# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|304313779|ref|YP_003848926.1| - 2.7e-17 62.5 0.5 7.2e-17 61.1 0.5 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|304313779|ref|YP_003848926.1| - 8.5e-11 42.3 0.0 1.7e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|304313779|ref|YP_003848926.1| - 5.6e-09 36.6 0.0 2.1e-08 34.7 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|304313779|ref|YP_003848926.1| - 6.9e-07 29.8 0.0 1.3e-06 28.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|304313779|ref|YP_003848926.1| - 0.00093 18.7 0.0 0.0018 17.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein NB-ARC PF00931.22 gi|304313779|ref|YP_003848926.1| - 0.0031 16.7 0.0 0.0076 15.5 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain ResIII PF04851.15 gi|304313779|ref|YP_003848926.1| - 0.008 16.2 0.0 0.032 14.2 0.0 2.0 2 0 0 2 2 1 1 Type III restriction enzyme, res subunit E2F_TDP PF02319.20 gi|304313779|ref|YP_003848926.1| - 0.013 15.5 0.1 0.056 13.5 0.1 2.0 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain AAA_5 PF07728.14 gi|304313779|ref|YP_003848926.1| - 0.014 15.4 0.0 0.033 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|304313779|ref|YP_003848926.1| - 0.041 13.8 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|304313779|ref|YP_003848926.1| - 0.063 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|304313779|ref|YP_003848926.1| - 0.065 13.8 0.0 0.16 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|304313779|ref|YP_003848926.1| - 0.069 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|304313779|ref|YP_003848926.1| - 0.083 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF87 PF01935.17 gi|304313779|ref|YP_003848926.1| - 0.1 12.7 1.2 18 5.3 0.5 3.1 2 1 0 3 3 3 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|304313779|ref|YP_003848926.1| - 0.11 12.2 0.8 0.3 10.8 0.8 1.8 1 1 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|304313779|ref|YP_003848926.1| - 0.11 11.6 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TsaE PF02367.17 gi|304313779|ref|YP_003848926.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TrwB_AAD_bind PF10412.9 gi|304313779|ref|YP_003848926.1| - 0.16 10.9 0.0 3.7 6.4 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Torsin PF06309.11 gi|304313779|ref|YP_003848926.1| - 0.17 12.0 0.0 0.47 10.5 0.0 1.7 2 0 0 2 2 2 0 Torsin DEAD PF00270.29 gi|304313779|ref|YP_003848926.1| - 0.25 11.1 3.2 2.4 7.9 0.5 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase OTCace_N PF02729.21 gi|304313780|ref|YP_003848927.1| - 3.4e-46 157.0 0.0 8.5e-46 155.6 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|304313780|ref|YP_003848927.1| - 9.5e-30 103.8 0.0 1.4e-29 103.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GCD14 PF08704.10 gi|304313781|ref|YP_003848928.1| - 1e-31 110.5 0.0 8.1e-29 101.0 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|304313781|ref|YP_003848928.1| - 7.9e-10 38.7 0.0 1e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|304313781|ref|YP_003848928.1| - 8.2e-10 38.8 0.0 1.1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|304313781|ref|YP_003848928.1| - 8.7e-07 29.6 0.0 1.4e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|304313781|ref|YP_003848928.1| - 8.4e-06 25.4 0.0 1.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|304313781|ref|YP_003848928.1| - 3.3e-05 23.3 0.1 5.7e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|304313781|ref|YP_003848928.1| - 0.00039 20.1 0.0 0.00062 19.5 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_11 PF08241.12 gi|304313781|ref|YP_003848928.1| - 0.00084 19.9 0.0 0.0014 19.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|304313781|ref|YP_003848928.1| - 0.00096 19.1 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|304313781|ref|YP_003848928.1| - 0.0013 17.9 0.0 0.0018 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|304313781|ref|YP_003848928.1| - 0.0031 17.0 0.0 0.0051 16.3 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_12 PF08242.12 gi|304313781|ref|YP_003848928.1| - 0.0069 17.1 0.0 0.011 16.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|304313781|ref|YP_003848928.1| - 0.0086 15.3 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_32 PF13679.6 gi|304313781|ref|YP_003848928.1| - 0.016 15.2 0.0 0.025 14.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|304313781|ref|YP_003848928.1| - 0.11 13.6 0.0 0.23 12.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|304313781|ref|YP_003848928.1| - 0.14 11.7 0.1 0.27 10.8 0.1 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW ERCC4 PF02732.15 gi|304313782|ref|YP_003848929.1| - 2.8e-27 95.8 0.0 1.1e-26 93.9 0.0 2.0 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|304313782|ref|YP_003848929.1| - 2e-26 92.5 0.1 1.8e-25 89.4 0.2 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|304313782|ref|YP_003848929.1| - 5.1e-18 65.5 0.0 1.9e-17 63.6 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|304313782|ref|YP_003848929.1| - 3.4e-16 59.7 0.0 7.6e-16 58.6 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|304313782|ref|YP_003848929.1| - 5.7e-12 45.5 0.1 1.4e-11 44.3 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|304313782|ref|YP_003848929.1| - 4.6e-11 43.1 0.9 2.9e-10 40.6 0.1 2.8 3 0 0 3 3 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|304313782|ref|YP_003848929.1| - 0.00034 20.3 0.1 0.001 18.8 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif PhoH PF02562.16 gi|304313782|ref|YP_003848929.1| - 0.0092 15.4 0.3 0.038 13.5 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein SWI2_SNF2 PF18766.1 gi|304313782|ref|YP_003848929.1| - 0.011 15.4 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 SWI2/SNF2 ATPase 5_3_exonuc PF01367.20 gi|304313782|ref|YP_003848929.1| - 0.027 15.1 0.1 0.13 12.9 0.0 2.2 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.6 gi|304313782|ref|YP_003848929.1| - 0.058 13.8 0.2 2.8 8.4 0.1 3.3 3 1 0 3 3 3 0 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|304313782|ref|YP_003848929.1| - 0.09 13.1 0.0 1.4 9.2 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif BKACE PF05853.12 gi|304313782|ref|YP_003848929.1| - 0.094 12.0 0.0 0.6 9.4 0.0 2.2 2 0 0 2 2 2 0 beta-keto acid cleavage enzyme RNA_pol_A_CTD PF03118.15 gi|304313782|ref|YP_003848929.1| - 0.2 11.4 1.5 0.58 10.0 0.1 2.3 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain DUF5400 PF17379.2 gi|304313783|ref|YP_003848930.1| - 9.1e-38 128.8 8.3 1e-37 128.6 8.3 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5400) DrsE PF02635.15 gi|304313784|ref|YP_003848931.1| - 2.1e-23 82.9 0.1 3.6e-23 82.2 0.1 1.4 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|304313784|ref|YP_003848931.1| - 8.7e-12 45.2 5.9 1.8e-06 27.9 0.3 2.7 2 1 1 3 3 3 2 DsrE/DsrF/DrsH-like family TusA PF01206.17 gi|304313784|ref|YP_003848931.1| - 3.7e-09 36.3 0.1 1.2e-08 34.6 0.1 2.0 2 1 0 2 2 2 1 Sulfurtransferase TusA Pyr_redox PF00070.27 gi|304313784|ref|YP_003848931.1| - 0.014 16.0 0.2 6.4 7.4 0.0 3.2 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase OapA PF04225.12 gi|304313784|ref|YP_003848931.1| - 0.075 13.1 0.1 0.21 11.7 0.1 1.7 1 0 0 1 1 1 0 Opacity-associated protein A LysM-like domain DUF169 PF02596.15 gi|304313785|ref|YP_003848932.1| - 2e-55 187.9 0.0 2.2e-55 187.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 GAF_2 PF13185.6 gi|304313786|ref|YP_003848933.1| - 1.1e-15 58.1 0.0 1e-10 42.1 0.0 2.8 3 0 0 3 3 3 2 GAF domain GAF_3 PF13492.6 gi|304313786|ref|YP_003848933.1| - 2.1e-09 37.8 0.0 1.5e-05 25.3 0.0 2.6 3 0 0 3 3 3 2 GAF domain GAF PF01590.26 gi|304313786|ref|YP_003848933.1| - 2.8e-09 37.7 0.0 0.0001 23.0 0.0 3.0 2 1 0 2 2 2 2 GAF domain Penicillinase_R PF03965.16 gi|304313786|ref|YP_003848933.1| - 0.0087 16.4 0.0 0.033 14.5 0.0 2.0 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|304313786|ref|YP_003848933.1| - 0.018 14.8 0.1 0.25 11.2 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|304313786|ref|YP_003848933.1| - 0.062 13.2 0.1 0.32 10.9 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF521 PF04412.13 gi|304313787|ref|YP_003848934.1| - 1.3e-162 541.1 0.0 1.5e-162 540.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DHHA1 PF02272.19 gi|304313788|ref|YP_003848935.1| - 7.5e-17 62.0 0.0 2.7e-16 60.3 0.0 1.9 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|304313788|ref|YP_003848935.1| - 0.00034 20.8 0.1 0.00061 20.0 0.1 1.3 1 0 0 1 1 1 1 DHH family XylR_N PF06505.11 gi|304313788|ref|YP_003848935.1| - 0.031 14.0 0.0 3.1 7.6 0.0 2.9 2 1 0 2 2 2 0 Activator of aromatic catabolism Ribosomal_S15 PF00312.22 gi|304313789|ref|YP_003848936.1| - 3.6e-18 65.5 0.2 4.6e-18 65.2 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.12 gi|304313789|ref|YP_003848936.1| - 1.3e-15 57.1 0.0 2.9e-15 56.0 0.0 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain HTH_23 PF13384.6 gi|304313789|ref|YP_003848936.1| - 0.041 13.7 0.2 14 5.7 0.0 3.0 3 0 0 3 3 3 0 Homeodomain-like domain Ham1p_like PF01725.16 gi|304313790|ref|YP_003848937.1| - 3.9e-49 167.1 0.0 4.4e-49 167.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Peptidase_M22 PF00814.25 gi|304313791|ref|YP_003848938.1| - 1.9e-93 313.1 0.0 2.5e-93 312.7 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.23 gi|304313791|ref|YP_003848938.1| - 1.3e-08 35.0 0.2 0.0004 20.4 0.5 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|304313791|ref|YP_003848938.1| - 2.1e-08 33.8 0.0 6.8e-08 32.1 0.0 1.9 1 1 1 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 gi|304313791|ref|YP_003848938.1| - 6.5e-08 32.4 0.0 1.1e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|304313791|ref|YP_003848938.1| - 9.4e-07 28.5 0.0 1.4e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|304313791|ref|YP_003848938.1| - 0.002 17.8 0.1 0.0047 16.6 0.1 1.5 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.17 gi|304313791|ref|YP_003848938.1| - 0.0059 15.9 0.0 0.0089 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase SpoIIM PF01944.17 gi|304313793|ref|YP_003848940.1| - 0.3 11.1 23.2 0.7 9.9 23.2 1.6 1 1 0 1 1 1 0 Stage II sporulation protein M BacA PF02673.18 gi|304313794|ref|YP_003848941.1| - 3.8e-86 288.9 12.8 4.4e-86 288.7 12.8 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA TauE PF01925.19 gi|304313794|ref|YP_003848941.1| - 0.00066 19.4 16.5 0.0012 18.5 16.5 1.5 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE Saf_2TM PF18303.1 gi|304313794|ref|YP_003848941.1| - 0.058 13.0 0.0 0.19 11.3 0.0 1.8 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain Aminotran_4 PF01063.19 gi|304313795|ref|YP_003848942.1| - 2.8e-52 177.8 0.0 3.2e-52 177.6 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV BORCS8 PF10167.9 gi|304313795|ref|YP_003848942.1| - 0.073 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 BLOC-1-related complex sub-unit 8 DUF11 PF01345.18 gi|304313796|ref|YP_003848943.1| - 0.00028 21.1 1.1 0.00075 19.7 1.1 1.8 1 1 0 1 1 1 1 Domain of unknown function DUF11 DUF5305 PF17231.2 gi|304313796|ref|YP_003848943.1| - 0.038 13.4 1.1 0.051 13.0 0.1 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5305) Mrr_cat PF04471.12 gi|304313797|ref|YP_003848944.1| - 2.9e-16 59.5 0.3 3.9e-16 59.1 0.3 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|304313797|ref|YP_003848944.1| - 0.00047 20.1 0.1 0.00065 19.6 0.1 1.2 1 0 0 1 1 1 1 Restriction endonuclease GTP-bdg_N PF13167.6 gi|304313797|ref|YP_003848944.1| - 0.0041 17.8 0.1 0.0081 16.8 0.1 1.4 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal SurE PF01975.17 gi|304313798|ref|YP_003848945.1| - 2.8e-56 190.4 0.0 3.3e-56 190.1 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE MASE1 PF05231.14 gi|304313799|ref|YP_003848946.1| - 0.014 14.6 6.9 0.017 14.2 6.9 1.0 1 0 0 1 1 1 0 MASE1 BaxI_1 PF12811.7 gi|304313799|ref|YP_003848946.1| - 0.047 13.2 2.4 0.057 13.0 2.4 1.1 1 0 0 1 1 1 0 Bax inhibitor 1 like DUF4405 PF14358.6 gi|304313799|ref|YP_003848946.1| - 0.19 12.3 9.0 0.33 11.5 9.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4405) DUF5090 PF17009.5 gi|304313799|ref|YP_003848946.1| - 0.84 9.6 3.7 0.97 9.4 3.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5090) CrgA PF06781.12 gi|304313799|ref|YP_003848946.1| - 2.8 8.1 6.0 2.1 8.5 2.0 1.9 1 1 1 2 2 2 0 Cell division protein CrgA DUF4405 PF14358.6 gi|304313800|ref|YP_003848947.1| - 1.9 9.1 8.4 0.7 10.5 5.7 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) HTH_5 PF01022.20 gi|304313801|ref|YP_003848948.1| - 1.8e-09 37.3 0.1 3e-09 36.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|304313801|ref|YP_003848948.1| - 2.2e-06 27.6 0.0 3.6e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|304313801|ref|YP_003848948.1| - 0.0015 18.5 0.0 0.0021 18.0 0.0 1.3 1 1 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) AAT PF03417.16 gi|304313801|ref|YP_003848948.1| - 0.0015 18.3 0.1 0.0029 17.3 0.1 1.5 1 1 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase HTH_24 PF13412.6 gi|304313801|ref|YP_003848948.1| - 0.0067 16.0 0.1 0.012 15.1 0.1 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|304313801|ref|YP_003848948.1| - 0.0084 16.1 0.2 0.014 15.3 0.2 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|304313801|ref|YP_003848948.1| - 0.013 15.4 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|304313801|ref|YP_003848948.1| - 0.014 15.4 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 HTH domain DprA_WH PF17782.1 gi|304313801|ref|YP_003848948.1| - 0.015 15.4 0.0 0.023 14.8 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain HTH_29 PF13551.6 gi|304313801|ref|YP_003848948.1| - 0.016 15.2 0.1 0.046 13.7 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix Glyco_trans_4_5 PF16994.5 gi|304313801|ref|YP_003848948.1| - 0.019 14.6 0.1 0.023 14.3 0.1 1.2 1 0 0 1 1 1 0 Glycosyl-transferase family 4 TrmB PF01978.19 gi|304313801|ref|YP_003848948.1| - 0.022 14.6 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SelB-wing_2 PF09106.11 gi|304313801|ref|YP_003848948.1| - 0.036 14.3 0.6 0.068 13.4 0.0 1.7 2 0 0 2 2 1 0 Elongation factor SelB, winged helix 3-alpha PF03475.14 gi|304313801|ref|YP_003848948.1| - 0.045 13.6 1.1 0.091 12.7 0.3 1.9 2 0 0 2 2 2 0 3-alpha domain DUF4364 PF14277.6 gi|304313801|ref|YP_003848948.1| - 0.051 13.3 0.1 0.067 12.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF4519 PF15012.6 gi|304313802|ref|YP_003848949.1| - 7.1 6.9 5.4 7.2 6.9 1.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) LSM PF01423.22 gi|304313803|ref|YP_003848950.1| - 4.2e-09 36.0 1.3 4.1e-08 32.8 1.3 2.0 1 1 0 1 1 1 1 LSM domain DUF150_C PF17384.2 gi|304313803|ref|YP_003848950.1| - 0.024 14.8 0.2 0.027 14.6 0.2 1.2 1 0 0 1 1 1 0 RimP C-terminal SH3 domain Acetate_kinase PF00871.17 gi|304313804|ref|YP_003848951.1| - 0.031 13.0 0.1 0.068 11.9 0.1 1.4 1 1 0 1 1 1 0 Acetokinase family IlvN PF07991.12 gi|304313805|ref|YP_003848952.1| - 5.4e-73 244.0 0.5 7.5e-73 243.5 0.5 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|304313805|ref|YP_003848952.1| - 1.3e-62 210.3 1.2 2.1e-62 209.6 1.2 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|304313805|ref|YP_003848952.1| - 6.1e-08 33.1 0.2 1.6e-07 31.8 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|304313805|ref|YP_003848952.1| - 5.6e-06 25.8 0.0 1e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|304313805|ref|YP_003848952.1| - 9.1e-06 25.9 0.0 1.8e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|304313805|ref|YP_003848952.1| - 0.00057 20.0 0.1 0.0014 18.8 0.1 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FMO-like PF00743.19 gi|304313805|ref|YP_003848952.1| - 0.068 11.6 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like NAD_Gly3P_dh_N PF01210.23 gi|304313805|ref|YP_003848952.1| - 0.16 11.9 0.4 4.7 7.2 0.1 2.7 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.6 gi|304313805|ref|YP_003848952.1| - 0.17 12.3 0.0 0.75 10.3 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding ALS_ss_C PF10369.9 gi|304313806|ref|YP_003848953.1| - 9.2e-31 105.9 0.4 4.7e-30 103.6 0.1 2.0 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|304313806|ref|YP_003848953.1| - 4.5e-20 71.2 0.2 1.7e-19 69.4 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|304313806|ref|YP_003848953.1| - 3.2e-15 55.6 1.0 4.5e-15 55.1 0.2 1.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|304313806|ref|YP_003848953.1| - 0.001 19.6 0.1 0.0024 18.4 0.1 1.6 1 0 0 1 1 1 1 ACT domain Saccharop_dh_N PF04455.12 gi|304313806|ref|YP_003848953.1| - 0.0057 17.0 0.1 0.11 13.0 0.0 2.2 1 1 2 3 3 3 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_N PF02776.18 gi|304313807|ref|YP_003848954.1| - 1.8e-63 213.2 0.1 9.7e-59 197.8 0.1 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|304313807|ref|YP_003848954.1| - 2.4e-53 179.5 0.0 4.7e-53 178.6 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|304313807|ref|YP_003848954.1| - 1.5e-49 167.7 0.0 4.5e-49 166.2 0.0 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PriA_3primeBD PF17764.1 gi|304313807|ref|YP_003848954.1| - 0.094 12.6 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 3′ DNA-binding domain (3′BD) GARS_A PF01071.19 gi|304313808|ref|YP_003848955.1| - 2.8e-66 223.0 0.0 4e-66 222.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|304313808|ref|YP_003848955.1| - 2.4e-24 85.9 0.1 4.4e-24 85.1 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|304313808|ref|YP_003848955.1| - 1.7e-11 44.2 0.6 6.3e-11 42.4 0.2 2.2 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|304313808|ref|YP_003848955.1| - 2.8e-06 27.5 0.0 6.6e-05 23.0 0.0 2.5 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|304313808|ref|YP_003848955.1| - 0.0002 21.0 0.0 0.003 17.2 0.1 2.2 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|304313808|ref|YP_003848955.1| - 0.0011 18.3 0.0 0.007 15.7 0.0 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.16 gi|304313808|ref|YP_003848955.1| - 0.05 13.0 0.0 0.095 12.1 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp PF02222.22 gi|304313808|ref|YP_003848955.1| - 0.096 12.3 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain OTCace PF00185.24 gi|304313809|ref|YP_003848956.1| - 5.8e-61 205.2 0.0 1.1e-60 204.3 0.0 1.4 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|304313809|ref|YP_003848956.1| - 3.4e-46 156.9 0.0 4.8e-46 156.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OCD_Mu_crystall PF02423.15 gi|304313809|ref|YP_003848956.1| - 0.12 11.2 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family tRNA-synt_1d PF00750.19 gi|304313810|ref|YP_003848957.1| - 7.4e-38 130.4 0.1 1e-37 129.9 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|304313810|ref|YP_003848957.1| - 9.2e-33 112.9 0.0 1.9e-32 111.9 0.0 1.6 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|304313810|ref|YP_003848957.1| - 2.2e-20 73.0 0.1 3.3e-19 69.2 0.0 2.4 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|304313810|ref|YP_003848957.1| - 2.4e-10 39.9 0.1 0.00026 20.1 0.0 3.4 4 0 0 4 4 4 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|304313810|ref|YP_003848957.1| - 1e-06 27.8 0.1 0.0056 15.5 0.1 3.8 4 0 0 4 4 4 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|304313810|ref|YP_003848957.1| - 0.00018 21.0 0.0 0.0008 18.8 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|304313810|ref|YP_003848957.1| - 0.0051 15.1 0.0 0.011 14.0 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Peptidase_S24 PF00717.23 gi|304313811|ref|YP_003848958.1| - 1e-08 35.0 0.3 1.5e-08 34.5 0.3 1.3 1 0 0 1 1 1 1 Peptidase S24-like ILVD_EDD PF00920.21 gi|304313812|ref|YP_003848959.1| - 3.9e-220 731.9 7.2 4.4e-220 731.7 7.2 1.0 1 0 0 1 1 1 1 Dehydratase family DUF4378 PF14309.6 gi|304313812|ref|YP_003848959.1| - 0.021 15.2 0.0 0.071 13.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4378) DUF4010 PF13194.6 gi|304313813|ref|YP_003848960.1| - 2e-62 210.6 23.4 2e-62 210.6 23.4 3.0 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|304313813|ref|YP_003848960.1| - 1.5e-19 70.5 10.5 1.5e-19 70.5 10.5 3.6 3 1 1 4 4 4 1 MgtC family DUF2626 PF11117.8 gi|304313813|ref|YP_003848960.1| - 0.82 10.4 6.5 0.33 11.7 1.9 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2626) SLATT_fungal PF18142.1 gi|304313813|ref|YP_003848960.1| - 7.6 6.6 10.3 37 4.3 7.1 3.0 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain Cupin_2 PF07883.11 gi|304313814|ref|YP_003848961.1| - 1.8e-09 37.2 0.0 2.3e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|304313814|ref|YP_003848961.1| - 0.00022 21.1 0.0 0.00028 20.8 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.12 gi|304313814|ref|YP_003848961.1| - 0.0015 18.3 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.12 gi|304313814|ref|YP_003848961.1| - 0.0037 16.9 0.0 0.0046 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Ppnp PF06865.11 gi|304313814|ref|YP_003848961.1| - 0.0089 16.4 0.0 0.012 16.0 0.0 1.1 1 0 0 1 1 1 1 Pyrimidine/purine nucleoside phosphorylase Cupin_6 PF12852.7 gi|304313814|ref|YP_003848961.1| - 0.014 15.2 0.0 0.016 15.0 0.0 1.1 1 0 0 1 1 1 0 Cupin Ectoine_synth PF06339.12 gi|304313814|ref|YP_003848961.1| - 0.03 14.5 0.0 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase Cupin_1 PF00190.22 gi|304313814|ref|YP_003848961.1| - 0.059 13.0 0.0 0.07 12.7 0.0 1.2 1 0 0 1 1 1 0 Cupin Prismane PF03063.20 gi|304313815|ref|YP_003848962.1| - 5.6e-116 388.2 0.0 7.4e-98 328.4 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Rubredoxin PF00301.20 gi|304313815|ref|YP_003848962.1| - 2.5e-23 81.8 4.7 5.3e-23 80.8 4.7 1.6 1 0 0 1 1 1 1 Rubredoxin zinc_ribbon_9 PF14369.6 gi|304313815|ref|YP_003848962.1| - 0.42 10.9 3.9 1.1 9.5 0.9 2.5 2 0 0 2 2 2 0 zinc-ribbon TrmB PF01978.19 gi|304313816|ref|YP_003848963.1| - 1.2e-22 79.6 0.0 2e-22 78.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|304313816|ref|YP_003848963.1| - 6.3e-05 22.7 0.0 0.00016 21.4 0.0 1.8 1 1 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|304313816|ref|YP_003848963.1| - 0.00081 19.7 0.0 0.0019 18.5 0.0 1.6 1 1 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|304313816|ref|YP_003848963.1| - 0.0056 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 MarR family Regulator_TrmB PF11495.8 gi|304313816|ref|YP_003848963.1| - 0.018 14.2 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB HTH_20 PF12840.7 gi|304313816|ref|YP_003848963.1| - 0.036 14.1 0.1 0.17 12.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.21 gi|304313816|ref|YP_003848963.1| - 0.056 13.1 0.0 0.17 11.6 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_46 PF15977.5 gi|304313816|ref|YP_003848963.1| - 0.056 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding HTH_CodY PF08222.11 gi|304313816|ref|YP_003848963.1| - 0.093 12.3 0.1 0.19 11.3 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|304313816|ref|YP_003848963.1| - 0.13 12.3 0.1 0.37 10.8 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|304313816|ref|YP_003848963.1| - 0.13 12.5 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PLDc_2 PF13091.6 gi|304313816|ref|YP_003848963.1| - 0.15 12.0 0.1 2.9 7.8 0.0 2.4 2 1 0 3 3 3 0 PLD-like domain tRNA-Thr_ED PF08915.11 gi|304313817|ref|YP_003848964.1| - 2.9e-54 182.8 0.0 5.3e-54 182.0 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|304313817|ref|YP_003848964.1| - 2.4e-23 82.1 0.4 5.5e-23 80.9 0.4 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|304313817|ref|YP_003848964.1| - 1.9e-16 60.5 0.0 4.5e-16 59.3 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Band_7 PF01145.25 gi|304313817|ref|YP_003848964.1| - 0.18 11.8 0.2 18 5.2 0.0 2.4 2 0 0 2 2 2 0 SPFH domain / Band 7 family AAA_31 PF13614.6 gi|304313818|ref|YP_003848965.1| - 3.2e-62 209.6 0.0 3.9e-62 209.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|304313818|ref|YP_003848965.1| - 1.2e-22 80.4 0.0 1.4e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|304313818|ref|YP_003848965.1| - 1.6e-11 44.1 0.0 7e-11 42.0 0.0 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|304313818|ref|YP_003848965.1| - 2.2e-11 43.7 0.0 5e-11 42.5 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|304313818|ref|YP_003848965.1| - 2.2e-10 40.3 0.6 2.5e-09 36.8 0.1 2.2 2 1 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 gi|304313818|ref|YP_003848965.1| - 1.9e-08 34.1 0.0 2.1e-07 30.7 0.0 2.1 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|304313818|ref|YP_003848965.1| - 1.8e-05 24.1 0.6 7.7e-05 22.0 0.2 1.9 1 1 1 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|304313818|ref|YP_003848965.1| - 0.077 12.3 0.4 0.3 10.4 0.1 1.9 2 0 0 2 2 2 0 VirC1 protein ATP_bind_1 PF03029.17 gi|304313818|ref|YP_003848965.1| - 0.082 12.7 0.2 0.2 11.4 0.1 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 gi|304313818|ref|YP_003848965.1| - 0.1 12.4 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Rap1a PF18602.1 gi|304313819|ref|YP_003848966.1| - 0.039 14.3 0.1 0.068 13.5 0.1 1.3 1 0 0 1 1 1 0 Rap1a immunity proteins Radical_SAM PF04055.21 gi|304313820|ref|YP_003848967.1| - 2e-11 44.5 0.1 4.7e-11 43.4 0.1 1.6 1 1 1 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.7 gi|304313820|ref|YP_003848967.1| - 1.4e-05 25.3 0.0 0.00011 22.4 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|304313820|ref|YP_003848967.1| - 0.0058 17.2 0.0 0.018 15.7 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|304313820|ref|YP_003848967.1| - 0.061 13.4 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH PF00633.23 gi|304313820|ref|YP_003848967.1| - 0.069 13.1 0.2 0.43 10.6 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif SAM_PNT PF02198.16 gi|304313820|ref|YP_003848967.1| - 0.078 13.0 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Sterile alpha motif (SAM)/Pointed domain HHH_8 PF14716.6 gi|304313820|ref|YP_003848967.1| - 0.18 12.2 0.0 0.51 10.7 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain Lar_restr_allev PF14354.6 gi|304313821|ref|YP_003848968.1| - 0.047 14.1 3.6 0.047 14.1 3.6 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar DpnI PF06044.12 gi|304313821|ref|YP_003848968.1| - 0.29 10.8 2.7 0.19 11.3 0.9 1.6 2 0 0 2 2 2 0 Dam-replacing family Prim_Zn_Ribbon PF08273.12 gi|304313821|ref|YP_003848968.1| - 2.7 8.4 15.1 0.075 13.3 8.7 1.8 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase GATase_3 PF07685.14 gi|304313822|ref|YP_003848969.1| - 8.2e-39 133.2 0.0 1.4e-38 132.5 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|304313822|ref|YP_003848969.1| - 5e-16 58.9 0.1 7.9e-16 58.3 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|304313822|ref|YP_003848969.1| - 1.4e-15 57.7 2.3 2.2e-10 40.7 0.1 2.3 1 1 0 2 2 2 2 AAA domain DJ-1_PfpI PF01965.24 gi|304313822|ref|YP_003848969.1| - 0.0025 17.6 0.0 0.0044 16.8 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family SNO PF01174.19 gi|304313822|ref|YP_003848969.1| - 0.0057 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_S51 PF03575.17 gi|304313822|ref|YP_003848969.1| - 0.011 15.4 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S51 DUF1611 PF07755.11 gi|304313822|ref|YP_003848969.1| - 0.067 12.5 0.1 0.18 11.0 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain O_anti_polymase PF01901.16 gi|304313823|ref|YP_003848970.1| - 1.6e-99 333.3 27.1 1.9e-99 333.1 27.1 1.0 1 0 0 1 1 1 1 Putative O-antigen polymerase Epimerase_2 PF02350.19 gi|304313824|ref|YP_003848971.1| - 8.9e-06 24.8 0.0 0.00053 19.0 0.0 2.2 2 0 0 2 2 2 2 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.12 gi|304313824|ref|YP_003848971.1| - 0.00018 20.7 0.0 0.0003 20.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_tran_28_C PF04101.16 gi|304313824|ref|YP_003848971.1| - 0.019 14.9 0.1 0.041 13.9 0.1 1.5 1 1 0 1 1 1 0 Glycosyltransferase family 28 C-terminal domain Glyco_transf_4 PF13439.6 gi|304313824|ref|YP_003848971.1| - 0.079 13.0 0.0 0.82 9.6 0.0 2.2 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Peptidase_C39 PF03412.15 gi|304313825|ref|YP_003848972.1| - 2.6e-35 121.1 0.0 2.8e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Peptidase C39 family Peptidase_C39_2 PF13529.6 gi|304313825|ref|YP_003848972.1| - 5.8e-05 23.7 0.2 0.0024 18.4 0.0 2.0 1 1 1 2 2 2 1 Peptidase_C39 like family DUF3335 PF11814.8 gi|304313825|ref|YP_003848972.1| - 0.00052 19.5 0.6 0.026 14.0 0.2 2.5 1 1 1 2 2 2 1 Peptidase_C39 like family Peptidase_C58 PF03543.14 gi|304313825|ref|YP_003848972.1| - 0.2 11.4 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Yersinia/Haemophilus virulence surface antigen MTD PF01993.18 gi|304313826|ref|YP_003848973.1| - 1.1e-139 464.5 2.9 1.2e-139 464.3 2.9 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase TraQ PF09679.10 gi|304313826|ref|YP_003848973.1| - 0.14 12.1 0.0 0.4 10.6 0.0 1.8 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) GATase_4 PF13230.6 gi|304313827|ref|YP_003848974.1| - 5e-80 268.3 0.0 5.5e-80 268.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|304313827|ref|YP_003848974.1| - 0.00018 21.7 0.0 0.0003 21.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain IGPD PF00475.18 gi|304313828|ref|YP_003848975.1| - 2.6e-59 199.6 2.0 2.6e-59 199.6 2.0 1.3 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase Fer4 PF00037.27 gi|304313829|ref|YP_003848976.1| - 2.8e-14 52.2 14.1 5.6e-08 32.3 5.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|304313829|ref|YP_003848976.1| - 5.3e-10 39.3 25.0 9.6e-08 32.1 13.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304313829|ref|YP_003848976.1| - 7e-10 38.9 22.3 6.1e-09 35.9 12.5 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304313829|ref|YP_003848976.1| - 7.4e-10 38.5 13.2 5.8e-06 26.1 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304313829|ref|YP_003848976.1| - 2.7e-09 37.5 9.5 3.8e-05 24.2 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304313829|ref|YP_003848976.1| - 2e-08 33.8 12.2 7.4e-07 28.9 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304313829|ref|YP_003848976.1| - 2.3e-08 34.9 9.2 0.00011 23.1 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|304313829|ref|YP_003848976.1| - 7.7e-07 29.2 8.6 1.2e-06 28.5 8.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304313829|ref|YP_003848976.1| - 3e-05 24.5 16.3 0.015 15.9 3.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304313829|ref|YP_003848976.1| - 5.3e-05 23.6 14.7 0.037 14.5 2.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304313829|ref|YP_003848976.1| - 6.2e-05 23.5 10.2 0.0024 18.4 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|304313829|ref|YP_003848976.1| - 0.00035 20.8 17.2 0.0027 18.1 5.9 2.2 1 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|304313829|ref|YP_003848976.1| - 0.00037 21.2 19.3 0.0022 18.8 5.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|304313829|ref|YP_003848976.1| - 0.0027 18.4 10.0 0.003 18.2 1.0 2.5 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|304313829|ref|YP_003848976.1| - 0.011 16.6 8.3 0.14 13.0 2.6 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|304313829|ref|YP_003848976.1| - 0.21 11.7 6.1 0.33 11.1 6.1 1.4 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_18 PF13746.6 gi|304313829|ref|YP_003848976.1| - 3.5 7.8 8.9 11 6.2 1.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain TOBE PF03459.17 gi|304313830|ref|YP_003848977.1| - 6.6e-21 74.4 0.3 4.2e-16 59.0 0.0 3.2 2 1 0 2 2 2 2 TOBE domain HTH_1 PF00126.27 gi|304313830|ref|YP_003848977.1| - 4.8e-12 45.6 0.1 8.8e-12 44.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE_2 PF08402.10 gi|304313830|ref|YP_003848977.1| - 1e-05 25.6 0.1 0.018 15.2 0.0 3.0 1 1 1 2 2 2 2 TOBE domain HTH_28 PF13518.6 gi|304313830|ref|YP_003848977.1| - 0.0021 18.2 0.8 0.004 17.2 0.8 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MazE_antitoxin PF04014.18 gi|304313830|ref|YP_003848977.1| - 0.019 14.9 3.0 0.15 12.0 0.3 2.9 2 1 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin HTH_23 PF13384.6 gi|304313830|ref|YP_003848977.1| - 0.026 14.3 0.0 0.058 13.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF2089 PF09862.9 gi|304313830|ref|YP_003848977.1| - 0.12 12.4 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Polysacc_synt PF01943.17 gi|304313831|ref|YP_003848978.1| - 8.3e-40 136.9 24.7 8.3e-40 136.9 24.7 3.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|304313831|ref|YP_003848978.1| - 2.2e-27 96.0 16.1 2.2e-27 96.0 16.1 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|304313831|ref|YP_003848978.1| - 6.6e-23 81.4 25.1 6.6e-23 81.4 25.1 4.0 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|304313831|ref|YP_003848978.1| - 1.9e-19 69.9 32.3 1.9e-14 53.6 16.9 3.6 4 1 0 4 4 4 2 MatE MurJ PF03023.14 gi|304313831|ref|YP_003848978.1| - 5.7e-16 58.2 41.7 1.1e-15 57.2 41.7 1.4 1 1 0 1 1 1 1 Lipid II flippase MurJ FMN_red PF03358.15 gi|304313832|ref|YP_003848979.1| - 3.1e-33 114.7 0.0 4.1e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|304313832|ref|YP_003848979.1| - 1.7e-06 27.9 0.0 2.4e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.9 gi|304313832|ref|YP_003848979.1| - 0.0087 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Fae PF08714.11 gi|304313833|ref|YP_003848980.1| - 4e-70 234.9 0.0 6.9e-70 234.1 0.0 1.4 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|304313833|ref|YP_003848980.1| - 1.1e-25 90.6 0.1 1.7e-25 90.0 0.1 1.3 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|304313833|ref|YP_003848980.1| - 0.0063 15.9 0.3 0.018 14.4 0.3 1.9 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family Sld7_C PF18596.1 gi|304313833|ref|YP_003848980.1| - 0.02 15.0 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 Sld7 C-terminal domain PcrB PF01884.17 gi|304313833|ref|YP_003848980.1| - 0.042 13.3 1.7 3 7.3 0.1 2.3 1 1 0 2 2 2 0 PcrB family EFG_IV PF03764.18 gi|304313833|ref|YP_003848980.1| - 0.064 13.0 0.2 8.8 6.1 0.0 2.7 3 0 0 3 3 3 0 Elongation factor G, domain IV Sh_2 PF17512.2 gi|304313834|ref|YP_003848981.1| - 0.035 13.9 0.0 0.043 13.6 0.0 1.0 1 0 0 1 1 1 0 Metapneumovirus Small hydrophobic protein DUF515 PF04415.12 gi|304313834|ref|YP_003848981.1| - 0.18 10.1 0.0 0.19 10.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) PALP PF00291.25 gi|304313835|ref|YP_003848982.1| - 5.3e-42 144.2 0.0 6.2e-42 144.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1786 PF08735.10 gi|304313836|ref|YP_003848983.1| - 4.7e-83 278.3 0.4 6.4e-83 277.9 0.4 1.2 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) PHP_C PF13263.6 gi|304313837|ref|YP_003848984.1| - 2.3e-19 68.9 0.1 4.2e-19 68.1 0.1 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|304313837|ref|YP_003848984.1| - 3.8e-06 27.3 0.0 8.5e-06 26.2 0.0 1.7 1 1 0 1 1 1 1 PHP domain DUF63 PF01889.17 gi|304313838|ref|YP_003848985.1| - 1.5e-66 225.4 11.4 1.7e-66 225.2 11.4 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 MNHE PF01899.16 gi|304313838|ref|YP_003848985.1| - 4.6 7.0 9.7 0.32 10.7 0.8 2.4 2 1 0 2 2 2 0 Na+/H+ ion antiporter subunit HMGL-like PF00682.19 gi|304313839|ref|YP_003848986.1| - 5.6e-89 298.2 0.2 5.6e-89 298.2 0.2 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|304313839|ref|YP_003848986.1| - 3.1e-37 127.4 3.9 5.8e-37 126.6 3.9 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.24 gi|304313839|ref|YP_003848986.1| - 0.0093 15.4 0.1 0.39 10.1 0.0 3.2 2 1 1 3 3 3 1 Xylose isomerase-like TIM barrel Oxidored_nitro PF00148.19 gi|304313840|ref|YP_003848987.1| - 3.6e-89 299.3 0.1 4e-89 299.1 0.1 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Alba PF01918.21 gi|304313841|ref|YP_003848988.1| - 3.4e-23 81.2 0.3 4.3e-23 80.9 0.3 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|304313841|ref|YP_003848988.1| - 0.0067 16.4 0.0 0.0069 16.3 0.0 1.3 1 0 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P Phage_TAC_10 PF10963.8 gi|304313841|ref|YP_003848988.1| - 0.031 14.5 0.1 0.047 13.9 0.1 1.2 1 0 0 1 1 1 0 Phage tail assembly chaperone Flavodoxin_5 PF12724.7 gi|304313843|ref|YP_003848990.1| - 9.2e-15 55.1 0.0 1.6e-14 54.4 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Putative_PNPOx PF01243.20 gi|304313843|ref|YP_003848990.1| - 5.2e-12 45.8 0.0 1.4e-11 44.4 0.0 1.7 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|304313843|ref|YP_003848990.1| - 1.9e-09 37.6 0.0 2.9e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Flavodoxin_3 PF12641.7 gi|304313843|ref|YP_003848990.1| - 1.4e-06 28.1 0.0 2.8e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain PS_pyruv_trans PF04230.13 gi|304313843|ref|YP_003848990.1| - 0.0077 16.2 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase FMN_red PF03358.15 gi|304313843|ref|YP_003848990.1| - 0.052 13.3 0.0 0.15 11.8 0.0 1.7 1 1 0 1 1 1 0 NADPH-dependent FMN reductase TSA PF03249.13 gi|304313843|ref|YP_003848990.1| - 0.14 10.9 0.0 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 Type specific antigen PQQ_2 PF13360.6 gi|304313844|ref|YP_003848991.1| - 2.8e-82 275.9 17.8 6.5e-30 104.5 2.4 3.7 1 1 4 5 5 5 5 PQQ-like domain PQQ_3 PF13570.6 gi|304313844|ref|YP_003848991.1| - 5.2e-81 265.4 30.2 1.8e-12 47.4 5.1 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|304313844|ref|YP_003848991.1| - 2.7e-79 257.6 24.1 1.6e-11 43.5 0.2 8.2 8 0 0 8 8 8 8 PQQ enzyme repeat WD40_like PF17005.5 gi|304313844|ref|YP_003848991.1| - 0.00094 18.6 0.0 4.4 6.5 0.0 3.2 2 1 1 3 3 3 3 WD40-like domain ANAPC4_WD40 PF12894.7 gi|304313844|ref|YP_003848991.1| - 0.0011 19.3 0.0 14 6.1 0.0 4.5 4 2 1 5 5 5 2 Anaphase-promoting complex subunit 4 WD40 domain SUKH-4 PF14435.6 gi|304313844|ref|YP_003848991.1| - 0.0025 17.9 0.5 3.3 7.7 0.0 3.7 3 1 1 4 4 4 2 SUKH-4 immunity protein ABC2_membrane_3 PF12698.7 gi|304313845|ref|YP_003848992.1| - 2.9e-43 148.3 14.9 3.9e-43 147.9 14.9 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|304313845|ref|YP_003848992.1| - 5.3e-39 133.8 25.6 3e-37 128.1 15.7 2.5 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|304313845|ref|YP_003848992.1| - 3.2e-19 69.3 12.7 5e-19 68.7 12.7 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|304313845|ref|YP_003848992.1| - 2e-07 30.7 13.3 1.2e-05 24.9 6.2 2.4 2 1 0 2 2 2 2 CcmB protein Glyco_hydro_6 PF01341.17 gi|304313845|ref|YP_003848992.1| - 0.17 11.6 0.0 0.21 11.3 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 6 CCB1 PF12046.8 gi|304313845|ref|YP_003848992.1| - 0.57 9.5 2.5 1.1 8.6 2.5 1.4 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B ABC2_membrane_5 PF13346.6 gi|304313845|ref|YP_003848992.1| - 0.65 9.5 20.9 0.65 9.5 11.9 2.5 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|304313846|ref|YP_003848993.1| - 1e-31 110.3 0.0 2e-31 109.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|304313846|ref|YP_003848993.1| - 2.7e-16 60.3 0.2 7.5e-12 45.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|304313846|ref|YP_003848993.1| - 8.9e-08 32.7 0.1 3.6e-07 30.8 0.0 2.1 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|304313846|ref|YP_003848993.1| - 7.8e-06 25.8 1.4 0.089 12.5 0.0 2.7 2 1 0 3 3 3 2 AAA ATPase domain Mg_chelatase PF01078.21 gi|304313846|ref|YP_003848993.1| - 0.0088 15.4 0.0 0.036 13.4 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|304313846|ref|YP_003848993.1| - 0.0098 16.1 0.1 0.16 12.2 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|304313846|ref|YP_003848993.1| - 0.033 13.9 0.1 0.058 13.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|304313846|ref|YP_003848993.1| - 0.075 12.6 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|304313846|ref|YP_003848993.1| - 0.1 12.2 0.3 0.29 10.7 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_10 PF12846.7 gi|304313846|ref|YP_003848993.1| - 0.11 11.4 1.0 4.9 6.0 0.1 2.3 2 1 0 2 2 2 0 AAA-like domain Tnp_P_element PF12017.8 gi|304313846|ref|YP_003848993.1| - 0.17 11.3 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Transposase protein AAA_23 PF13476.6 gi|304313846|ref|YP_003848993.1| - 0.17 12.3 6.2 0.34 11.4 6.2 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|304313846|ref|YP_003848993.1| - 0.19 12.1 1.4 1.1 9.7 0.3 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PadR PF03551.14 gi|304313847|ref|YP_003848994.1| - 4.1e-16 58.7 0.1 1e-15 57.4 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|304313847|ref|YP_003848994.1| - 5.7e-07 30.2 0.0 7.7e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 gi|304313847|ref|YP_003848994.1| - 0.006 16.7 0.0 0.0088 16.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|304313847|ref|YP_003848994.1| - 0.023 14.4 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|304313847|ref|YP_003848994.1| - 0.046 13.7 0.1 0.11 12.5 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix AP_endonuc_2 PF01261.24 gi|304313848|ref|YP_003848995.1| - 2.5e-20 72.9 0.1 5.2e-20 71.8 0.1 1.5 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel SBP PF03110.14 gi|304313848|ref|YP_003848995.1| - 0.13 12.6 0.1 0.26 11.6 0.1 1.5 1 0 0 1 1 1 0 SBP domain DUF1211 PF06736.11 gi|304313849|ref|YP_003848996.1| - 7.6e-25 87.2 2.1 7.6e-25 87.2 2.1 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1211) DrsE PF02635.15 gi|304313850|ref|YP_003848997.1| - 1.2e-12 48.2 0.0 1.5e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|304313850|ref|YP_003848997.1| - 0.014 15.3 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 DsrE/DsrF/DrsH-like family DsrH PF04077.12 gi|304313850|ref|YP_003848997.1| - 0.028 14.6 0.1 0.036 14.2 0.1 1.3 1 1 0 1 1 1 0 DsrH like protein 5_nucleotid_C PF02872.18 gi|304313851|ref|YP_003848998.1| - 9.4e-19 68.2 0.0 1.5e-18 67.5 0.0 1.3 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|304313851|ref|YP_003848998.1| - 0.0036 17.8 1.6 0.057 13.9 1.6 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Hydrolase PF00702.26 gi|304313852|ref|YP_003848999.1| - 2.3e-22 80.3 0.0 3.9e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|304313852|ref|YP_003848999.1| - 7.4e-07 29.2 0.3 0.17 11.6 0.0 3.1 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|304313852|ref|YP_003848999.1| - 9e-05 22.6 0.0 0.0012 18.9 0.0 2.4 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.14 gi|304313852|ref|YP_003848999.1| - 0.013 15.1 0.0 0.059 12.9 0.0 1.9 1 1 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.6 gi|304313852|ref|YP_003848999.1| - 0.019 15.1 0.0 0.32 11.1 0.0 2.6 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|304313852|ref|YP_003848999.1| - 0.039 14.3 0.0 0.7 10.3 0.0 2.7 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Transketolase_C PF02780.20 gi|304313852|ref|YP_003848999.1| - 0.042 13.7 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Transketolase, C-terminal domain Acid_PPase PF12689.7 gi|304313852|ref|YP_003848999.1| - 0.075 12.9 0.0 0.4 10.5 0.0 2.1 2 1 1 3 3 3 0 Acid Phosphatase SPOUT_MTase_2 PF14419.6 gi|304313852|ref|YP_003848999.1| - 0.086 12.2 0.2 0.29 10.5 0.1 1.9 1 1 1 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP DUF1156 PF06634.12 gi|304313853|ref|YP_003849000.1| - 4.3e-23 81.2 0.3 1.1e-22 79.9 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_11 PF08241.12 gi|304313853|ref|YP_003849000.1| - 2.9e-05 24.6 0.1 0.61 10.8 0.0 3.5 3 0 0 3 3 3 2 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|304313853|ref|YP_003849000.1| - 0.00022 20.9 0.1 0.45 10.1 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical protein 95 N6_N4_Mtase PF01555.18 gi|304313853|ref|YP_003849000.1| - 0.00023 20.9 0.0 0.024 14.4 0.0 2.3 2 0 0 2 2 2 1 DNA methylase Methyltransf_25 PF13649.6 gi|304313853|ref|YP_003849000.1| - 0.013 16.2 0.1 15 6.4 0.0 3.5 4 0 0 4 4 4 0 Methyltransferase domain UPF0020 PF01170.18 gi|304313853|ref|YP_003849000.1| - 0.016 14.9 0.0 1.4 8.6 0.0 3.1 3 0 0 3 3 3 0 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|304313853|ref|YP_003849000.1| - 0.049 13.3 0.0 0.93 9.1 0.0 2.2 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase LysE PF01810.18 gi|304313854|ref|YP_003849001.1| - 4.4e-36 124.2 11.4 5.4e-36 123.9 11.4 1.1 1 0 0 1 1 1 1 LysE type translocator OCD_Mu_crystall PF02423.15 gi|304313856|ref|YP_003849003.1| - 3.7e-128 427.0 0.0 4.3e-128 426.7 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|304313856|ref|YP_003849003.1| - 1e-05 25.6 0.0 1.9e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|304313856|ref|YP_003849003.1| - 0.031 13.6 0.0 0.054 12.8 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.6 gi|304313856|ref|YP_003849003.1| - 0.042 13.7 0.0 0.077 12.9 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H-binding Amidase PF01425.21 gi|304313857|ref|YP_003849004.1| - 3.9e-132 441.4 0.0 4.5e-132 441.2 0.0 1.0 1 0 0 1 1 1 1 Amidase ThiP_synth PF10120.9 gi|304313857|ref|YP_003849004.1| - 0.051 13.2 0.1 0.093 12.3 0.1 1.5 1 0 0 1 1 1 0 Thiamine-phosphate synthase GATase_3 PF07685.14 gi|304313858|ref|YP_003849005.1| - 5.1e-16 58.8 0.0 8.9e-16 58.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|304313858|ref|YP_003849005.1| - 1e-13 51.6 0.3 1.7e-11 44.4 0.3 2.2 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|304313858|ref|YP_003849005.1| - 3.6e-09 36.8 0.0 6.8e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_5 PF13507.6 gi|304313858|ref|YP_003849005.1| - 4.3e-06 26.0 0.0 0.0016 17.6 0.0 2.7 2 1 0 2 2 2 2 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|304313858|ref|YP_003849005.1| - 0.00018 21.3 0.0 0.00052 19.9 0.0 1.7 1 0 0 1 1 1 1 DJ-1/PfpI family MobB PF03205.14 gi|304313858|ref|YP_003849005.1| - 0.00021 21.2 0.1 0.0074 16.2 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B GATase PF00117.28 gi|304313858|ref|YP_003849005.1| - 0.0018 18.1 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|304313858|ref|YP_003849005.1| - 0.015 15.2 0.1 0.09 12.6 0.1 2.0 1 1 1 2 2 2 0 SNO glutamine amidotransferase family ATPase PF06745.13 gi|304313859|ref|YP_003849006.1| - 4e-66 222.7 0.2 4.4e-66 222.5 0.2 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|304313859|ref|YP_003849006.1| - 1.5e-07 31.2 0.0 4.1e-07 29.8 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|304313859|ref|YP_003849006.1| - 4.6e-05 23.2 0.0 7.9e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|304313859|ref|YP_003849006.1| - 8.7e-05 22.0 0.0 0.00012 21.5 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|304313859|ref|YP_003849006.1| - 0.00014 21.7 0.0 0.00075 19.3 0.0 2.0 2 1 0 2 2 2 1 IstB-like ATP binding protein GvpD PF07088.11 gi|304313859|ref|YP_003849006.1| - 0.00044 19.0 0.0 0.00059 18.6 0.0 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.21 gi|304313859|ref|YP_003849006.1| - 0.0012 18.4 0.0 0.0022 17.5 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_16 PF13191.6 gi|304313859|ref|YP_003849006.1| - 0.017 15.5 0.0 0.021 15.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|304313859|ref|YP_003849006.1| - 0.022 14.6 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|304313859|ref|YP_003849006.1| - 0.031 14.2 0.0 0.05 13.5 0.0 1.4 1 1 0 1 1 1 0 NTPase AAA_22 PF13401.6 gi|304313859|ref|YP_003849006.1| - 0.05 13.9 0.1 0.086 13.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|304313859|ref|YP_003849006.1| - 0.081 12.2 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) UPF0227 PF05728.12 gi|304313859|ref|YP_003849006.1| - 0.11 12.5 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) AAA_5 PF07728.14 gi|304313859|ref|YP_003849006.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|304313859|ref|YP_003849006.1| - 0.18 11.7 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DHBP_synthase PF00926.19 gi|304313860|ref|YP_003849007.1| - 6.5e-67 224.8 0.3 7.6e-67 224.6 0.3 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase PEP-utilizers PF00391.23 gi|304313860|ref|YP_003849007.1| - 0.032 13.9 0.2 1.1 9.0 0.0 2.7 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain CTP-dep_RFKase PF01982.16 gi|304313861|ref|YP_003849008.1| - 3.9e-32 110.9 0.0 4.8e-32 110.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF120 MazE_antitoxin PF04014.18 gi|304313861|ref|YP_003849008.1| - 0.014 15.4 0.1 0.86 9.6 0.0 2.3 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin tRNA-synt_2d PF01409.20 gi|304313862|ref|YP_003849009.1| - 1.4e-56 191.7 0.0 2.3e-54 184.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|304313862|ref|YP_003849009.1| - 2.6e-10 40.2 0.1 7.1e-10 38.8 0.1 1.8 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|304313862|ref|YP_003849009.1| - 1.5e-06 27.8 0.0 0.00029 20.4 0.0 2.1 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2b PF00587.25 gi|304313862|ref|YP_003849009.1| - 0.0088 16.0 0.0 0.024 14.6 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|304313862|ref|YP_003849009.1| - 0.21 10.6 0.1 6.3 5.8 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) FAD_binding_2 PF00890.24 gi|304313864|ref|YP_003849011.1| - 7.7e-104 348.1 2.0 1.1e-103 347.6 2.0 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|304313864|ref|YP_003849011.1| - 2.7e-24 85.6 0.0 4.7e-24 84.8 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|304313864|ref|YP_003849011.1| - 2.1e-08 33.8 0.1 0.0047 16.2 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|304313864|ref|YP_003849011.1| - 0.00033 20.3 0.1 0.00049 19.8 0.0 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|304313864|ref|YP_003849011.1| - 0.0072 15.6 3.3 0.057 12.6 0.1 2.9 3 0 0 3 3 3 1 Thi4 family HI0933_like PF03486.14 gi|304313864|ref|YP_003849011.1| - 0.037 12.7 3.1 0.63 8.7 0.2 2.9 3 0 0 3 3 3 0 HI0933-like protein GIDA PF01134.22 gi|304313864|ref|YP_003849011.1| - 0.74 8.8 6.9 0.61 9.1 0.7 2.9 3 0 0 3 3 3 0 Glucose inhibited division protein A HAD_2 PF13419.6 gi|304313865|ref|YP_003849012.1| - 7.2e-14 52.3 0.0 1.1e-13 51.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|304313865|ref|YP_003849012.1| - 3.7e-10 40.5 0.7 5.1e-10 40.1 0.3 1.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|304313865|ref|YP_003849012.1| - 1.9e-06 28.3 0.0 3.6e-05 24.1 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|304313865|ref|YP_003849012.1| - 0.0022 18.0 0.0 0.0057 16.7 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Amidohydro_1 PF01979.20 gi|304313866|ref|YP_003849013.1| - 4.2e-87 292.7 0.3 4.9e-87 292.5 0.3 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|304313866|ref|YP_003849013.1| - 8.4e-22 78.3 1.8 6.2e-17 62.2 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|304313866|ref|YP_003849013.1| - 0.0039 16.6 0.0 0.0066 15.9 0.0 1.3 1 0 0 1 1 1 1 TatD related DNase A_deaminase PF00962.22 gi|304313866|ref|YP_003849013.1| - 0.0054 16.1 0.0 0.0093 15.3 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase AP_endonuc_2 PF01261.24 gi|304313866|ref|YP_003849013.1| - 0.037 13.5 0.1 0.85 9.0 0.1 2.3 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel PUA_3 PF17785.1 gi|304313866|ref|YP_003849013.1| - 0.14 12.0 0.0 0.37 10.6 0.0 1.7 1 0 0 1 1 1 0 PUA-like domain HisG PF01634.18 gi|304313867|ref|YP_003849014.1| - 9.8e-50 168.6 0.0 1.4e-49 168.1 0.0 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|304313867|ref|YP_003849014.1| - 3.3e-26 91.2 0.1 6.2e-26 90.4 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain LysR_substrate PF03466.20 gi|304313867|ref|YP_003849014.1| - 0.013 14.9 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 LysR substrate binding domain FAA_hydrolase PF01557.18 gi|304313868|ref|YP_003849015.1| - 4.7e-68 229.1 0.0 5.5e-68 228.9 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|304313868|ref|YP_003849015.1| - 0.0053 17.6 0.0 0.015 16.2 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF2437) tRNA-synt_1 PF00133.22 gi|304313869|ref|YP_003849016.1| - 1.7e-66 224.8 0.0 5.9e-64 216.4 0.0 2.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|304313869|ref|YP_003849016.1| - 2.8e-24 85.8 0.1 5.8e-24 84.8 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|304313869|ref|YP_003849016.1| - 6.5e-24 84.4 0.5 1.2e-10 40.8 0.1 3.5 2 2 1 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|304313869|ref|YP_003849016.1| - 2.6e-09 36.8 0.0 8.3e-09 35.2 0.0 1.8 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|304313869|ref|YP_003849016.1| - 4.6e-09 36.0 0.1 0.00054 19.4 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|304313869|ref|YP_003849016.1| - 0.00018 20.6 0.0 0.0068 15.4 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (K) CutA1 PF03091.15 gi|304313870|ref|YP_003849017.1| - 3.7e-35 119.7 0.1 4.1e-35 119.6 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DEAD PF00270.29 gi|304313870|ref|YP_003849017.1| - 0.00092 19.0 0.0 0.0011 18.8 0.0 1.1 1 0 0 1 1 1 1 DEAD/DEAH box helicase ATP-synt_F PF01990.17 gi|304313870|ref|YP_003849017.1| - 0.028 14.7 0.4 0.12 12.7 0.1 1.8 1 1 1 2 2 2 0 ATP synthase (F/14-kDa) subunit NAD_synthase PF02540.17 gi|304313871|ref|YP_003849018.1| - 5e-91 304.1 0.0 5.7e-91 303.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|304313871|ref|YP_003849018.1| - 7.8e-08 31.5 0.0 7.8e-05 21.6 0.0 2.4 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|304313871|ref|YP_003849018.1| - 9.1e-07 28.9 0.0 1.1e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|304313871|ref|YP_003849018.1| - 0.0031 17.0 0.0 0.01 15.4 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC IF2_N PF04760.15 gi|304313871|ref|YP_003849018.1| - 0.0079 16.0 1.8 4.6 7.1 0.0 3.0 3 0 0 3 3 3 2 Translation initiation factor IF-2, N-terminal region Sigma70_r4 PF04545.16 gi|304313871|ref|YP_003849018.1| - 0.017 14.7 0.1 0.94 9.1 0.0 3.1 3 0 0 3 3 3 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|304313871|ref|YP_003849018.1| - 0.19 11.4 0.1 16 5.2 0.0 3.2 3 0 0 3 3 3 0 Sigma-70, region 4 Sigma70_r3 PF04539.16 gi|304313871|ref|YP_003849018.1| - 0.38 10.9 1.9 0.76 9.9 0.0 2.3 3 0 0 3 3 3 0 Sigma-70 region 3 ArsA_ATPase PF02374.15 gi|304313872|ref|YP_003849019.1| - 9.9e-128 425.6 0.5 1.1e-127 425.4 0.5 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|304313872|ref|YP_003849019.1| - 2.9e-16 59.9 0.1 1.9e-15 57.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|304313872|ref|YP_003849019.1| - 3.6e-11 43.0 5.8 1.5e-05 24.6 2.5 2.9 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|304313872|ref|YP_003849019.1| - 3.9e-11 43.1 0.0 1.2e-10 41.5 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|304313872|ref|YP_003849019.1| - 2.7e-06 27.1 0.0 4.7e-05 23.0 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|304313872|ref|YP_003849019.1| - 2.7e-05 23.9 0.6 0.014 15.0 0.5 2.5 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 gi|304313872|ref|YP_003849019.1| - 4.8e-05 23.0 0.0 0.00048 19.7 0.0 2.1 1 1 1 2 2 2 1 Cellulose biosynthesis protein BcsQ PhoH PF02562.16 gi|304313872|ref|YP_003849019.1| - 0.00057 19.4 0.1 0.0012 18.3 0.1 1.5 1 0 0 1 1 1 1 PhoH-like protein AAA_13 PF13166.6 gi|304313872|ref|YP_003849019.1| - 0.00092 18.0 0.2 0.00092 18.0 0.2 1.8 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|304313872|ref|YP_003849019.1| - 0.0026 16.8 0.1 0.0065 15.5 0.1 1.6 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 gi|304313872|ref|YP_003849019.1| - 0.01 15.0 0.2 0.024 13.8 0.2 1.5 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|304313872|ref|YP_003849019.1| - 0.015 14.5 0.0 0.038 13.3 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|304313872|ref|YP_003849019.1| - 0.018 14.8 0.1 0.043 13.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|304313872|ref|YP_003849019.1| - 0.02 14.5 4.1 0.066 12.8 2.2 2.6 1 1 1 2 2 2 0 AAA domain SecA_DEAD PF07517.14 gi|304313872|ref|YP_003849019.1| - 0.021 14.1 1.1 0.051 12.9 0.4 1.9 1 1 1 2 2 2 0 SecA DEAD-like domain AAA_16 PF13191.6 gi|304313872|ref|YP_003849019.1| - 0.027 14.8 0.0 0.067 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|304313872|ref|YP_003849019.1| - 0.049 13.4 0.2 0.14 11.9 0.2 1.9 1 1 0 1 1 1 0 AAA domain Tir_receptor_N PF07490.11 gi|304313872|ref|YP_003849019.1| - 0.051 13.4 0.0 0.089 12.6 0.0 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus ATP_bind_1 PF03029.17 gi|304313872|ref|YP_003849019.1| - 0.15 11.8 2.3 0.38 10.5 0.1 2.6 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.6 gi|304313872|ref|YP_003849019.1| - 0.32 11.5 2.6 5.9 7.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain HMD PF03201.16 gi|304313873|ref|YP_003849020.1| - 2.1e-41 140.0 3.3 4e-41 139.1 3.3 1.5 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.15 gi|304313873|ref|YP_003849020.1| - 1.5e-05 25.2 0.5 8.5e-05 22.8 0.0 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|304313873|ref|YP_003849020.1| - 0.003 18.1 0.1 0.018 15.6 0.1 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent HTH_12 PF08461.10 gi|304313873|ref|YP_003849020.1| - 0.032 14.2 0.1 0.087 12.8 0.1 1.8 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain 3HCDH_N PF02737.18 gi|304313873|ref|YP_003849020.1| - 0.054 13.4 0.2 1.4 8.7 0.1 2.9 1 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|304313873|ref|YP_003849020.1| - 0.076 12.6 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain SK_channel PF03530.14 gi|304313873|ref|YP_003849020.1| - 0.18 11.8 0.5 0.37 10.8 0.2 1.6 2 0 0 2 2 2 0 Calcium-activated SK potassium channel SBBP PF06739.11 gi|304313874|ref|YP_003849021.1| - 4e-42 141.9 57.4 2.8e-09 36.8 3.4 8.8 8 0 0 8 8 8 7 Beta-propeller repeat CARDB PF07705.11 gi|304313874|ref|YP_003849021.1| - 6.3e-27 93.8 43.4 9.7e-06 25.8 0.3 10.4 7 3 3 10 10 10 8 CARDB PapC_N PF13954.6 gi|304313874|ref|YP_003849021.1| - 2e-07 31.1 3.4 12 5.9 0.0 7.7 7 2 2 9 9 9 0 PapC N-terminal domain fn3_3 PF14686.6 gi|304313874|ref|YP_003849021.1| - 7.7e-06 25.6 47.0 0.013 15.2 0.2 9.6 11 1 1 12 12 11 4 Polysaccharide lyase family 4, domain II CBM60 PF16841.5 gi|304313874|ref|YP_003849021.1| - 0.00046 20.5 11.3 2.9 8.4 0.0 7.3 8 0 0 8 8 8 1 Ca-dependent carbohydrate-binding module xylan-binding BetaGal_dom4_5 PF13364.6 gi|304313874|ref|YP_003849021.1| - 0.0016 19.0 11.6 2.3 8.8 0.0 6.8 7 1 0 7 7 6 1 Beta-galactosidase jelly roll domain DUF756 PF05506.12 gi|304313874|ref|YP_003849021.1| - 0.0025 18.7 20.1 1.4 9.9 0.0 8.6 8 3 1 10 10 10 1 Domain of unknown function (DUF756) Glyco_hydro_2 PF00703.21 gi|304313874|ref|YP_003849021.1| - 0.0061 17.2 0.7 16 6.2 0.0 4.8 5 0 0 5 5 4 0 Glycosyl hydrolases family 2 Reg_prop PF07494.11 gi|304313874|ref|YP_003849021.1| - 0.022 15.0 6.8 28 5.4 0.3 5.9 6 0 0 6 6 6 0 Two component regulator propeller fn3_5 PF06280.12 gi|304313874|ref|YP_003849021.1| - 0.022 15.5 17.9 3.9 8.2 0.0 7.7 5 2 4 9 9 9 0 Fn3-like domain DUF5122 PF17164.4 gi|304313874|ref|YP_003849021.1| - 0.025 14.9 12.0 0.057 13.7 0.2 5.2 5 0 0 5 5 4 0 Domain of unknown function (DUF5122) beta-propeller NHL PF01436.21 gi|304313874|ref|YP_003849021.1| - 0.087 12.9 2.4 1.4 9.1 0.0 3.9 4 0 0 4 4 3 0 NHL repeat GBS_Bsp-like PF08481.10 gi|304313874|ref|YP_003849021.1| - 0.13 12.4 11.6 96 3.2 0.0 7.6 9 1 1 10 10 9 0 GBS Bsp-like repeat DUF4307 PF14155.6 gi|304313874|ref|YP_003849021.1| - 0.36 10.7 2.9 19 5.1 0.0 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) DUF4140 PF13600.6 gi|304313874|ref|YP_003849021.1| - 2.4 8.7 7.6 50 4.4 0.0 5.7 6 1 1 7 7 7 0 N-terminal domain of unknown function (DUF4140) DUF4232 PF14016.6 gi|304313874|ref|YP_003849021.1| - 9.1 6.4 14.8 1.1 9.3 0.1 5.2 5 1 0 5 5 5 0 Protein of unknown function (DUF4232) TP_methylase PF00590.20 gi|304313875|ref|YP_003849022.1| - 1.1e-38 133.3 0.1 1.2e-38 133.2 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MMR_HSR1_C PF08438.10 gi|304313876|ref|YP_003849023.1| - 1.7e-38 131.6 0.0 3.3e-38 130.7 0.0 1.5 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|304313876|ref|YP_003849023.1| - 3.6e-22 78.6 0.0 5.9e-21 74.7 0.0 2.8 3 1 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|304313876|ref|YP_003849023.1| - 1.1e-13 51.1 0.0 2.4e-13 49.9 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|304313876|ref|YP_003849023.1| - 7.4e-08 32.1 0.0 3.7e-07 29.8 0.0 2.0 2 0 0 2 2 2 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|304313876|ref|YP_003849023.1| - 0.0073 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain LexA_DNA_bind PF01726.16 gi|304313876|ref|YP_003849023.1| - 0.18 11.6 0.0 1.4 8.7 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain E1-E2_ATPase PF00122.20 gi|304313877|ref|YP_003849024.1| - 4.3e-52 176.3 2.3 4.3e-52 176.3 2.3 2.8 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|304313877|ref|YP_003849024.1| - 7.5e-46 156.1 3.4 7.5e-46 156.1 3.4 2.2 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|304313877|ref|YP_003849024.1| - 7.8e-23 81.9 0.1 4.2e-22 79.5 0.1 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|304313877|ref|YP_003849024.1| - 5.7e-20 71.2 0.0 1.2e-19 70.2 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|304313877|ref|YP_003849024.1| - 2.5e-18 65.5 0.0 6e-18 64.3 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|304313877|ref|YP_003849024.1| - 2.4e-07 30.7 2.9 1.1e-06 28.6 1.6 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|304313877|ref|YP_003849024.1| - 1.4e-05 25.6 0.3 4.2e-05 24.0 0.3 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF2157 PF09925.9 gi|304313877|ref|YP_003849024.1| - 0.0058 16.4 5.6 0.033 14.0 0.0 3.2 3 0 0 3 3 3 1 Predicted membrane protein (DUF2157) Herpes_LMP1 PF05297.11 gi|304313877|ref|YP_003849024.1| - 0.074 12.2 0.2 0.16 11.2 0.2 1.5 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) OppC_N PF12911.7 gi|304313877|ref|YP_003849024.1| - 1.5 8.9 4.3 2.6 8.1 1.0 2.8 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|304313878|ref|YP_003849025.1| - 0.0056 16.4 0.0 0.0062 16.3 0.0 1.0 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF347 PF03988.12 gi|304313878|ref|YP_003849025.1| - 0.011 16.0 1.5 0.017 15.3 0.0 1.9 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) DUF202 PF02656.15 gi|304313878|ref|YP_003849025.1| - 0.011 16.2 0.1 0.014 15.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF4307 PF14155.6 gi|304313878|ref|YP_003849025.1| - 0.016 15.1 0.2 5.9 6.8 1.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF2207 PF09972.9 gi|304313878|ref|YP_003849025.1| - 0.023 13.5 0.0 0.025 13.4 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Stevor PF17410.2 gi|304313878|ref|YP_003849025.1| - 0.028 14.0 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame ATG27 PF09451.10 gi|304313878|ref|YP_003849025.1| - 0.039 13.8 0.1 0.051 13.4 0.1 1.3 1 1 0 1 1 1 0 Autophagy-related protein 27 ASFV_J13L PF05568.11 gi|304313878|ref|YP_003849025.1| - 0.045 13.5 0.8 0.082 12.7 0.8 1.4 1 0 0 1 1 1 0 African swine fever virus J13L protein DUF4690 PF15756.5 gi|304313878|ref|YP_003849025.1| - 0.07 13.7 0.4 0.085 13.5 0.4 1.3 1 1 0 1 1 1 0 Small Novel Rich in Cartilage DUF3742 PF12553.8 gi|304313878|ref|YP_003849025.1| - 0.13 12.4 1.3 0.92 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) ABC2_membrane_2 PF12679.7 gi|304313878|ref|YP_003849025.1| - 0.23 10.7 2.6 0.58 9.4 2.7 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF4972 PF16342.5 gi|304313878|ref|YP_003849025.1| - 0.24 11.1 0.1 0.24 11.1 0.1 1.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4972) Herpes_UL73 PF03554.13 gi|304313878|ref|YP_003849025.1| - 0.57 10.2 0.1 0.57 10.2 0.1 1.8 2 1 0 2 2 2 0 UL73 viral envelope glycoprotein DUF3149 PF11346.8 gi|304313878|ref|YP_003849025.1| - 3.4 7.3 9.2 0.38 10.4 2.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) DUF4051 PF13260.6 gi|304313878|ref|YP_003849025.1| - 4.6 7.1 9.2 0.19 11.4 2.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4051) TrkA_N PF02254.18 gi|304313879|ref|YP_003849026.1| - 4.9e-21 75.1 0.2 1.3e-20 73.8 0.2 1.7 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|304313879|ref|YP_003849026.1| - 1e-15 57.5 11.1 1.6e-15 56.8 11.1 1.3 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.21 gi|304313879|ref|YP_003849026.1| - 4.4e-14 52.1 1.3 1.1e-13 50.8 0.5 2.2 2 0 0 2 2 2 1 TrkA-C domain Ion_trans PF00520.31 gi|304313879|ref|YP_003849026.1| - 0.016 14.5 2.1 0.024 13.9 2.1 1.2 1 0 0 1 1 1 0 Ion transport protein Castor_Poll_mid PF06241.12 gi|304313879|ref|YP_003849026.1| - 0.14 12.1 0.1 0.45 10.5 0.1 1.8 2 0 0 2 2 2 0 Castor and Pollux, part of voltage-gated ion channel SfsA PF03749.13 gi|304313880|ref|YP_003849027.1| - 6.9e-44 149.1 0.0 9.4e-44 148.7 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|304313880|ref|YP_003849027.1| - 1.8e-21 76.1 0.1 3e-21 75.3 0.1 1.4 1 0 0 1 1 1 1 SfsA N-terminal OB domain NucS PF01939.16 gi|304313880|ref|YP_003849027.1| - 0.18 11.1 0.0 0.32 10.3 0.0 1.3 1 1 0 1 1 1 0 Endonuclease NucS Oxidored_nitro PF00148.19 gi|304313881|ref|YP_003849028.1| - 3.4e-23 82.0 0.0 5.2e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Peptidase_S66C PF17676.1 gi|304313881|ref|YP_003849028.1| - 0.007 16.9 0.1 0.014 15.9 0.1 1.6 1 1 0 1 1 1 1 LD-carboxypeptidase C-terminal domain NTP_transferase PF00483.23 gi|304313882|ref|YP_003849029.1| - 5.2e-28 98.3 0.0 9.7e-28 97.4 0.0 1.4 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|304313882|ref|YP_003849029.1| - 3.5e-08 34.0 0.0 5.3e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.18 gi|304313882|ref|YP_003849029.1| - 4.4e-08 33.2 0.3 8e-08 32.3 0.3 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.11 gi|304313882|ref|YP_003849029.1| - 3e-07 30.1 0.3 7.4e-07 28.8 0.1 1.7 2 0 0 2 2 2 1 Cupin domain Ectoine_synth PF06339.12 gi|304313882|ref|YP_003849029.1| - 0.00037 20.7 0.5 0.0006 20.0 0.5 1.2 1 0 0 1 1 1 1 Ectoine synthase AraC_binding PF02311.19 gi|304313882|ref|YP_003849029.1| - 0.011 15.7 0.1 0.021 14.7 0.1 1.4 1 0 0 1 1 1 0 AraC-like ligand binding domain DUF3979 PF13141.6 gi|304313882|ref|YP_003849029.1| - 0.084 13.1 0.5 1.9 8.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3979) GATase PF00117.28 gi|304313883|ref|YP_003849030.1| - 3.7e-26 92.1 0.0 4.3e-26 91.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|304313883|ref|YP_003849030.1| - 2.7e-07 30.6 0.0 6.4e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|304313883|ref|YP_003849030.1| - 3.1e-06 26.9 0.0 3.6e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|304313883|ref|YP_003849030.1| - 0.00017 21.4 0.7 0.0023 17.7 0.7 2.1 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|304313883|ref|YP_003849030.1| - 0.012 15.4 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family AIRS_C PF02769.22 gi|304313884|ref|YP_003849031.1| - 7.2e-19 68.4 1.5 1.6e-18 67.3 1.5 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|304313884|ref|YP_003849031.1| - 1.2e-07 32.2 1.4 4.2e-07 30.5 1.0 2.1 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AMP-binding PF00501.28 gi|304313886|ref|YP_003849033.1| - 2.7e-18 65.8 0.0 7e-18 64.4 0.0 1.5 1 1 1 2 2 2 1 AMP-binding enzyme SIS_2 PF13580.6 gi|304313886|ref|YP_003849033.1| - 0.015 15.3 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 SIS domain TruD PF01142.18 gi|304313887|ref|YP_003849034.1| - 7e-148 492.9 0.0 7.8e-148 492.7 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF126 PF01989.16 gi|304313888|ref|YP_003849035.1| - 5.1e-38 128.7 1.0 8.2e-38 128.1 1.0 1.3 1 0 0 1 1 1 1 Aconitase X swivel domain DUF5518 PF17647.1 gi|304313889|ref|YP_003849036.1| - 5.3e-10 39.5 22.6 1.1e-09 38.5 22.6 1.4 1 1 0 1 1 1 1 Family of unknown function (DUF5518) DUF3792 PF12670.7 gi|304313889|ref|YP_003849036.1| - 1.1 9.5 17.1 2 8.6 17.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3792) Amidohydro_1 PF01979.20 gi|304313891|ref|YP_003849038.1| - 6.8e-36 124.3 0.2 8.7e-36 123.9 0.2 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|304313891|ref|YP_003849038.1| - 2.7e-07 30.5 0.7 0.00078 19.0 0.1 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|304313892|ref|YP_003849039.1| - 2.2e-13 50.3 0.0 2.4e-13 50.1 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|304313892|ref|YP_003849039.1| - 1.9e-05 24.4 0.0 1.9e-05 24.4 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family E1-E2_ATPase PF00122.20 gi|304313893|ref|YP_003849040.1| - 6e-59 198.6 0.2 6e-59 198.6 0.2 2.8 3 0 0 3 3 3 2 E1-E2 ATPase Hydrolase PF00702.26 gi|304313893|ref|YP_003849040.1| - 1.8e-44 152.6 1.3 1.8e-44 152.6 1.3 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|304313893|ref|YP_003849040.1| - 3.7e-34 117.0 0.1 7.1e-16 58.4 0.1 2.9 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.7 gi|304313893|ref|YP_003849040.1| - 2.2e-05 24.9 0.2 0.0001 22.8 0.2 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Spore_YhcN_YlaJ PF09580.10 gi|304313893|ref|YP_003849040.1| - 0.00012 22.2 0.1 0.023 14.8 0.0 2.5 2 0 0 2 2 2 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Hydrolase_3 PF08282.12 gi|304313893|ref|YP_003849040.1| - 0.00086 19.1 0.6 0.016 14.9 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|304313893|ref|YP_003849040.1| - 0.019 15.0 0.0 0.073 13.2 0.0 2.0 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|304313893|ref|YP_003849040.1| - 0.025 14.7 0.1 1.3 9.0 0.0 2.8 3 1 0 3 3 3 0 Haloacid dehalogenase-like hydrolase FeS_assembly_P PF01883.19 gi|304313893|ref|YP_003849040.1| - 0.033 14.4 0.1 6.7 7.0 0.0 3.0 2 1 1 3 3 3 0 Iron-sulfur cluster assembly protein Tox-PL-2 PF15643.6 gi|304313893|ref|YP_003849040.1| - 0.16 12.1 0.1 18 5.5 0.0 2.4 2 0 0 2 2 2 0 Papain fold toxin 2 PCP_red PF08369.10 gi|304313893|ref|YP_003849040.1| - 0.19 12.0 0.2 0.52 10.6 0.2 1.7 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit PolC_DP2 PF03833.13 gi|304313894|ref|YP_003849041.1| - 0 1227.2 0.0 0 1223.6 0.0 2.0 1 1 0 1 1 1 1 DNA polymerase II large subunit DP2 Yqai PF09466.10 gi|304313894|ref|YP_003849041.1| - 0.02 15.2 0.8 0.081 13.2 0.1 2.2 2 0 0 2 2 2 0 Hypothetical protein Yqai zinc-ribbons_6 PF07191.12 gi|304313894|ref|YP_003849041.1| - 0.029 14.3 1.1 9.3 6.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbons HypA PF01155.19 gi|304313894|ref|YP_003849041.1| - 0.084 12.9 1.2 4.5 7.3 0.2 2.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nop10p PF04135.12 gi|304313894|ref|YP_003849041.1| - 0.11 12.6 1.8 0.33 11.0 0.3 2.5 3 0 0 3 3 3 0 Nucleolar RNA-binding protein, Nop10p family TackOD1 PF18551.1 gi|304313894|ref|YP_003849041.1| - 0.16 11.6 1.4 5.8 6.5 0.7 2.3 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 zinc_ribbon_4 PF13717.6 gi|304313894|ref|YP_003849041.1| - 8.7 6.4 10.3 5.6 7.0 1.2 3.5 3 0 0 3 3 3 0 zinc-ribbon domain Sec61_beta PF03911.16 gi|304313895|ref|YP_003849042.1| - 4e-16 58.7 0.0 4.5e-16 58.6 0.0 1.0 1 0 0 1 1 1 1 Sec61beta family Lyase_1 PF00206.20 gi|304313896|ref|YP_003849043.1| - 3e-55 187.8 0.1 4.6e-55 187.2 0.1 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|304313896|ref|YP_003849043.1| - 4.8e-21 75.1 0.7 4.4e-20 72.0 0.3 2.8 3 0 0 3 3 3 1 Adenylosuccinate lyase C-terminus FumaraseC_C PF10415.9 gi|304313896|ref|YP_003849043.1| - 2.7e-05 24.5 1.1 0.00072 19.9 0.1 2.8 2 0 0 2 2 2 1 Fumarase C C-terminus ASL_C PF08328.11 gi|304313896|ref|YP_003849043.1| - 0.0011 19.0 0.4 0.003 17.7 0.1 1.9 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal ASL_C2 PF14698.6 gi|304313896|ref|YP_003849043.1| - 0.0058 17.4 0.2 0.027 15.2 0.0 2.3 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal NRDD PF13597.6 gi|304313898|ref|YP_003849045.1| - 1.4e-160 535.8 0.0 1.8e-160 535.4 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.16 gi|304313898|ref|YP_003849045.1| - 3.5e-16 59.5 1.8 3.7e-07 30.6 0.1 2.6 1 1 1 2 2 2 2 ATP cone domain MecA_N PF05223.11 gi|304313898|ref|YP_003849045.1| - 0.2 11.9 0.2 0.43 10.9 0.2 1.5 1 0 0 1 1 1 0 NTF2-like N-terminal transpeptidase domain HTH_32 PF13565.6 gi|304313899|ref|YP_003849046.1| - 4.6e-18 65.6 0.4 1.7e-17 63.8 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.6 gi|304313899|ref|YP_003849046.1| - 1.9e-12 46.6 0.5 2.2e-11 43.2 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_29 PF13551.6 gi|304313899|ref|YP_003849046.1| - 2.7e-10 40.1 0.2 1.6e-09 37.6 0.0 2.2 3 0 0 3 3 3 1 Winged helix-turn helix HTH_23 PF13384.6 gi|304313899|ref|YP_003849046.1| - 3.1e-10 39.5 1.1 1.5e-09 37.4 0.1 2.5 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 gi|304313899|ref|YP_003849046.1| - 2.5e-08 33.9 1.1 5.3e-08 32.9 0.1 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.6 gi|304313899|ref|YP_003849046.1| - 0.00057 20.3 0.0 0.0011 19.5 0.0 1.5 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_17 PF12728.7 gi|304313899|ref|YP_003849046.1| - 0.0048 17.1 0.2 0.032 14.4 0.0 2.6 3 1 0 3 3 3 1 Helix-turn-helix domain DUF746 PF05344.11 gi|304313899|ref|YP_003849046.1| - 0.013 15.3 0.0 0.034 14.0 0.0 1.7 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_Tnp_Tc3_2 PF01498.18 gi|304313899|ref|YP_003849046.1| - 0.018 15.3 0.0 0.032 14.5 0.0 1.5 1 0 0 1 1 1 0 Transposase Gp-FAR-1 PF05823.12 gi|304313899|ref|YP_003849046.1| - 0.021 15.1 0.4 0.53 10.6 0.0 2.7 3 0 0 3 3 3 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) HTH_20 PF12840.7 gi|304313899|ref|YP_003849046.1| - 0.043 13.9 0.0 1.8 8.7 0.0 2.8 2 1 1 3 3 3 0 Helix-turn-helix domain GAD PF02938.14 gi|304313899|ref|YP_003849046.1| - 0.049 13.9 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 GAD domain MS_channel PF00924.18 gi|304313899|ref|YP_003849046.1| - 0.08 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel HTH_7 PF02796.15 gi|304313899|ref|YP_003849046.1| - 0.095 12.8 0.1 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_Tnp_IS630 PF01710.16 gi|304313899|ref|YP_003849046.1| - 0.15 12.2 3.2 0.21 11.6 1.0 2.4 1 1 1 2 2 2 0 Transposase Ribosomal_L12_N PF16320.5 gi|304313899|ref|YP_003849046.1| - 1.9 8.3 5.2 30 4.4 0.0 3.4 4 0 0 4 4 4 0 Ribosomal protein L7/L12 dimerisation domain DDE_3 PF13358.6 gi|304313900|ref|YP_003849047.1| - 1.7e-25 89.5 0.1 2e-25 89.2 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_1 PF03184.19 gi|304313900|ref|YP_003849047.1| - 6.1e-06 26.0 0.0 7e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.26 gi|304313900|ref|YP_003849047.1| - 0.014 15.6 0.0 0.034 14.3 0.0 1.6 2 0 0 2 2 2 0 Integrase core domain tRNA-synt_1f PF01921.18 gi|304313903|ref|YP_003849050.1| - 5.4e-132 440.1 0.0 9.7e-132 439.2 0.0 1.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|304313903|ref|YP_003849050.1| - 0.00019 20.3 0.0 0.00062 18.6 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (M) ThiC_Rad_SAM PF01964.18 gi|304313904|ref|YP_003849051.1| - 7.9e-183 608.0 0.9 8.9e-183 607.8 0.9 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family PfkB PF00294.24 gi|304313905|ref|YP_003849052.1| - 5.5e-61 206.5 0.0 6.2e-61 206.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HTH_1 PF00126.27 gi|304313906|ref|YP_003849053.1| - 1.8e-09 37.4 0.2 3.2e-09 36.6 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 gi|304313906|ref|YP_003849053.1| - 0.00021 21.0 0.0 0.00069 19.4 0.0 1.8 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain Dirigent PF03018.14 gi|304313906|ref|YP_003849053.1| - 0.033 14.0 0.1 0.052 13.3 0.1 1.3 1 0 0 1 1 1 0 Dirigent-like protein HTH_8 PF02954.19 gi|304313906|ref|YP_003849053.1| - 0.1 12.4 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family SIS PF01380.22 gi|304313907|ref|YP_003849054.1| - 3.4e-18 65.7 0.1 5e-18 65.2 0.1 1.2 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|304313907|ref|YP_003849054.1| - 1.8e-12 47.5 0.9 2.8e-08 33.9 0.4 2.2 1 1 1 2 2 2 2 SIS domain 40S_S4_C PF16121.5 gi|304313907|ref|YP_003849054.1| - 0.028 14.0 0.1 8.1 6.2 0.0 2.4 2 0 0 2 2 2 0 40S ribosomal protein S4 C-terminus DUF531 PF04407.12 gi|304313907|ref|YP_003849054.1| - 0.054 13.6 0.0 0.11 12.6 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF531) PRMT5 PF05185.16 gi|304313907|ref|YP_003849054.1| - 0.063 13.1 0.2 2.4 8.0 0.0 2.1 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase FdhD-NarQ PF02634.15 gi|304313908|ref|YP_003849055.1| - 1.8e-62 211.2 0.0 2e-62 210.9 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family 2Fe-2S_thioredx PF01257.19 gi|304313909|ref|YP_003849056.1| - 3.9e-49 166.2 0.0 4.7e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin DREV PF05219.12 gi|304313909|ref|YP_003849056.1| - 0.24 10.5 0.0 0.3 10.1 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase Complex1_51K PF01512.17 gi|304313910|ref|YP_003849057.1| - 5.8e-49 165.9 0.0 1e-48 165.1 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|304313910|ref|YP_003849057.1| - 1.8e-31 108.0 0.0 1.8e-31 108.0 0.0 3.3 3 0 0 3 3 3 2 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Fer4 PF00037.27 gi|304313910|ref|YP_003849057.1| - 2.5e-09 36.5 16.0 2e-05 24.2 3.4 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain SLBB PF10531.9 gi|304313910|ref|YP_003849057.1| - 3.1e-08 33.3 0.4 6.5e-08 32.3 0.4 1.6 1 0 0 1 1 1 1 SLBB domain Fer4_7 PF12838.7 gi|304313910|ref|YP_003849057.1| - 7.8e-07 29.6 10.5 7.8e-07 29.6 10.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304313910|ref|YP_003849057.1| - 2e-06 27.9 12.9 2e-06 27.9 12.9 2.8 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304313910|ref|YP_003849057.1| - 3.3e-06 27.1 10.4 3.3e-06 27.1 10.4 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304313910|ref|YP_003849057.1| - 4.7e-05 23.3 3.7 4.7e-05 23.3 3.7 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304313910|ref|YP_003849057.1| - 0.00013 21.9 9.4 0.00039 20.3 1.2 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304313910|ref|YP_003849057.1| - 0.0014 18.8 19.5 0.049 13.8 2.5 3.1 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304313910|ref|YP_003849057.1| - 0.0053 17.7 1.7 0.0053 17.7 1.7 3.1 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|304313910|ref|YP_003849057.1| - 1.7 9.2 14.0 6 7.5 2.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|304313910|ref|YP_003849057.1| - 8 7.0 20.0 1.1 9.8 0.7 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|304313911|ref|YP_003849058.1| - 1.5e-31 110.0 0.3 2.4e-31 109.3 0.3 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|304313911|ref|YP_003849058.1| - 4.3e-23 81.6 0.3 8.6e-23 80.7 0.0 1.6 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|304313911|ref|YP_003849058.1| - 1.5e-09 38.3 0.0 2.9e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|304313911|ref|YP_003849058.1| - 6.5e-08 32.7 0.0 1.4e-07 31.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain GP17 PF17420.2 gi|304313911|ref|YP_003849058.1| - 0.1 12.8 0.5 3.9 7.7 0.1 2.6 3 0 0 3 3 3 0 Superinfection exclusion gene product 17 MobB PF03205.14 gi|304313912|ref|YP_003849059.1| - 2.2e-25 89.1 0.0 3.4e-25 88.5 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.13 gi|304313912|ref|YP_003849059.1| - 7.6e-10 38.3 2.6 1.5e-09 37.3 2.6 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster NTPase_1 PF03266.15 gi|304313912|ref|YP_003849059.1| - 0.0014 18.6 0.1 0.0018 18.2 0.1 1.4 1 0 0 1 1 1 1 NTPase MeaB PF03308.16 gi|304313912|ref|YP_003849059.1| - 0.0066 15.5 0.1 0.0098 14.9 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB APS_kinase PF01583.20 gi|304313912|ref|YP_003849059.1| - 0.01 15.7 0.1 0.016 15.1 0.1 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_14 PF13173.6 gi|304313912|ref|YP_003849059.1| - 0.011 15.7 0.1 0.032 14.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|304313912|ref|YP_003849059.1| - 0.016 15.1 0.0 0.032 14.1 0.0 1.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea LpxK PF02606.14 gi|304313912|ref|YP_003849059.1| - 0.074 12.1 0.0 0.099 11.7 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_16 PF13191.6 gi|304313912|ref|YP_003849059.1| - 0.091 13.1 0.1 0.16 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA ATPase domain Molybdopterin PF00384.22 gi|304313913|ref|YP_003849060.1| - 8e-87 292.0 0.0 1e-86 291.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|304313913|ref|YP_003849060.1| - 2.5e-31 108.0 0.0 4.7e-31 107.1 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|304313913|ref|YP_003849060.1| - 3e-19 68.8 1.0 9.1e-19 67.2 1.0 1.9 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.6 gi|304313913|ref|YP_003849060.1| - 5e-19 68.1 0.1 3.3e-18 65.5 0.1 2.3 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|304313913|ref|YP_003849060.1| - 3.9e-12 45.5 0.1 3.9e-12 45.5 0.1 2.7 3 0 0 3 3 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4 PF00037.27 gi|304313913|ref|YP_003849060.1| - 1.9e-09 36.9 19.6 1.9e-06 27.5 2.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304313913|ref|YP_003849060.1| - 1e-08 35.6 11.9 1.1e-08 35.5 6.4 3.3 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|304313913|ref|YP_003849060.1| - 6e-08 32.5 0.4 6e-08 32.5 0.4 2.1 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_21 PF14697.6 gi|304313913|ref|YP_003849060.1| - 1.6e-07 31.4 5.8 1.6e-07 31.4 5.8 2.5 3 0 0 3 3 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304313913|ref|YP_003849060.1| - 6.1e-07 29.5 6.0 6.1e-07 29.5 6.0 3.0 2 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304313913|ref|YP_003849060.1| - 5.2e-06 26.3 11.7 7.6e-05 22.6 2.7 4.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304313913|ref|YP_003849060.1| - 2.9e-05 24.4 4.5 2.9e-05 24.4 4.5 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304313913|ref|YP_003849060.1| - 0.00074 20.4 12.3 0.042 14.8 6.1 2.9 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|304313913|ref|YP_003849060.1| - 0.0025 17.9 13.8 0.0025 17.9 13.8 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304313913|ref|YP_003849060.1| - 0.0051 16.8 10.3 0.011 15.8 1.7 4.4 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|304313913|ref|YP_003849060.1| - 0.016 15.4 6.4 1.1 9.5 1.9 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304313913|ref|YP_003849060.1| - 0.03 14.9 15.1 0.22 12.1 10.7 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|304313913|ref|YP_003849060.1| - 0.29 12.0 6.2 0.97 10.3 0.5 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304313913|ref|YP_003849060.1| - 0.42 11.2 11.2 3.2 8.4 3.1 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Enterotoxin_HS1 PF08090.11 gi|304313913|ref|YP_003849060.1| - 0.87 9.6 3.1 1.5 8.8 1.1 2.5 2 0 0 2 2 2 0 Heat stable E.coli enterotoxin 1 Fer4_15 PF13459.6 gi|304313913|ref|YP_003849060.1| - 7.2 7.4 12.2 1.6e+02 3.2 12.2 2.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4 PF00037.27 gi|304313914|ref|YP_003849061.1| - 4.6e-10 38.9 17.0 1.3e-05 24.8 5.8 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304313914|ref|YP_003849061.1| - 4.8e-08 33.5 20.8 1.6e-06 28.6 10.5 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304313914|ref|YP_003849061.1| - 1.8e-07 31.2 13.2 3.8e-07 30.1 13.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain HTH_3 PF01381.22 gi|304313914|ref|YP_003849061.1| - 1e-06 28.7 0.0 1.6e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|304313914|ref|YP_003849061.1| - 1.4e-06 27.9 0.1 2.7e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Fer4_16 PF13484.6 gi|304313914|ref|YP_003849061.1| - 1.3e-05 26.1 14.0 0.0048 17.8 1.9 2.4 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|304313914|ref|YP_003849061.1| - 1.3e-05 25.3 26.0 0.00022 21.3 13.8 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain HTH_38 PF13936.6 gi|304313914|ref|YP_003849061.1| - 2.7e-05 23.9 0.4 6.3e-05 22.7 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|304313914|ref|YP_003849061.1| - 5.8e-05 23.1 0.1 0.0001 22.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fer4_17 PF13534.6 gi|304313914|ref|YP_003849061.1| - 0.00017 22.1 11.2 0.016 15.7 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304313914|ref|YP_003849061.1| - 0.00035 20.6 14.9 0.021 15.0 2.5 2.6 2 1 1 3 3 3 3 4Fe-4S dicluster domain HTH_24 PF13412.6 gi|304313914|ref|YP_003849061.1| - 0.00052 19.5 0.0 0.00085 18.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_31 PF13560.6 gi|304313914|ref|YP_003849061.1| - 0.00053 20.3 0.0 0.00092 19.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|304313914|ref|YP_003849061.1| - 0.00057 19.7 0.1 0.0014 18.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|304313914|ref|YP_003849061.1| - 0.00069 19.6 0.1 0.0011 18.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.12 gi|304313914|ref|YP_003849061.1| - 0.0012 18.5 0.1 0.0051 16.5 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_37 PF13744.6 gi|304313914|ref|YP_003849061.1| - 0.0012 18.8 0.0 0.0025 17.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|304313914|ref|YP_003849061.1| - 0.0013 18.7 0.1 0.0023 17.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fer4_4 PF12800.7 gi|304313914|ref|YP_003849061.1| - 0.0021 18.4 16.9 0.016 15.7 3.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain HTH_29 PF13551.6 gi|304313914|ref|YP_003849061.1| - 0.0021 18.0 0.0 0.0042 17.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Fer4_6 PF12837.7 gi|304313914|ref|YP_003849061.1| - 0.0029 17.6 16.1 0.0029 17.6 2.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304313914|ref|YP_003849061.1| - 0.0033 17.4 20.6 0.13 12.5 4.8 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain DUF739 PF05339.11 gi|304313914|ref|YP_003849061.1| - 0.0037 17.4 0.0 0.0079 16.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF739) TnsD PF15978.5 gi|304313914|ref|YP_003849061.1| - 0.0072 15.4 0.1 0.0094 15.0 0.1 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_40 PF14493.6 gi|304313914|ref|YP_003849061.1| - 0.0074 16.7 0.1 0.013 16.0 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|304313914|ref|YP_003849061.1| - 0.0074 16.2 0.1 0.035 14.0 0.0 2.0 1 1 1 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_IclR PF09339.10 gi|304313914|ref|YP_003849061.1| - 0.011 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain CENP-B_N PF04218.13 gi|304313914|ref|YP_003849061.1| - 0.011 15.3 0.0 0.026 14.2 0.0 1.6 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain NUMOD1 PF07453.13 gi|304313914|ref|YP_003849061.1| - 0.013 15.7 0.2 0.023 15.0 0.2 1.4 1 0 0 1 1 1 0 NUMOD1 domain GerE PF00196.19 gi|304313914|ref|YP_003849061.1| - 0.021 14.4 0.1 0.049 13.2 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family MarR PF01047.22 gi|304313914|ref|YP_003849061.1| - 0.021 14.7 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 MarR family RepB PF07506.11 gi|304313914|ref|YP_003849061.1| - 0.037 14.1 0.0 0.055 13.6 0.0 1.3 1 1 0 1 1 1 0 RepB plasmid partitioning protein Fer4_8 PF13183.6 gi|304313914|ref|YP_003849061.1| - 0.045 14.2 1.1 0.045 14.2 1.1 2.8 2 2 1 3 3 3 0 4Fe-4S dicluster domain Sigma70_r4 PF04545.16 gi|304313914|ref|YP_003849061.1| - 0.052 13.1 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_NinH PF06322.11 gi|304313914|ref|YP_003849061.1| - 0.064 13.2 0.3 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 Phage NinH protein Fer4_3 PF12798.7 gi|304313914|ref|YP_003849061.1| - 0.067 14.2 3.1 0.067 14.2 3.1 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain HTH_36 PF13730.6 gi|304313914|ref|YP_003849061.1| - 0.088 12.8 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2285 PF10074.9 gi|304313914|ref|YP_003849061.1| - 0.13 12.9 0.0 0.2 12.3 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2285) Fer4_22 PF17179.4 gi|304313914|ref|YP_003849061.1| - 0.15 12.9 15.9 0.85 10.5 5.4 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|304313914|ref|YP_003849061.1| - 0.16 12.2 14.8 1.3 9.3 2.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304313914|ref|YP_003849061.1| - 0.31 11.6 17.3 0.65 10.6 1.9 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|304313914|ref|YP_003849061.1| - 8.6 7.2 18.0 0.81 10.5 2.4 2.7 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4 PF00037.27 gi|304313915|ref|YP_003849062.1| - 1.7e-54 179.6 91.0 1.6e-08 34.0 6.0 8.7 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304313915|ref|YP_003849062.1| - 4.8e-38 129.5 69.6 3e-12 46.9 10.1 5.0 4 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304313915|ref|YP_003849062.1| - 6.7e-31 105.1 94.6 2e-07 30.8 1.0 8.9 9 0 0 9 9 9 7 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304313915|ref|YP_003849062.1| - 2.2e-28 98.1 78.5 1.5e-07 31.4 14.7 8.0 4 3 4 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304313915|ref|YP_003849062.1| - 3.5e-27 94.3 75.3 1.2e-08 34.9 14.6 6.4 4 2 4 8 8 8 8 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304313915|ref|YP_003849062.1| - 4.5e-25 87.6 70.5 2.7e-07 30.7 12.6 5.9 2 2 7 9 9 9 9 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304313915|ref|YP_003849062.1| - 2.5e-24 86.0 72.0 0.00013 22.8 1.2 8.2 5 2 3 8 8 8 8 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|304313915|ref|YP_003849062.1| - 1.2e-23 81.6 77.3 0.00013 21.9 2.8 8.6 9 0 0 9 9 9 7 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304313915|ref|YP_003849062.1| - 3.2e-16 59.5 68.0 5.1e-05 23.6 10.1 6.5 4 1 4 8 8 8 7 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304313915|ref|YP_003849062.1| - 2.6e-09 36.9 95.3 0.006 17.0 5.0 8.9 8 1 1 9 9 9 7 4Fe-4S binding domain Fer4_17 PF13534.6 gi|304313915|ref|YP_003849062.1| - 2.8e-09 37.4 81.3 0.0079 16.7 11.4 7.1 3 3 6 9 9 9 6 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304313915|ref|YP_003849062.1| - 2.4e-08 34.4 87.7 0.044 14.3 3.8 9.0 8 1 1 9 9 9 7 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|304313915|ref|YP_003849062.1| - 0.0002 22.1 110.5 0.023 15.6 4.8 9.2 9 1 0 9 9 9 5 4Fe-4S binding domain ETF_QO PF05187.13 gi|304313915|ref|YP_003849062.1| - 0.0019 18.3 48.8 0.59 10.3 6.8 6.1 1 1 5 6 6 6 5 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|304313915|ref|YP_003849062.1| - 0.033 15.0 69.2 1.3 10.0 0.4 8.2 6 2 3 9 9 9 0 4Fe-4S dicluster domain zinc_ribbon_2 PF13240.6 gi|304313915|ref|YP_003849062.1| - 0.13 12.1 0.2 0.13 12.1 0.2 6.4 8 0 0 8 8 7 0 zinc-ribbon domain Fer4 PF00037.27 gi|304313916|ref|YP_003849063.1| - 2.9e-17 61.7 14.8 1.5e-08 34.1 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304313916|ref|YP_003849063.1| - 1.7e-13 50.9 18.0 1.3e-10 41.7 8.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304313916|ref|YP_003849063.1| - 6.1e-12 45.5 22.9 8.9e-09 35.3 12.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304313916|ref|YP_003849063.1| - 2.1e-11 44.6 7.2 4.2e-05 24.4 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|304313916|ref|YP_003849063.1| - 5.4e-11 42.1 15.5 9.9e-06 25.4 4.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|304313916|ref|YP_003849063.1| - 9.5e-10 38.5 19.8 1.8e-07 31.2 9.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304313916|ref|YP_003849063.1| - 5.9e-07 29.5 10.7 0.0035 17.4 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304313916|ref|YP_003849063.1| - 8.6e-07 28.7 13.6 0.0029 17.6 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|304313916|ref|YP_003849063.1| - 3.3e-06 27.6 19.3 0.0085 17.0 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304313916|ref|YP_003849063.1| - 7.7e-06 26.3 20.3 4.1e-05 23.9 9.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304313916|ref|YP_003849063.1| - 1e-05 25.6 12.9 0.00087 19.6 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|304313916|ref|YP_003849063.1| - 0.00011 22.6 11.4 0.0026 18.3 11.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|304313916|ref|YP_003849063.1| - 0.023 15.5 8.1 0.39 11.6 1.4 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304313916|ref|YP_003849063.1| - 0.5 11.0 13.9 2.6 8.6 1.8 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|304313916|ref|YP_003849063.1| - 3.5 8.4 16.3 3.6e+02 2.0 16.3 3.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|304313916|ref|YP_003849063.1| - 5.6 7.2 12.0 2.1 8.6 2.1 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Molydop_binding PF01568.21 gi|304313917|ref|YP_003849064.1| - 1.9e-18 66.5 0.0 2.2e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF1905 PF08922.11 gi|304313917|ref|YP_003849064.1| - 0.00064 19.7 0.2 0.0018 18.3 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1905) CDC48_N PF02359.18 gi|304313917|ref|YP_003849064.1| - 0.036 14.3 0.1 0.057 13.6 0.1 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain DUF192 PF02643.15 gi|304313917|ref|YP_003849064.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized ACR, COG1430 MazE_antitoxin PF04014.18 gi|304313917|ref|YP_003849064.1| - 0.13 12.2 0.0 0.38 10.7 0.0 1.9 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin Amidohydro_3 PF07969.11 gi|304313918|ref|YP_003849065.1| - 1e-102 345.1 0.4 1.2e-102 344.8 0.4 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|304313918|ref|YP_003849065.1| - 8.9e-08 31.8 0.0 0.00021 20.7 0.0 2.7 3 0 0 3 3 3 2 Amidohydrolase family GXGXG PF01493.19 gi|304313919|ref|YP_003849066.1| - 6.7e-10 38.9 39.2 1.5e-06 28.0 16.5 3.4 1 1 1 2 2 2 2 GXGXG motif Molybdopterin PF00384.22 gi|304313920|ref|YP_003849067.1| - 5.7e-18 65.1 0.0 1.8e-17 63.4 0.0 1.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase PcrB PF01884.17 gi|304313920|ref|YP_003849067.1| - 0.00014 21.4 0.0 0.00054 19.5 0.0 1.9 2 0 0 2 2 2 1 PcrB family TPP_enzyme_M PF00205.22 gi|304313920|ref|YP_003849067.1| - 0.0049 16.6 0.2 2.3 8.0 0.0 2.8 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, central domain Fer4_NifH PF00142.18 gi|304313921|ref|YP_003849068.1| - 4.4e-128 426.4 2.5 4.9e-128 426.3 2.5 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|304313921|ref|YP_003849068.1| - 1.6e-09 37.9 0.0 2.5e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|304313921|ref|YP_003849068.1| - 9.8e-06 25.6 0.6 6.1e-05 23.0 0.1 2.2 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|304313921|ref|YP_003849068.1| - 1.9e-05 24.3 0.3 0.0028 17.1 0.1 2.3 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|304313921|ref|YP_003849068.1| - 0.0058 15.9 0.2 0.0058 15.9 0.2 1.9 3 0 0 3 3 3 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|304313921|ref|YP_003849068.1| - 0.017 14.8 0.1 0.026 14.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain MHC_II_beta PF00969.19 gi|304313921|ref|YP_003849068.1| - 0.095 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Class II histocompatibility antigen, beta domain P-II PF00543.22 gi|304313922|ref|YP_003849069.1| - 9.3e-32 109.7 0.3 1e-31 109.5 0.3 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|304313922|ref|YP_003849069.1| - 0.0011 19.1 0.3 0.54 10.5 0.0 2.5 2 1 1 3 3 3 2 Cyclic-di-AMP receptor P-II PF00543.22 gi|304313923|ref|YP_003849070.1| - 3.5e-33 114.3 0.3 4.4e-33 113.9 0.3 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.19 gi|304313924|ref|YP_003849071.1| - 2e-123 412.1 0.0 2.2e-123 411.9 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|304313925|ref|YP_003849072.1| - 6.8e-115 384.0 0.0 7.7e-115 383.8 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.19 gi|304313926|ref|YP_003849073.1| - 1e-117 393.2 0.0 1.2e-117 393.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase UDPGP PF01704.18 gi|304313926|ref|YP_003849073.1| - 0.23 10.1 0.0 0.31 9.6 0.0 1.1 1 0 0 1 1 1 0 UTP--glucose-1-phosphate uridylyltransferase Oxidored_nitro PF00148.19 gi|304313927|ref|YP_003849074.1| - 7.5e-117 390.4 0.0 8.5e-117 390.2 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Nitro_FeMo-Co PF02579.17 gi|304313928|ref|YP_003849075.1| - 1.6e-15 57.2 0.1 1.9e-15 57.0 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Molybdopterin PF00384.22 gi|304313929|ref|YP_003849076.1| - 1.8e-55 188.7 0.0 3.5e-54 184.4 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|304313929|ref|YP_003849076.1| - 8.6e-11 41.9 0.0 2.6e-10 40.3 0.0 1.7 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|304313929|ref|YP_003849076.1| - 6.7e-09 35.6 1.7 1.2e-08 34.8 1.7 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF2097 PF09870.9 gi|304313930|ref|YP_003849077.1| - 3e-27 94.7 0.4 3.4e-27 94.5 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2097) NRD1_2 PF01995.16 gi|304313931|ref|YP_003849078.1| - 6.6e-157 519.9 0.0 5.1e-80 268.2 0.0 2.1 2 0 0 2 2 2 2 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|304313931|ref|YP_003849078.1| - 3.7e-31 106.9 3.3 8.6e-31 105.7 3.3 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|304313931|ref|YP_003849078.1| - 0.025 14.6 0.1 0.091 12.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_21 PF13276.6 gi|304313931|ref|YP_003849078.1| - 0.038 14.1 0.2 0.1 12.8 0.2 1.7 1 0 0 1 1 1 0 HTH-like domain Gln-synt_C PF00120.24 gi|304313932|ref|YP_003849079.1| - 2.9e-137 457.3 0.0 3.4e-137 457.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|304313932|ref|YP_003849079.1| - 1.4e-31 108.1 0.0 2.6e-31 107.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain ThiF PF00899.21 gi|304313933|ref|YP_003849080.1| - 3.3e-51 174.0 0.0 4.4e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|304313933|ref|YP_003849080.1| - 0.00073 19.8 0.3 0.007 16.6 0.3 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|304313933|ref|YP_003849080.1| - 0.0026 17.2 0.1 0.0041 16.5 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|304313933|ref|YP_003849080.1| - 0.0081 16.2 0.0 0.033 14.3 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|304313933|ref|YP_003849080.1| - 0.025 15.0 0.0 0.048 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|304313933|ref|YP_003849080.1| - 0.036 13.7 0.7 0.063 12.8 0.6 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Nitro_FeMo-Co PF02579.17 gi|304313933|ref|YP_003849080.1| - 0.098 13.0 0.1 0.21 11.9 0.1 1.5 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor DUF2099 PF09872.9 gi|304313935|ref|YP_003849082.1| - 3.7e-110 367.2 0.4 4.2e-110 367.0 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) CBS PF00571.28 gi|304313936|ref|YP_003849083.1| - 5.8e-29 100.3 6.1 7.5e-14 51.9 1.0 2.1 2 0 0 2 2 2 2 CBS domain Peptidase_S55 PF05580.12 gi|304313936|ref|YP_003849083.1| - 0.02 14.8 0.2 0.77 9.7 0.0 2.1 2 0 0 2 2 2 0 SpoIVB peptidase S55 CDC48_2 PF02933.17 gi|304313936|ref|YP_003849083.1| - 0.024 14.4 0.6 0.043 13.6 0.2 1.8 2 1 0 2 2 2 0 Cell division protein 48 (CDC48), domain 2 ThiC_Rad_SAM PF01964.18 gi|304313937|ref|YP_003849084.1| - 9.9e-190 630.7 0.2 1.1e-189 630.5 0.2 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Met_asp_mut_E PF06368.11 gi|304313937|ref|YP_003849084.1| - 0.11 11.0 0.1 1.8 6.9 0.0 2.3 2 0 0 2 2 2 0 Methylaspartate mutase E chain (MutE) Glutaredoxin PF00462.24 gi|304313938|ref|YP_003849085.1| - 2.7e-12 46.7 0.0 3.8e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|304313938|ref|YP_003849085.1| - 3.5e-07 30.4 0.0 4.5e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 gi|304313938|ref|YP_003849085.1| - 5.7e-07 29.9 0.0 7.4e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|304313938|ref|YP_003849085.1| - 0.0073 16.6 0.0 0.0091 16.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.6 gi|304313938|ref|YP_003849085.1| - 0.032 14.7 0.0 0.11 13.0 0.0 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain FeThRed_B PF02943.15 gi|304313939|ref|YP_003849086.1| - 2.3e-24 85.5 0.3 2.9e-24 85.1 0.3 1.1 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.15 gi|304313939|ref|YP_003849086.1| - 0.056 13.0 2.8 0.069 12.7 1.2 2.0 2 0 0 2 2 2 0 RecR protein Vpu PF00558.19 gi|304313939|ref|YP_003849086.1| - 0.096 12.5 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Vpu protein DUF1724 PF08350.10 gi|304313940|ref|YP_003849087.1| - 1.1e-11 44.7 0.1 2.2e-11 43.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.7 gi|304313940|ref|YP_003849087.1| - 0.0026 17.8 0.1 0.0057 16.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|304313940|ref|YP_003849087.1| - 0.012 15.4 0.9 0.022 14.6 0.9 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HxlR PF01638.17 gi|304313940|ref|YP_003849087.1| - 0.069 13.0 0.0 0.35 10.8 0.1 2.0 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DNA_ligase_A_M PF01068.21 gi|304313941|ref|YP_003849088.1| - 3.1e-58 196.8 0.0 5.5e-58 196.0 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|304313941|ref|YP_003849088.1| - 9.8e-39 133.4 0.7 2.8e-38 131.9 0.5 1.9 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|304313941|ref|YP_003849088.1| - 6.1e-19 68.5 0.0 1.4e-18 67.3 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|304313941|ref|YP_003849088.1| - 0.0011 19.3 0.0 0.0026 18.1 0.0 1.6 1 0 0 1 1 1 1 RNA ligase tRNA_anti-codon PF01336.25 gi|304313942|ref|YP_003849089.1| - 1.9e-11 43.7 0.0 2.6e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|304313942|ref|YP_003849089.1| - 1.2e-06 28.6 0.0 1.7e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4131 PF13567.6 gi|304313942|ref|YP_003849089.1| - 0.0015 18.2 0.0 0.002 17.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) RMI2 PF16100.5 gi|304313942|ref|YP_003849089.1| - 0.012 15.4 0.1 0.024 14.5 0.1 1.4 1 1 1 2 2 2 0 RecQ-mediated genome instability protein 2 Stn1 PF10451.9 gi|304313942|ref|YP_003849089.1| - 0.017 14.1 0.0 0.022 13.7 0.0 1.1 1 0 0 1 1 1 0 Telomere regulation protein Stn1 tRNA_anti-like PF12869.7 gi|304313942|ref|YP_003849089.1| - 0.055 13.1 0.0 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 tRNA_anti-like Pro_CA PF00484.19 gi|304313943|ref|YP_003849090.1| - 3e-20 73.1 0.3 1.9e-19 70.5 0.3 1.9 1 1 0 1 1 1 1 Carbonic anhydrase PMT_2 PF13231.6 gi|304313944|ref|YP_003849091.1| - 6.7e-08 32.9 24.5 6.7e-08 32.9 24.5 2.8 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PTPS_related PF10131.9 gi|304313944|ref|YP_003849091.1| - 0.0018 16.7 26.2 0.0018 16.7 26.2 2.0 1 1 0 2 2 2 1 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein Adeno_GP19K PF04881.13 gi|304313944|ref|YP_003849091.1| - 0.38 10.8 1.8 5 7.1 0.1 3.0 3 0 0 3 3 3 0 Adenovirus GP19K DUF3367 PF11847.8 gi|304313944|ref|YP_003849091.1| - 4.1 5.2 7.8 4.9 4.9 1.2 2.2 2 0 0 2 2 2 0 Alpha-(1->3)-arabinofuranosyltransferase PGM_PMM_I PF02878.16 gi|304313945|ref|YP_003849092.1| - 4.5e-43 146.3 0.0 9.9e-43 145.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|304313945|ref|YP_003849092.1| - 3.2e-32 111.2 0.0 6.3e-32 110.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|304313945|ref|YP_003849092.1| - 1.4e-28 99.4 0.0 2.9e-28 98.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|304313945|ref|YP_003849092.1| - 1.1e-10 41.6 0.2 3.1e-09 36.9 0.0 2.8 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_23 PF13489.6 gi|304313945|ref|YP_003849092.1| - 0.11 12.3 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain TPR_1 PF00515.28 gi|304313946|ref|YP_003849093.1| - 3.2e-61 200.8 4.1 3.5e-10 39.3 0.1 7.2 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|304313946|ref|YP_003849093.1| - 3.7e-54 176.5 10.5 1.2e-08 34.4 0.2 7.5 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|304313946|ref|YP_003849093.1| - 2.3e-51 171.2 1.8 9.4e-11 41.2 0.0 7.2 3 3 4 7 7 7 7 TPR repeat TPR_8 PF13181.6 gi|304313946|ref|YP_003849093.1| - 4.4e-41 135.7 5.2 1.5e-07 31.0 0.0 7.6 8 0 0 8 8 7 7 Tetratricopeptide repeat TPR_17 PF13431.6 gi|304313946|ref|YP_003849093.1| - 1.1e-36 122.5 5.6 2.4e-07 30.6 0.0 6.5 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|304313946|ref|YP_003849093.1| - 1.6e-35 121.5 9.3 5.3e-10 39.8 0.8 4.3 3 1 0 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|304313946|ref|YP_003849093.1| - 7e-31 104.3 16.7 6.9e-06 26.4 0.1 7.4 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|304313946|ref|YP_003849093.1| - 2.1e-29 101.8 8.8 1.6e-09 38.1 0.0 5.6 3 2 3 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|304313946|ref|YP_003849093.1| - 4.7e-27 94.1 12.1 8.3e-08 32.4 2.8 5.2 3 2 1 4 4 4 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|304313946|ref|YP_003849093.1| - 4.2e-23 79.6 11.7 0.0008 19.3 0.1 7.4 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|304313946|ref|YP_003849093.1| - 5e-22 77.8 14.5 1.8e-07 31.2 0.8 5.2 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_15 PF13429.6 gi|304313946|ref|YP_003849093.1| - 7.7e-13 48.3 4.5 1.1e-05 24.9 0.0 3.0 1 1 0 2 2 2 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|304313946|ref|YP_003849093.1| - 1.5e-12 47.6 0.0 0.00062 19.9 0.0 3.6 1 1 3 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|304313946|ref|YP_003849093.1| - 1.2e-11 44.2 0.3 0.0012 17.8 0.1 4.1 2 2 2 4 4 4 3 NMDA receptor-regulated protein 1 TPR_6 PF13174.6 gi|304313946|ref|YP_003849093.1| - 2.8e-10 40.2 4.9 1.2 9.9 0.0 6.7 7 0 0 7 7 6 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|304313946|ref|YP_003849093.1| - 5.8e-10 38.7 29.7 0.0045 16.8 0.6 7.9 8 1 1 9 9 8 4 Tetratricopeptide repeat BTAD PF03704.17 gi|304313946|ref|YP_003849093.1| - 2.3e-09 37.9 12.4 0.0044 17.4 0.0 3.8 2 1 1 4 4 3 3 Bacterial transcriptional activator domain MIT PF04212.18 gi|304313946|ref|YP_003849093.1| - 1.3e-08 34.8 2.6 9.2 6.4 0.0 6.3 6 0 0 6 6 6 0 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|304313946|ref|YP_003849093.1| - 2.8e-08 33.9 2.9 0.67 10.0 0.1 5.2 3 1 1 4 4 4 3 Domain of Unknown Function (DUF3856) TPR_4 PF07721.14 gi|304313946|ref|YP_003849093.1| - 3.7e-07 30.1 3.6 3.6 8.5 0.0 5.8 6 0 0 6 6 5 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|304313946|ref|YP_003849093.1| - 1.1e-06 28.6 7.3 1.7 8.8 0.0 6.4 7 0 0 7 7 7 2 Fis1 C-terminal tetratricopeptide repeat TPR_MalT PF17874.1 gi|304313946|ref|YP_003849093.1| - 1.1e-06 28.2 0.1 0.00036 20.0 0.6 3.1 2 1 1 3 3 3 1 MalT-like TPR region ASCH PF04266.14 gi|304313946|ref|YP_003849093.1| - 1.9e-06 28.4 0.2 4.3e-06 27.3 0.2 1.6 1 0 0 1 1 1 1 ASCH domain TPR_21 PF09976.9 gi|304313946|ref|YP_003849093.1| - 4.1e-06 26.6 0.1 3.2 7.4 0.0 4.9 1 1 4 5 5 5 2 Tetratricopeptide repeat-like domain ChAPs PF09295.10 gi|304313946|ref|YP_003849093.1| - 8.4e-06 25.0 0.0 0.052 12.5 0.0 2.1 1 1 1 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) TPR_20 PF14561.6 gi|304313946|ref|YP_003849093.1| - 4.5e-05 23.7 3.8 6.8 7.1 0.0 4.3 3 1 1 4 4 4 0 Tetratricopeptide repeat NRBF2_MIT PF17169.4 gi|304313946|ref|YP_003849093.1| - 0.00012 22.2 3.1 0.93 9.8 0.0 5.1 3 2 2 5 5 5 1 MIT domain of nuclear receptor-binding factor 2 TOM20_plant PF06552.12 gi|304313946|ref|YP_003849093.1| - 0.00019 21.2 0.7 0.075 12.8 0.0 4.3 1 1 2 5 5 5 1 Plant specific mitochondrial import receptor subunit TOM20 Coatomer_E PF04733.14 gi|304313946|ref|YP_003849093.1| - 0.0008 18.9 0.4 0.43 10.0 0.2 2.9 1 1 2 3 3 3 1 Coatomer epsilon subunit FAT PF02259.23 gi|304313946|ref|YP_003849093.1| - 0.0034 16.7 0.0 1.2 8.3 0.0 2.9 1 1 2 3 3 3 1 FAT domain SHNi-TPR PF10516.9 gi|304313946|ref|YP_003849093.1| - 0.0081 15.6 11.9 1.1 8.8 0.0 4.9 5 0 0 5 5 5 2 SHNi-TPR Wzy_C_2 PF11846.8 gi|304313946|ref|YP_003849093.1| - 0.022 14.7 0.4 3.6 7.5 0.0 3.0 2 1 1 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal PPTA PF01239.22 gi|304313946|ref|YP_003849093.1| - 0.024 14.4 1.4 17 5.3 0.0 3.9 4 0 0 4 4 4 0 Protein prenyltransferase alpha subunit repeat SRP_TPR_like PF17004.5 gi|304313946|ref|YP_003849093.1| - 0.033 14.2 0.2 5.8 7.0 0.0 3.4 2 2 1 3 3 3 0 Putative TPR-like repeat Sel1 PF08238.12 gi|304313946|ref|YP_003849093.1| - 0.038 14.7 0.9 3.3 8.5 0.0 3.3 3 0 0 3 3 3 0 Sel1 repeat PPR PF01535.20 gi|304313946|ref|YP_003849093.1| - 0.045 14.0 8.1 52 4.4 0.1 6.1 6 0 0 6 6 6 0 PPR repeat DUF4082 PF13313.6 gi|304313946|ref|YP_003849093.1| - 0.047 13.7 0.0 0.13 12.3 0.0 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4082) PDH PF02153.17 gi|304313946|ref|YP_003849093.1| - 0.23 10.4 0.0 0.47 9.4 0.0 1.4 1 0 0 1 1 1 0 Prephenate dehydrogenase Radical_SAM PF04055.21 gi|304313947|ref|YP_003849094.1| - 3.4e-21 76.4 0.0 5.2e-21 75.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|304313947|ref|YP_003849094.1| - 3.8e-14 53.1 0.0 5.9e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|304313947|ref|YP_003849094.1| - 3.3e-08 33.7 0.0 7.1e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain PilI PF10623.9 gi|304313947|ref|YP_003849094.1| - 0.1 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Plasmid conjugative transfer protein PilI Aminotran_1_2 PF00155.21 gi|304313948|ref|YP_003849095.1| - 3.4e-59 200.9 0.0 3.9e-59 200.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|304313948|ref|YP_003849095.1| - 3.7e-09 36.0 0.0 5.4e-06 25.6 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|304313948|ref|YP_003849095.1| - 1.3e-06 27.2 0.0 2e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|304313948|ref|YP_003849095.1| - 2.3e-06 26.7 0.0 1.3e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Allinase DUF433 PF04255.14 gi|304313948|ref|YP_003849095.1| - 0.05 13.5 0.4 9.1 6.2 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF433) DegT_DnrJ_EryC1 PF01041.17 gi|304313948|ref|YP_003849095.1| - 0.052 12.8 0.0 0.077 12.3 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Transketolase_C PF02780.20 gi|304313948|ref|YP_003849095.1| - 0.11 12.4 0.0 0.98 9.3 0.0 2.2 2 0 0 2 2 2 0 Transketolase, C-terminal domain Hexapep PF00132.24 gi|304313949|ref|YP_003849096.1| - 1.2e-14 53.3 12.0 1.8e-07 30.6 1.4 4.1 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|304313949|ref|YP_003849096.1| - 1.6e-06 27.8 13.7 0.0003 20.5 3.5 4.0 2 1 2 4 4 4 3 Hexapeptide repeat of succinyl-transferase HAS-barrel PF09378.10 gi|304313949|ref|YP_003849096.1| - 0.069 13.3 0.2 0.16 12.1 0.2 2.0 1 1 0 1 1 1 0 HAS barrel domain Fucokinase PF07959.12 gi|304313949|ref|YP_003849096.1| - 0.088 11.7 0.1 0.16 10.9 0.1 1.4 1 1 0 1 1 1 0 L-fucokinase DUF4954 PF16314.5 gi|304313949|ref|YP_003849096.1| - 0.2 9.7 2.0 0.21 9.7 1.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) NTP_transferase PF00483.23 gi|304313950|ref|YP_003849097.1| - 3.2e-44 151.4 0.0 4e-44 151.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|304313950|ref|YP_003849097.1| - 3.8e-19 67.6 31.5 4.5e-08 32.5 0.7 4.6 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|304313950|ref|YP_003849097.1| - 7.8e-15 55.6 0.0 1.1e-14 55.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|304313950|ref|YP_003849097.1| - 1.4e-07 31.2 24.9 0.0013 18.4 3.4 4.7 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|304313950|ref|YP_003849097.1| - 0.00021 21.1 0.0 0.00034 20.4 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|304313950|ref|YP_003849097.1| - 0.0013 17.0 4.0 0.0044 15.2 4.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|304313950|ref|YP_003849097.1| - 0.13 11.2 0.4 2.2 7.1 0.1 2.3 1 1 1 2 2 2 0 L-fucokinase PGM_PMM_I PF02878.16 gi|304313951|ref|YP_003849098.1| - 1.7e-43 147.6 0.0 2.7e-43 147.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|304313951|ref|YP_003849098.1| - 3.2e-28 98.4 0.1 7.4e-28 97.2 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|304313951|ref|YP_003849098.1| - 2.1e-19 69.8 0.0 4.3e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|304313951|ref|YP_003849098.1| - 1.1e-13 51.1 0.1 2.4e-13 50.0 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PhosphMutase PF10143.9 gi|304313952|ref|YP_003849099.1| - 9e-57 191.6 0.0 1.4e-56 191.0 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|304313952|ref|YP_003849099.1| - 2e-48 165.0 0.0 2.2e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|304313952|ref|YP_003849099.1| - 0.005 16.5 0.0 0.26 10.8 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Exonuc_VII_L PF02601.15 gi|304313952|ref|YP_003849099.1| - 0.2 11.2 0.1 0.36 10.3 0.1 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF92 PF01940.16 gi|304313953|ref|YP_003849100.1| - 4.9e-51 173.4 13.8 1e-50 172.4 13.8 1.5 1 1 0 1 1 1 1 Integral membrane protein DUF92 LMF1 PF06762.14 gi|304313953|ref|YP_003849100.1| - 0.084 12.0 0.2 0.074 12.2 0.2 1.1 1 0 0 1 1 1 0 Lipase maturation factor Ribosomal_S3Ae PF01015.18 gi|304313954|ref|YP_003849101.1| - 7.1e-67 224.9 4.6 8.2e-67 224.7 4.6 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Band_7 PF01145.25 gi|304313954|ref|YP_003849101.1| - 0.0025 17.9 0.1 0.0076 16.3 0.1 1.7 1 1 1 2 2 2 1 SPFH domain / Band 7 family PEP_mutase PF13714.6 gi|304313954|ref|YP_003849101.1| - 0.015 14.8 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Abhydro_lipase PF04083.16 gi|304313954|ref|YP_003849101.1| - 0.086 12.4 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region Nitro_FeMo-Co PF02579.17 gi|304313955|ref|YP_003849102.1| - 2.2e-17 63.2 0.0 2.5e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF4062 PF13271.6 gi|304313955|ref|YP_003849102.1| - 0.15 12.5 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4062) FMN_red PF03358.15 gi|304313956|ref|YP_003849103.1| - 1.7e-25 89.6 0.0 2.1e-25 89.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|304313956|ref|YP_003849103.1| - 0.00033 20.4 0.0 0.00054 19.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold PNP_UDP_1 PF01048.20 gi|304313957|ref|YP_003849104.1| - 1.2e-43 149.1 0.0 1.3e-43 148.9 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily RtcB PF01139.17 gi|304313958|ref|YP_003849105.1| - 2.8e-172 573.6 0.1 3.2e-172 573.4 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB HTH_17 PF12728.7 gi|304313958|ref|YP_003849105.1| - 0.17 12.1 0.0 12 6.2 0.0 2.9 2 0 0 2 2 2 0 Helix-turn-helix domain Archease PF01951.16 gi|304313959|ref|YP_003849106.1| - 2.5e-40 137.9 0.8 2.7e-40 137.8 0.8 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Sec62 PF03839.16 gi|304313960|ref|YP_003849107.1| - 0.29 10.6 0.3 0.31 10.5 0.3 1.0 1 0 0 1 1 1 0 Translocation protein Sec62 AAA_16 PF13191.6 gi|304313961|ref|YP_003849108.1| - 1.3e-07 32.2 0.0 4.5e-06 27.2 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|304313961|ref|YP_003849108.1| - 7e-06 26.4 0.0 1.5e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|304313961|ref|YP_003849108.1| - 0.018 14.5 0.1 0.13 11.7 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|304313961|ref|YP_003849108.1| - 0.021 14.8 0.0 0.069 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|304313961|ref|YP_003849108.1| - 0.027 13.9 0.0 0.049 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein TIP49_C PF17856.1 gi|304313961|ref|YP_003849108.1| - 0.045 13.9 0.0 0.17 12.0 0.0 2.0 2 0 0 2 2 2 0 TIP49 AAA-lid domain T2SSE PF00437.20 gi|304313961|ref|YP_003849108.1| - 0.05 12.7 0.0 0.092 11.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_35 PF14516.6 gi|304313961|ref|YP_003849108.1| - 0.14 10.9 0.1 0.97 8.2 0.1 1.9 2 0 0 2 2 2 0 AAA-like domain MAF_flag10 PF01973.18 gi|304313962|ref|YP_003849109.1| - 4.2e-37 127.5 0.0 5.2e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|304313962|ref|YP_003849109.1| - 0.061 13.4 0.0 0.081 13.0 0.0 1.3 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain cobW PF02492.19 gi|304313962|ref|YP_003849109.1| - 0.18 11.3 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Aminotran_5 PF00266.19 gi|304313963|ref|YP_003849110.1| - 1.8e-43 149.0 0.0 2e-43 148.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|304313963|ref|YP_003849110.1| - 0.054 12.0 0.2 0.15 10.6 0.1 1.8 1 1 1 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme TPP_enzyme_N PF02776.18 gi|304313964|ref|YP_003849111.1| - 3e-48 163.7 0.1 5.8e-48 162.7 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|304313964|ref|YP_003849111.1| - 1.3e-39 135.4 0.4 3.9e-39 133.9 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|304313964|ref|YP_003849111.1| - 3.7e-30 104.4 0.0 6.5e-30 103.7 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Band_7_1 PF13421.6 gi|304313964|ref|YP_003849111.1| - 0.069 12.8 0.0 2.4 7.8 0.0 2.3 2 0 0 2 2 2 0 SPFH domain-Band 7 family AMP-binding PF00501.28 gi|304313965|ref|YP_003849112.1| - 2.1e-100 336.3 0.0 2.5e-100 336.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|304313965|ref|YP_003849112.1| - 1.4e-27 96.5 0.6 2.9e-27 95.5 0.6 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|304313965|ref|YP_003849112.1| - 2.5e-19 68.9 2.0 2.5e-19 68.9 2.0 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus dUTPase PF00692.19 gi|304313966|ref|YP_003849113.1| - 2.4e-12 46.6 0.0 3.7e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 dUTPase Tautomerase PF01361.21 gi|304313967|ref|YP_003849114.1| - 2.9e-19 68.8 0.0 3e-19 68.7 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|304313967|ref|YP_003849114.1| - 1.1e-05 25.5 0.0 1.2e-05 25.4 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_3 PF14832.6 gi|304313967|ref|YP_003849114.1| - 7.3e-05 23.0 0.0 8.2e-05 22.8 0.0 1.0 1 0 0 1 1 1 1 Putative oxalocrotonate tautomerase enzyme RRF PF01765.19 gi|304313967|ref|YP_003849114.1| - 0.052 13.5 0.1 0.062 13.3 0.1 1.1 1 0 0 1 1 1 0 Ribosome recycling factor MIF PF01187.18 gi|304313967|ref|YP_003849114.1| - 0.15 12.4 0.0 0.16 12.3 0.0 1.1 1 0 0 1 1 1 0 Macrophage migration inhibitory factor (MIF) GAF_2 PF13185.6 gi|304313968|ref|YP_003849115.1| - 2.3e-18 66.8 0.0 4.2e-18 66.0 0.0 1.4 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.24 gi|304313968|ref|YP_003849115.1| - 7.4e-17 61.5 0.0 1.3e-16 60.8 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.26 gi|304313968|ref|YP_003849115.1| - 4.1e-11 43.6 0.0 6.3e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|304313968|ref|YP_003849115.1| - 5.4e-05 23.5 0.0 9.9e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.7 gi|304313968|ref|YP_003849115.1| - 0.039 14.0 0.1 0.097 12.7 0.1 1.7 1 0 0 1 1 1 0 PAS domain SRP54 PF00448.22 gi|304313969|ref|YP_003849116.1| - 9.3e-77 257.1 2.0 1.3e-76 256.6 2.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|304313969|ref|YP_003849116.1| - 3.6e-16 59.2 3.8 3.9e-16 59.0 2.2 1.9 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|304313969|ref|YP_003849116.1| - 5.5e-06 26.2 2.5 8.7e-06 25.6 2.5 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|304313969|ref|YP_003849116.1| - 1.6e-05 25.4 1.5 2.5e-05 24.7 0.2 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|304313969|ref|YP_003849116.1| - 9.3e-05 22.8 0.8 0.00021 21.6 0.8 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|304313969|ref|YP_003849116.1| - 0.00059 19.2 0.3 0.0011 18.3 0.3 1.5 1 0 0 1 1 1 1 Zeta toxin MeaB PF03308.16 gi|304313969|ref|YP_003849116.1| - 0.0022 17.0 1.7 0.0055 15.7 1.2 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|304313969|ref|YP_003849116.1| - 0.0039 17.6 1.4 0.015 15.7 0.4 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|304313969|ref|YP_003849116.1| - 0.004 17.2 2.5 0.011 15.8 1.2 2.3 2 1 0 2 2 1 1 50S ribosome-binding GTPase CbiA PF01656.23 gi|304313969|ref|YP_003849116.1| - 0.0086 16.1 0.4 0.22 11.6 0.0 2.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.6 gi|304313969|ref|YP_003849116.1| - 0.0088 16.2 0.5 0.025 14.7 0.2 2.0 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|304313969|ref|YP_003849116.1| - 0.01 15.6 0.1 0.018 14.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|304313969|ref|YP_003849116.1| - 0.012 15.3 0.2 0.075 12.7 0.0 2.3 3 0 0 3 3 3 0 Thymidylate kinase MobB PF03205.14 gi|304313969|ref|YP_003849116.1| - 0.012 15.5 0.8 0.37 10.7 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|304313969|ref|YP_003849116.1| - 0.016 15.5 1.2 0.15 12.4 0.1 2.4 2 1 0 2 2 2 0 AAA domain 6PF2K PF01591.18 gi|304313969|ref|YP_003849116.1| - 0.026 13.9 0.0 0.045 13.0 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase cobW PF02492.19 gi|304313969|ref|YP_003849116.1| - 0.03 13.9 2.8 0.093 12.3 2.8 1.8 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ResIII PF04851.15 gi|304313969|ref|YP_003849116.1| - 0.039 14.0 0.4 0.17 11.9 0.4 2.2 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit RsgA_GTPase PF03193.16 gi|304313969|ref|YP_003849116.1| - 0.049 13.5 0.3 0.27 11.1 0.2 2.3 1 1 1 2 2 2 0 RsgA GTPase NTPase_1 PF03266.15 gi|304313969|ref|YP_003849116.1| - 0.049 13.5 5.0 2.4 8.0 0.2 2.9 2 1 0 3 3 3 0 NTPase Helicase_RecD PF05127.14 gi|304313969|ref|YP_003849116.1| - 0.052 13.4 0.3 0.13 12.1 0.3 1.6 1 0 0 1 1 1 0 Helicase Torsin PF06309.11 gi|304313969|ref|YP_003849116.1| - 0.056 13.5 0.0 0.12 12.4 0.0 1.5 1 1 0 1 1 1 0 Torsin AAA_7 PF12775.7 gi|304313969|ref|YP_003849116.1| - 0.067 12.7 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|304313969|ref|YP_003849116.1| - 0.069 13.4 0.2 0.2 11.9 0.0 1.9 2 0 0 2 2 1 0 AAA domain APS_kinase PF01583.20 gi|304313969|ref|YP_003849116.1| - 0.07 13.0 0.0 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase DUF3530 PF12048.8 gi|304313969|ref|YP_003849116.1| - 0.93 8.8 3.1 9.6 5.5 3.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3530) LEA_1 PF03760.15 gi|304313969|ref|YP_003849116.1| - 1.2 9.8 4.3 0.79 10.4 1.2 2.2 2 0 0 2 2 2 0 Late embryogenesis abundant (LEA) group 1 TFIIF_alpha PF05793.12 gi|304313969|ref|YP_003849116.1| - 2.4 6.6 10.4 3.6 6.1 10.4 1.1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Prefoldin PF02996.17 gi|304313970|ref|YP_003849117.1| - 1e-28 99.7 6.8 1.5e-28 99.1 6.8 1.3 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|304313970|ref|YP_003849117.1| - 0.0011 19.0 14.6 0.02 14.8 14.2 2.4 1 1 0 1 1 1 1 Prefoldin subunit CdvA PF18822.1 gi|304313970|ref|YP_003849117.1| - 0.003 17.4 10.4 0.2 11.5 2.3 2.6 2 0 0 2 2 2 2 CdvA-like coiled-coil domain DUF1664 PF07889.12 gi|304313970|ref|YP_003849117.1| - 0.0066 16.5 9.4 0.035 14.1 0.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) SesA PF17107.5 gi|304313970|ref|YP_003849117.1| - 0.0069 16.6 2.7 1.1 9.5 0.2 2.2 2 0 0 2 2 2 1 N-terminal domain on NACHT_NTPase and P-loop NTPases Desmo_N PF06771.11 gi|304313970|ref|YP_003849117.1| - 0.009 16.3 0.2 0.097 13.0 0.0 2.1 2 0 0 2 2 2 1 Viral Desmoplakin N-terminus Nup54 PF13874.6 gi|304313970|ref|YP_003849117.1| - 0.015 15.4 4.1 0.022 14.9 2.0 2.1 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Phasin_2 PF09361.10 gi|304313970|ref|YP_003849117.1| - 0.02 15.2 3.6 0.46 10.8 0.1 2.8 2 2 0 2 2 2 0 Phasin protein NPV_P10 PF05531.12 gi|304313970|ref|YP_003849117.1| - 0.021 15.3 8.9 0.25 11.8 0.3 2.4 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF892 PF05974.12 gi|304313970|ref|YP_003849117.1| - 0.024 14.6 0.7 0.024 14.6 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) ERK-JNK_inhib PF15002.6 gi|304313970|ref|YP_003849117.1| - 0.043 13.5 0.1 0.043 13.5 0.1 2.0 2 0 0 2 2 2 0 ERK and JNK pathways, inhibitor Cob_adeno_trans PF01923.18 gi|304313970|ref|YP_003849117.1| - 0.047 13.8 0.2 0.047 13.8 0.2 2.0 1 1 1 2 2 2 0 Cobalamin adenosyltransferase DUF2524 PF10732.9 gi|304313970|ref|YP_003849117.1| - 0.068 13.5 8.1 0.8 10.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2524) Apolipoprotein PF01442.18 gi|304313970|ref|YP_003849117.1| - 0.07 13.0 6.6 0.36 10.7 0.6 2.3 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain BORCS7 PF16088.5 gi|304313970|ref|YP_003849117.1| - 0.12 12.6 7.3 0.45 10.8 0.1 2.8 2 1 1 3 3 3 0 BLOC-1-related complex sub-unit 7 DUF1319 PF07028.11 gi|304313970|ref|YP_003849117.1| - 0.16 12.2 0.2 0.16 12.2 0.2 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1319) FliD_N PF02465.18 gi|304313970|ref|YP_003849117.1| - 0.17 12.6 5.2 0.2 12.4 0.7 2.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus CK2S PF15011.6 gi|304313970|ref|YP_003849117.1| - 0.2 11.5 4.6 0.62 9.9 0.2 2.2 2 0 0 2 2 2 0 Casein Kinase 2 substrate CENP-F_leu_zip PF10473.9 gi|304313970|ref|YP_003849117.1| - 0.22 11.5 15.0 0.49 10.4 6.3 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 COG2 PF06148.11 gi|304313970|ref|YP_003849117.1| - 0.23 11.6 4.7 1.5 8.9 0.2 2.4 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3698 PF12479.8 gi|304313970|ref|YP_003849117.1| - 0.27 11.8 2.0 1 9.9 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3698) Nsp1_C PF05064.13 gi|304313970|ref|YP_003849117.1| - 0.28 11.0 0.1 0.28 11.0 0.1 2.3 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF948 PF06103.11 gi|304313970|ref|YP_003849117.1| - 0.32 11.3 3.8 1.7 9.0 0.2 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Borrelia_lipo_1 PF05714.11 gi|304313970|ref|YP_003849117.1| - 0.4 10.4 9.9 2.3 7.9 9.9 2.0 1 1 0 1 1 1 0 Borrelia burgdorferi virulent strain associated lipoprotein DUF4200 PF13863.6 gi|304313970|ref|YP_003849117.1| - 0.4 11.1 10.8 0.39 11.1 0.6 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) RasGAP_C PF03836.15 gi|304313970|ref|YP_003849117.1| - 0.41 10.8 7.9 9.5 6.4 4.4 2.6 2 1 0 2 2 2 0 RasGAP C-terminus WXG100 PF06013.12 gi|304313970|ref|YP_003849117.1| - 0.45 10.8 6.1 1.1 9.6 0.1 2.8 2 2 0 2 2 2 0 Proteins of 100 residues with WXG APG17 PF04108.12 gi|304313970|ref|YP_003849117.1| - 0.51 9.4 9.1 2.8 7.0 0.7 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF349 PF03993.12 gi|304313970|ref|YP_003849117.1| - 0.55 10.6 4.8 0.42 10.9 0.3 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) Prominin PF05478.11 gi|304313970|ref|YP_003849117.1| - 0.57 8.1 6.5 1.4 6.8 6.5 1.6 1 1 0 1 1 1 0 Prominin FlaC_arch PF05377.11 gi|304313970|ref|YP_003849117.1| - 0.62 10.5 10.6 2.1 8.8 0.7 2.8 3 1 0 3 3 2 0 Flagella accessory protein C (FlaC) DUF16 PF01519.16 gi|304313970|ref|YP_003849117.1| - 0.65 10.5 12.7 0.51 10.9 0.8 2.2 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF104 PF01954.16 gi|304313970|ref|YP_003849117.1| - 0.76 10.3 4.2 1.5 9.3 0.3 2.8 3 0 0 3 3 3 0 Protein of unknown function DUF104 Sec34 PF04136.15 gi|304313970|ref|YP_003849117.1| - 0.81 9.6 7.0 4.2 7.2 3.7 2.2 1 1 1 2 2 2 0 Sec34-like family Tup_N PF08581.10 gi|304313970|ref|YP_003849117.1| - 1 9.7 11.4 2.5 8.5 0.5 2.4 2 0 0 2 2 2 0 Tup N-terminal OmpH PF03938.14 gi|304313970|ref|YP_003849117.1| - 1.6 9.0 15.6 0.24 11.8 1.4 2.1 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) KxDL PF10241.9 gi|304313970|ref|YP_003849117.1| - 1.7 9.0 7.4 3.2 8.1 0.9 2.6 2 1 0 2 2 2 0 Uncharacterized conserved protein USP8_interact PF08941.10 gi|304313970|ref|YP_003849117.1| - 2.1 8.1 8.1 4.3 7.1 2.8 2.0 1 1 1 2 2 2 0 USP8 interacting YabA PF06156.13 gi|304313970|ref|YP_003849117.1| - 2.1 9.0 7.8 7 7.4 1.2 2.2 2 0 0 2 2 2 0 Initiation control protein YabA DUF724 PF05266.14 gi|304313970|ref|YP_003849117.1| - 2.2 8.1 9.1 4 7.2 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) dCache_2 PF08269.11 gi|304313970|ref|YP_003849117.1| - 2.5 7.2 6.9 0.8 8.8 0.2 2.0 2 0 0 2 2 2 0 Cache domain Tweety PF04906.13 gi|304313970|ref|YP_003849117.1| - 3.8 6.1 5.0 5.4 5.6 1.6 2.0 2 0 0 2 2 2 0 Tweety Mod_r PF07200.13 gi|304313970|ref|YP_003849117.1| - 4 7.5 10.6 18 5.4 5.7 2.1 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein HAUS6_N PF14661.6 gi|304313970|ref|YP_003849117.1| - 7.1 6.1 8.2 50 3.4 6.9 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DUF5320 PF17253.2 gi|304313970|ref|YP_003849117.1| - 7.5 7.7 6.9 14 6.8 0.9 2.8 2 1 1 3 3 3 0 Family of unknown function (DUF5320) Ribosomal_L18A PF01775.17 gi|304313971|ref|YP_003849118.1| - 2.9e-11 43.5 0.1 3.7e-11 43.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Smoothelin PF12510.8 gi|304313971|ref|YP_003849118.1| - 0.068 13.2 0.7 8 6.6 0.0 2.1 2 0 0 2 2 2 0 Smoothelin cytoskeleton protein eIF-6 PF01912.18 gi|304313972|ref|YP_003849119.1| - 1.3e-65 220.5 7.2 6.2e-64 215.0 5.4 1.4 1 1 1 2 2 2 2 eIF-6 family Mersacidin PF16934.5 gi|304313972|ref|YP_003849119.1| - 0.033 13.9 0.0 0.083 12.7 0.0 1.6 1 0 0 1 1 1 0 Two-component Enterococcus faecalis cytolysin (EFC) Ribosomal_L31e PF01198.19 gi|304313973|ref|YP_003849120.1| - 6.9e-17 61.5 1.4 7.9e-17 61.3 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Peptidase_C26 PF07722.13 gi|304313973|ref|YP_003849120.1| - 0.052 13.3 0.0 0.052 13.3 0.0 1.1 1 0 0 1 1 1 0 Peptidase C26 CsrA PF02599.16 gi|304313973|ref|YP_003849120.1| - 0.13 12.2 0.2 0.13 12.2 0.2 2.2 2 1 0 2 2 2 0 Global regulator protein family Ribosomal_L39 PF00832.20 gi|304313974|ref|YP_003849121.1| - 2.3e-21 75.1 14.9 2.8e-21 74.8 14.9 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Asn_synthase PF00733.21 gi|304313975|ref|YP_003849122.1| - 0.00039 20.2 0.0 0.00054 19.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|304313975|ref|YP_003849122.1| - 0.0082 15.7 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC dsDNA_bind PF01984.20 gi|304313976|ref|YP_003849123.1| - 1e-28 99.8 22.6 1.1e-28 99.7 22.6 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DNA_ligase_A_C PF04679.15 gi|304313976|ref|YP_003849123.1| - 0.041 14.5 0.7 1.4 9.6 0.0 2.2 1 1 1 2 2 2 0 ATP dependent DNA ligase C terminal region DUF945 PF06097.11 gi|304313976|ref|YP_003849123.1| - 1.4 7.9 9.2 1.6 7.7 9.2 1.2 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF945) ClpB_D2-small PF10431.9 gi|304313976|ref|YP_003849123.1| - 2.5 8.2 10.7 6.3 6.9 2.9 2.7 1 1 1 3 3 3 0 C-terminal, D2-small domain, of ClpB protein Ribosomal_S19e PF01090.19 gi|304313977|ref|YP_003849124.1| - 5.5e-58 194.5 0.0 6.2e-58 194.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|304313977|ref|YP_003849124.1| - 0.0032 17.3 0.0 0.15 11.9 0.0 2.2 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|304313977|ref|YP_003849124.1| - 0.0036 17.3 0.0 0.0054 16.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_DeoR PF08220.12 gi|304313977|ref|YP_003849124.1| - 0.0095 15.7 0.0 0.032 14.0 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HemN_C PF06969.16 gi|304313977|ref|YP_003849124.1| - 0.015 15.3 0.1 0.023 14.8 0.1 1.3 1 0 0 1 1 1 0 HemN C-terminal domain HTH_12 PF08461.10 gi|304313977|ref|YP_003849124.1| - 0.02 14.8 0.1 0.038 13.9 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain GntR PF00392.21 gi|304313977|ref|YP_003849124.1| - 0.047 13.3 0.1 0.1 12.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family CRS1_YhbY PF01985.21 gi|304313978|ref|YP_003849125.1| - 9.9e-14 51.3 0.7 1.1e-13 51.1 0.7 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain CUT PF02376.15 gi|304313978|ref|YP_003849125.1| - 0.037 14.2 0.0 0.052 13.7 0.0 1.2 1 0 0 1 1 1 0 CUT domain Rpr2 PF04032.16 gi|304313979|ref|YP_003849126.1| - 4.9e-16 58.8 0.4 7.9e-16 58.1 0.4 1.4 1 1 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain MazE_antitoxin PF04014.18 gi|304313979|ref|YP_003849126.1| - 0.0046 16.8 0.0 0.0082 16.1 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin TF_Zn_Ribbon PF08271.12 gi|304313979|ref|YP_003849126.1| - 0.0095 15.4 0.0 0.021 14.3 0.0 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|304313979|ref|YP_003849126.1| - 0.056 13.5 0.6 0.1 12.6 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L40e PF01020.17 gi|304313979|ref|YP_003849126.1| - 0.29 11.0 6.3 7.9 6.5 6.3 2.3 1 1 0 1 1 1 0 Ribosomal L40e family AAA_18 PF13238.6 gi|304313980|ref|YP_003849127.1| - 1.6e-22 80.4 0.0 2.1e-22 80.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|304313980|ref|YP_003849127.1| - 1.5e-05 25.4 0.1 3.2e-05 24.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|304313980|ref|YP_003849127.1| - 4.5e-05 23.8 0.5 0.00063 20.0 0.1 2.1 2 0 0 2 2 2 1 AAA domain dNK PF01712.19 gi|304313980|ref|YP_003849127.1| - 0.0034 17.3 0.1 0.11 12.4 0.1 2.1 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_22 PF13401.6 gi|304313980|ref|YP_003849127.1| - 0.013 15.8 0.1 0.031 14.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|304313980|ref|YP_003849127.1| - 0.014 14.4 0.4 0.042 12.8 0.1 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|304313980|ref|YP_003849127.1| - 0.02 14.8 0.1 0.043 13.7 0.0 1.6 2 0 0 2 2 2 0 NTPase CoaE PF01121.20 gi|304313980|ref|YP_003849127.1| - 0.026 14.2 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA PF00004.29 gi|304313980|ref|YP_003849127.1| - 0.028 14.8 0.1 0.11 12.9 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|304313980|ref|YP_003849127.1| - 0.12 12.8 0.1 0.23 11.9 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|304313980|ref|YP_003849127.1| - 0.12 12.4 0.0 0.32 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|304313980|ref|YP_003849127.1| - 0.13 12.4 0.0 0.83 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|304313980|ref|YP_003849127.1| - 0.14 11.6 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|304313980|ref|YP_003849127.1| - 0.14 12.5 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|304313980|ref|YP_003849127.1| - 0.15 11.8 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Sigma54_CBD PF04963.13 gi|304313980|ref|YP_003849127.1| - 0.19 11.6 0.1 2.9 7.7 0.1 2.1 1 1 1 2 2 2 0 Sigma-54 factor, core binding domain MMR_HSR1 PF01926.23 gi|304313980|ref|YP_003849127.1| - 0.2 11.8 0.0 0.64 10.1 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase Thi4 PF01946.17 gi|304313981|ref|YP_003849128.1| - 1.3e-99 332.2 0.4 1.6e-99 331.9 0.4 1.1 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|304313981|ref|YP_003849128.1| - 4.3e-10 39.5 0.4 7.5e-10 38.7 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|304313981|ref|YP_003849128.1| - 7.1e-07 29.1 4.1 0.00049 19.8 2.6 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|304313981|ref|YP_003849128.1| - 1.4e-06 28.5 3.9 3e-06 27.4 2.8 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|304313981|ref|YP_003849128.1| - 1.4e-05 24.4 5.1 0.0029 16.8 1.9 2.5 1 1 2 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|304313981|ref|YP_003849128.1| - 7.6e-05 22.1 0.1 8.8e-05 21.9 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|304313981|ref|YP_003849128.1| - 0.00038 19.8 0.3 0.00051 19.4 0.3 1.3 1 1 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.24 gi|304313981|ref|YP_003849128.1| - 0.0031 16.9 0.7 0.01 15.2 0.2 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase HI0933_like PF03486.14 gi|304313981|ref|YP_003849128.1| - 0.0048 15.6 1.5 0.008 14.9 1.5 1.3 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 gi|304313981|ref|YP_003849128.1| - 0.014 14.5 0.7 0.014 14.5 0.7 1.4 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|304313981|ref|YP_003849128.1| - 0.039 14.5 0.4 0.1 13.2 0.4 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|304313981|ref|YP_003849128.1| - 0.051 12.8 0.0 0.12 11.6 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase MMR_HSR1_Xtn PF16897.5 gi|304313982|ref|YP_003849129.1| - 6.6e-38 129.0 0.3 1.5e-37 127.8 0.3 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|304313982|ref|YP_003849129.1| - 5.3e-23 81.3 0.0 1.3e-22 80.0 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|304313982|ref|YP_003849129.1| - 3.9e-22 78.1 0.1 7e-22 77.2 0.1 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|304313982|ref|YP_003849129.1| - 1.5e-15 57.1 0.4 4.8e-15 55.4 0.0 1.9 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|304313982|ref|YP_003849129.1| - 1.8e-06 28.0 0.4 0.0043 17.0 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|304313982|ref|YP_003849129.1| - 0.00013 22.1 0.1 0.52 10.3 0.1 2.4 1 1 1 2 2 2 2 Dynamin family Arf PF00025.21 gi|304313982|ref|YP_003849129.1| - 0.00074 19.0 0.4 0.022 14.2 0.1 2.5 2 1 0 2 2 2 1 ADP-ribosylation factor family Roc PF08477.13 gi|304313982|ref|YP_003849129.1| - 0.0023 18.1 0.1 0.098 12.9 0.0 2.5 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_16 PF13191.6 gi|304313982|ref|YP_003849129.1| - 0.0062 16.9 0.1 0.016 15.6 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain GTP_EFTU PF00009.27 gi|304313982|ref|YP_003849129.1| - 0.0063 16.1 0.5 0.39 10.2 0.0 2.7 3 1 0 3 3 2 1 Elongation factor Tu GTP binding domain AAA_28 PF13521.6 gi|304313982|ref|YP_003849129.1| - 0.007 16.6 0.1 0.017 15.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AIG1 PF04548.16 gi|304313982|ref|YP_003849129.1| - 0.018 14.4 0.1 0.038 13.3 0.1 1.6 1 0 0 1 1 1 0 AIG1 family SRPRB PF09439.10 gi|304313982|ref|YP_003849129.1| - 0.039 13.4 0.0 0.074 12.5 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit ATP_bind_1 PF03029.17 gi|304313982|ref|YP_003849129.1| - 0.06 13.1 0.0 6.2 6.5 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|304313982|ref|YP_003849129.1| - 0.06 12.3 0.0 0.2 10.6 0.0 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|304313982|ref|YP_003849129.1| - 0.067 12.8 2.3 1.4 8.5 0.0 2.9 3 1 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|304313982|ref|YP_003849129.1| - 0.067 13.5 0.0 0.18 12.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain Ras PF00071.22 gi|304313982|ref|YP_003849129.1| - 0.095 12.3 0.2 0.85 9.2 0.0 2.3 2 1 0 2 2 2 0 Ras family YchF-GTPase_C PF06071.13 gi|304313982|ref|YP_003849129.1| - 0.11 12.7 0.0 0.45 10.7 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF933) KTI12 PF08433.10 gi|304313982|ref|YP_003849129.1| - 0.13 11.7 0.0 0.28 10.6 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF5446 PF17522.2 gi|304313982|ref|YP_003849129.1| - 0.18 12.0 0.8 0.5 10.6 0.8 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF5446) CBS PF00571.28 gi|304313983|ref|YP_003849130.1| - 1.6e-21 76.5 6.4 9.7e-13 48.4 0.2 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|304313983|ref|YP_003849130.1| - 0.023 14.9 1.3 2 8.8 0.2 3.0 1 1 1 2 2 2 0 Translation initiation factor IF-3, N-terminal domain STT3 PF02516.14 gi|304313984|ref|YP_003849131.1| - 9.7e-156 519.5 19.7 1.2e-155 519.2 19.7 1.1 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|304313984|ref|YP_003849131.1| - 4.6e-06 26.9 14.6 4.6e-06 26.9 14.6 3.2 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Topoisom_bac PF01131.20 gi|304313985|ref|YP_003849132.1| - 1.5e-117 393.1 0.0 2e-117 392.7 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|304313985|ref|YP_003849132.1| - 6.6e-30 102.6 19.0 1.5e-15 56.6 4.6 3.6 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|304313985|ref|YP_003849132.1| - 2.3e-12 47.0 0.1 1.1e-11 44.8 0.0 2.1 2 0 0 2 2 2 1 Toprim domain DNA_ligase_ZBD PF03119.16 gi|304313985|ref|YP_003849132.1| - 0.014 15.4 4.1 0.45 10.6 0.1 3.3 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Rubredoxin_2 PF18073.1 gi|304313985|ref|YP_003849132.1| - 0.1 12.3 8.2 3.1 7.6 0.1 3.4 3 0 0 3 3 3 0 Rubredoxin metal binding domain SAP PF02037.27 gi|304313985|ref|YP_003849132.1| - 0.16 11.7 1.0 5.5 6.9 0.1 2.5 2 0 0 2 2 2 0 SAP domain DZR PF12773.7 gi|304313985|ref|YP_003849132.1| - 0.36 10.9 7.3 11 6.2 7.1 2.6 1 1 0 1 1 1 0 Double zinc ribbon ADK_lid PF05191.14 gi|304313985|ref|YP_003849132.1| - 1.3 9.1 8.1 17 5.5 5.1 3.4 2 1 0 2 2 2 0 Adenylate kinase, active site lid DUF1272 PF06906.11 gi|304313985|ref|YP_003849132.1| - 1.5 9.0 5.7 28 4.9 3.6 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1272) Auto_anti-p27 PF06677.12 gi|304313985|ref|YP_003849132.1| - 2.3 8.4 7.1 1.1 9.4 0.6 2.9 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C2HC5 PF06221.13 gi|304313985|ref|YP_003849132.1| - 3.4 7.7 4.9 12 6.0 0.7 3.1 2 1 1 3 3 3 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.12 gi|304313985|ref|YP_003849132.1| - 4.5 6.9 7.5 3.3 7.3 0.3 3.4 3 0 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|304313985|ref|YP_003849132.1| - 8.6 6.6 10.7 84 3.4 0.0 3.8 2 1 0 2 2 2 0 Zinc ribbon domain HAD PF12710.7 gi|304313986|ref|YP_003849133.1| - 1.4e-20 74.5 4.1 2.4e-20 73.8 0.0 2.9 3 1 0 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|304313986|ref|YP_003849133.1| - 2.6e-19 70.4 0.5 2.6e-19 70.4 0.5 2.6 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|304313986|ref|YP_003849133.1| - 9.8e-10 38.6 16.2 1.5e-09 38.0 0.1 4.1 3 1 1 4 4 4 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|304313986|ref|YP_003849133.1| - 2.5e-08 34.2 0.7 2.5e-08 34.2 0.7 4.5 3 1 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|304313986|ref|YP_003849133.1| - 4.1e-08 32.9 2.6 1.9e-06 27.5 0.0 3.0 3 1 1 4 4 4 1 Putative Phosphatase NPV_P10 PF05531.12 gi|304313986|ref|YP_003849133.1| - 0.53 10.8 7.1 2.6 8.6 2.3 4.3 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Sec34 PF04136.15 gi|304313986|ref|YP_003849133.1| - 0.67 9.8 18.2 3.1 7.6 1.5 3.5 2 1 1 3 3 3 0 Sec34-like family Spc7 PF08317.11 gi|304313986|ref|YP_003849133.1| - 5.2 5.9 46.2 0.38 9.6 13.7 2.6 1 1 2 3 3 3 0 Spc7 kinetochore protein Prominin PF05478.11 gi|304313986|ref|YP_003849133.1| - 8.7 4.2 15.1 14 3.5 15.1 1.2 1 0 0 1 1 1 0 Prominin Laminin_II PF06009.12 gi|304313986|ref|YP_003849133.1| - 9.8 6.2 26.2 0.39 10.7 4.2 3.7 3 1 0 4 4 4 0 Laminin Domain II TBP PF00352.21 gi|304313987|ref|YP_003849134.1| - 6.8e-60 199.0 0.0 1.5e-29 101.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|304313987|ref|YP_003849134.1| - 2e-06 27.8 0.0 0.028 14.6 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Trans_coact PF16805.5 gi|304313987|ref|YP_003849134.1| - 0.035 14.2 0.0 2.6 8.2 0.0 2.3 2 0 0 2 2 2 0 Phage late-transcription coactivator T4bSS_IcmS PF12608.8 gi|304313987|ref|YP_003849134.1| - 0.071 13.4 0.0 13 6.2 0.0 2.1 2 0 0 2 2 2 0 Type IVb secretion, IcmS, effector-recruitment Arm-DNA-bind_2 PF12167.8 gi|304313988|ref|YP_003849135.1| - 0.047 13.6 0.0 0.97 9.4 0.0 2.6 2 1 1 3 3 3 0 Arm DNA-binding domain Babuvirus_MP PF07234.11 gi|304313988|ref|YP_003849135.1| - 0.061 13.5 0.1 0.081 13.1 0.1 1.2 1 0 0 1 1 1 0 Movement and RNA silencing protein CYTH PF01928.21 gi|304313989|ref|YP_003849136.1| - 5.9e-38 130.6 1.4 6.6e-38 130.4 1.4 1.0 1 0 0 1 1 1 1 CYTH domain Glyoxalase_6 PF18029.1 gi|304313989|ref|YP_003849136.1| - 0.06 14.1 0.3 12 6.8 0.1 2.2 1 1 1 2 2 2 0 Glyoxalase-like domain DPPIV_rep PF18811.1 gi|304313989|ref|YP_003849136.1| - 0.091 12.7 0.2 0.22 11.5 0.2 1.7 1 0 0 1 1 1 0 Dipeptidyl peptidase IV (DPP IV) low complexity region HMGL-like PF00682.19 gi|304313990|ref|YP_003849137.1| - 2.8e-82 276.2 0.4 3.7e-82 275.9 0.4 1.1 1 0 0 1 1 1 1 HMGL-like HTH_22 PF13309.6 gi|304313990|ref|YP_003849137.1| - 0.0019 18.2 0.0 0.0067 16.5 0.0 2.0 1 0 0 1 1 1 1 HTH domain AP_endonuc_2 PF01261.24 gi|304313990|ref|YP_003849137.1| - 0.095 12.1 0.2 18 4.7 0.0 3.2 2 1 1 3 3 3 0 Xylose isomerase-like TIM barrel Aconitase PF00330.20 gi|304313991|ref|YP_003849138.1| - 8.5e-98 328.3 2.4 1.2e-95 321.2 2.4 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|304313991|ref|YP_003849138.1| - 0.11 11.1 0.0 0.28 9.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF521) DUF98 PF01947.16 gi|304313992|ref|YP_003849139.1| - 1.4e-36 125.7 0.0 1.9e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase UTRA PF07702.13 gi|304313992|ref|YP_003849139.1| - 1.9e-08 34.2 0.1 2.6e-08 33.8 0.1 1.2 1 0 0 1 1 1 1 UTRA domain Chor_lyase PF04345.13 gi|304313992|ref|YP_003849139.1| - 0.00048 19.8 0.0 0.00059 19.5 0.0 1.1 1 0 0 1 1 1 1 Chorismate lyase XPG_I PF00867.18 gi|304313993|ref|YP_003849140.1| - 1e-27 96.3 0.0 2.1e-27 95.3 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|304313993|ref|YP_003849140.1| - 1.4e-15 57.5 0.0 2.2e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|304313993|ref|YP_003849140.1| - 0.0011 19.5 0.1 0.0023 18.5 0.1 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold TetR_C_24 PF17932.1 gi|304313993|ref|YP_003849140.1| - 0.042 14.1 0.6 0.077 13.3 0.6 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain AAA_12 PF13087.6 gi|304313994|ref|YP_003849141.1| - 4e-55 186.5 0.0 7.6e-55 185.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|304313994|ref|YP_003849141.1| - 5.5e-54 183.7 0.0 9.9e-54 182.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|304313994|ref|YP_003849141.1| - 1.2e-13 51.3 0.0 1e-08 35.2 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|304313994|ref|YP_003849141.1| - 3.5e-07 30.7 0.0 2.6e-06 27.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|304313994|ref|YP_003849141.1| - 5.7e-06 26.2 0.0 0.65 9.7 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase Helicase_RecD PF05127.14 gi|304313994|ref|YP_003849141.1| - 7e-05 22.8 0.8 0.017 15.0 0.0 2.4 1 1 1 2 2 2 2 Helicase AAA_22 PF13401.6 gi|304313994|ref|YP_003849141.1| - 0.00019 21.7 0.0 0.0011 19.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain PIF1 PF05970.14 gi|304313994|ref|YP_003849141.1| - 0.00033 20.0 0.0 0.0067 15.6 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA_16 PF13191.6 gi|304313994|ref|YP_003849141.1| - 0.00043 20.7 0.0 0.0012 19.3 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|304313994|ref|YP_003849141.1| - 0.0015 17.5 0.0 0.0029 16.6 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Phe_tRNA-synt_N PF02912.18 gi|304313994|ref|YP_003849141.1| - 0.0017 18.2 0.3 0.0042 17.0 0.3 1.6 1 0 0 1 1 1 1 Aminoacyl tRNA synthetase class II, N-terminal domain ResIII PF04851.15 gi|304313994|ref|YP_003849141.1| - 0.0024 17.9 0.0 0.013 15.5 0.0 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|304313994|ref|YP_003849141.1| - 0.0058 15.7 0.1 0.02 14.0 0.0 1.9 2 0 0 2 2 2 1 Type II/IV secretion system protein UvrD-helicase PF00580.21 gi|304313994|ref|YP_003849141.1| - 0.016 14.7 0.1 0.071 12.6 0.0 1.9 1 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain UvrD_C_2 PF13538.6 gi|304313994|ref|YP_003849141.1| - 0.038 13.8 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain Sigma54_activat PF00158.26 gi|304313994|ref|YP_003849141.1| - 0.058 13.1 0.0 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF2119 PF09892.9 gi|304313995|ref|YP_003849142.1| - 1.9e-71 239.4 0.0 2.1e-71 239.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) AdoHcyase PF05221.17 gi|304313996|ref|YP_003849143.1| - 3.7e-60 203.6 0.0 1.8e-32 112.7 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|304313996|ref|YP_003849143.1| - 4.2e-53 179.7 1.0 7.8e-53 178.8 1.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|304313996|ref|YP_003849143.1| - 7.4e-11 41.7 0.2 1.3e-10 40.9 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|304313996|ref|YP_003849143.1| - 2.7e-09 36.8 0.1 5e-09 35.9 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|304313996|ref|YP_003849143.1| - 0.0017 18.9 0.2 0.0044 17.6 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|304313996|ref|YP_003849143.1| - 0.0062 15.9 1.0 0.012 14.9 1.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|304313996|ref|YP_003849143.1| - 0.0095 16.2 0.1 0.038 14.2 0.1 2.1 1 1 0 1 1 1 1 TrkA-N domain THF_DHG_CYH_C PF02882.19 gi|304313996|ref|YP_003849143.1| - 0.013 14.9 1.0 0.045 13.1 1.0 1.8 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain zf-RNPHF PF08080.12 gi|304313996|ref|YP_003849143.1| - 0.13 12.2 1.3 0.25 11.3 1.3 1.4 1 0 0 1 1 1 0 RNPHF zinc finger GBS_Bsp-like PF08481.10 gi|304313997|ref|YP_003849144.1| - 0.22 11.7 2.0 26 5.0 0.0 4.0 3 1 2 5 5 5 0 GBS Bsp-like repeat DUF3177 PF11375.8 gi|304313997|ref|YP_003849144.1| - 0.26 11.1 9.2 2.1 8.1 0.1 3.9 2 2 3 5 5 5 0 Protein of unknown function (DUF3177) SYCP2_SLD PF18584.1 gi|304313997|ref|YP_003849144.1| - 0.77 10.0 10.2 1.6 9.0 0.1 3.8 3 1 1 4 4 4 0 Synaptonemal complex 2 Spt16M-like domain Myotoxins PF00819.17 gi|304313997|ref|YP_003849144.1| - 1.4 9.3 4.2 14 6.0 0.1 3.9 3 1 2 5 5 5 0 Myotoxin, crotamine WVELL PF14043.6 gi|304313997|ref|YP_003849144.1| - 7.3 6.5 8.4 18 5.2 0.2 4.1 4 1 0 5 5 5 0 WVELL protein AAA PF00004.29 gi|304313998|ref|YP_003849145.1| - 3.1e-100 331.8 0.0 8.6e-50 168.6 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|304313998|ref|YP_003849145.1| - 1.3e-36 124.1 1.5 8.3e-19 67.1 0.2 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|304313998|ref|YP_003849145.1| - 5.6e-33 113.0 0.4 6.8e-30 103.1 0.3 3.2 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|304313998|ref|YP_003849145.1| - 1.3e-17 64.4 0.0 7.4e-09 35.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|304313998|ref|YP_003849145.1| - 1.6e-17 63.1 1.2 4.9e-17 61.5 0.4 2.3 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|304313998|ref|YP_003849145.1| - 1.2e-13 51.8 0.1 5.7e-06 26.8 0.0 3.6 2 1 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.12 gi|304313998|ref|YP_003849145.1| - 2.2e-13 50.2 0.1 3.2e-06 27.0 0.0 3.0 3 1 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|304313998|ref|YP_003849145.1| - 2.2e-11 44.1 0.0 3e-05 24.2 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.6 gi|304313998|ref|YP_003849145.1| - 3.8e-11 43.4 0.4 0.011 16.0 0.0 4.0 2 2 1 4 4 4 2 AAA domain TIP49 PF06068.13 gi|304313998|ref|YP_003849145.1| - 1.2e-10 41.2 0.0 0.0002 20.7 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|304313998|ref|YP_003849145.1| - 3.4e-10 40.1 0.0 0.00016 21.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|304313998|ref|YP_003849145.1| - 3.1e-09 36.9 1.7 0.0054 16.7 0.2 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|304313998|ref|YP_003849145.1| - 1.7e-07 31.1 0.6 0.016 14.9 0.0 3.5 3 2 0 3 3 3 2 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|304313998|ref|YP_003849145.1| - 4.2e-07 29.4 0.1 0.0068 15.7 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin Mg_chelatase PF01078.21 gi|304313998|ref|YP_003849145.1| - 1.8e-06 27.5 0.3 0.034 13.5 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|304313998|ref|YP_003849145.1| - 2e-06 27.7 0.0 0.056 13.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|304313998|ref|YP_003849145.1| - 3.3e-06 26.9 0.0 0.086 12.6 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|304313998|ref|YP_003849145.1| - 4.9e-06 26.5 0.0 0.042 13.7 0.0 3.3 2 2 1 3 3 3 2 Bacterial dnaA protein ATPase PF06745.13 gi|304313998|ref|YP_003849145.1| - 6.3e-06 25.7 1.5 0.17 11.2 0.0 3.9 3 1 0 4 4 3 2 KaiC AAA_28 PF13521.6 gi|304313998|ref|YP_003849145.1| - 7.3e-06 26.3 0.0 0.15 12.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|304313998|ref|YP_003849145.1| - 8.5e-06 26.1 0.0 0.18 12.2 0.0 2.7 2 0 0 2 2 2 2 RNA helicase TsaE PF02367.17 gi|304313998|ref|YP_003849145.1| - 2.2e-05 24.5 0.0 0.23 11.5 0.0 2.6 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Viral_helicase1 PF01443.18 gi|304313998|ref|YP_003849145.1| - 2.4e-05 24.2 0.0 0.04 13.7 0.0 2.2 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.6 gi|304313998|ref|YP_003849145.1| - 2.9e-05 24.6 0.0 0.39 11.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|304313998|ref|YP_003849145.1| - 3.2e-05 23.5 0.0 0.19 11.2 0.0 2.8 3 0 0 3 3 2 2 P-loop containing dynein motor region DUF815 PF05673.13 gi|304313998|ref|YP_003849145.1| - 3.6e-05 23.1 0.0 0.092 11.9 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|304313998|ref|YP_003849145.1| - 4.1e-05 23.0 0.0 0.23 10.6 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.27 gi|304313998|ref|YP_003849145.1| - 4.8e-05 23.9 0.0 0.18 12.3 0.0 2.6 2 0 0 2 2 2 2 ABC transporter NB-ARC PF00931.22 gi|304313998|ref|YP_003849145.1| - 5.2e-05 22.6 0.0 0.32 10.1 0.0 2.6 3 0 0 3 3 2 2 NB-ARC domain AAA_24 PF13479.6 gi|304313998|ref|YP_003849145.1| - 8.6e-05 22.3 0.0 0.15 11.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|304313998|ref|YP_003849145.1| - 0.00012 21.7 2.1 12 5.4 0.1 4.5 4 0 0 4 4 4 0 AAA domain NACHT PF05729.12 gi|304313998|ref|YP_003849145.1| - 0.00016 21.6 1.0 0.89 9.5 0.1 3.3 4 0 0 4 4 3 2 NACHT domain PhoH PF02562.16 gi|304313998|ref|YP_003849145.1| - 0.0002 20.9 0.3 0.44 10.0 0.0 2.8 2 0 0 2 2 2 2 PhoH-like protein AAA_11 PF13086.6 gi|304313998|ref|YP_003849145.1| - 0.00051 19.9 0.0 0.24 11.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|304313998|ref|YP_003849145.1| - 0.0016 18.2 1.5 1.2 8.8 0.0 2.9 3 0 0 3 3 3 1 AAA domain Vps4_C PF09336.10 gi|304313998|ref|YP_003849145.1| - 0.0027 17.7 0.4 0.15 12.0 0.2 2.9 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain Parvo_NS1 PF01057.17 gi|304313998|ref|YP_003849145.1| - 0.0032 16.6 0.1 1.4 8.0 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 CPT PF07931.12 gi|304313998|ref|YP_003849145.1| - 0.0047 16.8 0.2 2.3 8.0 0.0 2.9 2 1 1 3 3 3 1 Chloramphenicol phosphotransferase-like protein Torsin PF06309.11 gi|304313998|ref|YP_003849145.1| - 0.0057 16.8 0.0 2.6 8.1 0.0 2.4 2 0 0 2 2 2 1 Torsin AAA_19 PF13245.6 gi|304313998|ref|YP_003849145.1| - 0.0064 16.8 1.2 2.9 8.2 0.0 2.9 2 1 1 3 3 2 1 AAA domain ResIII PF04851.15 gi|304313998|ref|YP_003849145.1| - 0.01 15.8 0.0 2 8.4 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|304313998|ref|YP_003849145.1| - 0.011 14.7 0.0 1.6 7.5 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase AAA_17 PF13207.6 gi|304313998|ref|YP_003849145.1| - 0.014 15.8 0.0 11 6.4 0.0 3.6 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|304313998|ref|YP_003849145.1| - 0.015 15.2 1.9 8.2 6.3 0.0 4.0 3 2 1 4 4 4 0 NTPase Hydin_ADK PF17213.3 gi|304313998|ref|YP_003849145.1| - 0.016 15.5 0.5 7 6.9 0.0 2.4 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Sigma54_activ_2 PF14532.6 gi|304313998|ref|YP_003849145.1| - 0.032 14.4 0.0 7.9 6.6 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain cobW PF02492.19 gi|304313998|ref|YP_003849145.1| - 0.05 13.2 0.1 8.9 5.9 0.1 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Cytidylate_kin2 PF13189.6 gi|304313998|ref|YP_003849145.1| - 0.065 13.4 0.2 9 6.4 0.0 2.9 3 0 0 3 3 3 0 Cytidylate kinase-like family Zot PF05707.12 gi|304313998|ref|YP_003849145.1| - 0.18 11.4 0.1 10 5.7 0.0 3.0 2 1 1 3 3 3 0 Zonular occludens toxin (Zot) DEAD PF00270.29 gi|304313998|ref|YP_003849145.1| - 0.18 11.5 1.0 56 3.4 0.0 3.5 2 2 1 4 4 4 0 DEAD/DEAH box helicase PDH PF02153.17 gi|304313999|ref|YP_003849146.1| - 1.1e-79 267.2 0.2 1.6e-79 266.6 0.2 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|304313999|ref|YP_003849146.1| - 9.1e-10 39.0 0.1 2.3e-09 37.7 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|304313999|ref|YP_003849146.1| - 1.5e-07 31.7 0.0 3.4e-06 27.3 0.1 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|304313999|ref|YP_003849146.1| - 3.6e-05 23.4 0.0 0.0001 21.9 0.0 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain adh_short PF00106.25 gi|304313999|ref|YP_003849146.1| - 9.3e-05 22.0 0.4 0.00029 20.3 0.1 1.9 2 0 0 2 2 2 1 short chain dehydrogenase B12-binding PF02310.19 gi|304313999|ref|YP_003849146.1| - 0.0024 17.9 0.3 0.1 12.6 0.0 2.7 2 1 1 3 3 3 1 B12 binding domain KR PF08659.10 gi|304313999|ref|YP_003849146.1| - 0.0044 16.9 0.3 0.014 15.4 0.1 1.9 2 0 0 2 2 2 1 KR domain Wtap PF17098.5 gi|304313999|ref|YP_003849146.1| - 0.014 15.3 0.3 0.04 13.9 0.3 1.7 2 0 0 2 2 2 0 WTAP/Mum2p family UDPG_MGDP_dh_C PF03720.15 gi|304313999|ref|YP_003849146.1| - 0.018 15.4 0.3 12 6.3 0.0 3.1 2 1 1 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDX-ACB PF03147.14 gi|304313999|ref|YP_003849146.1| - 0.024 15.1 0.0 0.087 13.3 0.0 2.0 2 0 0 2 2 1 0 Ferredoxin-fold anticodon binding domain adh_short_C2 PF13561.6 gi|304313999|ref|YP_003849146.1| - 0.027 14.0 0.3 0.2 11.2 0.1 2.4 2 1 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase NAD_Gly3P_dh_N PF01210.23 gi|304313999|ref|YP_003849146.1| - 0.067 13.2 0.2 0.21 11.6 0.1 1.8 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding_2 PF13380.6 gi|304313999|ref|YP_003849146.1| - 0.086 13.3 0.3 0.56 10.7 0.1 2.2 1 1 0 1 1 1 0 CoA binding domain DUF5518 PF17647.1 gi|304314000|ref|YP_003849147.1| - 0.024 14.8 23.1 0.031 14.4 23.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5518) ABC2_membrane_3 PF12698.7 gi|304314000|ref|YP_003849147.1| - 7.5 5.6 12.9 4 6.4 11.0 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein eRF1_1 PF03463.15 gi|304314001|ref|YP_003849148.1| - 4.5e-29 101.0 0.1 8.5e-29 100.2 0.1 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|304314001|ref|YP_003849148.1| - 2.9e-23 82.5 0.9 9.4e-23 80.8 0.3 2.2 2 2 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|304314001|ref|YP_003849148.1| - 9.8e-23 80.9 0.0 1.5e-22 80.3 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 Radical_SAM PF04055.21 gi|304314002|ref|YP_003849149.1| - 7.4e-13 49.2 0.1 7.4e-13 49.2 0.1 2.1 3 1 0 3 3 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|304314002|ref|YP_003849149.1| - 2.7e-08 34.2 0.1 2.7e-08 34.2 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer2_4 PF13510.6 gi|304314002|ref|YP_003849149.1| - 3.4e-07 30.2 0.4 8.1e-07 29.0 0.4 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 gi|304314002|ref|YP_003849149.1| - 2.4e-06 27.1 20.2 5.1e-05 22.9 4.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_14 PF13394.6 gi|304314002|ref|YP_003849149.1| - 0.00014 22.0 0.0 0.00014 22.0 0.0 1.9 2 0 0 2 2 1 1 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|304314002|ref|YP_003849149.1| - 0.0013 19.6 0.1 0.0013 19.6 0.1 2.9 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|304314002|ref|YP_003849149.1| - 0.0051 16.8 4.2 0.0051 16.8 4.2 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|304314002|ref|YP_003849149.1| - 0.0086 16.5 1.7 0.0086 16.5 1.7 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304314002|ref|YP_003849149.1| - 0.01 15.9 3.8 0.01 15.9 3.8 3.0 2 1 1 3 3 2 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|304314002|ref|YP_003849149.1| - 0.022 14.9 3.8 0.022 14.9 3.8 3.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain DUF348 PF03990.14 gi|304314002|ref|YP_003849149.1| - 0.023 14.5 0.4 0.063 13.0 0.2 1.9 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain Fer4_17 PF13534.6 gi|304314002|ref|YP_003849149.1| - 0.028 15.0 0.3 0.028 15.0 0.3 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304314002|ref|YP_003849149.1| - 0.038 14.9 6.1 0.038 14.9 6.1 4.1 4 0 0 4 4 2 0 4Fe-4S binding domain UBA_4 PF14555.6 gi|304314002|ref|YP_003849149.1| - 0.042 13.7 0.0 0.076 12.8 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain Fer4_15 PF13459.6 gi|304314002|ref|YP_003849149.1| - 0.042 14.6 6.6 0.34 11.7 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|304314002|ref|YP_003849149.1| - 0.05 14.1 7.3 0.18 12.4 0.2 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer2_3 PF13085.6 gi|304314002|ref|YP_003849149.1| - 0.082 12.9 0.1 0.082 12.9 0.1 2.3 3 0 0 3 3 2 0 2Fe-2S iron-sulfur cluster binding domain Fer4_10 PF13237.6 gi|304314002|ref|YP_003849149.1| - 4 7.6 25.1 0.88 9.7 8.0 3.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314002|ref|YP_003849149.1| - 7.3 7.3 24.9 22 5.8 2.3 3.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Photo_RC PF00124.19 gi|304314003|ref|YP_003849150.1| - 0.01 15.1 1.0 0.019 14.2 1.0 1.5 1 1 0 1 1 1 0 Photosynthetic reaction centre protein ABC1 PF03109.16 gi|304314004|ref|YP_003849151.1| - 2.2e-42 144.0 0.0 7e-42 142.4 0.0 1.9 2 0 0 2 2 2 1 ABC1 family Pkinase PF00069.25 gi|304314004|ref|YP_003849151.1| - 1e-05 25.0 0.5 2.1e-05 24.0 0.1 1.7 2 0 0 2 2 2 1 Protein kinase domain APH PF01636.23 gi|304314004|ref|YP_003849151.1| - 8.9e-05 22.5 1.8 0.00027 20.9 1.8 2.1 1 1 0 1 1 1 1 Phosphotransferase enzyme family WaaY PF06176.11 gi|304314004|ref|YP_003849151.1| - 0.00011 21.9 0.1 0.0002 21.0 0.1 1.5 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) RIO1 PF01163.22 gi|304314004|ref|YP_003849151.1| - 0.0049 16.5 0.1 0.016 14.8 0.0 2.0 2 0 0 2 2 2 1 RIO1 family YonK PF09642.10 gi|304314004|ref|YP_003849151.1| - 0.028 14.5 0.7 1.4 9.2 0.7 2.5 2 0 0 2 2 2 0 YonK protein HTH_Tnp_Tc3_1 PF11427.8 gi|304314004|ref|YP_003849151.1| - 0.24 11.3 0.8 0.79 9.6 0.8 1.8 1 0 0 1 1 1 0 Tc3 transposase Glyco_transf_28 PF03033.20 gi|304314005|ref|YP_003849152.1| - 4e-08 33.4 0.3 7.8e-08 32.5 0.3 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_1_4 PF13692.6 gi|304314005|ref|YP_003849152.1| - 5.7e-07 30.0 0.1 1.2e-06 29.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|304314005|ref|YP_003849152.1| - 3e-05 24.1 0.0 6.6e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|304314005|ref|YP_003849152.1| - 3.4e-05 23.9 0.1 0.00031 20.8 0.1 2.1 1 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|304314005|ref|YP_003849152.1| - 3.8e-05 24.2 0.3 0.00016 22.1 0.3 2.1 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Epimerase_2 PF02350.19 gi|304314005|ref|YP_003849152.1| - 0.0033 16.4 0.2 0.014 14.3 0.0 2.0 2 0 0 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase AIRC PF00731.20 gi|304314005|ref|YP_003849152.1| - 0.017 14.7 0.3 0.078 12.6 0.1 2.1 2 0 0 2 2 2 0 AIR carboxylase Mito_fiss_Elm1 PF06258.11 gi|304314005|ref|YP_003849152.1| - 0.045 12.9 0.0 0.26 10.4 0.0 2.0 2 0 0 2 2 2 0 Mitochondrial fission ELM1 Pyr_redox_2 PF07992.14 gi|304314006|ref|YP_003849153.1| - 3.1e-51 174.3 1.2 4e-51 174.0 1.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|304314006|ref|YP_003849153.1| - 1.1e-21 77.2 0.5 2.3e-15 56.9 0.1 2.9 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|304314006|ref|YP_003849153.1| - 1.5e-20 73.7 0.0 5.1e-20 71.9 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|304314006|ref|YP_003849153.1| - 2.2e-06 27.0 9.6 0.0035 16.5 0.9 2.8 2 2 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|304314006|ref|YP_003849153.1| - 1.6e-05 25.3 0.5 0.024 15.1 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|304314006|ref|YP_003849153.1| - 4.3e-05 23.0 0.1 4.3e-05 23.0 0.1 2.1 2 1 1 3 3 3 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|304314006|ref|YP_003849153.1| - 6.5e-05 22.3 2.7 0.14 11.4 0.2 2.8 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|304314006|ref|YP_003849153.1| - 6.7e-05 22.6 0.3 6.7e-05 22.6 0.3 3.1 3 1 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|304314006|ref|YP_003849153.1| - 0.0019 17.0 0.5 0.0019 17.0 0.5 1.9 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|304314006|ref|YP_003849153.1| - 0.0022 18.2 0.2 0.0022 18.2 0.2 3.0 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|304314006|ref|YP_003849153.1| - 0.0028 16.8 0.1 0.0028 16.8 0.1 2.4 3 0 0 3 3 3 1 FAD binding domain Thi4 PF01946.17 gi|304314006|ref|YP_003849153.1| - 0.014 14.7 0.3 0.024 13.9 0.1 1.6 2 0 0 2 2 2 0 Thi4 family TrkA_N PF02254.18 gi|304314006|ref|YP_003849153.1| - 0.03 14.6 0.6 2.2 8.6 0.1 3.0 2 1 1 3 3 3 0 TrkA-N domain FAD_binding_3 PF01494.19 gi|304314006|ref|YP_003849153.1| - 0.031 13.5 1.5 0.081 12.2 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain 3HCDH_N PF02737.18 gi|304314006|ref|YP_003849153.1| - 0.034 14.0 0.3 1.2 9.0 0.0 2.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|304314006|ref|YP_003849153.1| - 0.037 14.5 0.0 0.92 10.0 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 gi|304314006|ref|YP_003849153.1| - 0.043 13.2 0.3 0.44 9.9 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|304314006|ref|YP_003849153.1| - 0.089 11.9 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) F420_oxidored PF03807.17 gi|304314006|ref|YP_003849153.1| - 0.1 13.2 0.6 4.9 7.8 0.0 2.5 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Trp_halogenase PF04820.14 gi|304314006|ref|YP_003849153.1| - 0.17 10.7 1.2 0.17 10.7 0.0 1.6 2 0 0 2 2 2 0 Tryptophan halogenase HupF_HypC PF01455.18 gi|304314007|ref|YP_003849154.1| - 6.3e-25 87.1 0.3 7.6e-25 86.8 0.3 1.1 1 0 0 1 1 1 1 HupF/HypC family DUF1654 PF07867.11 gi|304314007|ref|YP_003849154.1| - 0.13 12.0 1.3 0.32 10.7 1.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1654) ACT PF01842.25 gi|304314008|ref|YP_003849155.1| - 0.00028 20.6 0.0 0.00044 20.0 0.0 1.4 1 0 0 1 1 1 1 ACT domain Chorismate_bind PF00425.18 gi|304314009|ref|YP_003849156.1| - 2.9e-93 312.2 0.0 3.7e-92 308.5 0.0 2.1 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|304314009|ref|YP_003849156.1| - 4.7e-22 78.7 0.4 1.5e-21 77.1 0.2 2.0 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|304314010|ref|YP_003849157.1| - 2.2e-41 141.7 0.0 2.5e-41 141.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|304314010|ref|YP_003849157.1| - 7.3e-09 35.7 0.1 5.6e-07 29.5 0.1 2.1 1 1 0 1 1 1 1 Peptidase C26 IGPS PF00218.21 gi|304314011|ref|YP_003849158.1| - 2.1e-66 223.7 0.0 2.4e-66 223.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|304314011|ref|YP_003849158.1| - 0.031 13.3 0.0 0.07 12.1 0.0 1.5 2 0 0 2 2 2 0 FMN-dependent dehydrogenase QRPTase_C PF01729.19 gi|304314011|ref|YP_003849158.1| - 0.052 13.3 0.0 0.087 12.6 0.0 1.3 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain ThiG PF05690.14 gi|304314011|ref|YP_003849158.1| - 0.06 12.6 0.0 0.12 11.6 0.0 1.5 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG PRAI PF00697.22 gi|304314012|ref|YP_003849159.1| - 1.2e-20 74.1 0.0 1.8e-20 73.6 0.0 1.2 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PALP PF00291.25 gi|304314013|ref|YP_003849160.1| - 1.7e-40 139.3 0.4 2e-40 139.1 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1971 PF09313.11 gi|304314013|ref|YP_003849160.1| - 0.21 11.6 0.0 0.45 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1971) Trp_syntA PF00290.20 gi|304314014|ref|YP_003849161.1| - 1.7e-92 309.0 0.0 2e-92 308.7 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|304314014|ref|YP_003849161.1| - 2.9e-08 33.5 0.1 8.6e-08 31.9 0.1 2.0 3 0 0 3 3 3 1 Histidine biosynthesis protein PcrB PF01884.17 gi|304314014|ref|YP_003849161.1| - 2.5e-05 23.8 0.3 0.013 14.9 0.1 2.5 3 0 0 3 3 3 2 PcrB family NMO PF03060.15 gi|304314014|ref|YP_003849161.1| - 4e-05 23.2 0.7 0.0031 17.0 0.1 2.6 3 0 0 3 3 3 1 Nitronate monooxygenase NanE PF04131.14 gi|304314014|ref|YP_003849161.1| - 0.0007 18.8 0.0 0.0016 17.7 0.0 1.7 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase PEP_mutase PF13714.6 gi|304314014|ref|YP_003849161.1| - 0.00074 19.0 0.5 0.03 13.8 0.1 2.6 2 1 0 3 3 3 1 Phosphoenolpyruvate phosphomutase BtpA PF03437.15 gi|304314014|ref|YP_003849161.1| - 0.0021 17.5 0.1 0.013 15.0 0.0 2.0 2 0 0 2 2 2 1 BtpA family ThiG PF05690.14 gi|304314014|ref|YP_003849161.1| - 0.0036 16.6 0.3 0.0077 15.6 0.2 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|304314014|ref|YP_003849161.1| - 0.017 14.4 0.1 0.077 12.3 0.1 2.1 2 0 0 2 2 2 0 Thiamine monophosphate synthase IGPS PF00218.21 gi|304314014|ref|YP_003849161.1| - 0.019 14.1 0.0 0.16 11.1 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase IMPDH PF00478.25 gi|304314014|ref|YP_003849161.1| - 0.041 12.9 0.2 0.46 9.4 0.1 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|304314014|ref|YP_003849161.1| - 0.043 12.8 0.0 0.15 11.0 0.0 1.9 1 1 1 2 2 2 0 FMN-dependent dehydrogenase DUF561 PF04481.12 gi|304314014|ref|YP_003849161.1| - 0.067 12.4 0.0 0.63 9.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF561) HMGL-like PF00682.19 gi|304314014|ref|YP_003849161.1| - 0.085 12.4 0.0 0.73 9.3 0.0 2.3 2 1 0 2 2 2 0 HMGL-like Dus PF01207.17 gi|304314014|ref|YP_003849161.1| - 0.094 11.8 0.1 0.96 8.5 0.0 2.2 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) PA PF02225.22 gi|304314014|ref|YP_003849161.1| - 0.13 12.3 0.6 11 6.1 0.0 2.7 2 1 0 3 3 3 0 PA domain GDPD PF03009.17 gi|304314014|ref|YP_003849161.1| - 0.18 11.5 0.0 0.75 9.5 0.0 1.9 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Amidohydro_2 PF04909.14 gi|304314014|ref|YP_003849161.1| - 0.26 11.0 0.9 4.4 7.0 0.1 2.6 1 1 2 3 3 3 0 Amidohydrolase Glycos_transf_3 PF00591.21 gi|304314015|ref|YP_003849162.1| - 2.2e-78 263.3 1.4 2.5e-78 263.2 0.4 1.5 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|304314015|ref|YP_003849162.1| - 2.1e-20 72.4 2.3 4.1e-20 71.4 2.3 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain AAA_17 PF13207.6 gi|304314016|ref|YP_003849163.1| - 2.6e-25 89.4 0.0 3.5e-25 89.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|304314016|ref|YP_003849163.1| - 1.3e-10 42.0 0.0 2.1e-10 41.2 0.0 1.3 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|304314016|ref|YP_003849163.1| - 1.4e-05 25.3 0.1 0.0001 22.4 0.1 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.6 gi|304314016|ref|YP_003849163.1| - 8e-05 22.8 0.0 0.00021 21.5 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|304314016|ref|YP_003849163.1| - 8.9e-05 22.8 0.0 0.0002 21.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|304314016|ref|YP_003849163.1| - 0.00013 21.7 0.0 0.18 11.4 0.0 2.3 2 0 0 2 2 2 2 Thymidylate kinase AAA PF00004.29 gi|304314016|ref|YP_003849163.1| - 0.0002 21.8 0.1 0.00046 20.6 0.0 1.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|304314016|ref|YP_003849163.1| - 0.00051 20.3 0.0 0.00073 19.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|304314016|ref|YP_003849163.1| - 0.00055 20.1 0.1 0.0039 17.3 0.1 2.0 1 1 0 1 1 1 1 Adenylate kinase AAA_16 PF13191.6 gi|304314016|ref|YP_003849163.1| - 0.00072 20.0 0.0 0.00087 19.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|304314016|ref|YP_003849163.1| - 0.00095 19.7 0.0 0.0011 19.5 0.0 1.5 1 1 0 1 1 1 1 ABC transporter Cytidylate_kin PF02224.18 gi|304314016|ref|YP_003849163.1| - 0.00095 19.0 0.0 0.013 15.3 0.0 2.1 2 0 0 2 2 2 1 Cytidylate kinase Cytidylate_kin2 PF13189.6 gi|304314016|ref|YP_003849163.1| - 0.0011 19.1 0.0 0.0022 18.2 0.0 1.5 2 0 0 2 2 2 1 Cytidylate kinase-like family dNK PF01712.19 gi|304314016|ref|YP_003849163.1| - 0.002 18.0 0.1 0.23 11.3 0.0 2.1 2 0 0 2 2 2 1 Deoxynucleoside kinase RuvB_N PF05496.12 gi|304314016|ref|YP_003849163.1| - 0.0027 17.5 0.0 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MMR_HSR1 PF01926.23 gi|304314016|ref|YP_003849163.1| - 0.0037 17.3 0.1 0.013 15.6 0.0 1.9 2 1 0 2 2 2 1 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|304314016|ref|YP_003849163.1| - 0.0048 16.8 0.0 0.0069 16.3 0.0 1.4 1 0 0 1 1 1 1 NTPase NACHT PF05729.12 gi|304314016|ref|YP_003849163.1| - 0.016 15.1 0.1 0.027 14.4 0.1 1.5 2 1 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 gi|304314016|ref|YP_003849163.1| - 0.021 14.0 0.0 0.028 13.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ATP_bind_1 PF03029.17 gi|304314016|ref|YP_003849163.1| - 0.024 14.4 0.0 0.053 13.3 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_3 PF07726.11 gi|304314016|ref|YP_003849163.1| - 0.032 14.1 0.1 0.2 11.5 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|304314016|ref|YP_003849163.1| - 0.041 13.6 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|304314016|ref|YP_003849163.1| - 0.041 13.9 0.0 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF917 PF06032.12 gi|304314016|ref|YP_003849163.1| - 0.046 12.6 0.5 0.9 8.3 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF917) SRP54 PF00448.22 gi|304314016|ref|YP_003849163.1| - 0.047 13.3 0.0 0.1 12.2 0.0 1.6 2 0 0 2 2 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|304314016|ref|YP_003849163.1| - 0.064 13.0 0.0 0.087 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|304314016|ref|YP_003849163.1| - 0.1 13.0 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MeaB PF03308.16 gi|304314016|ref|YP_003849163.1| - 0.11 11.4 0.1 0.28 10.1 0.0 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|304314016|ref|YP_003849163.1| - 0.16 12.0 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|304314016|ref|YP_003849163.1| - 0.2 11.4 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase FeS_assembly_P PF01883.19 gi|304314017|ref|YP_003849164.1| - 5.7e-20 71.3 0.6 7.7e-20 70.9 0.6 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Cyanate_lyase PF02560.14 gi|304314017|ref|YP_003849164.1| - 0.13 12.1 0.3 0.41 10.5 0.1 1.8 1 1 1 2 2 2 0 Cyanate lyase C-terminal domain DUF5591 PF17884.1 gi|304314018|ref|YP_003849165.1| - 6.1e-40 136.6 0.0 8.1e-40 136.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|304314018|ref|YP_003849165.1| - 7.4e-15 54.7 1.2 3.4e-14 52.6 1.2 2.1 1 1 1 2 2 2 1 PUA domain TGT_C2 PF14810.6 gi|304314018|ref|YP_003849165.1| - 3.1e-07 30.4 0.0 5.8e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase Glu_synthase PF01645.17 gi|304314019|ref|YP_003849166.1| - 2.1e-122 408.8 0.4 2.6e-122 408.5 0.4 1.0 1 0 0 1 1 1 1 Conserved region in glutamate synthase DUF2769 PF10967.8 gi|304314019|ref|YP_003849166.1| - 1.3e-15 57.8 8.0 2.6e-15 56.8 8.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) FMN_dh PF01070.18 gi|304314019|ref|YP_003849166.1| - 1.5e-13 50.5 4.5 7.6e-10 38.3 2.8 2.8 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|304314019|ref|YP_003849166.1| - 7.9e-09 35.0 8.0 7.9e-09 35.0 4.6 2.2 1 1 1 2 2 2 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|304314019|ref|YP_003849166.1| - 3.7e-08 33.1 4.1 6.3e-08 32.4 4.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|304314019|ref|YP_003849166.1| - 0.00052 19.5 0.1 0.0017 17.9 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|304314019|ref|YP_003849166.1| - 0.032 13.5 0.3 0.054 12.7 0.3 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Glu_syn_central PF04898.14 gi|304314019|ref|YP_003849166.1| - 0.058 12.9 0.1 0.62 9.5 0.0 2.2 2 0 0 2 2 2 0 Glutamate synthase central domain LrgB PF04172.16 gi|304314019|ref|YP_003849166.1| - 0.069 12.7 0.7 0.13 11.8 0.7 1.4 1 0 0 1 1 1 0 LrgB-like family HD PF01966.22 gi|304314020|ref|YP_003849167.1| - 2.3e-17 63.4 0.2 3.2e-17 62.9 0.2 1.2 1 0 0 1 1 1 1 HD domain DUF287 PF03384.14 gi|304314020|ref|YP_003849167.1| - 0.069 13.6 0.2 0.17 12.3 0.2 1.7 1 0 0 1 1 1 0 Drosophila protein of unknown function, DUF287 HDOD PF08668.12 gi|304314020|ref|YP_003849167.1| - 0.12 11.8 0.0 0.98 8.9 0.0 2.0 1 1 1 2 2 2 0 HDOD domain IF2_N PF04760.15 gi|304314021|ref|YP_003849168.1| - 0.031 14.1 0.0 0.037 13.8 0.0 1.1 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region DUF724 PF05266.14 gi|304314021|ref|YP_003849168.1| - 0.049 13.5 0.1 0.049 13.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF724) TFIIE_alpha PF02002.17 gi|304314022|ref|YP_003849169.1| - 9.2e-29 99.4 0.3 1e-28 99.2 0.3 1.0 1 0 0 1 1 1 1 TFIIE alpha subunit Aldolase PF01081.19 gi|304314022|ref|YP_003849169.1| - 0.0075 15.7 0.1 0.0082 15.6 0.1 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase Rrf2 PF02082.20 gi|304314022|ref|YP_003849169.1| - 0.015 15.7 0.0 0.02 15.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_9 PF08221.11 gi|304314022|ref|YP_003849169.1| - 0.016 15.3 0.0 0.02 15.0 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|304314022|ref|YP_003849169.1| - 0.04 13.8 0.1 0.05 13.5 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.11 gi|304314022|ref|YP_003849169.1| - 0.089 12.8 0.5 0.11 12.5 0.3 1.3 1 1 0 1 1 1 0 Sulfolobus plasmid regulatory protein F420_ligase PF01996.16 gi|304314023|ref|YP_003849170.1| - 1.7e-24 86.6 0.0 2e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase FeS PF04060.13 gi|304314024|ref|YP_003849171.1| - 1.9e-13 49.8 0.5 3.6e-13 48.9 0.5 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.19 gi|304314025|ref|YP_003849172.1| - 2.4e-13 50.1 0.0 4.1e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|304314025|ref|YP_003849172.1| - 5.4e-05 22.3 0.1 0.18 10.8 0.1 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|304314025|ref|YP_003849172.1| - 0.00027 20.6 0.0 0.00085 19.0 0.0 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|304314025|ref|YP_003849172.1| - 0.00054 20.3 0.3 0.0011 19.3 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|304314025|ref|YP_003849172.1| - 0.00083 19.8 0.0 0.0021 18.5 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|304314025|ref|YP_003849172.1| - 0.0013 18.0 0.0 0.0021 17.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.14 gi|304314025|ref|YP_003849172.1| - 0.0015 18.5 0.1 0.0032 17.4 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.9 gi|304314025|ref|YP_003849172.1| - 0.0037 16.6 0.0 0.0051 16.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.6 gi|304314025|ref|YP_003849172.1| - 0.0078 16.8 0.0 0.016 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|304314025|ref|YP_003849172.1| - 0.017 15.2 0.1 0.017 15.2 0.1 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|304314025|ref|YP_003849172.1| - 0.019 15.2 0.0 0.04 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|304314025|ref|YP_003849172.1| - 0.022 14.6 0.0 0.049 13.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain TrwB_AAD_bind PF10412.9 gi|304314025|ref|YP_003849172.1| - 0.024 13.6 0.0 0.037 12.9 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.6 gi|304314025|ref|YP_003849172.1| - 0.025 14.7 0.1 0.041 14.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|304314025|ref|YP_003849172.1| - 0.037 13.5 0.0 0.055 12.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Ploopntkinase3 PF18751.1 gi|304314025|ref|YP_003849172.1| - 0.039 13.9 0.0 0.059 13.3 0.0 1.2 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA PF00004.29 gi|304314025|ref|YP_003849172.1| - 0.043 14.3 0.1 0.085 13.3 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|304314025|ref|YP_003849172.1| - 0.045 12.8 0.1 0.072 12.1 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP_bind_1 PF03029.17 gi|304314025|ref|YP_003849172.1| - 0.048 13.4 0.9 0.14 11.9 0.1 2.1 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_7 PF12775.7 gi|304314025|ref|YP_003849172.1| - 0.072 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region PduV-EutP PF10662.9 gi|304314025|ref|YP_003849172.1| - 0.076 12.8 0.2 5.4 6.8 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Viral_helicase1 PF01443.18 gi|304314025|ref|YP_003849172.1| - 0.078 12.7 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MipZ PF09140.11 gi|304314025|ref|YP_003849172.1| - 0.093 12.0 0.1 0.36 10.1 0.1 1.9 1 1 0 1 1 1 0 ATPase MipZ NTPase_1 PF03266.15 gi|304314025|ref|YP_003849172.1| - 0.094 12.6 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.6 gi|304314025|ref|YP_003849172.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|304314025|ref|YP_003849172.1| - 0.14 11.5 0.2 0.25 10.7 0.2 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_26 PF13500.6 gi|304314025|ref|YP_003849172.1| - 0.17 11.7 0.1 0.58 9.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|304314026|ref|YP_003849173.1| - 1.2e-14 55.0 0.1 2.1e-14 54.2 0.1 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|304314026|ref|YP_003849173.1| - 1.8e-09 37.9 0.6 0.00014 21.8 0.0 2.8 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|304314026|ref|YP_003849173.1| - 0.0002 20.9 1.2 0.0048 16.4 1.0 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|304314026|ref|YP_003849173.1| - 0.0016 18.2 0.0 0.0045 16.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|304314026|ref|YP_003849173.1| - 0.0018 18.7 0.0 0.0032 17.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain KAP_NTPase PF07693.14 gi|304314026|ref|YP_003849173.1| - 0.0018 17.6 0.0 0.0035 16.6 0.0 1.7 1 1 0 1 1 1 1 KAP family P-loop domain AAA_18 PF13238.6 gi|304314026|ref|YP_003849173.1| - 0.0059 17.2 0.0 0.012 16.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|304314026|ref|YP_003849173.1| - 0.0086 16.4 0.2 0.05 13.9 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|304314026|ref|YP_003849173.1| - 0.009 15.7 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|304314026|ref|YP_003849173.1| - 0.018 14.9 0.0 0.048 13.6 0.0 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|304314026|ref|YP_003849173.1| - 0.04 14.4 1.0 0.16 12.5 0.1 2.0 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|304314026|ref|YP_003849173.1| - 0.041 13.5 0.0 0.096 12.3 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_PrkA PF08298.11 gi|304314026|ref|YP_003849173.1| - 0.049 12.6 0.2 0.15 11.0 0.0 1.8 2 0 0 2 2 2 0 PrkA AAA domain AAA_7 PF12775.7 gi|304314026|ref|YP_003849173.1| - 0.09 12.3 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|304314026|ref|YP_003849173.1| - 0.093 12.7 0.0 3.5 7.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ComA PF02679.15 gi|304314027|ref|YP_003849174.1| - 3.9e-92 308.1 0.0 4.4e-92 307.9 0.0 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) DUF4392 PF14336.6 gi|304314027|ref|YP_003849174.1| - 0.044 13.2 0.1 0.85 9.0 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4392) NTR2 PF15458.6 gi|304314027|ref|YP_003849174.1| - 0.058 12.9 0.2 0.092 12.3 0.2 1.3 1 0 0 1 1 1 0 Nineteen complex-related protein 2 PK_C PF02887.16 gi|304314028|ref|YP_003849175.1| - 3.5e-17 62.7 0.0 7.5e-17 61.6 0.0 1.5 1 1 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Tubulin PF00091.25 gi|304314029|ref|YP_003849176.1| - 4.7e-41 141.2 0.9 1.2e-40 139.8 0.4 2.0 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|304314029|ref|YP_003849176.1| - 9.9e-36 121.9 1.5 9.9e-36 121.9 1.5 2.3 2 1 1 3 3 3 1 FtsZ family, C-terminal domain DUF3236 PF11576.8 gi|304314029|ref|YP_003849176.1| - 0.06 13.1 1.3 0.12 12.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3236) NAD_binding_10 PF13460.6 gi|304314029|ref|YP_003849176.1| - 0.07 13.0 0.4 0.46 10.3 0.0 2.2 2 0 0 2 2 2 0 NAD(P)H-binding YpsA PF06908.11 gi|304314029|ref|YP_003849176.1| - 0.16 12.0 0.0 1.4 8.9 0.0 2.1 2 0 0 2 2 2 0 YspA SLOG family ZT_dimer PF16916.5 gi|304314029|ref|YP_003849176.1| - 0.17 12.0 0.2 43 4.3 0.0 3.6 3 0 0 3 3 3 0 Dimerisation domain of Zinc Transporter SecE PF00584.20 gi|304314030|ref|YP_003849177.1| - 4.8e-11 42.4 0.1 5.7e-11 42.2 0.1 1.0 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|304314031|ref|YP_003849178.1| - 1.9e-18 66.1 1.0 1.9e-18 66.1 0.1 1.5 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|304314031|ref|YP_003849178.1| - 6.4e-07 29.1 0.1 2.2e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 KOW motif NusG PF02357.19 gi|304314031|ref|YP_003849178.1| - 0.0086 16.6 0.1 0.29 11.6 0.0 2.5 2 1 0 2 2 2 1 Transcription termination factor nusG Ribosomal_L11_N PF03946.14 gi|304314032|ref|YP_003849179.1| - 1.1e-24 86.0 1.5 1.3e-24 85.8 0.4 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|304314032|ref|YP_003849179.1| - 1.6e-21 76.6 0.1 2.8e-21 75.8 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|304314033|ref|YP_003849180.1| - 3.6e-48 164.0 1.2 4.2e-48 163.8 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family IL32 PF15225.6 gi|304314033|ref|YP_003849180.1| - 0.024 15.0 0.1 0.053 13.9 0.0 1.6 2 0 0 2 2 2 0 Interleukin 32 Ribosomal_S30AE PF02482.19 gi|304314033|ref|YP_003849180.1| - 0.08 13.7 0.6 0.87 10.4 0.1 2.2 2 0 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein DUF4695 PF15766.5 gi|304314033|ref|YP_003849180.1| - 0.49 10.6 3.1 0.33 11.2 0.2 2.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4695) Ribosomal_L10 PF00466.20 gi|304314034|ref|YP_003849181.1| - 4.8e-24 84.4 0.2 1.6e-23 82.7 0.2 1.9 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|304314034|ref|YP_003849181.1| - 6.5e-22 77.3 0.1 1.5e-21 76.1 0.1 1.7 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|304314034|ref|YP_003849181.1| - 0.012 16.2 32.6 2.5 8.8 31.6 3.2 2 1 0 2 2 2 0 60s Acidic ribosomal protein RNA_pol_3_Rpc31 PF11705.8 gi|304314034|ref|YP_003849181.1| - 0.13 12.5 4.4 0.2 11.9 3.2 1.8 2 0 0 2 2 2 0 DNA-directed RNA polymerase III subunit Rpc31 DUF3884 PF13024.6 gi|304314034|ref|YP_003849181.1| - 0.17 11.5 0.0 0.33 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3884) Spore_coat_CotO PF14153.6 gi|304314034|ref|YP_003849181.1| - 0.54 10.2 5.2 0.93 9.4 5.2 1.4 1 0 0 1 1 1 0 Spore coat protein CotO DUF1697 PF08002.11 gi|304314034|ref|YP_003849181.1| - 0.75 10.2 4.5 0.25 11.8 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1697) Ribosomal_60s PF00428.19 gi|304314035|ref|YP_003849182.1| - 1.6e-18 67.0 29.5 1.9e-18 66.8 29.5 1.0 1 0 0 1 1 1 1 60s Acidic ribosomal protein YceD PF02620.17 gi|304314035|ref|YP_003849182.1| - 0.011 15.8 3.8 0.013 15.6 3.8 1.2 1 0 0 1 1 1 0 Large ribosomal RNA subunit accumulation protein YceD PepSY_2 PF13670.6 gi|304314035|ref|YP_003849182.1| - 0.012 15.6 11.4 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain EF-hand_14 PF17959.1 gi|304314035|ref|YP_003849182.1| - 0.018 15.4 0.2 0.034 14.5 0.0 1.5 2 0 0 2 2 2 0 EF-hand domain DUF740 PF05340.12 gi|304314035|ref|YP_003849182.1| - 0.18 10.6 0.9 0.19 10.5 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF740) DUF2868 PF11067.8 gi|304314035|ref|YP_003849182.1| - 0.24 10.8 2.4 0.29 10.6 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) AIF_C PF14721.6 gi|304314035|ref|YP_003849182.1| - 0.29 11.5 1.2 0.5 10.7 1.2 1.4 1 0 0 1 1 1 0 Apoptosis-inducing factor, mitochondrion-associated, C-term PhetRS_B1 PF18262.1 gi|304314035|ref|YP_003849182.1| - 0.34 11.2 0.0 0.34 11.2 0.0 2.0 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain RRN3 PF05327.11 gi|304314035|ref|YP_003849182.1| - 0.36 9.3 2.4 0.42 9.1 2.4 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 CDC45 PF02724.14 gi|304314035|ref|YP_003849182.1| - 0.37 9.0 4.6 0.4 8.9 4.6 1.0 1 0 0 1 1 1 0 CDC45-like protein NOA36 PF06524.12 gi|304314035|ref|YP_003849182.1| - 0.6 9.4 2.8 0.66 9.2 2.8 1.1 1 0 0 1 1 1 0 NOA36 protein Paf1 PF03985.13 gi|304314035|ref|YP_003849182.1| - 0.61 9.0 7.3 0.68 8.9 7.3 1.1 1 0 0 1 1 1 0 Paf1 RNA_pol_3_Rpc31 PF11705.8 gi|304314035|ref|YP_003849182.1| - 0.74 10.0 8.5 0.86 9.8 8.5 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Spore_coat_CotO PF14153.6 gi|304314035|ref|YP_003849182.1| - 1.6 8.6 9.0 1.8 8.4 9.0 1.2 1 0 0 1 1 1 0 Spore coat protein CotO DUF4746 PF15928.5 gi|304314035|ref|YP_003849182.1| - 4.5 6.6 10.3 4.9 6.5 10.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) DUF3391 PF11871.8 gi|304314035|ref|YP_003849182.1| - 9.6 6.7 9.3 12 6.4 9.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3391) Nop53 PF07767.11 gi|304314035|ref|YP_003849182.1| - 9.7 5.5 11.7 10 5.4 11.7 1.2 1 0 0 1 1 1 0 Nop53 (60S ribosomal biogenesis) tRNA-synt_2c PF01411.19 gi|304314036|ref|YP_003849183.1| - 1.2e-155 519.2 0.0 1.6e-155 518.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|304314036|ref|YP_003849183.1| - 7e-20 71.9 3.7 1.5e-19 70.8 3.7 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|304314036|ref|YP_003849183.1| - 6.8e-13 48.5 1.6 1.9e-12 47.1 1.0 2.2 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|304314036|ref|YP_003849183.1| - 0.001 18.4 0.0 0.0021 17.4 0.0 1.5 1 1 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit HcyBio PF01837.16 gi|304314037|ref|YP_003849184.1| - 2.6e-105 352.1 0.0 3e-105 351.9 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4_2 PF12797.7 gi|304314037|ref|YP_003849184.1| - 6.4e-07 29.1 14.4 0.00074 19.5 2.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304314037|ref|YP_003849184.1| - 9.8e-07 28.6 11.6 0.0025 17.8 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|304314037|ref|YP_003849184.1| - 2.4e-06 27.1 11.8 4.7e-06 26.2 1.9 3.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304314037|ref|YP_003849184.1| - 4.8e-06 27.1 7.3 0.0026 18.3 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314037|ref|YP_003849184.1| - 7.2e-05 22.9 3.4 0.043 14.0 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314037|ref|YP_003849184.1| - 0.00014 21.9 10.8 0.0014 18.7 0.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314037|ref|YP_003849184.1| - 0.0024 18.4 3.8 0.1 13.2 0.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314037|ref|YP_003849184.1| - 0.0045 17.9 6.9 0.028 15.4 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|304314037|ref|YP_003849184.1| - 0.011 16.2 3.1 0.011 16.2 3.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304314037|ref|YP_003849184.1| - 0.016 15.6 3.1 0.069 13.6 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain FMN_bind PF04205.14 gi|304314037|ref|YP_003849184.1| - 0.036 14.6 0.1 7.9 7.1 0.1 2.3 2 0 0 2 2 2 0 FMN-binding domain Fer4_18 PF13746.6 gi|304314037|ref|YP_003849184.1| - 0.11 12.7 1.5 0.2 11.9 1.5 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314037|ref|YP_003849184.1| - 0.25 11.5 8.9 4.6 7.4 9.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304314037|ref|YP_003849184.1| - 1.2 9.8 10.3 0.97 10.0 0.6 2.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I ThiI PF02568.14 gi|304314038|ref|YP_003849185.1| - 1.5e-80 269.4 0.0 2e-80 269.1 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|304314038|ref|YP_003849185.1| - 3.9e-23 82.1 1.2 1.3e-22 80.4 0.1 2.3 3 0 0 3 3 3 1 THUMP domain QueC PF06508.13 gi|304314038|ref|YP_003849185.1| - 2.2e-06 27.3 0.2 0.0015 18.1 0.0 2.7 3 1 0 3 3 3 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|304314038|ref|YP_003849185.1| - 2.6e-05 23.2 0.0 4.3e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|304314038|ref|YP_003849185.1| - 0.05 12.7 0.0 0.11 11.6 0.0 1.5 2 0 0 2 2 2 0 NAD synthase RuBisCO_large PF00016.20 gi|304314038|ref|YP_003849185.1| - 0.11 11.6 0.0 11 5.1 0.0 2.2 1 1 1 2 2 2 0 Ribulose bisphosphate carboxylase large chain, catalytic domain FBPase_3 PF01950.16 gi|304314039|ref|YP_003849186.1| - 2.1e-187 622.6 0.0 2.4e-187 622.5 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase YozE_SAM_like PF06855.12 gi|304314039|ref|YP_003849186.1| - 0.11 12.7 0.3 22 5.3 0.0 2.4 2 0 0 2 2 2 0 YozE SAM-like fold DUF5616 PF18481.1 gi|304314040|ref|YP_003849187.1| - 5.7e-46 156.3 0.0 7e-46 156.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|304314040|ref|YP_003849187.1| - 1.5e-22 79.0 4.9 2.6e-22 78.3 4.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) KHA PF11834.8 gi|304314040|ref|YP_003849187.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 KHA, dimerisation domain of potassium ion channel PhoU_div PF01865.16 gi|304314041|ref|YP_003849188.1| - 7.7e-73 244.4 9.8 8.6e-73 244.2 9.8 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|304314041|ref|YP_003849188.1| - 5.6e-06 26.7 10.5 0.0011 19.4 4.3 2.3 2 0 0 2 2 2 2 PhoU domain HTH_50 PF18024.1 gi|304314041|ref|YP_003849188.1| - 0.0027 17.3 3.1 0.015 14.9 0.2 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain ABC_tran_CTD PF16326.5 gi|304314041|ref|YP_003849188.1| - 5.6 7.3 7.5 6.2 7.1 0.3 3.4 2 2 0 3 3 3 0 ABC transporter C-terminal domain DUF357 PF04010.13 gi|304314042|ref|YP_003849189.1| - 2.1e-15 56.5 0.1 2.4e-15 56.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CDP-OH_P_transf PF01066.21 gi|304314043|ref|YP_003849190.1| - 1.3e-09 38.7 2.0 1.3e-09 38.7 2.0 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Sua5_yciO_yrdC PF01300.18 gi|304314044|ref|YP_003849191.1| - 1.8e-46 157.9 0.0 2.1e-46 157.7 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Rad51 PF08423.11 gi|304314045|ref|YP_003849192.1| - 1.3e-24 86.9 0.0 1.6e-24 86.6 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|304314045|ref|YP_003849192.1| - 4.2e-16 59.2 0.0 5.4e-16 58.9 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|304314045|ref|YP_003849192.1| - 5.5e-08 32.6 0.0 1.2e-07 31.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|304314045|ref|YP_003849192.1| - 2.7e-07 30.5 0.0 4.1e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|304314045|ref|YP_003849192.1| - 7.3e-07 28.8 0.0 9.2e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 KaiC Zot PF05707.12 gi|304314045|ref|YP_003849192.1| - 2.3e-06 27.4 0.0 3e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA PF00004.29 gi|304314045|ref|YP_003849192.1| - 0.00043 20.7 0.0 0.00062 20.2 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|304314045|ref|YP_003849192.1| - 0.0024 17.8 0.0 0.003 17.5 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|304314045|ref|YP_003849192.1| - 0.024 14.4 0.0 0.069 12.9 0.0 1.8 1 1 1 2 2 2 0 IstB-like ATP binding protein CbiA PF01656.23 gi|304314045|ref|YP_003849192.1| - 0.025 14.6 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain KTI12 PF08433.10 gi|304314045|ref|YP_003849192.1| - 0.046 13.2 0.0 0.065 12.7 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DnaB_C PF03796.15 gi|304314045|ref|YP_003849192.1| - 0.12 11.7 0.1 0.68 9.2 0.0 1.9 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|304314045|ref|YP_003849192.1| - 0.14 12.4 0.0 0.19 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|304314045|ref|YP_003849192.1| - 0.16 11.2 0.0 0.2 10.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_31 PF13614.6 gi|304314045|ref|YP_003849192.1| - 0.2 11.6 0.3 0.58 10.0 0.3 1.7 1 1 0 1 1 1 0 AAA domain Aminotran_1_2 PF00155.21 gi|304314046|ref|YP_003849193.1| - 1.8e-36 126.1 0.0 2e-36 125.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|304314046|ref|YP_003849193.1| - 5.7e-05 22.2 0.0 0.02 13.9 0.0 2.1 1 1 0 1 1 1 1 Aminotransferase class-V Alliinase_C PF04864.13 gi|304314046|ref|YP_003849193.1| - 0.00051 19.0 0.1 0.0031 16.5 0.1 1.9 1 1 1 2 2 2 1 Allinase ABC_tran PF00005.27 gi|304314047|ref|YP_003849194.1| - 2.8e-40 138.0 0.0 2e-19 70.5 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|304314047|ref|YP_003849194.1| - 7e-15 55.6 4.9 0.0011 18.8 0.7 4.3 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|304314047|ref|YP_003849194.1| - 6.9e-13 48.5 2.0 1e-05 25.1 0.7 3.1 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|304314047|ref|YP_003849194.1| - 1.6e-10 40.6 2.2 3.3e-10 39.6 2.2 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA PF00004.29 gi|304314047|ref|YP_003849194.1| - 1.2e-06 29.0 0.1 0.14 12.6 0.0 3.4 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) Fer4 PF00037.27 gi|304314047|ref|YP_003849194.1| - 1.5e-06 27.7 1.1 1.5e-06 27.7 1.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain RsgA_GTPase PF03193.16 gi|304314047|ref|YP_003849194.1| - 9.6e-05 22.3 0.0 0.051 13.5 0.0 2.5 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|304314047|ref|YP_003849194.1| - 0.0002 21.9 0.0 0.2 12.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|304314047|ref|YP_003849194.1| - 0.00023 21.0 0.8 0.48 10.1 0.0 3.0 4 0 0 4 4 3 2 AAA domain RuvB_N PF05496.12 gi|304314047|ref|YP_003849194.1| - 0.00025 20.8 0.1 1.3 8.8 0.0 3.1 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain Fer4_21 PF14697.6 gi|304314047|ref|YP_003849194.1| - 0.00074 19.6 8.1 0.0013 18.8 8.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Rad17 PF03215.15 gi|304314047|ref|YP_003849194.1| - 0.00083 19.3 0.0 0.05 13.5 0.0 2.4 2 0 0 2 2 2 1 Rad17 P-loop domain Fer4_6 PF12837.7 gi|304314047|ref|YP_003849194.1| - 0.0009 19.2 0.9 0.0009 19.2 0.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_33 PF13671.6 gi|304314047|ref|YP_003849194.1| - 0.0011 19.2 0.1 1.2 9.3 0.0 3.2 3 1 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|304314047|ref|YP_003849194.1| - 0.0011 18.7 2.1 0.28 10.9 0.9 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|304314047|ref|YP_003849194.1| - 0.0012 19.1 0.0 1.6 9.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain Fer4_9 PF13187.6 gi|304314047|ref|YP_003849194.1| - 0.0013 18.9 8.9 0.0022 18.1 8.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314047|ref|YP_003849194.1| - 0.0016 18.5 0.8 0.0016 18.5 0.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain RNA_helicase PF00910.22 gi|304314047|ref|YP_003849194.1| - 0.002 18.5 0.0 3.1 8.2 0.0 2.6 2 0 0 2 2 2 1 RNA helicase Fer4_2 PF12797.7 gi|304314047|ref|YP_003849194.1| - 0.0028 17.7 1.0 0.0028 17.7 1.0 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_18 PF13238.6 gi|304314047|ref|YP_003849194.1| - 0.0029 18.2 0.0 0.68 10.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain Fer4_7 PF12838.7 gi|304314047|ref|YP_003849194.1| - 0.0034 17.9 8.5 0.0069 17.0 8.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_29 PF13555.6 gi|304314047|ref|YP_003849194.1| - 0.004 16.9 0.3 0.21 11.4 0.2 2.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|304314047|ref|YP_003849194.1| - 0.0066 15.7 0.0 0.39 9.8 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.6 gi|304314047|ref|YP_003849194.1| - 0.0074 16.7 0.0 0.8 10.1 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain TsaE PF02367.17 gi|304314047|ref|YP_003849194.1| - 0.0096 15.9 0.0 4.2 7.4 0.0 2.7 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|304314047|ref|YP_003849194.1| - 0.023 14.6 0.0 4.3 7.2 0.0 2.5 2 0 0 2 2 2 0 NACHT domain AAA_13 PF13166.6 gi|304314047|ref|YP_003849194.1| - 0.031 12.9 0.1 0.16 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Fer4_16 PF13484.6 gi|304314047|ref|YP_003849194.1| - 0.036 15.0 8.6 0.18 12.8 2.3 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain IstB_IS21 PF01695.17 gi|304314047|ref|YP_003849194.1| - 0.036 13.8 0.4 12 5.6 0.0 2.8 3 0 0 3 3 2 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|304314047|ref|YP_003849194.1| - 0.038 14.2 0.0 9.8 6.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|304314047|ref|YP_003849194.1| - 0.052 13.5 0.2 5.6 7.0 0.0 2.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|304314047|ref|YP_003849194.1| - 0.058 13.5 0.1 0.8 9.8 0.0 2.5 2 1 0 2 2 2 0 50S ribosome-binding GTPase PhoH PF02562.16 gi|304314047|ref|YP_003849194.1| - 0.083 12.3 0.8 0.96 8.9 0.0 2.8 4 0 0 4 4 3 0 PhoH-like protein AAA_25 PF13481.6 gi|304314047|ref|YP_003849194.1| - 0.085 12.4 3.0 6.6 6.2 0.0 3.3 3 0 0 3 3 3 0 AAA domain CLP1_P PF16575.5 gi|304314047|ref|YP_003849194.1| - 0.16 11.8 0.1 20 4.9 0.0 2.5 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NTPase_1 PF03266.15 gi|304314047|ref|YP_003849194.1| - 0.18 11.7 1.4 13 5.7 0.0 3.5 2 1 1 3 3 3 0 NTPase SRP54 PF00448.22 gi|304314047|ref|YP_003849194.1| - 0.18 11.4 0.0 11 5.6 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CBFD_NFYB_HMF PF00808.23 gi|304314048|ref|YP_003849195.1| - 1.2e-21 76.8 0.6 1.3e-21 76.6 0.6 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|304314048|ref|YP_003849195.1| - 4.3e-11 43.3 0.1 4.5e-11 43.2 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 gi|304314048|ref|YP_003849195.1| - 6.8e-07 29.4 0.4 7e-07 29.3 0.4 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-T_C PF15511.6 gi|304314048|ref|YP_003849195.1| - 8.2e-07 29.1 0.1 8.2e-07 29.1 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID_20kDa PF03847.13 gi|304314048|ref|YP_003849195.1| - 4.7e-06 27.0 0.2 5.3e-06 26.8 0.2 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A CENP-S PF15630.6 gi|304314048|ref|YP_003849195.1| - 0.0001 22.6 0.0 0.00011 22.5 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein Bromo_TP PF07524.13 gi|304314048|ref|YP_003849195.1| - 0.00055 19.9 0.0 0.00063 19.7 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID-31kDa PF02291.15 gi|304314048|ref|YP_003849195.1| - 0.0026 17.8 0.0 0.0029 17.7 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit DUF1931 PF09123.11 gi|304314048|ref|YP_003849195.1| - 0.051 13.7 0.3 0.059 13.5 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) PTH2 PF01981.16 gi|304314049|ref|YP_003849196.1| - 5.9e-41 139.4 0.0 6.5e-41 139.3 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 AA_kinase PF00696.28 gi|304314050|ref|YP_003849197.1| - 3.4e-19 69.4 0.0 4.5e-14 52.6 0.0 2.1 1 1 1 2 2 2 2 Amino acid kinase family DUF1610 PF07754.11 gi|304314051|ref|YP_003849198.1| - 6.4e-06 26.0 1.4 6.4e-06 26.0 1.4 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|304314051|ref|YP_003849198.1| - 0.032 13.9 0.6 0.032 13.9 0.6 3.3 3 1 0 3 3 3 0 zinc-ribbon domain zf-CCHC_6 PF15288.6 gi|304314051|ref|YP_003849198.1| - 0.038 13.8 3.8 0.038 13.8 3.8 2.3 3 0 0 3 3 3 0 Zinc knuckle zinc-ribbons_6 PF07191.12 gi|304314051|ref|YP_003849198.1| - 0.046 13.7 9.0 0.061 13.3 9.0 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-ACC PF17848.1 gi|304314051|ref|YP_003849198.1| - 0.068 13.2 1.0 0.068 13.2 1.0 3.2 2 1 1 3 3 3 0 Acetyl-coA carboxylase zinc finger domain tRNA-synt_1g PF09334.11 gi|304314051|ref|YP_003849198.1| - 0.16 10.7 4.5 0.17 10.6 4.5 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) DUF1451 PF07295.11 gi|304314051|ref|YP_003849198.1| - 1.5 8.9 7.7 2.1 8.3 7.1 1.6 1 1 0 1 1 1 0 Zinc-ribbon containing domain Zn_ribbon_SprT PF17283.2 gi|304314051|ref|YP_003849198.1| - 3.8 7.5 20.0 6.6 6.7 1.3 3.9 2 1 1 3 3 3 0 SprT-like zinc ribbon domain zf-Mss51 PF13824.6 gi|304314051|ref|YP_003849198.1| - 3.8 7.7 9.7 0.89 9.7 5.5 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 RNHCP PF12647.7 gi|304314051|ref|YP_003849198.1| - 3.9 7.5 10.0 5.7 7.0 1.4 2.3 1 1 1 2 2 2 0 RNHCP domain DUF530 PF04409.12 gi|304314051|ref|YP_003849198.1| - 4.5 5.5 4.4 5 5.4 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF530) zinc_ribbon_10 PF10058.9 gi|304314051|ref|YP_003849198.1| - 4.6 7.0 14.6 0.19 11.5 1.5 3.0 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein EF1_GNE PF00736.19 gi|304314052|ref|YP_003849199.1| - 3.5e-21 75.2 0.2 3.9e-21 75.0 0.2 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain TctA PF01970.16 gi|304314053|ref|YP_003849200.1| - 8.4e-55 186.1 44.4 9.7e-55 185.9 44.4 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Methyltransf_25 PF13649.6 gi|304314054|ref|YP_003849201.1| - 1.3e-05 25.8 0.0 2.7e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|304314054|ref|YP_003849201.1| - 1.7e-05 24.5 0.0 3.7e-05 23.4 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|304314054|ref|YP_003849201.1| - 2.6e-05 23.7 0.0 3.8e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|304314054|ref|YP_003849201.1| - 6.5e-05 22.6 0.0 0.0001 21.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|304314054|ref|YP_003849201.1| - 8.6e-05 21.9 0.0 0.00015 21.1 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.6 gi|304314054|ref|YP_003849201.1| - 0.011 15.5 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|304314054|ref|YP_003849201.1| - 0.056 13.1 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F T2SSE PF00437.20 gi|304314055|ref|YP_003849202.1| - 8.3e-63 212.0 0.1 1.5e-62 211.2 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.18 gi|304314055|ref|YP_003849202.1| - 1.5e-05 24.5 0.5 0.0033 16.8 0.0 3.1 3 0 0 3 3 3 1 FtsK/SpoIIIE family Zeta_toxin PF06414.12 gi|304314055|ref|YP_003849202.1| - 0.0013 18.0 0.0 0.0046 16.2 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin ABC_tran PF00005.27 gi|304314055|ref|YP_003849202.1| - 0.0018 18.8 0.0 0.0049 17.4 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_19 PF13245.6 gi|304314055|ref|YP_003849202.1| - 0.045 14.1 0.3 0.12 12.7 0.3 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|304314055|ref|YP_003849202.1| - 0.1 12.4 0.1 0.23 11.3 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSF PF00482.23 gi|304314056|ref|YP_003849203.1| - 6.6e-23 81.0 0.9 6.6e-23 81.0 0.9 3.9 3 1 1 4 4 4 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|304314056|ref|YP_003849203.1| - 9.8e-09 34.5 0.9 0.0016 17.3 0.0 2.0 2 0 0 2 2 2 2 Predicted membrane protein (DUF2207) MgtE PF01769.16 gi|304314056|ref|YP_003849203.1| - 0.00075 19.9 3.6 0.99 9.8 2.9 2.2 2 0 0 2 2 2 2 Divalent cation transporter TrbL PF04610.14 gi|304314056|ref|YP_003849203.1| - 0.0021 17.9 11.2 0.049 13.4 3.4 2.1 2 0 0 2 2 2 2 TrbL/VirB6 plasmid conjugal transfer protein Phage_holin_3_6 PF07332.11 gi|304314056|ref|YP_003849203.1| - 0.028 14.4 6.3 0.95 9.5 0.2 2.5 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Spore_III_AB PF09548.10 gi|304314056|ref|YP_003849203.1| - 0.14 12.3 8.2 0.41 10.7 0.4 2.8 2 1 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) DUF2304 PF10066.9 gi|304314056|ref|YP_003849203.1| - 3.2 8.0 12.8 2.4 8.4 5.2 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) Calcyon PF06387.11 gi|304314056|ref|YP_003849203.1| - 6.3 6.7 5.4 0.38 10.7 0.1 1.6 2 0 0 2 2 2 0 D1 dopamine receptor-interacting protein (calcyon) ABC_tran PF00005.27 gi|304314057|ref|YP_003849204.1| - 1.3e-33 116.4 0.0 2.1e-33 115.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|304314057|ref|YP_003849204.1| - 9.8e-18 65.0 2.5 5.1e-13 49.5 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|304314057|ref|YP_003849204.1| - 8.7e-09 35.1 0.1 1e-07 31.6 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|304314057|ref|YP_003849204.1| - 6.7e-06 26.0 0.1 0.042 13.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|304314057|ref|YP_003849204.1| - 0.0028 17.4 0.0 0.0053 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MeaB PF03308.16 gi|304314057|ref|YP_003849204.1| - 0.0047 16.0 0.0 0.011 14.8 0.0 1.6 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SbcCD_C PF13558.6 gi|304314057|ref|YP_003849204.1| - 0.034 14.4 0.1 0.48 10.7 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|304314057|ref|YP_003849204.1| - 0.038 14.5 0.2 0.058 13.9 0.2 1.5 1 1 0 1 1 1 0 AAA domain FeoA PF04023.14 gi|304314057|ref|YP_003849204.1| - 0.053 13.8 1.2 0.92 9.8 0.1 3.0 3 0 0 3 3 3 0 FeoA domain AAA_18 PF13238.6 gi|304314057|ref|YP_003849204.1| - 0.065 13.8 0.2 4.4 7.8 0.2 3.0 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|304314057|ref|YP_003849204.1| - 0.082 12.8 0.1 0.18 11.7 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_25 PF13481.6 gi|304314057|ref|YP_003849204.1| - 0.098 12.2 0.0 0.25 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|304314057|ref|YP_003849204.1| - 0.1 13.0 0.0 0.14 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|304314057|ref|YP_003849204.1| - 0.13 12.0 0.0 0.29 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|304314057|ref|YP_003849204.1| - 0.17 12.0 0.0 0.4 10.8 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase RecA PF00154.21 gi|304314057|ref|YP_003849204.1| - 0.23 10.9 1.5 15 4.9 0.0 2.9 2 2 2 4 4 4 0 recA bacterial DNA recombination protein CbiQ PF02361.16 gi|304314058|ref|YP_003849205.1| - 1.4e-58 198.1 8.3 2.1e-58 197.5 8.3 1.2 1 0 0 1 1 1 1 Cobalt transport protein Ac81 PF05820.11 gi|304314058|ref|YP_003849205.1| - 0.43 10.1 1.9 1 8.9 1.9 1.6 1 0 0 1 1 1 0 Baculoviridae AC81 PDGLE PF13190.6 gi|304314059|ref|YP_003849206.1| - 2.6e-16 59.3 0.6 1.3e-15 57.0 0.6 1.8 1 1 0 1 1 1 1 PDGLE domain OppC_N PF12911.7 gi|304314059|ref|YP_003849206.1| - 0.011 15.7 1.0 0.013 15.4 0.0 1.6 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C CbiM PF01891.16 gi|304314060|ref|YP_003849207.1| - 2.8e-60 203.7 21.0 3.1e-60 203.6 21.0 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region UcrQ PF02939.16 gi|304314060|ref|YP_003849207.1| - 0.049 13.6 0.1 0.13 12.2 0.1 1.8 1 0 0 1 1 1 0 UcrQ family CitMHS PF03600.16 gi|304314060|ref|YP_003849207.1| - 0.5 9.5 20.3 0.73 9.0 20.3 1.2 1 0 0 1 1 1 0 Citrate transporter Prismane PF03063.20 gi|304314061|ref|YP_003849208.1| - 1.3e-100 337.6 4.8 1.2e-83 281.5 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_9 PF13187.6 gi|304314061|ref|YP_003849208.1| - 1.4e-07 31.6 9.2 1.4e-07 31.6 9.2 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314061|ref|YP_003849208.1| - 5.2e-06 26.9 12.0 0.0024 18.4 0.2 3.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314061|ref|YP_003849208.1| - 4.3e-05 24.0 8.4 4.3e-05 24.0 8.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314061|ref|YP_003849208.1| - 0.00025 21.1 8.5 0.00025 21.1 8.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|304314061|ref|YP_003849208.1| - 0.00061 20.6 2.9 0.46 11.4 0.3 3.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304314061|ref|YP_003849208.1| - 0.0015 18.9 11.5 0.0015 18.9 11.5 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|304314061|ref|YP_003849208.1| - 0.0045 16.7 1.9 0.0045 16.7 1.9 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304314061|ref|YP_003849208.1| - 0.022 15.7 11.7 0.061 14.3 0.2 3.9 4 0 0 4 4 4 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|304314061|ref|YP_003849208.1| - 0.99 10.1 10.7 1.7 9.3 1.8 3.2 2 0 0 2 2 2 0 4Fe-4S binding domain CO_dh PF02552.16 gi|304314062|ref|YP_003849209.1| - 1.1e-63 214.1 0.0 1.2e-63 213.9 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|304314062|ref|YP_003849209.1| - 6.3e-08 32.4 0.0 2.7e-07 30.4 0.0 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CdhC PF03598.15 gi|304314063|ref|YP_003849210.1| - 9.9e-63 210.6 0.5 1.5e-62 210.1 0.5 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit DNA_pol3_a_NII PF11490.8 gi|304314063|ref|YP_003849210.1| - 0.65 9.9 6.0 1.4 8.8 0.0 3.0 2 1 1 3 3 3 0 DNA polymerase III polC-type N-terminus II CbiA PF01656.23 gi|304314064|ref|YP_003849211.1| - 3.1e-22 79.0 0.0 4.1e-22 78.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|304314064|ref|YP_003849211.1| - 8.4e-16 58.4 0.0 1.5e-15 57.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|304314064|ref|YP_003849211.1| - 2.6e-12 46.7 0.6 7.8e-11 41.9 0.6 2.4 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|304314064|ref|YP_003849211.1| - 2.2e-09 37.1 0.0 1.2e-08 34.7 0.0 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|304314064|ref|YP_003849211.1| - 2.7e-09 36.6 2.7 9.6e-09 34.8 1.5 2.3 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|304314064|ref|YP_003849211.1| - 1.2e-06 28.1 0.1 0.00034 20.1 0.0 2.3 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|304314064|ref|YP_003849211.1| - 1.7e-05 24.2 1.2 0.068 12.4 0.4 2.2 2 0 0 2 2 2 2 ATPase MipZ AAA_24 PF13479.6 gi|304314064|ref|YP_003849211.1| - 0.0012 18.6 0.0 0.0047 16.7 0.0 1.9 1 1 1 2 2 2 1 AAA domain SRP54 PF00448.22 gi|304314064|ref|YP_003849211.1| - 0.0086 15.7 0.5 2.1 7.9 0.3 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|304314064|ref|YP_003849211.1| - 0.0095 15.5 1.9 0.038 13.6 1.0 2.3 1 1 1 2 2 2 1 AAA domain Toprim PF01751.22 gi|304314064|ref|YP_003849211.1| - 0.028 14.7 0.0 0.076 13.2 0.0 1.8 1 1 0 1 1 1 0 Toprim domain AAA_16 PF13191.6 gi|304314064|ref|YP_003849211.1| - 0.031 14.7 0.0 0.043 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|304314064|ref|YP_003849211.1| - 0.037 13.8 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_26 PF13500.6 gi|304314064|ref|YP_003849211.1| - 0.042 13.7 2.9 3.6 7.4 0.5 2.8 2 1 0 2 2 2 0 AAA domain VirC1 PF07015.11 gi|304314064|ref|YP_003849211.1| - 0.051 12.9 0.1 0.96 8.7 0.1 2.2 2 0 0 2 2 2 0 VirC1 protein PIF1 PF05970.14 gi|304314064|ref|YP_003849211.1| - 0.11 11.7 0.1 0.19 10.9 0.1 1.4 1 0 0 1 1 1 0 PIF1-like helicase PRK PF00485.18 gi|304314064|ref|YP_003849211.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family XdhC_C PF13478.6 gi|304314064|ref|YP_003849211.1| - 0.14 12.7 0.0 2.8 8.5 0.0 2.2 1 1 0 1 1 1 0 XdhC Rossmann domain AAA_22 PF13401.6 gi|304314064|ref|YP_003849211.1| - 0.14 12.5 0.0 0.36 11.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|304314064|ref|YP_003849211.1| - 0.15 11.3 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MobB PF03205.14 gi|304314064|ref|YP_003849211.1| - 0.15 11.9 0.0 0.37 10.7 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.17 gi|304314064|ref|YP_003849211.1| - 0.2 11.7 1.2 1 9.4 0.6 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain CdhD PF03599.16 gi|304314065|ref|YP_003849212.1| - 2.1e-94 316.4 0.3 2.4e-87 293.2 0.0 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit CdhD PF03599.16 gi|304314066|ref|YP_003849213.1| - 5.3e-154 512.6 0.0 6.2e-154 512.4 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|304314066|ref|YP_003849213.1| - 5.8e-15 54.7 1.4 1.1e-14 53.8 1.4 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster Fer4 PF00037.27 gi|304314067|ref|YP_003849214.1| - 1.7e-12 46.6 37.8 3.3e-07 29.9 4.0 5.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304314067|ref|YP_003849214.1| - 2.3e-12 46.4 41.9 6.7e-07 29.1 3.4 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_11 PF13247.6 gi|304314067|ref|YP_003849214.1| - 1.5e-09 37.9 15.4 1.5e-09 37.9 15.4 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314067|ref|YP_003849214.1| - 2.3e-09 37.3 29.5 4.7e-06 26.7 10.2 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304314067|ref|YP_003849214.1| - 2.4e-09 36.7 32.3 5.9e-05 22.9 1.6 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304314067|ref|YP_003849214.1| - 2.7e-09 37.0 33.1 2e-06 27.8 12.2 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314067|ref|YP_003849214.1| - 8.9e-09 35.8 29.9 0.0024 18.4 11.0 4.3 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314067|ref|YP_003849214.1| - 8e-07 29.1 30.7 0.0014 18.7 9.6 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314067|ref|YP_003849214.1| - 5e-05 24.2 27.4 0.084 13.8 6.5 4.5 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|304314067|ref|YP_003849214.1| - 6.7e-05 23.1 33.4 0.037 14.5 1.8 4.5 4 2 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|304314067|ref|YP_003849214.1| - 0.0082 17.0 42.3 0.28 12.2 5.0 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304314067|ref|YP_003849214.1| - 0.077 13.5 3.3 0.077 13.5 3.3 4.2 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|304314067|ref|YP_003849214.1| - 0.57 11.0 30.3 14 6.5 11.9 4.3 2 2 0 2 2 2 0 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|304314067|ref|YP_003849214.1| - 3.2 7.9 7.8 0.11 12.6 1.7 1.9 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_17 PF13534.6 gi|304314067|ref|YP_003849214.1| - 8.9 7.0 30.4 0.34 11.5 2.4 4.5 2 1 1 5 5 5 0 4Fe-4S dicluster domain HEAT_2 PF13646.6 gi|304314068|ref|YP_003849215.1| - 2.7e-51 171.9 14.7 2.3e-18 66.4 0.1 4.2 3 1 1 4 4 4 4 HEAT repeats HEAT_PBS PF03130.16 gi|304314068|ref|YP_003849215.1| - 3.7e-32 107.7 15.9 1.9e-06 28.0 0.1 8.5 8 1 0 8 8 8 7 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|304314068|ref|YP_003849215.1| - 3.5e-30 101.5 10.6 0.0028 17.8 0.0 9.3 9 0 0 9 9 9 8 HEAT repeat Cnd1 PF12717.7 gi|304314068|ref|YP_003849215.1| - 7.7e-09 35.8 5.6 0.24 11.4 0.0 6.3 3 2 2 5 5 5 2 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|304314068|ref|YP_003849215.1| - 6.4e-06 26.5 17.3 0.19 12.3 1.4 7.7 6 2 2 8 8 8 2 HEAT-like repeat Arm PF00514.23 gi|304314068|ref|YP_003849215.1| - 0.00046 20.1 6.2 2.5 8.3 0.0 5.7 4 2 2 6 6 6 1 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|304314068|ref|YP_003849215.1| - 0.00054 18.7 0.0 1.7 7.1 0.1 3.4 1 1 1 3 3 3 2 Adaptin N terminal region RasGEF_N_2 PF14663.6 gi|304314068|ref|YP_003849215.1| - 0.0086 16.5 0.3 1.1e+02 3.2 0.0 4.8 3 1 2 6 6 6 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain TetR_C_16 PF17920.1 gi|304314068|ref|YP_003849215.1| - 0.096 12.9 1.8 2.3 8.5 0.1 3.2 3 1 1 4 4 4 0 Tetracyclin repressor-like, C-terminal domain ALF PF03752.13 gi|304314068|ref|YP_003849215.1| - 1.8 8.6 6.9 0.77 9.8 0.3 3.4 4 0 0 4 4 4 0 Short repeats of unknown function Trp_halogenase PF04820.14 gi|304314069|ref|YP_003849216.1| - 4.9e-12 45.5 0.0 6.7e-10 38.4 0.0 2.0 2 0 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|304314069|ref|YP_003849216.1| - 8.3e-11 41.9 0.0 1.1e-10 41.5 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|304314069|ref|YP_003849216.1| - 1.1e-08 35.1 0.6 0.0024 17.5 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|304314069|ref|YP_003849216.1| - 4.7e-08 32.5 0.5 0.00031 20.0 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|304314069|ref|YP_003849216.1| - 3e-07 29.9 0.0 0.011 14.9 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|304314069|ref|YP_003849216.1| - 3.8e-07 29.7 0.9 0.0047 16.2 0.0 3.0 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|304314069|ref|YP_003849216.1| - 0.00018 20.3 0.3 0.00033 19.5 0.3 1.4 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|304314069|ref|YP_003849216.1| - 0.00076 19.7 0.3 0.0021 18.2 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|304314069|ref|YP_003849216.1| - 0.0011 18.2 0.4 0.0032 16.6 0.3 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|304314069|ref|YP_003849216.1| - 0.0024 17.2 0.2 0.07 12.4 0.1 2.2 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.14 gi|304314069|ref|YP_003849216.1| - 0.0047 16.2 0.3 0.022 14.0 0.1 2.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|304314069|ref|YP_003849216.1| - 0.057 12.5 0.0 0.089 11.8 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase Metallophos PF00149.28 gi|304314070|ref|YP_003849217.1| - 1.7e-18 67.9 2.0 4.3e-18 66.6 2.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|304314070|ref|YP_003849217.1| - 2.8e-14 53.6 0.7 5.6e-14 52.7 0.7 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|304314070|ref|YP_003849217.1| - 0.003 16.9 0.0 0.009 15.4 0.0 1.7 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily DPM3 PF08285.11 gi|304314071|ref|YP_003849218.1| - 0.33 11.2 0.1 0.33 11.2 0.1 2.7 3 1 0 3 3 3 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Tmemb_18A PF09771.9 gi|304314071|ref|YP_003849218.1| - 0.99 9.8 4.8 0.43 11.0 0.1 2.1 1 1 1 2 2 2 0 Transmembrane protein 188 CrgA PF06781.12 gi|304314071|ref|YP_003849218.1| - 4.8 7.3 11.0 0.19 11.8 0.3 2.7 3 0 0 3 3 3 0 Cell division protein CrgA PhoU PF01895.19 gi|304314072|ref|YP_003849219.1| - 7.8e-27 93.6 9.9 1.4e-15 57.5 1.2 2.4 2 0 0 2 2 2 2 PhoU domain HTH_24 PF13412.6 gi|304314072|ref|YP_003849219.1| - 3.7e-07 29.6 0.2 7e-07 28.7 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|304314072|ref|YP_003849219.1| - 1.3e-06 28.3 0.2 4.1e-06 26.7 0.0 1.9 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|304314072|ref|YP_003849219.1| - 8e-06 25.7 0.0 1.6e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|304314072|ref|YP_003849219.1| - 8.6e-05 22.4 0.1 0.00025 20.9 0.0 1.8 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|304314072|ref|YP_003849219.1| - 0.00013 21.8 0.0 0.00035 20.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|304314072|ref|YP_003849219.1| - 0.00025 21.3 0.0 0.00063 20.1 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator TFIIE_alpha PF02002.17 gi|304314072|ref|YP_003849219.1| - 0.00087 19.1 0.2 0.0034 17.2 0.2 2.1 1 1 0 1 1 1 1 TFIIE alpha subunit Sigma70_r4 PF04545.16 gi|304314072|ref|YP_003849219.1| - 0.0016 17.9 0.0 0.0065 16.0 0.0 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|304314072|ref|YP_003849219.1| - 0.0052 16.7 0.2 0.011 15.7 0.2 1.6 1 0 0 1 1 1 1 HTH domain FaeA PF04703.12 gi|304314072|ref|YP_003849219.1| - 0.017 15.4 0.3 0.043 14.2 0.1 1.8 2 0 0 2 2 1 0 FaeA-like protein HTH_3 PF01381.22 gi|304314072|ref|YP_003849219.1| - 0.029 14.4 0.1 0.06 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_23 PF13384.6 gi|304314072|ref|YP_003849219.1| - 0.03 14.1 0.1 0.1 12.4 0.0 1.9 2 0 0 2 2 1 0 Homeodomain-like domain HTH_IclR PF09339.10 gi|304314072|ref|YP_003849219.1| - 0.058 13.2 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|304314072|ref|YP_003849219.1| - 0.067 13.3 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.7 gi|304314072|ref|YP_003849219.1| - 0.073 13.1 0.0 0.2 11.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Mga PF08280.11 gi|304314072|ref|YP_003849219.1| - 0.079 13.0 0.4 2.7 8.1 0.1 2.8 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain MCM_N PF14551.6 gi|304314072|ref|YP_003849219.1| - 1.3 9.7 4.2 1.2 9.8 0.4 2.4 1 1 0 2 2 2 0 MCM N-terminal domain Citrate_synt PF00285.21 gi|304314073|ref|YP_003849220.1| - 2.6e-43 148.5 0.0 1.4e-35 123.0 0.0 2.1 1 1 1 2 2 2 2 Citrate synthase, C-terminal domain PBP_like_2 PF12849.7 gi|304314074|ref|YP_003849221.1| - 1.3e-46 159.5 4.0 2.4e-46 158.7 4.0 1.3 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|304314074|ref|YP_003849221.1| - 6.1e-25 87.5 0.2 7.7e-25 87.1 0.2 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|304314074|ref|YP_003849221.1| - 6.4e-15 55.5 0.0 9.3e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|304314074|ref|YP_003849221.1| - 2.7e-10 40.7 6.7 6e-10 39.6 6.7 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|304314074|ref|YP_003849221.1| - 0.0013 18.6 1.5 0.85 9.4 0.0 2.7 1 1 0 2 2 2 2 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|304314074|ref|YP_003849221.1| - 0.0015 17.9 0.0 0.009 15.4 0.0 2.1 1 1 0 1 1 1 1 LysR substrate binding domain SBP_bac_6 PF13343.6 gi|304314074|ref|YP_003849221.1| - 0.0045 16.4 0.2 0.021 14.3 0.0 2.0 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein AnfO_nitrog PF09582.10 gi|304314074|ref|YP_003849221.1| - 0.11 11.8 0.2 0.31 10.4 0.1 1.8 1 1 0 1 1 1 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) PBP_like_2 PF12849.7 gi|304314075|ref|YP_003849222.1| - 1.2e-46 159.7 0.1 2e-46 158.9 0.1 1.3 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|304314075|ref|YP_003849222.1| - 4.5e-22 78.1 0.0 5.5e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|304314075|ref|YP_003849222.1| - 8.4e-13 48.6 0.0 1.2e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|304314075|ref|YP_003849222.1| - 8e-06 26.0 0.2 0.00014 21.9 0.2 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|304314075|ref|YP_003849222.1| - 0.0059 16.0 0.0 0.012 15.0 0.0 1.6 1 1 0 1 1 1 1 LysR substrate binding domain SBP_bac_8 PF13416.6 gi|304314075|ref|YP_003849222.1| - 0.0095 15.8 0.0 0.19 11.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|304314075|ref|YP_003849222.1| - 0.024 14.1 0.1 0.05 13.0 0.0 1.7 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein SH3_18 PF18354.1 gi|304314075|ref|YP_003849222.1| - 0.069 13.2 0.1 0.17 11.9 0.1 1.7 1 1 0 1 1 1 0 CarS bacterial SH3 domain BPD_transp_1 PF00528.22 gi|304314076|ref|YP_003849223.1| - 9.4e-31 107.0 20.2 9.4e-31 107.0 20.2 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0239 PF06783.11 gi|304314076|ref|YP_003849223.1| - 0.041 14.1 0.1 0.041 14.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0239) MgtC PF02308.16 gi|304314076|ref|YP_003849223.1| - 2.5 8.5 20.6 0.098 13.0 5.5 3.1 3 1 0 3 3 3 0 MgtC family BPD_transp_1 PF00528.22 gi|304314077|ref|YP_003849224.1| - 1.3e-29 103.2 15.6 1.3e-29 103.2 15.6 2.0 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|304314078|ref|YP_003849225.1| - 2.3e-31 109.1 0.0 3.2e-31 108.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|304314078|ref|YP_003849225.1| - 8.3e-12 45.5 0.0 0.00013 21.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|304314078|ref|YP_003849225.1| - 2.2e-08 33.8 0.0 0.00014 21.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|304314078|ref|YP_003849225.1| - 0.00018 21.8 0.0 0.0004 20.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|304314078|ref|YP_003849225.1| - 0.00038 20.4 0.0 0.00087 19.2 0.0 1.6 2 0 0 2 2 1 1 RsgA GTPase AAA_15 PF13175.6 gi|304314078|ref|YP_003849225.1| - 0.0006 19.6 0.0 0.00091 19.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|304314078|ref|YP_003849225.1| - 0.001 18.7 0.0 0.0019 17.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|304314078|ref|YP_003849225.1| - 0.0032 17.4 0.0 0.0056 16.6 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|304314078|ref|YP_003849225.1| - 0.0052 17.2 0.1 0.017 15.5 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|304314078|ref|YP_003849225.1| - 0.01 16.4 0.0 0.024 15.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|304314078|ref|YP_003849225.1| - 0.011 15.3 0.0 0.031 13.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|304314078|ref|YP_003849225.1| - 0.013 16.1 0.0 0.025 15.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|304314078|ref|YP_003849225.1| - 0.014 15.5 0.0 0.048 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|304314078|ref|YP_003849225.1| - 0.02 14.6 0.2 0.047 13.4 0.0 1.7 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.22 gi|304314078|ref|YP_003849225.1| - 0.038 14.4 0.0 0.091 13.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Adeno_IVa2 PF02456.15 gi|304314078|ref|YP_003849225.1| - 0.058 12.2 0.0 0.65 8.7 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein NB-ARC PF00931.22 gi|304314078|ref|YP_003849225.1| - 0.069 12.3 0.0 0.079 12.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 gi|304314078|ref|YP_003849225.1| - 0.071 12.8 0.0 0.65 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|304314078|ref|YP_003849225.1| - 0.077 13.2 0.0 0.24 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|304314078|ref|YP_003849225.1| - 0.081 12.1 0.0 0.1 11.7 0.0 1.5 1 1 0 1 1 1 0 G-protein alpha subunit AAA PF00004.29 gi|304314078|ref|YP_003849225.1| - 0.082 13.3 0.1 0.88 10.0 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|304314078|ref|YP_003849225.1| - 0.09 12.8 0.0 0.31 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PRK PF00485.18 gi|304314078|ref|YP_003849225.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.6 gi|304314078|ref|YP_003849225.1| - 0.16 12.0 0.1 0.48 10.5 0.0 1.9 3 0 0 3 3 2 0 AAA domain ATPase_2 PF01637.18 gi|304314078|ref|YP_003849225.1| - 0.17 11.8 0.5 1.1 9.1 0.5 2.1 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea PPV_E1_C PF00519.17 gi|304314078|ref|YP_003849225.1| - 0.19 10.5 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase PhoU PF01895.19 gi|304314079|ref|YP_003849226.1| - 1.8e-16 60.3 8.4 6.3e-13 49.0 2.7 2.4 2 1 0 2 2 2 2 PhoU domain FtsA PF14450.6 gi|304314079|ref|YP_003849226.1| - 0.048 14.1 0.2 0.067 13.6 0.2 1.4 1 1 0 1 1 1 0 Cell division protein FtsA DUF1451 PF07295.11 gi|304314079|ref|YP_003849226.1| - 0.083 12.9 0.4 0.31 11.1 0.1 2.0 2 0 0 2 2 2 0 Zinc-ribbon containing domain DUF2226 PF09987.9 gi|304314080|ref|YP_003849227.1| - 2.1e-11 43.7 3.0 5.5e-07 29.2 0.3 2.0 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2226) PhoU PF01895.19 gi|304314081|ref|YP_003849228.1| - 2.9e-31 107.8 10.4 5.7e-17 61.9 1.9 2.1 2 0 0 2 2 2 2 PhoU domain Fib_alpha PF08702.10 gi|304314081|ref|YP_003849228.1| - 0.99 9.6 4.2 1.4 9.1 2.9 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Fumerase PF05681.14 gi|304314082|ref|YP_003849229.1| - 4.3e-93 311.6 0.1 4.9e-93 311.5 0.1 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fer4 PF00037.27 gi|304314083|ref|YP_003849230.1| - 2.6e-18 65.0 34.7 2.8e-09 36.4 4.8 5.8 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304314083|ref|YP_003849230.1| - 9.5e-13 47.6 38.6 2.7e-06 27.2 3.1 4.8 4 2 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|304314083|ref|YP_003849230.1| - 2.7e-11 43.5 24.8 1.3e-05 25.2 7.8 3.4 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314083|ref|YP_003849230.1| - 4.2e-11 43.6 27.0 0.0063 17.4 5.3 4.5 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|304314083|ref|YP_003849230.1| - 3.1e-10 40.3 37.7 0.0022 18.8 4.1 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304314083|ref|YP_003849230.1| - 3.9e-10 40.2 29.9 1.7e-06 28.5 10.3 3.5 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304314083|ref|YP_003849230.1| - 1.4e-08 34.4 34.6 3.6e-06 26.7 2.1 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304314083|ref|YP_003849230.1| - 1.4e-07 31.5 32.1 2.8e-05 24.1 10.4 3.4 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314083|ref|YP_003849230.1| - 2.4e-07 30.8 33.6 2.5e-05 24.3 11.2 3.7 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304314083|ref|YP_003849230.1| - 1.4e-06 28.4 36.1 0.00086 19.6 3.5 5.0 3 1 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|304314083|ref|YP_003849230.1| - 0.0057 17.2 1.0 0.0057 17.2 1.0 4.3 3 1 2 5 5 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304314083|ref|YP_003849230.1| - 0.0087 16.5 27.8 0.27 11.7 1.7 4.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304314083|ref|YP_003849230.1| - 0.031 14.8 2.3 0.031 14.8 2.3 4.6 4 2 1 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|304314084|ref|YP_003849231.1| - 2.6e-14 52.6 35.6 3.1e-08 33.3 2.1 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|304314084|ref|YP_003849231.1| - 2.5e-13 49.2 39.2 1.1e-09 37.6 3.8 5.4 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304314084|ref|YP_003849231.1| - 7.1e-11 41.5 31.7 5.7e-06 26.1 1.8 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304314084|ref|YP_003849231.1| - 8e-11 42.4 28.9 2.5e-05 24.8 1.2 4.1 3 2 1 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314084|ref|YP_003849231.1| - 5.6e-09 36.0 33.8 4.6e-06 26.7 11.5 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304314084|ref|YP_003849231.1| - 1.1e-08 35.5 37.3 0.00028 21.6 4.7 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|304314084|ref|YP_003849231.1| - 1.7e-07 31.3 32.9 0.00093 19.3 10.9 3.8 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|304314084|ref|YP_003849231.1| - 4.3e-07 30.0 14.5 4.3e-07 30.0 14.5 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304314084|ref|YP_003849231.1| - 4.7e-07 29.8 31.0 0.00021 21.5 1.5 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304314084|ref|YP_003849231.1| - 3e-06 28.1 28.1 0.02 15.8 4.2 4.3 2 1 2 4 4 4 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|304314084|ref|YP_003849231.1| - 8.1e-05 22.7 29.2 0.00036 20.6 3.2 3.5 1 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314084|ref|YP_003849231.1| - 0.00086 19.8 26.6 0.038 14.5 1.4 4.4 2 1 4 6 6 6 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|304314084|ref|YP_003849231.1| - 0.025 15.3 20.8 0.52 11.1 7.3 4.0 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|304314084|ref|YP_003849231.1| - 0.11 13.0 32.2 0.87 10.1 10.5 4.2 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|304314084|ref|YP_003849231.1| - 0.22 12.4 1.2 0.22 12.4 1.2 3.7 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304314084|ref|YP_003849231.1| - 10 6.8 26.4 2.6 8.6 8.8 3.9 2 2 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I TPP_enzyme_C PF02775.21 gi|304314085|ref|YP_003849232.1| - 2.1e-30 105.5 0.2 4.6e-30 104.4 0.0 1.6 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|304314085|ref|YP_003849232.1| - 0.12 11.5 0.2 0.26 10.5 0.2 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.19 gi|304314086|ref|YP_003849233.1| - 2.6e-71 240.1 0.2 3.4e-71 239.7 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|304314086|ref|YP_003849233.1| - 3.8e-32 110.6 0.0 1e-31 109.2 0.0 1.8 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|304314086|ref|YP_003849233.1| - 4.6e-07 29.8 0.1 1.8e-06 27.9 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|304314087|ref|YP_003849234.1| - 2.8e-14 52.2 19.8 6.8e-09 35.2 5.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304314087|ref|YP_003849234.1| - 9.5e-10 38.1 18.6 4.5e-05 23.3 4.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304314087|ref|YP_003849234.1| - 2.6e-09 36.6 9.3 0.00013 21.9 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304314087|ref|YP_003849234.1| - 5e-09 36.2 15.6 8.9e-09 35.3 15.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314087|ref|YP_003849234.1| - 2.8e-08 34.2 11.2 1.9e-05 25.1 13.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314087|ref|YP_003849234.1| - 4.4e-08 33.9 14.0 0.00019 22.3 3.1 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|304314087|ref|YP_003849234.1| - 7.1e-08 32.5 24.4 5.7e-05 23.2 14.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314087|ref|YP_003849234.1| - 9.7e-08 32.0 26.0 2.2e-05 24.5 15.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304314087|ref|YP_003849234.1| - 0.00031 21.0 16.0 0.0056 17.1 4.2 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|304314087|ref|YP_003849234.1| - 0.0011 19.1 5.3 0.0012 19.0 5.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304314087|ref|YP_003849234.1| - 0.0014 19.2 16.9 0.019 15.5 5.3 2.6 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|304314087|ref|YP_003849234.1| - 0.007 16.8 13.4 0.1 13.0 4.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|304314087|ref|YP_003849234.1| - 0.015 16.1 12.4 0.4 11.6 3.7 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314087|ref|YP_003849234.1| - 0.03 14.9 13.7 0.18 12.4 2.4 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|304314087|ref|YP_003849234.1| - 0.05 14.3 19.0 0.099 13.4 3.7 2.9 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|304314087|ref|YP_003849234.1| - 0.28 12.2 19.2 0.77 10.8 5.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.18 gi|304314088|ref|YP_003849235.1| - 1.1e-43 149.3 0.5 1.4e-43 149.0 0.5 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Torsin PF06309.11 gi|304314088|ref|YP_003849235.1| - 0.11 12.5 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Torsin DUF4346 PF14251.6 gi|304314089|ref|YP_003849236.1| - 1.9e-11 44.0 0.0 3.9e-11 43.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|304314089|ref|YP_003849236.1| - 3.5e-09 36.7 0.0 7.5e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 Pterin binding enzyme Polysacc_deac_1 PF01522.21 gi|304314089|ref|YP_003849236.1| - 0.023 14.6 0.0 2.2 8.2 0.0 2.4 2 0 0 2 2 2 0 Polysaccharide deacetylase ATP_bind_3 PF01171.20 gi|304314090|ref|YP_003849237.1| - 2.1e-13 50.5 0.0 2.9e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 PP-loop family zn-ribbon_14 PF16503.5 gi|304314090|ref|YP_003849237.1| - 3.9e-06 26.3 0.6 3.9e-06 26.3 0.6 3.2 3 0 0 3 3 3 1 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|304314090|ref|YP_003849237.1| - 0.0037 16.1 0.0 0.0054 15.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|304314090|ref|YP_003849237.1| - 0.0074 15.4 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|304314090|ref|YP_003849237.1| - 0.084 12.5 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase zf-C4pol PF14260.6 gi|304314090|ref|YP_003849237.1| - 8.1 7.0 8.3 15 6.1 1.0 2.8 3 0 0 3 3 3 0 C4-type zinc-finger of DNA polymerase delta ThiS PF02597.20 gi|304314091|ref|YP_003849238.1| - 2.2e-08 34.6 0.4 2.4e-08 34.5 0.4 1.0 1 0 0 1 1 1 1 ThiS family TilS_C PF11734.8 gi|304314091|ref|YP_003849238.1| - 0.037 13.4 0.0 0.053 12.9 0.0 1.2 1 0 0 1 1 1 0 TilS substrate C-terminal domain Pox_VLTF3 PF04947.14 gi|304314091|ref|YP_003849238.1| - 0.044 13.5 0.3 0.055 13.2 0.3 1.1 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like GNAT_acetyltr_2 PF13718.6 gi|304314091|ref|YP_003849238.1| - 0.11 11.9 0.3 0.12 11.7 0.3 1.0 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DUF89 PF01937.19 gi|304314092|ref|YP_003849239.1| - 2e-51 175.0 0.0 2.3e-51 174.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Transcrip_reg PF01709.20 gi|304314092|ref|YP_003849239.1| - 0.063 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Thioredoxin_2 PF13098.6 gi|304314093|ref|YP_003849240.1| - 1.9e-15 57.3 0.0 2.8e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.6 gi|304314093|ref|YP_003849240.1| - 1.4e-14 54.0 0.0 2e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|304314093|ref|YP_003849240.1| - 7e-11 42.0 0.0 8.8e-11 41.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredox_DsbH PF03190.15 gi|304314093|ref|YP_003849240.1| - 7.8e-10 38.9 0.0 9.1e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_8 PF13905.6 gi|304314093|ref|YP_003849240.1| - 0.00031 21.0 0.0 0.23 11.8 0.0 2.4 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|304314093|ref|YP_003849240.1| - 0.00035 20.5 0.0 0.00075 19.5 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin domain Redoxin PF08534.10 gi|304314093|ref|YP_003849240.1| - 0.0016 18.1 0.1 0.045 13.5 0.0 2.1 1 1 1 2 2 2 1 Redoxin AhpC-TSA PF00578.21 gi|304314093|ref|YP_003849240.1| - 0.004 17.1 0.1 0.11 12.4 0.1 2.3 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_9 PF14595.6 gi|304314093|ref|YP_003849240.1| - 0.011 15.4 0.2 0.034 13.9 0.2 1.8 1 1 0 1 1 1 0 Thioredoxin DUF953 PF06110.11 gi|304314093|ref|YP_003849240.1| - 0.024 14.2 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) DUF929 PF06053.11 gi|304314093|ref|YP_003849240.1| - 0.088 12.1 0.2 0.3 10.4 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF929) Pox_E10 PF04805.12 gi|304314093|ref|YP_003849240.1| - 0.11 12.4 0.1 0.17 11.8 0.1 1.3 1 0 0 1 1 1 0 E10-like protein conserved region Thioredoxin_4 PF13462.6 gi|304314093|ref|YP_003849240.1| - 0.12 12.5 0.3 2.6 8.2 0.1 2.5 1 1 0 1 1 1 0 Thioredoxin GRDA PF04723.14 gi|304314093|ref|YP_003849240.1| - 0.19 11.5 0.2 0.33 10.7 0.0 1.4 2 0 0 2 2 2 0 Glycine reductase complex selenoprotein A DsbD PF02683.15 gi|304314094|ref|YP_003849241.1| - 2.7e-17 63.4 20.0 1.3e-16 61.1 20.0 2.1 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2070 PF09843.9 gi|304314094|ref|YP_003849241.1| - 0.15 10.3 13.3 0.18 10.0 13.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF1932 PF09130.11 gi|304314095|ref|YP_003849242.1| - 8e-10 38.5 0.3 1.9e-09 37.3 0.3 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1932) F420_oxidored PF03807.17 gi|304314095|ref|YP_003849242.1| - 4.1e-08 33.7 0.9 7.5e-08 32.9 0.2 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|304314095|ref|YP_003849242.1| - 4.8e-06 26.8 1.1 8.8e-06 26.0 1.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|304314095|ref|YP_003849242.1| - 0.00038 20.1 0.1 0.00077 19.1 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain PDH PF02153.17 gi|304314095|ref|YP_003849242.1| - 0.0057 15.7 0.1 0.0089 15.0 0.1 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase LpxI_N PF17930.1 gi|304314095|ref|YP_003849242.1| - 0.022 14.7 0.6 0.4 10.6 0.3 2.8 1 1 1 2 2 2 0 LpxI N-terminal domain Shikimate_DH PF01488.20 gi|304314095|ref|YP_003849242.1| - 0.049 13.7 1.8 0.14 12.2 0.0 2.4 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|304314095|ref|YP_003849242.1| - 0.072 12.5 0.6 0.36 10.1 0.1 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|304314095|ref|YP_003849242.1| - 0.081 13.4 0.3 0.22 12.0 0.1 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding HIGH_NTase1_ass PF16581.5 gi|304314097|ref|YP_003849244.1| - 1.4e-13 51.3 0.7 2.3e-13 50.6 0.7 1.3 1 0 0 1 1 1 1 Cytidyltransferase-related C-terminal region HIGH_NTase1 PF05636.11 gi|304314097|ref|YP_003849244.1| - 6.7e-09 35.4 0.1 9e-05 21.9 0.0 2.1 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase CTP_transf_like PF01467.26 gi|304314097|ref|YP_003849244.1| - 3.2e-06 27.4 0.0 9.1e-06 25.9 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|304314097|ref|YP_003849244.1| - 0.0051 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 FAD synthetase DAP3 PF10236.9 gi|304314097|ref|YP_003849244.1| - 0.24 10.5 0.0 0.33 10.1 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 DUF3020 PF11223.8 gi|304314098|ref|YP_003849245.1| - 0.042 14.4 1.9 0.063 13.8 1.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3020) Radical_SAM_C PF16199.5 gi|304314098|ref|YP_003849245.1| - 0.077 13.0 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|304314098|ref|YP_003849245.1| - 0.1 13.0 0.1 0.16 12.3 0.1 1.5 1 1 0 1 1 1 0 Radical SAM superfamily Bac_luciferase PF00296.20 gi|304314099|ref|YP_003849246.1| - 3.4e-60 204.1 0.1 4.1e-60 203.8 0.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Nitro_FeMo-Co PF02579.17 gi|304314099|ref|YP_003849246.1| - 0.008 16.5 0.1 5.6 7.4 0.1 2.6 2 0 0 2 2 2 2 Dinitrogenase iron-molybdenum cofactor Glyco_transf_20 PF00982.21 gi|304314100|ref|YP_003849247.1| - 1.3e-134 449.5 0.0 1.4e-134 449.3 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Pox_Rif PF03340.13 gi|304314100|ref|YP_003849247.1| - 0.048 12.1 0.0 0.069 11.6 0.0 1.2 1 0 0 1 1 1 0 Poxvirus rifampicin resistance protein PGM_PMM_I PF02878.16 gi|304314101|ref|YP_003849248.1| - 6.5e-24 84.2 0.0 3.3e-23 81.9 0.0 2.0 1 1 1 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|304314101|ref|YP_003849248.1| - 2.2e-12 47.5 0.0 5.3e-12 46.3 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|304314101|ref|YP_003849248.1| - 3.2e-12 46.6 0.0 6e-12 45.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|304314101|ref|YP_003849248.1| - 3.6e-09 36.7 0.1 1.6e-08 34.6 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain NTP_transferase PF00483.23 gi|304314102|ref|YP_003849249.1| - 9.4e-19 68.0 0.0 1.2e-18 67.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|304314102|ref|YP_003849249.1| - 7.2e-16 57.2 13.5 8.9e-08 31.6 1.3 4.3 2 2 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 gi|304314102|ref|YP_003849249.1| - 0.00019 19.8 0.7 0.0003 19.1 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|304314102|ref|YP_003849249.1| - 0.055 12.4 1.1 0.14 11.1 1.1 1.6 1 1 0 1 1 1 0 L-fucokinase Hexapep_2 PF14602.6 gi|304314102|ref|YP_003849249.1| - 0.27 11.0 16.9 1.6 8.6 2.5 4.4 2 2 2 4 4 4 0 Hexapeptide repeat of succinyl-transferase NTP_transferase PF00483.23 gi|304314103|ref|YP_003849250.1| - 1.1e-21 77.6 0.0 1.3e-21 77.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|304314103|ref|YP_003849250.1| - 3.2e-12 47.1 0.0 3.6e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|304314103|ref|YP_003849250.1| - 0.016 15.1 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Trehalose_PPase PF02358.16 gi|304314104|ref|YP_003849251.1| - 7.7e-49 165.9 0.0 9.1e-49 165.7 0.0 1.0 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 gi|304314104|ref|YP_003849251.1| - 0.0052 16.5 0.0 0.012 15.4 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|304314104|ref|YP_003849251.1| - 0.11 12.0 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase DUF2115 PF09888.9 gi|304314105|ref|YP_003849252.1| - 0.11 13.0 0.0 0.33 11.5 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2115) MutS_V PF00488.21 gi|304314106|ref|YP_003849253.1| - 1.3e-07 31.8 0.8 1.3e-07 31.8 0.8 2.2 2 0 0 2 2 2 1 MutS domain V HHH_5 PF14520.6 gi|304314106|ref|YP_003849253.1| - 9.8e-07 29.3 3.2 5e-06 27.0 3.2 2.3 1 1 0 1 1 1 1 Helix-hairpin-helix domain AAA_14 PF13173.6 gi|304314106|ref|YP_003849253.1| - 7.1e-05 22.9 0.1 0.00026 21.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|304314106|ref|YP_003849253.1| - 0.00036 20.8 0.0 0.0011 19.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain Ribosomal_S13 PF00416.22 gi|304314106|ref|YP_003849253.1| - 0.01 16.3 4.2 0.02 15.3 0.3 3.2 2 2 1 4 4 4 1 Ribosomal protein S13/S18 AAA_21 PF13304.6 gi|304314106|ref|YP_003849253.1| - 0.02 14.7 3.4 0.043 13.6 0.0 2.7 3 0 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|304314106|ref|YP_003849253.1| - 0.026 14.9 2.4 0.05 14.0 0.4 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|304314106|ref|YP_003849253.1| - 0.029 14.1 0.0 0.062 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain HHH_8 PF14716.6 gi|304314106|ref|YP_003849253.1| - 0.034 14.5 0.8 0.44 10.9 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF1890 PF09001.11 gi|304314106|ref|YP_003849253.1| - 0.045 14.2 0.1 0.14 12.5 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1890) CPT PF07931.12 gi|304314106|ref|YP_003849253.1| - 0.046 13.6 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein 5_3_exonuc PF01367.20 gi|304314106|ref|YP_003849253.1| - 0.074 13.7 0.9 1.2 9.8 0.2 3.1 2 1 1 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold AAA_23 PF13476.6 gi|304314106|ref|YP_003849253.1| - 0.085 13.4 0.0 0.085 13.4 0.0 3.1 3 2 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|304314106|ref|YP_003849253.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF29 PF01724.16 gi|304314106|ref|YP_003849253.1| - 0.12 12.6 0.0 0.75 10.0 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function DUF29 ABC_tran PF00005.27 gi|304314106|ref|YP_003849253.1| - 0.13 12.8 0.1 0.77 10.3 0.0 2.3 3 0 0 3 3 2 0 ABC transporter AAA_16 PF13191.6 gi|304314106|ref|YP_003849253.1| - 0.3 11.4 1.2 1.3 9.3 0.0 2.5 3 2 0 3 3 3 0 AAA ATPase domain DUF2018 PF09442.10 gi|304314106|ref|YP_003849253.1| - 3.5 8.7 10.9 11 7.1 0.0 4.1 4 0 0 4 4 3 0 Domain of unknown function (DUF2018) Peptidase_U32 PF01136.19 gi|304314107|ref|YP_003849254.1| - 2.2e-93 311.7 0.0 2.8e-81 272.1 0.0 3.3 3 1 0 3 3 3 2 Peptidase family U32 DUF3656 PF12392.8 gi|304314107|ref|YP_003849254.1| - 4.7e-15 56.1 0.0 8.8e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 Collagenase GAF_2 PF13185.6 gi|304314108|ref|YP_003849255.1| - 1.6e-24 86.7 0.0 3.4e-23 82.5 0.0 2.4 2 1 0 2 2 2 1 GAF domain Response_reg PF00072.24 gi|304314108|ref|YP_003849255.1| - 9e-24 83.8 0.4 1.6e-23 83.0 0.4 1.5 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.26 gi|304314108|ref|YP_003849255.1| - 2.3e-11 44.5 0.0 2e-10 41.4 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.10 gi|304314108|ref|YP_003849255.1| - 1.6e-09 38.0 0.0 5.5e-09 36.2 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|304314108|ref|YP_003849255.1| - 2.3e-08 34.2 0.0 5.6e-08 33.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|304314108|ref|YP_003849255.1| - 3.2e-07 30.4 0.0 6.7e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.6 gi|304314108|ref|YP_003849255.1| - 1.7e-06 28.4 0.0 2.2e-05 24.8 0.0 2.6 3 0 0 3 3 3 1 GAF domain PAS_10 PF13596.6 gi|304314108|ref|YP_003849255.1| - 0.025 15.2 0.0 0.11 13.1 0.0 2.1 2 0 0 2 2 2 0 PAS domain dCache_3 PF14827.6 gi|304314108|ref|YP_003849255.1| - 0.099 12.3 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Double sensory domain of two-component sensor kinase Thymidylate_kin PF02223.17 gi|304314109|ref|YP_003849256.1| - 6.9e-49 166.0 0.0 7.8e-49 165.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|304314109|ref|YP_003849256.1| - 0.025 14.8 0.0 0.039 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|304314109|ref|YP_003849256.1| - 0.034 14.2 0.0 0.39 10.8 0.0 2.0 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|304314109|ref|YP_003849256.1| - 0.08 12.9 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|304314109|ref|YP_003849256.1| - 0.094 12.9 0.0 0.13 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|304314109|ref|YP_003849256.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B dNK PF01712.19 gi|304314109|ref|YP_003849256.1| - 0.12 12.2 0.0 5.2 6.9 0.0 2.5 1 1 0 1 1 1 0 Deoxynucleoside kinase AAA_18 PF13238.6 gi|304314109|ref|YP_003849256.1| - 0.13 12.8 0.0 0.28 11.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|304314109|ref|YP_003849256.1| - 0.21 10.7 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase SRP54 PF00448.22 gi|304314109|ref|YP_003849256.1| - 0.23 11.1 0.0 0.37 10.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Prefoldin_3 PF13758.6 gi|304314110|ref|YP_003849257.1| - 0.0031 17.5 0.1 0.0036 17.3 0.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit RuvB_N PF05496.12 gi|304314110|ref|YP_003849257.1| - 0.072 12.8 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Matrilin_ccoil PF10393.9 gi|304314110|ref|YP_003849257.1| - 0.11 12.4 0.3 0.16 11.8 0.3 1.2 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin tRNA-synt_1b PF00579.25 gi|304314111|ref|YP_003849258.1| - 2.8e-50 171.3 0.0 3.2e-50 171.1 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|304314111|ref|YP_003849258.1| - 4.5e-06 25.8 0.0 0.03 13.2 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (K) DALR_1 PF05746.15 gi|304314111|ref|YP_003849258.1| - 0.15 12.2 0.0 0.27 11.4 0.0 1.3 1 0 0 1 1 1 0 DALR anticodon binding domain Mersacidin PF16934.5 gi|304314111|ref|YP_003849258.1| - 0.2 11.5 0.0 16 5.3 0.0 2.3 2 0 0 2 2 2 0 Two-component Enterococcus faecalis cytolysin (EFC) NMD3 PF04981.13 gi|304314112|ref|YP_003849259.1| - 2.4e-53 181.1 0.0 3e-53 180.8 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DUF4428 PF14471.6 gi|304314112|ref|YP_003849259.1| - 0.028 14.3 0.7 15 5.6 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4428) DUF3964 PF13107.6 gi|304314112|ref|YP_003849259.1| - 0.078 13.4 0.1 4 7.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3964) zf-TFIIB PF13453.6 gi|304314112|ref|YP_003849259.1| - 0.17 11.2 1.3 2 7.8 0.5 2.8 2 0 0 2 2 2 0 Transcription factor zinc-finger DZR PF12773.7 gi|304314112|ref|YP_003849259.1| - 0.18 11.8 4.5 8.7 6.5 2.0 2.8 2 1 0 2 2 2 0 Double zinc ribbon zf-C4pol PF14260.6 gi|304314112|ref|YP_003849259.1| - 0.67 10.5 3.2 35 5.0 0.0 2.9 2 1 1 3 3 3 0 C4-type zinc-finger of DNA polymerase delta zinc_ribbon_2 PF13240.6 gi|304314112|ref|YP_003849259.1| - 0.72 9.7 4.3 21 5.0 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|304314112|ref|YP_003849259.1| - 6 6.6 7.7 14 5.5 0.6 3.2 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 eIF-5_eIF-2B PF01873.17 gi|304314113|ref|YP_003849260.1| - 1.1e-37 128.5 0.0 1.3e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Radical_SAM_C PF16199.5 gi|304314113|ref|YP_003849260.1| - 0.073 13.1 0.0 1.2 9.2 0.0 2.1 2 0 0 2 2 2 0 Radical_SAM C-terminal domain Vps36-NZF-N PF16988.5 gi|304314113|ref|YP_003849260.1| - 0.13 11.7 0.4 0.2 11.0 0.4 1.3 1 0 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-RanBP PF00641.18 gi|304314113|ref|YP_003849260.1| - 0.38 10.1 0.1 0.38 10.1 0.1 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others MCM PF00493.23 gi|304314114|ref|YP_003849261.1| - 4.3e-102 340.0 0.0 6.4e-102 339.4 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|304314114|ref|YP_003849261.1| - 3.8e-34 117.2 0.1 6.6e-34 116.5 0.1 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|304314114|ref|YP_003849261.1| - 9.6e-30 102.9 1.8 9.6e-30 102.9 1.8 2.3 2 0 0 2 2 2 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|304314114|ref|YP_003849261.1| - 2.8e-07 30.2 0.0 0.00041 19.8 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM_N PF14551.6 gi|304314114|ref|YP_003849261.1| - 3.8e-07 30.7 0.2 3.8e-07 30.7 0.2 3.0 4 0 0 4 4 3 1 MCM N-terminal domain AAA_5 PF07728.14 gi|304314114|ref|YP_003849261.1| - 0.00073 19.5 0.0 0.003 17.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|304314114|ref|YP_003849261.1| - 0.0036 17.2 0.0 0.036 13.9 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|304314114|ref|YP_003849261.1| - 0.0039 17.6 1.1 0.027 14.9 1.2 2.6 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|304314114|ref|YP_003849261.1| - 0.011 15.4 0.0 3.5 7.3 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain tRNA_anti-codon PF01336.25 gi|304314114|ref|YP_003849261.1| - 0.013 15.4 0.4 0.036 14.1 0.0 1.9 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain AAA_18 PF13238.6 gi|304314114|ref|YP_003849261.1| - 0.02 15.4 0.2 0.87 10.1 0.0 2.8 1 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|304314114|ref|YP_003849261.1| - 0.041 14.2 1.3 0.56 10.5 0.0 3.1 2 2 1 4 4 4 0 AAA domain Zn-ribbon_8 PF09723.10 gi|304314114|ref|YP_003849261.1| - 0.058 13.5 0.4 0.058 13.5 0.4 2.3 2 0 0 2 2 2 0 Zinc ribbon domain AAA PF00004.29 gi|304314114|ref|YP_003849261.1| - 0.063 13.7 0.0 0.25 11.8 0.0 2.1 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HypA PF01155.19 gi|304314114|ref|YP_003849261.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Vps51 PF08700.11 gi|304314114|ref|YP_003849261.1| - 0.12 12.5 0.0 0.54 10.4 0.0 2.1 1 0 0 1 1 1 0 Vps51/Vps67 CCDC144C PF14915.6 gi|304314115|ref|YP_003849262.1| - 0.0069 15.5 2.9 0.0088 15.2 2.9 1.0 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region JAKMIP_CC3 PF16034.5 gi|304314115|ref|YP_003849262.1| - 0.017 15.1 1.0 0.019 14.9 1.0 1.1 1 0 0 1 1 1 0 JAKMIP CC3 domain SPATA1_C PF15743.5 gi|304314115|ref|YP_003849262.1| - 0.021 14.9 1.2 0.027 14.6 1.2 1.1 1 0 0 1 1 1 0 Spermatogenesis-associated C-terminus HALZ PF02183.18 gi|304314115|ref|YP_003849262.1| - 0.029 14.6 3.3 0.17 12.2 3.3 2.3 1 1 0 1 1 1 0 Homeobox associated leucine zipper Bap31_Bap29_C PF18035.1 gi|304314115|ref|YP_003849262.1| - 0.11 12.5 5.1 0.2 11.7 3.8 2.0 1 1 1 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain FtsJ PF01728.19 gi|304314116|ref|YP_003849263.1| - 4.7e-55 186.4 0.0 5.4e-55 186.2 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|304314116|ref|YP_003849263.1| - 3.6e-06 26.8 0.0 3.5e-05 23.6 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|304314116|ref|YP_003849263.1| - 0.012 15.5 0.0 0.027 14.3 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|304314116|ref|YP_003849263.1| - 0.033 13.8 0.0 0.054 13.1 0.0 1.5 1 1 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_25 PF13649.6 gi|304314116|ref|YP_003849263.1| - 0.046 14.4 0.1 0.37 11.5 0.1 2.4 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|304314116|ref|YP_003849263.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Metallophos_2 PF12850.7 gi|304314117|ref|YP_003849264.1| - 9.3e-34 117.0 0.0 1.1e-33 116.8 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|304314117|ref|YP_003849264.1| - 0.00044 20.8 0.5 0.39 11.2 0.1 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase DUF5518 PF17647.1 gi|304314118|ref|YP_003849265.1| - 2.9e-14 53.2 41.4 3.4e-14 53.0 41.4 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DPRP PF04244.13 gi|304314119|ref|YP_003849266.1| - 1.2e-44 152.9 0.0 1.6e-44 152.4 0.0 1.2 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.14 gi|304314119|ref|YP_003849266.1| - 4.8e-06 26.2 0.6 8.2e-06 25.4 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase Ion_trans_2 PF07885.16 gi|304314121|ref|YP_003849268.1| - 1.4e-05 25.0 7.4 1.4e-05 25.0 7.4 2.1 3 0 0 3 3 3 1 Ion channel Ion_trans PF00520.31 gi|304314121|ref|YP_003849268.1| - 3.4e-05 23.2 16.6 7.4e-05 22.1 16.6 1.5 1 1 0 1 1 1 1 Ion transport protein BRI3BP PF14965.6 gi|304314121|ref|YP_003849268.1| - 9.6e-05 22.0 0.1 0.00064 19.3 0.0 2.1 2 0 0 2 2 2 1 Negative regulator of p53/TP53 Lig_chan PF00060.26 gi|304314121|ref|YP_003849268.1| - 0.0029 17.5 0.3 0.0065 16.3 0.1 1.7 1 1 0 1 1 1 1 Ligand-gated ion channel LapA_dom PF06305.11 gi|304314121|ref|YP_003849268.1| - 0.94 9.3 0.0 0.94 9.3 0.0 2.9 3 1 0 3 3 3 0 Lipopolysaccharide assembly protein A domain Yip1 PF04893.17 gi|304314122|ref|YP_003849269.1| - 3.8e-12 46.2 29.5 4.8e-12 45.9 29.5 1.1 1 0 0 1 1 1 1 Yip1 domain ApoL PF05461.11 gi|304314122|ref|YP_003849269.1| - 0.13 11.6 1.5 0.18 11.1 1.5 1.2 1 0 0 1 1 1 0 Apolipoprotein L DUF2154 PF09922.9 gi|304314123|ref|YP_003849270.1| - 0.0011 18.8 0.1 0.069 13.0 0.0 2.2 1 1 1 2 2 2 2 Cell wall-active antibiotics response 4TMS YvqF Toast_rack_N PF17115.5 gi|304314123|ref|YP_003849270.1| - 0.028 14.7 0.0 1.5 9.1 0.0 2.3 2 0 0 2 2 2 0 N-terminal domain of toast_rack, DUF2154 Radical_SAM PF04055.21 gi|304314124|ref|YP_003849271.1| - 1.6e-27 97.0 0.3 3.3e-26 92.7 0.1 2.4 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|304314124|ref|YP_003849271.1| - 4.7e-25 88.0 0.6 1.4e-23 83.2 0.1 2.8 2 1 1 3 3 3 1 B12 binding domain Radical_SAM PF04055.21 gi|304314125|ref|YP_003849272.1| - 1.3e-22 81.0 0.1 2.8e-22 79.9 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|304314125|ref|YP_003849272.1| - 1.8e-09 38.0 0.2 1.8e-09 38.0 0.2 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|304314125|ref|YP_003849272.1| - 8.5e-09 35.8 0.0 1.7e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|304314125|ref|YP_003849272.1| - 1.2e-06 28.7 0.0 2.4e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TM2 PF05154.16 gi|304314125|ref|YP_003849272.1| - 0.26 11.7 2.4 0.46 10.8 0.5 2.2 2 0 0 2 2 2 0 TM2 domain TetR_N PF00440.23 gi|304314126|ref|YP_003849273.1| - 1.5e-17 63.1 0.2 1.5e-17 63.1 0.2 2.5 3 0 0 3 3 3 1 Bacterial regulatory proteins, tetR family LacI PF00356.21 gi|304314126|ref|YP_003849273.1| - 0.00066 19.4 0.6 0.029 14.2 0.1 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Sigma70_r4_2 PF08281.12 gi|304314126|ref|YP_003849273.1| - 0.0013 18.3 0.2 0.0041 16.8 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 TetR_C_24 PF17932.1 gi|304314126|ref|YP_003849273.1| - 0.0026 18.0 0.0 0.0046 17.2 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|304314126|ref|YP_003849273.1| - 0.0076 16.3 0.0 0.022 14.8 0.0 1.8 1 1 1 2 2 2 1 AefR-like transcriptional repressor, C-terminal domain Sigma70_r4 PF04545.16 gi|304314126|ref|YP_003849273.1| - 0.043 13.4 0.3 0.043 13.4 0.3 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Tnp_1_2 PF13022.6 gi|304314126|ref|YP_003849273.1| - 0.049 13.8 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HAD_2 PF13419.6 gi|304314126|ref|YP_003849273.1| - 0.097 12.7 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF1456 PF07308.13 gi|304314127|ref|YP_003849274.1| - 0.096 13.0 0.2 0.27 11.6 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1456) GDP_Man_Dehyd PF16363.5 gi|304314128|ref|YP_003849275.1| - 8.3e-99 331.1 0.0 9.6e-99 330.9 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|304314128|ref|YP_003849275.1| - 1.5e-73 247.3 0.0 1.8e-73 247.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|304314128|ref|YP_003849275.1| - 1.8e-19 69.8 0.0 2.5e-19 69.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|304314128|ref|YP_003849275.1| - 4.8e-18 65.3 0.0 1.7e-17 63.5 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|304314128|ref|YP_003849275.1| - 5.1e-18 65.2 0.0 6.1e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|304314128|ref|YP_003849275.1| - 4.1e-15 55.7 0.0 2.5e-11 43.3 0.0 2.7 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|304314128|ref|YP_003849275.1| - 1.2e-09 38.3 0.0 1.9e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|304314128|ref|YP_003849275.1| - 0.0012 18.5 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|304314128|ref|YP_003849275.1| - 0.02 15.2 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|304314128|ref|YP_003849275.1| - 0.082 12.8 0.0 0.34 10.8 0.0 1.9 2 0 0 2 2 2 0 KR domain dTDP_sugar_isom PF00908.17 gi|304314129|ref|YP_003849276.1| - 4e-71 238.1 0.0 4.5e-71 238.0 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase NTP_transferase PF00483.23 gi|304314130|ref|YP_003849277.1| - 4.9e-69 232.7 0.0 5.9e-69 232.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|304314130|ref|YP_003849277.1| - 1e-11 45.4 0.0 1.3e-11 45.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|304314130|ref|YP_003849277.1| - 0.099 12.5 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase RmlD_sub_bind PF04321.17 gi|304314131|ref|YP_003849278.1| - 4.7e-103 344.2 0.0 5.3e-103 344.1 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|304314131|ref|YP_003849278.1| - 7.6e-24 84.5 0.0 1e-23 84.0 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|304314131|ref|YP_003849278.1| - 4.1e-15 55.7 0.4 1.7e-12 47.1 0.0 2.8 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|304314131|ref|YP_003849278.1| - 1.1e-12 48.0 0.1 3.3e-11 43.2 0.0 2.2 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|304314131|ref|YP_003849278.1| - 2.3e-12 46.5 0.2 3.5e-10 39.3 0.0 2.4 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|304314131|ref|YP_003849278.1| - 4.4e-12 45.7 0.2 1.4e-09 37.5 0.0 2.4 1 1 1 2 2 2 2 Male sterility protein Semialdhyde_dh PF01118.24 gi|304314131|ref|YP_003849278.1| - 0.035 14.5 0.0 0.071 13.6 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|304314131|ref|YP_003849278.1| - 0.073 13.2 0.1 0.15 12.2 0.0 1.6 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus HAD_2 PF13419.6 gi|304314132|ref|YP_003849279.1| - 1.1e-20 74.5 0.0 1.4e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|304314132|ref|YP_003849279.1| - 9.1e-10 38.5 0.1 1.7e-09 37.6 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|304314132|ref|YP_003849279.1| - 3.9e-09 37.2 0.1 6.8e-09 36.4 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|304314132|ref|YP_003849279.1| - 1.1e-07 32.3 0.0 3.2e-06 27.6 0.0 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_5 PF01022.20 gi|304314134|ref|YP_003849281.1| - 3.4e-18 65.2 0.4 7.3e-18 64.2 0.4 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|304314134|ref|YP_003849281.1| - 5.3e-13 48.8 0.2 8.9e-13 48.1 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|304314134|ref|YP_003849281.1| - 0.00041 20.5 0.0 0.00056 20.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|304314134|ref|YP_003849281.1| - 0.00092 19.1 0.1 0.0018 18.1 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|304314134|ref|YP_003849281.1| - 0.0011 18.9 0.1 0.0016 18.4 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_ECF PF07638.11 gi|304314134|ref|YP_003849281.1| - 0.0035 17.2 0.0 0.0041 17.0 0.0 1.2 1 0 0 1 1 1 1 ECF sigma factor HTH_27 PF13463.6 gi|304314134|ref|YP_003849281.1| - 0.012 16.1 0.1 0.021 15.3 0.1 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|304314134|ref|YP_003849281.1| - 0.014 14.9 0.5 0.051 13.1 0.5 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HxlR PF01638.17 gi|304314134|ref|YP_003849281.1| - 0.021 14.7 0.0 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_1 PF00126.27 gi|304314134|ref|YP_003849281.1| - 0.026 14.4 0.4 0.062 13.3 0.4 1.6 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.19 gi|304314134|ref|YP_003849281.1| - 0.033 14.4 0.0 0.046 13.9 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|304314134|ref|YP_003849281.1| - 0.034 14.1 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 MarR family PaaX PF07848.12 gi|304314134|ref|YP_003849281.1| - 0.15 12.3 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein Cyclase PF04199.13 gi|304314135|ref|YP_003849282.1| - 1.1e-18 67.7 0.0 1.8e-18 67.1 0.0 1.3 1 0 0 1 1 1 1 Putative cyclase TrmO PF01980.16 gi|304314136|ref|YP_003849283.1| - 2.2e-31 108.5 0.0 2.6e-31 108.3 0.0 1.0 1 0 0 1 1 1 1 tRNA-methyltransferase O Flavodoxin_5 PF12724.7 gi|304314137|ref|YP_003849284.1| - 6.9e-07 29.6 0.0 0.023 15.0 0.1 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|304314137|ref|YP_003849284.1| - 1.5e-06 28.0 0.0 0.016 14.9 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|304314137|ref|YP_003849284.1| - 0.0013 19.0 0.0 0.02 15.1 0.0 2.2 2 0 0 2 2 2 1 Flavodoxin Flavodoxin_4 PF12682.7 gi|304314137|ref|YP_003849284.1| - 0.0038 16.9 0.0 0.035 13.8 0.0 2.0 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.15 gi|304314137|ref|YP_003849284.1| - 0.035 13.8 0.0 0.056 13.2 0.0 1.4 1 1 0 1 1 1 0 NADPH-dependent FMN reductase TraG-D_C PF12696.7 gi|304314137|ref|YP_003849284.1| - 0.17 11.8 0.0 0.28 11.2 0.0 1.3 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG Methyltransf_11 PF08241.12 gi|304314138|ref|YP_003849285.1| - 2.1e-05 25.1 0.1 0.00023 21.7 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|304314138|ref|YP_003849285.1| - 0.00018 22.1 0.1 0.0016 19.1 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain DEAD_assoc PF08494.11 gi|304314139|ref|YP_003849286.1| - 1.7e-57 194.3 0.1 2.3e-57 193.9 0.1 1.2 1 0 0 1 1 1 1 DEAD/H associated Ubiq_cyt_C_chap PF03981.12 gi|304314139|ref|YP_003849286.1| - 0.016 15.3 0.2 0.08 13.0 0.1 2.2 2 0 0 2 2 2 0 Ubiquinol-cytochrome C chaperone DEAD PF00270.29 gi|304314140|ref|YP_003849287.1| - 1.3e-29 103.3 0.0 3.1e-29 102.0 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|304314140|ref|YP_003849287.1| - 1.8e-16 60.5 0.1 6.1e-16 58.7 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|304314140|ref|YP_003849287.1| - 3e-10 40.4 0.0 1.4e-09 38.2 0.0 2.0 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|304314140|ref|YP_003849287.1| - 0.0031 16.6 0.0 0.034 13.2 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF1424 PF07232.11 gi|304314140|ref|YP_003849287.1| - 0.025 13.6 0.0 0.042 12.8 0.0 1.3 1 0 0 1 1 1 0 Putative rep protein (DUF1424) TIP49 PF06068.13 gi|304314140|ref|YP_003849287.1| - 0.04 13.1 0.0 0.075 12.2 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain SNF2_N PF00176.23 gi|304314140|ref|YP_003849287.1| - 0.082 11.6 0.0 0.22 10.2 0.0 1.8 1 1 0 1 1 1 0 SNF2 family N-terminal domain Metallophos PF00149.28 gi|304314141|ref|YP_003849288.1| - 4.1e-07 30.7 0.3 1.4e-06 29.0 0.3 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|304314141|ref|YP_003849288.1| - 0.0017 18.6 0.1 0.0025 18.0 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain UbiA PF01040.18 gi|304314142|ref|YP_003849289.1| - 8.2e-27 94.1 11.9 1.2e-26 93.5 11.9 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family HEAT_2 PF13646.6 gi|304314143|ref|YP_003849290.1| - 1.6e-37 127.8 0.3 6e-17 61.8 0.1 3.0 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.16 gi|304314143|ref|YP_003849290.1| - 1.7e-19 68.5 0.0 4.6e-06 26.8 0.0 4.8 5 0 0 5 5 5 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|304314143|ref|YP_003849290.1| - 2e-15 55.5 0.0 0.00018 21.5 0.0 4.3 4 0 0 4 4 4 3 HEAT repeat DUF5397 PF17375.2 gi|304314143|ref|YP_003849290.1| - 0.0053 16.5 0.0 0.2 11.4 0.0 2.5 2 0 0 2 2 2 1 Family of unknown function (DUF5397) HEAT_EZ PF13513.6 gi|304314143|ref|YP_003849290.1| - 0.022 15.3 0.1 11 6.7 0.0 3.7 3 1 1 4 4 4 0 HEAT-like repeat Cnd1 PF12717.7 gi|304314143|ref|YP_003849290.1| - 0.022 14.8 0.0 7.2 6.6 0.0 3.1 1 1 2 3 3 3 0 non-SMC mitotic condensation complex subunit 1 API5 PF05918.11 gi|304314143|ref|YP_003849290.1| - 0.023 13.5 0.0 15 4.3 0.0 2.9 2 1 1 3 3 3 0 Apoptosis inhibitory protein 5 (API5) Arm PF00514.23 gi|304314143|ref|YP_003849290.1| - 0.18 11.9 0.0 39 4.5 0.0 3.2 3 1 1 4 4 4 0 Armadillo/beta-catenin-like repeat Amino_oxidase PF01593.24 gi|304314144|ref|YP_003849291.1| - 9.3e-40 137.3 0.0 1.1e-39 137.1 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|304314144|ref|YP_003849291.1| - 7.3e-16 58.2 0.1 1.6e-15 57.1 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|304314144|ref|YP_003849291.1| - 3.5e-14 53.2 0.3 7.4e-13 48.8 0.3 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|304314144|ref|YP_003849291.1| - 1.6e-08 34.1 1.6 1.9e-07 30.6 1.5 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|304314144|ref|YP_003849291.1| - 2.2e-07 31.3 2.9 0.00041 20.8 0.8 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|304314144|ref|YP_003849291.1| - 2.6e-06 26.9 6.4 3.5e-05 23.2 2.1 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|304314144|ref|YP_003849291.1| - 2.7e-06 27.0 0.0 1.1e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|304314144|ref|YP_003849291.1| - 1.2e-05 24.2 0.1 0.00015 20.6 0.0 2.3 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|304314144|ref|YP_003849291.1| - 6.5e-05 22.3 2.6 0.00011 21.6 2.6 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|304314144|ref|YP_003849291.1| - 7.6e-05 22.1 4.3 8.7e-05 21.9 1.8 2.0 2 0 0 2 2 2 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|304314144|ref|YP_003849291.1| - 0.00056 19.5 0.3 0.0043 16.7 0.2 2.3 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.22 gi|304314144|ref|YP_003849291.1| - 0.0062 15.7 1.9 0.035 13.2 1.7 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|304314144|ref|YP_003849291.1| - 0.025 13.8 3.3 0.41 9.9 1.9 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|304314144|ref|YP_003849291.1| - 0.028 13.3 0.9 0.041 12.7 0.9 1.2 1 0 0 1 1 1 0 Tryptophan halogenase TrkA_N PF02254.18 gi|304314144|ref|YP_003849291.1| - 0.03 14.6 1.1 0.14 12.4 0.1 2.2 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|304314144|ref|YP_003849291.1| - 0.053 13.5 4.9 0.084 12.9 1.2 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|304314144|ref|YP_003849291.1| - 0.064 12.6 1.3 0.1 11.8 1.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|304314144|ref|YP_003849291.1| - 0.14 12.0 1.1 0.28 11.0 1.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|304314144|ref|YP_003849291.1| - 0.24 11.0 1.5 1.1 9.0 0.5 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|304314144|ref|YP_003849291.1| - 0.33 9.9 1.3 0.45 9.5 0.5 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein SQS_PSY PF00494.19 gi|304314145|ref|YP_003849292.1| - 2.5e-50 171.4 0.1 2.9e-50 171.2 0.1 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase UbiA PF01040.18 gi|304314146|ref|YP_003849293.1| - 2.7e-29 102.2 9.4 4e-29 101.7 9.4 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family Chromate_transp PF02417.15 gi|304314146|ref|YP_003849293.1| - 0.0012 19.0 2.0 0.046 13.9 0.0 2.7 1 1 0 2 2 2 1 Chromate transporter Caroten_synth PF04240.12 gi|304314147|ref|YP_003849294.1| - 2.7e-48 164.6 17.3 3.6e-48 164.2 17.3 1.1 1 0 0 1 1 1 1 Carotenoid biosynthesis protein CN_hydrolase PF00795.22 gi|304314148|ref|YP_003849295.1| - 2.8e-58 197.3 0.0 3.2e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase G8 PF10162.9 gi|304314148|ref|YP_003849295.1| - 0.14 12.2 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 G8 domain Mntp PF02659.15 gi|304314149|ref|YP_003849296.1| - 6.7e-48 162.3 12.3 6.7e-48 162.3 12.3 1.8 1 1 1 2 2 2 1 Putative manganese efflux pump Trypsin_2 PF13365.6 gi|304314150|ref|YP_003849297.1| - 2.4e-30 106.4 2.2 3.8e-30 105.8 2.2 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|304314150|ref|YP_003849297.1| - 1e-10 41.9 0.2 2e-10 40.8 0.2 1.5 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|304314150|ref|YP_003849297.1| - 5.4e-09 36.3 0.1 1.1e-08 35.2 0.1 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|304314150|ref|YP_003849297.1| - 3.2e-07 30.1 0.1 7e-07 29.0 0.1 1.6 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|304314150|ref|YP_003849297.1| - 0.00034 20.9 0.2 0.00083 19.7 0.2 1.7 1 0 0 1 1 1 1 PDZ domain Tricorn_PDZ PF14685.6 gi|304314150|ref|YP_003849297.1| - 0.00067 19.6 0.0 0.0016 18.4 0.0 1.7 1 0 0 1 1 1 1 Tricorn protease PDZ domain Peptidase_S32 PF05579.13 gi|304314150|ref|YP_003849297.1| - 0.068 12.4 1.8 2.9 7.0 0.1 2.2 1 1 1 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Mnd1 PF03962.15 gi|304314150|ref|YP_003849297.1| - 0.17 12.2 0.0 0.41 11.0 0.0 1.6 1 0 0 1 1 1 0 Mnd1 HTH domain Peptidase_S46 PF10459.9 gi|304314150|ref|YP_003849297.1| - 1.2 7.6 3.3 9.9 4.7 0.3 2.1 2 0 0 2 2 2 0 Peptidase S46 AAA_5 PF07728.14 gi|304314151|ref|YP_003849298.1| - 1.2e-18 67.4 0.0 3.1e-18 66.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|304314151|ref|YP_003849298.1| - 3.2e-13 49.7 0.0 3.9e-11 42.9 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|304314151|ref|YP_003849298.1| - 8.5e-13 48.9 0.2 5.3e-12 46.3 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|304314151|ref|YP_003849298.1| - 2.7e-08 34.4 0.2 1.6e-07 31.9 0.2 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_2 PF07724.14 gi|304314151|ref|YP_003849298.1| - 1.2e-07 32.0 0.0 2.5e-07 31.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|304314151|ref|YP_003849298.1| - 2.4e-06 27.9 0.0 9.4e-06 25.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|304314151|ref|YP_003849298.1| - 0.00017 21.5 0.7 0.0049 16.8 0.4 2.7 1 1 1 2 2 2 1 NACHT domain AAA_18 PF13238.6 gi|304314151|ref|YP_003849298.1| - 0.00021 21.8 0.0 0.00053 20.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|304314151|ref|YP_003849298.1| - 0.00026 20.7 0.1 0.27 10.9 0.0 2.6 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|304314151|ref|YP_003849298.1| - 0.00028 21.2 0.2 0.14 12.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_6 PF12774.7 gi|304314151|ref|YP_003849298.1| - 0.00036 19.6 0.0 0.00059 18.9 0.0 1.2 1 0 0 1 1 1 1 Hydrolytic ATP binding site of dynein motor region Sigma54_activat PF00158.26 gi|304314151|ref|YP_003849298.1| - 0.0004 20.1 0.1 0.23 11.2 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|304314151|ref|YP_003849298.1| - 0.00047 19.6 0.0 0.005 16.2 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|304314151|ref|YP_003849298.1| - 0.00057 20.1 0.0 0.003 17.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|304314151|ref|YP_003849298.1| - 0.0012 18.9 0.1 0.013 15.5 0.0 2.4 1 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|304314151|ref|YP_003849298.1| - 0.0023 17.7 0.1 0.019 14.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|304314151|ref|YP_003849298.1| - 0.0032 16.7 0.0 0.036 13.3 0.0 2.1 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_7 PF12775.7 gi|304314151|ref|YP_003849298.1| - 0.0084 15.6 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|304314151|ref|YP_003849298.1| - 0.0089 15.9 0.0 0.14 12.0 0.0 2.3 2 0 0 2 2 2 1 NTPase MCM PF00493.23 gi|304314151|ref|YP_003849298.1| - 0.017 14.2 0.0 0.11 11.6 0.0 2.0 2 0 0 2 2 2 0 MCM P-loop domain TsaE PF02367.17 gi|304314151|ref|YP_003849298.1| - 0.024 14.6 0.0 0.046 13.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|304314151|ref|YP_003849298.1| - 0.025 14.3 0.0 0.045 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|304314151|ref|YP_003849298.1| - 0.055 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|304314151|ref|YP_003849298.1| - 0.06 12.6 0.0 0.089 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|304314151|ref|YP_003849298.1| - 0.11 12.2 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|304314151|ref|YP_003849298.1| - 0.12 11.6 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|304314151|ref|YP_003849298.1| - 0.17 11.6 0.0 0.43 10.3 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|304314151|ref|YP_003849298.1| - 0.19 12.2 0.0 0.34 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase VWA_CoxE PF05762.14 gi|304314152|ref|YP_003849299.1| - 1.3e-67 227.4 0.3 1.8e-67 227.0 0.3 1.1 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein NucS PF01939.16 gi|304314154|ref|YP_003849301.1| - 1.4e-104 348.5 0.0 1.7e-104 348.2 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS PDDEXK_9 PF08011.11 gi|304314154|ref|YP_003849301.1| - 0.0071 16.2 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UPF0102 PF02021.17 gi|304314154|ref|YP_003849301.1| - 0.012 15.8 0.0 0.029 14.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 CheF-arch PF04283.12 gi|304314154|ref|YP_003849301.1| - 0.014 15.1 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Chemotaxis signal transduction system protein F from archaea HSDR_N PF04313.14 gi|304314154|ref|YP_003849301.1| - 0.036 14.0 0.0 0.05 13.5 0.0 1.2 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Peptidase_M48 PF01435.18 gi|304314155|ref|YP_003849302.1| - 1.5e-19 70.6 0.0 3.9e-19 69.2 0.0 1.7 1 1 0 1 1 1 1 Peptidase family M48 Fer4_15 PF13459.6 gi|304314157|ref|YP_003849304.1| - 3.4e-14 53.3 6.5 4.1e-14 53.0 6.5 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|304314157|ref|YP_003849304.1| - 9.2e-11 42.1 7.0 1.2e-10 41.7 7.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|304314157|ref|YP_003849304.1| - 2.4e-05 24.2 1.1 2.4e-05 24.2 1.1 2.9 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304314157|ref|YP_003849304.1| - 3.4e-05 23.7 1.6 3.4e-05 23.7 1.6 2.4 3 1 0 3 3 2 1 4Fe-4S binding domain Fer4 PF00037.27 gi|304314157|ref|YP_003849304.1| - 3.7e-05 23.3 2.5 3.7e-05 23.3 2.5 2.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304314157|ref|YP_003849304.1| - 0.0011 19.5 0.9 0.0011 19.5 0.9 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314157|ref|YP_003849304.1| - 0.0042 17.2 8.8 0.0086 16.2 8.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314157|ref|YP_003849304.1| - 0.015 15.5 2.8 0.015 15.5 2.8 2.0 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|304314157|ref|YP_003849304.1| - 0.029 15.2 0.6 0.029 15.2 0.6 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|304314157|ref|YP_003849304.1| - 0.046 13.8 3.7 0.09 12.9 3.7 1.7 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_21 PF14697.6 gi|304314157|ref|YP_003849304.1| - 0.22 11.7 13.5 0.92 9.7 13.5 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304314157|ref|YP_003849304.1| - 0.27 11.7 9.1 1 9.9 9.1 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314157|ref|YP_003849304.1| - 1.3 10.0 10.4 17 6.5 11.3 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Abhydrolase_1 PF00561.20 gi|304314158|ref|YP_003849305.1| - 3.3e-21 76.1 0.0 8.8e-21 74.7 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|304314158|ref|YP_003849305.1| - 1.9e-07 32.0 0.0 2.4e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.20 gi|304314158|ref|YP_003849305.1| - 7.5e-05 22.5 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 Putative esterase DUF915 PF06028.11 gi|304314158|ref|YP_003849305.1| - 0.0012 18.2 0.0 0.084 12.2 0.0 2.1 2 0 0 2 2 2 2 Alpha/beta hydrolase of unknown function (DUF915) Hydrolase_4 PF12146.8 gi|304314158|ref|YP_003849305.1| - 0.005 16.1 0.0 0.0069 15.7 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 HIT PF01230.23 gi|304314161|ref|YP_003849308.1| - 0.0011 19.7 0.0 0.0016 19.2 0.0 1.2 1 0 0 1 1 1 1 HIT domain Ferritin PF00210.24 gi|304314162|ref|YP_003849309.1| - 3.1e-12 46.6 1.3 3.6e-12 46.4 1.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|304314162|ref|YP_003849309.1| - 1.4e-09 38.5 1.2 3e-09 37.4 1.2 1.5 1 1 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|304314162|ref|YP_003849309.1| - 1.1e-07 31.8 0.1 0.0012 18.7 0.0 2.1 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 Mn_catalase PF05067.12 gi|304314162|ref|YP_003849309.1| - 7.8e-05 21.8 0.8 0.0095 14.9 0.1 2.0 2 0 0 2 2 2 2 Manganese containing catalase Ferritin-like PF12902.7 gi|304314162|ref|YP_003849309.1| - 0.00055 19.9 0.0 0.0013 18.6 0.0 1.6 1 1 0 1 1 1 1 Ferritin-like DUF2383 PF09537.10 gi|304314162|ref|YP_003849309.1| - 0.0025 18.1 0.2 0.02 15.3 0.5 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) FA_desaturase_2 PF03405.14 gi|304314162|ref|YP_003849309.1| - 0.019 13.8 0.2 1 8.1 0.0 2.1 2 0 0 2 2 2 0 Fatty acid desaturase TraB PF01963.17 gi|304314162|ref|YP_003849309.1| - 0.024 14.5 0.1 0.026 14.5 0.1 1.1 1 0 0 1 1 1 0 TraB family Ferritin_2 PF13668.6 gi|304314162|ref|YP_003849309.1| - 0.047 13.9 0.0 11 6.2 0.0 2.0 1 1 0 2 2 2 0 Ferritin-like domain DUF362 PF04015.12 gi|304314163|ref|YP_003849310.1| - 2.6e-42 145.4 0.1 3.1e-42 145.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|304314163|ref|YP_003849310.1| - 3e-10 39.5 14.1 2.6e-05 23.9 4.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304314163|ref|YP_003849310.1| - 1.5e-07 31.9 22.4 4.1e-06 27.3 13.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314163|ref|YP_003849310.1| - 2.9e-07 30.6 24.4 1.1e-06 28.8 11.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314163|ref|YP_003849310.1| - 5.2e-07 30.5 7.0 0.0027 18.6 3.7 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|304314163|ref|YP_003849310.1| - 1.6e-06 28.3 7.7 3.1e-06 27.4 7.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304314163|ref|YP_003849310.1| - 8.7e-06 25.6 15.1 0.0031 17.5 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|304314163|ref|YP_003849310.1| - 2.4e-05 24.5 13.1 0.012 16.1 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304314163|ref|YP_003849310.1| - 2.5e-05 24.1 14.2 0.003 17.5 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304314163|ref|YP_003849310.1| - 2.9e-05 24.1 23.4 9.5e-05 22.4 13.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304314163|ref|YP_003849310.1| - 3.6e-05 24.1 8.2 0.077 13.5 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314163|ref|YP_003849310.1| - 0.00023 21.2 13.5 0.057 13.5 5.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304314163|ref|YP_003849310.1| - 0.0012 19.3 10.9 0.012 16.2 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|304314163|ref|YP_003849310.1| - 0.0051 17.3 16.5 0.29 11.7 2.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|304314163|ref|YP_003849310.1| - 0.017 15.9 7.7 0.095 13.5 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|304314163|ref|YP_003849310.1| - 0.037 15.0 17.0 0.15 13.1 4.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Lar_N PF09861.9 gi|304314163|ref|YP_003849310.1| - 0.2 10.8 1.3 0.39 9.9 1.3 1.4 1 0 0 1 1 1 0 Lactate racemase N-terminal domain NadA PF02445.16 gi|304314164|ref|YP_003849311.1| - 1.2e-108 362.8 0.9 1.4e-108 362.6 0.9 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Asparaginase PF00710.20 gi|304314164|ref|YP_003849311.1| - 0.13 11.8 0.0 0.32 10.5 0.0 1.7 1 0 0 1 1 1 0 Asparaginase, N-terminal Sortase PF04203.13 gi|304314166|ref|YP_003849313.1| - 3.1e-14 52.9 0.0 4.1e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Sortase domain MS_channel PF00924.18 gi|304314167|ref|YP_003849314.1| - 1.8e-57 194.2 0.7 2.9e-57 193.5 0.7 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel Lactamase_B_2 PF12706.7 gi|304314168|ref|YP_003849315.1| - 9.2e-20 71.0 0.0 9.4e-09 35.1 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|304314168|ref|YP_003849315.1| - 3.4e-12 46.8 0.8 6e-12 46.0 0.1 1.8 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|304314168|ref|YP_003849315.1| - 5.6e-08 32.3 0.0 1e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 tRNase Z endonuclease QRPTase_C PF01729.19 gi|304314169|ref|YP_003849316.1| - 2.5e-63 212.8 0.5 3.3e-63 212.4 0.5 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|304314169|ref|YP_003849316.1| - 4.4e-23 81.1 0.5 9.6e-23 80.1 0.5 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.19 gi|304314169|ref|YP_003849316.1| - 0.051 13.0 0.2 0.15 11.4 0.1 1.7 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.17 gi|304314169|ref|YP_003849316.1| - 0.051 12.9 0.1 0.1 11.9 0.1 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase CBFD_NFYB_HMF PF00808.23 gi|304314170|ref|YP_003849317.1| - 0.00036 20.8 0.2 0.0015 18.7 0.1 2.1 2 0 0 2 2 2 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone TUG-UBL1 PF11470.8 gi|304314170|ref|YP_003849317.1| - 0.02 15.1 0.0 0.031 14.5 0.0 1.3 1 0 0 1 1 1 0 TUG ubiquitin-like domain MCC-bdg_PDZ PF10506.9 gi|304314170|ref|YP_003849317.1| - 0.039 14.0 0.0 0.085 12.9 0.0 1.6 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF2312 PF10073.9 gi|304314170|ref|YP_003849317.1| - 0.05 13.3 0.7 0.05 13.3 0.7 2.1 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) zf-C4H2 PF10146.9 gi|304314170|ref|YP_003849317.1| - 0.51 10.6 4.5 0.15 12.3 0.6 1.8 1 1 0 1 1 1 0 Zinc finger-containing protein zf-ZPR1 PF03367.13 gi|304314171|ref|YP_003849318.1| - 4.9e-39 133.8 0.3 5.8e-39 133.5 0.3 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|304314171|ref|YP_003849318.1| - 0.083 13.3 1.6 0.17 12.3 1.6 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zn-ribbon_14 PF16503.5 gi|304314171|ref|YP_003849318.1| - 0.34 10.5 2.2 0.83 9.2 2.2 1.6 1 0 0 1 1 1 0 Zinc-ribbon 3H PF02829.14 gi|304314172|ref|YP_003849319.1| - 8.1e-23 80.6 0.1 2.7e-22 78.9 0.0 2.0 3 0 0 3 3 2 1 3H domain AAA_18 PF13238.6 gi|304314172|ref|YP_003849319.1| - 7.2e-08 33.1 2.5 2.9e-07 31.1 0.1 2.4 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|304314172|ref|YP_003849319.1| - 5e-05 23.7 0.1 0.00035 21.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|304314172|ref|YP_003849319.1| - 0.0014 18.7 0.0 0.046 13.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|304314172|ref|YP_003849319.1| - 0.0031 16.8 0.1 0.027 13.8 0.0 2.4 1 1 0 3 3 3 1 Zeta toxin AAA_16 PF13191.6 gi|304314172|ref|YP_003849319.1| - 0.017 15.5 0.0 0.066 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|304314172|ref|YP_003849319.1| - 0.02 15.1 0.1 0.088 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_26 PF13500.6 gi|304314172|ref|YP_003849319.1| - 0.034 14.0 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain MarR_2 PF12802.7 gi|304314172|ref|YP_003849319.1| - 0.057 13.3 0.0 0.69 9.8 0.0 2.3 2 0 0 2 2 2 0 MarR family Cytidylate_kin PF02224.18 gi|304314172|ref|YP_003849319.1| - 0.07 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase RNA_helicase PF00910.22 gi|304314172|ref|YP_003849319.1| - 0.08 13.3 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MarR PF01047.22 gi|304314172|ref|YP_003849319.1| - 0.081 12.9 0.0 0.3 11.1 0.0 2.0 2 0 0 2 2 2 0 MarR family AAA_22 PF13401.6 gi|304314172|ref|YP_003849319.1| - 0.098 12.9 0.0 0.66 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain SKI PF01202.22 gi|304314172|ref|YP_003849319.1| - 0.099 12.8 0.0 0.5 10.5 0.0 2.1 2 0 0 2 2 2 0 Shikimate kinase APS_kinase PF01583.20 gi|304314172|ref|YP_003849319.1| - 0.12 12.2 0.0 0.44 10.4 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase Robl_LC7 PF03259.17 gi|304314173|ref|YP_003849320.1| - 2e-19 69.1 0.2 2.5e-19 68.8 0.2 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain DUF1611 PF07755.11 gi|304314174|ref|YP_003849321.1| - 2.6e-61 206.4 0.0 3.9e-61 205.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|304314174|ref|YP_003849321.1| - 7.8e-15 54.9 0.0 2.1e-14 53.5 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_N) Rossmann-like domain CoA_binding PF02629.19 gi|304314174|ref|YP_003849321.1| - 0.075 13.7 0.0 0.54 11.0 0.0 2.3 2 0 0 2 2 2 0 CoA binding domain SepF PF04472.12 gi|304314175|ref|YP_003849322.1| - 4.7e-07 30.0 0.2 7.2e-07 29.4 0.2 1.3 1 0 0 1 1 1 1 Cell division protein SepF Peptidase_C3 PF00548.20 gi|304314175|ref|YP_003849322.1| - 0.13 12.2 0.1 0.17 11.8 0.1 1.1 1 0 0 1 1 1 0 3C cysteine protease (picornain 3C) DUF2226 PF09987.9 gi|304314176|ref|YP_003849323.1| - 6.5e-12 45.4 18.7 1e-11 44.8 18.7 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2226) DUF4388 PF14332.6 gi|304314176|ref|YP_003849323.1| - 0.00044 20.4 0.0 0.00082 19.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4388) ParA PF10609.9 gi|304314177|ref|YP_003849324.1| - 5.7e-26 91.5 6.3 5.1e-25 88.3 6.3 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|304314177|ref|YP_003849324.1| - 7.9e-26 90.6 0.4 1.2e-25 90.0 0.4 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|304314177|ref|YP_003849324.1| - 2.1e-20 73.4 0.1 3.5e-20 72.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|304314177|ref|YP_003849324.1| - 1.5e-13 50.8 0.0 1.9e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|304314177|ref|YP_003849324.1| - 9.5e-13 48.2 1.2 5.3e-12 45.8 1.2 1.8 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|304314177|ref|YP_003849324.1| - 6.8e-09 35.3 2.7 5.7e-08 32.3 0.6 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|304314177|ref|YP_003849324.1| - 8.5e-08 31.8 3.0 5.6e-07 29.1 3.0 2.0 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|304314177|ref|YP_003849324.1| - 1.3e-07 31.6 8.3 2.8e-06 27.3 8.3 2.4 1 1 0 1 1 1 1 AAA domain VirC1 PF07015.11 gi|304314177|ref|YP_003849324.1| - 0.0015 17.9 2.1 0.0019 17.5 0.2 1.9 2 0 0 2 2 2 1 VirC1 protein AAA_30 PF13604.6 gi|304314177|ref|YP_003849324.1| - 0.002 17.9 0.4 0.0029 17.4 0.4 1.3 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|304314177|ref|YP_003849324.1| - 0.017 15.0 0.2 0.028 14.3 0.2 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase CLP1_P PF16575.5 gi|304314177|ref|YP_003849324.1| - 0.04 13.7 0.1 0.076 12.8 0.1 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|304314177|ref|YP_003849324.1| - 0.045 12.7 2.5 0.07 12.1 2.5 1.5 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|304314177|ref|YP_003849324.1| - 0.075 12.6 1.3 0.11 12.1 1.1 1.5 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|304314177|ref|YP_003849324.1| - 0.1 12.2 0.9 0.2 11.3 0.3 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|304314177|ref|YP_003849324.1| - 0.11 12.2 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain PfkB PF00294.24 gi|304314178|ref|YP_003849325.1| - 9e-53 179.5 0.0 1.2e-52 179.1 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|304314178|ref|YP_003849325.1| - 0.019 14.4 0.0 0.026 13.9 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase Maf_N PF08383.11 gi|304314179|ref|YP_003849326.1| - 0.047 13.5 0.6 0.12 12.2 0.1 1.9 2 0 0 2 2 2 0 Maf N-terminal region TatD_DNase PF01026.21 gi|304314180|ref|YP_003849327.1| - 5.3e-17 62.0 0.0 5.9e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase DUF1724 PF08350.10 gi|304314181|ref|YP_003849328.1| - 1.1e-20 73.4 0.1 2.6e-20 72.3 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|304314181|ref|YP_003849328.1| - 0.018 14.9 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|304314181|ref|YP_003849328.1| - 0.019 15.0 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain STAS PF01740.21 gi|304314181|ref|YP_003849328.1| - 0.032 13.9 0.0 0.092 12.4 0.0 1.8 1 1 1 2 2 2 0 STAS domain HTH_34 PF13601.6 gi|304314181|ref|YP_003849328.1| - 0.085 13.0 0.1 0.16 12.2 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1724 PF08350.10 gi|304314182|ref|YP_003849329.1| - 2.5e-10 40.4 0.3 1.2e-09 38.2 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HxlR PF01638.17 gi|304314182|ref|YP_003849329.1| - 0.0002 21.1 0.1 0.00043 20.1 0.1 1.6 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|304314182|ref|YP_003849329.1| - 0.00074 19.4 0.2 0.0023 17.8 0.2 1.8 1 1 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|304314182|ref|YP_003849329.1| - 0.0052 16.6 0.2 0.0098 15.7 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|304314182|ref|YP_003849329.1| - 0.0057 17.1 0.2 0.012 16.0 0.2 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|304314182|ref|YP_003849329.1| - 0.015 15.2 0.2 0.032 14.2 0.2 1.5 1 0 0 1 1 1 0 MarR family HGTP_anticodon PF03129.20 gi|304314183|ref|YP_003849330.1| - 5.4e-23 81.0 1.7 9.4e-23 80.2 0.1 2.2 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|304314183|ref|YP_003849330.1| - 1.7e-08 34.6 0.1 4.7e-08 33.2 0.1 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|304314183|ref|YP_003849330.1| - 0.04 13.0 0.1 6.2 5.8 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) Zn-ribbon_8 PF09723.10 gi|304314183|ref|YP_003849330.1| - 0.13 12.4 0.2 2.1 8.6 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|304314183|ref|YP_003849330.1| - 0.14 11.9 1.3 0.4 10.4 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DCD PF06559.11 gi|304314184|ref|YP_003849331.1| - 5.2e-20 71.6 0.0 4.7e-10 38.8 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|304314184|ref|YP_003849331.1| - 5.1e-14 52.1 0.0 7.3e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase DUF1512 PF07431.12 gi|304314185|ref|YP_003849332.1| - 9e-80 268.3 3.4 1.1e-79 268.1 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) DUF1512 PF07431.12 gi|304314186|ref|YP_003849333.1| - 2.3e-11 43.3 0.0 2.4e-11 43.