# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Transposase_20 PF02371.11 gi|73663827|ref|YP_300073.1| - 0.00091 19.2 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DUF1699 PF08004.6 gi|73663828|ref|YP_300074.1| - 3.5e-68 227.1 2.8 3.9e-68 226.9 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) LKAAEAR PF15478.1 gi|73663828|ref|YP_300074.1| - 0.047 13.9 0.0 0.1 12.8 0.0 1.5 2 0 0 2 2 2 0 Family of unknown function with LKAAEAR motif Img2 PF05046.9 gi|73663828|ref|YP_300074.1| - 0.13 12.4 0.1 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) OrfB_IS605 PF01385.14 gi|73663829|ref|YP_300075.1| - 2.5e-40 138.2 4.2 2.5e-40 138.2 2.9 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|73663829|ref|YP_300075.1| - 6e-23 80.2 1.6 6.5e-23 80.1 0.3 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-piccolo PF05715.8 gi|73663829|ref|YP_300075.1| - 0.0091 15.9 0.9 0.019 14.9 0.6 1.4 1 0 0 1 1 1 1 Piccolo Zn-finger zf-ribbon_3 PF13248.1 gi|73663829|ref|YP_300075.1| - 0.069 12.3 2.0 6.5 6.1 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|73663829|ref|YP_300075.1| - 0.081 12.7 0.5 0.17 11.7 0.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|73663829|ref|YP_300075.1| - 0.093 12.4 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RanBP PF00641.13 gi|73663829|ref|YP_300075.1| - 1.6 7.8 7.9 5.6 6.1 0.2 2.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Rubredoxin PF00301.15 gi|73663829|ref|YP_300075.1| - 4.6 7.1 8.8 1.4e+02 2.4 6.1 2.5 1 1 0 1 1 1 0 Rubredoxin Polysacc_synt PF01943.12 gi|73663830|ref|YP_300076.1| - 3.7e-13 49.3 38.4 3.7e-13 49.3 26.6 2.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|73663830|ref|YP_300076.1| - 1.6e-08 34.3 30.8 1.6e-08 34.3 21.4 3.1 2 2 1 3 3 3 2 Polysaccharide biosynthesis protein DUF354 PF04007.7 gi|73663831|ref|YP_300077.1| - 1.1e-17 63.8 0.2 1.3e-17 63.6 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Hydrolase_3 PF08282.7 gi|73663831|ref|YP_300077.1| - 0.083 12.4 0.4 0.16 11.4 0.3 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Glycos_transf_1 PF00534.15 gi|73663833|ref|YP_300079.1| - 1.3e-31 109.3 0.0 4.1e-31 107.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|73663833|ref|YP_300079.1| - 1.3e-14 54.4 0.0 2.3e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|73663833|ref|YP_300079.1| - 3.4e-10 39.9 0.1 4.8e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|73663833|ref|YP_300079.1| - 1.3e-06 28.5 0.0 6.2e-06 26.4 0.0 2.2 3 0 0 3 3 3 1 Glycosyl transferases group 1 CbiA PF01656.18 gi|73663834|ref|YP_300080.1| - 4.4e-33 114.3 0.2 5.6e-33 113.9 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|73663834|ref|YP_300080.1| - 2.4e-11 43.8 0.0 4.2e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|73663834|ref|YP_300080.1| - 7.5e-11 41.7 0.1 1.7e-07 30.7 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|73663834|ref|YP_300080.1| - 3.1e-09 36.2 0.2 9.4e-08 31.4 0.1 2.1 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|73663834|ref|YP_300080.1| - 8.1e-08 31.6 0.5 1.1e-05 24.7 0.2 2.3 2 0 0 2 2 2 2 Anion-transporting ATPase YhjQ PF06564.7 gi|73663834|ref|YP_300080.1| - 1.8e-05 24.2 0.1 4.4e-05 22.9 0.1 1.9 1 1 0 1 1 1 1 YhjQ protein SRP54 PF00448.17 gi|73663834|ref|YP_300080.1| - 0.00047 19.6 0.1 0.07 12.5 0.1 2.3 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain VirC1 PF07015.6 gi|73663834|ref|YP_300080.1| - 0.00064 18.8 0.1 0.0023 17.0 0.0 1.8 2 0 0 2 2 2 1 VirC1 protein AAA_19 PF13245.1 gi|73663834|ref|YP_300080.1| - 0.038 13.7 0.1 0.078 12.7 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain OrfB_IS605 PF01385.14 gi|73663836|ref|YP_300082.1| - 2.1e-45 154.9 3.8 2.1e-45 154.9 2.6 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|73663836|ref|YP_300082.1| - 1.3e-21 75.9 0.2 2.5e-21 75.1 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|73663836|ref|YP_300082.1| - 3.9e-21 74.1 0.4 7.1e-21 73.2 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.8 gi|73663836|ref|YP_300082.1| - 0.013 15.4 0.5 0.027 14.4 0.4 1.4 1 0 0 1 1 1 0 Piccolo Zn-finger HypA PF01155.14 gi|73663836|ref|YP_300082.1| - 0.048 13.3 0.0 0.085 12.5 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|73663836|ref|YP_300082.1| - 0.13 12.0 0.4 0.27 11.0 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|73663836|ref|YP_300082.1| - 4.3 7.3 7.8 81 3.2 5.4 2.5 1 1 0 1 1 1 0 Rubredoxin zf-RanBP PF00641.13 gi|73663836|ref|YP_300082.1| - 5.7 6.1 8.4 14 4.9 0.3 2.6 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Glycos_transf_2 PF00535.21 gi|73663837|ref|YP_300083.1| - 8.6e-22 77.5 0.1 1.4e-21 76.