# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF11 PF01345.18 gi|386000718|ref|YP_005919017.1| - 8.4e-22 77.3 5.4 1.1e-11 44.8 0.1 4.6 4 0 0 4 4 4 3 Domain of unknown function DUF11 Chlam_OMP6 PF03504.13 gi|386000718|ref|YP_005919017.1| - 4.4e-05 23.7 0.0 0.00022 21.4 0.0 2.2 2 0 0 2 2 2 1 Chlamydia cysteine-rich outer membrane protein 6 DDE_Tnp_IS66 PF03050.14 gi|386000719|ref|YP_005919018.1| - 7.7e-49 166.7 0.0 7.7e-49 166.7 0.0 1.7 2 0 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.7 gi|386000719|ref|YP_005919018.1| - 6.5e-07 29.6 3.3 1.4e-06 28.5 3.3 1.6 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.6 gi|386000719|ref|YP_005919018.1| - 0.00013 22.2 0.1 0.00047 20.4 0.0 1.9 2 0 0 2 2 2 1 DDE domain DZR PF12773.7 gi|386000719|ref|YP_005919018.1| - 0.0035 17.3 0.1 0.0071 16.3 0.1 1.5 1 0 0 1 1 1 1 Double zinc ribbon DUF5623 PF18536.1 gi|386000719|ref|YP_005919018.1| - 0.012 15.9 0.0 0.048 14.0 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5623) TMF_DNA_bd PF12329.8 gi|386000719|ref|YP_005919018.1| - 0.013 15.5 4.6 0.048 13.7 3.0 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF737 PF05300.11 gi|386000719|ref|YP_005919018.1| - 0.027 14.8 5.2 0.064 13.6 5.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF737) MCC-bdg_PDZ PF10506.9 gi|386000719|ref|YP_005919018.1| - 0.052 13.6 1.8 0.16 12.0 1.8 1.9 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome zf-ribbon_3 PF13248.6 gi|386000719|ref|YP_005919018.1| - 0.056 12.9 2.2 5.9 6.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|386000719|ref|YP_005919018.1| - 0.074 12.8 2.1 3.2 7.6 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain MazG PF03819.17 gi|386000719|ref|YP_005919018.1| - 0.084 13.1 0.3 1.7 8.9 0.2 2.5 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain ZapB PF06005.12 gi|386000719|ref|YP_005919018.1| - 0.11 13.0 8.6 0.073 13.5 3.1 3.0 2 1 0 2 2 2 0 Cell division protein ZapB DivIVA PF05103.13 gi|386000719|ref|YP_005919018.1| - 0.14 12.3 4.1 0.19 11.8 1.9 2.1 2 0 0 2 2 2 0 DivIVA protein Zn-ribbon_8 PF09723.10 gi|386000719|ref|YP_005919018.1| - 0.14 12.3 0.5 22 5.3 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain DivIC PF04977.15 gi|386000719|ref|YP_005919018.1| - 0.21 11.4 4.0 0.68 9.7 4.0 1.8 1 0 0 1 1 1 0 Septum formation initiator TMCO5 PF14992.6 gi|386000719|ref|YP_005919018.1| - 0.3 10.6 1.8 0.36 10.4 0.6 1.7 2 0 0 2 2 2 0 TMCO5 family DNA_ligase_ZBD PF03119.16 gi|386000719|ref|YP_005919018.1| - 0.4 10.7 2.9 17 5.5 0.3 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.6 gi|386000719|ref|YP_005919018.1| - 0.79 9.1 3.2 15 5.0 0.3 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger Snf7 PF03357.21 gi|386000719|ref|YP_005919018.1| - 1.4 8.5 4.3 1.2 8.7 1.4 2.2 3 0 0 3 3 3 0 Snf7 UPF0547 PF10571.9 gi|386000719|ref|YP_005919018.1| - 1.4 9.0 3.8 16 5.7 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 XRCC4 PF06632.12 gi|386000719|ref|YP_005919018.1| - 1.9 7.3 5.8 0.8 8.5 2.0 2.0 2 0 0 2 2 2 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 bZIP_1 PF00170.21 gi|386000719|ref|YP_005919018.1| - 4.9 7.3 9.2 0.96 9.6 1.9 3.1 3 0 0 3 3 3 0 bZIP transcription factor Tubulin PF00091.25 gi|386000720|ref|YP_005919019.1| - 1.5e-32 113.4 0.0 2.3e-32 112.8 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|386000720|ref|YP_005919019.1| - 8.1e-05 22.0 0.0 0.00068 18.9 0.0 2.1 1 1 1 2 2 2 1 Tubulin like DUF11 PF01345.18 gi|386000721|ref|YP_005919020.1| - 7e-17 61.5 4.0 1.3e-09 38.2 2.1 2.5 1 1 1 2 2 2 2 Domain of unknown function DUF11 TRAP_beta PF05753.14 gi|386000721|ref|YP_005919020.1| - 7.6e-15 54.8 0.4 7.4e-08 32.0 0.2 2.2 1 1 1 2 2 2 2 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|386000721|ref|YP_005919020.1| - 3.7e-10 40.0 0.7 0.00025 21.2 0.0 2.5 2 1 0 2 2 2 2 CARDB BatD PF13584.6 gi|386000721|ref|YP_005919020.1| - 4e-06 25.9 2.8 0.00064 18.7 0.3 2.3 1 1 1 2 2 2 2 Oxygen tolerance NPCBM_assoc PF10633.9 gi|386000721|ref|YP_005919020.1| - 2e-05 24.7 0.9 0.19 12.0 0.2 3.7 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase bMG10 PF17973.1 gi|386000721|ref|YP_005919020.1| - 0.0044 17.2 1.1 0.061 13.5 0.1 2.8 3 0 0 3 3 3 1 Bacterial Alpha-2-macroglobulin MG10 domain DUF756 PF05506.12 gi|386000721|ref|YP_005919020.1| - 0.061 14.2 0.1 0.41 11.6 0.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF756) Cohesin PF00963.18 gi|386000721|ref|YP_005919020.1| - 0.37 11.0 2.7 0.35 11.1 0.8 1.9 2 0 0 2 2 2 0 Cohesin domain QRPTase_C PF01729.19 gi|386000722|ref|YP_005919021.1| - 1.5e-53 181.0 0.0 2.3e-53 180.5 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|386000722|ref|YP_005919021.1| - 3e-20 72.0 0.0 6.9e-20 70.9 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain TMP-TENI PF02581.17 gi|386000722|ref|YP_005919021.1| - 0.0026 17.1 0.1 0.0084 15.5 0.1 1.8 1 1 1 2 2 2 1 Thiamine monophosphate synthase DUF108 PF01958.18 gi|386000723|ref|YP_005919022.1| - 5.5e-34 116.4 0.5 1.2e-33 115.3 0.5 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|386000723|ref|YP_005919022.1| - 1.3e-21 77.4 0.1 2.6e-21 76.5 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|386000723|ref|YP_005919022.1| - 5.8e-07 29.7 0.0 1e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 gi|386000723|ref|YP_005919022.1| - 2.6e-06 27.9 0.2 4.8e-06 27.1 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|386000723|ref|YP_005919022.1| - 4.1e-05 23.7 0.1 7.6e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|386000723|ref|YP_005919022.1| - 0.00029 21.6 0.0 0.00067 20.5 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|386000723|ref|YP_005919022.1| - 0.00054 20.2 0.2 0.004 17.4 0.1 2.3 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|386000723|ref|YP_005919022.1| - 0.0019 17.6 0.0 0.0033 16.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|386000723|ref|YP_005919022.1| - 0.0092 16.2 1.6 0.33 11.2 0.2 3.0 4 0 0 4 4 4 1 TrkA-N domain Semialdhyde_dh PF01118.24 gi|386000723|ref|YP_005919022.1| - 0.011 16.2 0.0 0.023 15.1 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|386000723|ref|YP_005919022.1| - 0.012 15.8 0.0 0.02 15.1 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Rossmann-like PF10727.9 gi|386000723|ref|YP_005919022.1| - 0.069 13.0 1.4 0.16 11.9 0.4 2.1 2 1 1 3 3 3 0 Rossmann-like domain NosD PF05048.13 gi|386000724|ref|YP_005919023.1| - 8.4e-43 146.4 21.9 6.2e-23 81.3 11.0 2.4 1 1 0 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386000724|ref|YP_005919023.1| - 9.7e-23 80.8 24.0 2e-15 57.0 0.1 2.3 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|386000724|ref|YP_005919023.1| - 0.0063 16.4 11.5 0.009 15.9 0.0 3.3 1 1 0 2 2 2 1 Pectate lyase superfamily protein AICARFT_IMPCHas PF01808.18 gi|386000725|ref|YP_005919024.1| - 6.7e-87 291.7 0.0 8.6e-87 291.3 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme DUF167 PF02594.16 gi|386000726|ref|YP_005919025.1| - 8.9e-17 61.0 0.0 1.1e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DegT_DnrJ_EryC1 PF01041.17 gi|386000726|ref|YP_005919025.1| - 0.0078 15.6 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Toprim PF01751.22 gi|386000727|ref|YP_005919026.1| - 0.0004 20.6 0.1 0.0033 17.6 0.1 2.1 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|386000727|ref|YP_005919026.1| - 0.00076 19.9 0.1 0.0044 17.5 0.1 2.0 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|386000727|ref|YP_005919026.1| - 0.0096 16.3 0.0 0.014 15.8 0.0 1.4 1 1 0 1 1 1 1 Toprim-like NTPase_1 PF03266.15 gi|386000728|ref|YP_005919027.1| - 4.5e-49 166.6 0.0 5.1e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|386000728|ref|YP_005919027.1| - 1.6e-06 27.9 0.5 1.9e-06 27.6 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_5 PF07728.14 gi|386000728|ref|YP_005919027.1| - 0.0001 22.3 1.1 0.019 15.0 0.2 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|386000728|ref|YP_005919027.1| - 0.00036 21.1 0.0 0.00061 20.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|386000728|ref|YP_005919027.1| - 0.00078 19.7 0.5 0.11 12.8 0.2 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|386000728|ref|YP_005919027.1| - 0.0013 19.2 1.7 0.0028 18.1 1.7 1.7 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|386000728|ref|YP_005919027.1| - 0.0019 18.3 0.3 0.015 15.3 0.3 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|386000728|ref|YP_005919027.1| - 0.002 18.5 0.9 0.01 16.2 0.9 2.0 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|386000728|ref|YP_005919027.1| - 0.0021 17.1 0.3 0.0037 16.3 0.3 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|386000728|ref|YP_005919027.1| - 0.0085 15.8 0.0 0.028 14.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|386000728|ref|YP_005919027.1| - 0.019 14.7 1.0 0.036 13.8 0.1 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|386000728|ref|YP_005919027.1| - 0.027 14.2 4.8 0.088 12.5 4.8 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|386000728|ref|YP_005919027.1| - 0.028 14.7 1.5 0.055 13.7 1.4 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|386000728|ref|YP_005919027.1| - 0.046 13.3 3.1 0.53 9.8 0.1 2.5 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|386000728|ref|YP_005919027.1| - 0.046 14.1 0.0 0.092 13.2 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|386000728|ref|YP_005919027.1| - 0.051 13.6 0.1 6.2 6.9 0.1 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|386000728|ref|YP_005919027.1| - 0.055 13.4 0.1 0.089 12.7 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|386000728|ref|YP_005919027.1| - 0.065 13.4 0.2 0.11 12.7 0.2 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|386000728|ref|YP_005919027.1| - 0.16 11.9 0.2 0.28 11.1 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.6 gi|386000728|ref|YP_005919027.1| - 0.16 12.4 0.5 0.35 11.3 0.4 1.8 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|386000728|ref|YP_005919027.1| - 0.17 12.4 0.1 0.24 11.9 0.1 1.4 1 1 0 1 1 1 0 ABC transporter UPF0051 PF01458.17 gi|386000729|ref|YP_005919028.1| - 2.4e-46 158.2 0.0 3e-46 157.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF1428 PF07237.11 gi|386000729|ref|YP_005919028.1| - 0.094 13.0 0.0 0.25 11.6 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1428) ABC_tran PF00005.27 gi|386000730|ref|YP_005919029.1| - 2.5e-24 86.4 0.0 3.9e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386000730|ref|YP_005919029.1| - 6.5e-09 36.0 0.0 0.00063 19.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|386000730|ref|YP_005919029.1| - 0.0032 16.9 0.2 0.39 10.1 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|386000730|ref|YP_005919029.1| - 0.0036 17.7 0.1 0.0092 16.4 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|386000730|ref|YP_005919029.1| - 0.007 16.9 0.3 0.015 15.8 0.3 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|386000730|ref|YP_005919029.1| - 0.012 15.2 0.1 0.021 14.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|386000730|ref|YP_005919029.1| - 0.02 14.5 0.1 0.025 14.3 0.1 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|386000730|ref|YP_005919029.1| - 0.022 14.5 0.2 0.041 13.6 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain CdhC PF03598.15 gi|386000730|ref|YP_005919029.1| - 0.043 13.7 0.8 53 3.6 0.0 3.5 2 2 2 4 4 4 0 CO dehydrogenase/acetyl-CoA synthase complex beta subunit Zeta_toxin PF06414.12 gi|386000730|ref|YP_005919029.1| - 0.053 12.8 0.0 0.99 8.7 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin ATPase_2 PF01637.18 gi|386000730|ref|YP_005919029.1| - 0.068 13.1 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|386000730|ref|YP_005919029.1| - 0.08 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|386000730|ref|YP_005919029.1| - 0.09 13.3 0.1 11 6.6 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|386000730|ref|YP_005919029.1| - 0.1 13.0 0.0 0.11 12.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|386000730|ref|YP_005919029.1| - 0.11 12.4 0.1 0.17 11.8 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|386000730|ref|YP_005919029.1| - 0.11 12.7 0.1 0.17 12.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|386000730|ref|YP_005919029.1| - 0.15 11.8 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|386000730|ref|YP_005919029.1| - 0.17 12.2 0.1 0.37 11.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain GXGXG PF01493.19 gi|386000731|ref|YP_005919030.1| - 6.5e-07 29.1 20.5 3.7e-06 26.7 8.3 2.8 2 1 0 2 2 2 2 GXGXG motif FapA PF03961.13 gi|386000731|ref|YP_005919030.1| - 4.1 5.9 6.4 11 4.6 0.9 2.1 2 0 0 2 2 2 0 Flagellar Assembly Protein A DUF373 PF04123.13 gi|386000732|ref|YP_005919031.1| - 6.3e-126 420.3 5.9 7.2e-126 420.2 5.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF2157 PF09925.9 gi|386000732|ref|YP_005919031.1| - 8.8 6.1 12.9 0.49 10.2 6.2 2.2 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) ThiC_Rad_SAM PF01964.18 gi|386000734|ref|YP_005919033.1| - 1.1e-170 568.0 0.3 1.2e-170 567.8 0.3 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Metalloenzyme PF01676.18 gi|386000735|ref|YP_005919034.1| - 9.9e-10 38.2 0.0 2.8e-09 36.7 0.0 1.6 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|386000735|ref|YP_005919034.1| - 1.8e-09 37.7 0.1 3.9e-08 33.3 0.0 2.4 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|386000735|ref|YP_005919034.1| - 3.4e-06 26.7 0.0 6.8e-06 25.7 0.0 1.6 1 1 0 1 1 1 1 Sulfatase Alk_phosphatase PF00245.20 gi|386000735|ref|YP_005919034.1| - 0.015 14.3 0.0 0.067 12.1 0.0 1.8 2 0 0 2 2 2 0 Alkaline phosphatase Fae PF08714.11 gi|386000736|ref|YP_005919035.1| - 7.2e-71 237.3 0.1 1.3e-70 236.5 0.1 1.4 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|386000736|ref|YP_005919035.1| - 6.6e-21 74.9 0.3 1.4e-20 73.8 0.2 1.6 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|386000736|ref|YP_005919035.1| - 3.4e-07 29.9 0.1 6.3e-07 29.0 0.1 1.5 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.17 gi|386000736|ref|YP_005919035.1| - 0.00097 18.7 0.7 0.12 11.8 0.2 2.2 2 0 0 2 2 2 2 PcrB family FMN_dh PF01070.18 gi|386000736|ref|YP_005919035.1| - 0.0017 17.4 2.5 0.0037 16.4 2.5 1.6 1 1 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|386000736|ref|YP_005919035.1| - 0.0068 15.5 0.3 0.011 14.7 0.3 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain AtuA PF07287.11 gi|386000736|ref|YP_005919035.1| - 0.013 14.3 0.7 0.027 13.2 0.7 1.4 1 1 0 1 1 1 0 Acyclic terpene utilisation family protein AtuA QRPTase_C PF01729.19 gi|386000736|ref|YP_005919035.1| - 0.024 14.4 0.4 0.056 13.2 0.4 1.7 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain DsbD PF02683.15 gi|386000737|ref|YP_005919036.1| - 3.2e-13 50.1 13.5 4.8e-13 49.5 13.5 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|386000737|ref|YP_005919036.1| - 8.3e-10 38.9 23.3 2.3e-08 34.2 22.5 2.3 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Glutaredoxin PF00462.24 gi|386000737|ref|YP_005919036.1| - 4.2e-05 23.7 0.0 8.3e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|386000737|ref|YP_005919036.1| - 0.029 14.4 0.0 0.05 13.6 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain DUF836 PF05768.14 gi|386000737|ref|YP_005919036.1| - 0.083 13.3 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) NosD PF05048.13 gi|386000739|ref|YP_005919038.1| - 2.4e-38 131.8 28.7 7.8e-23 81.0 9.4 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386000739|ref|YP_005919038.1| - 1.9e-36 125.3 44.9 6.4e-26 91.1 21.3 2.2 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|386000739|ref|YP_005919038.1| - 8.5e-06 25.3 24.5 0.00053 19.4 8.1 2.9 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.7 gi|386000739|ref|YP_005919038.1| - 0.082 12.7 23.0 6 6.7 6.0 3.7 1 1 1 2 2 2 0 Pectate lyase superfamily protein Rhodanese PF00581.20 gi|386000740|ref|YP_005919039.1| - 3.2e-20 72.6 0.0 3.2e-09 37.2 0.0 2.5 2 0 0 2 2 2 2 Rhodanese-like domain FlgD_ig PF13860.6 gi|386000740|ref|YP_005919039.1| - 0.038 13.9 0.1 0.083 12.8 0.1 1.6 1 0 0 1 1 1 0 FlgD Ig-like domain Peptidase_S6 PF02395.16 gi|386000740|ref|YP_005919039.1| - 0.082 10.9 0.0 0.15 10.1 0.0 1.3 1 0 0 1 1 1 0 Immunoglobulin A1 protease zf-4CXXC_R1 PF10497.9 gi|386000740|ref|YP_005919039.1| - 0.2 11.9 0.0 0.4 10.9 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 zf-RanBP PF00641.18 gi|386000740|ref|YP_005919039.1| - 0.56 9.6 3.6 0.18 11.2 0.3 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Peptidase_S8 PF00082.22 gi|386000741|ref|YP_005919040.1| - 4.1e-51 174.0 0.1 5.4e-51 173.6 0.1 1.1 1 0 0 1 1 1 1 Subtilase family Big_7 PF17957.1 gi|386000741|ref|YP_005919040.1| - 0.0065 17.2 0.1 10 7.0 0.0 3.4 3 1 1 4 4 4 2 Bacterial Ig domain Y_Y_Y PF07495.13 gi|386000741|ref|YP_005919040.1| - 0.16 12.0 0.0 24 5.0 0.0 2.4 2 0 0 2 2 2 0 Y_Y_Y domain Aldolase_II PF00596.21 gi|386000742|ref|YP_005919041.1| - 8.3e-36 123.7 0.2 9e-36 123.5 0.2 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain CBS PF00571.28 gi|386000743|ref|YP_005919042.1| - 9.1e-29 99.7 3.6 3.2e-14 53.1 0.3 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|386000743|ref|YP_005919042.1| - 4.8e-13 49.0 12.1 9.3e-08 31.6 0.6 3.0 1 1 1 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|386000743|ref|YP_005919042.1| - 0.00011 21.9 4.7 0.00011 21.9 4.7 2.2 1 1 0 2 2 2 1 Peptidase M50B-like TraB PF01963.17 gi|386000744|ref|YP_005919043.1| - 1e-32 114.1 0.0 2.5e-32 112.8 0.0 1.6 2 0 0 2 2 2 1 TraB family DUF1110 PF06533.12 gi|386000744|ref|YP_005919043.1| - 0.057 13.4 1.5 7.1 6.5 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1110) Tim44 PF04280.15 gi|386000744|ref|YP_005919043.1| - 0.061 13.4 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Tim44-like domain FA_desaturase PF00487.24 gi|386000744|ref|YP_005919043.1| - 3.3 7.5 6.4 15 5.3 1.7 2.3 1 1 1 2 2 2 0 Fatty acid desaturase F420_oxidored PF03807.17 gi|386000745|ref|YP_005919044.1| - 7.9e-17 61.6 0.1 1.4e-16 60.8 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|386000745|ref|YP_005919044.1| - 0.0012 19.3 0.0 0.0019 18.6 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|386000745|ref|YP_005919044.1| - 0.01 16.1 0.0 0.016 15.4 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 gi|386000745|ref|YP_005919044.1| - 0.065 13.2 0.0 0.089 12.8 0.0 1.2 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus OST_P2 PF18235.1 gi|386000745|ref|YP_005919044.1| - 0.068 13.1 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Oligosaccharyltransferase Peripheral 2 domain TRM PF02005.16 gi|386000746|ref|YP_005919045.1| - 4.2e-100 335.6 0.0 5e-100 335.3 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|386000746|ref|YP_005919045.1| - 0.0023 17.5 0.0 0.0044 16.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|386000746|ref|YP_005919045.1| - 0.069 12.9 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|386000746|ref|YP_005919045.1| - 0.08 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|386000746|ref|YP_005919045.1| - 0.098 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|386000746|ref|YP_005919045.1| - 0.13 13.0 0.0 0.3 11.8 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Cys_rich_KTR PF14205.6 gi|386000747|ref|YP_005919046.1| - 0.001 18.8 0.9 0.33 10.8 0.1 2.2 2 0 0 2 2 2 2 Cysteine-rich KTR zinc_ribbon_2 PF13240.6 gi|386000747|ref|YP_005919046.1| - 0.0026 17.4 6.8 0.02 14.6 1.5 2.3 2 0 0 2 2 2 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|386000747|ref|YP_005919046.1| - 0.003 17.5 2.5 0.003 17.5 2.5 1.7 2 1 0 2 2 1 1 NAD-dependent DNA ligase C4 zinc finger domain A2L_zn_ribbon PF08792.10 gi|386000747|ref|YP_005919046.1| - 0.0069 16.1 3.5 0.36 10.6 0.2 2.3 2 0 0 2 2 2 1 A2L zinc ribbon domain zf-tcix PF14952.6 gi|386000747|ref|YP_005919046.1| - 0.0073 15.9 1.7 0.07 12.8 0.4 2.1 2 0 0 2 2 2 1 Putative treble-clef, zinc-finger, Zn-binding Terminase_GpA PF05876.12 gi|386000747|ref|YP_005919046.1| - 0.0086 14.7 1.1 0.0098 14.5 1.1 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) DZR PF12773.7 gi|386000747|ref|YP_005919046.1| - 0.02 14.9 2.5 0.041 13.9 2.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|386000747|ref|YP_005919046.1| - 0.022 14.7 2.5 0.19 11.7 0.3 2.2 2 0 0 2 2 2 0 Nudix N-terminal RecR PF02132.15 gi|386000747|ref|YP_005919046.1| - 0.024 14.2 2.1 1.3 8.6 0.0 2.4 2 1 0 2 2 2 0 RecR protein Zn_Tnp_IS1595 PF12760.7 gi|386000747|ref|YP_005919046.1| - 0.036 14.0 4.4 0.2 11.6 4.5 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-RING_7 PF02591.15 gi|386000747|ref|YP_005919046.1| - 0.036 14.2 0.4 5.3 7.3 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|386000747|ref|YP_005919046.1| - 0.05 13.5 3.1 2.4 8.1 0.6 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|386000747|ref|YP_005919046.1| - 0.051 13.0 7.6 1.2 8.6 2.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF3268 PF11672.8 gi|386000747|ref|YP_005919046.1| - 0.067 13.5 0.7 0.09 13.1 0.7 1.2 1 0 0 1 1 1 0 zinc-finger-containing domain HypA PF01155.19 gi|386000747|ref|YP_005919046.1| - 0.078 13.0 0.5 0.091 12.8 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|386000747|ref|YP_005919046.1| - 0.082 12.6 6.4 0.12 12.1 1.9 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-3CxxC_2 PF17180.4 gi|386000747|ref|YP_005919046.1| - 0.15 12.8 4.4 4.5 8.1 0.6 2.1 1 1 1 2 2 2 0 Zinc-binding domain TniQ PF06527.11 gi|386000747|ref|YP_005919046.1| - 0.17 12.6 3.4 1.5 9.6 0.4 2.0 1 1 1 2 2 2 0 TniQ zf-TFIIB PF13453.6 gi|386000747|ref|YP_005919046.1| - 0.24 10.8 7.8 4 6.9 7.8 2.2 1 1 0 1 1 1 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|386000747|ref|YP_005919046.1| - 0.32 10.6 3.7 10 5.8 1.