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) SpoU_methylase PF00588.19 gi|304314187|ref|YP_003849334.1| - 3.7e-33 114.7 0.0 4.9e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family CCG PF02754.16 gi|304314188|ref|YP_003849335.1| - 3.6e-40 136.0 5.7 1.9e-21 76.0 0.1 2.9 3 0 0 3 3 2 2 Cysteine-rich domain Fer2_3 PF13085.6 gi|304314188|ref|YP_003849335.1| - 6.4e-26 90.5 0.1 6.4e-26 90.5 0.1 2.4 3 0 0 3 3 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|304314188|ref|YP_003849335.1| - 2.6e-11 43.8 6.3 2.6e-11 43.8 6.3 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314188|ref|YP_003849335.1| - 1e-06 29.2 7.0 1e-06 29.2 7.0 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|304314188|ref|YP_003849335.1| - 1.7e-06 27.9 0.2 1.7e-06 27.9 0.2 3.0 3 0 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.6 gi|304314188|ref|YP_003849335.1| - 0.00022 21.4 5.1 0.32 11.2 0.5 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314188|ref|YP_003849335.1| - 0.0021 18.2 23.2 0.0075 16.4 2.0 3.5 4 1 0 4 4 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314188|ref|YP_003849335.1| - 0.0024 18.0 20.9 0.003 17.7 13.6 3.9 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314188|ref|YP_003849335.1| - 0.0026 18.3 11.7 0.0026 18.3 11.7 3.4 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer2_4 PF13510.6 gi|304314188|ref|YP_003849335.1| - 0.0031 17.5 0.2 0.009 16.0 0.2 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_16 PF13484.6 gi|304314188|ref|YP_003849335.1| - 0.028 15.4 3.4 0.028 15.4 3.4 3.7 5 0 0 5 5 4 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|304314188|ref|YP_003849335.1| - 1.7 9.3 10.9 9.2 6.9 0.3 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|304314188|ref|YP_003849335.1| - 7.5 7.5 15.9 1.6 9.6 1.3 3.8 5 0 0 5 5 4 0 4Fe-4S dicluster domain TPP_enzyme_C PF02775.21 gi|304314189|ref|YP_003849336.1| - 5.4e-26 91.2 0.0 1.1e-25 90.3 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|304314189|ref|YP_003849336.1| - 1.2e-14 54.7 0.2 2e-14 53.9 0.2 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4_6 PF12837.7 gi|304314189|ref|YP_003849336.1| - 3.3e-05 23.8 18.6 0.0024 17.8 2.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain PFOR_II PF17147.4 gi|304314189|ref|YP_003849336.1| - 3.7e-05 24.0 0.0 0.00019 21.7 0.0 2.2 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|304314189|ref|YP_003849336.1| - 7.6e-05 22.4 1.4 0.0016 18.1 0.2 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_10 PF13237.6 gi|304314189|ref|YP_003849336.1| - 0.00023 21.2 9.3 0.0039 17.3 9.7 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|304314189|ref|YP_003849336.1| - 0.00032 20.4 3.0 0.00032 20.4 3.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304314189|ref|YP_003849336.1| - 0.00087 19.2 15.7 0.007 16.4 1.7 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304314189|ref|YP_003849336.1| - 0.015 15.4 8.5 0.031 14.4 8.5 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314189|ref|YP_003849336.1| - 0.019 15.6 0.8 0.019 15.6 0.8 2.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314189|ref|YP_003849336.1| - 0.021 15.8 2.8 0.021 15.8 2.8 2.4 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain Transketolase_C PF02780.20 gi|304314189|ref|YP_003849336.1| - 0.073 12.9 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain Fer4_9 PF13187.6 gi|304314189|ref|YP_003849336.1| - 0.31 11.2 13.6 0.035 14.3 8.5 2.1 2 1 0 2 2 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|304314189|ref|YP_003849336.1| - 0.65 10.8 10.8 1.4 9.7 2.2 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain POR PF01558.18 gi|304314190|ref|YP_003849337.1| - 1.5e-41 142.4 0.1 1.7e-41 142.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase ACT PF01842.25 gi|304314191|ref|YP_003849338.1| - 2.5e-15 56.0 1.0 8.6e-08 31.8 0.2 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|304314191|ref|YP_003849338.1| - 3.2e-07 30.8 0.5 0.0031 18.0 0.1 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|304314191|ref|YP_003849338.1| - 0.00024 20.9 0.0 1.5 8.7 0.0 3.2 2 1 1 3 3 3 2 ACT domain Glyoxalase_4 PF13669.6 gi|304314191|ref|YP_003849338.1| - 0.027 14.7 0.0 0.23 11.7 0.0 2.3 1 1 1 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DraK_HK_N PF18092.1 gi|304314191|ref|YP_003849338.1| - 0.099 13.1 0.8 0.83 10.1 0.1 2.0 2 0 0 2 2 2 0 DraK Histidine Kinase N-terminal domain TxDE PF18711.1 gi|304314191|ref|YP_003849338.1| - 0.12 12.5 0.2 1.7 8.8 0.0 2.5 3 0 0 3 3 3 0 Toxoflavin-degrading enzyme AMP-binding_C_2 PF14535.6 gi|304314192|ref|YP_003849339.1| - 2.5e-33 114.3 0.3 1.5e-32 111.8 0.3 2.3 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|304314192|ref|YP_003849339.1| - 2e-14 53.0 0.6 4.7e-14 51.8 0.6 1.6 1 1 0 1 1 1 1 AMP-binding enzyme Glyoxalase_3 PF13468.6 gi|304314192|ref|YP_003849339.1| - 0.13 12.3 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Glyoxalase-like domain SSF PF00474.17 gi|304314193|ref|YP_003849340.1| - 1.1e-56 192.5 41.6 1.5e-56 192.1 41.6 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family FixP_N PF14715.6 gi|304314194|ref|YP_003849341.1| - 0.11 12.3 2.3 0.15 11.9 2.3 1.2 1 0 0 1 1 1 0 N-terminal domain of cytochrome oxidase-cbb3, FixP CcmD PF04995.14 gi|304314194|ref|YP_003849341.1| - 0.23 11.6 2.2 0.32 11.1 2.2 1.3 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) ABC2_membrane_3 PF12698.7 gi|304314195|ref|YP_003849342.1| - 4e-32 111.7 14.7 8.7e-17 61.2 8.6 2.2 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|304314195|ref|YP_003849342.1| - 1.6e-08 34.2 14.4 1.6e-08 34.2 14.4 2.0 2 1 0 2 2 2 1 ABC-2 type transporter DUF1664 PF07889.12 gi|304314195|ref|YP_003849342.1| - 0.021 14.8 1.3 5.1 7.1 0.2 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|304314195|ref|YP_003849342.1| - 0.021 13.7 2.7 0.7 8.7 0.6 2.2 1 1 1 2 2 2 0 Spc7 kinetochore protein FliJ PF02050.16 gi|304314195|ref|YP_003849342.1| - 0.029 14.6 0.5 6 7.1 0.0 3.0 3 1 1 4 4 3 0 Flagellar FliJ protein DUF3584 PF12128.8 gi|304314195|ref|YP_003849342.1| - 0.036 11.6 0.3 0.057 11.0 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF3216 PF11505.8 gi|304314195|ref|YP_003849342.1| - 0.073 13.3 0.2 0.41 10.9 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3216) CCDC74_C PF14917.6 gi|304314195|ref|YP_003849342.1| - 0.13 12.8 0.2 0.31 11.6 0.2 1.6 1 0 0 1 1 1 0 Coiled coil protein 74, C terminal APG6_N PF17675.1 gi|304314195|ref|YP_003849342.1| - 0.15 12.5 0.2 0.15 12.5 0.2 1.9 2 0 0 2 2 2 0 Apg6 coiled-coil region Vps51 PF08700.11 gi|304314195|ref|YP_003849342.1| - 0.24 11.5 6.0 21 5.3 0.1 4.1 4 0 0 4 4 4 0 Vps51/Vps67 DUF4795 PF16043.5 gi|304314195|ref|YP_003849342.1| - 0.28 10.7 3.9 0.5 9.9 3.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) Laminin_II PF06009.12 gi|304314195|ref|YP_003849342.1| - 0.38 10.8 5.2 9.1 6.3 0.9 2.7 1 1 1 2 2 2 0 Laminin Domain II RasGAP_C PF03836.15 gi|304314195|ref|YP_003849342.1| - 0.4 10.8 2.6 1.3 9.1 0.3 2.5 1 1 1 2 2 2 0 RasGAP C-terminus TPR_MLP1_2 PF07926.12 gi|304314195|ref|YP_003849342.1| - 0.4 10.7 3.4 7.3 6.7 0.1 2.6 3 0 0 3 3 2 0 TPR/MLP1/MLP2-like protein FapA PF03961.13 gi|304314195|ref|YP_003849342.1| - 0.76 8.3 6.9 0.5 8.9 0.9 2.1 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF724 PF05266.14 gi|304314195|ref|YP_003849342.1| - 0.8 9.5 2.7 24 4.7 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Syntaxin_2 PF14523.6 gi|304314195|ref|YP_003849342.1| - 0.86 10.0 3.3 5.3 7.5 0.5 2.5 2 0 0 2 2 2 0 Syntaxin-like protein PRC PF05239.16 gi|304314196|ref|YP_003849343.1| - 2e-13 50.2 4.6 2.2e-13 50.1 4.6 1.0 1 0 0 1 1 1 1 PRC-barrel domain Pribosyltran PF00156.27 gi|304314197|ref|YP_003849344.1| - 2.4e-14 53.1 1.0 3.4e-14 52.7 1.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain RBD PF02196.15 gi|304314197|ref|YP_003849344.1| - 0.06 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Raf-like Ras-binding domain MoCF_biosynth PF00994.24 gi|304314198|ref|YP_003849345.1| - 1.6e-32 112.1 0.0 1.9e-32 111.9 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain PIN_6 PF17146.4 gi|304314200|ref|YP_003849347.1| - 1.2e-15 57.7 0.1 2.6e-15 56.7 0.0 1.5 2 0 0 2 2 2 1 PIN domain of ribonuclease DUF2117 PF09890.9 gi|304314201|ref|YP_003849348.1| - 7.7e-78 260.8 0.4 9.9e-78 260.4 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.21 gi|304314201|ref|YP_003849348.1| - 0.00043 19.6 0.0 0.00078 18.7 0.0 1.4 1 0 0 1 1 1 1 ATP-NAD kinase AIRS PF00586.24 gi|304314202|ref|YP_003849349.1| - 6.9e-17 61.9 0.2 1.2e-16 61.1 0.2 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|304314202|ref|YP_003849349.1| - 1.5e-15 57.7 0.0 2.1e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Pro_isomerase PF00160.21 gi|304314203|ref|YP_003849350.1| - 0.003 17.8 0.3 21 5.3 0.0 4.3 4 1 1 5 5 5 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF871 PF05913.11 gi|304314203|ref|YP_003849350.1| - 0.044 13.0 0.0 0.083 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF871) Myosin_N PF02736.19 gi|304314203|ref|YP_003849350.1| - 0.045 13.6 0.0 0.31 10.9 0.0 2.5 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain Cyclophil_like PF04126.13 gi|304314203|ref|YP_003849350.1| - 0.075 12.9 0.0 1.2 8.9 0.0 2.6 2 0 0 2 2 2 0 Cyclophilin-like PASTA PF03793.19 gi|304314203|ref|YP_003849350.1| - 0.12 12.3 0.0 0.82 9.6 0.0 2.3 2 0 0 2 2 2 0 PASTA domain DUF2102 PF09875.9 gi|304314204|ref|YP_003849351.1| - 1.3e-40 137.2 0.0 1.7e-40 136.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF2111 PF09884.9 gi|304314205|ref|YP_003849352.1| - 5.5e-36 122.5 0.3 6.9e-36 122.2 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) DUF2112 PF09885.9 gi|304314206|ref|YP_003849353.1| - 7.2e-66 220.6 0.0 8e-66 220.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) Imm3 PF14425.6 gi|304314206|ref|YP_003849353.1| - 0.17 11.9 0.1 0.27 11.3 0.1 1.3 1 0 0 1 1 1 0 Immunity protein Imm3 BcrAD_BadFG PF01869.20 gi|304314207|ref|YP_003849354.1| - 2.9e-61 207.3 4.8 4.1e-61 206.8 4.8 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|304314207|ref|YP_003849354.1| - 3.9e-05 24.0 1.5 0.38 11.2 0.1 2.7 2 0 0 2 2 2 2 Cell division protein FtsA MutL PF13941.6 gi|304314207|ref|YP_003849354.1| - 0.0021 16.8 7.1 0.012 14.3 0.5 2.9 3 0 0 3 3 3 2 MutL protein DUF460 PF04312.13 gi|304314207|ref|YP_003849354.1| - 0.022 14.4 0.0 3.2 7.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF460) CGGC PF08821.11 gi|304314207|ref|YP_003849354.1| - 0.033 14.4 0.0 0.067 13.4 0.0 1.5 1 0 0 1 1 1 0 CGGC domain Hydantoinase_A PF01968.18 gi|304314207|ref|YP_003849354.1| - 0.1 11.8 6.4 2.2 7.4 0.2 2.8 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|304314207|ref|YP_003849354.1| - 0.29 10.8 3.9 0.13 11.9 0.8 2.0 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region DUF2113 PF09886.9 gi|304314208|ref|YP_003849355.1| - 6.4e-60 201.7 0.5 7.6e-60 201.4 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) DUF4162 PF13732.6 gi|304314208|ref|YP_003849355.1| - 0.15 12.8 0.0 0.43 11.3 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4162) Radical_SAM PF04055.21 gi|304314209|ref|YP_003849356.1| - 3.2e-28 99.2 0.1 4.9e-28 98.6 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|304314209|ref|YP_003849356.1| - 0.013 15.6 0.0 0.028 14.6 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|304314209|ref|YP_003849356.1| - 0.018 15.3 0.0 0.043 14.1 0.0 1.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Peptidase_C93 PF06035.11 gi|304314209|ref|YP_003849356.1| - 0.035 13.9 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP IF-2B PF01008.17 gi|304314210|ref|YP_003849357.1| - 8.6e-80 268.0 0.0 1.5e-79 267.2 0.0 1.4 1 1 0 1 1 1 1 Initiation factor 2 subunit family Met_10 PF02475.16 gi|304314211|ref|YP_003849358.1| - 3.6e-74 248.8 0.1 4.7e-74 248.4 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|304314211|ref|YP_003849358.1| - 5.9e-17 61.3 1.6 1.9e-16 59.6 1.6 1.9 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain TRM PF02005.16 gi|304314211|ref|YP_003849358.1| - 1.4e-12 47.5 0.1 2.1e-12 46.9 0.1 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|304314211|ref|YP_003849358.1| - 1.1e-10 41.4 0.1 1.7e-10 40.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|304314211|ref|YP_003849358.1| - 6.4e-08 32.3 0.0 9.9e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|304314211|ref|YP_003849358.1| - 1.8e-07 30.9 0.0 2.9e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|304314211|ref|YP_003849358.1| - 2.2e-07 31.5 0.1 3.9e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|304314211|ref|YP_003849358.1| - 1.2e-05 25.2 0.0 2.2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|304314211|ref|YP_003849358.1| - 0.00012 22.0 0.0 0.00025 21.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|304314211|ref|YP_003849358.1| - 0.00014 21.6 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|304314211|ref|YP_003849358.1| - 0.00024 21.7 0.0 0.00058 20.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltrans_SAM PF10672.9 gi|304314211|ref|YP_003849358.1| - 0.00052 19.3 0.0 0.00073 18.8 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Ubie_methyltran PF01209.18 gi|304314211|ref|YP_003849358.1| - 0.0018 17.7 0.0 0.0042 16.5 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|304314211|ref|YP_003849358.1| - 0.0067 16.1 0.0 0.013 15.1 0.0 1.5 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F UPF0020 PF01170.18 gi|304314211|ref|YP_003849358.1| - 0.0099 15.6 0.1 0.036 13.7 0.1 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|304314211|ref|YP_003849358.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 DNA methylase MethyltransfD12 PF02086.15 gi|304314211|ref|YP_003849358.1| - 0.14 11.8 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase FtsJ PF01728.19 gi|304314211|ref|YP_003849358.1| - 0.16 12.1 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase TP_methylase PF00590.20 gi|304314212|ref|YP_003849359.1| - 3e-23 82.9 0.1 4e-23 82.5 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Fibin PF15819.5 gi|304314213|ref|YP_003849360.1| - 0.004 17.0 0.0 0.0051 16.6 0.0 1.2 1 0 0 1 1 1 1 Fin bud initiation factor homologue FucT_N PF18025.1 gi|304314213|ref|YP_003849360.1| - 0.048 14.1 0.0 0.055 13.9 0.0 1.2 1 0 0 1 1 1 0 Alpha-(1,3)-fucosyltransferase FucT N-terminal domain Methyltransf_11 PF08241.12 gi|304314214|ref|YP_003849361.1| - 1.8e-14 54.1 0.0 2.6e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|304314214|ref|YP_003849361.1| - 4.7e-14 52.9 0.0 6.7e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|304314214|ref|YP_003849361.1| - 8.2e-12 45.2 0.0 1e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|304314214|ref|YP_003849361.1| - 5.7e-08 32.4 0.0 7.7e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|304314214|ref|YP_003849361.1| - 1.3e-05 24.8 0.0 2.1e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.17 gi|304314214|ref|YP_003849361.1| - 1.4e-05 24.3 0.0 1.8e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_12 PF08242.12 gi|304314214|ref|YP_003849361.1| - 2.4e-05 25.0 0.0 3.7e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|304314214|ref|YP_003849361.1| - 7.6e-05 22.5 0.0 0.00017 21.4 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|304314214|ref|YP_003849361.1| - 0.00024 21.0 0.0 0.00079 19.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|304314214|ref|YP_003849361.1| - 0.0038 16.7 0.0 0.0062 16.0 0.0 1.3 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|304314214|ref|YP_003849361.1| - 0.006 15.9 0.0 0.0096 15.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|304314214|ref|YP_003849361.1| - 0.011 15.0 0.1 0.015 14.6 0.1 1.2 1 0 0 1 1 1 0 O-methyltransferase domain PASTA PF03793.19 gi|304314214|ref|YP_003849361.1| - 0.015 15.2 0.0 3.7 7.5 0.0 2.6 3 0 0 3 3 3 0 PASTA domain NodS PF05401.11 gi|304314214|ref|YP_003849361.1| - 0.041 13.5 0.0 0.048 13.3 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_3 PF01596.17 gi|304314214|ref|YP_003849361.1| - 0.061 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase FtsJ PF01728.19 gi|304314214|ref|YP_003849361.1| - 0.077 13.1 0.0 0.11 12.7 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase Met_10 PF02475.16 gi|304314214|ref|YP_003849361.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|304314214|ref|YP_003849361.1| - 0.2 11.6 0.0 0.37 10.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TGT PF01702.18 gi|304314215|ref|YP_003849362.1| - 6.4e-08 32.1 0.1 5.3e-05 22.5 0.0 2.1 1 1 1 2 2 2 2 Queuine tRNA-ribosyltransferase Fer4_8 PF13183.6 gi|304314216|ref|YP_003849363.1| - 5e-11 42.9 6.5 8.9e-11 42.1 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314216|ref|YP_003849363.1| - 2.1e-10 41.0 7.7 3.3e-10 40.4 7.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314216|ref|YP_003849363.1| - 3.9e-09 36.5 8.1 6.4e-09 35.8 8.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314216|ref|YP_003849363.1| - 1.1e-08 35.1 7.5 2.1e-08 34.2 7.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314216|ref|YP_003849363.1| - 5.4e-06 26.9 10.0 1.8e-05 25.2 10.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304314216|ref|YP_003849363.1| - 0.00059 20.1 12.2 0.0017 18.7 3.1 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.27 gi|304314216|ref|YP_003849363.1| - 0.004 16.9 11.4 0.1 12.5 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304314216|ref|YP_003849363.1| - 0.022 14.8 13.1 0.33 11.1 3.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304314216|ref|YP_003849363.1| - 0.046 14.7 13.4 0.81 10.7 13.7 2.2 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|304314216|ref|YP_003849363.1| - 0.075 12.8 5.9 0.73 9.6 0.9 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|304314216|ref|YP_003849363.1| - 0.24 11.6 6.9 3.4 7.9 1.3 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314216|ref|YP_003849363.1| - 0.31 11.2 9.8 1.4 9.1 9.8 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304314216|ref|YP_003849363.1| - 0.35 11.9 17.3 1.1 10.4 4.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain CCG PF02754.16 gi|304314217|ref|YP_003849364.1| - 1.3e-44 150.3 1.8 1.6e-22 79.5 0.1 2.6 3 0 0 3 3 3 2 Cysteine-rich domain Peptidase_C1_2 PF03051.15 gi|304314217|ref|YP_003849364.1| - 0.069 11.9 0.0 0.093 11.5 0.0 1.2 1 0 0 1 1 1 0 Peptidase C1-like family DUF749 PF05370.11 gi|304314218|ref|YP_003849365.1| - 1.6e-37 127.5 0.3 1.8e-37 127.3 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF749) DUF3213 PF11491.8 gi|304314218|ref|YP_003849365.1| - 0.015 15.4 0.1 0.018 15.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3213) DUF705 PF05152.12 gi|304314218|ref|YP_003849365.1| - 0.039 13.4 0.1 0.042 13.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF705) SpoIISA_toxin PF14171.6 gi|304314218|ref|YP_003849365.1| - 0.079 12.6 0.0 0.088 12.5 0.0 1.1 1 0 0 1 1 1 0 Toxin SpoIISA, type II toxin-antitoxin system DUF2096 PF09869.9 gi|304314219|ref|YP_003849366.1| - 1.3e-69 233.6 0.3 1.4e-69 233.5 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2096) GAT PF03127.14 gi|304314219|ref|YP_003849366.1| - 0.016 15.5 0.5 0.046 14.0 0.5 1.8 1 1 0 1 1 1 0 GAT domain PriA_3primeBD PF17764.1 gi|304314219|ref|YP_003849366.1| - 0.12 12.3 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 3′ DNA-binding domain (3′BD) Metallophos_2 PF12850.7 gi|304314220|ref|YP_003849367.1| - 1.7e-20 73.9 0.3 2.7e-20 73.2 0.3 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|304314220|ref|YP_003849367.1| - 1.8e-19 71.1 0.8 3.6e-19 70.1 0.8 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|304314220|ref|YP_003849367.1| - 1e-17 64.3 0.1 1.1e-12 47.9 0.0 2.7 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily ATP-cone PF03477.16 gi|304314221|ref|YP_003849368.1| - 5.4e-14 52.5 1.4 1.5e-12 47.9 0.1 3.4 4 0 0 4 4 4 1 ATP cone domain AAA_18 PF13238.6 gi|304314221|ref|YP_003849368.1| - 1.4e-06 28.8 0.0 4.1e-06 27.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|304314221|ref|YP_003849368.1| - 0.00091 18.6 0.1 0.079 12.2 0.0 2.8 2 1 0 3 3 3 1 Zeta toxin Cytidylate_kin PF02224.18 gi|304314221|ref|YP_003849368.1| - 0.026 14.3 0.0 0.07 12.9 0.0 1.9 2 1 0 2 2 2 0 Cytidylate kinase Cytidylate_kin2 PF13189.6 gi|304314221|ref|YP_003849368.1| - 0.027 14.6 0.1 0.056 13.6 0.1 1.5 1 0 0 1 1 1 0 Cytidylate kinase-like family RsgA_GTPase PF03193.16 gi|304314221|ref|YP_003849368.1| - 0.044 13.7 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase CBS PF00571.28 gi|304314222|ref|YP_003849369.1| - 8.9e-29 99.7 6.5 4.7e-14 52.6 0.6 2.1 2 0 0 2 2 2 2 CBS domain PHO4 PF01384.20 gi|304314223|ref|YP_003849370.1| - 4.6e-70 236.3 28.3 1.3e-69 234.8 28.3 1.6 1 1 0 1 1 1 1 Phosphate transporter family Cation_efflux PF01545.21 gi|304314224|ref|YP_003849371.1| - 9.4e-43 146.3 5.5 1.1e-42 146.0 5.5 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|304314224|ref|YP_003849371.1| - 3.1e-21 75.3 1.2 6e-21 74.4 1.2 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter BON PF04972.17 gi|304314224|ref|YP_003849371.1| - 0.017 15.4 0.1 0.099 13.0 0.0 2.2 2 1 1 3 3 3 0 BON domain DUF2104 PF09877.9 gi|304314224|ref|YP_003849371.1| - 0.037 14.3 5.4 0.15 12.3 0.4 2.8 2 1 1 3 3 3 0 Predicted membrane protein (DUF2104) Apq12 PF12716.7 gi|304314224|ref|YP_003849371.1| - 1.4 8.9 6.6 11 6.0 0.0 3.1 3 0 0 3 3 3 0 Nuclear pore assembly and biogenesis Aminotran_1_2 PF00155.21 gi|304314225|ref|YP_003849372.1| - 6.2e-66 223.0 0.0 7e-66 222.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|304314225|ref|YP_003849372.1| - 4.1e-08 32.6 0.0 5.5e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|304314225|ref|YP_003849372.1| - 2.5e-05 23.0 0.0 4e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|304314225|ref|YP_003849372.1| - 4.2e-05 23.0 0.0 6.3e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|304314225|ref|YP_003849372.1| - 0.00011 21.7 0.0 0.00016 21.1 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF1611_N PF17396.2 gi|304314225|ref|YP_003849372.1| - 0.0045 17.2 0.1 0.039 14.2 0.0 2.4 2 1 0 3 3 3 1 Domain of unknown function (DUF1611_N) Rossmann-like domain Aminotran_3 PF00202.21 gi|304314225|ref|YP_003849372.1| - 0.024 13.3 0.0 0.037 12.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III Radical_SAM PF04055.21 gi|304314226|ref|YP_003849373.1| - 1.4e-15 58.1 0.0 6.7e-15 55.9 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|304314226|ref|YP_003849373.1| - 0.0076 16.3 0.0 0.042 13.9 0.0 2.1 2 0 0 2 2 2 1 B12 binding domain CTP_transf_like PF01467.26 gi|304314227|ref|YP_003849374.1| - 8.7e-18 64.9 0.0 1.1e-17 64.6 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|304314227|ref|YP_003849374.1| - 0.011 15.6 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 0 FAD synthetase NTPase_I-T PF01931.18 gi|304314228|ref|YP_003849375.1| - 5.8e-53 179.0 0.0 6.5e-53 178.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 STT3 PF02516.14 gi|304314229|ref|YP_003849376.1| - 1.8e-74 251.5 21.8 5.4e-74 249.9 21.8 1.7 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit STT3 PF02516.14 gi|304314230|ref|YP_003849377.1| - 1.2e-61 209.2 42.1 3.1e-61 207.8 42.1 1.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Class_IIIsignal PF04021.12 gi|304314231|ref|YP_003849378.1| - 4.1e-06 26.6 8.7 4.1e-06 26.6 8.7 1.5 2 0 0 2 2 2 1 Class III signal peptide Class_IIIsignal PF04021.12 gi|304314232|ref|YP_003849379.1| - 4.3e-07 29.7 8.3 5.6e-07 29.3 8.3 1.1 1 0 0 1 1 1 1 Class III signal peptide Flp1_like PF16982.5 gi|304314232|ref|YP_003849379.1| - 0.00057 19.2 0.1 0.00069 19.0 0.1 1.3 1 0 0 1 1 1 1 Putative Flagellin, Flp1-like, domain ABC_export PF16962.5 gi|304314232|ref|YP_003849379.1| - 0.0095 14.4 0.1 0.0095 14.4 0.1 1.0 1 0 0 1 1 1 1 Putative ABC exporter Phage_holin_3_6 PF07332.11 gi|304314232|ref|YP_003849379.1| - 0.016 15.3 0.0 0.017 15.1 0.0 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF515 PF04415.12 gi|304314232|ref|YP_003849379.1| - 0.051 12.0 0.1 0.053 11.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF515) FeoB_associated PF12669.7 gi|304314232|ref|YP_003849379.1| - 0.24 11.8 0.8 0.41 11.1 0.8 1.3 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein UPF0146 PF03686.13 gi|304314233|ref|YP_003849380.1| - 0.054 13.4 0.0 0.079 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Class_IIIsignal PF04021.12 gi|304314234|ref|YP_003849381.1| - 5.5e-07 29.3 7.7 9.1e-07 28.7 7.7 1.4 1 0 0 1 1 1 1 Class III signal peptide Flp_Fap PF04964.14 gi|304314234|ref|YP_003849381.1| - 0.2 11.5 3.2 0.32 10.9 3.2 1.5 1 1 0 1 1 1 0 Flp/Fap pilin component Regulator_TrmB PF11495.8 gi|304314235|ref|YP_003849382.1| - 0.063 12.5 0.7 0.12 11.5 0.7 1.4 1 1 0 1 1 1 0 Archaeal transcriptional regulator TrmB PLDc_2 PF13091.6 gi|304314235|ref|YP_003849382.1| - 0.065 13.1 0.2 0.11 12.3 0.2 1.4 1 0 0 1 1 1 0 PLD-like domain Neurensin PF14927.6 gi|304314235|ref|YP_003849382.1| - 0.89 9.3 2.5 1.7 8.4 2.5 1.4 1 0 0 1 1 1 0 Neurensin DUF1418 PF07214.12 gi|304314235|ref|YP_003849382.1| - 3.5 7.5 6.4 1.3 8.9 0.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1418) Lactamase_B_3 PF13483.6 gi|304314236|ref|YP_003849383.1| - 5.7e-27 94.6 0.0 7.4e-27 94.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|304314236|ref|YP_003849383.1| - 6.2e-21 74.8 0.1 1e-20 74.1 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|304314236|ref|YP_003849383.1| - 1.1e-18 68.0 1.5 1.3e-18 67.8 1.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily PAS PF00989.25 gi|304314236|ref|YP_003849383.1| - 0.0015 18.5 0.0 0.0024 17.9 0.0 1.3 1 0 0 1 1 1 1 PAS fold MMR_HSR1 PF01926.23 gi|304314237|ref|YP_003849384.1| - 1.3e-16 60.7 0.0 1.8e-16 60.3 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|304314237|ref|YP_003849384.1| - 1.2e-10 41.2 0.2 0.00071 19.2 0.0 3.6 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|304314237|ref|YP_003849384.1| - 3e-07 30.1 0.0 0.0085 15.6 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family Septin PF00735.18 gi|304314237|ref|YP_003849384.1| - 7.2e-06 25.5 0.0 7.9e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Septin Roc PF08477.13 gi|304314237|ref|YP_003849384.1| - 1.1e-05 25.7 0.0 0.0048 17.1 0.0 2.2 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase FeoB_N PF02421.18 gi|304314237|ref|YP_003849384.1| - 0.00014 21.4 0.1 0.0012 18.3 0.1 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|304314237|ref|YP_003849384.1| - 0.00031 20.7 0.0 0.4 10.6 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|304314237|ref|YP_003849384.1| - 0.00031 20.2 0.1 0.15 11.5 0.0 2.9 2 2 1 3 3 3 1 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|304314237|ref|YP_003849384.1| - 0.001 19.1 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA_24 PF13479.6 gi|304314237|ref|YP_003849384.1| - 0.002 17.9 0.0 0.0029 17.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain Ras PF00071.22 gi|304314237|ref|YP_003849384.1| - 0.011 15.4 0.0 4.3 6.9 0.0 2.9 1 1 0 2 2 2 0 Ras family RNA_helicase PF00910.22 gi|304314237|ref|YP_003849384.1| - 0.014 15.8 0.0 0.029 14.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Dynamin_N PF00350.23 gi|304314237|ref|YP_003849384.1| - 0.016 15.3 0.0 2 8.4 0.0 2.3 1 1 1 2 2 2 0 Dynamin family AAA PF00004.29 gi|304314237|ref|YP_003849384.1| - 0.023 15.1 0.0 0.052 14.0 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|304314237|ref|YP_003849384.1| - 0.034 14.1 0.0 0.052 13.5 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|304314237|ref|YP_003849384.1| - 0.12 12.0 0.0 0.39 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|304314237|ref|YP_003849384.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain PPV_E1_C PF00519.17 gi|304314237|ref|YP_003849384.1| - 0.14 11.0 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase DUF2073 PF09846.9 gi|304314238|ref|YP_003849385.1| - 9.5e-35 118.6 1.7 1.1e-34 118.4 1.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF2072 PF09845.9 gi|304314239|ref|YP_003849386.1| - 1.4e-19 70.7 6.1 2.2e-09 37.6 1.5 2.0 1 1 1 2 2 2 2 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|304314239|ref|YP_003849386.1| - 0.0038 17.3 1.4 0.0064 16.6 1.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|304314239|ref|YP_003849386.1| - 0.008 16.2 1.0 0.012 15.7 1.0 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_1 PF14446.6 gi|304314239|ref|YP_003849386.1| - 0.012 15.5 0.4 0.023 14.6 0.4 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TFIIS_C PF01096.18 gi|304314239|ref|YP_003849386.1| - 0.018 14.9 2.2 3.3 7.6 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2_4 PF13894.6 gi|304314239|ref|YP_003849386.1| - 0.038 14.8 2.7 0.71 10.9 0.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger DUF4187 PF13821.6 gi|304314239|ref|YP_003849386.1| - 0.054 13.3 1.0 0.085 12.7 1.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4187) DZR PF12773.7 gi|304314239|ref|YP_003849386.1| - 0.071 13.2 1.4 0.1 12.6 1.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2_11 PF16622.5 gi|304314239|ref|YP_003849386.1| - 0.1 12.4 3.0 0.11 12.3 0.1 2.1 2 0 0 2 2 2 0 zinc-finger C2H2-type TF_Zn_Ribbon PF08271.12 gi|304314239|ref|YP_003849386.1| - 0.1 12.1 3.3 0.52 9.9 0.1 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|304314239|ref|YP_003849386.1| - 0.23 11.4 3.5 11 6.1 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|304314239|ref|YP_003849386.1| - 0.29 10.9 4.7 14 5.6 0.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF1451 PF07295.11 gi|304314239|ref|YP_003849386.1| - 0.32 11.0 1.4 0.42 10.6 1.4 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain zinc_ribbon_5 PF13719.6 gi|304314239|ref|YP_003849386.1| - 0.32 10.8 2.5 11 5.8 0.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF983 PF06170.12 gi|304314239|ref|YP_003849386.1| - 0.34 11.3 1.9 2.1 8.8 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-C2H2 PF00096.26 gi|304314239|ref|YP_003849386.1| - 0.39 11.3 3.3 1.8 9.2 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf_C2H2_10 PF18414.1 gi|304314239|ref|YP_003849386.1| - 3.8 7.1 5.4 8.2 6.1 0.6 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-C2HC_2 PF13913.6 gi|304314239|ref|YP_003849386.1| - 4.8 7.2 7.1 2.7 8.0 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type FbpA PF05833.11 gi|304314240|ref|YP_003849387.1| - 1.1e-99 334.2 5.1 1.5e-99 333.9 5.1 1.0 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|304314240|ref|YP_003849387.1| - 1.4e-29 102.9 0.0 2.7e-29 102.0 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain H2TH PF06831.14 gi|304314240|ref|YP_003849387.1| - 0.00019 21.4 0.0 0.0019 18.1 0.0 2.5 2 0 0 2 2 2 1 Formamidopyrimidine-DNA glycosylase H2TH domain SfsA_N PF17746.1 gi|304314240|ref|YP_003849387.1| - 0.016 15.4 0.1 2.5 8.3 0.1 2.9 3 0 0 3 3 2 0 SfsA N-terminal OB domain SIN1_PH PF16979.5 gi|304314240|ref|YP_003849387.1| - 0.025 14.8 0.1 0.35 11.1 0.1 2.4 2 0 0 2 2 2 0 SAPK-interacting protein 1 (Sin1), Pleckstrin-homology Ribosomal_S13 PF00416.22 gi|304314240|ref|YP_003849387.1| - 0.042 14.2 1.5 0.12 12.7 0.0 2.5 3 0 0 3 3 3 0 Ribosomal protein S13/S18 PEP-utilisers_N PF05524.13 gi|304314240|ref|YP_003849387.1| - 0.057 13.6 3.0 9.3 6.5 0.8 3.4 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal Med9 PF07544.13 gi|304314240|ref|YP_003849387.1| - 0.066 13.3 8.7 0.25 11.5 1.3 2.7 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF2853 PF11015.8 gi|304314240|ref|YP_003849387.1| - 0.083 13.6 0.1 0.35 11.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2853) FeS_assembly_P PF01883.19 gi|304314240|ref|YP_003849387.1| - 0.22 11.7 0.6 1.7 8.8 0.0 2.6 3 0 0 3 3 2 0 Iron-sulfur cluster assembly protein SesA PF17107.5 gi|304314240|ref|YP_003849387.1| - 0.37 11.0 3.5 3.3 7.9 1.1 3.0 2 1 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases PKK PF12474.8 gi|304314240|ref|YP_003849387.1| - 0.67 10.1 7.7 0.47 10.6 1.3 2.3 2 0 0 2 2 2 0 Polo kinase kinase Mei5_like PF17021.5 gi|304314240|ref|YP_003849387.1| - 0.99 9.5 6.1 0.14 12.2 1.0 2.1 2 0 0 2 2 2 0 Putative double-strand recombination repair-like HIP1_clath_bdg PF16515.5 gi|304314240|ref|YP_003849387.1| - 2.4 8.8 5.2 0.83 10.3 0.2 2.5 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF5379 PF17350.2 gi|304314241|ref|YP_003849388.1| - 5.1e-10 39.5 6.8 6.4e-10 39.2 6.8 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5379) DUF2070 PF09843.9 gi|304314242|ref|YP_003849389.1| - 1.5e-183 611.2 11.9 1.7e-183 611.0 11.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Fumerase_C PF05683.12 gi|304314243|ref|YP_003849390.1| - 7.4e-43 146.3 0.0 1.2e-42 145.6 0.0 1.3 1 1 0 1 1 1 1 Fumarase C-terminus NYN PF01936.18 gi|304314246|ref|YP_003849393.1| - 4.8e-22 79.0 0.1 5.9e-22 78.7 0.1 1.1 1 0 0 1 1 1 1 NYN domain CoA_binding_2 PF13380.6 gi|304314246|ref|YP_003849393.1| - 0.14 12.7 0.0 0.19 12.2 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain Aminotran_5 PF00266.19 gi|304314247|ref|YP_003849394.1| - 3.7e-07 29.4 0.0 5.6e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V SelA PF03841.13 gi|304314247|ref|YP_003849394.1| - 5.3e-07 28.9 0.0 7.9e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|304314247|ref|YP_003849394.1| - 0.00015 20.4 0.0 0.00039 19.1 0.0 1.6 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|304314247|ref|YP_003849394.1| - 0.00017 21.0 0.0 0.00025 20.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|304314247|ref|YP_003849394.1| - 0.016 14.4 0.0 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II Peripla_BP_4 PF13407.6 gi|304314247|ref|YP_003849394.1| - 0.057 13.0 0.0 0.097 12.2 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain Birna_VP4 PF01768.16 gi|304314247|ref|YP_003849394.1| - 0.08 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Birnavirus VP4 protein OKR_DC_1 PF01276.20 gi|304314247|ref|YP_003849394.1| - 0.1 11.3 0.0 0.19 10.4 0.0 1.4 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, major domain RTC PF01137.21 gi|304314248|ref|YP_003849395.1| - 1.2e-54 184.9 0.0 1.4e-54 184.7 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|304314248|ref|YP_003849395.1| - 1.5e-21 76.8 0.2 3.1e-21 75.8 0.2 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain BPL_LplA_LipB PF03099.19 gi|304314249|ref|YP_003849396.1| - 4.6e-20 71.9 0.0 6.8e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|304314249|ref|YP_003849396.1| - 4.9e-12 45.6 1.0 1.2e-11 44.3 1.0 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 gi|304314249|ref|YP_003849396.1| - 3.5e-07 29.9 0.0 1.1e-06 28.3 0.0 1.6 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family CPSase_L_D2 PF02786.17 gi|304314250|ref|YP_003849397.1| - 3e-83 278.5 0.1 4.5e-83 277.9 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|304314250|ref|YP_003849397.1| - 4.2e-44 149.6 0.1 1.3e-43 148.0 0.0 1.9 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|304314250|ref|YP_003849397.1| - 3.7e-43 146.0 0.0 8.6e-43 144.8 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|304314250|ref|YP_003849397.1| - 1.2e-11 44.6 0.0 2.9e-11 43.3 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|304314250|ref|YP_003849397.1| - 5.3e-07 29.8 0.0 1.1e-06 28.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|304314250|ref|YP_003849397.1| - 2.9e-05 23.8 0.0 0.0002 21.0 0.0 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.19 gi|304314250|ref|YP_003849397.1| - 7e-05 22.7 0.0 0.00013 21.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|304314250|ref|YP_003849397.1| - 0.00028 20.5 0.0 0.00054 19.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|304314250|ref|YP_003849397.1| - 0.0013 18.3 0.0 0.0025 17.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|304314250|ref|YP_003849397.1| - 0.029 14.1 0.0 0.073 12.8 0.0 1.7 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 gi|304314250|ref|YP_003849397.1| - 0.078 12.2 0.0 0.16 11.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|304314250|ref|YP_003849397.1| - 0.098 12.2 0.0 0.42 10.2 0.0 2.1 1 1 1 2 2 2 0 ATP-grasp domain MTS PF05175.14 gi|304314251|ref|YP_003849398.1| - 3.8e-15 55.8 0.0 5.3e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|304314251|ref|YP_003849398.1| - 2e-11 43.8 1.2 2.6e-11 43.5 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|304314251|ref|YP_003849398.1| - 4e-11 42.9 0.1 5.6e-11 42.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|304314251|ref|YP_003849398.1| - 1.2e-09 38.7 0.1 2e-09 38.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|304314251|ref|YP_003849398.1| - 3.3e-08 33.4 0.0 4.5e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|304314251|ref|YP_003849398.1| - 6.7e-07 29.2 0.7 3e-06 27.1 0.7 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 DUF43 PF01861.16 gi|304314251|ref|YP_003849398.1| - 5e-06 25.9 0.0 6.9e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_11 PF08241.12 gi|304314251|ref|YP_003849398.1| - 1.3e-05 25.7 0.5 2.8e-05 24.7 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|304314251|ref|YP_003849398.1| - 5.9e-05 23.1 0.0 7e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|304314251|ref|YP_003849398.1| - 0.0024 18.6 0.1 0.005 17.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|304314251|ref|YP_003849398.1| - 0.0042 16.5 0.1 0.0059 16.0 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_16 PF10294.9 gi|304314251|ref|YP_003849398.1| - 0.0064 16.3 0.2 0.0093 15.7 0.2 1.2 1 0 0 1 1 1 1 Lysine methyltransferase GidB PF02527.15 gi|304314251|ref|YP_003849398.1| - 0.0071 15.7 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_18 PF12847.7 gi|304314251|ref|YP_003849398.1| - 0.021 14.8 0.1 0.031 14.2 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain FmrO PF07091.11 gi|304314251|ref|YP_003849398.1| - 0.022 14.3 0.1 0.026 14.1 0.1 1.3 1 1 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_23 PF13489.6 gi|304314251|ref|YP_003849398.1| - 0.044 13.6 0.0 0.08 12.8 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.16 gi|304314251|ref|YP_003849398.1| - 0.07 12.4 0.0 0.25 10.6 0.0 1.8 1 1 0 1 1 1 0 N-6 DNA Methylase FtsJ PF01728.19 gi|304314251|ref|YP_003849398.1| - 0.16 12.1 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltrn_RNA_3 PF02598.17 gi|304314252|ref|YP_003849399.1| - 1.5e-54 185.4 0.0 6.7e-54 183.3 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|304314252|ref|YP_003849399.1| - 0.029 14.5 0.0 10 6.3 0.0 2.2 2 0 0 2 2 2 0 SpoU rRNA Methylase family SPOUT_MTase_2 PF14419.6 gi|304314252|ref|YP_003849399.1| - 0.033 13.6 0.1 0.78 9.1 0.0 2.2 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP Ribosomal_L3 PF00297.22 gi|304314253|ref|YP_003849400.1| - 2.5e-98 329.5 0.5 2.9e-98 329.3 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|304314254|ref|YP_003849401.1| - 2e-49 167.9 0.2 2.3e-49 167.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF2149 PF09919.9 gi|304314254|ref|YP_003849401.1| - 0.099 12.9 0.0 0.25 11.6 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2149) Ribosomal_L23 PF00276.20 gi|304314255|ref|YP_003849402.1| - 1.2e-16 60.9 2.6 1.8e-16 60.3 2.6 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 Dak1_2 PF13684.6 gi|304314255|ref|YP_003849402.1| - 0.034 13.2 0.0 0.038 13.1 0.0 1.0 1 0 0 1 1 1 0 Dihydroxyacetone kinase family Ribosomal_L2_C PF03947.18 gi|304314256|ref|YP_003849403.1| - 4.6e-47 159.3 1.2 7.2e-47 158.7 1.2 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|304314256|ref|YP_003849403.1| - 1.4e-23 82.6 0.0 3.8e-23 81.2 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|304314257|ref|YP_003849404.1| - 8.1e-33 112.2 0.5 1e-32 111.8 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S19 Myb_DNA-bind_7 PF15963.5 gi|304314257|ref|YP_003849404.1| - 0.12 12.2 0.5 0.21 11.5 0.5 1.3 1 0 0 1 1 1 0 Myb DNA-binding like Citrate_synt PF00285.21 gi|304314257|ref|YP_003849404.1| - 0.17 11.0 0.0 0.18 10.9 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L22 PF00237.19 gi|304314258|ref|YP_003849405.1| - 4.5e-31 107.1 0.0 5.5e-31 106.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e acVLRF1 PF18859.1 gi|304314258|ref|YP_003849405.1| - 0.046 14.0 0.0 0.069 13.4 0.0 1.3 1 0 0 1 1 1 0 Actinobacteria/chloroflexi VLRF1 release factor Ribosomal_S3_C PF00189.20 gi|304314259|ref|YP_003849406.1| - 6.9e-22 77.8 1.8 1.3e-21 76.8 1.8 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|304314259|ref|YP_003849406.1| - 1.6e-17 63.1 0.1 4.3e-17 61.7 0.1 1.8 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|304314259|ref|YP_003849406.1| - 0.0087 15.9 0.1 0.055 13.3 0.0 2.3 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|304314259|ref|YP_003849406.1| - 0.011 15.6 0.0 0.029 14.2 0.0 1.8 1 0 0 1 1 1 0 KH domain KH_5 PF13184.6 gi|304314259|ref|YP_003849406.1| - 0.11 12.6 1.5 0.15 12.1 0.1 2.0 2 0 0 2 2 2 0 NusA-like KH domain Ribosomal_L29 PF00831.23 gi|304314260|ref|YP_003849407.1| - 1.6e-18 66.4 1.9 1.9e-18 66.2 1.9 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Amidoligase_2 PF12224.8 gi|304314260|ref|YP_003849407.1| - 0.00099 18.9 0.0 0.0011 18.8 0.0 1.0 1 0 0 1 1 1 1 Putative amidoligase enzyme DUF4355 PF14265.6 gi|304314260|ref|YP_003849407.1| - 0.00099 19.3 0.3 0.00099 19.3 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4355) ING PF12998.7 gi|304314260|ref|YP_003849407.1| - 0.017 15.7 0.8 0.02 15.5 0.8 1.0 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Spectrin_like PF18373.1 gi|304314260|ref|YP_003849407.1| - 0.02 14.9 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 Spectrin like domain SUI1 PF01253.22 gi|304314261|ref|YP_003849408.1| - 1.2e-19 70.6 1.7 1.5e-19 70.3 1.7 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|304314261|ref|YP_003849408.1| - 6.8e-06 26.3 0.2 9.5e-06 25.8 0.2 1.2 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|304314261|ref|YP_003849408.1| - 0.037 13.7 1.3 0.054 13.2 1.3 1.2 1 0 0 1 1 1 0 DTW domain DUF1858 PF08984.11 gi|304314261|ref|YP_003849408.1| - 0.037 14.2 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1858) UPF0086 PF01868.16 gi|304314262|ref|YP_003849409.1| - 3.7e-22 78.0 0.4 4.2e-22 77.9 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Myosin_N PF02736.19 gi|304314262|ref|YP_003849409.1| - 0.00059 19.6 3.5 0.0039 17.0 0.3 2.1 2 0 0 2 2 2 2 Myosin N-terminal SH3-like domain MS_channel PF00924.18 gi|304314262|ref|YP_003849409.1| - 0.12 11.9 0.1 0.18 11.3 0.1 1.3 1 1 0 1 1 1 0 Mechanosensitive ion channel Ribosomal_S17 PF00366.20 gi|304314263|ref|YP_003849410.1| - 1.8e-26 92.1 4.2 2.3e-26 91.7 4.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.19 gi|304314264|ref|YP_003849411.1| - 2.8e-35 121.0 1.4 3.2e-35 120.9 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e FeoA PF04023.14 gi|304314264|ref|YP_003849411.1| - 0.1 12.9 2.7 0.34 11.2 1.4 2.3 1 1 1 2 2 2 0 FeoA domain Ribosomal_L26 PF16906.5 gi|304314265|ref|YP_003849412.1| - 1.5e-34 118.3 0.7 1.8e-34 118.0 0.7 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|304314265|ref|YP_003849412.1| - 7.2e-10 38.5 3.6 7.2e-10 38.5 3.6 1.7 2 0 0 2 2 2 1 KOW motif hSH3 PF14603.6 gi|304314265|ref|YP_003849412.1| - 0.058 13.8 0.0 0.082 13.4 0.0 1.4 1 1 0 1 1 1 0 Helically-extended SH3 domain Agenet PF05641.12 gi|304314265|ref|YP_003849412.1| - 0.098 13.1 0.2 0.17 12.4 0.2 1.4 1 0 0 1 1 1 0 Agenet domain Ribosomal_S4e PF00900.20 gi|304314266|ref|YP_003849413.1| - 2.9e-28 97.6 0.0 9.6e-28 95.9 0.0 1.8 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|304314266|ref|YP_003849413.1| - 4.1e-15 55.6 7.5 7.8e-15 54.7 7.5 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|304314266|ref|YP_003849413.1| - 8e-12 44.7 0.1 1.5e-11 43.8 0.1 1.5 1 0 0 1 1 1 1 S4 domain 40S_S4_C PF16121.5 gi|304314266|ref|YP_003849413.1| - 2.8e-05 23.7 0.0 6.7e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 40S ribosomal protein S4 C-terminus KOW PF00467.29 gi|304314266|ref|YP_003849413.1| - 0.00032 20.5 1.3 0.00061 19.6 0.0 2.2 2 0 0 2 2 2 1 KOW motif Ribosomal_L5_C PF00673.21 gi|304314267|ref|YP_003849414.1| - 8.9e-24 83.5 0.0 1.6e-23 82.7 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|304314267|ref|YP_003849414.1| - 7.9e-19 67.7 0.1 1.9e-18 66.5 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|304314268|ref|YP_003849415.1| - 1.7e-13 50.1 4.1 1.8e-13 50.0 4.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|304314268|ref|YP_003849415.1| - 0.033 14.1 2.9 0.049 13.5 2.9 1.3 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Ribosomal_S8 PF00410.19 gi|304314269|ref|YP_003849416.1| - 2.8e-29 101.6 0.0 3.3e-29 101.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|304314270|ref|YP_003849417.1| - 1.5e-35 121.7 11.5 1e-21 77.3 3.3 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 CooT PF10133.9 gi|304314270|ref|YP_003849417.1| - 0.036 14.3 0.3 5.2 7.4 0.0 3.2 3 0 0 3 3 3 0 CO dehydrogenase accessory protein CooT Ribosomal_L32e PF01655.18 gi|304314271|ref|YP_003849418.1| - 2.2e-39 134.2 0.6 2.4e-39 134.1 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|304314272|ref|YP_003849419.1| - 2e-55 186.8 11.6 2.2e-55 186.7 11.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L5e PF17144.4 gi|304314273|ref|YP_003849420.1| - 1.4e-36 126.0 4.5 3.1e-25 89.0 1.9 2.8 2 1 1 3 3 3 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|304314273|ref|YP_003849420.1| - 7.4e-08 32.8 0.1 1e-07 32.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L18_c PF14204.6 gi|304314273|ref|YP_003849420.1| - 1.1e-07 32.7 0.2 2.1e-07 31.8 0.2 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_S5 PF00333.20 gi|304314274|ref|YP_003849421.1| - 2.2e-24 85.2 1.5 5e-24 84.1 1.5 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|304314274|ref|YP_003849421.1| - 4.7e-22 77.2 0.1 8e-22 76.5 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|304314275|ref|YP_003849422.1| - 1.2e-14 53.9 0.0 2.1e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|304314276|ref|YP_003849423.1| - 1.2e-22 80.9 0.2 1.5e-22 80.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|304314276|ref|YP_003849423.1| - 0.12 11.8 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein 60S L18 and 50S L18e SecY PF00344.20 gi|304314277|ref|YP_003849424.1| - 8.2e-72 242.0 17.2 9.9e-72 241.8 17.2 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|304314277|ref|YP_003849424.1| - 1.9e-13 50.0 1.8 4.5e-13 48.8 1.2 2.0 2 0 0 2 2 2 1 Plug domain of Sec61p Phage_holin_5_1 PF06946.11 gi|304314277|ref|YP_003849424.1| - 0.034 14.5 0.1 0.12 12.7 0.1 1.9 1 0 0 1 1 1 0 Bacteriophage A118-like holin, Hol118 Sec61_beta PF03911.16 gi|304314277|ref|YP_003849424.1| - 0.076 13.1 0.9 0.43 10.7 0.9 2.4 1 0 0 1 1 1 0 Sec61beta family RseC_MucC PF04246.12 gi|304314277|ref|YP_003849424.1| - 0.089 12.7 6.5 0.21 11.6 0.1 3.2 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC Phage_holin_5_2 PF16079.5 gi|304314277|ref|YP_003849424.1| - 0.54 10.6 5.9 0.93 9.9 0.1 3.6 3 0 0 3 3 3 0 Phage holin family Hol44, in holin superfamily V AAA_17 PF13207.6 gi|304314278|ref|YP_003849425.1| - 7.2e-40 136.6 0.0 9.3e-40 136.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|304314278|ref|YP_003849425.1| - 5.9e-08 33.3 0.1 2.1e-07 31.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|304314278|ref|YP_003849425.1| - 1e-05 25.7 0.0 1.8e-05 24.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|304314278|ref|YP_003849425.1| - 0.0071 16.3 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 NTPase dNK PF01712.19 gi|304314278|ref|YP_003849425.1| - 0.011 15.5 0.1 0.066 13.1 0.0 2.0 2 0 0 2 2 2 0 Deoxynucleoside kinase DUF2075 PF09848.9 gi|304314278|ref|YP_003849425.1| - 0.014 14.7 0.5 0.046 12.9 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) cobW PF02492.19 gi|304314278|ref|YP_003849425.1| - 0.022 14.3 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Thymidylate_kin PF02223.17 gi|304314278|ref|YP_003849425.1| - 0.034 13.8 0.3 0.18 11.4 0.1 2.1 2 1 0 2 2 2 0 Thymidylate kinase Zeta_toxin PF06414.12 gi|304314278|ref|YP_003849425.1| - 0.044 13.0 0.5 0.16 11.2 0.0 2.1 2 1 0 2 2 2 0 Zeta toxin Viral_helicase1 PF01443.18 gi|304314278|ref|YP_003849425.1| - 0.059 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase EMC3_TMCO1 PF01956.16 gi|304314279|ref|YP_003849426.1| - 3.1e-44 150.7 10.1 3.5e-44 150.5 10.1 1.0 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|304314279|ref|YP_003849426.1| - 0.00021 21.3 6.0 0.00028 20.8 6.0 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein DUF2232 PF09991.9 gi|304314279|ref|YP_003849426.1| - 0.0026 17.0 5.6 0.0042 16.3 5.6 1.6 1 1 0 1 1 1 1 Predicted membrane protein (DUF2232) DUF2721 PF11026.8 gi|304314279|ref|YP_003849426.1| - 0.006 16.5 0.1 0.0082 16.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2721) Peroxin-13_N PF04088.13 gi|304314279|ref|YP_003849426.1| - 0.015 15.6 0.3 0.023 15.0 0.3 1.3 1 0 0 1 1 1 0 Peroxin 13, N-terminal region DUF4199 PF13858.6 gi|304314279|ref|YP_003849426.1| - 0.024 15.0 9.1 0.024 15.0 9.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) Phage_Gp23 PF10669.9 gi|304314279|ref|YP_003849426.1| - 0.032 14.6 4.5 0.046 14.1 4.5 1.2 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) Bul1_C PF04426.12 gi|304314279|ref|YP_003849426.1| - 0.033 13.6 1.6 0.051 13.0 1.6 1.2 1 0 0 1 1 1 0 Bul1 C terminus GTA_holin_3TM PF11351.8 gi|304314279|ref|YP_003849426.1| - 0.044 14.3 1.6 0.068 13.7 1.6 1.3 1 0 0 1 1 1 0 Holin of 3TMs, for gene-transfer release PhyH PF05721.13 gi|304314279|ref|YP_003849426.1| - 0.051 13.8 0.0 0.064 13.5 0.0 1.1 1 0 0 1 1 1 0 Phytanoyl-CoA dioxygenase (PhyH) Peptidase_S49_N PF08496.10 gi|304314279|ref|YP_003849426.1| - 0.065 13.3 0.9 0.096 12.8 0.9 1.3 1 0 0 1 1 1 0 Peptidase family S49 N-terminal DPM3 PF08285.11 gi|304314279|ref|YP_003849426.1| - 0.065 13.4 0.1 0.065 13.4 0.1 2.7 2 1 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Inj_translocase PF16928.5 gi|304314279|ref|YP_003849426.1| - 0.14 11.6 1.8 0.18 11.3 1.8 1.1 1 0 0 1 1 1 0 DNA/protein translocase of phage P22 injectosome LapA_dom PF06305.11 gi|304314279|ref|YP_003849426.1| - 0.27 11.1 1.5 0.9 9.4 1.5 2.0 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain OmpH PF03938.14 gi|304314279|ref|YP_003849426.1| - 0.28 11.5 9.9 0.39 11.1 9.9 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF2207 PF09972.9 gi|304314279|ref|YP_003849426.1| - 2.3 6.9 3.7 0.92 8.2 0.9 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF2418 PF10332.9 gi|304314279|ref|YP_003849426.1| - 5 7.7 8.7 21 5.7 0.1 2.4 3 0 0 3 3 2 0 Protein of unknown function (DUF2418) Ribosomal_L34e PF01199.18 gi|304314280|ref|YP_003849427.1| - 1.6e-27 95.6 7.2 1.9e-27 95.4 7.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DZR PF12773.7 gi|304314280|ref|YP_003849427.1| - 0.0061 16.5 0.3 0.0096 15.9 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon C1_2 PF03107.16 gi|304314280|ref|YP_003849427.1| - 0.023 15.0 0.3 4.5 7.7 0.0 2.2 2 0 0 2 2 2 0 C1 domain Tnp_zf-ribbon_2 PF13842.6 gi|304314280|ref|YP_003849427.1| - 0.058 14.2 1.6 0.79 10.6 0.1 2.4 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF2197 PF09963.9 gi|304314280|ref|YP_003849427.1| - 0.15 12.4 1.9 0.15 12.3 0.4 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) PHD PF00628.29 gi|304314280|ref|YP_003849427.1| - 0.16 11.9 1.6 0.85 9.6 1.6 1.9 1 1 0 1 1 1 0 PHD-finger Zn_ribbon_SprT PF17283.2 gi|304314280|ref|YP_003849427.1| - 6.9 6.7 11.2 3.7 7.5 0.6 2.5 3 0 0 3 3 3 0 SprT-like zinc ribbon domain Cytidylate_kin2 PF13189.6 gi|304314281|ref|YP_003849428.1| - 8.5e-24 84.6 3.3 9.2e-23 81.3 3.3 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|304314281|ref|YP_003849428.1| - 3e-15 56.9 0.1 3.9e-15 56.5 0.1 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|304314281|ref|YP_003849428.1| - 6.5e-12 45.6 4.3 6e-07 29.4 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|304314281|ref|YP_003849428.1| - 1.8e-10 41.4 0.2 2.7e-10 40.8 0.2 1.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|304314281|ref|YP_003849428.1| - 0.00018 21.8 0.2 0.00041 20.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|304314281|ref|YP_003849428.1| - 0.017 15.2 0.2 0.037 14.1 0.2 1.8 1 1 0 1 1 1 0 Adenylate kinase SKI PF01202.22 gi|304314281|ref|YP_003849428.1| - 0.02 15.0 0.3 5.2 7.2 0.0 2.2 2 0 0 2 2 2 0 Shikimate kinase AAA_33 PF13671.6 gi|304314281|ref|YP_003849428.1| - 0.029 14.6 0.1 0.051 13.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|304314281|ref|YP_003849428.1| - 0.034 13.9 0.2 0.071 12.8 0.1 1.7 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family dNK PF01712.19 gi|304314281|ref|YP_003849428.1| - 0.052 13.4 0.4 1.7 8.5 0.1 2.2 1 1 0 2 2 2 0 Deoxynucleoside kinase CoaE PF01121.20 gi|304314281|ref|YP_003849428.1| - 0.1 12.3 1.8 0.14 11.8 0.2 1.9 1 1 1 2 2 2 0 Dephospho-CoA kinase Sulfotransfer_3 PF13469.6 gi|304314281|ref|YP_003849428.1| - 0.13 12.6 0.0 0.17 12.2 0.0 1.4 1 1 0 1 1 1 0 Sulfotransferase family KOW PF00467.29 gi|304314282|ref|YP_003849429.1| - 0.0023 17.8 2.4 0.0036 17.2 2.4 1.4 1 0 0 1 1 1 1 KOW motif TruB_N PF01509.18 gi|304314283|ref|YP_003849430.1| - 2.3e-28 99.4 0.1 7.8e-25 88.0 0.1 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|304314283|ref|YP_003849430.1| - 3.8e-25 87.8 0.0 6.9e-25 87.0 0.0 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|304314283|ref|YP_003849430.1| - 2e-18 66.1 0.9 4e-18 65.2 0.9 1.5 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|304314283|ref|YP_003849430.1| - 2e-16 59.8 0.1 4.1e-16 58.8 0.1 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain Ribosomal_S13 PF00416.22 gi|304314284|ref|YP_003849431.1| - 1.1e-43 148.7 0.9 1.2e-43 148.5 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|304314284|ref|YP_003849431.1| - 0.00079 18.3 0.0 0.00095 18.0 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF1192 PF06698.11 gi|304314284|ref|YP_003849431.1| - 0.013 15.5 0.4 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) DUF5053 PF16476.5 gi|304314284|ref|YP_003849431.1| - 0.03 14.0 0.0 0.3 10.8 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF5053) S4 PF01479.25 gi|304314285|ref|YP_003849432.1| - 1.9e-14 53.1 0.3 3.8e-14 52.1 0.3 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|304314285|ref|YP_003849432.1| - 8.4e-05 23.4 0.7 0.00019 22.3 0.3 1.8 2 0 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.19 gi|304314286|ref|YP_003849433.1| - 5.6e-45 152.3 2.7 7.3e-45 151.9 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.26 gi|304314287|ref|YP_003849434.1| - 2.1e-32 111.8 0.0 4.2e-32 110.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|304314287|ref|YP_003849434.1| - 8.2e-19 66.8 0.0 1.1e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_9 PF13187.6 gi|304314287|ref|YP_003849434.1| - 2.2e-07 31.0 13.8 4.5e-07 29.9 10.1 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|304314287|ref|YP_003849434.1| - 1.2e-05 24.8 12.8 0.00055 19.6 2.3 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304314287|ref|YP_003849434.1| - 3.2e-05 24.0 10.4 3.2e-05 24.0 10.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314287|ref|YP_003849434.1| - 0.00015 22.3 14.7 0.00016 22.2 11.1 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain RNA_pol_L_2 PF13656.6 gi|304314287|ref|YP_003849434.1| - 0.00082 19.1 0.0 0.0022 17.7 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_16 PF13484.6 gi|304314287|ref|YP_003849434.1| - 0.011 16.6 15.3 0.041 14.8 0.5 3.0 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain UPF0254 PF06787.11 gi|304314287|ref|YP_003849434.1| - 0.12 12.2 0.1 0.3 10.8 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) Fer4_6 PF12837.7 gi|304314287|ref|YP_003849434.1| - 0.14 12.3 23.7 0.11 12.7 3.3 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304314287|ref|YP_003849434.1| - 0.24 11.6 24.5 0.075 13.2 2.5 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304314287|ref|YP_003849434.1| - 0.35 11.4 17.4 0.23 11.9 1.4 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|304314287|ref|YP_003849434.1| - 0.39 10.9 10.6 2.6 8.3 10.6 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|304314287|ref|YP_003849434.1| - 1.7 9.4 15.0 0.47 11.2 1.8 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|304314287|ref|YP_003849434.1| - 3.9 8.6 28.5 0.44 11.6 4.1 3.6 3 0 0 3 3 2 0 4Fe-4S binding domain Ribosomal_L18 PF17135.4 gi|304314288|ref|YP_003849435.1| - 1.7e-15 56.9 0.1 1.9e-15 56.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|304314288|ref|YP_003849435.1| - 2.6e-09 37.8 0.3 1.3e-08 35.6 0.3 1.9 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Phytochelatin_C PF09328.10 gi|304314288|ref|YP_003849435.1| - 0.14 11.5 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1984) Ribosomal_L13 PF00572.18 gi|304314289|ref|YP_003849436.1| - 3.6e-11 43.4 0.0 5.7e-09 36.3 0.0 2.1 1 1 1 2 2 2 2 Ribosomal protein L13 HTH_ABP1_N PF18107.1 gi|304314289|ref|YP_003849436.1| - 0.038 13.7 0.0 0.09 12.5 0.1 1.5 2 0 0 2 2 2 0 Fission yeast centromere protein N-terminal domain Ribosomal_S9 PF00380.19 gi|304314290|ref|YP_003849437.1| - 5.6e-34 117.3 0.3 6.3e-34 117.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 SnAC PF14619.6 gi|304314290|ref|YP_003849437.1| - 0.064 13.9 0.8 0.11 13.2 0.8 1.3 1 0 0 1 1 1 0 Snf2-ATP coupling, chromatin remodelling complex RNA_pol_N PF01194.17 gi|304314291|ref|YP_003849438.1| - 8.8e-27 93.2 0.2 9.4e-27 93.1 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|304314291|ref|YP_003849438.1| - 0.024 14.9 0.1 0.029 14.6 0.1 1.2 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) RNA_pol_Rpb6 PF01192.22 gi|304314292|ref|YP_003849439.1| - 2.1e-14 53.2 0.1 2.3e-14 53.0 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.22 gi|304314293|ref|YP_003849440.1| - 1.3e-74 251.1 0.0 1.7e-74 250.7 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|304314293|ref|YP_003849440.1| - 1.8e-40 138.1 0.0 3.4e-40 137.3 0.0 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|304314293|ref|YP_003849440.1| - 2.1e-10 40.5 0.0 3.4e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like C6_DPF PF10170.9 gi|304314293|ref|YP_003849440.1| - 0.034 14.5 0.0 0.059 13.7 0.0 1.3 1 0 0 1 1 1 0 Cysteine-rich domain Ribosomal_S2 PF00318.20 gi|304314294|ref|YP_003849441.1| - 8.1e-26 90.6 0.0 7.1e-12 45.0 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Fmp27_WPPW PF10359.9 gi|304314294|ref|YP_003849441.1| - 0.11 11.3 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Memo PF01875.17 gi|304314295|ref|YP_003849442.1| - 1.2e-91 306.7 0.0 1.3e-91 306.5 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|304314295|ref|YP_003849442.1| - 0.002 17.3 0.0 0.0027 16.8 0.0 1.4 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GHMP_kinases_N PF00288.26 gi|304314296|ref|YP_003849443.1| - 2e-15 56.8 0.2 5.4e-15 55.4 0.2 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|304314296|ref|YP_003849443.1| - 1.4e-10 41.4 0.9 4.9e-10 39.6 0.3 2.1 2 1 1 3 3 3 1 GHMP kinases C terminal DUF1525 PF07511.11 gi|304314296|ref|YP_003849443.1| - 0.091 12.9 0.5 0.34 11.1 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1525) AA_kinase PF00696.28 gi|304314297|ref|YP_003849444.1| - 3e-45 154.7 0.0 3.3e-45 154.5 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.18 gi|304314298|ref|YP_003849445.1| - 1.4e-32 113.1 5.1 3.5e-22 78.9 4.6 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase DUF561 PF04481.12 gi|304314298|ref|YP_003849445.1| - 3.6e-06 26.3 0.9 0.00072 18.8 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF561) IMPDH PF00478.25 gi|304314298|ref|YP_003849445.1| - 1.7e-05 24.0 7.4 0.0008 18.5 6.3 2.7 1 1 1 2 2 2 2 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 gi|304314298|ref|YP_003849445.1| - 7.1e-05 22.4 0.7 0.01 15.3 0.2 3.2 3 1 0 3 3 3 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|304314298|ref|YP_003849445.1| - 9.2e-05 21.8 0.3 9.2e-05 21.8 0.3 2.3 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.17 gi|304314298|ref|YP_003849445.1| - 0.00011 21.4 2.4 0.00011 21.4 2.4 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase ThiG PF05690.14 gi|304314298|ref|YP_003849445.1| - 0.0094 15.3 6.8 0.18 11.1 0.4 2.7 2 1 1 3 3 3 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|304314298|ref|YP_003849445.1| - 0.012 15.0 3.2 0.012 15.0 3.2 1.9 2 0 0 2 2 2 0 Nitronate monooxygenase SOR_SNZ PF01680.17 gi|304314298|ref|YP_003849445.1| - 0.23 11.2 2.9 0.2 11.4 0.5 1.9 2 0 0 2 2 2 0 SOR/SNZ family RMMBL PF07521.12 gi|304314299|ref|YP_003849446.1| - 3.1e-13 49.4 0.9 1.3e-11 44.2 0.1 2.5 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|304314299|ref|YP_003849446.1| - 2.1e-09 37.2 0.2 5.1e-09 35.9 0.2 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|304314299|ref|YP_003849446.1| - 7.4e-08 32.6 3.6 2.5e-07 30.9 3.6 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily polyprenyl_synt PF00348.17 gi|304314300|ref|YP_003849447.1| - 4.3e-80 268.5 0.0 5.4e-80 268.1 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase tRNA-synt_1c PF00749.21 gi|304314301|ref|YP_003849448.1| - 2.9e-82 276.1 0.0 4.3e-82 275.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|304314301|ref|YP_003849448.1| - 1.7e-24 86.7 0.0 3.1e-24 85.8 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1f PF01921.18 gi|304314301|ref|YP_003849448.1| - 0.021 13.8 0.0 4.5 6.1 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) NTP_transf_2 PF01909.23 gi|304314302|ref|YP_003849449.1| - 4e-11 43.1 0.6 4.3e-11 43.0 0.6 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|304314302|ref|YP_003849449.1| - 2.2e-10 40.5 0.4 2.9e-10 40.1 0.4 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF4269 PF14091.6 gi|304314302|ref|YP_003849449.1| - 0.048 13.9 0.0 0.054 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4269) DNA_pol_B_palm PF14792.6 gi|304314302|ref|YP_003849449.1| - 0.082 13.1 0.0 0.085 13.1 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm HEPN PF05168.14 gi|304314303|ref|YP_003849450.1| - 2.8e-20 72.6 0.5 3.1e-20 72.5 0.5 1.0 1 0 0 1 1 1 1 HEPN domain Aminotran_1_2 PF00155.21 gi|304314304|ref|YP_003849451.1| - 9.5e-31 107.3 0.0 7.1e-30 104.4 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Zn_dep_PLPC PF00882.18 gi|304314305|ref|YP_003849452.1| - 5.3e-12 46.1 0.2 6.1e-12 45.9 0.2 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C FmdE PF02663.14 gi|304314306|ref|YP_003849453.1| - 3.7e-31 107.9 0.1 3e-19 69.3 0.0 2.7 3 0 0 3 3 3 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DUF4154 PF13689.6 gi|304314306|ref|YP_003849453.1| - 0.18 12.1 0.0 0.46 10.7 0.0 1.6 2 0 0 2 2 2 0 YfiR/HmsC-like Radical_SAM PF04055.21 gi|304314308|ref|YP_003849455.1| - 1.1e-26 94.2 0.3 1.7e-26 93.6 0.3 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|304314308|ref|YP_003849455.1| - 1.1e-07 32.2 0.0 1.8e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|304314308|ref|YP_003849455.1| - 3.7e-05 23.8 0.0 5.7e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2769 PF10967.8 gi|304314309|ref|YP_003849456.1| - 7.6e-08 32.9 9.7 5.3e-06 27.0 10.4 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF2769) zf-C2HCIx2C PF10782.9 gi|304314309|ref|YP_003849456.1| - 1.2 9.2 7.3 0.3 11.0 0.5 2.4 2 1 0 2 2 2 0 Zinc-finger DUF2193 PF09959.9 gi|304314310|ref|YP_003849457.1| - 7.3e-280 928.5 4.4 8.2e-280 928.4 4.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) V-ATPase_G PF03179.15 gi|304314310|ref|YP_003849457.1| - 7.7 7.1 10.3 0.6 10.7 2.5 2.7 3 0 0 3 3 3 0 Vacuolar (H+)-ATPase G subunit DUF2180 PF09947.9 gi|304314311|ref|YP_003849458.1| - 3.8e-36 122.9 4.3 4.1e-36 122.8 4.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.6 gi|304314311|ref|YP_003849458.1| - 0.015 16.1 1.0 0.015 16.1 1.0 1.7 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-UBP_var PF17807.1 gi|304314311|ref|YP_003849458.1| - 0.026 14.3 0.9 0.026 14.3 0.9 1.7 2 0 0 2 2 2 0 Variant UBP zinc finger Prok-RING_1 PF14446.6 gi|304314311|ref|YP_003849458.1| - 1.9 8.5 9.7 3.7 7.6 6.6 2.5 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 MIP PF00230.20 gi|304314312|ref|YP_003849459.1| - 6.5e-51 173.2 17.4 7.4e-51 173.0 17.4 1.0 1 0 0 1 1 1 1 Major intrinsic protein MFS_1 PF07690.16 gi|304314313|ref|YP_003849460.1| - 7.1e-17 61.4 42.7 3.7e-16 59.0 26.3 2.4 1 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|304314313|ref|YP_003849460.1| - 5.2e-05 22.3 13.2 5.2e-05 22.3 13.2 1.9 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|304314313|ref|YP_003849460.1| - 7.5e-05 21.8 10.8 0.0001 21.3 10.8 1.4 1 0 0 1 1 1 1 MFS_1 like family EXS PF03124.14 gi|304314313|ref|YP_003849460.1| - 0.096 12.0 0.9 2.6 7.3 0.1 2.2 1 1 0 2 2 2 0 EXS family MFS_2 PF13347.6 gi|304314313|ref|YP_003849460.1| - 0.77 8.2 22.6 0.0095 14.5 11.5 2.6 2 1 1 3 3 3 0 MFS/sugar transport protein MFS_1 PF07690.16 gi|304314314|ref|YP_003849461.1| - 2.5e-18 66.1 3.6 2.8e-18 66.0 3.6 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|304314314|ref|YP_003849461.1| - 4.9e-10 38.8 0.4 5.4e-10 38.7 0.4 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_5 PF05631.14 gi|304314314|ref|YP_003849461.1| - 0.0025 16.8 0.0 0.0027 16.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-tranasporters, 12 TM MFS_2 PF13347.6 gi|304314314|ref|YP_003849461.1| - 0.0045 15.6 1.0 0.0045 15.6 1.0 1.1 1 0 0 1 1 1 1 MFS/sugar transport protein Glu_synthase PF01645.17 gi|304314315|ref|YP_003849462.1| - 1.6e-132 442.1 2.1 1.6e-132 442.1 2.1 1.9 2 1 0 2 2 1 1 Conserved region in glutamate synthase Fer4 PF00037.27 gi|304314315|ref|YP_003849462.1| - 6.9e-16 57.3 69.2 1.8e-07 30.7 2.3 7.6 8 1 0 8 8 7 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304314315|ref|YP_003849462.1| - 4e-13 49.7 54.4 7.9e-07 29.6 11.4 5.4 3 2 1 4 4 4 4 4Fe-4S dicluster domain FMN_dh PF01070.18 gi|304314315|ref|YP_003849462.1| - 1.7e-12 47.1 7.4 2.3e-12 46.6 4.3 2.4 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Fer4_10 PF13237.6 gi|304314315|ref|YP_003849462.1| - 2.2e-11 43.7 55.3 1.1e-05 25.5 11.9 4.7 4 1 0 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314315|ref|YP_003849462.1| - 3e-11 43.3 57.7 2.1e-05 24.6 10.3 5.8 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304314315|ref|YP_003849462.1| - 2e-10 40.3 67.3 3.2e-05 23.8 0.8 7.1 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|304314315|ref|YP_003849462.1| - 4.3e-10 39.6 60.7 1.7e-05 24.9 11.7 5.7 2 1 4 6 6 6 6 4Fe-4S dicluster domain NMO PF03060.15 gi|304314315|ref|YP_003849462.1| - 1.2e-08 34.7 4.7 2.1e-08 33.9 4.7 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.25 gi|304314315|ref|YP_003849462.1| - 2.9e-07 29.8 5.5 2.9e-07 29.8 5.5 2.1 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4_8 PF13183.6 gi|304314315|ref|YP_003849462.1| - 9.4e-06 26.0 44.4 0.0032 17.9 0.1 5.6 4 2 0 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304314315|ref|YP_003849462.1| - 3e-05 23.9 19.8 0.0007 19.5 2.1 6.7 7 0 0 7 7 6 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304314315|ref|YP_003849462.1| - 0.0002 22.2 51.2 0.056 14.4 3.7 6.8 4 1 2 6 6 6 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|304314315|ref|YP_003849462.1| - 0.00036 21.2 28.5 0.047 14.4 0.4 5.3 4 0 0 4 4 4 3 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|304314315|ref|YP_003849462.1| - 0.0005 20.4 62.7 0.021 15.3 1.2 7.5 7 1 0 7 7 6 4 4Fe-4S binding domain Fer4_18 PF13746.6 gi|304314315|ref|YP_003849462.1| - 0.00091 19.4 8.8 0.00091 19.4 8.8 4.9 2 1 1 4 4 4 1 4Fe-4S dicluster domain DHO_dh PF01180.21 gi|304314315|ref|YP_003849462.1| - 0.0017 17.7 1.9 0.005 16.1 1.9 1.8 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase Fer4_17 PF13534.6 gi|304314315|ref|YP_003849462.1| - 0.002 18.6 46.9 0.55 10.8 0.8 6.4 4 1 1 5 5 5 2 4Fe-4S dicluster domain ThiG PF05690.14 gi|304314315|ref|YP_003849462.1| - 0.0022 17.3 3.1 0.019 14.3 0.7 2.7 3 0 0 3 3 3 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|304314315|ref|YP_003849462.1| - 0.0068 15.9 0.4 0.016 14.6 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein Fer4_3 PF12798.7 gi|304314315|ref|YP_003849462.1| - 0.052 14.5 3.8 0.052 14.5 3.8 7.6 7 1 0 7 7 6 0 4Fe-4S binding domain Glu_syn_central PF04898.14 gi|304314315|ref|YP_003849462.1| - 0.12 11.9 0.5 2 7.8 0.1 2.3 2 0 0 2 2 2 0 Glutamate synthase central domain PcrB PF01884.17 gi|304314315|ref|YP_003849462.1| - 0.3 10.5 3.1 2.8 7.3 1.1 2.4 1 1 2 3 3 3 0 PcrB family ETF_QO PF05187.13 gi|304314315|ref|YP_003849462.1| - 2 8.6 13.8 2.5 8.3 1.2 3.1 2 1 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S GXGXG PF01493.19 gi|304314316|ref|YP_003849463.1| - 1.5e-22 80.1 6.5 2.3e-22 79.5 6.5 1.3 1 0 0 1 1 1 1 GXGXG motif HTH_5 PF01022.20 gi|304314317|ref|YP_003849464.1| - 1.3e-09 37.7 0.3 2e-09 37.2 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|304314317|ref|YP_003849464.1| - 4.1e-08 33.0 0.1 9.3e-08 31.9 0.1 1.6 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|304314317|ref|YP_003849464.1| - 2.5e-06 27.0 0.9 5.6e-06 25.8 0.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|304314317|ref|YP_003849464.1| - 6e-06 26.0 0.2 1.1e-05 25.1 0.2 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|304314317|ref|YP_003849464.1| - 6.7e-06 26.1 0.2 1.5e-05 25.0 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|304314317|ref|YP_003849464.1| - 0.00035 20.4 0.3 0.0017 18.2 0.1 2.2 3 0 0 3 3 3 1 MarR family HTH_45 PF14947.6 gi|304314317|ref|YP_003849464.1| - 0.0006 19.7 0.0 0.001 19.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|304314317|ref|YP_003849464.1| - 0.0011 18.9 0.1 0.0021 18.0 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 gi|304314317|ref|YP_003849464.1| - 0.0072 16.4 0.1 0.017 15.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|304314317|ref|YP_003849464.1| - 0.015 15.2 0.2 0.027 14.4 0.2 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|304314317|ref|YP_003849464.1| - 0.017 15.5 0.1 0.032 14.6 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator FUR PF01475.19 gi|304314317|ref|YP_003849464.1| - 0.029 14.5 0.1 0.073 13.2 0.1 1.6 1 1 0 1 1 1 0 Ferric uptake regulator family DprA_WH PF17782.1 gi|304314317|ref|YP_003849464.1| - 0.031 14.4 0.3 0.05 13.7 0.3 1.3 1 0 0 1 1 1 0 DprA winged helix domain DUF2250 PF10007.9 gi|304314317|ref|YP_003849464.1| - 0.042 13.9 0.2 0.088 12.9 0.2 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.6 gi|304314317|ref|YP_003849464.1| - 0.058 13.4 0.1 0.38 10.8 0.0 2.2 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain Rio2_N PF09202.11 gi|304314317|ref|YP_003849464.1| - 0.062 13.5 0.1 0.13 12.5 0.1 1.5 1 0 0 1 1 1 0 Rio2, N-terminal Dimerisation2 PF16864.5 gi|304314317|ref|YP_003849464.1| - 0.075 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain PadR PF03551.14 gi|304314317|ref|YP_003849464.1| - 0.093 12.7 0.0 1.4 8.9 0.0 2.5 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|304314317|ref|YP_003849464.1| - 0.094 12.6 0.1 0.25 11.2 0.1 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) RP-C PF03428.13 gi|304314317|ref|YP_003849464.1| - 0.1 12.2 0.1 0.2 11.3 0.0 1.5 2 0 0 2 2 2 0 Replication protein C N-terminal domain DUF4423 PF14394.6 gi|304314317|ref|YP_003849464.1| - 0.15 11.8 0.1 0.28 10.9 0.0 1.4 2 0 0 2 2 1 0 Domain of unknown function (DUF4423) HTH_23 PF13384.6 gi|304314317|ref|YP_003849464.1| - 0.15 11.9 0.0 0.34 10.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain AHJR-like PF18743.1 gi|304314319|ref|YP_003849466.1| - 4.6e-06 26.2 0.0 5.4e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 REase_AHJR-like Zn_dep_PLPC PF00882.18 gi|304314320|ref|YP_003849467.1| - 2.7e-10 40.6 0.1 2.9e-10 40.4 0.1 1.1 1 0 0 1 1 1 1 Zinc dependent phospholipase C VIT1 PF01988.19 gi|304314321|ref|YP_003849468.1| - 2.3e-05 24.4 12.0 0.0015 18.4 1.5 2.0 1 1 1 2 2 2 2 VIT family DUF975 PF06161.11 gi|304314321|ref|YP_003849468.1| - 0.038 13.8 5.4 0.046 13.5 5.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF975) Caveolin PF01146.17 gi|304314321|ref|YP_003849468.1| - 0.21 11.5 2.6 0.4 10.6 2.6 1.6 1 1 0 1 1 1 0 Caveolin DUF3810 PF12725.7 gi|304314321|ref|YP_003849468.1| - 1.6 8.0 5.1 2.3 7.5 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) DUF1700 PF08006.11 gi|304314321|ref|YP_003849468.1| - 2.8 7.5 8.5 0.81 9.2 5.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1700) Radical_SAM PF04055.21 gi|304314322|ref|YP_003849469.1| - 9.1e-12 45.7 0.1 2e-11 44.6 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|304314322|ref|YP_003849469.1| - 2.4e-06 28.0 0.4 5.1e-06 26.9 0.4 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|304314322|ref|YP_003849469.1| - 0.052 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|304314322|ref|YP_003849469.1| - 0.083 13.2 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Lar_restr_allev PF14354.6 gi|304314323|ref|YP_003849470.1| - 2.4e-06 27.8 2.2 2.6e-06 27.7 2.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|304314323|ref|YP_003849470.1| - 0.00024 21.2 2.8 0.074 13.2 0.2 2.2 2 0 0 2 2 2 2 Zinc ribbon domain zf-RRN7 PF11781.8 gi|304314323|ref|YP_003849470.1| - 0.0036 16.9 4.2 0.082 12.6 1.0 2.1 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-piccolo PF05715.13 gi|304314323|ref|YP_003849470.1| - 0.0051 16.9 2.2 0.0059 16.7 2.2 1.1 1 0 0 1 1 1 1 Piccolo Zn-finger TF_Zn_Ribbon PF08271.12 gi|304314323|ref|YP_003849470.1| - 0.0056 16.2 6.3 0.034 13.7 6.3 2.0 1 1 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|304314323|ref|YP_003849470.1| - 0.011 15.6 5.0 0.039 13.9 5.0 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-Nse PF11789.8 gi|304314323|ref|YP_003849470.1| - 0.03 14.1 3.1 1.5 8.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of the MIZ type in Nse subunit UPF0547 PF10571.9 gi|304314323|ref|YP_003849470.1| - 0.032 14.3 5.8 0.34 11.0 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prim_Zn_Ribbon PF08273.12 gi|304314323|ref|YP_003849470.1| - 0.076 13.3 7.6 0.21 11.9 7.6 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-C2H2 PF00096.26 gi|304314323|ref|YP_003849470.1| - 0.086 13.3 4.0 2 9.0 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.6 gi|304314323|ref|YP_003849470.1| - 0.097 12.1 5.2 1.6 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|304314323|ref|YP_003849470.1| - 0.19 12.2 4.5 2.7 8.6 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Terminase_GpA PF05876.12 gi|304314323|ref|YP_003849470.1| - 0.19 10.2 1.7 0.2 10.1 1.7 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zinc_ribbon_5 PF13719.6 gi|304314323|ref|YP_003849470.1| - 0.28 11.0 8.2 2.1 8.2 8.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|304314323|ref|YP_003849470.1| - 0.36 10.5 0.2 0.36 10.5 0.2 2.4 2 1 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Nudix_N_2 PF14803.6 gi|304314323|ref|YP_003849470.1| - 0.39 10.7 6.3 1.7 8.6 6.3 1.9 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|304314323|ref|YP_003849470.1| - 0.4 10.6 6.6 3.7 7.6 6.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|304314323|ref|YP_003849470.1| - 1.2 9.0 7.7 51 3.8 7.7 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) SOUL PF04832.12 gi|304314325|ref|YP_003849472.1| - 1.1e-43 149.3 0.0 9.2e-43 146.3 0.0 1.9 1 1 0 1 1 1 1 SOUL heme-binding protein Nitroreductase PF00881.24 gi|304314326|ref|YP_003849473.1| - 4.2e-25 88.7 0.0 5.4e-25 88.4 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|304314326|ref|YP_003849473.1| - 0.00079 19.1 0.1 0.21 11.1 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase PMBR PF09373.10 gi|304314327|ref|YP_003849474.1| - 4.5e-15 55.0 3.2 8.4e-09 35.2 0.5 2.7 2 0 0 2 2 2 2 Pseudomurein-binding repeat DZR PF12773.7 gi|304314328|ref|YP_003849475.1| - 0.0071 16.4 0.9 0.0095 15.9 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|304314328|ref|YP_003849475.1| - 0.013 15.5 0.2 0.015 15.3 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_1 PF14446.6 gi|304314328|ref|YP_003849475.1| - 0.019 14.9 1.8 0.026 14.4 1.8 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.6 gi|304314328|ref|YP_003849475.1| - 0.028 14.3 0.8 0.045 13.6 0.8 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.6 gi|304314328|ref|YP_003849475.1| - 0.035 13.5 4.8 0.067 12.6 4.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|304314328|ref|YP_003849475.1| - 0.053 13.3 2.8 0.094 12.5 2.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_2 PF13639.6 gi|304314328|ref|YP_003849475.1| - 0.059 13.7 1.1 0.097 13.0 1.1 1.4 1 0 0 1 1 1 0 Ring finger domain Zn_Tnp_IS1595 PF12760.7 gi|304314328|ref|YP_003849475.1| - 0.069 13.1 0.9 0.12 12.4 0.9 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-C3HC4_2 PF13923.6 gi|304314328|ref|YP_003849475.1| - 0.074 12.9 2.2 0.11 12.4 2.2 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TFIIS_C PF01096.18 gi|304314328|ref|YP_003849475.1| - 0.3 11.0 2.6 13 5.8 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2175 PF09943.9 gi|304314328|ref|YP_003849475.1| - 1.7 9.0 4.9 62 4.0 4.9 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) HisG PF01634.18 gi|304314329|ref|YP_003849476.1| - 1.2e-38 132.5 0.0 1.6e-38 132.1 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|304314329|ref|YP_003849476.1| - 6e-05 23.1 0.0 0.00011 22.3 0.0 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain Nitroreductase PF00881.24 gi|304314330|ref|YP_003849477.1| - 1.8e-29 102.9 0.0 4.8e-15 56.0 0.0 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|304314330|ref|YP_003849477.1| - 1.3e-12 47.8 0.0 8.8e-05 22.2 0.0 3.1 1 1 1 3 3 3 3 Putative TM nitroreductase zf-ribbon_3 PF13248.6 gi|304314331|ref|YP_003849478.1| - 3.5e-05 23.1 2.5 0.079 12.4 0.2 2.5 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.9 gi|304314331|ref|YP_003849478.1| - 0.0022 18.0 8.0 0.016 15.3 0.3 2.6 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 gi|304314331|ref|YP_003849478.1| - 0.0041 16.6 5.7 0.15 11.6 0.3 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 gi|304314331|ref|YP_003849478.1| - 0.012 15.5 4.2 0.071 13.0 0.7 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.6 gi|304314331|ref|YP_003849478.1| - 0.016 15.2 4.2 0.038 13.9 0.3 2.6 2 1 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|304314331|ref|YP_003849478.1| - 0.036 14.2 6.7 0.76 9.9 0.2 2.4 2 1 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|304314331|ref|YP_003849478.1| - 0.063 13.7 1.7 0.88 10.1 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger double domain Terminase_GpA PF05876.12 gi|304314331|ref|YP_003849478.1| - 0.12 10.9 1.2 0.13 10.7 1.2 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zinc_ribbon_5 PF13719.6 gi|304314331|ref|YP_003849478.1| - 0.18 11.6 6.0 6.5 6.6 6.0 2.7 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|304314331|ref|YP_003849478.1| - 0.24 11.8 6.9 0.46 10.9 6.9 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|304314331|ref|YP_003849478.1| - 0.45 10.3 8.9 2.9 7.7 0.5 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|304314331|ref|YP_003849478.1| - 0.6 9.7 2.9 14 5.4 0.4 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger NUDIX PF00293.28 gi|304314332|ref|YP_003849479.1| - 4.1e-21 75.4 0.1 4.9e-21 75.1 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|304314332|ref|YP_003849479.1| - 4.3e-06 26.7 0.0 6e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain HATPase_c PF02518.26 gi|304314333|ref|YP_003849480.1| - 0.02 15.4 0.0 0.02 15.4 0.0 1.0 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_2 PF07568.12 gi|304314334|ref|YP_003849481.1| - 3.1e-26 91.3 0.5 6.8e-26 90.2 0.5 1.6 1 0 0 1 1 1 1 Histidine kinase HWE_HK PF07536.14 gi|304314334|ref|YP_003849481.1| - 7.1e-06 26.6 0.1 1.6e-05 25.5 0.1 1.7 1 0 0 1 1 1 1 HWE histidine kinase TetR_C_7 PF14246.6 gi|304314334|ref|YP_003849481.1| - 0.022 14.8 0.1 4 7.5 0.0 2.4 2 0 0 2 2 2 0 AefR-like transcriptional repressor, C-terminal domain HATPase_c_2 PF13581.6 gi|304314334|ref|YP_003849481.1| - 0.048 13.6 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain YabA PF06156.13 gi|304314334|ref|YP_003849481.1| - 0.077 13.6 3.1 0.16 12.7 3.1 1.4 1 0 0 1 1 1 0 Initiation control protein YabA B12-binding PF02310.19 gi|304314335|ref|YP_003849482.1| - 3.9e-22 78.6 0.0 9.1e-22 77.4 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|304314335|ref|YP_003849482.1| - 2.3e-12 47.2 0.0 5.8e-12 45.9 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain Phycobilisome PF00502.19 gi|304314335|ref|YP_003849482.1| - 0.0008 19.4 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 Phycobilisome protein TSNR_N PF04705.12 gi|304314335|ref|YP_003849482.1| - 0.04 14.0 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 Thiostrepton-resistance methylase, N terminus HrcA_DNA-bdg PF03444.15 gi|304314337|ref|YP_003849484.1| - 2.8e-38 129.4 1.8 3.5e-38 129.1 0.5 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|304314337|ref|YP_003849484.1| - 3.1e-28 98.0 7.6 5.4e-18 65.2 0.8 2.8 3 0 0 3 3 3 2 CBS domain Rrf2 PF02082.20 gi|304314337|ref|YP_003849484.1| - 1.6e-08 34.7 0.1 4e-08 33.5 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|304314337|ref|YP_003849484.1| - 8.7e-07 28.8 0.1 1.9e-06 27.7 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.6 gi|304314337|ref|YP_003849484.1| - 0.0022 17.7 0.1 0.011 15.5 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|304314337|ref|YP_003849484.1| - 0.032 13.8 0.6 0.36 10.4 0.5 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|304314337|ref|YP_003849484.1| - 0.076 12.9 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|304314337|ref|YP_003849484.1| - 0.14 12.1 0.0 0.46 10.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DS PF01916.17 gi|304314338|ref|YP_003849485.1| - 9.6e-89 297.4 0.0 1.1e-88 297.2 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase alpha-hel2 PF14456.6 gi|304314338|ref|YP_003849485.1| - 0.19 11.0 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Alpha-helical domain 2 OMPdecase PF00215.24 gi|304314340|ref|YP_003849487.1| - 8e-40 136.8 0.0 1.1e-39 136.4 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family CbiM PF01891.16 gi|304314341|ref|YP_003849488.1| - 1.5e-56 191.6 13.7 1.6e-56 191.4 13.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region EBP PF05241.12 gi|304314341|ref|YP_003849488.1| - 0.012 15.1 0.6 0.023 14.2 0.6 1.5 1 0 0 1 1 1 0 Emopamil binding protein CbiN PF02553.15 gi|304314342|ref|YP_003849489.1| - 2e-28 98.1 0.3 2.5e-28 97.8 0.3 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.16 gi|304314343|ref|YP_003849490.1| - 1.1e-60 205.0 9.2 1.4e-60 204.6 9.2 1.1 1 0 0 1 1 1 1 Cobalt transport protein LydB PF16084.5 gi|304314343|ref|YP_003849490.1| - 0.15 11.8 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 LydA-holin antagonist ABC_tran PF00005.27 gi|304314344|ref|YP_003849491.1| - 2.6e-34 118.7 0.0 4.2e-34 118.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|304314344|ref|YP_003849491.1| - 2.2e-15 57.3 0.5 1.4e-10 41.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|304314344|ref|YP_003849491.1| - 1.9e-08 34.0 0.0 1.7e-07 30.9 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|304314344|ref|YP_003849491.1| - 0.0015 18.3 0.1 0.0028 17.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|304314344|ref|YP_003849491.1| - 0.0015 19.1 0.0 0.002 18.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|304314344|ref|YP_003849491.1| - 0.0021 17.8 0.0 0.4 10.4 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_15 PF13175.6 gi|304314344|ref|YP_003849491.1| - 0.0093 15.7 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.6 gi|304314344|ref|YP_003849491.1| - 0.016 13.8 0.0 0.43 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|304314344|ref|YP_003849491.1| - 0.018 14.9 0.0 0.047 13.6 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_25 PF13481.6 gi|304314344|ref|YP_003849491.1| - 0.02 14.4 0.1 0.099 12.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|304314344|ref|YP_003849491.1| - 0.021 15.0 0.0 0.36 11.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|304314344|ref|YP_003849491.1| - 0.033 14.6 0.0 0.052 13.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain RecA PF00154.21 gi|304314344|ref|YP_003849491.1| - 0.084 12.3 0.1 3.8 6.9 0.0 2.2 1 1 1 2 2 2 0 recA bacterial DNA recombination protein AAA_27 PF13514.6 gi|304314344|ref|YP_003849491.1| - 0.14 11.7 0.1 0.28 10.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|304314344|ref|YP_003849491.1| - 0.21 11.3 0.0 0.9 9.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain DMRL_synthase PF00885.19 gi|304314345|ref|YP_003849492.1| - 5.9e-16 58.6 0.1 6.7e-16 58.4 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase FMN_red PF03358.15 gi|304314346|ref|YP_003849493.1| - 6.8e-39 133.1 0.0 8.1e-39 132.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|304314346|ref|YP_003849493.1| - 2.4e-10 40.4 0.0 3.1e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|304314346|ref|YP_003849493.1| - 0.051 13.8 0.0 0.071 13.3 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin domain Glycos_transf_2 PF00535.26 gi|304314347|ref|YP_003849494.1| - 1.1e-37 129.5 0.0 1.3e-37 129.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|304314347|ref|YP_003849494.1| - 7.9e-10 39.0 0.0 1.1e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|304314347|ref|YP_003849494.1| - 2.7e-07 31.0 0.0 4e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|304314347|ref|YP_003849494.1| - 1.1e-06 28.3 0.0 1.5e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|304314347|ref|YP_003849494.1| - 0.00061 20.2 0.0 0.00081 19.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Osmo_MPGsynth PF09488.10 gi|304314347|ref|YP_003849494.1| - 0.00075 18.3 0.0 0.00097 17.9 0.0 1.2 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) HEM4 PF02602.15 gi|304314347|ref|YP_003849494.1| - 0.052 12.9 0.1 0.11 11.9 0.1 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Helicase_C_2 PF13307.6 gi|304314347|ref|YP_003849494.1| - 0.074 13.2 0.0 0.1 12.8 0.0 1.1 1 0 0 1 1 1 0 Helicase C-terminal domain PrpR_N PF06506.11 gi|304314347|ref|YP_003849494.1| - 0.081 12.5 0.0 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 Propionate catabolism activator DUF374 PF04028.13 gi|304314347|ref|YP_003849494.1| - 0.083 12.5 0.0 3.5 7.3 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF374) ALF PF03752.13 gi|304314347|ref|YP_003849494.1| - 0.11 12.5 0.1 0.23 11.5 0.1 1.5 1 0 0 1 1 1 0 Short repeats of unknown function Glyco_transf_4 PF13439.6 gi|304314347|ref|YP_003849494.1| - 0.13 12.2 0.1 0.4 10.7 0.1 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 UvrA_inter PF17760.1 gi|304314347|ref|YP_003849494.1| - 0.14 12.2 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 UvrA interaction domain PGM_PMM_II PF02879.16 gi|304314347|ref|YP_003849494.1| - 0.14 12.8 0.0 15 6.2 0.0 2.5 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Glyco_transf_21 PF13506.6 gi|304314347|ref|YP_003849494.1| - 0.17 11.3 0.1 0.87 9.0 0.0 1.9 1 1 1 2 2 2 0 Glycosyl transferase family 21 Isochorismatase PF00857.20 gi|304314347|ref|YP_003849494.1| - 0.19 11.9 0.0 1.2 9.3 0.0 2.0 2 0 0 2 2 2 0 Isochorismatase family DUF2304 PF10066.9 gi|304314348|ref|YP_003849495.1| - 1e-27 96.4 2.3 1.1e-27 96.3 2.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) DUF4199 PF13858.6 gi|304314348|ref|YP_003849495.1| - 0.048 14.1 5.0 0.06 13.8 5.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) DUF2079 PF09852.9 gi|304314348|ref|YP_003849495.1| - 0.057 12.3 1.5 0.061 12.2 1.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) Glycos_transf_1 PF00534.20 gi|304314349|ref|YP_003849496.1| - 7.2e-37 126.6 0.0 1.6e-36 125.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|304314349|ref|YP_003849496.1| - 2.7e-27 95.8 0.0 7.8e-27 94.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|304314349|ref|YP_003849496.1| - 1.3e-17 64.4 0.0 1.9e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|304314349|ref|YP_003849496.1| - 1.1e-07 32.4 0.0 1.7e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|304314349|ref|YP_003849496.1| - 4.1e-06 27.1 0.0 3.6e-05 24.1 0.0 2.5 3 0 0 3 3 3 1 Glycosyl transferases group 1 CCG PF02754.16 gi|304314350|ref|YP_003849497.1| - 2e-31 108.0 3.1 2.4e-17 62.9 0.1 2.1 2 0 0 2 2 2 2 Cysteine-rich domain LUD_dom PF02589.15 gi|304314351|ref|YP_003849498.1| - 5.4e-39 133.9 0.1 9.3e-39 133.1 0.1 1.4 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|304314351|ref|YP_003849498.1| - 2.9e-12 46.8 1.8 6.6e-12 45.7 1.6 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314351|ref|YP_003849498.1| - 4.7e-09 36.2 3.7 5e-09 36.1 2.4 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314351|ref|YP_003849498.1| - 3.6e-08 33.8 1.5 8.7e-08 32.6 1.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314351|ref|YP_003849498.1| - 5.7e-08 33.2 3.6 1.4e-07 32.0 3.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314351|ref|YP_003849498.1| - 8.3e-08 32.3 1.6 2.7e-07 30.6 1.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|304314351|ref|YP_003849498.1| - 1.5e-07 30.9 14.5 0.0017 18.1 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|304314351|ref|YP_003849498.1| - 2.9e-05 24.2 9.1 0.0033 17.8 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304314351|ref|YP_003849498.1| - 4.8e-05 23.2 11.3 0.015 15.3 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|304314351|ref|YP_003849498.1| - 0.00041 21.1 16.9 0.073 14.0 4.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304314351|ref|YP_003849498.1| - 0.00095 20.1 7.6 0.32 12.0 0.8 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|304314351|ref|YP_003849498.1| - 0.0015 18.5 14.3 0.02 14.9 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304314351|ref|YP_003849498.1| - 0.0015 18.6 12.2 0.054 13.6 12.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|304314351|ref|YP_003849498.1| - 0.0025 18.6 5.3 0.38 11.6 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|304314351|ref|YP_003849498.1| - 0.012 15.7 0.5 6.1 7.1 0.0 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|304314351|ref|YP_003849498.1| - 0.21 11.4 2.1 5.2 6.9 0.1 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.6 gi|304314351|ref|YP_003849498.1| - 2.1 9.2 6.0 9.4 7.1 0.1 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain 4HFCP_synth PF04476.13 gi|304314352|ref|YP_003849499.1| - 6.8e-89 297.5 0.2 7.7e-89 297.3 0.2 1.0 1 0 0 1 1 1 1 4-HFC-P synthase SPOB_a PF14689.6 gi|304314352|ref|YP_003849499.1| - 0.15 11.8 0.0 0.38 10.5 0.0 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Bacteriocin_IIc PF10439.9 gi|304314352|ref|YP_003849499.1| - 0.56 10.4 4.1 16 5.7 0.0 3.5 3 0 0 3 3 3 0 Bacteriocin class II with double-glycine leader peptide IMPDH PF00478.25 gi|304314353|ref|YP_003849500.1| - 1e-149 498.3 7.5 1.2e-149 498.0 7.5 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|304314353|ref|YP_003849500.1| - 2.4e-28 98.4 9.2 9.4e-14 51.6 0.9 3.0 3 0 0 3 3 3 2 CBS domain FMN_dh PF01070.18 gi|304314353|ref|YP_003849500.1| - 6.8e-10 38.5 4.7 7.4e-10 38.4 2.8 2.0 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|304314353|ref|YP_003849500.1| - 9.5e-10 38.4 6.3 1.9e-05 24.2 2.8 2.6 2 1 0 2 2 2 2 Nitronate monooxygenase Glu_synthase PF01645.17 gi|304314353|ref|YP_003849500.1| - 1.3e-06 27.8 3.4 3.5e-06 26.4 3.4 1.7 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|304314353|ref|YP_003849500.1| - 0.00015 21.3 1.6 0.0033 16.9 0.1 2.3 1 1 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|304314353|ref|YP_003849500.1| - 0.0012 18.2 1.7 0.0012 18.2 1.7 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|304314353|ref|YP_003849500.1| - 0.0057 15.8 0.2 0.011 14.9 0.2 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) NeuB PF03102.14 gi|304314353|ref|YP_003849500.1| - 0.056 12.9 0.1 0.65 9.4 0.0 2.6 3 0 0 3 3 3 0 NeuB family EHD_N PF16880.5 gi|304314353|ref|YP_003849500.1| - 0.056 13.3 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 N-terminal EH-domain containing protein H_kinase_N PF12282.8 gi|304314353|ref|YP_003849500.1| - 0.17 11.8 0.3 0.49 10.3 0.1 1.7 1 1 1 2 2 2 0 Signal transduction histidine kinase G3P_antiterm PF04309.12 gi|304314353|ref|YP_003849500.1| - 0.27 10.7 3.5 0.95 8.9 0.1 2.8 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator NTP_transf_3 PF12804.7 gi|304314354|ref|YP_003849501.1| - 3.7e-28 98.9 0.0 4.5e-28 98.6 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain PMBR PF09373.10 gi|304314355|ref|YP_003849502.1| - 2.2e-18 65.4 0.2 8.4e-09 35.2 0.0 2.0 2 0 0 2 2 2 2 Pseudomurein-binding repeat FAM91_N PF14647.6 gi|304314355|ref|YP_003849502.1| - 0.026 13.8 0.1 0.026 13.8 0.1 1.0 1 0 0 1 1 1 0 FAM91 N-terminus Thioredoxin_15 PF18403.1 gi|304314356|ref|YP_003849503.1| - 0.097 12.6 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain Otopetrin PF03189.13 gi|304314356|ref|YP_003849503.1| - 0.35 9.6 1.7 0.48 9.2 1.7 1.1 1 0 0 1 1 1 0 Otopetrin Methyltransf_31 PF13847.6 gi|304314357|ref|YP_003849504.1| - 3.4e-12 46.4 0.0 4.7e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|304314357|ref|YP_003849504.1| - 7.2e-11 42.2 0.1 8.6e-11 42.0 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|304314357|ref|YP_003849504.1| - 1.3e-10 41.8 0.1 2.1e-10 41.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|304314357|ref|YP_003849504.1| - 2.6e-08 33.6 0.0 3.3e-08 33.3 0.0 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 gi|304314357|ref|YP_003849504.1| - 5.6e-08 33.3 0.0 1.1e-07 32.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|304314357|ref|YP_003849504.1| - 9e-08 31.8 0.1 1.7e-07 31.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|304314357|ref|YP_003849504.1| - 1.1e-07 31.8 0.0 1.3e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|304314357|ref|YP_003849504.1| - 1.3e-07 31.4 0.0 4.1e-07 29.8 0.0 1.7 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|304314357|ref|YP_003849504.1| - 3.1e-06 26.7 0.2 8.2e-06 25.3 0.1 1.5 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|304314357|ref|YP_003849504.1| - 4e-06 26.4 0.1 5e-06 26.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.6 gi|304314357|ref|YP_003849504.1| - 4.9e-06 27.5 0.0 9.1e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TrmK PF04816.12 gi|304314357|ref|YP_003849504.1| - 2.4e-05 24.0 0.2 2.8e-05 23.8 0.2 1.1 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase Met_10 PF02475.16 gi|304314357|ref|YP_003849504.1| - 3.6e-05 23.6 0.0 4.8e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.12 gi|304314357|ref|YP_003849504.1| - 4.7e-05 24.1 0.1 8.8e-05 23.2 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|304314357|ref|YP_003849504.1| - 0.00023 20.7 0.0 0.0008 18.9 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase NodS PF05401.11 gi|304314357|ref|YP_003849504.1| - 0.0012 18.5 0.0 0.002 17.8 0.0 1.4 1 1 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|304314357|ref|YP_003849504.1| - 0.0015 17.9 0.0 0.0019 17.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|304314357|ref|YP_003849504.1| - 0.0016 18.3 0.0 0.0044 16.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|304314357|ref|YP_003849504.1| - 0.0021 17.7 0.1 0.0088 15.7 0.0 1.8 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F FtsJ PF01728.19 gi|304314357|ref|YP_003849504.1| - 0.0048 17.0 0.0 0.012 15.7 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase UPF0020 PF01170.18 gi|304314357|ref|YP_003849504.1| - 0.022 14.5 2.5 0.76 9.4 1.4 2.4 2 1 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_3 PF01596.17 gi|304314357|ref|YP_003849504.1| - 0.022 13.9 0.0 0.037 13.2 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase TehB PF03848.14 gi|304314357|ref|YP_003849504.1| - 0.04 13.3 0.0 0.091 12.2 0.0 1.7 1 1 1 2 2 2 0 Tellurite resistance protein TehB PRMT5 PF05185.16 gi|304314357|ref|YP_003849504.1| - 0.04 13.8 0.0 0.13 12.1 0.0 1.8 2 1 0 2 2 2 0 PRMT5 arginine-N-methyltransferase tRNA_U5-meth_tr PF05958.11 gi|304314357|ref|YP_003849504.1| - 0.045 12.7 0.0 0.06 12.3 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase rRNA_methylase PF06962.12 gi|304314357|ref|YP_003849504.1| - 0.055 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Putative rRNA methylase DUF2675 PF11247.8 gi|304314357|ref|YP_003849504.1| - 0.057 13.6 0.0 0.082 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2675) Ank_2 PF12796.7 gi|304314357|ref|YP_003849504.1| - 0.06 13.9 0.0 0.17 12.5 0.0 1.7 2 0 0 2 2 2 0 Ankyrin repeats (3 copies) Methyltransf_32 PF13679.6 gi|304314357|ref|YP_003849504.1| - 0.079 12.9 0.0 0.13 12.3 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Flavoprotein PF02441.19 gi|304314358|ref|YP_003849505.1| - 4.5e-25 88.2 0.0 5.8e-25 87.9 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein HD PF01966.22 gi|304314359|ref|YP_003849506.1| - 7.3e-15 55.3 0.3 1.7e-14 54.1 0.3 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|304314359|ref|YP_003849506.1| - 0.12 11.8 0.1 0.27 10.7 0.0 1.6 2 0 0 2 2 2 0 HDOD domain MoaE PF02391.17 gi|304314360|ref|YP_003849507.1| - 4.7e-23 81.6 0.1 5.8e-23 81.3 0.1 1.1 1 0 0 1 1 1 1 MoaE protein CTP_transf_like PF01467.26 gi|304314361|ref|YP_003849508.1| - 2e-17 63.7 0.0 2.7e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like ABC_tran PF00005.27 gi|304314362|ref|YP_003849509.1| - 6.1e-52 175.8 0.0 1.3e-24 87.3 0.0 2.4 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|304314362|ref|YP_003849509.1| - 3.2e-11 43.6 0.9 0.024 14.4 0.1 4.3 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|304314362|ref|YP_003849509.1| - 8e-08 32.6 1.2 0.036 14.4 0.1 4.3 3 1 0 4 4 4 2 AAA domain AAA_16 PF13191.6 gi|304314362|ref|YP_003849509.1| - 3e-06 27.7 3.9 0.047 14.1 0.4 2.9 2 2 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|304314362|ref|YP_003849509.1| - 3.6e-06 27.6 0.1 0.024 15.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|304314362|ref|YP_003849509.1| - 4.8e-06 26.2 0.2 0.13 12.0 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.19 gi|304314362|ref|YP_003849509.1| - 1.1e-05 25.0 0.2 0.068 12.6 0.0 3.9 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|304314362|ref|YP_003849509.1| - 2.7e-05 24.2 0.1 0.39 10.6 0.0 2.7 3 0 0 3 3 3 2 RsgA GTPase NB-ARC PF00931.22 gi|304314362|ref|YP_003849509.1| - 5.2e-05 22.6 0.2 0.099 11.8 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain TniB PF05621.11 gi|304314362|ref|YP_003849509.1| - 0.00012 21.5 0.2 0.063 12.7 0.0 3.9 4 0 0 4 4 4 1 Bacterial TniB protein AAA_25 PF13481.6 gi|304314362|ref|YP_003849509.1| - 0.00018 21.2 0.1 2.9 7.4 0.0 4.2 4 0 0 4 4 4 1 AAA domain SbcCD_C PF13558.6 gi|304314362|ref|YP_003849509.1| - 0.00022 21.4 0.3 0.05 13.9 0.0 3.6 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|304314362|ref|YP_003849509.1| - 0.00053 20.5 0.4 0.26 11.8 0.0 3.7 4 0 0 4 4 4 1 AAA domain AAA_33 PF13671.6 gi|304314362|ref|YP_003849509.1| - 0.00061 20.0 0.2 0.56 10.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|304314362|ref|YP_003849509.1| - 0.00061 19.6 0.4 0.73 9.5 0.1 2.9 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|304314362|ref|YP_003849509.1| - 0.00092 19.3 0.0 4.5 7.3 0.0 3.3 3 0 0 3 3 3 1 AAA domain ATPase PF06745.13 gi|304314362|ref|YP_003849509.1| - 0.0015 17.9 0.6 0.24 10.7 0.0 3.3 3 0 0 3 3 3 1 KaiC MobB PF03205.14 gi|304314362|ref|YP_003849509.1| - 0.0032 17.4 1.3 0.47 10.3 0.2 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|304314362|ref|YP_003849509.1| - 0.0051 17.1 0.0 2.2 8.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|304314362|ref|YP_003849509.1| - 0.0066 15.8 0.0 2.5 7.3 0.0 3.1 3 0 0 3 3 3 1 Zeta toxin cobW PF02492.19 gi|304314362|ref|YP_003849509.1| - 0.0083 15.7 1.7 1.4 8.4 0.2 2.6 3 0 0 3 3 2 1 CobW/HypB/UreG, nucleotide-binding domain PhoH PF02562.16 gi|304314362|ref|YP_003849509.1| - 0.0086 15.5 0.0 0.68 9.4 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_24 PF13479.6 gi|304314362|ref|YP_003849509.1| - 0.0094 15.7 1.1 6.2 6.5 0.0 3.4 4 0 0 4 4 3 0 AAA domain T2SSE PF00437.20 gi|304314362|ref|YP_003849509.1| - 0.011 14.9 0.1 1.7 7.6 0.0 3.1 3 0 0 3 3 3 0 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|304314362|ref|YP_003849509.1| - 0.011 15.6 0.0 5.6 6.8 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|304314362|ref|YP_003849509.1| - 0.012 15.6 2.7 3.2 7.7 0.2 2.6 2 0 0 2 2 2 0 NACHT domain AAA PF00004.29 gi|304314362|ref|YP_003849509.1| - 0.012 16.0 0.0 14 6.1 0.0 3.8 4 0 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|304314362|ref|YP_003849509.1| - 0.013 15.5 0.0 5.9 6.8 0.0 2.5 2 0 0 2 2 2 0 Rad17 P-loop domain PduV-EutP PF10662.9 gi|304314362|ref|YP_003849509.1| - 0.013 15.3 0.0 6.9 6.4 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_15 PF13175.6 gi|304314362|ref|YP_003849509.1| - 0.018 14.7 0.0 0.96 9.1 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain PRK PF00485.18 gi|304314362|ref|YP_003849509.1| - 0.041 13.6 0.0 4.6 6.9 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family TsaE PF02367.17 gi|304314362|ref|YP_003849509.1| - 0.06 13.3 0.0 5.7 7.0 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MMR_HSR1 PF01926.23 gi|304314362|ref|YP_003849509.1| - 0.079 13.1 0.1 6.7 6.8 0.0 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|304314362|ref|YP_003849509.1| - 0.092 13.1 0.2 26 5.1 0.0 2.9 3 0 0 3 3 3 0 AAA domain DUF87 PF01935.17 gi|304314362|ref|YP_003849509.1| - 0.093 12.8 0.2 0.98 9.5 0.1 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain IstB_IS21 PF01695.17 gi|304314362|ref|YP_003849509.1| - 0.12 12.1 0.0 2.8 7.6 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein Roc PF08477.13 gi|304314362|ref|YP_003849509.1| - 0.12 12.6 0.2 21 5.4 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase DLIC PF05783.11 gi|304314362|ref|YP_003849509.1| - 0.24 10.2 0.0 1.4 7.6 0.0 1.9 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) Flavin_Reduct PF01613.18 gi|304314363|ref|YP_003849510.1| - 2.3e-28 99.2 0.1 2.9e-28 98.9 0.1 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.12 gi|304314363|ref|YP_003849510.1| - 0.03 14.1 0.1 0.055 13.2 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF447) Usp PF00582.26 gi|304314364|ref|YP_003849511.1| - 1e-31 110.3 1.7 1.2e-31 110.1 1.7 1.0 1 0 0 1 1 1 1 Universal stress protein family Oxidored_nitro PF00148.19 gi|304314364|ref|YP_003849511.1| - 0.085 11.6 0.1 0.088 11.5 0.1 1.0 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase DAGK_prokar PF01219.19 gi|304314365|ref|YP_003849512.1| - 0.015 15.1 0.1 0.015 15.1 0.1 1.1 1 0 0 1 1 1 0 Prokaryotic diacylglycerol kinase DUF2976 PF11190.8 gi|304314365|ref|YP_003849512.1| - 0.07 12.9 0.6 0.095 12.5 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) DUF3523 PF12037.8 gi|304314365|ref|YP_003849512.1| - 0.14 11.5 0.0 0.15 11.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3523) Beta_helix PF13229.6 gi|304314366|ref|YP_003849513.1| - 1.2e-16 60.9 73.4 4.1e-08 33.2 24.8 4.1 1 1 2 3 3 3 3 Right handed beta helix region PMBR PF09373.10 gi|304314366|ref|YP_003849513.1| - 1.3e-10 40.9 8.4 8.4e-06 25.7 0.9 3.8 4 0 0 4 4 4 2 Pseudomurein-binding repeat Chlam_PMP PF02415.17 gi|304314366|ref|YP_003849513.1| - 0.018 15.5 90.1 0.14 12.7 0.2 13.8 13 1 0 13 13 13 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat TMPIT PF07851.13 gi|304314366|ref|YP_003849513.1| - 0.021 14.1 8.5 1.5 8.0 0.2 3.2 2 1 1 3 3 3 0 TMPIT-like protein BsuPI PF12690.7 gi|304314366|ref|YP_003849513.1| - 0.053 13.6 0.0 0.2 11.7 0.0 2.0 1 0 0 1 1 1 0 Intracellular proteinase inhibitor Fn3-like PF14310.6 gi|304314366|ref|YP_003849513.1| - 0.13 12.4 0.0 0.4 10.8 0.0 1.8 1 0 0 1 1 1 0 Fibronectin type III-like domain Rubredoxin PF00301.20 gi|304314367|ref|YP_003849514.1| - 5.2e-25 87.2 5.6 5.8e-25 87.1 5.6 1.0 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|304314367|ref|YP_003849514.1| - 4.6e-05 23.4 0.1 5.6e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 PHD-finger Zn-ribbon_8 PF09723.10 gi|304314367|ref|YP_003849514.1| - 0.0014 18.7 3.9 0.011 15.9 3.9 2.0 1 1 0 1 1 1 1 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|304314367|ref|YP_003849514.1| - 0.0057 16.5 2.8 0.098 12.5 0.5 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit HypA PF01155.19 gi|304314367|ref|YP_003849514.1| - 0.0074 16.3 0.2 0.0084 16.1 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Desulfoferrod_N PF06397.12 gi|304314367|ref|YP_003849514.1| - 0.0097 15.5 2.4 0.28 10.9 1.3 2.1 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain TF_Zn_Ribbon PF08271.12 gi|304314367|ref|YP_003849514.1| - 0.014 14.9 1.7 1.6 8.3 0.4 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|304314367|ref|YP_003849514.1| - 0.028 14.1 8.6 0.23 11.2 1.4 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_10 PF10058.9 gi|304314367|ref|YP_003849514.1| - 0.029 14.1 2.4 0.34 10.7 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DZR PF12773.7 gi|304314367|ref|YP_003849514.1| - 0.033 14.2 0.6 0.43 10.6 0.6 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-Sec23_Sec24 PF04810.15 gi|304314367|ref|YP_003849514.1| - 0.035 14.1 0.3 0.81 9.8 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-H2C2_2 PF13465.6 gi|304314367|ref|YP_003849514.1| - 0.044 14.2 3.0 4 8.0 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger double domain HalOD2 PF18547.1 gi|304314367|ref|YP_003849514.1| - 0.051 13.5 0.2 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 Halobacterial output domain 2 OrfB_Zn_ribbon PF07282.11 gi|304314367|ref|YP_003849514.1| - 0.052 13.5 2.2 0.69 9.9 2.1 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain RbpA PF13397.6 gi|304314367|ref|YP_003849514.1| - 0.071 13.7 0.7 0.4 11.3 0.4 1.9 1 1 1 2 2 2 0 RNA polymerase-binding protein Zn_Tnp_IS1595 PF12760.7 gi|304314367|ref|YP_003849514.1| - 0.09 12.8 3.0 1.7 8.7 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|304314367|ref|YP_003849514.1| - 0.13 11.7 0.4 0.13 11.7 0.4 2.1 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|304314367|ref|YP_003849514.1| - 0.16 12.1 0.5 0.67 10.0 0.0 1.8 2 0 0 2 2 2 0 CpXC protein Zn_ribbon_SprT PF17283.2 gi|304314367|ref|YP_003849514.1| - 0.25 11.3 7.4 0.28 11.1 0.2 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain TFIIS_C PF01096.18 gi|304314367|ref|YP_003849514.1| - 0.26 11.2 4.2 3.8 7.4 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.6 gi|304314367|ref|YP_003849514.1| - 0.27 11.0 5.5 0.9 9.3 1.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|304314367|ref|YP_003849514.1| - 0.28 11.0 2.4 4.9 7.0 0.4 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO UPF0547 PF10571.9 gi|304314367|ref|YP_003849514.1| - 0.29 11.2 5.3 2.7 8.2 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|304314367|ref|YP_003849514.1| - 0.32 11.0 5.1 3 7.9 0.3 2.3 2 1 1 3 3 3 0 Nudix N-terminal zf-ISL3 PF14690.6 gi|304314367|ref|YP_003849514.1| - 0.4 11.4 6.1 0.48 11.1 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HIT PF04438.16 gi|304314367|ref|YP_003849514.1| - 0.41 10.5 6.3 8.3 6.4 2.2 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-C2H2 PF00096.26 gi|304314367|ref|YP_003849514.1| - 0.77 10.3 4.0 9.6 6.9 0.6 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Rubredoxin PF00301.20 gi|304314368|ref|YP_003849515.1| - 7.1e-27 93.2 4.6 7.8e-27 93.0 4.6 1.0 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|304314368|ref|YP_003849515.1| - 0.0028 17.7 0.3 0.0044 17.1 0.3 1.3 1 1 0 1 1 1 1 PHD-finger A2L_zn_ribbon PF08792.10 gi|304314368|ref|YP_003849515.1| - 0.0048 16.6 2.2 0.27 11.0 0.3 2.1 2 0 0 2 2 2 1 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|304314368|ref|YP_003849515.1| - 0.0057 16.2 1.9 0.83 9.2 0.2 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding Vps36-NZF-N PF16988.5 gi|304314368|ref|YP_003849515.1| - 0.0085 15.5 0.2 0.19 11.2 0.0 2.1 2 0 0 2 2 2 1 Vacuolar protein sorting 36 NZF-N zinc-finger domain Zn-ribbon_8 PF09723.10 gi|304314368|ref|YP_003849515.1| - 0.0086 16.2 2.4 0.066 13.3 2.4 2.0 1 1 0 1 1 1 1 Zinc ribbon domain zf-Sec23_Sec24 PF04810.15 gi|304314368|ref|YP_003849515.1| - 0.031 14.3 0.1 2.3 8.4 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Prim_Zn_Ribbon PF08273.12 gi|304314368|ref|YP_003849515.1| - 0.046 14.0 3.2 0.22 11.8 0.2 2.3 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-RanBP PF00641.18 gi|304314368|ref|YP_003849515.1| - 0.053 12.8 0.3 0.053 12.8 0.3 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-nanos PF05741.13 gi|304314368|ref|YP_003849515.1| - 0.057 13.6 0.6 7.2 6.9 0.1 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain zinc_ribbon_10 PF10058.9 gi|304314368|ref|YP_003849515.1| - 0.078 12.7 0.6 3.5 7.4 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Rubredoxin_2 PF18073.1 gi|304314368|ref|YP_003849515.1| - 0.085 12.6 6.8 0.7 9.7 0.9 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain ADK_lid PF05191.14 gi|304314368|ref|YP_003849515.1| - 0.12 12.4 2.2 0.54 10.3 2.2 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-piccolo PF05715.13 gi|304314368|ref|YP_003849515.1| - 0.22 11.7 2.8 6.8 6.9 2.8 2.1 1 1 1 2 2 2 0 Piccolo Zn-finger C1_2 PF03107.16 gi|304314368|ref|YP_003849515.1| - 0.35 11.2 2.0 6.7 7.1 0.5 2.1 2 0 0 2 2 2 0 C1 domain Zn_ribbon_SprT PF17283.2 gi|304314368|ref|YP_003849515.1| - 0.52 10.3 3.7 3.6 7.6 0.2 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Nudix_N_2 PF14803.6 gi|304314368|ref|YP_003849515.1| - 0.57 10.2 4.4 3.2 7.7 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-C2H2 PF00096.26 gi|304314368|ref|YP_003849515.1| - 0.62 10.6 2.3 8.4 7.1 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-C2H2_12 PF18112.1 gi|304314368|ref|YP_003849515.1| - 2.4 8.7 7.0 12 6.4 1.7 2.4 2 1 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain Lactamase_B PF00753.27 gi|304314369|ref|YP_003849516.1| - 4.8e-06 26.7 0.0 8.3e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|304314369|ref|YP_003849516.1| - 0.00039 20.0 0.0 0.00068 19.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.25 gi|304314369|ref|YP_003849516.1| - 0.099 12.8 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin Ferritin PF00210.24 gi|304314370|ref|YP_003849517.1| - 4.9e-45 152.9 2.3 5.7e-45 152.7 2.3 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|304314370|ref|YP_003849517.1| - 0.0052 17.2 1.7 0.036 14.5 2.0 1.9 1 1 1 2 2 2 1 Rubrerythrin Acid_phosphat_B PF03767.14 gi|304314370|ref|YP_003849517.1| - 0.0096 15.5 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) AhpC-TSA PF00578.21 gi|304314371|ref|YP_003849518.1| - 1.1e-29 102.8 0.0 1.9e-29 102.1 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|304314371|ref|YP_003849518.1| - 1.2e-10 41.3 0.0 1.6e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|304314371|ref|YP_003849518.1| - 2.8e-10 39.9 0.1 4.6e-10 39.2 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Sod_Fe_C PF02777.18 gi|304314372|ref|YP_003849519.1| - 7.1e-37 125.7 0.4 1.1e-36 125.1 0.4 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|304314372|ref|YP_003849519.1| - 5.8e-31 106.8 0.1 9.9e-31 106.1 0.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain AMP-binding_C_2 PF14535.6 gi|304314373|ref|YP_003849520.1| - 5e-33 113.3 0.4 1.3e-32 112.0 0.4 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|304314373|ref|YP_003849520.1| - 3.8e-13 48.8 0.8 7.3e-13 47.9 0.0 1.7 2 0 0 2 2 2 1 AMP-binding enzyme ACT PF01842.25 gi|304314374|ref|YP_003849521.1| - 4e-16 58.5 0.0 9.9e-08 31.6 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|304314374|ref|YP_003849521.1| - 0.001 19.6 0.0 1.6 9.4 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|304314374|ref|YP_003849521.1| - 0.14 12.1 0.0 1.6 8.8 0.0 2.2 2 0 0 2 2 2 0 ACT domain MarR_2 PF12802.7 gi|304314375|ref|YP_003849522.1| - 2.6e-10 40.0 0.1 8.1e-10 38.5 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|304314375|ref|YP_003849522.1| - 8.4e-10 38.1 0.2 7.3e-09 35.1 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|304314375|ref|YP_003849522.1| - 3.5e-05 23.7 0.0 0.0001 22.2 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|304314375|ref|YP_003849522.1| - 6.8e-05 23.3 0.0 0.00027 21.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|304314375|ref|YP_003849522.1| - 7.3e-05 22.6 0.2 0.00087 19.2 0.0 2.6 3 0 0 3 3 3 1 MarR family HTH_11 PF08279.12 gi|304314375|ref|YP_003849522.1| - 0.00053 19.9 0.0 0.0011 18.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|304314375|ref|YP_003849522.1| - 0.0019 17.8 0.0 0.0039 16.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|304314375|ref|YP_003849522.1| - 0.0095 15.7 0.1 0.023 14.5 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|304314375|ref|YP_003849522.1| - 0.027 14.3 0.0 0.063 13.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|304314375|ref|YP_003849522.1| - 0.037 13.9 0.0 0.075 12.9 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|304314375|ref|YP_003849522.1| - 0.042 14.1 0.0 0.092 13.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|304314375|ref|YP_003849522.1| - 0.058 13.4 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|304314375|ref|YP_003849522.1| - 0.059 13.4 0.0 0.25 11.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Mrr_N PF14338.6 gi|304314375|ref|YP_003849522.1| - 0.078 13.1 0.2 0.3 11.3 0.1 2.0 1 1 1 2 2 2 0 Mrr N-terminal domain Mnd1 PF03962.15 gi|304314375|ref|YP_003849522.1| - 0.097 13.0 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Mnd1 HTH domain DUF4364 PF14277.6 gi|304314375|ref|YP_003849522.1| - 0.21 11.3 0.0 0.38 10.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DHHA1 PF02272.19 gi|304314376|ref|YP_003849523.1| - 3.7e-17 63.0 0.0 2e-16 60.6 0.0 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|304314376|ref|YP_003849523.1| - 0.0011 19.2 0.0 0.0022 18.2 0.0 1.5 1 0 0 1 1 1 1 DHH family SRP19 PF01922.17 gi|304314377|ref|YP_003849524.1| - 1e-25 90.5 0.0 1.2e-25 90.2 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein Ish1 PF10281.9 gi|304314377|ref|YP_003849524.1| - 0.0051 17.1 0.8 0.036 14.4 0.0 2.2 2 1 0 2 2 2 1 Putative stress-responsive nuclear envelope protein DUF3077 PF11275.8 gi|304314377|ref|YP_003849524.1| - 0.064 13.5 0.0 0.097 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3077) HEM4 PF02602.15 gi|304314378|ref|YP_003849525.1| - 5.4e-55 186.3 0.1 6.3e-55 186.0 0.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TP_methylase PF00590.20 gi|304314379|ref|YP_003849526.1| - 5.9e-54 183.2 1.4 6.7e-54 183.0 1.4 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GATase_5 PF13507.6 gi|304314380|ref|YP_003849527.1| - 4.2e-43 147.3 0.0 6e-43 146.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|304314380|ref|YP_003849527.1| - 3.1e-09 36.8 0.0 4.8e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|304314380|ref|YP_003849527.1| - 9.1e-09 35.4 0.0 1.5e-08 34.6 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|304314380|ref|YP_003849527.1| - 7.7e-08 32.2 0.0 7.7e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|304314380|ref|YP_003849527.1| - 2.3e-05 24.3 0.0 3.1e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|304314380|ref|YP_003849527.1| - 0.0051 16.6 0.1 0.011 15.5 0.1 1.6 1 1 0 1 1 1 1 Peptidase C26 PurS PF02700.14 gi|304314381|ref|YP_003849528.1| - 2.5e-25 88.4 0.1 2.8e-25 88.3 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase SAICAR_synt PF01259.18 gi|304314382|ref|YP_003849529.1| - 2.7e-57 194.3 0.0 3.2e-57 194.1 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase TM1506 PF08973.10 gi|304314382|ref|YP_003849529.1| - 0.06 13.0 0.0 0.6 9.8 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1893) SIS PF01380.22 gi|304314383|ref|YP_003849530.1| - 4.4e-55 185.1 0.0 2e-28 98.8 0.7 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|304314383|ref|YP_003849530.1| - 1.2e-24 87.0 0.0 2.2e-24 86.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|304314383|ref|YP_003849530.1| - 1.4e-18 67.0 0.0 2.2e-18 66.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|304314383|ref|YP_003849530.1| - 0.0022 16.9 0.0 0.0039 16.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SBF PF01758.16 gi|304314384|ref|YP_003849531.1| - 6.6e-17 61.8 11.4 6.6e-17 61.8 11.4 2.1 2 1 0 2 2 2 1 Sodium Bile acid symporter family Glyco_trans_1_4 PF13692.6 gi|304314385|ref|YP_003849532.1| - 1.7e-09 38.2 0.0 2.9e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|304314385|ref|YP_003849532.1| - 0.00078 19.0 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|304314385|ref|YP_003849532.1| - 0.02 14.9 0.0 0.054 13.5 0.0 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|304314386|ref|YP_003849533.1| - 6.9e-26 91.1 0.0 4.1e-25 88.6 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|304314386|ref|YP_003849533.1| - 5.2e-11 42.9 0.0 2.9e-10 40.4 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|304314386|ref|YP_003849533.1| - 0.003 18.0 0.0 0.012 16.1 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|304314387|ref|YP_003849534.1| - 6.4e-47 159.3 0.0 9.2e-47 158.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|304314387|ref|YP_003849534.1| - 2.6e-34 118.7 0.2 5e-34 117.7 0.2 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|304314387|ref|YP_003849534.1| - 2.4e-27 96.0 0.0 5.5e-27 94.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|304314387|ref|YP_003849534.1| - 1e-23 84.5 0.1 1.8e-23 83.8 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|304314387|ref|YP_003849534.1| - 1.6e-11 44.4 0.0 2.7e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|304314387|ref|YP_003849534.1| - 2.7e-11 43.7 0.0 6.6e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 DpaA_N PF16924.5 gi|304314387|ref|YP_003849534.1| - 0.12 12.5 0.0 0.46 10.6 0.0 1.9 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain PAS_9 PF13426.7 gi|304314388|ref|YP_003849535.1| - 8.7e-26 90.2 0.0 6.8e-09 35.9 0.0 4.3 4 0 0 4 4 4 3 PAS domain HisKA_2 PF07568.12 gi|304314388|ref|YP_003849535.1| - 2.9e-25 88.1 2.1 8.8e-25 86.6 2.1 1.9 1 0 0 1 1 1 1 Histidine kinase PAS PF00989.25 gi|304314388|ref|YP_003849535.1| - 2.8e-22 78.8 0.0 5.6e-09 36.0 0.0 3.6 3 1 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|304314388|ref|YP_003849535.1| - 5.2e-21 75.0 0.0 7.1e-07 29.5 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|304314388|ref|YP_003849535.1| - 3.6e-18 65.6 0.6 1.4e-14 54.1 0.2 3.1 3 1 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|304314388|ref|YP_003849535.1| - 1.9e-13 50.1 0.1 6.9e-05 22.8 0.0 3.8 3 0 0 3 3 3 2 PAS domain HisKA_7TM PF16927.5 gi|304314388|ref|YP_003849535.1| - 3.4e-12 46.9 24.5 4.9e-12 46.4 24.5 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|304314388|ref|YP_003849535.1| - 3.9e-11 43.4 0.1 1.4e-10 41.7 0.1 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|304314388|ref|YP_003849535.1| - 1.8e-07 31.8 0.2 4.1e-07 30.6 0.2 1.6 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|304314388|ref|YP_003849535.1| - 1.2e-06 28.5 0.0 2.4e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|304314388|ref|YP_003849535.1| - 0.0026 17.9 0.0 1.4 9.1 0.0 3.4 3 0 0 3 3 3 1 PAS fold Methyltransf_30 PF05430.11 gi|304314389|ref|YP_003849536.1| - 1.5e-33 115.4 0.0 3.4e-33 114.2 0.0 1.7 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_25 PF13649.6 gi|304314389|ref|YP_003849536.1| - 5.3e-06 27.0 0.0 0.061 14.0 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.12 gi|304314389|ref|YP_003849536.1| - 1.5e-05 25.6 0.0 0.0002 22.0 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.17 gi|304314389|ref|YP_003849536.1| - 0.00025 20.5 0.0 0.00044 19.7 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_24 PF13578.6 gi|304314389|ref|YP_003849536.1| - 0.0079 17.2 0.0 0.019 16.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|304314389|ref|YP_003849536.1| - 0.19 11.4 0.0 0.68 9.7 0.0 1.8 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TGT PF01702.18 gi|304314390|ref|YP_003849537.1| - 4.7e-78 262.8 0.0 6.6e-78 262.3 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.6 gi|304314390|ref|YP_003849537.1| - 3.8e-30 103.8 0.0 1.1e-29 102.3 0.0 1.9 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|304314390|ref|YP_003849537.1| - 1e-16 60.7 0.1 2.2e-16 59.6 0.1 1.6 1 0 0 1 1 1 1 PUA domain DUF5591 PF17884.1 gi|304314390|ref|YP_003849537.1| - 4.5e-05 23.4 0.0 0.00012 22.0 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF5591) UPF0113 PF03657.13 gi|304314390|ref|YP_003849537.1| - 0.11 12.8 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 UPF0113 PUA domain NAC PF01849.18 gi|304314391|ref|YP_003849538.1| - 3e-17 62.3 5.7 6.6e-17 61.2 4.7 1.8 2 0 0 2 2 2 1 NAC domain UBA_4 PF14555.6 gi|304314391|ref|YP_003849538.1| - 0.0014 18.4 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 UBA-like domain SPT6_acidic PF14632.6 gi|304314391|ref|YP_003849538.1| - 0.079 13.6 0.9 0.15 12.7 0.2 1.8 1 1 1 2 2 2 0 Acidic N-terminal SPT6 Metallophos PF00149.28 gi|304314392|ref|YP_003849539.1| - 1.8e-18 67.8 1.1 2.4e-18 67.4 1.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|304314392|ref|YP_003849539.1| - 3.2e-14 53.4 1.4 6e-14 52.6 1.4 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PGA_cap PF09587.10 gi|304314392|ref|YP_003849539.1| - 0.023 14.2 0.4 0.037 13.5 0.3 1.5 1 1 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap MutL PF13941.6 gi|304314392|ref|YP_003849539.1| - 0.056 12.0 0.0 0.072 11.7 0.0 1.1 1 0 0 1 1 1 0 MutL protein Metallophos_3 PF14582.6 gi|304314392|ref|YP_003849539.1| - 0.067 12.5 0.3 2.5 7.4 0.0 2.7 2 1 1 3 3 3 0 Metallophosphoesterase, calcineurin superfamily RNase_Zc3h12a PF11977.8 gi|304314393|ref|YP_003849540.1| - 1.5e-27 96.3 0.2 2.2e-27 95.7 0.2 1.3 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain PRORP PF16953.5 gi|304314393|ref|YP_003849540.1| - 0.00052 19.6 0.0 0.00087 18.9 0.0 1.4 1 0 0 1 1 1 1 Protein-only RNase P Proho_convert PF12177.8 gi|304314393|ref|YP_003849540.1| - 0.17 11.9 0.7 0.37 10.8 0.7 1.5 1 0 0 1 1 1 0 Prohormone convertase enzyme PhoR PF11808.8 gi|304314394|ref|YP_003849541.1| - 0.3 11.5 3.9 0.56 10.7 3.9 1.4 1 0 0 1 1 1 0 Phosphate regulon sensor protein PhoR ArgJ PF01960.18 gi|304314396|ref|YP_003849543.1| - 9.7e-137 455.7 5.7 1.2e-136 455.4 5.7 1.0 1 0 0 1 1 1 1 ArgJ family BPS PF08947.10 gi|304314396|ref|YP_003849543.1| - 0.057 13.2 0.1 0.15 11.9 0.1 1.7 1 0 0 1 1 1 0 BPS (Between PH and SH2) AA_kinase PF00696.28 gi|304314397|ref|YP_003849544.1| - 8.5e-48 163.0 1.9 9.8e-48 162.8 1.9 1.0 1 0 0 1 1 1 1 Amino acid kinase family Iso_dh PF00180.20 gi|304314398|ref|YP_003849545.1| - 1.7e-105 353.1 0.0 2e-105 352.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Antirestrict PF03230.13 gi|304314398|ref|YP_003849545.1| - 0.02 14.9 0.1 0.085 12.9 0.0 1.9 2 0 0 2 2 2 0 Antirestriction protein TPR_12 PF13424.6 gi|304314399|ref|YP_003849546.1| - 1.2e-12 47.9 3.2 0.00029 21.1 0.3 4.0 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|304314399|ref|YP_003849546.1| - 1.9e-09 36.9 7.5 0.0023 17.9 0.0 4.8 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|304314399|ref|YP_003849546.1| - 1.8e-08 33.8 4.2 0.033 14.2 0.0 4.8 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|304314399|ref|YP_003849546.1| - 1.9e-08 33.8 4.9 0.0032 17.2 0.0 4.3 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|304314399|ref|YP_003849546.1| - 1.1e-07 31.5 0.2 0.00037 20.2 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|304314399|ref|YP_003849546.1| - 1.6e-06 28.5 0.7 0.67 10.9 0.0 4.2 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|304314399|ref|YP_003849546.1| - 3.5e-06 26.8 3.3 0.033 14.4 0.0 4.1 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|304314399|ref|YP_003849546.1| - 0.00014 22.3 0.3 0.51 10.9 0.0 3.7 3 1 0 4 4 4 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|304314399|ref|YP_003849546.1| - 0.00058 19.5 0.2 1 9.1 0.1 3.8 3 1 0 3 3 3 1 TPR repeat TPR_MalT PF17874.1 gi|304314399|ref|YP_003849546.1| - 0.00079 18.9 0.0 0.011 15.1 0.0 2.0 2 0 0 2 2 2 1 MalT-like TPR region TPR_16 PF13432.6 gi|304314399|ref|YP_003849546.1| - 0.00083 20.0 0.1 0.009 16.6 0.0 2.5 2 1 1 3 3 3 2 Tetratricopeptide repeat SRP68 PF16969.5 gi|304314399|ref|YP_003849546.1| - 0.003 16.7 0.2 0.0054 15.8 0.2 1.4 1 0 0 1 1 1 1 RNA-binding signal recognition particle 68 TPR_6 PF13174.6 gi|304314399|ref|YP_003849546.1| - 0.01 16.4 0.1 5.6 7.8 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat Lip_prot_lig_C PF10437.9 gi|304314399|ref|YP_003849546.1| - 0.03 14.3 0.3 26 4.9 0.0 3.2 2 1 1 3 3 3 0 Bacterial lipoate protein ligase C-terminus SNAP PF14938.6 gi|304314399|ref|YP_003849546.1| - 0.051 13.0 0.1 0.15 11.4 0.1 1.9 2 1 0 2 2 2 0 Soluble NSF attachment protein, SNAP TPR_21 PF09976.9 gi|304314399|ref|YP_003849546.1| - 0.09 12.5 0.1 0.37 10.5 0.1 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat-like domain TPR_9 PF13371.6 gi|304314399|ref|YP_003849546.1| - 0.11 12.6 0.1 5.5 7.2 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat HEAT_2 PF13646.6 gi|304314400|ref|YP_003849547.1| - 2.4e-48 162.4 12.0 3.6e-18 65.7 2.0 2.5 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.16 gi|304314400|ref|YP_003849547.1| - 8.7e-29 97.3 9.7 3e-08 33.6 0.3 5.5 5 1 0 5 5 5 5 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|304314400|ref|YP_003849547.1| - 5.5e-18 63.5 0.1 0.0027 17.8 0.0 5.2 5 0 0 5 5 5 4 HEAT repeat HEAT_EZ PF13513.6 gi|304314400|ref|YP_003849547.1| - 2.2e-15 56.8 2.2 0.0049 17.3 0.0 5.2 4 1 1 5 5 5 3 HEAT-like repeat Arm PF00514.23 gi|304314400|ref|YP_003849547.1| - 1.1e-08 34.8 0.2 0.2 11.8 0.0 4.9 2 1 3 5 5 5 2 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|304314400|ref|YP_003849547.1| - 4.3e-07 30.1 0.0 0.25 11.4 0.0 3.7 1 1 2 3 3 3 3 non-SMC mitotic condensation complex subunit 1 GUN4_N PF16416.5 gi|304314400|ref|YP_003849547.1| - 7.3e-07 29.1 0.0 0.017 15.1 0.1 2.6 2 1 1 3 3 3 2 ARM-like repeat domain, GUN4-N terminal Aconitase_B_N PF11791.8 gi|304314400|ref|YP_003849547.1| - 2.8e-06 27.5 0.1 0.3 11.1 0.1 4.2 1 1 3 4 4 4 2 Aconitate B N-terminal domain TPR_20 PF14561.6 gi|304314400|ref|YP_003849547.1| - 0.0056 17.0 3.3 21 5.6 0.0 4.5 1 1 4 5 5 5 0 Tetratricopeptide repeat Adaptin_N PF01602.20 gi|304314400|ref|YP_003849547.1| - 0.018 13.7 0.0 0.28 9.7 0.0 2.5 1 1 1 2 2 2 0 Adaptin N terminal region IFRD PF05004.13 gi|304314400|ref|YP_003849547.1| - 0.063 12.4 0.2 3.9 6.5 0.0 2.8 1 1 1 2 2 2 0 Interferon-related developmental regulator (IFRD) DUF4806 PF16064.5 gi|304314400|ref|YP_003849547.1| - 0.081 13.2 0.1 0.7 10.2 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4806) RTP1_C1 PF10363.9 gi|304314400|ref|YP_003849547.1| - 0.087 13.0 0.0 24 5.2 0.0 3.0 1 1 1 3 3 3 0 Required for nuclear transport of RNA pol II C-terminus 1 DUF5397 PF17375.2 gi|304314400|ref|YP_003849547.1| - 0.22 11.2 0.8 1.4 8.7 0.5 2.5 2 1 0 2 2 2 0 Family of unknown function (DUF5397) MgtE_N PF03448.17 gi|304314400|ref|YP_003849547.1| - 0.39 11.3 7.0 7.4 7.2 1.7 3.2 2 2 0 2 2 2 0 MgtE intracellular N domain Ldh_1_N PF00056.23 gi|304314401|ref|YP_003849548.1| - 6.3e-34 117.1 0.2 9.4e-34 116.5 0.2 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|304314401|ref|YP_003849548.1| - 1.7e-24 86.6 0.0 2.4e-24 86.1 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Semialdhyde_dh PF01118.24 gi|304314401|ref|YP_003849548.1| - 2.7e-06 27.8 0.1 6.8e-06 26.5 0.1 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|304314401|ref|YP_003849548.1| - 0.00055 20.0 0.2 0.001 19.2 0.2 1.6 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus KR PF08659.10 gi|304314401|ref|YP_003849548.1| - 0.0017 18.3 0.4 0.0028 17.6 0.4 1.3 1 0 0 1 1 1 1 KR domain Glyco_hydro_4 PF02056.16 gi|304314401|ref|YP_003849548.1| - 0.009 15.6 0.0 0.032 13.8 0.0 1.8 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase PK_C PF02887.16 gi|304314401|ref|YP_003849548.1| - 0.011 16.0 0.2 0.73 10.1 0.0 3.1 4 0 0 4 4 4 0 Pyruvate kinase, alpha/beta domain Glyco_hydro_4C PF11975.8 gi|304314401|ref|YP_003849548.1| - 0.015 15.4 0.0 0.024 14.7 0.0 1.4 1 1 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain Gal_mutarotas_2 PF13802.6 gi|304314401|ref|YP_003849548.1| - 0.02 15.2 0.0 0.042 14.2 0.0 1.5 1 0 0 1 1 1 0 Galactose mutarotase-like SNO PF01174.19 gi|304314402|ref|YP_003849549.1| - 7.4e-49 166.1 0.2 8.7e-49 165.9 0.2 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.28 gi|304314402|ref|YP_003849549.1| - 3.5e-06 26.9 0.0 5.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|304314402|ref|YP_003849549.1| - 3e-05 23.7 0.1 5.6e-05 22.8 0.2 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|304314402|ref|YP_003849549.1| - 0.00062 19.5 0.0 0.00092 18.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 Fimbrial_K88 PF02432.15 gi|304314402|ref|YP_003849549.1| - 0.039 13.9 0.2 0.055 13.4 0.2 1.3 1 0 0 1 1 1 0 Fimbrial, major and minor subunit UPF0180 PF03698.13 gi|304314402|ref|YP_003849549.1| - 0.059 13.5 0.2 0.11 12.7 0.2 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) GATase_6 PF13522.6 gi|304314403|ref|YP_003849550.1| - 8.9e-18 64.8 0.0 1.3e-17 64.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|304314403|ref|YP_003849550.1| - 1.8e-16 60.2 0.0 2.8e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|304314403|ref|YP_003849550.1| - 0.00039 19.3 1.7 1.2 7.8 0.0 3.1 2 1 1 3 3 3 3 Glutamine amidotransferases class-II Fra10Ac1 PF09725.9 gi|304314403|ref|YP_003849550.1| - 0.0017 18.5 0.0 0.0026 17.8 0.0 1.2 1 0 0 1 1 1 1 Folate-sensitive fragile site protein Fra10Ac1 GATase_4 PF13230.6 gi|304314403|ref|YP_003849550.1| - 0.0071 15.3 0.0 0.0098 14.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF493 PF04359.14 gi|304314403|ref|YP_003849550.1| - 0.022 15.3 0.0 0.049 14.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF493) GXGXG PF01493.19 gi|304314404|ref|YP_003849551.1| - 3.7e-28 98.4 8.8 4.5e-28 98.2 8.8 1.1 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.13 gi|304314405|ref|YP_003849552.1| - 4e-41 140.4 0.0 4e-41 140.4 0.0 1.5 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|304314405|ref|YP_003849552.1| - 1.3e-25 89.3 0.0 2.5e-25 88.4 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.6 gi|304314405|ref|YP_003849552.1| - 1.4e-05 25.5 2.5 0.0029 18.0 0.1 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314405|ref|YP_003849552.1| - 9.3e-05 22.5 10.9 9.3e-05 22.5 10.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|304314405|ref|YP_003849552.1| - 0.00039 20.1 5.2 0.00039 20.1 5.2 3.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304314405|ref|YP_003849552.1| - 0.00062 19.7 3.7 0.00062 19.7 3.7 3.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304314405|ref|YP_003849552.1| - 0.0017 18.4 14.9 0.0021 18.1 12.4 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314405|ref|YP_003849552.1| - 0.0037 17.8 7.8 0.0078 16.7 0.2 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314405|ref|YP_003849552.1| - 0.016 15.3 8.9 0.016 15.3 8.9 2.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314405|ref|YP_003849552.1| - 0.017 15.7 16.9 0.14 12.8 13.3 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304314405|ref|YP_003849552.1| - 0.021 15.3 3.0 0.021 15.3 3.0 3.4 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304314405|ref|YP_003849552.1| - 0.024 14.7 3.3 0.024 14.7 3.3 3.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|304314405|ref|YP_003849552.1| - 0.63 10.6 7.0 7.8 7.1 0.2 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|304314405|ref|YP_003849552.1| - 0.9 10.5 15.2 0.92 10.5 3.1 3.1 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Glu_synthase PF01645.17 gi|304314406|ref|YP_003849553.1| - 1.6e-136 455.3 5.4 5e-136 453.6 5.4 1.7 1 1 0 1 1 1 1 Conserved region in glutamate synthase NMO PF03060.15 gi|304314406|ref|YP_003849553.1| - 4.2e-14 52.7 3.1 7.6e-14 51.8 3.1 1.5 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|304314406|ref|YP_003849553.1| - 4e-13 49.1 18.5 6.3e-11 41.9 15.5 3.0 2 1 0 2 2 2 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|304314406|ref|YP_003849553.1| - 1.4e-08 34.1 7.0 1.4e-08 34.1 7.0 2.7 4 0 0 4 4 4 1 IMP dehydrogenase / GMP reductase domain Fer4_21 PF14697.6 gi|304314406|ref|YP_003849553.1| - 9.3e-08 32.1 10.2 9.3e-08 32.1 10.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|304314406|ref|YP_003849553.1| - 2.2e-07 30.4 11.9 2e-06 27.4 3.1 3.5 3 0 0 3 3 2 2 4Fe-4S binding domain Glu_syn_central PF04898.14 gi|304314406|ref|YP_003849553.1| - 2.3e-07 30.6 1.0 0.00011 21.9 0.1 2.2 2 0 0 2 2 2 2 Glutamate synthase central domain Fer4_9 PF13187.6 gi|304314406|ref|YP_003849553.1| - 4.4e-07 30.0 22.8 2.9e-06 27.3 11.2 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314406|ref|YP_003849553.1| - 2.7e-05 25.0 11.8 0.00072 20.4 0.9 3.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|304314406|ref|YP_003849553.1| - 6.8e-05 23.4 1.2 6.8e-05 23.4 1.2 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain His_biosynth PF00977.21 gi|304314406|ref|YP_003849553.1| - 0.001 18.6 0.5 0.0021 17.5 0.3 1.6 1 1 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|304314406|ref|YP_003849553.1| - 0.0021 17.3 0.7 0.0021 17.3 0.7 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Fer4_10 PF13237.6 gi|304314406|ref|YP_003849553.1| - 0.0026 17.8 12.5 0.0026 17.8 12.5 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304314406|ref|YP_003849553.1| - 0.0031 17.5 3.2 0.0031 17.5 3.2 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain QRPTase_C PF01729.19 gi|304314406|ref|YP_003849553.1| - 0.039 13.7 0.1 0.092 12.5 0.1 1.6 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Fer4_17 PF13534.6 gi|304314406|ref|YP_003849553.1| - 0.068 13.7 0.7 0.068 13.7 0.7 3.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304314406|ref|YP_003849553.1| - 0.078 13.4 0.8 0.078 13.4 0.8 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain PRAI PF00697.22 gi|304314406|ref|YP_003849553.1| - 0.11 12.2 0.1 0.25 11.1 0.0 1.5 2 0 0 2 2 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ETF_QO PF05187.13 gi|304314406|ref|YP_003849553.1| - 0.15 12.2 5.5 0.38 10.9 5.5 1.6 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_2 PF12797.7 gi|304314406|ref|YP_003849553.1| - 0.24 11.6 26.6 0.15 12.2 4.5 3.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|304314406|ref|YP_003849553.1| - 2 9.1 22.3 0.51 11.0 1.8 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain PcrB PF01884.17 gi|304314406|ref|YP_003849553.1| - 2.7 7.4 5.1 1.9 7.9 1.1 2.4 1 1 1 2 2 2 0 PcrB family MFS_1 PF07690.16 gi|304314407|ref|YP_003849554.1| - 2.3e-46 158.4 63.4 2.7e-35 122.0 35.4 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|304314407|ref|YP_003849554.1| - 1.2e-06 27.7 17.8 1.2e-06 27.7 17.8 3.5 3 1 0 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|304314407|ref|YP_003849554.1| - 0.00024 19.7 8.1 0.00024 19.7 8.1 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1 PF07690.16 gi|304314408|ref|YP_003849555.1| - 2.7e-49 168.0 40.9 2.7e-49 168.0 40.9 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|304314408|ref|YP_003849555.1| - 9.6e-08 31.3 14.1 9.6e-08 31.3 14.1 3.2 2 1 1 3 3 3 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|304314408|ref|YP_003849555.1| - 0.00011 21.2 21.1 0.0048 15.8 8.7 2.7 3 1 0 3 3 3 2 MFS_1 like family zf-CDGSH PF09360.10 gi|304314409|ref|YP_003849556.1| - 7.9e-41 138.1 1.1 6e-20 71.2 0.1 2.6 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.11 gi|304314409|ref|YP_003849556.1| - 2.6e-09 37.0 0.0 1.2e-08 34.9 0.0 2.1 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster Spore_YtfJ PF09579.10 gi|304314410|ref|YP_003849557.1| - 0.048 13.8 0.1 0.13 12.5 0.1 1.7 1 0 0 1 1 1 0 Sporulation protein YtfJ (Spore_YtfJ) BtrH_N PF14399.6 gi|304314410|ref|YP_003849557.1| - 0.093 13.0 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 Butirosin biosynthesis protein H, N-terminal Gly-zipper_YMGG PF13441.6 gi|304314410|ref|YP_003849557.1| - 0.11 12.3 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 YMGG-like Gly-zipper HEM4 PF02602.15 gi|304314410|ref|YP_003849557.1| - 0.14 11.4 0.1 0.17 11.2 0.1 1.1 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD CbiM PF01891.16 gi|304314411|ref|YP_003849558.1| - 7.2e-40 137.0 23.1 8.1e-40 136.9 23.1 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|304314411|ref|YP_003849558.1| - 0.00074 19.7 28.1 0.00074 19.7 28.1 1.7 2 0 0 2 2 2 1 ECF transporter, substrate-specific component Presenilin PF01080.17 gi|304314412|ref|YP_003849559.1| - 0.042 12.6 0.2 0.044 12.6 0.2 1.1 1 0 0 1 1 1 0 Presenilin Zip PF02535.22 gi|304314412|ref|YP_003849559.1| - 0.11 11.7 0.4 0.12 11.5 0.4 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter SSP160 PF06933.11 gi|304314412|ref|YP_003849559.1| - 0.21 9.7 9.7 0.24 9.6 9.7 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF908 PF06012.12 gi|304314412|ref|YP_003849559.1| - 0.52 9.7 7.0 0.6 9.5 7.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF908) CCSAP PF15748.5 gi|304314412|ref|YP_003849559.1| - 1.1 9.3 10.0 1.5 8.9 10.0 1.1 1 0 0 1 1 1 0 Centriole, cilia and spindle-associated DUF4614 PF15391.6 gi|304314412|ref|YP_003849559.1| - 5.9 6.9 13.8 8 6.4 13.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4614) Macoilin PF09726.9 gi|304314412|ref|YP_003849559.1| - 6.8 5.1 9.3 7.8 4.9 9.3 1.0 1 0 0 1 1 1 0 Macoilin family DEAD PF00270.29 gi|304314413|ref|YP_003849560.1| - 5.8e-50 169.5 0.0 4.2e-49 166.7 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|304314413|ref|YP_003849560.1| - 1e-31 109.5 0.1 3.1e-30 104.8 0.1 2.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|304314413|ref|YP_003849560.1| - 0.0002 21.4 0.0 0.00077 19.5 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UTP25 PF06862.12 gi|304314413|ref|YP_003849560.1| - 0.02 13.7 0.9 0.45 9.2 0.1 2.5 2 1 0 3 3 3 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 ERCC3_RAD25_C PF16203.5 gi|304314413|ref|YP_003849560.1| - 0.031 13.5 0.0 0.07 12.3 0.0 1.6 2 0 0 2 2 2 0 ERCC3/RAD25/XPB C-terminal helicase AAA_22 PF13401.6 gi|304314413|ref|YP_003849560.1| - 0.12 12.6 0.1 0.84 9.9 0.0 2.5 3 1 0 3 3 3 0 AAA domain 5-FTHF_cyc-lig PF01812.20 gi|304314414|ref|YP_003849561.1| - 2.5e-36 125.3 0.0 2.9e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family RDD PF06271.12 gi|304314415|ref|YP_003849562.1| - 1.5e-14 54.4 6.5 1.9e-14 54.0 6.5 1.1 1 0 0 1 1 1 1 RDD family DUF2427 PF10348.9 gi|304314415|ref|YP_003849562.1| - 0.046 13.5 2.9 0.093 12.5 1.9 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF2427) AIRS_C PF02769.22 gi|304314416|ref|YP_003849563.1| - 2.1e-31 109.2 1.1 3e-31 108.6 1.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|304314416|ref|YP_003849563.1| - 2.4e-18 66.5 0.4 5.7e-18 65.4 0.4 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Ribosomal_S8e PF01201.22 gi|304314417|ref|YP_003849564.1| - 3.1e-37 127.8 3.4 3.6e-37 127.6 3.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e BRK PF07533.16 gi|304314417|ref|YP_003849564.1| - 0.2 11.3 0.5 0.46 10.1 0.0 1.9 2 0 0 2 2 2 0 BRK domain DNA_pol_B PF00136.21 gi|304314418|ref|YP_003849565.1| - 2.3e-25 89.2 0.0 2.8e-25 89.0 0.0 1.0 1 0 0 1 1 1 1 DNA polymerase family B Profilin PF00235.19 gi|304314418|ref|YP_003849565.1| - 0.083 13.2 0.0 0.13 12.6 0.0 1.3 1 0 0 1 1 1 0 Profilin HAD_2 PF13419.6 gi|304314419|ref|YP_003849566.1| - 4.7e-31 108.2 0.0 7e-31 107.7 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|304314419|ref|YP_003849566.1| - 8.5e-17 62.1 0.0 5e-15 56.3 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|304314419|ref|YP_003849566.1| - 3.9e-13 49.2 0.0 6.1e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|304314419|ref|YP_003849566.1| - 1.4e-06 28.9 0.0 1.8e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|304314419|ref|YP_003849566.1| - 0.012 15.7 0.0 0.45 10.6 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Radical_SAM PF04055.21 gi|304314419|ref|YP_003849566.1| - 0.023 15.1 0.0 0.085 13.2 0.0 1.9 1 1 0 1 1 1 0 Radical SAM superfamily Acid_phosphat_B PF03767.14 gi|304314419|ref|YP_003849566.1| - 0.043 13.4 0.0 0.087 12.4 0.0 1.5 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Mg_chelatase PF01078.21 gi|304314420|ref|YP_003849567.1| - 1.4e-05 24.6 0.0 0.00047 19.6 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|304314420|ref|YP_003849567.1| - 0.0049 17.3 0.0 0.042 14.3 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|304314420|ref|YP_003849567.1| - 0.007 15.7 1.0 0.61 9.3 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.14 gi|304314420|ref|YP_003849567.1| - 0.014 15.4 0.0 1.1 9.