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|73663837|ref|YP_300083.1| - 8.3e-07 29.0 0.0 1e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|73663837|ref|YP_300083.1| - 0.001 19.3 0.0 0.0017 18.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 SdpI PF13630.1 gi|73663837|ref|YP_300083.1| - 1.2 8.8 7.8 0.77 9.5 3.8 1.8 2 0 0 2 2 2 0 SdpI/YhfL protein family Laminin_G_3 PF13385.1 gi|73663838|ref|YP_300084.1| - 1e-29 103.8 15.6 1.8e-16 60.7 2.9 7.7 7 3 1 8 8 8 2 Concanavalin A-like lectin/glucanases superfamily PKD PF00801.15 gi|73663838|ref|YP_300084.1| - 2.1e-22 78.6 16.7 5.9e-15 54.7 4.4 6.2 7 0 0 7 7 7 2 PKD domain OrfB_IS605 PF01385.14 gi|73663839|ref|YP_300085.1| - 4.6e-45 153.7 3.5 4.6e-45 153.7 2.4 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|73663839|ref|YP_300085.1| - 1e-22 79.5 0.4 1e-22 79.5 0.3 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|73663839|ref|YP_300085.1| - 7e-21 73.2 0.6 7e-21 73.2 0.4 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain zf-piccolo PF05715.8 gi|73663839|ref|YP_300085.1| - 0.0097 15.8 0.9 0.027 14.4 0.6 1.7 1 0 0 1 1 1 1 Piccolo Zn-finger DZR PF12773.2 gi|73663839|ref|YP_300085.1| - 0.12 12.2 0.5 0.25 11.1 0.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|73663839|ref|YP_300085.1| - 0.13 11.5 2.0 8.9 5.6 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|73663839|ref|YP_300085.1| - 2.8 7.1 7.8 7.5 5.7 0.2 2.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Rubredoxin PF00301.15 gi|73663839|ref|YP_300085.1| - 7.1 6.5 8.7 1.8e+02 2.0 6.0 2.5 1 1 0 1 1 1 0 Rubredoxin Y1_Tnp PF01797.11 gi|73663840|ref|YP_300086.1| - 4.7e-26 91.0 1.2 5.1e-26 90.9 0.8 1.0 1 0 0 1 1 1 1 Transposase IS200 like Pox_MCEL PF03291.11 gi|73663840|ref|YP_300086.1| - 0.076 11.8 0.1 0.075 11.8 0.1 1.1 1 0 0 1 1 1 0 mRNA capping enzyme Hexapep PF00132.19 gi|73663842|ref|YP_300088.1| - 2e-19 68.1 22.9 1e-09 37.4 5.7 3.8 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|73663842|ref|YP_300088.1| - 9.2e-10 37.9 21.2 1.2e-06 27.8 5.3 3.6 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase Phage_integrase PF00589.17 gi|73663843|ref|YP_300089.1| - 3.6e-10 39.7 0.3 2.6e-09 36.9 0.2 1.9 1 1 0 1 1 1 1 Phage integrase family DNA_pol_B_thumb PF14791.1 gi|73663843|ref|YP_300089.1| - 0.053 13.2 0.0 0.17 11.6 0.0 1.9 1 0 0 1 1 1 0 DNA polymerase beta thumb Cdc6_C PF09079.6 gi|73663844|ref|YP_300090.1| - 2.5e-19 68.7 0.1 6e-19 67.5 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA PF00004.24 gi|73663844|ref|YP_300090.1| - 1.7e-08 34.6 0.0 3.5e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|73663844|ref|YP_300090.1| - 2.3e-06 27.7 0.0 5.4e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|73663844|ref|YP_300090.1| - 2.7e-05 23.8 0.0 5.6e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.1 gi|73663844|ref|YP_300090.1| - 0.00034 20.6 0.0 0.00096 19.1 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|73663844|ref|YP_300090.1| - 0.00085 19.0 0.5 0.00085 19.0 0.4 2.3 2 1 1 3 3 3 1 Archaeal ATPase Ribosomal_L7Ae PF01248.21 gi|73663844|ref|YP_300090.1| - 0.0035 16.8 0.3 0.01 15.2 0.2 1.7 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF2075 PF09848.4 gi|73663844|ref|YP_300090.1| - 0.004 16.1 0.0 0.0055 15.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_2 PF07724.9 gi|73663844|ref|YP_300090.1| - 0.0068 16.3 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.17 gi|73663844|ref|YP_300090.1| - 0.0092 16.1 0.6 0.53 10.4 0.2 3.1 2 1 0 2 2 2 1 RNA helicase NB-ARC PF00931.17 gi|73663844|ref|YP_300090.1| - 0.033 13.0 0.1 0.094 11.5 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.1 gi|73663844|ref|YP_300090.1| - 0.091 12.3 0.6 0.14 11.6 0.4 1.5 1 1 0 1 1 1 0 AAA domain YopR_core PF09025.5 gi|73663844|ref|YP_300090.1| - 0.11 12.4 0.0 2.3 8.2 0.0 2.5 2 0 0 2 2 2 0 YopR Core PqqD PF05402.7 gi|73663844|ref|YP_300090.1| - 0.13 12.2 0.3 13 5.8 0.0 2.7 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD)