0 0 1 1 1 1 Coronavirus ORF3 protein DDE_Tnp_1_4 PF13701.6 gi|433593554|ref|YP_007296295.1| - 0.087 11.1 0.0 0.12 10.6 0.0 1.3 1 0 0 1 1 1 0 Transposase DDE domain group 1 Glycos_transf_2 PF00535.26 gi|433593555|ref|YP_007296296.1| - 1.4e-23 83.6 0.0 1.9e-23 83.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|433593555|ref|YP_007296296.1| - 0.003 17.5 0.0 0.0042 17.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|433593555|ref|YP_007296296.1| - 0.062 13.6 0.0 0.17 12.3 0.0 1.7 1 1 1 2 2 2 0 MobA-like NTP transferase domain Glyco_transf_21 PF13506.6 gi|433593555|ref|YP_007296296.1| - 0.076 12.5 0.0 0.29 10.6 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase family 21 PEP_hydrolase PF09370.10 gi|433593555|ref|YP_007296296.1| - 0.1 11.8 0.2 0.18 11.0 0.2 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like Glyco_tranf_2_4 PF13704.6 gi|433593555|ref|YP_007296296.1| - 0.15 12.6 0.0 0.36 11.4 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 2 DDE_Tnp_1 PF01609.21 gi|433593556|ref|YP_007296297.1| - 5.1e-11 42.6 0.0 6.6e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|433593556|ref|YP_007296297.1| - 0.043 12.1 0.1 0.17 10.1 0.1 1.8 1 1 0 1 1 1 0 Transposase DDE domain group 1 Epimerase PF01370.21 gi|433593558|ref|YP_007296299.1| - 1e-43 149.6 0.7 1.2e-43 149.3 0.7 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|433593558|ref|YP_007296299.1| - 7.3e-39 134.1 0.8 6.3e-38 131.0 0.8 2.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|433593558|ref|YP_007296299.1| - 1.3e-12 47.4 0.2 1.6e-12 47.1 0.2 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|433593558|ref|YP_007296299.1| - 6.3e-11 41.8 0.0 1.1e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|433593558|ref|YP_007296299.1| - 4.9e-10 39.0 0.8 3.8e-08 32.8 0.8 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|433593558|ref|YP_007296299.1| - 1.8e-07 30.6 0.3 4.7e-05 22.7 0.1 2.3 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|433593558|ref|YP_007296299.1| - 0.0069 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|433593558|ref|YP_007296299.1| - 0.01 15.7 0.1 0.74 9.7 0.0 2.3 2 0 0 2 2 2 0 KR domain adh_short PF00106.25 gi|433593558|ref|YP_007296299.1| - 0.089 12.2 0.3 0.52 9.7 0.0 2.3 1 1 1 2 2 2 0 short chain dehydrogenase Prok-RING_1 PF14446.6 gi|433593559|ref|YP_007296300.1| - 0.13 12.2 2.8 0.26 11.2 2.8 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DDE_Tnp_1 PF01609.21 gi|433593560|ref|YP_007296301.1| - 1.5e-18 67.2 0.0 2.1e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593560|ref|YP_007296301.1| - 0.0012 18.8 0.0 0.0026 17.7 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) Epimerase PF01370.21 gi|433593561|ref|YP_007296302.1| - 4.9e-51 173.5 0.0 5.9e-51 173.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|433593561|ref|YP_007296302.1| - 2.4e-43 148.8 0.0 6.3e-43 147.4 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|433593561|ref|YP_007296302.1| - 4.8e-17 62.0 0.0 5.5e-16 58.5 0.0 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|433593561|ref|YP_007296302.1| - 5.2e-17 61.9 0.0 6.8e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|433593561|ref|YP_007296302.1| - 3.3e-13 49.3 0.0 4.4e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|433593561|ref|YP_007296302.1| - 1.5e-11 43.9 0.0 1.6e-06 27.5 0.0 2.8 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|433593561|ref|YP_007296302.1| - 2.5e-10 40.6 0.0 3.6e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|433593561|ref|YP_007296302.1| - 4.5e-06 26.4 0.0 0.0018 17.9 0.0 2.1 2 0 0 2 2 2 2 NmrA-like family