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|304314420|ref|YP_003849567.1| - 0.045 14.1 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|304314420|ref|YP_003849567.1| - 0.079 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Exo_endo_phos PF03372.23 gi|304314422|ref|YP_003849569.1| - 6.1e-27 94.6 0.2 7e-27 94.5 0.2 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|304314422|ref|YP_003849569.1| - 1.4e-06 28.2 0.0 5e-06 26.4 0.0 1.8 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase LisH PF08513.11 gi|304314422|ref|YP_003849569.1| - 0.084 12.9 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 LisH FeoB_N PF02421.18 gi|304314423|ref|YP_003849570.1| - 3.5e-64 215.1 0.5 5.1e-64 214.5 0.5 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|304314423|ref|YP_003849570.1| - 4.3e-24 84.9 18.0 5.7e-12 45.9 6.0 2.9 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|304314423|ref|YP_003849570.1| - 3e-19 69.2 0.0 5.3e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|304314423|ref|YP_003849570.1| - 3.4e-17 62.8 0.0 2.4e-15 56.9 0.0 2.3 1 1 1 2 2 2 1 FeoB cytosolic helical domain FeoB_C PF07664.12 gi|304314423|ref|YP_003849570.1| - 2.7e-12 46.2 0.4 2.7e-12 46.2 0.4 2.8 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus RsgA_GTPase PF03193.16 gi|304314423|ref|YP_003849570.1| - 3.4e-05 23.8 0.2 0.28 11.1 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|304314423|ref|YP_003849570.1| - 6.3e-05 22.6 0.1 0.00028 20.5 0.1 2.0 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.17 gi|304314423|ref|YP_003849570.1| - 0.00055 19.8 0.0 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AIG1 PF04548.16 gi|304314423|ref|YP_003849570.1| - 0.00082 18.8 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 AIG1 family SRPRB PF09439.10 gi|304314423|ref|YP_003849570.1| - 0.00091 18.7 0.0 0.0015 18.0 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|304314423|ref|YP_003849570.1| - 0.093 12.8 0.4 4.1 7.4 0.0 2.3 2 0 0 2 2 2 0 Dynamin family Apolipoprotein PF01442.18 gi|304314423|ref|YP_003849570.1| - 0.18 11.7 0.1 0.32 10.9 0.1 1.3 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Fe_dep_repr_C PF02742.15 gi|304314424|ref|YP_003849571.1| - 8.5e-29 99.4 0.6 2.3e-28 98.1 0.2 1.9 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|304314424|ref|YP_003849571.1| - 4.9e-27 93.9 1.0 9.3e-27 93.0 1.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|304314424|ref|YP_003849571.1| - 1.3e-20 73.4 0.2 4.6e-20 71.7 0.3 1.9 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.7 gi|304314424|ref|YP_003849571.1| - 2.4e-05 24.1 0.0 8.7e-05 22.3 0.0 2.0 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|304314424|ref|YP_003849571.1| - 9.3e-05 22.3 0.1 0.00029 20.7 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|304314424|ref|YP_003849571.1| - 0.00021 20.8 0.3 0.0016 18.0 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|304314424|ref|YP_003849571.1| - 0.00027 20.8 0.8 0.024 14.5 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|304314424|ref|YP_003849571.1| - 0.00056 19.8 0.2 0.00092 19.2 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.20 gi|304314424|ref|YP_003849571.1| - 0.002 18.4 0.1 0.0041 17.4 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_6 PF01418.17 gi|304314424|ref|YP_003849571.1| - 0.0031 17.5 0.1 0.0055 16.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_5 PF01022.20 gi|304314424|ref|YP_003849571.1| - 0.0033 17.2 1.4 0.0076 16.1 0.0 2.3 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|304314424|ref|YP_003849571.1| - 0.0056 16.6 0.1 0.018 15.0 0.0 2.0 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain LexA_DNA_bind PF01726.16 gi|304314424|ref|YP_003849571.1| - 0.0069 16.1 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_10 PF04967.12 gi|304314424|ref|YP_003849571.1| - 0.0072 16.1 0.1 0.016 15.0 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|304314424|ref|YP_003849571.1| - 0.0074 16.1 0.0 0.021 14.6 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|304314424|ref|YP_003849571.1| - 0.015 15.3 0.2 0.062 13.3 0.0 2.1 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain FaeA PF04703.12 gi|304314424|ref|YP_003849571.1| - 0.043 14.2 0.3 0.087 13.2 0.1 1.6 2 0 0 2 2 1 0 FaeA-like protein TnsD PF15978.5 gi|304314424|ref|YP_003849571.1| - 0.11 11.5 0.1 0.13 11.2 0.1 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D Ribosomal_S19e PF01090.19 gi|304314424|ref|YP_003849571.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e Put_DNA-bind_N PF06971.13 gi|304314424|ref|YP_003849571.1| - 0.28 11.2 1.2 1.3 9.1 0.1 2.8 3 0 0 3 3 3 0 Putative DNA-binding protein N-terminus Gpr1_Fun34_YaaH PF01184.19 gi|304314425|ref|YP_003849572.1| - 4.9e-42 143.9 15.7 6e-42 143.6 15.7 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family AMP-binding PF00501.28 gi|304314426|ref|YP_003849573.1| - 1.4e-96 323.7 0.0 1.8e-96 323.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|304314426|ref|YP_003849573.1| - 2.4e-25 89.3 1.0 2.4e-25 89.3 1.0 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain TMEM65 PF10507.9 gi|304314426|ref|YP_003849573.1| - 0.17 11.8 0.2 0.36 10.8 0.2 1.5 1 0 0 1 1 1 0 Transmembrane protein 65 ACAS_N PF16177.5 gi|304314427|ref|YP_003849574.1| - 2.4e-17 62.6 7.6 3.6e-17 62.0 7.6 1.4 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Nsp1_C PF05064.13 gi|304314427|ref|YP_003849574.1| - 0.027 14.2 1.4 0.04 13.7 1.4 1.3 1 0 0 1 1 1 0 Nsp1-like C-terminal region Cpn60_TCP1 PF00118.24 gi|304314428|ref|YP_003849575.1| - 6.1e-183 608.9 19.6 6.9e-183 608.7 19.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Phage_tube PF04985.14 gi|304314428|ref|YP_003849575.1| - 0.017 14.9 0.0 0.042 13.5 0.0 1.7 1 0 0 1 1 1 0 Phage tail tube protein FII Flavodoxin_1 PF00258.25 gi|304314430|ref|YP_003849577.1| - 7.3e-12 45.7 0.0 1.2e-11 45.0 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|304314430|ref|YP_003849577.1| - 5.5e-09 36.3 0.1 4.9e-08 33.2 0.0 2.0 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily PGM_PMM_I PF02878.16 gi|304314430|ref|YP_003849577.1| - 0.19 11.4 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Fer4 PF00037.27 gi|304314431|ref|YP_003849578.1| - 4.1e-06 26.4 16.6 2e-05 24.2 1.1 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Dehalogenase PF13486.6 gi|304314431|ref|YP_003849578.1| - 0.00058 19.3 0.0 0.00083 18.8 0.0 1.2 1 0 0 1 1 1 1 Reductive dehalogenase subunit Fer4_6 PF12837.7 gi|304314431|ref|YP_003849578.1| - 0.0077 16.3 1.9 0.0077 16.3 1.9 3.4 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|304314431|ref|YP_003849578.1| - 0.014 15.8 3.1 0.014 15.8 3.1 3.6 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304314431|ref|YP_003849578.1| - 0.027 14.9 15.0 0.075 13.5 0.1 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304314431|ref|YP_003849578.1| - 0.029 14.4 2.5 0.029 14.4 2.5 3.7 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304314431|ref|YP_003849578.1| - 0.044 13.9 3.9 0.044 13.9 3.9 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314431|ref|YP_003849578.1| - 1.5 9.8 24.5 0.12 13.3 7.4 3.0 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Zn_protease PF05618.11 gi|304314432|ref|YP_003849579.1| - 2.8e-09 36.9 0.0 2.9e-08 33.7 0.0 2.0 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease Pep_deformylase PF01327.21 gi|304314432|ref|YP_003849579.1| - 0.00017 21.2 0.1 0.0026 17.4 0.1 2.1 1 1 0 1 1 1 1 Polypeptide deformylase DUF1611 PF07755.11 gi|304314433|ref|YP_003849580.1| - 0.049 12.9 0.0 0.26 10.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain UPF0058 PF01893.16 gi|304314434|ref|YP_003849581.1| - 1.6e-33 114.9 0.8 1.9e-33 114.6 0.8 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Histidinol_dh PF00815.20 gi|304314435|ref|YP_003849582.1| - 6e-173 575.5 0.1 6.8e-173 575.4 0.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase tRNA-synt_2 PF00152.20 gi|304314436|ref|YP_003849583.1| - 5.9e-93 311.4 0.0 7.2e-93 311.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|304314436|ref|YP_003849583.1| - 4.8e-13 48.9 0.1 8.3e-13 48.1 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|304314436|ref|YP_003849583.1| - 0.0072 15.8 0.2 0.027 14.0 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) DUF3215 PF11503.8 gi|304314436|ref|YP_003849583.1| - 0.16 11.8 0.0 1.3 8.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3215) YbaB_DNA_bd PF02575.16 gi|304314436|ref|YP_003849583.1| - 0.17 12.1 0.1 0.36 11.1 0.1 1.5 1 0 0 1 1 1 0 YbaB/EbfC DNA-binding family CbiC PF02570.15 gi|304314437|ref|YP_003849584.1| - 2e-62 210.4 3.0 2.3e-62 210.2 3.0 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase BCAS2 PF05700.11 gi|304314437|ref|YP_003849584.1| - 0.043 13.5 0.0 0.057 13.1 0.0 1.1 1 0 0 1 1 1 0 Breast carcinoma amplified sequence 2 (BCAS2) Aldo_ket_red PF00248.21 gi|304314437|ref|YP_003849584.1| - 0.14 11.3 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Aldo/keto reductase family Aminotran_3 PF00202.21 gi|304314438|ref|YP_003849585.1| - 5.3e-68 229.5 0.0 6.4e-68 229.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III DUF4012 PF13196.6 gi|304314440|ref|YP_003849587.1| - 8.4e-29 100.9 0.0 1.3e-28 100.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4012) PTA_PTB PF01515.19 gi|304314441|ref|YP_003849588.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphate acetyl/butaryl transferase Prenyltransf PF01255.19 gi|304314442|ref|YP_003849589.1| - 3e-79 265.7 0.0 3.4e-79 265.5 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase TatD_DNase PF01026.21 gi|304314443|ref|YP_003849590.1| - 1.4e-52 178.6 0.3 1.6e-52 178.4 0.3 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|304314443|ref|YP_003849590.1| - 0.00086 18.7 0.7 0.00098 18.5 0.7 1.2 1 0 0 1 1 1 1 Amidohydrolase family Hpr_kinase_N PF02603.16 gi|304314443|ref|YP_003849590.1| - 0.094 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 HPr Serine kinase N terminus CMD PF02627.20 gi|304314444|ref|YP_003849591.1| - 1.2e-23 82.9 0.2 1.6e-23 82.6 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family RibD_C PF01872.17 gi|304314445|ref|YP_003849592.1| - 8.7e-64 215.0 0.1 9.8e-64 214.9 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF483 PF04467.12 gi|304314446|ref|YP_003849593.1| - 6e-53 178.0 0.0 9.9e-53 177.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF483) CobN-Mg_chel PF02514.16 gi|304314447|ref|YP_003849594.1| - 1.4e-217 725.1 0.0 2.3e-124 416.4 0.0 2.1 1 1 1 2 2 2 2 CobN/Magnesium Chelatase SNARE_assoc PF09335.11 gi|304314448|ref|YP_003849595.1| - 4.4e-24 85.3 3.5 6.7e-24 84.7 3.5 1.2 1 0 0 1 1 1 1 SNARE associated Golgi protein GXGXG PF01493.19 gi|304314449|ref|YP_003849596.1| - 5.8e-08 32.6 13.8 2.4e-06 27.3 1.3 2.5 2 1 0 2 2 2 2 GXGXG motif FapA PF03961.13 gi|304314449|ref|YP_003849596.1| - 0.00069 18.3 1.6 0.00069 18.3 1.6 2.2 2 0 0 2 2 2 2 Flagellar Assembly Protein A DIM PF08194.12 gi|304314449|ref|YP_003849596.1| - 0.046 13.9 0.1 0.23 11.7 0.1 2.2 1 0 0 1 1 1 0 DIM protein AAA PF00004.29 gi|304314451|ref|YP_003849598.1| - 9.5e-11 42.3 0.1 3.6e-10 40.4 0.0 2.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|304314451|ref|YP_003849598.1| - 3.2e-09 37.0 0.0 1.7e-08 34.6 0.0 2.1 2 1 1 3 3 3 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|304314451|ref|YP_003849598.1| - 3.4e-08 33.4 0.0 5.7e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|304314451|ref|YP_003849598.1| - 3.9e-05 24.1 0.0 0.0001 22.7 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain Bac_DnaA PF00308.18 gi|304314451|ref|YP_003849598.1| - 0.00018 21.4 0.0 0.00063 19.6 0.0 1.9 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_5 PF07728.14 gi|304314451|ref|YP_003849598.1| - 0.00026 21.0 0.2 0.012 15.6 0.2 3.0 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|304314451|ref|YP_003849598.1| - 0.00033 21.2 0.0 0.0013 19.3 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|304314451|ref|YP_003849598.1| - 0.00037 20.5 0.0 0.0013 18.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|304314451|ref|YP_003849598.1| - 0.0004 20.7 0.0 0.00099 19.4 0.0 1.8 1 0 0 1 1 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|304314451|ref|YP_003849598.1| - 0.00059 20.1 0.5 0.0083 16.4 0.2 2.7 1 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|304314451|ref|YP_003849598.1| - 0.0019 18.0 0.0 0.005 16.6 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein DNA_pol3_delta PF06144.13 gi|304314451|ref|YP_003849598.1| - 0.0019 18.0 0.0 0.0036 17.1 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit NTPase_1 PF03266.15 gi|304314451|ref|YP_003849598.1| - 0.002 18.0 0.1 1.9 8.4 0.0 2.4 2 0 0 2 2 2 2 NTPase AAA_25 PF13481.6 gi|304314451|ref|YP_003849598.1| - 0.0037 16.9 1.2 0.085 12.4 0.2 2.4 1 1 1 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|304314451|ref|YP_003849598.1| - 0.0066 16.8 0.0 0.015 15.7 0.0 1.7 1 0 0 1 1 1 1 RNA helicase TniB PF05621.11 gi|304314451|ref|YP_003849598.1| - 0.0071 15.8 0.0 2.4 7.5 0.0 2.3 1 1 1 2 2 2 2 Bacterial TniB protein Mg_chelatase PF01078.21 gi|304314451|ref|YP_003849598.1| - 0.012 15.0 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|304314451|ref|YP_003849598.1| - 0.013 15.8 0.1 0.046 14.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|304314451|ref|YP_003849598.1| - 0.026 14.6 0.0 0.042 14.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|304314451|ref|YP_003849598.1| - 0.035 13.8 0.0 0.06 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|304314451|ref|YP_003849598.1| - 0.063 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|304314451|ref|YP_003849598.1| - 0.075 13.2 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|304314451|ref|YP_003849598.1| - 0.086 12.6 0.3 0.71 9.6 0.1 2.1 1 1 1 2 2 2 0 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|304314451|ref|YP_003849598.1| - 0.11 13.0 0.1 0.31 11.5 0.1 2.0 1 1 0 1 1 1 0 ABC transporter AAA_11 PF13086.6 gi|304314451|ref|YP_003849598.1| - 0.11 12.2 4.6 0.42 10.3 0.2 2.3 2 1 0 2 2 2 0 AAA domain Rep_fac_C PF08542.11 gi|304314452|ref|YP_003849599.1| - 5.9e-20 71.5 0.1 1.1e-19 70.6 0.1 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|304314452|ref|YP_003849599.1| - 7.4e-17 62.0 0.0 1.6e-16 61.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|304314452|ref|YP_003849599.1| - 1.7e-15 57.2 0.0 3.3e-11 43.3 0.0 2.4 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rad17 PF03215.15 gi|304314452|ref|YP_003849599.1| - 9.7e-08 32.1 0.0 1.1e-06 28.7 0.0 2.5 2 1 1 3 3 3 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|304314452|ref|YP_003849599.1| - 6.3e-07 29.9 0.0 9.4e-05 22.9 0.0 2.7 2 1 1 3 3 3 1 AAA ATPase domain RuvB_N PF05496.12 gi|304314452|ref|YP_003849599.1| - 8.3e-07 28.9 0.2 7.7e-06 25.7 0.2 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DNA_pol3_delta PF06144.13 gi|304314452|ref|YP_003849599.1| - 1.4e-06 28.2 0.0 4.5e-06 26.5 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_14 PF13173.6 gi|304314452|ref|YP_003849599.1| - 3.4e-06 27.1 0.0 6.4e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|304314452|ref|YP_003849599.1| - 2.2e-05 24.7 0.0 5.8e-05 23.3 0.0 1.8 1 0 0 1 1 1 1 AAA C-terminal domain Mg_chelatase PF01078.21 gi|304314452|ref|YP_003849599.1| - 2.2e-05 23.9 0.0 0.011 15.2 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|304314452|ref|YP_003849599.1| - 0.00026 20.8 0.0 0.00092 19.0 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein ResIII PF04851.15 gi|304314452|ref|YP_003849599.1| - 0.00048 20.2 0.0 0.00082 19.4 0.0 1.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_5 PF07728.14 gi|304314452|ref|YP_003849599.1| - 0.00075 19.5 0.3 0.014 15.4 0.2 2.7 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|304314452|ref|YP_003849599.1| - 0.00079 19.2 0.0 0.0013 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|304314452|ref|YP_003849599.1| - 0.00095 19.5 0.5 0.099 12.9 0.0 2.9 2 1 1 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|304314452|ref|YP_003849599.1| - 0.0012 19.4 0.0 0.0026 18.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|304314452|ref|YP_003849599.1| - 0.0017 18.5 0.0 0.0076 16.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.26 gi|304314452|ref|YP_003849599.1| - 0.0023 17.7 0.0 1.8 8.2 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|304314452|ref|YP_003849599.1| - 0.007 16.2 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|304314452|ref|YP_003849599.1| - 0.009 15.6 0.0 0.11 12.1 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_7 PF12775.7 gi|304314452|ref|YP_003849599.1| - 0.0097 15.4 0.0 0.023 14.2 0.0 1.7 1 1 0 1 1 1 1 P-loop containing dynein motor region TIP49 PF06068.13 gi|304314452|ref|YP_003849599.1| - 0.01 15.1 0.0 0.12 11.6 0.0 2.1 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_25 PF13481.6 gi|304314452|ref|YP_003849599.1| - 0.015 14.9 0.0 0.03 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|304314452|ref|YP_003849599.1| - 0.017 15.5 0.0 0.039 14.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase T2SSE PF00437.20 gi|304314452|ref|YP_003849599.1| - 0.029 13.4 0.0 0.054 12.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_11 PF13086.6 gi|304314452|ref|YP_003849599.1| - 0.033 14.0 0.0 0.041 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|304314452|ref|YP_003849599.1| - 0.048 13.1 0.0 0.34 10.3 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein DUF815 PF05673.13 gi|304314452|ref|YP_003849599.1| - 0.061 12.5 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TniB PF05621.11 gi|304314452|ref|YP_003849599.1| - 0.062 12.7 0.0 0.66 9.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_28 PF13521.6 gi|304314452|ref|YP_003849599.1| - 0.073 13.3 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF3400 PF11880.8 gi|304314452|ref|YP_003849599.1| - 0.09 12.3 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) Sigma54_activ_2 PF14532.6 gi|304314452|ref|YP_003849599.1| - 0.13 12.4 0.0 0.58 10.3 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain CbiA PF01656.23 gi|304314452|ref|YP_003849599.1| - 0.14 12.2 0.2 1.2 9.2 0.1 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|304314452|ref|YP_003849599.1| - 0.18 11.5 0.0 0.42 10.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Shikimate_dh_N PF08501.11 gi|304314453|ref|YP_003849600.1| - 4.5e-31 106.9 0.0 2.2e-30 104.7 0.0 2.1 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|304314453|ref|YP_003849600.1| - 5.1e-15 54.9 0.2 9.8e-15 54.0 0.2 1.5 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|304314453|ref|YP_003849600.1| - 1.8e-09 37.8 0.0 2.8e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|304314453|ref|YP_003849600.1| - 2.6e-06 26.9 0.0 4.3e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain OCD_Mu_crystall PF02423.15 gi|304314453|ref|YP_003849600.1| - 0.00012 21.1 0.0 0.00016 20.8 0.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.17 gi|304314453|ref|YP_003849600.1| - 0.00075 20.0 0.0 0.0014 19.2 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_2 PF00890.24 gi|304314453|ref|YP_003849600.1| - 0.0052 15.9 0.9 0.0077 15.4 0.9 1.2 1 0 0 1 1 1 1 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|304314453|ref|YP_003849600.1| - 0.0074 16.5 0.0 0.014 15.6 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|304314453|ref|YP_003849600.1| - 0.012 15.1 0.2 0.019 14.4 0.2 1.3 1 0 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.16 gi|304314453|ref|YP_003849600.1| - 0.024 14.3 0.2 0.043 13.5 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 gi|304314453|ref|YP_003849600.1| - 0.027 13.7 0.0 0.039 13.2 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|304314453|ref|YP_003849600.1| - 0.03 13.5 0.3 0.047 12.9 0.3 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|304314453|ref|YP_003849600.1| - 0.05 12.3 0.2 0.069 11.8 0.2 1.3 1 0 0 1 1 1 0 HI0933-like protein 3HCDH_N PF02737.18 gi|304314453|ref|YP_003849600.1| - 0.061 13.2 0.1 0.092 12.6 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PIN_5 PF08745.11 gi|304314454|ref|YP_003849601.1| - 8.9e-87 289.8 0.0 1e-86 289.7 0.0 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease tRNA-synt_His PF13393.6 gi|304314455|ref|YP_003849602.1| - 6.6e-69 232.5 0.0 9.1e-69 232.1 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|304314455|ref|YP_003849602.1| - 2.7e-18 66.6 0.0 1.3e-17 64.4 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|304314455|ref|YP_003849602.1| - 1.1e-16 60.8 0.2 2e-16 59.9 0.2 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|304314455|ref|YP_003849602.1| - 3e-05 23.3 5.7 0.00044 19.4 2.1 2.6 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|304314455|ref|YP_003849602.1| - 0.00026 20.6 0.1 0.00087 18.8 0.0 1.8 2 1 0 2 2 2 1 tRNA synthetases class II core domain (F) PRA-CH PF01502.18 gi|304314456|ref|YP_003849603.1| - 1.7e-35 120.7 0.2 2.1e-35 120.4 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PIN PF01850.21 gi|304314457|ref|YP_003849604.1| - 2.5e-11 44.1 0.0 8.8e-11 42.4 0.0 2.0 1 0 0 1 1 1 1 PIN domain T2SSE PF00437.20 gi|304314457|ref|YP_003849604.1| - 6.8e-10 38.5 0.1 1.4e-09 37.4 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.29 gi|304314457|ref|YP_003849604.1| - 8.3e-06 25.5 0.6 3e-05 23.8 0.6 2.0 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|304314457|ref|YP_003849604.1| - 0.00029 20.6 2.6 0.0013 18.5 2.6 2.1 1 0 0 1 1 1 1 KH domain AAA_16 PF13191.6 gi|304314457|ref|YP_003849604.1| - 0.00044 20.7 0.0 0.00086 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|304314457|ref|YP_003849604.1| - 0.00054 19.7 0.0 0.0017 18.1 0.0 1.9 1 1 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.6 gi|304314457|ref|YP_003849604.1| - 0.0021 18.6 0.0 0.0084 16.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|304314457|ref|YP_003849604.1| - 0.0028 17.9 0.0 0.14 12.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|304314457|ref|YP_003849604.1| - 0.0043 16.8 0.0 0.24 11.1 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.12 gi|304314457|ref|YP_003849604.1| - 0.0078 15.5 0.0 0.017 14.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.6 gi|304314457|ref|YP_003849604.1| - 0.0099 15.5 0.0 0.055 13.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|304314457|ref|YP_003849604.1| - 0.011 15.4 0.1 0.039 13.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|304314457|ref|YP_003849604.1| - 0.014 15.3 0.0 0.039 13.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|304314457|ref|YP_003849604.1| - 0.022 14.5 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_29 PF13555.6 gi|304314457|ref|YP_003849604.1| - 0.036 13.8 0.0 0.096 12.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain KH_4 PF13083.6 gi|304314457|ref|YP_003849604.1| - 0.037 13.9 0.1 0.15 12.0 0.1 2.1 1 0 0 1 1 1 0 KH domain AAA PF00004.29 gi|304314457|ref|YP_003849604.1| - 0.043 14.2 0.0 0.1 13.0 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|304314457|ref|YP_003849604.1| - 0.044 13.5 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|304314457|ref|YP_003849604.1| - 0.05 13.8 0.5 0.13 12.4 0.0 2.0 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.27 gi|304314457|ref|YP_003849604.1| - 0.058 13.9 0.0 0.18 12.3 0.0 1.9 2 0 0 2 2 1 0 ABC transporter Sigma54_activ_2 PF14532.6 gi|304314457|ref|YP_003849604.1| - 0.063 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain MeaB PF03308.16 gi|304314457|ref|YP_003849604.1| - 0.065 12.2 0.0 0.15 11.0 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF815 PF05673.13 gi|304314457|ref|YP_003849604.1| - 0.066 12.4 0.0 0.21 10.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) TsaE PF02367.17 gi|304314457|ref|YP_003849604.1| - 0.067 13.2 0.1 0.57 10.2 0.0 2.3 3 0 0 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 gi|304314457|ref|YP_003849604.1| - 0.074 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.17 gi|304314457|ref|YP_003849604.1| - 0.16 11.7 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AP_endonuc_2 PF01261.24 gi|304314458|ref|YP_003849605.1| - 5.2e-18 65.3 0.2 1.1e-17 64.2 0.2 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|304314458|ref|YP_003849605.1| - 0.097 12.4 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus F420_oxidored PF03807.17 gi|304314459|ref|YP_003849606.1| - 5.8e-18 65.3 2.9 1.2e-17 64.3 2.9 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|304314459|ref|YP_003849606.1| - 2.9e-05 23.7 2.1 4.1e-05 23.2 0.8 1.8 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|304314459|ref|YP_003849606.1| - 0.00017 21.3 0.7 0.00031 20.4 0.7 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|304314459|ref|YP_003849606.1| - 0.00092 19.4 0.5 0.002 18.3 0.5 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.24 gi|304314459|ref|YP_003849606.1| - 0.0089 16.5 1.9 0.012 16.1 1.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain PDH PF02153.17 gi|304314459|ref|YP_003849606.1| - 0.014 14.4 0.6 0.021 13.8 0.6 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|304314459|ref|YP_003849606.1| - 0.066 13.2 0.8 0.22 11.5 0.8 1.8 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NmrA PF05368.13 gi|304314459|ref|YP_003849606.1| - 0.07 12.7 2.8 0.13 11.8 2.1 1.7 2 0 0 2 2 2 0 NmrA-like family UDPG_MGDP_dh_N PF03721.14 gi|304314459|ref|YP_003849606.1| - 0.087 12.4 0.3 0.18 11.3 0.3 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|304314459|ref|YP_003849606.1| - 0.12 12.2 3.5 0.2 11.5 3.5 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LytR_C PF13399.6 gi|304314459|ref|YP_003849606.1| - 0.14 13.1 1.9 15 6.7 0.9 2.7 2 1 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator SIS PF01380.22 gi|304314460|ref|YP_003849607.1| - 2.1e-19 69.7 0.1 3.2e-19 69.1 0.1 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|304314460|ref|YP_003849607.1| - 1.5e-06 28.3 3.2 0.00025 21.1 0.3 2.2 1 1 1 2 2 2 2 SIS domain THF_DHG_CYH_C PF02882.19 gi|304314460|ref|YP_003849607.1| - 0.005 16.2 0.7 0.018 14.4 1.0 1.8 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|304314460|ref|YP_003849607.1| - 0.026 13.9 0.5 0.42 9.9 0.1 2.1 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PRMT5 PF05185.16 gi|304314460|ref|YP_003849607.1| - 0.11 12.3 0.5 1.4 8.7 0.1 2.1 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase L_biotic_typeA PF04604.13 gi|304314460|ref|YP_003849607.1| - 0.14 12.0 0.5 0.42 10.5 0.5 1.8 1 0 0 1 1 1 0 Type-A lantibiotic tRNA_int_endo PF01974.17 gi|304314461|ref|YP_003849608.1| - 1.1e-31 108.7 0.5 1.8e-31 108.1 0.5 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|304314461|ref|YP_003849608.1| - 3.3e-19 68.3 0.1 8.1e-19 67.1 0.1 1.7 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain ARS2 PF04959.13 gi|304314461|ref|YP_003849608.1| - 0.13 12.6 0.0 0.19 12.1 0.0 1.2 1 0 0 1 1 1 0 Arsenite-resistance protein 2 tRNA-synt_1b PF00579.25 gi|304314462|ref|YP_003849609.1| - 1e-57 195.7 0.0 1.2e-57 195.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) SpoIIM PF01944.17 gi|304314463|ref|YP_003849610.1| - 1.7e-25 89.8 15.5 2.2e-25 89.5 15.5 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M EI24 PF07264.11 gi|304314463|ref|YP_003849610.1| - 0.00025 21.3 4.0 0.0031 17.8 4.0 2.0 1 1 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) PALP PF00291.25 gi|304314464|ref|YP_003849611.1| - 3.1e-78 263.2 1.2 3.8e-78 262.9 1.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.16 gi|304314464|ref|YP_003849611.1| - 0.022 15.1 3.0 0.037 14.4 3.0 1.4 1 0 0 1 1 1 0 C1 domain TFIIS_C PF01096.18 gi|304314464|ref|YP_003849611.1| - 0.061 13.2 0.6 39 4.2 0.1 3.3 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.6 gi|304314464|ref|YP_003849611.1| - 0.067 12.9 0.6 0.13 12.0 0.6 1.5 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|304314464|ref|YP_003849611.1| - 0.32 11.0 2.1 0.59 10.2 2.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|304314464|ref|YP_003849611.1| - 0.37 10.7 2.7 2.6 8.1 1.9 2.4 1 1 1 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|304314464|ref|YP_003849611.1| - 0.48 10.3 3.9 0.34 10.8 0.7 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|304314464|ref|YP_003849611.1| - 0.78 9.8 2.8 1.6 8.8 2.8 1.5 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|304314464|ref|YP_003849611.1| - 4.2 7.6 5.4 3.6 7.8 2.0 2.3 1 1 1 2 2 2 0 Zinc ribbon domain CBFD_NFYB_HMF PF00808.23 gi|304314465|ref|YP_003849612.1| - 3.1e-19 69.0 0.6 3.4e-19 68.9 0.6 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|304314465|ref|YP_003849612.1| - 2.1e-09 37.8 0.1 2.2e-09 37.7 0.1 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 gi|304314465|ref|YP_003849612.1| - 2e-06 27.9 0.2 2.2e-06 27.7 0.2 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-T_C PF15511.6 gi|304314465|ref|YP_003849612.1| - 2.8e-06 27.4 0.0 3e-06 27.3 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|304314465|ref|YP_003849612.1| - 3.1e-05 24.3 0.0 3.3e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID_20kDa PF03847.13 gi|304314465|ref|YP_003849612.1| - 0.00048 20.6 0.1 0.00054 20.4 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A Bromo_TP PF07524.13 gi|304314465|ref|YP_003849612.1| - 0.029 14.4 0.0 0.032 14.2 0.0 1.0 1 0 0 1 1 1 0 Bromodomain associated DUF1931 PF09123.11 gi|304314465|ref|YP_003849612.1| - 0.033 14.3 0.3 0.036 14.2 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) TFIID-31kDa PF02291.15 gi|304314465|ref|YP_003849612.1| - 0.048 13.7 0.0 0.051 13.7 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit Ribosomal_L7Ae PF01248.26 gi|304314466|ref|YP_003849613.1| - 2.4e-28 97.7 0.2 2.9e-28 97.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|304314466|ref|YP_003849613.1| - 0.00043 20.1 0.1 0.00058 19.7 0.1 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|304314466|ref|YP_003849613.1| - 0.0027 18.2 0.2 0.0033 17.9 0.2 1.3 1 0 0 1 1 1 1 eRF1 domain 3 RNase_P_pop3 PF08228.11 gi|304314466|ref|YP_003849613.1| - 0.0031 17.6 0.0 0.0035 17.4 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 DUF1269 PF06897.12 gi|304314466|ref|YP_003849613.1| - 0.0043 17.3 0.9 3 8.2 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1269) Ribosomal_S28e PF01200.18 gi|304314467|ref|YP_003849614.1| - 5.5e-32 109.6 1.7 6e-32 109.4 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|304314468|ref|YP_003849615.1| - 8.4e-21 74.0 2.7 8.8e-21 73.9 2.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e YHS PF04945.13 gi|304314468|ref|YP_003849615.1| - 7.6e-05 22.7 1.7 0.0001 22.3 1.7 1.1 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|304314468|ref|YP_003849615.1| - 0.00035 20.4 3.2 0.00045 20.1 3.2 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-FLZ PF04570.14 gi|304314468|ref|YP_003849615.1| - 0.0015 17.9 1.9 0.0026 17.2 1.9 1.4 1 1 0 1 1 1 1 zinc-finger of the FCS-type, C2-C2 VATC PF18716.1 gi|304314468|ref|YP_003849615.1| - 0.18 11.7 7.1 0.43 10.5 7.1 1.6 1 1 0 1 1 1 0 Vms1-associating treble clef domain NDK PF00334.19 gi|304314469|ref|YP_003849616.1| - 5.2e-58 194.9 0.0 5.9e-58 194.7 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU PF00009.27 gi|304314470|ref|YP_003849617.1| - 4.4e-35 121.0 0.0 1.6e-34 119.2 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|304314470|ref|YP_003849617.1| - 4.2e-30 103.5 0.3 1.1e-29 102.2 0.3 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|304314470|ref|YP_003849617.1| - 4.7e-20 71.7 2.7 4.7e-20 71.7 2.7 2.2 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|304314470|ref|YP_003849617.1| - 8.5e-12 45.3 5.9 1.1e-10 41.7 0.0 3.5 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|304314470|ref|YP_003849617.1| - 6.9e-08 32.6 0.1 2.3e-07 30.9 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|304314470|ref|YP_003849617.1| - 0.00018 21.4 0.0 0.00055 19.8 0.0 1.9 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|304314470|ref|YP_003849617.1| - 0.0048 17.0 0.0 0.11 12.5 0.0 2.6 1 1 0 2 2 2 1 Dynamin family Ribosomal_S6e PF01092.19 gi|304314471|ref|YP_003849618.1| - 6.7e-45 152.1 0.5 7.7e-45 151.9 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e eIF2_C PF09173.11 gi|304314472|ref|YP_003849619.1| - 2.6e-34 117.3 0.1 6.5e-34 116.1 0.1 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|304314472|ref|YP_003849619.1| - 1e-30 106.8 1.9 1.1e-29 103.4 1.9 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|304314472|ref|YP_003849619.1| - 2.2e-09 37.5 1.0 6.6e-09 36.0 1.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|304314472|ref|YP_003849619.1| - 9.7e-05 22.3 1.8 0.00067 19.6 0.1 2.4 3 0 0 3 3 3 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|304314472|ref|YP_003849619.1| - 0.00023 21.2 0.0 0.00063 19.8 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|304314472|ref|YP_003849619.1| - 0.00066 19.4 0.4 0.32 10.7 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|304314472|ref|YP_003849619.1| - 0.0059 16.6 0.1 0.013 15.5 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MeaB PF03308.16 gi|304314472|ref|YP_003849619.1| - 0.019 14.0 0.9 0.055 12.4 0.1 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DZR PF12773.7 gi|304314472|ref|YP_003849619.1| - 0.022 14.8 0.7 0.052 13.6 0.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon PolC_DP2 PF03833.13 gi|304314472|ref|YP_003849619.1| - 0.022 12.6 0.2 0.031 12.2 0.2 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 cobW PF02492.19 gi|304314472|ref|YP_003849619.1| - 0.052 13.1 0.3 0.31 10.6 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Nop10p PF04135.12 gi|304314472|ref|YP_003849619.1| - 0.11 12.5 1.7 0.22 11.6 1.7 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family G-alpha PF00503.20 gi|304314472|ref|YP_003849619.1| - 0.25 10.5 0.1 0.45 9.6 0.0 1.4 2 0 0 2 2 2 0 G-protein alpha subunit zinc_ribbon_2 PF13240.6 gi|304314472|ref|YP_003849619.1| - 2.3 8.1 5.4 4.5 7.1 5.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain PIN_9 PF18477.1 gi|304314473|ref|YP_003849620.1| - 2.6e-26 92.2 0.0 3e-26 92.0 0.0 1.0 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|304314473|ref|YP_003849620.1| - 0.00015 22.1 0.0 0.14 12.4 0.0 2.1 1 1 0 1 1 1 1 PIN domain Fcf1 PF04900.12 gi|304314473|ref|YP_003849620.1| - 0.012 16.0 0.0 0.013 15.9 0.0 1.3 1 1 0 1 1 1 0 Fcf1 Pyrophosphatase PF00719.19 gi|304314474|ref|YP_003849621.1| - 2.5e-57 193.2 0.0 2.8e-57 193.0 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase SHS2_Rpb7-N PF03876.17 gi|304314475|ref|YP_003849622.1| - 2.8e-17 62.8 0.0 4.7e-17 62.1 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|304314475|ref|YP_003849622.1| - 3.1e-14 53.1 0.5 5.9e-14 52.2 0.5 1.5 1 0 0 1 1 1 1 S1 RNA binding domain Spt4 PF06093.13 gi|304314476|ref|YP_003849623.1| - 2.5e-15 56.3 0.7 5.3e-15 55.3 0.7 1.5 1 1 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|304314476|ref|YP_003849623.1| - 0.0064 16.0 3.1 0.0088 15.6 3.1 1.2 1 0 0 1 1 1 1 RecR protein zf-P11 PF03854.14 gi|304314476|ref|YP_003849623.1| - 0.091 12.4 1.4 0.14 11.8 1.4 1.3 1 0 0 1 1 1 0 P-11 zinc finger Med27 PF11571.8 gi|304314476|ref|YP_003849623.1| - 0.14 12.5 1.0 0.17 12.2 1.0 1.1 1 0 0 1 1 1 0 Mediator complex subunit 27 zn-ribbon_14 PF16503.5 gi|304314476|ref|YP_003849623.1| - 0.26 10.8 2.3 0.49 10.0 2.3 1.5 1 1 0 1 1 1 0 Zinc-ribbon Auto_anti-p27 PF06677.12 gi|304314476|ref|YP_003849623.1| - 0.35 11.1 3.1 2 8.7 0.3 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF359 PF04019.12 gi|304314477|ref|YP_003849624.1| - 5.4e-38 129.5 0.1 6.6e-38 129.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.19 gi|304314478|ref|YP_003849625.1| - 2.3e-25 88.3 0.1 3e-25 87.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|304314479|ref|YP_003849626.1| - 4.7e-17 61.9 3.8 5.4e-17 61.7 3.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|304314479|ref|YP_003849626.1| - 0.0049 17.0 1.6 0.006 16.7 1.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e NCD3G PF07562.14 gi|304314479|ref|YP_003849626.1| - 0.021 14.8 0.3 0.027 14.4 0.3 1.1 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR zf-C3HC4_4 PF15227.6 gi|304314479|ref|YP_003849626.1| - 0.033 14.3 0.4 0.043 14.0 0.4 1.2 1 0 0 1 1 1 0 zinc finger of C3HC4-type, RING Nudix_N_2 PF14803.6 gi|304314479|ref|YP_003849626.1| - 0.27 11.2 5.3 1.3 9.0 4.8 2.2 1 1 1 2 2 2 0 Nudix N-terminal RNA_POL_M_15KD PF02150.16 gi|304314479|ref|YP_003849626.1| - 0.35 10.8 5.9 1.9 8.4 4.8 2.3 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Lyase_1 PF00206.20 gi|304314480|ref|YP_003849627.1| - 5.9e-68 229.5 0.4 7.8e-68 229.2 0.4 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|304314480|ref|YP_003849627.1| - 8.2e-20 71.3 0.2 4.1e-19 69.1 0.0 2.4 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal Peptidase_M24 PF00557.24 gi|304314480|ref|YP_003849627.1| - 0.03 14.0 0.1 0.072 12.8 0.1 1.7 1 1 0 1 1 1 0 Metallopeptidase family M24 DUF3096 PF11295.8 gi|304314481|ref|YP_003849628.1| - 3.7e-05 23.3 11.2 4.3e-05 23.1 11.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3096) DUF5362 PF17319.2 gi|304314481|ref|YP_003849628.1| - 0.0056 16.5 2.0 0.0063 16.3 2.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5362) SLATT_6 PF18169.1 gi|304314481|ref|YP_003849628.1| - 0.015 14.9 1.4 0.016 14.8 1.4 1.0 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 DUF308 PF03729.13 gi|304314481|ref|YP_003849628.1| - 0.032 14.5 11.2 0.06 13.7 11.2 1.4 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) Flp_Fap PF04964.14 gi|304314481|ref|YP_003849628.1| - 0.25 11.2 3.5 0.21 11.4 2.1 1.6 1 1 0 1 1 1 0 Flp/Fap pilin component PGPGW PF09656.10 gi|304314481|ref|YP_003849628.1| - 0.94 9.0 12.1 15 5.2 11.7 2.0 1 1 1 2 2 2 0 Putative transmembrane protein (PGPGW) DUF202 PF02656.15 gi|304314481|ref|YP_003849628.1| - 2.6 8.6 5.1 1.5 9.3 1.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF202) KH_4 PF13083.6 gi|304314482|ref|YP_003849629.1| - 0.026 14.4 0.2 0.047 13.6 0.2 1.4 1 0 0 1 1 1 0 KH domain KH_2 PF07650.17 gi|304314482|ref|YP_003849629.1| - 0.54 10.1 2.7 0.32 10.8 0.4 1.9 2 0 0 2 2 2 0 KH domain Hexapep PF00132.24 gi|304314483|ref|YP_003849630.1| - 6.7e-32 108.0 20.5 2.8e-09 36.3 0.4 4.3 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|304314483|ref|YP_003849630.1| - 2.2e-16 59.3 6.2 1e-05 25.2 0.1 4.3 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|304314483|ref|YP_003849630.1| - 0.12 12.7 1.9 0.34 11.2 0.5 2.0 1 1 1 2 2 2 0 Polymer-forming cytoskeletal PBP PF01161.20 gi|304314484|ref|YP_003849631.1| - 2.4e-38 131.5 0.0 2.8e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein AAA_16 PF13191.6 gi|304314485|ref|YP_003849632.1| - 0.00011 22.6 0.0 0.00019 21.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|304314485|ref|YP_003849632.1| - 0.071 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain UbiA PF01040.18 gi|304314486|ref|YP_003849633.1| - 3.6e-18 65.8 19.2 3.6e-18 65.8 0.6 2.3 1 1 1 2 2 2 2 UbiA prenyltransferase family Glucan_synthase PF02364.15 gi|304314486|ref|YP_003849633.1| - 0.24 9.5 0.9 0.4 8.8 0.9 1.2 1 0 0 1 1 1 0 1,3-beta-glucan synthase component FAD_binding_3 PF01494.19 gi|304314487|ref|YP_003849634.1| - 2.7e-18 66.3 0.2 3.2e-14 53.0 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|304314487|ref|YP_003849634.1| - 4.7e-09 35.8 0.1 0.00023 20.4 0.7 2.5 2 1 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|304314487|ref|YP_003849634.1| - 5.5e-09 35.4 0.4 1.9e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase DAO PF01266.24 gi|304314487|ref|YP_003849634.1| - 1.6e-07 31.2 3.8 0.00098 18.8 1.3 2.9 1 1 2 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|304314487|ref|YP_003849634.1| - 1.7e-06 27.7 5.7 1.4e-05 24.7 5.7 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|304314487|ref|YP_003849634.1| - 2.7e-06 26.3 2.7 2.9e-06 26.3 1.0 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|304314487|ref|YP_003849634.1| - 5.1e-06 25.9 0.7 1.3e-05 24.6 0.7 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|304314487|ref|YP_003849634.1| - 1.2e-05 24.7 3.6 1.4e-05 24.3 1.7 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|304314487|ref|YP_003849634.1| - 2.8e-05 24.3 1.3 4.4e-05 23.6 0.2 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|304314487|ref|YP_003849634.1| - 0.00016 20.9 1.7 0.00016 20.9 1.7 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|304314487|ref|YP_003849634.1| - 0.0014 18.0 1.9 0.0016 17.7 0.6 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|304314487|ref|YP_003849634.1| - 0.014 14.6 0.9 0.014 14.6 0.9 1.9 2 1 0 2 2 2 0 Thi4 family Pyr_redox_3 PF13738.6 gi|304314487|ref|YP_003849634.1| - 0.025 13.9 0.9 0.094 12.0 0.7 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|304314487|ref|YP_003849634.1| - 0.053 13.4 0.3 0.17 11.8 0.3 1.9 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|304314487|ref|YP_003849634.1| - 0.075 13.5 0.1 0.23 11.9 0.0 1.8 1 1 0 1 1 1 0 Putative NAD(P)-binding Fer4 PF00037.27 gi|304314488|ref|YP_003849635.1| - 6.8e-13 47.9 10.5 1.9e-06 27.4 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304314488|ref|YP_003849635.1| - 1.5e-08 34.7 10.4 2.4e-08 34.0 10.4 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314488|ref|YP_003849635.1| - 4.1e-08 34.0 10.2 0.001 20.0 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|304314488|ref|YP_003849635.1| - 4.2e-08 33.2 23.2 8.2e-06 25.9 12.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314488|ref|YP_003849635.1| - 1.9e-07 31.5 11.2 4.9e-07 30.2 11.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314488|ref|YP_003849635.1| - 1.9e-06 27.9 13.2 0.0035 17.4 3.7 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304314488|ref|YP_003849635.1| - 1.1e-05 25.2 11.0 0.00022 21.1 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304314488|ref|YP_003849635.1| - 0.00019 21.3 13.1 0.00092 19.2 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304314488|ref|YP_003849635.1| - 0.00029 21.2 9.8 0.079 13.4 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304314488|ref|YP_003849635.1| - 0.002 19.0 18.1 0.05 14.5 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|304314488|ref|YP_003849635.1| - 0.0023 18.1 10.7 0.012 15.9 2.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314488|ref|YP_003849635.1| - 0.0027 18.2 13.8 0.091 13.3 2.2 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304314488|ref|YP_003849635.1| - 0.047 14.2 9.8 1.6 9.3 0.4 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|304314488|ref|YP_003849635.1| - 0.072 13.6 15.8 0.2 12.3 3.3 2.2 1 1 1 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|304314488|ref|YP_003849635.1| - 0.54 11.1 12.5 1.6 9.7 1.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain PsbP PF01789.16 gi|304314489|ref|YP_003849636.1| - 0.047 13.8 0.1 0.07 13.3 0.1 1.4 1 1 0 1 1 1 0 PsbP SoxE PF06525.11 gi|304314489|ref|YP_003849636.1| - 0.079 12.4 1.0 2.7 7.5 0.1 2.1 2 0 0 2 2 2 0 Sulfocyanin (SoxE) domain FrhB_FdhB_C PF04432.13 gi|304314490|ref|YP_003849637.1| - 6.2e-34 117.1 0.4 1.6e-33 115.7 0.0 1.9 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus NIR_SIR PF01077.22 gi|304314490|ref|YP_003849637.1| - 2.1e-32 111.8 0.1 3.8e-32 111.0 0.1 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain FrhB_FdhB_N PF04422.13 gi|304314490|ref|YP_003849637.1| - 1.2e-18 67.0 0.0 5e-18 65.0 0.0 2.1 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|304314490|ref|YP_003849637.1| - 6e-12 44.8 38.8 1.5e-05 24.6 1.2 4.9 5 0 0 5 5 5 3 4Fe-4S binding domain NIR_SIR_ferr PF03460.17 gi|304314490|ref|YP_003849637.1| - 9.6e-11 41.4 0.0 2.7e-10 39.9 0.0 1.8 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_6 PF12837.7 gi|304314490|ref|YP_003849637.1| - 1.3e-08 34.6 34.2 0.00015 21.6 1.7 4.9 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304314490|ref|YP_003849637.1| - 8.1e-08 33.1 25.1 0.029 15.3 2.4 5.1 4 1 2 6 6 6 3 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|304314490|ref|YP_003849637.1| - 1.8e-07 31.6 32.6 1.2e-05 25.7 11.6 3.9 3 2 1 4 4 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314490|ref|YP_003849637.1| - 3.6e-07 30.2 28.5 0.0013 18.8 13.0 4.4 3 2 2 5 5 5 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314490|ref|YP_003849637.1| - 5.4e-07 29.7 26.5 1.9e-05 24.7 11.2 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314490|ref|YP_003849637.1| - 1.6e-06 28.2 32.5 3.3e-06 27.2 10.8 3.5 4 1 0 4 4 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304314490|ref|YP_003849637.1| - 6.3e-06 26.0 34.5 0.01 15.9 2.4 5.5 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304314490|ref|YP_003849637.1| - 7.4e-06 26.3 20.9 0.3 11.5 0.1 4.9 4 1 2 6 6 5 4 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|304314490|ref|YP_003849637.1| - 0.0089 16.8 26.2 0.049 14.5 1.8 4.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|304314490|ref|YP_003849637.1| - 0.011 16.0 12.7 0.22 11.7 0.6 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304314490|ref|YP_003849637.1| - 0.029 14.9 1.8 0.029 14.9 1.8 5.4 6 0 0 6 6 5 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|304314490|ref|YP_003849637.1| - 0.068 13.7 29.1 0.058 13.9 2.0 4.8 4 1 2 6 6 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304314490|ref|YP_003849637.1| - 0.37 11.4 0.0 0.37 11.4 0.0 4.9 5 0 0 5 5 4 0 4Fe-4S single cluster domain of Ferredoxin I PadR PF03551.14 gi|304314491|ref|YP_003849638.1| - 5.1e-22 77.6 0.6 7.4e-22 77.1 0.6 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HxlR PF01638.17 gi|304314491|ref|YP_003849638.1| - 0.02 14.8 0.1 0.026 14.4 0.1 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|304314491|ref|YP_003849638.1| - 0.048 13.8 0.0 0.071 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|304314491|ref|YP_003849638.1| - 0.05 13.5 0.1 1.4 8.9 0.0 2.2 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB ZipA_C PF04354.13 gi|304314491|ref|YP_003849638.1| - 0.12 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 ZipA, C-terminal FtsZ-binding domain HisKA_2 PF07568.12 gi|304314492|ref|YP_003849639.1| - 2e-19 69.4 2.7 5.3e-19 68.1 2.7 1.8 1 0 0 1 1 1 1 Histidine kinase HWE_HK PF07536.14 gi|304314492|ref|YP_003849639.1| - 8.2e-07 29.6 0.6 1.8e-06 28.6 0.6 1.6 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c PF02518.26 gi|304314492|ref|YP_003849639.1| - 2e-05 25.0 0.0 0.00026 21.5 0.0 2.3 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|304314492|ref|YP_003849639.1| - 6.8e-05 22.8 0.0 0.00015 21.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|304314492|ref|YP_003849639.1| - 0.035 14.1 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 PAS fold PAS_8 PF13188.7 gi|304314492|ref|YP_003849639.1| - 0.064 13.3 0.1 0.24 11.4 0.0 2.1 2 0 0 2 2 2 0 PAS domain PIG-F PF06699.11 gi|304314492|ref|YP_003849639.1| - 1.3 9.2 8.8 1.8 8.7 0.5 2.5 2 1 0 2 2 2 0 GPI biosynthesis protein family Pig-F Flavodoxin_2 PF02525.17 gi|304314493|ref|YP_003849640.1| - 4.9e-36 124.3 0.0 5.7e-36 124.1 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|304314493|ref|YP_003849640.1| - 7.6e-10 38.7 0.0 8.9e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase NikR_C PF08753.11 gi|304314494|ref|YP_003849641.1| - 2.2e-24 85.4 5.5 3.2e-24 84.9 5.5 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|304314494|ref|YP_003849641.1| - 5e-07 29.4 1.0 1.6e-06 27.8 0.1 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|304314494|ref|YP_003849641.1| - 0.04 14.0 0.1 0.11 12.6 0.0 1.7 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system FliG_N PF14842.6 gi|304314494|ref|YP_003849641.1| - 0.058 13.9 0.8 12 6.5 0.1 2.9 2 1 1 3 3 3 0 FliG N-terminal domain DUF3426 PF11906.8 gi|304314497|ref|YP_003849644.1| - 0.00028 21.1 0.0 0.00035 20.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3426) DUF1894 PF08979.11 gi|304314497|ref|YP_003849644.1| - 0.087 13.2 0.3 4.3 7.8 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1894) KAP_NTPase PF07693.14 gi|304314500|ref|YP_003849647.1| - 3.5e-42 144.8 11.6 1.1e-40 139.9 10.1 2.8 2 1 0 2 2 2 1 KAP family P-loop domain AAA_16 PF13191.6 gi|304314500|ref|YP_003849647.1| - 1.4e-07 32.0 0.1 1.5e-06 28.7 0.0 2.6 3 1 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|304314500|ref|YP_003849647.1| - 1.5e-07 31.7 0.0 9.2e-07 29.2 0.0 2.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|304314500|ref|YP_003849647.1| - 0.0089 16.4 0.6 0.14 12.5 0.1 3.0 3 1 0 3 3 3 1 AAA domain ATP_bind_1 PF03029.17 gi|304314500|ref|YP_003849647.1| - 0.01 15.6 0.2 0.25 11.1 0.0 2.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|304314500|ref|YP_003849647.1| - 0.013 15.9 3.8 0.064 13.7 0.9 3.2 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|304314500|ref|YP_003849647.1| - 0.017 14.4 0.6 0.077 12.2 0.6 2.0 1 1 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|304314500|ref|YP_003849647.1| - 0.017 15.0 1.4 6 6.8 0.0 2.8 2 1 0 2 2 2 0 RsgA GTPase ResIII PF04851.15 gi|304314500|ref|YP_003849647.1| - 0.027 14.5 1.4 0.065 13.2 0.1 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF2791 PF10923.8 gi|304314500|ref|YP_003849647.1| - 0.037 12.9 0.1 0.12 11.2 0.0 2.0 2 0 0 2 2 2 0 P-loop Domain of unknown function (DUF2791) ABC_tran PF00005.27 gi|304314500|ref|YP_003849647.1| - 0.051 14.1 4.2 0.057 13.9 2.1 2.2 2 1 0 2 2 2 0 ABC transporter DUF4230 PF14014.6 gi|304314500|ref|YP_003849647.1| - 0.067 13.5 1.7 0.28 11.5 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4230) AAA_7 PF12775.7 gi|304314500|ref|YP_003849647.1| - 0.12 11.9 1.6 0.38 10.2 0.0 2.4 3 0 0 3 3 3 0 P-loop containing dynein motor region DUF3788 PF12663.7 gi|304314500|ref|YP_003849647.1| - 0.19 11.7 2.9 0.34 10.9 0.2 2.9 4 0 0 4 4 4 0 Protein of unknown function (DUF3788) DUF2004 PF09406.10 gi|304314500|ref|YP_003849647.1| - 0.22 11.9 4.8 1.1 9.6 0.0 3.6 4 0 0 4 4 3 0 Protein of unknown function (DUF2004) IZUMO PF15005.6 gi|304314500|ref|YP_003849647.1| - 0.43 11.1 6.4 2 8.9 0.0 4.0 2 1 1 4 4 4 0 Izumo sperm-egg fusion, Ig domain-associated SMC_N PF02463.19 gi|304314500|ref|YP_003849647.1| - 0.5 9.8 0.0 0.5 9.8 0.0 2.8 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain Polbeta PF18765.1 gi|304314501|ref|YP_003849648.1| - 2.6e-20 72.3 0.1 3.3e-20 72.0 0.1 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|304314501|ref|YP_003849648.1| - 1.1e-09 38.4 0.2 1.9e-09 37.7 0.2 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.13 gi|304314501|ref|YP_003849648.1| - 0.055 13.3 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 DUF86 PF01934.17 gi|304314502|ref|YP_003849649.1| - 6.1e-29 100.3 0.1 7.4e-29 100.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF4145 PF13643.6 gi|304314502|ref|YP_003849649.1| - 0.013 15.6 0.0 2.5 8.3 0.0 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4145) CCB1 PF12046.8 gi|304314502|ref|YP_003849649.1| - 0.08 12.3 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B MLD PF11647.8 gi|304314502|ref|YP_003849649.1| - 0.086 13.1 0.2 0.34 11.2 0.4 1.8 2 0 0 2 2 2 0 Membrane Localization Domain PMBR PF09373.10 gi|304314503|ref|YP_003849650.1| - 3.8e-15 55.2 5.9 4.7e-05 23.3 0.1 4.2 4 0 0 4 4 4 3 Pseudomurein-binding repeat Beta_helix PF13229.6 gi|304314503|ref|YP_003849650.1| - 4.9e-11 42.7 20.0 1.4e-05 25.0 5.0 2.7 1 1 1 2 2 2 2 Right handed beta helix region Chlam_PMP PF02415.17 gi|304314503|ref|YP_003849650.1| - 8e-05 22.9 31.1 3.6 8.3 0.3 9.0 8 0 0 8 8 8 2 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Adeno_E1B_55K PF01696.17 gi|304314503|ref|YP_003849650.1| - 0.0086 14.8 0.2 0.2 10.3 0.0 2.2 2 0 0 2 2 2 1 Adenovirus EB1 55K protein / large t-antigen PMBR PF09373.10 gi|304314504|ref|YP_003849651.1| - 2.2e-14 52.8 0.7 1.4e-05 25.0 0.2 4.0 3 0 0 3 3 3 2 Pseudomurein-binding repeat DUF4957 PF16318.5 gi|304314504|ref|YP_003849651.1| - 0.0019 18.1 3.3 0.13 12.2 0.0 3.4 2 2 0 2 2 2 1 Domain of unknown function (DUF4957) Peptidase_C25_C PF03785.14 gi|304314504|ref|YP_003849651.1| - 0.016 15.1 1.8 9 6.2 0.0 4.2 4 0 0 4 4 4 0 Peptidase family C25, C terminal ig-like domain Chlam_PMP PF02415.17 gi|304314504|ref|YP_003849651.1| - 0.038 14.5 45.3 2.2 8.9 0.1 10.5 10 0 0 10 10 10 0 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat DUF86 PF01934.17 gi|304314505|ref|YP_003849652.1| - 3.7e-26 91.3 0.0 4.5e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF4145 PF13643.6 gi|304314505|ref|YP_003849652.1| - 0.0014 18.7 0.0 0.0032 17.6 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4145) HEPN_RiboL-PSP PF18735.1 gi|304314505|ref|YP_003849652.1| - 0.0088 16.0 0.2 0.013 15.4 0.2 1.3 1 1 0 1 1 1 1 RiboL-PSP-HEPN NTase_sub_bind PF08780.11 gi|304314505|ref|YP_003849652.1| - 0.097 12.6 0.0 0.16 11.9 0.0 1.5 1 1 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like NPV_P10 PF05531.12 gi|304314505|ref|YP_003849652.1| - 0.14 12.6 0.0 2.5 8.7 0.0 2.4 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Polbeta PF18765.1 gi|304314506|ref|YP_003849653.1| - 1.4e-12 47.5 0.0 1.9e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|304314506|ref|YP_003849653.1| - 3.4e-05 24.1 0.1 4e-05 23.8 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF1232 PF06803.12 gi|304314508|ref|YP_003849655.1| - 1.8e-09 37.2 2.9 3.1e-09 36.5 2.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) eIF3_subunit PF08597.10 gi|304314508|ref|YP_003849655.1| - 2 8.3 3.1 1.7 8.5 0.1 1.9 2 0 0 2 2 2 0 Translation initiation factor eIF3 subunit Stc1 PF12898.7 gi|304314509|ref|YP_003849656.1| - 0.014 15.9 0.8 0.014 15.9 0.8 4.2 4 0 0 4 4 4 0 Stc1 domain zf-ribbon_3 PF13248.6 gi|304314509|ref|YP_003849656.1| - 0.21 11.0 4.4 12 5.4 0.0 3.4 2 0 0 2 2 2 0 zinc-ribbon domain EVE PF01878.18 gi|304314510|ref|YP_003849657.1| - 0.0023 18.0 0.0 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 EVE domain PhaP_Bmeg PF09602.10 gi|304314510|ref|YP_003849657.1| - 0.15 12.0 0.2 0.21 11.5 0.2 1.2 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF4298 PF14131.6 gi|304314510|ref|YP_003849657.1| - 0.15 12.0 0.7 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4298) DUF2791 PF10923.8 gi|304314511|ref|YP_003849658.1| - 1.4e-104 350.3 0.0 1.6e-104 350.1 0.0 1.0 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_22 PF13401.6 gi|304314511|ref|YP_003849658.1| - 1.3e-09 38.5 0.0 0.0009 19.5 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|304314511|ref|YP_003849658.1| - 4.3e-08 33.7 0.0 1.8e-07 31.7 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain DUF3805 PF12712.7 gi|304314511|ref|YP_003849658.1| - 0.012 15.8 0.0 0.022 14.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3805) KAP_NTPase PF07693.14 gi|304314511|ref|YP_003849658.1| - 0.029 13.6 0.1 0.06 12.6 0.1 1.7 1 1 0 1 1 1 0 KAP family P-loop domain DAP3 PF10236.9 gi|304314511|ref|YP_003849658.1| - 0.029 13.5 0.0 0.22 10.7 0.0 2.3 2 1 1 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 DEAD PF00270.29 gi|304314512|ref|YP_003849659.1| - 1.4e-33 116.2 0.0 1.5e-31 109.5 0.0 2.2 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|304314512|ref|YP_003849659.1| - 3.5e-19 69.2 0.1 2.5e-18 66.4 0.2 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|304314512|ref|YP_003849659.1| - 7e-07 29.4 0.0 1.5e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Phage_base_V PF04717.12 gi|304314512|ref|YP_003849659.1| - 0.092 12.7 0.0 1.4 8.9 0.0 2.6 2 0 0 2 2 2 0 Type VI secretion system, phage-baseplate injector MgtE_N PF03448.17 gi|304314512|ref|YP_003849659.1| - 0.29 11.8 2.0 1e+02 3.6 0.1 3.8 3 1 1 4 4 4 0 MgtE intracellular N domain MarR PF01047.22 gi|304314514|ref|YP_003849661.1| - 1.3e-17 63.4 0.1 2.1e-17 62.8 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|304314514|ref|YP_003849661.1| - 3.7e-12 45.9 0.8 4e-11 42.6 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|304314514|ref|YP_003849661.1| - 3.4e-11 43.5 0.2 3.5e-10 40.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|304314514|ref|YP_003849661.1| - 5.7e-05 22.9 0.2 0.00016 21.4 0.2 1.8 1 1 1 2 2 2 1 HxlR-like helix-turn-helix TrmB PF01978.19 gi|304314514|ref|YP_003849661.1| - 9.6e-05 22.2 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|304314514|ref|YP_003849661.1| - 0.00014 21.7 0.0 0.00024 21.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family B-block_TFIIIC PF04182.12 gi|304314514|ref|YP_003849661.1| - 0.0004 20.5 0.0 0.00052 20.1 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|304314514|ref|YP_003849661.1| - 0.00074 19.0 0.0 0.0015 18.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Replic_Relax PF13814.6 gi|304314514|ref|YP_003849661.1| - 0.0021 18.2 0.0 0.0027 17.8 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation HTH_Tnp_4 PF13613.6 gi|304314514|ref|YP_003849661.1| - 0.0034 17.1 0.0 0.51 10.1 0.0 2.8 3 0 0 3 3 3 1 Helix-turn-helix of DDE superfamily endonuclease HTH_Crp_2 PF13545.6 gi|304314514|ref|YP_003849661.1| - 0.0078 16.2 0.4 0.038 14.0 0.4 2.1 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain SMC_ScpB PF04079.16 gi|304314514|ref|YP_003849661.1| - 0.019 14.6 0.0 0.034 13.8 0.0 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB RP-C PF03428.13 gi|304314514|ref|YP_003849661.1| - 0.021 14.5 0.4 0.029 14.0 0.4 1.4 1 1 0 1 1 1 0 Replication protein C N-terminal domain GntR PF00392.21 gi|304314514|ref|YP_003849661.1| - 0.038 13.7 0.1 0.12 12.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.6 gi|304314514|ref|YP_003849661.1| - 0.042 14.0 0.0 0.093 12.9 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|304314514|ref|YP_003849661.1| - 0.11 12.5 0.0 0.64 10.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3116 PF11313.8 gi|304314514|ref|YP_003849661.1| - 0.11 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) MerR PF00376.23 gi|304314514|ref|YP_003849661.1| - 0.23 11.3 1.8 0.68 9.8 1.8 1.8 1 0 0 1 1 1 0 MerR family regulatory protein MatE PF01554.18 gi|304314515|ref|YP_003849662.1| - 1.1e-59 200.7 37.6 1.4e-32 112.6 10.9 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|304314515|ref|YP_003849662.1| - 1.7e-11 44.3 13.5 1.7e-11 44.3 13.5 5.2 3 2 0 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DUF1270 PF06900.11 gi|304314515|ref|YP_003849662.1| - 0.0078 16.6 0.3 0.0078 16.6 0.3 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF1270) DUF3467 PF11950.8 gi|304314516|ref|YP_003849663.1| - 8.9e-10 38.6 0.0 1.1e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) HTH_5 PF01022.20 gi|304314517|ref|YP_003849664.1| - 0.0001 22.1 0.0 0.00032 20.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|304314517|ref|YP_003849664.1| - 0.00011 22.0 0.1 0.00019 21.2 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|304314517|ref|YP_003849664.1| - 0.00014 21.8 0.0 0.00029 20.7 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|304314517|ref|YP_003849664.1| - 0.00025 21.0 0.0 0.00058 19.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|304314517|ref|YP_003849664.1| - 0.00068 19.9 0.0 0.00098 19.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 gi|304314517|ref|YP_003849664.1| - 0.00091 18.7 0.2 0.0036 16.8 0.0 2.1 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 gi|304314517|ref|YP_003849664.1| - 0.0023 18.3 0.1 0.0034 17.8 0.1 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|304314517|ref|YP_003849664.1| - 0.0025 17.4 0.0 0.0043 16.7 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_29 PF13551.6 gi|304314517|ref|YP_003849664.1| - 0.0047 16.9 0.0 0.0078 16.2 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn helix FUR PF01475.19 gi|304314517|ref|YP_003849664.1| - 0.0076 16.4 0.3 0.18 11.9 0.1 2.2 1 1 1 2 2 2 1 Ferric uptake regulator family DUF2250 PF10007.9 gi|304314517|ref|YP_003849664.1| - 0.0078 16.3 0.2 0.024 14.7 0.1 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Terminase_5 PF06056.12 gi|304314517|ref|YP_003849664.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_IclR PF09339.10 gi|304314517|ref|YP_003849664.1| - 0.014 15.2 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|304314517|ref|YP_003849664.1| - 0.028 14.3 0.0 0.17 11.8 0.0 2.1 2 0 0 2 2 2 0 MarR family DUF4423 PF14394.6 gi|304314517|ref|YP_003849664.1| - 0.066 12.9 0.3 0.27 10.9 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) Sigma70_r4_2 PF08281.12 gi|304314517|ref|YP_003849664.1| - 0.069 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|304314517|ref|YP_003849664.1| - 0.07 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Type2_restr_D3 PF16902.5 gi|304314517|ref|YP_003849664.1| - 0.071 13.0 0.4 11 6.0 0.0 2.4 2 1 0 2 2 2 0 Type-2 restriction enzyme D3 domain GerE PF00196.19 gi|304314517|ref|YP_003849664.1| - 0.082 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Replic_Relax PF13814.6 gi|304314517|ref|YP_003849664.1| - 0.095 12.8 0.0 4.2 7.4 0.0 2.1 1 1 1 2 2 2 0 Replication-relaxation MarR_2 PF12802.7 gi|304314517|ref|YP_003849664.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 MarR family PmrD PF11183.8 gi|304314517|ref|YP_003849664.1| - 0.12 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Polymyxin resistance protein PmrD Alpha_TIF PF02232.15 gi|304314518|ref|YP_003849665.1| - 0.096 11.8 0.2 0.11 11.6 0.2 1.1 1 0 0 1 1 1 0 Alpha trans-inducing protein (Alpha-TIF) TauE PF01925.19 gi|304314519|ref|YP_003849666.1| - 0.00061 19.5 21.4 0.00076 19.2 21.4 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2417 PF10329.9 gi|304314519|ref|YP_003849666.1| - 1.3 8.4 4.8 1.2 8.5 2.7 1.8 2 0 0 2 2 2 0 Region of unknown function (DUF2417) SBF PF01758.16 gi|304314520|ref|YP_003849667.1| - 1.7e-41 142.1 12.0 1.7e-41 142.1 12.0 2.3 2 1 0 2 2 2 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|304314520|ref|YP_003849667.1| - 9.8e-12 44.8 24.4 1.2e-11 44.5 24.4 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) V_ATPase_I PF01496.19 gi|304314520|ref|YP_003849667.1| - 0.6 8.0 1.3 0.82 7.5 1.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family C5-epim_C PF06662.13 gi|304314521|ref|YP_003849668.1| - 4.1e-42 143.8 7.0 4.1e-42 143.8 7.0 1.7 2 0 0 2 2 2 1 D-glucuronyl C5-epimerase C-terminus Glycos_transf_2 PF00535.26 gi|304314522|ref|YP_003849669.1| - 5.4e-28 97.9 0.0 7.9e-28 97.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|304314522|ref|YP_003849669.1| - 1.3e-12 48.1 0.0 1.6e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|304314522|ref|YP_003849669.1| - 0.011 16.3 0.0 0.035 14.6 0.0 1.9 2 1 0 2 2 2 0 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|304314522|ref|YP_003849669.1| - 0.16 11.4 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|304314523|ref|YP_003849670.1| - 2.7e-28 98.9 0.0 3.9e-28 98.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|304314523|ref|YP_003849670.1| - 4.4e-18 66.0 0.0 6.5e-18 65.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|304314523|ref|YP_003849670.1| - 1.1e-12 48.0 0.0 8.3e-08 32.0 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|304314523|ref|YP_003849670.1| - 1e-07 31.6 0.0 1.7e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.14 gi|304314523|ref|YP_003849670.1| - 5.5e-07 29.2 0.0 1e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.6 gi|304314523|ref|YP_003849670.1| - 1.6e-05 25.3 0.0 3e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|304314523|ref|YP_003849670.1| - 0.00083 19.3 0.1 0.0024 17.8 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_trans_1_4 PF13692.6 gi|304314524|ref|YP_003849671.1| - 1.8e-16 60.8 0.0 2.6e-16 60.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|304314524|ref|YP_003849671.1| - 1.2e-10 41.7 0.0 2e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|304314524|ref|YP_003849671.1| - 8.4e-09 35.2 0.0 1.4e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|304314524|ref|YP_003849671.1| - 1.3e-08 35.1 0.0 2.5e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|304314524|ref|YP_003849671.1| - 0.00014 22.3 0.0 0.00019 21.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain IFN-gamma PF00714.17 gi|304314524|ref|YP_003849671.1| - 0.14 12.0 3.4 0.073 12.9 0.7 2.0 2 0 0 2 2 2 0 Interferon gamma Glycos_transf_1 PF00534.20 gi|304314525|ref|YP_003849672.1| - 1.9e-17 63.4 0.7 3.5e-17 62.5 0.7 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|304314525|ref|YP_003849672.1| - 3.7e-15 56.5 0.0 5.5e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|304314525|ref|YP_003849672.1| - 4.7e-07 30.1 0.0 1.1e-06 29.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|304314525|ref|YP_003849672.1| - 0.018 15.1 0.0 7.6 6.5 0.0 3.6 2 1 1 3 3 3 0 Glycosyltransferase Family 4 Methyltransf_25 PF13649.6 gi|304314526|ref|YP_003849673.1| - 4.5e-20 72.1 0.0 9.9e-20 71.1 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|304314526|ref|YP_003849673.1| - 1e-18 67.7 0.0 1.6e-18 67.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|304314526|ref|YP_003849673.1| - 4.6e-14 52.5 0.0 6.8e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|304314526|ref|YP_003849673.1| - 2e-12 47.0 0.0 2.8e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|304314526|ref|YP_003849673.1| - 1.4e-11 44.5 0.0 1.8e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|304314526|ref|YP_003849673.1| - 7.8e-11 42.6 0.0 1.4e-10 41.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|304314526|ref|YP_003849673.1| - 1.8e-06 27.2 0.0 2.4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.15 gi|304314526|ref|YP_003849673.1| - 2.2e-05 24.4 0.0 0.0001 22.2 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.12 gi|304314526|ref|YP_003849673.1| - 9.4e-05 22.1 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TPMT PF05724.11 gi|304314526|ref|YP_003849673.1| - 0.00038 20.2 0.0 0.00054 19.7 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) N6_N4_Mtase PF01555.18 gi|304314526|ref|YP_003849673.1| - 0.017 14.9 0.2 0.79 9.4 0.0 2.2 2 0 0 2 2 2 0 DNA methylase Methyltransf_29 PF03141.16 gi|304314526|ref|YP_003849673.1| - 0.019 13.5 0.0 0.024 13.2 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_15 PF09445.10 gi|304314526|ref|YP_003849673.1| - 0.036 13.6 0.0 0.057 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase zf-C3HC4_3 PF13920.6 gi|304314526|ref|YP_003849673.1| - 0.064 13.1 3.5 0.11 12.3 3.5 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.11 gi|304314526|ref|YP_003849673.1| - 0.35 10.8 2.7 0.79 9.7 2.7 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 gi|304314526|ref|YP_003849673.1| - 0.4 10.7 3.9 9.9 6.2 0.3 2.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Thymidylate_kin PF02223.17 gi|304314527|ref|YP_003849674.1| - 1.1e-14 54.5 0.2 7.6e-08 32.3 0.1 2.2 2 0 0 2 2 2 2 Thymidylate kinase AAA_18 PF13238.6 gi|304314527|ref|YP_003849674.1| - 7.6e-05 23.3 0.1 0.0019 18.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|304314527|ref|YP_003849674.1| - 0.00045 20.5 0.1 0.0044 17.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|304314527|ref|YP_003849674.1| - 0.0032 18.0 0.0 0.0094 16.5 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_16 PF13191.6 gi|304314527|ref|YP_003849674.1| - 0.0072 16.7 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|304314527|ref|YP_003849674.1| - 0.0092 16.0 3.1 0.43 10.6 0.1 2.7 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|304314527|ref|YP_003849674.1| - 0.0095 15.9 0.0 0.029 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|304314527|ref|YP_003849674.1| - 0.01 15.1 0.0 0.15 11.2 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain APS_kinase PF01583.20 gi|304314527|ref|YP_003849674.1| - 0.012 15.5 0.0 0.031 14.2 0.0 1.6 2 0 0 2 2 2 0 Adenylylsulphate kinase RNA_helicase PF00910.22 gi|304314527|ref|YP_003849674.1| - 0.017 15.5 0.2 4.1 7.8 0.0 2.3 2 1 0 2 2 2 0 RNA helicase Zeta_toxin PF06414.12 gi|304314527|ref|YP_003849674.1| - 0.035 13.4 0.0 0.061 12.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|304314527|ref|YP_003849674.1| - 0.051 13.3 0.0 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|304314527|ref|YP_003849674.1| - 0.054 13.7 0.0 2.1 8.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|304314527|ref|YP_003849674.1| - 0.089 13.0 0.0 0.11 12.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|304314527|ref|YP_003849674.1| - 0.17 12.3 0.0 0.56 10.6 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Phosphodiest PF01663.22 gi|304314528|ref|YP_003849675.1| - 1.2e-22 81.0 0.0 1.4e-22 80.8 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Phosphodiest PF01663.22 gi|304314529|ref|YP_003849676.1| - 1.3e-05 24.9 0.0 7.3e-05 22.5 0.0 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|304314529|ref|YP_003849676.1| - 0.12 11.8 0.1 5 6.4 0.0 2.1 2 0 0 2 2 2 0 Sulfatase Glycos_transf_1 PF00534.20 gi|304314530|ref|YP_003849677.1| - 1.1e-36 126.0 1.0 2.8e-36 124.6 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|304314530|ref|YP_003849677.1| - 1.6e-29 103.1 0.0 2.9e-29 102.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|304314530|ref|YP_003849677.1| - 3.3e-08 33.8 0.0 5.6e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF2206 PF09971.9 gi|304314531|ref|YP_003849678.1| - 1.5e-85 287.2 23.0 1.5e-85 287.2 23.0 3.0 2 1 1 3 3 3 1 Predicted membrane protein (DUF2206) DUF1616 PF07760.11 gi|304314531|ref|YP_003849678.1| - 0.0048 16.3 5.3 0.0048 16.3 5.3 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1616) SHR3_chaperone PF08229.11 gi|304314531|ref|YP_003849678.1| - 0.0097 14.9 1.3 0.0097 14.9 1.3 2.8 3 0 0 3 3 3 1 ER membrane protein SH3 Glycos_transf_1 PF00534.20 gi|304314532|ref|YP_003849679.1| - 6.4e-29 100.7 2.0 7.2e-28 97.3 0.7 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|304314532|ref|YP_003849679.1| - 1.6e-19 70.7 0.0 4.9e-18 65.9 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|304314532|ref|YP_003849679.1| - 5.4e-09 36.3 0.0 9.4e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|304314532|ref|YP_003849679.1| - 2.6e-05 24.5 0.0 4.6e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Flavodoxin_3 PF12641.7 gi|304314532|ref|YP_003849679.1| - 0.00079 19.1 0.2 0.0023 17.7 0.1 1.8 2 0 0 2 2 2 1 Flavodoxin domain Glyco_trans_4_2 PF13477.6 gi|304314532|ref|YP_003849679.1| - 0.033 14.2 0.8 0.033 14.2 0.8 2.6 3 0 0 3 3 3 0 Glycosyl transferase 4-like Polysacc_synt PF01943.17 gi|304314533|ref|YP_003849680.1| - 2.5e-64 217.3 51.8 1.5e-62 211.5 28.6 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|304314533|ref|YP_003849680.1| - 1.9e-18 66.7 23.6 1.9e-18 66.7 23.6 2.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|304314533|ref|YP_003849680.1| - 2.1e-06 27.8 8.9 2.1e-06 27.8 8.9 4.5 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain DUF1689 PF07954.11 gi|304314533|ref|YP_003849680.1| - 2.2 8.7 4.9 14 6.1 0.0 3.2 3 1 1 4 4 4 0 Protein of unknown function (DUF1689) DUF2766 PF10964.8 gi|304314535|ref|YP_003849682.1| - 0.12 12.3 0.0 2.5 8.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2766) RNA_pol_A_CTD PF03118.15 gi|304314536|ref|YP_003849683.1| - 0.064 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain Herpes_U59 PF04529.12 gi|304314536|ref|YP_003849683.1| - 0.11 11.5 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus U59 protein Glycos_transf_2 PF00535.26 gi|304314537|ref|YP_003849684.1| - 4.9e-26 91.6 0.0 2.1e-25 89.5 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|304314537|ref|YP_003849684.1| - 8.7e-12 45.4 0.0 6.7e-10 39.2 0.0 2.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|304314537|ref|YP_003849684.1| - 9.1e-06 25.7 0.0 3.5e-05 23.8 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|304314537|ref|YP_003849684.1| - 0.0034 17.9 0.0 0.014 15.9 0.0 2.0 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|304314537|ref|YP_003849684.1| - 0.2 11.1 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 GLF PF03275.13 gi|304314538|ref|YP_003849685.1| - 1.6e-05 24.8 0.5 1.8e-05 24.5 0.5 1.1 1 0 0 1 1 1 1 UDP-galactopyranose mutase aGPT-Pplase2 PF18724.1 gi|304314538|ref|YP_003849685.1| - 0.12 12.1 0.0 0.12 12.1 0.0 1.0 1 0 0 1 1 1 0 Alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 2 LPG_synthase_TM PF03706.13 gi|304314539|ref|YP_003849686.1| - 8.1e-18 65.0 14.0 9.2e-18 64.8 14.0 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Polysacc_synt PF01943.17 gi|304314540|ref|YP_003849687.1| - 6.8e-59 199.5 35.3 6.8e-59 199.5 35.3 2.4 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|304314540|ref|YP_003849687.1| - 9.1e-18 64.7 12.7 9.1e-18 64.7 12.7 4.3 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|304314540|ref|YP_003849687.1| - 1.3e-15 57.4 24.5 2.5e-15 56.5 24.5 1.5 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|304314540|ref|YP_003849687.1| - 5.3e-10 39.2 14.6 5.3e-10 39.2 14.6 3.4 2 1 1 3 3 3 2 MatE TMEM192 PF14802.6 gi|304314540|ref|YP_003849687.1| - 2.2 7.3 6.6 0.6 9.2 2.2 2.2 2 0 0 2 2 2 0 TMEM192 family Use1 PF09753.9 gi|304314540|ref|YP_003849687.1| - 3.8 7.2 6.0 15 5.2 1.1 2.2 2 0 0 2 2 2 0 Membrane fusion protein Use1 Epimerase PF01370.21 gi|304314541|ref|YP_003849688.1| - 2e-59 201.0 0.0 2.4e-59 200.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|304314541|ref|YP_003849688.1| - 6.1e-54 183.7 0.0 4e-53 181.0 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|304314541|ref|YP_003849688.1| - 7.9e-22 77.6 0.0 1.1e-21 77.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|304314541|ref|YP_003849688.1| - 7.6e-15 54.8 0.0 5.2e-14 52.1 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|304314541|ref|YP_003849688.1| - 1.9e-11 43.6 0.0 2.8e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|304314541|ref|YP_003849688.1| - 1e-08 34.7 0.1 0.00026 20.3 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|304314541|ref|YP_003849688.1| - 7.8e-07 29.2 0.0 1.1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding DUF1616 PF07760.11 gi|304314542|ref|YP_003849689.1| - 6.8e-50 170.1 13.2 1.7e-49 168.8 1.0 2.7 2 1 1 3 3 3 2 Protein of unknown function (DUF1616) DUF2269 PF10027.9 gi|304314542|ref|YP_003849689.1| - 0.03 14.4 4.5 0.034 14.2 0.3 2.9 2 1 0 2 2 2 0 Predicted integral membrane protein (DUF2269) Glyco_hydro_61 PF03443.14 gi|304314543|ref|YP_003849690.1| - 0.064 13.2 0.0 0.066 13.1 0.0 1.4 1 1 0 1 1 1 0 Glycosyl hydrolase family 61 NiFe_hyd_3_EhaA PF17367.2 gi|304314545|ref|YP_003849692.1| - 3.4e-33 113.7 4.7 4.2e-33 113.4 4.7 1.0 1 0 0 1 1 1 1 NiFe-hydrogenase-type-3 Eha complex subunit A DUF2474 PF10617.9 gi|304314545|ref|YP_003849692.1| - 0.12 12.2 1.5 3 7.8 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2474) DUF4118 PF13493.6 gi|304314545|ref|YP_003849692.1| - 7.3 6.4 9.7 14 5.5 3.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4118) DUF2109 PF09882.9 gi|304314547|ref|YP_003849694.1| - 1e-32 112.0 5.0 1.1e-32 111.8 5.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2109) PhrC_PhrF PF11131.8 gi|304314547|ref|YP_003849694.1| - 0.085 12.5 1.2 0.16 11.6 1.2 1.5 1 0 0 1 1 1 0 Rap-phr extracellular signalling DUF2254 PF10011.9 gi|304314547|ref|YP_003849694.1| - 0.11 11.3 2.5 0.13 11.0 2.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF2108 PF09881.9 gi|304314548|ref|YP_003849695.1| - 4.3e-27 93.9 6.2 5.2e-27 93.6 6.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2108) DUF4040 PF13244.6 gi|304314548|ref|YP_003849695.1| - 0.0097 16.0 5.9 0.013 15.6 5.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF2107 PF09880.9 gi|304314549|ref|YP_003849696.1| - 8.9e-35 118.6 7.0 1e-34 118.4 7.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) YrhK PF14145.6 gi|304314549|ref|YP_003849696.1| - 0.13 12.2 2.0 7.1 6.6 0.1 2.2 2 0 0 2 2 2 0 YrhK-like protein DUF2106 PF09879.9 gi|304314550|ref|YP_003849697.1| - 9.6e-73 242.7 0.1 1.1e-72 242.5 0.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) DUF2105 PF09878.9 gi|304314551|ref|YP_003849698.1| - 3.1e-84 281.7 15.1 3.5e-84 281.5 15.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2105) NADHdeh_related PF10125.9 gi|304314552|ref|YP_003849699.1| - 8.8e-100 332.6 14.5 9.9e-100 332.4 14.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_M PF00361.20 gi|304314552|ref|YP_003849699.1| - 1.4e-07 31.0 8.5 1.4e-07 31.0 8.5 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter DUF3667 PF12412.8 gi|304314552|ref|YP_003849699.1| - 0.071 12.6 0.9 0.23 11.0 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3667) DUF2207 PF09972.9 gi|304314553|ref|YP_003849700.1| - 0.018 13.8 0.1 0.018 13.8 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4175 PF13779.6 gi|304314553|ref|YP_003849700.1| - 0.026 12.4 0.1 0.031 12.2 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Tetraspanin PF00335.20 gi|304314553|ref|YP_003849700.1| - 0.029 14.1 0.0 0.033 13.9 0.0 1.0 1 0 0 1 1 1 0 Tetraspanin family TMEM208_SND2 PF05620.11 gi|304314553|ref|YP_003849700.1| - 0.1 12.3 0.0 0.11 12.2 0.0 1.0 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 NADHdh PF00146.21 gi|304314554|ref|YP_003849701.1| - 2.7e-30 105.7 19.7 3.5e-30 105.4 19.7 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Caps_synth_CapC PF14102.6 gi|304314555|ref|YP_003849702.1| - 0.01 16.3 9.0 0.016 15.6 9.0 1.3 1 1 0 1 1 1 0 Capsule biosynthesis CapC DUF2104 PF09877.9 gi|304314556|ref|YP_003849703.1| - 3.1e-35 120.4 3.8 3.5e-35 120.3 3.8 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2104) Sec61_beta PF03911.16 gi|304314556|ref|YP_003849703.1| - 5.4 7.1 6.5 13 6.0 0.3 2.8 3 0 0 3 3 3 0 Sec61beta family DUF1959 PF09218.10 gi|304314557|ref|YP_003849704.1| - 2.4e-46 156.6 0.7 2.7e-46 156.4 0.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1959) Baculo_p33 PF05214.12 gi|304314557|ref|YP_003849704.1| - 0.013 15.2 0.1 0.015 15.0 0.1 1.0 1 0 0 1 1 1 0 Baculovirus P33 Oxidored_q6 PF01058.22 gi|304314558|ref|YP_003849705.1| - 6.7e-27 93.9 0.0 8e-27 93.6 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|304314559|ref|YP_003849706.1| - 1.5e-47 162.0 1.7 6.5e-40 136.9 0.7 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|304314559|ref|YP_003849706.1| - 6.4e-15 55.0 4.7 5.3e-12 45.4 0.0 3.6 2 2 1 3 3 3 2 Nickel-dependent hydrogenase Fer4 PF00037.27 gi|304314560|ref|YP_003849707.1| - 2.5e-37 125.2 59.1 4.2e-08 32.7 1.8 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304314560|ref|YP_003849707.1| - 1.1e-32 110.7 55.9 5.9e-07 29.3 2.0 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304314560|ref|YP_003849707.1| - 6.4e-27 93.9 81.3 1.2e-08 35.4 11.2 4.2 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304314560|ref|YP_003849707.1| - 1e-25 88.2 54.6 0.00012 22.0 3.7 6.4 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304314560|ref|YP_003849707.1| - 2.3e-25 88.4 52.8 5.8e-10 39.1 12.5 5.3 3 3 3 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314560|ref|YP_003849707.1| - 3.3e-24 84.8 44.8 1.8e-08 34.4 10.5 3.9 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314560|ref|YP_003849707.1| - 8.5e-23 80.3 45.5 4.5e-09 36.3 10.1 4.0 3 2 1 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314560|ref|YP_003849707.1| - 1.1e-19 71.1 42.5 0.00011 23.1 1.5 6.3 5 1 2 7 7 7 6 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|304314560|ref|YP_003849707.1| - 3.9e-15 55.0 58.0 0.00034 20.9 1.4 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304314560|ref|YP_003849707.1| - 1.7e-14 54.0 49.5 0.00029 21.2 9.5 6.0 3 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314560|ref|YP_003849707.1| - 5.7e-14 52.4 46.1 0.0065 17.0 0.1 5.8 3 2 6 9 9 9 9 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304314560|ref|YP_003849707.1| - 7.6e-10 39.0 67.4 0.027 15.4 4.4 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_13 PF13370.6 gi|304314560|ref|YP_003849707.1| - 4.6e-09 36.7 43.6 0.03 14.8 0.3 6.5 6 0 0 6 6 6 6 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|304314560|ref|YP_003849707.1| - 2.1e-07 31.7 36.2 0.0076 17.1 0.1 6.2 5 1 1 6 6 6 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|304314560|ref|YP_003849707.1| - 2.5e-05 24.9 42.9 0.048 14.4 2.4 6.8 5 2 0 5 5 5 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|304314560|ref|YP_003849707.1| - 0.00045 20.4 46.0 0.51 10.6 11.2 5.3 2 2 3 5 5 5 5 4Fe-4S dicluster domain PEP-utilisers_N PF05524.13 gi|304314560|ref|YP_003849707.1| - 0.075 13.2 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal Mut7-C PF01927.16 gi|304314560|ref|YP_003849707.1| - 2.1 8.4 17.9 0.074 13.1 1.4 3.2 3 0 0 3 3 3 0 Mut7-C RNAse domain Fer4 PF00037.27 gi|304314561|ref|YP_003849708.1| - 8.8e-53 174.1 99.5 1.4e-09 37.3 3.7 9.2 9 0 0 9 9 9 9 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304314561|ref|YP_003849708.1| - 1.9e-42 143.6 66.5 1.8e-09 38.1 10.8 6.3 4 2 2 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314561|ref|YP_003849708.1| - 1.1e-40 137.5 68.6 9.5e-08 32.0 13.4 8.1 6 2 2 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304314561|ref|YP_003849708.1| - 2.5e-34 115.9 96.8 3.6e-07 30.0 3.4 9.3 9 0 0 9 9 9 7 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304314561|ref|YP_003849708.1| - 4.4e-32 110.8 62.6 0.00016 22.5 0.5 9.2 8 1 1 9 9 9 9 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|304314561|ref|YP_003849708.1| - 6.8e-32 109.4 80.5 4.4e-10 39.5 11.2 7.2 4 3 4 8 8 8 8 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314561|ref|YP_003849708.1| - 4.1e-31 106.9 73.0 2e-08 34.2 10.0 6.5 5 2 3 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304314561|ref|YP_003849708.1| - 6.7e-29 98.2 90.0 3.9e-05 23.5 3.4 9.3 9 0 0 9 9 9 9 4Fe-4S binding domain Fer4_4 PF12800.7 gi|304314561|ref|YP_003849708.1| - 4.9e-21 73.4 92.3 0.0063 16.9 3.2 9.2 9 0 0 9 9 9 9 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304314561|ref|YP_003849708.1| - 8.6e-17 61.3 77.5 0.00033 21.0 11.5 8.2 4 3 1 7 7 7 6 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314561|ref|YP_003849708.1| - 5.6e-13 49.2 79.5 0.032 14.8 0.9 9.0 5 3 4 9 9 9 9 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304314561|ref|YP_003849708.1| - 2.9e-12 46.6 111.3 0.038 14.9 4.7 9.2 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_22 PF17179.4 gi|304314561|ref|YP_003849708.1| - 5.7e-07 30.3 67.6 0.18 12.7 0.6 9.1 8 1 1 9 9 9 6 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304314561|ref|YP_003849708.1| - 2.6e-06 27.9 86.8 0.26 11.8 3.0 9.4 9 0 0 9 9 9 6 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|304314561|ref|YP_003849708.1| - 4.9e-06 27.2 78.0 0.067 13.9 1.5 9.9 8 3 0 8 8 8 5 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|304314561|ref|YP_003849708.1| - 0.0017 18.5 68.8 0.3 11.3 9.1 7.8 5 2 1 6 6 5 3 4Fe-4S dicluster domain HAD PF12710.7 gi|304314562|ref|YP_003849709.1| - 0.002 18.5 0.1 0.59 10.5 0.0 2.8 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|304314562|ref|YP_003849709.1| - 0.0056 16.8 0.0 0.11 12.5 0.0 2.6 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|304314562|ref|YP_003849709.1| - 0.0066 16.8 0.0 2.4 8.4 0.0 2.3 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase FTR_C PF02741.15 gi|304314563|ref|YP_003849710.1| - 1.2e-55 187.6 0.0 1.8e-55 187.0 0.0 1.3 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.18 gi|304314563|ref|YP_003849710.1| - 5.7e-45 152.8 0.0 7.7e-45 152.3 0.0 1.2 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase PfkB PF00294.24 gi|304314564|ref|YP_003849711.1| - 3e-44 151.5 0.0 4.6e-44 150.9 0.0 1.2 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Fer4 PF00037.27 gi|304314565|ref|YP_003849712.1| - 5.5e-39 130.5 63.9 1.3e-08 34.3 5.5 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304314565|ref|YP_003849712.1| - 2.9e-27 95.0 45.7 8.2e-12 45.5 8.8 4.5 4 1 0 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314565|ref|YP_003849712.1| - 3.1e-24 84.9 86.1 1.1e-08 35.1 12.2 3.7 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304314565|ref|YP_003849712.1| - 4.5e-24 83.5 66.0 1.6e-07 31.1 5.1 6.4 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304314565|ref|YP_003849712.1| - 4.5e-23 82.0 46.5 2.2e-05 25.3 14.9 6.1 5 1 1 6 6 6 6 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|304314565|ref|YP_003849712.1| - 7e-22 76.1 57.8 1.4e-05 24.9 3.8 6.4 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304314565|ref|YP_003849712.1| - 1.3e-21 76.5 90.3 2.6e-07 30.6 13.0 4.6 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314565|ref|YP_003849712.1| - 2.2e-18 66.1 57.7 6.5e-07 29.4 13.9 5.5 2 2 4 6 6 6 6 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304314565|ref|YP_003849712.1| - 6.5e-15 55.3 50.5 1.7e-05 25.2 10.8 5.3 3 2 3 6 6 5 5 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314565|ref|YP_003849712.1| - 5.8e-13 49.2 47.7 1.8e-05 25.2 9.4 5.2 3 2 0 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304314565|ref|YP_003849712.1| - 5.2e-11 42.1 63.6 0.0011 19.3 3.2 6.3 6 0 0 6 6 6 5 4Fe-4S binding domain Fer4_3 PF12798.7 gi|304314565|ref|YP_003849712.1| - 1.1e-06 29.2 74.9 0.00059 20.6 6.2 6.4 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_13 PF13370.6 gi|304314565|ref|YP_003849712.1| - 1.3e-06 28.8 60.6 0.012 16.2 3.6 6.7 6 0 0 6 6 6 5 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|304314565|ref|YP_003849712.1| - 0.00071 19.7 54.1 0.017 15.3 9.6 5.4 1 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|304314565|ref|YP_003849712.1| - 0.0017 19.0 0.5 0.0017 19.0 0.5 7.7 6 4 1 7 7 7 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|304314565|ref|YP_003849712.1| - 0.089 13.7 2.0 0.089 13.7 2.0 6.3 4 2 2 7 7 7 0 4Fe-4S dicluster domain CBS PF00571.28 gi|304314566|ref|YP_003849713.1| - 7.1e-16 58.4 5.1 2.3e-08 34.3 0.3 2.5 2 0 0 2 2 2 2 CBS domain PRC PF05239.16 gi|304314566|ref|YP_003849713.1| - 0.0054 16.8 0.6 3.1 8.0 0.0 2.4 2 0 0 2 2 2 2 PRC-barrel domain sCache_3_2 PF17203.4 gi|304314566|ref|YP_003849713.1| - 0.0088 16.2 0.1 1.5 8.9 0.0 2.3 2 0 0 2 2 2 2 Single cache domain 3 Ribosomal_L9_C PF03948.14 gi|304314566|ref|YP_003849713.1| - 0.054 14.0 0.0 11 6.5 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein L9, C-terminal domain HZS_alpha PF18582.1 gi|304314566|ref|YP_003849713.1| - 0.077 13.5 0.0 4.7 7.7 0.0 2.7 3 0 0 3 3 3 0 Hydrazine synthase alpha subunit middle domain DUF3659 PF12396.8 gi|304314566|ref|YP_003849713.1| - 0.28 11.1 1.5 20 5.2 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3659) E1-E2_ATPase PF00122.20 gi|304314567|ref|YP_003849714.1| - 2.1e-49 167.5 0.9 4.4e-49 166.5 0.9 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|304314567|ref|YP_003849714.1| - 7.1e-40 137.5 0.4 1.7e-39 136.3 0.1 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|304314567|ref|YP_003849714.1| - 0.0068 16.2 2.9 0.26 11.0 1.0 2.5 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase SseC PF04888.12 gi|304314567|ref|YP_003849714.1| - 0.015 15.0 0.9 0.092 12.3 0.0 2.3 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family HAD PF12710.7 gi|304314567|ref|YP_003849714.1| - 0.059 13.8 0.1 0.26 11.7 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF3386 PF11866.8 gi|304314567|ref|YP_003849714.1| - 0.11 12.0 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3386) OmdA PF13376.6 gi|304314567|ref|YP_003849714.1| - 0.14 12.2 0.6 0.32 11.0 0.6 1.6 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated PMBR PF09373.10 gi|304314568|ref|YP_003849715.1| - 9e-54 177.2 4.6 3.9e-09 36.2 0.0 7.4 8 0 0 8 8 8 6 Pseudomurein-binding repeat Transglut_core PF01841.19 gi|304314568|ref|YP_003849715.1| - 2e-25 89.4 1.3 3.9e-25 88.5 1.3 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Peptidase_C71 PF12386.8 gi|304314568|ref|YP_003849715.1| - 6e-09 35.7 0.4 1.2e-08 34.7 0.4 1.5 1 0 0 1 1 1 1 Pseudomurein endo-isopeptidase Pei DUF553 PF04473.12 gi|304314568|ref|YP_003849715.1| - 0.00013 21.6 0.5 0.0054 16.3 0.4 3.5 2 1 0 2 2 2 1 Transglutaminase-like domain Transglut_core3 PF13471.6 gi|304314568|ref|YP_003849715.1| - 0.011 15.6 0.2 0.028 14.3 0.2 1.6 1 0 0 1 1 1 0 Transglutaminase-like superfamily FliMN_C PF01052.20 gi|304314568|ref|YP_003849715.1| - 0.14 12.1 0.3 22 5.1 0.0 2.4 2 0 0 2 2 2 0 Type III flagellar switch regulator (C-ring) FliN C-term Putative_PNPOx PF01243.20 gi|304314569|ref|YP_003849716.1| - 4.2e-15 55.7 0.0 5.2e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.12 gi|304314569|ref|YP_003849716.1| - 0.0053 16.5 0.0 0.0058 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Asn_synthase PF00733.21 gi|304314570|ref|YP_003849717.1| - 3.7e-55 188.0 2.0 2.8e-34 119.4 0.8 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_7 PF13537.6 gi|304314570|ref|YP_003849717.1| - 6.6e-12 45.4 0.0 3.8e-10 39.7 0.0 2.5 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|304314570|ref|YP_003849717.1| - 1.7e-10 41.2 0.9 7.2e-10 39.2 0.2 2.2 2 1 0 2 2 2 1 Glutamine amidotransferase domain NAD_synthase PF02540.17 gi|304314570|ref|YP_003849717.1| - 0.00034 19.8 0.1 0.0026 16.9 0.1 2.0 2 0 0 2 2 2 1 NAD synthase QueC PF06508.13 gi|304314570|ref|YP_003849717.1| - 0.021 14.3 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Glu-tRNAGln PF02686.15 gi|304314571|ref|YP_003849718.1| - 5.8e-05 23.3 3.8 0.0001 22.5 3.8 1.4 1 1 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Kinesin_assoc PF16183.5 gi|304314571|ref|YP_003849718.1| - 0.039 14.1 0.5 0.056 13.6 0.5 1.3 1 1 0 1 1 1 0 Kinesin-associated DrrA_P4M PF14860.6 gi|304314571|ref|YP_003849718.1| - 0.051 13.4 0.1 0.059 13.2 0.1 1.1 1 0 0 1 1 1 0 DrrA phosphatidylinositol 4-phosphate binding domain DUF3659 PF12396.8 gi|304314571|ref|YP_003849718.1| - 0.065 13.2 0.1 0.081 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) DUF4264 PF14084.6 gi|304314571|ref|YP_003849718.1| - 0.07 12.8 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4264) ACT PF01842.25 gi|304314572|ref|YP_003849719.1| - 3.6e-08 33.0 1.0 0.0001 22.0 0.0 2.5 1 1 2 3 3 3 2 ACT domain ACT_6 PF13740.6 gi|304314572|ref|YP_003849719.1| - 0.057 13.4 0.7 4.5 7.3 0.2 2.8 2 1 1 3 3 3 0 ACT domain ACT_4 PF13291.6 gi|304314572|ref|YP_003849719.1| - 0.074 13.7 0.0 0.53 10.9 0.0 2.3 1 1 2 3 3 3 0 ACT domain Homoserine_dh PF00742.19 gi|304314573|ref|YP_003849720.1| - 1.5e-51 174.8 0.2 2e-51 174.3 0.2 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|304314573|ref|YP_003849720.1| - 8.9e-08 32.8 0.0 1.9e-07 31.7 0.0 1.6 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|304314573|ref|YP_003849720.1| - 0.00011 22.0 0.0 0.00024 20.9 0.0 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PhosphMutase PF10143.9 gi|304314574|ref|YP_003849721.1| - 4.3e-57 192.7 0.0 5.9e-57 192.2 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|304314574|ref|YP_003849721.1| - 2.4e-48 164.7 0.0 2.9e-48 164.4 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|304314574|ref|YP_003849721.1| - 0.0045 16.6 0.0 0.013 15.1 0.0 1.7 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase CTP_synth_N PF06418.14 gi|304314575|ref|YP_003849722.1| - 1.1e-125 418.3 0.2 1.4e-125 418.0 0.2 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|304314575|ref|YP_003849722.1| - 8.8e-57 191.9 0.0 1.4e-56 191.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|304314575|ref|YP_003849722.1| - 1.6e-11 44.3 0.0 9.9e-11 41.8 0.0 2.2 2 1 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|304314575|ref|YP_003849722.1| - 0.00065 19.4 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|304314575|ref|YP_003849722.1| - 0.0035 17.4 0.0 0.0069 16.4 0.0 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain SNO PF01174.19 gi|304314575|ref|YP_003849722.1| - 0.03 14.2 0.0 3.9 7.3 0.0 2.4 2 0 0 2 2 2 0 SNO glutamine amidotransferase family YajC PF02699.15 gi|304314575|ref|YP_003849722.1| - 0.57 10.1 0.0 0.57 10.1 0.0 2.3 3 0 0 3 3 3 0 Preprotein translocase subunit Arc_PepC PF06819.11 gi|304314578|ref|YP_003849725.1| - 7.2e-39 132.4 0.0 1.5e-38 131.4 0.0 1.5 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain Peptidase_A24 PF01478.18 gi|304314578|ref|YP_003849725.1| - 2.7e-15 56.7 5.7 2.7e-15 56.7 5.7 3.2 2 1 1 3 3 3 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|304314578|ref|YP_003849725.1| - 2.8e-06 27.8 0.1 9.6e-05 22.8 0.0 2.6 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Class_IIIsignal PF04021.12 gi|304314579|ref|YP_003849726.1| - 1.1e-07 31.6 1.8 2e-07 30.7 1.8 1.5 1 0 0 1 1 1 1 Class III signal peptide Tad PF13400.6 gi|304314579|ref|YP_003849726.1| - 0.11 12.9 10.4 15 6.0 10.4 2.3 1 1 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like DUF2101 PF09874.9 gi|304314580|ref|YP_003849727.1| - 2.4e-74 249.5 8.6 3.1e-74 249.2 8.6 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2101) DUF2244 PF10003.9 gi|304314580|ref|YP_003849727.1| - 0.012 15.2 1.1 0.012 15.2 1.1 2.9 3 0 0 3 3 3 0 Integral membrane protein (DUF2244) Apolipoprotein PF01442.18 gi|304314580|ref|YP_003849727.1| - 0.067 13.1 0.3 0.098 12.5 0.3 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain TNFR_16_TM PF18422.1 gi|304314580|ref|YP_003849727.1| - 1.2 9.2 5.9 0.66 10.0 0.2 2.7 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain Class_IIIsignal PF04021.12 gi|304314581|ref|YP_003849728.1| - 0.00025 20.9 4.8 0.00045 20.1 4.8 1.4 1 0 0 1 1 1 1 Class III signal peptide SPC12 PF06645.13 gi|304314581|ref|YP_003849728.1| - 0.03 14.4 0.2 0.044 13.9 0.2 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF2808 PF10989.8 gi|304314581|ref|YP_003849728.1| - 0.059 13.3 0.0 0.079 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2808) DUF2897 PF11446.8 gi|304314581|ref|YP_003849728.1| - 2.1 8.3 4.4 3.3 7.7 4.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2897) Rieske_2 PF13806.6 gi|304314583|ref|YP_003849730.1| - 0.12 12.3 0.0 7 6.6 0.0 2.4 2 0 0 2 2 2 0 Rieske-like [2Fe-2S] domain SseC PF04888.12 gi|304314584|ref|YP_003849731.1| - 0.096 12.3 0.5 0.13 11.9 0.5 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family YPEB PF14620.6 gi|304314586|ref|YP_003849733.1| - 0.11 11.9 0.1 0.14 11.5 0.1 1.1 1 0 0 1 1 1 0 YpeB sporulation DUF4183 PF13799.6 gi|304314587|ref|YP_003849734.1| - 0.012 15.4 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4183) CitMHS PF03600.16 gi|304314587|ref|YP_003849734.1| - 0.014 14.6 0.8 0.019 14.1 0.8 1.1 1 0 0 1 1 1 0 Citrate transporter GNVR PF13807.6 gi|304314587|ref|YP_003849734.1| - 0.9 9.5 0.0 0.9 9.5 0.0 2.5 2 1 1 3 3 3 0 G-rich domain on putative tyrosine kinase Diphthami_syn_2 PF01902.17 gi|304314588|ref|YP_003849735.1| - 3.4e-105 350.4 0.1 3.8e-105 350.2 0.1 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|304314588|ref|YP_003849735.1| - 0.12 11.8 0.0 0.24 10.9 0.0 1.5 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC NIR_SIR_ferr PF03460.17 gi|304314588|ref|YP_003849735.1| - 0.18 11.7 0.1 0.88 9.5 0.0 2.1 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain RNA_binding PF01877.17 gi|304314589|ref|YP_003849736.1| - 3.5e-12 46.7 0.1 7.2e-12 45.6 0.1 1.6 1 1 0 1 1 1 1 RNA binding AAA_17 PF13207.6 gi|304314590|ref|YP_003849737.1| - 2.4e-15 57.2 0.2 4.1e-15 56.4 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|304314590|ref|YP_003849737.1| - 4.4e-10 40.2 0.1 6e-10 39.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|304314590|ref|YP_003849737.1| - 5.4e-05 23.3 0.0 6.7e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|304314590|ref|YP_003849737.1| - 0.00041 20.5 0.0 0.0006 20.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|304314590|ref|YP_003849737.1| - 0.014 15.1 0.1 0.032 13.9 0.0 1.7 2 0 0 2 2 2 0 Dephospho-CoA kinase ATP_bind_2 PF03668.15 gi|304314590|ref|YP_003849737.1| - 0.044 13.1 1.2 0.052 12.8 0.5 1.5 2 0 0 2 2 2 0 P-loop ATPase protein family P-mevalo_kinase PF04275.14 gi|304314590|ref|YP_003849737.1| - 0.05 13.6 0.0 0.18 11.8 0.0 2.0 1 1 1 2 2 2 0 Phosphomevalonate kinase PGM_PMM_II PF02879.16 gi|304314590|ref|YP_003849737.1| - 0.15 12.7 0.0 0.53 10.9 0.0 1.9 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PPS_PS PF02006.16 gi|304314591|ref|YP_003849738.1| - 8.2e-74 247.0 0.5 1e-73 246.7 0.5 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase RTT107_BRCT_6 PF16771.5 gi|304314591|ref|YP_003849738.1| - 0.085 13.0 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Regulator of Ty1 transposition protein 107 BRCT domain DUF1129 PF06570.11 gi|304314592|ref|YP_003849739.1| - 0.088 12.3 0.1 0.1 12.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2207 PF09972.9 gi|304314592|ref|YP_003849739.1| - 0.15 10.8 0.2 0.16 10.7 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Peptidase_M42 PF05343.14 gi|304314593|ref|YP_003849740.1| - 2.5e-111 371.4 1.3 2.9e-111 371.2 1.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|304314593|ref|YP_003849740.1| - 0.00016 21.5 0.1 0.00028 20.6 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|304314593|ref|YP_003849740.1| - 0.01 15.6 0.0 2 8.1 0.0 2.5 2 1 0 2 2 2 0 Peptidase family M28 DpnD-PcfM PF14207.6 gi|304314593|ref|YP_003849740.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 DpnD/PcfM-like protein Phage_AlpA PF05930.12 gi|304314594|ref|YP_003849741.1| - 0.019 14.8 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) ATPase PF06745.13 gi|304314595|ref|YP_003849742.1| - 5.1e-65 219.0 1.7 5.8e-65 218.9 1.7 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|304314595|ref|YP_003849742.1| - 6.9e-09 35.5 0.1 6.6e-08 32.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|304314595|ref|YP_003849742.1| - 1.1e-07 31.6 0.2 2.1e-07 30.7 0.2 1.5 1 0 0 1 1 1 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.17 gi|304314595|ref|YP_003849742.1| - 4e-06 26.7 0.3 0.00025 20.8 0.0 2.4 2 1 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|304314595|ref|YP_003849742.1| - 7.5e-06 25.5 0.0 1.3e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|304314595|ref|YP_003849742.1| - 3.2e-05 23.8 0.1 6e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|304314595|ref|YP_003849742.1| - 0.00038 20.9 0.0 0.00066 20.1 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 gi|304314595|ref|YP_003849742.1| - 0.00041 19.7 0.0 0.00056 19.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|304314595|ref|YP_003849742.1| - 0.0014 18.9 0.3 0.012 15.9 0.3 2.1 1 1 0 1 1 1 1 AAA domain MEDS PF14417.6 gi|304314595|ref|YP_003849742.1| - 0.0015 18.4 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain NTPase_1 PF03266.15 gi|304314595|ref|YP_003849742.1| - 0.0017 18.3 0.2 0.0024 17.8 0.2 1.3 1 0 0 1 1 1 1 NTPase CbiA PF01656.23 gi|304314595|ref|YP_003849742.1| - 0.0042 17.1 0.4 0.032 14.3 0.4 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GvpD PF07088.11 gi|304314595|ref|YP_003849742.1| - 0.0064 15.2 0.7 0.017 13.8 0.7 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein MipZ PF09140.11 gi|304314595|ref|YP_003849742.1| - 0.0089 15.3 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ DLIC PF05783.11 gi|304314595|ref|YP_003849742.1| - 0.0099 14.7 0.0 0.014 14.3 0.0 1.1 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) PhoH PF02562.16 gi|304314595|ref|YP_003849742.1| - 0.01 15.3 0.7 0.04 13.4 0.1 2.1 3 0 0 3 3 3 0 PhoH-like protein NACHT PF05729.12 gi|304314595|ref|YP_003849742.1| - 0.012 15.5 0.2 0.035 14.0 0.1 1.7 2 0 0 2 2 2 0 NACHT domain DEAD PF00270.29 gi|304314595|ref|YP_003849742.1| - 0.016 15.0 0.5 0.036 13.8 0.5 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase ATPase_2 PF01637.18 gi|304314595|ref|YP_003849742.1| - 0.027 14.4 0.3 0.12 12.2 0.3 1.8 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea CobU PF02283.16 gi|304314595|ref|YP_003849742.1| - 0.043 13.4 0.1 0.74 9.4 0.0 2.1 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ArsA_ATPase PF02374.15 gi|304314595|ref|YP_003849742.1| - 0.044 13.0 0.2 0.13 11.4 0.1 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase AAA PF00004.29 gi|304314595|ref|YP_003849742.1| - 0.087 13.2 0.2 0.17 12.3 0.2 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MetOD1 PF18546.1 gi|304314596|ref|YP_003849743.1| - 2.1e-54 183.7 0.0 2.4e-54 183.5 0.0 1.0 1 0 0 1 1 1 1 Metanogen output domain 1 LAGLIDADG_3 PF14528.6 gi|304314596|ref|YP_003849743.1| - 0.058 13.7 0.1 3.9 7.9 0.0 2.4 1 1 1 2 2 2 0 LAGLIDADG-like domain Response_reg PF00072.24 gi|304314597|ref|YP_003849744.1| - 4.5e-24 84.8 0.1 8.1e-24 83.9 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|304314597|ref|YP_003849744.1| - 3.1e-15 56.2 0.0 5.6e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|304314597|ref|YP_003849744.1| - 1.1e-10 41.3 0.0 2.4e-10 40.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|304314597|ref|YP_003849744.1| - 2.2e-09 37.6 0.0 3.7e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|304314597|ref|YP_003849744.1| - 3e-08 33.9 0.0 4.9e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 PAS domain B12-binding PF02310.19 gi|304314597|ref|YP_003849744.1| - 0.072 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain PAS_12 PF18095.1 gi|304314597|ref|YP_003849744.1| - 0.089 12.4 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain UvrC_HhH_N PF08459.11 gi|304314598|ref|YP_003849745.1| - 1e-43 148.9 0.0 1.9e-42 144.8 0.0 2.2 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal UVR PF02151.19 gi|304314598|ref|YP_003849745.1| - 4.8e-11 42.0 5.5 1.1e-10 40.9 5.5 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.24 gi|304314598|ref|YP_003849745.1| - 5.1e-11 42.7 0.2 1.3e-10 41.4 0.2 1.7 1 0 0 1 1 1 1 GIY-YIG catalytic domain HHH_2 PF12826.7 gi|304314598|ref|YP_003849745.1| - 2.5e-10 40.3 0.0 8.4e-10 38.6 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|304314598|ref|YP_003849745.1| - 3.8e-09 37.0 0.0 9.7e-09 35.7 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|304314598|ref|YP_003849745.1| - 0.033 14.1 0.0 1.9 8.5 0.0 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif TetR_C_11 PF16859.5 gi|304314598|ref|YP_003849745.1| - 0.044 14.1 1.0 0.11 12.8 0.2 2.2 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain 5_3_exonuc PF01367.20 gi|304314598|ref|YP_003849745.1| - 0.1 13.2 0.0 0.48 11.1 0.0 2.1 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold UvrB_inter PF17757.1 gi|304314599|ref|YP_003849746.1| - 9.3e-34 115.5 0.7 1.4e-32 111.7 0.0 3.0 3 0 0 3 3 3 1 UvrB interaction domain Helicase_C PF00271.31 gi|304314599|ref|YP_003849746.1| - 7.9e-18 64.8 0.1 3.8e-17 62.6 0.0 2.2 1 1 1 2 2 2 1 Helicase conserved C-terminal domain UvrB PF12344.8 gi|304314599|ref|YP_003849746.1| - 1.8e-16 59.7 1.4 4e-16 58.6 1.4 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B UVR PF02151.19 gi|304314599|ref|YP_003849746.1| - 3.1e-12 45.8 3.1 3.1e-12 45.8 3.1 2.5 2 0 0 2 2 2 1 UvrB/uvrC motif ResIII PF04851.15 gi|304314599|ref|YP_003849746.1| - 1.1e-10 41.8 0.0 6.6e-10 39.3 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|304314599|ref|YP_003849746.1| - 0.0013 18.6 0.0 0.0091 15.8 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|304314599|ref|YP_003849746.1| - 0.0019 18.0 0.0 0.11 12.2 0.0 2.8 3 1 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|304314599|ref|YP_003849746.1| - 0.012 16.0 0.1 5.1 7.4 0.0 3.0 3 1 0 3 3 3 0 AAA domain Kinesin PF00225.23 gi|304314599|ref|YP_003849746.1| - 0.04 12.8 0.0 0.091 11.7 0.0 1.5 1 0 0 1 1 1 0 Kinesin motor domain FlaG PF03646.15 gi|304314599|ref|YP_003849746.1| - 0.095 12.9 0.7 0.42 10.8 0.2 2.3 2 0 0 2 2 2 0 FlaG protein AAA PF00004.29 gi|304314599|ref|YP_003849746.1| - 0.12 12.8 0.0 1.3 9.4 0.0 2.8 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|304314599|ref|YP_003849746.1| - 0.2 11.9 1.3 0.68 10.2 0.0 2.6 4 0 0 4 4 4 0 AAA domain DUF87 PF01935.17 gi|304314599|ref|YP_003849746.1| - 0.91 9.6 0.0 0.91 9.6 0.0 2.5 4 0 0 4 4 4 0 Helicase HerA, central domain CdvA PF18822.1 gi|304314599|ref|YP_003849746.1| - 2.2 8.1 12.1 0.11 12.3 1.6 2.9 2 0 0 2 2 2 0 CdvA-like coiled-coil domain UvrA_inter PF17760.1 gi|304314600|ref|YP_003849747.1| - 1.6e-41 140.8 1.1 3.8e-41 139.6 0.6 2.0 2 0 0 2 2 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|304314600|ref|YP_003849747.1| - 5.1e-40 136.3 0.1 6.5e-38 129.5 0.0 3.5 4 0 0 4 4 3 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|304314600|ref|YP_003849747.1| - 4.8e-20 72.5 0.0 2.7e-09 37.7 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|304314600|ref|YP_003849747.1| - 8.7e-11 41.7 0.0 0.14 11.6 0.0 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|304314600|ref|YP_003849747.1| - 1.9e-07 30.7 0.0 0.011 15.5 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain BCA_ABC_TP_C PF12399.8 gi|304314600|ref|YP_003849747.1| - 7.6e-07 28.9 1.7 0.0046 16.8 0.1 2.6 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter AAA_16 PF13191.6 gi|304314600|ref|YP_003849747.1| - 1e-06 29.2 0.0 0.058 13.8 0.0 2.9 2 0 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|304314600|ref|YP_003849747.1| - 1.6e-06 28.1 0.0 0.014 15.3 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_22 PF13401.6 gi|304314600|ref|YP_003849747.1| - 5.8e-06 26.6 0.2 0.17 12.2 0.0 3.6 4 0 0 4 4 3 2 AAA domain AAA_23 PF13476.6 gi|304314600|ref|YP_003849747.1| - 2.1e-05 25.1 3.6 0.017 15.6 0.1 3.0 3 1 0 3 3 2 2 AAA domain DnaJ_CXXCXGXG PF00684.19 gi|304314600|ref|YP_003849747.1| - 2.9e-05 24.3 1.9 0.19 12.1 0.1 3.6 3 0 0 3 3 3 1 DnaJ central domain AAA_18 PF13238.6 gi|304314600|ref|YP_003849747.1| - 4.5e-05 24.0 0.1 0.27 11.8 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|304314600|ref|YP_003849747.1| - 0.00038 20.1 0.0 1.3 8.6 0.0 3.2 3 0 0 3 3 3 2 AAA domain ATPase PF06745.13 gi|304314600|ref|YP_003849747.1| - 0.00039 19.9 0.0 0.18 11.1 0.0 2.6 2 0 0 2 2 2 1 KaiC AAA_33 PF13671.6 gi|304314600|ref|YP_003849747.1| - 0.00055 20.1 0.1 0.39 10.9 0.0 3.4 4 0 0 4 4 3 1 AAA domain AAA_14 PF13173.6 gi|304314600|ref|YP_003849747.1| - 0.0007 19.6 0.0 2.2 8.3 0.0 3.3 3 0 0 3 3 3 1 AAA domain ATPase_2 PF01637.18 gi|304314600|ref|YP_003849747.1| - 0.00099 19.1 0.1 0.99 9.3 0.0 2.7 3 0 0 3 3 2 1 ATPase domain predominantly from Archaea AAA_15 PF13175.6 gi|304314600|ref|YP_003849747.1| - 0.0018 18.1 0.2 12 5.5 0.0 3.9 4 0 0 4 4 4 0 AAA ATPase domain cobW PF02492.19 gi|304314600|ref|YP_003849747.1| - 0.0021 17.7 0.1 0.24 11.0 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.20 gi|304314600|ref|YP_003849747.1| - 0.0023 17.9 0.1 3.6 7.5 0.0 3.0 3 0 0 3 3 3 1 Adenylylsulphate kinase DUF2075 PF09848.9 gi|304314600|ref|YP_003849747.1| - 0.003 16.9 0.1 1.9 7.7 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|304314600|ref|YP_003849747.1| - 0.0044 16.8 0.0 0.42 10.3 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.6 gi|304314600|ref|YP_003849747.1| - 0.0054 16.5 0.3 3.8 7.2 0.0 3.2 3 0 0 3 3 3 1 AAA domain NACHT PF05729.12 gi|304314600|ref|YP_003849747.1| - 0.0084 16.0 0.0 1.1 9.2 0.0 2.6 3 0 0 3 3 2 1 NACHT domain Zn-ribbon_8 PF09723.10 gi|304314600|ref|YP_003849747.1| - 0.014 15.5 0.7 0.014 15.5 0.7 3.8 4 0 0 4 4 4 0 Zinc ribbon domain AAA_21 PF13304.6 gi|304314600|ref|YP_003849747.1| - 0.022 14.6 12.0 1.7 8.4 0.0 4.8 5 0 0 5 5 5 0 AAA domain, putative AbiEii toxin, Type IV TA system MMR_HSR1 PF01926.23 gi|304314600|ref|YP_003849747.1| - 0.027 14.6 0.1 2.1 8.5 0.0 2.9 3 0 0 3 3 2 0 50S ribosome-binding GTPase RNA12 PF10443.9 gi|304314600|ref|YP_003849747.1| - 0.038 12.7 0.0 1.4 7.6 0.0 2.1 2 0 0 2 2 2 0 RNA12 protein T2SSE PF00437.20 gi|304314600|ref|YP_003849747.1| - 0.062 12.3 0.1 10 5.1 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|304314600|ref|YP_003849747.1| - 0.075 12.7 0.1 5.4 6.7 0.0 3.0 4 0 0 4 4 3 0 AAA domain AAA_7 PF12775.7 gi|304314600|ref|YP_003849747.1| - 0.076 12.5 0.0 7.5 6.0 0.0 2.9 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|304314600|ref|YP_003849747.1| - 0.087 13.1 0.0 12 6.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|304314600|ref|YP_003849747.1| - 0.1 11.8 0.0 5.4 6.1 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain SbcCD_C PF13558.6 gi|304314600|ref|YP_003849747.1| - 0.1 12.8 0.3 9 6.6 0.0 3.4 3 1 0 3 3 3 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.15 gi|304314600|ref|YP_003849747.1| - 0.12 12.3 1.3 3.4 7.6 0.0 3.2 3 0 0 3 3 3 0 NTPase RNA_helicase PF00910.22 gi|304314600|ref|YP_003849747.1| - 0.12 12.8 0.0 9.7 6.6 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_17 PF13207.6 gi|304314600|ref|YP_003849747.1| - 0.33 11.4 4.6 0.58 10.6 0.0 3.5 4 1 0 4 4 3 0 AAA domain Rad50_zn_hook PF04423.14 gi|304314600|ref|YP_003849747.1| - 0.37 10.7 6.2 3.3 7.6 0.0 3.9 5 0 0 5 5 3 0 Rad50 zinc hook motif YhfH PF14149.6 gi|304314600|ref|YP_003849747.1| - 1.7 8.7 7.7 6.8 6.8 0.0 3.9 3 1 1 4 4 4 0 YhfH-like protein HATPase_c PF02518.26 gi|304314601|ref|YP_003849748.1| - 3.4e-18 66.2 0.0 6.6e-18 65.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|304314601|ref|YP_003849748.1| - 6e-11 42.2 0.1 1.4e-10 41.1 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|304314601|ref|YP_003849748.1| - 0.00058 19.7 0.0 0.0015 18.4 0.0 1.6 1 0 0 1 1 1 1 GHKL domain ZapB PF06005.12 gi|304314601|ref|YP_003849748.1| - 0.052 14.0 1.4 0.078 13.4 0.3 1.7 2 0 0 2 2 2 0 Cell division protein ZapB CopD PF05425.13 gi|304314601|ref|YP_003849748.1| - 4 7.9 8.0 6 7.3 2.8 2.3 1 1 1 2 2 2 0 Copper resistance protein D Response_reg PF00072.24 gi|304314602|ref|YP_003849749.1| - 6.5e-23 81.0 0.0 7.6e-23 80.8 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HisKA_2 PF07568.12 gi|304314603|ref|YP_003849750.1| - 3.4e-27 94.3 2.3 3.4e-27 94.3 2.3 2.5 3 0 0 3 3 3 1 Histidine kinase Response_reg PF00072.24 gi|304314603|ref|YP_003849750.1| - 3.3e-15 56.2 0.0 7.3e-15 55.1 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|304314603|ref|YP_003849750.1| - 3.6e-13 49.7 0.0 5.5e-05 23.4 0.0 3.1 2 1 0 2 2 2 2 PAS domain PAS PF00989.25 gi|304314603|ref|YP_003849750.1| - 3.7e-11 43.0 0.0 0.0001 22.2 0.0 2.9 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|304314603|ref|YP_003849750.1| - 6.3e-11 42.8 0.6 2e-09 38.0 0.1 3.3 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|304314603|ref|YP_003849750.1| - 1.1e-09 38.6 0.0 0.0012 19.1 0.0 3.0 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|304314603|ref|YP_003849750.1| - 3.2e-08 33.4 0.0 0.00032 20.6 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|304314603|ref|YP_003849750.1| - 2.2e-05 24.4 0.0 5.8e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|304314603|ref|YP_003849750.1| - 0.00011 22.8 0.2 0.00026 21.6 0.2 1.6 1 0 0 1 1 1 1 HWE histidine kinase PAS_3 PF08447.12 gi|304314603|ref|YP_003849750.1| - 0.0031 17.8 0.0 0.011 16.0 0.0 2.0 1 0 0 1 1 1 1 PAS fold MGDG_synth PF06925.11 gi|304314603|ref|YP_003849750.1| - 0.13 12.3 0.0 0.36 10.9 0.0 1.7 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase NT5C PF06941.12 gi|304314603|ref|YP_003849750.1| - 0.14 12.0 0.0 0.56 10.1 0.0 1.9 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) MetOD1 PF18546.1 gi|304314604|ref|YP_003849751.1| - 1.5e-38 132.2 0.0 2e-38 131.8 0.0 1.2 1 0 0 1 1 1 1 Metanogen output domain 1 Response_reg PF00072.24 gi|304314604|ref|YP_003849751.1| - 1e-23 83.6 0.3 1.9e-23 82.8 0.3 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PCAF_N PF06466.11 gi|304314604|ref|YP_003849751.1| - 0.032 13.8 0.0 0.043 13.4 0.0 1.1 1 0 0 1 1 1 0 PCAF (P300/CBP-associated factor) N-terminal domain ATC_hydrolase PF14196.6 gi|304314604|ref|YP_003849751.1| - 0.033 14.9 0.0 0.15 12.8 0.0 2.0 1 1 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase DUF763 PF05559.11 gi|304314605|ref|YP_003849752.1| - 9.1e-128 425.8 0.0 1e-127 425.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Glycos_transf_1 PF00534.20 gi|304314606|ref|YP_003849753.1| - 1.1e-37 129.3 0.0 1.8e-37 128.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|304314606|ref|YP_003849753.1| - 4.1e-30 104.9 0.0 9.8e-30 103.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|304314606|ref|YP_003849753.1| - 1.5e-20 73.9 0.6 2.6e-20 73.1 0.6 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|304314606|ref|YP_003849753.1| - 1.3e-14 54.9 0.0 4e-14 53.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|304314606|ref|YP_003849753.1| - 3e-09 37.0 0.2 6e-09 36.1 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|304314606|ref|YP_003849753.1| - 4.1e-08 33.5 0.0 8.4e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|304314606|ref|YP_003849753.1| - 0.014 14.1 0.0 0.027 13.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 20 Mg_chelatase PF01078.21 gi|304314608|ref|YP_003849755.1| - 8.9e-06 25.2 0.1 2.5e-05 23.8 0.1 1.6 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|304314608|ref|YP_003849755.1| - 6.9e-05 22.9 0.1 8e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|304314608|ref|YP_003849755.1| - 0.023 14.4 0.0 0.029 14.1 0.0 1.1 1 0 0 1 1 1 0 Sigma-54 interaction domain MCM PF00493.23 gi|304314608|ref|YP_003849755.1| - 0.036 13.2 0.0 0.055 12.5 0.0 1.3 1 1 0 1 1 1 0 MCM P-loop domain CobN-Mg_chel PF02514.16 gi|304314609|ref|YP_003849756.1| - 9.5e-17 60.1 0.0 1.1e-16 59.9 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CobN-Mg_chel PF02514.16 gi|304314610|ref|YP_003849757.1| - 3.5e-07 28.4 0.0 3.7e-07 28.3 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase PAS PF00989.25 gi|304314611|ref|YP_003849758.1| - 2.3e-47 159.6 0.3 1.5e-15 57.2 0.0 5.6 5 0 0 5 5 5 5 PAS fold PAS_4 PF08448.10 gi|304314611|ref|YP_003849758.1| - 4.4e-39 133.1 0.0 1.6e-11 44.4 0.0 5.3 4 1 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|304314611|ref|YP_003849758.1| - 6.3e-39 132.4 0.2 1.6e-11 44.4 0.0 5.2 5 1 0 5 5 5 4 PAS domain PAS_8 PF13188.7 gi|304314611|ref|YP_003849758.1| - 1.2e-27 95.4 0.0 1.1e-07 31.8 0.0 5.1 5 0 0 5 5 5 4 PAS domain HisKA_2 PF07568.12 gi|304314611|ref|YP_003849758.1| - 6.3e-27 93.5 2.3 2.1e-26 91.8 2.3 2.0 1 0 0 1 1 1 1 Histidine kinase Response_reg PF00072.24 gi|304314611|ref|YP_003849758.1| - 8.6e-19 67.8 0.0 2.3e-18 66.4 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|304314611|ref|YP_003849758.1| - 3.7e-13 49.6 0.1 3.7e-09 36.7 0.0 3.8 4 0 0 4 4 3 2 PAS fold PAS_7 PF12860.7 gi|304314611|ref|YP_003849758.1| - 2.1e-09 37.6 0.0 0.16 12.1 0.0 5.8 4 2 0 5 5 5 2 PAS fold HATPase_c PF02518.26 gi|304314611|ref|YP_003849758.1| - 6.5e-09 36.3 0.2 3e-08 34.1 0.1 2.2 2 1 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|304314611|ref|YP_003849758.1| - 3.7e-06 27.5 0.0 0.085 13.5 0.0 3.6 2 1 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|304314611|ref|YP_003849758.1| - 7.6e-05 22.7 0.1 0.00035 20.5 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain MLTR_LBD PF17765.1 gi|304314611|ref|YP_003849758.1| - 0.00014 22.0 0.0 0.62 10.2 0.0 2.5 2 0 0 2 2 2 2 MmyB-like transcription regulator ligand binding domain HWE_HK PF07536.14 gi|304314611|ref|YP_003849758.1| - 0.00026 21.6 0.5 0.00067 20.3 0.5 1.7 1 0 0 1 1 1 1 HWE histidine kinase PAS_11 PF14598.6 gi|304314611|ref|YP_003849758.1| - 0.0038 17.3 0.2 0.08 13.1 0.0 3.4 5 0 0 5 5 3 1 PAS domain GAF_2 PF13185.6 gi|304314611|ref|YP_003849758.1| - 0.0044 17.3 0.2 5.6 7.3 0.0 4.3 4 1 1 5 5 5 1 GAF domain GAF_3 PF13492.6 gi|304314611|ref|YP_003849758.1| - 0.066 13.6 0.1 16 5.9 0.0 3.5 4 0 0 4 4 4 0 GAF domain DUF4817 PF16087.5 gi|304314611|ref|YP_003849758.1| - 0.079 12.8 0.1 0.38 10.6 0.1 2.2 1 0 0 1 1 1 0 Helix-turn-helix domain (DUF4817) PEP-utilizers_C PF02896.18 gi|304314612|ref|YP_003849759.1| - 7.2e-54 182.9 0.0 9.7e-54 182.5 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|304314612|ref|YP_003849759.1| - 2.4e-20 72.0 0.3 6.8e-20 70.6 0.3 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain DUF368 PF04018.13 gi|304314613|ref|YP_003849760.1| - 4.7e-71 239.3 19.6 4.7e-71 239.3 19.6 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF368) NERD PF08378.11 gi|304314614|ref|YP_003849761.1| - 1.1e-22 80.5 0.0 2.3e-22 79.5 0.0 1.5 1 0 0 1 1 1 1 Nuclease-related domain SdpI PF13630.6 gi|304314614|ref|YP_003849761.1| - 0.023 14.8 0.9 0.057 13.5 0.9 1.6 1 0 0 1 1 1 0 SdpI/YhfL protein family COX7B PF05392.11 gi|304314614|ref|YP_003849761.1| - 0.027 14.1 0.0 0.053 13.2 0.0 1.4 1 0 0 1 1 1 0 Cytochrome C oxidase chain VIIB DUF4231 PF14015.6 gi|304314614|ref|YP_003849761.1| - 0.06 13.8 0.2 0.51 10.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) HisKA_2 PF07568.12 gi|304314616|ref|YP_003849763.1| - 3e-30 104.1 6.6 6.3e-30 103.1 5.3 2.2 2 0 0 2 2 2 1 Histidine kinase PAS_4 PF08448.10 gi|304314616|ref|YP_003849763.1| - 8.5e-18 64.6 0.7 3.7e-08 33.6 0.1 2.6 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|304314616|ref|YP_003849763.1| - 4.6e-17 62.2 0.4 2.1e-07 31.1 0.0 3.6 3 1 1 4 4 4 2 PAS domain PAS PF00989.25 gi|304314616|ref|YP_003849763.1| - 7.6e-14 51.7 0.0 5.9e-09 35.9 0.0 2.9 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|304314616|ref|YP_003849763.1| - 1.1e-11 44.4 0.1 1.3e-05 25.1 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|304314616|ref|YP_003849763.1| - 1.3e-09 38.2 1.6 4e-09 36.7 0.6 2.4 2 1 1 3 3 3 1 PAS fold HATPase_c PF02518.26 gi|304314616|ref|YP_003849763.1| - 5.1e-09 36.6 0.0 1.4e-08 35.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|304314616|ref|YP_003849763.1| - 1.8e-07 31.8 0.3 3.8e-07 30.7 0.3 1.6 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|304314616|ref|YP_003849763.1| - 2.5e-05 24.2 0.0 5.7e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|304314616|ref|YP_003849763.1| - 7.4e-05 22.9 0.1 0.041 14.0 0.1 3.4 3 1 0 3 3 3 1 PAS fold DUF169 PF02596.15 gi|304314618|ref|YP_003849765.1| - 1.4e-10 41.5 0.0 1.4e-10 41.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 SHOCT PF09851.9 gi|304314619|ref|YP_003849766.1| - 1.1e-05 25.0 2.8 1.1e-05 25.0 2.8 2.4 3 0 0 3 3 3 1 Short C-terminal domain DUF4429 PF14472.6 gi|304314619|ref|YP_003849766.1| - 0.00026 21.5 0.0 0.00047 20.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4429) zinc_ribbon_2 PF13240.6 gi|304314619|ref|YP_003849766.1| - 0.00077 19.1 3.9 0.0013 18.3 3.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|304314619|ref|YP_003849766.1| - 0.0052 16.8 0.8 0.0084 16.1 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon SDA1 PF05285.12 gi|304314619|ref|YP_003849766.1| - 0.024 14.1 0.9 0.034 13.6 0.9 1.2 1 0 0 1 1 1 0 SDA1 UPF0547 PF10571.9 gi|304314619|ref|YP_003849766.1| - 0.035 14.2 1.2 0.055 13.6 1.2 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.11 gi|304314619|ref|YP_003849766.1| - 0.075 13.2 0.9 0.18 12.0 0.9 1.7 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like EzrA PF06160.12 gi|304314619|ref|YP_003849766.1| - 0.12 10.6 1.8 0.15 10.2 1.8 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA zf-ribbon_3 PF13248.6 gi|304314619|ref|YP_003849766.1| - 1.2 8.7 4.1 2.8 7.5 4.1 1.6 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|304314620|ref|YP_003849767.1| - 1.5e-17 63.3 20.5 3.7e-13 49.3 3.0 3.6 2 1 0 3 3 3 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|304314620|ref|YP_003849767.1| - 5.1e-17 61.0 28.8 4.1e-06 26.3 2.7 4.6 5 0 0 5 5 5 3 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|304314620|ref|YP_003849767.1| - 4.2e-10 40.2 21.1 0.0022 18.7 1.6 4.6 4 0 0 4 4 4 3 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|304314620|ref|YP_003849767.1| - 4e-07 29.2 31.3 0.0002 20.6 1.2 4.9 5 0 0 5 5 5 3 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|304314620|ref|YP_003849767.1| - 0.0024 17.8 30.3 0.16 11.9 0.1 7.5 8 1 0 8 8 8 3 Nudix N-terminal zinc-ribbons_6 PF07191.12 gi|304314620|ref|YP_003849767.1| - 0.0061 16.5 19.3 0.27 11.2 6.4 4.4 2 1 1 3 3 3 2 zinc-ribbons UPF0547 PF10571.9 gi|304314620|ref|YP_003849767.1| - 0.0093 16.0 0.4 0.0093 16.0 0.4 5.5 6 0 0 6 6 5 3 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|304314620|ref|YP_003849767.1| - 0.039 14.1 24.3 0.095 12.8 0.6 5.9 3 1 3 6 6 5 0 Zinc ribbon domain Ribosomal_L32p PF01783.23 gi|304314620|ref|YP_003849767.1| - 0.1 12.9 0.5 0.1 12.9 0.5 4.2 2 1 2 4 4 4 0 Ribosomal L32p protein family zinc-ribbon_6 PF10005.9 gi|304314620|ref|YP_003849767.1| - 0.18 12.5 0.6 0.18 12.5 0.6 4.2 2 1 2 4 4 4 0 zinc-ribbon domain zf-TRM13_CCCH PF11722.8 gi|304314620|ref|YP_003849767.1| - 0.52 10.1 0.1 0.52 10.1 0.1 4.4 4 1 1 5 5 5 0 CCCH zinc finger in TRM13 protein HypA PF01155.19 gi|304314620|ref|YP_003849767.1| - 0.74 9.9 21.3 5.9 7.0 1.1 4.2 2 1 2 4 4 4 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|304314620|ref|YP_003849767.1| - 0.89 9.5 24.4 0.94 9.4 0.6 4.8 3 1 1 4 4 4 0 Zinc finger, C3HC4 type (RING finger) tRNA-synt_1g PF09334.11 gi|304314620|ref|YP_003849767.1| - 0.91 8.2 6.8 0.16 10.6 2.0 2.1 1 1 1 2 2 2 0 tRNA synthetases class I (M) PknG_rubred PF16919.5 gi|304314620|ref|YP_003849767.1| - 1.2 9.3 17.6 0.77 9.9 0.5 3.9 2 1 2 4 4 4 0 Protein kinase G rubredoxin domain zf-B_box PF00643.24 gi|304314620|ref|YP_003849767.1| - 1.7 8.9 22.8 23 5.2 0.7 5.4 5 1 0 5 5 5 0 B-box zinc finger Prok-RING_1 PF14446.6 gi|304314620|ref|YP_003849767.1| - 1.9 8.4 24.2 1.6 8.7 0.1 4.9 4 1 1 5 5 5 0 Prokaryotic RING finger family 1 DUF4776 PF16003.5 gi|304314620|ref|YP_003849767.1| - 3.9 6.4 14.0 0.64 8.9 7.6 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4776) zf-RRN7 PF11781.8 gi|304314620|ref|YP_003849767.1| - 4.1 7.2 26.0 0.65 9.7 0.1 6.4 6 0 0 6 6 6 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DHHC PF01529.20 gi|304314620|ref|YP_003849767.1| - 4.4 7.4 15.1 1.8 8.7 0.4 3.5 4 0 0 4 4 4 0 DHHC palmitoyltransferase Peptidase_M48 PF01435.18 gi|304314621|ref|YP_003849768.1| - 4.1e-18 65.9 0.0 1.7e-17 63.8 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|304314621|ref|YP_003849768.1| - 0.00014 21.2 0.2 0.0002 20.7 0.2 1.2 1 0 0 1 1 1 1 BlaR1 peptidase M56 zinc_ribbon_2 PF13240.6 gi|304314621|ref|YP_003849768.1| - 0.00054 19.6 3.5 0.00093 18.8 3.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|304314621|ref|YP_003849768.1| - 0.00095 19.1 0.3 0.0017 18.3 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|304314621|ref|YP_003849768.1| - 0.0012 18.2 1.8 0.0022 17.3 1.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|304314621|ref|YP_003849768.1| - 0.0084 16.8 0.1 0.014 16.1 0.1 1.4 1 0 0 1 1 1 1 zinc-ribbon family Zn_ribbon_recom PF13408.6 gi|304314621|ref|YP_003849768.1| - 0.35 11.4 2.6 7.2 7.2 0.4 2.6 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain CarboxypepD_reg PF13620.6 gi|304314622|ref|YP_003849769.1| - 3.6e-59 197.0 17.0 2.2e-08 34.2 0.0 12.4 12 0 0 12 12 12 10 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|304314622|ref|YP_003849769.1| - 1.5e-23 82.6 0.1 7.9e-05 22.6 0.0 9.8 9 1 1 10 10 10 4 CarboxypepD_reg-like domain Big_1 PF02369.16 gi|304314622|ref|YP_003849769.1| - 2.3e-21 75.6 1.5 0.00023 21.1 0.4 10.0 9 0 0 9 9 9 4 Bacterial Ig-like domain (group 1) SdrD_B PF17210.3 gi|304314622|ref|YP_003849769.1| - 2.1e-14 53.7 9.5 0.0093 16.2 0.0 8.4 10 0 0 10 10 10 3 SdrD B-like domain Invasin_D3 PF09134.10 gi|304314622|ref|YP_003849769.1| - 4.2e-09 36.6 4.3 1.7 9.0 0.1 8.2 8 0 0 8 8 7 2 Invasin, domain 3 MG4 PF17789.1 gi|304314622|ref|YP_003849769.1| - 7.5e-09 35.6 0.0 0.15 12.2 0.0 7.0 7 0 0 7 7 7 1 Macroglobulin domain MG4 Big_5 PF13205.6 gi|304314622|ref|YP_003849769.1| - 5.3e-06 27.1 0.0 0.00085 20.0 0.0 4.1 4 0 0 4 4 4 1 Bacterial Ig-like domain Dioxygenase_C PF00775.21 gi|304314622|ref|YP_003849769.1| - 7.3e-06 25.5 1.2 0.61 9.5 0.0 5.7 7 0 0 7 7 7 2 Dioxygenase DUF4625 PF15418.6 gi|304314622|ref|YP_003849769.1| - 0.0031 17.7 0.3 0.85 9.9 0.0 4.5 5 1 0 5 5 5 1 Domain of unknown function (DUF4625) DUF824 PF05688.11 gi|304314622|ref|YP_003849769.1| - 0.0064 16.3 3.4 8.7 6.3 0.0 4.7 5 0 0 5 5 5 1 Salmonella repeat of unknown function (DUF824) fn3_3 PF14686.6 gi|304314622|ref|YP_003849769.1| - 0.022 14.5 1.1 2.2 8.1 0.1 3.5 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II TTR-52 PF01060.23 gi|304314622|ref|YP_003849769.1| - 0.046 14.4 0.0 26 5.6 0.0 3.7 3 0 0 3 3 3 0 Transthyretin-like family bMG3 PF11974.8 gi|304314622|ref|YP_003849769.1| - 0.047 13.7 0.0 1.2 9.2 0.0 3.3 4 0 0 4 4 4 0 Bacterial alpha-2-macroglobulin MG3 domain CarboxypepD_reg PF13620.6 gi|304314623|ref|YP_003849770.1| - 7.8e-07 29.3 0.0 1.6e-05 25.1 0.1 2.0 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|304314623|ref|YP_003849770.1| - 0.0062 16.5 0.0 0.065 13.2 0.0 2.0 1 1 1 2 2 2 1 CarboxypepD_reg-like domain PEGA PF08308.11 gi|304314623|ref|YP_003849770.1| - 0.0095 15.8 0.0 1.3 9.0 0.0 2.2 2 0 0 2 2 2 2 PEGA domain Big_1 PF02369.16 gi|304314623|ref|YP_003849770.1| - 0.048 13.7 0.2 0.087 12.8 0.2 1.5 1 1 0 1 1 1 0 Bacterial Ig-like domain (group 1) DUF824 PF05688.11 gi|304314623|ref|YP_003849770.1| - 0.064 13.1 0.0 0.15 11.9 0.0 1.6 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) CarboxypepD_reg PF13620.6 gi|304314624|ref|YP_003849771.1| - 2e-22 79.3 1.5 3.3e-13 49.7 0.1 3.3 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|304314624|ref|YP_003849771.1| - 9e-12 44.8 0.1 5.3e-06 26.3 0.0 3.1 3 0 0 3 3 3 3 CarboxypepD_reg-like domain bMG3 PF11974.8 gi|304314624|ref|YP_003849771.1| - 1.6e-05 24.8 0.0 0.025 14.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial alpha-2-macroglobulin MG3 domain SdrD_B PF17210.3 gi|304314624|ref|YP_003849771.1| - 0.00015 21.9 0.8 0.38 11.0 0.0 2.8 3 0 0 3 3 3 2 SdrD B-like domain Big_1 PF02369.16 gi|304314624|ref|YP_003849771.1| - 0.0014 18.6 1.1 1.6 8.8 0.0 2.7 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 1) TTR-52 PF01060.23 gi|304314624|ref|YP_003849771.1| - 0.0019 18.8 0.0 4.7 8.0 0.0 3.3 3 0 0 3 3 3 1 Transthyretin-like family Invasin_D3 PF09134.10 gi|304314624|ref|YP_003849771.1| - 0.0089 16.3 0.5 0.33 11.3 0.2 2.3 2 0 0 2 2 2 1 Invasin, domain 3 DUF1416 PF07210.12 gi|304314624|ref|YP_003849771.1| - 0.019 14.8 0.0 0.34 10.8 0.0 2.5 2 1 0 3 3 3 0 Protein of unknown function (DUF1416) phage_tail_N PF08400.10 gi|304314624|ref|YP_003849771.1| - 0.021 14.8 0.4 4.1 7.4 0.1 2.4 1 1 1 2 2 2 0 Prophage tail fibre N-terminal PEGA PF08308.11 gi|304314624|ref|YP_003849771.1| - 0.075 12.9 0.2 0.18 11.7 0.2 1.6 1 0 0 1 1 1 0 PEGA domain MG4 PF17789.1 gi|304314624|ref|YP_003849771.1| - 0.15 12.2 0.0 7 6.9 0.0 2.6 3 0 0 3 3 3 0 Macroglobulin domain MG4 DUF1232 PF06803.12 gi|304314625|ref|YP_003849772.1| - 6.2e-09 35.5 0.5 9.5e-09 34.9 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1232) Peptidase_M3_N PF08439.10 gi|304314625|ref|YP_003849772.1| - 0.12 12.7 0.4 0.44 10.8 0.1 1.9 2 0 0 2 2 2 0 Oligopeptidase F UvrD-helicase PF00580.21 gi|304314626|ref|YP_003849773.1| - 1.8e-71 241.3 0.0 2.6e-70 237.4 0.0 2.2 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|304314626|ref|YP_003849773.1| - 1e-52 179.7 0.0 1.7e-52 179.0 0.0 1.4 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|304314626|ref|YP_003849773.1| - 2.4e-33 115.5 0.0 4.1e-33 114.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain PDDEXK_1 PF12705.7 gi|304314626|ref|YP_003849773.1| - 3.8e-21 76.2 0.9 1.4e-20 74.2 0.4 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|304314626|ref|YP_003849773.1| - 1.6e-11 43.9 0.0 0.00024 20.9 0.0 2.7 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|304314626|ref|YP_003849773.1| - 1.7e-07 31.2 0.0 0.00011 22.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|304314626|ref|YP_003849773.1| - 1.6e-05 24.7 0.1 2.3 7.9 0.0 4.3 4 1 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|304314626|ref|YP_003849773.1| - 4.8e-05 23.3 0.0 0.00011 22.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_12 PF13087.6 gi|304314626|ref|YP_003849773.1| - 0.00011 21.9 0.1 0.016 14.8 0.0 3.2 4 0 0 4 4 4 1 AAA domain Cas_Cas4 PF01930.17 gi|304314626|ref|YP_003849773.1| - 0.0022 18.1 0.0 0.0054 16.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF83 TPR_8 PF13181.6 gi|304314626|ref|YP_003849773.1| - 0.064 13.5 0.1 0.3 11.4 0.0 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat ResIII PF04851.15 gi|304314626|ref|YP_003849773.1| - 0.074 13.0 0.0 0.29 11.1 0.0 1.9 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit TPR_6 PF13174.6 gi|304314626|ref|YP_003849773.1| - 0.11 13.2 0.0 4.6 8.1 0.0 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat PBP_GOBP PF01395.22 gi|304314626|ref|YP_003849773.1| - 0.62 10.2 3.6 1.4 9.1 0.8 2.8 3 0 0 3 3 3 0 PBP/GOBP family Zip PF02535.22 gi|304314627|ref|YP_003849774.1| - 8e-18 64.7 20.4 8.9e-12 44.9 13.0 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter DUF1538 PF07556.11 gi|304314627|ref|YP_003849774.1| - 0.0021 17.4 0.1 0.0021 17.4 0.1 2.3 3 0 0 3 3 3 1 Protein of unknown function (DUF1538) Ferritin PF00210.24 gi|304314628|ref|YP_003849775.1| - 3.2e-21 75.8 0.0 3.9e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.6 gi|304314628|ref|YP_003849775.1| - 0.0014 18.8 0.0 0.0018 18.5 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.13 gi|304314628|ref|YP_003849775.1| - 0.06 13.1 0.0 0.13 12.1 0.0 1.4 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Cyt-b5 PF00173.28 gi|304314629|ref|YP_003849776.1| - 8.5e-10 38.6 0.0 9.8e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain TPP_enzyme_N PF02776.18 gi|304314630|ref|YP_003849777.1| - 2.6e-51 173.7 0.2 3e-51 173.4 0.2 1.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Rubredoxin PF00301.20 gi|304314630|ref|YP_003849777.1| - 3.9e-07 30.0 5.8 1.5e-05 24.9 5.8 2.3 1 1 0 1 1 1 1 Rubredoxin HypA PF01155.19 gi|304314630|ref|YP_003849777.1| - 0.035 14.1 0.3 0.35 10.9 0.1 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GCV_T PF01571.21 gi|304314630|ref|YP_003849777.1| - 0.1 11.9 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Aminomethyltransferase folate-binding domain Zn-ribbon_8 PF09723.10 gi|304314630|ref|YP_003849777.1| - 0.13 12.4 1.1 0.25 11.5 1.1 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|304314630|ref|YP_003849777.1| - 0.13 11.9 2.7 4 7.2 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin_2 PF18073.1 gi|304314630|ref|YP_003849777.1| - 0.13 12.0 2.3 1.1 9.0 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain PHD_4 PF16866.5 gi|304314630|ref|YP_003849777.1| - 0.98 9.6 3.9 2.7 8.1 3.9 1.7 1 1 0 1 1 1 0 PHD-finger zf-MIZ PF02891.20 gi|304314630|ref|YP_003849777.1| - 3.6 7.4 4.7 10 5.9 4.9 1.7 1 1 1 2 2 2 0 MIZ/SP-RING zinc finger TPP_enzyme_M PF00205.22 gi|304314631|ref|YP_003849778.1| - 2e-30 105.3 0.1 2.5e-30 105.0 0.1 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain RseA_C PF03873.13 gi|304314631|ref|YP_003849778.1| - 0.099 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Anti sigma-E protein RseA, C-terminal domain CO_dh PF02552.16 gi|304314631|ref|YP_003849778.1| - 0.17 11.7 0.0 0.25 11.1 0.0 1.4 2 0 0 2 2 2 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_C PF02775.21 gi|304314632|ref|YP_003849779.1| - 3.1e-40 137.5 0.0 3.9e-40 137.1 0.0 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC_tran PF00005.27 gi|304314633|ref|YP_003849780.1| - 1.9e-35 122.4 0.0 3.2e-35 121.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|304314633|ref|YP_003849780.1| - 1.2e-18 67.1 0.4 9.7e-18 64.2 0.1 2.7 2 0 0 2 2 2 1 TOBE domain TOBE_2 PF08402.10 gi|304314633|ref|YP_003849780.1| - 1.9e-09 37.5 1.4 2.1e-08 34.2 0.1 2.9 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.6 gi|304314633|ref|YP_003849780.1| - 2.2e-09 37.6 0.1 0.00061 19.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|304314633|ref|YP_003849780.1| - 0.00013 22.1 0.2 0.0014 18.8 0.2 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|304314633|ref|YP_003849780.1| - 0.00026 20.5 0.1 0.0058 16.1 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|304314633|ref|YP_003849780.1| - 0.0019 17.9 0.0 0.0043 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|304314633|ref|YP_003849780.1| - 0.0023 18.2 0.4 0.011 16.0 0.4 2.0 1 1 0 1 1 1 1 AAA domain KdpD PF02702.17 gi|304314633|ref|YP_003849780.1| - 0.0024 17.4 0.1 0.0044 16.5 0.1 1.4 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain AAA_23 PF13476.6 gi|304314633|ref|YP_003849780.1| - 0.0024 18.4 0.0 0.0043 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain TOBE_3 PF12857.7 gi|304314633|ref|YP_003849780.1| - 0.0032 17.3 0.2 0.02 14.8 0.0 2.4 3 0 0 3 3 3 1 TOBE-like domain AAA_30 PF13604.6 gi|304314633|ref|YP_003849780.1| - 0.0064 16.2 0.3 0.071 12.8 0.3 2.2 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|304314633|ref|YP_003849780.1| - 0.0069 16.3 0.0 0.052 13.5 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|304314633|ref|YP_003849780.1| - 0.15 12.2 0.0 0.37 10.9 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase Adeno_IVa2 PF02456.15 gi|304314633|ref|YP_003849780.1| - 0.27 10.0 0.0 0.39 9.5 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_15 PF13175.6 gi|304314633|ref|YP_003849780.1| - 0.31 10.7 0.0 0.46 10.1 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|304314634|ref|YP_003849781.1| - 1.6e-15 57.4 14.1 2.2e-15 56.9 14.0 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|304314635|ref|YP_003849782.1| - 8.5e-27 94.5 0.9 1.1e-26 94.1 0.9 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|304314635|ref|YP_003849782.1| - 1.4e-13 51.2 0.0 3.3e-13 49.9 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|304314635|ref|YP_003849782.1| - 4.1e-07 30.2 1.0 9.4e-05 22.5 1.0 2.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|304314635|ref|YP_003849782.1| - 3.2e-06 26.6 0.0 5.7e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 LysR substrate binding domain Dak1_2 PF13684.6 gi|304314635|ref|YP_003849782.1| - 0.21 10.6 0.1 0.63 9.1 0.0 1.8 2 1 0 2 2 2 0 Dihydroxyacetone kinase family ATP-cone PF03477.16 gi|304314636|ref|YP_003849783.1| - 2.6e-11 43.9 0.7 2.8e-11 43.8 0.7 1.0 1 0 0 1 1 1 1 ATP cone domain DUF2238 PF09997.9 gi|304314637|ref|YP_003849784.1| - 8.7e-05 22.3 0.6 8.7e-05 22.3 0.6 1.9 2 0 0 2 2 2 1 Predicted membrane protein (DUF2238) DUF4231 PF14015.6 gi|304314637|ref|YP_003849784.1| - 0.057 13.9 1.3 2.8 8.4 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4231) DUF4131 PF13567.6 gi|304314637|ref|YP_003849784.1| - 2.9 7.5 6.1 0.45 10.1 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) SirB PF04247.12 gi|304314639|ref|YP_003849786.1| - 0.016 15.3 4.8 0.019 15.0 4.8 1.1 1 0 0 1 1 1 0 Invasion gene expression up-regulator, SirB TssN PF17555.2 gi|304314639|ref|YP_003849786.1| - 0.042 13.2 4.5 0.05 13.0 4.5 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF3522 PF12036.8 gi|304314639|ref|YP_003849786.1| - 0.11 12.8 5.6 0.12 12.6 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3522) DUF2231 PF09990.9 gi|304314639|ref|YP_003849786.1| - 0.11 13.0 4.4 0.13 12.7 4.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) DUF1218 PF06749.12 gi|304314639|ref|YP_003849786.1| - 0.35 11.4 7.3 38 4.9 7.3 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1218) HisKA_2 PF07568.12 gi|304314640|ref|YP_003849787.1| - 3e-28 97.7 4.9 3e-28 97.7 4.9 2.8 4 0 0 4 4 2 1 Histidine kinase PAS_9 PF13426.7 gi|304314640|ref|YP_003849787.1| - 1.1e-20 73.8 0.0 7.4e-13 48.6 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|304314640|ref|YP_003849787.1| - 2.4e-18 66.2 0.0 7.3e-10 38.9 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|304314640|ref|YP_003849787.1| - 2.2e-15 56.9 0.0 5.7e-08 33.0 0.0 3.0 2 1 0 2 2 2 2 PAS fold HisKA_7TM PF16927.5 gi|304314640|ref|YP_003849787.1| - 3.7e-13 50.0 23.2 5.2e-13 49.6 23.2 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_8 PF13188.7 gi|304314640|ref|YP_003849787.1| - 8.5e-11 41.6 0.0 8.7e-07 28.8 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|304314640|ref|YP_003849787.1| - 9.3e-07 29.4 0.0 2.3e-06 28.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|304314640|ref|YP_003849787.1| - 1e-05 26.1 0.2 2.1e-05 25.1 0.2 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_7 PF12860.7 gi|304314640|ref|YP_003849787.1| - 0.00014 22.0 0.0 0.15 12.2 0.0 3.5 2 2 1 3 3 3 1 PAS fold PAS_3 PF08447.12 gi|304314640|ref|YP_003849787.1| - 0.0015 18.7 0.0 0.012 15.9 0.0 2.2 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|304314640|ref|YP_003849787.1| - 0.012 15.6 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_11 PF14598.6 gi|304314640|ref|YP_003849787.1| - 0.024 14.8 0.0 0.049 13.7 0.0 1.5 1 0 0 1 1 1 0 PAS domain PAS_5 PF07310.13 gi|304314640|ref|YP_003849787.1| - 0.037 13.8 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 PAS domain SPOB_a PF14689.6 gi|304314640|ref|YP_003849787.1| - 0.038 13.7 0.2 0.077 12.7 0.2 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF4011 PF13195.6 gi|304314641|ref|YP_003849788.1| - 1.8e-44 151.6 0.1 4.5e-44 150.2 0.1 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF4011) MTES_1575 PF18741.1 gi|304314641|ref|YP_003849788.1| - 2.1e-26 91.9 0.1 5.3e-26 90.6 0.1 1.7 1 0 0 1 1 1 1 REase_MTES_1575 DUF3320 PF11784.8 gi|304314641|ref|YP_003849788.1| - 1.2e-17 63.6 0.3 2.6e-16 59.3 0.2 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3320) AAA_12 PF13087.6 gi|304314641|ref|YP_003849788.1| - 5.5e-15 55.5 0.0 1.6e-14 54.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|304314641|ref|YP_003849788.1| - 4.8e-14 52.8 0.1 6.2e-06 26.2 0.0 3.3 4 0 0 4 4 4 2 AAA domain AAA_30 PF13604.6 gi|304314641|ref|YP_003849788.1| - 4.4e-08 33.1 0.1 0.0003 20.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|304314641|ref|YP_003849788.1| - 4.7e-07 30.3 0.0 0.00073 19.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|304314641|ref|YP_003849788.1| - 8.9e-06 25.2 0.1 0.0016 17.7 0.0 3.1 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|304314641|ref|YP_003849788.1| - 0.00022 21.0 0.1 0.3 10.8 0.0 2.6 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase IstB_IS21 PF01695.17 gi|304314641|ref|YP_003849788.1| - 0.0004 20.2 0.0 0.0009 19.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein RAP PF08373.10 gi|304314641|ref|YP_003849788.1| - 0.0029 17.7 0.0 0.0073 16.4 0.0 1.6 1 0 0 1 1 1 1 RAP domain UvrD-helicase PF00580.21 gi|304314641|ref|YP_003849788.1| - 0.003 17.1 0.0 0.0077 15.8 0.0 1.6 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain ResIII PF04851.15 gi|304314641|ref|YP_003849788.1| - 0.011 15.8 0.0 0.2 11.6 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|304314641|ref|YP_003849788.1| - 0.036 14.4 0.0 0.17 12.2 0.0 2.2 1 0 0 1 1 1 0 AAA ATPase domain Helicase_RecD PF05127.14 gi|304314641|ref|YP_003849788.1| - 0.04 13.8 0.0 1 9.2 0.0 2.4 2 0 0 2 2 2 0 Helicase SelB-wing_2 PF09106.11 gi|304314641|ref|YP_003849788.1| - 0.059 13.6 0.2 10 6.4 0.0 3.9 4 0 0 4 4 3 0 Elongation factor SelB, winged helix FtsK_SpoIIIE PF01580.18 gi|304314641|ref|YP_003849788.1| - 0.077 12.3 0.0 0.21 10.9 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_5 PF07728.14 gi|304314641|ref|YP_003849788.1| - 0.11 12.5 0.0 0.79 9.7 0.0 2.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MeaB PF03308.16 gi|304314641|ref|YP_003849788.1| - 0.13 11.3 0.0 0.29 10.1 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|304314641|ref|YP_003849788.1| - 0.14 12.4 0.0 0.63 10.3 0.0 2.2 2 0 0 2 2 1 0 AAA domain AAA PF00004.29 gi|304314641|ref|YP_003849788.1| - 0.15 12.5 0.0 1.4 9.3 0.0 2.8 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|304314641|ref|YP_003849788.1| - 0.16 11.5 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Adeno_IVa2 PF02456.15 gi|304314641|ref|YP_003849788.1| - 0.18 10.5 0.0 0.35 9.6 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein TPR_MLP1_2 PF07926.12 gi|304314641|ref|YP_003849788.1| - 5.3 7.1 8.0 4.9 7.2 0.2 3.1 3 0 0 3 3 3 0 TPR/MLP1/MLP2-like protein Na_Ala_symp PF01235.17 gi|304314642|ref|YP_003849789.1| - 0.11 11.8 2.5 0.11 11.8 2.5 1.1 1 0 0 1 1 1 0 Sodium:alanine symporter family RNase_H_2 PF13482.6 gi|304314644|ref|YP_003849791.1| - 1e-33 116.7 0.0 1.3e-33 116.3 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.19 gi|304314644|ref|YP_003849791.1| - 0.00031 20.0 0.0 0.00052 19.3 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|304314644|ref|YP_003849791.1| - 0.00086 19.0 0.0 0.0025 17.5 0.0 1.7 1 1 1 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH_5 PF14520.6 gi|304314644|ref|YP_003849791.1| - 0.054 14.1 0.0 0.21 12.2 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain DEAD PF00270.29 gi|304314645|ref|YP_003849792.1| - 3.1e-28 98.7 0.0 5.4e-28 97.9 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|304314645|ref|YP_003849792.1| - 1.9e-21 76.6 0.1 5.8e-21 75.0 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|304314645|ref|YP_003849792.1| - 6.4e-11 42.6 0.0 3.5e-10 40.2 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|304314645|ref|YP_003849792.1| - 6.2e-06 26.3 0.0 9.5e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit TPR_19 PF14559.6 gi|304314645|ref|YP_003849792.1| - 0.05 14.1 0.2 0.12 12.9 0.2 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat T2SSE PF00437.20 gi|304314645|ref|YP_003849792.1| - 0.055 12.5 0.0 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DPPIV_rep PF18811.1 gi|304314645|ref|YP_003849792.1| - 0.067 13.1 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 Dipeptidyl peptidase IV (DPP IV) low complexity region Ribonuc_2-5A PF06479.12 gi|304314645|ref|YP_003849792.1| - 0.1 12.8 0.2 0.5 10.5 0.1 2.1 2 0 0 2 2 2 0 Ribonuclease 2-5A SNase PF00565.17 gi|304314646|ref|YP_003849793.1| - 1.5e-17 64.0 0.0 2.2e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue LPAM_1 PF08139.12 gi|304314646|ref|YP_003849793.1| - 1.9 9.2 4.7 3 8.5 4.7 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF2973 PF11189.8 gi|304314647|ref|YP_003849794.1| - 0.017 15.2 4.5 0.13 12.4 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2973) HTH_5 PF01022.20 gi|304314648|ref|YP_003849795.1| - 0.085 12.7 0.1 0.32 10.9 0.1 2.0 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF5388 PF17363.2 gi|304314649|ref|YP_003849796.1| - 0.00052 20.2 1.1 0.0024 18.1 1.1 2.2 1 0 0 1 1 1 1 Family of unknown function (DUF5388) RGS-like PF09128.11 gi|304314649|ref|YP_003849796.1| - 0.0066 16.2 0.5 0.014 15.1 0.5 1.6 1 1 0 1 1 1 1 Regulator of G protein signalling-like domain LAGLIDADG_1 PF00961.19 gi|304314649|ref|YP_003849796.1| - 0.007 17.3 16.5 0.24 12.4 0.7 4.5 2 2 2 4 4 4 2 LAGLIDADG endonuclease AAA_22 PF13401.6 gi|304314651|ref|YP_003849798.1| - 1.5e-06 28.5 0.1 0.008 16.5 0.0 4.0 3 0 0 3 3 3 1 AAA domain RPAP3_C PF13877.6 gi|304314651|ref|YP_003849798.1| - 0.098 13.2 1.3 1.8 9.1 0.1 3.4 2 0 0 2 2 2 0 Potential Monad-binding region of RPAP3 Med15_fungi PF05397.12 gi|304314651|ref|YP_003849798.1| - 0.13 12.5 3.2 0.16 12.3 0.3 2.8 2 0 0 2 2 2 0 Mediator complex subunit 15 Sec2p PF06428.11 gi|304314651|ref|YP_003849798.1| - 0.3 11.1 8.1 0.061 13.3 1.7 3.3 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p CCDC-167 PF15188.6 gi|304314651|ref|YP_003849798.1| - 5.4 7.4 14.4 9.4 6.7 0.3 4.7 3 0 0 3 3 3 0 Coiled-coil domain-containing protein 167 ANAPC15 PF15243.6 gi|304314651|ref|YP_003849798.1| - 9.4 6.7 7.3 21 5.6 0.6 3.3 2 2 0 2 2 2 0 Anaphase-promoting complex subunit 15 DUF87 PF01935.17 gi|304314652|ref|YP_003849799.1| - 9.5e-24 84.7 0.0 1.3e-23 84.2 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|304314652|ref|YP_003849799.1| - 0.00027 20.0 0.0 0.00081 18.4 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|304314652|ref|YP_003849799.1| - 0.0013 18.1 0.0 0.0041 16.5 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family Reg_prop PF07494.11 gi|304314652|ref|YP_003849799.1| - 0.1 12.9 0.0 0.36 11.2 0.0 2.0 1 0 0 1 1 1 0 Two component regulator propeller PduV-EutP PF10662.9 gi|304314652|ref|YP_003849799.1| - 0.11 12.3 0.0 0.24 11.2 0.0 1.5 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_22 PF13401.6 gi|304314652|ref|YP_003849799.1| - 0.2 12.0 0.0 2.8 8.