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|386000747|ref|YP_005919046.1| - 0.94 9.7 7.2 4.2 7.6 1.9 2.3 1 1 1 2 2 2 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|386000747|ref|YP_005919046.1| - 1.4 8.9 7.0 9.8 6.2 7.0 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Zn_ribbon_SprT PF17283.2 gi|386000747|ref|YP_005919046.1| - 1.5 8.8 7.4 10 6.1 7.4 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Ogr_Delta PF04606.12 gi|386000747|ref|YP_005919046.1| - 1.7 8.7 6.2 12 6.0 6.2 2.1 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-H2C2_2 PF13465.6 gi|386000747|ref|YP_005919046.1| - 5 7.7 6.7 1.9 9.1 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger double domain NOB1_Zn_bind PF08772.11 gi|386000747|ref|YP_005919046.1| - 5.1 7.3 7.3 5.4 7.3 1.5 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf_C2H2_10 PF18414.1 gi|386000747|ref|YP_005919046.1| - 5.4 6.7 9.9 3 7.5 0.3 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger SPP PF06550.11 gi|386000748|ref|YP_005919047.1| - 1.1e-77 261.2 14.6 1.4e-77 260.9 14.6 1.1 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|386000748|ref|YP_005919047.1| - 1.5e-07 31.2 4.2 4.6e-07 29.7 4.2 1.7 1 1 0 1 1 1 1 Signal peptide peptidase DUF2070 PF09843.9 gi|386000748|ref|YP_005919047.1| - 9.4 4.4 12.9 13 4.0 12.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CYTH PF01928.21 gi|386000749|ref|YP_005919048.1| - 3.1e-30 105.4 0.1 3.6e-30 105.2 0.1 1.0 1 0 0 1 1 1 1 CYTH domain tRNA-synt_1 PF00133.22 gi|386000750|ref|YP_005919049.1| - 7.6e-127 424.1 0.0 2.2e-125 419.3 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|386000750|ref|YP_005919049.1| - 1.7e-33 115.8 0.0 3.3e-33 114.8 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|386000750|ref|YP_005919049.1| - 1.3e-22 80.1 0.1 1.3e-13 50.5 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|386000750|ref|YP_005919049.1| - 1.5e-06 27.8 0.0 0.01 15.2 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|386000750|ref|YP_005919049.1| - 0.00026 20.6 0.1 0.00068 19.2 0.1 1.6 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DZR PF12773.7 gi|386000750|ref|YP_005919049.1| - 0.0011 18.9 2.1 0.054 13.5 0.1 3.1 3 0 0 3 3 3 1 Double zinc ribbon DUF3670 PF12419.8 gi|386000750|ref|YP_005919049.1| - 0.13 12.1 0.0 1.5 8.7 0.0 2.4 2 0 0 2 2 2 0 SNF2 Helicase protein Zn-ribbon_8 PF09723.10 gi|386000750|ref|YP_005919049.1| - 0.51 10.5 5.3 24 5.1 3.3 3.0 2 1 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|386000750|ref|YP_005919049.1| - 0.75 9.8 4.8 32 4.5 0.0 3.6 3 0 0 3 3 3 0 Nudix N-terminal zf-ISL3 PF14690.6 gi|386000750|ref|YP_005919049.1| - 0.76 10.5 3.5 42 4.9 0.0 3.5 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.11 gi|386000750|ref|YP_005919049.1| - 1.8 8.3 5.1 3 7.6 0.0 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf_UBZ PF18439.1 gi|386000750|ref|YP_005919049.1| - 4.1 7.1 4.6 34 4.1 0.0 3.4 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Ribo_biogen_C PF04034.13 gi|386000751|ref|YP_005919050.1| - 8.5e-46 154.8 0.0 1e-45 154.6 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|386000751|ref|YP_005919050.1| - 7.5e-13 48.1 0.2 1.2e-12 47.4 0.2 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DTW PF03942.15 gi|386000751|ref|YP_005919050.1| - 0.17 11.6 0.0 0.37 10.5 0.0 1.6 1 1 0 1 1 1 0 DTW domain HSP20 PF00011.21 gi|386000752|ref|YP_005919051.1| - 1.5e-23 82.9 2.4 1.9e-23 82.5 2.4 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|386000752|ref|YP_005919051.1| - 1.3e-15 56.7 0.1 1.8e-15 56.2 0.1 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|386000752|ref|YP_005919051.1| - 0.00027 21.9 0.2 0.00042 21.3 0.2 1.3 1 0 0 1 1 1 1 CS domain DUF1380 PF07128.12 gi|386000752|ref|YP_005919051.1| - 0.023 14.9 0.1 0.037 14.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1380) DUF4404 PF14357.6 gi|386000752|ref|YP_005919051.1| - 0.068 13.8 0.0 0.31 11.7 0.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4404) DHBP_synthase PF00926.19 gi|386000753|ref|YP_005919052.1| - 1.8e-84 282.1 0.6 2.5e-84 281.6 0.6 1.2 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP_cyclohydro2 PF00925.20 gi|386000753|ref|YP_005919052.1| - 2.4e-74 248.4 0.0 5.9e-74 247.1 0.0 1.6 2 0 0 2 2 2 1 GTP cyclohydrolase II Peptidase_S8 PF00082.22 gi|386000754|ref|YP_005919053.1| - 2.8e-24 85.9 1.9 7.2e-24 84.6 1.9 1.4 1 1 0 1 1 1 1 Subtilase family NosD PF05048.13 gi|386000755|ref|YP_005919054.1| - 5.3e-85 284.5 162.0 2.4e-26 92.5 33.5 4.7 1 1 4 5 5 5 5 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386000755|ref|YP_005919054.1| - 2.2e-62 209.6 139.8 1.5e-17 63.9 35.0 5.2 1 1 3 5 5 5 5 Right handed beta helix region TPR_12 PF13424.6 gi|386000759|ref|YP_005919058.1| - 1.6e-62 207.8 24.7 2.3e-14 53.5 0.4 6.5 4 2 1 6 6 6 6 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386000759|ref|YP_005919058.1| - 4.3e-37 125.0 16.5 3.4e-05 23.6 0.0 11.3 11 0 0 11 11 11 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386000759|ref|YP_005919058.1| - 1.5e-35 118.4 24.9 0.0033 17.4 0.0 12.2 12 0 0 12 12 12 9 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386000759|ref|YP_005919058.1| - 8.4e-25 84.9 27.9 0.0011 18.8 0.0 11.1 11 0 0 11 11 11 7 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|386000759|ref|YP_005919058.1| - 2.3e-23 83.1 8.4 4.8e-08 32.7 0.2 4.0 1 1 3 4 4 4 4 MalT-like TPR region TPR_8 PF13181.6 gi|386000759|ref|YP_005919058.1| - 1.2e-21 75.1 24.8 0.018 15.2 0.0 11.3 11 0 0 11 11 11 7 Tetratricopeptide repeat TPR_1 PF00515.28 gi|386000759|ref|YP_005919058.1| - 8e-20 69.8 17.2 0.12 12.2 0.1 10.8 11 0 0 11 11 11 7 Tetratricopeptide repeat TPR_4 PF07721.14 gi|386000759|ref|YP_005919058.1| - 7.7e-16 57.0 26.3 0.067 13.9 0.3 10.7 10 0 0 10 10 10 4 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|386000759|ref|YP_005919058.1| - 1.5e-11 44.2 0.5 0.015 15.4 0.0 6.2 1 1 6 7 7 7 3 Anaphase-promoting complex subunit 5 TPR_3 PF07720.12 gi|386000759|ref|YP_005919058.1| - 6.2e-11 42.1 0.8 6 7.0 0.1 8.4 8 0 0 8 8 8 1 Tetratricopeptide repeat MIT PF04212.18 gi|386000759|ref|YP_005919058.1| - 1.6e-08 34.5 16.6 0.005 16.9 1.5 8.4 9 1 1 10 10 9 2 MIT (microtubule interacting and transport) domain TPR_17 PF13431.6 gi|386000759|ref|YP_005919058.1| - 2.2e-08 33.9 0.8 15 6.2 0.0 9.7 10 1 1 11 11 11 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386000759|ref|YP_005919058.1| - 2.2e-06 27.9 16.3 11 6.9 0.1 9.3 10 0 0 10 10 9 0 Tetratricopeptide repeat SNAP PF14938.6 gi|386000759|ref|YP_005919058.1| - 3.2e-06 26.8 0.0 0.17 11.3 0.0 3.3 1 1 1 3 3 3 2 Soluble NSF attachment protein, SNAP TPR_16 PF13432.6 gi|386000759|ref|YP_005919058.1| - 0.00013 22.6 15.6 16 6.2 0.1 7.9 7 2 1 8 8 8 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386000759|ref|YP_005919058.1| - 0.00041 20.9 23.6 12 7.0 1.2 10.4 11 1 1 12 12 10 0 Tetratricopeptide repeat DUF3151 PF11349.8 gi|386000759|ref|YP_005919058.1| - 0.0094 16.1 1.0 4.8 7.3 0.0 4.6 4 1 1 5 5 5 1 Protein of unknown function (DUF3151) DUF2972 PF11186.8 gi|386000759|ref|YP_005919058.1| - 0.031 14.2 0.0 22 4.9 0.0 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF2972) DAO PF01266.24 gi|386000759|ref|YP_005919058.1| - 0.13 11.8 1.5 19 4.7 0.3 3.1 1 1 1 2 2 2 0 FAD dependent oxidoreductase DUF1876 PF08962.11 gi|386000759|ref|YP_005919058.1| - 0.2 11.6 3.6 7.8 6.5 0.1 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1876) SRR1 PF07985.12 gi|386000759|ref|YP_005919058.1| - 0.67 10.0 6.0 11 6.1 0.1 4.8 5 0 0 5 5 5 0 SRR1 AAA_16 PF13191.6 gi|386000760|ref|YP_005919059.1| - 2.9e-07 31.0 0.5 1.1e-06 29.2 0.1 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|386000760|ref|YP_005919059.1| - 0.0018 18.6 0.5 0.28 11.5 0.1 2.7 2 1 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.9 gi|386000760|ref|YP_005919059.1| - 0.0097 14.9 0.5 3 6.7 0.0 2.5 3 0 0 3 3 3 2 Type IV secretion-system coupling protein DNA-binding domain AAA_7 PF12775.7 gi|386000760|ref|YP_005919059.1| - 0.034 13.7 0.0 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_29 PF13555.6 gi|386000760|ref|YP_005919059.1| - 0.2 11.4 0.0 0.41 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain GlutR_dimer PF00745.20 gi|386000760|ref|YP_005919059.1| - 0.23 11.9 2.6 0.26 11.7 0.5 2.2 2 0 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain KAP_NTPase PF07693.14 gi|386000760|ref|YP_005919059.1| - 0.24 10.6 6.1 0.075 12.3 2.5 1.9 2 1 0 2 2 2 0 KAP family P-loop domain JmjN PF02375.17 gi|386000760|ref|YP_005919059.1| - 0.25 11.3 0.9 27 4.8 0.0 2.6 2 0 0 2 2 2 0 jmjN domain KELK PF15796.5 gi|386000760|ref|YP_005919059.1| - 1.9 9.0 6.9 0.41 11.1 2.5 2.2 2 0 0 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Putative_PNPOx PF01243.20 gi|386000761|ref|YP_005919060.1| - 6.5e-19 67.9 0.0 8.6e-19 67.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxase_2 PF12766.7 gi|386000761|ref|YP_005919060.1| - 0.014 16.0 0.0 0.022 15.4 0.0 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|386000762|ref|YP_005919061.1| - 8.1e-15 54.8 0.0 1.1e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.12 gi|386000762|ref|YP_005919061.1| - 0.037 13.8 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) Pyridox_oxase_2 PF12766.7 gi|386000762|ref|YP_005919061.1| - 0.057 14.0 0.0 0.081 13.5 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|386000762|ref|YP_005919061.1| - 0.12 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like GATase_3 PF07685.14 gi|386000763|ref|YP_005919062.1| - 1.1e-38 132.9 0.0 1.5e-38 132.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|386000763|ref|YP_005919062.1| - 6.1e-17 62.1 0.2 1.8e-12 47.5 0.0 2.9 2 1 1 3 3 3 2 AAA domain CbiA PF01656.23 gi|386000763|ref|YP_005919062.1| - 1.1e-15 57.8 0.0 1.7e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|386000763|ref|YP_005919062.1| - 0.021 14.7 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SNO PF01174.19 gi|386000763|ref|YP_005919062.1| - 0.063 13.1 0.0 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.24 gi|386000763|ref|YP_005919062.1| - 0.16 11.8 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family Fer4_NifH PF00142.18 gi|386000764|ref|YP_005919063.1| - 5.3e-91 304.8 0.2 6.5e-91 304.5 0.2 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|386000764|ref|YP_005919063.1| - 1.2e-11 44.8 0.0 2.2e-11 43.9 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|386000764|ref|YP_005919063.1| - 1.3e-10 41.2 0.0 6.3e-10 38.9 0.0 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|386000764|ref|YP_005919063.1| - 2.8e-08 33.9 0.0 5.3e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|386000764|ref|YP_005919063.1| - 6.5e-06 25.5 0.9 1.1e-05 24.8 0.5 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|386000764|ref|YP_005919063.1| - 0.0025 17.2 0.2 0.0051 16.1 0.0 1.5 2 0 0 2 2 2 1 ATPase MipZ MeaB PF03308.16 gi|386000764|ref|YP_005919063.1| - 0.0032 16.5 0.6 0.0044 16.0 0.6 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|386000764|ref|YP_005919063.1| - 0.0051 16.6 0.0 0.009 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|386000764|ref|YP_005919063.1| - 0.0065 16.3 0.3 2.2 8.0 0.0 2.2 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein DUF87 PF01935.17 gi|386000764|ref|YP_005919063.1| - 0.025 14.7 0.0 0.045 13.9 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_16 PF13191.6 gi|386000764|ref|YP_005919063.1| - 0.037 14.4 0.0 0.22 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|386000764|ref|YP_005919063.1| - 0.05 13.2 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|386000764|ref|YP_005919063.1| - 0.084 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NTPase_1 PF03266.15 gi|386000764|ref|YP_005919063.1| - 0.093 12.6 0.1 1 9.3 0.0 2.2 2 0 0 2 2 2 0 NTPase SRP54 PF00448.22 gi|386000764|ref|YP_005919063.1| - 0.13 11.9 0.1 0.2 11.2 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|386000764|ref|YP_005919063.1| - 0.24 10.5 0.1 0.37 9.9 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|386000764|ref|YP_005919063.1| - 0.29 10.8 0.2 0.42 10.3 0.2 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein S-layer PF07752.11 gi|386000765|ref|YP_005919064.1| - 6.9e-120 398.9 0.0 4.8e-63 212.6 0.2 2.1 2 0 0 2 2 2 2 S-layer protein DUF2625 PF10946.8 gi|386000765|ref|YP_005919064.1| - 0.081 12.0 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF2625 Pro_dh PF01619.18 gi|386000766|ref|YP_005919065.1| - 1.1e-15 57.9 0.0 2.4e-08 33.9 0.0 3.0 2 1 0 2 2 2 2 Proline dehydrogenase Peripla_BP_2 PF01497.18 gi|386000767|ref|YP_005919066.1| - 0.083 12.4 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein DUF1175 PF06672.11 gi|386000768|ref|YP_005919067.1| - 0.14 11.9 0.1 0.2 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1175) Pribosyltran PF00156.27 gi|386000769|ref|YP_005919068.1| - 1.7e-20 73.1 0.3 3e-20 72.3 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyltran_N PF13793.6 gi|386000769|ref|YP_005919068.1| - 3.7e-20 72.0 0.0 3.7e-17 62.3 0.0 2.3 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.6 gi|386000769|ref|YP_005919068.1| - 3.6e-09 36.9 2.0 5.5e-09 36.3 1.0 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|386000769|ref|YP_005919068.1| - 1.9e-06 27.5 0.1 3e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|386000769|ref|YP_005919068.1| - 0.024 14.2 0.0 0.065 12.7 0.0 1.6 1 1 1 2 2 2 0 Phosphoribosyl transferase PmbA_TldD PF01523.16 gi|386000770|ref|YP_005919069.1| - 7.4e-51 173.6 0.7 9.7e-51 173.2 0.7 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PAC2 PF09754.9 gi|386000771|ref|YP_005919070.1| - 3.3e-54 184.1 0.1 3.8e-54 183.9 0.1 1.0 1 0 0 1 1 1 1 PAC2 family DUF4743 PF15916.5 gi|386000771|ref|YP_005919070.1| - 0.17 11.8 0.5 3.3 7.7 0.1 2.9 4 0 0 4 4 4 0 Domain of unknown function (DUF4743) Nop10p PF04135.12 gi|386000772|ref|YP_005919071.1| - 3.8e-24 84.5 2.7 4e-24 84.4 2.7 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|386000772|ref|YP_005919071.1| - 8.5e-07 28.4 1.2 1.1e-06 28.1 1.2 1.2 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|386000772|ref|YP_005919071.1| - 0.014 13.3 0.3 0.014 13.3 0.3 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 NRDD PF13597.6 gi|386000772|ref|YP_005919071.1| - 0.1 11.3 0.4 0.089 11.6 0.4 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase EIF_2_alpha PF07541.12 gi|386000773|ref|YP_005919072.1| - 3.1e-22 78.8 0.1 6.2e-22 77.9 0.1 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|386000773|ref|YP_005919072.1| - 8.7e-09 35.6 0.1 2e-08 34.5 0.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain Ribosomal_S27e PF01667.17 gi|386000774|ref|YP_005919073.1| - 2.6e-23 81.5 1.7 2.7e-23 81.4 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 C1_1 PF00130.22 gi|386000774|ref|YP_005919073.1| - 0.019 14.8 0.7 0.025 14.4 0.7 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RanBP PF00641.18 gi|386000774|ref|YP_005919073.1| - 0.034 13.5 1.9 1.5 8.2 0.0 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Stc1 PF12898.7 gi|386000774|ref|YP_005919073.1| - 0.08 13.5 0.9 0.11 13.1 0.9 1.3 1 1 0 1 1 1 0 Stc1 domain Sgf11 PF08209.11 gi|386000774|ref|YP_005919073.1| - 0.12 11.9 2.4 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_6 PF14599.6 gi|386000774|ref|YP_005919073.1| - 0.13 12.3 2.9 0.24 11.4 2.9 1.5 1 1 0 1 1 1 0 Zinc-ribbon zf-BED PF02892.15 gi|386000774|ref|YP_005919073.1| - 0.28 11.2 2.0 2.2 8.4 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger ZZ PF00569.17 gi|386000774|ref|YP_005919073.1| - 0.33 10.8 3.9 0.86 9.5 3.9 1.6 1 1 0 1 1 1 0 Zinc finger, ZZ type Ribosomal_L44 PF00935.19 gi|386000775|ref|YP_005919074.1| - 1e-23 83.6 4.8 1.3e-23 83.2 4.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-H2C2_2 PF13465.6 gi|386000775|ref|YP_005919074.1| - 0.014 15.8 7.7 1.7 9.2 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger double domain zf-C4_ClpX PF06689.13 gi|386000775|ref|YP_005919074.1| - 0.12 12.3 3.2 7 6.6 0.1 2.2 2 0 0 2 2 2 0 ClpX C4-type zinc finger Ribosomal_L33 PF00471.20 gi|386000775|ref|YP_005919074.1| - 0.17 12.4 2.1 0.17 12.4 2.1 2.2 2 0 0 2 2 2 0 Ribosomal protein L33 DUF866 PF05907.13 gi|386000775|ref|YP_005919074.1| - 0.88 9.5 3.7 13 5.6 0.3 2.1 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF866) Zn_Tnp_IS1 PF03811.13 gi|386000775|ref|YP_005919074.1| - 1.1 9.0 8.6 5.6 6.8 0.5 2.5 2 1 0 2 2 2 0 InsA N-terminal domain Sld5 PF05916.11 gi|386000776|ref|YP_005919075.1| - 0.027 14.9 0.1 0.051 14.0 0.1 1.4 1 0 0 1 1 1 0 GINS complex protein DNA_primase_S PF01896.19 gi|386000777|ref|YP_005919076.1| - 1e-21 77.7 0.0 6.1e-21 75.2 0.0 2.2 1 1 0 1 1 1 1 DNA primase small subunit CN_hydrolase PF00795.22 gi|386000778|ref|YP_005919077.1| - 1.1e-42 146.2 0.0 1.3e-42 146.0 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase TF_Zn_Ribbon PF08271.12 gi|386000779|ref|YP_005919078.1| - 0.00044 19.7 0.3 0.33 10.5 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|386000779|ref|YP_005919078.1| - 0.00046 19.5 0.9 0.12 11.8 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|386000779|ref|YP_005919078.1| - 0.0012 18.5 0.9 0.23 11.2 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|386000779|ref|YP_005919078.1| - 0.0012 18.4 1.2 1.3 8.8 0.2 2.3 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain ADK_lid PF05191.14 gi|386000779|ref|YP_005919078.1| - 0.0013 18.7 0.6 0.53 10.3 0.1 2.3 2 0 0 2 2 2 1 Adenylate kinase, active site lid PhnA_Zn_Ribbon PF08274.12 gi|386000779|ref|YP_005919078.1| - 0.0069 16.3 0.8 0.29 11.1 0.1 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon ribosomal_L24 PF17136.4 gi|386000779|ref|YP_005919078.1| - 0.0092 16.4 0.3 2.7 8.5 0.0 2.1 2 0 0 2 2 2 1 Ribosomal proteins 50S L24/mitochondrial 39S L24 DZR PF12773.7 gi|386000779|ref|YP_005919078.1| - 0.01 15.8 0.2 0.032 14.3 0.2 1.7 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|386000779|ref|YP_005919078.1| - 0.015 15.2 0.1 0.18 11.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain ZF-HD_dimer PF04770.12 gi|386000779|ref|YP_005919078.1| - 0.016 15.5 2.2 0.076 13.4 0.6 2.0 1 1 1 2 2 2 0 ZF-HD protein dimerisation region Zn_ribbon_SprT PF17283.2 gi|386000779|ref|YP_005919078.1| - 0.018 15.0 1.4 0.34 10.8 1.2 2.0 1 1 1 2 2 2 0 SprT-like zinc ribbon domain zf_C2H2_13 PF18508.1 gi|386000779|ref|YP_005919078.1| - 0.026 14.1 1.0 0.25 11.0 0.1 2.1 2 0 0 2 2 2 0 Zinc finger domain Zn-ribbon_8 PF09723.10 gi|386000779|ref|YP_005919078.1| - 0.031 14.4 0.9 0.1 12.8 0.9 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-HYPF PF07503.12 gi|386000779|ref|YP_005919078.1| - 0.062 13.1 1.2 0.92 9.3 0.2 2.4 2 0 0 2 2 2 0 HypF finger Zn_Tnp_IS1595 PF12760.7 gi|386000779|ref|YP_005919078.1| - 0.077 13.0 3.6 3.9 7.5 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|386000779|ref|YP_005919078.1| - 0.078 13.1 3.0 2.9 8.1 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_L32p PF01783.23 gi|386000779|ref|YP_005919078.1| - 0.085 13.1 1.2 4.3 7.7 0.2 2.2 2 0 0 2 2 2 0 Ribosomal L32p protein family Nudix_N_2 PF14803.6 gi|386000779|ref|YP_005919078.1| - 0.11 12.5 2.6 8.7 6.4 0.0 2.3 2 1 0 2 2 2 0 Nudix N-terminal A2L_zn_ribbon PF08792.10 gi|386000779|ref|YP_005919078.1| - 0.12 12.1 1.0 3 7.7 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Vps36-NZF-N PF16988.5 gi|386000779|ref|YP_005919078.1| - 0.13 11.7 0.3 3.3 7.2 0.0 2.0 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain UPF1_Zn_bind PF09416.10 gi|386000779|ref|YP_005919078.1| - 0.14 12.1 0.0 0.14 12.1 0.0 1.0 1 0 0 1 1 1 0 RNA helicase (UPF2 interacting domain) Lar_restr_allev PF14354.6 gi|386000779|ref|YP_005919078.1| - 0.15 12.5 1.7 4.9 7.6 1.5 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-RRN7 PF11781.8 gi|386000779|ref|YP_005919078.1| - 0.15 11.8 3.6 0.91 9.3 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin_2 PF18073.1 gi|386000779|ref|YP_005919078.1| - 0.16 11.7 3.5 5.9 6.7 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-RING_4 PF14570.6 gi|386000779|ref|YP_005919078.1| - 0.18 11.6 2.7 0.93 9.3 2.7 1.9 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain Prok-RING_1 PF14446.6 gi|386000779|ref|YP_005919078.1| - 0.33 10.9 2.8 4.1 7.4 3.3 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-HIT PF04438.16 gi|386000779|ref|YP_005919078.1| - 0.37 10.7 3.4 2.2 8.3 0.3 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-RING_7 PF02591.15 gi|386000779|ref|YP_005919078.1| - 0.68 10.2 0.0 0.68 10.2 0.0 2.4 2 1 1 3 3 3 0 C4-type zinc ribbon domain PUA PF01472.20 gi|386000780|ref|YP_005919079.1| - 1.8e-07 31.0 0.7 1.9e-07 30.9 0.7 1.0 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|386000780|ref|YP_005919079.1| - 0.098 12.9 0.0 0.1 12.9 0.0 1.1 1 0 0 1 1 1 0 UPF0113 PUA domain His_Phos_1 PF00300.22 gi|386000781|ref|YP_005919080.1| - 1.4e-34 119.5 1.8 1.1e-24 87.2 1.2 2.0 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) dUTPase PF00692.19 gi|386000782|ref|YP_005919081.1| - 4e-09 36.2 0.0 6.2e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|386000782|ref|YP_005919081.1| - 0.012 14.4 0.0 0.013 14.3 0.0 1.3 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF1614 PF07758.11 gi|386000783|ref|YP_005919082.1| - 4.8e-46 156.9 14.1 4.8e-46 156.9 14.