TrkA_N PF02254.18 gi|433593561|ref|YP_007296302.1| - 3.7e-05 23.9 0.1 7.8e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain adh_short PF00106.25 gi|433593561|ref|YP_007296302.1| - 8.6e-05 22.1 0.0 0.016 14.7 0.0 2.3 2 0 0 2 2 2 2 short chain dehydrogenase NUDIX PF00293.28 gi|433593562|ref|YP_007296303.1| - 3.7e-12 46.4 0.8 3.9e-12 46.4 0.2 1.3 2 0 0 2 2 2 1 NUDIX domain Augurin PF15187.6 gi|433593562|ref|YP_007296303.1| - 0.12 12.6 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Oesophageal cancer-related gene 4 NTP_transferase PF00483.23 gi|433593563|ref|YP_007296304.1| - 2.6e-37 128.7 0.0 3.4e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|433593563|ref|YP_007296304.1| - 7.4e-10 39.4 0.0 1e-09 39.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|433593563|ref|YP_007296304.1| - 0.0073 16.0 0.3 0.086 12.6 0.0 2.7 2 1 0 2 2 2 1 Bacterial transferase hexapeptide (six repeats) Pentapeptide_3 PF13576.6 gi|433593563|ref|YP_007296304.1| - 0.014 15.6 0.2 0.36 11.0 0.0 2.9 3 0 0 3 3 3 0 Pentapeptide repeats (9 copies) NUDIX PF00293.28 gi|433593564|ref|YP_007296305.1| - 3.8e-11 43.2 0.1 4.6e-11 42.9 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain GDP_Man_Dehyd PF16363.5 gi|433593565|ref|YP_007296306.1| - 9.5e-81 271.8 0.0 1.1e-80 271.6 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|433593565|ref|YP_007296306.1| - 2.5e-66 223.6 0.0 3.1e-66 223.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|433593565|ref|YP_007296306.1| - 1.3e-24 86.7 0.0 1.8e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|433593565|ref|YP_007296306.1| - 1.2e-20 73.9 0.0 2e-19 69.8 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|433593565|ref|YP_007296306.1| - 7.6e-20 71.2 0.0 9.9e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|433593565|ref|YP_007296306.1| - 9e-16 57.8 0.0 1.4e-14 53.9 0.0 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|433593565|ref|YP_007296306.1| - 5.3e-12 46.0 0.0 8.3e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|433593565|ref|YP_007296306.1| - 3.5e-05 23.5 0.1 5.8e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|433593565|ref|YP_007296306.1| - 0.00058 19.4 0.0 0.0075 15.8 0.0 2.5 2 1 0 2 2 2 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|433593565|ref|YP_007296306.1| - 0.0045 17.2 0.1 0.01 16.1 0.1 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|433593565|ref|YP_007296306.1| - 0.06 13.3 0.0 0.22 11.4 0.0 1.9 1 1 0 1 1 1 0 KR domain Ldh_1_N PF00056.23 gi|433593565|ref|YP_007296306.1| - 0.16 12.1 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DDE_Tnp_IS1595 PF12762.7 gi|433593566|ref|YP_007296307.1| - 3.6e-21 75.8 0.0 5.6e-21 75.1 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|433593566|ref|YP_007296307.1| - 1.1e-08 34.9 3.6 2.2e-08 33.9 3.6 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|433593566|ref|YP_007296307.1| - 0.0003 20.5 4.5 0.0003 20.5 4.5 1.9 2 0 0 2 2 2 1 InsA N-terminal domain DUF2089 PF09862.9 gi|433593566|ref|YP_007296307.1| - 0.0022 18.0 0.1 0.004 17.2 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2089) CoiA PF06054.11 gi|433593566|ref|YP_007296307.1| - 0.048 12.8 0.1 0.075 12.2 0.1 1.4 1 0 0 1 1 1 0 Competence protein CoiA-like family Lar_restr_allev PF14354.6 gi|433593566|ref|YP_007296307.1| - 0.077 13.4 0.7 0.16 12.3 0.7 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar RHH_6 PF16762.5 gi|433593567|ref|YP_007296308.1| - 0.00029 21.4 1.8 0.064 13.9 1.8 2.4 1 1 0 1 1 1 1 Ribbon-helix-helix domain RHH_8 PF17723.1 gi|433593567|ref|YP_007296308.1| - 0.0012 19.1 0.1 0.0018 18.4 0.1 1.5 1 