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain NurA PF09376.10 gi|304314653|ref|YP_003849800.1| - 2.4e-07 30.7 0.2 4.2e-07 29.9 0.1 1.3 1 1 0 1 1 1 1 NurA domain TGT PF01702.18 gi|304314654|ref|YP_003849801.1| - 3.3e-19 69.3 0.0 4.5e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase CDKN3 PF05706.12 gi|304314654|ref|YP_003849801.1| - 0.11 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) Robl_LC7 PF03259.17 gi|304314655|ref|YP_003849802.1| - 6.3e-21 74.0 0.3 8.4e-21 73.5 0.3 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain HMD PF03201.16 gi|304314656|ref|YP_003849803.1| - 1.2e-40 137.7 3.2 2.2e-40 136.8 3.2 1.5 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.15 gi|304314656|ref|YP_003849803.1| - 6.4e-05 23.2 0.3 0.0002 21.6 0.0 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|304314656|ref|YP_003849803.1| - 0.03 14.9 0.1 0.22 12.1 0.0 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent SK_channel PF03530.14 gi|304314656|ref|YP_003849803.1| - 0.15 12.1 0.2 0.64 10.0 0.1 1.9 2 0 0 2 2 2 0 Calcium-activated SK potassium channel Bac_chlorC PF02043.17 gi|304314656|ref|YP_003849803.1| - 0.15 12.1 0.0 24 5.0 0.0 2.5 2 0 0 2 2 2 0 Bacteriochlorophyll C binding protein Ion_trans_2 PF07885.16 gi|304314657|ref|YP_003849804.1| - 2.1e-11 43.6 7.5 2.1e-11 43.6 7.5 2.0 3 0 0 3 3 3 1 Ion channel Ion_trans PF00520.31 gi|304314657|ref|YP_003849804.1| - 1e-07 31.4 9.2 1.3e-07 31.1 9.2 1.2 1 0 0 1 1 1 1 Ion transport protein RIC3 PF15361.6 gi|304314657|ref|YP_003849804.1| - 0.032 14.6 0.1 0.42 11.0 0.0 2.2 2 1 0 2 2 2 0 Resistance to inhibitors of cholinesterase homologue 3 IRK PF01007.20 gi|304314657|ref|YP_003849804.1| - 2.7 7.8 4.9 25 4.6 4.9 2.1 1 1 0 1 1 1 0 Inward rectifier potassium channel transmembrane domain YbjQ_1 PF01906.17 gi|304314658|ref|YP_003849805.1| - 1.3e-09 38.7 1.0 2.9e-09 37.5 1.0 1.6 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF3556 PF12077.8 gi|304314658|ref|YP_003849805.1| - 0.02 13.3 0.4 0.027 12.9 0.4 1.2 1 0 0 1 1 1 0 Transmembrane protein of unknown function (DUF3556) Phage_holin_2_1 PF04971.12 gi|304314658|ref|YP_003849805.1| - 0.5 10.4 6.9 0.71 9.9 0.2 3.0 2 1 0 2 2 2 0 Bacteriophage P21 holin S YbjQ_1 PF01906.17 gi|304314659|ref|YP_003849806.1| - 2.1e-34 118.3 1.4 2.3e-34 118.2 1.4 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding PsbP PF01789.16 gi|304314660|ref|YP_003849807.1| - 7.9e-05 22.8 0.2 0.0011 19.1 0.2 2.1 1 1 0 1 1 1 1 PsbP MSP PF01716.18 gi|304314661|ref|YP_003849808.1| - 0.12 11.6 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Manganese-stabilising protein / photosystem II polypeptide UvrD-helicase PF00580.21 gi|304314662|ref|YP_003849809.1| - 1.2e-72 245.1 0.0 1.8e-71 241.3 0.0 2.4 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|304314662|ref|YP_003849809.1| - 6.8e-66 223.0 0.6 2.2e-65 221.3 0.6 1.9 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|304314662|ref|YP_003849809.1| - 2.2e-34 118.9 0.0 4.2e-34 118.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain PDDEXK_1 PF12705.7 gi|304314662|ref|YP_003849809.1| - 7.4e-24 85.0 0.0 2.2e-23 83.5 0.0 1.9 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|304314662|ref|YP_003849809.1| - 3.4e-10 39.6 0.0 0.0019 18.0 0.0 3.3 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|304314662|ref|YP_003849809.1| - 1.2e-09 38.2 0.0 8.7e-08 32.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.6 gi|304314662|ref|YP_003849809.1| - 7.6e-06 25.7 0.1 0.014 15.0 0.0 3.1 3 0 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.18 gi|304314662|ref|YP_003849809.1| - 4.6e-05 23.3 0.0 1.7 8.3 0.0 4.1 3 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|304314662|ref|YP_003849809.1| - 0.0022 17.9 0.0 0.0044 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain Dna2 PF08696.11 gi|304314662|ref|YP_003849809.1| - 0.0034 17.2 0.0 0.0067 16.3 0.0 1.4 1 0 0 1 1 1 1 DNA replication factor Dna2 AAA_22 PF13401.6 gi|304314662|ref|YP_003849809.1| - 0.076 13.3 0.4 2.9 8.2 0.0 2.7 3 0 0 3 3 2 0 AAA domain AAA_16 PF13191.6 gi|304314662|ref|YP_003849809.1| - 0.11 12.9 0.0 0.31 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain HOOK PF05622.12 gi|304314664|ref|YP_003849811.1| - 0.0028 15.9 0.1 0.0038 15.5 0.1 1.1 1 0 0 1 1 1 1 HOOK protein CobN-Mg_chel PF02514.16 gi|304314665|ref|YP_003849812.1| - 2.6e-227 757.3 0.0 3.3e-227 757.0 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.6 gi|304314665|ref|YP_003849812.1| - 1.3e-06 28.6 2.4 4.4e-06 26.9 2.4 1.9 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|304314665|ref|YP_003849812.1| - 0.011 15.7 0.2 0.034 14.2 0.2 1.8 1 0 0 1 1 1 0 CarboxypepD_reg-like domain DUF3950 PF13132.6 gi|304314665|ref|YP_003849812.1| - 0.67 9.8 2.2 27 4.6 0.2 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3950) AAA_16 PF13191.6 gi|304314666|ref|YP_003849813.1| - 2e-10 41.3 0.0 2.8e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|304314666|ref|YP_003849813.1| - 8.9e-07 29.1 0.0 1.5e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|304314666|ref|YP_003849813.1| - 7.2e-05 22.8 0.0 0.056 13.4 0.0 2.4 2 0 0 2 2 2 2 NACHT domain Zeta_toxin PF06414.12 gi|304314666|ref|YP_003849813.1| - 0.00015 21.1 0.0 0.00022 20.6 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|304314666|ref|YP_003849813.1| - 0.0014 18.9 0.0 0.0026 18.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|304314666|ref|YP_003849813.1| - 0.0043 17.6 0.0 0.0092 16.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|304314666|ref|YP_003849813.1| - 0.0054 16.5 0.0 0.0097 15.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain NB-ARC PF00931.22 gi|304314666|ref|YP_003849813.1| - 0.0088 15.2 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain cobW PF02492.19 gi|304314666|ref|YP_003849813.1| - 0.018 14.6 0.2 0.036 13.6 0.0 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|304314666|ref|YP_003849813.1| - 0.018 14.9 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 gi|304314666|ref|YP_003849813.1| - 0.038 14.0 0.0 0.081 12.9 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|304314666|ref|YP_003849813.1| - 0.042 12.9 0.0 0.12 11.4 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|304314666|ref|YP_003849813.1| - 0.045 14.3 0.0 0.086 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|304314666|ref|YP_003849813.1| - 0.049 14.1 0.0 0.088 13.2 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|304314666|ref|YP_003849813.1| - 0.054 13.2 0.0 0.075 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|304314666|ref|YP_003849813.1| - 0.055 13.2 0.0 0.75 9.6 0.0 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain RNA12 PF10443.9 gi|304314666|ref|YP_003849813.1| - 0.066 11.9 0.0 0.15 10.8 0.0 1.5 2 0 0 2 2 2 0 RNA12 protein KAP_NTPase PF07693.14 gi|304314666|ref|YP_003849813.1| - 0.1 11.8 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_5 PF07728.14 gi|304314666|ref|YP_003849813.1| - 0.15 12.1 0.0 14 5.7 0.0 2.5 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|304314666|ref|YP_003849813.1| - 0.15 11.9 0.1 0.24 11.3 0.1 1.3 1 0 0 1 1 1 0 NTPase AAA_14 PF13173.6 gi|304314666|ref|YP_003849813.1| - 0.18 11.9 0.0 0.4 10.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF1887 PF09002.11 gi|304314667|ref|YP_003849814.1| - 3.1e-07 29.4 0.1 3.9e-07 29.1 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) Cas_APE2256 PF09651.10 gi|304314667|ref|YP_003849814.1| - 7.5e-07 29.1 0.0 1.1e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) HTH_24 PF13412.6 gi|304314667|ref|YP_003849814.1| - 1.1e-06 28.1 0.0 1.8e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Cas_Cas02710 PF09670.10 gi|304314667|ref|YP_003849814.1| - 8.1e-06 24.9 0.1 1.1e-05 24.5 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) HTH_5 PF01022.20 gi|304314667|ref|YP_003849814.1| - 1.1e-05 25.2 0.0 1.8e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|304314667|ref|YP_003849814.1| - 1.2e-05 25.1 0.3 4.3e-05 23.3 0.1 1.9 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB Cas_NE0113 PF09623.10 gi|304314667|ref|YP_003849814.1| - 1.9e-05 24.5 0.1 3.3e-05 23.7 0.1 1.5 1 1 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) HTH_11 PF08279.12 gi|304314667|ref|YP_003849814.1| - 7.6e-05 22.6 0.1 0.00016 21.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|304314667|ref|YP_003849814.1| - 0.00023 21.0 0.1 0.00041 20.2 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|304314667|ref|YP_003849814.1| - 0.00027 20.9 0.0 0.00048 20.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|304314667|ref|YP_003849814.1| - 0.0099 16.0 0.0 0.019 15.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|304314667|ref|YP_003849814.1| - 0.021 14.7 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HxlR PF01638.17 gi|304314667|ref|YP_003849814.1| - 0.028 14.2 0.1 0.055 13.3 0.1 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_Crp_2 PF13545.6 gi|304314667|ref|YP_003849814.1| - 0.044 13.8 0.1 0.095 12.7 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RNase_H_2 PF13482.6 gi|304314667|ref|YP_003849814.1| - 0.13 12.3 0.1 0.82 9.6 0.0 2.1 1 1 2 3 3 3 0 RNase_H superfamily DUF2085 PF09858.9 gi|304314668|ref|YP_003849815.1| - 1.1e-31 109.1 1.7 1.3e-31 108.9 1.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2085) DUF3242 PF11586.8 gi|304314669|ref|YP_003849816.1| - 0.038 13.7 0.0 0.054 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3242) CbtB PF09489.10 gi|304314669|ref|YP_003849816.1| - 0.091 12.9 0.1 0.15 12.2 0.1 1.3 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtB) DUF4064 PF13273.6 gi|304314670|ref|YP_003849817.1| - 2.3e-12 47.1 15.8 2.3e-12 47.1 15.8 2.9 1 1 1 2 2 2 1 Protein of unknown function (DUF4064) Trep_Strep PF09605.10 gi|304314670|ref|YP_003849817.1| - 1.2 9.1 15.0 1.7 8.6 15.0 1.2 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) SseC PF04888.12 gi|304314670|ref|YP_003849817.1| - 2.4 7.7 4.3 3.8 7.0 4.3 1.3 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family DUF2070 PF09843.9 gi|304314670|ref|YP_003849817.1| - 3.4 5.9 7.5 4 5.6 7.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CRPA PF05745.11 gi|304314670|ref|YP_003849817.1| - 5.1 7.1 13.2 1.4 8.9 1.7 2.0 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) zinc_ribbon_2 PF13240.6 gi|304314671|ref|YP_003849818.1| - 1.8e-07 30.6 3.2 3.6e-07 29.7 3.2 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|304314671|ref|YP_003849818.1| - 1.7e-06 27.2 1.3 3.1e-06 26.4 1.3 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|304314671|ref|YP_003849818.1| - 0.00021 21.3 1.5 0.00039 20.4 1.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon Zn_ribbon_17 PF17120.5 gi|304314671|ref|YP_003849818.1| - 0.027 14.1 0.3 0.05 13.2 0.3 1.4 1 0 0 1 1 1 0 Zinc-ribbon, C4HC2 type DUF2116 PF09889.9 gi|304314671|ref|YP_003849818.1| - 0.16 12.0 1.6 0.38 10.8 1.6 1.6 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Tnp_zf-ribbon_2 PF13842.6 gi|304314671|ref|YP_003849818.1| - 0.24 12.2 3.2 0.47 11.3 3.2 1.4 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon zf-C4H2 PF10146.9 gi|304314671|ref|YP_003849818.1| - 0.25 11.6 0.5 0.44 10.8 0.5 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein OrfB_Zn_ribbon PF07282.11 gi|304314671|ref|YP_003849818.1| - 0.42 10.6 7.8 0.069 13.1 2.9 2.1 2 1 1 3 3 3 0 Putative transposase DNA-binding domain zinc_ribbon_15 PF17032.5 gi|304314671|ref|YP_003849818.1| - 0.52 11.1 4.0 1.1 10.0 4.0 1.6 1 0 0 1 1 1 0 zinc-ribbon family Sigma_reg_N PF13800.6 gi|304314671|ref|YP_003849818.1| - 1.5 9.1 4.8 13 6.1 1.1 2.2 1 1 1 2 2 2 0 Sigma factor regulator N-terminal UPF0547 PF10571.9 gi|304314671|ref|YP_003849818.1| - 1.6 8.9 4.7 14 5.8 4.7 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.11 gi|304314671|ref|YP_003849818.1| - 2.9 7.7 7.1 6 6.6 0.3 2.5 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|304314671|ref|YP_003849818.1| - 3.3 7.3 7.5 0.93 9.1 3.3 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|304314671|ref|YP_003849818.1| - 6.3 6.6 7.6 59 3.5 0.7 2.3 1 1 1 2 2 2 0 Rubredoxin metal binding domain PMBR PF09373.10 gi|304314672|ref|YP_003849819.1| - 1.2e-15 56.9 0.0 1.8e-09 37.3 0.0 2.7 3 0 0 3 3 3 2 Pseudomurein-binding repeat Zn-ribbon_8 PF09723.10 gi|304314674|ref|YP_003849821.1| - 0.00068 19.7 0.7 0.28 11.3 0.2 2.1 2 0 0 2 2 2 2 Zinc ribbon domain RNHCP PF12647.7 gi|304314674|ref|YP_003849821.1| - 0.0012 18.8 0.1 0.0014 18.5 0.1 1.1 1 0 0 1 1 1 1 RNHCP domain DUF35_N PF12172.8 gi|304314674|ref|YP_003849821.1| - 0.0023 17.8 2.1 0.076 12.9 0.1 2.1 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.13 gi|304314674|ref|YP_003849821.1| - 0.0041 16.8 3.7 1 9.1 0.4 2.3 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|304314674|ref|YP_003849821.1| - 0.011 15.5 5.0 0.034 13.9 0.7 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribosomal_L32p PF01783.23 gi|304314674|ref|YP_003849821.1| - 0.016 15.4 0.2 5.5 7.3 0.0 2.1 2 0 0 2 2 2 0 Ribosomal L32p protein family RecR PF02132.15 gi|304314674|ref|YP_003849821.1| - 0.018 14.6 0.8 1.7 8.3 0.0 2.1 2 0 0 2 2 2 0 RecR protein Desulfoferrod_N PF06397.12 gi|304314674|ref|YP_003849821.1| - 0.02 14.5 0.9 2.9 7.6 0.1 2.3 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-IS66 PF13005.7 gi|304314674|ref|YP_003849821.1| - 0.046 14.1 1.9 6.1 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.6 gi|304314674|ref|YP_003849821.1| - 0.14 12.1 1.6 6.8 6.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF169 PF02596.15 gi|304314675|ref|YP_003849822.1| - 2.8e-61 207.1 0.1 3.1e-61 206.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 DUF16 PF01519.16 gi|304314676|ref|YP_003849823.1| - 0.0008 19.9 0.6 0.00087 19.7 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF16 XhlA PF10779.9 gi|304314676|ref|YP_003849823.1| - 0.11 12.8 3.6 1.4 9.2 0.1 2.2 2 0 0 2 2 2 0 Haemolysin XhlA NTP_transf_3 PF12804.7 gi|304314677|ref|YP_003849824.1| - 8e-22 78.3 0.3 9.6e-22 78.1 0.3 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|304314677|ref|YP_003849824.1| - 2.7e-05 24.0 0.1 3.5e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|304314677|ref|YP_003849824.1| - 0.0022 17.9 0.0 0.0031 17.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|304314677|ref|YP_003849824.1| - 0.0031 17.2 0.0 0.0034 17.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Glycos_transf_2 PF00535.26 gi|304314677|ref|YP_003849824.1| - 0.056 13.3 0.0 0.079 12.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 VanW PF04294.13 gi|304314678|ref|YP_003849825.1| - 0.07 12.8 0.0 8.4 6.1 0.0 2.3 2 0 0 2 2 2 0 VanW like protein Mur_ligase_M PF08245.12 gi|304314679|ref|YP_003849826.1| - 6.1e-50 169.9 0.0 3.7e-22 79.3 0.0 5.0 3 2 0 3 3 3 2 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|304314679|ref|YP_003849826.1| - 1.8e-21 76.2 0.1 1.6e-09 37.9 0.0 3.8 4 0 0 4 4 4 2 Mur ligase family, glutamate ligase domain 2-Hacid_dh_C PF02826.19 gi|304314679|ref|YP_003849826.1| - 5.9e-06 25.8 0.0 0.13 11.6 0.0 2.8 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|304314679|ref|YP_003849826.1| - 0.00022 21.4 0.1 0.1 12.6 0.2 3.3 2 1 1 3 3 3 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TrkA_N PF02254.18 gi|304314679|ref|YP_003849826.1| - 0.00045 20.4 0.1 0.29 11.4 0.1 2.9 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_2 PF03446.15 gi|304314679|ref|YP_003849826.1| - 0.00083 19.6 0.0 0.07 13.3 0.0 3.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|304314679|ref|YP_003849826.1| - 0.0016 18.0 0.0 1.9 8.1 0.0 3.3 3 0 0 3 3 3 2 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|304314679|ref|YP_003849826.1| - 0.0018 17.6 0.0 0.0097 15.2 0.0 2.2 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|304314679|ref|YP_003849826.1| - 0.004 16.4 0.1 0.56 9.4 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|304314679|ref|YP_003849826.1| - 0.0046 16.3 1.8 3.1 7.1 0.0 3.0 3 0 0 3 3 3 2 ThiF family Pyr_redox PF00070.27 gi|304314679|ref|YP_003849826.1| - 0.005 17.4 0.1 0.93 10.1 0.0 3.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|304314679|ref|YP_003849826.1| - 0.0069 16.9 0.0 0.75 10.3 0.0 2.6 2 0 0 2 2 2 1 XdhC Rossmann domain F420_oxidored PF03807.17 gi|304314679|ref|YP_003849826.1| - 0.011 16.3 0.1 1.7 9.3 0.0 3.5 4 0 0 4 4 2 0 NADP oxidoreductase coenzyme F420-dependent ELFV_dehydrog PF00208.21 gi|304314679|ref|YP_003849826.1| - 0.011 15.5 0.0 0.6 9.8 0.0 2.3 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Epimerase PF01370.21 gi|304314679|ref|YP_003849826.1| - 0.029 13.8 0.0 0.064 12.7 0.0 1.6 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family YjeF_N PF03853.15 gi|304314679|ref|YP_003849826.1| - 0.049 13.5 0.0 13 5.6 0.0 2.9 2 0 0 2 2 2 0 YjeF-related protein N-terminus ApbA PF02558.16 gi|304314679|ref|YP_003849826.1| - 0.051 13.2 0.0 1.6 8.4 0.0 3.1 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|304314679|ref|YP_003849826.1| - 0.065 13.3 0.2 16 5.5 0.0 2.9 3 0 0 3 3 2 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|304314679|ref|YP_003849826.1| - 0.068 12.4 0.1 0.63 9.2 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|304314679|ref|YP_003849826.1| - 0.14 12.4 0.0 40 4.5 0.0 3.1 3 0 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain Zn_Tnp_IS1595 PF12760.7 gi|304314679|ref|YP_003849826.1| - 0.14 12.2 1.5 0.36 10.9 1.5 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain SRP54 PF00448.22 gi|304314679|ref|YP_003849826.1| - 0.32 10.6 2.0 20 4.8 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Mur_ligase_M PF08245.12 gi|304314680|ref|YP_003849827.1| - 5.4e-22 78.7 0.0 1.5e-21 77.3 0.0 1.7 2 0 0 2 2 2 1 Mur ligase middle domain AlaDh_PNT_C PF01262.21 gi|304314680|ref|YP_003849827.1| - 0.045 13.0 0.0 0.27 10.5 0.0 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Mur_ligase_C PF02875.21 gi|304314680|ref|YP_003849827.1| - 0.066 13.5 0.0 1.9 8.8 0.0 3.1 4 0 0 4 4 4 0 Mur ligase family, glutamate ligase domain Oxidored_nitro PF00148.19 gi|304314680|ref|YP_003849827.1| - 0.076 11.7 0.0 0.16 10.6 0.0 1.5 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase NAD_binding_2 PF03446.15 gi|304314680|ref|YP_003849827.1| - 0.078 13.1 0.0 0.19 11.9 0.0 1.7 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase AAA_31 PF13614.6 gi|304314680|ref|YP_003849827.1| - 0.09 12.7 1.0 0.23 11.4 1.0 1.6 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|304314680|ref|YP_003849827.1| - 0.14 12.2 0.8 0.38 10.8 0.8 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF5305 PF17231.2 gi|304314681|ref|YP_003849828.1| - 0.0005 19.6 0.1 0.00063 19.2 0.1 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5305) MAP17 PF15807.5 gi|304314681|ref|YP_003849828.1| - 0.0016 18.7 0.0 0.0019 18.4 0.0 1.1 1 0 0 1 1 1 1 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 EphA2_TM PF14575.6 gi|304314681|ref|YP_003849828.1| - 0.0031 18.3 0.0 0.0037 18.1 0.0 1.1 1 0 0 1 1 1 1 Ephrin type-A receptor 2 transmembrane domain ECSCR PF15820.5 gi|304314681|ref|YP_003849828.1| - 0.0071 16.1 0.1 0.0081 16.0 0.1 1.1 1 0 0 1 1 1 1 Endothelial cell-specific chemotaxis regulator Rax2 PF12768.7 gi|304314681|ref|YP_003849828.1| - 0.01 15.3 0.1 0.013 15.0 0.1 1.0 1 0 0 1 1 1 0 Cortical protein marker for cell polarity MHYT PF03707.16 gi|304314681|ref|YP_003849828.1| - 0.011 15.9 0.2 0.013 15.6 0.2 1.1 1 0 0 1 1 1 0 Bacterial signalling protein N terminal repeat SKG6 PF08693.10 gi|304314681|ref|YP_003849828.1| - 0.012 15.0 5.9 0.016 14.6 5.9 1.2 1 0 0 1 1 1 0 Transmembrane alpha-helix domain TMEM154 PF15102.6 gi|304314681|ref|YP_003849828.1| - 0.013 15.4 0.2 0.014 15.3 0.2 1.1 1 0 0 1 1 1 0 TMEM154 protein family DAP10 PF07213.11 gi|304314681|ref|YP_003849828.1| - 0.015 15.3 0.0 0.018 15.0 0.0 1.1 1 0 0 1 1 1 0 DAP10 membrane protein CD20 PF04103.15 gi|304314681|ref|YP_003849828.1| - 0.018 15.1 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 CD20-like family DUF2254 PF10011.9 gi|304314681|ref|YP_003849828.1| - 0.019 13.8 0.1 0.022 13.6 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF5385 PF17359.2 gi|304314681|ref|YP_003849828.1| - 0.021 14.4 0.0 0.023 14.3 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5385) Stevor PF17410.2 gi|304314681|ref|YP_003849828.1| - 0.026 14.1 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame NICE-3 PF07406.11 gi|304314681|ref|YP_003849828.1| - 0.048 13.7 0.1 0.058 13.4 0.1 1.0 1 0 0 1 1 1 0 NICE-3 protein CcmD PF04995.14 gi|304314681|ref|YP_003849828.1| - 0.054 13.6 0.2 0.084 13.0 0.2 1.2 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) Herpes_gE PF02480.16 gi|304314681|ref|YP_003849828.1| - 0.055 12.2 0.0 0.055 12.2 0.0 1.0 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E BRE1 PF08647.11 gi|304314681|ref|YP_003849828.1| - 0.058 13.5 0.0 0.071 13.2 0.0 1.1 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase VEGFR-2_TMD PF17988.1 gi|304314681|ref|YP_003849828.1| - 0.059 12.8 4.8 0.084 12.3 4.8 1.2 1 0 0 1 1 1 0 VEGFR-2 Transmembrane domain Vpu PF00558.19 gi|304314681|ref|YP_003849828.1| - 0.065 13.0 0.3 0.089 12.6 0.3 1.2 1 0 0 1 1 1 0 Vpu protein DUF4831 PF16115.5 gi|304314681|ref|YP_003849828.1| - 0.075 12.1 0.0 0.079 12.0 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4831) DUF3357 PF11837.8 gi|304314681|ref|YP_003849828.1| - 0.083 13.4 0.0 0.094 13.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) Baculo_11_kDa PF06143.11 gi|304314681|ref|YP_003849828.1| - 0.085 12.4 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Baculovirus 11 kDa family Syndecan PF01034.20 gi|304314681|ref|YP_003849828.1| - 0.096 12.6 0.2 0.13 12.2 0.2 1.2 1 0 0 1 1 1 0 Syndecan domain RskA PF10099.9 gi|304314681|ref|YP_003849828.1| - 0.097 13.0 0.0 0.11 12.8 0.0 1.0 1 0 0 1 1 1 0 Anti-sigma-K factor rskA PMP1_2 PF08114.11 gi|304314681|ref|YP_003849828.1| - 0.1 12.4 2.2 0.14 11.9 2.2 1.1 1 0 0 1 1 1 0 ATPase proteolipid family Holin_BhlA PF10960.8 gi|304314681|ref|YP_003849828.1| - 0.1 12.6 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 BhlA holin family DUF2771 PF10969.8 gi|304314681|ref|YP_003849828.1| - 0.11 12.6 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2771) DUF4446 PF14584.6 gi|304314681|ref|YP_003849828.1| - 0.15 12.1 0.0 0.18 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) Chordopox_A13L PF05961.11 gi|304314681|ref|YP_003849828.1| - 0.15 12.3 0.1 0.2 11.9 0.1 1.2 1 0 0 1 1 1 0 Chordopoxvirus A13L protein CcmH PF03918.14 gi|304314681|ref|YP_003849828.1| - 0.15 11.3 0.1 0.22 10.8 0.0 1.3 1 1 0 1 1 1 0 Cytochrome C biogenesis protein Gram_pos_anchor PF00746.21 gi|304314681|ref|YP_003849828.1| - 0.2 11.6 0.2 0.29 11.1 0.2 1.3 1 0 0 1 1 1 0 LPXTG cell wall anchor motif PMSR PF01625.21 gi|304314683|ref|YP_003849830.1| - 6.6e-69 230.9 0.1 8.1e-69 230.7 0.1 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Vsr PF03852.15 gi|304314683|ref|YP_003849830.1| - 0.048 13.5 0.3 0.38 10.6 0.1 2.2 2 0 0 2 2 2 0 DNA mismatch endonuclease Vsr POR_N PF01855.19 gi|304314684|ref|YP_003849831.1| - 1.4e-61 208.2 0.0 4.3e-61 206.6 0.0 1.8 3 0 0 3 3 3 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|304314684|ref|YP_003849831.1| - 7.5e-23 81.5 0.3 2.3e-22 79.9 0.3 1.8 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|304314684|ref|YP_003849831.1| - 0.0015 18.2 0.0 0.0037 16.9 0.0 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|304314685|ref|YP_003849832.1| - 5.4e-29 101.0 0.1 9.5e-29 100.2 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|304314685|ref|YP_003849832.1| - 4.5e-19 68.3 0.1 9.1e-19 67.4 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal LDcluster4 PF18306.1 gi|304314686|ref|YP_003849833.1| - 0.03 13.9 0.0 0.037 13.6 0.0 1.1 1 0 0 1 1 1 0 SLOG cluster4 family Ribosomal_L3 PF00297.22 gi|304314687|ref|YP_003849834.1| - 0.008 15.2 6.3 0.01 14.9 6.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L3 AAA_23 PF13476.6 gi|304314688|ref|YP_003849835.1| - 1.4e-08 35.5 119.8 5.6e-08 33.5 55.5 7.1 2 1 0 3 3 1 1 AAA domain AAA_15 PF13175.6 gi|304314688|ref|YP_003849835.1| - 1.6e-06 28.1 27.1 1.6e-06 28.1 27.1 3.4 1 1 1 2 2 2 1 AAA ATPase domain Baculo_PEP_C PF04513.12 gi|304314688|ref|YP_003849835.1| - 6.9e-06 26.2 18.6 0.083 12.9 0.0 6.3 1 1 4 7 7 7 2 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_29 PF13555.6 gi|304314688|ref|YP_003849835.1| - 1.4e-05 24.7 0.0 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain GAS PF13851.6 gi|304314688|ref|YP_003849835.1| - 2e-05 24.1 38.0 0.00023 20.6 12.1 6.4 2 2 4 6 6 5 3 Growth-arrest specific micro-tubule binding DUF3584 PF12128.8 gi|304314688|ref|YP_003849835.1| - 2.3e-05 22.2 33.6 2.3e-05 22.2 33.6 3.7 3 1 1 4 4 4 2 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|304314688|ref|YP_003849835.1| - 7.6e-05 21.6 78.7 0.12 11.0 0.0 4.7 1 1 2 4 4 4 3 AAA domain T3SSipB PF16535.5 gi|304314688|ref|YP_003849835.1| - 0.00012 22.6 32.5 0.011 16.2 3.8 5.6 1 1 4 5 5 5 2 Type III cell invasion protein SipB ZapB PF06005.12 gi|304314688|ref|YP_003849835.1| - 0.00036 20.9 9.8 0.00036 20.9 9.8 8.9 4 3 4 8 8 6 2 Cell division protein ZapB AAA_21 PF13304.6 gi|304314688|ref|YP_003849835.1| - 0.00049 20.0 36.5 0.027 14.3 18.1 4.4 2 2 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system FUSC PF04632.12 gi|304314688|ref|YP_003849835.1| - 0.0032 16.1 3.5 0.0037 15.9 0.5 2.3 2 1 0 2 2 2 1 Fusaric acid resistance protein family Spc7 PF08317.11 gi|304314688|ref|YP_003849835.1| - 0.007 15.3 100.2 0.051 12.4 15.3 5.3 3 2 2 5 5 5 2 Spc7 kinetochore protein BORCS8 PF10167.9 gi|304314688|ref|YP_003849835.1| - 0.01 15.8 1.4 0.01 15.8 1.4 5.9 3 2 3 7 7 7 0 BLOC-1-related complex sub-unit 8 Fez1 PF06818.15 gi|304314688|ref|YP_003849835.1| - 0.013 16.0 81.4 0.64 10.4 3.1 5.6 1 1 5 6 6 6 0 Fez1 Tup_N PF08581.10 gi|304314688|ref|YP_003849835.1| - 0.019 15.3 10.8 0.019 15.3 10.8 7.9 4 2 4 8 8 7 0 Tup N-terminal DUF4164 PF13747.6 gi|304314688|ref|YP_003849835.1| - 0.04 14.2 0.4 0.04 14.2 0.4 7.5 6 1 2 8 8 7 0 Domain of unknown function (DUF4164) IFT57 PF10498.9 gi|304314688|ref|YP_003849835.1| - 0.095 11.7 70.1 0.021 13.8 9.4 4.9 2 2 2 5 5 5 0 Intra-flagellar transport protein 57 InvH PF04741.12 gi|304314688|ref|YP_003849835.1| - 0.1 12.5 1.1 0.23 11.4 1.1 1.5 1 0 0 1 1 1 0 InvH outer membrane lipoprotein Exonuc_VII_L PF02601.15 gi|304314688|ref|YP_003849835.1| - 0.11 12.1 55.2 0.078 12.5 12.1 4.3 2 2 2 4 4 4 0 Exonuclease VII, large subunit DUF3450 PF11932.8 gi|304314688|ref|YP_003849835.1| - 0.46 9.7 59.8 0.035 13.4 2.3 6.6 2 2 5 7 7 7 0 Protein of unknown function (DUF3450) UPF0242 PF06785.11 gi|304314688|ref|YP_003849835.1| - 0.57 10.3 90.5 0.3 11.2 10.9 5.3 1 1 3 5 5 5 0 Uncharacterised protein family (UPF0242) N-terminus CENP-F_leu_zip PF10473.9 gi|304314688|ref|YP_003849835.1| - 0.76 9.8 104.1 0.024 14.6 10.6 6.0 2 2 4 6 6 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 LppA PF16708.5 gi|304314688|ref|YP_003849835.1| - 0.78 9.6 4.4 0.41 10.6 0.5 2.7 2 0 0 2 2 2 0 Lipoprotein confined to pathogenic Mycobacterium APG6_N PF17675.1 gi|304314688|ref|YP_003849835.1| - 1 9.9 107.0 0.23 12.0 19.6 6.7 3 2 4 7 7 6 0 Apg6 coiled-coil region Golgin_A5 PF09787.9 gi|304314688|ref|YP_003849835.1| - 1.2 8.5 86.3 1 8.8 22.1 4.7 2 2 2 4 4 4 0 Golgin subfamily A member 5 PI_PP_I PF18363.1 gi|304314688|ref|YP_003849835.1| - 1.5 9.1 16.3 2.9 8.2 0.8 5.4 3 2 2 5 5 5 0 Phosphoinositide phosphatase insertion domain AAA_22 PF13401.6 gi|304314688|ref|YP_003849835.1| - 1.5 9.1 12.3 3.8 7.8 0.1 4.3 5 0 0 5 5 3 0 AAA domain DUF1664 PF07889.12 gi|304314688|ref|YP_003849835.1| - 1.9 8.6 55.4 0.18 11.8 5.9 7.0 2 2 5 7 7 7 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|304314688|ref|YP_003849835.1| - 2.4 8.5 70.1 0.7 10.2 3.3 8.6 3 2 5 9 9 9 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 LPP PF04728.13 gi|304314688|ref|YP_003849835.1| - 4.2 7.8 22.8 30 5.1 0.3 7.3 5 2 2 7 7 6 0 Lipoprotein leucine-zipper EzrA PF06160.12 gi|304314688|ref|YP_003849835.1| - 5.5 5.0 80.6 0.0047 15.2 31.7 3.9 1 1 2 3 3 2 0 Septation ring formation regulator, EzrA PspA_IM30 PF04012.12 gi|304314688|ref|YP_003849835.1| - 6 6.4 55.6 0.067 12.8 4.8 5.5 2 2 2 4 4 4 0 PspA/IM30 family DUF4407 PF14362.6 gi|304314688|ref|YP_003849835.1| - 6.2 6.1 61.7 0.38 10.0 9.9 4.4 1 1 3 4 4 4 0 Domain of unknown function (DUF4407) DUF1843 PF08898.10 gi|304314688|ref|YP_003849835.1| - 6.8 7.3 17.8 30 5.2 0.0 5.7 5 0 0 5 5 4 0 Domain of unknown function (DUF1843) TMPIT PF07851.13 gi|304314688|ref|YP_003849835.1| - 8.3 5.5 66.7 0.025 13.9 8.2 6.0 1 1 6 7 7 7 0 TMPIT-like protein Sec34 PF04136.15 gi|304314688|ref|YP_003849835.1| - 9.2 6.1 50.9 0.38 10.6 10.9 6.5 2 2 5 7 7 7 0 Sec34-like family Metallophos PF00149.28 gi|304314689|ref|YP_003849836.1| - 1.5e-11 45.2 0.0 2.3e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|304314689|ref|YP_003849836.1| - 1.1e-07 32.2 0.0 2e-07 31.4 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF87 PF01935.17 gi|304314690|ref|YP_003849837.1| - 6.6e-31 108.2 0.0 1.1e-30 107.4 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|304314690|ref|YP_003849837.1| - 2.9e-05 23.5 0.0 5.2e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|304314690|ref|YP_003849837.1| - 0.00021 20.4 0.0 0.19 10.6 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|304314690|ref|YP_003849837.1| - 0.019 13.9 0.1 0.41 9.5 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain NurA PF09376.10 gi|304314691|ref|YP_003849838.1| - 1.4e-08 34.7 0.0 2.8e-08 33.8 0.0 1.5 1 1 0 1 1 1 1 NurA domain YbjQ_1 PF01906.17 gi|304314692|ref|YP_003849839.1| - 1.6e-36 125.1 0.6 1.8e-36 124.9 0.6 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding O-ag_pol_Wzy PF14296.6 gi|304314693|ref|YP_003849840.1| - 0.25 9.9 5.2 0.062 12.0 0.2 2.0 2 0 0 2 2 2 0 O-antigen polysaccharide polymerase Wzy DUF499 PF04465.12 gi|304314694|ref|YP_003849841.1| - 1.4e-37 129.1 2.9 2.9e-35 121.4 2.9 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF499) DUF1156 PF06634.12 gi|304314695|ref|YP_003849842.1| - 9.7e-23 80.1 0.1 2.2e-22 78.9 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_11 PF08241.12 gi|304314695|ref|YP_003849842.1| - 7.3e-08 33.0 0.0 0.0092 16.6 0.0 3.4 3 0 0 3 3 3 2 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|304314695|ref|YP_003849842.1| - 7.6e-06 25.7 0.0 0.076 12.6 0.1 2.5 2 0 0 2 2 2 2 Conserved hypothetical protein 95 N6_N4_Mtase PF01555.18 gi|304314695|ref|YP_003849842.1| - 0.00017 21.4 0.0 0.017 14.8 0.0 2.3 2 0 0 2 2 2 1 DNA methylase Methyltransf_25 PF13649.6 gi|304314695|ref|YP_003849842.1| - 0.0003 21.4 0.0 0.98 10.2 0.0 3.5 4 0 0 4 4 4 2 Methyltransferase domain UPF0020 PF01170.18 gi|304314695|ref|YP_003849842.1| - 0.0021 17.8 0.1 1.6 8.4 0.0 3.0 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|304314695|ref|YP_003849842.1| - 0.053 13.2 0.1 0.81 9.3 0.0 2.3 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Helicase_C PF00271.31 gi|304314696|ref|YP_003849843.1| - 4.1e-25 88.3 0.0 9.7e-25 87.1 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF3883 PF13020.6 gi|304314696|ref|YP_003849843.1| - 1e-22 80.0 0.1 2.5e-22 78.7 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) ERCC3_RAD25_C PF16203.5 gi|304314696|ref|YP_003849843.1| - 0.00067 18.9 0.0 0.0015 17.8 0.0 1.5 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C_4 PF13871.6 gi|304314696|ref|YP_003849843.1| - 0.086 12.5 0.0 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain on Strawberry notch homologue YqzE PF14038.6 gi|304314696|ref|YP_003849843.1| - 0.1 12.6 1.7 0.14 12.1 0.5 1.8 2 0 0 2 2 2 0 YqzE-like protein SNF2_N PF00176.23 gi|304314697|ref|YP_003849844.1| - 4.4e-17 61.8 0.0 5e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|304314697|ref|YP_003849844.1| - 1.2e-11 44.9 0.0 1.8e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|304314697|ref|YP_003849844.1| - 2.8e-06 27.2 0.0 5.7e-06 26.2 0.0 1.5 1 1 0 1 1 1 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|304314697|ref|YP_003849844.1| - 6.3e-06 25.7 0.0 9.1e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Helicase_RecD PF05127.14 gi|304314697|ref|YP_003849844.1| - 6.8e-05 22.8 0.0 0.00012 22.0 0.0 1.3 1 0 0 1 1 1 1 Helicase AAA_34 PF13872.6 gi|304314697|ref|YP_003849844.1| - 0.00016 20.7 0.1 0.00082 18.3 0.1 1.8 1 1 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 AAA PF00004.29 gi|304314697|ref|YP_003849844.1| - 0.0011 19.4 1.2 0.012 16.1 0.2 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Flavi_DEAD PF07652.14 gi|304314697|ref|YP_003849844.1| - 0.0035 17.3 0.0 0.0072 16.3 0.0 1.5 1 1 0 1 1 1 1 Flavivirus DEAD domain AAA_19 PF13245.6 gi|304314697|ref|YP_003849844.1| - 0.012 16.0 0.1 0.03 14.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|304314697|ref|YP_003849844.1| - 0.02 13.9 0.0 0.025 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain SWI2_SNF2 PF18766.1 gi|304314697|ref|YP_003849844.1| - 0.027 14.2 0.1 0.044 13.4 0.1 1.3 1 0 0 1 1 1 0 SWI2/SNF2 ATPase RuvB_N PF05496.12 gi|304314697|ref|YP_003849844.1| - 0.094 12.5 0.0 2.9 7.6 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AA_permease_2 PF13520.6 gi|304314698|ref|YP_003849845.1| - 3.5e-51 174.4 44.6 4.2e-51 174.1 44.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|304314698|ref|YP_003849845.1| - 3e-41 141.5 39.4 3.9e-41 141.1 39.4 1.1 1 0 0 1 1 1 1 Amino acid permease TPR_8 PF13181.6 gi|304314699|ref|YP_003849846.1| - 8.8e-23 78.6 0.1 0.00015 21.7 0.1 6.0 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|304314699|ref|YP_003849846.1| - 1.8e-22 78.2 1.6 3.5e-06 26.6 0.0 6.0 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|304314699|ref|YP_003849846.1| - 3.7e-20 70.4 6.8 7e-05 22.6 0.1 5.7 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|304314699|ref|YP_003849846.1| - 1.1e-19 69.3 0.0 0.0039 17.5 0.0 5.7 5 1 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|304314699|ref|YP_003849846.1| - 2.1e-18 66.7 1.6 0.00012 22.7 0.1 5.0 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|304314699|ref|YP_003849846.1| - 1.1e-16 61.1 0.0 5e-07 30.1 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|304314699|ref|YP_003849846.1| - 3.1e-16 58.8 0.1 0.0034 17.0 0.0 5.3 2 2 3 5 5 5 4 TPR repeat TPR_14 PF13428.6 gi|304314699|ref|YP_003849846.1| - 1.7e-15 56.4 4.8 0.076 13.9 0.0 5.7 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|304314699|ref|YP_003849846.1| - 4.6e-15 55.5 1.9 8e-06 25.9 0.0 3.5 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|304314699|ref|YP_003849846.1| - 5.7e-15 55.4 2.0 1.3e-06 28.5 0.0 4.2 3 2 1 4 4 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|304314699|ref|YP_003849846.1| - 4.4e-08 33.2 0.0 0.0018 18.4 0.0 2.8 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|304314699|ref|YP_003849846.1| - 1.7e-07 31.4 0.0 1.1 10.1 0.0 5.5 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|304314699|ref|YP_003849846.1| - 4.5e-06 26.3 0.5 1.8 8.8 0.0 4.8 4 1 0 4 4 4 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|304314699|ref|YP_003849846.1| - 4.1e-05 23.3 3.9 4.7 7.2 0.0 4.6 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|304314699|ref|YP_003849846.1| - 5.8e-05 22.4 0.0 0.00019 20.8 0.0 2.0 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|304314699|ref|YP_003849846.1| - 0.00039 20.7 0.0 0.3 11.4 0.0 3.2 1 1 2 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|304314699|ref|YP_003849846.1| - 0.0031 16.5 0.0 1.4 7.7 0.0 2.5 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 ChAPs PF09295.10 gi|304314699|ref|YP_003849846.1| - 0.0041 16.2 0.0 0.029 13.4 0.0 2.0 1 1 1 2 2 2 1 ChAPs (Chs5p-Arf1p-binding proteins) BTAD PF03704.17 gi|304314699|ref|YP_003849846.1| - 0.0064 16.9 0.7 3.3 8.1 0.1 2.8 2 1 1 3 3 3 1 Bacterial transcriptional activator domain PPR PF01535.20 gi|304314699|ref|YP_003849846.1| - 0.076 13.3 0.1 0.94 9.9 0.0 2.7 3 0 0 3 3 2 0 PPR repeat DUF5113 PF17140.4 gi|304314699|ref|YP_003849846.1| - 0.078 12.8 0.0 0.38 10.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5113) FAT PF02259.23 gi|304314699|ref|YP_003849846.1| - 0.078 12.2 0.3 4.3 6.4 0.3 2.2 1 1 0 1 1 1 0 FAT domain Fis1_TPR_C PF14853.6 gi|304314699|ref|YP_003849846.1| - 0.088 12.9 3.4 13 6.0 0.1 3.4 3 1 1 4 4 3 0 Fis1 C-terminal tetratricopeptide repeat NRDE-2 PF08424.10 gi|304314699|ref|YP_003849846.1| - 0.091 11.9 0.1 0.12 11.4 0.1 1.2 1 0 0 1 1 1 0 NRDE-2, necessary for RNA interference MIT PF04212.18 gi|304314699|ref|YP_003849846.1| - 0.13 12.3 0.2 34 4.6 0.2 2.8 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain Alkyl_sulf_dimr PF14863.6 gi|304314699|ref|YP_003849846.1| - 0.14 12.6 0.0 33 4.9 0.0 2.9 3 0 0 3 3 3 0 Alkyl sulfatase dimerisation Response_reg PF00072.24 gi|304314700|ref|YP_003849847.1| - 3.5e-49 165.7 0.3 2.5e-25 88.8 0.1 2.5 2 0 0 2 2 2 2 Response regulator receiver domain Glyco_tranf_2_3 PF13641.6 gi|304314700|ref|YP_003849847.1| - 2.4e-43 148.7 0.1 5.2e-43 147.6 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|304314700|ref|YP_003849847.1| - 3.5e-31 108.7 4.5 3.5e-31 108.7 4.5 2.6 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|304314700|ref|YP_003849847.1| - 1.9e-30 105.9 0.2 3.7e-30 105.0 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|304314700|ref|YP_003849847.1| - 3.6e-16 59.1 0.0 7.9e-16 58.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|304314700|ref|YP_003849847.1| - 1.2e-08 34.8 0.0 2e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|304314700|ref|YP_003849847.1| - 4.2e-06 27.2 0.0 1e-05 25.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 B12-binding PF02310.19 gi|304314700|ref|YP_003849847.1| - 0.00056 19.9 0.1 2.4 8.2 0.0 3.4 3 0 0 3 3 3 2 B12 binding domain LytR_C PF13399.6 gi|304314700|ref|YP_003849847.1| - 0.015 16.2 0.0 2 9.4 0.0 2.6 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator GFRP PF06399.13 gi|304314700|ref|YP_003849847.1| - 0.038 13.9 0.0 9.6 6.2 0.0 2.7 2 0 0 2 2 2 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) B9-C2 PF07162.11 gi|304314700|ref|YP_003849847.1| - 0.046 13.9 0.0 1.5 9.0 0.0 2.2 2 0 0 2 2 2 0 Ciliary basal body-associated, B9 protein 3HCDH_RFF PF18321.1 gi|304314700|ref|YP_003849847.1| - 0.07 13.6 0.3 15 6.1 0.1 2.9 2 1 1 3 3 3 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DUF2207 PF09972.9 gi|304314700|ref|YP_003849847.1| - 0.52 9.0 3.5 8.5 5.0 2.1 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Chitin_synth_2 PF03142.15 gi|304314700|ref|YP_003849847.1| - 0.75 8.3 7.5 2 6.9 0.0 3.0 3 1 1 4 4 4 0 Chitin synthase HHH_8 PF14716.6 gi|304314701|ref|YP_003849848.1| - 1.2e-21 76.8 6.2 1.8e-20 73.0 0.4 4.1 3 1 1 4 4 4 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.6 gi|304314701|ref|YP_003849848.1| - 1.8e-19 69.6 0.1 4.4e-19 68.4 0.1 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_5 PF14520.6 gi|304314701|ref|YP_003849848.1| - 3.1e-13 50.1 3.0 4.6e-10 40.0 0.1 3.0 3 0 0 3 3 3 2 Helix-hairpin-helix domain PHP PF02811.19 gi|304314701|ref|YP_003849848.1| - 1.9e-08 34.8 0.1 8.1e-08 32.7 0.1 1.9 1 1 0 1 1 1 1 PHP domain DNA_pol_B_palm PF14792.6 gi|304314701|ref|YP_003849848.1| - 2.1e-07 31.1 0.0 4.5e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.23 gi|304314701|ref|YP_003849848.1| - 6.5e-06 25.7 2.8 0.00057 19.6 0.0 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|304314701|ref|YP_003849848.1| - 3.3e-05 23.6 0.0 0.00011 21.9 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda NTP_transf_2 PF01909.23 gi|304314701|ref|YP_003849848.1| - 0.00029 21.1 0.7 0.0018 18.5 0.2 2.3 2 0 0 2 2 2 1 Nucleotidyltransferase domain Cdd1 PF11731.8 gi|304314701|ref|YP_003849848.1| - 0.0073 16.5 0.1 2.4 8.5 0.0 2.6 1 1 1 2 2 2 1 Pathogenicity locus HHH_2 PF12826.7 gi|304314701|ref|YP_003849848.1| - 0.014 15.5 0.3 11 6.3 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif HRDC PF00570.23 gi|304314701|ref|YP_003849848.1| - 0.096 12.7 0.5 1.2 9.2 0.0 3.2 5 0 0 5 5 5 0 HRDC domain HHH_3 PF12836.7 gi|304314701|ref|YP_003849848.1| - 0.26 11.5 1.0 39 4.6 0.0 3.1 3 1 0 3 3 3 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|304314701|ref|YP_003849848.1| - 0.34 11.3 1.4 80 3.9 0.0 4.1 4 0 0 4 4 4 0 IMS family HHH motif PcrB PF01884.17 gi|304314702|ref|YP_003849849.1| - 4.9e-90 300.9 0.0 5.5e-90 300.8 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|304314702|ref|YP_003849849.1| - 7.2e-05 22.4 0.1 0.00015 21.4 0.0 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|304314702|ref|YP_003849849.1| - 0.0015 17.8 0.5 0.0026 17.0 0.5 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|304314702|ref|YP_003849849.1| - 0.0079 15.5 0.0 0.43 9.9 0.0 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase Trp_syntA PF00290.20 gi|304314702|ref|YP_003849849.1| - 0.0079 15.1 1.1 0.027 13.3 0.4 1.9 2 0 0 2 2 2 1 Tryptophan synthase alpha chain B12-binding PF02310.19 gi|304314702|ref|YP_003849849.1| - 0.013 15.6 0.1 1 9.4 0.1 2.2 2 0 0 2 2 2 0 B12 binding domain FMN_dh PF01070.18 gi|304314702|ref|YP_003849849.1| - 0.048 12.7 0.2 0.048 12.7 0.2 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|304314702|ref|YP_003849849.1| - 0.053 12.5 0.6 0.091 11.7 0.2 1.6 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 gi|304314702|ref|YP_003849849.1| - 0.11 11.8 1.0 0.9 8.8 0.3 2.2 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG zinc_ribbon_2 PF13240.6 gi|304314703|ref|YP_003849850.1| - 3.8e-05 23.2 5.0 5.3e-05 22.8 5.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L40e PF01020.17 gi|304314703|ref|YP_003849850.1| - 6.4e-05 22.8 4.5 7e-05 22.6 4.5 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.7 gi|304314703|ref|YP_003849850.1| - 0.00017 21.5 0.9 0.00018 21.5 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|304314703|ref|YP_003849850.1| - 0.0045 16.4 3.5 0.0063 15.9 3.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|304314703|ref|YP_003849850.1| - 0.009 15.3 3.2 0.013 14.9 3.2 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DHHC PF01529.20 gi|304314703|ref|YP_003849850.1| - 0.029 14.5 1.2 0.03 14.4 1.2 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF326 PF03860.16 gi|304314703|ref|YP_003849850.1| - 3.7 7.7 8.2 3.9 7.6 0.9 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) Ribo_biogen_C PF04034.13 gi|304314704|ref|YP_003849851.1| - 1.4e-49 167.0 0.0 1.7e-49 166.8 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|304314704|ref|YP_003849851.1| - 2e-06 27.5 0.3 3.2e-06 26.8 0.3 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_lid_2 PF17863.1 gi|304314705|ref|YP_003849852.1| - 1.2e-16 60.3 2.5 1.2e-16 60.3 2.5 2.2 2 0 0 2 2 2 1 AAA lid domain VWA PF00092.28 gi|304314705|ref|YP_003849852.1| - 6.5e-16 59.1 0.0 1.3e-15 58.0 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|304314705|ref|YP_003849852.1| - 6.1e-12 45.4 0.2 2.6e-06 27.0 0.0 2.4 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA_2 PF13519.6 gi|304314705|ref|YP_003849852.1| - 6.5e-12 46.0 0.0 2e-11 44.5 0.0 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|304314705|ref|YP_003849852.1| - 6.3e-09 36.0 0.1 0.00041 20.4 0.0 2.8 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) VWA_3 PF13768.6 gi|304314705|ref|YP_003849852.1| - 2.8e-07 30.6 0.0 5.6e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|304314705|ref|YP_003849852.1| - 6e-06 25.8 0.2 6e-06 25.8 0.2 1.8 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein MCM PF00493.23 gi|304314705|ref|YP_003849852.1| - 0.00024 20.3 0.1 0.013 14.6 0.0 2.6 2 1 0 2 2 2 1 MCM P-loop domain AAA PF00004.29 gi|304314705|ref|YP_003849852.1| - 0.00027 21.4 0.4 0.0069 16.8 0.0 3.2 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|304314705|ref|YP_003849852.1| - 0.00094 19.6 0.5 0.0068 16.8 0.2 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_3 PF07726.11 gi|304314705|ref|YP_003849852.1| - 0.003 17.4 0.1 0.73 9.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|304314705|ref|YP_003849852.1| - 0.0041 16.8 0.0 2.7 7.6 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 gi|304314705|ref|YP_003849852.1| - 0.0081 16.4 0.1 0.05 13.9 0.1 2.3 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|304314705|ref|YP_003849852.1| - 0.016 15.3 0.0 0.041 13.9 0.0 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain vWA-TerF-like PF10138.9 gi|304314705|ref|YP_003849852.1| - 0.036 14.2 0.0 0.062 13.4 0.0 1.4 1 0 0 1 1 1 0 vWA found in TerF C terminus AAA_30 PF13604.6 gi|304314705|ref|YP_003849852.1| - 0.036 13.8 0.7 0.43 10.3 0.7 2.5 1 1 0 1 1 1 0 AAA domain MCM_lid PF17855.1 gi|304314705|ref|YP_003849852.1| - 0.043 14.2 0.8 0.15 12.5 0.2 2.2 2 0 0 2 2 2 0 MCM AAA-lid domain AAA_29 PF13555.6 gi|304314705|ref|YP_003849852.1| - 0.047 13.4 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|304314705|ref|YP_003849852.1| - 0.085 13.4 0.0 0.63 10.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF2849 PF11011.8 gi|304314705|ref|YP_003849852.1| - 0.1 13.3 0.5 0.45 11.2 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2849) NACHT PF05729.12 gi|304314705|ref|YP_003849852.1| - 0.15 12.0 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|304314705|ref|YP_003849852.1| - 0.21 11.6 0.0 0.38 10.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE HypA PF01155.19 gi|304314706|ref|YP_003849853.1| - 0.00018 21.5 2.4 0.00019 21.4 2.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|304314706|ref|YP_003849853.1| - 0.0044 17.1 3.7 0.0091 16.1 3.5 1.6 1 1 0 1 1 1 1 Zinc ribbon domain DUF35_N PF12172.8 gi|304314706|ref|YP_003849853.1| - 0.029 14.3 3.2 0.2 11.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_9 PF14369.6 gi|304314706|ref|YP_003849853.1| - 0.039 14.2 3.1 1.6 9.1 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon Zn_Tnp_IS1 PF03811.13 gi|304314706|ref|YP_003849853.1| - 0.047 13.4 1.2 0.047 13.4 1.2 2.0 2 0 0 2 2 2 0 InsA N-terminal domain TFIIS_C PF01096.18 gi|304314706|ref|YP_003849853.1| - 0.091 12.6 8.4 0.32 10.9 1.6 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF116 PF01976.17 gi|304314708|ref|YP_003849855.1| - 9e-46 155.2 0.2 1.1e-45 154.9 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 TatD_DNase PF01026.21 gi|304314709|ref|YP_003849856.1| - 4.6e-24 85.2 0.0 1.1e-23 83.9 0.0 1.5 1 1 0 1 1 1 1 TatD related DNase VIT1 PF01988.19 gi|304314710|ref|YP_003849857.1| - 3.1e-17 63.2 16.8 1.5e-13 51.2 1.2 2.1 1 1 1 2 2 2 2 VIT family DUF1361 PF07099.11 gi|304314710|ref|YP_003849857.1| - 0.017 15.1 2.5 0.027 14.4 1.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1361) DUF4231 PF14015.6 gi|304314710|ref|YP_003849857.1| - 0.95 10.0 3.2 4.6 7.8 0.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) DUF2427 PF10348.9 gi|304314710|ref|YP_003849857.1| - 0.95 9.3 4.2 0.28 11.0 0.8 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF2427) DUF3040 PF11239.8 gi|304314710|ref|YP_003849857.1| - 2.7 8.3 20.3 21 5.4 10.4 3.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) HMG-CoA_red PF00368.18 gi|304314711|ref|YP_003849858.1| - 3.3e-134 447.5 1.2 3.7e-134 447.4 1.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CoA_binding PF02629.19 gi|304314712|ref|YP_003849859.1| - 3.8e-27 94.8 0.0 1e-26 93.5 0.0 1.7 1 0 0 1 1 1 1 CoA binding domain Ligase_CoA PF00549.19 gi|304314712|ref|YP_003849859.1| - 3.6e-19 69.1 0.2 5.4e-19 68.5 0.2 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|304314712|ref|YP_003849859.1| - 5.2e-12 45.7 0.1 8.9e-12 45.0 0.1 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|304314712|ref|YP_003849859.1| - 0.0044 17.5 0.0 0.015 15.8 0.0 1.9 3 0 0 3 3 3 1 CoA binding domain DHquinase_I PF01487.15 gi|304314714|ref|YP_003849861.1| - 1e-52 179.7 0.2 1.2e-52 179.5 0.2 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Peptidase_S24 PF00717.23 gi|304314715|ref|YP_003849862.1| - 3.8e-15 55.6 1.1 7.3e-15 54.7 0.5 1.8 2 0 0 2 2 2 1 Peptidase S24-like DUF4330 PF14221.6 gi|304314715|ref|YP_003849862.1| - 0.0048 17.1 2.0 0.008 16.4 1.9 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4330) Peptidase_M48 PF01435.18 gi|304314716|ref|YP_003849863.1| - 1.7e-47 161.7 0.0 2.3e-47 161.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 EF-hand_5 PF13202.6 gi|304314716|ref|YP_003849863.1| - 7.9e-06 25.1 1.5 1.9e-05 23.9 0.1 2.3 2 0 0 2 2 2 1 EF hand Peptidase_M56 PF05569.11 gi|304314716|ref|YP_003849863.1| - 2.2e-05 23.8 0.0 3.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 HTH_IclR PF09339.10 gi|304314716|ref|YP_003849863.1| - 0.047 13.5 0.1 10 6.0 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain EF-hand_6 PF13405.6 gi|304314716|ref|YP_003849863.1| - 0.061 13.3 0.0 1.7 8.8 0.0 2.6 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.32 gi|304314716|ref|YP_003849863.1| - 0.083 12.5 0.0 0.68 9.6 0.0 2.3 2 0 0 2 2 2 0 EF hand Big_5 PF13205.6 gi|304314717|ref|YP_003849864.1| - 1.2e-09 38.8 0.1 1.9e-08 34.9 0.0 2.5 3 0 0 3 3 3 1 Bacterial Ig-like domain PEP-utilizers PF00391.23 gi|304314718|ref|YP_003849865.1| - 0.023 14.4 0.7 0.083 12.6 0.4 2.1 1 1 1 2 2 2 0 PEP-utilising enzyme, mobile domain GHMP_kinases_N PF00288.26 gi|304314719|ref|YP_003849866.1| - 3.1e-06 27.3 1.3 6.7e-06 26.2 1.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|304314719|ref|YP_003849866.1| - 0.00073 19.9 0.0 0.0018 18.6 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Methyltransf_24 PF13578.6 gi|304314720|ref|YP_003849867.1| - 3.9e-08 34.3 0.0 5.5e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|304314720|ref|YP_003849867.1| - 2.7e-07 29.9 0.0 3.7e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_25 PF13649.6 gi|304314720|ref|YP_003849867.1| - 6.5e-07 30.0 0.0 9.9e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|304314720|ref|YP_003849867.1| - 1.1e-06 28.9 0.0 1.4e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase CmcI PF04989.12 gi|304314720|ref|YP_003849867.1| - 6.8e-06 25.9 0.0 7.9e-06 25.7 0.0 1.0 1 0 0 1 1 1 1 Cephalosporin hydroxylase Methyltransf_31 PF13847.6 gi|304314720|ref|YP_003849867.1| - 1.2e-05 25.2 0.0 1.4e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|304314720|ref|YP_003849867.1| - 0.00042 20.9 0.0 0.00086 19.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|304314720|ref|YP_003849867.1| - 0.00094 19.0 0.1 0.002 17.9 0.1 1.5 1 1 1 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_19 PF04672.12 gi|304314720|ref|YP_003849867.1| - 0.0042 16.6 0.0 0.0058 16.2 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl methyltransferase Methyltransf_12 PF08242.12 gi|304314720|ref|YP_003849867.1| - 0.0051 17.5 0.0 0.0092 16.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TrkA_N PF02254.18 gi|304314720|ref|YP_003849867.1| - 0.0061 16.8 0.0 0.0086 16.3 0.0 1.2 1 0 0 1 1 1 1 TrkA-N domain RrnaAD PF00398.20 gi|304314720|ref|YP_003849867.1| - 0.028 13.5 0.0 0.035 13.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|304314720|ref|YP_003849867.1| - 0.06 13.2 0.0 0.072 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|304314720|ref|YP_003849867.1| - 0.062 12.8 0.0 0.099 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Met_10 PF02475.16 gi|304314720|ref|YP_003849867.1| - 0.086 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein 3Beta_HSD PF01073.19 gi|304314720|ref|YP_003849867.1| - 0.16 10.9 0.0 0.22 10.5 0.0 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 gi|304314720|ref|YP_003849867.1| - 0.22 10.9 0.0 0.3 10.5 0.0 1.1 1 0 0 1 1 1 0 short chain dehydrogenase DeoC PF01791.9 gi|304314721|ref|YP_003849868.1| - 2.8e-69 233.3 0.0 3.2e-69 233.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PucR PF07905.11 gi|304314721|ref|YP_003849868.1| - 0.005 17.1 0.0 0.88 9.9 0.0 2.7 2 0 0 2 2 2 1 Purine catabolism regulatory protein-like family PEP_mutase PF13714.6 gi|304314721|ref|YP_003849868.1| - 0.013 14.9 0.2 2.5 7.5 0.0 2.8 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase OMPdecase PF00215.24 gi|304314721|ref|YP_003849868.1| - 0.027 14.1 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Dus PF01207.17 gi|304314721|ref|YP_003849868.1| - 0.039 13.0 0.0 1.4 7.9 0.0 2.6 2 2 0 2 2 2 0 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|304314721|ref|YP_003849868.1| - 0.18 11.1 1.2 0.92 8.8 0.3 2.1 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DHQS PF01959.16 gi|304314722|ref|YP_003849869.1| - 2.4e-150 500.3 1.6 2.7e-150 500.2 1.6 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II Hint PF01079.20 gi|304314722|ref|YP_003849869.1| - 0.0016 18.0 0.0 0.033 13.7 0.0 2.3 2 0 0 2 2 2 1 Hint module TOBE_2 PF08402.10 gi|304314722|ref|YP_003849869.1| - 0.066 13.4 0.5 22 5.3 0.0 3.3 3 0 0 3 3 3 0 TOBE domain DUF1953 PF09196.10 gi|304314722|ref|YP_003849869.1| - 0.086 12.7 0.3 1.8 8.4 0.2 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1953) Hpr_kinase_C PF07475.12 gi|304314723|ref|YP_003849870.1| - 5.2e-06 26.1 0.0 0.00026 20.6 0.0 2.3 1 1 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_25 PF13481.6 gi|304314723|ref|YP_003849870.1| - 0.00018 21.2 0.0 0.00035 20.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|304314723|ref|YP_003849870.1| - 0.0038 17.4 0.0 0.0066 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|304314723|ref|YP_003849870.1| - 0.014 15.8 0.0 0.026 14.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|304314723|ref|YP_003849870.1| - 0.016 15.3 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|304314723|ref|YP_003849870.1| - 0.029 14.6 0.0 0.063 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain PEPCK_ATP PF01293.20 gi|304314723|ref|YP_003849870.1| - 0.037 12.7 0.0 0.045 12.4 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase IstB_IS21 PF01695.17 gi|304314723|ref|YP_003849870.1| - 0.047 13.4 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|304314723|ref|YP_003849870.1| - 0.051 13.3 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|304314723|ref|YP_003849870.1| - 0.054 14.1 0.0 0.12 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|304314723|ref|YP_003849870.1| - 0.054 13.9 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|304314723|ref|YP_003849870.1| - 0.066 13.5 0.1 0.15 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|304314723|ref|YP_003849870.1| - 0.069 13.6 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|304314723|ref|YP_003849870.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|304314723|ref|YP_003849870.1| - 0.12 12.2 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|304314723|ref|YP_003849870.1| - 0.12 12.8 0.0 0.26 11.8 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Gam PF06064.11 gi|304314723|ref|YP_003849870.1| - 0.17 12.2 0.1 2.1 8.7 0.0 2.4 2 0 0 2 2 2 0 Host-nuclease inhibitor protein Gam LigT_PEase PF02834.16 gi|304314724|ref|YP_003849871.1| - 2.2e-32 111.1 0.0 3.7e-15 55.9 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|304314724|ref|YP_003849871.1| - 4.7e-17 62.3 0.0 5.5e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|304314724|ref|YP_003849871.1| - 9.4e-05 22.4 0.0 0.00036 20.5 0.0 1.8 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain tRNA_NucTransf2 PF09249.11 gi|304314725|ref|YP_003849872.1| - 7.1e-43 145.5 0.0 1.2e-42 144.7 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|304314725|ref|YP_003849872.1| - 4.7e-18 65.3 0.0 1.3e-17 63.9 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|304314725|ref|YP_003849872.1| - 0.05 13.8 0.0 0.13 12.4 0.0 1.6 1 1 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DNA_primase_S PF01896.19 gi|304314726|ref|YP_003849873.1| - 2.8e-16 60.1 0.1 6.9e-16 58.8 0.1 1.7 1 1 0 1 1 1 1 DNA primase small subunit DNA_primase_lrg PF04104.14 gi|304314727|ref|YP_003849874.1| - 1e-22 80.8 0.0 2.6e-22 79.5 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit tRNA-synt_1g PF09334.11 gi|304314728|ref|YP_003849875.1| - 4.5e-169 562.3 0.0 5.6e-169 562.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|304314728|ref|YP_003849875.1| - 3.5e-24 84.7 0.1 7.8e-24 83.6 0.1 1.6 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|304314728|ref|YP_003849875.1| - 6.2e-19 67.7 0.2 4.5e-07 28.5 0.1 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|304314728|ref|YP_003849875.1| - 4.3e-11 42.7 0.0 8.7e-06 25.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|304314728|ref|YP_003849875.1| - 2.3e-05 24.4 0.0 4.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA Zn-ribbon_8 PF09723.10 gi|304314728|ref|YP_003849875.1| - 0.00051 20.1 9.8 0.0053 16.9 1.9 2.8 2 0 0 2 2 2 2 Zinc ribbon domain tRNA-synt_1f PF01921.18 gi|304314728|ref|YP_003849875.1| - 0.00056 18.9 0.0 0.0045 16.0 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) zinc-ribbons_6 PF07191.12 gi|304314728|ref|YP_003849875.1| - 0.018 15.0 4.6 0.037 14.0 4.6 1.5 1 0 0 1 1 1 0 zinc-ribbons DALR_1 PF05746.15 gi|304314728|ref|YP_003849875.1| - 0.021 15.0 0.0 0.046 13.9 0.0 1.5 1 0 0 1 1 1 0 DALR anticodon binding domain EHD_N PF16880.5 gi|304314728|ref|YP_003849875.1| - 0.038 13.9 0.0 0.11 12.5 0.0 1.8 1 0 0 1 1 1 0 N-terminal EH-domain containing protein DZR PF12773.7 gi|304314728|ref|YP_003849875.1| - 0.049 13.7 7.8 0.35 10.9 5.1 2.2 1 1 1 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|304314728|ref|YP_003849875.1| - 0.071 13.1 4.7 2 8.5 0.3 2.5 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PolC_DP2 PF03833.13 gi|304314728|ref|YP_003849875.1| - 0.17 9.7 0.1 0.25 9.2 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF1272 PF06906.11 gi|304314728|ref|YP_003849875.1| - 2.8 8.1 7.9 1.8 8.7 1.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zinc_ribbon_9 PF14369.6 gi|304314728|ref|YP_003849875.1| - 4.9 7.5 9.9 0.72 10.2 1.2 2.7 2 0 0 2 2 2 0 zinc-ribbon zf-C3HC4_3 PF13920.6 gi|304314728|ref|YP_003849875.1| - 5 7.1 6.8 1.2e+02 2.7 6.8 2.4 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF530 PF04409.12 gi|304314729|ref|YP_003849876.1| - 1.3e-216 720.1 0.1 1.4e-216 719.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF530) HTH_7 PF02796.15 gi|304314730|ref|YP_003849877.1| - 1.8e-12 47.1 4.6 7.7e-06 25.9 0.8 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|304314730|ref|YP_003849877.1| - 5e-10 38.9 0.1 2.7e-05 23.8 0.0 2.7 3 0 0 3 3 3 2 Homeodomain-like domain HTH_32 PF13565.6 gi|304314730|ref|YP_003849877.1| - 9.4e-07 29.4 2.3 0.008 16.8 0.1 2.6 2 1 1 3 3 3 2 Homeodomain-like domain HTH_24 PF13412.6 gi|304314730|ref|YP_003849877.1| - 4.8e-06 26.0 1.4 0.71 9.5 0.0 4.6 4 1 1 5 5 5 2 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|304314730|ref|YP_003849877.1| - 0.00015 21.6 0.7 0.2 11.6 0.0 3.2 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|304314730|ref|YP_003849877.1| - 0.0002 21.3 0.1 7 6.8 0.0 3.3 3 0 0 3 3 3 1 Winged helix-turn helix HTH_28 PF13518.6 gi|304314730|ref|YP_003849877.1| - 0.00026 21.1 0.1 0.011 15.9 0.0 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|304314730|ref|YP_003849877.1| - 0.00059 19.5 0.0 0.84 9.4 0.0 2.8 3 0 0 3 3 3 2 Sigma-70, region 4 GerE PF00196.19 gi|304314730|ref|YP_003849877.1| - 0.0008 18.9 0.0 0.47 10.0 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family DUF1699 PF08004.11 gi|304314730|ref|YP_003849877.1| - 0.004 16.8 0.2 0.041 13.6 0.1 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF1699) HTH_38 PF13936.6 gi|304314730|ref|YP_003849877.1| - 0.0055 16.4 0.1 3.2 7.6 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_11 PF08279.12 gi|304314730|ref|YP_003849877.1| - 0.0089 16.0 0.3 5.4 7.0 0.0 2.9 3 0 0 3 3 3 1 HTH domain HTH_17 PF12728.7 gi|304314730|ref|YP_003849877.1| - 0.0096 16.1 2.8 6.2 7.1 0.1 3.9 3 2 1 4 4 4 1 Helix-turn-helix domain DUF3071 PF11268.8 gi|304314730|ref|YP_003849877.1| - 0.016 15.3 0.2 1.8 8.6 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3071) HTH_20 PF12840.7 gi|304314730|ref|YP_003849877.1| - 0.018 15.1 0.0 4.2 7.5 0.0 3.0 3 1 0 3 3 3 0 Helix-turn-helix domain MerR_1 PF13411.6 gi|304314730|ref|YP_003849877.1| - 0.029 14.4 3.3 0.081 13.0 0.1 2.8 3 0 0 3 3 3 0 MerR HTH family regulatory protein Trp_repressor PF01371.19 gi|304314730|ref|YP_003849877.1| - 0.054 13.6 0.1 3.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Trp repressor protein HTH_40 PF14493.6 gi|304314730|ref|YP_003849877.1| - 0.11 12.9 0.0 7.8 7.0 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain Glycos_transf_4 PF00953.21 gi|304314731|ref|YP_003849878.1| - 4.4e-28 98.3 20.5 4.4e-28 98.3 20.5 2.6 2 1 0 2 2 2 1 Glycosyl transferase family 4 DUF3278 PF11683.8 gi|304314731|ref|YP_003849878.1| - 0.3 11.2 0.1 0.3 11.2 0.1 2.8 3 2 1 4 4 4 0 Protein of unknown function (DUF3278) TPR_12 PF13424.6 gi|304314732|ref|YP_003849879.1| - 2.2e-18 66.3 4.5 3.7e-10 39.9 0.3 3.3 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|304314732|ref|YP_003849879.1| - 1.3e-11 43.7 2.8 0.056 13.6 0.0 4.9 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|304314732|ref|YP_003849879.1| - 4.4e-08 33.3 1.8 0.13 13.2 0.3 4.7 4 1 1 5 5 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|304314732|ref|YP_003849879.1| - 4.8e-08 32.5 1.5 0.069 13.0 0.0 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|304314732|ref|YP_003849879.1| - 7.6e-08 32.0 9.1 0.06 13.6 0.0 4.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|304314732|ref|YP_003849879.1| - 1.8e-07 30.7 7.2 0.0031 17.4 0.2 4.1 6 0 0 6 6 4 2 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|304314732|ref|YP_003849879.1| - 3.6e-07 30.1 2.9 0.17 12.0 0.1 4.2 2 2 1 4 4 4 3 Anaphase-promoting complex subunit 5 TPR_10 PF13374.6 gi|304314732|ref|YP_003849879.1| - 3.4e-05 23.6 1.6 0.58 10.1 0.1 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|304314732|ref|YP_003849879.1| - 5.3e-05 22.7 0.0 0.013 14.9 0.0 2.6 1 1 2 3 3 3 1 MalT-like TPR region TPR_21 PF09976.9 gi|304314732|ref|YP_003849879.1| - 0.00044 20.0 3.4 0.0025 17.5 0.4 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat-like domain ANAPC3 PF12895.7 gi|304314732|ref|YP_003849879.1| - 0.00058 20.0 0.9 0.1 12.9 0.1 2.8 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 RPN7 PF10602.9 gi|304314732|ref|YP_003849879.1| - 0.0025 17.5 5.2 0.66 9.7 0.5 3.4 2 1 1 3 3 3 3 26S proteasome subunit RPN7 TPR_6 PF13174.6 gi|304314732|ref|YP_003849879.1| - 0.0061 17.1 7.3 1.8 9.4 0.1 5.1 5 0 0 5 5 4 1 Tetratricopeptide repeat Laminin_II PF06009.12 gi|304314732|ref|YP_003849879.1| - 0.0065 16.5 1.2 0.019 15.0 1.2 1.8 1 0 0 1 1 1 1 Laminin Domain II TPR_19 PF14559.6 gi|304314732|ref|YP_003849879.1| - 0.032 14.7 6.8 0.5 10.9 0.2 3.7 4 1 0 4 4 3 0 Tetratricopeptide repeat DUF2600 PF10776.9 gi|304314732|ref|YP_003849879.1| - 0.039 12.8 0.8 0.29 10.0 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2600) PPR PF01535.20 gi|304314732|ref|YP_003849879.1| - 0.066 13.5 3.1 34 5.0 0.0 4.5 4 0 0 4 4 4 0 PPR repeat TPR_16 PF13432.6 gi|304314732|ref|YP_003849879.1| - 0.084 13.5 3.4 5.1 7.8 0.4 3.7 2 2 0 2 2 2 0 Tetratricopeptide repeat TPR_20 PF14561.6 gi|304314732|ref|YP_003849879.1| - 0.12 12.8 2.5 6.9 7.1 0.1 3.2 2 1 1 3 3 3 0 Tetratricopeptide repeat EcoEI_R_C PF08463.10 gi|304314732|ref|YP_003849879.1| - 0.32 11.1 7.1 0.44 10.7 0.6 2.7 2 1 0 2 2 2 0 EcoEI R protein C-terminal TTRAP PF14203.6 gi|304314732|ref|YP_003849879.1| - 0.55 10.3 9.4 7.5 6.6 0.1 4.6 5 1 0 5 5 5 0 Putative tranposon-transfer assisting protein DUF2225 PF09986.9 gi|304314732|ref|YP_003849879.1| - 1.4 8.6 6.3 5 6.8 0.7 2.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) ATPase PF06745.13 gi|304314733|ref|YP_003849880.1| - 3.6e-18 65.7 0.0 5.1e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|304314733|ref|YP_003849880.1| - 0.0027 17.3 0.0 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|304314733|ref|YP_003849880.1| - 0.004 16.5 0.0 0.0061 15.9 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|304314733|ref|YP_003849880.1| - 0.0069 16.1 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|304314733|ref|YP_003849880.1| - 0.073 13.5 0.0 0.1 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|304314733|ref|YP_003849880.1| - 0.074 13.0 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea CobU PF02283.16 gi|304314733|ref|YP_003849880.1| - 0.074 12.6 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_14 PF13173.6 gi|304314733|ref|YP_003849880.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain RecA PF00154.21 gi|304314733|ref|YP_003849880.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_22 PF13401.6 gi|304314733|ref|YP_003849880.1| - 0.15 12.3 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|304314733|ref|YP_003849880.1| - 0.18 11.5 0.0 0.28 10.9 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein ATPase PF06745.13 gi|304314734|ref|YP_003849881.1| - 1.1e-32 113.3 0.0 1.4e-32 112.9 0.0 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|304314734|ref|YP_003849881.1| - 6.6e-06 25.8 0.0 1.7e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain MEDS PF14417.6 gi|304314734|ref|YP_003849881.1| - 5.9e-05 23.0 0.0 0.00024 21.0 0.0 2.0 1 1 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain RecA PF00154.21 gi|304314734|ref|YP_003849881.1| - 0.00031 20.3 0.1 0.0013 18.3 0.0 1.8 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|304314734|ref|YP_003849881.1| - 0.004 16.9 0.1 0.0061 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|304314734|ref|YP_003849881.1| - 0.02 14.7 0.0 0.053 13.3 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein Rad51 PF08423.11 gi|304314734|ref|YP_003849881.1| - 0.04 13.2 0.0 0.072 12.3 0.0 1.4 1 1 0 1 1 1 0 Rad51 ATPase PF06745.13 gi|304314735|ref|YP_003849882.1| - 3.5e-15 56.0 0.0 9.8e-14 51.3 0.0 2.2 1 1 1 2 2 2 1 KaiC Arf PF00025.21 gi|304314735|ref|YP_003849882.1| - 3.7e-11 42.8 0.0 6.2e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 ADP-ribosylation factor family Ras PF00071.22 gi|304314735|ref|YP_003849882.1| - 4.1e-09 36.2 0.0 6.1e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Ras family GTP_EFTU PF00009.27 gi|304314735|ref|YP_003849882.1| - 1.5e-07 31.2 0.0 4.5e-06 26.3 0.0 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Roc PF08477.13 gi|304314735|ref|YP_003849882.1| - 2.6e-07 30.9 0.0 3.9e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|304314735|ref|YP_003849882.1| - 7e-07 29.3 0.1 0.0019 18.1 0.0 2.4 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 gi|304314735|ref|YP_003849882.1| - 7.3e-07 29.3 0.0 1.6e-06 28.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 gi|304314735|ref|YP_003849882.1| - 4.8e-05 22.9 0.0 0.0001 21.8 0.0 1.5 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|304314735|ref|YP_003849882.1| - 0.0093 16.0 0.1 0.016 15.3 0.1 1.5 1 1 0 1 1 1 1 Dynamin family AAA_29 PF13555.6 gi|304314735|ref|YP_003849882.1| - 0.048 13.4 0.0 0.098 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|304314735|ref|YP_003849882.1| - 0.15 11.8 0.2 0.33 10.7 0.1 1.6 2 0 0 2 2 2 0 AAA domain Torsin PF06309.11 gi|304314735|ref|YP_003849882.1| - 0.16 12.1 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 Torsin Robl_LC7 PF03259.17 gi|304314736|ref|YP_003849883.1| - 1.2e-22 79.5 0.1 1.5e-22 79.2 0.1 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain Desmo_N PF06771.11 gi|304314736|ref|YP_003849883.1| - 0.17 12.2 0.0 0.24 11.8 0.0 1.2 1 0 0 1 1 1 0 Viral Desmoplakin N-terminus Class_IIIsignal PF04021.12 gi|304314737|ref|YP_003849884.1| - 0.15 12.1 1.9 0.24 11.4 1.9 1.3 1 0 0 1 1 1 0 Class III signal peptide MCR_C PF04609.12 gi|304314739|ref|YP_003849886.1| - 5.8e-08 32.2 0.0 8.3e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C L27 PF02828.16 gi|304314739|ref|YP_003849886.1| - 0.046 13.5 0.0 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 L27 domain DUF4242 PF14026.6 gi|304314739|ref|YP_003849886.1| - 0.18 12.0 0.0 0.31 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4242) DUF131 PF01998.17 gi|304314741|ref|YP_003849888.1| - 1.9e-20 72.2 4.3 1.9e-20 72.2 4.3 2.0 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF4405 PF14358.6 gi|304314741|ref|YP_003849888.1| - 0.12 13.0 4.0 0.48 11.0 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) DUF2905 PF11146.8 gi|304314741|ref|YP_003849888.1| - 0.15 12.3 5.7 0.17 12.1 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2905) DUF973 PF06157.11 gi|304314741|ref|YP_003849888.1| - 0.21 10.6 8.4 0.33 10.0 8.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF3792 PF12670.7 gi|304314741|ref|YP_003849888.1| - 0.21 11.7 9.4 1.3 9.2 9.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3792) DUF5362 PF17319.2 gi|304314741|ref|YP_003849888.1| - 1.6 8.6 9.7 86 3.1 9.7 2.1 1 1 0 1 1 1 0 Family of unknown function (DUF5362) DUF2207 PF09972.9 gi|304314741|ref|YP_003849888.1| - 1.9 7.1 4.3 2.2 6.9 4.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Pox_A14 PF05767.12 gi|304314741|ref|YP_003849888.1| - 2.4 8.4 7.1 1.5 9.0 0.3 2.1 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 DUF166 PF02593.14 gi|304314742|ref|YP_003849889.1| - 2.9e-62 210.1 0.0 3.7e-62 209.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function Fer4_6 PF12837.7 gi|304314742|ref|YP_003849889.1| - 2.2e-06 27.5 10.4 0.0012 18.9 3.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|304314742|ref|YP_003849889.1| - 1.4e-05 24.7 9.2 4.9e-05 23.0 3.2 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304314742|ref|YP_003849889.1| - 0.00018 22.1 9.7 0.0031 18.1 10.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314742|ref|YP_003849889.1| - 0.00075 19.6 10.1 0.0047 17.0 10.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314742|ref|YP_003849889.1| - 0.00095 20.1 8.7 0.005 17.8 3.2 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|304314742|ref|YP_003849889.1| - 0.0044 17.2 7.1 0.0085 16.2 7.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314742|ref|YP_003849889.1| - 0.0079 16.3 9.6 0.067 13.3 9.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304314742|ref|YP_003849889.1| - 0.012 15.6 12.8 0.37 11.0 1.5 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304314742|ref|YP_003849889.1| - 0.068 13.6 8.9 0.65 10.5 8.9 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314742|ref|YP_003849889.1| - 0.5 11.0 10.3 7.3 7.2 10.3 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain TP_methylase PF00590.20 gi|304314743|ref|YP_003849890.1| - 7.1e-38 130.7 0.1 8.9e-38 130.4 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|304314743|ref|YP_003849890.1| - 0.13 12.7 0.0 0.26 11.6 0.0 1.6 1 1 0 1 1 1 0 Radical SAM superfamily NikR_C PF08753.11 gi|304314744|ref|YP_003849891.1| - 3.4e-16 59.2 0.4 6.7e-16 58.2 0.4 1.5 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|304314744|ref|YP_003849891.1| - 2.5e-09 36.7 1.2 7e-09 35.3 1.2 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParD_antitoxin PF03693.14 gi|304314744|ref|YP_003849891.1| - 0.0028 18.0 0.2 0.0067 16.8 0.1 1.7 2 0 0 2 2 2 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH RHH_8 PF17723.1 gi|304314744|ref|YP_003849891.1| - 0.01 16.0 0.1 0.016 15.4 0.1 1.4 1 1 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family DUF1837 PF08878.11 gi|304314744|ref|YP_003849891.1| - 0.031 14.0 0.2 0.038 13.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1837) ZnuA PF01297.17 gi|304314745|ref|YP_003849892.1| - 7.2e-61 205.8 0.0 9.4e-61 205.4 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|304314746|ref|YP_003849893.1| - 2.5e-31 109.0 0.0 3.5e-31 108.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|304314746|ref|YP_003849893.1| - 8.9e-14 52.0 0.7 5.3e-07 29.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|304314746|ref|YP_003849893.1| - 4.2e-05 23.1 0.1 0.087 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|304314746|ref|YP_003849893.1| - 0.0011 19.4 0.0 0.0016 18.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|304314746|ref|YP_003849893.1| - 0.0057 16.4 0.0 0.22 11.2 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|304314746|ref|YP_003849893.1| - 0.008 16.5 0.3 0.017 15.4 0.3 1.9 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|304314746|ref|YP_003849893.1| - 0.01 16.1 0.3 0.42 10.9 0.3 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|304314746|ref|YP_003849893.1| - 0.011 16.3 0.1 0.017 15.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|304314746|ref|YP_003849893.1| - 0.039 13.4 0.0 0.084 12.3 0.0 1.5 2 0 0 2 2 2 0 PhoH-like protein AAA_29 PF13555.6 gi|304314746|ref|YP_003849893.1| - 0.045 13.5 0.1 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|304314746|ref|YP_003849893.1| - 0.048 13.4 0.3 5.7 6.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|304314746|ref|YP_003849893.1| - 0.051 13.3 0.1 0.067 12.9 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|304314746|ref|YP_003849893.1| - 0.061 13.4 0.0 0.63 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|304314746|ref|YP_003849893.1| - 0.068 13.6 1.5 0.66 10.4 1.5 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|304314746|ref|YP_003849893.1| - 0.11 11.2 0.2 2 7.1 0.2 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|304314746|ref|YP_003849893.1| - 0.12 12.3 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|304314746|ref|YP_003849893.1| - 0.2 11.2 0.9 0.99 9.0 0.0 2.4 3 1 0 3 3 3 0 AAA domain Rad17 PF03215.15 gi|304314746|ref|YP_003849893.1| - 0.21 11.5 0.0 0.34 10.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain ABC-3 PF00950.17 gi|304314747|ref|YP_003849894.1| - 1.4e-85 286.9 28.0 1.6e-85 286.7 28.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|304314747|ref|YP_003849894.1| - 2e-05 23.7 28.5 6.5e-05 22.1 28.7 1.8 1 1 0 1 1 1 1 FecCD transport family DUF2642 PF10842.8 gi|304314748|ref|YP_003849895.1| - 0.013 15.4 0.0 0.022 14.6 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2642) DUF150_C PF17384.2 gi|304314748|ref|YP_003849895.1| - 0.014 15.5 0.0 0.016 15.3 0.0 1.1 1 0 0 1 1 1 0 RimP C-terminal SH3 domain Rib_5-P_isom_A PF06026.14 gi|304314749|ref|YP_003849896.1| - 2e-65 219.6 0.1 2.4e-65 219.3 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|304314749|ref|YP_003849896.1| - 5.6e-07 29.6 0.1 0.00022 21.2 0.1 2.1 1 1 0 1 1 1 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|304314749|ref|YP_003849896.1| - 0.048 12.8 0.0 0.068 12.3 0.0 1.4 1 1 0 1 1 1 0 Putative sugar-binding domain UPF0179 PF03684.13 gi|304314750|ref|YP_003849897.1| - 7.8e-47 158.7 0.2 8.7e-47 158.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) RseC_MucC PF04246.12 gi|304314750|ref|YP_003849897.1| - 0.13 12.2 0.1 0.22 11.5 0.1 1.3 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Fe-ADH_2 PF13685.6 gi|304314751|ref|YP_003849898.1| - 2.4e-72 243.7 3.9 3.1e-72 243.3 3.9 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|304314751|ref|YP_003849898.1| - 1.2e-22 80.2 6.8 2.3e-21 76.0 6.8 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|304314751|ref|YP_003849898.1| - 6.9e-10 38.5 2.7 3.6e-09 36.2 2.7 2.0 1 1 0 1 1 1 1 3-dehydroquinate synthase tRNA-synt_2b PF00587.25 gi|304314752|ref|YP_003849899.1| - 5.1e-30 104.8 0.0 7.9e-30 104.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|304314752|ref|YP_003849899.1| - 1.2e-22 79.9 0.1 1.2e-20 73.4 0.0 2.7 2 0 0 2 2 2 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|304314752|ref|YP_003849899.1| - 9.7e-13 48.1 0.1 2.6e-12 46.8 0.1 1.8 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal DUF2977 PF11192.8 gi|304314752|ref|YP_003849899.1| - 0.067 13.3 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2977) TIR_2 PF13676.6 gi|304314752|ref|YP_003849899.1| - 0.11 13.1 0.0 0.48 11.0 0.0 2.1 1 0 0 1 1 1 0 TIR domain CofC PF01983.16 gi|304314754|ref|YP_003849901.1| - 6e-94 313.2 0.0 6.9e-94 313.1 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|304314754|ref|YP_003849901.1| - 9.2e-10 39.1 0.0 1.3e-09 38.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.9 gi|304314754|ref|YP_003849901.1| - 0.00019 21.2 0.0 0.00052 19.8 0.0 1.7 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2064) Phos_pyr_kin PF08543.12 gi|304314755|ref|YP_003849902.1| - 8.2e-77 257.9 0.1 9.7e-77 257.7 0.1 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|304314755|ref|YP_003849902.1| - 2.8e-09 36.7 0.1 3.6e-09 36.4 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|304314755|ref|YP_003849902.1| - 0.018 14.6 1.0 0.062 12.8 1.0 1.9 1 1 0 1 1 1 0 Carbohydrate kinase Adenylsucc_synt PF00709.21 gi|304314756|ref|YP_003849903.1| - 8.1e-90 301.7 0.9 4.9e-45 154.2 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase MAF_flag10 PF01973.18 gi|304314756|ref|YP_003849903.1| - 0.032 13.9 0.0 0.062 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF115 CytochromB561_N PF09786.9 gi|304314756|ref|YP_003849903.1| - 0.062 12.3 0.0 0.079 12.0 0.0 1.1 1 0 0 1 1 1 0 Cytochrome B561, N terminal Mg_chelatase PF01078.21 gi|304314757|ref|YP_003849904.1| - 5.3e-11 42.3 0.0 3.3e-09 36.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|304314757|ref|YP_003849904.1| - 0.00039 20.4 0.0 0.036 14.1 0.0 2.9 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|304314757|ref|YP_003849904.1| - 0.0033 17.8 0.1 0.022 15.2 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|304314757|ref|YP_003849904.1| - 0.0043 16.7 0.1 0.014 15.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|304314757|ref|YP_003849904.1| - 0.011 16.1 0.1 0.056 13.8 0.1 2.2 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|304314757|ref|YP_003849904.1| - 0.015 15.6 0.1 0.072 13.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|304314757|ref|YP_003849904.1| - 0.02 14.7 0.0 0.2 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|304314757|ref|YP_003849904.1| - 0.022 15.1 0.0 0.52 10.7 0.0 2.3 2 0 0 2 2 2 0 RNA helicase DUF2075 PF09848.9 gi|304314757|ref|YP_003849904.1| - 0.032 13.5 0.1 1.6 7.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|304314757|ref|YP_003849904.1| - 0.059 13.1 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|304314757|ref|YP_003849904.1| - 0.071 12.6 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region TIP49 PF06068.13 gi|304314757|ref|YP_003849904.1| - 0.12 11.5 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|304314757|ref|YP_003849904.1| - 0.15 11.8 0.2 1.6 8.4 0.1 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_19 PF13245.6 gi|304314757|ref|YP_003849904.1| - 0.22 11.9 0.3 0.66 10.3 0.2 1.8 2 0 0 2 2 2 0 AAA domain DUF2313 PF10076.9 gi|304314758|ref|YP_003849905.1| - 0.024 14.5 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2313) NTP_transf_7 PF07984.12 gi|304314758|ref|YP_003849905.1| - 0.031 13.5 0.4 0.042 13.1 0.4 1.2 1 0 0 1 1 1 0 Nucleotidyltransferase Glyco_trans_4_5 PF16994.5 gi|304314758|ref|YP_003849905.1| - 0.17 11.4 0.3 0.29 10.7 0.3 1.5 1 0 0 1 1 1 0 Glycosyl-transferase family 4 zinc_ribbon_2 PF13240.6 gi|304314759|ref|YP_003849906.1| - 2.5e-07 30.2 6.2 2.5e-07 30.2 6.2 1.8 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|304314759|ref|YP_003849906.1| - 1.2e-06 28.4 2.8 2.3e-06 27.5 2.8 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|304314759|ref|YP_003849906.1| - 0.0069 15.8 2.4 0.0069 15.8 2.4 1.9 2 0 0 2 2 2 1 zinc-ribbon domain PknG_rubred PF16919.5 gi|304314759|ref|YP_003849906.1| - 0.031 14.5 1.8 0.031 14.5 1.8 1.7 1 1 1 2 2 2 0 Protein kinase G rubredoxin domain zf_UBZ PF18439.1 gi|304314759|ref|YP_003849906.1| - 0.032 13.8 4.9 0.44 10.2 0.4 2.3 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 gi|304314759|ref|YP_003849906.1| - 0.038 14.8 4.3 0.082 13.7 4.3 1.5 1 0 0 1 1 1 0 zinc-ribbon family Nudix_N_2 PF14803.6 gi|304314759|ref|YP_003849906.1| - 0.052 13.5 5.1 0.085 12.8 0.4 2.5 3 0 0 3 3 3 0 Nudix N-terminal DUF2116 PF09889.9 gi|304314759|ref|YP_003849906.1| - 0.061 13.3 9.3 0.33 11.0 2.6 2.3 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) HypA PF01155.19 gi|304314759|ref|YP_003849906.1| - 0.14 12.2 2.0 0.2 11.7 2.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|304314759|ref|YP_003849906.1| - 0.42 10.8 5.1 1.4 9.1 5.1 1.8 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DHHC PF01529.20 gi|304314759|ref|YP_003849906.1| - 0.52 10.4 6.8 0.37 10.9 2.1 2.1 2 0 0 2 2 2 0 DHHC palmitoyltransferase GFA PF04828.14 gi|304314759|ref|YP_003849906.1| - 0.78 10.1 3.3 1.5 9.2 2.8 1.8 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme GATA PF00320.27 gi|304314759|ref|YP_003849906.1| - 1.6 8.4 5.8 20 4.9 5.9 2.2 1 1 1 2 2 2 0 GATA zinc finger YhfH PF14149.6 gi|304314759|ref|YP_003849906.1| - 1.8 8.6 8.0 0.65 10.0 0.9 2.4 1 1 1 2 2 2 0 YhfH-like protein zf-NADH-PPase PF09297.11 gi|304314759|ref|YP_003849906.1| - 3 7.6 6.5 1.2 8.9 0.2 2.6 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Tnp_zf-ribbon_2 PF13842.6 gi|304314759|ref|YP_003849906.1| - 3.4 8.6 9.4 0.38 11.6 4.5 2.0 3 1 0 3 3 1 0 DDE_Tnp_1-like zinc-ribbon zf-dskA_traR PF01258.17 gi|304314759|ref|YP_003849906.1| - 5 7.1 7.4 13 5.8 1.1 2.3 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DNA_binding_1 PF01035.20 gi|304314760|ref|YP_003849907.1| - 2e-26 91.9 0.0 2.6e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Telomere_Sde2_2 PF13297.6 gi|304314760|ref|YP_003849907.1| - 0.13 11.9 0.1 0.23 11.1 0.1 1.4 1 0 0 1 1 1 0 Telomere stability C-terminal HisKA_2 PF07568.12 gi|304314761|ref|YP_003849908.1| - 1.7e-27 95.3 6.7 4.7e-27 93.9 6.7 1.8 1 0 0 1 1 1 1 Histidine kinase PAS PF00989.25 gi|304314761|ref|YP_003849908.1| - 1.2e-14 54.3 0.1 2.4e-09 37.2 0.1 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|304314761|ref|YP_003849908.1| - 1.7e-13 50.7 0.0 1.4e-05 25.3 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|304314761|ref|YP_003849908.1| - 2.5e-11 43.7 0.1 5.3e-05 23.4 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|304314761|ref|YP_003849908.1| - 2.7e-10 40.0 0.0 1.7e-07 31.1 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|304314761|ref|YP_003849908.1| - 1.9e-09 37.7 0.0 1.8e-06 28.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold HWE_HK PF07536.14 gi|304314761|ref|YP_003849908.1| - 3.3e-06 27.7 1.0 7.2e-06 26.6 1.0 1.6 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|304314761|ref|YP_003849908.1| - 0.00016 21.6 0.1 0.0003 20.7 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|304314761|ref|YP_003849908.1| - 0.00023 21.6 0.1 0.00086 19.8 0.1 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|304314761|ref|YP_003849908.1| - 0.005 16.7 0.1 0.0098 15.7 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L27 PF02828.16 gi|304314761|ref|YP_003849908.1| - 0.32 10.8 1.4 0.74 9.6 1.4 1.7 1 0 0 1 1 1 0 L27 domain MgtE PF01769.16 gi|304314762|ref|YP_003849909.1| - 3.6e-17 62.9 9.7 3.6e-17 62.9 9.7 1.7 2 0 0 2 2 2 1 Divalent cation transporter CBS PF00571.28 gi|304314762|ref|YP_003849909.1| - 3.4e-16 59.4 1.2 6e-09 36.2 0.2 2.6 2 0 0 2 2 2 2 CBS domain Spc7 PF08317.11 gi|304314763|ref|YP_003849910.1| - 0.0014 17.6 11.0 0.0038 16.2 4.4 2.0 1 1 1 2 2 2 1 Spc7 kinetochore protein KASH_CCD PF14662.6 gi|304314763|ref|YP_003849910.1| - 0.0017 18.2 11.9 0.0031 17.4 5.6 2.1 2 0 0 2 2 2 1 Coiled-coil region of CCDC155 or KASH PKcGMP_CC PF16808.5 gi|304314763|ref|YP_003849910.1| - 0.0025 17.6 14.9 0.012 15.4 4.7 3.4 3 1 1 4 4 3 2 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF3584 PF12128.8 gi|304314763|ref|YP_003849910.1| - 0.0049 14.5 3.6 0.0056 14.3 3.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) TPR_MLP1_2 PF07926.12 gi|304314763|ref|YP_003849910.1| - 0.0052 16.8 5.1 0.0076 16.3 5.1 1.4 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein DUF745 PF05335.13 gi|304314763|ref|YP_003849910.1| - 0.0087 15.8 1.4 0.011 15.5 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF745) APG6_N PF17675.1 gi|304314763|ref|YP_003849910.1| - 0.012 16.2 12.2 0.015 15.8 12.2 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region Jnk-SapK_ap_N PF09744.9 gi|304314763|ref|YP_003849910.1| - 0.017 15.3 3.2 0.017 15.3 3.2 2.0 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 JIP_LZII PF16471.5 gi|304314763|ref|YP_003849910.1| - 0.025 14.7 6.0 0.025 14.7 6.0 3.1 1 1 1 3 3 3 0 JNK-interacting protein leucine zipper II TACC_C PF05010.14 gi|304314763|ref|YP_003849910.1| - 0.027 14.2 7.4 0.049 13.4 7.4 1.4 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal CENP-F_leu_zip PF10473.9 gi|304314763|ref|YP_003849910.1| - 0.047 13.7 15.1 0.066 13.2 15.1 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.9 gi|304314763|ref|YP_003849910.1| - 0.051 12.7 4.7 0.069 12.2 4.6 1.3 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 TMPIT PF07851.13 gi|304314763|ref|YP_003849910.1| - 0.064 12.5 2.3 0.071 12.4 2.3 1.0 1 0 0 1 1 1 0 TMPIT-like protein WD40_alt PF14077.6 gi|304314763|ref|YP_003849910.1| - 0.088 12.7 1.3 0.088 12.7 1.3 3.2 2 1 1 3 3 3 0 Alternative WD40 repeat motif Fez1 PF06818.15 gi|304314763|ref|YP_003849910.1| - 0.095 13.1 6.2 0.12 12.8 6.2 1.3 1 0 0 1 1 1 0 Fez1 DUF5082 PF16888.5 gi|304314763|ref|YP_003849910.1| - 0.11 12.8 8.5 2.1 8.6 1.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) FlaC_arch PF05377.11 gi|304314763|ref|YP_003849910.1| - 0.13 12.7 0.7 0.13 12.7 0.7 3.1 2 1 0 3 3 3 0 Flagella accessory protein C (FlaC) DUF948 PF06103.11 gi|304314763|ref|YP_003849910.1| - 0.13 12.5 0.4 1.5 9.1 0.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Exonuc_VII_L PF02601.15 gi|304314763|ref|YP_003849910.1| - 0.14 11.7 2.3 0.16 11.5 2.3 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit GAS PF13851.6 gi|304314763|ref|YP_003849910.1| - 0.15 11.4 10.3 0.19 11.1 10.3 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Laminin_II PF06009.12 gi|304314763|ref|YP_003849910.1| - 0.15 12.1 5.6 0.21 11.6 5.6 1.2 1 0 0 1 1 1 0 Laminin Domain II ZapB PF06005.12 gi|304314763|ref|YP_003849910.1| - 0.17 12.4 17.3 0.051 14.0 10.4 2.4 1 1 1 2 2 2 0 Cell division protein ZapB DUF1664 PF07889.12 gi|304314763|ref|YP_003849910.1| - 0.21 11.6 4.5 0.21 11.6 2.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF4201 PF13870.6 gi|304314763|ref|YP_003849910.1| - 0.22 11.3 11.7 0.25 11.1 11.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) Sec2p PF06428.11 gi|304314763|ref|YP_003849910.1| - 0.23 11.5 10.6 7.8 6.5 3.0 2.6 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p DUF812 PF05667.11 gi|304314763|ref|YP_003849910.1| - 0.29 10.0 9.2 0.69 8.7 3.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Med4 PF10018.9 gi|304314763|ref|YP_003849910.1| - 0.3 10.7 4.8 0.45 10.2 4.7 1.5 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4200 PF13863.6 gi|304314763|ref|YP_003849910.1| - 0.31 11.4 11.3 0.87 10.0 11.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) CAGE1 PF15066.6 gi|304314763|ref|YP_003849910.1| - 0.39 9.4 9.3 0.47 9.1 9.3 1.2 1 0 0 1 1 1 0 Cancer-associated gene protein 1 family CENP-H PF05837.12 gi|304314763|ref|YP_003849910.1| - 0.4 11.1 7.0 1 9.8 7.0 1.7 1 1 0 1 1 1 0 Centromere protein H (CENP-H) YabA PF06156.13 gi|304314763|ref|YP_003849910.1| - 0.49 11.1 9.4 5 7.8 9.4 2.0 1 1 0 1 1 1 0 Initiation control protein YabA BLOC1_2 PF10046.9 gi|304314763|ref|YP_003849910.1| - 0.5 10.7 7.7 3.6 8.0 0.7 2.7 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Snapin_Pallidin PF14712.6 gi|304314763|ref|YP_003849910.1| - 0.62 10.5 7.1 0.66 10.4 4.2 2.4 1 1 1 2 2 2 0 Snapin/Pallidin Cortex-I_coil PF09304.10 gi|304314763|ref|YP_003849910.1| - 0.65 10.2 14.3 0.31 11.3 9.5 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil UPF0242 PF06785.11 gi|304314763|ref|YP_003849910.1| - 0.66 10.1 13.8 6.7 6.8 13.8 1.9 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus zf-C4H2 PF10146.9 gi|304314763|ref|YP_003849910.1| - 0.69 10.2 4.9 0.82 9.9 4.9 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein Seryl_tRNA_N PF02403.22 gi|304314763|ref|YP_003849910.1| - 0.71 10.1 9.5 3.8 7.8 9.5 2.0 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain SHE3 PF17078.5 gi|304314763|ref|YP_003849910.1| - 0.72 9.5 11.2 5.6 6.6 11.2 1.9 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 Fmp27_WPPW PF10359.9 gi|304314763|ref|YP_003849910.1| - 0.79 8.5 7.8 2.7 6.7 7.8 1.8 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Tropomyosin_1 PF12718.7 gi|304314763|ref|YP_003849910.1| - 0.92 9.7 15.2 1.8 8.7 15.2 1.5 1 1 0 1 1 1 0 Tropomyosin like TMF_TATA_bd PF12325.8 gi|304314763|ref|YP_003849910.1| - 0.92 9.8 17.2 3.4 7.9 17.2 1.8 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DivIC PF04977.15 gi|304314763|ref|YP_003849910.1| - 0.98 9.2 15.7 1.9 8.3 1.1 3.1 1 1 2 3 3 3 0 Septum formation initiator FAM76 PF16046.5 gi|304314763|ref|YP_003849910.1| - 1 8.6 8.0 1.2 8.4 8.0 1.1 1 0 0 1 1 1 0 FAM76 protein COG2 PF06148.11 gi|304314763|ref|YP_003849910.1| - 1.8 8.7 6.9 1.6 8.8 4.0 1.9 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 FapA PF03961.13 gi|304314763|ref|YP_003849910.1| - 1.9 7.0 6.2 2.2 6.8 6.2 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Chibby PF14645.6 gi|304314763|ref|YP_003849910.1| - 2 8.8 7.9 40 4.7 7.9 2.2 1 1 0 1 1 1 0 Chibby family TMF_DNA_bd PF12329.8 gi|304314763|ref|YP_003849910.1| - 2.2 8.4 17.3 0.97 9.5 2.5 2.6 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding ATG16 PF08614.11 gi|304314763|ref|YP_003849910.1| - 2.2 8.5 13.6 3.5 7.8 11.8 1.8 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Pox_A_type_inc PF04508.12 gi|304314763|ref|YP_003849910.1| - 2.5 8.1 21.0 0.47 10.4 2.8 4.9 3 2 2 5 5 5 0 Viral A-type inclusion protein repeat Ax_dynein_light PF10211.9 gi|304314763|ref|YP_003849910.1| - 2.6 8.0 12.5 2.5 8.0 6.4 2.2 1 1 1 2 2 2 0 Axonemal dynein light chain SlyX PF04102.12 gi|304314763|ref|YP_003849910.1| - 2.6 8.7 11.0 21 5.8 9.3 2.5 1 1 1 2 2 2 0 SlyX Swi5 PF07061.11 gi|304314763|ref|YP_003849910.1| - 2.7 8.1 7.5 1.7e+02 2.4 7.5 2.7 1 1 0 1 1 1 0 Swi5 HMMR_N PF15905.5 gi|304314763|ref|YP_003849910.1| - 3 7.2 12.4 5.7 6.3 12.4 1.5 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal bZIP_2 PF07716.15 gi|304314763|ref|YP_003849910.1| - 3.6 7.8 15.3 5.2 7.2 1.0 3.4 2 1 1 3 3 3 0 Basic region leucine zipper ABC_tran_CTD PF16326.5 gi|304314763|ref|YP_003849910.1| - 4.2 7.7 13.6 0.93 9.8 7.3 2.5 1 1 1 2 2 2 0 ABC transporter C-terminal domain DUF641 PF04859.12 gi|304314763|ref|YP_003849910.1| - 4.3 7.7 8.0 35 4.7 8.0 2.1 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) SWIRM-assoc_1 PF16495.5 gi|304314763|ref|YP_003849910.1| - 5.4 7.0 11.2 0.84 9.6 6.2 2.1 1 1 1 2 2 2 0 SWIRM-associated region 1 DUF2205 PF10224.9 gi|304314763|ref|YP_003849910.1| - 5.6 7.0 8.8 1.2 9.2 4.4 2.0 1 1 2 3 3 3 0 Short coiled-coil protein CorA PF01544.18 gi|304314763|ref|YP_003849910.1| - 7.5 5.8 8.1 8.8 5.6 8.1 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Spc24 PF08286.11 gi|304314763|ref|YP_003849910.1| - 7.7 6.8 11.6 13 6.1 5.2 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 XhlA PF10779.9 gi|304314763|ref|YP_003849910.1| - 8.2 6.7 11.9 12 6.2 6.0 2.7 1 1 2 3 3 3 0 Haemolysin XhlA DUF4600 PF15372.6 gi|304314763|ref|YP_003849910.1| - 9.5 6.7 11.8 31 5.0 0.2 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4600) Rhodanese PF00581.20 gi|304314764|ref|YP_003849911.1| - 1.7e-30 105.7 0.0 2.1e-16 60.3 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain CPBP PF02517.16 gi|304314765|ref|YP_003849912.1| - 9.3e-19 67.6 6.9 9.3e-19 67.6 6.9 2.7 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease DUF2953 PF11167.8 gi|304314767|ref|YP_003849914.1| - 1.1e-08 34.9 0.1 2.7e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) Spore_YtfJ PF09579.10 gi|304314769|ref|YP_003849916.1| - 6.3e-12 45.5 4.0 8.9e-12 45.0 4.0 1.2 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) CARDB PF07705.11 gi|304314770|ref|YP_003849917.1| - 9.2e-06 25.9 0.4 7.4e-05 23.0 0.1 2.1 1 1 1 2 2 2 1 CARDB TRAP_beta PF05753.14 gi|304314770|ref|YP_003849917.1| - 0.00039 19.9 0.1 0.0005 19.5 0.1 1.2 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) DUF11 PF01345.18 gi|304314770|ref|YP_003849917.1| - 0.00046 20.4 0.4 0.013 15.8 0.0 2.5 1 1 2 3 3 3 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|304314770|ref|YP_003849917.1| - 0.00066 19.9 0.0 0.55 10.5 0.0 2.7 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF1616 PF07760.11 gi|304314770|ref|YP_003849917.1| - 0.0018 17.8 0.3 0.0023 17.4 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Arch_flagellin PF01917.16 gi|304314770|ref|YP_003849917.1| - 0.021 15.0 3.3 0.094 12.9 3.3 1.9 1 1 0 1 1 1 0 Archaebacterial flagellin GhoS PF11080.8 gi|304314770|ref|YP_003849917.1| - 0.099 12.6 0.0 0.8 9.7 0.0 2.0 2 0 0 2 2 2 0 Endoribonuclease GhoS GyrI-like PF06445.15 gi|304314771|ref|YP_003849918.1| - 1.6e-28 100.0 0.3 1.8e-28 99.8 0.3 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|304314771|ref|YP_003849918.1| - 6.4e-09 36.1 0.0 7.3e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Integron-associated effector binding protein EamA PF00892.20 gi|304314772|ref|YP_003849919.1| - 9.5e-26 90.6 16.2 1e-25 90.5 16.2 1.0 1 0 0 1 1 1 1 EamA-like transporter family TPT PF03151.16 gi|304314772|ref|YP_003849919.1| - 9.3e-07 28.5 6.7 2.2e-06 27.2 5.4 1.8 1 1 1 2 2 2 2 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|304314772|ref|YP_003849919.1| - 1.6e-06 28.1 1.0 1.6e-06 28.1 1.0 1.6 2 1 0 2 2 2 1 Putative transmembrane family 234 O-antigen_lig PF13425.6 gi|304314772|ref|YP_003849919.1| - 0.019 13.8 4.7 0.024 13.5 4.6 1.2 1 1 0 1 1 1 0 O-antigen ligase like membrane protein HTH_Bact PF18768.1 gi|304314772|ref|YP_003849919.1| - 0.04 13.5 1.0 0.44 10.2 0.4 2.1 2 0 0 2 2 2 0 Helix-turn-helix bacterial domain UAA PF08449.11 gi|304314772|ref|YP_003849919.1| - 0.098 11.8 4.1 0.12 11.5 3.7 1.3 1 1 0 1 1 1 0 UAA transporter family DUF805 PF05656.14 gi|304314772|ref|YP_003849919.1| - 8.5 6.8 8.0 17 5.9 7.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF805) Epimerase PF01370.21 gi|304314773|ref|YP_003849920.1| - 8.8e-61 205.4 0.0 1.1e-60 205.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|304314773|ref|YP_003849920.1| - 1.2e-57 195.8 0.0 1.6e-57 195.4 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|304314773|ref|YP_003849920.1| - 5.8e-16 58.4 0.0 1.3e-15 57.3 0.0 1.5 2 0 0 2 2 2 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|304314773|ref|YP_003849920.1| - 8.6e-15 54.5 0.0 2e-14 53.3 0.0 1.5 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|304314773|ref|YP_003849920.1| - 1.3e-12 47.5 0.0 2.3e-11 43.4 0.0 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|304314773|ref|YP_003849920.1| - 2.1e-08 34.3 0.0 3e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|304314773|ref|YP_003849920.1| - 2.9e-07 30.3 0.0 5.1e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.12 gi|304314773|ref|YP_003849920.1| - 0.00053 19.2 0.0 0.0012 18.0 0.0 1.7 1 1 0 1 1 1 1 Male sterility protein KR PF08659.10 gi|304314773|ref|YP_003849920.1| - 0.0022 17.9 0.1 0.017 15.0 0.1 2.1 1 1 0 1 1 1 1 KR domain Virul_Fac PF10139.9 gi|304314774|ref|YP_003849921.1| - 9.9e-05 20.8 0.0 0.00015 20.2 0.0 1.1 1 0 0 1 1 1 1 Putative bacterial virulence factor PfkB PF00294.24 gi|304314774|ref|YP_003849921.1| - 0.00094 18.6 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase AAA PF00004.29 gi|304314774|ref|YP_003849921.1| - 0.0015 18.9 0.0 0.0038 17.6 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Torsin PF06309.11 gi|304314774|ref|YP_003849921.1| - 0.003 17.7 0.0 0.0055 16.8 0.0 1.3 1 0 0 1 1 1 1 Torsin AAA_7 PF12775.7 gi|304314774|ref|YP_003849921.1| - 0.0062 16.1 0.0 0.02 14.4 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|304314774|ref|YP_003849921.1| - 0.0096 15.2 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain AAA_16 PF13191.6 gi|304314774|ref|YP_003849921.1| - 0.014 15.8 0.0 0.025 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Phos_pyr_kin PF08543.12 gi|304314774|ref|YP_003849921.1| - 0.017 14.5 0.0 0.026 13.9 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase AAA_25 PF13481.6 gi|304314774|ref|YP_003849921.1| - 0.067 12.8 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|304314774|ref|YP_003849921.1| - 0.081 13.2 0.0 0.25 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|304314774|ref|YP_003849921.1| - 0.086 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.6 gi|304314774|ref|YP_003849921.1| - 0.1 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|304314774|ref|YP_003849921.1| - 0.16 10.9 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CPBP PF02517.16 gi|304314776|ref|YP_003849923.1| - 1.7e-12 47.6 1.7 1.7e-12 47.6 1.7 2.6 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease SNAP PF14938.6 gi|304314776|ref|YP_003849923.1| - 3.6e-09 36.5 5.7 1.8e-06 27.6 1.2 2.0 1 1 1 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_8 PF13181.6 gi|304314776|ref|YP_003849923.1| - 9.7e-09 34.8 3.4 0.0022 18.0 0.3 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|304314776|ref|YP_003849923.1| - 1.2e-08 35.2 4.7 0.0023 18.2 0.1 2.7 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|304314776|ref|YP_003849923.1| - 2.7e-08 33.3 10.1 3.8e-05 23.3 0.3 4.1 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|304314776|ref|YP_003849923.1| - 3.1e-08 33.1 8.0 0.0019 18.1 0.5 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|304314776|ref|YP_003849923.1| - 6.8e-08 32.1 0.0 6.2e-05 22.6 0.0 2.8 2 1 0 2 2 2 2 TPR repeat TPR_7 PF13176.6 gi|304314776|ref|YP_003849923.1| - 1.7e-06 27.6 2.6 0.33 11.1 0.1 3.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|304314776|ref|YP_003849923.1| - 3.4e-06 27.4 0.8 0.0071 17.1 0.0 3.5 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|304314776|ref|YP_003849923.1| - 2.3e-05 24.9 1.0 0.34 11.6 0.1 2.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|304314776|ref|YP_003849923.1| - 3e-05 24.4 2.9 0.15 12.7 0.3 3.0 3 0 0 3 3 2 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|304314776|ref|YP_003849923.1| - 0.0047 17.0 0.4 1.3 9.1 0.0 2.4 2 0 0 2 2 2 1 Domain of Unknown Function (DUF3856) TPR_17 PF13431.6 gi|304314776|ref|YP_003849923.1| - 0.01 16.1 0.1 1.1 9.8 0.0 3.6 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|304314776|ref|YP_003849923.1| - 0.014 14.8 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 MalT-like TPR region ANAPC3 PF12895.7 gi|304314776|ref|YP_003849923.1| - 0.031 14.5 0.4 0.17 12.1 0.1 2.4 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.18 gi|304314776|ref|YP_003849923.1| - 0.05 13.7 1.2 9.2 6.4 0.1 2.7 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain TPR_19 PF14559.6 gi|304314776|ref|YP_003849923.1| - 0.097 13.2 0.7 14 6.3 0.0 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|304314776|ref|YP_003849923.1| - 0.1 12.5 1.1 1.9 8.4 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF2225 PF09986.9 gi|304314776|ref|YP_003849923.1| - 0.13 12.0 2.1 0.2 11.4 2.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) NTP_transferase PF00483.23 gi|304314777|ref|YP_003849924.1| - 1.1e-26 93.9 0.0 1.6e-26 93.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|304314777|ref|YP_003849924.1| - 5e-11 43.2 0.0 8e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|304314777|ref|YP_003849924.1| - 0.016 15.0 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Smr PF01713.21 gi|304314777|ref|YP_003849924.1| - 0.052 13.9 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 Smr domain Rib PF08428.10 gi|304314778|ref|YP_003849925.1| - 0.023 14.6 0.7 0.051 13.6 0.7 1.6 1 0 0 1 1 1 0 Rib/alpha-like repeat DUF4330 PF14221.6 gi|304314778|ref|YP_003849925.1| - 0.19 11.9 2.4 0.4 10.9 0.4 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4330) Big_9 PF17963.1 gi|304314778|ref|YP_003849925.1| - 5.5 7.8 7.4 8.6 7.2 1.5 2.4 1 1 1 2 2 2 0 Bacterial Ig domain DUF4134 PF13572.6 gi|304314779|ref|YP_003849926.1| - 0.017 15.4 4.2 0.023 15.0 4.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4134) Mem_trans PF03547.18 gi|304314779|ref|YP_003849926.1| - 0.029 12.8 5.2 0.031 12.7 5.2 1.0 1 0 0 1 1 1 0 Membrane transport protein DUF167 PF02594.16 gi|304314780|ref|YP_003849927.1| - 1.7e-18 66.5 0.0 2.1e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF5126 PF17166.4 gi|304314780|ref|YP_003849927.1| - 0.011 15.6 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5126) DUF371 PF04027.13 gi|304314781|ref|YP_003849928.1| - 1e-49 167.9 0.1 1.1e-49 167.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Churchill PF06573.11 gi|304314781|ref|YP_003849928.1| - 0.077 13.3 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Churchill protein DUF123 PF01986.16 gi|304314782|ref|YP_003849929.1| - 1.1e-27 96.3 0.1 1.6e-27 95.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 Fer4_NifH PF00142.18 gi|304314783|ref|YP_003849930.1| - 3.3e-99 331.7 0.1 3.9e-99 331.5 0.1 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|304314783|ref|YP_003849930.1| - 2.8e-11 43.6 0.0 4.4e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|304314783|ref|YP_003849930.1| - 3e-07 30.5 0.0 6.5e-06 26.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|304314783|ref|YP_003849930.1| - 5.7e-07 29.2 0.1 4.7e-06 26.2 0.1 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|304314783|ref|YP_003849930.1| - 1.7e-05 24.1 0.0 6.2e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|304314783|ref|YP_003849930.1| - 5.4e-05 23.0 0.0 6.9e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|304314783|ref|YP_003849930.1| - 0.0015 17.6 0.2 0.0023 17.0 0.2 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|304314783|ref|YP_003849930.1| - 0.0018 18.6 0.0 0.0029 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|304314783|ref|YP_003849930.1| - 0.0072 15.9 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain TPP_enzyme_N PF02776.18 gi|304314783|ref|YP_003849930.1| - 0.017 14.8 0.0 3.3 7.3 0.0 2.5 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NB-ARC PF00931.22 gi|304314783|ref|YP_003849930.1| - 0.031 13.5 0.1 0.051 12.8 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.27 gi|304314783|ref|YP_003849930.1| - 0.048 14.2 0.0 0.1 13.1 0.0 1.6 2 0 0 2 2 2 0 ABC transporter UBM PF14377.6 gi|304314783|ref|YP_003849930.1| - 0.049 13.1 1.3 0.9 9.1 0.0 2.5 2 0 0 2 2 2 0 Ubiquitin binding region SRP54 PF00448.22 gi|304314783|ref|YP_003849930.1| - 0.062 12.9 0.0 0.27 10.9 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain STALD PF18185.1 gi|304314783|ref|YP_003849930.1| - 0.063 12.6 0.0 0.098 12.0 0.0 1.3 1 0 0 1 1 1 0 Sir2- and TIR-associating SLOG family AAA_22 PF13401.6 gi|304314783|ref|YP_003849930.1| - 0.064 13.5 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|304314783|ref|YP_003849930.1| - 0.067 13.6 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ATP-synt_ab PF00006.25 gi|304314783|ref|YP_003849930.1| - 0.07 12.8 0.0 0.083 12.5 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|304314783|ref|YP_003849930.1| - 0.22 11.3 0.2 0.74 9.5 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CBS PF00571.28 gi|304314784|ref|YP_003849931.1| - 2.2e-36 124.1 9.3 1.1e-18 67.4 2.2 2.2 2 0 0 2 2 2 2 CBS domain DUF3659 PF12396.8 gi|304314784|ref|YP_003849931.1| - 0.01 15.7 2.2 0.018 15.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) PRC PF05239.16 gi|304314784|ref|YP_003849931.1| - 0.011 15.8 1.2 0.7 10.0 0.1 2.5 2 0 0 2 2 2 0 PRC-barrel domain GST_N PF02798.20 gi|304314784|ref|YP_003849931.1| - 0.058 13.7 0.0 0.62 10.4 0.0 2.0 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain GAF PF01590.26 gi|304314784|ref|YP_003849931.1| - 0.07 13.8 0.1 2 9.1 0.0 2.1 1 1 1 2 2 2 0 GAF domain Trypsin_2 PF13365.6 gi|304314784|ref|YP_003849931.1| - 0.15 12.9 0.0 0.25 12.2 0.0 1.4 1 0 0 1 1 1 0 Trypsin-like peptidase domain Peptidase_U32 PF01136.19 gi|304314785|ref|YP_003849932.1| - 7.1e-84 280.6 0.0 1.3e-83 279.8 0.0 1.4 2 0 0 2 2 2 1 Peptidase family U32 GATase_6 PF13522.6 gi|304314786|ref|YP_003849933.1| - 1.4e-23 83.5 0.0 2.6e-23 82.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|304314786|ref|YP_003849933.1| - 4.6e-23 81.4 0.0 1.2e-22 80.1 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|304314786|ref|YP_003849933.1| - 1.8e-12 46.7 0.0 8.9e-11 41.2 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|304314786|ref|YP_003849933.1| - 1.1e-07 31.5 0.0 3.8e-07 29.8 0.0 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Toprim PF01751.22 gi|304314787|ref|YP_003849934.1| - 9.5e-07 29.0 2.6 1.6e-06 28.3 0.2 2.3 2 1 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|304314787|ref|YP_003849934.1| - 0.0002 21.7 0.0 0.00053 20.4 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Mod_r PF07200.13 gi|304314787|ref|YP_003849934.1| - 0.00065 19.8 4.3 0.0011 19.1 4.3 1.3 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein Rootletin PF15035.6 gi|304314787|ref|YP_003849934.1| - 0.00069 19.7 4.0 0.00088 19.4 4.0 1.2 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion CENP-H PF05837.12 gi|304314787|ref|YP_003849934.1| - 0.0014 19.0 4.6 0.0026 18.2 4.6 1.4 1 0 0 1 1 1 1 Centromere protein H (CENP-H) Spc7 PF08317.11 gi|304314787|ref|YP_003849934.1| - 0.002 17.1 6.9 0.0029 16.6 6.9 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein APG6_N PF17675.1 gi|304314787|ref|YP_003849934.1| - 0.0046 17.5 11.2 0.0077 16.8 11.2 1.2 1 0 0 1 1 1 1 Apg6 coiled-coil region Fez1 PF06818.15 gi|304314787|ref|YP_003849934.1| - 0.0053 17.2 4.2 0.0086 16.6 4.2 1.3 1 0 0 1 1 1 1 Fez1 Seryl_tRNA_N PF02403.22 gi|304314787|ref|YP_003849934.1| - 0.0059 16.8 8.6 0.0067 16.6 7.2 1.8 2 0 0 2 2 1 1 Seryl-tRNA synthetase N-terminal domain DUF848 PF05852.11 gi|304314787|ref|YP_003849934.1| - 0.0083 16.2 4.5 0.014 15.5 4.5 1.3 1 0 0 1 1 1 1 Gammaherpesvirus protein of unknown function (DUF848) GIT_CC PF16559.5 gi|304314787|ref|YP_003849934.1| - 0.017 14.9 2.1 0.078 12.9 0.4 2.2 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor HMMR_N PF15905.5 gi|304314787|ref|YP_003849934.1| - 0.018 14.5 6.0 0.026 14.0 6.0 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal RapA_C PF12137.8 gi|304314787|ref|YP_003849934.1| - 0.019 14.0 1.0 0.027 13.5 1.0 1.2 1 0 0 1 1 1 0 RNA polymerase recycling family C-terminal Csm1_N PF18504.1 gi|304314787|ref|YP_003849934.1| - 0.024 15.0 7.6 0.18 12.2 7.7 2.2 1 1 1 2 2 2 0 Csm1 N-terminal domain EzrA PF06160.12 gi|304314787|ref|YP_003849934.1| - 0.029 12.5 8.3 0.041 12.1 7.7 1.5 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Toprim_3 PF13362.6 gi|304314787|ref|YP_003849934.1| - 0.032 14.6 0.1 0.11 12.9 0.0 2.0 2 0 0 2 2 1 0 Toprim domain YabA PF06156.13 gi|304314787|ref|YP_003849934.1| - 0.033 14.8 7.5 0.18 12.5 6.7 2.1 1 1 1 2 2 2 0 Initiation control protein YabA Fer2_BFD PF04324.15 gi|304314787|ref|YP_003849934.1| - 0.043 14.2 0.5 0.17 12.2 0.1 2.2 2 0 0 2 2 1 0 BFD-like [2Fe-2S] binding domain UPF0242 PF06785.11 gi|304314787|ref|YP_003849934.1| - 0.048 13.8 4.8 0.075 13.1 4.8 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus ATG16 PF08614.11 gi|304314787|ref|YP_003849934.1| - 0.05 13.8 8.1 0.076 13.2 8.1 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Laminin_II PF06009.12 gi|304314787|ref|YP_003849934.1| - 0.054 13.5 4.7 0.096 12.7 4.7 1.4 1 0 0 1 1 1 0 Laminin Domain II CLZ PF16526.5 gi|304314787|ref|YP_003849934.1| - 0.054 13.8 7.2 0.51 10.7 1.6 2.4 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels GAS PF13851.6 gi|304314787|ref|YP_003849934.1| - 0.061 12.7 9.4 0.29 10.4 9.4 1.9 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Golgin_A5 PF09787.9 gi|304314787|ref|YP_003849934.1| - 0.065 12.7 5.3 0.093 12.2 5.3 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 Toprim_4 PF13662.6 gi|304314787|ref|YP_003849934.1| - 0.077 13.5 3.2 0.088 13.3 0.4 2.5 2 2 0 2 2 2 0 Toprim domain BRE1 PF08647.11 gi|304314787|ref|YP_003849934.1| - 0.1 12.7 6.6 0.16 12.0 6.6 1.3 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase ZapB PF06005.12 gi|304314787|ref|YP_003849934.1| - 0.12 12.8 11.9 2 8.9 10.8 2.3 1 1 1 2 2 2 0 Cell division protein ZapB KASH_CCD PF14662.6 gi|304314787|ref|YP_003849934.1| - 0.14 12.0 11.7 0.58 10.0 11.6 1.8 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH FapA PF03961.13 gi|304314787|ref|YP_003849934.1| - 0.15 10.6 7.1 0.21 10.1 7.1 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Fmp27_WPPW PF10359.9 gi|304314787|ref|YP_003849934.1| - 0.19 10.6 1.1 0.25 10.1 1.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain bZIP_1 PF00170.21 gi|304314787|ref|YP_003849934.1| - 0.19 11.8 11.3 2.7 8.2 2.6 2.4 1 1 1 2 2 2 0 bZIP transcription factor MetOD2 PF18548.1 gi|304314787|ref|YP_003849934.1| - 0.24 11.5 4.8 5.5 7.2 0.7 2.8 3 0 0 3 3 2 0 Metanogen output domain 2 CENP-F_leu_zip PF10473.9 gi|304314787|ref|YP_003849934.1| - 0.26 11.3 13.6 0.7 9.9 13.7 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DivIC PF04977.15 gi|304314787|ref|YP_003849934.1| - 0.28 11.0 9.8 1.8 8.4 1.4 2.3 1 1 1 2 2 2 0 Septum formation initiator CorA PF01544.18 gi|304314787|ref|YP_003849934.1| - 0.3 10.4 2.6 0.47 9.7 2.6 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF1664 PF07889.12 gi|304314787|ref|YP_003849934.1| - 0.3 11.1 4.0 0.2 11.7 2.0 1.8 2 1 0 2 2 1 0 Protein of unknown function (DUF1664) XhlA PF10779.9 gi|304314787|ref|YP_003849934.1| - 0.32 11.2 7.3 1.1 9.5 2.0 2.5 1 1 1 2 2 2 0 Haemolysin XhlA TPR_MLP1_2 PF07926.12 gi|304314787|ref|YP_003849934.1| - 0.32 11.1 8.5 2.1 8.4 7.8 2.1 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF5082 PF16888.5 gi|304314787|ref|YP_003849934.1| - 0.32 11.3 4.0 0.54 10.6 1.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) KxDL PF10241.9 gi|304314787|ref|YP_003849934.1| - 0.35 11.2 1.5 8.4 6.7 0.1 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein AcylCoA_dehyd_C PF12186.8 gi|304314787|ref|YP_003849934.1| - 0.4 10.8 2.4 2.3 8.4 0.4 2.3 1 1 0 2 2 2 0 Acyl-CoA dehydrogenase C terminal Prefoldin_2 PF01920.20 gi|304314787|ref|YP_003849934.1| - 0.41 10.6 11.1 13 5.8 11.1 2.3 1 1 0 1 1 1 0 Prefoldin subunit CCDC-167 PF15188.6 gi|304314787|ref|YP_003849934.1| - 0.43 11.0 12.2 1.1 9.7 2.4 2.8 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 HAP1_N PF04849.13 gi|304314787|ref|YP_003849934.1| - 0.48 9.6 10.8 1.2 8.3 4.7 2.1 1 1 1 2 2 2 0 HAP1 N-terminal conserved region PI3K_P85_iSH2 PF16454.5 gi|304314787|ref|YP_003849934.1| - 0.5 9.9 7.1 1 8.9 5.0 2.1 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Snapin_Pallidin PF14712.6 gi|304314787|ref|YP_003849934.1| - 0.55 10.7 4.4 1.2 9.6 4.4 1.5 1 0 0 1 1 1 0 Snapin/Pallidin Atg14 PF10186.9 gi|304314787|ref|YP_003849934.1| - 0.57 9.2 5.0 0.83 8.7 5.0 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Fib_alpha PF08702.10 gi|304314787|ref|YP_003849934.1| - 0.66 10.2 2.8 1.1 9.4 2.8 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family TSKS PF15358.6 gi|304314787|ref|YP_003849934.1| - 0.7 8.2 4.9 0.95 7.8 4.9 1.1 1 0 0 1 1 1 0 Testis-specific serine kinase substrate DUF5320 PF17253.2 gi|304314787|ref|YP_003849934.1| - 0.85 10.7 4.1 0.85 10.7 0.6 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5320) TMF_TATA_bd PF12325.8 gi|304314787|ref|YP_003849934.1| - 0.9 9.8 11.1 2.6 8.3 10.6 1.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding TMF_DNA_bd PF12329.8 gi|304314787|ref|YP_003849934.1| - 1.2 9.2 12.1 2 8.5 12.1 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding GrpE PF01025.19 gi|304314787|ref|YP_003849934.1| - 1.5 8.4 9.6 31 4.2 9.6 2.2 1 1 0 1 1 1 0 GrpE Prefoldin PF02996.17 gi|304314787|ref|YP_003849934.1| - 1.5 8.7 7.1 13 5.7 1.4 3.0 2 1 0 3 3 3 0 Prefoldin subunit TSC22 PF01166.18 gi|304314787|ref|YP_003849934.1| - 3.1 8.2 14.9 3.5 8.0 3.1 2.9 3 0 0 3 3 2 0 TSC-22/dip/bun family Med9 PF07544.13 gi|304314787|ref|YP_003849934.1| - 3.9 7.6 6.5 5.3 7.2 0.4 2.7 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Spc24 PF08286.11 gi|304314787|ref|YP_003849934.1| - 4.3 7.6 9.8 1.9 8.8 2.5 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 zf-C4H2 PF10146.9 gi|304314787|ref|YP_003849934.1| - 5.2 7.3 6.3 7.6 6.8 6.3 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein HALZ PF02183.18 gi|304314787|ref|YP_003849934.1| - 5.6 7.3 11.7 13 6.1 0.2 3.6 2 2 1 3 3 3 0 Homeobox associated leucine zipper bZIP_2 PF07716.15 gi|304314787|ref|YP_003849934.1| - 9.3 6.4 15.1 1.4 9.1 1.8 3.1 3 1 1 4 4 2 0 Basic region leucine zipper Ribosomal_L37e PF01907.19 gi|304314788|ref|YP_003849935.1| - 3.9e-26 91.0 9.9 4.4e-26 90.8 9.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-ribbon_3 PF13248.6 gi|304314788|ref|YP_003849935.1| - 0.024 14.0 1.1 0.041 13.3 1.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Ephrin_rec_like PF07699.13 gi|304314788|ref|YP_003849935.1| - 0.029 14.1 0.4 0.04 13.7 0.4 1.3 1 0 0 1 1 1 0 Putative ephrin-receptor like DZR PF12773.7 gi|304314788|ref|YP_003849935.1| - 0.032 14.2 1.4 0.042 13.9 1.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|304314788|ref|YP_003849935.1| - 0.034 14.2 0.5 0.038 14.0 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-piccolo PF05715.13 gi|304314788|ref|YP_003849935.1| - 0.054 13.7 1.7 0.11 12.7 1.7 1.7 1 1 0 1 1 1 0 Piccolo Zn-finger Rubredoxin_2 PF18073.1 gi|304314788|ref|YP_003849935.1| - 0.25 11.1 4.2 5.2 6.9 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribosomal_L32p PF01783.23 gi|304314788|ref|YP_003849935.1| - 0.98 9.7 9.8 1.2 9.4 8.2 1.8 1 1 1 2 2 2 0 Ribosomal L32p protein family LSM PF01423.22 gi|304314789|ref|YP_003849936.1| - 1.7e-24 85.2 0.1 2e-24 85.0 0.1 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|304314789|ref|YP_003849936.1| - 0.00064 19.8 0.0 0.0008 19.5 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain PUA PF01472.20 gi|304314790|ref|YP_003849937.1| - 7.1e-21 74.0 1.3 1.2e-20 73.3 0.6 1.7 2 0 0 2 2 2 1 PUA domain DUF1947 PF09183.10 gi|304314790|ref|YP_003849937.1| - 5.1e-12 45.9 0.5 1e-11 44.9 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|304314790|ref|YP_003849937.1| - 9.7e-05 22.6 0.0 0.00023 21.4 0.0 1.6 1 0 0 1 1 1 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|304314790|ref|YP_003849937.1| - 0.042 14.5 0.1 0.091 13.5 0.1 1.6 1 1 0 1 1 1 0 Pre-PUA-like domain PDZ PF00595.24 gi|304314790|ref|YP_003849937.1| - 0.076 13.4 0.5 9.8 6.6 0.0 2.4 2 0 0 2 2 2 0 PDZ domain FlgH PF02107.16 gi|304314790|ref|YP_003849937.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Flagellar L-ring protein Creatininase PF02633.14 gi|304314791|ref|YP_003849938.1| - 5.5e-13 48.9 0.0 7.2e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 Creatinine amidohydrolase Peripla_BP_7 PF18610.1 gi|304314791|ref|YP_003849938.1| - 0.081 13.1 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain Ribonuc_red_lgN PF00317.21 gi|304314792|ref|YP_003849939.1| - 1.8e-28 98.3 0.3 2.7e-28 97.8 0.3 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Ribonuc_red_lgC PF02867.15 gi|304314792|ref|YP_003849939.1| - 0.00074 18.2 0.0 0.0013 17.4 0.0 1.4 2 0 0 2 2 2 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgC PF02867.15 gi|304314793|ref|YP_003849940.1| - 5.1e-128 427.9 0.0 8.7e-127 423.8 0.0 2.1 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Intein_splicing PF14890.6 gi|304314793|ref|YP_003849940.1| - 1.4e-14 54.2 0.0 2.6e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Intein splicing domain PMT_2 PF13231.6 gi|304314794|ref|YP_003849941.1| - 0.00021 21.6 17.3 0.00021 21.6 17.3 3.3 3 2 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Cpta_toxin PF07254.12 gi|304314794|ref|YP_003849941.1| - 1.5 8.8 4.9 9.2 6.3 0.1 2.9 2 0 0 2 2 2 0 Membrane-bound toxin component of toxin-antitoxin system DUF4330 PF14221.6 gi|304314795|ref|YP_003849942.1| - 0.049 13.8 2.5 0.23 11.7 1.4 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4330) DUF3566 PF12089.8 gi|304314795|ref|YP_003849942.1| - 0.08 13.3 0.5 0.2 12.0 0.2 1.8 1 1 1 2 2 2 0 Transmembrane domain of unknown function (DUF3566) O_anti_polymase PF01901.16 gi|304314796|ref|YP_003849943.1| - 3e-94 316.0 32.6 3.9e-94 315.7 32.6 1.1 1 0 0 1 1 1 1 Putative O-antigen polymerase DEAD PF00270.29 gi|304314797|ref|YP_003849944.1| - 3.3e-23 82.4 0.0 5.8e-23 81.6 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|304314797|ref|YP_003849944.1| - 7.1e-14 52.1 0.0 2.3e-13 50.4 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|304314797|ref|YP_003849944.1| - 4.7e-10 39.7 0.0 7.9e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AMP-binding PF00501.28 gi|304314798|ref|YP_003849945.1| - 2.7e-118 395.2 0.0 3.2e-118 395.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|304314798|ref|YP_003849945.1| - 2.7e-19 69.9 0.1 6e-19 68.8 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 4HBT_2 PF13279.6 gi|304314799|ref|YP_003849946.1| - 1.9e-10 41.3 0.0 2.2e-10 41.1 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|304314799|ref|YP_003849946.1| - 1.4e-08 34.9 0.0 2.2e-08 34.4 0.0 1.3 1 1 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|304314799|ref|YP_003849946.1| - 6.9e-05 22.3 0.0 0.0086 15.4 0.0 2.2 1 1 1 2 2 2 2 Acyl-ACP thioesterase Cupin_2 PF07883.11 gi|304314800|ref|YP_003849947.1| - 2.1e-17 62.6 1.7 2.5e-17 62.4 0.6 1.7 2 0 0 2 2 2 1 Cupin domain HTH_3 PF01381.22 gi|304314800|ref|YP_003849947.1| - 2.2e-13 50.0 0.5 3.1e-13 49.5 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|304314800|ref|YP_003849947.1| - 9.4e-11 41.6 0.7 1.9e-10 40.6 0.7 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|304314800|ref|YP_003849947.1| - 3.7e-08 33.6 0.0 5.4e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 gi|304314800|ref|YP_003849947.1| - 5.9e-06 26.2 0.2 9.2e-06 25.6 0.2 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_26 PF13443.6 gi|304314800|ref|YP_003849947.1| - 1.3e-05 25.5 0.2 2e-05 24.9 0.2 1.2 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Cupin_3 PF05899.12 gi|304314800|ref|YP_003849947.1| - 3e-05 23.6 0.3 6e-05 22.7 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HTH_25 PF13413.6 gi|304314800|ref|YP_003849947.1| - 0.00017 21.4 0.3 0.00026 20.8 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|304314800|ref|YP_003849947.1| - 0.0028 17.2 0.2 0.0055 16.2 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|304314800|ref|YP_003849947.1| - 0.064 12.8 0.2 0.14 11.8 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MannoseP_isomer PF01050.18 gi|304314800|ref|YP_003849947.1| - 0.083 12.8 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|304314800|ref|YP_003849947.1| - 0.096 12.3 0.0 0.25 11.0 0.0 1.6 2 0 0 2 2 2 0 Cupin HTH_11 PF08279.12 gi|304314800|ref|YP_003849947.1| - 0.1 12.6 0.2 0.18 11.8 0.2 1.4 1 0 0 1 1 1 0 HTH domain Cupin_7 PF12973.7 gi|304314800|ref|YP_003849947.1| - 0.37 10.7 1.4 1.2 9.1 1.4 1.8 1 1 0 1 1 1 0 ChrR Cupin-like domain Ammonium_transp PF00909.21 gi|304314802|ref|YP_003849949.1| - 5.1e-131 437.0 34.5 5.7e-131 436.9 34.5 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|304314803|ref|YP_003849950.1| - 5.6e-38 129.6 4.5 6.3e-38 129.5 4.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|304314805|ref|YP_003849952.1| - 1.1e-135 452.4 37.5 1.2e-135 452.3 37.5 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family RTX PF02382.15 gi|304314805|ref|YP_003849952.1| - 8.5 6.0 7.5 19 4.8 7.5 1.5 1 0 0 1 1 1 0 N-terminal domain in RTX protein P-II PF00543.22 gi|304314806|ref|YP_003849953.1| - 1.2e-42 144.7 3.1 1.3e-42 144.5 3.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II PrmA PF06325.13 gi|304314806|ref|YP_003849953.1| - 0.017 14.5 0.0 0.019 14.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Nit_Regul_Hom PF10126.9 gi|304314806|ref|YP_003849953.1| - 0.066 13.2 0.2 0.35 10.9 0.2 1.9 1 1 0 1 1 1 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII DUF2007 PF09413.10 gi|304314806|ref|YP_003849953.1| - 0.089 13.0 0.0 0.24 11.6 0.0 1.7 1 1 0 1 1 1 0 Putative prokaryotic signal transducing protein HisG_C PF08029.11 gi|304314806|ref|YP_003849953.1| - 0.17 12.1 0.7 0.98 9.6 0.1 2.1 2 0 0 2 2 2 0 HisG, C-terminal domain SOR_SNZ PF01680.17 gi|304314808|ref|YP_003849955.1| - 1.4e-108 361.4 8.0 1.9e-108 361.0 8.0 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|304314808|ref|YP_003849955.1| - 2e-08 33.9 2.9 8.9e-06 25.2 0.1 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|304314808|ref|YP_003849955.1| - 0.00093 18.4 0.1 0.7 8.9 0.0 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|304314808|ref|YP_003849955.1| - 0.0012 18.3 2.1 0.015 14.7 0.1 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|304314808|ref|YP_003849955.1| - 0.0043 16.5 0.3 0.15 11.5 0.0 2.6 2 1 1 3 3 3 1 Histidine biosynthesis protein TetR_C_27 PF17935.1 gi|304314808|ref|YP_003849955.1| - 0.0059 16.7 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain NanE PF04131.14 gi|304314808|ref|YP_003849955.1| - 0.013 14.7 1.1 0.12 11.6 0.0 2.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|304314808|ref|YP_003849955.1| - 0.032 13.4 0.1 0.31 10.2 0.0 2.3 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase MttA_Hcf106 PF02416.16 gi|304314808|ref|YP_003849955.1| - 0.14 11.5 0.3 4.6 6.7 0.0 2.5 2 0 0 2 2 2 0 mttA/Hcf106 family CbtA PF09490.10 gi|304314809|ref|YP_003849956.1| - 0.084 12.6 1.3 0.095 12.5 1.3 1.0 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) PfkB PF00294.24 gi|304314810|ref|YP_003849957.1| - 1.2e-07 31.4 0.0 1.8e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase His_biosynth PF00977.21 gi|304314811|ref|YP_003849958.1| - 2.1e-34 119.0 0.0 2.4e-34 118.8 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DUF2149 PF09919.9 gi|304314812|ref|YP_003849959.1| - 5.9e-24 84.1 0.8 7.5e-24 83.8 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.16 gi|304314813|ref|YP_003849960.1| - 2.6e-10 40.1 0.3 4.4e-10 39.4 0.3 1.5 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family DUF1673 PF07895.11 gi|304314813|ref|YP_003849960.1| - 0.16 11.7 0.1 0.24 11.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF2162 PF09930.9 gi|304314814|ref|YP_003849961.1| - 2.9e-68 229.6 26.8 3.3e-68 229.5 26.8 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) DUF4134 PF13572.6 gi|304314814|ref|YP_003849961.1| - 0.023 14.9 0.7 0.023 14.9 0.7 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4134) E1-E2_ATPase PF00122.20 gi|304314814|ref|YP_003849961.1| - 0.035 13.6 0.8 0.035 13.6 0.8 2.2 1 1 0 2 2 2 0 E1-E2 ATPase DUF2976 PF11190.8 gi|304314814|ref|YP_003849961.1| - 0.14 12.0 0.2 0.14 12.0 0.2 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF2976) DUF2198 PF09964.9 gi|304314814|ref|YP_003849961.1| - 1.5 8.9 8.5 8.6 6.5 0.1 2.9 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2198) CobN-Mg_chel PF02514.16 gi|304314815|ref|YP_003849962.1| - 6.1e-101 338.9 0.6 7.7e-101 338.5 0.6 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CobN-Mg_chel PF02514.16 gi|304314816|ref|YP_003849963.1| - 1.4e-161 539.6 0.0 7.9e-93 312.0 0.0 2.0 2 0 0 2 2 2 2 CobN/Magnesium Chelatase Glyco_trans_4_5 PF16994.5 gi|304314816|ref|YP_003849963.1| - 0.13 11.9 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl-transferase family 4 DUF3479 PF11965.8 gi|304314817|ref|YP_003849964.1| - 0.00054 20.1 0.0 0.0011 19.1 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF3479) CheZ PF04344.13 gi|304314817|ref|YP_003849964.1| - 0.035 14.0 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 Chemotaxis phosphatase, CheZ FmdE PF02663.14 gi|304314818|ref|YP_003849965.1| - 2.4e-36 124.7 0.0 8.3e-20 71.2 0.0 3.1 3 0 0 3 3 3 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DUF5643 PF18705.1 gi|304314818|ref|YP_003849965.1| - 0.068 13.2 0.9 0.56 10.2 0.1 2.6 2 1 1 3 3 3 0 Family of unknown function (DUF5643) DUF1533 PF07550.11 gi|304314818|ref|YP_003849965.1| - 0.093 12.6 0.0 0.31 11.0 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1533) NAS PF03059.16 gi|304314820|ref|YP_003849967.1| - 1.2e-10 41.2 0.0 1.4e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein FluMu_N PF17891.1 gi|304314820|ref|YP_003849967.1| - 0.0061 16.3 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Mu-like prophage FluMu N-terminal domain Methyltransf_31 PF13847.6 gi|304314820|ref|YP_003849967.1| - 0.027 14.3 0.0 0.03 14.1 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain NAS PF03059.16 gi|304314821|ref|YP_003849968.1| - 8e-10 38.5 0.0 1e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Nicotianamine synthase protein Acetyltransf_1 PF00583.25 gi|304314822|ref|YP_003849969.1| - 3.4e-14 53.1 0.3 4.5e-14 52.7 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|304314822|ref|YP_003849969.1| - 8.7e-08 32.2 0.0 1.3e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|304314822|ref|YP_003849969.1| - 5.2e-07 30.0 0.1 8.4e-07 29.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|304314822|ref|YP_003849969.1| - 6e-07 29.7 0.0 9.6e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|304314822|ref|YP_003849969.1| - 0.00083 19.4 0.0 0.001 19.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|304314822|ref|YP_003849969.1| - 0.018 15.2 0.0 0.039 14.1 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.6 gi|304314822|ref|YP_003849969.1| - 0.1 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase DUF3194 PF11419.8 gi|304314823|ref|YP_003849970.1| - 2.2e-27 95.2 4.5 2.5e-27 95.1 4.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) NTP_transf_7 PF07984.12 gi|304314823|ref|YP_003849970.1| - 0.069 12.4 0.2 0.071 12.3 0.2 1.0 1 0 0 1 1 1 0 Nucleotidyltransferase Prefoldin_2 PF01920.20 gi|304314824|ref|YP_003849971.1| - 6.3e-26 90.4 23.1 7e-26 90.3 23.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit IFT57 PF10498.9 gi|304314824|ref|YP_003849971.1| - 0.0064 15.5 16.6 0.054 12.4 4.0 2.0 2 0 0 2 2 2 2 Intra-flagellar transport protein 57 DUF4795 PF16043.5 gi|304314824|ref|YP_003849971.1| - 0.0081 15.8 14.7 0.011 15.4 14.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) GvpG PF05120.12 gi|304314824|ref|YP_003849971.1| - 0.027 14.5 2.9 0.027 14.5 2.9 2.4 2 1 0 2 2 2 0 Gas vesicle protein G DUF790 PF05626.11 gi|304314824|ref|YP_003849971.1| - 0.045 12.5 3.7 0.054 12.2 3.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF790) ASD2 PF08687.11 gi|304314824|ref|YP_003849971.1| - 0.092 12.3 12.8 0.11 12.0 12.8 1.1 1 0 0 1 1 1 0 Apx/Shroom domain ASD2 IclR PF01614.18 gi|304314824|ref|YP_003849971.1| - 0.14 12.0 4.0 2.3 8.0 0.4 2.1 2 0 0 2 2 2 0 Bacterial transcriptional regulator DHR10 PF18595.1 gi|304314824|ref|YP_003849971.1| - 0.15 12.1 20.7 0.3 11.1 6.2 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain DUF2089 PF09862.9 gi|304314824|ref|YP_003849971.1| - 0.35 10.9 10.3 2.4 8.2 2.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) FmiP_Thoc5 PF09766.9 gi|304314824|ref|YP_003849971.1| - 0.38 10.0 11.2 0.17 11.1 1.7 2.0 2 0 0 2 2 2 0 Fms-interacting protein/Thoc5 Laminin_II PF06009.12 gi|304314824|ref|YP_003849971.1| - 0.41 10.7 16.1 8 6.5 16.1 2.0 1 1 0 1 1 1 0 Laminin Domain II YPEB PF14620.6 gi|304314824|ref|YP_003849971.1| - 0.57 9.5 11.5 0.84 8.9 11.5 1.1 1 0 0 1 1 1 0 YpeB sporulation Cas_Cas1 PF01867.16 gi|304314824|ref|YP_003849971.1| - 0.65 9.1 7.9 1.2 8.2 7.9 1.5 1 1 0 1 1 1 0 CRISPR associated protein Cas1 Nup54 PF13874.6 gi|304314824|ref|YP_003849971.1| - 0.74 9.9 12.6 0.52 10.4 2.0 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 POTRA_TamA_1 PF17243.2 gi|304314824|ref|YP_003849971.1| - 0.76 9.9 8.7 2 8.6 0.9 2.2 2 0 0 2 2 2 0 POTRA domain TamA domain 1 CK2S PF15011.6 gi|304314824|ref|YP_003849971.1| - 0.78 9.6 11.6 28 4.6 11.6 2.1 1 1 0 1 1 1 0 Casein Kinase 2 substrate FlaC_arch PF05377.11 gi|304314824|ref|YP_003849971.1| - 0.78 10.2 16.6 2.1 8.8 7.9 2.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF3450 PF11932.8 gi|304314824|ref|YP_003849971.1| - 0.78 9.0 23.5 0.051 12.9 8.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF87 PF01935.17 gi|304314824|ref|YP_003849971.1| - 1.6 8.8 6.3 1.8 8.6 6.3 1.1 1 0 0 1 1 1 0 Helicase HerA, central domain ECM11 PF15463.6 gi|304314824|ref|YP_003849971.1| - 3 8.4 11.6 3 8.4 3.5 2.1 2 0 0 2 2 2 0 Extracellular mutant protein 11 Occludin_ELL PF07303.13 gi|304314824|ref|YP_003849971.1| - 5.1 7.9 12.9 6.9 7.5 2.7 2.1 1 1 1 2 2 2 0 Occludin homology domain Spore_III_AB PF09548.10 gi|304314824|ref|YP_003849971.1| - 6 7.0 10.8 9.8 6.3 10.8 1.4 1 1 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) eIF3_N PF09440.10 gi|304314824|ref|YP_003849971.1| - 8.5 6.8 15.8 8.5 6.8 7.3 2.1 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain Spc7 PF08317.11 gi|304314824|ref|YP_003849971.1| - 9.6 5.0 21.1 1.1 8.0 5.4 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein Pcc1 PF09341.10 gi|304314825|ref|YP_003849972.1| - 2.5e-13 49.9 0.1 3.3e-13 49.6 0.1 1.3 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF5305 PF17231.2 gi|304314825|ref|YP_003849972.1| - 0.0064 15.9 0.0 0.0081 15.6 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5305) DNA_RNApol_7kD PF03604.13 gi|304314827|ref|YP_003849974.1| - 0.0018 17.9 6.2 0.0039 16.8 6.2 1.5 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|304314827|ref|YP_003849974.1| - 0.0021 17.6 0.9 0.46 10.1 0.1 2.1 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger Spt4 PF06093.13 gi|304314827|ref|YP_003849974.1| - 0.005 16.9 0.3 0.005 16.9 0.3 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|304314827|ref|YP_003849974.1| - 0.0064 16.5 1.7 0.01 15.8 1.7 1.3 1 1 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|304314827|ref|YP_003849974.1| - 0.0072 16.4 1.5 0.012 15.7 1.5 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|304314827|ref|YP_003849974.1| - 0.0081 16.1 0.1 0.0092 16.0 0.1 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.6 gi|304314827|ref|YP_003849974.1| - 0.013 14.9 1.5 0.98 8.9 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain RNHCP PF12647.7 gi|304314827|ref|YP_003849974.1| - 0.013 15.4 0.1 0.014 15.4 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain HypA PF01155.19 gi|304314827|ref|YP_003849974.1| - 0.013 15.5 0.5 0.014 15.5 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|304314827|ref|YP_003849974.1| - 0.036 13.9 0.9 0.059 13.3 0.9 1.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_10 PF10058.9 gi|304314827|ref|YP_003849974.1| - 0.11 12.3 1.5 2.2 8.1 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_4 PF13717.6 gi|304314827|ref|YP_003849974.1| - 0.11 12.4 3.4 8.2 6.4 0.0 2.3 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|304314827|ref|YP_003849974.1| - 0.12 12.1 3.6 1.9 8.3 3.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|304314827|ref|YP_003849974.1| - 0.22 11.1 2.7 0.68 9.5 0.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Med27 PF11571.8 gi|304314827|ref|YP_003849974.1| - 0.24 11.8 3.0 3.2 8.2 3.0 2.0 1 1 0 1 1 1 0 Mediator complex subunit 27 Rubredoxin_2 PF18073.1 gi|304314827|ref|YP_003849974.1| - 0.85 9.4 6.4 0.85 9.4 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-HIT PF04438.16 gi|304314827|ref|YP_003849974.1| - 1.7 8.5 9.3 12 5.9 9.3 2.0 1 1 0 1 1 1 0 HIT zinc finger Mu-like_Com PF10122.9 gi|304314827|ref|YP_003849974.1| - 3 7.4 6.5 32 4.1 6.4 2.0 1 1 0 1 1 1 0 Mu-like prophage protein Com Ribosomal_L37ae PF01780.19 gi|304314828|ref|YP_003849975.1| - 2.6e-34 117.2 5.0 2.8e-34 117.0 5.0 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|304314828|ref|YP_003849975.1| - 0.004 17.1 2.6 0.0058 16.6 2.6 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|304314828|ref|YP_003849975.1| - 0.0081 16.3 0.6 4.7 7.4 0.0 2.2 2 0 0 2 2 2 2 Zinc ribbon domain Rad50_zn_hook PF04423.14 gi|304314828|ref|YP_003849975.1| - 0.011 15.6 0.6 0.011 15.6 0.6 1.5 2 0 0 2 2 2 0 Rad50 zinc hook motif Rep_fac-A_C PF08646.10 gi|304314828|ref|YP_003849975.1| - 0.018 14.8 0.7 0.022 14.5 0.7 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Elf1 PF05129.13 gi|304314828|ref|YP_003849975.1| - 0.025 14.6 4.4 0.049 13.7 4.4 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like IBR PF01485.21 gi|304314828|ref|YP_003849975.1| - 0.036 14.3 0.7 0.047 13.9 0.7 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain A2L_zn_ribbon PF08792.10 gi|304314828|ref|YP_003849975.1| - 0.1 12.4 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|304314828|ref|YP_003849975.1| - 0.1 12.6 4.6 0.077 12.9 3.0 1.7 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-BED PF02892.15 gi|304314828|ref|YP_003849975.1| - 0.12 12.5 1.5 0.22 11.6 1.5 1.7 1 1 0 1 1 1 0 BED zinc finger zf-C2H2 PF00096.26 gi|304314828|ref|YP_003849975.1| - 0.14 12.7 2.1 14 6.4 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|304314828|ref|YP_003849975.1| - 0.14 12.6 1.9 16 6.1 0.4 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-TFIIB PF13453.6 gi|304314828|ref|YP_003849975.1| - 0.15 11.4 1.8 0.23 10.8 1.8 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-tcix PF14952.6 gi|304314828|ref|YP_003849975.1| - 0.18 11.5 0.5 0.18 11.5 0.5 2.6 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-ACC PF17848.1 gi|304314828|ref|YP_003849975.1| - 0.27 11.3 3.6 10 6.3 0.5 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Mut7-C PF01927.16 gi|304314828|ref|YP_003849975.1| - 1 9.4 4.6 6.9 6.8 4.6 1.9 1 1 0 1 1 1 0 Mut7-C RNAse domain DUF35_N PF12172.8 gi|304314828|ref|YP_003849975.1| - 1.3 8.9 5.9 7.6 6.5 0.6 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNase_PH PF01138.21 gi|304314829|ref|YP_003849976.1| - 1.5e-32 112.8 0.0 2.1e-32 112.4 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|304314829|ref|YP_003849976.1| - 2.1e-13 50.1 0.1 4e-13 49.2 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|304314830|ref|YP_003849977.1| - 5.6e-37 127.2 0.0 1.1e-36 126.2 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|304314830|ref|YP_003849977.1| - 1.7e-16 60.0 0.1 4.3e-16 58.7 0.2 1.6 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|304314831|ref|YP_003849978.1| - 1e-08 35.4 0.1 1.7e-08 34.6 0.1 1.4 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|304314831|ref|YP_003849978.1| - 2e-08 33.9 0.0 3.4e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_1 PF00013.29 gi|304314831|ref|YP_003849978.1| - 8.3e-07 28.7 0.4 2e-06 27.5 0.4 1.6 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|304314831|ref|YP_003849978.1| - 0.00096 18.9 0.8 0.0023 17.7 0.8 1.8 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|304314831|ref|YP_003849978.1| - 0.0019 18.5 0.2 0.0046 17.3 0.2 1.7 1 0 0 1 1 1 1 S1 RNA binding domain KH_4 PF13083.6 gi|304314831|ref|YP_003849978.1| - 0.13 12.2 0.2 0.3 11.0 0.2 1.7 1 0 0 1 1 1 0 KH domain GshA PF08886.11 gi|304314831|ref|YP_003849978.1| - 0.14 10.7 0.1 0.2 10.2 0.1 1.1 1 0 0 1 1 1 0 Glutamate-cysteine ligase SBDS PF01172.18 gi|304314832|ref|YP_003849979.1| - 2.3e-23 82.1 0.0 3.9e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|304314832|ref|YP_003849979.1| - 2.3e-20 72.7 0.1 4.4e-20 71.8 0.1 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.26 gi|304314833|ref|YP_003849980.1| - 6.4e-64 215.0 0.2 8e-64 214.6 0.2 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|304314833|ref|YP_003849980.1| - 1.2e-14 53.6 0.5 4.1e-14 51.9 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature DUF982 PF06169.12 gi|304314833|ref|YP_003849980.1| - 0.24 11.5 0.0 0.24 11.5 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF982) RNase_P_Rpp14 PF01900.19 gi|304314834|ref|YP_003849981.1| - 4.6e-18 65.4 0.0 5.4e-18 65.1 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.16 gi|304314835|ref|YP_003849982.1| - 1.2e-45 155.6 0.0 1.5e-45 155.3 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 RNA_binding PF01877.17 gi|304314836|ref|YP_003849983.1| - 6.2e-33 113.6 0.0 7.3e-33 113.4 0.0 1.1 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.17 gi|304314837|ref|YP_003849984.1| - 2.6e-86 288.2 11.1 2.9e-86 288.1 11.1 1.0 1 0 0 1 1 1 1 Ribosomal L15 NosD PF05048.13 gi|304314838|ref|YP_003849985.1| - 2.6e-61 207.0 61.1 1.4e-43 148.9 23.8 3.3 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|304314838|ref|YP_003849985.1| - 7.6e-35 120.1 82.2 3.9e-18 65.8 24.6 4.8 3 1 2 5 5 5 3 Right handed beta helix region Big_5 PF13205.6 gi|304314838|ref|YP_003849985.1| - 1.9e-26 92.8 10.4 1.5e-13 51.4 1.3 3.5 2 1 1 3 3 3 2 Bacterial Ig-like domain Pectate_lyase_3 PF12708.7 gi|304314838|ref|YP_003849985.1| - 0.0009 19.1 29.0 0.17 11.7 8.7 4.2 1 1 1 3 3 3 3 Pectate lyase superfamily protein CopC PF04234.12 gi|304314838|ref|YP_003849985.1| - 0.092 13.8 0.0 12 7.1 0.0 2.5 2 0 0 2 2 2 0 CopC domain Peptidase_C25_C PF03785.14 gi|304314838|ref|YP_003849985.1| - 1.2 9.0 6.3 4.8 7.1 0.1 3.7 3 0 0 3 3 3 0 Peptidase family C25, C terminal ig-like domain CMD PF02627.20 gi|304314839|ref|YP_003849986.1| - 3e-13 49.6 0.0 3.5e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF1454 PF07305.12 gi|304314839|ref|YP_003849986.1| - 0.0059 16.1 0.1 0.0081 15.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1454) Band_7 PF01145.25 gi|304314840|ref|YP_003849987.1| - 3.4e-34 118.4 8.9 6.1e-34 117.6 8.9 1.5 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_C PF16200.5 gi|304314840|ref|YP_003849987.1| - 0.043 13.9 0.4 0.14 12.2 0.0 2.1 2 0 0 2 2 2 0 C-terminal region of band_7 NfeD PF01957.18 gi|304314841|ref|YP_003849988.1| - 6.1e-25 87.4 2.7 6.1e-25 87.4 2.7 1.6 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CBP_BcsG PF11658.8 gi|304314841|ref|YP_003849988.1| - 0.14 10.5 0.0 0.15 10.4 0.0 1.0 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsG CoA_binding_3 PF13727.6 gi|304314841|ref|YP_003849988.1| - 1.3 9.1 4.6 2.3 8.2 4.6 1.6 1 1 0 1 1 1 0 CoA-binding domain Phage_holin_3_6 PF07332.11 gi|304314841|ref|YP_003849988.1| - 1.3 9.1 10.2 2.4 8.3 10.2 1.5 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III HTH_3 PF01381.22 gi|304314842|ref|YP_003849989.1| - 9e-05 22.5 0.0 0.00027 21.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|304314842|ref|YP_003849989.1| - 0.021 15.1 0.8 0.026 14.9 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_19 PF12844.7 gi|304314842|ref|YP_003849989.1| - 0.027 14.5 0.2 0.1 12.7 0.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain MacB_PCD PF12704.7 gi|304314843|ref|YP_003849990.1| - 5.8e-23 82.3 1.8 5.8e-23 82.3 1.8 2.1 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|304314843|ref|YP_003849990.1| - 1.4e-14 54.3 1.9 1.4e-14 54.3 1.9 3.0 3 0 0 3 3 3 1 FtsX-like permease family ABC_tran PF00005.27 gi|304314844|ref|YP_003849991.1| - 5.7e-36 124.0 0.0 8e-36 123.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|304314844|ref|YP_003849991.1| - 6.2e-10 39.4 0.1 4.4e-05 23.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|304314844|ref|YP_003849991.1| - 1.4e-09 37.7 0.4 1.2e-05 24.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|304314844|ref|YP_003849991.1| - 1.4e-05 25.4 0.1 0.00035 20.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|304314844|ref|YP_003849991.1| - 2.1e-05 24.1 0.1 3.8e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|304314844|ref|YP_003849991.1| - 0.00054 19.8 0.0 0.011 15.5 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|304314844|ref|YP_003849991.1| - 0.00068 20.1 0.1 0.0012 19.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|304314844|ref|YP_003849991.1| - 0.0013 18.3 0.0 0.27 10.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|304314844|ref|YP_003849991.1| - 0.0014 18.6 0.0 0.0026 17.7 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase TPM_phosphatase PF04536.14 gi|304314844|ref|YP_003849991.1| - 0.005 17.0 0.0 0.45 10.7 0.0 2.2 2 0 0 2 2 2 1 TPM domain NTPase_1 PF03266.15 gi|304314844|ref|YP_003849991.1| - 0.012 15.5 0.3 2.1 8.2 0.0 2.3 1 1 1 2 2 2 0 NTPase AAA PF00004.29 gi|304314844|ref|YP_003849991.1| - 0.015 15.7 0.4 0.19 12.2 0.4 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|304314844|ref|YP_003849991.1| - 0.019 15.5 0.1 0.035 14.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|304314844|ref|YP_003849991.1| - 0.036 14.1 0.8 0.16 12.1 0.8 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|304314844|ref|YP_003849991.1| - 0.045 13.8 0.3 0.87 9.6 0.1 2.1 2 0 0 2 2 2 0 Dynamin family IstB_IS21 PF01695.17 gi|304314844|ref|YP_003849991.1| - 0.053 13.3 0.0 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|304314844|ref|YP_003849991.1| - 0.057 13.3 0.0 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|304314844|ref|YP_003849991.1| - 0.059 13.6 0.0 0.16 12.2 0.0 1.7 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|304314844|ref|YP_003849991.1| - 0.075 13.3 0.0 1.2 9.5 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.19 gi|304314844|ref|YP_003849991.1| - 0.081 12.5 0.1 0.11 12.1 0.1 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 gi|304314844|ref|YP_003849991.1| - 0.083 12.1 0.2 0.22 10.7 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_18 PF13238.6 gi|304314844|ref|YP_003849991.1| - 0.094 13.3 0.1 0.28 11.7 0.1 1.9 2 1 0 2 2 2 0 AAA domain BLACT_WH PF17778.1 gi|304314844|ref|YP_003849991.1| - 0.17 11.9 0.3 0.51 10.4 0.1 1.8 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain AAA_24 PF13479.6 gi|304314844|ref|YP_003849991.1| - 0.18 11.5 0.2 0.44 10.3 0.1 1.7 2 0 0 2 2 2 0 AAA domain Flavoprotein PF02441.19 gi|304314845|ref|YP_003849992.1| - 1.6e-15 57.2 0.0 1.9e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Adenosine_kin PF04008.14 gi|304314847|ref|YP_003849994.1| - 3.9e-77 257.3 0.2 4.4e-77 257.2 0.2 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Tricorn_C1 PF14684.6 gi|304314847|ref|YP_003849994.1| - 0.081 13.0 0.1 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 Tricorn protease C1 domain Cupin_2 PF07883.11 gi|304314848|ref|YP_003849995.1| - 3.5e-16 58.7 0.0 1e-15 57.2 0.0 1.8 2 0 0 2 2 2 1 Cupin domain HTH_19 PF12844.7 gi|304314848|ref|YP_003849995.1| - 3e-08 33.5 0.1 5e-08 32.