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) BofA PF07441.11 gi|386000784|ref|YP_005919083.1| - 1.4e-10 41.2 15.2 1.8e-10 40.9 15.2 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA DUF5336 PF17270.2 gi|386000784|ref|YP_005919083.1| - 1.2 8.7 11.9 1.5 8.4 11.9 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5336) DUF835 PF05763.12 gi|386000785|ref|YP_005919084.1| - 1.4e-46 157.6 0.0 7e-31 106.8 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF835) TPPK_C PF12555.8 gi|386000785|ref|YP_005919084.1| - 4.4 7.4 7.0 5 7.3 1.6 3.0 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal tRNA-synt_2 PF00152.20 gi|386000786|ref|YP_005919085.1| - 1.7e-89 300.0 0.0 2e-89 299.8 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|386000786|ref|YP_005919085.1| - 5.3e-11 42.4 0.0 9.9e-11 41.5 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|386000786|ref|YP_005919085.1| - 0.0038 16.7 1.4 1.8 7.9 0.1 3.1 4 0 0 4 4 4 2 tRNA synthetases class II core domain (F) DUF333 PF03891.15 gi|386000787|ref|YP_005919086.1| - 3.7e-22 78.3 0.1 6.5e-22 77.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF333) Lar_restr_allev PF14354.6 gi|386000789|ref|YP_005919088.1| - 6.2e-05 23.3 0.5 8.4e-05 22.9 0.5 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|386000789|ref|YP_005919088.1| - 0.00015 21.7 0.7 0.0002 21.3 0.7 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-RRN7 PF11781.8 gi|386000789|ref|YP_005919088.1| - 0.00078 19.1 0.1 0.00078 19.1 0.1 1.6 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|386000789|ref|YP_005919088.1| - 0.0063 16.6 0.6 1.2 9.3 0.0 2.2 2 0 0 2 2 2 2 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|386000789|ref|YP_005919088.1| - 0.041 13.6 3.0 1.3 8.8 0.0 2.4 2 1 0 2 2 2 0 A2L zinc ribbon domain C1_2 PF03107.16 gi|386000789|ref|YP_005919088.1| - 0.068 13.5 1.1 0.11 12.9 1.1 1.3 1 0 0 1 1 1 0 C1 domain PADR1 PF08063.12 gi|386000789|ref|YP_005919088.1| - 0.078 12.8 2.3 0.84 9.5 2.5 2.0 1 1 1 2 2 2 0 PADR1 (NUC008) domain CRISPR_assoc PF08798.11 gi|386000789|ref|YP_005919088.1| - 0.1 12.6 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 CRISPR associated protein TFIIS_C PF01096.18 gi|386000789|ref|YP_005919088.1| - 0.12 12.3 3.0 1.7 8.6 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin_2 PF18073.1 gi|386000789|ref|YP_005919088.1| - 0.15 11.8 3.0 4.1 7.2 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|386000789|ref|YP_005919088.1| - 0.49 10.0 5.0 2.6 7.6 5.0 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding Peripla_BP_6 PF13458.6 gi|386000790|ref|YP_005919089.1| - 5.2e-26 92.1 2.2 8.2e-26 91.5 2.2 1.3 1 1 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|386000790|ref|YP_005919089.1| - 8e-24 84.4 0.1 1.1e-23 83.9 0.1 1.2 1 1 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 gi|386000790|ref|YP_005919089.1| - 7.4e-09 34.9 0.1 9.9e-09 34.5 0.1 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_4 PF13407.6 gi|386000790|ref|YP_005919089.1| - 0.0063 16.1 0.2 0.01 15.4 0.2 1.4 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_5 PF13433.6 gi|386000790|ref|YP_005919089.1| - 0.016 14.2 0.0 0.027 13.5 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain preATP-grasp_3 PF18301.1 gi|386000790|ref|YP_005919089.1| - 0.17 12.2 0.0 1.9 8.8 0.0 2.3 2 0 0 2 2 2 0 pre ATP-grasp 3 domain MFS_1 PF07690.16 gi|386000791|ref|YP_005919090.1| - 9.9e-56 189.2 52.4 9.9e-56 189.2 52.4 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|386000791|ref|YP_005919090.1| - 1.3e-06 27.5 19.7 5e-05 22.3 4.1 2.2 2 0 0 2 2 2 2 MFS_1 like family MFS_2 PF13347.6 gi|386000791|ref|YP_005919090.1| - 0.00028 19.6 16.3 0.00028 19.6 16.3 3.7 2 2 1 3 3 3 2 MFS/sugar transport protein FMN_red PF03358.15 gi|386000792|ref|YP_005919091.1| - 1.7e-33 115.6 0.0 2.2e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|386000792|ref|YP_005919091.1| - 7.6e-09 35.6 0.0 1e-08 35.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold TetR_N PF00440.23 gi|386000792|ref|YP_005919091.1| - 0.025 14.4 0.3 0.83 9.5 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Flavoprotein PF02441.19 gi|386000793|ref|YP_005919092.1| - 3.1e-16 59.5 0.0 3.9e-16 59.2 0.0 1.3 1 1 0 1 1 1 1 Flavoprotein TrmB PF01978.19 gi|386000794|ref|YP_005919093.1| - 0.0079 16.1 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|386000794|ref|YP_005919093.1| - 0.055 13.7 0.0 0.12 12.6 0.0 1.6 1 1 1 2 2 2 0 Winged helix DNA-binding domain MoaF PF10703.9 gi|386000794|ref|YP_005919093.1| - 0.12 12.3 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 MoaF N-terminal domain tRNA_SAD PF07973.14 gi|386000795|ref|YP_005919094.1| - 2.7e-13 49.8 0.4 5.2e-13 48.9 0.4 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|386000795|ref|YP_005919094.1| - 5.8e-12 44.9 0.0 8.1e-12 44.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) pRN1_helical PF13010.6 gi|386000795|ref|YP_005919094.1| - 0.084 12.8 0.0 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 Primase helical domain DUF2099 PF09872.9 gi|386000796|ref|YP_005919095.1| - 1.2e-106 355.6 0.2 1.5e-106 355.3 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Nop PF01798.18 gi|386000799|ref|YP_005919098.1| - 5.6e-40 137.2 0.2 8.4e-40 136.7 0.2 1.3 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin tRNA_anti-codon PF01336.25 gi|386000800|ref|YP_005919099.1| - 0.00039 20.4 0.3 6.8 6.8 0.0 3.6 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain RMI1_C PF16099.5 gi|386000800|ref|YP_005919099.1| - 0.018 14.9 0.0 0.04 13.8 0.0 1.5 1 0 0 1 1 1 0 Recq-mediated genome instability protein 1, C-terminal OB-fold Gasdermin PF04598.12 gi|386000800|ref|YP_005919099.1| - 0.041 13.3 0.2 4.2 6.7 0.1 3.0 3 0 0 3 3 3 0 Gasdermin pore forming domain AsnC_trans_reg PF01037.21 gi|386000802|ref|YP_005919101.1| - 4e-12 45.9 0.6 4.7e-12 45.7 0.6 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|386000802|ref|YP_005919101.1| - 8.5e-05 22.5 0.9 9.7e-05 22.3 0.9 1.1 1 0 0 1 1 1 1 NapD protein GYD PF08734.11 gi|386000802|ref|YP_005919101.1| - 0.00017 21.4 0.1 0.00021 21.2 0.1 1.1 1 0 0 1 1 1 1 GYD domain ACT_4 PF13291.6 gi|386000802|ref|YP_005919101.1| - 0.0029 18.2 0.1 0.36 11.4 0.1 2.1 2 0 0 2 2 2 2 ACT domain Topo-VIb_trans PF09239.11 gi|386000803|ref|YP_005919102.1| - 2.1e-64 216.1 0.0 3.4e-64 215.5 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|386000803|ref|YP_005919102.1| - 2.4e-32 111.5 0.0 4.5e-32 110.6 0.0 1.5 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|386000803|ref|YP_005919102.1| - 3.6e-08 33.9 0.0 7.4e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|386000803|ref|YP_005919102.1| - 4.1e-06 26.7 0.0 8.3e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|386000803|ref|YP_005919102.1| - 7.6e-06 25.0 0.2 5.1e-05 22.2 0.0 2.0 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) TP6A_N PF04406.14 gi|386000804|ref|YP_005919103.1| - 2.9e-17 62.4 0.2 6.7e-17 61.2 0.2 1.7 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Amidohydro_2 PF04909.14 gi|386000805|ref|YP_005919104.1| - 2.1e-29 103.2 1.3 2.8e-29 102.8 1.3 1.2 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|386000805|ref|YP_005919104.1| - 0.045 13.1 0.0 0.23 10.8 0.0 2.2 1 1 0 1 1 1 0 TatD related DNase Trm112p PF03966.16 gi|386000806|ref|YP_005919105.1| - 1.2e-12 48.2 0.6 1.9e-12 47.5 0.6 1.3 1 1 0 1 1 1 1 Trm112p-like protein Prim_Zn_Ribbon PF08273.12 gi|386000806|ref|YP_005919105.1| - 0.018 15.3 0.1 0.023 15.0 0.1 1.2 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.6 gi|386000806|ref|YP_005919105.1| - 0.021 15.2 0.2 0.024 15.0 0.2 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|386000806|ref|YP_005919105.1| - 0.061 13.3 0.0 0.082 12.9 0.0 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain UBM PF14377.6 gi|386000806|ref|YP_005919105.1| - 0.1 12.1 0.3 0.18 11.3 0.3 1.5 1 0 0 1 1 1 0 Ubiquitin binding region Elf1 PF05129.13 gi|386000806|ref|YP_005919105.1| - 0.14 12.2 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.12 gi|386000806|ref|YP_005919105.1| - 0.16 11.5 3.2 0.85 9.2 3.2 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding CTP_synth_N PF06418.14 gi|386000807|ref|YP_005919106.1| - 4.3e-116 386.9 0.2 5.5e-116 386.5 0.2 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|386000807|ref|YP_005919106.1| - 1.1e-52 178.6 0.0 3e-52 177.2 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|386000807|ref|YP_005919106.1| - 9e-07 28.9 0.0 0.00022 21.1 0.0 3.0 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|386000807|ref|YP_005919106.1| - 0.00094 19.2 0.0 0.0017 18.4 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|386000807|ref|YP_005919106.1| - 0.072 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain DDE_Tnp_IS66 PF03050.14 gi|386000808|ref|YP_005919107.1| - 7.7e-49 166.7 0.0 7.7e-49 166.7 0.0 1.7 2 0 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.7 gi|386000808|ref|YP_005919107.1| - 6.5e-07 29.6 3.3 1.4e-06 28.5 3.3 1.6 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.6 gi|386000808|ref|YP_005919107.1| - 0.00013 22.2 0.1 0.00047 20.4 0.0 1.9 2 0 0 2 2 2 1 DDE domain DZR PF12773.7 gi|386000808|ref|YP_005919107.1| - 0.0035 17.3 0.1 0.0071 16.3 0.1 1.5 1 0 0 1 1 1 1 Double zinc ribbon DUF5623 PF18536.1 gi|386000808|ref|YP_005919107.1| - 0.012 15.9 0.0 0.048 14.0 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5623) TMF_DNA_bd PF12329.8 gi|386000808|ref|YP_005919107.1| - 0.013 15.5 4.6 0.048 13.7 3.0 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF737 PF05300.11 gi|386000808|ref|YP_005919107.1| - 0.027 14.8 5.2 0.064 13.6 5.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF737) MCC-bdg_PDZ PF10506.9 gi|386000808|ref|YP_005919107.1| - 0.052 13.6 1.8 0.16 12.0 1.8 1.9 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome zf-ribbon_3 PF13248.6 gi|386000808|ref|YP_005919107.1| - 0.056 12.9 2.2 5.9 6.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|386000808|ref|YP_005919107.1| - 0.074 12.8 2.1 3.2 7.6 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain MazG PF03819.17 gi|386000808|ref|YP_005919107.1| - 0.084 13.1 0.3 1.7 8.9 0.2 2.5 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain ZapB PF06005.12 gi|386000808|ref|YP_005919107.1| - 0.11 13.0 8.6 0.073 13.5 3.1 3.0 2 1 0 2 2 2 0 Cell division protein ZapB DivIVA PF05103.13 gi|386000808|ref|YP_005919107.1| - 0.14 12.3 4.1 0.19 11.8 1.9 2.1 2 0 0 2 2 2 0 DivIVA protein Zn-ribbon_8 PF09723.10 gi|386000808|ref|YP_005919107.1| - 0.14 12.3 0.5 22 5.3 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain DivIC PF04977.15 gi|386000808|ref|YP_005919107.1| - 0.21 11.4 4.0 0.68 9.7 4.0 1.8 1 0 0 1 1 1 0 Septum formation initiator TMCO5 PF14992.6 gi|386000808|ref|YP_005919107.1| - 0.3 10.6 1.8 0.36 10.4 0.6 1.7 2 0 0 2 2 2 0 TMCO5 family DNA_ligase_ZBD PF03119.16 gi|386000808|ref|YP_005919107.1| - 0.4 10.7 2.9 17 5.5 0.3 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.6 gi|386000808|ref|YP_005919107.1| - 0.79 9.1 3.2 15 5.0 0.3 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger Snf7 PF03357.21 gi|386000808|ref|YP_005919107.1| - 1.4 8.5 4.3 1.2 8.7 1.4 2.2 3 0 0 3 3 3 0 Snf7 UPF0547 PF10571.9 gi|386000808|ref|YP_005919107.1| - 1.4 9.0 3.8 16 5.7 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 XRCC4 PF06632.12 gi|386000808|ref|YP_005919107.1| - 1.9 7.3 5.8 0.8 8.5 2.0 2.0 2 0 0 2 2 2 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 bZIP_1 PF00170.21 gi|386000808|ref|YP_005919107.1| - 4.9 7.3 9.2 0.96 9.6 1.9 3.1 3 0 0 3 3 3 0 bZIP transcription factor PGM_PMM_IV PF00408.20 gi|386000809|ref|YP_005919108.1| - 0.12 12.6 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF4065 PF13274.6 gi|386000810|ref|YP_005919109.1| - 2.4e-16 60.6 0.2 3.8e-16 60.0 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4065) AAA_21 PF13304.6 gi|386000811|ref|YP_005919110.1| - 1.7e-29 103.6 0.1 5.8e-28 98.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|386000811|ref|YP_005919110.1| - 2.4e-23 83.5 0.0 1.2e-10 41.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|386000811|ref|YP_005919110.1| - 6.3e-09 36.6 0.0 8.6e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|386000811|ref|YP_005919110.1| - 5.5e-07 29.3 0.0 1.6e-05 24.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|386000811|ref|YP_005919110.1| - 0.00014 21.5 0.0 0.00026 20.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|386000811|ref|YP_005919110.1| - 0.0021 18.6 0.0 0.0041 17.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter DUF2813 PF11398.8 gi|386000811|ref|YP_005919110.1| - 0.12 11.6 0.1 5.7 6.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) DUF4276 PF14103.6 gi|386000812|ref|YP_005919111.1| - 8.2e-29 101.1 0.0 9.5e-29 100.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4276) DUF898 PF05987.13 gi|386000813|ref|YP_005919112.1| - 0.055 12.5 1.8 0.063 12.3 1.8 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF2207 PF09972.9 gi|386000813|ref|YP_005919112.1| - 0.45 9.2 1.4 0.48 9.1 1.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PhzC-PhzF PF02567.16 gi|386000814|ref|YP_005919113.1| - 9.3e-72 241.9 0.0 1.7e-71 241.0 0.0 1.4 1 1 0 1 1 1 1 Phenazine biosynthesis-like protein Acetyltransf_10 PF13673.7 gi|386000815|ref|YP_005919114.1| - 2.3e-14 53.4 0.0 2.7e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|386000815|ref|YP_005919114.1| - 2.1e-09 37.6 0.0 2.4e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|386000815|ref|YP_005919114.1| - 4.1e-08 33.5 0.0 5.9e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|386000815|ref|YP_005919114.1| - 0.0012 18.9 0.0 0.0035 17.4 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|386000815|ref|YP_005919114.1| - 0.013 16.1 0.0 0.019 15.6 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|386000815|ref|YP_005919114.1| - 0.021 14.8 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein AroM PF07302.11 gi|386000816|ref|YP_005919115.1| - 0.0082 15.6 0.0 0.0087 15.5 0.0 1.1 1 0 0 1 1 1 1 AroM protein E1-E2_ATPase PF00122.20 gi|386000818|ref|YP_005919117.1| - 1.6e-52 177.7 2.5 1.6e-52 177.7 2.5 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|386000818|ref|YP_005919117.1| - 3.7e-43 148.3 0.7 3.7e-43 148.3 0.7 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|386000818|ref|YP_005919117.1| - 1.8e-06 27.9 0.0 0.0015 18.3 0.1 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|386000818|ref|YP_005919117.1| - 6.2e-05 23.5 0.1 0.00021 21.8 0.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|386000818|ref|YP_005919117.1| - 0.027 14.5 0.0 0.069 13.2 0.0 1.6 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF262 PF03235.14 gi|386000819|ref|YP_005919118.1| - 2.8e-33 115.9 0.6 2.8e-33 115.9 0.6 2.4 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.11 gi|386000819|ref|YP_005919118.1| - 7.2e-30 103.7 0.3 7.2e-30 103.7 0.3 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF1524) Cnd1 PF12717.7 gi|386000819|ref|YP_005919118.1| - 0.13 12.3 0.1 0.33 11.0 0.0 1.7 2 0 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1 GntP_permease PF02447.16 gi|386000822|ref|YP_005919121.1| - 1.6e-28 99.6 21.8 2e-16 59.8 0.9 2.0 2 0 0 2 2 2 2 GntP family permease CitMHS PF03600.16 gi|386000822|ref|YP_005919121.1| - 0.005 16.1 23.4 0.0079 15.4 23.4 1.3 1 0 0 1 1 1 1 Citrate transporter DUF11 PF01345.18 gi|386000823|ref|YP_005919122.1| - 4.7e-16 58.9 0.4 0.0072 16.6 0.3 8.1 4 2 2 6 6 6 4 Domain of unknown function DUF11 CARDB PF07705.11 gi|386000823|ref|YP_005919122.1| - 1.8e-14 53.8 0.0 0.00072 19.8 0.0 8.0 8 1 0 8 8 8 3 CARDB NPCBM_assoc PF10633.9 gi|386000823|ref|YP_005919122.1| - 5.9e-10 39.3 3.9 0.00088 19.5 0.7 7.2 8 0 0 8 8 8 2 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|386000823|ref|YP_005919122.1| - 0.001 18.5 0.1 19 4.6 0.0 5.2 6 0 0 6 6 6 1 Translocon-associated protein beta (TRAPB) DUF1573 PF07610.11 gi|386000823|ref|YP_005919122.1| - 0.0077 16.2 0.0 39 4.4 0.0 5.7 7 0 0 7 7 7 0 Protein of unknown function (DUF1573) BatD PF13584.6 gi|386000823|ref|YP_005919122.1| - 0.0094 14.8 0.3 4.8 5.9 0.0 3.9 4 1 1 5 5 5 1 Oxygen tolerance A2M PF00207.22 gi|386000823|ref|YP_005919122.1| - 0.019 14.8 0.1 6.4 6.7 0.0 4.0 4 0 0 4 4 4 0 Alpha-2-macroglobulin family N_BRCA1_IG PF16158.5 gi|386000823|ref|YP_005919122.1| - 0.028 15.2 0.0 1.9 9.3 0.0 3.9 4 1 0 4 4 4 0 Ig-like domain from next to BRCA1 gene AGS_C PF18134.1 gi|386000823|ref|YP_005919122.1| - 0.23 11.4 0.0 22 5.1 0.0 3.0 3 0 0 3 3 3 0 Adenylyl/Guanylyl and SMODS C-terminal sensor domain YabA PF06156.13 gi|386000825|ref|YP_005919124.1| - 0.017 15.8 3.3 0.022 15.4 3.0 1.3 1 1 0 1 1 1 0 Initiation control protein YabA SlyX PF04102.12 gi|386000825|ref|YP_005919124.1| - 0.17 12.5 2.2 0.23 12.1 1.3 1.6 1 1 1 2 2 2 0 SlyX kleA_kleC PF17383.2 gi|386000825|ref|YP_005919124.1| - 0.18 12.2 7.7 1.3 9.4 3.7 2.9 1 1 2 3 3 3 0 Uncharacterized KorC regulated protein A Synaptobrevin PF00957.21 gi|386000825|ref|YP_005919124.1| - 2.1 8.2 3.9 6.4 6.6 1.1 2.3 1 1 1 3 3 3 0 Synaptobrevin SNO PF01174.19 gi|386000826|ref|YP_005919125.1| - 1.1e-40 139.6 0.0 1.2e-40 139.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|386000826|ref|YP_005919125.1| - 1.6e-09 37.6 0.0 2.1e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|386000826|ref|YP_005919125.1| - 0.00085 19.0 0.1 0.0012 18.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|386000826|ref|YP_005919125.1| - 0.012 15.4 0.1 0.018 14.9 0.1 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family GATase PF00117.28 gi|386000826|ref|YP_005919125.1| - 0.031 14.1 0.2 0.28 10.9 0.2 2.0 1 1 0 1 1 1 0 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|386000826|ref|YP_005919125.1| - 0.23 11.2 1.1 18 5.0 0.2 2.9 2 1 0 2 2 2 0 Peptidase C26 SOR_SNZ PF01680.17 gi|386000827|ref|YP_005919126.1| - 4.4e-93 310.8 8.2 5.8e-93 310.4 8.2 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|386000827|ref|YP_005919126.1| - 1.5e-08 34.3 10.0 1.5e-07 31.0 0.3 2.5 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|386000827|ref|YP_005919126.1| - 8.5e-07 28.4 0.3 0.0018 17.5 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|386000827|ref|YP_005919126.1| - 0.00062 19.0 2.6 0.015 14.5 0.0 2.8 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|386000827|ref|YP_005919126.1| - 0.0045 16.4 0.1 0.0045 16.4 0.1 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase DUF561 PF04481.12 gi|386000827|ref|YP_005919126.1| - 0.007 15.6 0.3 0.19 10.9 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF561) IGPS PF00218.21 gi|386000827|ref|YP_005919126.1| - 0.017 14.3 0.2 0.037 13.2 0.0 1.7 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|386000827|ref|YP_005919126.1| - 0.028 13.9 0.2 0.2 11.1 0.0 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein TMP-TENI PF02581.17 gi|386000827|ref|YP_005919126.1| - 0.47 9.8 4.2 2.3 7.5 0.2 2.8 2 1 1 3 3 3 0 Thiamine monophosphate synthase Pectate_lyase22 PF14583.6 gi|386000828|ref|YP_005919127.1| - 1.9e-09 36.7 2.5 0.0033 16.2 0.1 6.0 6 1 1 7 7 7 3 Oligogalacturonate lyase DPPIV_N PF00930.21 gi|386000828|ref|YP_005919127.1| - 5.3e-08 32.0 10.9 0.56 8.9 0.1 7.4 5 2 3 8 8 8 5 Dipeptidyl peptidase IV (DPP IV) N-terminal region DUF5046 PF16465.5 gi|386000828|ref|YP_005919127.1| - 0.00017 21.1 8.8 2.6 7.4 0.1 5.7 5 2 2 7 7 7 3 Domain of unknown function (DUF5046) phage_tail_N PF08400.10 gi|386000828|ref|YP_005919127.1| - 0.043 13.8 3.0 8.6 6.4 0.1 4.4 3 1 1 4 4 4 0 Prophage tail fibre N-terminal PQQ PF01011.21 gi|386000828|ref|YP_005919127.1| - 0.059 13.3 9.4 53 4.0 0.0 7.5 8 0 0 8 8 8 0 PQQ enzyme repeat DUF2606 PF10794.9 gi|386000828|ref|YP_005919127.1| - 0.32 10.8 15.9 4.6 7.0 0.1 8.1 10 2 2 12 12 12 0 Protein of unknown function (DUF2606) CsgF PF10614.9 gi|386000828|ref|YP_005919127.1| - 3.3 7.9 4.5 85 3.4 0.1 4.1 5 0 0 5 5 5 0 Type VIII secretion system (T8SS), CsgF protein MMR_HSR1_Xtn PF16897.5 gi|386000829|ref|YP_005919128.1| - 5.3e-27 93.9 0.2 1.1e-26 93.0 0.2 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|386000829|ref|YP_005919128.1| - 1.4e-21 76.7 0.0 3.7e-21 75.3 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|386000829|ref|YP_005919128.1| - 1.1e-16 60.6 0.1 3.4e-16 59.0 0.0 1.9 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.18 gi|386000829|ref|YP_005919128.1| - 3.5e-14 52.6 0.0 1.1e-13 51.0 0.0 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|386000829|ref|YP_005919128.1| - 4.8e-05 23.5 0.6 0.091 12.8 0.0 2.8 3 0 0 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 gi|386000829|ref|YP_005919128.1| - 0.00016 21.6 0.6 0.03 14.2 0.2 2.6 2 1 0 2 2 2 1 RsgA GTPase AIG1 PF04548.16 gi|386000829|ref|YP_005919128.1| - 0.01 15.2 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 0 AIG1 family ABC_tran PF00005.27 gi|386000829|ref|YP_005919128.1| - 0.037 14.5 0.9 0.076 13.5 0.0 1.9 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.6 gi|386000829|ref|YP_005919128.1| - 0.072 13.5 0.1 0.18 12.2 0.1 1.6 1 0 0 1 1 1 0 AAA ATPase domain GTP_EFTU PF00009.27 gi|386000829|ref|YP_005919128.1| - 0.072 12.6 0.1 3.9 7.0 0.0 2.7 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|386000829|ref|YP_005919128.1| - 0.083 12.3 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Ribosomal_S8e PF01201.22 gi|386000830|ref|YP_005919129.1| - 1.4e-32 112.7 2.2 1.7e-32 112.5 2.