1 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family NYD-SP28 PF14772.6 gi|433593567|ref|YP_007296308.1| - 0.057 13.5 4.1 0.069 13.2 3.2 1.6 1 1 1 2 2 2 0 Sperm tail HhH-GPD PF00730.25 gi|433593567|ref|YP_007296308.1| - 0.13 12.7 0.0 0.19 12.2 0.0 1.4 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein FUSC PF04632.12 gi|433593567|ref|YP_007296308.1| - 2.3 6.6 4.6 2.7 6.4 4.6 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family MarR_2 PF12802.7 gi|433593568|ref|YP_007296309.1| - 1.1e-05 25.2 0.0 1.8e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|433593568|ref|YP_007296309.1| - 0.00044 20.5 0.0 0.00077 19.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|433593568|ref|YP_007296309.1| - 0.0018 18.2 0.0 0.0028 17.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|433593568|ref|YP_007296309.1| - 0.002 18.0 0.0 0.0035 17.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|433593568|ref|YP_007296309.1| - 0.01 15.7 0.1 0.017 15.0 0.1 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_24 PF13412.6 gi|433593568|ref|YP_007296309.1| - 0.015 14.8 0.1 0.029 13.9 0.1 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|433593568|ref|YP_007296309.1| - 0.021 14.8 0.0 0.048 13.6 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|433593568|ref|YP_007296309.1| - 0.022 14.6 0.0 0.036 13.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|433593568|ref|YP_007296309.1| - 0.022 14.7 0.1 0.046 13.8 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.12 gi|433593568|ref|YP_007296309.1| - 0.027 14.4 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 gi|433593568|ref|YP_007296309.1| - 0.028 14.9 0.1 0.046 14.2 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|433593568|ref|YP_007296309.1| - 0.031 14.5 0.0 0.057 13.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.12 gi|433593568|ref|YP_007296309.1| - 0.04 14.1 0.3 0.1 12.8 0.3 1.7 1 1 0 1 1 1 0 PaaX-like protein MarR PF01047.22 gi|433593568|ref|YP_007296309.1| - 0.052 13.5 0.0 0.093 12.7 0.0 1.4 1 0 0 1 1 1 0 MarR family DprA_WH PF17782.1 gi|433593568|ref|YP_007296309.1| - 0.08 13.1 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 DprA winged helix domain Glyco_tranf_2_4 PF13704.6 gi|433593568|ref|YP_007296309.1| - 0.5 10.9 7.0 1.3 9.5 1.7 2.9 1 1 0 2 2 2 0 Glycosyl transferase family 2 UPF0175 PF03683.13 gi|433593569|ref|YP_007296310.1| - 2.4e-09 36.8 0.4 2.4e-09 36.8 0.4 1.7 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) GYF_2 PF14237.6 gi|433593569|ref|YP_007296310.1| - 0.14 12.0 0.6 0.64 9.9 0.1 2.2 1 1 1 2 2 2 0 GYF domain 2 RHH_1 PF01402.21 gi|433593569|ref|YP_007296310.1| - 0.6 10.1 6.5 0.15 12.0 0.9 2.6 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family OrfB_Zn_ribbon PF07282.11 gi|433593570|ref|YP_007296311.1| - 4.9e-23 80.8 0.3 9.5e-23 79.9 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|433593570|ref|YP_007296311.1| - 7.1e-06 26.2 0.3 1.7e-05 25.0 0.0 1.7 2 0 0 2 2 2 1 Probable transposase HTH_20 PF12840.7 gi|433593571|ref|YP_007296312.1| - 1.1e-12 47.9 0.1 1.6e-12 47.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|433593571|ref|YP_007296312.1| - 4.1e-06 26.6 0.1 7.6e-06 25.7 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|433593571|ref|YP_007296312.1| - 3.3e-05 24.3 0.0 5.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|433593571|ref|YP_007296312.1| - 0.00015 21.6 0.0 0.00025 20.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|433593571|ref|YP_007296312.1| - 0.00016 21.4 0.0 0.0002 21.2 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_34 PF13601.6 gi|433593571|ref|YP_007296312.1| - 0.00017 21.7 0.0 0.00025 21.