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|304314848|ref|YP_003849995.1| - 3.4e-08 33.4 0.0 5.2e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|304314848|ref|YP_003849995.1| - 6.9e-07 29.5 0.0 1.1e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Cupin_3 PF05899.12 gi|304314848|ref|YP_003849995.1| - 0.00066 19.3 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|304314848|ref|YP_003849995.1| - 0.0015 18.4 0.0 0.0023 17.8 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.8 gi|304314848|ref|YP_003849995.1| - 0.017 15.3 0.0 0.033 14.4 0.0 1.5 1 1 0 1 1 1 0 Mif2/CENP-C like Asp_Arg_Hydrox PF05118.15 gi|304314848|ref|YP_003849995.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase AMP-binding PF00501.28 gi|304314849|ref|YP_003849996.1| - 2e-84 283.7 0.0 2.4e-84 283.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|304314849|ref|YP_003849996.1| - 1.3e-24 87.0 0.7 2.9e-24 85.8 0.7 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.7 gi|304314850|ref|YP_003849997.1| - 1.3e-09 38.5 10.0 1.3e-09 38.5 10.0 1.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314850|ref|YP_003849997.1| - 2e-08 34.2 7.4 3.4e-08 33.5 7.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304314850|ref|YP_003849997.1| - 3e-07 30.5 23.5 2.4e-06 27.5 11.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304314850|ref|YP_003849997.1| - 1.6e-06 28.0 16.1 0.00092 19.2 2.5 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|304314850|ref|YP_003849997.1| - 9.4e-06 25.7 23.6 5.8e-05 23.2 12.3 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|304314850|ref|YP_003849997.1| - 1.4e-05 24.7 19.4 0.0015 18.3 4.0 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304314850|ref|YP_003849997.1| - 3.4e-05 23.7 15.5 0.0014 18.6 1.7 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304314850|ref|YP_003849997.1| - 8.8e-05 23.4 13.2 0.0071 17.3 2.2 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|304314850|ref|YP_003849997.1| - 0.00049 20.9 7.7 0.06 14.2 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304314850|ref|YP_003849997.1| - 0.00083 19.8 11.2 0.013 16.0 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304314850|ref|YP_003849997.1| - 0.00084 19.7 18.1 0.029 14.9 5.7 2.7 1 1 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|304314850|ref|YP_003849997.1| - 0.004 17.7 13.6 0.095 13.3 2.7 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|304314850|ref|YP_003849997.1| - 0.012 16.1 13.9 0.32 11.6 13.9 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304314850|ref|YP_003849997.1| - 0.015 16.2 14.9 0.13 13.3 3.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|304314850|ref|YP_003849997.1| - 0.45 11.3 10.4 0.91 10.3 1.8 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain POR_N PF01855.19 gi|304314851|ref|YP_003849998.1| - 1e-51 175.9 0.1 1.3e-51 175.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|304314851|ref|YP_003849998.1| - 2.4e-27 95.2 0.0 4.8e-27 94.3 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|304314851|ref|YP_003849998.1| - 5.7e-06 26.2 0.0 1.1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|304314851|ref|YP_003849998.1| - 0.012 15.3 0.2 0.021 14.4 0.2 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR PF01558.18 gi|304314853|ref|YP_003850000.1| - 1.8e-43 148.6 0.1 2.7e-43 148.1 0.1 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|304314853|ref|YP_003850000.1| - 2.2e-15 56.8 0.0 4.3e-15 55.8 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Asparaginase PF00710.20 gi|304314854|ref|YP_003850001.1| - 2.8e-60 203.2 0.2 4.2e-60 202.6 0.2 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|304314854|ref|YP_003850001.1| - 4.6e-34 117.0 0.0 4.1e-33 114.0 0.0 2.1 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|304314854|ref|YP_003850001.1| - 1.6e-21 75.4 0.5 1.6e-21 75.4 0.5 1.8 2 0 0 2 2 2 1 GatD N-terminal domain Cyclase PF04199.13 gi|304314854|ref|YP_003850001.1| - 0.075 13.3 0.1 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 Putative cyclase GatB_N PF02934.15 gi|304314855|ref|YP_003850002.1| - 5.6e-68 229.3 0.0 7.2e-68 228.9 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|304314855|ref|YP_003850002.1| - 2.9e-23 82.4 0.1 7.6e-23 81.0 0.1 1.8 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|304314855|ref|YP_003850002.1| - 3.9e-18 65.5 0.0 3.8e-17 62.3 0.0 2.5 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|304314855|ref|YP_003850002.1| - 3.6e-06 27.1 0.2 9.3e-06 25.8 0.2 1.7 1 0 0 1 1 1 1 Yqey-like protein DUF1428 PF07237.11 gi|304314855|ref|YP_003850002.1| - 0.047 14.0 0.2 0.73 10.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1428) PolyA_pol_RNAbd PF12627.7 gi|304314855|ref|YP_003850002.1| - 0.057 13.2 0.4 0.23 11.3 0.4 2.1 1 0 0 1 1 1 0 Probable RNA and SrmB- binding site of polymerase A CagS PF16707.5 gi|304314855|ref|YP_003850002.1| - 0.17 11.9 0.1 0.43 10.6 0.0 1.6 1 1 0 1 1 1 0 Cag pathogenicity island protein S of Helicobacter pylori Pyr_redox_2 PF07992.14 gi|304314856|ref|YP_003850003.1| - 6.8e-51 173.2 1.3 7.7e-51 173.1 1.3 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|304314856|ref|YP_003850003.1| - 8.4e-26 90.9 1.2 1.7e-20 73.5 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|304314856|ref|YP_003850003.1| - 3.9e-18 65.8 0.3 3.9e-18 65.8 0.3 3.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|304314856|ref|YP_003850003.1| - 9.7e-08 31.1 6.7 3.2e-05 22.8 0.6 2.9 4 0 0 4 4 4 2 HI0933-like protein GIDA PF01134.22 gi|304314856|ref|YP_003850003.1| - 2.4e-07 30.2 5.1 0.0083 15.3 0.9 3.8 3 1 1 4 4 4 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|304314856|ref|YP_003850003.1| - 2.3e-06 27.3 2.5 3.6e-05 23.3 0.2 2.5 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|304314856|ref|YP_003850003.1| - 8.3e-06 25.3 3.6 0.002 17.4 0.9 2.5 2 1 0 2 2 2 2 FAD binding domain K_oxygenase PF13434.6 gi|304314856|ref|YP_003850003.1| - 1.8e-05 24.1 0.3 0.078 12.1 0.0 3.1 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|304314856|ref|YP_003850003.1| - 1.9e-05 24.0 7.9 9.1e-05 21.7 1.5 3.3 3 1 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|304314856|ref|YP_003850003.1| - 3.1e-05 24.1 0.3 0.0011 19.2 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|304314856|ref|YP_003850003.1| - 0.00022 20.9 6.5 0.08 12.5 2.8 2.8 2 1 0 3 3 3 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|304314856|ref|YP_003850003.1| - 0.0016 17.7 1.6 0.0016 17.7 1.6 1.9 2 1 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 gi|304314856|ref|YP_003850003.1| - 0.0021 18.5 0.7 0.0071 16.8 0.1 2.2 3 0 0 3 3 3 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|304314856|ref|YP_003850003.1| - 0.027 13.8 1.2 4.5 6.5 0.4 2.5 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|304314856|ref|YP_003850003.1| - 0.14 12.2 3.3 1.3 9.1 0.1 3.2 3 1 1 4 4 4 0 Shikimate / quinate 5-dehydrogenase Staph_opine_DH PF10100.9 gi|304314856|ref|YP_003850003.1| - 0.16 10.6 0.0 0.23 10.1 0.0 1.2 1 0 0 1 1 1 0 Staphylopine dehydrogenase Lycopene_cycl PF05834.12 gi|304314856|ref|YP_003850003.1| - 0.24 10.4 0.8 0.49 9.4 0.8 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein Mrr_cat PF04471.12 gi|304314857|ref|YP_003850004.1| - 1.3e-34 118.7 0.0 1.9e-34 118.1 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_N PF14338.6 gi|304314857|ref|YP_003850004.1| - 2.4e-27 94.9 0.2 9.3e-27 93.0 0.0 1.9 2 0 0 2 2 2 1 Mrr N-terminal domain Mrr_cat_2 PF13156.6 gi|304314857|ref|YP_003850004.1| - 1.2e-09 38.1 0.0 1.9e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease TMEM208_SND2 PF05620.11 gi|304314858|ref|YP_003850005.1| - 0.17 11.6 8.7 0.18 11.5 8.7 1.0 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 CcmH PF03918.14 gi|304314858|ref|YP_003850005.1| - 1.1 8.6 4.2 1.2 8.4 4.0 1.3 1 1 0 1 1 1 0 Cytochrome C biogenesis protein DUF2207 PF09972.9 gi|304314858|ref|YP_003850005.1| - 3.9 6.1 8.7 3.7 6.2 8.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Ac81 PF05820.11 gi|304314858|ref|YP_003850005.1| - 9 5.8 7.8 9.4 5.8 7.8 1.0 1 0 0 1 1 1 0 Baculoviridae AC81 GATase PF00117.28 gi|304314859|ref|YP_003850006.1| - 5.9e-42 143.6 0.1 7e-42 143.4 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|304314859|ref|YP_003850006.1| - 1.8e-15 57.3 1.2 7.2e-15 55.3 0.4 2.2 1 1 1 2 2 2 1 Peptidase C26 GMP_synt_C PF00958.22 gi|304314860|ref|YP_003850007.1| - 1.2e-31 108.6 0.0 2.7e-31 107.5 0.0 1.7 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|304314860|ref|YP_003850007.1| - 2.8e-10 39.7 0.1 8.3e-06 25.1 0.0 2.3 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|304314860|ref|YP_003850007.1| - 3e-05 23.6 0.0 0.0056 16.2 0.0 2.3 1 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|304314860|ref|YP_003850007.1| - 0.00072 18.4 0.1 0.01 14.7 0.1 2.1 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|304314860|ref|YP_003850007.1| - 0.00083 19.1 0.0 0.0013 18.5 0.0 1.3 1 0 0 1 1 1 1 PP-loop family ThiI PF02568.14 gi|304314860|ref|YP_003850007.1| - 0.007 16.0 0.1 0.021 14.4 0.1 1.7 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|304314860|ref|YP_003850007.1| - 0.0096 16.0 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.19 gi|304314860|ref|YP_003850007.1| - 0.024 13.9 0.0 0.042 13.1 0.0 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase Asn_synthase PF00733.21 gi|304314860|ref|YP_003850007.1| - 0.034 13.8 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase zf-PARP PF00645.18 gi|304314861|ref|YP_003850008.1| - 0.18 12.7 0.0 0.19 12.6 0.0 1.1 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region SelR PF01641.18 gi|304314862|ref|YP_003850009.1| - 4.1e-53 178.6 0.0 4.7e-53 178.4 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 gi|304314862|ref|YP_003850009.1| - 0.0062 16.7 0.2 0.0092 16.2 0.2 1.3 1 0 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly CbtA PF09490.10 gi|304314863|ref|YP_003850010.1| - 0.017 14.9 0.9 0.021 14.6 0.9 1.0 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) Dynactin_p62 PF05502.13 gi|304314866|ref|YP_003850013.1| - 0.0052 15.6 0.3 0.0055 15.5 0.3 1.0 1 0 0 1 1 1 1 Dynactin p62 family DUF2723 PF11028.8 gi|304314870|ref|YP_003850017.1| - 0.0029 17.5 1.1 0.0042 17.0 1.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2723) TPR_1 PF00515.28 gi|304314872|ref|YP_003850019.1| - 9.1e-126 405.1 59.1 2.7e-14 52.3 0.1 11.2 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_2 PF07719.17 gi|304314872|ref|YP_003850019.1| - 4.8e-107 341.7 49.6 2.2e-11 43.0 0.2 11.6 11 1 1 12 12 12 11 Tetratricopeptide repeat TPR_8 PF13181.6 gi|304314872|ref|YP_003850019.1| - 9e-93 296.9 48.1 1.1e-10 40.8 0.6 11.6 11 1 1 12 12 12 11 Tetratricopeptide repeat TPR_11 PF13414.6 gi|304314872|ref|YP_003850019.1| - 1.8e-91 299.6 41.2 9.1e-12 44.5 0.8 11.1 1 1 10 11 11 11 11 TPR repeat TPR_17 PF13431.6 gi|304314872|ref|YP_003850019.1| - 1.4e-75 244.3 43.8 1.4e-08 34.5 0.1 11.7 12 0 0 12 12 11 10 Tetratricopeptide repeat TPR_12 PF13424.6 gi|304314872|ref|YP_003850019.1| - 4.1e-67 222.5 28.2 2.4e-15 56.6 0.2 9.2 1 1 8 9 9 9 9 Tetratricopeptide repeat TPR_16 PF13432.6 gi|304314872|ref|YP_003850019.1| - 4.7e-65 216.0 0.0 7e-11 42.6 0.0 7.9 2 2 6 9 9 9 9 Tetratricopeptide repeat TPR_14 PF13428.6 gi|304314872|ref|YP_003850019.1| - 1.5e-63 206.0 4.1 2.7e-05 24.6 0.1 11.1 1 1 10 11 11 11 11 Tetratricopeptide repeat TPR_7 PF13176.6 gi|304314872|ref|YP_003850019.1| - 1.9e-52 171.5 8.4 6e-07 29.1 0.0 11.1 11 0 0 11 11 11 8 Tetratricopeptide repeat TPR_9 PF13371.6 gi|304314872|ref|YP_003850019.1| - 1.7e-49 165.8 0.3 2.9e-08 33.7 0.1 7.3 3 1 5 8 8 8 7 Tetratricopeptide repeat TPR_19 PF14559.6 gi|304314872|ref|YP_003850019.1| - 4.3e-49 164.9 15.0 1.5e-10 41.4 0.1 6.5 4 2 2 7 7 7 7 Tetratricopeptide repeat TPR_10 PF13374.6 gi|304314872|ref|YP_003850019.1| - 9.9e-40 133.4 17.4 6.5e-05 22.7 0.2 11.1 11 0 0 11 11 11 7 Tetratricopeptide repeat TPR_6 PF13174.6 gi|304314872|ref|YP_003850019.1| - 3.9e-33 111.9 15.3 0.083 13.6 0.0 11.6 11 1 1 12 12 11 9 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|304314872|ref|YP_003850019.1| - 6.8e-31 106.3 55.4 1.2e-07 31.8 2.5 5.2 1 1 6 7 7 7 6 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|304314872|ref|YP_003850019.1| - 6.6e-22 78.1 10.9 5.4e-05 22.3 0.0 6.7 1 1 8 9 9 9 7 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|304314872|ref|YP_003850019.1| - 1.9e-19 69.5 42.9 0.13 12.4 0.7 11.1 7 3 4 11 11 11 8 Fis1 C-terminal tetratricopeptide repeat TPR_15 PF13429.6 gi|304314872|ref|YP_003850019.1| - 2.6e-19 69.5 8.7 2.4e-05 23.7 0.2 6.4 1 1 3 5 5 5 5 Tetratricopeptide repeat MIT PF04212.18 gi|304314872|ref|YP_003850019.1| - 1.3e-18 66.8 30.8 0.06 13.4 0.1 10.9 9 2 1 11 11 11 4 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|304314872|ref|YP_003850019.1| - 2.1e-17 63.5 7.6 0.013 15.6 0.0 8.1 1 1 6 7 7 7 5 Domain of Unknown Function (DUF3856) FAT PF02259.23 gi|304314872|ref|YP_003850019.1| - 1.1e-13 51.2 22.3 2.2e-05 23.8 0.4 7.5 1 1 5 6 6 6 5 FAT domain BTAD PF03704.17 gi|304314872|ref|YP_003850019.1| - 1.8e-12 47.9 4.3 0.03 14.8 0.1 5.3 4 1 1 5 5 5 2 Bacterial transcriptional activator domain SRP_TPR_like PF17004.5 gi|304314872|ref|YP_003850019.1| - 4e-11 43.0 19.9 0.00025 21.1 1.6 6.4 1 1 5 6 6 6 3 Putative TPR-like repeat DUF5113 PF17140.4 gi|304314872|ref|YP_003850019.1| - 8.7e-11 41.9 12.7 1.3 8.9 0.1 8.3 2 2 5 8 8 8 1 Domain of unknown function (DUF5113) TPR_4 PF07721.14 gi|304314872|ref|YP_003850019.1| - 2.7e-10 39.9 0.0 1.6 9.6 0.0 6.6 8 0 0 8 8 6 2 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|304314872|ref|YP_003850019.1| - 5.8e-09 35.3 15.3 0.046 13.2 0.0 8.4 9 0 0 9 9 9 1 SHNi-TPR Coatomer_E PF04733.14 gi|304314872|ref|YP_003850019.1| - 1.1e-08 34.9 6.9 0.018 14.5 0.9 4.8 1 1 4 5 5 5 3 Coatomer epsilon subunit Phage_tail_X PF05489.12 gi|304314872|ref|YP_003850019.1| - 3.6e-07 29.8 0.0 13 5.6 0.0 6.5 6 1 1 7 7 7 0 Phage Tail Protein X PPR PF01535.20 gi|304314872|ref|YP_003850019.1| - 9.5e-07 28.7 23.0 12 6.4 0.1 10.3 11 0 0 11 11 10 0 PPR repeat EST1_DNA_bind PF10373.9 gi|304314872|ref|YP_003850019.1| - 1.9e-06 27.6 0.3 1.3 8.4 0.0 6.4 5 2 2 7 7 7 1 Est1 DNA/RNA binding domain NRBF2_MIT PF17169.4 gi|304314872|ref|YP_003850019.1| - 1.9e-06 28.0 23.2 2.6 8.3 0.0 9.2 4 3 5 10 10 9 1 MIT domain of nuclear receptor-binding factor 2 HTH_Bact PF18768.1 gi|304314872|ref|YP_003850019.1| - 3.9e-06 26.3 17.5 16 5.1 0.0 9.4 10 1 0 10 10 8 0 Helix-turn-helix bacterial domain TPR_20 PF14561.6 gi|304314872|ref|YP_003850019.1| - 4.3e-06 27.0 6.4 0.27 11.6 0.1 5.6 2 1 4 7 7 7 1 Tetratricopeptide repeat RPN7 PF10602.9 gi|304314872|ref|YP_003850019.1| - 6.6e-06 25.9 13.0 0.98 9.1 0.1 7.0 3 2 3 6 6 6 1 26S proteasome subunit RPN7 Rapsyn_N PF10579.9 gi|304314872|ref|YP_003850019.1| - 8.5e-06 25.8 6.5 4.1 7.6 0.0 6.4 3 2 5 8 8 8 0 Rapsyn N-terminal myristoylation and linker region ChAPs PF09295.10 gi|304314872|ref|YP_003850019.1| - 1.1e-05 24.7 5.4 2.1 7.3 0.0 4.5 1 1 4 5 5 5 1 ChAPs (Chs5p-Arf1p-binding proteins) MAS20 PF02064.15 gi|304314872|ref|YP_003850019.1| - 3.5e-05 23.9 2.9 2.1 8.5 0.0 6.6 6 3 2 8 8 7 1 MAS20 protein import receptor SAICAR_synt PF01259.18 gi|304314872|ref|YP_003850019.1| - 5.5e-05 22.9 0.1 0.38 10.3 0.0 4.2 1 1 3 5 5 5 1 SAICAR synthetase Alkyl_sulf_dimr PF14863.6 gi|304314872|ref|YP_003850019.1| - 8e-05 23.1 4.1 51 4.3 0.0 6.2 1 1 3 6 6 5 0 Alkyl sulfatase dimerisation Wzy_C_2 PF11846.8 gi|304314872|ref|YP_003850019.1| - 0.00013 22.0 3.2 11 5.9 0.0 5.1 2 1 4 6 6 6 0 Virulence factor membrane-bound polymerase, C-terminal Sel1 PF08238.12 gi|304314872|ref|YP_003850019.1| - 0.00028 21.5 20.6 3 8.7 0.1 9.1 8 1 0 9 9 9 1 Sel1 repeat TPR_3 PF07720.12 gi|304314872|ref|YP_003850019.1| - 0.0012 18.8 16.7 10 6.2 0.0 8.1 8 0 0 8 8 8 0 Tetratricopeptide repeat Rota_NSP3 PF01665.16 gi|304314872|ref|YP_003850019.1| - 0.0046 16.1 2.3 26 3.8 0.0 5.0 3 2 3 6 6 6 0 Rotavirus non-structural protein NSP3 DUF5588 PF17826.1 gi|304314872|ref|YP_003850019.1| - 0.0095 14.9 0.4 0.63 8.9 0.0 3.5 1 1 0 3 3 3 1 Family of unknown function (DUF5588) DUF4919 PF16266.5 gi|304314872|ref|YP_003850019.1| - 0.013 15.5 7.9 1.4 8.8 0.2 4.7 3 2 1 5 5 5 0 Domain of unknown function (DUF4919) DUF627 PF04781.12 gi|304314872|ref|YP_003850019.1| - 0.018 15.0 9.0 18 5.4 0.1 6.1 3 2 3 6 6 6 0 Protein of unknown function (DUF627) PknG_TPR PF16918.5 gi|304314872|ref|YP_003850019.1| - 0.02 13.7 0.1 0.19 10.4 0.0 2.3 1 1 2 3 3 3 0 Protein kinase G tetratricopeptide repeat Katanin_con80 PF13925.6 gi|304314872|ref|YP_003850019.1| - 0.054 13.5 0.1 6.3 6.8 0.0 3.3 2 1 1 3 3 3 0 con80 domain of Katanin DUF1925 PF09094.11 gi|304314872|ref|YP_003850019.1| - 0.12 12.7 0.5 58 4.1 0.0 4.8 5 2 2 7 7 3 0 Domain of unknown function (DUF1925) Lipocalin PF00061.23 gi|304314872|ref|YP_003850019.1| - 0.21 11.8 7.3 0.54 10.4 0.5 4.7 5 1 1 6 6 5 0 Lipocalin / cytosolic fatty-acid binding protein family DUF4326 PF14216.6 gi|304314872|ref|YP_003850019.1| - 0.25 12.1 7.1 43 4.9 0.0 5.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4326) CODH_A_N PF18537.1 gi|304314872|ref|YP_003850019.1| - 0.45 10.6 2.9 1.1e+02 2.9 0.1 5.2 3 2 3 7 7 7 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain Sda PF08970.10 gi|304314872|ref|YP_003850019.1| - 0.59 9.9 23.9 27 4.6 0.4 8.3 8 0 0 8 8 8 0 Sporulation inhibitor A PPTA PF01239.22 gi|304314872|ref|YP_003850019.1| - 0.64 9.8 15.8 0.68 9.7 0.0 5.7 7 0 0 7 7 5 0 Protein prenyltransferase alpha subunit repeat Pepsin-I3 PF06394.13 gi|304314872|ref|YP_003850019.1| - 6.9 6.9 11.1 1.3e+02 2.8 0.0 5.9 8 0 0 8 8 4 0 Pepsin inhibitor-3-like repeated domain MASE5 PF17178.4 gi|304314874|ref|YP_003850021.1| - 0.00017 21.5 4.7 0.00021 21.2 4.7 1.0 1 0 0 1 1 1 1 Membrane-associated sensor EIID-AGA PF03613.14 gi|304314874|ref|YP_003850021.1| - 0.28 10.3 3.7 0.13 11.5 1.4 1.5 1 1 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component DUF4131 PF13567.6 gi|304314874|ref|YP_003850021.1| - 1.1 8.9 6.0 0.24 11.0 0.7 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Pkr1 PF08636.10 gi|304314874|ref|YP_003850021.1| - 7.8 6.7 9.5 0.93 9.7 5.0 1.7 1 1 1 2 2 2 0 ER protein Pkr1 PMBR PF09373.10 gi|304314875|ref|YP_003850022.1| - 2.6e-26 90.5 1.3 2.4e-08 33.7 0.1 4.5 4 0 0 4 4 4 3 Pseudomurein-binding repeat PKD PF00801.20 gi|304314875|ref|YP_003850022.1| - 3.5e-07 29.9 1.2 1.2e-06 28.3 1.2 2.0 1 0 0 1 1 1 1 PKD domain Nre_N PF04894.12 gi|304314876|ref|YP_003850023.1| - 7.8e-84 281.7 0.0 1e-83 281.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|304314876|ref|YP_003850023.1| - 1.5e-36 124.6 0.0 2.5e-36 123.9 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DegT_DnrJ_EryC1 PF01041.17 gi|304314877|ref|YP_003850024.1| - 1e-05 25.1 0.0 2.6e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family HTH_8 PF02954.19 gi|304314877|ref|YP_003850024.1| - 0.029 14.1 0.0 0.06 13.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Aminotran_5 PF00266.19 gi|304314877|ref|YP_003850024.1| - 0.12 11.4 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V CGI-121 PF08617.10 gi|304314878|ref|YP_003850025.1| - 1.1e-06 28.8 0.0 1.4e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 HMGL-like PF00682.19 gi|304314879|ref|YP_003850026.1| - 7.7e-79 265.0 0.5 1.1e-78 264.4 0.5 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|304314879|ref|YP_003850026.1| - 5.7e-34 116.9 0.6 1.1e-33 115.9 0.6 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain UPF0020 PF01170.18 gi|304314880|ref|YP_003850027.1| - 2.8e-49 167.5 0.0 1.8e-48 164.9 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|304314880|ref|YP_003850027.1| - 3.9e-19 69.2 0.0 6.3e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 gi|304314880|ref|YP_003850027.1| - 2.2e-10 40.5 0.0 3.4e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|304314880|ref|YP_003850027.1| - 4.7e-10 39.6 0.0 0.00013 21.8 0.0 2.2 2 0 0 2 2 2 2 DNA methylase MTS PF05175.14 gi|304314880|ref|YP_003850027.1| - 6.9e-10 38.7 0.0 1.1e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain AviRa PF11599.8 gi|304314880|ref|YP_003850027.1| - 4.7e-07 29.5 0.0 0.021 14.3 0.0 2.1 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Methyltransf_25 PF13649.6 gi|304314880|ref|YP_003850027.1| - 5.2e-07 30.3 0.0 1.1e-06 29.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|304314880|ref|YP_003850027.1| - 6.2e-06 26.0 0.0 9e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CMAS PF02353.20 gi|304314880|ref|YP_003850027.1| - 2e-05 24.0 0.0 2.9e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|304314880|ref|YP_003850027.1| - 7.1e-05 22.4 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.18 gi|304314880|ref|YP_003850027.1| - 0.00024 20.5 0.0 0.00038 19.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.16 gi|304314880|ref|YP_003850027.1| - 0.0009 18.6 0.0 0.0034 16.7 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_12 PF08242.12 gi|304314880|ref|YP_003850027.1| - 0.004 17.9 0.0 0.0081 16.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|304314880|ref|YP_003850027.1| - 0.028 15.1 0.0 0.076 13.7 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Eco57I PF07669.11 gi|304314880|ref|YP_003850027.1| - 0.029 14.9 0.0 0.053 14.0 0.0 1.4 1 0 0 1 1 1 0 Eco57I restriction-modification methylase MethyltransfD12 PF02086.15 gi|304314880|ref|YP_003850027.1| - 0.035 13.8 0.0 1.4 8.5 0.0 2.1 1 1 1 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase DUF43 PF01861.16 gi|304314880|ref|YP_003850027.1| - 0.036 13.3 0.0 0.06 12.6 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain N6-adenineMlase PF10237.9 gi|304314880|ref|YP_003850027.1| - 0.14 11.9 0.0 0.42 10.4 0.0 1.5 1 1 1 2 2 2 0 Probable N6-adenine methyltransferase Mrr_cat PF04471.12 gi|304314880|ref|YP_003850027.1| - 0.17 11.9 0.2 0.65 10.0 0.1 1.9 2 0 0 2 2 2 0 Restriction endonuclease Lycopene_cycl PF05834.12 gi|304314881|ref|YP_003850028.1| - 8.2e-16 58.0 0.1 2.4e-15 56.5 0.1 1.7 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|304314881|ref|YP_003850028.1| - 5.5e-09 35.7 2.5 0.00047 19.5 0.6 3.1 2 1 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.14 gi|304314881|ref|YP_003850028.1| - 1.6e-06 27.2 0.3 0.3 9.9 0.1 3.2 3 0 0 3 3 3 2 Tryptophan halogenase DAO PF01266.24 gi|304314881|ref|YP_003850028.1| - 1e-05 25.3 3.1 0.0069 16.0 0.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|304314881|ref|YP_003850028.1| - 7.6e-05 21.6 0.1 0.00029 19.7 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|304314881|ref|YP_003850028.1| - 0.00044 19.6 1.1 0.00059 19.2 0.2 1.9 2 1 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|304314881|ref|YP_003850028.1| - 0.00055 19.4 0.2 0.00091 18.7 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|304314881|ref|YP_003850028.1| - 0.0026 17.9 0.2 0.0082 16.3 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.6 gi|304314881|ref|YP_003850028.1| - 0.0039 17.7 0.2 0.036 14.6 0.0 2.6 3 1 0 3 3 3 1 XdhC Rossmann domain Pyr_redox_2 PF07992.14 gi|304314881|ref|YP_003850028.1| - 0.014 14.7 2.6 0.059 12.6 0.1 2.4 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|304314881|ref|YP_003850028.1| - 0.068 13.1 0.3 0.13 12.1 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|304314881|ref|YP_003850028.1| - 0.13 11.5 0.1 0.3 10.3 0.1 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|304314881|ref|YP_003850028.1| - 0.15 11.3 0.6 0.89 8.7 0.3 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|304314881|ref|YP_003850028.1| - 0.16 11.3 0.1 0.3 10.4 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Clr5 PF14420.6 gi|304314881|ref|YP_003850028.1| - 0.2 11.9 0.3 15 5.9 0.1 2.4 2 0 0 2 2 2 0 Clr5 domain GIDA PF01134.22 gi|304314881|ref|YP_003850028.1| - 0.2 10.7 0.2 0.46 9.5 0.2 1.6 1 0 0 1 1 1 0 Glucose inhibited division protein A bPH_2 PF03703.14 gi|304314882|ref|YP_003850029.1| - 1.2e-15 57.4 1.5 2.8e-15 56.2 0.2 2.1 3 0 0 3 3 3 1 Bacterial PH domain Cation_ATPase_C PF00689.21 gi|304314882|ref|YP_003850029.1| - 0.0063 16.2 0.2 0.0096 15.7 0.2 1.3 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus AAA PF00004.29 gi|304314884|ref|YP_003850031.1| - 1.8e-45 154.6 0.5 7.3e-45 152.6 0.0 2.2 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|304314884|ref|YP_003850031.1| - 6.3e-16 57.9 0.9 1.2e-15 57.0 0.9 1.5 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|304314884|ref|YP_003850031.1| - 2.1e-13 50.0 0.0 5.1e-13 48.8 0.0 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|304314884|ref|YP_003850031.1| - 6.2e-08 32.9 0.1 2.1e-07 31.2 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|304314884|ref|YP_003850031.1| - 3.3e-07 30.4 1.1 2.8e-06 27.4 0.1 2.8 2 2 0 2 2 2 1 AAA domain (dynein-related subfamily) Prot_ATP_OB_N PF17758.1 gi|304314884|ref|YP_003850031.1| - 5.3e-07 29.2 0.0 1.5e-06 27.8 0.0 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain RuvB_N PF05496.12 gi|304314884|ref|YP_003850031.1| - 1.7e-06 27.9 0.2 9.3e-06 25.5 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|304314884|ref|YP_003850031.1| - 3.3e-06 27.6 0.1 5.5e-05 23.6 0.1 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|304314884|ref|YP_003850031.1| - 5.6e-05 23.4 0.2 0.0023 18.2 0.2 2.7 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|304314884|ref|YP_003850031.1| - 9e-05 21.8 0.0 0.00016 20.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|304314884|ref|YP_003850031.1| - 0.00034 20.9 0.0 0.00073 19.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|304314884|ref|YP_003850031.1| - 0.00065 19.0 0.0 0.0013 18.0 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_14 PF13173.6 gi|304314884|ref|YP_003850031.1| - 0.0012 18.8 0.0 0.0032 17.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|304314884|ref|YP_003850031.1| - 0.0015 18.3 0.0 0.0039 16.9 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|304314884|ref|YP_003850031.1| - 0.0029 17.8 0.0 0.0062 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|304314884|ref|YP_003850031.1| - 0.0042 17.6 0.2 0.013 16.1 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_11 PF13086.6 gi|304314884|ref|YP_003850031.1| - 0.0046 16.8 1.9 0.42 10.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|304314884|ref|YP_003850031.1| - 0.0051 16.7 0.0 0.11 12.4 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|304314884|ref|YP_003850031.1| - 0.0072 15.7 0.1 0.019 14.4 0.1 1.7 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|304314884|ref|YP_003850031.1| - 0.0072 16.7 0.0 0.018 15.4 0.0 1.7 1 0 0 1 1 1 1 RNA helicase Sigma54_activat PF00158.26 gi|304314884|ref|YP_003850031.1| - 0.0086 15.8 0.0 0.078 12.7 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_24 PF13479.6 gi|304314884|ref|YP_003850031.1| - 0.013 15.2 1.7 0.029 14.1 0.2 2.3 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|304314884|ref|YP_003850031.1| - 0.018 14.5 0.0 0.038 13.5 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region PhoH PF02562.16 gi|304314884|ref|YP_003850031.1| - 0.027 13.9 0.3 0.11 11.9 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein Parvo_NS1 PF01057.17 gi|304314884|ref|YP_003850031.1| - 0.036 13.2 0.0 0.085 11.9 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 gi|304314884|ref|YP_003850031.1| - 0.039 13.2 0.0 0.089 12.1 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin TsaE PF02367.17 gi|304314884|ref|YP_003850031.1| - 0.047 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|304314884|ref|YP_003850031.1| - 0.061 12.9 0.4 0.32 10.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|304314884|ref|YP_003850031.1| - 0.08 13.5 1.3 0.48 10.9 0.0 2.5 2 1 0 2 2 2 0 ABC transporter Urb2 PF10441.9 gi|304314884|ref|YP_003850031.1| - 0.088 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Urb2/Npa2 family ATPase PF06745.13 gi|304314884|ref|YP_003850031.1| - 0.088 12.1 6.1 0.14 11.5 0.0 2.9 2 1 0 3 3 3 0 KaiC AAA_17 PF13207.6 gi|304314884|ref|YP_003850031.1| - 0.091 13.2 3.2 0.16 12.4 0.1 2.9 2 1 0 2 2 2 0 AAA domain TolA_bind_tri PF16331.5 gi|304314884|ref|YP_003850031.1| - 0.11 12.6 3.2 2 8.5 0.1 2.9 2 1 1 3 3 3 0 TolA binding protein trimerisation DUF1854 PF08909.11 gi|304314884|ref|YP_003850031.1| - 0.12 12.2 2.3 0.16 11.8 0.9 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1854) NACHT PF05729.12 gi|304314884|ref|YP_003850031.1| - 0.12 12.3 0.1 0.43 10.5 0.0 1.9 1 1 1 2 2 2 0 NACHT domain AAA_13 PF13166.6 gi|304314884|ref|YP_003850031.1| - 0.21 10.2 2.2 11 4.5 2.0 2.4 2 0 0 2 2 2 0 AAA domain DUF1664 PF07889.12 gi|304314884|ref|YP_003850031.1| - 0.24 11.5 4.2 0.25 11.4 2.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF2046 PF09755.9 gi|304314884|ref|YP_003850031.1| - 0.24 10.6 8.3 0.44 9.7 8.3 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein H4 (DUF2046) ATPase_2 PF01637.18 gi|304314884|ref|YP_003850031.1| - 0.28 11.0 4.7 0.33 10.8 0.0 2.7 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea Phage_GP20 PF06810.11 gi|304314884|ref|YP_003850031.1| - 1.2 8.9 6.8 6.5 6.6 3.7 2.7 2 1 0 2 2 2 0 Phage minor structural protein GP20 HTH_3 PF01381.22 gi|304314885|ref|YP_003850032.1| - 2e-12 47.0 1.9 3.8e-12 46.1 1.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|304314885|ref|YP_003850032.1| - 7.4e-06 26.2 0.0 1.4e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|304314885|ref|YP_003850032.1| - 1.4e-05 24.9 3.1 4.3e-05 23.3 1.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|304314885|ref|YP_003850032.1| - 0.00014 21.8 3.3 0.00023 21.1 3.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_42 PF06224.12 gi|304314885|ref|YP_003850032.1| - 0.11 12.1 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF356 PF04009.12 gi|304314886|ref|YP_003850033.1| - 3.6e-39 133.3 0.1 4.1e-39 133.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) Rep_fac_C PF08542.11 gi|304314887|ref|YP_003850034.1| - 0.011 16.1 0.0 7.2 7.1 0.0 2.6 2 0 0 2 2 2 0 Replication factor C C-terminal domain SprB PF13573.6 gi|304314887|ref|YP_003850034.1| - 0.22 11.3 1.9 0.75 9.6 0.0 2.3 2 0 0 2 2 2 0 SprB repeat Mur_ligase_M PF08245.12 gi|304314889|ref|YP_003850036.1| - 1.4e-23 83.9 0.3 2.6e-23 83.0 0.3 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|304314889|ref|YP_003850036.1| - 3.6e-08 33.6 0.1 2.8e-07 30.7 0.0 2.4 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain IU_nuc_hydro PF01156.19 gi|304314889|ref|YP_003850036.1| - 0.072 12.7 0.1 0.13 11.8 0.1 1.5 1 0 0 1 1 1 0 Inosine-uridine preferring nucleoside hydrolase SRX PF09201.10 gi|304314889|ref|YP_003850036.1| - 0.096 12.5 0.0 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 SRX, signal recognition particle receptor alpha subunit Glycos_transf_4 PF00953.21 gi|304314890|ref|YP_003850037.1| - 1.9e-23 83.2 11.2 1.9e-23 83.2 11.2 3.2 3 1 1 4 4 4 3 Glycosyl transferase family 4 MraY_sig1 PF10555.9 gi|304314890|ref|YP_003850037.1| - 0.00079 18.8 2.0 0.002 17.5 2.0 1.7 1 0 0 1 1 1 1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PsbH PF00737.20 gi|304314890|ref|YP_003850037.1| - 8.8 6.1 9.3 0.12 12.1 0.6 2.5 3 0 0 3 3 3 0 Photosystem II 10 kDa phosphoprotein ATP-grasp_3 PF02655.14 gi|304314891|ref|YP_003850038.1| - 2e-14 54.0 0.0 3.6e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|304314891|ref|YP_003850038.1| - 7.1e-11 42.0 0.0 2.9e-10 40.0 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|304314891|ref|YP_003850038.1| - 2.4e-08 33.7 0.0 3.9e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|304314891|ref|YP_003850038.1| - 1.7e-05 24.2 0.0 0.035 13.4 0.0 2.2 1 1 1 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|304314891|ref|YP_003850038.1| - 2.4e-05 24.0 0.0 4.3e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|304314891|ref|YP_003850038.1| - 2.6e-05 23.8 0.1 0.00028 20.5 0.1 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.11 gi|304314891|ref|YP_003850038.1| - 0.00066 19.3 0.0 0.33 10.5 0.0 2.3 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.6 gi|304314891|ref|YP_003850038.1| - 0.0013 18.4 0.0 0.0029 17.2 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain HycI PF01750.18 gi|304314892|ref|YP_003850039.1| - 8.9e-29 99.9 0.0 1.1e-28 99.6 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease Methyltransf_25 PF13649.6 gi|304314893|ref|YP_003850040.1| - 5.2e-10 39.9 0.0 9e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|304314893|ref|YP_003850040.1| - 5.7e-08 33.3 0.0 9e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|304314893|ref|YP_003850040.1| - 6.2e-08 32.0 0.0 8.3e-08 31.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 gi|304314893|ref|YP_003850040.1| - 1.2e-07 31.6 0.0 1.8e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|304314893|ref|YP_003850040.1| - 2.4e-05 23.9 0.0 3.1e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|304314893|ref|YP_003850040.1| - 0.00027 20.5 0.0 0.00046 19.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|304314893|ref|YP_003850040.1| - 0.00067 20.4 0.0 0.00098 19.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|304314893|ref|YP_003850040.1| - 0.0046 16.6 0.0 0.0065 16.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 TehB PF03848.14 gi|304314893|ref|YP_003850040.1| - 0.087 12.2 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|304314893|ref|YP_003850040.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PRMT5 PF05185.16 gi|304314893|ref|YP_003850040.1| - 0.12 12.3 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase NikR_C PF08753.11 gi|304314894|ref|YP_003850041.1| - 4.9e-31 106.7 6.9 7.2e-31 106.2 6.9 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|304314894|ref|YP_003850041.1| - 2.7e-06 27.1 0.4 5.5e-06 26.1 0.1 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|304314894|ref|YP_003850041.1| - 0.046 13.8 0.1 0.34 11.0 0.0 2.1 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system CBS PF00571.28 gi|304314895|ref|YP_003850042.1| - 1.8e-30 105.2 4.2 6.2e-15 55.4 0.1 2.1 2 0 0 2 2 2 2 CBS domain Acetyltransf_10 PF13673.7 gi|304314895|ref|YP_003850042.1| - 0.057 13.4 0.0 1.5 8.8 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF2156 PF09924.9 gi|304314895|ref|YP_003850042.1| - 0.21 10.6 0.0 0.8 8.6 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2156) TrmB PF01978.19 gi|304314896|ref|YP_003850043.1| - 0.00052 19.8 0.6 0.15 12.0 0.1 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|304314896|ref|YP_003850043.1| - 0.0072 16.8 0.2 0.02 15.4 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain Cdc6_C PF09079.11 gi|304314896|ref|YP_003850043.1| - 0.011 15.6 0.3 4 7.5 0.0 2.6 3 0 0 3 3 3 0 CDC6, C terminal winged helix domain DUF2250 PF10007.9 gi|304314896|ref|YP_003850043.1| - 0.078 13.1 0.1 0.16 12.1 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) NUC129 PF08157.11 gi|304314896|ref|YP_003850043.1| - 0.092 13.1 0.1 0.2 12.0 0.1 1.5 1 0 0 1 1 1 0 NUC129 domain CBP_BcsR PF10945.8 gi|304314896|ref|YP_003850043.1| - 0.14 11.6 0.0 0.33 10.5 0.0 1.6 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsR B-block_TFIIIC PF04182.12 gi|304314896|ref|YP_003850043.1| - 0.18 12.0 0.0 24 5.2 0.0 2.2 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC tRNA-synt_2d PF01409.20 gi|304314897|ref|YP_003850044.1| - 3.5e-94 314.9 0.0 4.8e-94 314.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|304314897|ref|YP_003850044.1| - 1.1e-10 41.3 0.0 1.4e-09 37.7 0.0 2.4 3 0 0 3 3 3 1 Phenylalanyl tRNA synthetase beta chain CLM domain DUF2582 PF10771.9 gi|304314897|ref|YP_003850044.1| - 0.00013 22.0 0.2 0.00052 20.1 0.2 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix domain (DUF2582) TrmB PF01978.19 gi|304314897|ref|YP_003850044.1| - 0.00031 20.6 1.0 0.29 11.0 0.1 3.5 3 1 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB tRNA-synt_2b PF00587.25 gi|304314897|ref|YP_003850044.1| - 0.00092 19.2 0.0 0.0036 17.3 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) MarR_2 PF12802.7 gi|304314897|ref|YP_003850044.1| - 0.0023 17.8 0.0 0.57 10.1 0.0 2.6 2 0 0 2 2 2 1 MarR family tRNA-synt_2 PF00152.20 gi|304314897|ref|YP_003850044.1| - 0.0026 16.9 0.1 0.22 10.5 0.1 2.7 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) HTH_IclR PF09339.10 gi|304314897|ref|YP_003850044.1| - 0.018 14.8 0.0 4 7.3 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|304314897|ref|YP_003850044.1| - 0.025 14.1 0.0 5.8 6.6 0.0 3.1 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|304314897|ref|YP_003850044.1| - 0.058 13.3 0.1 11 6.0 0.0 3.0 3 0 0 3 3 3 0 MarR family AAA_assoc_C PF09821.9 gi|304314897|ref|YP_003850044.1| - 0.11 13.0 0.2 2.3 8.7 0.0 2.3 2 0 0 2 2 2 0 C-terminal AAA-associated domain CitG PF01874.16 gi|304314898|ref|YP_003850045.1| - 8.6e-80 268.4 0.0 9.6e-80 268.2 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Chalcone PF02431.15 gi|304314898|ref|YP_003850045.1| - 0.044 13.2 0.0 0.064 12.7 0.0 1.2 1 0 0 1 1 1 0 Chalcone-flavanone isomerase ALAD PF00490.21 gi|304314899|ref|YP_003850046.1| - 2.1e-141 470.7 0.3 2.4e-141 470.5 0.3 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Fer4 PF00037.27 gi|304314900|ref|YP_003850047.1| - 6.8e-10 38.3 8.9 5.2e-06 26.0 1.5 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304314900|ref|YP_003850047.1| - 1.5e-06 28.0 10.3 0.00046 20.1 1.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304314900|ref|YP_003850047.1| - 3.1e-05 24.0 21.9 0.00011 22.2 12.0 2.7 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304314900|ref|YP_003850047.1| - 8.3e-05 22.7 11.9 8.3e-05 22.7 11.9 2.7 1 1 2 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304314900|ref|YP_003850047.1| - 0.00016 22.2 12.0 0.00016 22.2 12.0 2.8 1 1 2 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314900|ref|YP_003850047.1| - 0.00017 22.5 16.2 0.02 15.8 0.8 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|304314900|ref|YP_003850047.1| - 0.002 18.5 21.6 0.014 15.8 1.6 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304314900|ref|YP_003850047.1| - 0.052 14.5 4.1 0.052 14.5 4.1 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|304314900|ref|YP_003850047.1| - 0.33 11.5 27.2 0.1 13.1 2.4 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314900|ref|YP_003850047.1| - 3.5 7.8 21.3 0.043 13.9 10.3 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain HhH-GPD PF00730.25 gi|304314901|ref|YP_003850048.1| - 3.2e-19 69.4 0.0 4.1e-19 69.0 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|304314901|ref|YP_003850048.1| - 0.00018 21.2 0.1 0.00064 19.5 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|304314901|ref|YP_003850048.1| - 0.044 14.4 0.3 0.16 12.6 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF1107 PF06526.12 gi|304314901|ref|YP_003850048.1| - 0.082 12.8 0.1 0.26 11.2 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1107) AIM24 PF01987.17 gi|304314902|ref|YP_003850049.1| - 5.5e-60 202.6 1.0 6.2e-60 202.4 1.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Chorismate_synt PF01264.21 gi|304314903|ref|YP_003850050.1| - 5.4e-138 459.2 1.5 6.1e-138 459.0 1.5 1.0 1 0 0 1 1 1 1 Chorismate synthase ThrE PF06738.12 gi|304314904|ref|YP_003850051.1| - 1.3e-40 139.3 27.6 7.9e-40 136.7 6.8 2.0 2 0 0 2 2 2 2 Putative threonine/serine exporter ThrE_2 PF12821.7 gi|304314904|ref|YP_003850051.1| - 4.7e-05 23.5 30.2 0.024 14.8 11.7 2.2 2 0 0 2 2 2 2 Threonine/Serine exporter, ThrE Lactamase_B_2 PF12706.7 gi|304314905|ref|YP_003850052.1| - 1.1e-22 80.6 0.3 1.4e-22 80.2 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|304314905|ref|YP_003850052.1| - 1.7e-12 47.6 0.0 2.5e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|304314905|ref|YP_003850052.1| - 2.1e-05 24.6 2.1 3.1e-05 24.1 0.2 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF2121 PF09894.9 gi|304314906|ref|YP_003850053.1| - 8.2e-80 267.0 2.7 1.1e-79 266.5 2.7 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) DUF2139 PF09910.9 gi|304314906|ref|YP_003850053.1| - 0.11 11.7 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2139) Thioredox_DsbH PF03190.15 gi|304314907|ref|YP_003850054.1| - 2.4e-75 252.0 0.0 3.4e-75 251.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|304314907|ref|YP_003850054.1| - 1.2e-11 44.7 0.0 3.2e-11 43.3 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|304314907|ref|YP_003850054.1| - 0.0035 17.8 0.0 0.007 16.8 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain E1-E2_ATPase PF00122.20 gi|304314908|ref|YP_003850055.1| - 4.3e-51 173.0 1.5 4.3e-51 173.0 1.5 2.2 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|304314908|ref|YP_003850055.1| - 3.8e-39 135.2 0.1 7.9e-39 134.1 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|304314908|ref|YP_003850055.1| - 1.6e-05 25.4 0.1 0.0001 22.8 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|304314908|ref|YP_003850055.1| - 6e-05 22.9 0.2 0.00061 19.6 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|304314908|ref|YP_003850055.1| - 0.13 12.4 0.0 0.46 10.6 0.0 2.0 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Rubrerythrin PF02915.17 gi|304314909|ref|YP_003850056.1| - 3.5e-40 137.6 8.3 4.2e-40 137.3 8.3 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|304314909|ref|YP_003850056.1| - 4.3e-12 46.2 2.4 5.5e-12 45.8 2.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.12 gi|304314909|ref|YP_003850056.1| - 0.00028 20.9 1.5 0.5 10.4 0.2 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF892) HypA PF01155.19 gi|304314909|ref|YP_003850056.1| - 0.0017 18.3 0.3 0.0032 17.5 0.3 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Bac_luciferase PF00296.20 gi|304314909|ref|YP_003850056.1| - 0.018 14.5 0.4 0.024 14.0 0.4 1.2 1 0 0 1 1 1 0 Luciferase-like monooxygenase FA_desaturase_2 PF03405.14 gi|304314909|ref|YP_003850056.1| - 0.043 12.6 0.2 3.3 6.5 0.0 2.0 2 0 0 2 2 2 0 Fatty acid desaturase Zn-ribbon_8 PF09723.10 gi|304314909|ref|YP_003850056.1| - 0.048 13.8 1.8 0.11 12.6 1.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain FTA4 PF13093.6 gi|304314909|ref|YP_003850056.1| - 0.085 12.7 0.3 0.11 12.4 0.3 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Arfaptin PF06456.13 gi|304314909|ref|YP_003850056.1| - 0.13 11.8 0.3 1.9 8.0 0.2 2.0 2 0 0 2 2 2 0 Arfaptin-like domain RNA_POL_M_15KD PF02150.16 gi|304314909|ref|YP_003850056.1| - 0.2 11.6 0.2 0.2 11.6 0.2 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit HalOD2 PF18547.1 gi|304314909|ref|YP_003850056.1| - 0.22 11.5 0.1 0.22 11.5 0.1 2.2 1 1 1 2 2 2 0 Halobacterial output domain 2 zf-ribbon_3 PF13248.6 gi|304314909|ref|YP_003850056.1| - 0.46 10.0 4.2 4.5 6.8 0.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|304314909|ref|YP_003850056.1| - 6.9 6.5 7.7 2.2 8.1 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Desulfoferrodox PF01880.18 gi|304314910|ref|YP_003850057.1| - 1.6e-21 76.7 0.0 2.3e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Desulfoferrodoxin Desulfoferrod_N PF06397.12 gi|304314910|ref|YP_003850057.1| - 1.9e-21 75.4 2.9 3.5e-21 74.5 2.9 1.5 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Glyoxalase PF00903.25 gi|304314911|ref|YP_003850058.1| - 8.5e-15 55.1 0.0 2.2e-14 53.7 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|304314911|ref|YP_003850058.1| - 2.4e-08 34.2 0.0 1.7e-07 31.5 0.0 2.2 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|304314911|ref|YP_003850058.1| - 1.6e-07 32.0 0.0 1.9e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|304314911|ref|YP_003850058.1| - 2.8e-06 27.3 0.0 3.3e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|304314911|ref|YP_003850058.1| - 0.12 12.4 0.0 12 6.0 0.0 2.0 1 1 1 2 2 2 0 Glyoxalase-like domain Na_H_Exchanger PF00999.21 gi|304314913|ref|YP_003850060.1| - 8.7e-52 176.2 49.2 1.1e-51 175.8 49.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MFS_1 PF07690.16 gi|304314914|ref|YP_003850061.1| - 5.7e-19 68.3 58.3 1.6e-09 37.2 28.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Herpes_US9 PF06072.11 gi|304314914|ref|YP_003850061.1| - 1.7 8.6 4.8 19 5.2 0.1 3.7 2 1 0 2 2 2 0 Alphaherpesvirus tegument protein US9 Prenyltrans PF00432.21 gi|304314915|ref|YP_003850062.1| - 4.3e-07 29.6 0.5 0.019 14.7 0.0 3.1 3 0 0 3 3 3 2 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_C PF13243.6 gi|304314915|ref|YP_003850062.1| - 0.14 11.2 0.1 0.39 9.8 0.0 1.6 1 1 0 1 1 1 0 Squalene-hopene cyclase C-terminal domain UBM PF14377.6 gi|304314916|ref|YP_003850063.1| - 0.21 11.1 0.1 0.7 9.4 0.1 1.8 2 0 0 2 2 2 0 Ubiquitin binding region tRNA_anti-codon PF01336.25 gi|304314917|ref|YP_003850064.1| - 7.7e-09 35.4 0.2 1.7e-08 34.4 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.19 gi|304314917|ref|YP_003850064.1| - 4.3e-08 33.4 11.2 4.3e-08 33.4 11.2 2.6 1 1 1 2 2 2 2 DnaJ central domain DHH PF01368.20 gi|304314917|ref|YP_003850064.1| - 0.00015 21.9 0.1 0.00033 20.8 0.1 1.5 1 0 0 1 1 1 1 DHH family S1 PF00575.23 gi|304314917|ref|YP_003850064.1| - 0.0003 21.0 0.3 0.0014 18.9 0.3 2.1 1 1 0 1 1 1 1 S1 RNA binding domain Rep_fac-A_3 PF08661.11 gi|304314917|ref|YP_003850064.1| - 0.0013 19.1 0.2 0.003 17.9 0.2 1.6 1 0 0 1 1 1 1 Replication factor A protein 3 zf-ribbon_3 PF13248.6 gi|304314917|ref|YP_003850064.1| - 0.0018 17.6 3.6 0.0018 17.6 3.6 3.4 4 0 0 4 4 4 1 zinc-ribbon domain Cript PF10235.9 gi|304314917|ref|YP_003850064.1| - 0.017 15.7 1.0 0.017 15.7 1.0 2.3 1 1 1 2 2 1 0 Microtubule-associated protein CRIPT zinc_ribbon_2 PF13240.6 gi|304314917|ref|YP_003850064.1| - 0.02 14.6 2.8 0.02 14.6 2.8 3.9 5 0 0 5 5 5 0 zinc-ribbon domain tRNA_anti_2 PF13742.6 gi|304314917|ref|YP_003850064.1| - 0.021 15.0 0.0 0.056 13.6 0.0 1.7 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain PolC_DP2 PF03833.13 gi|304314917|ref|YP_003850064.1| - 0.031 12.2 3.5 0.048 11.5 3.5 1.2 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 CDC24_OB3 PF17244.2 gi|304314917|ref|YP_003850064.1| - 0.057 13.1 0.1 0.057 13.1 0.1 1.7 2 0 0 2 2 2 0 Cell division control protein 24, OB domain 3 DUF4145 PF13643.6 gi|304314917|ref|YP_003850064.1| - 0.17 12.0 1.5 0.4 10.8 0.7 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4145) DZR PF12773.7 gi|304314917|ref|YP_003850064.1| - 1 9.4 19.0 0.14 12.2 3.1 2.6 1 1 2 3 3 3 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|304314917|ref|YP_003850064.1| - 3 8.7 15.9 51 4.7 15.9 2.4 1 1 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|304314917|ref|YP_003850064.1| - 3.6 7.7 19.3 0.98 9.5 1.4 3.4 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HhH-GPD PF00730.25 gi|304314918|ref|YP_003850065.1| - 6.5e-28 97.3 0.0 8.9e-28 96.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|304314918|ref|YP_003850065.1| - 8.7e-11 41.1 0.0 3e-10 39.4 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|304314918|ref|YP_003850065.1| - 0.00025 21.6 0.0 0.038 14.6 0.0 2.7 1 1 1 2 2 2 1 Helix-hairpin-helix domain DUF2400 PF09674.10 gi|304314918|ref|YP_003850065.1| - 0.024 14.6 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) HHH_2 PF12826.7 gi|304314918|ref|YP_003850065.1| - 0.035 14.2 0.0 6 7.0 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|304314918|ref|YP_003850065.1| - 0.1 13.0 3.0 0.22 11.9 2.8 1.7 1 1 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III HHH_8 PF14716.6 gi|304314918|ref|YP_003850065.1| - 0.13 12.7 0.0 0.94 9.9 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain GTP_EFTU PF00009.27 gi|304314919|ref|YP_003850066.1| - 2.6e-15 56.5 0.4 1.8e-12 47.2 0.4 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|304314919|ref|YP_003850066.1| - 1.2e-10 41.1 0.1 3e-09 36.6 0.1 2.0 1 1 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1 PF01926.23 gi|304314919|ref|YP_003850066.1| - 1.4e-09 38.1 0.1 1.7e-09 37.7 0.1 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|304314919|ref|YP_003850066.1| - 1.9e-08 34.1 0.1 2.4e-08 33.8 0.1 1.1 1 0 0 1 1 1 1 Ras family Roc PF08477.13 gi|304314919|ref|YP_003850066.1| - 1.2e-07 32.0 0.0 1.6e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase FeoB_N PF02421.18 gi|304314919|ref|YP_003850066.1| - 1.8e-06 27.6 0.4 0.00011 21.7 0.4 2.7 1 1 0 1 1 1 1 Ferrous iron transport protein B SRPRB PF09439.10 gi|304314919|ref|YP_003850066.1| - 1e-05 25.0 0.1 1.8e-05 24.3 0.1 1.4 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit UvrB_inter PF17757.1 gi|304314919|ref|YP_003850066.1| - 0.022 14.9 0.0 0.039 14.1 0.0 1.5 1 1 0 1 1 1 0 UvrB interaction domain AAA_28 PF13521.6 gi|304314919|ref|YP_003850066.1| - 0.04 14.2 0.0 0.052 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|304314919|ref|YP_003850066.1| - 0.052 13.2 0.0 7.9 6.1 0.0 2.1 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PGP_phosphatase PF09419.10 gi|304314919|ref|YP_003850066.1| - 0.053 13.1 0.0 0.068 12.8 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial PGP phosphatase AAA_7 PF12775.7 gi|304314919|ref|YP_003850066.1| - 0.061 12.8 0.0 0.36 10.3 0.1 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|304314919|ref|YP_003850066.1| - 0.074 12.8 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|304314919|ref|YP_003850066.1| - 0.14 12.6 0.1 0.56 10.6 0.0 1.9 2 0 0 2 2 2 0 RNA helicase EPSP_synthase PF00275.20 gi|304314920|ref|YP_003850067.1| - 9.9e-130 433.0 0.0 1.1e-129 432.8 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) tRNA-synt_1 PF00133.22 gi|304314921|ref|YP_003850068.1| - 2.8e-154 514.7 0.1 4.8e-153 510.6 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|304314921|ref|YP_003850068.1| - 1.5e-40 138.7 0.0 2.8e-40 137.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|304314921|ref|YP_003850068.1| - 1.6e-26 93.0 1.1 3.9e-15 55.5 0.0 4.0 4 0 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|304314921|ref|YP_003850068.1| - 1.4e-06 27.8 0.0 0.024 14.0 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|304314921|ref|YP_003850068.1| - 7.6e-05 22.3 0.0 0.025 14.1 0.0 2.4 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|304314921|ref|YP_003850068.1| - 0.00042 19.4 0.0 0.0051 15.8 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class I (K) Secapin PF17521.2 gi|304314921|ref|YP_003850068.1| - 0.034 13.9 0.5 0.12 12.1 0.5 1.9 1 0 0 1 1 1 0 Honey bee peptides ENTH PF01417.20 gi|304314921|ref|YP_003850068.1| - 0.12 12.4 0.1 0.28 11.2 0.0 1.7 2 0 0 2 2 2 0 ENTH domain tRNA_synthFbeta PF17759.1 gi|304314925|ref|YP_003850072.1| - 9.3e-45 152.7 0.1 1.3e-44 152.2 0.1 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|304314925|ref|YP_003850072.1| - 2.6e-16 59.7 1.3 2e-11 44.0 0.2 2.8 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|304314925|ref|YP_003850072.1| - 1.4e-12 47.7 0.0 2.5e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|304314925|ref|YP_003850072.1| - 1.1e-06 28.8 0.5 0.00033 20.8 0.1 3.1 2 1 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|304314925|ref|YP_003850072.1| - 0.0075 15.8 0.1 0.016 14.7 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) UPF0047 PF01894.17 gi|304314926|ref|YP_003850073.1| - 5.2e-38 129.7 0.0 6e-38 129.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 YojJ PF10372.9 gi|304314926|ref|YP_003850073.1| - 0.14 12.3 0.0 12 6.1 0.0 2.2 1 1 1 2 2 2 0 Bacterial membrane-spanning protein N-terminus DUF362 PF04015.12 gi|304314927|ref|YP_003850074.1| - 5.3e-48 164.0 0.0 7e-48 163.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.27 gi|304314927|ref|YP_003850074.1| - 3.7e-12 45.5 15.2 2.5e-06 27.0 4.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304314927|ref|YP_003850074.1| - 2.9e-09 37.4 6.4 9.5e-05 22.9 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304314927|ref|YP_003850074.1| - 2.8e-08 33.4 18.4 0.00012 21.9 5.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304314927|ref|YP_003850074.1| - 3.7e-08 33.1 18.3 0.00029 20.8 5.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304314927|ref|YP_003850074.1| - 9.6e-08 32.0 14.4 2.3e-07 30.8 14.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304314927|ref|YP_003850074.1| - 6.8e-06 26.9 9.4 0.0054 17.6 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|304314927|ref|YP_003850074.1| - 2.8e-05 24.2 12.5 5.9e-05 23.2 12.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304314927|ref|YP_003850074.1| - 0.0001 22.4 11.0 0.00019 21.5 11.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304314927|ref|YP_003850074.1| - 0.00015 22.2 8.6 0.082 13.5 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304314927|ref|YP_003850074.1| - 0.0003 21.2 7.2 0.13 12.7 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304314927|ref|YP_003850074.1| - 0.003 17.9 14.5 0.025 15.1 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|304314927|ref|YP_003850074.1| - 0.13 12.9 13.3 0.91 10.1 1.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|304314927|ref|YP_003850074.1| - 2.6 8.8 10.0 4 8.2 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|304314927|ref|YP_003850074.1| - 3.9 8.6 26.0 2.9 9.0 5.4 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain MCH PF02289.16 gi|304314928|ref|YP_003850075.1| - 4.2e-132 440.2 0.0 4.7e-132 440.0 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Thymidylat_synt PF00303.19 gi|304314929|ref|YP_003850076.1| - 1.3e-17 63.8 0.0 3.7e-16 59.1 0.0 2.0 2 0 0 2 2 2 2 Thymidylate synthase Meth_synt_2 PF01717.18 gi|304314930|ref|YP_003850077.1| - 5e-83 279.0 0.1 5.8e-83 278.8 0.1 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|304314930|ref|YP_003850077.1| - 4.9e-07 29.6 0.0 6.8e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|304314930|ref|YP_003850077.1| - 0.00077 18.7 0.0 0.0019 17.4 0.0 1.7 1 1 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF1894 PF08979.11 gi|304314931|ref|YP_003850078.1| - 7.7e-34 115.9 0.5 8.8e-34 115.8 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF1890 PF09001.11 gi|304314932|ref|YP_003850079.1| - 2e-51 174.1 0.0 2.2e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) Acetyltransf_1 PF00583.25 gi|304314934|ref|YP_003850081.1| - 8.5e-21 74.4 0.0 1.1e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|304314934|ref|YP_003850081.1| - 1.8e-14 53.9 0.0 2.4e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|304314934|ref|YP_003850081.1| - 7.9e-13 48.5 0.0 1e-12 48.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|304314934|ref|YP_003850081.1| - 1.6e-08 34.4 0.0 2.3e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|304314934|ref|YP_003850081.1| - 3.5e-07 30.4 0.0 2.5e-06 27.6 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|304314934|ref|YP_003850081.1| - 6.2e-06 26.9 0.0 9.4e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|304314934|ref|YP_003850081.1| - 3.4e-05 23.9 0.0 0.00012 22.1 0.0 1.9 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|304314934|ref|YP_003850081.1| - 8.9e-05 22.2 0.0 0.00012 21.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|304314934|ref|YP_003850081.1| - 0.0081 15.9 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_13 PF13880.6 gi|304314934|ref|YP_003850081.1| - 0.033 14.2 0.0 0.065 13.2 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase DUF1999 PF09390.10 gi|304314934|ref|YP_003850081.1| - 0.038 13.6 0.1 0.23 11.1 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1999) Acetyltransf_4 PF13420.7 gi|304314934|ref|YP_003850081.1| - 0.059 13.5 0.0 0.094 12.9 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|304314934|ref|YP_003850081.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.5 1 1 0 1 1 1 0 Putative acetyl-transferase DUF354 PF04007.12 gi|304314935|ref|YP_003850082.1| - 5.2e-193 640.6 0.8 5.9e-193 640.4 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.19 gi|304314935|ref|YP_003850082.1| - 4.6e-05 22.4 0.0 6.8e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase LpxB PF02684.15 gi|304314935|ref|YP_003850082.1| - 0.0019 17.1 0.0 0.0031 16.4 0.0 1.3 1 0 0 1 1 1 1 Lipid-A-disaccharide synthetase cobW PF02492.19 gi|304314936|ref|YP_003850083.1| - 5.6e-30 104.2 0.2 7.2e-30 103.9 0.2 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|304314936|ref|YP_003850083.1| - 5.7e-14 51.7 0.9 4.4e-08 32.4 1.0 2.1 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|304314936|ref|YP_003850083.1| - 1.2e-06 28.5 0.1 0.047 13.6 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|304314936|ref|YP_003850083.1| - 8.6e-06 25.4 0.8 0.038 13.5 0.3 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.17 gi|304314936|ref|YP_003850083.1| - 9.9e-05 22.2 0.1 0.19 11.5 0.0 2.1 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|304314936|ref|YP_003850083.1| - 0.00082 19.3 0.0 0.0016 18.4 0.0 1.5 1 0 0 1 1 1 1 NTPase Arf PF00025.21 gi|304314936|ref|YP_003850083.1| - 0.0011 18.5 0.1 0.12 11.8 0.0 2.2 2 0 0 2 2 2 1 ADP-ribosylation factor family MobB PF03205.14 gi|304314936|ref|YP_003850083.1| - 0.003 17.5 0.1 0.0073 16.2 0.1 1.9 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.6 gi|304314936|ref|YP_003850083.1| - 0.007 16.8 0.1 0.029 14.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|304314936|ref|YP_003850083.1| - 0.011 15.4 0.0 0.035 13.8 0.0 1.9 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|304314936|ref|YP_003850083.1| - 0.012 15.8 0.1 0.025 14.8 0.0 1.6 2 0 0 2 2 1 0 AAA domain TsaE PF02367.17 gi|304314936|ref|YP_003850083.1| - 0.014 15.4 0.0 0.039 14.0 0.0 1.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IMPDH PF00478.25 gi|304314936|ref|YP_003850083.1| - 0.014 14.5 2.4 0.19 10.7 0.9 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain AAA_29 PF13555.6 gi|304314936|ref|YP_003850083.1| - 0.025 14.3 0.0 0.083 12.6 0.0 1.9 3 0 0 3 3 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|304314936|ref|YP_003850083.1| - 0.052 13.9 0.0 0.085 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|304314936|ref|YP_003850083.1| - 0.059 12.6 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|304314936|ref|YP_003850083.1| - 0.069 13.7 0.0 0.12 12.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|304314936|ref|YP_003850083.1| - 0.073 13.5 0.0 0.22 11.9 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|304314936|ref|YP_003850083.1| - 0.078 13.2 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|304314936|ref|YP_003850083.1| - 0.083 12.6 0.1 0.9 9.3 0.0 2.2 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain ATPase_2 PF01637.18 gi|304314936|ref|YP_003850083.1| - 0.086 12.7 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea dNK PF01712.19 gi|304314936|ref|YP_003850083.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase TrwB_AAD_bind PF10412.9 gi|304314936|ref|YP_003850083.1| - 0.12 11.2 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_7 PF12775.7 gi|304314936|ref|YP_003850083.1| - 0.19 11.2 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region HypA PF01155.19 gi|304314937|ref|YP_003850084.1| - 1.1e-29 102.7 1.1 1.3e-29 102.5 1.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Anti-TRAP PF15777.5 gi|304314937|ref|YP_003850084.1| - 0.053 13.5 0.4 0.085 12.8 0.4 1.3 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein UPF0547 PF10571.9 gi|304314937|ref|YP_003850084.1| - 0.35 11.0 4.3 2.1 8.5 0.5 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Pribosyltran_N PF13793.6 gi|304314938|ref|YP_003850085.1| - 2.4e-30 104.8 0.0 3.6e-29 101.0 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|304314938|ref|YP_003850085.1| - 1.5e-19 70.1 2.0 5.5e-19 68.2 0.6 2.2 1 1 1 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|304314938|ref|YP_003850085.1| - 2e-09 37.7 2.9 2.3e-09 37.6 1.4 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|304314938|ref|YP_003850085.1| - 0.0012 18.4 0.2 0.0019 17.7 0.2 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Lon_C PF05362.13 gi|304314939|ref|YP_003850086.1| - 2.8e-32 111.9 3.1 4.5e-32 111.3 3.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|304314939|ref|YP_003850086.1| - 2e-31 109.4 0.0 5.4e-22 78.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|304314939|ref|YP_003850086.1| - 4.7e-18 65.5 0.0 1.6e-09 37.7 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|304314939|ref|YP_003850086.1| - 4.4e-15 55.6 0.0 1.4e-09 37.6 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|304314939|ref|YP_003850086.1| - 3.2e-12 46.6 0.0 6.8e-05 22.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|304314939|ref|YP_003850086.1| - 2.3e-10 40.0 0.1 0.00018 20.7 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain ChlI PF13541.6 gi|304314939|ref|YP_003850086.1| - 3e-09 36.7 0.3 7.6e-09 35.5 0.3 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Sigma54_activ_2 PF14532.6 gi|304314939|ref|YP_003850086.1| - 1.1e-08 35.3 0.0 0.0044 17.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA PF00004.29 gi|304314939|ref|YP_003850086.1| - 5.4e-07 30.1 0.0 0.0045 17.4 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|304314939|ref|YP_003850086.1| - 8e-06 25.7 0.0 0.023 14.6 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|304314939|ref|YP_003850086.1| - 8.7e-06 26.1 0.0 0.00016 22.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|304314939|ref|YP_003850086.1| - 9.1e-06 25.5 0.0 0.027 14.2 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|304314939|ref|YP_003850086.1| - 6.9e-05 22.4 0.1 0.0013 18.2 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|304314939|ref|YP_003850086.1| - 0.00011 22.7 0.0 0.00034 21.1 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|304314939|ref|YP_003850086.1| - 0.00014 21.6 0.0 0.066 12.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|304314939|ref|YP_003850086.1| - 0.00024 20.9 0.0 0.0021 17.8 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_PrkA PF08298.11 gi|304314939|ref|YP_003850086.1| - 0.0003 19.8 0.1 0.14 11.0 0.1 2.4 2 0 0 2 2 2 2 PrkA AAA domain NTPase_1 PF03266.15 gi|304314939|ref|YP_003850086.1| - 0.00032 20.7 0.0 0.6 10.0 0.0 2.8 2 0 0 2 2 2 2 NTPase AAA_19 PF13245.6 gi|304314939|ref|YP_003850086.1| - 0.0011 19.4 0.1 0.073 13.4 0.1 2.8 1 1 0 1 1 1 1 AAA domain MCM_lid PF17855.1 gi|304314939|ref|YP_003850086.1| - 0.0012 19.2 0.2 0.0028 18.1 0.2 1.5 1 0 0 1 1 1 1 MCM AAA-lid domain NACHT PF05729.12 gi|304314939|ref|YP_003850086.1| - 0.0035 17.3 0.0 0.012 15.5 0.0 1.9 2 0 0 2 2 1 1 NACHT domain AAA_2 PF07724.14 gi|304314939|ref|YP_003850086.1| - 0.0069 16.5 0.0 2.9 8.0 0.0 3.0 4 0 0 4 4 2 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|304314939|ref|YP_003850086.1| - 0.011 14.9 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TniB PF05621.11 gi|304314939|ref|YP_003850086.1| - 0.014 14.8 0.1 0.16 11.4 0.0 2.6 2 1 0 2 2 2 0 Bacterial TniB protein ABC_tran PF00005.27 gi|304314939|ref|YP_003850086.1| - 0.02 15.4 0.0 0.072 13.6 0.0 2.0 1 0 0 1 1 1 0 ABC transporter RsgA_GTPase PF03193.16 gi|304314939|ref|YP_003850086.1| - 0.021 14.7 0.0 0.08 12.9 0.0 2.0 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|304314939|ref|YP_003850086.1| - 0.025 14.3 0.0 0.08 12.7 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain PhoH PF02562.16 gi|304314939|ref|YP_003850086.1| - 0.031 13.7 0.0 0.08 12.4 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_18 PF13238.6 gi|304314939|ref|YP_003850086.1| - 0.036 14.6 0.0 0.17 12.4 0.0 2.2 2 0 0 2 2 1 0 AAA domain Parvo_NS1 PF01057.17 gi|304314939|ref|YP_003850086.1| - 0.038 13.1 0.0 0.064 12.3 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_10 PF12846.7 gi|304314939|ref|YP_003850086.1| - 0.046 12.6 0.0 0.11 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_24 PF13479.6 gi|304314939|ref|YP_003850086.1| - 0.063 13.0 0.0 0.18 11.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.22 gi|304314939|ref|YP_003850086.1| - 0.071 13.5 0.0 0.46 10.9 0.0 2.2 2 0 0 2 2 2 0 RNA helicase ResIII PF04851.15 gi|304314939|ref|YP_003850086.1| - 0.13 12.2 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit ATP-cone PF03477.16 gi|304314939|ref|YP_003850086.1| - 0.46 11.1 3.3 14 6.4 0.1 2.9 2 1 0 2 2 2 0 ATP cone domain TraL PF07178.11 gi|304314939|ref|YP_003850086.1| - 1.4 9.5 2.9 2.7 8.5 2.9 1.4 1 0 0 1 1 1 0 TraL protein PAS_9 PF13426.7 gi|304314940|ref|YP_003850087.1| - 7.7e-53 177.1 1.6 1e-19 70.7 0.1 3.2 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|304314940|ref|YP_003850087.1| - 1.4e-47 160.4 1.0 1.5e-16 60.4 0.1 3.2 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|304314940|ref|YP_003850087.1| - 1.8e-43 147.2 0.0 4.4e-17 62.3 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|304314940|ref|YP_003850087.1| - 2.9e-29 100.6 1.0 2.7e-09 36.8 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|304314940|ref|YP_003850087.1| - 5.1e-25 87.6 0.1 6.8e-11 42.3 0.0 3.4 3 0 0 3 3 3 2 PAS fold MEKHLA PF08670.11 gi|304314940|ref|YP_003850087.1| - 2.3e-07 30.8 0.0 5.1e-05 23.2 0.0 2.9 2 1 1 3 3 3 1 MEKHLA domain PAS_7 PF12860.7 gi|304314940|ref|YP_003850087.1| - 8.1e-06 26.0 1.6 0.33 11.1 0.0 4.7 3 2 0 4 4 4 2 PAS fold PAS_11 PF14598.6 gi|304314940|ref|YP_003850087.1| - 3e-05 24.1 0.0 0.022 14.9 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.6 gi|304314940|ref|YP_003850087.1| - 8.4e-05 23.1 0.0 0.065 13.8 0.0 3.0 3 0 0 3 3 3 1 PAS domain PAS_5 PF07310.13 gi|304314940|ref|YP_003850087.1| - 0.035 13.9 0.0 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 PAS domain EMP24_GP25L PF01105.24 gi|304314940|ref|YP_003850087.1| - 0.069 13.1 1.7 0.32 10.9 0.1 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD GATase_3 PF07685.14 gi|304314941|ref|YP_003850088.1| - 1.8e-55 187.6 0.0 3.5e-55 186.6 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|304314941|ref|YP_003850088.1| - 1.7e-23 83.5 0.0 1.4e-22 80.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|304314941|ref|YP_003850088.1| - 8e-23 80.9 0.0 1.3e-22 80.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SNO PF01174.19 gi|304314941|ref|YP_003850088.1| - 0.00035 20.5 0.0 0.00064 19.6 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.28 gi|304314941|ref|YP_003850088.1| - 0.0017 18.2 0.0 0.0044 16.8 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DUF1611 PF07755.11 gi|304314941|ref|YP_003850088.1| - 0.0019 17.5 0.0 0.54 9.5 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1611_C) P-loop domain MobB PF03205.14 gi|304314941|ref|YP_003850088.1| - 0.0046 16.9 0.1 0.13 12.1 0.0 2.6 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B Peptidase_C26 PF07722.13 gi|304314941|ref|YP_003850088.1| - 0.071 12.8 0.2 0.25 11.1 0.2 1.9 1 1 0 1 1 1 0 Peptidase C26 Na_sulph_symp PF00939.19 gi|304314942|ref|YP_003850089.1| - 3.6e-59 201.1 36.3 4.3e-59 200.8 36.3 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|304314942|ref|YP_003850089.1| - 3.2e-37 128.3 49.3 1.6e-21 76.8 13.1 2.1 1 1 1 2 2 2 2 Citrate transporter DUF1624 PF07786.12 gi|304314943|ref|YP_003850090.1| - 5.7e-66 222.3 12.7 6.5e-66 222.1 12.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.22 gi|304314943|ref|YP_003850090.1| - 3e-12 46.3 23.2 1.9e-06 27.2 9.1 2.1 1 1 1 2 2 2 2 Acyltransferase family DUF3382 PF11862.8 gi|304314943|ref|YP_003850090.1| - 0.038 14.3 3.1 0.78 10.0 0.9 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF3382) OpgC_C PF10129.9 gi|304314943|ref|YP_003850090.1| - 0.058 12.3 15.1 0.19 10.6 6.5 2.7 1 1 1 2 2 2 0 OpgC protein TraX PF05857.11 gi|304314943|ref|YP_003850090.1| - 0.081 13.0 9.1 0.49 10.4 9.1 2.0 1 1 0 1 1 1 0 TraX protein ACP_syn_III_C PF08541.10 gi|304314944|ref|YP_003850091.1| - 1.2e-10 41.4 0.0 2.4e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|304314944|ref|YP_003850091.1| - 1e-05 25.1 0.3 1.5e-05 24.5 0.3 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 gi|304314944|ref|YP_003850091.1| - 1.1e-05 25.3 0.1 1.6e-05 24.9 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|304314944|ref|YP_003850091.1| - 3.8e-05 23.4 0.0 0.02 14.6 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal Phosphatase PF15698.5 gi|304314944|ref|YP_003850091.1| - 0.022 13.9 0.1 0.033 13.3 0.1 1.2 1 0 0 1 1 1 0 Phosphatase ACP_syn_III PF08545.10 gi|304314944|ref|YP_003850091.1| - 0.15 11.9 2.9 0.16 11.8 1.1 2.0 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|304314945|ref|YP_003850092.1| - 1.5e-30 106.4 0.5 2.3e-30 105.8 0.5 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|304314945|ref|YP_003850092.1| - 1.8e-11 43.8 0.9 1.1e-10 41.3 1.0 2.3 1 1 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|304314945|ref|YP_003850092.1| - 2.5e-05 24.0 4.6 4.1e-05 23.3 2.7 2.3 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|304314945|ref|YP_003850092.1| - 0.0009 19.2 0.2 0.37 10.8 0.0 2.6 2 0 0 2 2 2 2 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|304314945|ref|YP_003850092.1| - 0.0044 16.9 0.2 0.48 10.3 0.1 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SpoVAD PF07451.11 gi|304314945|ref|YP_003850092.1| - 0.021 13.5 0.1 0.038 12.7 0.1 1.3 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) CvfB_WH PF17783.1 gi|304314945|ref|YP_003850092.1| - 0.17 11.7 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 CvfB-like winged helix domain Cpn60_TCP1 PF00118.24 gi|304314946|ref|YP_003850093.1| - 1.1e-184 614.7 24.7 1.2e-184 614.5 24.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3924 PF13062.6 gi|304314946|ref|YP_003850093.1| - 0.019 14.9 0.0 0.06 13.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3924) Ribosomal_S13 PF00416.22 gi|304314946|ref|YP_003850093.1| - 1.8 9.0 5.2 2.9 8.3 0.6 2.8 2 0 0 2 2 2 0 Ribosomal protein S13/S18 Transglut_core PF01841.19 gi|304314947|ref|YP_003850094.1| - 3.6e-25 88.6 4.7 5.8e-25 87.9 2.7 2.1 2 0 0 2 2 2 1 Transglutaminase-like superfamily PMBR PF09373.10 gi|304314947|ref|YP_003850094.1| - 2e-15 56.1 0.0 0.00092 19.3 0.0 4.7 4 0 0 4 4 4 3 Pseudomurein-binding repeat Peptidase_C71 PF12386.8 gi|304314947|ref|YP_003850094.1| - 6.5e-06 25.9 1.1 2.4e-05 24.0 1.1 2.0 1 0 0 1 1 1 1 Pseudomurein endo-isopeptidase Pei DUF553 PF04473.12 gi|304314947|ref|YP_003850094.1| - 0.00026 20.5 0.4 0.092 12.3 0.0 3.2 2 1 0 2 2 2 1 Transglutaminase-like domain Transglut_core3 PF13471.6 gi|304314947|ref|YP_003850094.1| - 0.081 12.8 0.9 0.16 11.8 0.9 1.5 1 0 0 1 1 1 0 Transglutaminase-like superfamily Cyclase PF04199.13 gi|304314948|ref|YP_003850095.1| - 8.8e-18 64.9 0.0 8.7e-15 55.2 0.0 2.1 1 1 0 1 1 1 1 Putative cyclase ChpA-C PF03777.13 gi|304314948|ref|YP_003850095.1| - 0.063 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 ChpA-C SlyX PF04102.12 gi|304314949|ref|YP_003850096.1| - 0.00091 19.8 0.4 0.00091 19.8 0.4 2.6 3 1 0 3 3 3 1 SlyX DUF2353 PF09789.9 gi|304314949|ref|YP_003850096.1| - 0.0055 16.1 5.1 0.0066 15.8 5.1 1.2 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) Wtap PF17098.5 gi|304314949|ref|YP_003850096.1| - 0.008 16.1 4.0 0.033 14.1 4.0 2.2 1 1 0 1 1 1 1 WTAP/Mum2p family Med9 PF07544.13 gi|304314949|ref|YP_003850096.1| - 0.017 15.2 5.7 0.017 15.2 5.7 1.9 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Spc7 PF08317.11 gi|304314949|ref|YP_003850096.1| - 0.023 13.6 5.5 0.04 12.8 5.4 1.5 1 1 0 1 1 1 0 Spc7 kinetochore protein PKcGMP_CC PF16808.5 gi|304314949|ref|YP_003850096.1| - 0.042 13.7 4.0 0.042 13.7 4.0 3.6 2 1 2 4 4 4 0 Coiled-coil N-terminus of cGMP-dependent protein kinase P4Ha_N PF08336.11 gi|304314949|ref|YP_003850096.1| - 0.053 13.5 4.9 0.12 12.4 0.2 2.5 2 1 1 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Baculo_PEP_C PF04513.12 gi|304314949|ref|YP_003850096.1| - 0.054 13.5 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Angiomotin_C PF12240.8 gi|304314949|ref|YP_003850096.1| - 0.074 12.6 4.5 0.1 12.2 3.7 1.6 1 1 0 1 1 1 0 Angiomotin C terminal TMPIT PF07851.13 gi|304314949|ref|YP_003850096.1| - 0.14 11.4 4.1 0.73 9.0 2.2 1.9 1 1 1 2 2 2 0 TMPIT-like protein XLF PF09302.11 gi|304314949|ref|YP_003850096.1| - 0.39 10.9 4.3 1 9.5 3.9 1.9 1 1 0 1 1 1 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component APG6_N PF17675.1 gi|304314949|ref|YP_003850096.1| - 0.42 11.1 9.7 0.64 10.6 8.5 2.0 1 1 1 2 2 2 0 Apg6 coiled-coil region DUF4200 PF13863.6 gi|304314949|ref|YP_003850096.1| - 1.3 9.4 11.2 16 5.9 11.2 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) PAP2 PF01569.21 gi|304314950|ref|YP_003850097.1| - 2.3e-22 79.2 5.7 2.3e-22 79.2 5.7 1.5 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|304314950|ref|YP_003850097.1| - 3.1e-10 40.1 9.9 7e-10 38.9 9.9 1.6 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|304314950|ref|YP_003850097.1| - 0.0065 17.0 0.6 0.0065 17.0 0.6 2.2 2 1 1 3 3 3 1 PAP2 superfamily C-terminal DUF212 PF02681.14 gi|304314950|ref|YP_003850097.1| - 0.016 15.4 0.5 2.3 8.4 0.1 2.2 1 1 1 2 2 2 0 Divergent PAP2 family Semialdhyde_dhC PF02774.18 gi|304314951|ref|YP_003850098.1| - 1.4e-45 155.7 0.0 2.4e-45 154.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|304314951|ref|YP_003850098.1| - 4.6e-37 127.1 0.0 8.3e-37 126.3 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|304314951|ref|YP_003850098.1| - 0.00011 22.4 0.0 0.00018 21.6 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_C PF02800.20 gi|304314951|ref|YP_003850098.1| - 0.0027 17.3 0.1 0.018 14.6 0.0 2.3 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DXP_reductoisom PF02670.16 gi|304314951|ref|YP_003850098.1| - 0.0036 18.0 0.0 0.013 16.2 0.0 1.9 2 0 0 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Sacchrp_dh_NADP PF03435.18 gi|304314951|ref|YP_003850098.1| - 0.054 13.7 0.0 0.085 13.1 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DUF3655 PF12379.8 gi|304314951|ref|YP_003850098.1| - 0.15 12.4 0.6 5.4 7.4 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3655) FSH1 PF03959.13 gi|304314951|ref|YP_003850098.1| - 0.23 11.1 0.0 0.43 10.2 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase (FSH1) DapB_C PF05173.14 gi|304314952|ref|YP_003850099.1| - 1.7e-40 137.8 0.1 2.7e-40 137.2 0.1 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|304314952|ref|YP_003850099.1| - 1.2e-35 122.4 2.6 1.2e-35 122.3 1.2 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|304314952|ref|YP_003850099.1| - 3.6e-05 24.0 0.2 7.8e-05 22.9 0.2 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Peripla_BP_6 PF13458.6 gi|304314952|ref|YP_003850099.1| - 8.7e-05 22.3 0.0 0.00011 22.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein NAD_binding_3 PF03447.16 gi|304314952|ref|YP_003850099.1| - 0.0014 19.3 0.1 0.0026 18.4 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|304314952|ref|YP_003850099.1| - 0.005 17.5 0.9 0.012 16.3 0.9 1.6 1 0 0 1 1 1 1 CoA binding domain 3Beta_HSD PF01073.19 gi|304314952|ref|YP_003850099.1| - 0.036 13.1 0.4 0.097 11.7 0.4 1.8 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family GFO_IDH_MocA PF01408.22 gi|304314952|ref|YP_003850099.1| - 0.062 14.1 0.4 1.6 9.6 0.1 2.6 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold RmlD_sub_bind PF04321.17 gi|304314952|ref|YP_003850099.1| - 0.071 12.2 0.1 0.13 11.4 0.1 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Epimerase PF01370.21 gi|304314952|ref|YP_003850099.1| - 0.09 12.2 0.1 0.16 11.4 0.1 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Ribosomal_L10 PF00466.20 gi|304314952|ref|YP_003850099.1| - 0.17 12.0 0.0 0.34 11.1 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L10 DHDPS PF00701.22 gi|304314953|ref|YP_003850100.1| - 3.3e-90 301.7 0.0 3.7e-90 301.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CutC PF03932.14 gi|304314953|ref|YP_003850100.1| - 0.083 12.4 0.5 0.22 11.0 0.1 1.9 2 0 0 2 2 2 0 CutC family AA_kinase PF00696.28 gi|304314954|ref|YP_003850101.1| - 2e-49 168.4 0.9 3.4e-49 167.6 0.9 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|304314954|ref|YP_003850101.1| - 7.3e-23 80.1 0.4 1.2e-11 44.2 0.0 2.5 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|304314954|ref|YP_003850101.1| - 5.9e-13 48.3 0.4 1.5e-05 24.7 0.0 2.8 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|304314954|ref|YP_003850101.1| - 0.00013 21.9 0.2 0.46 10.5 0.0 2.7 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|304314954|ref|YP_003850101.1| - 0.00018 22.1 0.6 0.25 12.0 0.1 2.5 2 0 0 2 2 2 2 ACT domain DUF2007 PF09413.10 gi|304314954|ref|YP_003850101.1| - 0.0029 17.7 0.0 0.074 13.2 0.0 2.6 2 0 0 2 2 2 1 Putative prokaryotic signal transducing protein Synapsin_N PF10581.9 gi|304314954|ref|YP_003850101.1| - 0.13 12.2 0.1 0.26 11.3 0.1 1.4 1 0 0 1 1 1 0 Synapsin N-terminal Ribosomal_S17e PF00833.18 gi|304314955|ref|YP_003850102.1| - 8.3e-19 67.7 0.7 8.7e-19 67.6 0.7 1.0 1 0 0 1 1 1 1 Ribosomal S17 CM_2 PF01817.21 gi|304314956|ref|YP_003850103.1| - 2.1e-17 63.2 7.4 3e-17 62.7 7.4 1.2 1 0 0 1 1 1 1 Chorismate mutase type II Phage_CII PF05269.11 gi|304314956|ref|YP_003850103.1| - 0.063 13.5 0.6 0.42 10.9 0.6 2.0 1 1 0 1 1 1 0 Bacteriophage CII protein GHMP_kinases_N PF00288.26 gi|304314957|ref|YP_003850104.1| - 8.3e-12 45.2 2.6 8.3e-12 45.2 2.6 2.5 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|304314957|ref|YP_003850104.1| - 2.7e-06 27.7 0.5 8.7e-06 26.0 0.2 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal Peptidase_S49 PF01343.18 gi|304314958|ref|YP_003850105.1| - 6.9e-54 182.0 0.5 9.3e-54 181.6 0.5 1.2 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.16 gi|304314958|ref|YP_003850105.1| - 0.00012 21.2 0.1 0.00015 20.9 0.1 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|304314958|ref|YP_003850105.1| - 0.02 14.8 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 Clp protease ECH_1 PF00378.20 gi|304314958|ref|YP_003850105.1| - 0.039 13.3 0.1 0.8 9.0 0.0 2.5 1 1 1 3 3 3 0 Enoyl-CoA hydratase/isomerase KR PF08659.10 gi|304314958|ref|YP_003850105.1| - 0.041 13.8 0.0 0.2 11.6 0.0 2.0 2 0 0 2 2 2 0 KR domain Succ_CoA_lig PF13607.6 gi|304314958|ref|YP_003850105.1| - 0.041 13.7 0.0 0.08 12.7 0.0 1.5 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain Ligase_CoA PF00549.19 gi|304314958|ref|YP_003850105.1| - 0.071 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 CoA-ligase Thioredoxin_3 PF13192.6 gi|304314959|ref|YP_003850106.1| - 2.8e-15 56.1 0.2 3.5e-15 55.8 0.2 1.1 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|304314959|ref|YP_003850106.1| - 3.5e-13 49.5 0.2 4.4e-13 49.2 0.2 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.20 gi|304314959|ref|YP_003850106.1| - 3.2e-06 27.0 0.0 3.8e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.14 gi|304314959|ref|YP_003850106.1| - 1.1e-05 25.7 0.0 1.2e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DSBA PF01323.20 gi|304314959|ref|YP_003850106.1| - 1.7e-05 24.7 0.2 0.013 15.2 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|304314959|ref|YP_003850106.1| - 7.3e-05 23.0 0.1 0.0043 17.2 0.1 2.0 1 1 1 2 2 2 2 Thioredoxin DUF1223 PF06764.11 gi|304314959|ref|YP_003850106.1| - 0.0099 15.9 0.0 0.036 14.1 0.0 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF1223) Thioredoxin_2 PF13098.6 gi|304314959|ref|YP_003850106.1| - 0.057 13.9 0.4 0.089 13.3 0.4 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain CbiD PF01888.17 gi|304314960|ref|YP_003850107.1| - 1.4e-90 303.0 0.5 1.8e-90 302.7 0.5 1.1 1 0 0 1 1 1 1 CbiD MoaC PF01967.21 gi|304314961|ref|YP_003850108.1| - 6.8e-52 175.2 2.5 7.8e-52 175.0 2.5 1.0 1 0 0 1 1 1 1 MoaC family DEAD PF00270.29 gi|304314962|ref|YP_003850109.1| - 1.1e-14 54.6 0.0 3.3e-14 53.0 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_2 PF12826.7 gi|304314962|ref|YP_003850109.1| - 2.1e-07 30.9 0.1 1.2e-05 25.3 0.0 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif Helicase_C PF00271.31 gi|304314962|ref|YP_003850109.1| - 3.6e-07 30.5 0.2 5.6e-06 26.7 0.1 2.6 2 1 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|304314962|ref|YP_003850109.1| - 8.3e-07 29.2 0.0 5.7e-06 26.4 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|304314962|ref|YP_003850109.1| - 1.4e-06 28.8 0.1 6.6e-06 26.6 0.1 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|304314962|ref|YP_003850109.1| - 0.00011 21.8 0.4 0.0039 17.0 0.0 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|304314962|ref|YP_003850109.1| - 0.0043 17.3 0.1 0.048 13.9 0.1 2.6 2 1 0 2 2 2 1 Helix-hairpin-helix motif IstB_IS21 PF01695.17 gi|304314962|ref|YP_003850109.1| - 0.0054 16.5 0.0 0.039 13.7 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein HHH_8 PF14716.6 gi|304314962|ref|YP_003850109.1| - 0.0055 17.1 0.1 0.019 15.3 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain PhoH PF02562.16 gi|304314962|ref|YP_003850109.1| - 0.024 14.1 0.0 0.053 13.0 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_30 PF13604.6 gi|304314962|ref|YP_003850109.1| - 0.028 14.1 0.0 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2115 PF09888.9 gi|304314963|ref|YP_003850110.1| - 2.3e-37 129.0 0.1 1.2e-36 126.7 0.1 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) DUF2115 PF09888.9 gi|304314964|ref|YP_003850111.1| - 4.9e-50 170.2 0.0 5.6e-50 170.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) Phage_int_SAM_5 PF13102.6 gi|304314964|ref|YP_003850111.1| - 0.12 12.7 0.1 0.2 12.0 0.1 1.3 1 0 0 1 1 1 0 Phage integrase SAM-like domain DUF308 PF03729.13 gi|304314965|ref|YP_003850112.1| - 5.7e-08 33.0 52.7 3e-06 27.5 22.5 3.1 2 1 1 3 3 3 2 Short repeat of unknown function (DUF308) DUF4418 PF14387.6 gi|304314965|ref|YP_003850112.1| - 1.4 9.1 22.3 0.038 14.2 3.4 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4418) COPI_assoc PF08507.10 gi|304314965|ref|YP_003850112.1| - 5.8 7.0 34.8 0.015 15.3 16.8 2.1 1 1 1 2 2 2 0 COPI associated protein DUF2098 PF09871.9 gi|304314966|ref|YP_003850113.1| - 6.9e-24 84.0 0.7 7.9e-24 83.8 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) YdfZ PF14001.6 gi|304314966|ref|YP_003850113.1| - 0.0044 17.4 0.3 0.011 16.1 0.2 1.7 2 0 0 2 2 2 1 YdfZ protein PRC PF05239.16 gi|304314967|ref|YP_003850114.1| - 3.9e-13 49.3 1.0 4.3e-13 49.1 1.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain CBS PF00571.28 gi|304314968|ref|YP_003850115.1| - 1.3e-29 102.4 2.9 6.2e-14 52.2 0.2 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|304314968|ref|YP_003850115.1| - 2e-14 53.5 15.3 1.4e-08 34.4 3.2 3.3 2 2 1 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|304314968|ref|YP_003850115.1| - 5.3e-05 23.0 5.0 5.3e-05 23.0 5.0 2.0 1 1 1 2 2 2 1 Peptidase M50B-like DUF3267 PF11667.8 gi|304314968|ref|YP_003850115.1| - 0.02 15.2 3.2 0.02 15.2 3.2 2.6 3 0 0 3 3 3 0 Putative zincin peptidase GAF PF01590.26 gi|304314968|ref|YP_003850115.1| - 0.05 14.2 0.1 0.61 10.7 0.0 2.2 1 1 1 2 2 2 0 GAF domain Radical_SAM PF04055.21 gi|304314969|ref|YP_003850116.1| - 0.00076 19.9 0.7 0.0011 19.4 0.3 1.5 2 0 0 2 2 2 1 Radical SAM superfamily DUF2192 PF09958.9 gi|304314969|ref|YP_003850116.1| - 0.05 13.1 0.1 0.069 12.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2192) Radical_SAM_C PF16199.5 gi|304314970|ref|YP_003850117.1| - 2.2e-28 98.1 0.1 3.5e-28 97.5 0.1 1.3 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|304314970|ref|YP_003850117.1| - 1.3e-14 54.9 0.1 1.5e-13 51.5 0.0 2.3 2 1 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|304314970|ref|YP_003850117.1| - 8.5e-08 32.5 0.3 6.7e-07 29.6 0.0 2.3 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|304314970|ref|YP_003850117.1| - 0.00014 21.8 0.1 0.00029 20.8 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain MTTB PF06253.11 gi|304314970|ref|YP_003850117.1| - 0.0044 15.0 0.0 0.0063 14.5 0.0 1.2 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) DeoC PF01791.9 gi|304314971|ref|YP_003850118.1| - 2.6e-12 46.9 5.4 3.2e-12 46.6 5.4 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 gi|304314971|ref|YP_003850118.1| - 0.00015 21.1 1.6 0.00025 20.4 1.6 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NanE PF04131.14 gi|304314971|ref|YP_003850118.1| - 0.00099 18.3 2.3 0.0066 15.7 0.9 2.2 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|304314971|ref|YP_003850118.1| - 0.0084 15.6 1.3 0.035 13.6 0.4 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.17 gi|304314971|ref|YP_003850118.1| - 0.037 13.5 1.4 0.058 12.8 1.4 1.4 1 1 0 1 1 1 0 PcrB family Dus PF01207.17 gi|304314971|ref|YP_003850118.1| - 0.039 13.1 0.5 0.083 12.0 0.5 1.6 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) Phage_TAC_7 PF10109.9 gi|304314971|ref|YP_003850118.1| - 0.32 11.2 1.3 4.7 7.4 0.1 2.5 3 0 0 3 3 3 0 Phage tail assembly chaperone proteins, E, or 41 or 14 Cyclophil_like PF04126.13 gi|304314972|ref|YP_003850119.1| - 6.3e-38 129.3 0.0 7e-38 129.1 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like Cyclophil_like2 PF18050.1 gi|304314972|ref|YP_003850119.1| - 1.8e-09 37.5 0.0 2.2e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Cyclophilin-like family DUF3830 PF12903.7 gi|304314972|ref|YP_003850119.1| - 0.032 13.9 0.0 0.05 13.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3830) Radical_SAM PF04055.21 gi|304314973|ref|YP_003850120.1| - 1.7e-18 67.5 0.8 3.3e-18 66.6 0.2 1.8 3 0 0 3 3 3 1 Radical SAM superfamily CBFD_NFYB_HMF PF00808.23 gi|304314974|ref|YP_003850121.1| - 1e-21 77.0 1.2 1.1e-21 76.8 1.2 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|304314974|ref|YP_003850121.1| - 5.8e-12 46.1 0.1 6.1e-12 46.0 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|304314974|ref|YP_003850121.1| - 4.1e-07 30.1 0.1 4.4e-07 30.0 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TAF PF02969.17 gi|304314974|ref|YP_003850121.1| - 2.5e-05 24.3 0.7 2.7e-05 24.3 0.7 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID_20kDa PF03847.13 gi|304314974|ref|YP_003850121.1| - 4.9e-05 23.8 0.1 6e-05 23.5 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A CENP-S PF15630.6 gi|304314974|ref|YP_003850121.1| - 0.0011 19.3 0.1 0.0013 19.1 0.1 1.3 1 1 0 1 1 1 1 CENP-S protein GnsAB_toxin PF08178.11 gi|304314974|ref|YP_003850121.1| - 0.013 15.4 1.0 0.019 14.9 1.0 1.3 1 0 0 1 1 1 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system Bromo_TP PF07524.13 gi|304314974|ref|YP_003850121.1| - 0.015 15.3 0.0 0.016 15.2 0.0 1.0 1 0 0 1 1 1 0 Bromodomain associated CENP-X PF09415.10 gi|304314974|ref|YP_003850121.1| - 0.052 13.9 0.7 0.058 13.7 0.7 1.1 1 0 0 1 1 1 0 CENP-S associating Centromere protein X Con-6 PF10346.9 gi|304314974|ref|YP_003850121.1| - 0.075 13.1 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Conidiation protein 6 HK97-gp10_like PF04883.12 gi|304314974|ref|YP_003850121.1| - 0.11 13.5 1.8 0.13 13.3 1.8 1.2 1 0 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component Rubrerythrin PF02915.17 gi|304314975|ref|YP_003850122.1| - 6.6e-26 91.3 12.9 6.6e-25 88.1 12.9 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|304314975|ref|YP_003850122.1| - 0.00082 19.3 5.5 0.0015 18.5 5.5 1.6 1 1 0 1 1 1 1 Ferritin-like domain DZR PF12773.7 gi|304314975|ref|YP_003850122.1| - 0.0052 16.8 0.4 0.0087 16.1 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon LD_cluster2 PF18163.1 gi|304314975|ref|YP_003850122.1| - 0.034 13.7 0.1 0.052 13.1 0.1 1.4 1 0 0 1 1 1 0 SLOG cluster2 Ribosomal_L37e PF01907.19 gi|304314975|ref|YP_003850122.1| - 0.053 13.7 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L37e zf_C2H2_13 PF18508.1 gi|304314975|ref|YP_003850122.1| - 0.18 11.4 0.0 0.18 11.4 0.0 2.3 3 0 0 3 3 3 0 Zinc finger domain zinc_ribbon_2 PF13240.6 gi|304314975|ref|YP_003850122.1| - 0.25 11.1 2.4 0.42 10.4 2.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Desulfoferrod_N PF06397.12 gi|304314975|ref|YP_003850122.1| - 1.7 8.3 7.9 0.59 9.8 1.8 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain VATC PF18716.1 gi|304314975|ref|YP_003850122.1| - 1.8 8.5 3.9 28 4.7 3.9 2.2 1 1 0 1 1 1 0 Vms1-associating treble clef domain PAS_9 PF13426.7 gi|304314976|ref|YP_003850123.1| - 4.7e-35 120.0 3.7 1.9e-13 50.6 0.2 3.8 4 0 0 4 4 4 3 PAS domain PAS PF00989.25 gi|304314976|ref|YP_003850123.1| - 1.5e-30 105.5 0.4 9.7e-13 48.1 0.1 3.6 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.12 gi|304314976|ref|YP_003850123.1| - 3.4e-30 104.0 2.9 3.4e-30 104.0 2.9 2.4 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.7 gi|304314976|ref|YP_003850123.1| - 2.6e-23 81.6 0.0 1.7e-08 34.3 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|304314976|ref|YP_003850123.1| - 2.4e-19 69.6 0.0 1.9e-05 24.9 0.0 3.6 3 1 0 3 3 3 3 PAS fold HATPase_c_2 PF13581.6 gi|304314976|ref|YP_003850123.1| - 1.7e-09 37.7 0.0 5.6e-09 36.0 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|304314976|ref|YP_003850123.1| - 5.1e-09 36.6 1.5 2.3e-07 31.3 0.1 3.3 3 1 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|304314976|ref|YP_003850123.1| - 4.1e-08 33.4 0.0 0.0048 17.2 0.0 3.8 3 0 0 3 3 3 2 PAS fold HWE_HK PF07536.14 gi|304314976|ref|YP_003850123.1| - 6.3e-06 26.8 3.5 1.4e-05 25.7 0.9 2.6 2 0 0 2 2 2 1 HWE histidine kinase PAS_7 PF12860.7 gi|304314976|ref|YP_003850123.1| - 8.3e-06 25.9 1.1 0.0034 17.5 0.1 3.3 3 1 0 3 3 3 1 PAS fold Peptidase_U4 PF03419.13 gi|304314976|ref|YP_003850123.1| - 0.0015 17.9 2.6 0.0026 17.1 2.6 1.3 1 0 0 1 1 1 1 Sporulation factor SpoIIGA ECF-ribofla_trS PF07155.12 gi|304314976|ref|YP_003850123.1| - 0.013 15.5 3.6 0.023 14.7 3.6 1.3 1 0 0 1 1 1 0 ECF-type riboflavin transporter, S component DUF4118 PF13493.6 gi|304314976|ref|YP_003850123.1| - 0.022 14.5 13.4 0.06 13.1 13.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4118) Calici_MSP PF05752.11 gi|304314976|ref|YP_003850123.1| - 0.076 12.8 0.8 0.87 9.4 0.0 2.3 2 0 0 2 2 2 0 Calicivirus minor structural protein Ceramidase PF05875.12 gi|304314976|ref|YP_003850123.1| - 0.21 11.0 3.7 0.35 10.3 3.7 1.2 1 0 0 1 1 1 0 Ceramidase UPF0004 PF00919.20 gi|304314978|ref|YP_003850125.1| - 2.4e-24 85.2 0.0 4.4e-24 84.4 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|304314978|ref|YP_003850125.1| - 1.8e-19 70.7 0.1 3.8e-19 69.7 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.20 gi|304314978|ref|YP_003850125.1| - 6.7e-09 35.6 0.2 1.2e-08 34.8 0.2 1.5 1 0 0 1 1 1 1 TRAM domain PCMT PF01135.19 gi|304314979|ref|YP_003850126.1| - 1.9e-72 243.4 0.0 2.3e-72 243.1 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|304314979|ref|YP_003850126.1| - 2e-07 30.9 0.0 3.1e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|304314979|ref|YP_003850126.1| - 4.9e-07 29.7 0.0 7.1e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.20 gi|304314979|ref|YP_003850126.1| - 6.7e-06 25.4 0.0 8.5e-06 25.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|304314979|ref|YP_003850126.1| - 1.2e-05 25.9 0.0 2e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|304314979|ref|YP_003850126.1| - 0.00039 19.6 0.1 0.00054 19.1 0.1 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_3 PF01596.17 gi|304314979|ref|YP_003850126.1| - 0.0011 18.2 0.0 0.0016 17.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|304314979|ref|YP_003850126.1| - 0.0076 17.3 0.0 0.012 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|304314979|ref|YP_003850126.1| - 0.0098 15.2 0.0 0.014 14.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|304314979|ref|YP_003850126.1| - 0.011 15.3 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F CMAS PF02353.20 gi|304314979|ref|YP_003850126.1| - 0.025 13.9 0.0 0.035 13.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|304314979|ref|YP_003850126.1| - 0.056 13.3 0.0 0.083 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|304314979|ref|YP_003850126.1| - 0.072 13.1 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain zinc_ribbon_5 PF13719.6 gi|304314980|ref|YP_003850127.1| - 0.00072 19.3 1.1 0.83 9.5 0.0 2.6 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|304314980|ref|YP_003850127.1| - 0.00096 18.6 0.6 0.8 9.3 0.0 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|304314980|ref|YP_003850127.1| - 0.0081 16.5 0.1 0.013 15.9 0.1 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar Rad9_Rad53_bind PF08605.10 gi|304314980|ref|YP_003850127.1| - 0.01 16.0 0.3 0.86 9.8 0.1 2.2 1 1 1 2 2 2 0 Fungal Rad9-like Rad53-binding Zn-ribbon_8 PF09723.10 gi|304314980|ref|YP_003850127.1| - 0.022 14.9 0.8 7.3 6.8 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Ogr_Delta PF04606.12 gi|304314980|ref|YP_003850127.1| - 0.026 14.5 0.1 0.056 13.4 0.1 1.5 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-C2H2 PF00096.26 gi|304314980|ref|YP_003850127.1| - 0.026 15.0 0.4 6.5 7.4 0.0 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.9 gi|304314980|ref|YP_003850127.1| - 0.036 14.1 1.6 0.16 12.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ZPR1 PF03367.13 gi|304314980|ref|YP_003850127.1| - 0.051 13.4 2.1 2.5 7.9 0.4 2.4 1 1 2 3 3 3 0 ZPR1 zinc-finger domain zf-C2H2_4 PF13894.6 gi|304314980|ref|YP_003850127.1| - 0.15 13.0 0.8 24 6.1 0.1 2.7 2 0 0 2 2 2 0 C2H2-type zinc finger zf-RRN7 PF11781.8 gi|304314980|ref|YP_003850127.1| - 0.17 11.6 0.6 2.2 8.0 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DNA_ligase_ZBD PF03119.16 gi|304314980|ref|YP_003850127.1| - 0.2 11.7 0.1 0.2 11.7 0.1 1.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain CcmF_C PF16327.5 gi|304314980|ref|YP_003850127.1| - 0.24 10.6 0.0 0.3 10.3 0.0 1.1 1 0 0 1 1 1 0 Cytochrome c-type biogenesis protein CcmF C-terminal Aconitase_C PF00694.19 gi|304314981|ref|YP_003850128.1| - 4.5e-21 75.6 0.1 1.7e-19 70.5 0.4 2.1 1 1 1 2 2 2 2 Aconitase C-terminal domain GHMP_kinases_C PF08544.13 gi|304314982|ref|YP_003850129.1| - 3.8e-09 36.8 0.0 8e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|304314982|ref|YP_003850129.1| - 3.3e-06 27.2 2.3 6.9e-06 26.2 2.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain Radical_SAM PF04055.21 gi|304314983|ref|YP_003850130.1| - 1.2e-24 87.6 0.5 7.2e-23 81.8 0.0 2.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|304314983|ref|YP_003850130.1| - 1.1e-07 32.2 0.2 6.4e-07 29.7 0.0 2.0 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|304314983|ref|YP_003850130.1| - 5.7e-07 29.7 0.1 3.2e-06 27.3 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|304314983|ref|YP_003850130.1| - 0.12 11.8 0.0 0.28 10.6 0.0 1.7 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel zf-Mss51 PF13824.6 gi|304314983|ref|YP_003850130.1| - 2.8 8.1 5.1 6.2 7.0 0.3 2.9 3 0 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 CarS-like PF01864.17 gi|304314984|ref|YP_003850131.1| - 6.3e-74 247.7 15.6 7.3e-74 247.5 15.6 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|304314984|ref|YP_003850131.1| - 0.0052 16.6 5.6 0.0052 16.6 5.6 2.2 1 1 1 2 2 2 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.6 gi|304314984|ref|YP_003850131.1| - 0.16 11.8 17.5 0.12 12.1 12.7 2.7 2 1 1 3 3 3 0 YMGG-like Gly-zipper E2 PF08199.11 gi|304314984|ref|YP_003850131.1| - 0.42 10.6 0.1 0.42 10.6 0.1 1.9 2 0 0 2 2 2 0 Bacteriophage E2-like protein Hydantoinase_A PF01968.18 gi|304314986|ref|YP_003850133.1| - 5.4e-28 98.1 1.7 1.8e-25 89.8 0.5 2.1 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase MutL PF13941.6 gi|304314986|ref|YP_003850133.1| - 7.5e-05 21.5 0.6 0.0029 16.3 0.4 2.3 2 0 0 2 2 2 2 MutL protein FtsA PF14450.6 gi|304314986|ref|YP_003850133.1| - 0.13 12.7 0.3 22 5.5 0.0 3.0 2 1 0 2 2 2 0 Cell division protein FtsA Actin PF00022.19 gi|304314986|ref|YP_003850133.1| - 0.19 10.3 0.2 0.37 9.4 0.1 1.5 1 1 0 1 1 1 0 Actin Hydant_A_N PF05378.13 gi|304314986|ref|YP_003850133.1| - 0.39 10.4 6.3 2.7 7.7 0.3 3.0 3 1 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region ATP-grasp_3 PF02655.14 gi|304314987|ref|YP_003850134.1| - 8.1e-45 152.8 0.0 1.1e-44 152.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|304314987|ref|YP_003850134.1| - 6.5e-06 26.3 0.0 1.4e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 pre ATP-grasp 3 domain GARS_A PF01071.19 gi|304314987|ref|YP_003850134.1| - 0.00014 21.7 0.0 0.00048 20.0 0.0 1.8 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_ST PF14397.6 gi|304314987|ref|YP_003850134.1| - 0.0005 19.4 0.0 0.32 10.2 0.0 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_Ter PF15632.6 gi|304314987|ref|YP_003850134.1| - 0.00055 19.7 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon UDPG_MGDP_dh_N PF03721.14 gi|304314988|ref|YP_003850135.1| - 8.8e-57 191.7 0.2 1.6e-56 190.9 0.2 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|304314988|ref|YP_003850135.1| - 9.8e-31 105.8 0.0 1.9e-30 104.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|304314988|ref|YP_003850135.1| - 9.5e-17 61.3 0.0 2.9e-16 59.8 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 2-Hacid_dh_C PF02826.19 gi|304314988|ref|YP_003850135.1| - 1.4e-06 27.8 0.0 0.012 15.0 0.0 3.0 2 1 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|304314988|ref|YP_003850135.1| - 4e-06 27.1 0.2 1.9e-05 24.9 0.2 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|304314988|ref|YP_003850135.1| - 2.3e-05 24.4 0.1 6.5e-05 22.9 0.1 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|304314988|ref|YP_003850135.1| - 2.6e-05 24.2 0.4 8.8e-05 22.5 0.1 1.9 1 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TylF PF05711.11 gi|304314988|ref|YP_003850135.1| - 0.0088 15.3 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Macrocin-O-methyltransferase (TylF) XdhC_C PF13478.6 gi|304314988|ref|YP_003850135.1| - 0.017 15.7 0.1 0.1 13.1 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain F420_oxidored PF03807.17 gi|304314988|ref|YP_003850135.1| - 0.025 15.2 1.1 0.83 10.3 0.5 3.1 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_11 PF14833.6 gi|304314988|ref|YP_003850135.1| - 0.043 14.0 0.1 0.46 10.7 0.1 2.3 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ApbA PF02558.16 gi|304314988|ref|YP_003850135.1| - 0.067 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Methyltransf_25 PF13649.6 gi|304314988|ref|YP_003850135.1| - 0.12 13.0 0.0 10 6.9 0.0 3.1 3 0 0 3 3 3 0 Methyltransferase domain Epimerase_2 PF02350.19 gi|304314989|ref|YP_003850136.1| - 1.4e-122 408.9 0.0 1.8e-122 408.6 0.0 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.6 gi|304314989|ref|YP_003850136.1| - 0.024 14.7 0.0 0.043 13.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like MGDG_synth PF06925.11 gi|304314989|ref|YP_003850136.1| - 0.13 12.4 0.0 2.3 8.3 0.0 2.4 2 0 0 2 2 2 0 Monogalactosyldiacylglycerol (MGDG) synthase DUF460 PF04312.13 gi|304314990|ref|YP_003850137.1| - 3.2e-25 88.5 1.6 5.2e-25 87.8 0.1 2.2 2 1 1 3 3 3 1 Protein of unknown function (DUF460) TMF_DNA_bd PF12329.8 gi|304314990|ref|YP_003850137.1| - 0.0038 17.2 6.5 0.0038 17.2 6.5 4.0 4 0 0 4 4 4 1 TATA element modulatory factor 1 DNA binding Hpr_kinase_N PF02603.16 gi|304314990|ref|YP_003850137.1| - 0.036 14.1 0.0 7.7 6.6 0.0 2.7 2 0 0 2 2 2 0 HPr Serine kinase N terminus SlyX PF04102.12 gi|304314990|ref|YP_003850137.1| - 0.058 14.0 1.9 0.058 14.0 1.9 3.5 4 0 0 4 4 4 0 SlyX DivIC PF04977.15 gi|304314990|ref|YP_003850137.1| - 0.06 13.1 18.9 0.075 12.8 3.8 3.6 3 0 0 3 3 3 0 Septum formation initiator DUF4250 PF14056.6 gi|304314990|ref|YP_003850137.1| - 0.27 11.2 4.8 0.12 12.3 1.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) HAUS-augmin3 PF14932.6 gi|304314990|ref|YP_003850137.1| - 0.32 10.5 12.7 0.052 13.1 8.5 1.8 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 DHHA1 PF02272.19 gi|304314990|ref|YP_003850137.1| - 0.41 11.1 0.0 0.41 11.1 0.0 3.5 3 1 1 4 4 4 0 DHHA1 domain MMTV_SAg PF01054.17 gi|304314990|ref|YP_003850137.1| - 0.55 9.7 4.7 0.55 9.7 3.1 1.7 1 1 0 1 1 1 0 Mouse mammary tumour virus superantigen Macoilin PF09726.9 gi|304314990|ref|YP_003850137.1| - 0.64 8.5 17.9 0.017 13.8 9.7 2.0 2 0 0 2 2 2 0 Macoilin family M PF02370.16 gi|304314990|ref|YP_003850137.1| - 3.4 8.5 8.7 1.1 10.0 3.2 3.3 3 0 0 3 3 3 0 M protein repeat PseudoU_synth_1 PF01416.20 gi|304314991|ref|YP_003850138.1| - 4.9e-31 107.4 0.0 6.8e-24 84.4 0.0 2.4 3 0 0 3 3 3 2 tRNA pseudouridine synthase EamA PF00892.20 gi|304314992|ref|YP_003850139.1| - 1.6e-51 174.1 44.4 1.1e-32 113.0 13.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family V4R PF02830.18 gi|304314993|ref|YP_003850140.1| - 4.9e-20 71.3 0.4 7.7e-20 70.7 0.4 1.3 1 0 0 1 1 1 1 V4R domain DUF3626 PF12294.8 gi|304314993|ref|YP_003850140.1| - 0.17 10.9 0.0 0.22 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3626) His_biosynth PF00977.21 gi|304314994|ref|YP_003850141.1| - 7.3e-77 257.9 1.1 8.3e-77 257.7 1.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|304314994|ref|YP_003850141.1| - 1.2e-09 37.8 0.1 0.00012 21.3 0.1 2.4 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|304314994|ref|YP_003850141.1| - 4e-09 36.1 0.2 0.00029 20.2 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|304314994|ref|YP_003850141.1| - 1.5e-06 27.8 0.0 5.6e-05 22.7 0.0 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase Trp_syntA PF00290.20 gi|304314994|ref|YP_003850141.1| - 3.1e-06 26.2 0.3 0.0041 16.0 0.1 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain PcrB PF01884.17 gi|304314994|ref|YP_003850141.1| - 5.1e-06 26.1 0.5 0.0067 15.9 0.1 2.2 2 0 0 2 2 2 2 PcrB family DHO_dh PF01180.21 gi|304314994|ref|YP_003850141.1| - 1.5e-05 24.4 0.2 0.00055 19.2 0.1 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|304314994|ref|YP_003850141.1| - 3.7e-05 22.9 0.2 0.19 10.7 0.0 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|304314994|ref|YP_003850141.1| - 0.00014 21.3 0.2 0.24 10.8 0.0 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|304314994|ref|YP_003850141.1| - 0.00016 21.1 0.3 0.13 11.6 0.0 2.8 2 1 1 3 3 3 2 Thiamine monophosphate synthase PEP_mutase PF13714.6 gi|304314994|ref|YP_003850141.1| - 0.0002 20.9 0.0 0.13 11.7 0.0 2.1 2 0 0 2 2 2 2 Phosphoenolpyruvate phosphomutase IGPS PF00218.21 gi|304314994|ref|YP_003850141.1| - 0.00086 18.5 0.0 0.009 15.2 0.0 2.2 2 1 1 3 3 3 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|304314994|ref|YP_003850141.1| - 0.0034 16.5 0.3 0.34 9.9 0.1 2.1 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.14 gi|304314994|ref|YP_003850141.1| - 0.0051 16.0 0.1 0.34 10.1 0.0 2.3 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.12 gi|304314994|ref|YP_003850141.1| - 0.0057 15.9 0.1 0.016 14.4 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF561) GRDA PF04723.14 gi|304314994|ref|YP_003850141.1| - 0.077 12.8 0.1 6.1 6.6 0.0 2.4 2 0 0 2 2 2 0 Glycine reductase complex selenoprotein A DeoC PF01791.9 gi|304314994|ref|YP_003850141.1| - 0.11 12.1 0.0 0.56 9.8 0.0 1.9 2 0 0 2 2 2 0 DeoC/LacD family aldolase CTP_transf_like PF01467.26 gi|304314995|ref|YP_003850142.1| - 4.5e-18 65.8 0.0 5.5e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|304314995|ref|YP_003850142.1| - 5.6e-05 23.1 0.1 0.00027 20.8 0.1 2.0 1 1 0 1 1 1 1 FAD synthetase SAP PF02037.27 gi|304314995|ref|YP_003850142.1| - 0.03 14.1 0.1 0.056 13.2 0.1 1.5 1 0 0 1 1 1 0 SAP domain Lactamase_B_3 PF13483.6 gi|304314995|ref|YP_003850142.1| - 0.089 12.7 0.1 0.69 9.8 0.1 2.0 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Transglut_core PF01841.19 gi|304314996|ref|YP_003850143.1| - 9.4e-25 87.2 0.7 9.4e-25 87.2 0.7 2.4 2 1 1 3 3 3 1 Transglutaminase-like superfamily Peptidase_C71 PF12386.8 gi|304314996|ref|YP_003850143.1| - 3.5e-08 33.2 1.3 3.5e-08 33.2 1.3 2.6 2 1 1 3 3 3 1 Pseudomurein endo-isopeptidase Pei DUF553 PF04473.12 gi|304314996|ref|YP_003850143.1| - 0.00013 21.5 0.2 0.34 10.4 0.0 2.7 1 1 1 2 2 2 2 Transglutaminase-like domain Semialdhyde_dh PF01118.24 gi|304314997|ref|YP_003850144.1| - 1.6e-35 122.2 0.0 2.3e-35 121.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|304314997|ref|YP_003850144.1| - 1.8e-29 103.1 0.0 2.7e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|304314997|ref|YP_003850144.1| - 0.00037 20.6 0.0 0.0007 19.7 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|304314997|ref|YP_003850144.1| - 0.00066 20.5 0.0 0.0013 19.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Epimerase PF01370.21 gi|304314997|ref|YP_003850144.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_3 PF03447.16 gi|304314997|ref|YP_003850144.1| - 0.037 14.7 0.0 0.068 13.8 0.0 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain CoA_binding_2 PF13380.6 gi|304314997|ref|YP_003850144.1| - 0.045 14.2 0.0 0.22 12.0 0.0 1.9 2 0 0 2 2 2 0 CoA binding domain Flavodoxin_3 PF12641.7 gi|304314998|ref|YP_003850145.1| - 1.3e-09 37.9 0.0 2.9e-05 23.8 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_4 PF12682.7 gi|304314998|ref|YP_003850145.1| - 2.3e-09 37.2 0.0 7.5e-09 35.5 0.0 1.7 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_1 PF00258.25 gi|304314998|ref|YP_003850145.1| - 1.6e-08 34.8 0.1 3.8e-06 27.2 0.1 2.2 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.7 gi|304314998|ref|YP_003850145.1| - 2.3e-08 34.4 0.0 0.0036 17.6 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin domain FMN_red PF03358.15 gi|304314998|ref|YP_003850145.1| - 3.8e-06 26.7 0.0 4.9e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|304314998|ref|YP_003850145.1| - 0.076 12.7 0.0 0.092 12.4 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin-like fold LPD26 PF18842.1 gi|304314998|ref|YP_003850145.1| - 0.14 12.1 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Large polyvalent protein associated domain 26 SecD_SecF PF02355.16 gi|304314999|ref|YP_003850146.1| - 2.7e-45 154.1 14.0 4.5e-45 153.4 14.0 1.3 1 0 0 1 1 1 1 Protein export membrane protein Patched PF02460.18 gi|304314999|ref|YP_003850146.1| - 7.9e-08 30.9 12.8 1e-07 30.5 12.8 1.1 1 0 0 1 1 1 1 Patched family Sec_GG PF07549.14 gi|304314999|ref|YP_003850146.1| - 0.007 15.8 0.3 0.026 14.0 0.0 2.2 2 0 0 2 2 2 1 SecD/SecF GG Motif YpmT PF17431.2 gi|304314999|ref|YP_003850146.1| - 0.067 13.2 0.1 0.21 11.7 0.1 1.8 1 0 0 1 1 1 0 Uncharacterized YmpT-like PRA1 PF03208.19 gi|304314999|ref|YP_003850146.1| - 0.99 9.0 10.2 4 7.1 6.6 2.6 2 1 0 2 2 2 0 PRA1 family protein SecD_SecF PF02355.16 gi|304315000|ref|YP_003850147.1| - 3.1e-15 56.1 11.3 5.7e-15 55.2 11.3 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|304315000|ref|YP_003850147.1| - 2.2e-08 33.4 12.5 4.1e-08 32.5 12.5 1.4 1 0 0 1 1 1 1 MMPL family Sec_GG PF07549.14 gi|304315000|ref|YP_003850147.1| - 1.2e-06 27.7 0.0 2.6e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif PyrI PF01948.18 gi|304315001|ref|YP_003850148.1| - 3.4e-35 120.2 1.9 4.4e-35 119.8 1.9 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|304315001|ref|YP_003850148.1| - 4.3e-20 71.3 2.7 6.9e-20 70.7 2.7 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain PMBR PF09373.10 gi|304315002|ref|YP_003850149.1| - 6e-15 54.6 0.9 1.6e-07 31.2 0.1 3.0 3 0 0 3 3 3 2 Pseudomurein-binding repeat AstE_AspA PF04952.14 gi|304315003|ref|YP_003850150.1| - 2.2e-10 40.1 0.0 1.4e-09 37.5 0.0 1.9 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.24 gi|304315003|ref|YP_003850150.1| - 0.083 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Zinc carboxypeptidase GMC_oxred_N PF00732.19 gi|304315004|ref|YP_003850151.1| - 4e-18 65.8 0.1 3.4e-16 59.5 0.0 2.9 2 1 0 2 2 2 1 GMC oxidoreductase GMC_oxred_C PF05199.13 gi|304315004|ref|YP_003850151.1| - 4.5e-12 46.7 0.0 7.2e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 GMC oxidoreductase DAO PF01266.24 gi|304315004|ref|YP_003850151.1| - 5.7e-10 39.3 4.4 4.4e-09 36.4 4.4 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|304315004|ref|YP_003850151.1| - 3.6e-07 29.6 3.5 0.0023 17.1 0.1 2.8 2 1 1 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|304315004|ref|YP_003850151.1| - 4.4e-06 26.1 0.2 0.00052 19.3 0.0 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|304315004|ref|YP_003850151.1| - 1.1e-05 25.6 0.9 4.4e-05 23.6 0.3 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|304315004|ref|YP_003850151.1| - 0.00057 19.2 0.7 0.00057 19.2 0.7 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|304315004|ref|YP_003850151.1| - 0.0026 17.1 0.0 0.25 10.6 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|304315004|ref|YP_003850151.1| - 0.0027 18.2 0.2 0.0088 16.6 0.2 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|304315004|ref|YP_003850151.1| - 0.0036 16.5 0.0 0.37 9.8 0.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A ApbA PF02558.16 gi|304315004|ref|YP_003850151.1| - 0.0036 17.0 0.0 0.0065 16.1 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Fer4_10 PF13237.6 gi|304315004|ref|YP_003850151.1| - 0.0043 17.1 0.1 0.009 16.1 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304315004|ref|YP_003850151.1| - 0.019 15.0 1.2 0.041 14.0 1.2 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain HI0933_like PF03486.14 gi|304315004|ref|YP_003850151.1| - 0.034 12.8 0.3 0.38 9.4 0.1 2.2 2 0 0 2 2 2 0 HI0933-like protein NAD_binding_9 PF13454.6 gi|304315004|ref|YP_003850151.1| - 0.043 13.8 0.8 8 6.4 0.1 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding TrkA_N PF02254.18 gi|304315004|ref|YP_003850151.1| - 0.058 13.7 1.1 0.2 11.9 0.0 2.4 3 0 0 3 3 3 0 TrkA-N domain CT_C_D PF02682.16 gi|304315004|ref|YP_003850151.1| - 0.071 12.8 0.2 0.12 12.1 0.2 1.3 1 0 0 1 1 1 0 Carboxyltransferase domain, subdomain C and D Thi4 PF01946.17 gi|304315004|ref|YP_003850151.1| - 0.089 12.0 0.4 0.22 10.7 0.2 1.7 2 0 0 2 2 2 0 Thi4 family Lycopene_cycl PF05834.12 gi|304315004|ref|YP_003850151.1| - 0.16 11.0 0.0 0.27 10.3 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4 PF00037.27 gi|304315005|ref|YP_003850152.1| - 2.8e-15 55.4 17.3 4.7e-08 32.5 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304315005|ref|YP_003850152.1| - 9e-14 50.9 14.5 2.5e-07 30.5 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304315005|ref|YP_003850152.1| - 7.7e-13 48.8 5.2 9.6e-06 26.1 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304315005|ref|YP_003850152.1| - 2.9e-11 42.7 12.1 2.8e-05 23.9 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304315005|ref|YP_003850152.1| - 2.3e-10 40.4 28.8 1.3e-08 34.8 14.9 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304315005|ref|YP_003850152.1| - 6.1e-10 39.1 8.8 2.1e-05 24.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304315005|ref|YP_003850152.1| - 1.1e-08 35.1 13.0 0.00011 22.3 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain NIL PF09383.10 gi|304315005|ref|YP_003850152.1| - 7.1e-08 32.2 0.0 1e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_16 PF13484.6 gi|304315005|ref|YP_003850152.1| - 2.3e-07 31.6 11.6 0.0013 19.6 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|304315005|ref|YP_003850152.1| - 8.4e-07 29.3 6.7 0.0056 17.1 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304315005|ref|YP_003850152.1| - 1e-06 28.7 17.7 0.0042 17.5 4.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|304315005|ref|YP_003850152.1| - 6e-06 26.7 11.6 0.0032 18.0 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|304315005|ref|YP_003850152.1| - 4.9e-05 23.8 8.7 0.038 14.5 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304315005|ref|YP_003850152.1| - 0.0001 23.0 18.7 0.0091 16.9 4.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|304315005|ref|YP_003850152.1| - 0.00053 20.2 13.5 0.0097 16.1 13.8 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|304315005|ref|YP_003850152.1| - 0.0058 17.4 15.2 0.21 12.4 3.4 2.8 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|304315005|ref|YP_003850152.1| - 0.009 16.8 13.5 0.34 11.8 2.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain HcyBio PF01837.16 gi|304315006|ref|YP_003850153.1| - 6.3e-156 518.6 0.2 8.1e-156 518.2 0.2 1.1 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|304315006|ref|YP_003850153.1| - 1.4e-26 92.7 9.4 7.1e-13 48.8 0.6 2.8 3 0 0 3 3 3 2 CBS domain PmbA_TldD PF01523.16 gi|304315007|ref|YP_003850154.1| - 1.8e-64 218.3 1.8 2.3e-64 218.0 1.8 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase AMMECR1 PF01871.17 gi|304315008|ref|YP_003850155.1| - 1.4e-55 187.4 0.0 1.6e-55 187.2 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 NOG1_N PF17835.1 gi|304315009|ref|YP_003850156.1| - 6.2e-42 143.3 0.1 1.1e-41 142.4 0.1 1.4 1 0 0 1 1 1 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|304315009|ref|YP_003850156.1| - 1.1e-22 80.3 0.0 1.9e-22 79.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|304315009|ref|YP_003850156.1| - 1.2e-22 79.4 0.1 2e-22 78.7 0.1 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|304315009|ref|YP_003850156.1| - 1.4e-14 53.9 0.1 2.1e-14 53.4 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|304315009|ref|YP_003850156.1| - 9.5e-06 25.4 0.1 2.7e-05 23.9 0.1 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AIG1 PF04548.16 gi|304315009|ref|YP_003850156.1| - 3e-05 23.4 0.0 4.2e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 AIG1 family RsgA_GTPase PF03193.16 gi|304315009|ref|YP_003850156.1| - 3.2e-05 23.9 0.1 0.21 11.5 0.0 2.8 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|304315009|ref|YP_003850156.1| - 7.1e-05 22.4 0.0 0.004 16.7 0.0 2.6 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|304315009|ref|YP_003850156.1| - 0.00075 19.6 0.3 0.12 12.4 0.1 2.5 1 1 1 2 2 2 1 Dynamin family Arf PF00025.21 gi|304315009|ref|YP_003850156.1| - 0.009 15.5 0.8 0.16 11.4 0.3 2.9 2 1 0 2 2 2 1 ADP-ribosylation factor family cobW PF02492.19 gi|304315009|ref|YP_003850156.1| - 0.036 13.6 0.1 2.2 7.8 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|304315009|ref|YP_003850156.1| - 0.049 12.6 0.2 2.6 7.0 0.0 2.9 3 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|304315009|ref|YP_003850156.1| - 0.082 12.7 0.0 0.96 9.2 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MMR_HSR1_Xtn PF16897.5 gi|304315009|ref|YP_003850156.1| - 0.095 12.7 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain HSP20 PF00011.21 gi|304315010|ref|YP_003850157.1| - 5.7e-18 64.9 5.6 5.7e-18 64.9 5.6 1.4 2 0 0 2 2 2 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|304315010|ref|YP_003850157.1| - 8.4e-13 47.7 0.3 1.6e-12 46.8 0.3 1.5 1 1 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|304315010|ref|YP_003850157.1| - 1.7e-05 25.7 4.5 2.1e-05 25.4 3.3 1.8 1 1 1 2 2 2 1 CS domain FKBP26_C PF18046.1 gi|304315010|ref|YP_003850157.1| - 0.0003 20.8 4.9 0.088 12.9 0.6 2.8 2 1 0 2 2 2 2 FKBP26_C-terminal Enterotoxin_b PF01376.18 gi|304315010|ref|YP_003850157.1| - 0.018 15.2 1.7 0.019 15.1 0.5 1.7 2 0 0 2 2 2 0 Heat-labile enterotoxin beta chain PRKG1_interact PF15898.5 gi|304315010|ref|YP_003850157.1| - 1.5 9.7 9.5 78 4.3 9.5 2.2 1 1 0 1 1 1 0 cGMP-dependent protein kinase interacting domain SIS PF01380.22 gi|304315011|ref|YP_003850158.1| - 8.6e-23 80.6 0.1 1.2e-18 67.2 0.1 2.1 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 gi|304315011|ref|YP_003850158.1| - 0.0012 18.8 0.0 0.01 15.8 0.0 2.2 1 1 1 2 2 2 1 SIS domain bact-PGI_C PF10432.9 gi|304315011|ref|YP_003850158.1| - 0.0077 16.3 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain DUF2529 PF10740.9 gi|304315011|ref|YP_003850158.1| - 0.022 14.4 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2529) YjeF_N PF03853.15 gi|304315011|ref|YP_003850158.1| - 0.12 12.3 0.0 9.4 6.1 0.0 3.2 3 1 1 4 4 4 0 YjeF-related protein N-terminus ThiP_synth PF10120.9 gi|304315012|ref|YP_003850159.1| - 1.4e-62 210.1 0.1 1.6e-62 210.0 0.1 1.0 1 0 0 1 1 1 1 Thiamine-phosphate synthase DUF2124 PF09897.9 gi|304315013|ref|YP_003850160.1| - 5.6e-48 162.4 0.0 6.3e-48 162.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Phage_int_SAM_6 PF18644.1 gi|304315013|ref|YP_003850160.1| - 0.23 11.5 0.0 0.31 11.1 0.0 1.2 1 0 0 1 1 1 0 Phage integrase SAM-like domain DUF447 PF04289.12 gi|304315014|ref|YP_003850161.1| - 5.3e-45 153.3 0.1 6.2e-45 153.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Adenine_deam_C PF13382.6 gi|304315015|ref|YP_003850162.1| - 5.9e-61 204.7 0.0 1e-60 203.9 0.0 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|304315015|ref|YP_003850162.1| - 2.8e-44 151.9 1.0 1.1e-42 146.6 1.0 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|304315015|ref|YP_003850162.1| - 2.3e-07 30.7 1.8 0.00078 19.0 0.0 2.5 2 0 0 2 2 2 2 Amidohydrolase family Saccharop_dh_N PF04455.12 gi|304315016|ref|YP_003850163.1| - 2.1e-38 130.8 0.0 7.1e-38 129.1 0.0 1.9 2 0 0 2 2 2 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|304315016|ref|YP_003850163.1| - 0.001 18.8 0.1 0.0019 17.9 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|304315016|ref|YP_003850163.1| - 0.0017 17.7 0.9 0.029 13.6 0.0 2.6 2 1 1 3 3 3 1 Deoxyhypusine synthase Arginase PF00491.21 gi|304315017|ref|YP_003850164.1| - 4.8e-65 219.8 0.1 6.3e-65 219.4 0.1 1.0 1 0 0 1 1 1 1 Arginase family UPF0489 PF12640.7 gi|304315017|ref|YP_003850164.1| - 0.046 13.9 0.1 0.07 13.4 0.1 1.2 1 0 0 1 1 1 0 UPF0489 domain eIF-5a PF01287.20 gi|304315018|ref|YP_003850165.1| - 1.9e-07 31.1 0.2 3.1e-07 30.4 0.2 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP PF01132.20 gi|304315018|ref|YP_003850165.1| - 0.06 13.4 0.0 0.097 12.7 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain PvlArgDC PF01862.16 gi|304315019|ref|YP_003850166.1| - 2.1e-37 128.5 0.1 2.3e-37 128.3 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Inositol_P PF00459.25 gi|304315020|ref|YP_003850167.1| - 3.6e-32 111.9 0.0 4.6e-32 111.6 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|304315020|ref|YP_003850167.1| - 3.2e-05 23.5 0.0 5.4e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain UXS1_N PF11803.8 gi|304315020|ref|YP_003850167.1| - 0.17 12.3 0.1 2.5 8.5 0.0 2.5 2 0 0 2 2 2 0 UDP-glucuronate decarboxylase N-terminal NAD_kinase PF01513.21 gi|304315021|ref|YP_003850168.1| - 1.1e-73 248.0 0.7 3.5e-73 246.4 0.7 1.7 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|304315021|ref|YP_003850168.1| - 0.00064 19.3 0.3 0.0016 18.1 0.1 1.7 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain PK_C PF02887.16 gi|304315021|ref|YP_003850168.1| - 0.12 12.6 0.0 0.27 11.5 0.0 1.6 1 1 0 1 1 1 0 Pyruvate kinase, alpha/beta domain Mur_ligase_M PF08245.12 gi|304315022|ref|YP_003850169.1| - 1.8e-06 28.1 0.0 3.2e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Porphobil_deam PF01379.20 gi|304315023|ref|YP_003850170.1| - 1.8e-68 230.1 0.0 2.5e-68 229.6 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|304315023|ref|YP_003850170.1| - 2.3e-21 76.0 0.6 4.3e-21 75.1 0.6 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain GFO_IDH_MocA PF01408.22 gi|304315024|ref|YP_003850171.1| - 4.9e-31 108.1 0.2 9e-31 107.2 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|304315024|ref|YP_003850171.1| - 2.3e-10 40.5 0.0 7.4e-10 38.8 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.15 gi|304315024|ref|YP_003850171.1| - 0.00057 20.1 0.2 0.001 19.3 0.2 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|304315024|ref|YP_003850171.1| - 0.0082 16.7 0.0 0.018 15.6 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DUF4798 PF16055.5 gi|304315024|ref|YP_003850171.1| - 0.049 13.9 0.1 0.099 12.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4798) 2-Hacid_dh_C PF02826.19 gi|304315024|ref|YP_003850171.1| - 0.052 12.9 0.1 0.082 12.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|304315024|ref|YP_003850171.1| - 0.08 13.6 0.1 0.15 12.7 0.1 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Pribosyltran PF00156.27 gi|304315025|ref|YP_003850172.1| - 1.4e-19 70.2 2.1 2.2e-19 69.5 2.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|304315025|ref|YP_003850172.1| - 0.00071 19.1 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|304315025|ref|YP_003850172.1| - 0.0027 17.2 0.1 0.004 16.7 0.1 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_11 PF08279.12 gi|304315025|ref|YP_003850172.1| - 0.005 16.7 0.2 0.028 14.3 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|304315025|ref|YP_003850172.1| - 0.0057 16.4 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain FeThRed_A PF02941.15 gi|304315025|ref|YP_003850172.1| - 0.013 15.6 0.1 0.029 14.5 0.1 1.5 1 0 0 1 1 1 0 Ferredoxin thioredoxin reductase variable alpha chain Nucleo_LEF-12 PF06256.11 gi|304315025|ref|YP_003850172.1| - 0.017 14.9 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus LEF-12 protein PDZ_6 PF17820.1 gi|304315025|ref|YP_003850172.1| - 0.046 13.6 0.8 2.8 7.9 0.2 2.6 3 0 0 3 3 3 0 PDZ domain HTH_7 PF02796.15 gi|304315025|ref|YP_003850172.1| - 0.06 13.4 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Pribosyl_synth PF14572.6 gi|304315025|ref|YP_003850172.1| - 0.087 12.9 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain BNR_6 PF15899.5 gi|304315025|ref|YP_003850172.1| - 0.1 12.7 0.0 4.8 7.5 0.0 2.6 2 0 0 2 2 2 0 BNR-Asp box repeat GerE PF00196.19 gi|304315025|ref|YP_003850172.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF1918 PF08940.11 gi|304315025|ref|YP_003850172.1| - 0.14 11.8 0.4 0.26 10.9 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) HTH_17 PF12728.7 gi|304315025|ref|YP_003850172.1| - 0.15 12.3 0.0 0.48 10.7 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain UbiA PF01040.18 gi|304315026|ref|YP_003850173.1| - 9.1e-15 54.6 12.6 1.3e-14 54.2 12.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Colicin_V PF02674.16 gi|304315026|ref|YP_003850173.1| - 3.2 7.7 12.4 0.23 11.4 4.7 2.4 2 0 0 2 2 2 0 Colicin V production protein eRF1_2 PF03464.15 gi|304315027|ref|YP_003850174.1| - 2.1e-48 164.0 0.9 2.6e-48 163.7 0.0 1.6 2 0 0 2 2 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|304315027|ref|YP_003850174.1| - 2.5e-36 124.6 0.1 6.1e-36 123.3 0.1 1.7 1 0 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|304315027|ref|YP_003850174.1| - 3.2e-18 66.3 0.0 7.3e-18 65.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|304315027|ref|YP_003850174.1| - 5.9e-15 55.4 0.0 9.9e-15 54.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|304315027|ref|YP_003850174.1| - 2.1e-14 54.0 0.0 6.6e-14 52.3 0.0 1.9 2 0 0 2 2 1 1 Actinobacteria/chloroflexi VLRF1 release factor Zn-ribbon_8 PF09723.10 gi|304315027|ref|YP_003850174.1| - 0.00014 21.9 1.9 0.00014 21.9 1.9 2.5 2 0 0 2 2 2 1 Zinc ribbon domain baeRF_family12 PF18856.1 gi|304315027|ref|YP_003850174.1| - 0.00017 22.2 0.1 0.00059 20.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 12 PrkA PF06798.12 gi|304315027|ref|YP_003850174.1| - 0.024 14.3 0.5 0.38 10.4 0.0 2.5 3 0 0 3 3 3 0 PrkA serine protein kinase C-terminal domain zf-TFIIB PF13453.6 gi|304315027|ref|YP_003850174.1| - 0.04 13.3 1.8 0.82 9.1 0.2 2.4 1 1 1 2 2 2 0 Transcription factor zinc-finger HypA PF01155.19 gi|304315027|ref|YP_003850174.1| - 0.043 13.8 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|304315027|ref|YP_003850174.1| - 0.059 13.4 0.8 0.1 12.6 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|304315027|ref|YP_003850174.1| - 0.092 12.7 0.1 3.9 7.5 0.0 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF3300 PF11737.8 gi|304315027|ref|YP_003850174.1| - 0.18 11.3 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3300) zinc-ribbons_6 PF07191.12 gi|304315027|ref|YP_003850174.1| - 0.19 11.7 0.6 0.44 10.6 0.6 1.5 1 0 0 1 1 1 0 zinc-ribbons zf_UBZ PF18439.1 gi|304315027|ref|YP_003850174.1| - 0.29 10.7 1.6 9.5 5.9 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger RNA_POL_M_15KD PF02150.16 gi|304315027|ref|YP_003850174.1| - 0.31 10.9 1.2 8.4 6.4 0.1 2.5 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-IS66 PF13005.7 gi|304315027|ref|YP_003850174.1| - 5.8 7.4 5.3 19 5.7 0.1 3.8 3 1 0 3 3 3 0 zinc-finger binding domain of transposase IS66 AA_kinase PF00696.28 gi|304315028|ref|YP_003850175.1| - 6.2e-29 101.3 0.1 2.3e-28 99.4 0.1 1.7 1 1 0 1 1 1 1 Amino acid kinase family DUF2116 PF09889.9 gi|304315029|ref|YP_003850176.1| - 4.4e-28 97.1 1.5 4.7e-28 96.9 1.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) UPF0547 PF10571.9 gi|304315029|ref|YP_003850176.1| - 0.0096 16.0 4.4 0.029 14.5 4.4 1.7 1 1 1 2 2 2 1 Uncharacterised protein family UPF0547 DUF2256 PF10013.9 gi|304315029|ref|YP_003850176.1| - 0.028 14.5 4.1 1.4 9.1 0.3 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) Sec20 PF03908.13 gi|304315029|ref|YP_003850176.1| - 0.071 13.0 0.3 0.078 12.9 0.3 1.1 1 0 0 1 1 1 0 Sec20 Rad50_zn_hook PF04423.14 gi|304315029|ref|YP_003850176.1| - 0.14 12.0 3.8 0.67 9.8 3.8 1.9 1 1 0 1 1 1 0 Rad50 zinc hook motif YacG PF03884.14 gi|304315029|ref|YP_003850176.1| - 0.22 11.3 5.4 0.6 9.9 5.4 1.7 1 1 0 1 1 1 0 DNA gyrase inhibitor YacG Auto_anti-p27 PF06677.12 gi|304315029|ref|YP_003850176.1| - 1.3 9.3 5.9 5.2 7.3 4.1 2.0 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF308 PF03729.13 gi|304315030|ref|YP_003850177.1| - 3.2e-07 30.6 47.4 9.6e-07 29.0 20.1 3.1 2 1 1 3 3 3 2 Short repeat of unknown function (DUF308) TauE PF01925.19 gi|304315031|ref|YP_003850178.1| - 6.4e-49 166.7 43.6 7.7e-49 166.5 43.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE UPF0016 PF01169.19 gi|304315031|ref|YP_003850178.1| - 0.034 14.5 1.0 0.034 14.5 1.0 4.2 3 2 0 4 4 4 0 Uncharacterized protein family UPF0016 Glyco_trans_1_3 PF13528.6 gi|304315033|ref|YP_003850180.1| - 1.1e-108 363.4 0.1 1.4e-108 363.0 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 1 Glycos_transf_2 PF00535.26 gi|304315033|ref|YP_003850180.1| - 4.6e-28 98.2 0.3 2.2e-27 95.9 0.0 2.4 3 0 0 3 3 3 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|304315033|ref|YP_003850180.1| - 7.5e-12 45.6 0.0 1.6e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|304315033|ref|YP_003850180.1| - 1.1e-09 38.1 0.0 2.1e-07 30.7 0.0 2.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tran_28_C PF04101.16 gi|304315033|ref|YP_003850180.1| - 4e-06 26.9 0.0 7.6e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_tranf_2_4 PF13704.6 gi|304315033|ref|YP_003850180.1| - 0.00022 21.7 0.1 0.00088 19.7 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|304315033|ref|YP_003850180.1| - 0.0026 17.3 0.0 0.005 16.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|304315033|ref|YP_003850180.1| - 0.013 15.4 0.0 0.028 14.3 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase family group 2 TFIIB PF00382.19 gi|304315034|ref|YP_003850181.1| - 2.5e-41 139.6 1.0 7e-20 70.9 0.2 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|304315034|ref|YP_003850181.1| - 1.3e-17 63.0 1.6 1.3e-17 63.0 1.6 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|304315034|ref|YP_003850181.1| - 0.0012 18.3 0.0 0.21 11.1 0.0 2.9 2 0 0 2 2 2 1 Sigma-70, region 4 Cyclin_C PF02984.19 gi|304315034|ref|YP_003850181.1| - 0.0018 18.3 0.0 0.095 12.8 0.0 2.2 1 1 1 2 2 2 1 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|304315034|ref|YP_003850181.1| - 0.012 15.5 0.3 0.029 14.3 0.3 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|304315034|ref|YP_003850181.1| - 0.014 15.8 0.6 0.23 11.8 0.3 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar HTH_AsnC-type PF13404.6 gi|304315034|ref|YP_003850181.1| - 0.038 13.8 0.5 0.43 10.4 0.0 2.7 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|304315034|ref|YP_003850181.1| - 0.071 12.5 0.0 0.35 10.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 gi|304315034|ref|YP_003850181.1| - 0.073 12.8 0.2 1.2 8.9 0.0 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 Ribosomal_S27e PF01667.17 gi|304315034|ref|YP_003850181.1| - 0.096 12.4 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein S27 Elf1 PF05129.13 gi|304315034|ref|YP_003850181.1| - 0.099 12.7 0.2 0.4 10.7 0.0 2.0 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like LacI PF00356.21 gi|304315034|ref|YP_003850181.1| - 0.1 12.4 0.7 6.4 6.7 0.2 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family RPA_interact_C PF14768.6 gi|304315034|ref|YP_003850181.1| - 0.12 13.0 0.1 3.9 8.1 0.0 2.3 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HypA PF01155.19 gi|304315034|ref|YP_003850181.1| - 0.16 12.0 0.7 2.4 8.2 0.4 2.5 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0181 PF03701.14 gi|304315034|ref|YP_003850181.1| - 0.17 11.6 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) Cyclin_N PF00134.23 gi|304315034|ref|YP_003850181.1| - 0.17 11.7 0.0 2.1 8.1 0.0 2.1 2 0 0 2 2 2 0 Cyclin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|304315034|ref|YP_003850181.1| - 0.17 12.0 5.6 0.19 11.9 0.6 2.9 2 1 2 4 4 4 0 Zinc ribbon domain RB_B PF01857.20 gi|304315034|ref|YP_003850181.1| - 0.18 11.8 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain zinc_ribbon_2 PF13240.6 gi|304315034|ref|YP_003850181.1| - 1.5 8.6 4.3 7.6 6.4 0.7 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Gar1 PF04410.14 gi|304315035|ref|YP_003850182.1| - 1.8e-13 50.5 0.0 2e-13 50.4 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.16 gi|304315035|ref|YP_003850182.1| - 0.017 15.2 0.0 0.049 13.7 0.0 2.0 2 1 0 2 2 2 0 PRC-barrel domain LPG_synthase_TM PF03706.13 gi|304315036|ref|YP_003850183.1| - 2.2e-55 188.4 35.5 2.5e-55 188.2 35.5 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region SID-1_RNA_chan PF13965.6 gi|304315036|ref|YP_003850183.1| - 1.2 7.5 6.3 1.9 6.8 6.3 1.3 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 Sigma_reg_N PF13800.6 gi|304315036|ref|YP_003850183.1| - 7.1 7.0 8.1 24 5.3 2.5 2.9 2 0 0 2 2 2 0 Sigma factor regulator N-terminal RraA-like PF03737.15 gi|304315037|ref|YP_003850184.1| - 1.8e-36 125.5 1.1 2.3e-36 125.2 1.1 1.1 1 0 0 1 1 1 1 Aldolase/RraA DUF211 PF02680.14 gi|304315038|ref|YP_003850185.1| - 1.7e-38 130.6 1.0 1.9e-38 130.5 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Toprim PF01751.22 gi|304315039|ref|YP_003850186.1| - 2.1e-07 31.1 0.0 3.1e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|304315039|ref|YP_003850186.1| - 0.00073 20.0 0.0 0.0011 19.4 0.0 1.3 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|304315039|ref|YP_003850186.1| - 0.079 13.4 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 Toprim-like Toprim_4 PF13662.6 gi|304315040|ref|YP_003850187.1| - 2.5e-12 47.1 0.3 8.4e-12 45.4 0.3 2.0 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|304315040|ref|YP_003850187.1| - 1.1e-05 25.8 0.0 3e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|304315040|ref|YP_003850187.1| - 0.0042 17.3 0.2 0.043 14.1 0.2 2.7 1 1 0 1 1 1 1 Toprim domain Mg_chelatase PF01078.21 gi|304315041|ref|YP_003850188.1| - 1e-13 51.2 0.1 4.2e-08 32.8 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_32 PF13654.6 gi|304315041|ref|YP_003850188.1| - 5.1e-11 42.1 0.0 1.5e-06 27.3 0.2 3.1 3 0 0 3 3 3 2 AAA domain Sigma54_activat PF00158.26 gi|304315041|ref|YP_003850188.1| - 8.2e-10 38.6 0.0 0.00033 20.4 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|304315041|ref|YP_003850188.1| - 9.9e-08 31.9 0.0 0.0082 15.9 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|304315041|ref|YP_003850188.1| - 7.2e-07 29.3 0.0 0.00038 20.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|304315041|ref|YP_003850188.1| - 2.6e-06 27.9 0.0 0.0028 18.1 0.0 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|304315041|ref|YP_003850188.1| - 9.7e-05 22.7 0.0 0.0023 18.2 0.0 2.7 3 0 0 3 3 3 1 AAA domain MCM PF00493.23 gi|304315041|ref|YP_003850188.1| - 0.00022 20.4 0.0 0.2 10.7 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain AAA_16 PF13191.6 gi|304315041|ref|YP_003850188.1| - 0.0007 20.0 0.0 0.0028 18.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 gi|304315041|ref|YP_003850188.1| - 0.0048 17.4 0.0 0.013 16.1 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_7 PF12775.7 gi|304315041|ref|YP_003850188.1| - 0.0057 16.2 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region TIP49 PF06068.13 gi|304315041|ref|YP_003850188.1| - 0.0077 15.5 0.1 0.81 8.8 0.0 2.7 3 0 0 3 3 3 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|304315041|ref|YP_003850188.1| - 0.0078 16.0 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF2072 PF09845.9 gi|304315041|ref|YP_003850188.1| - 0.0087 16.3 0.1 0.0087 16.3 0.1 1.9 2 0 0 2 2 1 1 Zn-ribbon containing protein AAA_14 PF13173.6 gi|304315041|ref|YP_003850188.1| - 0.017 15.2 0.0 7.8 6.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain MCM_lid PF17855.1 gi|304315041|ref|YP_003850188.1| - 0.024 15.0 0.2 0.06 13.8 0.2 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain HypA PF01155.19 gi|304315041|ref|YP_003850188.1| - 0.03 14.3 0.1 0.072 13.1 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Thioredoxin_15 PF18403.1 gi|304315041|ref|YP_003850188.1| - 0.061 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like domain Sigma54_activ_2 PF14532.6 gi|304315041|ref|YP_003850188.1| - 0.065 13.3 0.0 0.19 11.8 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain NACHT PF05729.12 gi|304315041|ref|YP_003850188.1| - 0.085 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DUF1272 PF06906.11 gi|304315041|ref|YP_003850188.1| - 0.11 12.6 0.4 0.22 11.6 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DZR PF12773.7 gi|304315041|ref|YP_003850188.1| - 0.11 12.5 0.5 0.21 11.7 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon SMC_N PF02463.19 gi|304315041|ref|YP_003850188.1| - 0.16 11.4 0.0 0.51 9.7 0.0 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain zinc_ribbon_2 PF13240.6 gi|304315041|ref|YP_003850188.1| - 0.59 9.9 4.5 1.1 9.1 4.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|304315041|ref|YP_003850188.1| - 0.65 9.5 4.7 1.2 8.7 4.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|304315041|ref|YP_003850188.1| - 0.66 10.0 4.0 14 5.8 4.0 2.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Phage_integrase PF00589.22 gi|304315042|ref|YP_003850189.1| - 9.9e-50 168.7 0.1 1.5e-49 168.1 0.1 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|304315042|ref|YP_003850189.1| - 1e-05 25.7 0.0 0.00092 19.5 0.0 3.0 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|304315042|ref|YP_003850189.1| - 0.00019 21.8 5.0 0.00028 21.3 2.2 2.6 2 2 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|304315042|ref|YP_003850189.1| - 0.0026 18.1 3.6 0.0026 18.1 3.6 2.1 2 1 0 2 2 2 1 Phage integrase SAM-like domain HBD PF18534.1 gi|304315042|ref|YP_003850189.1| - 0.013 15.6 1.9 0.049 13.8 1.9 2.1 1 1 0 1 1 1 0 Helical bundle domain DUF3435 PF11917.8 gi|304315042|ref|YP_003850189.1| - 0.016 14.1 0.0 0.025 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Phage_integr_3 PF16795.5 gi|304315042|ref|YP_003850189.1| - 0.045 13.7 2.2 0.51 10.2 0.0 2.8 3 0 0 3 3 3 0 Archaeal phage integrase ArsP_1 PF03773.13 gi|304315043|ref|YP_003850190.1| - 6.1e-97 324.3 17.3 6.9e-97 324.1 17.3 1.0 1 0 0 1 1 1 1 Predicted permease Thioredoxin_3 PF13192.6 gi|304315044|ref|YP_003850191.1| - 1.9e-24 85.5 0.2 2e-24 85.4 0.2 1.0 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.11 gi|304315044|ref|YP_003850191.1| - 0.014 15.8 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Thioredoxin PF00085.20 gi|304315044|ref|YP_003850191.1| - 0.12 12.4 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin DUF2614 PF11023.8 gi|304315045|ref|YP_003850192.1| - 0.11 12.6 0.7 0.13 12.3 0.7 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain FdhE PF04216.12 gi|304315045|ref|YP_003850192.1| - 0.39 10.6 3.9 0.42 10.5 3.9 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation F420_oxidored PF03807.17 gi|304315046|ref|YP_003850193.1| - 2.2e-13 50.6 0.0 5e-13 49.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent P5CR_dimer PF14748.6 gi|304315046|ref|YP_003850193.1| - 8e-05 22.8 0.0 0.00012 22.3 0.0 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation Sacchrp_dh_NADP PF03435.18 gi|304315046|ref|YP_003850193.1| - 0.083 13.2 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Usp PF00582.26 gi|304315047|ref|YP_003850194.1| - 1e-38 133.1 3.3 1.1e-38 132.9 3.3 1.0 1 0 0 1 1 1 1 Universal stress protein family RNA_Me_trans PF04252.13 gi|304315047|ref|YP_003850194.1| - 0.011 15.4 0.1 0.014 15.0 0.1 1.2 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase IF3_N PF05198.16 gi|304315047|ref|YP_003850194.1| - 0.038 14.3 0.0 6.6 7.1 0.0 2.3 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Nitro_FeMo-Co PF02579.17 gi|304315047|ref|YP_003850194.1| - 0.054 13.8 0.1 0.13 12.6 0.1 1.8 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor DUF1451 PF07295.11 gi|304315047|ref|YP_003850194.1| - 0.058 13.4 0.4 0.074 13.1 0.4 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain HAD PF12710.7 gi|304315047|ref|YP_003850194.1| - 0.11 12.9 0.0 0.13 12.7 0.0 1.1 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase HTH_5 PF01022.20 gi|304315048|ref|YP_003850195.1| - 1.3e-22 79.4 0.1 2.1e-22 78.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|304315048|ref|YP_003850195.1| - 3.5e-15 55.8 0.0 5.3e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|304315048|ref|YP_003850195.1| - 0.0014 18.5 0.0 0.0025 17.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|304315048|ref|YP_003850195.1| - 0.0057 16.2 0.0 0.016 14.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|304315048|ref|YP_003850195.1| - 0.011 15.5 0.0 0.023 14.5 0.0 1.7 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|304315048|ref|YP_003850195.1| - 0.012 15.4 0.0 0.03 14.1 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain DUF3734 PF12536.8 gi|304315048|ref|YP_003850195.1| - 0.015 15.6 0.0 0.022 15.1 0.0 1.2 1 0 0 1 1 1 0 Patatin phospholipase Penicillinase_R PF03965.16 gi|304315048|ref|YP_003850195.1| - 0.072 13.4 0.0 0.49 10.8 0.0 2.0 2 0 0 2 2 2 0 Penicillinase repressor LPD11 PF18824.1 gi|304315048|ref|YP_003850195.1| - 0.084 13.0 0.1 0.2 11.8 0.1 1.6 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 11 HTH_34 PF13601.6 gi|304315048|ref|YP_003850195.1| - 0.09 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF742 PF05331.11 gi|304315048|ref|YP_003850195.1| - 0.11 12.3 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) XhlA PF10779.9 gi|304315048|ref|YP_003850195.1| - 0.12 12.6 0.3 0.18 12.1 0.3 1.2 1 0 0 1 1 1 0 Haemolysin XhlA PaaX PF07848.12 gi|304315048|ref|YP_003850195.1| - 0.19 12.0 0.0 0.27 11.5 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HisKA_2 PF07568.12 gi|304315049|ref|YP_003850196.1| - 9.4e-24 83.3 0.1 2e-23 82.2 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase Response_reg PF00072.24 gi|304315049|ref|YP_003850196.1| - 1.5e-20 73.5 0.3 3.1e-20 72.4 0.3 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|304315049|ref|YP_003850196.1| - 1.4e-09 38.4 0.0 3.1e-09 37.3 0.0 1.6 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.14 gi|304315049|ref|YP_003850196.1| - 0.00094 19.8 0.0 0.0027 18.4 0.0 1.9 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.6 gi|304315049|ref|YP_003850196.1| - 0.011 15.7 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HisKA_2 PF07568.12 gi|304315050|ref|YP_003850197.1| - 2.8e-27 94.6 1.5 5.7e-27 93.6 0.5 2.1 2 0 0 2 2 2 1 Histidine kinase Response_reg PF00072.24 gi|304315050|ref|YP_003850197.1| - 1.2e-15 57.7 0.0 2.4e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|304315050|ref|YP_003850197.1| - 3.5e-13 49.6 0.1 1.2e-12 48.0 0.0 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|304315050|ref|YP_003850197.1| - 9.1e-09 35.8 0.1 5.9e-08 33.2 0.1 2.2 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|304315050|ref|YP_003850197.1| - 1.1e-06 28.7 0.0 2.1e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|304315050|ref|YP_003850197.1| - 8.7e-06 26.4 0.0 2.2e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 HWE histidine kinase PAS_9 PF13426.7 gi|304315050|ref|YP_003850197.1| - 0.00013 22.2 0.0 0.00041 20.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|304315050|ref|YP_003850197.1| - 0.016 15.1 0.0 0.032 14.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|304315050|ref|YP_003850197.1| - 0.056 13.4 0.1 0.28 11.2 0.0 2.2 2 0 0 2 2 2 0 PAS fold DUF523 PF04463.12 gi|304315051|ref|YP_003850198.1| - 7.4e-35 120.0 0.0 1.1e-34 119.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.11 gi|304315051|ref|YP_003850198.1| - 1.1e-33 115.9 0.0 1.7e-33 115.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) IFT46_B_C PF12317.8 gi|304315051|ref|YP_003850198.1| - 0.0054 16.5 0.0 0.12 12.1 0.0 2.1 2 0 0 2 2 2 1 Intraflagellar transport complex B protein 46 C terminal DNA_photolyase PF00875.18 gi|304315052|ref|YP_003850199.1| - 1e-23 84.2 0.0 2.2e-23 83.1 0.0 1.5 1 0 0 1 1 1 1 DNA photolyase AP_endonuc_2 PF01261.24 gi|304315052|ref|YP_003850199.1| - 1.1e-05 24.9 0.0 7.7e-05 22.2 0.0 2.2 3 0 0 3 3 3 1 Xylose isomerase-like TIM barrel GGDEF PF00990.21 gi|304315052|ref|YP_003850199.1| - 0.12 12.2 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Diguanylate cyclase, GGDEF domain BioY PF02632.14 gi|304315053|ref|YP_003850200.1| - 1.4e-35 122.3 21.1 1.4e-35 122.3 21.1 1.6 1 1 1 2 2 2 1 BioY family CreD PF06123.12 gi|304315053|ref|YP_003850200.1| - 0.19 10.5 1.6 0.28 9.9 1.6 1.2 1 0 0 1 1 1 0 Inner membrane protein CreD UPF0242 PF06785.11 gi|304315053|ref|YP_003850200.1| - 0.32 11.1 0.2 0.47 10.5 0.2 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Tmemb_14 PF03647.13 gi|304315053|ref|YP_003850200.1| - 0.98 10.2 12.5 0.84 10.4 8.3 2.6 1 1 1 2 2 2 0 Transmembrane proteins 14C DUF1284 PF06935.11 gi|304315054|ref|YP_003850201.1| - 4e-24 85.0 0.0 4.8e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) Aldo_ket_red PF00248.21 gi|304315055|ref|YP_003850202.1| - 4.4e-32 111.5 0.0 3.2e-31 108.6 0.0 1.9 1 1 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.6 gi|304315055|ref|YP_003850202.1| - 7e-06 26.5 9.3 1.6e-05 25.4 9.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Sacchrp_dh_NADP PF03435.18 gi|304315055|ref|YP_003850202.1| - 0.2 11.9 0.0 0.43 10.9 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Fer4_8 PF13183.6 gi|304315055|ref|YP_003850202.1| - 4.2 7.9 11.8 13 6.3 11.9 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|304315055|ref|YP_003850202.1| - 4.5 7.1 8.9 8.5 6.2 2.6 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VIT1 PF01988.19 gi|304315056|ref|YP_003850203.1| - 0.25 11.2 3.0 0.29 11.0 3.0 1.0 1 0 0 1 1 1 0 VIT family APH PF01636.23 gi|304315057|ref|YP_003850204.1| - 3e-10 40.5 0.0 7.6e-05 22.8 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|304315057|ref|YP_003850204.1| - 2.7e-06 27.1 1.7 0.0071 16.0 0.0 2.4 1 1 1 2 2 2 2 Choline/ethanolamine kinase RIO1 PF01163.22 gi|304315057|ref|YP_003850204.1| - 5.2e-06 26.2 0.0 2.9e-05 23.8 0.0 1.9 1 1 0 1 1 1 1 RIO1 family EcKinase PF02958.20 gi|304315057|ref|YP_003850204.1| - 0.00012 21.6 0.4 0.0002 20.8 0.1 1.5 2 0 0 2 2 2 1 Ecdysteroid kinase Fructosamin_kin PF03881.14 gi|304315057|ref|YP_003850204.1| - 0.076 12.2 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Fructosamine kinase TFX_C PF14601.6 gi|304315058|ref|YP_003850205.1| - 2.5e-23 81.8 0.2 3.3e-23 81.4 0.2 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term HTH_19 PF12844.7 gi|304315058|ref|YP_003850205.1| - 1.4e-05 25.0 0.2 2.4e-05 24.3 0.2 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|304315058|ref|YP_003850205.1| - 2.3e-05 23.8 0.4 4.7e-05 22.8 0.4 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|304315058|ref|YP_003850205.1| - 0.00051 20.0 0.3 0.00098 19.1 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix KORA PF16509.5 gi|304315058|ref|YP_003850205.1| - 0.00066 19.9 0.5 0.0032 17.7 0.1 2.1 2 1 0 2 2 2 1 TrfB plasmid transcriptional repressor HTH_38 PF13936.6 gi|304315058|ref|YP_003850205.1| - 0.009 15.7 0.4 0.038 13.8 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|304315058|ref|YP_003850205.1| - 0.019 14.8 0.2 0.096 12.5 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_25 PF13413.6 gi|304315058|ref|YP_003850205.1| - 0.021 14.6 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.6 gi|304315058|ref|YP_003850205.1| - 0.024 14.6 0.2 0.043 13.8 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|304315058|ref|YP_003850205.1| - 0.095 12.8 0.1 0.29 11.