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF1922 PF09082.10 gi|386000831|ref|YP_005919130.1| - 4.9e-31 106.8 0.4 5.3e-31 106.7 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) zf-CSL PF05207.13 gi|386000831|ref|YP_005919130.1| - 0.32 10.8 1.6 0.61 9.9 0.0 1.9 1 1 1 2 2 2 0 CSL zinc finger Radical_SAM PF04055.21 gi|386000833|ref|YP_005919132.1| - 2.8e-15 57.1 0.0 7.4e-15 55.7 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|386000833|ref|YP_005919132.1| - 0.00061 20.3 0.0 0.0014 19.1 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain ChuX_HutX PF06228.13 gi|386000833|ref|YP_005919132.1| - 0.078 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Haem utilisation ChuX/HutX DUF2388 PF09498.10 gi|386000833|ref|YP_005919132.1| - 0.16 12.0 0.1 4.3 7.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2388) Orn_Arg_deC_N PF02784.16 gi|386000834|ref|YP_005919133.1| - 1.4e-60 204.7 0.0 1.9e-60 204.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|386000834|ref|YP_005919133.1| - 5.2e-25 87.5 0.0 5.7e-25 87.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|386000834|ref|YP_005919133.1| - 6.2e-14 52.2 0.1 1.2e-13 51.3 0.1 1.4 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain dCMP_cyt_deam_1 PF00383.23 gi|386000835|ref|YP_005919134.1| - 4.2e-29 100.4 1.6 5.5e-29 100.0 1.6 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|386000835|ref|YP_005919134.1| - 1.1e-18 67.3 0.1 1.5e-18 66.8 0.1 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|386000835|ref|YP_005919134.1| - 0.0024 17.9 0.2 0.0065 16.5 0.2 1.6 1 1 0 1 1 1 1 Bd3614-like deaminase APOBEC_N PF08210.11 gi|386000835|ref|YP_005919134.1| - 0.024 14.5 1.6 0.05 13.5 1.6 1.5 1 1 0 1 1 1 0 APOBEC-like N-terminal domain SNAD4 PF18750.1 gi|386000835|ref|YP_005919134.1| - 0.065 13.4 0.5 0.15 12.2 0.5 1.7 1 1 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 Inv-AAD PF18785.1 gi|386000835|ref|YP_005919134.1| - 0.1 12.5 1.4 1.3 8.9 1.4 2.6 1 1 0 1 1 1 0 Invertebrate-AID/APOBEC-deaminase zf-C3HC4 PF00097.25 gi|386000835|ref|YP_005919134.1| - 0.13 12.1 2.2 0.21 11.5 1.5 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) NAD1 PF18778.1 gi|386000835|ref|YP_005919134.1| - 0.18 11.9 1.1 0.47 10.5 1.1 1.7 1 1 0 1 1 1 0 Novel AID APOBEC clade 1 tRNA-synt_1f PF01921.18 gi|386000836|ref|YP_005919135.1| - 3.1e-124 414.6 0.0 4.2e-124 414.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|386000836|ref|YP_005919135.1| - 3.6e-07 29.3 0.0 0.002 16.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|386000836|ref|YP_005919135.1| - 0.00044 19.7 0.0 0.34 10.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Nuc_deoxyrib_tr PF05014.15 gi|386000837|ref|YP_005919136.1| - 1.9e-13 50.6 0.0 3e-13 49.9 0.0 1.3 1 1 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Nuc_deoxyri_tr2 PF15891.5 gi|386000837|ref|YP_005919136.1| - 2.6e-07 30.9 0.0 3.8e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase like Metallophos_2 PF12850.7 gi|386000838|ref|YP_005919137.1| - 3.8e-05 23.9 0.0 5.5e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|386000838|ref|YP_005919137.1| - 4.2e-05 24.1 0.0 5.1e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Epimerase_2 PF02350.19 gi|386000838|ref|YP_005919137.1| - 0.034 13.0 0.0 0.054 12.3 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Pribosyltran PF00156.27 gi|386000839|ref|YP_005919138.1| - 1.1e-09 38.0 0.1 1.4e-09 37.7 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|386000839|ref|YP_005919138.1| - 0.00047 19.6 0.0 0.00062 19.3 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|386000839|ref|YP_005919138.1| - 0.058 12.9 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase BTRD1 PF17660.1 gi|386000839|ref|YP_005919138.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial tandem repeat domain 1 DUF4112 PF13430.6 gi|386000839|ref|YP_005919138.1| - 0.18 12.1 0.0 0.28 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4112) DUF11 PF01345.18 gi|386000840|ref|YP_005919139.1| - 0.024 14.9 0.2 0.033 14.5 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|386000840|ref|YP_005919139.1| - 0.036 14.3 0.1 0.057 13.7 0.1 1.3 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Monooxygenase_B PF04744.12 gi|386000840|ref|YP_005919139.1| - 0.072 11.9 0.0 0.09 11.6 0.0 1.1 1 0 0 1 1 1 0 Monooxygenase subunit B protein Alpha_adaptinC2 PF02883.20 gi|386000840|ref|YP_005919139.1| - 0.18 12.1 0.0 0.2 12.0 0.0 1.1 1 0 0 1 1 1 0 Adaptin C-terminal domain BppU_N PF10651.9 gi|386000842|ref|YP_005919141.1| - 0.12 12.1 0.1 0.14 11.9 0.1 1.1 1 0 0 1 1 1 0 BppU N-terminal domain Met_10 PF02475.16 gi|386000843|ref|YP_005919142.1| - 2e-60 204.0 0.0 3.1e-60 203.4 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.16 gi|386000843|ref|YP_005919142.1| - 3.4e-05 23.2 0.0 4e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|386000843|ref|YP_005919142.1| - 0.0011 18.6 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|386000843|ref|YP_005919142.1| - 0.0045 16.6 0.0 0.0076 15.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|386000843|ref|YP_005919142.1| - 0.021 15.5 0.0 0.036 14.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|386000843|ref|YP_005919142.1| - 0.046 13.4 0.0 0.061 13.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PrmA PF06325.13 gi|386000843|ref|YP_005919142.1| - 0.2 11.0 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Lactamase_B_3 PF13483.6 gi|386000844|ref|YP_005919143.1| - 8.8e-18 64.7 0.2 1.1e-17 64.4 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|386000844|ref|YP_005919143.1| - 0.0016 18.0 0.1 0.002 17.7 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF21 PF01595.20 gi|386000846|ref|YP_005919145.1| - 5.5e-44 150.0 2.6 7.7e-44 149.5 2.6 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|386000846|ref|YP_005919145.1| - 2e-22 79.0 0.6 2e-22 79.0 0.6 2.5 3 0 0 3 3 3 1 Transporter associated domain CBS PF00571.28 gi|386000846|ref|YP_005919145.1| - 2.8e-11 43.7 2.2 0.00017 22.0 0.0 3.5 4 0 0 4 4 4 2 CBS domain HEPN_RES_NTD1 PF18870.1 gi|386000846|ref|YP_005919145.1| - 0.011 15.9 1.0 0.021 15.0 0.2 1.8 2 0 0 2 2 2 0 HEPN/RES N-terminal domain 1 MurJ PF03023.14 gi|386000846|ref|YP_005919145.1| - 0.029 13.0 3.4 0.041 12.5 3.4 1.1 1 0 0 1 1 1 0 Lipid II flippase MurJ RNA_pol_A_CTD PF03118.15 gi|386000846|ref|YP_005919145.1| - 0.17 11.7 2.3 5.5 6.8 0.1 3.4 3 0 0 3 3 3 0 Bacterial RNA polymerase, alpha chain C terminal domain MgtE PF01769.16 gi|386000846|ref|YP_005919145.1| - 0.99 9.8 5.2 1.7 9.0 5.2 1.3 1 0 0 1 1 1 0 Divalent cation transporter Na_H_Exchanger PF00999.21 gi|386000847|ref|YP_005919146.1| - 1.9e-55 188.2 40.9 2.4e-55 187.9 40.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.21 gi|386000847|ref|YP_005919146.1| - 5.7e-12 45.3 0.0 1e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 TrkA-C domain tRNA-synt_2c PF01411.19 gi|386000848|ref|YP_005919147.1| - 0.051 12.1 0.6 0.058 11.9 0.6 1.1 1 0 0 1 1 1 0 tRNA synthetases class II (A) peroxidase PF00141.23 gi|386000850|ref|YP_005919149.1| - 3.2e-89 298.5 0.0 8.6e-46 156.5 0.0 2.2 2 0 0 2 2 2 2 Peroxidase Auto_anti-p27 PF06677.12 gi|386000851|ref|YP_005919150.1| - 0.021 15.0 5.8 0.21 11.8 0.3 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.6 gi|386000851|ref|YP_005919150.1| - 0.068 12.9 5.5 0.48 10.2 0.1 2.6 2 1 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|386000851|ref|YP_005919150.1| - 0.095 12.6 7.0 0.14 12.1 0.8 1.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain UPF0547 PF10571.9 gi|386000851|ref|YP_005919150.1| - 0.22 11.6 9.0 2.6 8.2 1.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|386000851|ref|YP_005919150.1| - 0.24 11.0 4.2 1.1 8.9 0.7 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger PhnA_Zn_Ribbon PF08274.12 gi|386000851|ref|YP_005919150.1| - 2 8.5 8.9 0.66 10.0 0.7 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Fer4 PF00037.27 gi|386000852|ref|YP_005919151.1| - 2.4e-10 39.8 16.3 2e-06 27.4 4.1 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|386000852|ref|YP_005919151.1| - 1.2e-09 38.2 12.6 3.4e-05 23.9 1.9 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|386000852|ref|YP_005919151.1| - 1.8e-08 34.6 8.0 3.9e-08 33.5 8.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_5 PF12801.7 gi|386000852|ref|YP_005919151.1| - 3.4e-08 33.3 14.5 2e-06 27.6 4.0 3.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386000852|ref|YP_005919151.1| - 7.4e-08 32.9 12.5 0.00052 20.5 2.5 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386000852|ref|YP_005919151.1| - 1.2e-07 31.5 22.1 9.9e-05 22.3 3.3 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386000852|ref|YP_005919151.1| - 4.8e-07 29.8 8.1 0.0031 17.6 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386000852|ref|YP_005919151.1| - 3.7e-06 27.0 15.9 3.7e-06 27.0 15.9 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386000852|ref|YP_005919151.1| - 4.3e-06 26.5 18.4 0.00032 20.6 1.4 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386000852|ref|YP_005919151.1| - 7.3e-05 23.6 16.1 0.0014 19.6 2.5 2.5 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|386000852|ref|YP_005919151.1| - 0.00013 22.7 8.2 0.043 14.7 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386000852|ref|YP_005919151.1| - 0.00051 20.5 10.6 0.059 13.9 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|386000852|ref|YP_005919151.1| - 0.00074 20.0 18.6 0.15 12.6 3.8 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386000852|ref|YP_005919151.1| - 0.0008 20.2 5.5 0.0008 20.2 5.5 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|386000852|ref|YP_005919151.1| - 0.0063 16.9 21.9 0.19 12.3 5.2 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386000852|ref|YP_005919151.1| - 0.075 13.5 20.7 0.13 12.7 3.2 2.5 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386000852|ref|YP_005919151.1| - 0.73 10.6 10.6 4.1 8.2 1.4 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF2614 PF11023.8 gi|386000852|ref|YP_005919151.1| - 1.4 9.1 6.3 0.11 12.6 1.1 1.9 2 1 0 2 2 2 0 Zinc-ribbon containing domain YdjM PF04307.14 gi|386000853|ref|YP_005919152.1| - 2.1e-10 40.2 7.4 2.8e-10 39.8 7.4 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Type_ISP_C PF18135.1 gi|386000854|ref|YP_005919153.1| - 1.2e-92 310.5 0.0 1.5e-92 310.3 0.0 1.1 1 0 0 1 1 1 1 Type ISP C-terminal specificity domain N6_Mtase PF02384.16 gi|386000855|ref|YP_005919154.1| - 8.8e-10 38.3 0.0 0.0017 17.6 0.0 2.7 2 1 0 2 2 2 2 N-6 DNA Methylase UPF0020 PF01170.18 gi|386000855|ref|YP_005919154.1| - 0.0007 19.3 0.0 0.9 9.2 0.0 3.2 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 Eco57I PF07669.11 gi|386000855|ref|YP_005919154.1| - 0.029 14.9 0.0 0.049 14.1 0.0 1.4 1 0 0 1 1 1 0 Eco57I restriction-modification methylase UPRTase PF14681.6 gi|386000855|ref|YP_005919154.1| - 0.038 13.4 0.0 0.067 12.6 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Phage_tail_T PF06223.12 gi|386000855|ref|YP_005919154.1| - 0.096 13.2 0.0 0.23 12.0 0.0 1.6 1 0 0 1 1 1 0 Minor tail protein T PIN PF01850.21 gi|386000856|ref|YP_005919155.1| - 1.6e-16 60.9 0.9 1.9e-16 60.6 0.9 1.0 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|386000856|ref|YP_005919155.1| - 0.0012 18.5 0.0 0.0026 17.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) Radical_SAM PF04055.21 gi|386000857|ref|YP_005919156.1| - 4.3e-07 30.5 0.0 2.4e-06 28.0 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|386000857|ref|YP_005919156.1| - 0.0032 17.7 0.1 0.0052 17.1 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TPR_1 PF00515.28 gi|386000858|ref|YP_005919157.1| - 9.2e-187 598.2 68.3 1.8e-12 46.5 0.5 18.0 18 0 0 18 18 18 18 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386000858|ref|YP_005919157.1| - 4.6e-165 535.1 95.8 5.2e-14 51.6 1.4 17.8 2 2 16 18 18 18 17 TPR repeat TPR_2 PF07719.17 gi|386000858|ref|YP_005919157.1| - 1.5e-161 511.9 67.4 7e-10 38.3 2.5 18.0 18 0 0 18 18 18 18 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386000858|ref|YP_005919157.1| - 3.3e-129 421.3 68.1 3.1e-16 59.7 0.8 11.4 3 2 7 13 13 13 12 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386000858|ref|YP_005919157.1| - 5.8e-124 394.2 49.9 3.7e-08 33.0 0.1 18.0 18 0 0 18 18 18 17 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386000858|ref|YP_005919157.1| - 2.8e-119 381.3 49.0 7.3e-08 32.3 0.3 17.2 17 0 0 17 17 17 17 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386000858|ref|YP_005919157.1| - 1e-86 278.1 60.4 1.3e-06 28.7 0.2 17.7 2 2 16 18 18 18 17 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386000858|ref|YP_005919157.1| - 2.7e-78 258.3 38.5 2.2e-11 43.9 0.1 11.7 2 1 9 11 11 11 10 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386000858|ref|YP_005919157.1| - 4.4e-65 216.1 61.1 3.8e-09 36.9 3.2 11.8 4 4 8 13 13 13 13 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386000858|ref|YP_005919157.1| - 9.9e-54 175.5 45.8 0.011 15.7 0.1 17.4 18 0 0 18 18 17 13 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386000858|ref|YP_005919157.1| - 1.7e-47 159.4 36.6 6.1e-07 29.5 1.0 10.8 4 1 8 13 13 13 13 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386000858|ref|YP_005919157.1| - 6.6e-47 155.1 38.5 0.0059 17.2 0.6 17.6 18 0 0 18 18 18 10 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386000858|ref|YP_005919157.1| - 8.4e-40 134.9 18.7 1.6e-07 31.4 0.6 8.5 4 2 5 10 10 10 9 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|386000858|ref|YP_005919157.1| - 1.6e-38 129.5 70.6 0.0087 15.9 0.1 17.2 18 0 0 18 18 17 13 Tetratricopeptide repeat NARP1 PF12569.8 gi|386000858|ref|YP_005919157.1| - 1.4e-33 116.6 14.9 0.00035 19.6 0.0 8.8 1 1 7 10 10 10 10 NMDA receptor-regulated protein 1 TPR_3 PF07720.12 gi|386000858|ref|YP_005919157.1| - 1.1e-30 105.1 40.0 0.26 11.3 1.1 16.5 16 1 1 17 17 16 10 Tetratricopeptide repeat MIT PF04212.18 gi|386000858|ref|YP_005919157.1| - 5.2e-24 84.1 69.6 0.088 12.9 0.2 17.8 18 0 0 18 18 18 8 MIT (microtubule interacting and transport) domain ANAPC5 PF12862.7 gi|386000858|ref|YP_005919157.1| - 3.9e-19 68.5 16.3 15 5.7 0.0 15.9 8 3 9 17 17 17 0 Anaphase-promoting complex subunit 5 BTAD PF03704.17 gi|386000858|ref|YP_005919157.1| - 5.4e-17 62.6 18.9 0.00063 20.2 0.3 7.4 1 1 7 9 9 9 5 Bacterial transcriptional activator domain TPR_21 PF09976.9 gi|386000858|ref|YP_005919157.1| - 2.4e-15 56.8 55.1 0.091 12.5 0.2 14.0 2 1 15 17 17 17 7 Tetratricopeptide repeat-like domain TPR_4 PF07721.14 gi|386000858|ref|YP_005919157.1| - 1e-14 53.6 0.5 4.6 8.2 0.0 12.2 14 0 0 14 14 8 0 Tetratricopeptide repeat DUF3856 PF12968.7 gi|386000858|ref|YP_005919157.1| - 2.7e-14 53.5 17.4 1 9.4 0.0 13.3 2 1 10 12 12 12 2 Domain of Unknown Function (DUF3856) DUF5113 PF17140.4 gi|386000858|ref|YP_005919157.1| - 6.1e-14 52.1 30.4 2.1 8.1 0.0 14.4 8 4 6 16 16 16 1 Domain of unknown function (DUF5113) PPR PF01535.20 gi|386000858|ref|YP_005919157.1| - 6.8e-13 47.9 1.0 32 5.1 0.0 13.1 15 0 0 15 15 12 0 PPR repeat Fis1_TPR_C PF14853.6 gi|386000858|ref|YP_005919157.1| - 5.7e-11 42.3 32.4 1.8 8.7 0.0 15.2 15 2 2 17 17 16 1 Fis1 C-terminal tetratricopeptide repeat TPR_MalT PF17874.1 gi|386000858|ref|YP_005919157.1| - 7.3e-11 42.0 4.2 0.11 11.9 0.0 7.8 2 2 4 7 7 7 2 MalT-like TPR region Wzy_C_2 PF11846.8 gi|386000858|ref|YP_005919157.1| - 2.7e-10 40.5 28.1 0.25 11.3 0.1 9.6 3 3 8 11 11 11 4 Virulence factor membrane-bound polymerase, C-terminal SHNi-TPR PF10516.9 gi|386000858|ref|YP_005919157.1| - 1e-09 37.6 18.0 5.3 6.6 0.0 12.3 14 0 0 14 14 12 0 SHNi-TPR Rota_NSP3 PF01665.16 gi|386000858|ref|YP_005919157.1| - 3.9e-08 32.8 2.7 5.5 6.0 0.0 8.3 2 2 9 11 11 11 0 Rotavirus non-structural protein NSP3 HrpB1_HrpK PF09613.10 gi|386000858|ref|YP_005919157.1| - 6.8e-08 32.2 0.0 4.8 6.8 0.0 7.7 3 3 7 11 11 11 0 Bacterial type III secretion protein (HrpB1_HrpK) DUF627 PF04781.12 gi|386000858|ref|YP_005919157.1| - 9.6e-08 32.0 0.0 16 5.5 0.0 8.0 5 5 3 9 9 8 0 Protein of unknown function (DUF627) BPS PF08947.10 gi|386000858|ref|YP_005919157.1| - 1.1e-07 31.5 4.8 70 3.4 0.0 10.8 8 3 5 13 13 12 0 BPS (Between PH and SH2) Pyrid_ox_like PF16242.5 gi|386000858|ref|YP_005919157.1| - 2.8e-07 30.2 10.9 11 5.6 0.0 8.6 4 2 3 8 8 8 0 Pyridoxamine 5'-phosphate oxidase like TetR_C_15 PF17918.1 gi|386000858|ref|YP_005919157.1| - 4.2e-06 27.5 4.3 1.2e+02 3.5 0.0 9.3 5 3 6 11 11 11 0 Tetracyclin repressor-like, C-terminal domain NRBF2_MIT PF17169.4 gi|386000858|ref|YP_005919157.1| - 5.7e-06 26.5 5.8 45 4.4 0.0 9.2 8 3 3 11 11 8 0 MIT domain of nuclear receptor-binding factor 2 DUF2917 PF11142.8 gi|386000858|ref|YP_005919157.1| - 0.00016 21.0 0.0 13 5.2 0.0 4.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2917) Rapsyn_N PF10579.9 gi|386000858|ref|YP_005919157.1| - 0.00017 21.6 1.5 32 4.7 0.0 6.2 6 1 1 7 7 4 0 Rapsyn N-terminal myristoylation and linker region FAT PF02259.23 gi|386000858|ref|YP_005919157.1| - 0.0002 20.7 21.7 4 6.6 0.0 8.5 1 1 2 4 4 4 0 FAT domain Alkyl_sulf_dimr PF14863.6 gi|386000858|ref|YP_005919157.1| - 0.00023 21.6 9.1 7.1 7.1 0.0 7.3 4 3 1 7 7 7 0 Alkyl sulfatase dimerisation TPR_20 PF14561.6 gi|386000858|ref|YP_005919157.1| - 0.00034 20.9 22.8 5 7.5 0.8 7.9 2 1 7 11 11 11 0 Tetratricopeptide repeat PPTA PF01239.22 gi|386000858|ref|YP_005919157.1| - 0.00048 19.8 8.7 30 4.5 0.1 8.6 8 0 0 8 8 8 0 Protein prenyltransferase alpha subunit repeat MAS20 PF02064.15 gi|386000858|ref|YP_005919157.1| - 0.00059 19.9 0.2 78 3.4 0.0 8.0 6 2 6 12 12 11 0 MAS20 protein import receptor TraD PF06412.11 gi|386000858|ref|YP_005919157.1| - 0.0008 19.2 3.8 0.27 11.1 0.1 6.8 8 1 1 9 9 7 1 Conjugal transfer protein TraD SNAP PF14938.6 gi|386000858|ref|YP_005919157.1| - 0.00083 18.9 36.7 0.0016 17.9 4.5 8.2 2 1 5 8 8 7 3 Soluble NSF attachment protein, SNAP DUF1510 PF07423.11 gi|386000858|ref|YP_005919157.1| - 0.0012 19.0 20.5 9.4 6.5 0.0 10.2 2 2 9 13 13 13 0 Domain of unknown function (DUF1510) RPN7 PF10602.9 gi|386000858|ref|YP_005919157.1| - 0.0018 18.0 21.8 9.7 5.9 0.7 10.3 4 3 5 12 12 12 0 26S proteasome subunit RPN7 Imm31 PF15591.6 gi|386000858|ref|YP_005919157.1| - 0.0027 17.5 12.6 3.4 7.6 0.0 8.5 6 4 4 10 10 8 0 Immunity protein 31 4HB_MCP_1 PF12729.7 gi|386000858|ref|YP_005919157.1| - 0.015 14.9 19.2 24 4.4 0.1 10.2 8 4 3 12 12 12 0 Four helix bundle sensory module for signal transduction PPR_2 PF13041.6 gi|386000858|ref|YP_005919157.1| - 0.019 15.1 9.2 1.7e+02 2.5 0.0 8.9 11 0 0 11 11 9 0 PPR repeat family Ig_2 PF13895.6 gi|386000858|ref|YP_005919157.1| - 0.12 12.7 1.2 2.2e+02 2.3 0.0 5.6 5 2 3 8 8 4 0 Immunoglobulin domain Coatomer_E PF04733.14 gi|386000858|ref|YP_005919157.1| - 0.37 10.2 5.5 12 5.2 0.0 4.7 5 1 1 6 6 5 0 Coatomer epsilon subunit DUF5112 PF17139.4 gi|386000858|ref|YP_005919157.1| - 0.44 10.0 5.6 10 5.5 0.2 4.2 3 2 3 6 6 6 0 Domain of unknown function (DUF5112) nos_propeller_2 PF18793.1 gi|386000858|ref|YP_005919157.1| - 0.45 10.9 10.0 96 3.4 0.0 7.0 6 3 3 9 9 5 0 Nitrous oxide reductase propeller repeat 2 Big_3_4 PF13754.6 gi|386000858|ref|YP_005919157.1| - 3.8 7.3 12.8 72 3.2 0.0 7.1 4 3 5 10 10 8 0 Domain of unknown function Alk_phosphatase PF00245.20 gi|386000859|ref|YP_005919158.1| - 5.1e-93 312.3 1.0 3.4e-86 289.8 1.5 2.1 2 0 0 2 2 2 2 Alkaline phosphatase Metalloenzyme PF01676.18 gi|386000859|ref|YP_005919158.1| - 1e-07 31.6 0.0 1.9e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|386000859|ref|YP_005919158.1| - 0.00046 19.7 0.0 0.006 16.0 0.0 2.2 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|386000859|ref|YP_005919158.1| - 0.055 13.1 0.3 0.21 11.1 0.3 1.8 1 1 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase tRNA_bind_4 PF18490.1 gi|386000862|ref|YP_005919161.1| - 8.7e-55 184.9 0.1 1.3e-54 184.4 0.1 1.2 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|386000862|ref|YP_005919161.1| - 6e-11 42.6 0.0 9.3e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|386000862|ref|YP_005919161.1| - 0.0019 17.7 0.0 0.0039 16.7 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) DHHA1 PF02272.19 gi|386000864|ref|YP_005919163.1| - 6.9e-14 52.4 0.2 1.3e-13 51.5 0.2 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|386000864|ref|YP_005919163.1| - 0.07 13.4 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 DHH family Ribosomal_S15 PF00312.22 gi|386000865|ref|YP_005919164.1| - 3.2e-17 62.5 1.9 4.5e-17 62.0 1.9 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.12 gi|386000865|ref|YP_005919164.1| - 5.5e-08 32.7 0.0 7.2e-07 29.2 0.0 2.4 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Remorin_C PF03763.13 gi|386000865|ref|YP_005919164.1| - 0.022 14.6 0.2 0.032 14.1 0.2 1.2 1 0 0 1 1 1 0 Remorin, C-terminal region DUF116 PF01976.17 gi|386000866|ref|YP_005919165.1| - 4.5e-46 156.2 0.0 5.5e-46 155.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 UPF0182 PF03699.13 gi|386000867|ref|YP_005919166.1| - 2.5e-274 912.1 1.4 3.7e-274 911.6 1.4 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) Fer4 PF00037.27 gi|386000868|ref|YP_005919167.1| - 8e-19 66.6 16.7 2e-09 36.9 4.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386000868|ref|YP_005919167.1| - 5.8e-13 48.3 17.2 2.3e-06 27.4 4.