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|433593571|ref|YP_007296312.1| - 0.00054 19.8 0.0 0.00099 19.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|433593571|ref|YP_007296312.1| - 0.0042 16.9 0.0 0.007 16.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.12 gi|433593571|ref|YP_007296312.1| - 0.012 15.8 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|433593571|ref|YP_007296312.1| - 0.016 14.8 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_micro PF17007.5 gi|433593571|ref|YP_007296312.1| - 0.044 12.6 0.0 0.044 12.6 0.0 1.0 1 0 0 1 1 1 0 HTH-like DUF2513 PF10711.9 gi|433593571|ref|YP_007296312.1| - 0.17 12.2 0.0 0.22 11.9 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HEAT_2 PF13646.6 gi|433593573|ref|YP_007296314.1| - 0.00039 20.7 3.2 0.002 18.4 2.0 2.4 2 1 0 2 2 2 1 HEAT repeats HEAT PF02985.22 gi|433593573|ref|YP_007296314.1| - 0.0023 18.1 0.5 0.01 16.0 0.1 2.4 3 0 0 3 3 3 1 HEAT repeat HCMV_UL139 PF12507.8 gi|433593573|ref|YP_007296314.1| - 0.016 15.6 0.3 0.03 14.7 0.3 1.4 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein Cnd1 PF12717.7 gi|433593573|ref|YP_007296314.1| - 0.019 15.0 0.1 0.03 14.4 0.1 1.3 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|433593573|ref|YP_007296314.1| - 0.11 13.1 0.3 4.7 7.8 0.2 2.9 2 1 1 3 3 3 0 HEAT-like repeat FlgN PF05130.12 gi|433593573|ref|YP_007296314.1| - 0.15 12.6 3.9 0.44 11.0 2.1 2.2 2 1 0 2 2 2 0 FlgN protein CBM_X2 PF03442.14 gi|433593574|ref|YP_007296315.1| - 0.015 15.4 0.0 0.019 15.1 0.0 1.1 1 0 0 1 1 1 0 Carbohydrate binding domain X2 SWIM PF04434.17 gi|433593576|ref|YP_007296317.1| - 1.4e-08 34.2 0.4 2.7e-08 33.3 0.4 1.4 1 0 0 1 1 1 1 SWIM zinc finger Cut8 PF08559.10 gi|433593576|ref|YP_007296317.1| - 0.034 13.7 0.0 0.068 12.8 0.0 1.4 1 0 0 1 1 1 0 Cut8, nuclear proteasome tether protein TPR_12 PF13424.6 gi|433593576|ref|YP_007296317.1| - 8.6 6.7 16.2 25 5.2 0.6 5.1 5 0 0 5 5 5 0 Tetratricopeptide repeat PRiA4_ORF3 PF07929.11 gi|433593577|ref|YP_007296318.1| - 0.00076 19.2 0.2 0.0013 18.5 0.0 1.5 2 0 0 2 2 2 1 Plasmid pRiA4b ORF-3-like protein MarR_2 PF12802.7 gi|433593578|ref|YP_007296319.1| - 1e-06 28.5 0.0 1.6e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|433593578|ref|YP_007296319.1| - 2.2e-05 24.3 0.0 2.4e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|433593578|ref|YP_007296319.1| - 0.00013 21.8 0.0 0.00022 21.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|433593578|ref|YP_007296319.1| - 0.00082 18.9 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|433593578|ref|YP_007296319.1| - 0.00085 19.2 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|433593578|ref|YP_007296319.1| - 0.0022 18.0 0.0 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|433593578|ref|YP_007296319.1| - 0.003 17.5 0.0 0.0035 17.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|433593578|ref|YP_007296319.1| - 0.004 17.2 0.0 0.0075 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix LacI PF00356.21 gi|433593578|ref|YP_007296319.1| - 0.0073 16.1 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_45 PF14947.6 gi|433593578|ref|YP_007296319.1| - 0.0077 16.2 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.22 gi|433593578|ref|YP_007296319.1| - 0.016 15.2 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 MarR family GntR PF00392.21 gi|433593578|ref|YP_007296319.1| - 0.022 14.4 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4423 PF14394.6 gi|433593578|ref|YP_007296319.1| - 0.031 14.0 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_IclR