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 gi|304315058|ref|YP_003850205.1| - 0.13 12.2 0.1 0.34 10.8 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_31 PF13560.6 gi|304315058|ref|YP_003850205.1| - 0.19 12.1 0.1 0.29 11.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FmdE PF02663.14 gi|304315059|ref|YP_003850206.1| - 3.1e-25 88.7 0.0 3.9e-25 88.4 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Molydop_binding PF01568.21 gi|304315060|ref|YP_003850207.1| - 4.1e-12 46.1 0.0 7.9e-12 45.2 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain GXGXG PF01493.19 gi|304315060|ref|YP_003850207.1| - 6e-09 35.8 25.5 1.6e-05 24.6 18.4 2.9 1 1 0 1 1 1 1 GXGXG motif Molybdopterin PF00384.22 gi|304315061|ref|YP_003850208.1| - 5.6e-18 65.1 0.0 2e-17 63.3 0.0 1.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|304315061|ref|YP_003850208.1| - 6.2e-06 26.0 0.8 0.0037 17.0 0.0 3.7 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|304315061|ref|YP_003850208.1| - 0.028 14.2 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ABC_tran PF00005.27 gi|304315062|ref|YP_003850209.1| - 1.2e-30 106.8 0.0 2.3e-30 105.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|304315062|ref|YP_003850209.1| - 6.1e-14 52.1 1.3 5.8e-13 48.9 0.1 2.6 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|304315062|ref|YP_003850209.1| - 4.9e-05 23.3 1.0 0.0098 15.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|304315062|ref|YP_003850209.1| - 0.00048 19.6 0.0 0.77 9.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.10 gi|304315062|ref|YP_003850209.1| - 0.00062 19.9 0.0 0.0016 18.6 0.0 1.7 1 0 0 1 1 1 1 TOBE domain T2SSE PF00437.20 gi|304315062|ref|YP_003850209.1| - 0.0069 15.5 0.0 0.016 14.3 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|304315062|ref|YP_003850209.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|304315062|ref|YP_003850209.1| - 0.027 14.7 0.1 0.36 11.1 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|304315062|ref|YP_003850209.1| - 0.04 13.3 0.0 0.1 11.9 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|304315062|ref|YP_003850209.1| - 0.043 14.3 0.0 0.068 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|304315062|ref|YP_003850209.1| - 0.055 12.8 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|304315062|ref|YP_003850209.1| - 0.067 13.5 0.1 0.12 12.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 gi|304315062|ref|YP_003850209.1| - 0.073 12.5 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_15 PF13175.6 gi|304315062|ref|YP_003850209.1| - 0.075 12.7 0.0 0.18 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|304315062|ref|YP_003850209.1| - 0.097 12.6 0.1 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 NACHT domain SH3_9 PF14604.6 gi|304315062|ref|YP_003850209.1| - 0.17 11.8 0.0 0.96 9.4 0.0 2.3 2 1 0 2 2 2 0 Variant SH3 domain BPD_transp_1 PF00528.22 gi|304315063|ref|YP_003850210.1| - 1.4e-14 54.2 13.1 1.4e-14 54.2 13.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF364 PF04016.12 gi|304315064|ref|YP_003850211.1| - 4e-14 52.4 0.0 5.7e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation PS_pyruv_trans PF04230.13 gi|304315064|ref|YP_003850211.1| - 0.13 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide pyruvyl transferase SBP_bac_11 PF13531.6 gi|304315065|ref|YP_003850212.1| - 2.4e-46 158.3 0.0 2.7e-46 158.2 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|304315065|ref|YP_003850212.1| - 2.5e-10 40.4 0.0 3.4e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_1 PF01547.25 gi|304315065|ref|YP_003850212.1| - 2.2e-09 37.7 0.9 8.3e-07 29.2 0.9 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.20 gi|304315065|ref|YP_003850212.1| - 1.4e-06 27.9 0.4 1.8e-06 27.6 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 gi|304315065|ref|YP_003850212.1| - 0.00028 20.9 1.4 0.00039 20.4 1.4 1.3 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_8 PF13416.6 gi|304315065|ref|YP_003850212.1| - 0.00046 20.1 2.8 0.0045 16.9 0.1 2.4 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein NIF3 PF01784.18 gi|304315065|ref|YP_003850212.1| - 0.028 14.0 0.1 0.047 13.3 0.1 1.4 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) PBP_like PF12727.7 gi|304315065|ref|YP_003850212.1| - 0.04 13.0 0.2 0.09 11.9 0.2 1.7 1 1 0 1 1 1 0 PBP superfamily domain UL73_N PF12522.8 gi|304315065|ref|YP_003850212.1| - 0.16 11.7 0.3 0.39 10.5 0.3 1.6 1 0 0 1 1 1 0 Cytomegalovirus glycoprotein N terminal DUF364 PF04016.12 gi|304315066|ref|YP_003850213.1| - 3.1e-40 137.1 0.0 4e-40 136.8 0.0 1.1 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|304315066|ref|YP_003850213.1| - 7.5e-14 51.7 0.0 1.4e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation Fer4 PF00037.27 gi|304315067|ref|YP_003850214.1| - 8.2e-54 177.4 82.4 7.8e-09 35.0 2.2 8.5 9 0 0 9 9 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304315067|ref|YP_003850214.1| - 4.8e-45 151.9 139.0 5.3e-10 39.7 5.2 5.8 1 1 7 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304315067|ref|YP_003850214.1| - 3.7e-31 105.9 77.9 1.3e-05 25.1 1.8 8.4 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304315067|ref|YP_003850214.1| - 8.8e-30 102.6 62.5 4e-08 33.3 11.4 6.6 5 2 2 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304315067|ref|YP_003850214.1| - 2.8e-28 97.8 67.4 5.2e-10 39.3 7.5 6.4 4 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304315067|ref|YP_003850214.1| - 1.3e-26 92.5 65.5 2.8e-08 33.8 4.6 6.2 3 3 5 8 8 8 8 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304315067|ref|YP_003850214.1| - 5.4e-24 84.9 65.1 8.5e-05 23.4 10.8 8.0 5 3 3 8 8 8 8 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|304315067|ref|YP_003850214.1| - 4.4e-19 67.3 79.2 0.0015 18.5 4.0 8.7 9 0 0 9 9 9 8 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304315067|ref|YP_003850214.1| - 7.2e-16 58.4 64.9 3.3e-05 24.2 8.9 7.0 5 3 2 7 7 7 5 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304315067|ref|YP_003850214.1| - 3.7e-10 40.2 72.0 0.012 16.1 0.6 7.8 2 1 5 7 7 7 6 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304315067|ref|YP_003850214.1| - 3.8e-09 36.3 82.2 0.019 15.4 1.5 8.7 8 1 0 9 9 9 6 4Fe-4S binding domain Fer4_3 PF12798.7 gi|304315067|ref|YP_003850214.1| - 1.1e-06 29.1 106.2 0.0097 16.8 4.6 8.6 9 0 0 9 9 8 7 4Fe-4S binding domain Fer4_15 PF13459.6 gi|304315067|ref|YP_003850214.1| - 6.2e-05 23.6 11.3 0.00052 20.7 5.1 8.5 6 3 2 8 8 7 3 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|304315067|ref|YP_003850214.1| - 0.00014 22.4 75.5 0.62 10.6 2.5 8.4 8 0 0 8 8 8 6 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|304315067|ref|YP_003850214.1| - 0.18 12.7 72.1 0.2 12.5 0.7 8.2 3 1 9 12 12 10 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|304315067|ref|YP_003850214.1| - 0.65 10.2 68.0 3.4 7.9 1.4 7.8 2 2 4 7 7 7 0 4Fe-4S dicluster domain DUF5305 PF17231.2 gi|304315068|ref|YP_003850215.1| - 0.24 10.8 0.0 0.32 10.4 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5305) Exo_endo_phos PF03372.23 gi|304315069|ref|YP_003850216.1| - 1.2e-06 28.2 0.0 2.1e-06 27.4 0.0 1.4 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|304315069|ref|YP_003850216.1| - 0.0084 15.9 0.0 0.016 15.0 0.0 1.6 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase DUF4491 PF14898.6 gi|304315070|ref|YP_003850217.1| - 1.1 9.8 8.5 5.6 7.5 2.2 3.3 2 2 1 4 4 4 0 Domain of unknown function (DUF4491) MarR PF01047.22 gi|304315071|ref|YP_003850218.1| - 6.3e-07 29.2 0.0 1.1e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|304315071|ref|YP_003850218.1| - 1.1e-06 28.5 0.0 1.9e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|304315071|ref|YP_003850218.1| - 0.00024 21.0 0.1 0.0005 20.0 0.1 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|304315071|ref|YP_003850218.1| - 0.0015 18.2 0.0 0.0024 17.6 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_27 PF13463.6 gi|304315071|ref|YP_003850218.1| - 0.09 13.3 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF746 PF05344.11 gi|304315071|ref|YP_003850218.1| - 0.11 12.3 0.0 17 5.3 0.0 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) DASH_Dam1 PF08653.10 gi|304315071|ref|YP_003850218.1| - 0.15 11.8 0.3 0.44 10.4 0.0 1.8 2 0 0 2 2 2 0 DASH complex subunit Dam1 DUF2491 PF10679.9 gi|304315072|ref|YP_003850219.1| - 0.14 11.4 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2491) TM1586_NiRdase PF14512.6 gi|304315073|ref|YP_003850220.1| - 2e-38 132.1 0.0 2.3e-38 131.9 0.0 1.0 1 0 0 1 1 1 1 Putative TM nitroreductase Nitroreductase PF00881.24 gi|304315073|ref|YP_003850220.1| - 3.8e-07 30.3 0.4 0.011 15.9 0.0 2.8 2 1 0 2 2 2 2 Nitroreductase family Phage_holin_5_2 PF16079.5 gi|304315074|ref|YP_003850221.1| - 0.11 12.8 6.8 2 8.8 0.4 2.6 1 1 2 3 3 3 0 Phage holin family Hol44, in holin superfamily V CMD PF02627.20 gi|304315075|ref|YP_003850222.1| - 1.6e-18 66.5 3.6 1.8e-18 66.3 3.6 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Fe_dep_repress PF01325.19 gi|304315076|ref|YP_003850223.1| - 2.3e-26 91.7 0.3 3.8e-26 91.1 0.3 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|304315076|ref|YP_003850223.1| - 1.7e-22 79.3 0.2 3.1e-22 78.4 0.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR PF01047.22 gi|304315076|ref|YP_003850223.1| - 6.4e-08 32.4 0.0 1.2e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|304315076|ref|YP_003850223.1| - 1.6e-05 24.7 0.0 3.2e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|304315076|ref|YP_003850223.1| - 0.00072 20.0 0.1 0.0013 19.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|304315076|ref|YP_003850223.1| - 0.0011 18.9 0.1 0.0061 16.5 0.0 2.2 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|304315076|ref|YP_003850223.1| - 0.0016 18.3 0.0 0.003 17.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|304315076|ref|YP_003850223.1| - 0.0016 18.3 0.2 0.0038 17.1 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|304315076|ref|YP_003850223.1| - 0.0017 18.6 0.2 0.0025 18.1 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator TFIIE_alpha PF02002.17 gi|304315076|ref|YP_003850223.1| - 0.0061 16.4 0.0 0.0096 15.8 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.6 gi|304315076|ref|YP_003850223.1| - 0.0086 15.6 0.1 0.031 13.8 0.0 2.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding FeoC PF09012.10 gi|304315076|ref|YP_003850223.1| - 0.0094 16.0 0.0 0.015 15.4 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator Rio2_N PF09202.11 gi|304315076|ref|YP_003850223.1| - 0.019 15.2 0.0 0.039 14.2 0.0 1.5 1 1 0 1 1 1 0 Rio2, N-terminal HrcA_DNA-bdg PF03444.15 gi|304315076|ref|YP_003850223.1| - 0.022 14.4 0.0 0.078 12.6 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_IclR PF09339.10 gi|304315076|ref|YP_003850223.1| - 0.14 12.0 0.3 0.48 10.3 0.1 2.1 2 1 0 2 2 2 0 IclR helix-turn-helix domain DUF498 PF04430.14 gi|304315078|ref|YP_003850225.1| - 1.6e-11 44.2 0.0 1.3e-10 41.2 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) GlnE PF03710.15 gi|304315078|ref|YP_003850225.1| - 0.0074 15.7 0.0 0.0093 15.4 0.0 1.1 1 0 0 1 1 1 1 Glutamate-ammonia ligase adenylyltransferase DUF45 PF01863.17 gi|304315079|ref|YP_003850226.1| - 5.1e-39 134.5 0.0 3.2e-36 125.3 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function DUF45 WLM PF08325.10 gi|304315079|ref|YP_003850226.1| - 0.028 14.5 0.1 0.044 13.9 0.1 1.2 1 0 0 1 1 1 0 WLM domain Zincin_2 PF10103.9 gi|304315079|ref|YP_003850226.1| - 0.084 12.1 0.0 9.4 5.4 0.1 2.1 2 0 0 2 2 2 0 Zincin-like metallopeptidase SWI2_SNF2 PF18766.1 gi|304315080|ref|YP_003850227.1| - 2.1e-63 214.0 0.1 4.7e-63 212.9 0.1 1.6 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|304315080|ref|YP_003850227.1| - 7.9e-37 127.1 0.2 5.7e-36 124.3 0.0 2.3 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|304315080|ref|YP_003850227.1| - 3.6e-22 79.2 0.7 1.5e-21 77.2 0.1 2.3 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DUF3387 PF11867.8 gi|304315080|ref|YP_003850227.1| - 2.8e-13 50.0 4.4 8.1e-13 48.5 4.4 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF3387) DEAD PF00270.29 gi|304315080|ref|YP_003850227.1| - 2.1e-05 24.4 0.0 6.9e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|304315080|ref|YP_003850227.1| - 0.013 15.8 0.1 0.17 12.1 0.0 2.9 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|304315080|ref|YP_003850227.1| - 0.077 12.2 0.1 0.22 10.7 0.1 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MnmE_helical PF12631.7 gi|304315080|ref|YP_003850227.1| - 1.5 9.0 3.5 19 5.4 0.9 3.0 2 2 0 2 2 2 0 MnmE helical domain Methylase_S PF01420.19 gi|304315081|ref|YP_003850228.1| - 3.3e-43 147.8 0.2 5.7e-28 98.2 0.1 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain AAT PF03417.16 gi|304315081|ref|YP_003850228.1| - 0.0077 15.9 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase N6_Mtase PF02384.16 gi|304315082|ref|YP_003850229.1| - 7.8e-118 393.3 0.0 1.1e-117 392.8 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|304315082|ref|YP_003850229.1| - 3.9e-14 53.4 8.4 1.9e-12 48.0 4.4 2.8 3 0 0 3 3 3 2 HsdM N-terminal domain Eco57I PF07669.11 gi|304315082|ref|YP_003850229.1| - 0.00068 20.1 0.0 0.0067 16.9 0.0 2.7 2 1 0 2 2 2 1 Eco57I restriction-modification methylase MarR_2 PF12802.7 gi|304315082|ref|YP_003850229.1| - 0.003 17.4 0.0 0.0073 16.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|304315082|ref|YP_003850229.1| - 0.0043 17.5 0.1 0.013 16.0 0.1 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|304315082|ref|YP_003850229.1| - 0.033 14.1 0.1 0.08 12.9 0.1 1.6 1 0 0 1 1 1 0 MarR family PaaX PF07848.12 gi|304315082|ref|YP_003850229.1| - 0.051 13.8 0.0 0.16 12.2 0.0 1.9 1 0 0 1 1 1 0 PaaX-like protein PEPcase_2 PF14010.6 gi|304315083|ref|YP_003850230.1| - 4.1e-194 645.7 0.0 4.6e-194 645.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Heliorhodopsin PF18761.1 gi|304315084|ref|YP_003850231.1| - 2.6e-98 328.2 17.6 2.9e-98 328.0 17.6 1.0 1 0 0 1 1 1 1 Heliorhodopsin ATP-grasp_3 PF02655.14 gi|304315085|ref|YP_003850232.1| - 2.2e-41 141.6 0.1 5.9e-41 140.2 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|304315085|ref|YP_003850232.1| - 8e-08 32.1 0.0 2.9e-07 30.3 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|304315085|ref|YP_003850232.1| - 4.4e-05 23.1 0.1 0.00014 21.5 0.0 1.9 2 1 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|304315085|ref|YP_003850232.1| - 0.0081 15.4 0.0 1.3 8.2 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp RimK PF08443.11 gi|304315085|ref|YP_003850232.1| - 0.043 13.4 0.0 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 RimK-like ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|304315085|ref|YP_003850232.1| - 0.062 12.5 0.0 0.27 10.4 0.0 1.9 2 0 0 2 2 2 0 YheC/D like ATP-grasp GSH-S_ATP PF02955.16 gi|304315085|ref|YP_003850232.1| - 0.19 11.1 0.0 0.41 10.0 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain Ribosomal_L22e PF01776.17 gi|304315086|ref|YP_003850233.1| - 0.076 13.4 0.1 0.092 13.1 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L22e protein family ATP1G1_PLM_MAT8 PF02038.16 gi|304315087|ref|YP_003850234.1| - 1.2 8.7 6.3 0.83 9.1 5.2 1.4 1 1 0 1 1 1 0 ATP1G1/PLM/MAT8 family Insulin_TMD PF17870.1 gi|304315087|ref|YP_003850234.1| - 3.8 7.7 6.2 13 6.0 6.5 1.6 1 1 1 2 2 2 0 Insulin receptor trans-membrane segment DUF61 PF01886.16 gi|304315088|ref|YP_003850235.1| - 4.9e-42 143.0 0.2 5.4e-42 142.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 PL48 PF15903.5 gi|304315090|ref|YP_003850237.1| - 1.4e-05 24.3 2.5 1.5e-05 24.2 2.5 1.0 1 0 0 1 1 1 1 Filopodia upregulated, FAM65 AIP3 PF03915.13 gi|304315090|ref|YP_003850237.1| - 0.00043 19.5 0.7 0.00053 19.2 0.7 1.1 1 0 0 1 1 1 1 Actin interacting protein 3 Syntaxin-6_N PF09177.11 gi|304315090|ref|YP_003850237.1| - 0.028 15.0 2.6 0.13 12.8 0.3 2.1 1 1 1 2 2 2 0 Syntaxin 6, N-terminal ATP-synt_D PF01813.17 gi|304315090|ref|YP_003850237.1| - 0.048 13.5 5.6 0.16 11.8 1.8 2.1 1 1 1 2 2 2 0 ATP synthase subunit D Prominin PF05478.11 gi|304315090|ref|YP_003850237.1| - 0.065 11.2 0.5 4 5.3 0.1 1.9 1 1 1 2 2 2 0 Prominin DivIC PF04977.15 gi|304315090|ref|YP_003850237.1| - 0.091 12.5 2.8 5.5 6.8 0.0 2.5 3 0 0 3 3 3 0 Septum formation initiator DUF724 PF05266.14 gi|304315090|ref|YP_003850237.1| - 0.093 12.5 0.3 0.12 12.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Mod_r PF07200.13 gi|304315090|ref|YP_003850237.1| - 0.1 12.7 2.9 0.34 11.0 0.9 2.0 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Tektin PF03148.14 gi|304315090|ref|YP_003850237.1| - 0.11 11.3 5.3 0.43 9.3 0.5 2.0 1 1 1 2 2 2 0 Tektin family RPA_interact_N PF14766.6 gi|304315090|ref|YP_003850237.1| - 0.12 12.0 2.3 4.2 7.1 0.1 2.6 2 0 0 2 2 2 0 Replication protein A interacting N-terminal TPR_MLP1_2 PF07926.12 gi|304315090|ref|YP_003850237.1| - 0.15 12.1 3.2 2.1 8.5 3.3 2.0 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein YabA PF06156.13 gi|304315090|ref|YP_003850237.1| - 0.15 12.7 1.8 5.7 7.6 0.0 2.2 2 0 0 2 2 2 0 Initiation control protein YabA FapA PF03961.13 gi|304315090|ref|YP_003850237.1| - 0.18 10.3 0.6 0.22 10.1 0.6 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF883 PF05957.13 gi|304315090|ref|YP_003850237.1| - 0.51 11.0 3.5 0.91 10.2 0.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) TMF_TATA_bd PF12325.8 gi|304315090|ref|YP_003850237.1| - 0.58 10.4 10.9 2.5 8.3 1.1 2.6 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding COG2 PF06148.11 gi|304315090|ref|YP_003850237.1| - 0.78 9.8 3.6 7.5 6.7 3.2 2.3 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 ZapB PF06005.12 gi|304315090|ref|YP_003850237.1| - 1.6 9.2 7.2 1.4e+02 3.0 7.0 2.5 1 1 0 1 1 1 0 Cell division protein ZapB UPF0449 PF15136.6 gi|304315090|ref|YP_003850237.1| - 1.7 9.2 4.8 36 4.9 1.4 2.7 2 1 1 3 3 3 0 Uncharacterised protein family UPF0449 DUF22 PF01629.16 gi|304315091|ref|YP_003850238.1| - 3.5e-17 62.0 0.0 4e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF22 ATP-synt_D PF01813.17 gi|304315092|ref|YP_003850239.1| - 1e-62 211.5 13.4 1.2e-62 211.3 13.4 1.0 1 0 0 1 1 1 1 ATP synthase subunit D CDT1_C PF16679.5 gi|304315092|ref|YP_003850239.1| - 0.015 15.7 1.1 0.098 13.1 0.1 2.6 1 1 1 2 2 2 0 DNA replication factor Cdt1 C-terminal domain ZapB PF06005.12 gi|304315092|ref|YP_003850239.1| - 3 8.3 8.3 12 6.4 1.7 3.1 2 1 0 2 2 2 0 Cell division protein ZapB ATP-synt_ab PF00006.25 gi|304315093|ref|YP_003850240.1| - 2.9e-69 233.0 0.0 3.9e-69 232.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|304315093|ref|YP_003850240.1| - 8.7e-14 51.8 3.4 2e-13 50.7 3.4 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|304315093|ref|YP_003850240.1| - 2.4e-05 24.4 1.8 6.4e-05 23.0 1.8 1.7 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|304315094|ref|YP_003850241.1| - 8.1e-92 306.7 0.0 1.3e-91 306.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|304315094|ref|YP_003850241.1| - 3.8e-48 162.3 0.2 7.5e-48 161.4 0.2 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|304315094|ref|YP_003850241.1| - 1.2e-16 61.0 2.6 2.5e-16 60.0 2.6 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|304315094|ref|YP_003850241.1| - 0.015 15.6 0.0 0.031 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Myosin_N PF02736.19 gi|304315094|ref|YP_003850241.1| - 0.61 10.0 2.3 8.8 6.3 0.2 2.9 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain ATP-synt_F PF01990.17 gi|304315095|ref|YP_003850242.1| - 2.4e-25 88.7 0.4 2.8e-25 88.4 0.4 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|304315096|ref|YP_003850243.1| - 5.4e-71 239.8 0.0 6e-71 239.7 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit SinI PF08671.10 gi|304315096|ref|YP_003850243.1| - 0.018 14.8 0.2 24 4.8 0.0 3.5 3 0 0 3 3 3 0 Anti-repressor SinI MerR-DNA-bind PF09278.11 gi|304315096|ref|YP_003850243.1| - 0.12 12.9 0.0 2.1 9.0 0.0 2.8 3 0 0 3 3 3 0 MerR, DNA binding vATP-synt_E PF01991.18 gi|304315097|ref|YP_003850244.1| - 3.1e-58 196.5 15.0 3.5e-58 196.3 15.0 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Trimer_CC PF08954.11 gi|304315097|ref|YP_003850244.1| - 0.0064 16.0 1.1 0.019 14.5 1.1 1.9 1 0 0 1 1 1 1 Trimerisation motif DivIVA PF05103.13 gi|304315097|ref|YP_003850244.1| - 0.018 15.1 5.4 0.018 15.1 5.4 2.9 2 2 1 3 3 3 0 DivIVA protein ATP-synt_B PF00430.18 gi|304315097|ref|YP_003850244.1| - 0.047 13.8 27.8 0.034 14.2 12.1 3.0 2 1 1 3 3 3 0 ATP synthase B/B' CF(0) HrpE PF06188.12 gi|304315097|ref|YP_003850244.1| - 3.4 7.5 11.9 10 5.9 5.9 2.1 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_C PF00137.21 gi|304315098|ref|YP_003850245.1| - 2.5e-35 120.6 29.6 1.8e-17 63.4 12.1 2.5 2 0 0 2 2 2 2 ATP synthase subunit C V_ATPase_I PF01496.19 gi|304315099|ref|YP_003850246.1| - 8.1e-22 77.0 10.1 6.1e-17 60.9 0.1 3.8 3 1 1 4 4 4 3 V-type ATPase 116kDa subunit family APG6_N PF17675.1 gi|304315099|ref|YP_003850246.1| - 1.2 9.7 11.7 0.83 10.2 3.7 2.4 2 0 0 2 2 2 0 Apg6 coiled-coil region HMMR_N PF15905.5 gi|304315099|ref|YP_003850246.1| - 2.3 7.6 10.4 2.2 7.7 2.0 2.2 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal V-ATPase_G_2 PF16999.5 gi|304315100|ref|YP_003850247.1| - 3.8e-06 27.3 14.4 8.5e-05 22.9 14.0 2.1 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|304315100|ref|YP_003850247.1| - 6.2e-06 26.3 15.5 0.0036 17.4 6.0 2.1 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|304315100|ref|YP_003850247.1| - 0.0017 17.8 13.9 0.04 13.3 4.9 2.9 1 1 2 3 3 3 2 Domain of unknown function (DUF3552) HrpE PF06188.12 gi|304315100|ref|YP_003850247.1| - 0.0019 18.1 3.1 0.0038 17.1 3.1 1.5 1 1 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E FAM25 PF15825.5 gi|304315100|ref|YP_003850247.1| - 0.024 15.0 1.1 0.16 12.4 0.1 2.2 1 1 1 2 2 2 0 FAM25 family DivIVA PF05103.13 gi|304315100|ref|YP_003850247.1| - 0.029 14.5 10.4 1.7 8.7 10.5 2.1 1 1 1 2 2 2 0 DivIVA protein DUF883 PF05957.13 gi|304315100|ref|YP_003850247.1| - 0.044 14.4 9.6 0.15 12.7 6.9 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) V-ATPase_G PF03179.15 gi|304315100|ref|YP_003850247.1| - 0.061 13.9 12.3 0.69 10.5 12.3 2.0 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit LUC7 PF03194.15 gi|304315100|ref|YP_003850247.1| - 0.17 11.5 5.9 0.18 11.4 5.9 1.0 1 0 0 1 1 1 0 LUC7 N_terminus SCAB_CC PF16712.5 gi|304315100|ref|YP_003850247.1| - 0.19 11.6 10.5 0.27 11.0 5.7 2.0 1 1 1 2 2 2 0 Coiled-coil regions of plant-specific actin-binding protein Rota_NSP4 PF01452.16 gi|304315100|ref|YP_003850247.1| - 0.22 11.2 1.0 0.23 11.1 1.0 1.2 1 1 0 1 1 1 0 Rotavirus non structural protein CENP-H PF05837.12 gi|304315100|ref|YP_003850247.1| - 0.22 11.9 6.8 0.27 11.7 6.8 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) YtxH PF12732.7 gi|304315100|ref|YP_003850247.1| - 0.39 11.3 7.8 2.7 8.6 2.1 2.1 1 1 1 2 2 2 0 YtxH-like protein Endonuc_Holl PF10107.9 gi|304315100|ref|YP_003850247.1| - 0.86 9.4 6.7 1.1 9.1 6.7 1.2 1 1 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase PPP1R35_C PF15503.6 gi|304315100|ref|YP_003850247.1| - 1.4 8.7 5.0 0.41 10.5 1.2 1.8 1 1 1 2 2 2 0 Protein phosphatase 1 regulatory subunit 35 C-terminus PTS_IIA PF02255.16 gi|304315100|ref|YP_003850247.1| - 3.5 7.7 10.2 4.6 7.3 1.0 2.9 1 1 2 3 3 3 0 PTS system, Lactose/Cellobiose specific IIA subunit Citrate_synt PF00285.21 gi|304315101|ref|YP_003850248.1| - 1e-43 149.8 0.0 6.4e-36 124.2 0.0 2.0 1 1 1 2 2 2 2 Citrate synthase, C-terminal domain Fumerase PF05681.14 gi|304315102|ref|YP_003850249.1| - 1.2e-60 205.3 0.0 1.3e-60 205.1 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Peptidase_U32 PF01136.19 gi|304315103|ref|YP_003850250.1| - 2e-05 23.9 0.1 4.9e-05 22.6 0.0 1.6 2 0 0 2 2 2 1 Peptidase family U32 Amidohydro_2 PF04909.14 gi|304315103|ref|YP_003850250.1| - 0.045 13.5 0.0 0.14 11.9 0.0 1.6 1 1 0 2 2 2 0 Amidohydrolase DUF4191 PF13829.6 gi|304315103|ref|YP_003850250.1| - 0.18 11.1 0.0 0.32 10.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) MmgE_PrpD PF03972.14 gi|304315104|ref|YP_003850251.1| - 1.8e-112 376.1 0.0 2.1e-112 375.9 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family FliG_N PF14842.6 gi|304315104|ref|YP_003850251.1| - 0.031 14.8 0.0 0.11 13.1 0.0 1.9 1 0 0 1 1 1 0 FliG N-terminal domain DUF1743 PF08489.11 gi|304315105|ref|YP_003850252.1| - 4.1e-40 136.5 0.0 3.7e-39 133.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|304315105|ref|YP_003850252.1| - 2.8e-05 24.0 0.0 6.1e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|304315105|ref|YP_003850252.1| - 0.00057 20.0 0.0 0.0014 18.8 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF1922 PF09082.10 gi|304315105|ref|YP_003850252.1| - 3.2 8.1 7.7 2.1 8.7 4.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1922) HTH_3 PF01381.22 gi|304315106|ref|YP_003850253.1| - 4.3e-15 55.5 0.8 1.8e-14 53.5 0.3 2.3 3 0 0 3 3 3 1 Helix-turn-helix HTH_31 PF13560.6 gi|304315106|ref|YP_003850253.1| - 2.1e-11 44.0 0.1 1.6e-08 34.7 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_19 PF12844.7 gi|304315106|ref|YP_003850253.1| - 1.5e-10 40.9 0.5 1.7e-09 37.6 0.4 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|304315106|ref|YP_003850253.1| - 0.00022 21.0 0.2 0.028 14.3 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|304315106|ref|YP_003850253.1| - 0.0012 19.3 0.1 0.0025 18.2 0.1 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.12 gi|304315106|ref|YP_003850253.1| - 0.0046 16.9 0.0 0.017 15.0 0.0 2.0 1 0 0 1 1 1 1 HTH domain LacI PF00356.21 gi|304315106|ref|YP_003850253.1| - 0.013 15.3 0.1 0.048 13.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family TetR_N PF00440.23 gi|304315106|ref|YP_003850253.1| - 0.023 14.5 0.0 0.11 12.3 0.0 2.1 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family HTH_23 PF13384.6 gi|304315106|ref|YP_003850253.1| - 0.038 13.8 0.0 0.14 12.0 0.0 2.0 1 0 0 1 1 1 0 Homeodomain-like domain HTH_17 PF12728.7 gi|304315106|ref|YP_003850253.1| - 0.046 13.9 0.0 0.25 11.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4115 PF13464.6 gi|304315108|ref|YP_003850255.1| - 0.034 14.3 0.1 0.068 13.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4115) 2-Hacid_dh_C PF02826.19 gi|304315109|ref|YP_003850256.1| - 9.6e-71 236.8 0.1 2.1e-70 235.7 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|304315109|ref|YP_003850256.1| - 2.9e-43 146.8 4.7 5.3e-43 145.9 0.9 2.6 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|304315109|ref|YP_003850256.1| - 1.2e-11 44.1 0.1 1.2e-11 44.1 0.1 2.7 3 0 0 3 3 3 1 ACT domain NAD_binding_2 PF03446.15 gi|304315109|ref|YP_003850256.1| - 4.4e-06 26.9 1.1 1.2e-05 25.5 0.0 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|304315109|ref|YP_003850256.1| - 1.4e-05 25.6 1.0 0.01 16.4 0.0 2.9 2 0 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|304315109|ref|YP_003850256.1| - 9.8e-05 22.5 0.8 0.00023 21.3 0.0 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|304315109|ref|YP_003850256.1| - 0.0001 21.9 0.1 0.00032 20.3 0.0 1.9 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain UDPG_MGDP_dh_C PF03720.15 gi|304315109|ref|YP_003850256.1| - 0.00014 22.2 0.3 0.0073 16.7 0.0 2.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_7 PF13241.6 gi|304315109|ref|YP_003850256.1| - 0.0076 16.7 0.2 0.04 14.4 0.0 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding GFO_IDH_MocA PF01408.22 gi|304315109|ref|YP_003850256.1| - 0.085 13.7 0.1 1 10.2 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Resolvase PF00239.21 gi|304315109|ref|YP_003850256.1| - 0.097 12.8 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Resolvase, N terminal domain Prok-JAB PF14464.6 gi|304315110|ref|YP_003850257.1| - 6.6e-12 45.2 0.0 8.4e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|304315110|ref|YP_003850257.1| - 6.3e-05 22.9 0.0 0.00065 19.7 0.0 2.0 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Thg1 PF04446.12 gi|304315111|ref|YP_003850258.1| - 1.5e-28 99.3 0.0 2.1e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|304315111|ref|YP_003850258.1| - 2.4e-05 24.5 0.0 3.3e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Thg1 C terminal domain LRR_adjacent PF08191.11 gi|304315111|ref|YP_003850258.1| - 0.11 12.8 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 LRR adjacent DUF108 PF01958.18 gi|304315112|ref|YP_003850259.1| - 5.4e-31 106.8 0.1 9.2e-31 106.1 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|304315112|ref|YP_003850259.1| - 8.7e-25 87.7 0.1 1.5e-24 86.9 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|304315112|ref|YP_003850259.1| - 5.4e-06 26.9 0.1 1.6e-05 25.4 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|304315112|ref|YP_003850259.1| - 0.0016 19.2 0.0 0.0034 18.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|304315112|ref|YP_003850259.1| - 0.0042 17.2 0.2 0.041 14.0 0.1 2.2 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|304315112|ref|YP_003850259.1| - 0.041 14.3 0.1 0.063 13.7 0.1 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain PRC PF05239.16 gi|304315113|ref|YP_003850260.1| - 2e-12 47.0 2.7 8.8e-12 44.9 2.7 1.9 1 1 0 1 1 1 1 PRC-barrel domain Alpha_Helical PF18489.1 gi|304315114|ref|YP_003850261.1| - 7.3e-50 168.4 0.0 1e-49 167.9 0.0 1.2 1 0 0 1 1 1 1 Alpha helical domain tRNA_bind PF01588.20 gi|304315114|ref|YP_003850261.1| - 1.4e-16 60.4 0.0 2.1e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain DUF3400 PF11880.8 gi|304315114|ref|YP_003850261.1| - 0.06 12.9 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) Radical_SAM PF04055.21 gi|304315115|ref|YP_003850262.1| - 1e-25 91.0 0.0 1.6e-25 90.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|304315115|ref|YP_003850262.1| - 9.9e-11 42.1 0.3 8.1e-10 39.1 0.0 2.3 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|304315115|ref|YP_003850262.1| - 3.8e-07 30.2 0.0 8.7e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Aldedh PF00171.22 gi|304315116|ref|YP_003850263.1| - 1.9e-164 547.6 0.0 2.3e-164 547.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|304315116|ref|YP_003850263.1| - 0.00034 19.8 0.0 0.00042 19.5 0.0 1.1 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Class_IIIsignal PF04021.12 gi|304315117|ref|YP_003850264.1| - 2.4e-06 27.4 2.2 3.1e-06 27.0 2.2 1.2 1 0 0 1 1 1 1 Class III signal peptide Oleosin PF01277.17 gi|304315117|ref|YP_003850264.1| - 0.061 13.1 0.0 0.064 13.0 0.0 1.1 1 0 0 1 1 1 0 Oleosin T2SSF PF00482.23 gi|304315118|ref|YP_003850265.1| - 1.2e-22 80.2 4.1 1.2e-22 80.2 4.1 3.3 3 1 1 4 4 4 1 Type II secretion system (T2SS), protein F Pam17 PF08566.10 gi|304315118|ref|YP_003850265.1| - 0.0069 16.2 2.8 1.1 9.0 0.7 2.2 2 0 0 2 2 2 2 Mitochondrial import protein Pam17 Yip1 PF04893.17 gi|304315118|ref|YP_003850265.1| - 0.41 10.4 19.4 0.52 10.0 7.6 2.2 2 0 0 2 2 2 0 Yip1 domain Herpes_US9 PF06072.11 gi|304315118|ref|YP_003850265.1| - 9.8 6.1 8.5 0.24 11.3 0.9 2.3 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 Peptidase_M24 PF00557.24 gi|304315119|ref|YP_003850266.1| - 6.5e-51 173.0 0.0 9.9e-51 172.4 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|304315119|ref|YP_003850266.1| - 2.9e-08 34.4 0.0 5.7e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain LPD7 PF18821.1 gi|304315119|ref|YP_003850266.1| - 0.036 14.2 0.2 0.13 12.4 0.0 1.9 2 0 0 2 2 2 0 Large polyvalent protein-associated domain 7 DUF268 PF03269.14 gi|304315119|ref|YP_003850266.1| - 0.051 13.4 0.0 0.079 12.8 0.0 1.3 1 0 0 1 1 1 0 Caenorhabditis protein of unknown function, DUF268 HIT PF01230.23 gi|304315120|ref|YP_003850267.1| - 0.003 18.3 0.0 0.0042 17.8 0.0 1.3 1 0 0 1 1 1 1 HIT domain GalP_UDP_tr_C PF02744.17 gi|304315120|ref|YP_003850267.1| - 0.057 13.1 0.0 0.074 12.8 0.0 1.1 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain Fe-ADH PF00465.19 gi|304315121|ref|YP_003850268.1| - 3.4e-122 407.8 0.4 3.8e-122 407.6 0.4 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|304315121|ref|YP_003850268.1| - 2.5e-18 66.7 3.0 1.3e-10 41.4 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase HisKA_2 PF07568.12 gi|304315122|ref|YP_003850269.1| - 7.1e-31 106.1 0.5 1.4e-30 105.2 0.5 1.5 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.7 gi|304315122|ref|YP_003850269.1| - 2.5e-12 47.0 0.0 8.5e-12 45.3 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|304315122|ref|YP_003850269.1| - 2e-10 40.6 0.0 1e-09 38.4 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|304315122|ref|YP_003850269.1| - 1.6e-09 38.3 0.0 7.9e-09 36.0 0.0 2.2 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|304315122|ref|YP_003850269.1| - 8.8e-09 35.2 0.0 2.2e-08 33.9 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|304315122|ref|YP_003850269.1| - 1.6e-08 34.6 0.0 3e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.14 gi|304315122|ref|YP_003850269.1| - 4.7e-06 27.2 0.0 1.5e-05 25.6 0.0 1.9 2 0 0 2 2 2 1 HWE histidine kinase PAS_4 PF08448.10 gi|304315122|ref|YP_003850269.1| - 8.9e-06 25.9 0.0 1.6e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.6 gi|304315122|ref|YP_003850269.1| - 0.023 14.5 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Peptidase_M50 PF02163.22 gi|304315123|ref|YP_003850270.1| - 2.1e-06 27.2 11.3 0.00061 19.1 1.2 3.1 2 1 1 3 3 3 3 Peptidase family M50 UPF0060 PF02694.15 gi|304315123|ref|YP_003850270.1| - 6.1 7.1 10.3 0.39 11.0 4.6 2.0 2 1 1 3 3 3 0 Uncharacterised BCR, YnfA/UPF0060 family YcaO PF02624.16 gi|304315124|ref|YP_003850271.1| - 4.5e-94 315.3 1.9 1.2e-93 314.0 1.4 1.7 2 0 0 2 2 2 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding TfuA PF07812.12 gi|304315125|ref|YP_003850272.1| - 1.4e-42 144.2 0.0 2e-42 143.7 0.0 1.3 1 0 0 1 1 1 1 TfuA-like protein DUF3134 PF11332.8 gi|304315125|ref|YP_003850272.1| - 0.0073 16.6 0.1 0.015 15.6 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3134) MEDS PF14417.6 gi|304315125|ref|YP_003850272.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain QueC PF06508.13 gi|304315126|ref|YP_003850273.1| - 7.5e-05 22.3 0.0 0.0034 16.9 0.0 2.4 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|304315126|ref|YP_003850273.1| - 0.0012 18.9 0.0 0.006 16.6 0.0 2.1 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|304315126|ref|YP_003850273.1| - 0.0026 17.5 0.1 0.3 10.8 0.1 2.5 2 1 0 2 2 2 1 PP-loop family TBP PF00352.21 gi|304315126|ref|YP_003850273.1| - 0.015 15.2 0.3 0.062 13.3 0.0 2.0 2 0 0 2 2 2 0 Transcription factor TFIID (or TATA-binding protein, TBP) Asn_synthase PF00733.21 gi|304315126|ref|YP_003850273.1| - 0.043 13.5 0.0 0.062 13.0 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase SET_assoc PF11767.8 gi|304315126|ref|YP_003850273.1| - 0.16 11.6 0.0 0.43 10.3 0.0 1.7 1 0 0 1 1 1 0 Histone lysine methyltransferase SET associated CBS PF00571.28 gi|304315128|ref|YP_003850275.1| - 2.5e-46 155.9 7.5 3.9e-15 56.0 0.7 4.1 4 0 0 4 4 4 4 CBS domain Usp PF00582.26 gi|304315129|ref|YP_003850276.1| - 7.7e-39 133.4 1.5 8.6e-39 133.3 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|304315129|ref|YP_003850276.1| - 0.023 14.6 0.5 0.69 9.8 0.5 2.2 1 1 0 1 1 1 0 Electron transfer flavoprotein domain SIS PF01380.22 gi|304315129|ref|YP_003850276.1| - 0.097 12.5 0.1 0.26 11.1 0.1 1.6 1 1 1 2 2 2 0 SIS domain DNA_photolyase PF00875.18 gi|304315129|ref|YP_003850276.1| - 0.14 12.2 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase TusA PF01206.17 gi|304315129|ref|YP_003850276.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 Sulfurtransferase TusA Amidohydro_1 PF01979.20 gi|304315130|ref|YP_003850277.1| - 1.3e-47 162.8 0.0 1.5e-47 162.6 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|304315130|ref|YP_003850277.1| - 4.7e-11 42.8 0.4 3.4e-06 26.8 0.0 2.5 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|304315130|ref|YP_003850277.1| - 0.19 11.0 0.0 0.33 10.2 0.0 1.4 1 0 0 1 1 1 0 Adenosine/AMP deaminase PKD PF00801.20 gi|304315131|ref|YP_003850278.1| - 2.4e-12 46.5 1.4 7.8e-12 44.9 1.3 2.0 1 1 0 1 1 1 1 PKD domain CARDB PF07705.11 gi|304315131|ref|YP_003850278.1| - 6.6e-10 39.2 3.4 9.8e-10 38.6 0.4 2.6 3 0 0 3 3 3 1 CARDB UPF0180 PF03698.13 gi|304315131|ref|YP_003850278.1| - 0.02 15.1 0.3 0.072 13.3 0.1 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) CPSase_L_D2 PF02786.17 gi|304315132|ref|YP_003850279.1| - 2.5e-119 396.4 0.1 1.5e-77 259.9 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|304315132|ref|YP_003850279.1| - 9.2e-42 142.2 0.0 2.6e-41 140.8 0.0 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|304315132|ref|YP_003850279.1| - 4.4e-21 75.2 0.0 7e-13 48.5 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain MGS PF02142.22 gi|304315132|ref|YP_003850279.1| - 1.7e-18 66.6 0.1 3.5e-17 62.4 0.0 3.1 2 0 0 2 2 2 1 MGS-like domain Dala_Dala_lig_C PF07478.13 gi|304315132|ref|YP_003850279.1| - 6.1e-18 65.1 0.1 1.2e-07 31.5 0.0 2.9 3 0 0 3 3 3 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|304315132|ref|YP_003850279.1| - 5.7e-14 52.0 0.0 9.6e-06 25.4 0.0 2.8 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|304315132|ref|YP_003850279.1| - 3.3e-10 40.3 0.2 0.00016 21.8 0.1 2.4 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|304315132|ref|YP_003850279.1| - 5.1e-10 39.4 0.0 0.00037 20.3 0.0 2.4 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|304315132|ref|YP_003850279.1| - 3.2e-06 26.7 0.0 0.015 14.7 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.11 gi|304315132|ref|YP_003850279.1| - 0.00012 21.7 0.0 0.18 11.4 0.0 3.3 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.10 gi|304315132|ref|YP_003850279.1| - 0.0039 16.8 0.0 2.7 7.5 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain DUF4176 PF13780.6 gi|304315132|ref|YP_003850279.1| - 0.013 15.5 0.0 10 6.3 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4176) Epimerase PF01370.21 gi|304315132|ref|YP_003850279.1| - 0.068 12.6 0.0 0.39 10.1 0.0 2.1 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Isochorismatase PF00857.20 gi|304315132|ref|YP_003850279.1| - 0.1 12.8 1.4 0.6 10.3 0.1 2.9 5 0 0 5 5 5 0 Isochorismatase family PrpR_N PF06506.11 gi|304315132|ref|YP_003850279.1| - 0.68 9.5 3.0 26 4.3 0.3 3.8 4 0 0 4 4 4 0 Propionate catabolism activator CPSase_sm_chain PF00988.22 gi|304315133|ref|YP_003850280.1| - 2.1e-50 169.8 0.0 3.2e-50 169.2 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|304315133|ref|YP_003850280.1| - 9.4e-44 149.5 0.0 1.2e-43 149.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|304315133|ref|YP_003850280.1| - 6.9e-09 35.8 0.2 5.1e-06 26.4 0.2 2.3 1 1 0 1 1 1 1 Peptidase C26 Acetyltransf_1 PF00583.25 gi|304315134|ref|YP_003850281.1| - 1.5e-22 80.0 0.3 2e-22 79.7 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|304315134|ref|YP_003850281.1| - 8e-19 67.8 0.0 8.9e-19 67.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|304315134|ref|YP_003850281.1| - 7.1e-16 58.4 0.6 9.8e-16 58.0 0.6 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|304315134|ref|YP_003850281.1| - 9.2e-08 32.0 0.0 1.3e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|304315134|ref|YP_003850281.1| - 3.6e-07 30.9 0.1 5.5e-07 30.3 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|304315134|ref|YP_003850281.1| - 4.9e-07 30.0 0.3 8.8e-07 29.2 0.3 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|304315134|ref|YP_003850281.1| - 0.00017 21.7 0.0 0.002 18.2 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|304315134|ref|YP_003850281.1| - 0.0011 19.1 0.0 0.0018 18.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|304315134|ref|YP_003850281.1| - 0.0026 17.5 0.0 0.013 15.2 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|304315134|ref|YP_003850281.1| - 0.0026 17.9 0.0 0.0044 17.1 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|304315134|ref|YP_003850281.1| - 0.086 12.6 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ GNAT_acetyltran PF12746.7 gi|304315134|ref|YP_003850281.1| - 0.15 11.6 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase UPF0146 PF03686.13 gi|304315135|ref|YP_003850282.1| - 1.1e-43 148.2 0.0 1.2e-43 148.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) E1-E2_ATPase PF00122.20 gi|304315136|ref|YP_003850283.1| - 2.1e-53 180.5 1.5 2.1e-53 180.5 1.5 3.3 3 1 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|304315136|ref|YP_003850283.1| - 9.2e-45 152.6 6.1 9.2e-45 152.6 6.1 2.0 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|304315136|ref|YP_003850283.1| - 1.1e-24 88.0 0.2 2.4e-24 86.8 0.2 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|304315136|ref|YP_003850283.1| - 1.6e-21 75.7 0.1 3.9e-21 74.5 0.1 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|304315136|ref|YP_003850283.1| - 1.3e-20 73.3 0.0 4.3e-20 71.6 0.0 2.0 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|304315136|ref|YP_003850283.1| - 1.2e-08 35.0 0.2 1.2e-05 25.2 0.4 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|304315136|ref|YP_003850283.1| - 2.5e-06 28.0 0.3 5.9e-06 26.8 0.3 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CbiJ PF02571.14 gi|304315137|ref|YP_003850284.1| - 2.1e-68 230.3 0.0 2.4e-68 230.1 0.0 1.0 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK Glycos_transf_N PF04413.16 gi|304315137|ref|YP_003850284.1| - 0.16 11.6 0.0 0.32 10.6 0.0 1.5 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MoeA_N PF03453.17 gi|304315138|ref|YP_003850285.1| - 3.6e-42 143.8 0.6 6.3e-42 143.0 0.6 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|304315138|ref|YP_003850285.1| - 4.2e-27 94.6 0.1 6.6e-27 93.9 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|304315138|ref|YP_003850285.1| - 2.1e-18 66.3 0.1 8e-18 64.4 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) eIF-1a PF01176.19 gi|304315139|ref|YP_003850286.1| - 4.8e-23 80.7 0.8 7.2e-23 80.2 0.8 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.22 gi|304315140|ref|YP_003850287.1| - 1.8e-64 216.8 0.0 2.6e-64 216.3 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|304315140|ref|YP_003850287.1| - 0.00097 18.5 0.2 0.069 12.5 0.1 2.1 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|304315140|ref|YP_003850287.1| - 0.0095 15.9 0.8 0.094 12.6 0.1 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family DUF1476 PF07345.11 gi|304315140|ref|YP_003850287.1| - 0.15 12.5 1.0 0.7 10.3 0.1 2.2 2 0 0 2 2 2 0 ATPase inhibitor subunit zeta KH_1 PF00013.29 gi|304315141|ref|YP_003850288.1| - 5.9e-11 42.0 3.1 2e-05 24.3 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|304315141|ref|YP_003850288.1| - 0.00021 21.0 6.9 0.04 13.8 0.5 2.9 2 2 0 2 2 2 2 KH domain BON PF04972.17 gi|304315141|ref|YP_003850288.1| - 0.05 13.9 0.2 1.6 9.1 0.0 2.3 2 0 0 2 2 2 0 BON domain KH_8 PF17903.1 gi|304315141|ref|YP_003850288.1| - 0.084 13.0 0.0 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 Krr1 KH1 domain KH_4 PF13083.6 gi|304315141|ref|YP_003850288.1| - 0.089 12.7 4.5 2 8.4 0.0 2.9 2 1 0 2 2 2 0 KH domain Topo-VIb_trans PF09239.11 gi|304315142|ref|YP_003850289.1| - 2.4e-58 196.5 0.0 3.6e-58 195.9 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|304315142|ref|YP_003850289.1| - 5e-12 46.3 0.2 2.6e-11 44.0 0.0 2.1 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|304315142|ref|YP_003850289.1| - 6.5e-07 29.2 0.0 1.4e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP6A_N PF04406.14 gi|304315143|ref|YP_003850290.1| - 1.3e-14 53.9 0.0 2.2e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Gp_dh_C PF02800.20 gi|304315144|ref|YP_003850291.1| - 1.5e-33 115.6 0.1 2.2e-33 115.1 0.1 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|304315144|ref|YP_003850291.1| - 1e-11 45.0 0.2 2.5e-11 43.7 0.2 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|304315144|ref|YP_003850291.1| - 1.1e-06 28.9 0.3 4.4e-06 27.0 0.1 2.2 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|304315144|ref|YP_003850291.1| - 0.0012 19.1 0.2 0.009 16.3 0.1 2.2 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|304315144|ref|YP_003850291.1| - 0.0013 18.1 0.2 0.015 14.7 0.2 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|304315144|ref|YP_003850291.1| - 0.007 17.2 0.2 0.036 14.9 0.0 2.2 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|304315144|ref|YP_003850291.1| - 0.013 16.2 0.1 0.057 14.1 0.0 2.1 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|304315144|ref|YP_003850291.1| - 0.013 15.4 0.1 0.038 13.9 0.1 1.8 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|304315144|ref|YP_003850291.1| - 0.016 15.5 2.2 0.041 14.1 0.1 2.9 3 1 0 3 3 3 0 TrkA-N domain Semialdhyde_dh PF01118.24 gi|304315144|ref|YP_003850291.1| - 0.04 14.4 0.0 0.082 13.3 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|304315144|ref|YP_003850291.1| - 0.045 14.3 0.3 0.77 10.4 0.1 2.7 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF348 PF03990.14 gi|304315144|ref|YP_003850291.1| - 0.058 13.1 0.2 0.16 11.8 0.2 1.7 1 0 0 1 1 1 0 G5-linked-Ubiquitin-like domain Phos_pyr_kin PF08543.12 gi|304315144|ref|YP_003850291.1| - 0.066 12.6 0.3 0.63 9.4 0.1 2.2 2 0 0 2 2 2 0 Phosphomethylpyrimidine kinase MacB_PCD PF12704.7 gi|304315144|ref|YP_003850291.1| - 0.13 12.6 0.1 1.2 9.5 0.0 2.2 2 0 0 2 2 2 0 MacB-like periplasmic core domain AP_endonuc_2 PF01261.24 gi|304315145|ref|YP_003850292.1| - 7.2e-17 61.5 0.1 9.9e-17 61.1 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Imm9 PF15587.6 gi|304315145|ref|YP_003850292.1| - 0.094 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Immunity protein 9 UvdE PF03851.14 gi|304315145|ref|YP_003850292.1| - 0.14 11.4 0.0 0.42 9.8 0.0 1.6 1 1 1 2 2 2 0 UV-endonuclease UvdE AAA PF00004.29 gi|304315146|ref|YP_003850293.1| - 1.2e-36 126.0 0.0 2.6e-36 124.9 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|304315146|ref|YP_003850293.1| - 3.1e-08 33.5 0.0 2.8e-07 30.4 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_3 PF17862.1 gi|304315146|ref|YP_003850293.1| - 1.2e-07 31.4 0.0 3.8e-07 29.8 0.0 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|304315146|ref|YP_003850293.1| - 1.3e-07 31.9 0.0 3e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|304315146|ref|YP_003850293.1| - 5.1e-06 27.0 0.1 0.0016 18.8 0.0 2.6 2 1 1 3 3 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|304315146|ref|YP_003850293.1| - 7.1e-06 26.3 0.3 0.0049 17.1 0.0 2.8 2 1 0 3 3 3 1 AAA domain TIP49 PF06068.13 gi|304315146|ref|YP_003850293.1| - 3.9e-05 23.0 0.0 0.0001 21.7 0.0 1.6 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|304315146|ref|YP_003850293.1| - 8.9e-05 22.7 0.0 0.00022 21.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_5 PF07728.14 gi|304315146|ref|YP_003850293.1| - 0.00039 20.4 0.3 0.0035 17.3 0.1 2.7 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|304315146|ref|YP_003850293.1| - 0.00087 18.7 0.0 0.0027 17.1 0.0 1.7 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|304315146|ref|YP_003850293.1| - 0.0033 17.4 0.0 0.0086 16.0 0.0 1.7 1 0 0 1 1 1 1 NACHT domain AAA_7 PF12775.7 gi|304315146|ref|YP_003850293.1| - 0.01 15.4 0.0 0.032 13.7 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|304315146|ref|YP_003850293.1| - 0.012 15.4 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|304315146|ref|YP_003850293.1| - 0.012 16.0 0.0 0.028 14.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 gi|304315146|ref|YP_003850293.1| - 0.018 15.3 0.1 0.043 14.1 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_18 PF13238.6 gi|304315146|ref|YP_003850293.1| - 0.018 15.6 0.0 0.039 14.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|304315146|ref|YP_003850293.1| - 0.023 14.6 0.0 0.05 13.5 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Torsin PF06309.11 gi|304315146|ref|YP_003850293.1| - 0.025 14.7 0.0 0.053 13.6 0.0 1.5 1 0 0 1 1 1 0 Torsin DUF2075 PF09848.9 gi|304315146|ref|YP_003850293.1| - 0.039 13.2 0.0 0.11 11.7 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.18 gi|304315146|ref|YP_003850293.1| - 0.049 13.5 0.2 0.36 10.6 0.2 2.0 1 1 0 1 1 1 0 Bacterial dnaA protein TsaE PF02367.17 gi|304315146|ref|YP_003850293.1| - 0.059 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Parvo_NS1 PF01057.17 gi|304315146|ref|YP_003850293.1| - 0.079 12.0 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF815 PF05673.13 gi|304315146|ref|YP_003850293.1| - 0.08 12.1 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|304315146|ref|YP_003850293.1| - 0.08 13.0 0.0 0.24 11.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain Zeta_toxin PF06414.12 gi|304315146|ref|YP_003850293.1| - 0.1 11.9 0.0 0.36 10.1 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.6 gi|304315146|ref|YP_003850293.1| - 0.15 11.6 0.1 0.49 9.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|304315146|ref|YP_003850293.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|304315146|ref|YP_003850293.1| - 0.23 11.2 0.1 0.85 9.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain Shikimate_DH PF01488.20 gi|304315147|ref|YP_003850294.1| - 4.6e-45 153.1 0.1 7.5e-45 152.4 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|304315147|ref|YP_003850294.1| - 3.6e-30 104.7 0.0 1e-29 103.2 0.0 1.8 1 1 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|304315147|ref|YP_003850294.1| - 1.8e-19 69.9 1.1 1.8e-19 69.9 1.1 2.0 2 0 0 2 2 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|304315147|ref|YP_003850294.1| - 6.4e-08 33.1 0.1 3.4e-07 30.8 0.0 2.2 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Glu_dehyd_C PF16912.5 gi|304315147|ref|YP_003850294.1| - 1.3e-05 24.8 0.0 2.2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Sacchrp_dh_NADP PF03435.18 gi|304315147|ref|YP_003850294.1| - 3e-05 24.3 0.1 9.5e-05 22.7 0.1 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|304315147|ref|YP_003850294.1| - 0.00015 22.2 0.0 0.0003 21.2 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding DapB_N PF01113.20 gi|304315147|ref|YP_003850294.1| - 0.00015 21.9 0.0 0.00039 20.6 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.19 gi|304315147|ref|YP_003850294.1| - 0.00016 21.1 0.1 0.0003 20.2 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|304315147|ref|YP_003850294.1| - 0.00037 19.9 0.3 0.0069 15.7 0.2 2.6 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_2 PF03446.15 gi|304315147|ref|YP_003850294.1| - 0.0011 19.1 0.0 0.0023 18.1 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.6 gi|304315147|ref|YP_003850294.1| - 0.0013 18.7 0.3 0.0028 17.6 0.3 1.6 1 1 0 1 1 1 1 NAD(P)H-binding TrkA_N PF02254.18 gi|304315147|ref|YP_003850294.1| - 0.0023 18.2 0.1 0.0054 17.0 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain GFO_IDH_MocA PF01408.22 gi|304315147|ref|YP_003850294.1| - 0.0057 17.5 0.0 0.013 16.3 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.16 gi|304315147|ref|YP_003850294.1| - 0.0064 16.2 0.1 0.034 13.8 0.1 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|304315147|ref|YP_003850294.1| - 0.015 14.9 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|304315147|ref|YP_003850294.1| - 0.032 13.5 0.1 0.053 12.8 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|304315147|ref|YP_003850294.1| - 0.054 13.4 2.3 0.16 11.9 0.1 2.5 3 0 0 3 3 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF4147 PF13660.6 gi|304315147|ref|YP_003850294.1| - 0.069 12.7 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) Gp_dh_N PF00044.24 gi|304315147|ref|YP_003850294.1| - 0.14 12.5 0.1 0.46 10.8 0.1 1.9 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DAO PF01266.24 gi|304315147|ref|YP_003850294.1| - 0.16 11.5 0.5 0.61 9.6 0.0 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase ThiF PF00899.21 gi|304315147|ref|YP_003850294.1| - 0.18 11.1 0.3 0.36 10.1 0.3 1.4 1 0 0 1 1 1 0 ThiF family Asp4 PF16996.5 gi|304315147|ref|YP_003850294.1| - 2.6 7.9 4.9 0.37 10.6 0.2 2.0 2 0 0 2 2 1 0 Accessory secretory protein Sec Asp4 NAD_binding_7 PF13241.6 gi|304315148|ref|YP_003850295.1| - 3e-26 91.9 0.1 1.3e-25 89.8 0.0 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|304315148|ref|YP_003850295.1| - 7.7e-06 25.4 0.1 1.6e-05 24.4 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|304315148|ref|YP_003850295.1| - 2.3e-05 24.0 0.5 0.0019 17.8 0.0 2.3 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain THF_DHG_CYH_C PF02882.19 gi|304315148|ref|YP_003850295.1| - 0.0011 18.3 0.0 0.0024 17.2 0.0 1.5 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.20 gi|304315148|ref|YP_003850295.1| - 0.0034 17.4 3.5 0.0039 17.3 0.5 2.4 2 2 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase CRISPR_Cas2 PF09827.9 gi|304315148|ref|YP_003850295.1| - 0.013 15.6 0.5 0.068 13.4 0.0 2.3 2 1 1 3 3 3 0 CRISPR associated protein Cas2 F420_oxidored PF03807.17 gi|304315148|ref|YP_003850295.1| - 0.015 15.8 0.6 0.084 13.5 0.4 2.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|304315148|ref|YP_003850295.1| - 0.018 15.0 0.7 0.025 14.5 0.2 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|304315148|ref|YP_003850295.1| - 0.021 14.9 0.4 0.067 13.3 0.2 2.0 2 1 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox_3 PF13738.6 gi|304315148|ref|YP_003850295.1| - 0.03 13.6 0.0 0.057 12.7 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ELFV_dehydrog PF00208.21 gi|304315148|ref|YP_003850295.1| - 0.036 13.8 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Rossmann-like PF10727.9 gi|304315148|ref|YP_003850295.1| - 0.065 13.1 0.5 0.28 11.0 0.3 2.2 2 1 0 2 2 2 0 Rossmann-like domain DUF2536 PF10750.9 gi|304315148|ref|YP_003850295.1| - 0.071 13.0 0.2 0.16 11.9 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2536) 2-Hacid_dh PF00389.30 gi|304315148|ref|YP_003850295.1| - 0.074 12.7 0.1 0.99 9.1 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain adh_short PF00106.25 gi|304315148|ref|YP_003850295.1| - 0.085 12.3 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 short chain dehydrogenase TrkA_N PF02254.18 gi|304315148|ref|YP_003850295.1| - 0.16 12.3 1.7 9.3 6.5 0.0 2.6 2 1 1 3 3 3 0 TrkA-N domain GIT_CC PF16559.5 gi|304315149|ref|YP_003850296.1| - 0.0099 15.7 0.3 2.5 8.0 0.1 2.5 3 0 0 3 3 3 2 GIT coiled-coil Rho guanine nucleotide exchange factor FliJ PF02050.16 gi|304315149|ref|YP_003850296.1| - 0.037 14.3 0.0 0.049 13.9 0.0 1.1 1 0 0 1 1 1 0 Flagellar FliJ protein HTH_3 PF01381.22 gi|304315149|ref|YP_003850296.1| - 0.05 13.7 0.0 0.15 12.1 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix GntR PF00392.21 gi|304315149|ref|YP_003850296.1| - 0.16 11.6 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family ABC_tran PF00005.27 gi|304315150|ref|YP_003850297.1| - 2.9e-52 176.8 0.0 6.3e-25 88.3 0.0 2.3 2 0 0 2 2 2 2 ABC transporter RsgA_GTPase PF03193.16 gi|304315150|ref|YP_003850297.1| - 1.3e-06 28.4 0.5 0.002 18.1 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase SMC_N PF02463.19 gi|304315150|ref|YP_003850297.1| - 2.6e-06 27.0 1.7 0.2 11.0 0.0 3.5 3 1 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|304315150|ref|YP_003850297.1| - 2.9e-06 27.3 2.6 1.2 8.8 0.1 4.1 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|304315150|ref|YP_003850297.1| - 0.00043 20.6 0.7 0.25 11.6 0.0 2.9 3 0 0 3 3 3 1 AAA domain MMR_HSR1 PF01926.23 gi|304315150|ref|YP_003850297.1| - 0.0005 20.1 2.9 0.24 11.5 0.1 3.2 4 0 0 4 4 4 2 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|304315150|ref|YP_003850297.1| - 0.00072 19.2 0.8 0.22 11.3 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|304315150|ref|YP_003850297.1| - 0.0048 16.6 0.2 3.8 7.2 0.1 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|304315150|ref|YP_003850297.1| - 0.0068 16.8 1.4 2.6 8.4 0.0 3.0 3 1 0 3 3 3 1 AAA ATPase domain MeaB PF03308.16 gi|304315150|ref|YP_003850297.1| - 0.014 14.4 0.9 0.19 10.7 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP-synt_ab PF00006.25 gi|304315150|ref|YP_003850297.1| - 0.018 14.7 0.0 2.9 7.5 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain SbcCD_C PF13558.6 gi|304315150|ref|YP_003850297.1| - 0.02 15.1 0.0 4 7.8 0.0 3.2 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|304315150|ref|YP_003850297.1| - 0.02 15.0 0.0 0.45 10.7 0.0 2.6 3 0 0 3 3 2 0 AAA domain MobB PF03205.14 gi|304315150|ref|YP_003850297.1| - 0.025 14.5 0.9 1.6 8.6 0.1 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 gi|304315150|ref|YP_003850297.1| - 0.034 13.7 2.0 5.4 6.6 0.0 3.6 4 1 0 5 5 4 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 gi|304315150|ref|YP_003850297.1| - 0.036 13.2 3.5 2.4 7.2 0.3 2.4 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.6 gi|304315150|ref|YP_003850297.1| - 0.037 14.5 1.6 5.8 7.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|304315150|ref|YP_003850297.1| - 0.086 13.4 0.3 4.6 7.8 0.2 2.6 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|304315150|ref|YP_003850297.1| - 0.096 11.9 0.0 16 4.7 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin AAA_PrkA PF08298.11 gi|304315150|ref|YP_003850297.1| - 0.12 11.2 0.0 0.43 9.4 0.0 1.8 2 0 0 2 2 2 0 PrkA AAA domain DUF87 PF01935.17 gi|304315150|ref|YP_003850297.1| - 0.13 12.4 2.8 3.9 7.5 0.0 2.6 3 0 0 3 3 2 0 Helicase HerA, central domain IIGP PF05049.13 gi|304315150|ref|YP_003850297.1| - 0.2 10.7 0.1 0.45 9.5 0.1 1.5 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) PIF1 PF05970.14 gi|304315150|ref|YP_003850297.1| - 0.21 10.7 0.2 19 4.2 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase AAA_13 PF13166.6 gi|304315150|ref|YP_003850297.1| - 0.36 9.4 0.1 2.5 6.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Dus PF01207.17 gi|304315151|ref|YP_003850298.1| - 5.5e-16 58.5 0.0 7.6e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|304315151|ref|YP_003850298.1| - 0.00042 19.8 0.1 0.001 18.6 0.1 1.7 1 1 0 1 1 1 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|304315151|ref|YP_003850298.1| - 0.035 13.1 0.4 0.062 12.3 0.2 1.6 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain PE PF00934.20 gi|304315151|ref|YP_003850298.1| - 0.047 14.0 0.7 0.23 11.8 0.7 2.0 2 0 0 2 2 2 0 PE family GCH_III PF05165.12 gi|304315152|ref|YP_003850299.1| - 1.1e-127 424.4 0.1 1.4e-127 424.1 0.1 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III UPF0052 PF01933.18 gi|304315153|ref|YP_003850300.1| - 1.2e-43 149.5 0.0 1.3e-43 149.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 VWA_3_C PF18571.1 gi|304315153|ref|YP_003850300.1| - 0.051 13.4 0.7 0.13 12.1 0.7 1.6 1 0 0 1 1 1 0 von Willebrand factor type A C-terminal domain F420_ligase PF01996.16 gi|304315154|ref|YP_003850301.1| - 1.3e-67 227.7 0.3 1.6e-67 227.4 0.3 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase IMP_cyclohyd PF07826.11 gi|304315155|ref|YP_003850302.1| - 7.9e-65 218.0 0.0 9.1e-65 217.8 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein ExbD PF02472.16 gi|304315156|ref|YP_003850303.1| - 8.1e-06 26.0 1.9 1.5e-05 25.2 1.9 1.6 1 1 0 1 1 1 1 Biopolymer transport protein ExbD/TolR DUF3341 PF11821.8 gi|304315156|ref|YP_003850303.1| - 0.035 13.8 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3341) MotA_ExbB PF01618.16 gi|304315157|ref|YP_003850304.1| - 5.9e-31 106.9 3.5 2.2e-30 105.0 1.0 2.7 2 2 1 3 3 3 1 MotA/TolQ/ExbB proton channel family DUF421 PF04239.12 gi|304315157|ref|YP_003850304.1| - 0.062 13.1 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF421) RNase_HII PF01351.18 gi|304315158|ref|YP_003850305.1| - 9.9e-67 224.6 0.1 1.1e-66 224.4 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII MreB_Mbl PF06723.13 gi|304315159|ref|YP_003850306.1| - 1e-105 353.2 19.4 1.2e-105 353.0 19.4 1.0 1 0 0 1 1 1 1 MreB/Mbl protein HSP70 PF00012.20 gi|304315159|ref|YP_003850306.1| - 7.7e-18 64.0 8.4 3.9e-16 58.4 5.9 2.0 1 1 0 2 2 2 2 Hsp70 protein Actin PF00022.19 gi|304315159|ref|YP_003850306.1| - 3.7e-13 48.9 0.6 5.4e-06 25.3 0.1 2.1 1 1 1 2 2 2 2 Actin FtsA PF14450.6 gi|304315159|ref|YP_003850306.1| - 6.4e-10 39.4 1.5 6.4e-10 39.4 1.5 2.1 2 1 0 2 2 2 1 Cell division protein FtsA PG_isomerase_N PF18353.1 gi|304315159|ref|YP_003850306.1| - 0.11 12.9 0.6 1.6 9.2 0.3 2.4 2 0 0 2 2 2 0 Phosphoglucose isomerase N-terminal domain PS_Dcarbxylase PF02666.15 gi|304315161|ref|YP_003850308.1| - 2.7e-38 131.5 0.1 3.3e-38 131.3 0.1 1.1 1 0 0 1 1 1 1 Phosphatidylserine decarboxylase Peptidase_M23 PF01551.22 gi|304315161|ref|YP_003850308.1| - 0.077 13.2 0.3 0.23 11.7 0.2 1.8 2 0 0 2 2 2 0 Peptidase family M23 CDP-OH_P_transf PF01066.21 gi|304315162|ref|YP_003850309.1| - 2e-11 44.5 0.7 2e-11 44.5 0.7 3.2 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF4267 PF14087.6 gi|304315162|ref|YP_003850309.1| - 1.5 8.9 11.5 0.12 12.5 0.4 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4267) DUF515 PF04415.12 gi|304315163|ref|YP_003850310.1| - 5.9e-25 87.6 1.6 1e-11 43.9 0.0 3.0 1 1 2 3 3 3 3 Protein of unknown function (DUF515) RcpC PF16976.5 gi|304315163|ref|YP_003850310.1| - 2.5e-08 34.0 2.7 6.2e-08 32.7 1.9 2.2 2 0 0 2 2 2 1 Flp pilus assembly protein RcpC/CpaB Sortase PF04203.13 gi|304315165|ref|YP_003850312.1| - 1.1e-16 60.8 0.0 1.4e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 Sortase domain Wzz PF02706.15 gi|304315165|ref|YP_003850312.1| - 0.73 10.2 2.2 9.4 6.6 0.1 2.6 2 1 0 2 2 2 0 Chain length determinant protein DHNA PF04038.12 gi|304315166|ref|YP_003850313.1| - 2.9e-41 140.4 0.0 3.2e-41 140.2 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Fer4 PF00037.27 gi|304315167|ref|YP_003850314.1| - 4e-13 48.6 13.9 4.1e-07 29.5 2.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304315167|ref|YP_003850314.1| - 8.9e-10 38.5 22.9 8.5e-08 32.2 11.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304315167|ref|YP_003850314.1| - 1.1e-09 37.8 9.7 3.5e-05 23.6 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|304315167|ref|YP_003850314.1| - 1.7e-09 37.7 21.0 2.9e-07 30.5 9.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304315167|ref|YP_003850314.1| - 2e-08 34.7 8.2 2.6e-08 34.3 8.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304315167|ref|YP_003850314.1| - 2.2e-08 33.8 13.1 0.00063 19.7 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304315167|ref|YP_003850314.1| - 5.9e-08 32.7 12.5 0.00022 21.3 3.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304315167|ref|YP_003850314.1| - 5.7e-06 26.7 5.6 0.0031 17.9 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304315167|ref|YP_003850314.1| - 8.3e-06 26.3 12.1 0.0021 18.6 1.7 2.1 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|304315167|ref|YP_003850314.1| - 8.3e-06 26.6 11.8 0.0088 17.0 2.8 2.1 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|304315167|ref|YP_003850314.1| - 1.2e-05 25.4 11.6 0.015 15.8 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|304315167|ref|YP_003850314.1| - 0.0016 19.2 11.2 0.015 16.0 0.5 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|304315167|ref|YP_003850314.1| - 0.0017 18.5 4.1 0.0036 17.4 4.1 1.5 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_17 PF13534.6 gi|304315167|ref|YP_003850314.1| - 0.002 18.6 13.3 0.22 12.1 13.7 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|304315167|ref|YP_003850314.1| - 0.0078 17.0 6.6 0.84 10.5 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304315167|ref|YP_003850314.1| - 0.11 13.5 15.8 1.5 10.0 3.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|304315167|ref|YP_003850314.1| - 0.11 12.7 9.2 1.3 9.3 1.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|304315168|ref|YP_003850315.1| - 1.7e-82 276.6 0.0 2.2e-82 276.3 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|304315168|ref|YP_003850315.1| - 3.8e-22 78.5 0.1 6.2e-22 77.8 0.1 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|304315168|ref|YP_003850315.1| - 2e-07 30.9 0.0 4.3e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|304315168|ref|YP_003850315.1| - 0.00083 19.0 0.1 0.0015 18.2 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|304315169|ref|YP_003850316.1| - 4.5e-34 117.5 0.0 7.2e-34 116.8 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR PF01558.18 gi|304315170|ref|YP_003850317.1| - 5.5e-38 130.8 1.1 6.4e-38 130.6 1.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TrmE_N PF10396.9 gi|304315170|ref|YP_003850317.1| - 0.023 15.0 0.0 0.031 14.6 0.0 1.3 1 0 0 1 1 1 0 GTP-binding protein TrmE N-terminus ATP-grasp_2 PF08442.10 gi|304315171|ref|YP_003850318.1| - 9.9e-69 231.0 0.0 1.7e-68 230.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|304315171|ref|YP_003850318.1| - 3.3e-18 65.9 0.2 5.4e-18 65.3 0.2 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|304315171|ref|YP_003850318.1| - 5.9e-14 52.1 1.7 5.6e-13 48.9 0.5 2.6 2 1 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.19 gi|304315171|ref|YP_003850318.1| - 2.2e-06 27.6 0.1 3.4e-06 27.0 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.17 gi|304315171|ref|YP_003850318.1| - 7.8e-05 22.3 0.5 0.00016 21.3 0.3 1.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|304315171|ref|YP_003850318.1| - 0.0097 15.5 0.1 0.017 14.7 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Peripla_BP_3 PF13377.6 gi|304315171|ref|YP_003850318.1| - 0.051 13.9 0.1 0.56 10.5 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein-like domain CO_dh PF02552.16 gi|304315172|ref|YP_003850319.1| - 3.4e-36 124.6 0.0 3.9e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit BET PF17035.5 gi|304315172|ref|YP_003850319.1| - 0.0082 16.3 0.1 0.1 12.8 0.0 2.2 2 0 0 2 2 2 1 Bromodomain extra-terminal - transcription regulation TPP_enzyme_M PF00205.22 gi|304315172|ref|YP_003850319.1| - 0.027 14.2 0.1 0.16 11.7 0.1 2.3 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.20 gi|304315173|ref|YP_003850320.1| - 1.3e-52 179.2 8.4 9.3e-39 133.5 0.3 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family DUF1451 PF07295.11 gi|304315173|ref|YP_003850320.1| - 0.044 13.8 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Zinc-ribbon containing domain Hpr_kinase_N PF02603.16 gi|304315173|ref|YP_003850320.1| - 0.11 12.6 0.1 26 4.8 0.0 3.1 2 1 1 3 3 3 0 HPr Serine kinase N terminus Prismane PF03063.20 gi|304315174|ref|YP_003850321.1| - 3.3e-31 108.6 0.6 3.7e-31 108.4 0.6 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Fer4_10 PF13237.6 gi|304315174|ref|YP_003850321.1| - 6.9e-10 38.9 40.6 1.4e-06 28.3 11.8 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304315174|ref|YP_003850321.1| - 7.7e-07 29.2 7.5 7.7e-07 29.2 7.5 2.5 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304315174|ref|YP_003850321.1| - 1.5e-06 28.7 20.4 3.6e-06 27.4 11.0 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|304315174|ref|YP_003850321.1| - 4.6e-06 26.2 3.4 4.6e-06 26.2 3.4 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304315174|ref|YP_003850321.1| - 1.3e-05 25.5 22.7 0.00014 22.3 11.4 3.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304315174|ref|YP_003850321.1| - 2.2e-05 24.9 17.8 0.0054 17.2 0.3 3.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304315174|ref|YP_003850321.1| - 0.00023 21.1 26.5 0.00045 20.2 4.0 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304315174|ref|YP_003850321.1| - 0.00045 20.1 25.6 0.0022 18.0 2.2 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304315174|ref|YP_003850321.1| - 0.0012 18.9 10.4 0.0012 18.9 10.4 2.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304315174|ref|YP_003850321.1| - 0.0063 17.4 0.3 0.0063 17.4 0.3 3.5 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|304315174|ref|YP_003850321.1| - 0.022 15.6 7.1 0.022 15.6 7.1 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|304315174|ref|YP_003850321.1| - 0.032 14.8 4.1 0.032 14.8 4.1 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|304315174|ref|YP_003850321.1| - 0.48 10.6 16.4 0.77 10.0 2.0 3.0 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|304315174|ref|YP_003850321.1| - 1.8 9.4 22.6 0.3 12.0 5.0 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|304315176|ref|YP_003850323.1| - 1e-13 50.5 34.8 2e-07 30.5 8.3 5.9 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304315176|ref|YP_003850323.1| - 1.9e-12 46.5 29.3 1.6e-06 27.8 3.0 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304315176|ref|YP_003850323.1| - 2e-09 37.1 39.7 8e-07 28.9 6.9 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_11 PF13247.6 gi|304315176|ref|YP_003850323.1| - 2.3e-08 34.0 11.1 2.3e-08 34.0 11.1 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304315176|ref|YP_003850323.1| - 2.6e-08 34.3 29.1 0.0024 18.4 24.0 3.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304315176|ref|YP_003850323.1| - 1.3e-07 31.6 29.0 0.00051 20.1 12.1 3.3 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304315176|ref|YP_003850323.1| - 2.3e-06 27.6 32.5 0.00052 20.1 13.0 3.1 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304315176|ref|YP_003850323.1| - 7e-06 26.6 43.2 0.19 12.7 8.9 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304315176|ref|YP_003850323.1| - 0.0001 22.3 11.6 0.0001 22.3 11.6 3.6 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304315176|ref|YP_003850323.1| - 0.0016 19.3 30.9 0.23 12.4 8.1 4.3 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|304315176|ref|YP_003850323.1| - 0.01 16.3 15.5 0.03 14.8 5.1 5.0 4 2 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|304315176|ref|YP_003850323.1| - 0.052 14.1 18.6 0.077 13.5 3.6 3.4 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|304315176|ref|YP_003850323.1| - 0.33 11.7 0.4 0.33 11.7 0.4 3.3 3 1 1 4 4 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|304315176|ref|YP_003850323.1| - 0.35 11.5 34.0 0.17 12.4 4.6 4.5 3 2 1 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|304315176|ref|YP_003850323.1| - 0.93 9.7 24.9 0.29 11.3 1.3 2.8 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304315176|ref|YP_003850323.1| - 3.6 8.1 32.1 74 3.9 11.9 4.0 2 2 0 2 2 2 0 4Fe-4S dicluster domain DUF2243 PF10002.9 gi|304315177|ref|YP_003850324.1| - 0.06 13.4 0.8 0.06 13.4 0.8 3.2 3 2 1 4 4 4 0 Predicted membrane protein (DUF2243) DUF1002 PF06207.11 gi|304315178|ref|YP_003850325.1| - 2.7e-56 190.6 8.9 3.1e-56 190.4 8.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1002) SpoVIF PF14069.6 gi|304315178|ref|YP_003850325.1| - 0.0011 18.7 3.5 0.0025 17.5 3.5 1.6 1 0 0 1 1 1 1 Stage VI sporulation protein F Muted PF14942.6 gi|304315178|ref|YP_003850325.1| - 0.011 16.1 2.1 0.019 15.3 2.1 1.3 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein FliL PF03748.14 gi|304315178|ref|YP_003850325.1| - 0.034 14.7 1.2 0.19 12.3 0.0 2.5 1 1 1 2 2 2 0 Flagellar basal body-associated protein FliL Cu_bind_CorA PF18252.1 gi|304315178|ref|YP_003850325.1| - 0.1 12.2 0.7 0.36 10.4 0.0 2.1 2 1 0 2 2 2 0 Copper(I)-binding protein CorA DUF2624 PF11116.8 gi|304315178|ref|YP_003850325.1| - 0.12 13.3 3.5 0.22 12.4 0.9 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2624) Wyosine_form PF08608.12 gi|304315179|ref|YP_003850326.1| - 7.2e-24 83.9 0.1 3.2e-22 78.6 0.0 2.5 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.21 gi|304315179|ref|YP_003850326.1| - 1.4e-15 58.1 0.0 8.2e-15 55.6 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Transglut_core PF01841.19 gi|304315180|ref|YP_003850327.1| - 4.3e-06 27.1 0.4 4.3e-06 27.1 0.4 2.4 1 1 1 2 2 2 1 Transglutaminase-like superfamily FliL PF03748.14 gi|304315180|ref|YP_003850327.1| - 0.044 14.4 0.1 0.097 13.3 0.0 1.5 1 1 0 1 1 1 0 Flagellar basal body-associated protein FliL TIM PF00121.18 gi|304315181|ref|YP_003850328.1| - 9.7e-10 38.2 0.0 1.6e-09 37.5 0.0 1.3 1 1 0 1 1 1 1 Triosephosphate isomerase NMO PF03060.15 gi|304315181|ref|YP_003850328.1| - 3.1e-05 23.5 7.0 7.7e-05 22.2 0.6 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|304315181|ref|YP_003850328.1| - 0.00062 18.9 0.2 0.0013 17.8 0.2 1.5 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.14 gi|304315181|ref|YP_003850328.1| - 0.001 18.5 4.4 0.0018 17.6 0.3 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|304315181|ref|YP_003850328.1| - 0.036 13.5 0.1 0.13 11.7 0.0 1.9 2 0 0 2 2 2 0 Histidine biosynthesis protein IGPS PF00218.21 gi|304315181|ref|YP_003850328.1| - 0.068 12.3 0.0 0.15 11.2 0.0 1.6 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase Glu_synthase PF01645.17 gi|304315181|ref|YP_003850328.1| - 0.09 11.9 3.6 0.056 12.6 0.6 2.1 1 1 1 2 2 2 0 Conserved region in glutamate synthase PGK PF00162.19 gi|304315182|ref|YP_003850329.1| - 1.3e-114 383.1 0.0 1.5e-114 382.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase RNA_pol_Rpb5_C PF01191.19 gi|304315183|ref|YP_003850330.1| - 9e-33 112.0 0.8 9.8e-33 111.9 0.8 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|304315184|ref|YP_003850331.1| - 8.1e-53 179.0 0.1 9.8e-53 178.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.16 gi|304315184|ref|YP_003850331.1| - 1.1e-26 92.8 0.0 2.2e-26 91.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|304315184|ref|YP_003850331.1| - 4.7e-25 88.3 1.3 8.8e-25 87.4 1.3 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_6 PF00562.28 gi|304315185|ref|YP_003850332.1| - 1.1e-135 452.7 0.0 1.4e-135 452.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|304315185|ref|YP_003850332.1| - 3.5e-31 107.4 1.6 1.4e-30 105.5 0.1 2.3 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|304315185|ref|YP_003850332.1| - 1.8e-22 79.4 0.1 3.6e-22 78.4 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|304315185|ref|YP_003850332.1| - 5.5e-14 52.5 4.5 5.5e-14 52.5 4.5 2.4 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.9 gi|304315185|ref|YP_003850332.1| - 0.002 18.4 0.6 0.042 14.1 0.4 2.8 2 0 0 2 2 2 1 RNA polymerase beta subunit external 1 domain Auto_anti-p27 PF06677.12 gi|304315185|ref|YP_003850332.1| - 0.073 13.2 1.3 0.15 12.2 1.3 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_Rpb1_1 PF04997.12 gi|304315186|ref|YP_003850333.1| - 7.3e-104 347.4 32.4 4e-63 213.6 1.0 3.3 1 1 1 3 3 3 2 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|304315186|ref|YP_003850333.1| - 1.4e-72 243.3 0.1 1.4e-72 243.3 0.1 2.3 3 0 0 3 3 2 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|304315186|ref|YP_003850333.1| - 9e-36 123.2 7.6 3.9e-35 121.1 0.0 3.3 2 1 0 2 2 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|304315186|ref|YP_003850333.1| - 3.7e-33 113.7 0.0 3.7e-33 113.7 0.0 4.5 2 1 2 4 4 3 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|304315186|ref|YP_003850333.1| - 4.3e-25 88.7 0.0 4.3e-25 88.7 0.0 3.1 2 1 1 3 3 2 1 RNA polymerase Rpb1, domain 5 Mor PF08765.11 gi|304315186|ref|YP_003850333.1| - 0.00062 19.7 1.8 12 6.0 0.1 4.3 3 0 0 3 3 3 0 Mor transcription activator family DUF2316 PF10078.9 gi|304315186|ref|YP_003850333.1| - 0.0087 16.3 3.1 0.0087 16.3 3.1 3.8 2 1 2 4 4 3 1 Uncharacterized protein conserved in bacteria (DUF2316) DUF2802 PF10975.8 gi|304315186|ref|YP_003850333.1| - 0.021 15.0 4.8 10 6.3 0.0 4.4 4 0 0 4 4 4 0 Protein of unknown function (DUF2802) DnaI_N PF07319.11 gi|304315186|ref|YP_003850333.1| - 0.024 15.3 0.4 0.024 15.3 0.4 4.2 3 1 0 3 3 3 0 Primosomal protein DnaI N-terminus DUF3659 PF12396.8 gi|304315186|ref|YP_003850333.1| - 0.03 14.2 0.2 0.03 14.2 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) RFC1 PF08519.12 gi|304315186|ref|YP_003850333.1| - 0.19 11.9 25.0 0.088 13.0 4.0 5.2 3 1 3 6 6 6 0 Replication factor RFC1 C terminal domain AAA_lid_7 PF17867.1 gi|304315186|ref|YP_003850333.1| - 0.23 11.7 1.2 3.8 7.7 0.2 3.3 3 1 0 3 3 3 0 Midasin AAA lid domain CheZ PF04344.13 gi|304315186|ref|YP_003850333.1| - 0.54 10.1 17.4 0.27 11.1 5.9 3.7 2 1 2 4 4 4 0 Chemotaxis phosphatase, CheZ Period_C PF12114.8 gi|304315186|ref|YP_003850333.1| - 0.64 9.6 2.4 1 8.9 0.6 2.1 1 1 1 2 2 2 0 Period protein 2/3C-terminal region TraB PF01963.17 gi|304315186|ref|YP_003850333.1| - 1.3 8.9 9.1 1.5 8.7 0.1 2.8 2 1 0 2 2 2 0 TraB family SLATT_1 PF18181.1 gi|304315186|ref|YP_003850333.1| - 1.4 8.9 3.3 50 3.9 0.0 3.7 4 0 0 4 4 4 0 SMODS and SLOG-associating 2TM effector domain 1 HTH_37 PF13744.6 gi|304315186|ref|YP_003850333.1| - 1.6 8.7 11.3 6.9 6.7 0.1 5.0 3 1 2 5 5 5 0 Helix-turn-helix domain Ribosomal_L22 PF00237.19 gi|304315186|ref|YP_003850333.1| - 2 8.7 12.0 1.3 9.3 0.7 3.3 3 0 0 3 3 3 0 Ribosomal protein L22p/L17e HTH_DeoR PF08220.12 gi|304315186|ref|YP_003850333.1| - 5.7 6.8 7.1 0.89 9.4 0.2 3.2 4 0 0 4 4 3 0 DeoR-like helix-turn-helix domain RNA_pol_Rpb1_5 PF04998.17 gi|304315187|ref|YP_003850334.1| - 1.4e-56 191.9 1.0 1.8e-56 191.6 1.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 SLC12 PF03522.15 gi|304315187|ref|YP_003850334.1| - 0.03 13.3 0.6 0.053 12.5 0.6 1.3 1 0 0 1 1 1 0 Solute carrier family 12 RNA_pol_Rpb1_7 PF04990.12 gi|304315187|ref|YP_003850334.1| - 0.032 14.2 0.4 0.78 9.7 0.2 2.7 2 0 0 2 2 2 0 RNA polymerase Rpb1, domain 7 SAM_LFY PF01698.16 gi|304315187|ref|YP_003850334.1| - 0.1 12.5 2.4 24 5.0 0.1 3.8 3 0 0 3 3 3 0 Floricaula / Leafy protein SAM domain Histone_HNS PF00816.21 gi|304315187|ref|YP_003850334.1| - 0.21 12.4 5.5 0.87 10.4 0.3 3.2 3 0 0 3 3 3 0 H-NS histone family Ribosomal_L7Ae PF01248.26 gi|304315188|ref|YP_003850335.1| - 5e-21 74.3 0.0 5.3e-21 74.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|304315189|ref|YP_003850336.1| - 3.5e-20 71.6 6.6 2.1e-14 53.1 0.2 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|304315189|ref|YP_003850336.1| - 8.1e-14 51.5 3.8 1.4e-13 50.7 0.4 2.4 2 1 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|304315189|ref|YP_003850336.1| - 1e-06 28.5 1.1 0.0031 17.3 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|304315189|ref|YP_003850336.1| - 0.0016 18.3 5.4 0.34 10.8 5.2 2.7 1 1 0 1 1 1 1 KH domain CinA_KH PF18146.1 gi|304315189|ref|YP_003850336.1| - 0.0036 17.4 0.1 0.01 16.0 0.0 1.7 2 0 0 2 2 2 1 Damage-inducible protein CinA KH domain Ribosom_S12_S23 PF00164.25 gi|304315190|ref|YP_003850337.1| - 8.7e-50 167.1 0.4 1.1e-49 166.8 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|304315191|ref|YP_003850338.1| - 4e-43 146.6 6.0 4.9e-43 146.3 6.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Bestrophin PF01062.21 gi|304315191|ref|YP_003850338.1| - 0.0084 15.5 0.2 0.013 14.9 0.2 1.4 2 0 0 2 2 2 1 Bestrophin, RFP-TM, chloride channel GTP_EFTU PF00009.27 gi|304315192|ref|YP_003850339.1| - 3.6e-66 222.4 0.1 6.2e-66 221.6 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|304315192|ref|YP_003850339.1| - 1.1e-27 96.2 0.2 3.8e-27 94.5 0.2 2.1 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|304315192|ref|YP_003850339.1| - 5.3e-24 84.1 0.2 2.1e-23 82.1 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|304315192|ref|YP_003850339.1| - 1.1e-23 83.1 0.5 2.8e-23 81.8 0.5 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|304315192|ref|YP_003850339.1| - 4.6e-14 52.6 1.7 1.4e-13 51.0 1.7 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|304315192|ref|YP_003850339.1| - 0.0019 18.3 0.0 0.0044 17.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP-synt_F6 PF05511.11 gi|304315192|ref|YP_003850339.1| - 0.027 14.9 0.1 0.35 11.3 0.0 2.8 3 0 0 3 3 3 0 Mitochondrial ATP synthase coupling factor 6 RsgA_GTPase PF03193.16 gi|304315192|ref|YP_003850339.1| - 0.2 11.5 0.5 0.56 10.1 0.2 1.8 2 0 0 2 2 2 0 RsgA GTPase GTP_EFTU PF00009.27 gi|304315193|ref|YP_003850340.1| - 2.3e-59 200.2 0.3 3.4e-59 199.7 0.3 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|304315193|ref|YP_003850340.1| - 1.3e-37 128.6 0.2 3.8e-37 127.0 0.2 1.8 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|304315193|ref|YP_003850340.1| - 2.3e-16 59.9 1.5 5.7e-16 58.7 1.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|304315193|ref|YP_003850340.1| - 2.2e-07 30.9 0.0 7.4e-07 29.3 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|304315193|ref|YP_003850340.1| - 0.00024 21.0 0.3 0.11 12.4 0.2 2.3 1 1 1 2 2 2 2 RsgA GTPase GTP_EFTU_D4 PF14578.6 gi|304315193|ref|YP_003850340.1| - 0.00059 19.7 1.7 0.0017 18.2 1.7 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 FeoB_N PF02421.18 gi|304315193|ref|YP_003850340.1| - 0.0015 18.1 0.7 0.019 14.5 0.3 2.6 2 1 0 2 2 2 1 Ferrous iron transport protein B SRPRB PF09439.10 gi|304315193|ref|YP_003850340.1| - 0.0015 18.0 0.2 0.0055 16.2 0.2 1.9 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Gtr1_RagA PF04670.12 gi|304315193|ref|YP_003850340.1| - 0.0032 16.9 0.1 0.024 14.0 0.1 2.0 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region Septin PF00735.18 gi|304315193|ref|YP_003850340.1| - 0.0061 15.9 0.0 0.01 15.1 0.0 1.3 1 0 0 1 1 1 1 Septin G-alpha PF00503.20 gi|304315193|ref|YP_003850340.1| - 0.0061 15.8 0.1 1.1 8.3 0.0 2.3 1 1 1 2 2 2 2 G-protein alpha subunit Dynamin_N PF00350.23 gi|304315193|ref|YP_003850340.1| - 0.14 12.2 0.0 13 5.8 0.0 2.5 1 1 1 2 2 2 0 Dynamin family Ribosomal_S10 PF00338.22 gi|304315194|ref|YP_003850341.1| - 9.5e-27 93.1 0.0 1.1e-26 92.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|304315194|ref|YP_003850341.1| - 0.028 15.2 0.0 0.055 14.3 0.0 1.5 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain MtrA PF04208.14 gi|304315195|ref|YP_003850342.1| - 1.7e-79 265.4 0.3 2.1e-79 265.2 0.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A TetR_N PF00440.23 gi|304315196|ref|YP_003850343.1| - 6e-20 70.8 1.0 1.1e-19 70.0 1.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_29 PF17938.1 gi|304315196|ref|YP_003850343.1| - 2.5e-05 24.3 0.0 5.5e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|304315196|ref|YP_003850343.1| - 0.00025 21.3 0.0 0.00051 20.3 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|304315196|ref|YP_003850343.1| - 0.0028 17.8 0.1 0.0047 17.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase TetR_C_21 PF17926.1 gi|304315196|ref|YP_003850343.1| - 0.0093 16.1 0.4 0.022 14.9 0.0 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain Blt1_C PF17183.4 gi|304315196|ref|YP_003850343.1| - 0.053 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Get5 carboxyl domain NYN PF01936.18 gi|304315197|ref|YP_003850344.1| - 5.1e-18 66.0 0.0 6.2e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 NYN domain Usp PF00582.26 gi|304315198|ref|YP_003850345.1| - 4.6e-31 108.2 0.1 5.3e-31 108.0 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family PAS_5 PF07310.13 gi|304315198|ref|YP_003850345.1| - 0.014 15.2 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 PAS domain DXP_reductoisom PF02670.16 gi|304315198|ref|YP_003850345.1| - 0.073 13.8 0.0 0.1 13.3 0.0 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DUF5085 PF16895.5 gi|304315199|ref|YP_003850346.1| - 0.00031 21.1 0.1 0.00072 19.9 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF5085) GyrI-like PF06445.15 gi|304315199|ref|YP_003850346.1| - 0.00056 20.2 0.1 0.0021 18.4 0.1 1.8 1 1 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|304315199|ref|YP_003850346.1| - 0.0035 17.5 0.2 0.0046 17.1 0.2 1.2 1 0 0 1 1 1 1 Integron-associated effector binding protein Sigma70_r1_1 PF03979.14 gi|304315199|ref|YP_003850346.1| - 0.19 11.8 1.8 2.9 8.0 0.1 2.3 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 SepSecS PF05889.13 gi|304315200|ref|YP_003850347.1| - 2.5e-39 135.1 0.0 3.3e-39 134.7 0.0 1.1 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|304315200|ref|YP_003850347.1| - 2.5e-17 62.9 0.0 4.4e-17 62.1 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|304315200|ref|YP_003850347.1| - 4.3e-11 42.6 0.0 7e-11 41.9 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|304315200|ref|YP_003850347.1| - 1.9e-06 27.5 0.1 2.8e-06 26.9 0.1 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|304315200|ref|YP_003850347.1| - 2.1e-05 23.4 0.0 7.1e-05 21.7 0.0 1.7 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Beta_elim_lyase PF01212.21 gi|304315200|ref|YP_003850347.1| - 0.00058 19.2 0.0 0.00083 18.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.19 gi|304315200|ref|YP_003850347.1| - 0.017 13.9 0.0 0.026 13.2 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Cys_Met_Meta_PP PF01053.20 gi|304315200|ref|YP_003850347.1| - 0.027 13.0 0.0 0.047 12.2 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme NTPase_1 PF03266.15 gi|304315201|ref|YP_003850348.1| - 6e-55 185.7 0.1 6.7e-55 185.5 0.1 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|304315201|ref|YP_003850348.1| - 2.5e-08 33.7 0.0 3.2e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_17 PF13207.6 gi|304315201|ref|YP_003850348.1| - 3.3e-06 27.6 0.5 3.3e-05 24.3 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|304315201|ref|YP_003850348.1| - 0.00016 22.0 0.1 0.00096 19.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|304315201|ref|YP_003850348.1| - 0.00016 21.8 0.0 0.00034 20.7 0.0 1.5 1 0 0 1 1 1 1 Adenylate kinase AAA_30 PF13604.6 gi|304315201|ref|YP_003850348.1| - 0.00049 19.9 0.1 0.0023 17.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|304315201|ref|YP_003850348.1| - 0.00071 20.0 0.1 0.0011 19.4 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|304315201|ref|YP_003850348.1| - 0.00074 19.2 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|304315201|ref|YP_003850348.1| - 0.00079 20.0 0.0 0.0012 19.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|304315201|ref|YP_003850348.1| - 0.0013 17.8 0.4 0.0033 16.4 0.1 1.8 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Glyco_trans_1_4 PF13692.6 gi|304315201|ref|YP_003850348.1| - 0.0023 18.4 0.0 0.0054 17.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 ATPase PF06745.13 gi|304315201|ref|YP_003850348.1| - 0.003 16.9 0.1 0.04 13.3 0.1 2.4 2 1 0 2 2 2 1 KaiC MMR_HSR1 PF01926.23 gi|304315201|ref|YP_003850348.1| - 0.0034 17.5 0.1 0.0051 16.9 0.1 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase KTI12 PF08433.10 gi|304315201|ref|YP_003850348.1| - 0.0036 16.8 0.0 0.012 15.1 0.0 1.7 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_5 PF07728.14 gi|304315201|ref|YP_003850348.1| - 0.0041 17.1 0.3 0.084 12.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|304315201|ref|YP_003850348.1| - 0.0052 16.5 0.1 0.0054 16.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|304315201|ref|YP_003850348.1| - 0.0062 16.4 0.2 0.023 14.6 0.0 1.9 2 0 0 2 2 2 1 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|304315201|ref|YP_003850348.1| - 0.0074 15.6 0.2 0.015 14.6 0.0 1.5 2 0 0 2 2 2 1 Zeta toxin AAA_23 PF13476.6 gi|304315201|ref|YP_003850348.1| - 0.0095 16.5 0.0 0.0097 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain MCM PF00493.23 gi|304315201|ref|YP_003850348.1| - 0.0098 15.0 0.1 0.78 8.8 0.0 2.7 1 1 1 3 3 3 1 MCM P-loop domain AAA_28 PF13521.6 gi|304315201|ref|YP_003850348.1| - 0.01 16.1 0.5 0.038 14.2 0.1 2.1 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|304315201|ref|YP_003850348.1| - 0.011 15.7 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATP_bind_1 PF03029.17 gi|304315201|ref|YP_003850348.1| - 0.012 15.4 0.1 0.043 13.6 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Glycos_transf_1 PF00534.20 gi|304315201|ref|YP_003850348.1| - 0.013 15.0 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 AAA PF00004.29 gi|304315201|ref|YP_003850348.1| - 0.015 15.7 0.1 0.059 13.8 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|304315201|ref|YP_003850348.1| - 0.016 15.0 0.5 4.7 6.9 0.1 2.3 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Ploopntkinase3 PF18751.1 gi|304315201|ref|YP_003850348.1| - 0.03 14.2 0.1 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 ABC_tran PF00005.27 gi|304315201|ref|YP_003850348.1| - 0.034 14.7 0.2 0.059 13.9 0.2 1.4 1 0 0 1 1 1 0 ABC transporter Viral_helicase1 PF01443.18 gi|304315201|ref|YP_003850348.1| - 0.037 13.8 0.1 0.072 12.8 0.0 1.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|304315201|ref|YP_003850348.1| - 0.039 14.0 0.2 10 6.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|304315201|ref|YP_003850348.1| - 0.04 13.3 0.0 0.092 12.1 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI cobW PF02492.19 gi|304315201|ref|YP_003850348.1| - 0.052 13.1 0.1 0.09 12.4 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.20 gi|304315201|ref|YP_003850348.1| - 0.058 12.5 0.0 0.072 12.2 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_19 PF13245.6 gi|304315201|ref|YP_003850348.1| - 0.059 13.7 0.7 0.37 11.1 0.1 2.1 2 1 0 2 2 2 0 AAA domain KAP_NTPase PF07693.14 gi|304315201|ref|YP_003850348.1| - 0.059 12.6 0.0 0.059 12.6 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain PRK PF00485.18 gi|304315201|ref|YP_003850348.1| - 0.091 12.5 0.1 1 9.1 0.0 2.0 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|304315201|ref|YP_003850348.1| - 0.094 12.9 0.2 0.24 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain IlvN PF07991.12 gi|304315201|ref|YP_003850348.1| - 0.11 12.0 0.1 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain RNA_helicase PF00910.22 gi|304315201|ref|YP_003850348.1| - 0.13 12.6 0.0 0.28 11.6 0.0 1.5 2 0 0 2 2 1 0 RNA helicase Sigma54_activat PF00158.26 gi|304315201|ref|YP_003850348.1| - 0.14 11.8 0.3 1.6 8.4 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain DAP3 PF10236.9 gi|304315201|ref|YP_003850348.1| - 0.15 11.2 0.0 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Thymidylate_kin PF02223.17 gi|304315201|ref|YP_003850348.1| - 0.15 11.7 0.2 0.39 10.4 0.0 1.7 2 0 0 2 2 2 0 Thymidylate kinase NB-ARC PF00931.22 gi|304315201|ref|YP_003850348.1| - 0.17 11.0 0.0 0.28 10.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|304315201|ref|YP_003850348.1| - 0.17 11.7 0.0 0.23 11.3 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea MobB PF03205.14 gi|304315201|ref|YP_003850348.1| - 0.29 11.0 0.9 0.54 10.2 0.1 1.8 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Radical_SAM PF04055.21 gi|304315202|ref|YP_003850349.1| - 3.9e-13 50.1 0.1 9.4e-13 48.9 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|304315202|ref|YP_003850349.1| - 1.2e-07 32.1 0.0 1.9e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|304315202|ref|YP_003850349.1| - 0.00022 21.3 0.0 0.00041 20.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PmbA_TldD PF01523.16 gi|304315203|ref|YP_003850350.1| - 2.6e-57 194.8 0.6 3.2e-57 194.5 0.6 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Hydrolase_3 PF08282.12 gi|304315204|ref|YP_003850351.1| - 6.1e-35 121.2 0.2 2.2e-24 86.6 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|304315204|ref|YP_003850351.1| - 2.5e-10 40.3 0.0 1.3e-07 31.4 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|304315204|ref|YP_003850351.1| - 3.9e-09 37.1 1.1 0.00025 21.4 0.0 3.2 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|304315204|ref|YP_003850351.1| - 2e-08 34.8 2.5 0.006 17.0 0.0 3.2 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|304315204|ref|YP_003850351.1| - 0.00017 21.7 0.0 0.0054 16.8 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|304315204|ref|YP_003850351.1| - 0.0091 16.1 0.0 0.046 13.8 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|304315204|ref|YP_003850351.1| - 0.025 14.6 0.5 0.06 13.4 0.1 1.8 2 0 0 2 2 2 0 HAD-hyrolase-like HypD PF01924.16 gi|304315205|ref|YP_003850352.1| - 8.1e-146 485.6 0.1 9.8e-146 485.3 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Na_Ca_ex PF01699.24 gi|304315207|ref|YP_003850354.1| - 2e-31 109.0 25.7 2.8e-28 98.8 18.2 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Cytochrom_C_asm PF01578.20 gi|304315207|ref|YP_003850354.1| - 1.9 8.2 12.5 0.13 12.0 5.7 2.5 2 1 0 2 2 2 0 Cytochrome C assembly protein DUF11 PF01345.18 gi|304315208|ref|YP_003850355.1| - 5.4e-181 587.5 122.6 2e-22 79.3 0.6 11.7 10 2 0 11 11 11 9 Domain of unknown function DUF11 bMG10 PF17973.1 gi|304315208|ref|YP_003850355.1| - 2.5e-19 69.7 16.1 0.052 13.7 0.0 9.6 9 1 0 10 10 10 6 Bacterial Alpha-2-macroglobulin MG10 domain CARDB PF07705.11 gi|304315208|ref|YP_003850355.1| - 1e-16 61.0 80.6 0.0013 19.0 0.3 12.4 10 6 1 11 11 11 7 CARDB TRAP_beta PF05753.14 gi|304315208|ref|YP_003850355.1| - 2.9e-15 56.1 27.0 0.055 12.9 0.0 9.2 9 0 0 9 9 9 5 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.9 gi|304315208|ref|YP_003850355.1| - 1.3e-09 38.2 43.6 0.23 11.7 0.4 12.7 14 0 0 14 14 14 5 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.6 gi|304315208|ref|YP_003850355.1| - 1.2e-06 28.6 1.0 1.2e-06 28.6 1.0 8.8 9 4 0 9 9 9 1 Carboxypeptidase regulatory-like domain Integrin_alpha2 PF08441.12 gi|304315208|ref|YP_003850355.1| - 1.5e-06 27.4 5.7 1.9 7.3 0.0 7.0 9 0 0 9 9 9 2 Integrin alpha Chlam_OMP6 PF03504.13 gi|304315208|ref|YP_003850355.1| - 0.00075 19.7 18.2 0.77 10.1 0.1 7.0 8 0 0 8 8 8 2 Chlamydia cysteine-rich outer membrane protein 6 bMG3 PF11974.8 gi|304315208|ref|YP_003850355.1| - 0.0035 17.3 0.5 0.019 15.0 0.1 2.6 2 0 0 2 2 2 1 Bacterial alpha-2-macroglobulin MG3 domain CusF_Ec PF11604.8 gi|304315208|ref|YP_003850355.1| - 0.037 14.0 0.5 12 5.9 0.0 4.0 4 0 0 4 4 4 0 Copper binding periplasmic protein CusF Big_6 PF17936.1 gi|304315208|ref|YP_003850355.1| - 0.064 13.5 0.2 0.064 13.5 0.2 5.1 5 0 0 5 5 5 0 Bacterial Ig domain Rpp20 PF12328.8 gi|304315208|ref|YP_003850355.1| - 0.065 13.2 0.4 0.16 11.9 0.4 1.6 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Methyltransf_11 PF08241.12 gi|304315209|ref|YP_003850356.1| - 0.0033 18.1 0.0 0.068 13.8 0.0 2.2 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|304315209|ref|YP_003850356.1| - 0.017 15.8 0.0 0.27 12.0 0.0 2.2 1 1 1 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|304315209|ref|YP_003850356.1| - 0.11 12.4 0.0 0.15 11.9 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain PepSY PF03413.19 gi|304315210|ref|YP_003850357.1| - 0.0035 17.9 0.0 0.011 16.3 0.0 1.8 1 1 0 1 1 1 1 Peptidase propeptide and YPEB domain PIN PF01850.21 gi|304315213|ref|YP_003850360.1| - 0.13 12.8 0.0 0.25 11.9 0.0 1.5 1 1 1 2 2 2 0 PIN domain SWI2_SNF2 PF18766.1 gi|304315214|ref|YP_003850361.1| - 8.7e-25 87.7 7.7 3.7e-23 82.4 3.4 3.5 1 1 1 2 2 2 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|304315214|ref|YP_003850361.1| - 1.2e-17 64.5 1.5 1.2e-17 64.5 1.5 2.1 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|304315214|ref|YP_003850361.1| - 2.1e-13 50.6 3.6 2.4e-13 50.5 0.1 2.8 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|304315214|ref|YP_003850361.1| - 2.7e-09 37.0 0.9 1.7e-08 34.4 0.2 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_11 PF13086.6 gi|304315214|ref|YP_003850361.1| - 0.0049 16.7 2.5 1.9 8.2 0.0 3.0 2 1 1 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|304315214|ref|YP_003850361.1| - 0.015 15.6 0.0 0.058 13.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain PRD PF00874.20 gi|304315214|ref|YP_003850361.1| - 0.036 14.4 0.5 0.24 11.7 0.2 2.7 1 1 0 1 1 1 0 PRD domain KASH_CCD PF14662.6 gi|304315214|ref|YP_003850361.1| - 0.05 13.4 9.6 0.056 13.3 0.8 2.4 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH Enkurin PF13864.6 gi|304315214|ref|YP_003850361.1| - 0.06 13.8 1.1 29 5.2 0.1 4.0 3 1 0 3 3 3 0 Calmodulin-binding DUF2884 PF11101.8 gi|304315214|ref|YP_003850361.1| - 0.11 12.0 1.7 0.42 10.1 1.7 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) USP8_dimer PF08969.11 gi|304315214|ref|YP_003850361.1| - 0.17 12.1 2.9 0.48 10.6 0.2 3.1 2 0 0 2 2 2 0 USP8 dimerisation domain Bac_DNA_binding PF00216.21 gi|304315214|ref|YP_003850361.1| - 0.2 11.9 2.6 0.66 10.2 0.1 3.2 4 1 0 4 4 4 0 Bacterial DNA-binding protein AAA_22 PF13401.6 gi|304315214|ref|YP_003850361.1| - 0.26 11.5 2.2 6 7.1 2.2 3.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|304315214|ref|YP_003850361.1| - 0.43 11.0 3.6 1.5 9.3 0.4 3.5 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) UvrD-helicase PF00580.21 gi|304315214|ref|YP_003850361.1| - 4 6.9 11.4 8.1 5.9 5.5 3.6 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain DUF4145 PF13643.6 gi|304315215|ref|YP_003850362.1| - 0.048 13.8 0.0 0.13 12.4 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) Methylase_S PF01420.19 gi|304315216|ref|YP_003850363.1| - 1.2e-46 159.0 1.9 3.5e-29 102.2 4.1 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.16 gi|304315217|ref|YP_003850364.1| - 1.2e-66 225.1 0.1 2.5e-66 224.1 0.0 1.6 1 1 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|304315217|ref|YP_003850364.1| - 1.6e-21 77.3 2.5 1.6e-21 77.3 2.5 3.2 3 1 0 3 3 3 1 HsdM N-terminal domain Eco57I PF07669.11 gi|304315217|ref|YP_003850364.1| - 5.7e-05 23.6 0.0 0.0006 20.3 0.0 2.7 2 0 0 2 2 2 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|304315217|ref|YP_003850364.1| - 0.00014 21.6 2.0 0.0011 18.7 0.6 2.6 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|304315217|ref|YP_003850364.1| - 0.00068 19.2 0.0 0.0015 18.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|304315217|ref|YP_003850364.1| - 0.071 13.8 0.1 1.1 10.0 0.0 2.9 3 1 1 4 4 4 0 Methyltransferase domain Bromodomain PF00439.25 gi|304315217|ref|YP_003850364.1| - 0.66 10.1 4.8 0.44 10.7 0.3 3.2 3 0 0 3 3 3 0 Bromodomain zinc_ribbon_2 PF13240.6 gi|304315218|ref|YP_003850365.1| - 0.0098 15.6 1.6 0.021 14.6 1.6 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|304315218|ref|YP_003850365.1| - 0.033 14.2 0.3 0.058 13.4 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.6 gi|304315218|ref|YP_003850365.1| - 0.052 12.9 0.3 0.12 11.7 0.3 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger DUF5590 PF17881.1 gi|304315218|ref|YP_003850365.1| - 0.063 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5590) PHO4 PF01384.20 gi|304315218|ref|YP_003850365.1| - 0.12 11.4 0.1 0.1 11.7 0.1 1.1 1 0 0 1 1 1 0 Phosphate transporter family zf-C2H2_4 PF13894.6 gi|304315218|ref|YP_003850365.1| - 0.9 10.6 4.4 2.2 9.3 0.3 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger Zn_Tnp_IS1595 PF12760.7 gi|304315218|ref|YP_003850365.1| - 7 6.7 7.1 13 5.9 1.1 2.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain ABC2_membrane PF01061.24 gi|304315220|ref|YP_003850367.1| - 3.5e-40 137.7 25.6 3.5e-40 137.7 25.6 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|304315220|ref|YP_003850367.1| - 4.4e-13 49.1 33.2 4.4e-13 49.1 33.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|304315220|ref|YP_003850367.1| - 2.5e-05 23.7 24.2 2.5e-05 23.7 24.2 2.2 1 1 2 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|304315220|ref|YP_003850367.1| - 0.014 15.3 25.0 0.012 15.5 18.9 2.9 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|304315221|ref|YP_003850368.1| - 3.7e-28 98.7 0.0 6.1e-28 98.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|304315221|ref|YP_003850368.1| - 1.6e-11 44.6 0.1 4.5e-07 30.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|304315221|ref|YP_003850368.1| - 1.2e-10 42.0 0.1 2.6e-10 40.9 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|304315221|ref|YP_003850368.1| - 5.3e-05 23.8 0.0 0.00011 22.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|304315221|ref|YP_003850368.1| - 0.0027 18.1 0.0 0.036 14.5 0.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|304315221|ref|YP_003850368.1| - 0.0029 17.3 0.1 0.0051 16.5 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|304315221|ref|YP_003850368.1| - 0.0042 16.5 0.0 0.65 9.4 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DLIC PF05783.11 gi|304315221|ref|YP_003850368.1| - 0.0051 15.7 0.0 0.0074 15.2 0.0 1.2 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) AAA_16 PF13191.6 gi|304315221|ref|YP_003850368.1| - 0.0078 16.6 0.0 0.014 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|304315221|ref|YP_003850368.1| - 0.016 15.0 0.0 4.4 6.9 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain ATPase_2 PF01637.18 gi|304315221|ref|YP_003850368.1| - 0.017 15.1 1.1 0.17 11.8 0.1 2.5 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|304315221|ref|YP_003850368.1| - 0.027 14.2 0.0 0.078 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|304315221|ref|YP_003850368.1| - 0.042 13.5 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.21 gi|304315221|ref|YP_003850368.1| - 0.097 12.0 0.0 0.31 10.4 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI cobW PF02492.19 gi|304315221|ref|YP_003850368.1| - 0.12 11.9 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_27 PF13514.6 gi|304315221|ref|YP_003850368.1| - 0.16 11.6 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|304315221|ref|YP_003850368.1| - 0.19 11.6 0.0 0.39 10.6 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|304315221|ref|YP_003850368.1| - 0.23 11.1 0.4 1.8 8.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|304315222|ref|YP_003850369.1| - 1.6e-100 335.2 0.0 5.4e-60 202.6 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|304315222|ref|YP_003850369.1| - 9.2e-17 61.3 0.0 1.1e-09 38.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain RecA PF00154.21 gi|304315222|ref|YP_003850369.1| - 4.3e-10 39.5 0.3 0.00058 19.4 0.1 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein DnaB_C PF03796.15 gi|304315222|ref|YP_003850369.1| - 8.9e-10 38.3 0.0 0.00028 20.3 0.0 2.1 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|304315222|ref|YP_003850369.1| - 4.2e-09 37.0 0.0 0.00038 20.9 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|304315222|ref|YP_003850369.1| - 6.9e-09 36.1 0.0 0.0031 17.8 0.0 2.6 2 1 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|304315222|ref|YP_003850369.1| - 2e-07 30.9 0.0 0.0029 17.4 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein DUF2075 PF09848.9 gi|304315222|ref|YP_003850369.1| - 2.4e-07 30.4 0.0 0.0071 15.6 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|304315222|ref|YP_003850369.1| - 8.6e-07 29.0 0.0 0.0099 15.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain PAXNEB PF05625.11 gi|304315222|ref|YP_003850369.1| - 1.7e-06 27.5 1.1 4.6e-05 22.7 0.0 2.3 2 0 0 2 2 2 1 PAXNEB protein AAA_28 PF13521.6 gi|304315222|ref|YP_003850369.1| - 2.2e-06 28.0 0.0 0.023 14.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain Rad51 PF08423.11 gi|304315222|ref|YP_003850369.1| - 2.3e-06 27.1 0.3 0.06 12.6 0.0 2.3 2 0 0 2 2 2 2 Rad51 AAA_24 PF13479.6 gi|304315222|ref|YP_003850369.1| - 2.7e-06 27.2 0.0 0.014 15.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|304315222|ref|YP_003850369.1| - 3.8e-05 24.0 0.0 0.17 12.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|304315222|ref|YP_003850369.1| - 5.9e-05 22.9 0.0 0.028 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.9 gi|304315222|ref|YP_003850369.1| - 7e-05 21.9 0.0 0.0079 15.1 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|304315222|ref|YP_003850369.1| - 0.00013 22.0 0.0 0.055 13.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|304315222|ref|YP_003850369.1| - 0.00015 20.9 0.1 0.001 18.2 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein GvpD PF07088.11 gi|304315222|ref|YP_003850369.1| - 0.00018 20.3 1.3 0.0025 16.5 0.6 3.0 2 1 1 3 3 3 1 GvpD gas vesicle protein AAA_7 PF12775.7 gi|304315222|ref|YP_003850369.1| - 0.00019 21.0 0.0 0.57 9.7 0.0 2.2 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA PF00004.29 gi|304315222|ref|YP_003850369.1| - 0.00032 21.1 0.0 0.34 11.3 0.0 2.7 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) DEAD PF00270.29 gi|304315222|ref|YP_003850369.1| - 0.0007 19.4 0.0 0.031 14.0 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|304315222|ref|YP_003850369.1| - 0.0008 19.9 0.0 0.05 14.1 0.0 2.4 2 0 0 2 2 2 1 ABC transporter NACHT PF05729.12 gi|304315222|ref|YP_003850369.1| - 0.0009 19.2 0.1 0.27 11.2 0.0 2.8 2 1 0 2 2 2 1 NACHT domain AAA_29 PF13555.6 gi|304315222|ref|YP_003850369.1| - 0.00097 18.8 2.4 0.39 10.5 0.5 2.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|304315222|ref|YP_003850369.1| - 0.0012 19.4 0.0 0.3 11.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|304315222|ref|YP_003850369.1| - 0.0012 18.7 0.0 0.11 12.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|304315222|ref|YP_003850369.1| - 0.0028 16.9 0.0 0.056 12.7 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin TniB PF05621.11 gi|304315222|ref|YP_003850369.1| - 0.0029 17.0 0.0 0.52 9.7 0.0 2.4 2 0 0 2 2 2 1 Bacterial TniB protein ATP-synt_ab PF00006.25 gi|304315222|ref|YP_003850369.1| - 0.0042 16.8 0.0 1.7 8.3 0.0 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain UvrD-helicase PF00580.21 gi|304315222|ref|YP_003850369.1| - 0.0044 16.6 0.3 0.49 9.9 0.0 2.2 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain Sigma54_activat PF00158.26 gi|304315222|ref|YP_003850369.1| - 0.0049 16.6 0.2 1.1 8.9 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain SRP54 PF00448.22 gi|304315222|ref|YP_003850369.1| - 0.0087 15.7 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain cobW PF02492.19 gi|304315222|ref|YP_003850369.1| - 0.0092 15.6 0.2 0.15 11.6 0.0 2.6 3 0 0 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|304315222|ref|YP_003850369.1| - 0.011 15.8 0.0 0.17 12.0 0.0 2.4 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|304315222|ref|YP_003850369.1| - 0.011 14.7 0.0 0.16 10.9 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB FtsK_SpoIIIE PF01580.18 gi|304315222|ref|YP_003850369.1| - 0.015 14.7 0.8 2 7.7 0.1 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_23 PF13476.6 gi|304315222|ref|YP_003850369.1| - 0.018 15.6 0.7 0.5 10.8 0.2 2.3 2 0 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.15 gi|304315222|ref|YP_003850369.1| - 0.021 14.0 0.0 2.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Anion-transporting ATPase RNA_helicase PF00910.22 gi|304315222|ref|YP_003850369.1| - 0.028 14.8 0.0 7.8 6.9 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Viral_helicase1 PF01443.18 gi|304315222|ref|YP_003850369.1| - 0.065 13.0 0.0 2.4 7.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_5 PF07728.14 gi|304315222|ref|YP_003850369.1| - 0.074 13.0 0.1 13 5.8 0.1 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|304315222|ref|YP_003850369.1| - 0.13 11.7 0.4 4.5 6.7 0.1 2.2 2 0 0 2 2 2 0 PhoH-like protein Thymidylate_kin PF02223.17 gi|304315222|ref|YP_003850369.1| - 0.13 11.9 0.0 0.28 10.8 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase TIP49 PF06068.13 gi|304315222|ref|YP_003850369.1| - 0.22 10.7 0.3 6.4 5.9 0.0 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain KaiB PF07689.12 gi|304315223|ref|YP_003850370.1| - 9e-16 57.4 0.0 1.1e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 KaiB domain Thioredoxin PF00085.20 gi|304315223|ref|YP_003850370.1| - 0.04 13.9 0.0 0.047 13.7 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin MEDS PF14417.6 gi|304315224|ref|YP_003850371.1| - 6.9e-50 169.0 0.0 1.7e-49 167.8 0.0 1.7 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HisKA_2 PF07568.12 gi|304315224|ref|YP_003850371.1| - 2.9e-28 97.8 2.3 5.6e-28 96.9 2.3 1.5 1 0 0 1 1 1 1 Histidine kinase PAS_4 PF08448.10 gi|304315224|ref|YP_003850371.1| - 2.7e-15 56.5 0.0 1.5e-08 34.8 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|304315224|ref|YP_003850371.1| - 9e-09 35.3 0.0 2.4e-06 27.5 0.0 3.4 2 1 1 3 3 3 1 PAS fold HATPase_c PF02518.26 gi|304315224|ref|YP_003850371.1| - 2.2e-08 34.6 0.0 5.6e-08 33.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|304315224|ref|YP_003850371.1| - 2.7e-07 30.6 0.1 5.6e-07 29.6 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|304315224|ref|YP_003850371.1| - 2.8e-07 30.4 0.0 4e-06 26.7 0.0 2.7 2 0 0 2 2 2 1 PAS domain HWE_HK PF07536.14 gi|304315224|ref|YP_003850371.1| - 9.9e-05 23.0 0.1 0.00019 22.0 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase PAS_9 PF13426.7 gi|304315224|ref|YP_003850371.1| - 0.00048 20.4 0.0 1 9.6 0.0 3.2 3 0 0 3 3 3 2 PAS domain SPOB_a PF14689.6 gi|304315224|ref|YP_003850371.1| - 0.038 13.7 0.3 0.11 12.3 0.3 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Tgi2PP PF18250.1 gi|304315225|ref|YP_003850372.1| - 0.065 13.5 0.6 0.11 12.7 0.2 1.7 2 0 0 2 2 2 0 Effector immunity protein Tgi2PP Rhodanese PF00581.20 gi|304315226|ref|YP_003850373.1| - 4.4e-21 75.4 0.0 5.6e-11 42.9 0.0 3.1 4 0 0 4 4 4 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|304315226|ref|YP_003850373.1| - 8.2e-09 35.7 3.3 2.7e-08 34.1 2.4 2.3 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Pyridox_ox_2 PF12900.7 gi|304315227|ref|YP_003850374.1| - 4.2e-21 75.4 0.0 5e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|304315227|ref|YP_003850374.1| - 1.9e-05 24.7 0.0 2.6e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase UbiA PF01040.18 gi|304315228|ref|YP_003850375.1| - 1.4e-41 142.5 13.8 1.4e-41 142.5 13.8 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Thymidylate_kin PF02223.17 gi|304315230|ref|YP_003850377.1| - 1.9e-39 135.2 0.0 2.2e-39 135.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.6 gi|304315230|ref|YP_003850377.1| - 2.1e-05 25.1 0.0 0.00039 21.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|304315230|ref|YP_003850377.1| - 0.042 13.7 0.0 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase PPK2 PF03976.14 gi|304315230|ref|YP_003850377.1| - 0.068 12.7 0.2 5 6.5 0.1 2.4 2 1 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) SKI PF01202.22 gi|304315230|ref|YP_003850377.1| - 0.079 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Shikimate kinase Lactamase_B PF00753.27 gi|304315231|ref|YP_003850378.1| - 1.8e-09 37.9 0.0 2.5e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|304315231|ref|YP_003850378.1| - 1.6e-05 24.5 0.0 2.5e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AGT PF11440.8 gi|304315231|ref|YP_003850378.1| - 0.047 12.7 0.0 0.065 12.3 0.0 1.1 1 0 0 1 1 1 0 DNA alpha-glucosyltransferase Lactamase_B_6 PF16661.5 gi|304315231|ref|YP_003850378.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Inos-1-P_synth PF01658.17 gi|304315233|ref|YP_003850380.1| - 8.9e-33 112.8 0.0 1.3e-32 112.2 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|304315233|ref|YP_003850380.1| - 0.096 12.0 0.0 0.43 9.9 0.0 2.0 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase Fer4 PF00037.27 gi|304315234|ref|YP_003850381.1| - 1.4e-12 46.9 22.3 2.6e-07 30.2 6.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304315234|ref|YP_003850381.1| - 3.4e-10 39.9 28.8 6.3e-09 35.8 14.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304315234|ref|YP_003850381.1| - 1.5e-09 37.3 13.5 2.8e-05 23.9 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304315234|ref|YP_003850381.1| - 4.1e-08 33.7 46.6 7.5e-05 23.2 19.8 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304315234|ref|YP_003850381.1| - 1.1e-07 31.9 15.2 1.5e-07 31.4 15.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304315234|ref|YP_003850381.1| - 6.1e-07 29.2 20.2 1e-05 25.4 5.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304315234|ref|YP_003850381.1| - 1e-06 29.5 12.5 0.0028 18.6 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|304315234|ref|YP_003850381.1| - 2.8e-06 27.3 19.9 1.2e-05 25.4 19.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304315234|ref|YP_003850381.1| - 3.1e-06 27.3 18.8 0.0026 18.1 3.5 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|304315234|ref|YP_003850381.1| - 1.6e-05 25.4 11.4 0.007 16.9 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304315234|ref|YP_003850381.1| - 4.6e-05 23.8 13.0 0.01 16.2 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304315234|ref|YP_003850381.1| - 0.00025 21.7 18.3 0.087 13.8 5.7 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|304315234|ref|YP_003850381.1| - 0.0068 16.6 18.0 0.064 13.5 4.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304315234|ref|YP_003850381.1| - 0.13 12.8 20.0 5.3 7.7 20.0 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|304315234|ref|YP_003850381.1| - 0.26 12.1 19.2 16 6.3 19.2 2.5 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|304315234|ref|YP_003850381.1| - 0.98 10.3 11.9 1.1 10.2 0.8 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain PYC_OADA PF02436.18 gi|304315235|ref|YP_003850382.1| - 9.5e-54 182.2 0.0 1.9e-53 181.1 0.0 1.5 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|304315235|ref|YP_003850382.1| - 3.1e-42 144.9 0.0 4.4e-42 144.5 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|304315235|ref|YP_003850382.1| - 9.2e-18 63.8 4.7 1.7e-17 63.0 4.7 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|304315235|ref|YP_003850382.1| - 3e-09 36.5 1.0 0.0014 18.4 0.7 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|304315235|ref|YP_003850382.1| - 0.00011 22.8 0.7 0.12 13.1 0.1 2.5 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|304315235|ref|YP_003850382.1| - 0.002 17.4 1.6 0.21 10.8 0.3 2.2 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion NQRA PF05896.11 gi|304315235|ref|YP_003850382.1| - 0.011 15.2 0.6 0.02 14.3 0.6 1.3 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DUF2118 PF09891.9 gi|304315235|ref|YP_003850382.1| - 0.036 14.0 1.2 0.28 11.1 1.0 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) QRPTase_N PF02749.16 gi|304315235|ref|YP_003850382.1| - 0.041 13.9 0.5 1.3 9.2 0.1 2.6 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain GCV_H PF01597.19 gi|304315235|ref|YP_003850382.1| - 0.042 13.7 0.4 0.1 12.5 0.4 1.6 1 0 0 1 1 1 0 Glycine cleavage H-protein Peptidase_M3_N PF08439.10 gi|304315235|ref|YP_003850382.1| - 0.37 11.1 1.4 6.9 7.0 0.0 3.4 3 1 1 4 4 4 0 Oligopeptidase F CbiM PF01891.16 gi|304315236|ref|YP_003850383.1| - 4.2e-29 101.9 20.6 5.4e-29 101.5 20.6 1.1 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region QueC PF06508.13 gi|304315237|ref|YP_003850384.1| - 9.2e-65 218.1 0.0 1e-64 217.9 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|304315237|ref|YP_003850384.1| - 2e-07 31.0 0.3 3.6e-07 30.2 0.3 1.3 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.14 gi|304315237|ref|YP_003850384.1| - 3.2e-06 26.9 0.1 0.0061 16.2 0.0 2.4 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.17 gi|304315237|ref|YP_003850384.1| - 0.0011 18.1 0.0 0.0021 17.2 0.0 1.4 2 0 0 2 2 2 1 NAD synthase HTH_50 PF18024.1 gi|304315237|ref|YP_003850384.1| - 0.0034 17.0 0.0 0.0074 15.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Arginosuc_synth PF00764.19 gi|304315237|ref|YP_003850384.1| - 0.027 13.8 0.0 0.27 10.5 0.0 1.9 2 0 0 2 2 2 0 Arginosuccinate synthase tRNA_Me_trans PF03054.16 gi|304315237|ref|YP_003850384.1| - 0.027 13.3 0.0 0.046 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase IU_nuc_hydro PF01156.19 gi|304315237|ref|YP_003850384.1| - 0.18 11.3 0.0 0.4 10.2 0.0 1.4 2 0 0 2 2 2 0 Inosine-uridine preferring nucleoside hydrolase DUF111 PF01969.17 gi|304315238|ref|YP_003850385.1| - 1.1e-119 399.9 0.2 1.2e-119 399.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Nit_Regul_Hom PF10126.9 gi|304315239|ref|YP_003850386.1| - 2.7e-46 156.0 0.1 2.9e-46 155.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII PgpA PF04608.13 gi|304315240|ref|YP_003850387.1| - 1.2e-11 44.8 0.1 1.7e-11 44.3 0.1 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.15 gi|304315241|ref|YP_003850388.1| - 4.7e-38 131.4 14.5 5.4e-38 131.3 14.5 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Trm56 PF01994.16 gi|304315242|ref|YP_003850389.1| - 1.6e-44 150.6 0.0 2e-44 150.3 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 NIR_SIR_ferr PF03460.17 gi|304315242|ref|YP_003850389.1| - 0.12 12.2 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain UPRTase PF14681.6 gi|304315243|ref|YP_003850390.1| - 2e-39 135.2 0.0 2.2e-39 135.0 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|304315243|ref|YP_003850390.1| - 1.6e-08 34.2 0.0 2.3e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Fumerase_C PF05683.12 gi|304315244|ref|YP_003850391.1| - 7e-20 71.2 0.0 1.2e-19 70.4 0.0 1.4 1 1 0 1 1 1 1 Fumarase C-terminus Pyridoxal_deC PF00282.19 gi|304315245|ref|YP_003850392.1| - 2.6e-36 125.1 0.0 7.8e-36 123.6 0.0 1.6 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|304315245|ref|YP_003850392.1| - 1.9e-14 53.4 0.0 8.1e-10 38.2 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|304315245|ref|YP_003850392.1| - 1.6e-06 27.5 0.0 0.00048 19.4 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|304315245|ref|YP_003850392.1| - 3.9e-06 26.4 0.2 6.5e-06 25.7 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|304315245|ref|YP_003850392.1| - 0.00018 20.9 0.0 0.00054 19.3 0.1 1.6 2 0 0 2 2 2 1 Beta-eliminating lyase SepSecS PF05889.13 gi|304315245|ref|YP_003850392.1| - 0.00047 19.0 0.0 0.01 14.6 0.0 2.0 2 0 0 2 2 2 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS PPDK_N PF01326.19 gi|304315246|ref|YP_003850393.1| - 1.4e-117 392.6 0.1 2.3e-117 391.9 0.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|304315246|ref|YP_003850393.1| - 5.9e-92 307.9 0.1 1.2e-91 306.9 0.0 1.5 2 0 0 2 2 2 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|304315246|ref|YP_003850393.1| - 4.5e-27 93.6 2.6 1.1e-26 92.3 2.6 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|304315246|ref|YP_003850393.1| - 0.00019 20.7 0.1 0.00049 19.3 0.1 1.7 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Epimerase_2 PF02350.19 gi|304315246|ref|YP_003850393.1| - 0.012 14.5 0.8 0.12 11.2 0.1 2.7 4 0 0 4 4 4 0 UDP-N-acetylglucosamine 2-epimerase Peptidase_M17_N PF02789.17 gi|304315246|ref|YP_003850393.1| - 0.055 13.3 0.1 0.62 9.9 0.0 2.8 4 0 0 4 4 4 0 Cytosol aminopeptidase family, N-terminal domain COG4 PF08318.12 gi|304315246|ref|YP_003850393.1| - 0.15 11.1 0.1 2.2 7.3 0.0 2.1 2 0 0 2 2 2 0 COG4 transport protein Ribosomal_L16 PF00252.18 gi|304315247|ref|YP_003850394.1| - 1.4e-35 122.2 2.0 1.7e-35 121.9 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e CbiA PF01656.23 gi|304315248|ref|YP_003850395.1| - 5.2e-24 84.7 0.0 6.5e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|304315248|ref|YP_003850395.1| - 1.8e-09 37.7 0.0 1.6e-08 34.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|304315248|ref|YP_003850395.1| - 6.3e-08 32.4 0.3 0.00082 18.9 0.0 2.5 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|304315248|ref|YP_003850395.1| - 9.2e-08 31.6 0.5 5.1e-06 25.9 0.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|304315248|ref|YP_003850395.1| - 1.6e-07 31.1 0.3 0.0099 15.3 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|304315248|ref|YP_003850395.1| - 3.9e-05 23.6 0.9 0.0002 21.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 gi|304315248|ref|YP_003850395.1| - 7.5e-05 22.3 0.0 0.058 12.9 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 gi|304315248|ref|YP_003850395.1| - 0.0021 17.8 0.0 0.015 15.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|304315248|ref|YP_003850395.1| - 0.017 15.6 0.0 0.031 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|304315248|ref|YP_003850395.1| - 0.055 13.9 0.0 0.1 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|304315248|ref|YP_003850395.1| - 0.058 13.3 0.4 0.11 12.4 0.4 1.5 1 0 0 1 1 1 0 NTPase ATP_bind_1 PF03029.17 gi|304315248|ref|YP_003850395.1| - 0.086 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein PRK PF00485.18 gi|304315248|ref|YP_003850395.1| - 0.088 12.5 0.1 0.17 11.6 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.20 gi|304315248|ref|YP_003850395.1| - 0.11 12.4 0.4 3.9 7.4 0.1 2.6 2 1 1 3 3 3 0 Adenylylsulphate kinase NB-ARC PF00931.22 gi|304315248|ref|YP_003850395.1| - 0.13 11.5 0.4 0.23 10.6 0.4 1.4 1 0 0 1 1 1 0 NB-ARC domain SRP54 PF00448.22 gi|304315248|ref|YP_003850395.1| - 0.13 11.9 0.1 0.26 10.9 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|304315248|ref|YP_003850395.1| - 0.16 11.8 0.1 14 5.6 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase AAA_25 PF13481.6 gi|304315248|ref|YP_003850395.1| - 0.52 9.9 2.9 1.9 8.0 0.2 2.4 3 0 0 3 3 3 0 AAA domain Pcc1 PF09341.10 gi|304315249|ref|YP_003850396.1| - 0.00092 19.3 0.1 0.0014 18.7 0.1 1.3 1 1 0 1 1 1 1 Transcription factor Pcc1 RlmM_FDX PF18125.1 gi|304315249|ref|YP_003850396.1| - 0.035 14.6 0.0 0.045 14.2 0.0 1.2 1 1 0 1 1 1 0 RlmM ferredoxin-like domain tRNA_bind_4 PF18490.1 gi|304315250|ref|YP_003850397.1| - 2.3e-56 190.0 0.1 3.7e-56 189.4 0.1 1.3 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|304315250|ref|YP_003850397.1| - 1.1e-10 41.8 0.0 2.7e-10 40.5 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-C2HC5 PF06221.13 gi|304315251|ref|YP_003850398.1| - 0.00021 21.2 2.6 0.00029 20.8 2.6 1.2 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type zf-B_box PF00643.24 gi|304315251|ref|YP_003850398.1| - 0.012 15.8 5.8 0.012 15.7 1.6 2.0 2 0 0 2 2 2 0 B-box zinc finger DUF2180 PF09947.9 gi|304315251|ref|YP_003850398.1| - 0.072 13.1 3.2 0.072 13.1 3.2 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) DUF4711 PF15829.5 gi|304315251|ref|YP_003850398.1| - 0.097 12.6 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4711) Laminin_EGF PF00053.24 gi|304315251|ref|YP_003850398.1| - 0.1 12.7 6.3 0.15 12.2 6.3 1.2 1 0 0 1 1 1 0 Laminin EGF domain FYVE PF01363.21 gi|304315251|ref|YP_003850398.1| - 0.27 11.4 7.1 5.7 7.2 7.1 2.1 1 1 0 1 1 1 0 FYVE zinc finger HisKA_2 PF07568.12 gi|304315252|ref|YP_003850399.1| - 1e-22 80.0 1.6 1e-22 80.0 1.6 1.7 2 0 0 2 2 2 1 Histidine kinase HWE_HK PF07536.14 gi|304315252|ref|YP_003850399.1| - 1.5e-10 41.6 0.5 3.9e-10 40.3 0.5 1.7 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c PF02518.26 gi|304315252|ref|YP_003850399.1| - 2.2e-10 41.0 0.1 5.8e-10 39.7 0.1 1.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|304315252|ref|YP_003850399.1| - 2.6e-05 24.1 0.0 7.7e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|304315252|ref|YP_003850399.1| - 0.00015 21.7 0.0 0.00028 20.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|304315252|ref|YP_003850399.1| - 0.0022 18.0 0.0 0.0054 16.7 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_7 PF12860.7 gi|304315252|ref|YP_003850399.1| - 0.0046 17.1 0.0 0.3 11.2 0.0 2.8 1 1 0 1 1 1 1 PAS fold Sec8_exocyst PF04048.14 gi|304315252|ref|YP_003850399.1| - 0.17 11.8 0.3 0.35 10.8 0.3 1.4 1 0 0 1 1 1 0 Sec8 exocyst complex component specific domain FKBP26_C PF18046.1 gi|304315253|ref|YP_003850400.1| - 7.5e-25 86.8 0.6 1.9e-24 85.6 0.6 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|304315253|ref|YP_003850400.1| - 6.8e-16 58.4 0.0 1.6e-15 57.2 0.0 1.7 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase HIGH_NTase1_ass PF16581.5 gi|304315254|ref|YP_003850401.1| - 3.1e-81 272.2 0.0 3.9e-81 271.9 0.0 1.1 1 0 0 1 1 1 1 Cytidyltransferase-related C-terminal region HIGH_NTase1 PF05636.11 gi|304315254|ref|YP_003850401.1| - 1.1e-19 71.0 0.0 4.8e-14 52.4 0.0 2.1 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase CTP_transf_like PF01467.26 gi|304315254|ref|YP_003850401.1| - 0.0054 16.9 0.0 0.016 15.4 0.0 1.8 2 1 0 2 2 2 1 Cytidylyltransferase-like Amidohydro_1 PF01979.20 gi|304315255|ref|YP_003850402.1| - 7.9e-22 78.0 0.0 1.3e-20 74.0 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|304315255|ref|YP_003850402.1| - 9.1e-15 55.1 0.4 1.6e-07 31.2 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family CooT PF10133.9 gi|304315256|ref|YP_003850403.1| - 7.7e-18 64.5 0.4 8.5e-18 64.4 0.4 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT MCR_alpha_N PF02745.15 gi|304315257|ref|YP_003850404.1| - 4e-150 498.6 0.1 5.3e-150 498.2 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|304315257|ref|YP_003850404.1| - 1.2e-71 239.1 3.7 7.1e-71 236.6 3.1 2.3 2 0 0 2 2 2 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_beta_N PF02783.15 gi|304315257|ref|YP_003850404.1| - 0.015 14.9 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_gamma PF02240.16 gi|304315258|ref|YP_003850405.1| - 4.6e-136 451.8 1.6 5.3e-136 451.6 1.6 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_D PF02505.14 gi|304315259|ref|YP_003850406.1| - 1.6e-54 183.6 0.1 1.8e-54 183.4 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.18 gi|304315260|ref|YP_003850407.1| - 4.9e-141 468.6 7.2 6.7e-141 468.1 7.2 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|304315260|ref|YP_003850407.1| - 1.9e-82 275.3 0.9 2.9e-82 274.7 0.9 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain Fer4 PF00037.27 gi|304315261|ref|YP_003850408.1| - 1.3e-65 214.7 132.4 5e-07 29.3 4.6 12.6 13 0 0 13 13 13 12 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304315261|ref|YP_003850408.1| - 3.5e-52 174.8 90.3 1.5e-10 41.5 12.3 8.1 5 2 2 8 8 8 8 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304315261|ref|YP_003850408.1| - 1.1e-40 137.5 101.1 2.5e-09 37.2 9.0 8.3 4 2 6 10 10 10 10 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304315261|ref|YP_003850408.1| - 7.3e-40 133.4 129.5 8.9e-07 28.7 4.3 12.2 12 0 0 12 12 12 12 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304315261|ref|YP_003850408.1| - 2e-39 134.4 93.3 0.00067 20.5 0.5 12.2 9 2 3 12 12 12 12 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|304315261|ref|YP_003850408.1| - 6.1e-39 131.9 102.9 2.6e-09 37.1 13.1 8.4 4 3 5 9 9 9 9 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304315261|ref|YP_003850408.1| - 3e-36 121.3 115.1 1.1e-05 25.3 4.4 12.2 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304315261|ref|YP_003850408.1| - 1.1e-32 111.9 98.4 2.5e-10 40.3 9.6 8.2 6 2 2 8 8 8 7 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304315261|ref|YP_003850408.1| - 2.8e-23 82.1 89.9 1.3e-05 25.5 7.7 9.8 6 2 2 8 8 8 7 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304315261|ref|YP_003850408.1| - 2.3e-20 71.9 144.8 0.02 15.8 4.9 12.2 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_4 PF12800.7 gi|304315261|ref|YP_003850408.1| - 4.4e-20 70.5 119.8 0.0022 18.4 1.1 12.2 10 2 2 12 12 12 11 4Fe-4S binding domain Fer4_17 PF13534.6 gi|304315261|ref|YP_003850408.1| - 7e-17 61.7 102.0 0.00021 21.8 9.4 10.8 5 5 4 9 9 9 8 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|304315261|ref|YP_003850408.1| - 0.00036 20.7 103.7 0.3 11.3 3.3 9.8 2 2 8 10 10 10 5 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304315261|ref|YP_003850408.1| - 0.0011 19.5 13.2 0.0069 16.9 3.5 12.1 11 2 0 11 11 11 4 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|304315261|ref|YP_003850408.1| - 0.0014 19.3 8.7 0.016 15.9 1.1 12.9 11 5 1 12 12 12 3 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|304315261|ref|YP_003850408.1| - 0.69 10.8 96.2 0.37 11.7 1.5 11.3 7 3 6 13 13 13 0 4Fe-4S dicluster domain NiFeSe_Hases PF00374.19 gi|304315262|ref|YP_003850409.1| - 3.1e-37 128.6 0.0 6.8e-18 64.8 0.0 3.1 3 0 0 3 3 3 3 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|304315262|ref|YP_003850409.1| - 0.019 14.1 0.0 0.84 8.7 0.0 2.2 2 0 0 2 2 2 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Peripla_BP_6 PF13458.6 gi|304315262|ref|YP_003850409.1| - 0.16 11.6 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein Oxidored_q6 PF01058.22 gi|304315263|ref|YP_003850410.1| - 1e-30 106.2 0.0 1.8e-30 105.5 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit FlpD PF02662.16 gi|304315264|ref|YP_003850411.1| - 3.7e-54 182.0 0.1 4.1e-54 181.8 0.1 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Ldh_2 PF02615.14 gi|304315264|ref|YP_003850411.1| - 0.1 11.7 0.0 0.43 9.7 0.0 1.8 1 1 1 2 2 2 0 Malate/L-lactate dehydrogenase Fibrillarin_2 PF10113.9 gi|304315265|ref|YP_003850412.1| - 5.8e-258 856.5 0.0 6.6e-258 856.3 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin-like archaeal protein FlpD PF02662.16 gi|304315266|ref|YP_003850413.1| - 1.4e-55 186.5 0.0 1.6e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit APOC4 PF15119.6 gi|304315266|ref|YP_003850413.1| - 0.15 12.3 0.2 0.21 11.9 0.2 1.2 1 0 0 1 1 1 0 Apolipoprotein C4 FrhB_FdhB_C PF04432.13 gi|304315267|ref|YP_003850414.1| - 3.7e-38 130.8 0.0 3.7e-38 130.8 0.0 2.2 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|304315267|ref|YP_003850414.1| - 6.3e-18 64.7 0.0 3.5e-17 62.3 0.0 2.0 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.6 gi|304315267|ref|YP_003850414.1| - 3.8e-07 30.4 13.3 9.9e-07 29.1 12.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304315267|ref|YP_003850414.1| - 2.2e-06 28.1 23.7 1.6e-05 25.3 13.9 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304315267|ref|YP_003850414.1| - 4.1e-05 23.7 18.1 0.0002 21.5 16.3 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304315267|ref|YP_003850414.1| - 0.00021 21.3 28.8 0.00079 19.5 1.5 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|304315267|ref|YP_003850414.1| - 0.00034 20.3 4.6 0.00034 20.3 4.6 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|304315267|ref|YP_003850414.1| - 0.00066 20.0 2.5 0.00066 20.0 2.5 3.9 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304315267|ref|YP_003850414.1| - 0.00075 19.4 10.4 0.0035 17.4 0.8 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304315267|ref|YP_003850414.1| - 0.0014 19.2 20.4 0.0091 16.6 18.8 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304315267|ref|YP_003850414.1| - 0.016 15.2 5.0 0.016 15.2 5.0 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304315267|ref|YP_003850414.1| - 0.021 15.8 19.1 0.13 13.2 16.8 3.2 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|304315267|ref|YP_003850414.1| - 0.026 15.5 3.8 0.026 15.5 3.8 3.8 3 1 1 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|304315267|ref|YP_003850414.1| - 0.028 14.6 12.2 0.072 13.3 0.2 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|304315267|ref|YP_003850414.1| - 0.036 14.9 18.4 0.21 12.5 6.3 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain Esterase_phd PF10503.9 gi|304315267|ref|YP_003850414.1| - 0.052 13.0 0.0 0.088 12.3 0.0 1.3 1 0 0 1 1 1 0 Esterase PHB depolymerase Fer4_13 PF13370.6 gi|304315267|ref|YP_003850414.1| - 0.24 11.9 19.8 0.31 11.6 5.4 3.2 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|304315267|ref|YP_003850414.1| - 6 7.1 21.0 8e+02 0.3 20.5 3.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain Molybdop_Fe4S4 PF04879.16 gi|304315268|ref|YP_003850415.1| - 2.4e-11 43.4 2.4 4e-11 42.7 2.4 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molybdopterin PF00384.22 gi|304315268|ref|YP_003850415.1| - 9.8e-08 31.4 0.0 2.1e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase SpoIIAA-like PF11964.8 gi|304315268|ref|YP_003850415.1| - 0.024 15.7 0.0 0.047 14.7 0.0 1.4 1 0 0 1 1 1 0 SpoIIAA-like SRP54_N PF02881.19 gi|304315268|ref|YP_003850415.1| - 0.13 12.5 0.1 0.25 11.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, helical bundle domain MRAP PF15183.6 gi|304315270|ref|YP_003850417.1| - 0.03 14.3 0.1 0.031 14.2 0.1 1.0 1 0 0 1 1 1 0 Melanocortin-2 receptor accessory protein family HlyIII PF03006.20 gi|304315270|ref|YP_003850417.1| - 0.056 13.2 0.1 0.057 13.1 0.1 1.0 1 0 0 1 1 1 0 Haemolysin-III related HMD PF03201.16 gi|304315271|ref|YP_003850418.1| - 5.3e-41 138.8 0.3 1.3e-40 137.5 0.3 1.7 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.15 gi|304315271|ref|YP_003850418.1| - 0.052 13.7 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Radical_SAM PF04055.21 gi|304315272|ref|YP_003850419.1| - 4.1e-12 46.8 0.2 1e-11 45.5 0.2 1.6 2 0 0 2 2 2 1 Radical SAM superfamily BATS PF06968.13 gi|304315272|ref|YP_003850419.1| - 4.7e-08 33.1 0.0 9.3e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain DUF3236 PF11576.8 gi|304315273|ref|YP_003850420.1| - 1.3e-71 239.2 0.0 1.5e-71 239.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3236) DUF1188 PF06690.11 gi|304315274|ref|YP_003850421.1| - 1.1e-92 310.1 0.0 1.2e-92 309.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) NIF3 PF01784.18 gi|304315275|ref|YP_003850422.1| - 1.6e-28 100.0 0.0 1.4e-23 83.9 0.0 2.0 1 1 1 2 2 2 2 NIF3 (NGG1p interacting factor 3) ThiF PF00899.21 gi|304315276|ref|YP_003850423.1| - 1.6e-05 24.4 0.1 7e-05 22.3 0.1 1.9 1 1 0 1 1 1 1 ThiF family TrkA_N PF02254.18 gi|304315276|ref|YP_003850423.1| - 0.1 12.8 0.2 1.8 8.8 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain Biotin_lipoyl_2 PF13533.6 gi|304315276|ref|YP_003850423.1| - 0.14 12.0 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Biotin-lipoyl like UPF0254 PF06787.11 gi|304315277|ref|YP_003850424.1| - 1.4e-64 216.8 0.0 1.5e-64 216.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0254) CinA PF02464.17 gi|304315277|ref|YP_003850424.1| - 0.00071 19.2 0.2 0.016 14.8 0.1 2.2 2 0 0 2 2 2 1 Competence-damaged protein ABC_tran PF00005.27 gi|304315278|ref|YP_003850425.1| - 1e-08 35.8 0.0 1.5e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|304315278|ref|YP_003850425.1| - 0.069 12.9 0.1 0.085 12.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system UPF0051 PF01458.17 gi|304315279|ref|YP_003850426.1| - 2e-55 187.9 0.3 2.9e-55 187.3 0.3 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Aldolase PF01081.19 gi|304315279|ref|YP_003850426.1| - 0.061 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 KDPG and KHG aldolase PRC PF05239.16 gi|304315280|ref|YP_003850427.1| - 8.4e-11 41.8 3.6 1.3e-10 41.2 3.6 1.3 1 1 0 1 1 1 1 PRC-barrel domain NTP_transf_3 PF12804.7 gi|304315281|ref|YP_003850428.1| - 1.5e-20 74.2 0.0 1.7e-20 74.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|304315281|ref|YP_003850428.1| - 8.2e-12 45.3 0.0 1.1e-11 44.9 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|304315281|ref|YP_003850428.1| - 3.6e-07 30.0 0.0 4.3e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.19 gi|304315281|ref|YP_003850428.1| - 1.1e-06 28.7 0.0 1.2e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase CofC PF01983.16 gi|304315281|ref|YP_003850428.1| - 0.034 13.3 0.0 0.06 12.5 0.0 1.4 1 0 0 1 1 1 0 Guanylyl transferase CofC like DUF2064 PF09837.9 gi|304315281|ref|YP_003850428.1| - 0.054 13.3 0.0 0.078 12.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) DUF4029 PF13221.6 gi|304315281|ref|YP_003850428.1| - 0.09 13.4 0.0 0.15 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4029) DUF2114 PF09887.9 gi|304315282|ref|YP_003850429.1| - 1.2e-223 742.6 0.6 1.4e-223 742.3 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Usp PF00582.26 gi|304315283|ref|YP_003850430.1| - 3.4e-29 102.2 0.1 3.8e-29 102.0 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Na_Ca_ex PF01699.24 gi|304315284|ref|YP_003850431.1| - 7.2e-55 185.1 38.1 2.1e-28 99.2 11.4 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF3488 PF11992.8 gi|304315284|ref|YP_003850431.1| - 0.015 14.2 1.2 0.015 14.2 1.2 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF3488) Glycophorin_A PF01102.18 gi|304315284|ref|YP_003850431.1| - 0.25 11.6 3.4 12 6.1 0.0 3.6 3 0 0 3 3 3 0 Glycophorin A MtrH PF02007.18 gi|304315285|ref|YP_003850432.1| - 1.3e-156 520.2 1.7 1.5e-156 520.0 1.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrG PF04210.13 gi|304315286|ref|YP_003850433.1| - 1.1e-30 105.2 1.1 1.4e-30 104.9 1.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G MtrF PF09472.10 gi|304315287|ref|YP_003850434.1| - 6.2e-28 96.0 1.8 7.1e-28 95.8 1.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) SpecificRecomb PF10136.9 gi|304315287|ref|YP_003850434.1| - 0.029 12.7 0.2 0.031 12.6 0.2 1.0 1 0 0 1 1 1 0 Site-specific recombinase MtrA PF04208.14 gi|304315288|ref|YP_003850435.1| - 4.7e-88 293.3 3.3 6.7e-88 292.8 3.3 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|304315288|ref|YP_003850435.1| - 3.3e-05 23.2 0.6 6e-05 22.3 0.6 1.4 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrB PF05440.12 gi|304315289|ref|YP_003850436.1| - 4.3e-37 126.4 0.1 4.8e-37 126.3 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrG PF04210.13 gi|304315289|ref|YP_003850436.1| - 3.9 7.4 6.0 1.7 8.5 1.8 2.2 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G MtrC PF04211.13 gi|304315290|ref|YP_003850437.1| - 4.9e-107 357.0 29.0 5.5e-107 356.8 29.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C DUF1294 PF06961.13 gi|304315290|ref|YP_003850437.1| - 1.7 8.9 9.2 0.43 10.9 0.5 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF1294) MtrD PF04207.12 gi|304315291|ref|YP_003850438.1| - 1.1e-98 329.3 34.7 1.2e-98 329.1 34.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrE PF04206.12 gi|304315292|ref|YP_003850439.1| - 8.8e-135 448.3 14.3 1e-134 448.1 14.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E DUF4781 PF16013.5 gi|304315292|ref|YP_003850439.1| - 0.11 11.2 0.4 0.16 10.7 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) T4BSS_DotI_IcmL PF11393.8 gi|304315292|ref|YP_003850439.1| - 0.2 11.1 0.5 0.3 10.5 0.5 1.2 1 0 0 1 1 1 0 Type-IV b secretion system, inner-membrane complex component DUF4191 PF13829.6 gi|304315292|ref|YP_003850439.1| - 2.2 7.6 4.7 5.9 6.2 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) RseC_MucC PF04246.12 gi|304315292|ref|YP_003850439.1| - 3.3 7.7 6.7 0.69 9.9 0.3 2.7 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC MCR_alpha_N PF02745.15 gi|304315293|ref|YP_003850440.1| - 9.2e-150 497.4 0.6 1.2e-149 497.0 0.6 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|304315293|ref|YP_003850440.1| - 1.8e-68 228.8 3.3 4e-68 227.7 3.3 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_gamma PF02240.16 gi|304315294|ref|YP_003850441.1| - 1.2e-135 450.5 1.3 1.3e-135 450.3 1.3 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.12 gi|304315295|ref|YP_003850442.1| - 0.00032 19.9 0.2 0.00067 18.8 0.2 1.4 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.14 gi|304315296|ref|YP_003850443.1| - 6.2e-51 172.0 0.6 1e-50 171.3 0.6 1.3 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.18 gi|304315297|ref|YP_003850444.1| - 2.1e-141 469.7 6.1 3.1e-141 469.2 6.1 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|304315297|ref|YP_003850444.1| - 2.8e-86 287.8 1.6 4.6e-86 287.1 1.6 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain Radical_SAM PF04055.21 gi|304315298|ref|YP_003850445.1| - 3.1e-16 60.2 0.2 8.2e-16 58.8 0.2 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|304315299|ref|YP_003850446.1| - 2.3e-31 109.4 0.1 8.3e-31 107.6 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|304315299|ref|YP_003850446.1| - 1.9e-09 37.6 0.1 2.2e-08 34.2 0.1 2.4 1 1 0 1 1 1 1 B12 binding domain DUF134 PF02001.16 gi|304315300|ref|YP_003850447.1| - 4.2e-41 139.5 0.1 5.8e-41 139.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF134 HypA PF01155.19 gi|304315300|ref|YP_003850447.1| - 2.3e-05 24.4 9.6 0.0005 20.1 0.0 2.2 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Sigma70_r4_2 PF08281.12 gi|304315300|ref|YP_003850447.1| - 0.00011 21.9 0.0 0.00019 21.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|304315300|ref|YP_003850447.1| - 0.0018 18.0 0.1 0.0029 17.4 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|304315300|ref|YP_003850447.1| - 0.025 14.1 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_1 PF00126.27 gi|304315300|ref|YP_003850447.1| - 0.026 14.5 0.0 0.04 13.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_37 PF13744.6 gi|304315300|ref|YP_003850447.1| - 0.028 14.4 0.0 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Zn_Tnp_IS91 PF14319.6 gi|304315300|ref|YP_003850447.1| - 0.033 14.2 5.8 1.7 8.8 0.0 2.4 2 0 0 2 2 2 0 Transposase zinc-binding domain tRNA-synt_1g PF09334.11 gi|304315300|ref|YP_003850447.1| - 0.035 12.9 0.0 0.048 12.4 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (M) Zn-ribbon_8 PF09723.10 gi|304315300|ref|YP_003850447.1| - 0.049 13.7 1.9 0.049 13.7 1.9 3.0 2 1 1 3 3 3 0 Zinc ribbon domain HTH_29 PF13551.6 gi|304315300|ref|YP_003850447.1| - 0.069 13.2 0.8 0.095 12.7 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix UPF0175 PF03683.13 gi|304315300|ref|YP_003850447.1| - 0.084 12.6 0.0 0.37 10.5 0.0 1.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0175) Sigma70_ECF PF07638.11 gi|304315300|ref|YP_003850447.1| - 0.089 12.7 0.1 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 ECF sigma factor TFIIS_C PF01096.18 gi|304315300|ref|YP_003850447.1| - 0.47 10.4 18.4 1.9 8.4 0.5 4.2 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) TackOD1 PF18551.1 gi|304315300|ref|YP_003850447.1| - 0.58 9.8 6.9 0.53 9.9 0.1 2.3 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 A2L_zn_ribbon PF08792.10 gi|304315300|ref|YP_003850447.1| - 0.65 9.8 13.1 8.5 6.2 0.7 4.3 4 0 0 4 4 4 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|304315300|ref|YP_003850447.1| - 2.3 8.2 14.2 2.4 8.2 0.1 3.5 3 1 0 3 3 3 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|304315300|ref|YP_003850447.1| - 3.3 7.2 13.2 0.78 9.2 1.4 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Metallophos PF00149.28 gi|304315301|ref|YP_003850448.1| - 1.9e-15 57.9 0.1 4.8e-15 56.6 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|304315301|ref|YP_003850448.1| - 1.5e-08 35.0 0.0 2.1e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|304315301|ref|YP_003850448.1| - 0.12 11.7 0.0 8.3 5.6 0.0 2.3 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Kinocilin PF15033.6 gi|304315301|ref|YP_003850448.1| - 0.19 11.4 0.4 0.5 10.0 0.4 1.8 1 0 0 1 1 1 0 Kinocilin protein MCR_C PF04609.12 gi|304315302|ref|YP_003850449.1| - 7.3e-129 428.6 0.4 8.5e-129 428.4 0.4 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C 2-ph_phosp PF04029.14 gi|304315304|ref|YP_003850451.1| - 6.4e-57 192.3 0.0 7.5e-57 192.1 0.0 1.0 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase TraB PF01963.17 gi|304315305|ref|YP_003850452.1| - 5.9e-24 85.4 0.0 7.9e-24 85.0 0.0 1.1 1 0 0 1 1 1 1 TraB family DDE_Tnp_1_4 PF13701.6 gi|304315305|ref|YP_003850452.1| - 0.18 10.0 0.0 0.52 8.5 0.0 1.5 1 1 1 2 2 2 0 Transposase DDE domain group 1 DUF1922 PF09082.10 gi|304315306|ref|YP_003850453.1| - 1.7e-33 114.7 3.5 1.8e-33 114.6 3.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) Toxin_35 PF10530.9 gi|304315306|ref|YP_003850453.1| - 0.01 15.8 1.5 0.016 15.2 1.5 1.3 1 0 0 1 1 1 0 Toxin with inhibitor cystine knot ICK or Knottin scaffold GTP_EFTU PF00009.27 gi|304315307|ref|YP_003850454.1| - 1.3e-32 112.9 0.0 2.3e-32 112.1 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|304315307|ref|YP_003850454.1| - 8e-12 45.4 3.5 9e-12 45.2 0.6 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|304315307|ref|YP_003850454.1| - 8.9e-05 22.8 0.0 0.00023 21.4 0.