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386000868|ref|YP_005919167.1| - 3.4e-12 45.7 15.6 5.6e-07 29.3 3.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|386000868|ref|YP_005919167.1| - 1.1e-11 44.7 12.9 1.4e-11 44.3 12.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386000868|ref|YP_005919167.1| - 7.2e-11 42.5 13.9 1.1e-10 41.9 14.0 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386000868|ref|YP_005919167.1| - 7.5e-11 42.0 13.9 1e-10 41.6 13.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386000868|ref|YP_005919167.1| - 1.2e-10 41.4 14.7 1.3e-10 41.3 14.7 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386000868|ref|YP_005919167.1| - 2.4e-10 41.2 13.5 1.4e-05 25.9 2.0 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|386000868|ref|YP_005919167.1| - 3.4e-07 30.2 15.9 0.00063 20.1 5.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|386000868|ref|YP_005919167.1| - 5.2e-07 30.1 17.4 0.00033 21.1 4.7 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|386000868|ref|YP_005919167.1| - 1.7e-06 28.4 15.9 0.00058 20.3 3.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386000868|ref|YP_005919167.1| - 2.2e-06 28.2 18.6 0.0016 19.2 5.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386000868|ref|YP_005919167.1| - 1.1e-05 25.7 17.1 0.0015 18.9 4.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386000868|ref|YP_005919167.1| - 3.9e-05 24.3 15.5 0.00011 22.9 2.3 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|386000868|ref|YP_005919167.1| - 0.00032 21.5 8.7 0.072 13.9 1.6 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|386000868|ref|YP_005919167.1| - 0.0034 17.5 7.1 0.0039 17.3 7.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|386000868|ref|YP_005919167.1| - 0.0035 17.5 15.4 0.033 14.4 3.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Furin-like_2 PF15913.5 gi|386000868|ref|YP_005919167.1| - 0.029 14.5 6.1 0.056 13.6 6.1 1.4 1 1 0 1 1 1 0 Furin-like repeat, cysteine-rich zf-C2H2_11 PF16622.5 gi|386000868|ref|YP_005919167.1| - 4.7 7.1 8.1 4.1 7.3 0.9 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type NRDD PF13597.6 gi|386000869|ref|YP_005919168.1| - 1.1e-148 496.5 0.0 1.9e-83 281.2 0.0 2.1 2 0 0 2 2 2 2 Anaerobic ribonucleoside-triphosphate reductase Intein_splicing PF14890.6 gi|386000869|ref|YP_005919168.1| - 3.7e-17 62.5 0.0 7.9e-17 61.5 0.0 1.5 1 0 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|386000869|ref|YP_005919168.1| - 0.0003 21.1 0.0 0.075 13.4 0.0 2.7 2 0 0 2 2 2 2 LAGLIDADG-like domain TackOD1 PF18551.1 gi|386000869|ref|YP_005919168.1| - 0.11 12.2 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 FMN_red PF03358.15 gi|386000870|ref|YP_005919169.1| - 1.9e-31 108.9 0.0 2.3e-31 108.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|386000870|ref|YP_005919169.1| - 1.1e-07 31.7 0.0 1.5e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold 3-dmu-9_3-mt PF06983.13 gi|386000871|ref|YP_005919170.1| - 7.9e-32 110.2 0.1 1.4e-29 103.0 0.1 2.1 1 1 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase PSCyt1 PF07635.11 gi|386000871|ref|YP_005919170.1| - 0.054 14.1 0.0 0.095 13.3 0.0 1.4 1 0 0 1 1 1 0 Planctomycete cytochrome C Filo_VP35 PF02097.15 gi|386000871|ref|YP_005919170.1| - 0.081 12.0 0.0 0.091 11.8 0.0 1.1 1 0 0 1 1 1 0 Filoviridae VP35 Ribonuc_L-PSP PF01042.21 gi|386000872|ref|YP_005919171.1| - 6.5e-20 71.3 0.0 8.3e-20 71.0 0.0 1.1 1 0 0 1 1 1 1 Endoribonuclease L-PSP NucS PF01939.16 gi|386000873|ref|YP_005919172.1| - 0.02 14.3 0.0 0.034 13.5 0.0 1.3 1 0 0 1 1 1 0 Endonuclease NucS AbiEii PF08843.11 gi|386000874|ref|YP_005919173.1| - 0.0075 16.2 0.0 0.034 14.1 0.0 1.9 1 1 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system Ribonuc_L-PSP PF01042.21 gi|386000875|ref|YP_005919174.1| - 0.018 15.1 0.0 0.019 15.0 0.0 1.1 1 0 0 1 1 1 0 Endoribonuclease L-PSP XhoI PF04555.13 gi|386000876|ref|YP_005919175.1| - 4.1e-98 326.9 0.0 5.2e-98 326.6 0.0 1.0 1 0 0 1 1 1 1 Restriction endonuclease XhoI N6_N4_Mtase PF01555.18 gi|386000877|ref|YP_005919176.1| - 1.1e-36 126.7 0.0 1.6e-36 126.2 0.0 1.2 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|386000877|ref|YP_005919176.1| - 0.004 16.9 0.0 0.037 13.7 0.0 2.1 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|386000877|ref|YP_005919176.1| - 0.0078 16.8 0.0 0.21 12.2 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386000877|ref|YP_005919176.1| - 0.097 13.4 0.0 12 6.7 0.0 2.6 2 1 0 2 2 2 0 Methyltransferase domain Met_10 PF02475.16 gi|386000877|ref|YP_005919176.1| - 0.16 11.7 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein ALAD PF00490.21 gi|386000878|ref|YP_005919177.1| - 1.7e-145 484.1 0.1 1.9e-145 483.9 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Shikimate_DH PF01488.20 gi|386000879|ref|YP_005919178.1| - 2.4e-39 134.5 0.1 4.9e-39 133.5 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|386000879|ref|YP_005919178.1| - 2.1e-35 121.7 0.0 3.7e-35 120.8 0.0 1.4 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|386000879|ref|YP_005919178.1| - 8.4e-21 74.2 0.8 1.8e-20 73.2 0.8 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|386000879|ref|YP_005919178.1| - 3.9e-05 24.2 0.5 0.00033 21.2 0.0 2.7 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|386000879|ref|YP_005919178.1| - 0.061 12.7 0.0 0.16 11.3 0.0 1.7 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|386000879|ref|YP_005919178.1| - 0.18 11.1 0.0 2.2 7.6 0.0 2.5 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CysG_dimeriser PF10414.9 gi|386000880|ref|YP_005919179.1| - 9.1e-07 28.5 0.2 1.7e-06 27.7 0.2 1.5 1 0 0 1 1 1 1 Sirohaem synthase dimerisation region Sirohm_synth_M PF14824.6 gi|386000880|ref|YP_005919179.1| - 2.6e-05 23.5 0.1 4.3e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central AsnC_trans_reg2 PF17805.1 gi|386000882|ref|YP_005919181.1| - 1e-31 108.9 0.0 1.7e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|386000882|ref|YP_005919181.1| - 1.1e-06 28.4 1.2 0.00026 20.8 0.8 2.5 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|386000882|ref|YP_005919181.1| - 0.012 15.2 0.4 0.29 10.7 0.2 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF3015 PF11220.8 gi|386000882|ref|YP_005919181.1| - 0.082 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3015) NosD PF05048.13 gi|386000883|ref|YP_005919182.1| - 8.4e-77 257.7 60.6 7.5e-22 77.8 2.6 5.8 1 1 5 6 6 6 6 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386000883|ref|YP_005919182.1| - 3.2e-56 189.5 57.3 1.4e-16 60.8 9.3 5.1 2 2 3 5 5 5 5 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|386000883|ref|YP_005919182.1| - 0.0014 18.5 19.2 0.42 10.4 0.3 5.6 3 2 3 6 6 6 4 Pectate lyase superfamily protein zf-DNL PF05180.12 gi|386000883|ref|YP_005919182.1| - 0.76 9.8 2.1 7.1 6.6 0.0 2.6 3 0 0 3 3 3 0 DNL zinc finger Response_reg PF00072.24 gi|386000884|ref|YP_005919183.1| - 6.2e-18 65.0 0.0 1e-17 64.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|386000884|ref|YP_005919183.1| - 2.5e-08 34.1 0.0 6.4e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|386000884|ref|YP_005919183.1| - 9.3e-08 32.1 0.0 2.4e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|386000884|ref|YP_005919183.1| - 6.1e-07 29.3 0.0 1.7e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|386000884|ref|YP_005919183.1| - 1.3e-06 28.6 0.0 2.8e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|386000884|ref|YP_005919183.1| - 0.0001 22.5 0.0 0.00024 21.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold AAA_18 PF13238.6 gi|386000885|ref|YP_005919184.1| - 4.7e-20 72.5 0.0 6.4e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|386000885|ref|YP_005919184.1| - 0.00033 20.8 0.1 0.82 9.8 0.1 2.4 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|386000885|ref|YP_005919184.1| - 0.0033 17.9 0.6 0.014 15.8 0.5 2.1 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|386000885|ref|YP_005919184.1| - 0.0044 16.4 0.0 0.0058 16.0 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_24 PF13479.6 gi|386000885|ref|YP_005919184.1| - 0.018 14.8 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|386000885|ref|YP_005919184.1| - 0.026 14.8 4.6 0.12 12.6 4.6 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|386000885|ref|YP_005919184.1| - 0.03 14.8 0.0 0.054 13.9 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|386000885|ref|YP_005919184.1| - 0.082 13.3 1.1 0.29 11.5 1.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain DUF1884 PF08967.10 gi|386000885|ref|YP_005919184.1| - 0.085 13.1 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) AAA_22 PF13401.6 gi|386000885|ref|YP_005919184.1| - 0.13 12.6 0.1 0.3 11.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|386000885|ref|YP_005919184.1| - 0.61 9.6 3.4 0.4 10.2 0.6 2.0 2 1 1 3 3 3 0 AAA domain Aminotran_1_2 PF00155.21 gi|386000886|ref|YP_005919185.1| - 2.6e-43 148.6 0.0 5.5e-43 147.5 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|386000886|ref|YP_005919185.1| - 0.0046 15.9 0.0 0.0069 15.3 0.0 1.1 1 0 0 1 1 1 1 Allinase DUF4051 PF13260.6 gi|386000886|ref|YP_005919185.1| - 0.036 13.8 0.1 0.082 12.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) Cys_Met_Meta_PP PF01053.20 gi|386000886|ref|YP_005919185.1| - 0.32 9.5 0.0 0.45 9.0 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|386000887|ref|YP_005919186.1| - 1.5e-107 359.8 0.0 2.7e-107 359.0 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-III DegT_DnrJ_EryC1 PF01041.17 gi|386000887|ref|YP_005919186.1| - 0.028 13.7 0.0 0.042 13.1 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Lactamase_B PF00753.27 gi|386000888|ref|YP_005919187.1| - 1.1e-33 116.9 1.1 1.3e-33 116.7 1.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|386000888|ref|YP_005919187.1| - 8.2e-10 38.5 0.0 1.2e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|386000888|ref|YP_005919187.1| - 0.00039 19.9 0.0 0.00058 19.4 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|386000888|ref|YP_005919187.1| - 0.066 13.1 0.0 0.13 12.2 0.0 1.6 2 0 0 2 2 2 0 Beta-lactamase superfamily domain ParE_toxin PF05016.15 gi|386000890|ref|YP_005919189.1| - 9.1e-09 35.8 0.3 1.1e-08 35.6 0.3 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|386000890|ref|YP_005919189.1| - 7.9e-06 25.8 0.1 1e-05 25.4 0.1 1.3 1 1 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system YafQ_toxin PF15738.5 gi|386000890|ref|YP_005919189.1| - 0.00032 20.9 0.1 0.00044 20.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial toxin of type II toxin-antitoxin system, YafQ DUF3014 PF11219.8 gi|386000890|ref|YP_005919189.1| - 0.084 13.1 0.0 0.093 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3014) RPAP3_C PF13877.6 gi|386000890|ref|YP_005919189.1| - 0.1 13.1 0.0 0.1 13.1 0.0 1.2 1 0 0 1 1 1 0 Potential Monad-binding region of RPAP3 Pea-VEAacid PF08111.11 gi|386000890|ref|YP_005919189.1| - 0.11 12.8 0.2 0.31 11.4 0.2 1.8 1 0 0 1 1 1 0 Pea-VEAacid family GyrI-like PF06445.15 gi|386000891|ref|YP_005919190.1| - 1.2e-20 74.4 0.1 1.3e-20 74.3 0.1 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|386000891|ref|YP_005919190.1| - 1.4e-07 31.8 0.0 1.6e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Integron-associated effector binding protein ICMT PF04140.14 gi|386000893|ref|YP_005919192.1| - 5.3e-15 55.6 0.1 1.1e-14 54.6 0.1 1.5 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PEMT PF04191.13 gi|386000893|ref|YP_005919192.1| - 8.4e-09 35.8 0.0 1.4e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Phospholipid methyltransferase DUF1295 PF06966.12 gi|386000893|ref|YP_005919192.1| - 9.7e-06 25.3 0.1 1.1e-05 25.1 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) NnrU PF07298.11 gi|386000893|ref|YP_005919192.1| - 0.0002 21.0 2.7 0.0002 21.0 2.7 1.8 1 1 1 2 2 2 1 NnrU protein ERG4_ERG24 PF01222.17 gi|386000893|ref|YP_005919192.1| - 0.11 11.3 0.0 0.18 10.5 0.0 1.5 1 1 0 1 1 1 0 Ergosterol biosynthesis ERG4/ERG24 family Lactamase_B PF00753.27 gi|386000894|ref|YP_005919193.1| - 2.4e-32 112.6 1.7 2.7e-32 112.4 1.7 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|386000894|ref|YP_005919193.1| - 1.7e-08 34.2 0.1 3.9e-08 33.0 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|386000894|ref|YP_005919193.1| - 0.015 14.8 0.1 0.02 14.3 0.1 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain CheB_methylest PF01339.17 gi|386000894|ref|YP_005919193.1| - 0.019 14.7 0.3 0.032 14.0 0.3 1.4 1 0 0 1 1 1 0 CheB methylesterase ThiC_Rad_SAM PF01964.18 gi|386000895|ref|YP_005919194.1| - 2.4e-170 566.9 0.0 2.7e-170 566.7 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family AbiEi_4 PF13338.6 gi|386000895|ref|YP_005919194.1| - 0.037 14.2 0.0 0.15 12.2 0.0 2.1 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin AMMECR1 PF01871.17 gi|386000896|ref|YP_005919195.1| - 1.1e-48 165.0 0.0 1.3e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Glucos_trans_II PF14264.6 gi|386000897|ref|YP_005919196.1| - 3.4 6.9 6.4 0.67 9.2 1.7 2.0 2 1 0 2 2 2 0 Glucosyl transferase GtrII Rubrerythrin PF02915.17 gi|386000898|ref|YP_005919197.1| - 1.6e-22 80.3 12.9 2.3e-21 76.7 12.9 2.0 1 1 0 1 1 1 1 Rubrerythrin Haem_oxygenas_2 PF14518.6 gi|386000898|ref|YP_005919197.1| - 0.0037 17.1 1.4 0.45 10.3 1.7 2.1 2 0 0 2 2 2 1 Iron-containing redox enzyme Ferritin PF00210.24 gi|386000898|ref|YP_005919197.1| - 0.0088 16.0 6.1 0.021 14.7 6.1 1.6 1 1 0 1 1 1 1 Ferritin-like domain NRDD PF13597.6 gi|386000898|ref|YP_005919197.1| - 0.013 14.3 0.3 0.019 13.8 0.3 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-nanos PF05741.13 gi|386000898|ref|YP_005919197.1| - 0.061 13.6 0.3 12 6.2 0.1 2.7 2 0 0 2 2 2 0 Nanos RNA binding domain zf-C2H2_3 PF13878.6 gi|386000898|ref|YP_005919197.1| - 0.081 12.8 0.8 4 7.4 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO RecR PF02132.15 gi|386000898|ref|YP_005919197.1| - 0.091 12.4 0.5 0.22 11.1 0.5 1.6 1 0 0 1 1 1 0 RecR protein Rubredoxin PF00301.20 gi|386000898|ref|YP_005919197.1| - 0.12 12.4 2.2 12 6.0 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin DNA_ligase_ZBD PF03119.16 gi|386000898|ref|YP_005919197.1| - 0.14 12.2 9.7 0.52 10.4 2.0 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|386000898|ref|YP_005919197.1| - 0.18 11.8 1.1 0.51 10.3 1.1 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf_CopZ PF18423.1 gi|386000898|ref|YP_005919197.1| - 0.19 11.7 0.7 3.8 7.5 0.1 2.4 2 0 0 2 2 2 0 Zinc binding domain zf-C2H2_9 PF16293.5 gi|386000898|ref|YP_005919197.1| - 0.21 11.5 0.7 12 5.8 0.0 2.5 2 0 0 2 2 2 0 C2H2 type zinc-finger (1 copy) zf-H2C2_2 PF13465.6 gi|386000898|ref|YP_005919197.1| - 0.24 11.9 1.0 3.1 8.4 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-FPG_IleRS PF06827.14 gi|386000898|ref|YP_005919197.1| - 0.34 10.8 3.9 3.6 7.5 0.2 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Prim_Zn_Ribbon PF08273.12 gi|386000898|ref|YP_005919197.1| - 1.2 9.5 7.8 1.3 9.4 1.4 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-RRN7 PF11781.8 gi|386000898|ref|YP_005919197.1| - 1.5 8.6 4.8 4 7.2 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_Tnp_IS1595 PF12760.7 gi|386000898|ref|YP_005919197.1| - 3.6 7.6 5.3 11 6.1 0.3 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PRK PF00485.18 gi|386000899|ref|YP_005919198.1| - 1.8e-41 142.1 0.0 2.8e-41 141.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|386000899|ref|YP_005919198.1| - 0.00057 20.4 0.0 0.00087 19.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|386000899|ref|YP_005919198.1| - 0.0037 17.2 0.0 0.0061 16.6 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|386000899|ref|YP_005919198.1| - 0.0065 16.2 0.0 0.0091 15.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain zf-CGNR PF11706.8 gi|386000899|ref|YP_005919198.1| - 0.0076 16.1 0.2 0.015 15.1 0.2 1.4 1 0 0 1 1 1 1 CGNR zinc finger AAA_16 PF13191.6 gi|386000899|ref|YP_005919198.1| - 0.0089 16.4 0.0 0.016 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|386000899|ref|YP_005919198.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|386000899|ref|YP_005919198.1| - 0.024 13.9 0.0 0.043 13.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|386000899|ref|YP_005919198.1| - 0.026 15.0 0.0 0.049 14.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 gi|386000899|ref|YP_005919198.1| - 0.027 14.6 0.0 0.051 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|386000899|ref|YP_005919198.1| - 0.029 14.6 0.0 0.051 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|386000899|ref|YP_005919198.1| - 0.035 13.8 0.1 2.2 8.0 0.0 2.1 2 0 0 2 2 2 0 Cytidylate kinase CbiA PF01656.23 gi|386000899|ref|YP_005919198.1| - 0.065 13.3 0.1 0.14 12.3 0.1 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NB-ARC PF00931.22 gi|386000899|ref|YP_005919198.1| - 0.078 12.1 0.1 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|386000899|ref|YP_005919198.1| - 0.08 13.4 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|386000899|ref|YP_005919198.1| - 0.14 10.8 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 gi|386000899|ref|YP_005919198.1| - 0.14 11.9 0.0 0.39 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|386000899|ref|YP_005919198.1| - 0.15 11.9 0.1 0.26 11.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Antibiotic_NAT PF02522.14 gi|386000900|ref|YP_005919199.1| - 0.053 13.3 0.0 0.067 13.0 0.0 1.1 1 0 0 1 1 1 0 Aminoglycoside 3-N-acetyltransferase DUF1743 PF08489.11 gi|386000902|ref|YP_005919201.1| - 5.3e-42 142.5 0.0 1e-41 141.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|386000902|ref|YP_005919201.1| - 0.015 15.3 0.0 0.036 14.1 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.11 gi|386000902|ref|YP_005919201.1| - 0.087 12.8 0.4 0.17 11.8 0.4 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.6 gi|386000902|ref|YP_005919201.1| - 0.28 10.6 2.0 0.54 9.6 2.0 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|386000902|ref|YP_005919201.1| - 0.42 10.6 3.8 0.87 9.6 3.8 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|386000902|ref|YP_005919201.1| - 0.73 9.8 9.0 1.5 8.8 9.0 1.6 1 0 0 1 1 1 0 SprT-like zinc ribbon domain DHHA2 PF02833.14 gi|386000903|ref|YP_005919202.1| - 3.1e-23 82.5 0.3 5.5e-23 81.7 0.3 1.4 1 0 0 1 1 1 1 DHHA2 domain DHH PF01368.20 gi|386000903|ref|YP_005919202.1| - 1.2e-19 70.4 0.1 2e-19 69.7 0.1 1.4 1 0 0 1 1 1 1 DHH family CHASE2 PF05226.11 gi|386000903|ref|YP_005919202.1| - 0.081 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 CHASE2 domain DSBA PF01323.20 gi|386000903|ref|YP_005919202.1| - 0.093 12.5 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 DSBA-like thioredoxin domain Thymidylate_kin PF02223.17 gi|386000904|ref|YP_005919203.1| - 1.1e-31 109.9 0.0 1.4e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.6 gi|386000904|ref|YP_005919203.1| - 0.0057 16.8 0.1 0.042 14.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|386000904|ref|YP_005919203.1| - 0.037 14.4 0.0 0.22 12.0 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|386000904|ref|YP_005919203.1| - 0.054 13.8 0.0 0.42 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|386000904|ref|YP_005919203.1| - 0.2 11.6 0.0 0.46 10.4 0.0 1.6 2 0 0 2 2 2 0 NACHT domain MAF_flag10 PF01973.18 gi|386000905|ref|YP_005919204.1| - 3.6e-25 88.6 0.0 1.6e-24 86.6 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|386000905|ref|YP_005919204.1| - 0.027 14.5 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain NIR_SIR PF01077.22 gi|386000907|ref|YP_005919206.1| - 2.9e-19 69.1 0.0 5.3e-19 68.3 0.0 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|386000907|ref|YP_005919206.1| - 8.9e-14 51.1 0.0 1.7e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|386000907|ref|YP_005919206.1| - 1.7e-13 49.8 16.4 2.8e-07 30.1 4.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386000907|ref|YP_005919206.1| - 3.1e-12 46.0 17.9 2.7e-07 30.4 2.9 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386000907|ref|YP_005919206.1| - 2.1e-09 36.9 14.5 0.00011 22.1 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386000907|ref|YP_005919206.1| - 1e-08 35.2 13.3 0.00033 20.7 2.8 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386000907|ref|YP_005919206.1| - 1.2e-08 35.4 15.1 0.00079 20.0 7.6 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386000907|ref|YP_005919206.1| - 3.8e-08 33.3 25.3 6e-06 26.3 15.3 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386000907|ref|YP_005919206.1| - 4.1e-07 30.1 12.6 9.4e-07 28.9 12.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386000907|ref|YP_005919206.1| - 3.9e-05 24.3 21.5 0.023 15.6 6.