PF09339.10 gi|433593578|ref|YP_007296319.1| - 0.033 14.0 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF1323 PF07037.11 gi|433593578|ref|YP_007296319.1| - 0.037 14.4 0.0 0.084 13.3 0.0 1.6 1 1 1 2 2 2 0 Putative transcription regulator (DUF1323) HTH_27 PF13463.6 gi|433593578|ref|YP_007296319.1| - 0.065 13.7 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain YdaS_antitoxin PF15943.5 gi|433593578|ref|YP_007296319.1| - 0.07 13.0 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 gi|433593578|ref|YP_007296319.1| - 0.086 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Phage_CI_repr PF07022.13 gi|433593578|ref|YP_007296319.1| - 0.11 12.6 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_29 PF13551.6 gi|433593578|ref|YP_007296319.1| - 0.12 12.4 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_5 PF01022.20 gi|433593578|ref|YP_007296319.1| - 0.17 11.8 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GST_C_6 PF17171.4 gi|433593579|ref|YP_007296320.1| - 0.0025 17.6 0.0 0.0038 17.0 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain DUF2080 PF09853.9 gi|433593580|ref|YP_007296321.1| - 6.8e-05 22.5 0.0 8e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) OrfB_Zn_ribbon PF07282.11 gi|433593581|ref|YP_007296322.1| - 2.4e-18 65.8 0.1 6.1e-18 64.5 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-Di19 PF05605.12 gi|433593581|ref|YP_007296322.1| - 0.0051 17.1 5.0 0.0051 17.1 5.0 2.0 2 0 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding OrfB_IS605 PF01385.19 gi|433593581|ref|YP_007296322.1| - 0.0068 16.6 1.0 0.0068 16.6 1.0 2.4 2 1 0 2 2 2 1 Probable transposase zf-NADH-PPase PF09297.11 gi|433593581|ref|YP_007296322.1| - 0.085 12.5 0.4 0.085 12.5 0.4 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.6 gi|433593581|ref|YP_007296322.1| - 0.093 13.1 1.9 0.32 11.4 1.9 1.9 1 0 0 1 1 1 0 Restriction alleviation protein Lar EzrA PF06160.12 gi|433593581|ref|YP_007296322.1| - 0.17 10.0 0.4 0.28 9.3 0.4 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA zf_CopZ PF18423.1 gi|433593581|ref|YP_007296322.1| - 0.31 11.0 3.7 0.36 10.8 0.7 2.4 2 0 0 2 2 2 0 Zinc binding domain DZR PF12773.7 gi|433593581|ref|YP_007296322.1| - 0.87 9.7 5.4 0.31 11.1 2.3 1.8 2 0 0 2 2 2 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|433593581|ref|YP_007296322.1| - 1.2 9.2 9.7 11 6.1 8.3 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DDE_Tnp_1 PF01609.21 gi|433593582|ref|YP_007296323.1| - 2.9e-22 79.4 0.0 7.6e-22 78.0 0.0 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593582|ref|YP_007296323.1| - 7.8e-07 29.0 0.0 2.1e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_4 PF13359.6 gi|433593582|ref|YP_007296323.1| - 0.00014 21.6 0.0 0.57 9.8 0.0 2.3 2 0 0 2 2 2 2 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.6 gi|433593582|ref|YP_007296323.1| - 0.0012 18.9 0.0 0.0044 17.0 0.0 1.9 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|433593582|ref|YP_007296323.1| - 0.0024 18.1 0.2 0.0048 17.1 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|433593583|ref|YP_007296324.1| - 3.2e-10 40.0 3.3 4.9e-10 39.4 3.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|433593583|ref|YP_007296324.1| - 0.17 11.9 0.5 0.48 10.5 0.3 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/all.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/all.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/all.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Natrinema_pellirubrum_DSM_15624_uid74437/all.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:26:04 2019 # [ok]