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain MMR_HSR1 PF01926.23 gi|304315307|ref|YP_003850454.1| - 0.0018 18.4 0.0 0.0071 16.4 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|304315307|ref|YP_003850454.1| - 0.0072 16.1 0.1 0.097 12.4 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|304315307|ref|YP_003850454.1| - 0.036 14.0 0.0 1 9.2 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase AlbA_2 PF04326.14 gi|304315307|ref|YP_003850454.1| - 0.057 13.8 0.1 0.22 11.9 0.1 2.0 1 1 0 1 1 1 0 Putative DNA-binding domain ATP_bind_3 PF01171.20 gi|304315308|ref|YP_003850455.1| - 2e-12 47.2 0.0 9.2e-12 45.1 0.0 1.9 1 1 0 1 1 1 1 PP-loop family zn-ribbon_14 PF16503.5 gi|304315308|ref|YP_003850455.1| - 0.0054 16.2 0.9 0.012 15.2 0.9 1.5 1 0 0 1 1 1 1 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|304315308|ref|YP_003850455.1| - 0.014 14.2 0.0 0.018 13.8 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase C1_2 PF03107.16 gi|304315308|ref|YP_003850455.1| - 0.088 13.1 0.3 0.18 12.1 0.3 1.5 1 0 0 1 1 1 0 C1 domain Thiamine_BP PF01910.17 gi|304315309|ref|YP_003850456.1| - 1.6e-31 108.1 0.1 1.8e-31 107.9 0.1 1.0 1 0 0 1 1 1 1 Thiamine-binding protein ParB_C PF18064.1 gi|304315309|ref|YP_003850456.1| - 0.087 13.0 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 Centromere-binding protein ParB C-terminal DegT_DnrJ_EryC1 PF01041.17 gi|304315310|ref|YP_003850457.1| - 3.4e-146 487.2 0.0 3.8e-146 487.0 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|304315310|ref|YP_003850457.1| - 1.8e-08 34.0 0.0 8.6e-08 31.7 0.0 2.1 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|304315310|ref|YP_003850457.1| - 1.6e-07 30.9 0.1 3.6e-07 29.7 0.1 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|304315310|ref|YP_003850457.1| - 2e-05 23.3 0.0 2.9e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme CPBP PF02517.16 gi|304315311|ref|YP_003850458.1| - 3.8e-11 43.2 7.4 3.8e-11 43.2 7.4 2.6 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease Epiglycanin_C PF14654.6 gi|304315311|ref|YP_003850458.1| - 0.96 9.5 3.3 2.9 8.0 0.6 2.7 2 0 0 2 2 2 0 Mucin, catalytic, TM and cytoplasmic tail region TRM PF02005.16 gi|304315312|ref|YP_003850459.1| - 8e-138 459.7 0.0 9.2e-138 459.5 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|304315312|ref|YP_003850459.1| - 2.4e-05 23.9 0.0 3.5e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|304315312|ref|YP_003850459.1| - 0.0014 18.4 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein RNHCP PF12647.7 gi|304315312|ref|YP_003850459.1| - 0.024 14.6 0.3 0.052 13.5 0.3 1.5 1 0 0 1 1 1 0 RNHCP domain zf-C3HC4_3 PF13920.6 gi|304315312|ref|YP_003850459.1| - 0.071 13.0 0.4 0.15 11.9 0.4 1.5 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) LexA_DNA_bind PF01726.16 gi|304315312|ref|YP_003850459.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain DUF2188 PF09954.9 gi|304315313|ref|YP_003850460.1| - 0.004 17.3 0.0 0.0069 16.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2188) DUF4013 PF13197.6 gi|304315314|ref|YP_003850461.1| - 4.4e-06 26.6 0.5 1.2e-05 25.2 0.3 1.7 1 1 1 2 2 2 2 Protein of unknown function (DUF4013) DUF4013 PF13197.6 gi|304315315|ref|YP_003850462.1| - 7.3e-23 81.2 23.3 7.3e-23 81.2 23.3 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF3624 PF12292.8 gi|304315315|ref|YP_003850462.1| - 0.1 13.0 1.4 0.15 12.5 0.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3624) AcrZ PF10766.9 gi|304315315|ref|YP_003850462.1| - 1.2 8.8 0.0 1.2 8.8 0.0 3.4 4 1 0 4 4 4 0 Multidrug efflux pump-associated protein AcrZ Otopetrin PF03189.13 gi|304315315|ref|YP_003850462.1| - 2.9 6.6 7.6 3.2 6.5 7.6 1.1 1 0 0 1 1 1 0 Otopetrin DUF2231 PF09990.9 gi|304315315|ref|YP_003850462.1| - 3.3 8.2 11.8 1.4 9.4 1.7 2.9 2 1 1 3 3 3 0 Predicted membrane protein (DUF2231) HTH_24 PF13412.6 gi|304315316|ref|YP_003850463.1| - 5.6e-16 57.8 0.6 9.4e-16 57.1 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|304315316|ref|YP_003850463.1| - 8.9e-15 54.2 0.2 1.7e-14 53.3 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|304315316|ref|YP_003850463.1| - 7e-13 48.4 0.0 1e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|304315316|ref|YP_003850463.1| - 7.4e-06 25.8 0.1 1.2e-05 25.2 0.1 1.3 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.12 gi|304315316|ref|YP_003850463.1| - 3.9e-05 23.2 0.0 7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|304315316|ref|YP_003850463.1| - 0.00028 20.6 0.1 0.00057 19.6 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|304315316|ref|YP_003850463.1| - 0.00056 19.7 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|304315316|ref|YP_003850463.1| - 0.0006 19.5 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.7 gi|304315316|ref|YP_003850463.1| - 0.00063 19.8 0.0 0.00094 19.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|304315316|ref|YP_003850463.1| - 0.00065 19.5 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|304315316|ref|YP_003850463.1| - 0.0013 18.6 0.1 0.0041 17.0 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|304315316|ref|YP_003850463.1| - 0.0027 17.5 0.0 0.0045 16.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain FeoC PF09012.10 gi|304315316|ref|YP_003850463.1| - 0.004 17.2 0.0 0.0074 16.3 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_38 PF13936.6 gi|304315316|ref|YP_003850463.1| - 0.004 16.9 0.0 0.0078 15.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|304315316|ref|YP_003850463.1| - 0.0041 17.6 0.0 0.0081 16.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain RuvB_C PF05491.13 gi|304315316|ref|YP_003850463.1| - 0.0047 16.8 0.1 0.01 15.7 0.1 1.4 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain MarR PF01047.22 gi|304315316|ref|YP_003850463.1| - 0.0058 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|304315316|ref|YP_003850463.1| - 0.0076 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|304315316|ref|YP_003850463.1| - 0.011 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|304315316|ref|YP_003850463.1| - 0.023 14.1 0.0 0.037 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 E3_UFM1_ligase PF09743.9 gi|304315316|ref|YP_003850463.1| - 0.045 13.4 0.4 0.087 12.4 0.2 1.5 2 0 0 2 2 2 0 E3 UFM1-protein ligase 1 NdhM PF10664.9 gi|304315316|ref|YP_003850463.1| - 0.052 13.8 0.1 16 5.8 0.0 2.4 2 1 0 2 2 2 0 Cyanobacterial and plastid NDH-1 subunit M CM_2 PF01817.21 gi|304315316|ref|YP_003850463.1| - 0.063 13.6 0.5 0.18 12.2 0.5 1.7 1 0 0 1 1 1 0 Chorismate mutase type II RPA_C PF08784.11 gi|304315316|ref|YP_003850463.1| - 0.14 12.8 0.1 2.5 8.8 0.1 2.1 2 0 0 2 2 2 0 Replication protein A C terminal HTH_29 PF13551.6 gi|304315316|ref|YP_003850463.1| - 0.15 12.1 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix LexA_DNA_bind PF01726.16 gi|304315316|ref|YP_003850463.1| - 0.18 11.6 0.1 1.3 8.9 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain Hist_deacetyl PF00850.19 gi|304315317|ref|YP_003850464.1| - 3.6e-75 253.3 0.0 6.5e-75 252.5 0.0 1.4 1 1 0 1 1 1 1 Histone deacetylase domain O_Spanin_T7 PF17531.2 gi|304315317|ref|YP_003850464.1| - 0.12 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 outer-membrane spanin sub-unit DUF2100 PF09873.9 gi|304315318|ref|YP_003850465.1| - 1e-63 215.1 0.7 1.2e-63 214.8 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2100) Thump_like PF18096.1 gi|304315318|ref|YP_003850465.1| - 0.086 12.8 0.0 0.24 11.4 0.0 1.7 1 0 0 1 1 1 0 THUMP domain-like GCHY-1 PF02649.14 gi|304315319|ref|YP_003850466.1| - 6.7e-83 278.2 1.3 7.6e-83 278.0 1.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|304315319|ref|YP_003850466.1| - 0.0065 17.0 0.8 0.051 14.1 0.0 2.6 3 1 1 4 4 4 1 Dihydroneopterin aldolase DUF3510 PF12022.8 gi|304315319|ref|YP_003850466.1| - 0.025 15.0 0.1 2.2 8.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3510) DUF1677 PF07911.13 gi|304315319|ref|YP_003850466.1| - 0.76 10.2 3.9 3.9 7.9 0.1 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF1677) DUF2120 PF09893.9 gi|304315320|ref|YP_003850467.1| - 2.1e-53 180.1 0.1 2.3e-53 179.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2120) Radical_SAM PF04055.21 gi|304315321|ref|YP_003850468.1| - 3.9e-17 63.1 0.2 7.7e-17 62.2 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily DUF429 PF04250.13 gi|304315322|ref|YP_003850469.1| - 3.4e-11 43.3 0.3 3.7e-10 40.0 0.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF429) Met_10 PF02475.16 gi|304315323|ref|YP_003850470.1| - 4.6e-66 222.4 0.0 5.8e-66 222.0 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|304315323|ref|YP_003850470.1| - 8.8e-06 25.4 0.0 2.6e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|304315323|ref|YP_003850470.1| - 8.8e-06 25.1 0.0 1.1e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_25 PF13649.6 gi|304315323|ref|YP_003850470.1| - 0.00014 22.5 0.0 0.00093 19.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|304315323|ref|YP_003850470.1| - 0.00096 18.8 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|304315323|ref|YP_003850470.1| - 0.004 17.1 0.0 0.0058 16.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|304315323|ref|YP_003850470.1| - 0.031 14.1 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|304315323|ref|YP_003850470.1| - 0.066 12.6 0.0 0.092 12.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) tRNA_U5-meth_tr PF05958.11 gi|304315323|ref|YP_003850470.1| - 0.28 10.1 0.0 0.39 9.6 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DUF1297 PF06973.12 gi|304315324|ref|YP_003850471.1| - 4.8e-85 283.8 0.0 6.3e-85 283.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|304315324|ref|YP_003850471.1| - 2.6e-51 172.7 0.0 3.9e-51 172.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) CPSase_L_D2 PF02786.17 gi|304315324|ref|YP_003850471.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Proteasome PF00227.26 gi|304315325|ref|YP_003850472.1| - 1.2e-59 201.0 1.0 1.3e-59 200.8 1.0 1.0 1 0 0 1 1 1 1 Proteasome subunit KH_7 PF17214.3 gi|304315326|ref|YP_003850473.1| - 6.1e-28 96.6 13.2 2.1e-27 94.9 3.1 3.3 4 0 0 4 4 4 2 KH domain Beta-Casp PF10996.8 gi|304315326|ref|YP_003850473.1| - 1e-23 83.7 0.0 2.7e-23 82.4 0.0 1.8 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_6 PF16661.5 gi|304315326|ref|YP_003850473.1| - 4.1e-16 59.0 0.0 4.9e-15 55.5 0.0 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|304315326|ref|YP_003850473.1| - 1.6e-15 56.8 0.0 3.8e-15 55.6 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|304315326|ref|YP_003850473.1| - 5.3e-12 45.7 0.6 1.2e-11 44.6 0.6 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|304315326|ref|YP_003850473.1| - 1e-11 45.2 1.2 1.3e-10 41.7 1.2 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily KH_2 PF07650.17 gi|304315326|ref|YP_003850473.1| - 0.00057 19.7 8.8 0.012 15.4 0.5 2.8 1 1 1 2 2 2 2 KH domain Lactamase_B_3 PF13483.6 gi|304315326|ref|YP_003850473.1| - 0.0041 17.0 0.2 0.026 14.4 0.2 2.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AIRS_C PF02769.22 gi|304315327|ref|YP_003850474.1| - 4.9e-24 85.2 0.7 1e-23 84.2 0.1 1.8 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|304315327|ref|YP_003850474.1| - 1e-15 58.2 2.4 1.9e-15 57.3 2.4 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Ldh_2 PF02615.14 gi|304315328|ref|YP_003850475.1| - 1.4e-119 399.2 0.6 1.6e-119 399.0 0.6 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase TPP_enzyme_N PF02776.18 gi|304315329|ref|YP_003850476.1| - 1.8e-10 40.7 0.1 2e-10 40.6 0.1 1.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|304315330|ref|YP_003850477.1| - 2.3e-17 63.2 0.0 7.7e-17 61.5 0.0 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DNA_pol_B_exo1 PF03104.19 gi|304315331|ref|YP_003850478.1| - 1.1e-44 152.9 0.0 2.2e-44 152.0 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B PF00136.21 gi|304315331|ref|YP_003850478.1| - 6.2e-37 127.4 0.0 9.8e-37 126.7 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo2 PF10108.9 gi|304315331|ref|YP_003850478.1| - 2.9e-15 56.5 0.0 4.4e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|304315331|ref|YP_003850478.1| - 6.1e-11 42.6 0.0 1.4e-10 41.4 0.0 1.7 1 1 0 1 1 1 1 RNase_H superfamily DNA_pol_B_2 PF03175.13 gi|304315331|ref|YP_003850478.1| - 0.00017 20.6 0.0 0.00026 20.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase type B, organellar and viral DNA_pol_A_exo1 PF01612.20 gi|304315331|ref|YP_003850478.1| - 0.021 14.6 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 3'-5' exonuclease PMBR PF09373.10 gi|304315332|ref|YP_003850479.1| - 3.2e-21 74.4 4.0 2.9e-07 30.3 0.1 5.0 4 0 0 4 4 4 4 Pseudomurein-binding repeat PKD PF00801.20 gi|304315332|ref|YP_003850479.1| - 4.2e-08 32.9 2.6 1.1e-07 31.6 2.6 1.7 1 0 0 1 1 1 1 PKD domain CoA_binding_3 PF13727.6 gi|304315333|ref|YP_003850480.1| - 0.0098 15.9 5.5 1 9.4 1.0 2.1 2 0 0 2 2 2 2 CoA-binding domain BacA PF02673.18 gi|304315334|ref|YP_003850481.1| - 0.044 13.5 2.0 0.046 13.4 2.0 1.1 1 0 0 1 1 1 0 Bacitracin resistance protein BacA DUF4131 PF13567.6 gi|304315334|ref|YP_003850481.1| - 0.3 10.7 1.7 0.38 10.4 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) HeLo PF14479.6 gi|304315335|ref|YP_003850482.1| - 0.22 11.3 0.0 0.33 10.8 0.0 1.2 1 0 0 1 1 1 0 Prion-inhibition and propagation TPR_1 PF00515.28 gi|304315336|ref|YP_003850483.1| - 8.3e-50 164.7 28.8 5.3e-14 51.4 0.2 6.0 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|304315336|ref|YP_003850483.1| - 1.6e-42 140.2 17.4 2.3e-10 39.8 0.1 5.8 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|304315336|ref|YP_003850483.1| - 1.3e-39 134.3 6.4 2.8e-13 49.9 0.3 3.9 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|304315336|ref|YP_003850483.1| - 8.9e-33 111.7 22.4 3.3e-09 36.3 0.3 5.3 2 1 3 5 5 5 5 TPR repeat TPR_8 PF13181.6 gi|304315336|ref|YP_003850483.1| - 2.8e-32 108.2 27.0 5.1e-10 38.8 0.2 6.0 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|304315336|ref|YP_003850483.1| - 4e-28 95.7 17.7 6.2e-08 32.5 0.2 5.5 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|304315336|ref|YP_003850483.1| - 6e-21 74.4 0.0 2.6e-07 30.7 0.0 3.7 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|304315336|ref|YP_003850483.1| - 6.7e-21 73.2 0.0 0.0025 18.5 0.0 5.1 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|304315336|ref|YP_003850483.1| - 3.5e-20 70.5 0.4 0.0002 21.1 0.0 5.3 4 1 1 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|304315336|ref|YP_003850483.1| - 4.4e-17 62.4 2.2 9.4e-08 32.5 0.3 2.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|304315336|ref|YP_003850483.1| - 1.8e-16 60.5 0.0 6.1e-08 33.2 0.0 3.8 2 1 1 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|304315336|ref|YP_003850483.1| - 4.8e-15 54.9 1.5 0.0044 16.9 0.2 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|304315336|ref|YP_003850483.1| - 1.3e-13 50.6 4.5 0.025 15.2 0.1 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|304315336|ref|YP_003850483.1| - 2.6e-13 50.0 27.1 3.6e-07 30.3 3.8 2.6 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|304315336|ref|YP_003850483.1| - 3.1e-11 42.9 6.3 3.2e-05 23.0 0.7 3.3 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|304315336|ref|YP_003850483.1| - 3.6e-11 43.0 19.7 0.00097 19.2 0.4 5.1 2 2 3 5 5 5 4 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.18 gi|304315336|ref|YP_003850483.1| - 2.7e-09 37.0 21.5 0.031 14.4 0.5 5.1 4 1 1 5 5 5 4 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|304315336|ref|YP_003850483.1| - 2e-06 28.0 0.4 0.037 14.1 0.0 3.5 1 1 2 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_3 PF07720.12 gi|304315336|ref|YP_003850483.1| - 2.7e-06 27.2 10.0 0.81 9.7 0.0 5.3 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_15 PF13429.6 gi|304315336|ref|YP_003850483.1| - 2.4e-05 23.7 0.9 0.0026 17.0 0.4 2.3 1 1 1 2 2 2 1 Tetratricopeptide repeat EST1_DNA_bind PF10373.9 gi|304315336|ref|YP_003850483.1| - 7.4e-05 22.4 0.0 0.19 11.2 0.0 3.9 4 0 0 4 4 4 1 Est1 DNA/RNA binding domain PPR PF01535.20 gi|304315336|ref|YP_003850483.1| - 8.3e-05 22.6 5.0 6 7.3 0.0 5.1 5 0 0 5 5 5 0 PPR repeat DUF5113 PF17140.4 gi|304315336|ref|YP_003850483.1| - 0.00013 21.8 15.4 0.65 9.8 0.3 5.1 1 1 5 6 6 6 3 Domain of unknown function (DUF5113) SRP_TPR_like PF17004.5 gi|304315336|ref|YP_003850483.1| - 0.00027 20.9 14.8 0.0012 18.8 0.7 3.2 1 1 3 4 4 4 2 Putative TPR-like repeat HTH_Bact PF18768.1 gi|304315336|ref|YP_003850483.1| - 0.00029 20.3 6.3 4.1 7.0 0.0 4.8 5 0 0 5 5 4 1 Helix-turn-helix bacterial domain NRBF2_MIT PF17169.4 gi|304315336|ref|YP_003850483.1| - 0.00056 20.1 5.0 0.15 12.3 0.0 3.5 1 1 2 3 3 3 1 MIT domain of nuclear receptor-binding factor 2 RPN7 PF10602.9 gi|304315336|ref|YP_003850483.1| - 0.0012 18.6 6.8 0.3 10.8 1.0 3.3 1 1 2 3 3 3 2 26S proteasome subunit RPN7 Rapsyn_N PF10579.9 gi|304315336|ref|YP_003850483.1| - 0.0013 18.8 2.8 3.9 7.6 0.1 3.6 1 1 3 4 4 4 1 Rapsyn N-terminal myristoylation and linker region FAT PF02259.23 gi|304315336|ref|YP_003850483.1| - 0.0025 17.1 5.7 0.025 13.8 5.1 2.7 1 1 0 1 1 1 1 FAT domain SHNi-TPR PF10516.9 gi|304315336|ref|YP_003850483.1| - 0.004 16.6 4.0 5.1 6.6 0.0 4.5 5 0 0 5 5 4 0 SHNi-TPR DUF1824 PF08854.10 gi|304315336|ref|YP_003850483.1| - 0.0045 16.9 0.5 0.26 11.2 0.0 2.9 1 1 1 2 2 2 1 Domain of unknown function (DUF1824) Alkyl_sulf_dimr PF14863.6 gi|304315336|ref|YP_003850483.1| - 0.0063 17.0 3.3 1.1 9.8 0.2 3.1 1 1 2 3 3 3 1 Alkyl sulfatase dimerisation Coatomer_E PF04733.14 gi|304315336|ref|YP_003850483.1| - 0.012 15.0 1.5 0.1 12.0 0.4 2.1 1 1 1 2 2 2 0 Coatomer epsilon subunit DUF4919 PF16266.5 gi|304315336|ref|YP_003850483.1| - 0.059 13.3 5.7 1.9 8.4 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4919) PPR_2 PF13041.6 gi|304315336|ref|YP_003850483.1| - 0.12 12.6 4.5 88 3.4 0.0 4.8 5 0 0 5 5 5 0 PPR repeat family DUF1033 PF06279.11 gi|304315336|ref|YP_003850483.1| - 0.18 12.0 5.0 7.3 6.8 0.1 3.6 1 1 3 4 4 4 0 Protein of unknown function (DUF1033) DUF627 PF04781.12 gi|304315336|ref|YP_003850483.1| - 0.2 11.7 8.3 6.2 6.9 0.2 4.1 1 1 5 6 6 6 0 Protein of unknown function (DUF627) RIG-I_C PF18119.1 gi|304315336|ref|YP_003850483.1| - 0.31 11.0 6.6 1.7 8.6 1.4 2.8 2 1 1 3 3 3 0 RIG-I receptor C-terminal domain Sel1 PF08238.12 gi|304315336|ref|YP_003850483.1| - 1.4 9.7 10.4 42 5.0 0.5 4.6 4 1 1 5 5 4 0 Sel1 repeat TPR_1 PF00515.28 gi|304315338|ref|YP_003850485.1| - 8.8e-112 360.8 50.4 1.3e-13 50.1 0.3 10.1 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_2 PF07719.17 gi|304315338|ref|YP_003850485.1| - 1.3e-90 290.3 42.9 7.4e-11 41.3 1.0 10.1 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_8 PF13181.6 gi|304315338|ref|YP_003850485.1| - 6.9e-81 259.8 37.3 9.3e-10 37.9 0.5 10.2 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_11 PF13414.6 gi|304315338|ref|YP_003850485.1| - 1.4e-75 248.7 40.9 6.7e-11 41.7 1.0 10.1 1 1 9 10 10 10 10 TPR repeat TPR_17 PF13431.6 gi|304315338|ref|YP_003850485.1| - 7.6e-64 207.6 35.8 8.1e-08 32.1 0.5 10.1 11 0 0 11 11 9 9 Tetratricopeptide repeat TPR_12 PF13424.6 gi|304315338|ref|YP_003850485.1| - 6.2e-60 199.4 17.4 6.6e-14 52.0 0.7 7.9 3 3 4 7 7 7 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|304315338|ref|YP_003850485.1| - 1.2e-53 179.5 0.3 2.2e-11 44.2 0.0 6.2 4 2 2 6 6 6 6 Tetratricopeptide repeat TPR_7 PF13176.6 gi|304315338|ref|YP_003850485.1| - 1.1e-51 169.1 10.6 2.3e-05 24.1 0.0 10.1 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_14 PF13428.6 gi|304315338|ref|YP_003850485.1| - 3.5e-50 164.4 11.0 4.7e-06 27.0 0.2 10.1 1 1 9 10 10 10 10 Tetratricopeptide repeat TPR_19 PF14559.6 gi|304315338|ref|YP_003850485.1| - 3.2e-41 139.7 17.4 2e-10 41.0 0.1 5.4 5 1 0 5 5 5 5 Tetratricopeptide repeat TPR_10 PF13374.6 gi|304315338|ref|YP_003850485.1| - 2.2e-35 119.6 21.4 0.00042 20.1 0.2 10.1 10 0 0 10 10 10 8 Tetratricopeptide repeat TPR_9 PF13371.6 gi|304315338|ref|YP_003850485.1| - 3.6e-35 120.0 0.6 9.7e-08 32.1 0.5 6.6 1 1 6 8 8 8 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|304315338|ref|YP_003850485.1| - 4.4e-26 89.7 15.6 0.003 18.1 0.2 9.4 10 0 0 10 10 9 6 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|304315338|ref|YP_003850485.1| - 4.5e-25 87.7 26.4 3.9e-08 33.4 5.6 4.4 3 2 1 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.18 gi|304315338|ref|YP_003850485.1| - 1.3e-22 79.6 30.9 0.0055 16.8 0.5 9.7 7 3 3 10 10 10 7 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|304315338|ref|YP_003850485.1| - 4.8e-16 59.1 8.6 0.14 12.2 0.2 7.3 1 1 7 8 8 8 6 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|304315338|ref|YP_003850485.1| - 1.6e-15 57.1 14.2 0.00077 18.5 0.7 5.6 1 1 5 6 6 6 5 NMDA receptor-regulated protein 1 TPR_5 PF12688.7 gi|304315338|ref|YP_003850485.1| - 2.5e-14 53.5 0.2 6.2e-05 23.2 0.0 4.6 3 2 1 4 4 4 3 Tetratrico peptide repeat TPR_15 PF13429.6 gi|304315338|ref|YP_003850485.1| - 7e-14 51.7 9.2 0.00014 21.2 0.3 6.1 1 1 3 5 5 5 2 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|304315338|ref|YP_003850485.1| - 4.5e-13 49.3 9.6 0.018 14.5 0.7 5.4 1 1 4 5 5 5 5 Coatomer epsilon subunit Fis1_TPR_C PF14853.6 gi|304315338|ref|YP_003850485.1| - 3.8e-11 42.9 35.4 0.017 15.2 0.0 8.3 7 3 3 10 10 8 3 Fis1 C-terminal tetratricopeptide repeat FAT PF02259.23 gi|304315338|ref|YP_003850485.1| - 3e-10 39.9 18.1 0.00063 19.1 0.2 5.4 1 1 5 6 6 6 4 FAT domain SRP_TPR_like PF17004.5 gi|304315338|ref|YP_003850485.1| - 5.7e-10 39.2 17.4 0.0014 18.6 0.8 4.7 3 2 1 4 4 4 3 Putative TPR-like repeat DUF5113 PF17140.4 gi|304315338|ref|YP_003850485.1| - 6.5e-09 35.8 10.0 0.5 10.2 1.6 7.6 2 2 7 9 9 8 2 Domain of unknown function (DUF5113) PPR PF01535.20 gi|304315338|ref|YP_003850485.1| - 4.9e-08 32.7 19.2 2 8.8 0.2 9.7 10 0 0 10 10 10 1 PPR repeat SAICAR_synt PF01259.18 gi|304315338|ref|YP_003850485.1| - 6.6e-08 32.5 1.3 0.21 11.2 0.0 4.8 3 2 1 4 4 4 2 SAICAR synthetase RPN7 PF10602.9 gi|304315338|ref|YP_003850485.1| - 1.5e-07 31.3 14.5 0.55 9.9 1.0 5.9 1 1 3 6 6 6 3 26S proteasome subunit RPN7 NRBF2_MIT PF17169.4 gi|304315338|ref|YP_003850485.1| - 4.8e-07 29.9 22.6 0.26 11.5 0.1 8.7 4 3 4 9 9 9 2 MIT domain of nuclear receptor-binding factor 2 SHNi-TPR PF10516.9 gi|304315338|ref|YP_003850485.1| - 2.5e-06 26.8 20.5 0.065 12.7 0.0 8.0 8 0 0 8 8 8 1 SHNi-TPR HTH_Bact PF18768.1 gi|304315338|ref|YP_003850485.1| - 2.8e-06 26.8 16.1 2.2 7.9 0.0 9.1 11 0 0 11 11 9 1 Helix-turn-helix bacterial domain Sel1 PF08238.12 gi|304315338|ref|YP_003850485.1| - 4.6e-06 27.1 28.3 3.6 8.4 0.0 9.5 10 1 0 10 10 9 0 Sel1 repeat UPF0122 PF04297.14 gi|304315338|ref|YP_003850485.1| - 1.5e-05 25.1 19.6 1.5 9.1 0.0 7.7 2 2 7 9 9 9 2 Putative helix-turn-helix protein, YlxM / p13 like Rapsyn_N PF10579.9 gi|304315338|ref|YP_003850485.1| - 0.00018 21.5 4.6 0.2 11.8 0.1 5.2 3 2 1 5 5 5 1 Rapsyn N-terminal myristoylation and linker region Glyco_hydro_65m PF03632.15 gi|304315338|ref|YP_003850485.1| - 0.00025 20.0 0.0 2.7 6.7 0.0 3.5 2 1 1 3 3 3 1 Glycosyl hydrolase family 65 central catalytic domain BTAD PF03704.17 gi|304315338|ref|YP_003850485.1| - 0.00045 20.7 11.7 0.77 10.2 0.6 5.2 1 1 1 3 3 3 2 Bacterial transcriptional activator domain TPR_20 PF14561.6 gi|304315338|ref|YP_003850485.1| - 0.00054 20.2 6.5 0.1 13.0 0.1 4.2 1 1 4 6 6 6 1 Tetratricopeptide repeat MAS20 PF02064.15 gi|304315338|ref|YP_003850485.1| - 0.00073 19.6 3.6 1.6 8.8 0.0 4.6 3 3 2 5 5 4 1 MAS20 protein import receptor TPR_4 PF07721.14 gi|304315338|ref|YP_003850485.1| - 0.00098 19.5 0.0 36 5.4 0.0 5.6 7 0 0 7 7 5 0 Tetratricopeptide repeat PRTase_1 PF11202.8 gi|304315338|ref|YP_003850485.1| - 0.0021 17.4 0.2 12 5.1 0.0 4.3 2 1 0 4 4 4 0 Phosphoribosyl transferase (PRTase) DUF4326 PF14216.6 gi|304315338|ref|YP_003850485.1| - 0.0031 18.2 6.9 24 5.7 0.4 5.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4326) ChAPs PF09295.10 gi|304315338|ref|YP_003850485.1| - 0.0061 15.6 8.2 0.14 11.1 0.1 4.2 1 1 5 6 6 6 1 ChAPs (Chs5p-Arf1p-binding proteins) DUF627 PF04781.12 gi|304315338|ref|YP_003850485.1| - 0.0085 16.1 8.3 0.35 10.9 0.2 5.0 5 1 1 6 6 5 1 Protein of unknown function (DUF627) TPR_3 PF07720.12 gi|304315338|ref|YP_003850485.1| - 0.025 14.6 19.2 7.2 6.7 0.1 7.0 8 0 0 8 8 6 0 Tetratricopeptide repeat BPS PF08947.10 gi|304315338|ref|YP_003850485.1| - 0.045 13.6 5.2 22 4.9 0.0 5.1 4 2 2 6 6 6 0 BPS (Between PH and SH2) PknG_TPR PF16918.5 gi|304315338|ref|YP_003850485.1| - 0.051 12.3 0.1 0.46 9.2 0.0 2.3 1 1 1 2 2 2 0 Protein kinase G tetratricopeptide repeat DUF4919 PF16266.5 gi|304315338|ref|YP_003850485.1| - 0.08 12.9 1.0 0.37 10.7 0.2 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4919) Mqo PF06039.15 gi|304315338|ref|YP_003850485.1| - 0.13 10.8 1.8 6.9 5.1 0.1 3.1 1 1 0 3 3 3 0 Malate:quinone oxidoreductase (Mqo) Katanin_con80 PF13925.6 gi|304315338|ref|YP_003850485.1| - 0.15 12.1 0.3 5.3 7.1 0.1 2.6 2 0 0 2 2 2 0 con80 domain of Katanin Phage_tail_X PF05489.12 gi|304315338|ref|YP_003850485.1| - 0.17 11.6 0.0 12 5.6 0.0 2.6 2 0 0 2 2 2 0 Phage Tail Protein X DUF357 PF04010.13 gi|304315338|ref|YP_003850485.1| - 0.34 11.0 5.3 5.8 7.1 0.1 4.2 5 2 1 6 6 3 0 Protein of unknown function (DUF357) Pepsin-I3 PF06394.13 gi|304315338|ref|YP_003850485.1| - 0.5 10.6 12.3 9.5 6.5 0.2 4.8 5 1 1 6 6 4 0 Pepsin inhibitor-3-like repeated domain Sda PF08970.10 gi|304315338|ref|YP_003850485.1| - 0.54 10.0 34.8 0.77 9.6 0.7 7.8 8 1 0 8 8 7 0 Sporulation inhibitor A RIG-I_C PF18119.1 gi|304315338|ref|YP_003850485.1| - 1.6 8.7 8.9 32 4.5 0.0 4.5 4 2 0 4 4 4 0 RIG-I receptor C-terminal domain YnfE PF17452.2 gi|304315338|ref|YP_003850485.1| - 2.6 8.4 23.8 15 6.0 0.4 7.3 7 3 3 10 10 7 0 Uncharacterized YnfE-like DUF1385 PF07136.11 gi|304315338|ref|YP_003850485.1| - 3.1 7.0 3.6 34 3.6 0.1 2.8 3 0 0 3 3 2 0 Protein of unknown function (DUF1385) D5_N PF08706.11 gi|304315338|ref|YP_003850485.1| - 10 6.4 10.3 17 5.6 2.2 2.9 2 1 1 3 3 2 0 D5 N terminal like RIFIN PF02009.16 gi|304315340|ref|YP_003850487.1| - 0.58 10.0 3.7 0.64 9.9 3.7 1.1 1 0 0 1 1 1 0 Rifin AI-2E_transport PF01594.16 gi|304315341|ref|YP_003850488.1| - 4.8e-65 219.9 35.3 5.8e-65 219.6 35.3 1.1 1 0 0 1 1 1 1 AI-2E family transporter PRT_C PF08372.10 gi|304315341|ref|YP_003850488.1| - 0.31 10.8 6.1 4.2 7.1 2.4 2.5 2 1 1 3 3 3 0 Plant phosphoribosyltransferase C-terminal DHODB_Fe-S_bind PF10418.9 gi|304315342|ref|YP_003850489.1| - 3e-12 46.1 5.1 6.9e-12 45.0 5.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|304315342|ref|YP_003850489.1| - 8.9e-06 26.3 0.3 2.6e-05 24.8 0.3 1.8 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|304315342|ref|YP_003850489.1| - 0.0036 17.6 0.0 0.0065 16.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain DHO_dh PF01180.21 gi|304315343|ref|YP_003850490.1| - 1.2e-69 234.8 0.2 1.4e-69 234.6 0.2 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|304315343|ref|YP_003850490.1| - 3.2e-16 59.3 0.1 1.9e-12 46.9 0.0 2.0 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|304315343|ref|YP_003850490.1| - 4.9e-08 32.7 1.9 2.6e-07 30.3 0.9 2.3 2 1 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|304315343|ref|YP_003850490.1| - 0.00028 20.4 0.0 0.0012 18.3 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|304315343|ref|YP_003850490.1| - 0.0084 15.1 2.0 0.02 13.9 2.0 1.9 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain DUF561 PF04481.12 gi|304315343|ref|YP_003850490.1| - 0.014 14.6 0.1 0.045 12.9 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF561) G3P_antiterm PF04309.12 gi|304315343|ref|YP_003850490.1| - 0.094 12.1 0.1 0.36 10.2 0.0 1.9 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.18 gi|304315343|ref|YP_003850490.1| - 0.25 10.3 2.2 0.45 9.5 2.3 1.4 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Nop PF01798.18 gi|304315344|ref|YP_003850491.1| - 1.8e-60 204.3 0.0 2.7e-60 203.7 0.0 1.3 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin TipAS PF07739.13 gi|304315344|ref|YP_003850491.1| - 0.065 13.8 0.0 0.54 10.8 0.0 2.2 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain Prefoldin_2 PF01920.20 gi|304315344|ref|YP_003850491.1| - 0.13 12.2 0.1 0.57 10.2 0.0 2.0 2 0 0 2 2 2 0 Prefoldin subunit Fibrillarin PF01269.17 gi|304315345|ref|YP_003850492.1| - 3.8e-91 304.2 0.0 4.1e-91 304.1 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Methyltransf_25 PF13649.6 gi|304315345|ref|YP_003850492.1| - 0.0031 18.2 0.0 0.0064 17.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain DFP PF04127.15 gi|304315346|ref|YP_003850493.1| - 3.1e-56 190.2 0.6 1e-54 185.2 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|304315346|ref|YP_003850493.1| - 1.3e-31 109.5 0.3 2.4e-31 108.6 0.3 1.5 1 0 0 1 1 1 1 Flavoprotein Usp PF00582.26 gi|304315346|ref|YP_003850493.1| - 0.019 15.5 0.8 0.56 10.7 0.0 3.2 3 1 1 4 4 4 0 Universal stress protein family YjeF_N PF03853.15 gi|304315346|ref|YP_003850493.1| - 0.057 13.3 0.1 18 5.2 0.0 3.0 3 0 0 3 3 3 0 YjeF-related protein N-terminus DUF4929 PF16283.5 gi|304315346|ref|YP_003850493.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4929) Pput2613-deam PF14427.6 gi|304315346|ref|YP_003850493.1| - 0.14 12.1 0.0 0.32 10.9 0.0 1.6 1 1 0 1 1 1 0 Pput_2613-like deaminase KH_5 PF13184.6 gi|304315347|ref|YP_003850494.1| - 5.8e-15 55.1 2.2 5.8e-15 55.1 2.2 2.2 2 0 0 2 2 2 1 NusA-like KH domain Ribosomal_S7e PF01251.18 gi|304315347|ref|YP_003850494.1| - 1.6e-05 24.7 0.3 6.5e-05 22.8 0.1 1.9 2 0 0 2 2 2 1 Ribosomal protein S7e KH_1 PF00013.29 gi|304315347|ref|YP_003850494.1| - 0.00015 21.6 2.6 0.00039 20.2 2.6 1.9 1 1 0 1 1 1 1 KH domain KH_4 PF13083.6 gi|304315347|ref|YP_003850494.1| - 0.00039 20.2 2.8 0.00082 19.2 1.2 2.2 2 0 0 2 2 2 1 KH domain KH_2 PF07650.17 gi|304315347|ref|YP_003850494.1| - 0.0086 15.9 5.1 0.0086 15.9 5.1 2.1 1 1 1 2 2 2 1 KH domain MdcE PF06833.11 gi|304315347|ref|YP_003850494.1| - 0.1 12.1 0.2 0.14 11.6 0.2 1.1 1 0 0 1 1 1 0 Malonate decarboxylase gamma subunit (MdcE) PsbP PF01789.16 gi|304315348|ref|YP_003850495.1| - 3.3e-05 24.1 0.4 0.0014 18.7 0.4 2.2 1 1 0 1 1 1 1 PsbP Phytochelatin PF05023.14 gi|304315348|ref|YP_003850495.1| - 0.054 12.7 0.1 1.4 8.0 0.0 2.0 1 1 1 2 2 2 0 Phytochelatin synthase LPAM_1 PF08139.12 gi|304315348|ref|YP_003850495.1| - 0.066 13.7 0.1 0.12 12.9 0.1 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DcrB PF08786.11 gi|304315348|ref|YP_003850495.1| - 0.17 12.0 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 DcrB GvpG PF05120.12 gi|304315349|ref|YP_003850496.1| - 0.0006 19.8 1.4 0.0013 18.7 1.4 1.5 1 0 0 1 1 1 1 Gas vesicle protein G DMAP_binding PF06464.11 gi|304315349|ref|YP_003850496.1| - 0.0026 18.5 7.9 0.005 17.6 7.9 1.4 1 0 0 1 1 1 1 DMAP1-binding Domain FtsH_ext PF06480.15 gi|304315349|ref|YP_003850496.1| - 0.018 15.4 3.4 0.02 15.3 1.7 1.8 2 0 0 2 2 2 0 FtsH Extracellular DUF2157 PF09925.9 gi|304315349|ref|YP_003850496.1| - 0.037 13.8 0.2 0.65 9.8 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) Bombinin PF05298.11 gi|304315349|ref|YP_003850496.1| - 0.058 13.1 0.8 0.08 12.6 0.8 1.2 1 0 0 1 1 1 0 Bombinin Auxin_canalis PF05703.11 gi|304315349|ref|YP_003850496.1| - 1.7 8.5 5.7 0.24 11.3 1.8 1.5 2 0 0 2 2 2 0 Auxin canalisation PDT PF00800.18 gi|304315350|ref|YP_003850497.1| - 5e-55 186.1 0.0 6.5e-55 185.8 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|304315350|ref|YP_003850497.1| - 1.2e-12 47.3 0.0 2.3e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 ACT domain Lig_C PF18330.1 gi|304315351|ref|YP_003850498.1| - 3.3e-41 140.2 0.0 6.3e-41 139.3 0.0 1.5 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|304315351|ref|YP_003850498.1| - 2.5e-15 57.1 0.0 4.3e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|304315351|ref|YP_003850498.1| - 0.001 18.8 0.0 0.12 12.0 0.0 2.5 2 1 0 2 2 2 1 ATP dependent DNA ligase domain CBS PF00571.28 gi|304315352|ref|YP_003850499.1| - 1.4e-53 179.2 13.5 2.8e-13 50.1 0.4 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|304315353|ref|YP_003850500.1| - 1.1e-53 179.5 15.7 2.9e-16 59.6 0.5 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|304315354|ref|YP_003850501.1| - 4.5e-59 196.7 13.8 1.7e-15 57.2 0.1 4.1 4 0 0 4 4 4 4 CBS domain L_protein_N PF15518.6 gi|304315354|ref|YP_003850501.1| - 0.079 12.8 0.0 0.21 11.4 0.0 1.8 1 1 0 1 1 1 0 L protein N-terminus Peptidase_M44 PF03410.13 gi|304315354|ref|YP_003850501.1| - 0.15 10.6 0.1 0.22 10.1 0.1 1.2 1 0 0 1 1 1 0 Metallopeptidase from vaccinia pox CBS PF00571.28 gi|304315355|ref|YP_003850502.1| - 4e-41 139.3 9.6 2.8e-13 50.1 0.0 4.4 4 1 0 4 4 4 4 CBS domain Peptidase_S55 PF05580.12 gi|304315355|ref|YP_003850502.1| - 0.17 11.8 0.1 0.42 10.5 0.0 1.6 2 0 0 2 2 2 0 SpoIVB peptidase S55 CBS PF00571.28 gi|304315356|ref|YP_003850503.1| - 7.3e-28 96.8 3.4 4.3e-13 49.5 0.2 2.2 2 0 0 2 2 2 2 CBS domain zf-RRN7 PF11781.8 gi|304315356|ref|YP_003850503.1| - 0.019 14.6 6.5 0.031 14.0 6.5 1.2 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 C1_2 PF03107.16 gi|304315356|ref|YP_003850503.1| - 0.036 14.4 1.3 0.058 13.7 1.3 1.2 1 0 0 1 1 1 0 C1 domain zf-HIT PF04438.16 gi|304315356|ref|YP_003850503.1| - 1.9 8.4 5.3 22 5.0 5.3 2.0 1 1 0 1 1 1 0 HIT zinc finger TF_Zn_Ribbon PF08271.12 gi|304315356|ref|YP_003850503.1| - 4.3 6.9 8.9 1 8.9 4.5 2.3 3 0 0 3 3 3 0 TFIIB zinc-binding Radical_SAM PF04055.21 gi|304315357|ref|YP_003850504.1| - 4.5e-15 56.4 0.0 6e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|304315357|ref|YP_003850504.1| - 4.7e-11 43.1 0.0 8.4e-11 42.3 0.0 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|304315357|ref|YP_003850504.1| - 7.8e-11 42.2 0.0 1.6e-10 41.1 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.19 gi|304315358|ref|YP_003850505.1| - 1.6e-27 95.9 0.0 1.9e-27 95.6 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF2218 PF09981.9 gi|304315358|ref|YP_003850505.1| - 0.075 13.4 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) DUF366 PF04017.12 gi|304315359|ref|YP_003850506.1| - 5.3e-65 218.3 0.1 5.9e-65 218.2 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) DUF296 PF03479.15 gi|304315360|ref|YP_003850507.1| - 2.3e-21 76.2 1.2 2.8e-21 75.9 1.2 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain NTP_transf_2 PF01909.23 gi|304315361|ref|YP_003850508.1| - 0.0059 16.9 0.0 0.013 15.8 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain NosD PF05048.13 gi|304315362|ref|YP_003850509.1| - 5e-48 163.5 59.2 1.9e-38 132.1 30.7 2.5 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|304315362|ref|YP_003850509.1| - 1.6e-26 93.0 65.6 7e-19 68.2 35.4 3.1 2 1 1 3 3 3 2 Right handed beta helix region Big_5 PF13205.6 gi|304315362|ref|YP_003850509.1| - 9.6e-24 84.2 13.2 3.2e-12 47.1 0.2 3.3 3 1 1 4 4 4 2 Bacterial Ig-like domain CopC PF04234.12 gi|304315362|ref|YP_003850509.1| - 0.012 16.7 0.0 7.4 7.7 0.0 2.8 2 0 0 2 2 2 0 CopC domain Big_5 PF13205.6 gi|304315363|ref|YP_003850510.1| - 7.5e-27 94.2 20.0 3.7e-14 53.3 1.5 4.1 1 1 3 4 4 4 2 Bacterial Ig-like domain NosD PF05048.13 gi|304315363|ref|YP_003850510.1| - 2.2e-13 50.0 20.0 2.2e-13 50.0 20.0 2.3 3 0 0 3 3 3 1 Periplasmic copper-binding protein (NosD) CopC PF04234.12 gi|304315363|ref|YP_003850510.1| - 1.2e-05 26.2 0.1 0.33 12.0 0.0 3.5 3 0 0 3 3 3 2 CopC domain Big_10 PF17964.1 gi|304315363|ref|YP_003850510.1| - 0.0054 16.7 1.6 0.88 9.5 0.1 2.5 1 1 1 2 2 2 2 Bacterial Ig domain bMG1 PF17970.1 gi|304315363|ref|YP_003850510.1| - 0.021 14.9 0.0 0.34 11.0 0.0 2.8 3 0 0 3 3 3 0 Bacterial Alpha-2-macroglobulin MG1 domain DUF4580 PF15162.6 gi|304315363|ref|YP_003850510.1| - 0.042 13.4 0.1 0.63 9.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4580) CBM60 PF16841.5 gi|304315363|ref|YP_003850510.1| - 0.097 13.1 1.9 0.76 10.2 0.4 3.1 3 0 0 3 3 3 0 Ca-dependent carbohydrate-binding module xylan-binding PBSX_XtrA PF17356.2 gi|304315363|ref|YP_003850510.1| - 0.18 11.7 6.5 1.7 8.6 0.0 4.0 4 0 0 4 4 4 0 Phage-like element PBSX protein XtrA Beta_helix PF13229.6 gi|304315364|ref|YP_003850511.1| - 4.9e-09 36.2 17.6 6e-09 35.9 16.7 1.6 1 1 0 1 1 1 1 Right handed beta helix region NosD PF05048.13 gi|304315364|ref|YP_003850511.1| - 2.8e-08 33.3 7.5 3.1e-08 33.2 7.5 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Homoserine_dh PF00742.19 gi|304315365|ref|YP_003850512.1| - 9.7e-61 204.7 0.0 2e-60 203.7 0.0 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|304315365|ref|YP_003850512.1| - 8.2e-22 78.1 0.0 1.3e-21 77.4 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ACT PF01842.25 gi|304315365|ref|YP_003850512.1| - 2.8e-14 52.6 0.1 6.4e-14 51.4 0.1 1.7 1 0 0 1 1 1 1 ACT domain GFO_IDH_MocA PF01408.22 gi|304315365|ref|YP_003850512.1| - 0.0014 19.5 0.0 0.003 18.4 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|304315365|ref|YP_003850512.1| - 0.012 15.8 0.0 0.026 14.8 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ACT_4 PF13291.6 gi|304315365|ref|YP_003850512.1| - 0.014 16.0 0.0 0.037 14.6 0.0 1.7 1 0 0 1 1 1 0 ACT domain AP_endonuc_2 PF01261.24 gi|304315365|ref|YP_003850512.1| - 0.032 13.7 0.1 0.078 12.4 0.1 1.8 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Cas_Cas4 PF01930.17 gi|304315366|ref|YP_003850513.1| - 1.9e-08 34.6 0.0 1.3e-06 28.6 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|304315366|ref|YP_003850513.1| - 0.0023 17.9 0.0 0.082 12.8 0.0 2.3 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF5612 PF18462.1 gi|304315368|ref|YP_003850515.1| - 1.3e-74 248.8 8.2 1.7e-74 248.4 8.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|304315368|ref|YP_003850515.1| - 1e-11 44.4 0.5 7.1e-11 41.7 0.0 2.6 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.6 gi|304315368|ref|YP_003850515.1| - 4.4e-09 36.8 1.6 2.2e-08 34.6 0.1 2.2 2 0 0 2 2 2 1 ACT domain StbA PF06406.11 gi|304315368|ref|YP_003850515.1| - 0.012 14.9 0.3 0.012 14.9 0.3 1.6 2 0 0 2 2 2 0 StbA protein ACT_7 PF13840.6 gi|304315368|ref|YP_003850515.1| - 0.13 12.1 1.5 0.64 9.9 0.0 2.6 3 0 0 3 3 3 0 ACT domain Ehbp PF10622.9 gi|304315369|ref|YP_003850516.1| - 5e-41 138.6 0.5 5.5e-41 138.5 0.5 1.0 1 0 0 1 1 1 1 Energy-converting hydrogenase B subunit P (EhbP) Ig_GlcNase PF18368.1 gi|304315369|ref|YP_003850516.1| - 0.0022 18.1 0.0 0.0027 17.8 0.0 1.2 1 0 0 1 1 1 1 Exo-beta-D-glucosaminidase Ig-fold domain C2 PF00168.30 gi|304315369|ref|YP_003850516.1| - 0.14 12.4 0.0 0.17 12.2 0.0 1.1 1 0 0 1 1 1 0 C2 domain NADHdh PF00146.21 gi|304315370|ref|YP_003850517.1| - 2e-22 79.9 26.2 2.7e-21 76.2 26.2 1.9 1 1 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|304315371|ref|YP_003850518.1| - 4.3e-46 157.2 0.4 1.1e-38 133.0 0.1 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|304315371|ref|YP_003850518.1| - 4.4e-19 68.8 0.3 2.5e-14 53.1 0.0 3.0 3 1 1 4 4 4 2 Nickel-dependent hydrogenase Oxidored_q6 PF01058.22 gi|304315372|ref|YP_003850519.1| - 5.7e-26 90.9 1.1 7e-26 90.6 1.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4_7 PF12838.7 gi|304315373|ref|YP_003850520.1| - 2.1e-11 44.2 4.0 3.4e-11 43.6 4.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304315373|ref|YP_003850520.1| - 1.1e-10 41.4 2.5 0.00023 21.2 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|304315373|ref|YP_003850520.1| - 1.3e-10 40.6 11.9 5.4e-05 22.8 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304315373|ref|YP_003850520.1| - 4.4e-09 36.3 6.3 0.00017 21.6 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304315373|ref|YP_003850520.1| - 8.9e-08 32.5 0.4 0.011 16.2 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304315373|ref|YP_003850520.1| - 1.1e-07 31.9 6.5 2.9e-07 30.5 6.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304315373|ref|YP_003850520.1| - 2e-07 30.8 11.3 0.00095 19.1 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|304315373|ref|YP_003850520.1| - 6.4e-07 29.8 2.1 0.025 15.1 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304315373|ref|YP_003850520.1| - 1.9e-06 27.9 11.1 0.00032 21.0 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304315373|ref|YP_003850520.1| - 6.2e-06 27.1 8.0 0.00033 21.5 9.7 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|304315373|ref|YP_003850520.1| - 1.4e-05 24.9 13.5 0.0018 18.3 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|304315373|ref|YP_003850520.1| - 0.0001 23.0 1.5 0.018 15.9 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304315373|ref|YP_003850520.1| - 0.021 15.3 8.3 0.99 10.0 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|304315373|ref|YP_003850520.1| - 0.033 15.1 18.4 0.19 12.7 6.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|304315373|ref|YP_003850520.1| - 0.08 13.1 7.9 0.27 11.5 0.7 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|304315373|ref|YP_003850520.1| - 1 9.6 5.8 1 9.5 2.9 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4 PF00037.27 gi|304315374|ref|YP_003850521.1| - 3.4e-72 235.6 144.5 3.4e-08 33.0 2.3 14.8 14 1 0 14 14 14 13 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304315374|ref|YP_003850521.1| - 4e-50 168.2 112.4 1.1e-09 38.7 7.9 9.9 5 3 4 10 10 10 10 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304315374|ref|YP_003850521.1| - 3.3e-48 159.9 145.0 3e-06 27.1 2.6 14.2 14 0 0 14 14 14 14 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304315374|ref|YP_003850521.1| - 1.3e-41 141.3 99.3 0.00019 22.3 1.2 14.0 13 1 1 14 14 14 14 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|304315374|ref|YP_003850521.1| - 3.3e-40 136.0 118.0 8.6e-09 35.4 8.5 9.2 5 3 5 10 10 10 10 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304315374|ref|YP_003850521.1| - 3.1e-38 129.7 112.7 8.9e-10 38.6 10.6 10.0 7 3 2 10 10 10 10 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|304315374|ref|YP_003850521.1| - 8.7e-38 126.1 135.5 6.2e-06 26.0 1.5 14.2 14 0 0 14 14 14 12 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304315374|ref|YP_003850521.1| - 4e-37 126.1 129.5 2e-06 27.8 11.3 11.3 3 3 9 13 13 13 13 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304315374|ref|YP_003850521.1| - 2.8e-23 80.5 138.2 0.0016 18.8 2.2 14.2 14 0 0 14 14 14 13 4Fe-4S binding domain Fer4_8 PF13183.6 gi|304315374|ref|YP_003850521.1| - 2.4e-20 72.7 118.6 2.3e-07 31.2 3.0 12.6 7 3 6 14 14 13 10 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304315374|ref|YP_003850521.1| - 7.5e-18 64.8 123.3 7e-07 29.7 3.5 12.8 5 4 7 13 13 13 11 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|304315374|ref|YP_003850521.1| - 4.6e-14 52.2 157.3 0.0022 18.8 2.5 14.2 14 0 0 14 14 14 10 4Fe-4S binding domain Fer4_11 PF13247.6 gi|304315374|ref|YP_003850521.1| - 1.9e-09 37.5 69.0 0.0004 20.4 0.9 7.3 4 3 3 7 7 7 5 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|304315374|ref|YP_003850521.1| - 4.9e-07 29.9 116.2 0.00099 19.3 6.1 9.2 2 2 7 9 9 9 6 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|304315374|ref|YP_003850521.1| - 0.0011 19.5 130.8 0.0023 18.4 2.0 14.0 14 0 0 14 14 13 7 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|304315374|ref|YP_003850521.1| - 0.026 15.3 1.5 0.026 15.3 1.5 14.4 8 7 3 12 12 10 0 4Fe-4S single cluster domain DUF1275 PF06912.11 gi|304315375|ref|YP_003850522.1| - 0.012 15.6 1.0 0.014 15.3 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) MnhB PF04039.13 gi|304315376|ref|YP_003850523.1| - 7.3e-23 81.2 13.7 8.8e-23 81.0 13.7 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter GPI2 PF06432.11 gi|304315378|ref|YP_003850525.1| - 0.012 15.0 0.8 0.014 14.9 0.8 1.1 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF1673 PF07895.11 gi|304315378|ref|YP_003850525.1| - 0.035 13.8 0.9 0.039 13.7 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) Proton_antipo_M PF00361.20 gi|304315379|ref|YP_003850526.1| - 6.7e-30 104.3 26.6 6.7e-30 104.3 26.6 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|304315379|ref|YP_003850526.1| - 7.2e-07 28.8 8.8 7.2e-07 28.8 8.8 2.0 1 1 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.24 gi|304315380|ref|YP_003850527.1| - 3.5e-26 90.9 6.1 3.9e-26 90.7 6.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|304315380|ref|YP_003850527.1| - 7.8e-07 29.0 1.8 7.8e-07 29.0 1.8 2.1 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) DUF4040 PF13244.6 gi|304315381|ref|YP_003850528.1| - 3.5e-17 62.3 11.0 4.2e-17 62.1 11.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) 7TM-7TMR_HD PF07698.11 gi|304315381|ref|YP_003850528.1| - 0.024 14.4 6.2 0.027 14.2 6.2 1.0 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase B12D PF06522.11 gi|304315381|ref|YP_003850528.1| - 0.044 13.6 3.6 0.2 11.4 0.1 2.7 3 0 0 3 3 3 0 NADH-ubiquinone reductase complex 1 MLRQ subunit DUF2109 PF09882.9 gi|304315381|ref|YP_003850528.1| - 0.11 12.5 6.7 0.13 12.3 5.9 1.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2109) ABC2_membrane_2 PF12679.7 gi|304315381|ref|YP_003850528.1| - 0.42 9.8 5.8 0.68 9.2 5.8 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2070 PF09843.9 gi|304315381|ref|YP_003850528.1| - 0.86 7.8 4.1 0.86 7.8 4.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4044 PF13253.6 gi|304315381|ref|YP_003850528.1| - 1.1 8.9 6.8 1.3 8.6 3.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4044) PhaG_MnhG_YufB PF03334.14 gi|304315382|ref|YP_003850529.1| - 1.1e-06 28.8 9.2 1.1e-05 25.6 9.2 2.3 1 1 0 1 1 1 1 Na+/H+ antiporter subunit DUF2109 PF09882.9 gi|304315382|ref|YP_003850529.1| - 2.8e-05 24.0 3.7 4e-05 23.5 3.7 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2109) MrpF_PhaF PF04066.13 gi|304315383|ref|YP_003850530.1| - 1e-08 35.5 5.6 1e-08 35.5 5.6 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PSI_PsaJ PF01701.18 gi|304315383|ref|YP_003850530.1| - 0.34 11.5 3.3 0.5 10.9 0.3 2.3 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ MNHE PF01899.16 gi|304315384|ref|YP_003850531.1| - 9.2e-23 80.6 0.2 9.7e-23 80.5 0.2 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit YdjM PF04307.14 gi|304315385|ref|YP_003850532.1| - 2e-19 69.5 6.5 8.1e-19 67.6 6.5 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4184 PF13803.6 gi|304315385|ref|YP_003850532.1| - 0.076 12.7 14.9 14 5.3 14.5 3.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) DUF4501 PF14946.6 gi|304315385|ref|YP_003850532.1| - 3.8 7.6 5.4 9.1 6.3 0.8 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4501) AstE_AspA PF04952.14 gi|304315386|ref|YP_003850533.1| - 7.4e-15 54.8 0.0 2.6e-14 53.0 0.0 1.7 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.24 gi|304315386|ref|YP_003850533.1| - 0.0027 17.6 0.0 0.0061 16.4 0.0 1.5 2 0 0 2 2 2 1 Zinc carboxypeptidase aGPT-Pplase1 PF18723.1 gi|304315386|ref|YP_003850533.1| - 0.16 11.4 0.0 0.23 10.8 0.0 1.1 1 0 0 1 1 1 0 alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 1 Arginosuc_synth PF00764.19 gi|304315387|ref|YP_003850534.1| - 1.9e-178 593.7 0.0 2.2e-178 593.5 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|304315387|ref|YP_003850534.1| - 5.9e-05 22.7 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|304315387|ref|YP_003850534.1| - 0.0038 16.9 0.0 0.0057 16.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|304315387|ref|YP_003850534.1| - 0.017 13.9 0.0 0.029 13.2 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase NAD_synthase PF02540.17 gi|304315387|ref|YP_003850534.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 NAD synthase BofA PF07441.11 gi|304315388|ref|YP_003850535.1| - 4.9e-08 33.1 22.4 1e-07 32.1 22.4 1.6 1 1 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Carb_kinase PF01256.17 gi|304315389|ref|YP_003850536.1| - 1.1e-47 162.6 0.1 1.4e-47 162.2 0.1 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|304315389|ref|YP_003850536.1| - 1.4e-42 145.5 1.9 6.5e-42 143.3 0.0 2.3 2 1 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|304315389|ref|YP_003850536.1| - 0.0027 17.1 0.0 0.11 11.8 0.1 2.1 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family 3H PF02829.14 gi|304315390|ref|YP_003850537.1| - 6.3e-72 238.0 3.1 2.7e-25 88.5 0.0 3.7 3 0 0 3 3 3 3 3H domain TrkA_N PF02254.18 gi|304315390|ref|YP_003850537.1| - 3.2e-33 114.4 0.2 5.4e-32 110.5 0.0 2.8 3 0 0 3 3 3 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|304315390|ref|YP_003850537.1| - 5.5e-13 48.7 13.7 9.1e-13 48.0 13.7 1.3 1 0 0 1 1 1 1 Ion channel Sacchrp_dh_NADP PF03435.18 gi|304315390|ref|YP_003850537.1| - 0.0014 18.9 0.0 0.0064 16.8 0.0 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Ion_trans PF00520.31 gi|304315390|ref|YP_003850537.1| - 0.012 14.8 8.4 0.026 13.7 7.7 1.9 2 1 0 2 2 2 0 Ion transport protein NAD_binding_7 PF13241.6 gi|304315390|ref|YP_003850537.1| - 0.02 15.3 0.4 0.11 12.9 0.0 2.4 2 1 1 3 3 3 0 Putative NAD(P)-binding Nif11 PF07862.11 gi|304315390|ref|YP_003850537.1| - 0.045 14.1 0.0 3.9 7.9 0.0 2.7 2 0 0 2 2 2 0 Nif11 domain NAD_binding_10 PF13460.6 gi|304315390|ref|YP_003850537.1| - 0.068 13.1 0.0 0.47 10.3 0.0 2.0 2 0 0 2 2 2 0 NAD(P)H-binding F420_oxidored PF03807.17 gi|304315390|ref|YP_003850537.1| - 0.13 12.9 0.0 11 6.7 0.0 2.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent FTR_C PF02741.15 gi|304315391|ref|YP_003850538.1| - 1.5e-67 226.3 3.3 1.5e-67 226.3 3.3 1.6 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.18 gi|304315391|ref|YP_003850538.1| - 6.3e-63 211.0 0.1 1.6e-62 209.6 0.0 1.7 3 0 0 3 3 3 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase GPAT_N PF14829.6 gi|304315391|ref|YP_003850538.1| - 0.13 12.3 0.1 0.23 11.5 0.1 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase N-terminal Ribosomal_L23 PF00276.20 gi|304315391|ref|YP_003850538.1| - 0.14 12.5 0.7 2.5 8.5 0.0 2.3 2 1 0 2 2 2 0 Ribosomal protein L23 HisKA_2 PF07568.12 gi|304315392|ref|YP_003850539.1| - 3.6e-12 46.2 0.1 2.1e-11 43.7 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase PAS_4 PF08448.10 gi|304315392|ref|YP_003850539.1| - 7.9e-12 45.4 0.0 3.2e-11 43.4 0.0 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|304315392|ref|YP_003850539.1| - 2.3e-09 37.7 0.0 5.9e-09 36.4 0.0 1.6 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|304315392|ref|YP_003850539.1| - 8.5e-08 32.4 0.0 1.3e-06 28.6 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|304315392|ref|YP_003850539.1| - 8.8e-06 25.7 0.0 1.9e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|304315392|ref|YP_003850539.1| - 0.0023 17.9 0.0 0.0051 16.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold CheX PF13690.6 gi|304315392|ref|YP_003850539.1| - 0.042 14.0 0.0 0.083 13.1 0.0 1.4 1 0 0 1 1 1 0 Chemotaxis phosphatase CheX PA28_beta PF02252.18 gi|304315392|ref|YP_003850539.1| - 0.052 13.2 0.0 0.092 12.4 0.0 1.4 1 0 0 1 1 1 0 Proteasome activator pa28 beta subunit PAS_3 PF08447.12 gi|304315392|ref|YP_003850539.1| - 0.16 12.2 0.0 1.4 9.3 0.0 2.3 2 0 0 2 2 2 0 PAS fold LPG_synthase_TM PF03706.13 gi|304315393|ref|YP_003850540.1| - 1.2e-52 179.4 34.3 1.4e-52 179.1 34.3 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region PrgI PF12666.7 gi|304315393|ref|YP_003850540.1| - 0.045 14.4 1.6 0.045 14.4 1.6 3.7 3 1 0 3 3 3 0 PrgI family protein DUF3967 PF13152.6 gi|304315393|ref|YP_003850540.1| - 0.16 11.8 1.2 0.29 10.9 1.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3967) NhaB PF06450.12 gi|304315393|ref|YP_003850540.1| - 0.17 10.7 17.9 0.0093 14.9 5.5 2.3 2 0 0 2 2 2 0 Bacterial Na+/H+ antiporter B (NhaB) Pex24p PF06398.11 gi|304315393|ref|YP_003850540.1| - 4.7 6.1 5.8 8.4 5.3 5.6 1.4 1 1 0 1 1 1 0 Integral peroxisomal membrane peroxin Metallophos_2 PF12850.7 gi|304315394|ref|YP_003850541.1| - 9e-28 97.5 0.1 1.1e-27 97.2 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|304315394|ref|YP_003850541.1| - 3.1e-07 31.1 2.9 2.7e-06 28.0 0.3 2.1 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|304315394|ref|YP_003850541.1| - 0.0056 16.0 0.3 0.46 9.8 0.0 2.1 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily TRAM PF01938.20 gi|304315395|ref|YP_003850542.1| - 2.7e-18 65.7 1.9 3.1e-18 65.5 1.9 1.1 1 0 0 1 1 1 1 TRAM domain TrkH PF02386.16 gi|304315396|ref|YP_003850543.1| - 1.4e-56 192.0 21.4 2.1e-52 178.2 21.4 2.1 1 1 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|304315397|ref|YP_003850544.1| - 1e-33 116.0 1.2 2.1e-33 115.0 1.2 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|304315397|ref|YP_003850544.1| - 3.5e-12 46.0 0.5 2e-11 43.5 0.1 2.4 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|304315397|ref|YP_003850544.1| - 3.8e-07 30.5 0.8 7.4e-07 29.6 0.1 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|304315397|ref|YP_003850544.1| - 8.5e-05 22.7 0.8 0.00052 20.1 0.3 2.2 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox PF00070.27 gi|304315397|ref|YP_003850544.1| - 0.00025 21.5 0.3 0.0007 20.1 0.3 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|304315397|ref|YP_003850544.1| - 0.00053 19.3 0.1 0.00085 18.7 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|304315397|ref|YP_003850544.1| - 0.0023 18.1 0.0 0.0056 16.9 0.1 1.6 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|304315397|ref|YP_003850544.1| - 0.0031 17.2 0.1 0.0058 16.3 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DUF2099 PF09872.9 gi|304315397|ref|YP_003850544.1| - 0.0094 15.2 0.1 0.018 14.3 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) ADH_zinc_N PF00107.26 gi|304315397|ref|YP_003850544.1| - 0.015 15.3 0.0 0.039 13.9 0.0 1.7 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Pyr_redox_2 PF07992.14 gi|304315397|ref|YP_003850544.1| - 0.019 14.2 0.1 0.028 13.7 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|304315397|ref|YP_003850544.1| - 0.021 14.7 0.1 0.033 14.1 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|304315397|ref|YP_003850544.1| - 0.021 14.8 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.24 gi|304315397|ref|YP_003850544.1| - 0.022 14.4 0.1 0.049 13.2 0.1 1.6 1 1 0 1 1 1 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|304315397|ref|YP_003850544.1| - 0.032 13.8 0.5 0.17 11.4 0.2 2.1 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.6 gi|304315397|ref|YP_003850544.1| - 0.033 14.7 0.0 0.045 14.3 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain F420_oxidored PF03807.17 gi|304315397|ref|YP_003850544.1| - 0.035 14.7 1.1 0.098 13.2 0.2 2.2 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Lactamase_B PF00753.27 gi|304315399|ref|YP_003850546.1| - 5e-23 82.1 1.4 7.7e-23 81.5 1.4 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|304315399|ref|YP_003850546.1| - 0.0026 17.3 0.1 0.0033 17.0 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Hjc PF01870.18 gi|304315400|ref|YP_003850547.1| - 6.5e-34 115.8 0.0 8.2e-34 115.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) zf-ribbon_3 PF13248.6 gi|304315402|ref|YP_003850549.1| - 1.6e-08 33.7 0.8 2.2e-08 33.2 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|304315402|ref|YP_003850549.1| - 1e-07 31.4 3.3 1.4e-07 31.0 3.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|304315402|ref|YP_003850549.1| - 2.7e-06 27.3 0.4 3.6e-06 26.9 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon TctB PF07331.11 gi|304315402|ref|YP_003850549.1| - 4.1e-05 23.9 0.7 4.3e-05 23.8 0.7 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family TF_Zn_Ribbon PF08271.12 gi|304315402|ref|YP_003850549.1| - 0.00045 19.7 1.0 0.00094 18.7 1.0 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|304315402|ref|YP_003850549.1| - 0.0018 18.1 1.9 0.29 11.1 0.1 2.4 2 0 0 2 2 2 2 Nudix N-terminal RNA_POL_M_15KD PF02150.16 gi|304315402|ref|YP_003850549.1| - 0.021 14.7 1.4 0.46 10.4 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-tcix PF14952.6 gi|304315402|ref|YP_003850549.1| - 0.1 12.2 3.2 0.18 11.5 3.2 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding zf-RRN7 PF11781.8 gi|304315402|ref|YP_003850549.1| - 0.11 12.3 4.0 0.7 9.6 3.3 2.1 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF2207 PF09972.9 gi|304315402|ref|YP_003850549.1| - 0.12 11.1 0.3 0.14 10.9 0.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) zinc_ribbon_15 PF17032.5 gi|304315402|ref|YP_003850549.1| - 0.6 10.9 3.4 0.93 10.3 3.4 1.3 1 0 0 1 1 1 0 zinc-ribbon family RecR PF02132.15 gi|304315402|ref|YP_003850549.1| - 0.84 9.3 3.3 0.96 9.1 0.1 2.3 1 1 1 2 2 2 0 RecR protein DHHC PF01529.20 gi|304315402|ref|YP_003850549.1| - 6 7.0 7.8 3 7.9 0.3 2.3 2 1 1 3 3 3 0 DHHC palmitoyltransferase DUF2116 PF09889.9 gi|304315402|ref|YP_003850549.1| - 7.6 6.6 8.2 59 3.7 0.0 3.4 3 1 1 4 4 4 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Radical_SAM PF04055.21 gi|304315403|ref|YP_003850550.1| - 6.6e-12 46.1 0.0 1.2e-11 45.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily BATS PF06968.13 gi|304315403|ref|YP_003850550.1| - 0.025 14.7 0.0 0.052 13.7 0.0 1.6 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain XTBD PF11952.8 gi|304315403|ref|YP_003850550.1| - 0.037 13.8 0.0 8.6 6.2 0.0 2.3 2 0 0 2 2 2 0 XRN-Two Binding Domain, XTBD GatB_N PF02934.15 gi|304315404|ref|YP_003850551.1| - 1.9e-88 296.5 0.0 2.5e-88 296.0 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|304315404|ref|YP_003850551.1| - 5.7e-42 143.1 1.0 8.6e-42 142.5 1.0 1.3 1 0 0 1 1 1 1 GatB domain DUF5343 PF17278.2 gi|304315404|ref|YP_003850551.1| - 0.047 13.8 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5343) MJ1316 PF04457.12 gi|304315405|ref|YP_003850552.1| - 4.4e-13 49.8 0.1 4.8e-13 49.6 0.1 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain CBS PF00571.28 gi|304315406|ref|YP_003850553.1| - 2e-28 98.6 5.8 9.5e-15 54.8 1.1 2.6 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|304315406|ref|YP_003850553.1| - 6.4e-15 55.2 0.0 1.6e-14 53.9 0.0 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|304315406|ref|YP_003850553.1| - 0.00024 21.2 0.1 0.0015 18.6 0.1 2.0 1 1 0 1 1 1 1 Putative ParB-like nuclease Ubiquitin_2 PF14560.6 gi|304315406|ref|YP_003850553.1| - 0.079 13.4 0.1 0.29 11.6 0.0 2.0 2 0 0 2 2 2 0 Ubiquitin-like domain PRA-PH PF01503.17 gi|304315407|ref|YP_003850554.1| - 1.6e-15 57.3 0.6 1.9e-15 57.0 0.6 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|304315407|ref|YP_003850554.1| - 0.007 16.5 0.7 0.01 16.0 0.7 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain Acetyltransf_1 PF00583.25 gi|304315408|ref|YP_003850555.1| - 1.7e-16 60.5 0.0 2.2e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|304315408|ref|YP_003850555.1| - 5.1e-11 42.6 0.0 8.6e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|304315408|ref|YP_003850555.1| - 2.2e-10 40.8 0.0 4.4e-10 39.8 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|304315408|ref|YP_003850555.1| - 1.1e-07 31.7 0.0 2.1e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|304315408|ref|YP_003850555.1| - 0.0014 18.3 0.0 0.0019 17.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|304315408|ref|YP_003850555.1| - 0.015 16.0 0.0 0.022 15.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|304315408|ref|YP_003850555.1| - 0.016 15.3 0.0 0.042 14.0 0.0 1.8 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|304315408|ref|YP_003850555.1| - 0.027 14.6 0.0 0.13 12.3 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|304315408|ref|YP_003850555.1| - 0.084 13.0 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HxlR PF01638.17 gi|304315409|ref|YP_003850556.1| - 3.6e-39 132.5 0.1 4.1e-39 132.3 0.1 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|304315409|ref|YP_003850556.1| - 0.0029 17.5 0.1 0.0038 17.1 0.1 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|304315409|ref|YP_003850556.1| - 0.0046 16.9 0.0 0.0081 16.1 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|304315409|ref|YP_003850556.1| - 0.0052 16.8 0.0 0.0064 16.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_12 PF08461.10 gi|304315409|ref|YP_003850556.1| - 0.033 14.1 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Replic_Relax PF13814.6 gi|304315409|ref|YP_003850556.1| - 0.1 12.7 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF505 PF04458.12 gi|304315409|ref|YP_003850556.1| - 0.14 10.5 0.0 0.15 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) AIRC PF00731.20 gi|304315410|ref|YP_003850557.1| - 2.5e-20 72.6 2.5 3.6e-20 72.1 2.5 1.2 1 0 0 1 1 1 1 AIR carboxylase Sua5_yciO_yrdC PF01300.18 gi|304315411|ref|YP_003850558.1| - 1.9e-46 157.9 0.0 3.7e-46 156.9 0.0 1.5 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|304315411|ref|YP_003850558.1| - 3.7e-28 97.0 15.6 2.5e-14 52.8 3.0 2.6 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|304315411|ref|YP_003850558.1| - 7.1e-26 90.9 0.1 1.3e-25 90.0 0.1 1.5 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|304315411|ref|YP_003850558.1| - 1.6e-23 82.9 0.0 4.1e-23 81.6 0.0 1.7 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|304315411|ref|YP_003850558.1| - 0.00017 21.4 0.1 0.032 13.9 0.0 2.2 2 0 0 2 2 2 2 Glycoprotease family BcrAD_BadFG PF01869.20 gi|304315411|ref|YP_003850558.1| - 0.0033 17.0 0.1 0.0064 16.0 0.1 1.5 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Zn-ribbon_8 PF09723.10 gi|304315411|ref|YP_003850558.1| - 8.9 6.5 11.1 2e+02 2.2 7.0 2.9 2 1 0 2 2 2 0 Zinc ribbon domain HTH_5 PF01022.20 gi|304315412|ref|YP_003850559.1| - 9.6e-16 57.4 0.0 7.3e-15 54.6 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|304315412|ref|YP_003850559.1| - 2.3e-08 33.9 0.3 6.1e-08 32.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain PadR PF03551.14 gi|304315412|ref|YP_003850559.1| - 6.2e-05 22.9 0.0 0.00079 19.3 0.0 2.3 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|304315412|ref|YP_003850559.1| - 0.00016 21.1 1.3 0.0016 18.0 1.3 2.4 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|304315412|ref|YP_003850559.1| - 0.0016 18.3 0.0 0.0042 16.9 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|304315412|ref|YP_003850559.1| - 0.015 15.1 0.9 0.18 11.6 0.0 2.6 3 0 0 3 3 3 0 HTH DNA binding domain DUF3781 PF12636.7 gi|304315412|ref|YP_003850559.1| - 0.021 14.7 0.1 0.039 13.8 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3781) HTH_27 PF13463.6 gi|304315412|ref|YP_003850559.1| - 0.023 15.2 0.0 0.053 14.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|304315412|ref|YP_003850559.1| - 0.035 14.0 0.2 0.035 14.0 0.2 2.3 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|304315412|ref|YP_003850559.1| - 0.049 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_CodY PF08222.11 gi|304315412|ref|YP_003850559.1| - 0.052 13.1 0.4 0.26 10.9 0.1 2.0 1 1 1 2 2 2 0 CodY helix-turn-helix domain IF2_N PF04760.15 gi|304315412|ref|YP_003850559.1| - 0.056 13.3 0.8 0.14 12.0 0.2 1.9 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region GrpE PF01025.19 gi|304315413|ref|YP_003850560.1| - 4.2e-41 140.4 6.6 5.2e-41 140.1 6.6 1.1 1 0 0 1 1 1 1 GrpE Spc7 PF08317.11 gi|304315413|ref|YP_003850560.1| - 0.0013 17.7 9.2 0.0017 17.3 9.2 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF148 PF02520.17 gi|304315413|ref|YP_003850560.1| - 0.0097 16.0 6.1 0.03 14.4 5.8 1.8 1 1 1 2 2 2 1 Domain of unknown function DUF148 DUF4763 PF15960.5 gi|304315413|ref|YP_003850560.1| - 0.013 14.8 7.0 0.019 14.3 7.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) DUF812 PF05667.11 gi|304315413|ref|YP_003850560.1| - 0.014 14.4 9.6 0.018 14.0 9.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF3450 PF11932.8 gi|304315413|ref|YP_003850560.1| - 0.014 14.7 2.9 0.018 14.3 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) CASP_C PF08172.12 gi|304315413|ref|YP_003850560.1| - 0.028 13.8 1.6 0.028 13.8 1.6 1.9 1 1 1 2 2 2 0 CASP C terminal DUF4449 PF14613.6 gi|304315413|ref|YP_003850560.1| - 0.035 14.2 4.9 0.71 10.0 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4449) YfiO PF13525.6 gi|304315413|ref|YP_003850560.1| - 0.044 13.5 0.3 0.063 13.0 0.3 1.1 1 0 0 1 1 1 0 Outer membrane lipoprotein UPF0242 PF06785.11 gi|304315413|ref|YP_003850560.1| - 0.049 13.7 13.3 0.067 13.3 13.3 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Exonuc_VII_L PF02601.15 gi|304315413|ref|YP_003850560.1| - 0.057 13.0 1.0 0.054 13.0 1.0 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit LPD11 PF18824.1 gi|304315413|ref|YP_003850560.1| - 0.091 12.8 3.5 0.21 11.7 0.7 2.4 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 11 Surfac_D-trimer PF09006.11 gi|304315413|ref|YP_003850560.1| - 0.12 12.3 0.4 0.4 10.6 0.2 1.9 1 1 1 2 2 2 0 Lung surfactant protein D coiled-coil trimerisation ESM4 PF15952.5 gi|304315413|ref|YP_003850560.1| - 0.14 12.6 4.1 0.16 12.4 4.1 1.1 1 0 0 1 1 1 0 Enhancer of split M4 family MPS2 PF17060.5 gi|304315413|ref|YP_003850560.1| - 0.16 11.2 7.2 0.21 10.8 7.2 1.3 1 0 0 1 1 1 0 Monopolar spindle protein 2 Cep57_MT_bd PF06657.13 gi|304315413|ref|YP_003850560.1| - 0.2 12.1 7.7 0.64 10.5 6.1 2.2 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 PKcGMP_CC PF16808.5 gi|304315413|ref|YP_003850560.1| - 0.21 11.5 13.9 0.076 12.9 6.5 3.3 2 1 1 3 3 3 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF16 PF01519.16 gi|304315413|ref|YP_003850560.1| - 0.22 12.0 5.8 0.36 11.4 5.8 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF16 TMPIT PF07851.13 gi|304315413|ref|YP_003850560.1| - 0.3 10.3 5.6 0.41 9.9 5.6 1.1 1 0 0 1 1 1 0 TMPIT-like protein APG6_N PF17675.1 gi|304315413|ref|YP_003850560.1| - 0.31 11.6 18.2 0.25 11.9 16.5 1.6 1 1 0 1 1 1 0 Apg6 coiled-coil region Atg14 PF10186.9 gi|304315413|ref|YP_003850560.1| - 0.47 9.5 5.8 0.57 9.2 5.8 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 PIN_12 PF16289.5 gi|304315413|ref|YP_003850560.1| - 0.64 10.5 8.1 1.3 9.5 8.1 1.7 1 1 0 1 1 1 0 PIN domain DUF724 PF05266.14 gi|304315413|ref|YP_003850560.1| - 0.7 9.7 9.6 1.2 8.9 9.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF724) DUF2229 PF09989.9 gi|304315413|ref|YP_003850560.1| - 0.73 9.4 6.4 13 5.4 6.4 2.0 1 1 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) OmpH PF03938.14 gi|304315413|ref|YP_003850560.1| - 0.74 10.1 12.6 1.2 9.5 12.3 1.5 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) FAM76 PF16046.5 gi|304315413|ref|YP_003850560.1| - 0.78 9.0 8.0 1.1 8.6 8.0 1.2 1 0 0 1 1 1 0 FAM76 protein Tho2 PF11262.8 gi|304315413|ref|YP_003850560.1| - 0.89 8.7 6.3 1.2 8.3 6.3 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 FapA PF03961.13 gi|304315413|ref|YP_003850560.1| - 1.2 7.7 8.7 1.5 7.3 8.7 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF2408 PF10303.9 gi|304315413|ref|YP_003850560.1| - 1.7 9.2 11.7 4.9 7.7 11.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DUF4404 PF14357.6 gi|304315413|ref|YP_003850560.1| - 1.9 9.1 8.5 3.7 8.3 5.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) CorA PF01544.18 gi|304315413|ref|YP_003850560.1| - 2.2 7.5 6.1 3.5 6.9 6.1 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Ead_Ea22 PF13935.6 gi|304315413|ref|YP_003850560.1| - 9.6 6.9 10.4 5.8 7.6 3.2 2.2 1 1 1 2 2 2 0 Ead/Ea22-like protein HSP70 PF00012.20 gi|304315414|ref|YP_003850561.1| - 3.8e-231 768.5 15.5 1.8e-228 759.6 15.5 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|304315414|ref|YP_003850561.1| - 1.4e-19 70.2 4.6 1.4e-19 70.2 4.6 2.4 2 2 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.16 gi|304315414|ref|YP_003850561.1| - 1.2e-05 25.2 0.0 2e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain StbA PF06406.11 gi|304315414|ref|YP_003850561.1| - 0.0015 17.9 0.3 0.019 14.2 0.1 2.3 1 1 1 2 2 2 1 StbA protein RNA_pol_Rpb2_2 PF04561.14 gi|304315414|ref|YP_003850561.1| - 0.077 12.6 2.6 0.16 11.6 2.6 1.6 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 2 NOG1_N PF17835.1 gi|304315414|ref|YP_003850561.1| - 0.46 10.4 7.1 0.15 12.0 3.8 1.8 2 0 0 2 2 2 0 NOG1 N-terminal helical domain DUF1090 PF06476.12 gi|304315414|ref|YP_003850561.1| - 1.1 9.4 13.4 3.1 8.0 13.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) DnaJ_C PF01556.18 gi|304315415|ref|YP_003850562.1| - 3.6e-46 156.9 0.0 5.1e-46 156.4 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|304315415|ref|YP_003850562.1| - 1.6e-27 95.4 4.0 2.9e-27 94.6 4.0 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|304315415|ref|YP_003850562.1| - 8.4e-14 51.7 16.3 1.4e-13 51.0 16.3 1.4 1 0 0 1 1 1 1 DnaJ central domain TackOD1 PF18551.1 gi|304315415|ref|YP_003850562.1| - 0.073 12.7 5.5 0.23 11.1 0.5 2.2 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 Anti-TRAP PF15777.5 gi|304315415|ref|YP_003850562.1| - 0.084 12.9 18.2 0.42 10.6 5.2 2.6 1 1 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DZR PF12773.7 gi|304315415|ref|YP_003850562.1| - 0.6 10.2 9.8 3.4 7.7 9.7 2.0 1 1 1 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|304315415|ref|YP_003850562.1| - 4.1 7.5 9.5 8.6 6.4 0.8 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4131 PF13567.6 gi|304315416|ref|YP_003850563.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Phasin PF05597.11 gi|304315417|ref|YP_003850564.1| - 0.00019 21.4 0.4 0.00079 19.4 0.0 1.9 2 0 0 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF948 PF06103.11 gi|304315417|ref|YP_003850564.1| - 0.0039 17.4 4.8 1.6 9.0 0.0 2.9 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) DUF4446 PF14584.6 gi|304315417|ref|YP_003850564.1| - 0.021 14.8 0.5 1.7 8.6 0.1 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) FtsH_ext PF06480.15 gi|304315417|ref|YP_003850564.1| - 0.03 14.7 0.0 0.057 13.8 0.0 1.5 1 1 0 1 1 1 0 FtsH Extracellular NTS_2 PF15448.6 gi|304315417|ref|YP_003850564.1| - 0.032 14.6 0.8 0.11 12.9 0.8 2.0 1 1 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein CLZ PF16526.5 gi|304315417|ref|YP_003850564.1| - 0.038 14.3 2.2 0.064 13.6 2.2 1.4 1 1 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Matrilin_ccoil PF10393.9 gi|304315417|ref|YP_003850564.1| - 0.076 12.9 1.7 1 9.3 0.1 2.6 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin BLOC1_2 PF10046.9 gi|304315417|ref|YP_003850564.1| - 0.077 13.3 1.3 0.12 12.7 1.3 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 gi|304315417|ref|YP_003850564.1| - 0.091 13.2 0.3 0.73 10.3 0.1 2.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein ABC_tran_CTD PF16326.5 gi|304315417|ref|YP_003850564.1| - 0.16 12.2 4.8 0.16 12.2 3.4 1.7 1 1 1 2 2 2 0 ABC transporter C-terminal domain DUF4381 PF14316.6 gi|304315418|ref|YP_003850565.1| - 0.053 13.8 1.2 0.065 13.5 0.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4381) AAA_31 PF13614.6 gi|304315418|ref|YP_003850565.1| - 0.06 13.3 1.9 0.067 13.1 1.6 1.3 1 1 0 1 1 1 0 AAA domain Allexi_40kDa PF05549.11 gi|304315418|ref|YP_003850565.1| - 0.07 12.6 0.6 0.11 12.0 0.2 1.5 1 1 0 1 1 1 0 Allexivirus 40kDa protein Claudin_3 PF06653.11 gi|304315418|ref|YP_003850565.1| - 0.072 13.0 0.2 0.094 12.6 0.2 1.1 1 0 0 1 1 1 0 Tight junction protein, Claudin-like MFS_4 PF06779.14 gi|304315418|ref|YP_003850565.1| - 0.12 11.6 0.1 0.14 11.4 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB COG2 PF06148.11 gi|304315418|ref|YP_003850565.1| - 0.34 11.0 6.3 0.71 10.0 6.3 1.6 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 BST2 PF16716.5 gi|304315418|ref|YP_003850565.1| - 1.3 9.7 8.9 0.17 12.5 2.5 2.0 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 LapA_dom PF06305.11 gi|304315418|ref|YP_003850565.1| - 1.6 8.6 7.4 0.86 9.5 0.7 2.4 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF3139 PF11337.8 gi|304315418|ref|YP_003850565.1| - 2.6 8.7 5.3 1.5e+02 3.1 5.0 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3139) Peptidase_M24 PF00557.24 gi|304315419|ref|YP_003850566.1| - 2.7e-40 138.3 0.0 3.7e-40 137.9 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 FrhB_FdhB_C PF04432.13 gi|304315420|ref|YP_003850567.1| - 2.7e-42 144.2 0.0 3.7e-42 143.8 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|304315420|ref|YP_003850567.1| - 6.6e-29 99.9 0.0 1.2e-28 99.1 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Oxidored_q6 PF01058.22 gi|304315421|ref|YP_003850568.1| - 1.6e-26 92.6 0.1 1.6e-26 92.6 0.1 2.1 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|304315421|ref|YP_003850568.1| - 1.4e-12 46.8 11.1 4.5e-07 29.4 1.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|304315421|ref|YP_003850568.1| - 3.3e-09 36.4 8.4 0.00041 20.3 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304315421|ref|YP_003850568.1| - 1.2e-07 31.4 12.5 0.00087 19.2 2.4 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|304315421|ref|YP_003850568.1| - 1.1e-06 28.6 10.5 3.7e-06 27.0 10.5 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|304315421|ref|YP_003850568.1| - 1.5e-06 28.3 11.9 1.4e-05 25.1 12.0 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|304315421|ref|YP_003850568.1| - 1e-05 26.0 11.8 1e-05 26.0 11.8 2.6 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304315421|ref|YP_003850568.1| - 0.0001 22.3 23.0 0.00083 19.4 12.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304315421|ref|YP_003850568.1| - 0.0064 17.4 15.3 0.029 15.3 3.8 3.3 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|304315421|ref|YP_003850568.1| - 0.014 15.8 19.9 0.051 14.1 2.9 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|304315421|ref|YP_003850568.1| - 0.023 15.2 13.8 0.15 12.6 0.6 3.4 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|304315421|ref|YP_003850568.1| - 0.039 14.7 11.0 0.84 10.4 0.7 3.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain zf-C2H2_11 PF16622.5 gi|304315421|ref|YP_003850568.1| - 0.16 11.8 0.4 0.16 11.8 0.4 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type Fer4_17 PF13534.6 gi|304315421|ref|YP_003850568.1| - 0.88 10.2 20.4 0.25 11.9 2.2 2.8 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|304315421|ref|YP_003850568.1| - 6.3 7.3 22.1 0.36 11.3 3.4 3.0 3 1 1 4 4 3 0 4Fe-4S dicluster domain HycI PF01750.18 gi|304315422|ref|YP_003850569.1| - 2e-38 131.1 0.0 2.4e-38 130.9 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease DUF169 PF02596.15 gi|304315422|ref|YP_003850569.1| - 0.051 13.5 0.1 0.17 11.8 0.1 1.9 1 1 0 1 1 1 0 Uncharacterised ArCR, COG2043 NiFeSe_Hases PF00374.19 gi|304315423|ref|YP_003850570.1| - 1.1e-41 143.3 7.5 1.6e-22 80.1 0.0 5.3 3 2 1 4 4 4 4 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|304315423|ref|YP_003850570.1| - 0.012 14.8 0.0 0.022 13.8 0.0 1.4 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PepSY PF03413.19 gi|304315424|ref|YP_003850571.1| - 3.2e-05 24.4 0.2 5e-05 23.8 0.2 1.3 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain YhzD PF14120.6 gi|304315424|ref|YP_003850571.1| - 0.19 11.9 0.0 0.32 11.2 0.0 1.2 1 0 0 1 1 1 0 YhzD-like protein RAP1 PF07218.11 gi|304315424|ref|YP_003850571.1| - 0.68 8.1 2.7 0.72 8.1 2.7 1.0 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) PAC2 PF09754.9 gi|304315425|ref|YP_003850572.1| - 4.8e-41 141.1 0.0 5.5e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PHP_C PF13263.6 gi|304315426|ref|YP_003850573.1| - 5.9e-05 22.7 0.0 0.00017 21.3 0.0 1.8 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|304315426|ref|YP_003850573.1| - 0.018 15.3 0.0 0.045 14.1 0.0 1.8 1 1 0 1 1 1 0 PHP domain PAC2 PF09754.9 gi|304315427|ref|YP_003850574.1| - 3e-55 187.5 0.0 3.5e-55 187.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.12 gi|304315428|ref|YP_003850575.1| - 3e-22 78.4 3.1 3.3e-22 78.3 3.1 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF1272 PF06906.11 gi|304315428|ref|YP_003850575.1| - 0.0002 21.3 0.9 0.00027 21.0 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) RecR PF02132.15 gi|304315428|ref|YP_003850575.1| - 0.0071 15.9 0.5 0.0095 15.5 0.5 1.2 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|304315428|ref|YP_003850575.1| - 0.013 13.4 0.1 0.013 13.4 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF35_N PF12172.8 gi|304315428|ref|YP_003850575.1| - 0.024 14.5 5.4 0.024 14.5 5.4 1.9 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-UDP PF14569.6 gi|304315428|ref|YP_003850575.1| - 0.063 13.4 2.1 0.089 12.9 2.1 1.2 1 0 0 1 1 1 0 Zinc-binding RING-finger EIF_2_alpha PF07541.12 gi|304315429|ref|YP_003850576.1| - 1.6e-25 89.5 0.0 3.2e-25 88.5 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|304315429|ref|YP_003850576.1| - 9.6e-10 38.7 0.1 1.8e-09 37.8 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain GRAS PF03514.14 gi|304315429|ref|YP_003850576.1| - 0.08 11.9 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 GRAS domain family NOG1_N PF17835.1 gi|304315429|ref|YP_003850576.1| - 0.099 12.6 1.2 0.47 10.4 0.0 2.1 2 0 0 2 2 2 0 NOG1 N-terminal helical domain Ribosomal_S27e PF01667.17 gi|304315430|ref|YP_003850577.1| - 2.3e-29 100.9 1.1 2.5e-29 100.8 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|304315430|ref|YP_003850577.1| - 0.0072 16.0 1.5 0.011 15.5 1.5 1.2 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-BED PF02892.15 gi|304315430|ref|YP_003850577.1| - 0.013 15.5 1.0 0.42 10.7 0.1 2.1 2 0 0 2 2 2 0 BED zinc finger HypA PF01155.19 gi|304315430|ref|YP_003850577.1| - 0.017 15.2 0.3 0.017 15.2 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3797 PF12677.7 gi|304315430|ref|YP_003850577.1| - 0.017 15.0 2.1 1.1 9.1 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-C2H2_12 PF18658.1 gi|304315430|ref|YP_003850577.1| - 0.033 13.8 1.4 0.88 9.2 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger C2H2-type OrfB_Zn_ribbon PF07282.11 gi|304315430|ref|YP_003850577.1| - 0.039 13.9 0.3 0.043 13.7 0.3 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|304315430|ref|YP_003850577.1| - 0.049 13.1 0.7 0.076 12.5 0.7 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.6 gi|304315430|ref|YP_003850577.1| - 0.05 13.6 0.1 0.053 13.6 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Stc1 PF12898.7 gi|304315430|ref|YP_003850577.1| - 0.059 13.9 0.3 0.066 13.8 0.3 1.1 1 0 0 1 1 1 0 Stc1 domain zinc_ribbon_6 PF14599.6 gi|304315430|ref|YP_003850577.1| - 0.092 12.8 0.9 0.14 12.2 0.9 1.4 1 0 0 1 1 1 0 Zinc-ribbon Ribosomal_L44 PF00935.19 gi|304315431|ref|YP_003850578.1| - 8.4e-25 87.1 3.8 1.2e-24 86.5 3.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|304315431|ref|YP_003850578.1| - 2.8e-05 24.5 2.9 0.0017 18.7 0.7 2.4 2 0 0 2 2 2 1 Ribosomal protein L33 NOB1_Zn_bind PF08772.11 gi|304315431|ref|YP_003850578.1| - 0.0019 18.3 1.8 0.073 13.2 0.1 2.1 2 0 0 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|304315431|ref|YP_003850578.1| - 0.0099 15.6 4.5 0.56 10.0 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|304315431|ref|YP_003850578.1| - 0.011 15.8 1.3 2.8 8.1 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|304315431|ref|YP_003850578.1| - 0.012 15.4 2.2 0.35 10.7 0.5 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.12 gi|304315431|ref|YP_003850578.1| - 0.064 12.8 0.5 3.8 7.1 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.6 gi|304315431|ref|YP_003850578.1| - 0.065 13.3 2.7 0.99 9.5 0.5 2.1 2 0 0 2 2 2 0 Transposase zinc-binding domain zf-trcl PF13451.6 gi|304315431|ref|YP_003850578.1| - 0.078 12.9 2.6 2.4 8.1 0.1 2.3 2 0 0 2 2 2 0 Probable zinc-ribbon domain zf-LITAF-like PF10601.9 gi|304315431|ref|YP_003850578.1| - 0.085 13.1 0.8 1.6 9.1 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-H2C2_2 PF13465.6 gi|304315431|ref|YP_003850578.1| - 0.16 12.5 4.7 7.7 7.1 0.5 2.4 2 0 0 2 2 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.6 gi|304315431|ref|YP_003850578.1| - 0.16 11.4 2.1 7 6.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|304315431|ref|YP_003850578.1| - 1.5 8.9 6.7 17 5.5 2.5 2.4 2 1 0 2 2 2 0 Transposase zinc-ribbon domain PCNA_N PF00705.18 gi|304315433|ref|YP_003850580.1| - 1.8e-22 79.4 0.5 3.5e-22 78.5 0.5 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.13 gi|304315433|ref|YP_003850580.1| - 1.4e-10 41.1 0.0 1.7e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.16 gi|304315433|ref|YP_003850580.1| - 3.8e-06 26.2 0.2 0.001 18.2 0.0 2.3 1 1 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 PCNA_C PF02747.15 gi|304315433|ref|YP_003850580.1| - 4.1e-06 27.0 0.5 0.00088 19.4 0.1 3.2 2 2 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Hus1 PF04005.12 gi|304315433|ref|YP_003850580.1| - 0.00061 19.0 0.0 0.001 18.3 0.0 1.5 2 0 0 2 2 2 1 Hus1-like protein DNA_pol3_beta_2 PF02767.16 gi|304315433|ref|YP_003850580.1| - 0.0033 17.6 0.2 0.016 15.4 0.1 2.0 2 0 0 2 2 2 1 DNA polymerase III beta subunit, central domain DNA_pol3_beta PF00712.19 gi|304315433|ref|YP_003850580.1| - 0.099 12.8 0.6 0.19 11.9 0.2 1.6 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain SLC35F PF06027.12 gi|304315434|ref|YP_003850581.1| - 0.007 15.9 1.0 0.007 15.9 1.0 1.0 1 0 0 1 1 1 1 Solute carrier family 35 DUF2157 PF09925.9 gi|304315434|ref|YP_003850581.1| - 0.0082 15.9 3.7 0.57 10.0 0.3 2.1 2 0 0 2 2 2 2 Predicted membrane protein (DUF2157) DUF4231 PF14015.6 gi|304315434|ref|YP_003850581.1| - 0.012 16.0 0.1 0.015 15.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF2754 PF10953.8 gi|304315434|ref|YP_003850581.1| - 0.021 15.1 1.7 0.037 14.3 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2754) ABC2_membrane_5 PF13346.6 gi|304315434|ref|YP_003850581.1| - 0.021 14.4 2.8 0.024 14.2 2.8 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Borrelia_P13 PF05628.12 gi|304315434|ref|YP_003850581.1| - 0.044 13.7 0.6 0.056 13.4 0.6 1.1 1 0 0 1 1 1 0 Borrelia membrane protein P13 Wzy_C PF04932.15 gi|304315434|ref|YP_003850581.1| - 0.046 13.3 0.2 0.051 13.2 0.2 1.1 1 0 0 1 1 1 0 O-Antigen ligase DUF599 PF04654.12 gi|304315434|ref|YP_003850581.1| - 0.063 12.7 0.1 0.071 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF599 ATP1G1_PLM_MAT8 PF02038.16 gi|304315434|ref|YP_003850581.1| - 0.08 12.4 4.8 0.34 10.4 0.2 2.2 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF4134 PF13572.6 gi|304315434|ref|YP_003850581.1| - 0.084 13.2 1.9 0.13 12.6 2.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4134) DUF3098 PF11297.8 gi|304315434|ref|YP_003850581.1| - 0.43 10.2 5.6 0.92 9.2 5.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3098) SecE PF00584.20 gi|304315434|ref|YP_003850581.1| - 0.74 9.8 0.1 0.74 9.8 0.1 2.4 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex SdpI PF13630.6 gi|304315434|ref|YP_003850581.1| - 1.7 8.8 6.0 2.8 8.2 5.8 1.4 1 1 0 1 1 1 0 SdpI/YhfL protein family DUF202 PF02656.15 gi|304315434|ref|YP_003850581.1| - 5.6 7.5 9.5 11 6.6 0.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Gram_pos_anchor PF00746.21 gi|304315434|ref|YP_003850581.1| - 8.8 6.4 6.3 29 4.7 0.3 2.5 2 0 0 2 2 2 0 LPXTG cell wall anchor motif TFIIS_C PF01096.18 gi|304315435|ref|YP_003850582.1| - 2.7e-17 62.3 7.8 2.7e-17 62.3 7.8 2.6 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|304315435|ref|YP_003850582.1| - 8.9e-07 28.7 18.7 1.7e-05 24.6 2.6 3.3 3 0 0 3 3 3 2 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|304315435|ref|YP_003850582.1| - 0.00021 21.2 2.3 0.00021 21.2 2.3 2.4 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|304315435|ref|YP_003850582.1| - 0.00049 19.7 2.7 0.00049 19.7 2.7 2.7 3 0 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|304315435|ref|YP_003850582.1| - 0.0023 17.6 10.1 0.18 11.6 0.3 4.1 4 0 0 4 4 4 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|304315435|ref|YP_003850582.1| - 0.0053 16.7 11.9 0.18 11.7 1.0 2.8 2 1 0 2 2 2 2 Putative transposase DNA-binding domain IBR PF01485.21 gi|304315435|ref|YP_003850582.1| - 0.034 14.4 10.5 1.1 9.6 1.6 2.6 2 1 0 2 2 2 0 IBR domain, a half RING-finger domain zf-ACC PF17848.1 gi|304315435|ref|YP_003850582.1| - 0.034 14.2 8.5 3.7 7.7 0.2 3.6 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain DUF2752 PF10825.8 gi|304315435|ref|YP_003850582.1| - 0.044 13.8 1.3 0.24 11.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zf-ribbon_3 PF13248.6 gi|304315435|ref|YP_003850582.1| - 0.047 13.1 11.6 0.15 11.5 0.1 3.2 4 0 0 4 4 4 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|304315435|ref|YP_003850582.1| - 0.047 13.8 2.6 7.4 6.8 0.1 2.9 3 0 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 SelR PF01641.18 gi|304315435|ref|YP_003850582.1| - 0.055 13.5 2.8 0.066 13.3 1.0 2.1 1 1 1 2 2 2 0 SelR domain CxC4 PF18717.1 gi|304315435|ref|YP_003850582.1| - 0.06 13.2 2.6 0.48 10.3 0.1 2.2 1 1 1 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases TF_Zn_Ribbon PF08271.12 gi|304315435|ref|YP_003850582.1| - 0.092 12.3 9.7 0.61 9.6 1.0 3.1 2 2 0 2 2 2 0 TFIIB zinc-binding FdhE PF04216.12 gi|304315435|ref|YP_003850582.1| - 0.1 12.5 0.2 0.1 12.5 0.2 1.8 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation Anti-TRAP PF15777.5 gi|304315435|ref|YP_003850582.1| - 0.14 12.1 2.5 1.2 9.2 0.0 2.7 3 0 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-TFIIB PF13453.6 gi|304315435|ref|YP_003850582.1| - 0.17 11.3 7.6 1.2 8.5 2.9 2.6 2 1 0 2 2 2 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|304315435|ref|YP_003850582.1| - 0.21 11.2 5.9 7.5 6.2 0.1 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|304315435|ref|YP_003850582.1| - 0.27 11.3 11.6 0.34 11.0 1.4 2.8 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|304315435|ref|YP_003850582.1| - 0.59 10.1 17.0 1.4 8.9 0.7 3.8 5 0 0 5 5 3 0 zinc-ribbon domain DUF35_N PF12172.8 gi|304315435|ref|YP_003850582.1| - 0.63 10.0 10.9 0.99 9.3 2.6 3.0 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Lar_restr_allev PF14354.6 gi|304315435|ref|YP_003850582.1| - 0.85 10.0 9.0 0.45 10.9 0.4 2.9 2 1 0 2 2 2 0 Restriction alleviation protein Lar VP_N-CPKC PF11475.8 gi|304315435|ref|YP_003850582.1| - 0.89 9.5 7.9 4.1 7.4 0.2 2.6 3 0 0 3 3 2 0 Virion protein N terminal domain A2L_zn_ribbon PF08792.10 gi|304315435|ref|YP_003850582.1| - 1.1 9.1 0.1 1.1 9.1 0.1 3.6 4 0 0 4 4 3 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|304315435|ref|YP_003850582.1| - 1.6 8.9 11.3 6.7 6.9 0.1 3.8 4 0 0 4 4 4 0 Zinc ribbon domain HypA PF01155.19 gi|304315435|ref|YP_003850582.1| - 1.8 8.6 8.4 7.6 6.6 3.1 2.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3797 PF12677.7 gi|304315435|ref|YP_003850582.1| - 1.9 8.4 0.1 1.9 8.4 0.1 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF3797) zf-H2C2_2 PF13465.6 gi|304315435|ref|YP_003850582.1| - 2.1 8.9 7.9 7 7.3 0.1 3.3 3 0 0 3 3 3 0 Zinc-finger double domain Mu-like_Com PF10122.9 gi|304315435|ref|YP_003850582.1| - 2.7 7.5 5.0 9.5 5.8 0.0 2.9 3 0 0 3 3 3 0 Mu-like prophage protein Com zinc-ribbons_6 PF07191.12 gi|304315435|ref|YP_003850582.1| - 4.5 7.3 9.5 2.8 8.0 0.5 2.8 3 1 1 4 4 3 0 zinc-ribbons DUF1936 PF09151.10 gi|304315435|ref|YP_003850582.1| - 4.9 7.1 16.9 3 7.9 0.2 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF1936) DUF2387 PF09526.10 gi|304315435|ref|YP_003850582.1| - 8 6.7 11.9 0.26 11.5 1.5 2.7 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Ribosomal_L37e PF01907.19 gi|304315435|ref|YP_003850582.1| - 8.7 6.6 12.7 0.28 11.4 0.4 3.0 2 1 0 2 2 2 0 Ribosomal protein L37e NUDIX PF00293.28 gi|304315436|ref|YP_003850583.1| - 2.1e-23 82.8 0.0 2.3e-23 82.7 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain DUF99 PF01949.16 gi|304315437|ref|YP_003850584.1| - 1.7e-67 226.4 0.1 1.9e-67 226.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Endonuclease_5 PF04493.14 gi|304315437|ref|YP_003850584.1| - 0.074 12.7 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Endonuclease V DUF2066 PF09839.9 gi|304315437|ref|YP_003850584.1| - 0.088 12.2 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2066) RNA_pol_L_2 PF13656.6 gi|304315438|ref|YP_003850585.1| - 8.8e-20 70.3 0.0 1.1e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|304315438|ref|YP_003850585.1| - 8.9e-05 21.9 0.0 0.00022 20.6 0.0 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain ECR1_N PF14382.6 gi|304315439|ref|YP_003850586.1| - 1.3e-08 34.5 0.0 2.2e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|304315439|ref|YP_003850586.1| - 2.2e-05 25.0 2.1 0.051 14.2 0.1 2.9 2 2 2 4 4 4 2 Exosome component EXOSC1/CSL4 A2L_zn_ribbon PF08792.10 gi|304315439|ref|YP_003850586.1| - 0.00062 19.4 0.9 0.0011 18.6 0.9 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain HypA PF01155.19 gi|304315439|ref|YP_003850586.1| - 0.0084 16.1 0.1 0.013 15.5 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-UDP PF14569.6 gi|304315439|ref|YP_003850586.1| - 0.025 14.7 0.3 0.038 14.1 0.3 1.3 1 0 0 1 1 1 0 Zinc-binding RING-finger zinc_ribbon_4 PF13717.6 gi|304315439|ref|YP_003850586.1| - 0.026 14.4 1.4 3.6 7.6 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|304315439|ref|YP_003850586.1| - 0.042 13.9 0.9 0.071 13.2 0.9 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain DNA_RNApol_7kD PF03604.13 gi|304315439|ref|YP_003850586.1| - 0.098 12.4 3.3 0.19 11.4 3.3 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Spt4 PF06093.13 gi|304315439|ref|YP_003850586.1| - 0.13 12.4 1.5 0.24 11.5 1.5 1.4 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Defensin_5 PF18251.1 gi|304315439|ref|YP_003850586.1| - 0.15 12.2 0.7 0.26 11.4 0.7 1.4 1 0 0 1 1 1 0 Fungal defensin Copsin Diphthamide_syn PF01866.17 gi|304315440|ref|YP_003850587.1| - 6.6e-87 291.8 0.0 8.3e-87 291.4 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF2800 PF10926.8 gi|304315440|ref|YP_003850587.1| - 0.22 10.7 0.0 0.82 8.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2800) Pribosyltran PF00156.27 gi|304315441|ref|YP_003850588.1| - 1.1e-19 70.5 1.0 1.6e-19 70.0 1.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|304315441|ref|YP_003850588.1| - 6e-05 22.6 0.1 8.1e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|304315441|ref|YP_003850588.1| - 0.003 17.1 0.2 0.0041 16.6 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase SRP54 PF00448.22 gi|304315442|ref|YP_003850589.1| - 6.3e-73 244.6 0.0 1.2e-72 243.7 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|304315442|ref|YP_003850589.1| - 7e-30 103.6 6.0 2.9e-29 101.6 3.9 2.7 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|304315442|ref|YP_003850589.1| - 4.7e-19 68.4 0.6 4.7e-19 68.4 0.6 2.6 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|304315442|ref|YP_003850589.1| - 0.00011 22.2 0.0 0.0003 20.9 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.6 gi|304315442|ref|YP_003850589.1| - 0.00013 22.4 0.2 0.00033 21.1 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|304315442|ref|YP_003850589.1| - 0.00017 21.9 0.1 0.0057 16.9 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|304315442|ref|YP_003850589.1| - 0.00029 21.0 0.0 0.00062 20.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|304315442|ref|YP_003850589.1| - 0.0014 18.5 0.4 0.016 15.0 0.0 2.8 4 0 0 4 4 4 1 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|304315442|ref|YP_003850589.1| - 0.0014 18.5 0.0 0.0037 17.2 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Arf PF00025.21 gi|304315442|ref|YP_003850589.1| - 0.0015 18.1 0.0 0.0035 16.8 0.0 1.6 1 0 0 1 1 1 1 ADP-ribosylation factor family NTPase_1 PF03266.15 gi|304315442|ref|YP_003850589.1| - 0.0015 18.5 1.1 0.01 15.8 0.1 2.4 2 0 0 2 2 2 1 NTPase AAA_17 PF13207.6 gi|304315442|ref|YP_003850589.1| - 0.0016 18.9 0.1 0.0016 18.9 0.1 3.2 4 0 0 4 4 4 1 AAA domain G-alpha PF00503.20 gi|304315442|ref|YP_003850589.1| - 0.0025 17.0 0.1 0.011 14.9 0.0 2.0 2 1 0 2 2 2 1 G-protein alpha subunit AAA_18 PF13238.6 gi|304315442|ref|YP_003850589.1| - 0.0039 17.7 0.0 0.013 16.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|304315442|ref|YP_003850589.1| - 0.0043 16.1 0.5 0.016 14.2 0.0 2.1 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|304315442|ref|YP_003850589.1| - 0.0054 16.0 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin ResIII PF04851.15 gi|304315442|ref|YP_003850589.1| - 0.0059 16.6 0.2 0.013 15.5 0.2 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|304315442|ref|YP_003850589.1| - 0.0069 16.1 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain 6PF2K PF01591.18 gi|304315442|ref|YP_003850589.1| - 0.007 15.7 0.0 0.015 14.6 0.0 1.6 1 0 0 1 1 1 1 6-phosphofructo-2-kinase OTCace PF00185.24 gi|304315442|ref|YP_003850589.1| - 0.0072 16.4 0.3 4.3 7.4 0.0 3.4 2 2 1 3 3 3 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MMR_HSR1 PF01926.23 gi|304315442|ref|YP_003850589.1| - 0.0072 16.4 0.8 0.02 15.0 0.1 2.1 2 1 0 2 2 1 1 50S ribosome-binding GTPase MipZ PF09140.11 gi|304315442|ref|YP_003850589.1| - 0.0095 15.2 0.3 0.8 8.9 0.3 2.4 1 1 0 1 1 1 1 ATPase MipZ LpxK PF02606.14 gi|304315442|ref|YP_003850589.1| - 0.015 14.4 0.0 0.08 12.0 0.0 2.0 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase RNA_helicase PF00910.22 gi|304315442|ref|YP_003850589.1| - 0.019 15.3 0.0 0.27 11.6 0.0 2.3 1 1 0 1 1 1 0 RNA helicase cobW PF02492.19 gi|304315442|ref|YP_003850589.1| - 0.022 14.3 2.2 0.56 9.8 2.2 2.3 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.20 gi|304315442|ref|YP_003850589.1| - 0.027 14.3 0.0 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase ATPase_2 PF01637.18 gi|304315442|ref|YP_003850589.1| - 0.028 14.3 0.1 0.073 13.0 0.1 1.7 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA PF00004.29 gi|304315442|ref|YP_003850589.1| - 0.055 13.9 0.1 0.54 10.7 0.1 2.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.10 gi|304315442|ref|YP_003850589.1| - 0.071 12.5 0.0 0.17 11.3 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_7 PF12775.7 gi|304315442|ref|YP_003850589.1| - 0.078 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|304315442|ref|YP_003850589.1| - 0.13 12.3 2.0 0.2 11.7 0.1 2.6 3 2 1 4 4 2 0 AAA domain (dynein-related subfamily) Flavodoxin_3 PF12641.7 gi|304315442|ref|YP_003850589.1| - 0.16 11.7 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin domain Pox_A32 PF04665.12 gi|304315442|ref|YP_003850589.1| - 0.19 11.1 1.0 0.61 9.5 0.1 2.2 3 0 0 3 3 3 0 Poxvirus A32 protein Thymidylate_kin PF02223.17 gi|304315442|ref|YP_003850589.1| - 0.59 9.8 5.3 0.43 10.2 0.3 2.8 3 0 0 3 3 3 0 Thymidylate kinase THUMP PF02926.17 gi|304315443|ref|YP_003850590.1| - 5.1e-11 42.9 2.1 6.1e-11 42.6 0.1 2.0 2 0 0 2 2 2 1 THUMP domain Ribosomal_L21e PF01157.18 gi|304315444|ref|YP_003850591.1| - 2.3e-31 107.7 2.5 2.5e-31 107.5 2.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|304315445|ref|YP_003850592.1| - 6e-07 29.8 0.0 1e-06 29.1 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb4 NIR_SIR_ferr PF03460.17 gi|304315445|ref|YP_003850592.1| - 0.0033 17.2 0.0 0.034 14.0 0.0 2.3 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain DUF655 PF04919.12 gi|304315446|ref|YP_003850593.1| - 1.2e-80 269.8 0.3 1.3e-80 269.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|304315446|ref|YP_003850593.1| - 0.00064 19.9 0.0 0.001 19.3 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|304315446|ref|YP_003850593.1| - 0.0052 17.0 0.0 0.0096 16.2 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif RrnaAD PF00398.20 gi|304315447|ref|YP_003850594.1| - 2.6e-46 157.9 0.0 3e-46 157.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|304315447|ref|YP_003850594.1| - 3.3e-06 27.7 0.0 7.8e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|304315447|ref|YP_003850594.1| - 0.00075 19.3 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.12 gi|304315447|ref|YP_003850594.1| - 0.0013 19.3 0.0 0.0033 18.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|304315447|ref|YP_003850594.1| - 0.023 14.5 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SAM_MT PF04445.13 gi|304315447|ref|YP_003850594.1| - 0.068 12.6 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase MTS PF05175.14 gi|304315447|ref|YP_003850594.1| - 0.097 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|304315447|ref|YP_003850594.1| - 0.17 11.7 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|304315447|ref|YP_003850594.1| - 0.21 11.4 0.0 0.45 10.3 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain DUF2921 PF11145.8 gi|304315448|ref|YP_003850595.1| - 0.015 13.2 0.2 0.017 13.0 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2921) DUF3043 PF11241.8 gi|304315448|ref|YP_003850595.1| - 0.14 12.2 7.1 1.5 8.8 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3043) HTH_3 PF01381.22 gi|304315449|ref|YP_003850596.1| - 1.2e-16 60.5 0.1 1.3e-16 60.4 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|304315449|ref|YP_003850596.1| - 1.5e-10 41.3 0.1 1.7e-10 41.0 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|304315449|ref|YP_003850596.1| - 2.1e-09 37.2 0.2 2.2e-09 37.2 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|304315449|ref|YP_003850596.1| - 1.7e-05 24.7 0.1 3e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_25 PF13413.6 gi|304315449|ref|YP_003850596.1| - 0.00051 19.8 0.1 0.00078 19.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|304315449|ref|YP_003850596.1| - 0.0013 18.3 0.3 0.0019 17.7 0.3 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 MqsA_antitoxin PF15731.5 gi|304315449|ref|YP_003850596.1| - 0.0014 18.7 0.0 0.0015 18.7 0.0 1.1 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_23 PF13384.6 gi|304315449|ref|YP_003850596.1| - 0.0018 18.0 0.1 0.0028 17.4 0.1 1.3 1 1 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|304315449|ref|YP_003850596.1| - 0.002 18.0 0.1 0.0029 17.5 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_37 PF13744.6 gi|304315449|ref|YP_003850596.1| - 0.0059 16.5 0.0 0.0062 16.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|304315449|ref|YP_003850596.1| - 0.0077 15.8 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MerR PF00376.23 gi|304315449|ref|YP_003850596.1| - 0.028 14.2 0.0 0.055 13.2 0.0 1.4 1 0 0 1 1 1 0 MerR family regulatory protein DUF1323 PF07037.11 gi|304315449|ref|YP_003850596.1| - 0.042 14.2 0.1 0.054 13.9 0.1 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) YdaS_antitoxin PF15943.5 gi|304315449|ref|YP_003850596.1| - 0.064 13.1 0.0 0.079 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_28 PF13518.6 gi|304315449|ref|YP_003850596.1| - 0.067 13.3 0.0 0.095 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|304315449|ref|YP_003850596.1| - 0.071 13.5 0.0 0.081 13.4 0.0 1.1 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_AsnC-type PF13404.6 gi|304315449|ref|YP_003850596.1| - 0.086 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 gi|304315449|ref|YP_003850596.1| - 0.11 12.6 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MTS PF05175.14 gi|304315450|ref|YP_003850597.1| - 3e-17 62.7 0.0 2.9e-13 49.7 0.0 2.0 2 0 0 2 2 2 2 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|304315450|ref|YP_003850597.1| - 2.2e-11 44.3 0.0 6.7e-10 39.6 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|304315450|ref|YP_003850597.1| - 7.4e-11 42.1 0.0 1.1e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|304315450|ref|YP_003850597.1| - 1.5e-10 41.0 0.1 3.1e-09 36.7 0.1 2.0 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|304315450|ref|YP_003850597.1| - 3.7e-09 37.1 0.0 2.4e-08 34.5 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|304315450|ref|YP_003850597.1| - 6.2e-08 33.3 0.0 1.7e-06 28.7 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|304315450|ref|YP_003850597.1| - 8.2e-08 32.3 0.0 6.3e-07 29.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|304315450|ref|YP_003850597.1| - 2.1e-05 24.3 0.1 3.3e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Met_10 PF02475.16 gi|304315450|ref|YP_003850597.1| - 6.1e-05 22.9 0.0 9.2e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein CMAS PF02353.20 gi|304315450|ref|YP_003850597.1| - 0.00074 18.9 0.0 0.0045 16.3 0.0 1.8 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.18 gi|304315450|ref|YP_003850597.1| - 0.0011 18.7 0.0 0.0052 16.5 0.0 1.8 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 TRM PF02005.16 gi|304315450|ref|YP_003850597.1| - 0.0053 16.0 0.0 0.0093 15.2 0.0 1.4 2 0 0 2 2 2 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_18 PF12847.7 gi|304315450|ref|YP_003850597.1| - 0.019 14.9 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0146 PF03686.13 gi|304315450|ref|YP_003850597.1| - 0.022 14.7 0.1 0.054 13.4 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0146) Methyltransf_8 PF05148.15 gi|304315450|ref|YP_003850597.1| - 0.034 14.0 0.1 0.41 10.5 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase Methyltransf_24 PF13578.6 gi|304315450|ref|YP_003850597.1| - 0.036 15.1 0.0 0.085 13.9 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|304315450|ref|YP_003850597.1| - 0.053 13.3 0.0 0.094 12.5 0.0 1.4 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.10 gi|304315450|ref|YP_003850597.1| - 0.099 12.2 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DAP_epimerase PF01678.19 gi|304315451|ref|YP_003850598.1| - 2.5e-71 237.5 0.7 7e-38 129.5 0.3 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Orn_Arg_deC_N PF02784.16 gi|304315452|ref|YP_003850599.1| - 1.4e-56 191.6 0.0 1.9e-56 191.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|304315452|ref|YP_003850599.1| - 1.5e-25 89.3 0.0 1.6e-25 89.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|304315452|ref|YP_003850599.1| - 3.6e-05 23.5 0.0 6.3e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain NUDIX PF00293.28 gi|304315453|ref|YP_003850600.1| - 4.5e-20 72.0 0.1 5.2e-20 71.8 0.1 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|304315453|ref|YP_003850600.1| - 0.00073 19.5 0.0 0.00089 19.2 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Aminotran_3 PF00202.21 gi|304315454|ref|YP_003850601.1| - 2.6e-121 405.1 0.0 3.1e-121 404.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|304315454|ref|YP_003850601.1| - 7e-07 28.7 0.0 1e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|304315454|ref|YP_003850601.1| - 3.5e-05 22.9 0.0 5.4e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Pro_isomerase PF00160.21 gi|304315455|ref|YP_003850602.1| - 4.1e-47 160.4 0.0 4.6e-47 160.2 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GAF_2 PF13185.6 gi|304315456|ref|YP_003850603.1| - 7.9e-18 65.1 0.0 8.9e-18 64.9 0.0 1.0 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|304315456|ref|YP_003850603.1| - 0.00097 19.8 0.0 0.0011 19.6 0.0 1.1 1 0 0 1 1 1 1 GAF domain HhH-GPD PF00730.25 gi|304315458|ref|YP_003850605.1| - 2.9e-24 85.6 0.0 4.5e-24 85.0 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|304315458|ref|YP_003850605.1| - 6.9e-06 25.7 0.1 2.4e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif OGG_N PF07934.12 gi|304315458|ref|YP_003850605.1| - 1.8e-05 24.8 0.0 7.6e-05 22.8 0.0 1.9 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HHH_5 PF14520.6 gi|304315458|ref|YP_003850605.1| - 0.16 12.6 0.0 0.43 11.2 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain His_biosynth PF00977.21 gi|304315459|ref|YP_003850606.1| - 1.4e-85 286.4 0.0 1.7e-85 286.1 0.0 1.1 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|304315459|ref|YP_003850606.1| - 1.3e-09 37.7 0.1 7.1e-05 22.2 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|304315459|ref|YP_003850606.1| - 3.6e-06 26.5 0.0 0.0025 17.3 0.0 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator NMO PF03060.15 gi|304315459|ref|YP_003850606.1| - 4.6e-06 26.3 0.1 0.0037 16.7 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase IMPDH PF00478.25 gi|304315459|ref|YP_003850606.1| - 5e-05 22.4 0.1 0.19 10.7 0.1 2.3 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|304315459|ref|YP_003850606.1| - 8.9e-05 21.8 0.0 0.082 12.1 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|304315459|ref|YP_003850606.1| - 0.00081 18.8 0.1 0.95 8.8 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase Dus PF01207.17 gi|304315459|ref|YP_003850606.1| - 0.00099 18.3 0.0 0.022 13.8 0.0 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) PcrB PF01884.17 gi|304315459|ref|YP_003850606.1| - 0.025 14.1 0.0 0.046 13.2 0.0 1.5 1 0 0 1 1 1 0 PcrB family FMN_dh PF01070.18 gi|304315459|ref|YP_003850606.1| - 0.029 13.4 0.0 0.41 9.6 0.0 2.2 2 0 0 2 2 2 0 FMN-dependent dehydrogenase DUF561 PF04481.12 gi|304315459|ref|YP_003850606.1| - 0.048 12.8 0.1 3.4 6.8 0.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF561) dTDP_sugar_isom PF00908.17 gi|304315460|ref|YP_003850607.1| - 3.8e-07 29.9 0.0 4.1e-07 29.8 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_2 PF07883.11 gi|304315460|ref|YP_003850607.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Cupin domain FdtA PF05523.11 gi|304315461|ref|YP_003850608.1| - 8.6e-06 25.5 0.0 9.2e-06 25.4 0.0 1.0 1 0 0 1 1 1 1 WxcM-like, C-terminal dTDP_sugar_isom PF00908.17 gi|304315461|ref|YP_003850608.1| - 2.6e-05 24.0 0.0 2.7e-05 23.9 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Flavin_Reduct PF01613.18 gi|304315462|ref|YP_003850609.1| - 5.9e-16 58.9 0.0 6.7e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.12 gi|304315462|ref|YP_003850609.1| - 0.023 14.5 0.0 0.08 12.7 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF447) DUF1462 PF07315.11 gi|304315462|ref|YP_003850609.1| - 0.027 14.7 0.0 0.059 13.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1462) DUF2070 PF09843.9 gi|304315463|ref|YP_003850610.1| - 0.026 12.8 3.0 0.029 12.7 3.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TMEM138 PF14935.6 gi|304315463|ref|YP_003850610.1| - 0.66 10.6 5.0 0.42 11.3 3.4 1.4 1 1 0 1 1 1 0 Transmembrane protein 138 Peptidase_C39 PF03412.15 gi|304315464|ref|YP_003850611.1| - 5.9e-28 97.3 0.0 8.1e-28 96.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase C39 family Peptidase_C39_2 PF13529.6 gi|304315464|ref|YP_003850611.1| - 3.5e-06 27.6 2.1 0.0001 22.9 0.1 2.9 2 1 1 3 3 3 1 Peptidase_C39 like family DUF3335 PF11814.8 gi|304315464|ref|YP_003850611.1| - 0.01 15.4 0.5 0.046 13.2 0.3 1.9 1 1 1 2 2 2 0 Peptidase_C39 like family Prot_ATP_OB_N PF17758.1 gi|304315464|ref|YP_003850611.1| - 0.16 11.7 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Proteasomal ATPase OB N-terminal domain FUSC_2 PF13515.6 gi|304315468|ref|YP_003850615.1| - 2.1 8.5 10.0 1.1 9.4 3.6 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein-like DiS_P_DiS PF06750.13 gi|304315469|ref|YP_003850616.1| - 0.08 13.1 0.1 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain MNHE PF01899.16 gi|304315469|ref|YP_003850616.1| - 0.3 10.8 3.8 0.47 10.2 3.8 1.4 1 1 0 1 1 1 0 Na+/H+ ion antiporter subunit NEMP PF10225.9 gi|304315469|ref|YP_003850616.1| - 9.1 5.9 11.1 6.7 6.3 1.6 2.0 1 1 1 2 2 2 0 NEMP family FmdE PF02663.14 gi|304315470|ref|YP_003850617.1| - 3.2e-36 124.3 0.1 4.2e-36 123.9 0.1 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|304315470|ref|YP_003850617.1| - 4e-10 39.5 4.1 4e-10 39.5 4.1 1.7 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|304315470|ref|YP_003850617.1| - 0.0096 16.1 0.1 0.018 15.2 0.1 1.4 1 0 0 1 1 1 1 LIM domain Helicase_C_2 PF13307.6 gi|304315471|ref|YP_003850618.1| - 6.8e-17 62.2 0.3 2.5e-16 60.3 0.1 2.0 2 1 0 2 2 2 1 Helicase C-terminal domain ResIII PF04851.15 gi|304315471|ref|YP_003850618.1| - 4.7e-07 30.0 0.0 9.1e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD_2 PF06733.15 gi|304315471|ref|YP_003850618.1| - 3.2e-05 23.6 0.0 5.9e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|304315471|ref|YP_003850618.1| - 0.0053 16.6 0.1 2.4 7.9 0.0 2.7 3 0 0 3 3 3 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|304315471|ref|YP_003850618.1| - 0.049 14.0 0.0 0.11 12.8 0.0 1.7 1 0 0 1 1 1 0 Helicase conserved C-terminal domain AAA_30 PF13604.6 gi|304315471|ref|YP_003850618.1| - 0.05 13.3 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|304315471|ref|YP_003850618.1| - 0.084 12.3 0.4 9 5.7 0.1 2.5 3 0 0 3 3 3 0 PhoH-like protein DUF3560 PF12083.8 gi|304315471|ref|YP_003850618.1| - 0.17 12.0 0.7 4.6 7.4 0.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3560) TP_methylase PF00590.20 gi|304315472|ref|YP_003850619.1| - 2.2e-49 168.3 0.0 2.6e-49 168.1 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases V4R PF02830.18 gi|304315473|ref|YP_003850620.1| - 9.8e-17 60.7 0.1 1.6e-16 60.1 0.1 1.4 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.20 gi|304315473|ref|YP_003850620.1| - 1.9e-12 46.9 0.4 4.6e-12 45.6 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|304315473|ref|YP_003850620.1| - 9.7e-10 38.2 0.1 1.7e-09 37.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|304315473|ref|YP_003850620.1| - 6.8e-05 23.3 0.0 0.00013 22.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|304315473|ref|YP_003850620.1| - 0.0005 19.8 0.0 0.001 18.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|304315473|ref|YP_003850620.1| - 0.00068 19.6 0.0 0.0015 18.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|304315473|ref|YP_003850620.1| - 0.00073 19.4 0.3 0.0014 18.6 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|304315473|ref|YP_003850620.1| - 0.0014 18.1 0.2 0.0049 16.4 0.2 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|304315473|ref|YP_003850620.1| - 0.0069 16.5 0.0 0.025 14.7 0.0 1.8 2 0 0 2 2 2 1 DprA winged helix domain HTH_40 PF14493.6 gi|304315473|ref|YP_003850620.1| - 0.011 16.1 0.0 0.43 11.1 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain RP-C PF03428.13 gi|304315473|ref|YP_003850620.1| - 0.016 14.9 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_36 PF13730.6 gi|304315473|ref|YP_003850620.1| - 0.018 15.0 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.17 gi|304315473|ref|YP_003850620.1| - 0.019 14.8 0.1 0.038 13.8 0.1 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix TrmB PF01978.19 gi|304315473|ref|YP_003850620.1| - 0.034 14.0 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|304315473|ref|YP_003850620.1| - 0.037 14.0 0.1 0.096 12.7 0.1 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Crp PF00325.20 gi|304315473|ref|YP_003850620.1| - 0.38 10.5 2.1 19 5.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family Flavodoxin_1 PF00258.25 gi|304315474|ref|YP_003850621.1| - 5.5e-18 65.5 0.0 1.5e-14 54.5 0.0 2.3 2 0 0 2 2 2 2 Flavodoxin Lactamase_B PF00753.27 gi|304315474|ref|YP_003850621.1| - 2.2e-07 31.1 0.0 4.7e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily PGM_PMM_II PF02879.16 gi|304315474|ref|YP_003850621.1| - 0.0021 18.7 0.0 0.95 10.1 0.0 2.5 2 0 0 2 2 2 2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Flavodoxin_5 PF12724.7 gi|304315474|ref|YP_003850621.1| - 0.013 15.7 0.0 0.025 14.8 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain Lactamase_B_2 PF12706.7 gi|304315474|ref|YP_003850621.1| - 0.018 14.6 0.1 0.039 13.5 0.0 1.6 2 0 0 2 2 2 0 Beta-lactamase superfamily domain FMN_red PF03358.15 gi|304315474|ref|YP_003850621.1| - 0.12 12.1 0.0 1.3 8.8 0.0 2.4 2 1 0 2 2 2 0 NADPH-dependent FMN reductase Rubrerythrin PF02915.17 gi|304315475|ref|YP_003850622.1| - 1.5e-17 64.2 3.9 1e-16 61.5 3.9 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|304315475|ref|YP_003850622.1| - 1.2e-07 31.7 1.2 1e-05 25.5 1.2 2.1 1 1 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.6 gi|304315475|ref|YP_003850622.1| - 0.025 14.8 0.4 3.1 8.0 0.1 2.1 2 0 0 2 2 2 0 Ferritin-like domain CDT1_C PF16679.5 gi|304315475|ref|YP_003850622.1| - 0.1 13.1 0.1 0.15 12.5 0.1 1.3 1 0 0 1 1 1 0 DNA replication factor Cdt1 C-terminal domain Rubredoxin PF00301.20 gi|304315476|ref|YP_003850623.1| - 1.4e-05 25.0 4.6 7e-05 22.8 0.1 2.4 1 1 1 2 2 2 1 Rubredoxin zf-RING_7 PF02591.15 gi|304315476|ref|YP_003850623.1| - 0.17 12.1 1.3 0.61 10.3 0.5 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf_UBZ PF18439.1 gi|304315476|ref|YP_003850623.1| - 0.42 10.3 1.6 20 4.9 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf_C2H2_10 PF18414.1 gi|304315476|ref|YP_003850623.1| - 5.2 6.7 6.5 3.1 7.4 0.1 3.0 3 0 0 3 3 3 0 C2H2 type zinc-finger Pyr_redox_2 PF07992.14 gi|304315478|ref|YP_003850625.1| - 3.3e-64 217.0 2.9 4.3e-64 216.6 2.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|304315478|ref|YP_003850625.1| - 5.3e-28 97.4 6.2 2.1e-20 73.1 0.7 3.4 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|304315478|ref|YP_003850625.1| - 1.6e-20 73.6 0.3 4.9e-15 55.6 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|304315478|ref|YP_003850625.1| - 1.4e-16 60.7 0.0 3.8e-16 59.3 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 gi|304315478|ref|YP_003850625.1| - 1e-11 45.1 8.9 0.03 13.9 0.2 4.2 4 0 0 4 4 4 4 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|304315478|ref|YP_003850625.1| - 4.6e-09 36.4 0.4 0.003 17.8 0.1 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|304315478|ref|YP_003850625.1| - 4.7e-09 35.5 2.2 0.039 12.7 0.0 4.8 4 1 1 5 5 5 2 HI0933-like protein K_oxygenase PF13434.6 gi|304315478|ref|YP_003850625.1| - 2.4e-08 33.5 0.1 2.6e-05 23.5 0.0 3.0 2 1 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|304315478|ref|YP_003850625.1| - 1.5e-07 31.8 2.4 0.0022 18.4 0.2 2.9 2 1 1 3 3 3 2 Putative NAD(P)-binding GIDA PF01134.22 gi|304315478|ref|YP_003850625.1| - 1.9e-05 24.0 5.2 0.23 10.5 0.4 4.0 3 1 1 4 4 4 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|304315478|ref|YP_003850625.1| - 1.9e-05 24.0 0.1 0.026 13.8 0.0 2.5 2 0 0 2 2 2 2 Thi4 family FAD_binding_2 PF00890.24 gi|304315478|ref|YP_003850625.1| - 1.9e-05 23.9 7.1 0.15 11.1 0.1 4.6 4 1 1 5 5 5 2 FAD binding domain Trp_halogenase PF04820.14 gi|304315478|ref|YP_003850625.1| - 3.3e-05 22.9 0.3 0.1 11.4 0.0 2.5 2 0 0 2 2 2 2 Tryptophan halogenase 3HCDH_N PF02737.18 gi|304315478|ref|YP_003850625.1| - 0.00014 21.8 0.2 0.00014 21.8 0.2 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|304315478|ref|YP_003850625.1| - 0.00056 19.9 7.0 2 8.4 0.0 4.2 3 1 1 4 4 4 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|304315478|ref|YP_003850625.1| - 0.003 16.8 1.8 0.91 8.7 0.1 2.4 2 1 0 2 2 2 2 FAD binding domain TrkA_N PF02254.18 gi|304315478|ref|YP_003850625.1| - 0.0034 17.6 0.6 3.6 7.9 0.1 2.9 2 1 0 2 2 2 2 TrkA-N domain Lycopene_cycl PF05834.12 gi|304315478|ref|YP_003850625.1| - 0.0054 15.8 5.7 3.2 6.7 0.0 3.4 2 1 1 3 3 3 2 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|304315478|ref|YP_003850625.1| - 0.027 13.8 9.1 0.16 11.3 0.2 3.7 3 1 0 4 4 4 0 FAD dependent oxidoreductase ApbA PF02558.16 gi|304315478|ref|YP_003850625.1| - 0.03 14.0 1.1 5 6.7 0.3 2.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|304315478|ref|YP_003850625.1| - 0.047 13.0 4.6 0.2 10.9 0.3 2.6 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|304315478|ref|YP_003850625.1| - 0.12 11.8 1.9 1.4 8.4 0.1 2.8 3 0 0 3 3 3 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 gi|304315478|ref|YP_003850625.1| - 0.16 11.3 0.2 0.71 9.2 0.1 2.1 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|304315478|ref|YP_003850625.1| - 0.25 11.4 1.1 2.2 8.3 0.1 2.8 3 0 0 3 3 2 0 Shikimate / quinate 5-dehydrogenase LMWPc PF01451.21 gi|304315479|ref|YP_003850626.1| - 1.9e-21 77.0 0.0 3.2e-21 76.2 0.0 1.3 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF166 PF02593.14 gi|304315480|ref|YP_003850627.1| - 1.3e-68 230.8 0.1 1.5e-68 230.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DrsE PF02635.15 gi|304315481|ref|YP_003850628.1| - 5.7e-26 91.2 0.0 6.4e-26 91.0 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.15 gi|304315482|ref|YP_003850629.1| - 7.2e-11 42.5 0.0 8.1e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.12 gi|304315482|ref|YP_003850629.1| - 0.0017 18.5 0.2 0.0036 17.4 0.2 1.7 1 1 0 1 1 1 1 DsrH like protein FeS PF04060.13 gi|304315483|ref|YP_003850630.1| - 9.8e-15 53.9 3.3 1.5e-14 53.3 3.3 1.3 1 0 0 1 1 1 1 Putative Fe-S cluster TBP PF00352.21 gi|304315483|ref|YP_003850630.1| - 0.15 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Transcription factor TFIID (or TATA-binding protein, TBP) Baculo_p48 PF04878.13 gi|304315483|ref|YP_003850630.1| - 0.16 10.9 0.0 0.27 10.1 0.0 1.4 1 1 1 2 2 2 0 Baculovirus P48 protein DsrH PF04077.12 gi|304315484|ref|YP_003850631.1| - 1.5e-18 66.6 0.0 1.8e-18 66.4 0.0 1.0 1 0 0 1 1 1 1 DsrH like protein FeoB_N PF02421.18 gi|304315485|ref|YP_003850632.1| - 3.4e-61 205.3 0.0 6.5e-61 204.4 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|304315485|ref|YP_003850632.1| - 3.6e-50 168.9 18.6 1e-34 119.1 6.4 2.6 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.12 gi|304315485|ref|YP_003850632.1| - 8.6e-19 67.0 1.4 8.6e-19 67.0 1.4 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.23 gi|304315485|ref|YP_003850632.1| - 1e-18 67.5 0.0 1.8e-18 66.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|304315485|ref|YP_003850632.1| - 3.4e-12 46.8 0.2 6.1e-12 45.9 0.2 1.4 1 0 0 1 1 1 1 FeoB cytosolic helical domain AIG1 PF04548.16 gi|304315485|ref|YP_003850632.1| - 0.0081 15.5 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|304315485|ref|YP_003850632.1| - 0.013 15.5 0.0 7 6.7 0.0 2.2 2 0 0 2 2 2 0 Dynamin family Asp4 PF16996.5 gi|304315485|ref|YP_003850632.1| - 0.054 13.3 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 Accessory secretory protein Sec Asp4 SRPRB PF09439.10 gi|304315485|ref|YP_003850632.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoA PF04023.14 gi|304315486|ref|YP_003850633.1| - 8.8e-16 57.9 1.0 9.6e-16 57.8 1.0 1.0 1 0 0 1 1 1 1 FeoA domain Glyco_hydro_65C PF03633.15 gi|304315486|ref|YP_003850633.1| - 0.051 13.5 0.6 0.11 12.4 0.0 2.0 2 1 1 3 3 3 0 Glycosyl hydrolase family 65, C-terminal domain CobN-Mg_chel PF02514.16 gi|304315487|ref|YP_003850634.1| - 0 1099.9 0.0 6.3e-170 567.3 0.0 2.0 1 1 1 2 2 2 2 CobN/Magnesium Chelatase DUF3479 PF11965.8 gi|304315487|ref|YP_003850634.1| - 0.16 12.1 0.0 0.46 10.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3479) zf-ribbon_3 PF13248.6 gi|304315488|ref|YP_003850635.1| - 0.0012 18.1 0.4 0.0023 17.3 0.4 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Peptidase_M50 PF02163.22 gi|304315489|ref|YP_003850636.1| - 7.3e-26 91.0 0.1 4e-24 85.2 0.1 2.3 1 1 0 1 1 1 1 Peptidase family M50 PDZ PF00595.24 gi|304315489|ref|YP_003850636.1| - 7.6e-05 23.0 0.0 0.00017 21.9 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|304315489|ref|YP_003850636.1| - 9.6e-05 22.2 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|304315489|ref|YP_003850636.1| - 0.011 16.1 0.0 0.023 15.0 0.0 1.5 1 0 0 1 1 1 0 PDZ domain PDZ_1 PF12812.7 gi|304315489|ref|YP_003850636.1| - 0.019 15.0 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 PDZ-like domain PDR_CDR PF06422.12 gi|304315489|ref|YP_003850636.1| - 1.7 8.6 7.8 0.15 12.0 0.6 2.8 3 0 0 3 3 3 0 CDR ABC transporter MoeA_N PF03453.17 gi|304315490|ref|YP_003850637.1| - 1.4e-46 158.1 1.9 3e-46 157.1 0.4 1.9 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|304315490|ref|YP_003850637.1| - 2.5e-25 88.8 0.1 3.9e-25 88.2 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|304315490|ref|YP_003850637.1| - 2.3e-19 69.3 0.0 8.1e-19 67.6 0.0 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) ABC_tran PF00005.27 gi|304315491|ref|YP_003850638.1| - 8.5e-32 110.5 0.0 1.2e-31 110.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|304315491|ref|YP_003850638.1| - 2.9e-12 47.0 0.4 1.5e-06 28.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|304315491|ref|YP_003850638.1| - 4.9e-08 33.6 0.2 8e-08 32.9 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|304315491|ref|YP_003850638.1| - 0.00059 20.4 0.0 0.00099 19.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|304315491|ref|YP_003850638.1| - 0.0074 16.0 0.0 0.071 12.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|304315491|ref|YP_003850638.1| - 0.019 15.4 0.0 0.03 14.7 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|304315491|ref|YP_003850638.1| - 0.021 14.2 0.1 5.2 6.4 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|304315491|ref|YP_003850638.1| - 0.026 14.3 0.1 0.049 13.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|304315491|ref|YP_003850638.1| - 0.042 12.5 0.0 3.7 6.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|304315491|ref|YP_003850638.1| - 0.054 13.1 0.0 0.076 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|304315491|ref|YP_003850638.1| - 0.062 13.0 0.1 0.13 11.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|304315491|ref|YP_003850638.1| - 0.066 12.1 0.0 4.9 6.0 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.29 gi|304315491|ref|YP_003850638.1| - 0.12 12.7 0.0 0.65 10.4 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane_2 PF12679.7 gi|304315492|ref|YP_003850639.1| - 2.1e-18 66.6 6.9 7.1e-18 64.9 6.9 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|304315492|ref|YP_003850639.1| - 1.9e-15 56.8 10.8 1.9e-15 56.8 10.8 2.0 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|304315492|ref|YP_003850639.1| - 5.3e-09 35.8 4.9 5.3e-09 35.8 4.9 2.9 2 1 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|304315492|ref|YP_003850639.1| - 0.00015 21.4 14.0 0.00015 21.4 14.0 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|304315492|ref|YP_003850639.1| - 0.0026 17.7 7.3 0.0026 17.7 7.3 2.7 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|304315493|ref|YP_003850640.1| - 5.5e-24 84.9 16.5 7.9e-24 84.4 16.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|304315493|ref|YP_003850640.1| - 9.8e-14 51.3 16.7 2e-13 50.3 16.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|304315493|ref|YP_003850640.1| - 8.3e-12 45.0 26.8 3.4e-11 43.0 22.2 2.7 2 1 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|304315493|ref|YP_003850640.1| - 0.00018 21.5 15.5 0.00018 21.5 15.5 2.7 2 1 1 3 3 3 1 ABC-2 family transporter protein Keratin_assoc PF09775.9 gi|304315494|ref|YP_003850641.1| - 0.067 12.8 1.2 3 7.5 0.1 2.4 2 0 0 2 2 2 0 Keratinocyte-associated protein 2 AIRS_C PF02769.22 gi|304315495|ref|YP_003850642.1| - 1.1e-56 191.4 3.1 2.7e-35 121.8 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|304315495|ref|YP_003850642.1| - 4.4e-48 161.9 1.4 9.7e-23 80.6 0.2 2.6 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|304315495|ref|YP_003850642.1| - 7.6e-10 39.2 0.0 1.5e-09 38.2 0.0 1.5 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain Tegument_dsDNA PF12818.7 gi|304315495|ref|YP_003850642.1| - 0.029 13.5 0.0 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 dsDNA viral tegument protein tRNA-synt_1 PF00133.22 gi|304315496|ref|YP_003850643.1| - 2.1e-208 693.5 0.0 3.4e-208 692.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|304315496|ref|YP_003850643.1| - 8.9e-32 110.2 0.1 2.2e-31 108.9 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|304315496|ref|YP_003850643.1| - 3e-25 88.8 2.9 1.2e-11 44.0 0.2 3.4 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|304315496|ref|YP_003850643.1| - 9e-07 28.5 0.0 3.4e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|304315496|ref|YP_003850643.1| - 1.2e-05 24.4 0.0 6.2e-05 22.1 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|304315496|ref|YP_003850643.1| - 4.3e-05 23.1 0.0 9.5e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 AdoMet_Synthase PF01941.19 gi|304315497|ref|YP_003850644.1| - 7.4e-179 594.6 2.7 8.3e-179 594.5 2.7 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF192 PF02643.15 gi|304315498|ref|YP_003850645.1| - 1.6e-20 73.1 0.0 2e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HEAT_2 PF13646.6 gi|304315499|ref|YP_003850646.1| - 1.3e-29 102.4 9.1 4.4e-17 62.2 2.9 2.0 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|304315499|ref|YP_003850646.1| - 1.3e-19 68.8 5.9 1.6e-05 25.1 0.1 3.4 3 0 0 3 3 3 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|304315499|ref|YP_003850646.1| - 6.4e-19 66.4 0.8 0.00012 22.0 0.0 4.1 4 0 0 4 4 4 4 HEAT repeat Cnd1 PF12717.7 gi|304315499|ref|YP_003850646.1| - 1.4e-12 47.9 0.0 4.8e-07 30.0 0.0 3.2 1 1 2 3 3 3 2 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|304315499|ref|YP_003850646.1| - 2.9e-09 36.6 0.0 0.0026 17.8 0.0 3.8 3 1 1 4 4 4 2 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.6 gi|304315499|ref|YP_003850646.1| - 5.9e-07 29.8 5.5 0.0025 18.3 0.8 3.2 3 0 0 3 3 3 2 HEAT-like repeat Adaptin_N PF01602.20 gi|304315499|ref|YP_003850646.1| - 0.0003 19.5 0.0 0.011 14.4 0.0 2.1 1 1 0 1 1 1 1 Adaptin N terminal region Aconitase_B_N PF11791.8 gi|304315499|ref|YP_003850646.1| - 0.0011 19.0 0.0 0.0022 18.1 0.0 1.4 1 1 0 1 1 1 1 Aconitate B N-terminal domain Cohesin_HEAT PF12765.7 gi|304315499|ref|YP_003850646.1| - 0.0039 17.5 0.4 14 6.1 0.0 4.1 4 0 0 4 4 4 1 HEAT repeat associated with sister chromatid cohesion IFRD PF05004.13 gi|304315499|ref|YP_003850646.1| - 0.011 14.9 0.3 0.066 12.3 0.3 1.9 1 1 0 1 1 1 0 Interferon-related developmental regulator (IFRD) TetR_C_16 PF17920.1 gi|304315499|ref|YP_003850646.1| - 0.095 12.9 1.6 5 7.4 0.5 2.4 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain RasGEF_N_2 PF14663.6 gi|304315499|ref|YP_003850646.1| - 0.18 12.2 0.2 24 5.4 0.0 2.6 2 1 1 3 3 3 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Flavoprotein PF02441.19 gi|304315500|ref|YP_003850647.1| - 2.1e-16 60.0 0.0 3.8e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.27 gi|304315500|ref|YP_003850647.1| - 3.1e-06 26.8 1.1 3.1e-06 26.8 1.1 3.2 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304315500|ref|YP_003850647.1| - 1.1e-05 25.2 10.3 0.00031 20.6 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|304315500|ref|YP_003850647.1| - 1.7e-05 25.7 5.9 0.0027 18.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|304315500|ref|YP_003850647.1| - 3.8e-05 24.1 2.6 0.0018 18.7 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|304315500|ref|YP_003850647.1| - 8e-05 22.7 10.5 0.00091 19.3 0.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304315500|ref|YP_003850647.1| - 0.00018 22.0 4.1 0.02 15.4 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304315500|ref|YP_003850647.1| - 0.00025 21.2 11.0 0.013 15.7 1.8 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304315500|ref|YP_003850647.1| - 0.00026 20.9 11.9 0.00064 19.7 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|304315500|ref|YP_003850647.1| - 0.00027 21.4 23.4 0.0012 19.4 2.5 2.3 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304315500|ref|YP_003850647.1| - 0.00067 20.0 11.7 0.0081 16.6 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|304315500|ref|YP_003850647.1| - 0.035 15.0 5.5 0.035 15.0 5.5 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304315500|ref|YP_003850647.1| - 0.15 12.2 11.0 0.84 9.8 11.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|304315500|ref|YP_003850647.1| - 3 8.6 13.4 5 7.9 0.2 3.4 2 1 1 3 3 3 0 4Fe-4S single cluster domain SHMT PF00464.19 gi|304315501|ref|YP_003850648.1| - 4.3e-83 279.1 0.0 5.7e-83 278.7 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|304315501|ref|YP_003850648.1| - 7.7e-12 45.1 0.0 1.8e-11 43.8 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II SelA PF03841.13 gi|304315501|ref|YP_003850648.1| - 0.0005 19.2 0.0 0.00083 18.4 0.0 1.4 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.19 gi|304315501|ref|YP_003850648.1| - 0.00058 18.9 0.0 0.00085 18.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|304315501|ref|YP_003850648.1| - 0.0015 17.9 0.0 0.0022 17.4 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Pyr_redox_2 PF07992.14 gi|304315502|ref|YP_003850649.1| - 1.9e-24 86.4 0.1 1.8e-23 83.2 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|304315502|ref|YP_003850649.1| - 9.9e-23 79.0 39.4 1.1e-07 31.3 4.0 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|304315502|ref|YP_003850649.1| - 1.6e-15 56.9 27.3 1.7e-08 34.4 7.2 4.3 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|304315502|ref|YP_003850649.1| - 1.4e-14 54.8 18.6 0.00079 20.3 1.1 4.9 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|304315502|ref|YP_003850649.1| - 3.2e-13 50.0 34.2 6e-06 26.7 11.5 5.0 3 2 4 7 7 7 6 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|304315502|ref|YP_003850649.1| - 6.6e-12 45.4 35.9 3.5e-07 30.3 10.0 4.1 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|304315502|ref|YP_003850649.1| - 1.2e-09 37.8 51.8 3e-05 23.9 2.3 5.4 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|304315502|ref|YP_003850649.1| - 9.1e-09 34.9 45.7 1.4e-05 24.9 2.6 5.2 6 0 0 6 6 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|304315502|ref|YP_003850649.1| - 1.2e-08 34.9 44.2 0.0013 18.8 11.9 5.1 4 2 2 6 6 6 5 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|304315502|ref|YP_003850649.1| - 1.1e-07 32.3 27.1 0.0096 16.4 0.8 5.1 5 0 0 5 5 5 4 4Fe-4S dicluster domain AlaDh_PNT_C PF01262.21 gi|304315502|ref|YP_003850649.1| - 2.6e-07 30.2 0.0 3.1e-06 26.7 0.0 2.5 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|304315502|ref|YP_003850649.1| - 5.1e-06 27.0 0.6 0.00096 19.7 0.4 3.7 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_8 PF13183.6 gi|304315502|ref|YP_003850649.1| - 1.6e-05 25.2 29.7 0.009 16.4 0.8 4.8 4 1 2 6 6 5 4 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|304315502|ref|YP_003850649.1| - 2.1e-05 23.8 0.0 3.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|304315502|ref|YP_003850649.1| - 3.3e-05 23.2 0.0 5e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Fer4_15 PF13459.6 gi|304315502|ref|YP_003850649.1| - 4e-05 24.3 26.8 0.0041 17.8 0.3 4.7 3 1 1 4 4 4 1 4Fe-4S single cluster domain FAD_oxidored PF12831.7 gi|304315502|ref|YP_003850649.1| - 5e-05 22.8 0.3 0.0001 21.8 0.3 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_13 PF13370.6 gi|304315502|ref|YP_003850649.1| - 5.3e-05 23.7 28.4 0.036 14.6 1.1 4.8 4 0 0 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|304315502|ref|YP_003850649.1| - 0.00013 22.7 20.7 0.014 16.3 0.1 4.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|304315502|ref|YP_003850649.1| - 0.00029 21.1 40.7 0.0028 18.0 0.9 5.2 5 0 0 5 5 4 2 4Fe-4S binding domain NAD_binding_8 PF13450.6 gi|304315502|ref|YP_003850649.1| - 0.00037 20.7 0.0 0.00081 19.6 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|304315502|ref|YP_003850649.1| - 0.00069 19.3 0.1 0.012 15.2 0.1 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|304315502|ref|YP_003850649.1| - 0.00097 18.5 0.2 0.0088 15.3 0.1 2.4 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|304315502|ref|YP_003850649.1| - 0.011 15.0 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain DUF4033 PF13225.6 gi|304315502|ref|YP_003850649.1| - 0.022 14.8 0.0 0.022 14.8 0.0 2.4 2 1 1 3 3 1 0 Domain of unknown function (DUF4033) Fer4_3 PF12798.7 gi|304315502|ref|YP_003850649.1| - 0.033 15.1 5.4 0.033 15.1 5.4 6.2 7 0 0 7 7 5 0 4Fe-4S binding domain HI0933_like PF03486.14 gi|304315502|ref|YP_003850649.1| - 0.037 12.7 0.4 0.068 11.9 0.3 1.5 2 0 0 2 2 2 0 HI0933-like protein Fer4_18 PF13746.6 gi|304315502|ref|YP_003850649.1| - 0.08 13.1 28.5 0.079 13.2 5.9 4.5 3 1 1 4 4 4 0 4Fe-4S dicluster domain Thi4 PF01946.17 gi|304315502|ref|YP_003850649.1| - 0.1 11.8 0.0 0.23 10.7 0.0 1.5 1 0 0 1 1 1 0 Thi4 family Mem_trans PF03547.18 gi|304315503|ref|YP_003850650.1| - 3e-32 111.5 19.4 1.6e-17 63.0 11.6 2.0 1 1 1 2 2 2 2 Membrane transport protein Rad51 PF08423.11 gi|304315504|ref|YP_003850651.1| - 3.4e-93 311.6 0.1 4e-93 311.4 0.1 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|304315504|ref|YP_003850651.1| - 2.5e-14 53.4 0.1 3.7e-14 52.8 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|304315504|ref|YP_003850651.1| - 6.1e-11 42.1 0.2 9.8e-11 41.4 0.2 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|304315504|ref|YP_003850651.1| - 2.3e-08 33.9 0.1 4.1e-08 33.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain HHH_5 PF14520.6 gi|304315504|ref|YP_003850651.1| - 4.2e-07 30.5 0.6 1.3e-06 28.9 0.6 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|304315504|ref|YP_003850651.1| - 6.8e-07 29.3 2.6 1.3e-06 28.4 0.2 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix motif AAA_22 PF13401.6 gi|304315504|ref|YP_003850651.1| - 1.1e-05 25.7 0.2 2e-05 24.9 0.2 1.3 1 0 0 1 1 1 1 AAA domain Cdd1 PF11731.8 gi|304315504|ref|YP_003850651.1| - 0.00025 21.2 0.0 0.00053 20.2 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus AAA_24 PF13479.6 gi|304315504|ref|YP_003850651.1| - 0.0012 18.6 0.0 0.0038 17.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain TfoX_C PF04994.13 gi|304315504|ref|YP_003850651.1| - 0.0048 17.0 0.2 0.11 12.6 0.0 2.5 2 0 0 2 2 2 1 TfoX C-terminal domain CobU PF02283.16 gi|304315504|ref|YP_003850651.1| - 0.0076 15.8 2.5 0.034 13.7 1.3 2.3 2 1 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_18 PF13238.6 gi|304315504|ref|YP_003850651.1| - 0.0077 16.8 0.0 0.015 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain HHH PF00633.23 gi|304315504|ref|YP_003850651.1| - 0.042 13.7 0.6 0.83 9.6 0.0 2.9 2 1 0 2 2 2 0 Helix-hairpin-helix motif PAXNEB PF05625.11 gi|304315504|ref|YP_003850651.1| - 0.043 13.0 0.7 2.4 7.2 0.1 2.1 2 0 0 2 2 2 0 PAXNEB protein HHH_8 PF14716.6 gi|304315504|ref|YP_003850651.1| - 0.059 13.7 0.1 3.4 8.1 0.0 3.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain IMS_HHH PF11798.8 gi|304315504|ref|YP_003850651.1| - 0.077 13.4 0.0 0.29 11.5 0.0 2.1 1 0 0 1 1 1 0 IMS family HHH motif tRNA_anti-codon PF01336.25 gi|304315505|ref|YP_003850652.1| - 4.3e-43 145.2 16.3 2.4e-09 37.0 0.1 6.3 6 0 0 6 6 6 5 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|304315505|ref|YP_003850652.1| - 5.3e-25 88.4 0.0 0.00028 20.6 0.0 5.4 5 1 0 5 5 5 5 Cell division control protein 24, OB domain 3 Rep_fac-A_C PF08646.10 gi|304315505|ref|YP_003850652.1| - 2.5e-17 63.0 0.5 9.3e-11 41.7 0.0 5.7 7 0 0 7 7 7 2 Replication factor-A C terminal domain POT1PC PF16686.5 gi|304315505|ref|YP_003850652.1| - 6.3e-06 26.1 0.0 6.1 6.7 0.0 4.7 5 0 0 5 5 5 2 ssDNA-binding domain of telomere protection protein DUF5088 PF17008.5 gi|304315505|ref|YP_003850652.1| - 0.0011 18.7 0.0 0.19 11.5 0.0 3.6 4 0 0 4 4 4 1 Domain of unknown function (DUF5088) DUF961 PF06125.11 gi|304315505|ref|YP_003850652.1| - 0.017 15.5 0.0 4.2 7.8 0.0 3.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF961) zf-ribbon_3 PF13248.6 gi|304315505|ref|YP_003850652.1| - 0.02 14.3 0.7 0.04 13.3 0.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|304315505|ref|YP_003850652.1| - 0.077 12.7 1.7 0.14 11.9 1.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Ribosomal_S17 PF00366.20 gi|304315505|ref|YP_003850652.1| - 0.14 12.3 1.4 51 4.1 0.0 4.4 5 0 0 5 5 5 0 Ribosomal protein S17 TF_Zn_Ribbon PF08271.12 gi|304315505|ref|YP_003850652.1| - 0.14 11.7 2.0 0.37 10.3 2.0 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding HIN PF02760.15 gi|304315505|ref|YP_003850652.1| - 0.14 11.8 0.0 8.3 6.1 0.0 3.0 3 0 0 3 3 3 0 HIN-200/IF120x domain Molydop_binding PF01568.21 gi|304315505|ref|YP_003850652.1| - 0.46 10.5 3.3 17 5.5 0.0 3.8 4 0 0 4 4 4 0 Molydopterin dinucleotide binding domain Aconitase PF00330.20 gi|304315506|ref|YP_003850653.1| - 4.4e-98 329.3 3.9 8.5e-96 321.7 3.9 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|304315506|ref|YP_003850653.1| - 0.0029 16.4 0.0 0.0047 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.19 gi|304315507|ref|YP_003850654.1| - 2.3e-21 76.5 0.0 3.1e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|304315507|ref|YP_003850654.1| - 0.074 12.7 0.1 0.35 10.5 0.1 2.1 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus Iso_dh PF00180.20 gi|304315508|ref|YP_003850655.1| - 2.6e-104 349.1 0.0 2.9e-104 348.9 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Antirestrict PF03230.13 gi|304315508|ref|YP_003850655.1| - 0.079 13.0 0.1 0.32 11.0 0.0 1.9 2 0 0 2 2 2 0 Antirestriction protein Aminotran_5 PF00266.19 gi|304315509|ref|YP_003850656.1| - 1.8e-128 428.7 0.0 2e-128 428.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|304315509|ref|YP_003850656.1| - 1.2e-11 44.4 0.0 8.6e-10 38.3 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|304315509|ref|YP_003850656.1| - 1.8e-09 37.4 0.2 3.3e-09 36.5 0.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|304315509|ref|YP_003850656.1| - 1.9e-07 30.6 0.1 1.9e-06 27.4 0.2 2.0 1 1 1 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|304315509|ref|YP_003850656.1| - 2.7e-05 22.9 0.0 4.8e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DMRL_synthase PF00885.19 gi|304315510|ref|YP_003850657.1| - 6.9e-34 116.7 0.3 7.6e-34 116.5 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF1743 PF08489.11 gi|304315511|ref|YP_003850658.1| - 1.3e-09 38.1 0.1 1.3e-06 28.5 0.0 3.4 2 1 0 2 2 2 1 Domain of unknown function (DUF1743) Glycos_transf_2 PF00535.26 gi|304315512|ref|YP_003850659.1| - 1.1e-29 103.4 0.0 2e-29 102.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|304315512|ref|YP_003850659.1| - 1.9e-09 37.7 0.6 3.5e-09 36.9 0.6 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|304315512|ref|YP_003850659.1| - 3.3e-06 26.8 0.0 5.3e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 CDC48_N PF02359.18 gi|304315512|ref|YP_003850659.1| - 5.4e-05 23.3 0.3 0.00066 19.8 0.0 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Glyco_tranf_2_4 PF13704.6 gi|304315512|ref|YP_003850659.1| - 0.0043 17.6 0.0 0.009 16.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF374 PF04028.13 gi|304315512|ref|YP_003850659.1| - 0.034 13.7 0.2 0.1 12.2 0.2 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF374) FliMN_C PF01052.20 gi|304315512|ref|YP_003850659.1| - 0.07 13.1 0.1 0.75 9.8 0.0 2.4 2 0 0 2 2 2 0 Type III flagellar switch regulator (C-ring) FliN C-term Herpes_glycoH_C PF17488.2 gi|304315512|ref|YP_003850659.1| - 0.1 12.4 1.2 0.14 12.0 0.2 1.7 2 0 0 2 2 2 0 Herpesvirus glycoprotein H C-terminal domain Corona_M PF01635.18 gi|304315512|ref|YP_003850659.1| - 0.22 10.8 1.9 0.18 11.1 0.2 1.6 2 0 0 2 2 2 0 Coronavirus M matrix/glycoprotein AIRC PF00731.20 gi|304315513|ref|YP_003850660.1| - 6.4e-96 317.8 0.2 6.6e-50 168.5 0.0 2.0 2 0 0 2 2 2 2 AIR carboxylase PG_isomerase_N PF18353.1 gi|304315513|ref|YP_003850660.1| - 0.12 12.8 0.2 13 6.2 0.0 2.5 2 0 0 2 2 2 0 Phosphoglucose isomerase N-terminal domain UbiD PF01977.16 gi|304315514|ref|YP_003850661.1| - 6.7e-107 357.8 1.0 8.4e-107 357.5 1.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Radical_SAM PF04055.21 gi|304315515|ref|YP_003850662.1| - 7.5e-21 75.2 0.0 2e-19 70.6 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|304315515|ref|YP_003850662.1| - 0.00042 20.6 0.0 0.0007 19.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.7 gi|304315515|ref|YP_003850662.1| - 0.21 11.7 0.1 0.21 11.7 0.1 2.7 3 0 0 3 3 3 0 Double zinc ribbon Ribosomal_S27e PF01667.17 gi|304315515|ref|YP_003850662.1| - 0.25 11.1 0.0 0.25 11.1 0.0 2.2 4 0 0 4 4 4 0 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|304315515|ref|YP_003850662.1| - 0.33 10.4 0.1 0.33 10.4 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain C1_1 PF00130.22 gi|304315515|ref|YP_003850662.1| - 6.9 6.6 8.1 2.6 8.0 0.0 2.9 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) AIRS PF00586.24 gi|304315516|ref|YP_003850663.1| - 5.4e-20 71.8 0.1 1.1e-19 70.9 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|304315516|ref|YP_003850663.1| - 5.9e-18 65.5 0.3 8.4e-18 65.0 0.3 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain CbiX PF01903.17 gi|304315517|ref|YP_003850664.1| - 1.2e-32 112.4 0.7 1.5e-32 112.1 0.7 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|304315517|ref|YP_003850664.1| - 3.4e-07 29.9 0.2 3.8e-07 29.7 0.2 1.1 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|304315517|ref|YP_003850664.1| - 0.00018 20.7 0.0 0.0013 17.8 0.0 2.0 2 0 0 2 2 2 1 Ferrochelatase OB_aCoA_assoc PF01796.17 gi|304315518|ref|YP_003850665.1| - 4.5e-21 74.6 0.0 6.3e-21 74.1 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|304315518|ref|YP_003850665.1| - 1.7e-09 37.3 0.8 2.4e-09 36.9 0.8 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|304315518|ref|YP_003850665.1| - 0.0037 17.2 2.2 0.1 12.5 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|304315518|ref|YP_003850665.1| - 0.031 14.1 0.4 3 7.8 0.0 2.7 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS Auto_anti-p27 PF06677.12 gi|304315518|ref|YP_003850665.1| - 0.057 13.6 0.4 0.11 12.6 0.4 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_5 PF13719.6 gi|304315518|ref|YP_003850665.1| - 0.092 12.5 2.3 2 8.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain MgtE PF01769.16 gi|304315522|ref|YP_003850669.1| - 3.3e-31 108.2 16.5 1.1e-18 67.7 4.1 3.9 3 1 1 4 4 4 2 Divalent cation transporter COX8 PF02285.15 gi|304315522|ref|YP_003850669.1| - 1.2 9.0 6.6 0.24 11.3 0.6 2.9 3 0 0 3 3 3 0 Cytochrome oxidase c subunit VIII TrkA_C PF02080.21 gi|304315523|ref|YP_003850670.1| - 1.3e-15 56.9 0.1 2.9e-15 55.9 0.1 1.7 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.19 gi|304315523|ref|YP_003850670.1| - 9.2e-12 45.3 5.7 1.6e-11 44.5 5.7 1.4 1 0 0 1 1 1 1 PhoU domain TP_methylase PF00590.20 gi|304315524|ref|YP_003850671.1| - 7.9e-33 114.2 0.2 1.4e-32 113.4 0.1 1.4 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases zf-like PF04071.12 gi|304315524|ref|YP_003850671.1| - 2e-23 82.1 6.9 3.1e-23 81.5 6.9 1.3 1 0 0 1 1 1 1 Cysteine-rich small domain SsgA PF04686.12 gi|304315525|ref|YP_003850672.1| - 0.13 12.2 0.0 14 5.8 0.0 2.2 2 0 0 2 2 2 0 Streptomyces sporulation and cell division protein, SsgA Metallophos PF00149.28 gi|304315526|ref|YP_003850673.1| - 8e-16 59.1 0.3 1.3e-15 58.4 0.3 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DNA_pol_E_B PF04042.16 gi|304315526|ref|YP_003850673.1| - 1.1e-15 57.5 0.0 1.7e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|304315526|ref|YP_003850673.1| - 5.9e-08 33.1 0.8 1.4e-07 31.9 0.4 1.8 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|304315526|ref|YP_003850673.1| - 1.5e-05 24.9 0.1 3.7e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4539 PF15072.6 gi|304315526|ref|YP_003850673.1| - 0.0015 18.5 0.2 0.0033 17.4 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4539) CDC24_OB3 PF17244.2 gi|304315526|ref|YP_003850673.1| - 0.17 11.6 0.1 0.27 10.9 0.1 1.3 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 3 Aldolase_II PF00596.21 gi|304315527|ref|YP_003850674.1| - 4.6e-47 160.4 0.0 5.1e-47 160.2 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain UPF0147 PF03685.13 gi|304315528|ref|YP_003850675.1| - 1.1e-35 121.5 3.2 1.3e-35 121.3 3.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) CbiG_N PF11760.8 gi|304315529|ref|YP_003850676.1| - 2.8e-34 117.0 0.1 5.5e-34 116.0 0.1 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|304315529|ref|YP_003850676.1| - 1.6e-27 96.3 0.1 3.3e-27 95.4 0.1 1.5 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus CobD_Cbib PF03186.13 gi|304315530|ref|YP_003850677.1| - 2.8e-92 308.9 0.5 3.4e-92 308.6 0.5 1.0 1 0 0 1 1 1 1 CobD/Cbib protein Sdh_cyt PF01127.22 gi|304315530|ref|YP_003850677.1| - 0.62 10.1 5.0 11 6.1 0.0 3.5 3 1 0 3 3 3 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2299 PF10061.9 gi|304315531|ref|YP_003850678.1| - 8.6e-47 158.4 0.1 9.8e-47 158.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanothermobacter_marburgensis_Marburg_uid51637/NC_014408.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanothermobacter_marburgensis_Marburg_uid51637/NC_014408.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanothermobacter_marburgensis_Marburg_uid51637/NC_014408.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanothermobacter_marburgensis_Marburg_uid51637/NC_014408.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:03:41 2019 # [ok]