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386000907|ref|YP_005919206.1| - 4.5e-05 23.8 11.1 0.0064 16.9 0.1 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386000907|ref|YP_005919206.1| - 0.00019 22.1 12.4 0.035 14.8 2.0 2.8 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|386000907|ref|YP_005919206.1| - 0.00061 20.6 11.2 0.081 13.8 2.2 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386000907|ref|YP_005919206.1| - 0.0011 19.3 19.9 0.023 15.2 4.6 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|386000907|ref|YP_005919206.1| - 0.019 15.5 13.3 0.053 14.1 0.2 3.2 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|386000907|ref|YP_005919206.1| - 0.025 15.5 14.3 1.1 10.3 3.4 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|386000907|ref|YP_005919206.1| - 0.13 12.8 17.5 0.34 11.5 2.5 2.7 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|386000907|ref|YP_005919206.1| - 0.35 11.1 12.7 0.96 9.7 12.7 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain ERM PF00769.19 gi|386000908|ref|YP_005919207.1| - 1 9.1 48.7 2.8 7.7 28.2 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF5344 PF17279.2 gi|386000908|ref|YP_005919207.1| - 1.9 9.1 20.6 0.35 11.5 3.9 3.4 3 1 0 3 3 3 0 Family of unknown function (DUF5344) KASH_CCD PF14662.6 gi|386000908|ref|YP_005919207.1| - 2.1 8.1 34.7 0.99 9.2 8.6 3.2 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH DUF1771 PF08590.10 gi|386000908|ref|YP_005919207.1| - 4.5 7.7 22.4 3.3 8.2 5.8 4.6 2 2 1 3 3 3 0 Domain of unknown function (DUF1771) Lactamase_B_3 PF13483.6 gi|386000909|ref|YP_005919208.1| - 9.1e-25 87.4 0.0 1.1e-24 87.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|386000909|ref|YP_005919208.1| - 6.6e-23 81.3 0.2 8.3e-23 81.0 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|386000909|ref|YP_005919208.1| - 7.2e-12 45.7 2.3 1.2e-11 45.1 2.4 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily CGI-121 PF08617.10 gi|386000910|ref|YP_005919209.1| - 1e-08 35.5 0.0 5.6e-08 33.1 0.0 1.8 1 1 0 1 1 1 1 Kinase binding protein CGI-121 RAG1 PF12940.7 gi|386000910|ref|YP_005919209.1| - 0.17 9.9 0.0 0.19 9.8 0.0 1.1 1 0 0 1 1 1 0 Recombination-activation protein 1 (RAG1), recombinase RC-P840_PscD PF10657.9 gi|386000910|ref|YP_005919209.1| - 0.22 11.6 0.0 0.31 11.2 0.0 1.2 1 0 0 1 1 1 0 Photosystem P840 reaction centre protein PscD DUF2150 PF09920.9 gi|386000911|ref|YP_005919210.1| - 2.4e-65 220.0 0.4 2.8e-65 219.8 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Peptidase_M24 PF00557.24 gi|386000912|ref|YP_005919211.1| - 1.3e-38 132.8 0.0 1.4e-38 132.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.24 gi|386000913|ref|YP_005919212.1| - 8.3e-39 133.4 0.0 1e-38 133.1 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 PcrB PF01884.17 gi|386000914|ref|YP_005919213.1| - 1.8e-62 210.8 0.0 2.1e-62 210.5 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|386000914|ref|YP_005919213.1| - 0.0002 20.9 0.1 0.00041 19.9 0.0 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|386000914|ref|YP_005919213.1| - 0.023 13.7 4.2 0.029 13.4 0.3 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Pyr_redox_3 PF13738.6 gi|386000914|ref|YP_005919213.1| - 0.075 12.3 0.1 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DHO_dh PF01180.21 gi|386000914|ref|YP_005919213.1| - 0.078 12.2 0.3 0.13 11.5 0.3 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase LEP503 PF15221.6 gi|386000914|ref|YP_005919213.1| - 0.17 12.3 0.1 0.6 10.5 0.1 2.0 1 1 0 1 1 1 0 Lens epithelial cell protein LEP503 NanE PF04131.14 gi|386000914|ref|YP_005919213.1| - 0.17 11.0 3.5 0.59 9.3 0.3 2.3 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Ribul_P_3_epim PF00834.19 gi|386000914|ref|YP_005919213.1| - 0.23 10.8 0.1 0.38 10.1 0.1 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family ThiG PF05690.14 gi|386000914|ref|YP_005919213.1| - 0.44 9.8 4.8 1.1 8.5 0.8 2.2 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG malic PF00390.19 gi|386000915|ref|YP_005919214.1| - 2.3e-31 109.0 0.0 1.4e-28 99.9 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|386000915|ref|YP_005919214.1| - 7.1e-22 77.9 4.4 2.5e-20 72.8 4.4 2.6 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain FAD_binding_3 PF01494.19 gi|386000915|ref|YP_005919214.1| - 0.044 13.0 0.2 0.06 12.6 0.2 1.2 1 0 0 1 1 1 0 FAD binding domain ELFV_dehydrog PF00208.21 gi|386000915|ref|YP_005919214.1| - 0.054 13.2 0.2 0.11 12.2 0.2 1.6 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TraC PF07820.12 gi|386000915|ref|YP_005919214.1| - 0.065 13.6 0.9 0.15 12.4 0.9 1.6 1 0 0 1 1 1 0 TraC-like protein AlaDh_PNT_C PF01262.21 gi|386000915|ref|YP_005919214.1| - 0.18 11.0 3.0 0.49 9.6 3.0 1.7 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Acetyltransf_1 PF00583.25 gi|386000916|ref|YP_005919215.1| - 2.3e-08 34.3 0.0 3e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|386000916|ref|YP_005919215.1| - 7.1e-08 32.4 0.0 7.7e-07 29.1 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|386000916|ref|YP_005919215.1| - 1.5e-05 25.4 0.2 4.3e-05 23.8 0.0 1.7 1 1 0 2 2 2 1 Acetyltransferase (GNAT) domain NYN PF01936.18 gi|386000917|ref|YP_005919216.1| - 0.04 14.4 0.0 0.049 14.1 0.0 1.1 1 0 0 1 1 1 0 NYN domain Malic_M PF03949.15 gi|386000918|ref|YP_005919217.1| - 6.8e-12 45.2 0.1 2.1e-10 40.4 0.1 2.0 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain AlaDh_PNT_C PF01262.21 gi|386000918|ref|YP_005919217.1| - 0.0062 15.9 0.1 0.012 15.0 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NYN PF01936.18 gi|386000919|ref|YP_005919218.1| - 2.6e-30 105.9 0.0 3.1e-30 105.6 0.0 1.0 1 0 0 1 1 1 1 NYN domain FUR PF01475.19 gi|386000920|ref|YP_005919219.1| - 1.2e-28 99.7 0.0 1.5e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family AhpC-TSA PF00578.21 gi|386000921|ref|YP_005919220.1| - 5.8e-29 100.5 0.0 1.6e-28 99.1 0.0 1.6 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.10 gi|386000921|ref|YP_005919220.1| - 2.4e-11 43.5 0.0 3.5e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|386000921|ref|YP_005919220.1| - 7e-11 41.8 0.6 1.1e-10 41.1 0.6 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|386000921|ref|YP_005919220.1| - 0.059 13.5 0.0 0.069 13.3 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme ABM PF03992.16 gi|386000922|ref|YP_005919221.1| - 0.011 15.9 0.1 0.013 15.5 0.1 1.2 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase Sod_Fe_C PF02777.18 gi|386000923|ref|YP_005919222.1| - 4.3e-33 113.5 0.2 6.9e-33 112.9 0.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|386000923|ref|YP_005919222.1| - 4.9e-30 103.8 0.3 8e-30 103.1 0.3 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain DLH PF01738.18 gi|386000924|ref|YP_005919223.1| - 6.9e-28 97.7 0.0 1.1e-25 90.5 0.0 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|386000924|ref|YP_005919223.1| - 1.1e-09 38.1 0.0 4.1e-06 26.4 0.0 2.1 1 1 1 2 2 2 2 Prolyl oligopeptidase family Chlorophyllase2 PF12740.7 gi|386000924|ref|YP_005919223.1| - 0.0049 15.8 0.0 0.0071 15.3 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Chlorophyllase PF07224.11 gi|386000924|ref|YP_005919223.1| - 0.01 14.9 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase Abhydrolase_3 PF07859.13 gi|386000924|ref|YP_005919223.1| - 0.038 13.8 0.0 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|386000924|ref|YP_005919223.1| - 0.059 12.6 0.0 1.8 7.8 0.0 2.1 2 0 0 2 2 2 0 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|386000924|ref|YP_005919223.1| - 0.064 13.4 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein BAAT_C PF08840.11 gi|386000924|ref|YP_005919223.1| - 0.096 12.6 0.0 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal TraA PF05513.11 gi|386000925|ref|YP_005919224.1| - 0.25 11.7 0.0 0.31 11.4 0.0 1.2 1 0 0 1 1 1 0 TraA Thymidylat_synt PF00303.19 gi|386000926|ref|YP_005919225.1| - 3e-19 69.2 0.0 4.3e-19 68.7 0.0 1.2 1 1 0 1 1 1 1 Thymidylate synthase Myb_DNA-binding PF00249.31 gi|386000926|ref|YP_005919225.1| - 0.14 12.4 0.1 0.39 11.0 0.0 1.8 2 0 0 2 2 2 0 Myb-like DNA-binding domain Hjc PF01870.18 gi|386000927|ref|YP_005919226.1| - 0.022 14.8 0.0 0.048 13.6 0.0 1.6 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Methyltransf_31 PF13847.6 gi|386000928|ref|YP_005919227.1| - 9.2e-07 28.8 0.0 1.3e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|386000928|ref|YP_005919227.1| - 2.1e-06 27.2 0.0 3e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.6 gi|386000928|ref|YP_005919227.1| - 8.5e-06 26.4 0.0 1.2e-05 25.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|386000928|ref|YP_005919227.1| - 1.1e-05 25.0 0.0 1.4e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|386000928|ref|YP_005919227.1| - 5.2e-05 23.1 0.0 5.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|386000928|ref|YP_005919227.1| - 0.00017 21.4 0.0 0.00022 21.0 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|386000928|ref|YP_005919227.1| - 0.0002 21.9 0.0 0.00033 21.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|386000928|ref|YP_005919227.1| - 0.0021 17.6 0.0 0.003 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|386000928|ref|YP_005919227.1| - 0.017 14.8 0.0 0.024 14.3 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DOT1 PF08123.13 gi|386000928|ref|YP_005919227.1| - 0.054 13.0 0.0 0.074 12.6 0.0 1.1 1 0 0 1 1 1 0 Histone methylation protein DOT1 RrnaAD PF00398.20 gi|386000928|ref|YP_005919227.1| - 0.23 10.5 0.0 0.31 10.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TP_methylase PF00590.20 gi|386000929|ref|YP_005919228.1| - 2.9e-31 109.1 0.6 9.7e-31 107.4 0.6 1.6 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|386000930|ref|YP_005919229.1| - 3.3e-48 164.5 1.7 3.8e-48 164.3 1.7 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases VipB PF05943.12 gi|386000930|ref|YP_005919229.1| - 0.043 12.6 0.0 0.061 12.1 0.0 1.1 1 0 0 1 1 1 0 Type VI secretion protein, EvpB/VC_A0108, tail sheath CbiG_C PF01890.16 gi|386000931|ref|YP_005919230.1| - 2.1e-25 89.5 0.1 3.2e-25 88.9 0.1 1.3 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus CbiG_N PF11760.8 gi|386000931|ref|YP_005919230.1| - 2.5e-25 88.3 0.2 2.5e-25 88.3 0.2 2.2 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal TP_methylase PF00590.20 gi|386000932|ref|YP_005919231.1| - 1.5e-64 217.9 5.3 7.5e-34 117.5 0.6 2.1 2 0 0 2 2 2 2 Tetrapyrrole (Corrin/Porphyrin) Methylases Adeno_PIX PF03955.14 gi|386000932|ref|YP_005919231.1| - 0.35 11.0 2.9 11 6.3 0.4 2.8 2 1 1 3 3 3 0 Adenovirus hexon-associated protein (IX) CbiC PF02570.15 gi|386000933|ref|YP_005919232.1| - 6.1e-58 195.7 2.1 6.9e-58 195.5 2.1 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiD PF01888.17 gi|386000934|ref|YP_005919233.1| - 3.4e-43 147.8 2.8 4.5e-43 147.4 2.8 1.1 1 0 0 1 1 1 1 CbiD TP_methylase PF00590.20 gi|386000935|ref|YP_005919234.1| - 1.1e-21 77.8 1.1 4.4e-21 75.8 1.1 1.9 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Ada_Zn_binding PF02805.16 gi|386000936|ref|YP_005919235.1| - 2.5e-08 33.8 0.1 4.3e-08 33.1 0.1 1.3 1 0 0 1 1 1 1 Metal binding domain of Ada Auto_anti-p27 PF06677.12 gi|386000937|ref|YP_005919236.1| - 2.8e-11 43.4 0.9 4.2e-11 42.8 0.9 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0147 PF03685.13 gi|386000938|ref|YP_005919237.1| - 2.8e-30 104.2 2.2 3e-30 104.1 2.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) Cdc6_C PF09079.11 gi|386000939|ref|YP_005919238.1| - 5.9e-22 77.4 0.1 2.1e-21 75.7 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|386000939|ref|YP_005919238.1| - 3.2e-13 50.1 0.0 7.7e-13 48.9 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|386000939|ref|YP_005919238.1| - 9.2e-12 45.7 0.8 2.2e-08 34.7 0.0 2.8 2 1 1 3 3 3 2 AAA ATPase domain AAA PF00004.29 gi|386000939|ref|YP_005919238.1| - 6.1e-09 36.4 0.0 1.5e-08 35.1 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|386000939|ref|YP_005919238.1| - 3.5e-05 23.6 0.0 7.9e-05 22.4 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain TniB PF05621.11 gi|386000939|ref|YP_005919238.1| - 4e-05 23.1 0.0 7.3e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|386000939|ref|YP_005919238.1| - 0.00014 21.8 0.0 0.00027 20.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain RuvB_N PF05496.12 gi|386000939|ref|YP_005919238.1| - 0.00015 21.5 0.0 0.02 14.6 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain ATPase_2 PF01637.18 gi|386000939|ref|YP_005919238.1| - 0.00031 20.8 0.2 0.0015 18.5 0.2 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|386000939|ref|YP_005919238.1| - 0.00055 19.2 0.0 0.00087 18.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|386000939|ref|YP_005919238.1| - 0.0036 17.1 0.0 0.0062 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|386000939|ref|YP_005919238.1| - 0.0069 15.7 0.0 0.0093 15.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|386000939|ref|YP_005919238.1| - 0.015 14.9 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_assoc_2 PF16193.5 gi|386000939|ref|YP_005919238.1| - 0.019 15.3 0.3 0.055 13.8 0.3 1.8 1 0 0 1 1 1 0 AAA C-terminal domain AAA_18 PF13238.6 gi|386000939|ref|YP_005919238.1| - 0.021 15.3 0.2 0.06 13.9 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|386000939|ref|YP_005919238.1| - 0.038 14.0 0.0 0.08 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|386000939|ref|YP_005919238.1| - 0.046 14.1 0.0 0.14 12.6 0.0 1.8 2 0 0 2 2 1 0 RNA helicase DEAD PF00270.29 gi|386000939|ref|YP_005919238.1| - 0.053 13.3 3.9 1.3 8.7 0.1 2.9 3 0 0 3 3 3 0 DEAD/DEAH box helicase AAA_5 PF07728.14 gi|386000939|ref|YP_005919238.1| - 0.055 13.5 0.3 0.41 10.6 0.3 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.18 gi|386000939|ref|YP_005919238.1| - 0.066 12.6 0.9 0.76 9.1 0.1 2.3 1 1 1 2 2 2 0 FtsK/SpoIIIE family TsaE PF02367.17 gi|386000939|ref|YP_005919238.1| - 0.069 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_10 PF12846.7 gi|386000939|ref|YP_005919238.1| - 0.14 11.1 0.2 0.39 9.6 0.1 1.7 2 0 0 2 2 2 0 AAA-like domain KAP_NTPase PF07693.14 gi|386000939|ref|YP_005919238.1| - 0.16 11.2 0.2 9.9 5.3 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain IstB_IS21 PF01695.17 gi|386000939|ref|YP_005919238.1| - 0.17 11.6 2.1 0.27 10.9 0.1 2.3 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_13 PF13166.6 gi|386000939|ref|YP_005919238.1| - 0.23 10.1 0.0 0.37 9.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain Pyr_redox_2 PF07992.14 gi|386000940|ref|YP_005919239.1| - 1.5e-35 122.9 5.1 1.7e-35 122.7 5.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|386000940|ref|YP_005919239.1| - 2.4e-21 76.3 2.2 2.9e-16 59.6 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|386000940|ref|YP_005919239.1| - 9.2e-08 31.6 12.0 2.4e-05 23.6 1.7 3.6 2 2 2 4 4 4 3 FAD binding domain HI0933_like PF03486.14 gi|386000940|ref|YP_005919239.1| - 1.6e-06 27.1 3.7 0.00043 19.1 0.4 2.6 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.22 gi|386000940|ref|YP_005919239.1| - 2.6e-05 23.5 9.4 0.0068 15.5 0.4 3.6 4 0 0 4 4 4 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|386000940|ref|YP_005919239.1| - 8.5e-05 21.9 0.3 0.00017 20.9 0.3 1.5 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|386000940|ref|YP_005919239.1| - 0.00055 19.4 0.2 0.00055 19.4 0.2 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|386000940|ref|YP_005919239.1| - 0.0016 18.1 11.4 0.06 12.9 0.1 2.5 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|386000940|ref|YP_005919239.1| - 0.0017 17.7 0.8 0.0032 16.8 0.8 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|386000940|ref|YP_005919239.1| - 0.0091 16.2 0.4 0.0091 16.2 0.4 2.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HU-DNA_bdg PF14848.6 gi|386000940|ref|YP_005919239.1| - 0.046 13.7 0.0 0.081 12.9 0.0 1.3 1 0 0 1 1 1 0 DNA-binding domain K_oxygenase PF13434.6 gi|386000940|ref|YP_005919239.1| - 0.066 12.3 3.9 0.34 10.0 0.0 2.4 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox PF00070.27 gi|386000940|ref|YP_005919239.1| - 0.79 10.3 6.0 6.3 7.4 0.1 3.1 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Radical_SAM PF04055.21 gi|386000941|ref|YP_005919240.1| - 9.2e-05 22.9 0.0 0.00017 22.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF1677 PF07911.13 gi|386000941|ref|YP_005919240.1| - 0.85 10.0 3.2 1.3 9.4 0.3 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1677) Usp PF00582.26 gi|386000942|ref|YP_005919241.1| - 1.2e-38 132.8 0.3 6.9e-19 68.8 0.3 2.1 2 0 0 2 2 2 2 Universal stress protein family DUF1646 PF07854.12 gi|386000943|ref|YP_005919242.1| - 5.9e-117 390.9 27.7 7.3e-117 390.6 27.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Usp PF00582.26 gi|386000944|ref|YP_005919243.1| - 6.3e-41 140.2 2.4 3.4e-21 76.2 0.1 2.2 2 0 0 2 2 2 2 Universal stress protein family UPF0180 PF03698.13 gi|386000944|ref|YP_005919243.1| - 0.054 13.7 0.5 15 5.8 0.0 3.1 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0180) RQC PF09382.10 gi|386000944|ref|YP_005919243.1| - 0.077 12.8 0.0 3.7 7.4 0.0 2.9 3 0 0 3 3 3 0 RQC domain DUF3347 PF11827.8 gi|386000944|ref|YP_005919243.1| - 0.2 11.8 0.3 8 6.6 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3347) DUF1646 PF07854.12 gi|386000945|ref|YP_005919244.1| - 8.5e-116 387.1 29.1 9.5e-116 387.0 29.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Usp PF00582.26 gi|386000946|ref|YP_005919245.1| - 6.3e-41 140.2 2.4 3.4e-21 76.2 0.1 2.2 2 0 0 2 2 2 2 Universal stress protein family UPF0180 PF03698.13 gi|386000946|ref|YP_005919245.1| - 0.054 13.7 0.5 15 5.8 0.0 3.1 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0180) RQC PF09382.10 gi|386000946|ref|YP_005919245.1| - 0.077 12.8 0.0 3.7 7.4 0.0 2.9 3 0 0 3 3 3 0 RQC domain DUF3347 PF11827.8 gi|386000946|ref|YP_005919245.1| - 0.2 11.8 0.3 8 6.6 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3347) DUF1646 PF07854.12 gi|386000947|ref|YP_005919246.1| - 8.5e-116 387.1 29.1 9.5e-116 387.0 29.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Usp PF00582.26 gi|386000948|ref|YP_005919247.1| - 6.3e-41 140.2 2.4 3.4e-21 76.2 0.1 2.2 2 0 0 2 2 2 2 Universal stress protein family UPF0180 PF03698.13 gi|386000948|ref|YP_005919247.1| - 0.054 13.7 0.5 15 5.8 0.0 3.1 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0180) RQC PF09382.10 gi|386000948|ref|YP_005919247.1| - 0.077 12.8 0.0 3.7 7.4 0.0 2.9 3 0 0 3 3 3 0 RQC domain DUF3347 PF11827.8 gi|386000948|ref|YP_005919247.1| - 0.2 11.8 0.3 8 6.6 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3347) Colicin_E5 PF12106.8 gi|386000949|ref|YP_005919248.1| - 2.5e-06 27.7 0.2 13 6.2 0.0 5.8 6 0 0 6 6 6 2 Colicin E5 ribonuclease domain mRNA_decap_C PF16741.5 gi|386000949|ref|YP_005919248.1| - 0.01 15.1 0.0 1.6e+02 1.7 0.0 4.9 6 0 0 6 6 6 0 mRNA-decapping enzyme C-terminus V-ATPase_G_2 PF16999.5 gi|386000950|ref|YP_005919249.1| - 0.0014 19.0 19.0 0.0024 18.3 19.0 1.3 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|386000950|ref|YP_005919249.1| - 0.0019 18.3 19.3 0.053 13.6 8.4 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) V-ATPase_G PF03179.15 gi|386000950|ref|YP_005919249.1| - 0.032 14.7 13.3 0.038 14.5 13.3 1.1 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DUF3552 PF12072.8 gi|386000950|ref|YP_005919249.1| - 0.035 13.5 16.6 0.17 11.3 2.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF643 PF04867.12 gi|386000950|ref|YP_005919249.1| - 0.06 14.0 0.2 0.074 13.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF643) YtxH PF12732.7 gi|386000950|ref|YP_005919249.1| - 0.86 10.2 9.9 2.8 8.5 0.9 2.1 1 1 1 2 2 2 0 YtxH-like protein DUF883 PF05957.13 gi|386000950|ref|YP_005919249.1| - 0.97 10.1 8.5 8.3 7.1 8.4 2.0 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) CinA_KH PF18146.1 gi|386000950|ref|YP_005919249.1| - 2 8.6 7.1 0.69 10.1 1.9 2.2 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain DivIVA PF05103.13 gi|386000950|ref|YP_005919249.1| - 3 7.9 14.1 73 3.4 14.1 2.1 1 1 0 1 1 1 0 DivIVA protein V_ATPase_I PF01496.19 gi|386000951|ref|YP_005919250.1| - 3.4e-30 104.7 0.0 1.3e-16 59.7 0.0 2.7 2 1 0 2 2 2 2 V-type ATPase 116kDa subunit family DUF948 PF06103.11 gi|386000951|ref|YP_005919250.1| - 1.2 9.4 2.9 1.1 9.6 0.0 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) vATP-synt_E PF01991.18 gi|386000952|ref|YP_005919251.1| - 2.4e-31 108.7 12.1 2.7e-31 108.5 12.1 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Unpaired PF15972.5 gi|386000952|ref|YP_005919251.1| - 0.12 11.9 0.8 0.17 11.4 0.8 1.2 1 0 0 1 1 1 0 Unpaired protein Ribosomal_L22 PF00237.19 gi|386000952|ref|YP_005919251.1| - 0.39 11.0 2.5 0.72 10.1 2.5 1.4 1 0 0 1 1 1 0 Ribosomal protein L22p/L17e ATP-synt_B PF00430.18 gi|386000952|ref|YP_005919251.1| - 2.4 8.2 15.0 0.91 9.6 9.7 2.5 2 2 0 2 2 2 0 ATP synthase B/B' CF(0) vATP-synt_AC39 PF01992.16 gi|386000953|ref|YP_005919252.1| - 4e-78 263.3 0.1 4.5e-78 263.1 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit HTH_40 PF14493.6 gi|386000953|ref|YP_005919252.1| - 0.026 15.0 0.0 21 5.6 0.0 3.4 3 2 0 3 3 3 0 Helix-turn-helix domain ATP-synt_F PF01990.17 gi|386000954|ref|YP_005919253.1| - 3.6e-19 68.9 1.5 4.1e-19 68.7 1.5 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|386000955|ref|YP_005919254.1| - 4.8e-88 294.3 0.0 2.5e-86 288.8 0.0 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|386000955|ref|YP_005919254.1| - 2.7e-41 140.2 0.0 6.1e-41 139.1 0.0 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|386000955|ref|YP_005919254.1| - 1e-14 54.8 1.3 3.1e-14 53.3 1.3 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain TrfA PF07042.11 gi|386000955|ref|YP_005919254.1| - 0.025 13.6 0.0 0.044 12.8 0.0 1.3 1 0 0 1 1 1 0 TrfA protein PhoQ_Sensor PF08918.10 gi|386000955|ref|YP_005919254.1| - 0.089 12.6 0.3 0.32 10.8 0.0 1.9 2 1 1 3 3 3 0 PhoQ Sensor AAA_22 PF13401.6 gi|386000955|ref|YP_005919254.1| - 0.17 12.2 0.0 0.36 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|386000956|ref|YP_005919255.1| - 4.9e-64 215.9 0.0 6.5e-64 215.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|386000956|ref|YP_005919255.1| - 1.3e-10 41.6 5.9 1.3e-10 41.6 5.9 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|386000956|ref|YP_005919255.1| - 0.26 11.4 1.9 0.62 10.2 1.9 1.6 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_D PF01813.17 gi|386000957|ref|YP_005919256.1| - 7.4e-57 192.4 8.7 8.3e-57 192.2 8.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit D ApoLp-III PF07464.11 gi|386000957|ref|YP_005919256.1| - 0.0057 16.8 3.5 0.88 9.7 0.9 2.4 2 1 0 2 2 2 2 Apolipophorin-III precursor (apoLp-III) Peptidase_A17 PF05380.13 gi|386000957|ref|YP_005919256.1| - 0.012 15.6 0.4 0.023 14.7 0.4 1.5 1 1 0 1 1 1 0 Pao retrotransposon peptidase Filament PF00038.21 gi|386000957|ref|YP_005919256.1| - 0.014 15.0 3.0 0.022 14.4 0.3 2.0 2 0 0 2 2 2 0 Intermediate filament protein DUF2703 PF10865.8 gi|386000957|ref|YP_005919256.1| - 0.066 13.4 0.9 2.1 8.6 0.1 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF2703) DUF948 PF06103.11 gi|386000957|ref|YP_005919256.1| - 0.16 12.3 2.5 1.2 9.5 0.2 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF22 PF01629.16 gi|386000958|ref|YP_005919257.1| - 1.2e-16 60.3 0.0 1.5e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF22 DUF61 PF01886.16 gi|386000959|ref|YP_005919258.1| - 1.5e-44 151.1 0.4 1.7e-44 150.9 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Acetyltransf_9 PF13527.7 gi|386000960|ref|YP_005919259.1| - 2.6e-12 46.9 0.0 1.6e-11 44.3 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|386000960|ref|YP_005919259.1| - 1e-11 45.1 0.0 2.1e-11 44.1 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|386000960|ref|YP_005919259.1| - 4.7e-09 36.5 0.0 7.9e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|386000960|ref|YP_005919259.1| - 3.5e-05 23.7 0.0 0.00011 22.1 0.0 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain PLD_C PF12357.8 gi|386000960|ref|YP_005919259.1| - 0.053 13.4 0.0 0.54 10.2 0.0 2.1 1 1 1 2 2 2 0 Phospholipase D C terminal TPP_enzyme_C PF02775.21 gi|386000962|ref|YP_005919261.1| - 0.11 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BPL_N PF09825.9 gi|386000963|ref|YP_005919262.1| - 0.089 11.9 0.0 1.4 8.0 0.0 2.0 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal NikR_C PF08753.11 gi|386000964|ref|YP_005919263.1| - 4.5e-34 116.4 5.7 6.4e-34 116.0 5.7 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|386000964|ref|YP_005919263.1| - 3.7e-08 33.0 0.0 6.8e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|386000964|ref|YP_005919263.1| - 0.012 15.8 0.0 0.025 14.7 0.0 1.6 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_8 PF17723.1 gi|386000964|ref|YP_005919263.1| - 0.03 14.5 0.1 0.06 13.5 0.0 1.6 1 1 1 2 2 2 0 Ribbon-Helix-Helix transcriptional regulator family Fibrillarin PF01269.17 gi|386000965|ref|YP_005919264.1| - 1.6e-65 220.5 0.0 4.5e-65 218.9 0.0 1.6 1 1 0 1 1 1 1 Fibrillarin Methyltransf_25 PF13649.6 gi|386000965|ref|YP_005919264.1| - 0.0084 16.8 0.0 0.014 16.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386000965|ref|YP_005919264.1| - 0.018 14.8 0.0 0.022 14.5 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|386000965|ref|YP_005919264.1| - 0.066 13.3 0.0 0.092 12.8 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_12 PF08242.12 gi|386000965|ref|YP_005919264.1| - 0.18 12.6 0.0 0.64 10.8 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Peptidase_S24 PF00717.23 gi|386000966|ref|YP_005919265.1| - 0.0031 17.5 0.0 0.007 16.3 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like Metallophos PF00149.28 gi|386000967|ref|YP_005919266.1| - 4.2e-11 43.7 0.0 6.6e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DNA_pol_E_B PF04042.16 gi|386000967|ref|YP_005919266.1| - 5.4e-10 39.0 0.0 9.1e-10 38.2 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|386000967|ref|YP_005919266.1| - 1.4e-05 25.4 0.0 3.8e-05 23.9 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|386000967|ref|YP_005919266.1| - 0.00023 21.1 1.3 0.00028 20.8 0.4 1.6 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DUF4539 PF15072.6 gi|386000967|ref|YP_005919266.1| - 0.0086 16.1 0.1 0.098 12.7 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4539) DUF1538 PF07556.11 gi|386000968|ref|YP_005919267.1| - 3e-68 229.3 28.2 3.4e-68 229.1 28.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) DUF2206 PF09971.9 gi|386000968|ref|YP_005919267.1| - 3.1 6.5 9.0 0.088 11.6 3.0 1.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2206) DUF1538 PF07556.11 gi|386000969|ref|YP_005919268.1| - 3.8e-67 225.7 21.9 4.5e-67 225.4 21.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) P-II PF00543.22 gi|386000970|ref|YP_005919269.1| - 0.027 15.1 0.2 0.037 14.6 0.2 1.2 1 0 0 1 1 1 0 Nitrogen regulatory protein P-II ApbA_C PF08546.11 gi|386000971|ref|YP_005919270.1| - 1.6e-32 112.3 0.0 2.1e-32 111.9 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|386000971|ref|YP_005919270.1| - 5.5e-18 65.0 0.0 9.9e-18 64.2 0.0 1.4 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|386000971|ref|YP_005919270.1| - 0.015 15.8 0.0 0.026 15.0 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Octopine_DH PF02317.17 gi|386000971|ref|YP_005919270.1| - 0.063 13.4 0.0 0.54 10.3 0.0 2.1 1 1 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain DUF2953 PF11167.8 gi|386000972|ref|YP_005919271.1| - 0.0018 18.3 0.0 0.0027 17.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) KASH PF10541.9 gi|386000972|ref|YP_005919271.1| - 1.1 9.5 7.5 2.4 8.5 6.4 2.0 2 0 0 2 2 2 0 Nuclear envelope localisation domain Spore_YtfJ PF09579.10 gi|386000973|ref|YP_005919272.1| - 1e-19 70.5 3.8 1e-19 70.5 3.8 1.8 2 0 0 2 2 2 1 Sporulation protein YtfJ (Spore_YtfJ) Methyltransf_25 PF13649.6 gi|386000974|ref|YP_005919273.1| - 0.00041 21.0 0.0 0.001 19.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386000974|ref|YP_005919273.1| - 0.0013 19.3 0.0 0.0025 18.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|386000974|ref|YP_005919273.1| - 0.0041 16.7 0.0 0.0064 16.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|386000974|ref|YP_005919273.1| - 0.13 10.8 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase FeoA PF04023.14 gi|386000975|ref|YP_005919274.1| - 9.4e-17 61.0 0.2 1.1e-16 60.9 0.2 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|386000976|ref|YP_005919275.1| - 3.7e-66 221.5 0.1 4.8e-66 221.1 0.1 1.1 1 0 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1 PF01926.23 gi|386000976|ref|YP_005919275.1| - 2.1e-19 69.7 0.0 3.4e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|386000976|ref|YP_005919275.1| - 1.7e-12 47.7 0.3 3.5e-12 46.7 0.3 1.6 1 0 0 1 1 1 1 FeoB cytosolic helical domain SRPRB PF09439.10 gi|386000976|ref|YP_005919275.1| - 1.3e-06 28.0 0.0 1.8e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|386000976|ref|YP_005919275.1| - 0.00056 19.9 0.1 0.86 9.5 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|386000976|ref|YP_005919275.1| - 0.0023 17.5 0.0 0.31 10.6 0.0 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|386000976|ref|YP_005919275.1| - 0.0024 17.2 0.0 0.0035 16.7 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Roc PF08477.13 gi|386000976|ref|YP_005919275.1| - 0.0095 16.2 0.1 0.021 15.0 0.1 1.8 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|386000976|ref|YP_005919275.1| - 0.018 14.6 0.0 0.031 13.9 0.0 1.4 1 1 0 1 1 1 0 Ras family TniB PF05621.11 gi|386000976|ref|YP_005919275.1| - 0.042 13.3 0.1 2.4 7.5 0.0 2.9 2 1 1 3 3 3 0 Bacterial TniB protein Gate PF07670.14 gi|386000977|ref|YP_005919276.1| - 4.9e-42 142.7 22.3 4.6e-28 97.7 4.5 3.0 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.12 gi|386000977|ref|YP_005919276.1| - 1.4e-19 69.5 1.9 1.4e-19 69.5 1.9 3.7 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus PMP1_2 PF08114.11 gi|386000977|ref|YP_005919276.1| - 0.84 9.4 4.2 12 5.8 0.2 3.1 2 0 0 2 2 2 0 ATPase proteolipid family DUF805 PF05656.14 gi|386000978|ref|YP_005919277.1| - 0.07 13.6 0.7 0.16 12.4 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF805) DUF4538 PF15061.6 gi|386000978|ref|YP_005919277.1| - 1.5 8.7 4.8 1.8 8.4 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) Fe_dep_repress PF01325.19 gi|386000979|ref|YP_005919278.1| - 7.6e-22 77.3 0.1 1.6e-21 76.3 0.2 1.5 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|386000979|ref|YP_005919278.1| - 4.7e-14 52.2 0.0 1.7e-13 50.5 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|386000979|ref|YP_005919278.1| - 1.4e-05 24.9 0.0 2.5e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|386000979|ref|YP_005919278.1| - 0.0011 18.8 0.0 0.0021 17.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|386000979|ref|YP_005919278.1| - 0.0024 18.4 0.0 0.0055 17.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|386000979|ref|YP_005919278.1| - 0.0026 17.5 0.0 0.0058 16.4 0.0 1.6 1 0 0 1 1 1 1 LexA DNA binding domain MarR PF01047.22 gi|386000979|ref|YP_005919278.1| - 0.006 16.5 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|386000979|ref|YP_005919278.1| - 0.011 16.0 0.0 0.018 15.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Ldl_recept_a PF00057.18 gi|386000979|ref|YP_005919278.1| - 0.05 13.8 0.5 0.086 13.1 0.5 1.4 1 0 0 1 1 1 0 Low-density lipoprotein receptor domain class A HTH_IclR PF09339.10 gi|386000979|ref|YP_005919278.1| - 0.059 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|386000979|ref|YP_005919278.1| - 0.069 12.7 0.0 0.16 11.6 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding OMPdecase PF00215.24 gi|386000980|ref|YP_005919279.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Peripla_BP_6 PF13458.6 gi|386000981|ref|YP_005919280.1| - 2.4e-47 162.3 0.2 2.8e-47 162.1 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|386000981|ref|YP_005919280.1| - 2.7e-20 72.8 0.0 2.6e-19 69.6 0.0 1.9 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|386000981|ref|YP_005919280.1| - 7.4e-15 54.8 0.0 3.6e-08 32.8 0.0 2.2 2 1 0 2 2 2 2 Periplasmic binding protein domain DUF488 PF04343.13 gi|386000982|ref|YP_005919281.1| - 2.2e-31 109.0 0.2 2.6e-31 108.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 AAA_25 PF13481.6 gi|386000982|ref|YP_005919281.1| - 0.076 12.6 0.4 0.098 12.2 0.4 1.2 1 0 0 1 1 1 0 AAA domain HEAT_2 PF13646.6 gi|386000984|ref|YP_005919283.1| - 4.9e-50 167.9 10.6 1.4e-18 67.0 0.1 3.9 1 1 3 4 4 4 4 HEAT repeats HEAT_PBS PF03130.16 gi|386000984|ref|YP_005919283.1| - 4.8e-46 150.8 21.5 1.7e-07 31.2 0.0 7.2 7 0 0 7 7 7 7 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|386000984|ref|YP_005919283.1| - 8e-34 112.8 0.3 8.7e-05 22.5 0.0 7.1 7 0 0 7 7 7 6 HEAT repeat HEAT_EZ PF13513.6 gi|386000984|ref|YP_005919283.1| - 1.7e-18 66.7 8.6 0.013 16.0 0.0 7.0 7 0 0 7 7 7 6 HEAT-like repeat Arm PF00514.23 gi|386000984|ref|YP_005919283.1| - 5.5e-13 48.5 0.1 0.038 14.0 0.0 6.0 1 1 6 7 7 7 3 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|386000984|ref|YP_005919283.1| - 5e-11 42.9 0.0 0.0017 18.4 0.0 5.2 1 1 3 4 4 4 3 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|386000984|ref|YP_005919283.1| - 0.00024 19.8 0.0 0.056 12.0 0.0 2.8 1 1 2 3 3 3 2 Adaptin N terminal region Aconitase_B_N PF11791.8 gi|386000984|ref|YP_005919283.1| - 0.031 14.4 0.0 22 5.1 0.0 3.8 2 1 1 4 4 4 0 Aconitate B N-terminal domain DSX_dimer PF08828.10 gi|386000984|ref|YP_005919283.1| - 0.052 13.2 0.0 23 4.7 0.0 3.3 2 1 1 3 3 3 0 Doublesex dimerisation domain Vac14_Fab1_bd PF12755.7 gi|386000984|ref|YP_005919283.1| - 0.25 11.9 0.0 55 4.5 0.0 3.7 3 2 2 5 5 5 0 Vacuolar 14 Fab1-binding region CPSase_L_D2 PF02786.17 gi|386000985|ref|YP_005919284.1| - 1.4e-101 338.4 0.6 2.7e-67 226.3 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|386000985|ref|YP_005919284.1| - 5.8e-41 139.7 0.0 1.4e-40 138.4 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MGS PF02142.22 gi|386000985|ref|YP_005919284.1| - 4.2e-19 68.5 1.0 6.9e-18 64.6 0.1 3.4 4 0 0 4 4 3 1 MGS-like domain ATP-grasp PF02222.22 gi|386000985|ref|YP_005919284.1| - 9.3e-17 61.1 0.1 3.4e-09 36.5 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|386000985|ref|YP_005919284.1| - 1.6e-15 57.2 0.0 1.3e-06 28.1 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|386000985|ref|YP_005919284.1| - 1.5e-14 53.9 0.0 4.7e-06 26.4 0.0 2.7 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|386000985|ref|YP_005919284.1| - 2.9e-13 50.2 0.2 5.1e-06 26.6 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|386000985|ref|YP_005919284.1| - 2.4e-08 34.0 0.1 0.003 17.3 0.0 2.7 2 1 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|386000985|ref|YP_005919284.1| - 0.0007 19.1 0.0 0.029 13.8 0.0 2.7 2 0 0 2 2 2 1 ATP-grasp domain HTH_23 PF13384.6 gi|386000985|ref|YP_005919284.1| - 0.01 15.6 0.0 0.28 11.0 0.0 2.9 2 0 0 2 2 2 0 Homeodomain-like domain ATP-grasp_2 PF08442.10 gi|386000985|ref|YP_005919284.1| - 0.014 15.0 0.0 3 7.4 0.0 2.8 2 1 0 2 2 2 0 ATP-grasp domain HTH_25 PF13413.6 gi|386000985|ref|YP_005919284.1| - 0.021 14.7 0.0 0.16 11.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3071 PF11268.8 gi|386000985|ref|YP_005919284.1| - 0.025 14.6 0.1 0.075 13.1 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) ComX PF05952.12 gi|386000985|ref|YP_005919284.1| - 0.041 13.8 0.0 0.13 12.2 0.0 1.8 1 0 0 1 1 1 0 Bacillus competence pheromone ComX Peptidase_S66 PF02016.15 gi|386000985|ref|YP_005919284.1| - 0.17 12.0 0.0 1.8 8.7 0.0 2.8 3 0 0 3 3 3 0 LD-carboxypeptidase N-terminal domain TIR_2 PF13676.6 gi|386000985|ref|YP_005919284.1| - 0.18 12.4 0.0 1.4 9.5 0.0 2.6 3 0 0 3 3 2 0 TIR domain CPSase_sm_chain PF00988.22 gi|386000986|ref|YP_005919285.1| - 2.5e-45 153.5 0.0 3.7e-45 152.9 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|386000986|ref|YP_005919285.1| - 1.1e-37 129.7 0.0 1.6e-37 129.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|386000986|ref|YP_005919285.1| - 1.7e-08 34.5 0.3 6.1e-06 26.1 0.3 2.3 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|386000986|ref|YP_005919285.1| - 0.18 11.6 0.0 0.38 10.5 0.0 1.5 1 0 0 1 1 1 0 DJ-1/PfpI family Sacchrp_dh_C PF16653.5 gi|386000987|ref|YP_005919286.1| - 3e-39 135.7 0.0 3.8e-39 135.4 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|386000987|ref|YP_005919286.1| - 2.6e-07 31.0 0.0 4.7e-07 30.1 0.0 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|386000987|ref|YP_005919286.1| - 0.0052 17.6 0.0 0.0083 16.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Epimerase PF01370.21 gi|386000987|ref|YP_005919286.1| - 0.0089 15.5 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|386000987|ref|YP_005919286.1| - 0.022 14.7 0.6 0.035 14.0 0.6 1.3 1 0 0 1 1 1 0 NAD(P)H-binding KR PF08659.10 gi|386000987|ref|YP_005919286.1| - 0.026 14.4 0.4 0.047 13.6 0.4 1.3 1 0 0 1 1 1 0 KR domain adh_short PF00106.25 gi|386000987|ref|YP_005919286.1| - 0.052 13.0 0.1 0.091 12.2 0.1 1.4 1 0 0 1 1 1 0 short chain dehydrogenase DapB_N PF01113.20 gi|386000987|ref|YP_005919286.1| - 0.2 11.7 0.5 0.35 11.0 0.5 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GDP_Man_Dehyd PF16363.5 gi|386000987|ref|YP_005919286.1| - 0.27 10.6 0.0 0.37 10.2 0.0 1.1 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase DUF4129 PF13559.6 gi|386000987|ref|YP_005919286.1| - 4.7 7.6 9.2 0.16 12.2 0.5 3.3 4 1 0 4 4 4 0 Domain of unknown function (DUF4129) HGTP_anticodon PF03129.20 gi|386000989|ref|YP_005919288.1| - 5.8e-24 84.1 0.0 1.5e-23 82.7 0.0 1.8 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|386000989|ref|YP_005919288.1| - 2.3e-10 40.7 0.1 7.9e-09 35.7 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) zinc_ribbon_2 PF13240.6 gi|386000989|ref|YP_005919288.1| - 0.011 15.5 2.4 0.017 14.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|386000989|ref|YP_005919288.1| - 0.017 15.2 0.0 2.8 8.1 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|386000989|ref|YP_005919288.1| - 0.06 12.8 0.8 0.24 10.9 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|386000989|ref|YP_005919288.1| - 0.1 13.1 2.8 1.4 9.5 0.0 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type ADK_lid PF05191.14 gi|386000989|ref|YP_005919288.1| - 0.47 10.5 1.5 0.84 9.7 0.2 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C2H2_4 PF13894.6 gi|386000989|ref|YP_005919288.1| - 0.77 10.8 3.7 22 6.2 0.0 3.9 4 0 0 4 4 4 0 C2H2-type zinc finger MHC2-interact PF09307.10 gi|386000990|ref|YP_005919289.1| - 0.011 15.7 0.3 0.023 14.7 0.3 1.6 1 0 0 1 1 1 0 CLIP, MHC2 interacting ADK PF00406.22 gi|386000991|ref|YP_005919290.1| - 1.6e-59 200.4 0.0 1.8e-59 200.2 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|386000991|ref|YP_005919290.1| - 2.7e-27 95.9 0.1 5.4e-27 94.9 0.0 1.4 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|386000991|ref|YP_005919290.1| - 1.6e-16 60.0 2.0 2.7e-16 59.2 1.4 1.7 2 0 0 2 2 2 1 Adenylate kinase, active site lid AAA_33 PF13671.6 gi|386000991|ref|YP_005919290.1| - 2.8e-05 24.3 0.0 8.6e-05 22.7 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|386000991|ref|YP_005919290.1| - 2.9e-05 24.6 0.0 6.1e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Hydin_ADK PF17213.3 gi|386000991|ref|YP_005919290.1| - 7.4e-05 23.1 0.1 0.076 13.3 0.0 2.3 1 1 1 2 2 2 2 Hydin Adenylate kinase-like domain Cytidylate_kin PF02224.18 gi|386000991|ref|YP_005919290.1| - 0.0016 18.2 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase AAA PF00004.29 gi|386000991|ref|YP_005919290.1| - 0.0025 18.2 0.0 0.0056 17.1 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|386000991|ref|YP_005919290.1| - 0.011 16.0 0.0 0.27 11.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|386000991|ref|YP_005919290.1| - 0.025 14.3 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Thymidylate_kin PF02223.17 gi|386000991|ref|YP_005919290.1| - 0.035 13.8 0.0 1.3 8.6 0.0 2.2 1 1 1 2 2 2 0 Thymidylate kinase AAA_24 PF13479.6 gi|386000991|ref|YP_005919290.1| - 0.041 13.6 0.2 0.19 11.4 0.0 2.1 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|386000991|ref|YP_005919290.1| - 0.11 13.0 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Pox_A3L PF05288.11 gi|386000991|ref|YP_005919290.1| - 0.19 11.8 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A3L Protein AA_kinase PF00696.28 gi|386000992|ref|YP_005919291.1| - 5.1e-28 98.3 5.2 6.2e-27 94.7 5.2 1.9 1 1 0 1 1 1 1 Amino acid kinase family K-cyclin_vir_C PF09080.10 gi|386000992|ref|YP_005919291.1| - 0.11 12.9 2.2 0.21 12.0 2.1 1.5 1 1 0 1 1 1 0 K cyclin, C terminal HrcA_DNA-bdg PF03444.15 gi|386000993|ref|YP_005919292.1| - 1.5e-26 91.8 0.0 2.6e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|386000993|ref|YP_005919292.1| - 1.8e-10 41.1 1.1 0.00014 22.3 0.1 3.0 3 0 0 3 3 3 2 CBS domain Rrf2 PF02082.20 gi|386000993|ref|YP_005919292.1| - 9.4e-06 25.9 0.0 2.1e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|386000993|ref|YP_005919292.1| - 3.9e-05 23.5 0.0 8.1e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain Radical_SAM PF04055.21 gi|386000994|ref|YP_005919293.1| - 2.4e-21 76.8 0.0 4.6e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|386000994|ref|YP_005919293.1| - 7.2e-09 36.0 0.2 1.4e-08 35.1 0.2 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|386000994|ref|YP_005919293.1| - 0.0025 18.1 0.0 0.0041 17.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|386000994|ref|YP_005919293.1| - 0.11 12.7 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Chorion_S16 PF05836.12 gi|386000994|ref|YP_005919293.1| - 0.15 12.3 0.0 0.48 10.7 0.0 1.9 1 0 0 1 1 1 0 Chorion protein S16 PRA-CH PF01502.18 gi|386000995|ref|YP_005919294.1| - 1.7e-36 123.8 0.1 2.1e-36 123.6 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Nre_N PF04894.12 gi|386000996|ref|YP_005919295.1| - 3.6e-81 272.9 0.0 3.2e-71 240.3 0.0 2.1 2 0 0 2 2 2 2 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|386000996|ref|YP_005919295.1| - 2.1e-37 127.4 0.1 3.2e-37 126.8 0.1 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal HSP20 PF00011.21 gi|386000998|ref|YP_005919297.1| - 1.9e-11 44.0 0.6 8.3e-10 38.7 0.6 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|386000998|ref|YP_005919297.1| - 7.8e-07 28.6 0.0 1.2e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|386000998|ref|YP_005919297.1| - 0.016 16.2 0.1 0.023 15.7 0.1 1.2 1 0 0 1 1 1 0 CS domain PIH1_CS PF18201.1 gi|386000998|ref|YP_005919297.1| - 0.018 15.4 0.0 0.028 14.8 0.0 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain HMA PF00403.26 gi|386000998|ref|YP_005919297.1| - 0.12 12.9 0.2 0.35 11.3 0.2 1.9 1 1 0 1 1 1 0 Heavy-metal-associated domain MarR PF01047.22 gi|386000999|ref|YP_005919298.1| - 0.013 15.4 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|386000999|ref|YP_005919298.1| - 0.033 14.2 0.0 0.04 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Nitroreductase PF00881.24 gi|386001000|ref|YP_005919299.1| - 7.2e-37 127.1 2.6 1.8e-19 70.5 0.3 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|386001000|ref|YP_005919299.1| - 6.8e-23 81.4 0.0 2.7e-11 43.5 0.0 3.1 1 1 2 3 3 3 3 Putative TM nitroreductase SelR PF01641.18 gi|386001001|ref|YP_005919300.1| - 1e-54 183.8 0.0 1.2e-54 183.6 0.0 1.0 1 0 0 1 1 1 1 SelR domain zinc_ribbon_10 PF10058.9 gi|386001001|ref|YP_005919300.1| - 0.0024 17.6 1.0 0.051 13.3 0.0 2.2 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein Yippee-Mis18 PF03226.14 gi|386001001|ref|YP_005919300.1| - 0.0035 17.5 0.0 0.0061 16.8 0.0 1.4 1 0 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Zn_ribbon_SprT PF17283.2 gi|386001001|ref|YP_005919300.1| - 0.14 12.1 1.2 1.3 9.0 1.2 2.3 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DUF2099 PF09872.9 gi|386001002|ref|YP_005919301.1| - 6e-86 287.8 0.1 6.9e-86 287.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) GHMP_kinases_N PF00288.26 gi|386001003|ref|YP_005919302.1| - 4.4e-06 26.8 0.1 8.9e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain AAA_15 PF13175.6 gi|386001004|ref|YP_005919303.1| - 2.3e-35 123.0 0.4 1.5e-34 120.4 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain DUF2813 PF11398.8 gi|386001004|ref|YP_005919303.1| - 5.1e-20 72.1 0.2 1.2e-10 41.3 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_21 PF13304.6 gi|386001004|ref|YP_005919303.1| - 2.9e-17 63.5 2.6 3.5e-15 56.6 2.6 2.4 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|386001004|ref|YP_005919303.1| - 4.7e-09 37.0 0.9 6.8e-09 36.5 0.1 1.8 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|386001004|ref|YP_005919303.1| - 1.2e-06 28.2 0.0 5.8e-06 25.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|386001004|ref|YP_005919303.1| - 0.0006 19.5 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|386001004|ref|YP_005919303.1| - 0.061 13.4 0.0 0.15 12.1 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|386001004|ref|YP_005919303.1| - 0.1 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|386001004|ref|YP_005919303.1| - 0.15 12.5 0.0 0.4 11.2 0.0 1.7 1 0 0 1 1 1 0 ABC transporter UvrD-helicase PF00580.21 gi|386001005|ref|YP_005919304.1| - 4e-57 194.1 0.1 1.3e-56 192.5 0.1 1.8 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|386001005|ref|YP_005919304.1| - 1.2e-32 113.7 0.0 5e-31 108.4 0.0 2.5 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|386001005|ref|YP_005919304.1| - 1.9e-30 106.1 0.0 4.5e-30 104.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|386001005|ref|YP_005919304.1| - 2.4e-08 34.5 1.1 0.00023 21.6 0.0 3.3 2 1 0 2 2 2 2 AAA ATPase domain UvrD_C_2 PF13538.6 gi|386001005|ref|YP_005919304.1| - 4.1e-08 32.9 0.1 1.4e-07 31.2 0.1 1.9 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|386001005|ref|YP_005919304.1| - 4.4e-08 33.1 0.0 1.8e-05 24.5 0.0 2.4 1 1 1 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|386001005|ref|YP_005919304.1| - 2.7e-06 27.3 0.0 0.72 9.5 0.0 3.4 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|386001005|ref|YP_005919304.1| - 9.5e-05 22.3 0.0 0.0015 18.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain SNF2_N PF00176.23 gi|386001005|ref|YP_005919304.1| - 0.0095 14.7 0.0 0.017 13.9 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|386001005|ref|YP_005919304.1| - 0.037 14.3 0.1 0.86 9.9 0.0 2.9 1 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|386001005|ref|YP_005919304.1| - 0.038 13.9 0.0 0.18 11.7 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea ResIII PF04851.15 gi|386001005|ref|YP_005919304.1| - 0.062 13.3 0.0 0.17 11.8 0.0 1.9 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|386001005|ref|YP_005919304.1| - 0.072 12.3 0.1 16 4.6 0.0 3.2 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) Flavi_DEAD PF07652.14 gi|386001005|ref|YP_005919304.1| - 0.086 12.8 0.0 0.75 9.8 0.0 2.1 2 0 0 2 2 2 0 Flavivirus DEAD domain DMRL_synthase PF00885.19 gi|386001006|ref|YP_005919305.1| - 4.8e-15 55.6 0.0 5.4e-15 55.4 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase EF-G-binding_N PF07299.11 gi|386001006|ref|YP_005919305.1| - 0.12 12.9 0.5 0.23 12.0 0.5 1.3 1 0 0 1 1 1 0 Elongation factor G-binding protein, N-terminal Ribonuc_red_lgC PF02867.15 gi|386001007|ref|YP_005919306.1| - 4.9e-149 497.2 0.0 1.3e-146 489.3 0.0 2.1 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|386001007|ref|YP_005919306.1| - 8.9e-20 70.5 0.0 1.9e-19 69.5 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain NRDD PF13597.6 gi|386001007|ref|YP_005919306.1| - 0.12 11.2 0.0 0.76 8.5 0.0 1.9 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase CbiA PF01656.23 gi|386001008|ref|YP_005919307.1| - 1.8e-05 24.8 0.0 2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|386001008|ref|YP_005919307.1| - 9.5e-05 22.3 0.1 0.00013 21.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain DUF1884 PF08967.10 gi|386001009|ref|YP_005919308.1| - 0.02 15.1 0.0 0.021 15.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) VAPB_antitox PF02697.14 gi|386001009|ref|YP_005919308.1| - 0.05 14.4 0.0 0.073 13.9 0.0 1.5 1 1 0 1 1 1 0 Putative antitoxin AIRS_C PF02769.22 gi|386001010|ref|YP_005919309.1| - 2.2e-23 83.1 0.1 3.8e-23 82.4 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|386001010|ref|YP_005919309.1| - 6.7e-16 58.7 1.3 1.1e-15 58.0 1.3 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AA_kinase PF00696.28 gi|386001011|ref|YP_005919310.1| - 3.3e-45 154.6 0.0 3.3e-45 154.6 0.0 2.0 2 1 0 2 2 2 1 Amino acid kinase family ACT PF01842.25 gi|386001011|ref|YP_005919310.1| - 8.8e-23 79.8 3.8 2.1e-10 40.2 0.2 3.0 3 0 0 3 3 3 2 ACT domain ACT_7 PF13840.6 gi|386001011|ref|YP_005919310.1| - 1.6e-22 79.1 2.3 1.9e-11 43.6 0.5 2.5 2 0 0 2 2 2 2 ACT domain LytR_C PF13399.6 gi|386001011|ref|YP_005919310.1| - 0.00043 21.2 0.4 0.0087 17.0 0.4 2.4 2 0 0 2 2 2 1 LytR cell envelope-related transcriptional attenuator ACT_6 PF13740.6 gi|386001011|ref|YP_005919310.1| - 0.11 12.5 0.3 9.7 6.3 0.0 2.8 2 0 0 2 2 2 0 ACT domain GTP_EFTU PF00009.27 gi|386001012|ref|YP_005919311.1| - 8.5e-63 211.4 0.0 1.4e-62 210.7 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|386001012|ref|YP_005919311.1| - 6.5e-27 93.7 0.4 3.6e-26 91.3 0.1 2.5 2 1 1 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|386001012|ref|YP_005919311.1| - 2.4e-25 88.4 0.3 7.4e-25 86.8 0.3 1.9 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|386001012|ref|YP_005919311.1| - 8e-23 80.3 0.0 2.6e-22 78.6 0.0 2.0 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|386001012|ref|YP_005919311.1| - 4.2e-14 52.7 0.4 1.4e-13 51.0 0.4 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|386001012|ref|YP_005919311.1| - 0.0003 20.9 0.0 0.00064 19.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF2888 PF11135.8 gi|386001012|ref|YP_005919311.1| - 0.0029 17.6 0.0 0.0075 16.2 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2888) RF3_C PF16658.5 gi|386001012|ref|YP_005919311.1| - 0.0041 16.9 0.0 0.0098 15.7 0.0 1.7 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain Ras PF00071.22 gi|386001012|ref|YP_005919311.1| - 0.031 13.9 0.0 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 Ras family DUF3748 PF12566.8 gi|386001012|ref|YP_005919311.1| - 0.13 12.3 0.0 0.58 10.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3748) GTP_EFTU PF00009.27 gi|386001013|ref|YP_005919312.1| - 1.1e-56 191.5 0.0 1.8e-56 190.8 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|386001013|ref|YP_005919312.1| - 1.6e-39 134.6 0.5 6.9e-39 132.6 0.2 2.2 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|386001013|ref|YP_005919312.1| - 2.6e-16 59.8 1.5 8.4e-16 58.1 1.5 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|386001013|ref|YP_005919312.1| - 2.6e-06 27.5 0.0 3.9e-05 23.7 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|386001013|ref|YP_005919312.1| - 0.00037 20.3 1.5 0.001 18.9 1.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 RsgA_GTPase PF03193.16 gi|386001013|ref|YP_005919312.1| - 0.0055 16.6 0.0 0.41 10.6 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase FeoB_N PF02421.18 gi|386001013|ref|YP_005919312.1| - 0.0077 15.8 0.1 0.17 11.4 0.1 2.6 2 1 0 2 2 2 1 Ferrous iron transport protein B AMA-1 PF02430.15 gi|386001013|ref|YP_005919312.1| - 0.055 12.4 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Apical membrane antigen 1 Gtr1_RagA PF04670.12 gi|386001013|ref|YP_005919312.1| - 0.064 12.6 0.0 0.23 10.8 0.0 1.8 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Dynamin_N PF00350.23 gi|386001013|ref|YP_005919312.1| - 0.14 12.3 0.0 17 5.4 0.0 2.5 1 1 1 2 2 2 0 Dynamin family Ribosomal_S10 PF00338.22 gi|386001014|ref|YP_005919313.1| - 1.4e-26 92.6 0.0 1.6e-26 92.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|386001014|ref|YP_005919313.1| - 0.058 14.2 0.0 0.12 13.2 0.0 1.5 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain Glu-tRNAGln PF02686.15 gi|386001015|ref|YP_005919314.1| - 2.3e-21 75.8 0.2 3e-21 75.5 0.2 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.21 gi|386001016|ref|YP_005919315.1| - 2.8e-154 514.4 0.0 3.1e-154 514.2 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.15 gi|386001017|ref|YP_005919316.1| - 1.9e-100 335.7 0.0 2.7e-100 335.3 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|386001017|ref|YP_005919316.1| - 3.8e-40 137.2 0.0 5.6e-40 136.6 0.0 1.3 1 0 0 1 1 1 1 GatB domain YqeY PF09424.10 gi|386001017|ref|YP_005919316.1| - 0.018 15.1 0.2 0.041 14.0 0.2 1.6 1 0 0 1 1 1 0 Yqey-like protein AMP-binding_C_2 PF14535.6 gi|386001019|ref|YP_005919318.1| - 3.1e-33 114.0 0.2 6.2e-33 113.0 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|386001019|ref|YP_005919318.1| - 1e-15 57.3 0.2 1.2e-14 53.7 0.0 2.2 2 0 0 2 2 2 1 AMP-binding enzyme GH3 PF03321.13 gi|386001019|ref|YP_005919318.1| - 0.00042 19.3 0.0 0.54 9.1 0.0 2.1 2 0 0 2 2 2 2 GH3 auxin-responsive promoter ACT PF01842.25 gi|386001020|ref|YP_005919319.1| - 5.5e-17 61.2 0.0 2.3e-09 36.9 0.0 2.4 2 1 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|386001020|ref|YP_005919319.1| - 2.5e-06 28.0 0.3 0.014 16.0 0.1 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.6 gi|386001020|ref|YP_005919319.1| - 2.1e-05 24.2 0.1 0.0058 16.4 0.0 2.8 2 1 0 2 2 2 2 ACT domain P-II PF00543.22 gi|386001020|ref|YP_005919319.1| - 0.056 14.0 0.2 8.9 7.0 0.1 2.3 2 0 0 2 2 2 0 Nitrogen regulatory protein P-II ACT_6 PF13740.6 gi|386001020|ref|YP_005919319.1| - 0.098 12.7 0.0 0.33 11.0 0.0 1.8 2 0 0 2 2 2 0 ACT domain DUF4227 PF14004.6 gi|386001021|ref|YP_005919320.1| - 8.7 6.4 9.3 2.4 8.2 0.3 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF4227) PKD PF00801.20 gi|386001023|ref|YP_005919322.1| - 1.7e-37 127.1 0.7 2.9e-08 33.4 0.2 4.7 4 0 0 4 4 4 4 PKD domain Transglut_core PF01841.19 gi|386001023|ref|YP_005919322.1| - 4.9e-06 27.0 0.0 1.3e-05 25.6 0.0 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily ChitinaseA_N PF08329.10 gi|386001023|ref|YP_005919322.1| - 0.0012 18.5 0.3 0.11 12.1 0.1 3.6 4 0 0 4 4 4 1 Chitinase A, N-terminal domain DUF4625 PF15418.6 gi|386001023|ref|YP_005919322.1| - 0.019 15.2 0.4 5.1 7.3 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4625) Colicin_E5 PF12106.8 gi|386001023|ref|YP_005919322.1| - 0.11 12.8 1.9 14 6.1 0.1 4.5 5 0 0 5 5 5 0 Colicin E5 ribonuclease domain TcfC PF16967.5 gi|386001023|ref|YP_005919322.1| - 0.14 11.7 0.1 3.1 7.3 0.0 2.8 4 0 0 4 4 4 0 E-set like domain DUF553 PF04473.12 gi|386001023|ref|YP_005919322.1| - 0.14 11.6 0.1 1 8.8 0.1 2.2 1 1 0 1 1 1 0 Transglutaminase-like domain REJ PF02010.15 gi|386001023|ref|YP_005919322.1| - 0.16 10.7 5.3 19 3.9 0.0 4.6 3 2 1 5 5 5 0 REJ domain DUF1314 PF07013.11 gi|386001023|ref|YP_005919322.1| - 8.8 6.2 9.3 27 4.6 0.0 4.5 6 0 0 6 6 6 0 Protein of unknown function (DUF1314) UPF0020 PF01170.18 gi|386001025|ref|YP_005919324.1| - 2.5e-26 92.6 0.0 2.4e-25 89.4 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|386001025|ref|YP_005919324.1| - 3.4e-09 37.0 0.0 6e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_25 PF13649.6 gi|386001025|ref|YP_005919324.1| - 6.9e-06 26.7 0.0 1.9e-05 25.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386001025|ref|YP_005919324.1| - 0.00026 21.6 0.1 0.00086 19.9 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|386001025|ref|YP_005919324.1| - 0.0026 17.5 0.0 0.0063 16.2 0.0 1.6 2 0 0 2 2 2 1 DNA methylase Methyltransf_31 PF13847.6 gi|386001025|ref|YP_005919324.1| - 0.0082 16.0 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|386001025|ref|YP_005919324.1| - 0.013 15.2 0.0 0.097 12.3 0.0 1.9 1 1 0 2 2 2 0 Conserved hypothetical protein 95 N6_Mtase PF02384.16 gi|386001025|ref|YP_005919324.1| - 0.087 12.1 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase APH PF01636.23 gi|386001026|ref|YP_005919325.1| - 7.2e-07 29.4 0.0 1.1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Phosphotransferase enzyme family AdoHcyase PF05221.17 gi|386001027|ref|YP_005919326.1| - 1e-64 218.6 0.0 6.5e-37 127.3 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|386001027|ref|YP_005919326.1| - 1.2e-50 171.8 0.4 2.6e-50 170.6 0.4 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|386001027|ref|YP_005919326.1| - 3.4e-08 33.1 0.2 7.8e-08 31.9 0.2 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|386001027|ref|YP_005919326.1| - 7.9e-07 28.8 0.0 2e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|386001027|ref|YP_005919326.1| - 0.0065 16.7 0.0 0.023 14.9 0.0 2.0 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|386001027|ref|YP_005919326.1| - 0.13 11.5 3.2 0.76 9.0 3.2 2.1 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lactamase_B_2 PF12706.7 gi|386001028|ref|YP_005919327.1| - 2.4e-25 89.2 0.0 3.3e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|386001028|ref|YP_005919327.1| - 2.5e-13 50.5 0.3 2e-12 47.5 0.3 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|386001028|ref|YP_005919327.1| - 0.00017 21.6 0.0 0.00034 20.6 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|386001028|ref|YP_005919327.1| - 0.025 14.0 0.0 1.4 8.4 0.0 2.2 1 1 0 2 2 2 0 Metallo-beta-lactamase superfamily domain FmdE PF02663.14 gi|386001029|ref|YP_005919328.1| - 4.4e-41 140.0 0.0 5.5e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|386001029|ref|YP_005919328.1| - 2.9e-05 23.9 3.3 2.9e-05 23.9 3.3 2.2 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.22 gi|386001029|ref|YP_005919328.1| - 0.0089 16.2 0.4 0.018 15.2 0.4 1.5 1 0 0 1 1 1 1 LIM domain Zn-ribbon_8 PF09723.10 gi|386001029|ref|YP_005919328.1| - 0.047 13.8 1.7 0.047 13.8 1.7 1.8 2 0 0 2 2 2 0 Zinc ribbon domain L51_S25_CI-B8 PF05047.16 gi|386001029|ref|YP_005919328.1| - 0.078 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain TF_Zn_Ribbon PF08271.12 gi|386001029|ref|YP_005919328.1| - 0.11 12.1 1.0 0.25 10.9 1.0 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding FYVE PF01363.21 gi|386001029|ref|YP_005919328.1| - 0.12 12.5 0.8 0.36 11.0 0.8 1.8 1 0 0 1 1 1 0 FYVE zinc finger Ribosomal_L44 PF00935.19 gi|386001029|ref|YP_005919328.1| - 0.15 12.5 0.8 0.38 11.3 0.0 2.0 1 1 1 2 2 2 0 Ribosomal protein L44 XPA_N PF01286.18 gi|386001029|ref|YP_005919328.1| - 0.27 11.3 3.8 2.1 8.5 0.4 2.3 2 0 0 2 2 2 0 XPA protein N-terminal DUF3467 PF11950.8 gi|386001030|ref|YP_005919329.1| - 1.3e-16 60.5 0.0 1.7e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) LolA PF03548.15 gi|386001030|ref|YP_005919329.1| - 0.00048 19.9 0.0 0.00051 19.8 0.0 1.2 1 0 0 1 1 1 1 Outer membrane lipoprotein carrier protein LolA TPR_1 PF00515.28 gi|386001031|ref|YP_005919330.1| - 6.7e-24 82.7 0.0 1.4e-10 40.5 0.1 4.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386001031|ref|YP_005919330.1| - 1.3e-22 78.0 0.1 1.5e-08 34.1 0.3 4.1 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386001031|ref|YP_005919330.1| - 2.7e-18 66.2 0.2 7.8e-10 39.1 0.1 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386001031|ref|YP_005919330.1| - 3.4e-17 62.8 0.6 1.8e-12 47.7 0.1 2.5 2 1 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386001031|ref|YP_005919330.1| - 1.5e-15 57.2 1.7 1.6e-08 34.7 0.2 3.9 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386001031|ref|YP_005919330.1| - 2.9e-15 55.7 0.1 2.6e-07 30.2 0.0 4.0 2 1 2 4 4 4 3 TPR repeat TPR_8 PF13181.6 gi|386001031|ref|YP_005919330.1| - 1.3e-14 53.1 0.0 2.9e-05 23.9 0.0 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001031|ref|YP_005919330.1| - 1.3e-13 50.9 4.6 1.1e-06 28.7 0.1 3.0 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001031|ref|YP_005919330.1| - 5e-13 48.7 4.4 0.00045 20.8 1.0 4.1 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001031|ref|YP_005919330.1| - 1.8e-10 40.0 0.2 0.06 13.4 0.0 3.9 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386001031|ref|YP_005919330.1| - 2.4e-10 40.1 0.2 5.8e-07 29.4 0.0 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386001031|ref|YP_005919330.1| - 4.6e-09 35.8 5.5 0.0078 16.1 0.3 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386001031|ref|YP_005919330.1| - 1.8e-07 31.3 0.0 0.16 12.6 0.1 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|386001031|ref|YP_005919330.1| - 3.5e-07 30.2 4.7 0.024 15.2 0.3 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat BTAD PF03704.17 gi|386001031|ref|YP_005919330.1| - 1e-06 29.2 1.9 0.004 17.6 0.0 2.5 1 1 2 3 3 3 2 Bacterial transcriptional activator domain ANAPC3 PF12895.7 gi|386001031|ref|YP_005919330.1| - 1e-05 25.6 0.0 0.0069 16.6 0.0 2.1 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 PPR PF01535.20 gi|386001031|ref|YP_005919330.1| - 0.00018 21.5 1.8 15 6.1 0.0 4.2 4 0 0 4 4 4 0 PPR repeat Fis1_TPR_C PF14853.6 gi|386001031|ref|YP_005919330.1| - 0.00055 20.0 0.0 0.67 10.1 0.0 2.9 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|386001031|ref|YP_005919330.1| - 0.0036 16.3 0.0 0.54 9.1 0.0 2.0 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|386001031|ref|YP_005919330.1| - 0.0078 16.2 0.0 0.024 14.7 0.0 1.7 1 1 1 2 2 2 1 Putative TPR-like repeat MIT PF04212.18 gi|386001031|ref|YP_005919330.1| - 0.0079 16.2 0.2 6.4 6.9 0.1 3.8 3 1 2 5 5 5 1 MIT (microtubule interacting and transport) domain Alkyl_sulf_dimr PF14863.6 gi|386001031|ref|YP_005919330.1| - 0.01 16.3 0.0 0.2 12.1 0.0 2.1 1 1 2 3 3 3 0 Alkyl sulfatase dimerisation DUF3856 PF12968.7 gi|386001031|ref|YP_005919330.1| - 0.011 15.8 0.4 0.97 9.5 0.0 2.9 1 1 2 3 3 3 0 Domain of Unknown Function (DUF3856) Wzy_C_2 PF11846.8 gi|386001031|ref|YP_005919330.1| - 0.012 15.6 0.1 0.84 9.5 0.1 2.1 1 1 1 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal Coatomer_E PF04733.14 gi|386001031|ref|YP_005919330.1| - 0.015 14.8 0.0 0.62 9.4 0.0 2.0 1 1 0 2 2 2 0 Coatomer epsilon subunit TPR_15 PF13429.6 gi|386001031|ref|YP_005919330.1| - 0.019 14.2 0.2 0.076 12.2 0.1 1.8 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|386001031|ref|YP_005919330.1| - 0.075 12.7 0.3 0.41 10.3 0.1 2.2 1 1 0 2 2 2 0 Tetratricopeptide repeat-like domain SpoOE-like PF09388.10 gi|386001031|ref|YP_005919330.1| - 0.2 11.6 0.2 0.36 10.8 0.2 1.4 1 0 0 1 1 1 0 Spo0E like sporulation regulatory protein AsnC_trans_reg PF01037.21 gi|386001032|ref|YP_005919331.1| - 1.7e-09 37.5 0.1 2e-09 37.3 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|386001032|ref|YP_005919331.1| - 0.061 13.4 0.3 0.079 13.0 0.3 1.2 1 0 0 1 1 1 0 NapD protein MutS_V PF00488.21 gi|386001033|ref|YP_005919332.1| - 1.3e-83 279.7 0.3 1.9e-83 279.1 0.3 1.3 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 gi|386001033|ref|YP_005919332.1| - 1.9e-41 140.8 0.0 3.9e-41 139.8 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 gi|386001033|ref|YP_005919332.1| - 8.3e-39 133.8 0.1 1.3e-38 133.2 0.1 1.3 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 gi|386001033|ref|YP_005919332.1| - 6e-31 106.7 0.0 1.1e-30 105.8 0.0 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|386001033|ref|YP_005919332.1| - 1.8e-18 67.2 0.0 3.4e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain II AAA_14 PF13173.6 gi|386001033|ref|YP_005919332.1| - 0.0016 18.4 0.0 0.0088 16.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|386001033|ref|YP_005919332.1| - 0.0089 15.6 0.0 0.022 14.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|386001033|ref|YP_005919332.1| - 0.13 12.7 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DNA_mis_repair PF01119.19 gi|386001034|ref|YP_005919333.1| - 3.3e-38 130.0 0.0 4.9e-38 129.5 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.11 gi|386001034|ref|YP_005919333.1| - 7.2e-36 123.2 0.0 1.4e-35 122.3 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.6 gi|386001034|ref|YP_005919333.1| - 1.8e-10 40.8 0.1 3.3e-10 39.9 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|386001034|ref|YP_005919333.1| - 3.1e-07 30.9 0.0 6e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FrhB_FdhB_C PF04432.13 gi|386001035|ref|YP_005919334.1| - 7.5e-27 94.0 0.0 1.4e-26 93.2 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|386001035|ref|YP_005919334.1| - 3.2e-18 65.6 0.0 8.9e-18 64.2 0.0 1.8 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.6 gi|386001035|ref|YP_005919334.1| - 9.5e-09 35.3 11.3 0.00041 20.4 1.2 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386001035|ref|YP_005919334.1| - 1.8e-08 34.8 5.5 1.8e-08 34.8 5.5 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386001035|ref|YP_005919334.1| - 3.4e-08 34.0 20.6 5.6e-07 30.1 10.3 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386001035|ref|YP_005919334.1| - 1.1e-07 31.8 9.3 0.0021 18.2 0.6 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386001035|ref|YP_005919334.1| - 3.1e-07 29.9 19.3 0.00047 19.9 4.0 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386001035|ref|YP_005919334.1| - 4.6e-07 30.2 8.5 9.8e-07 29.1 6.8 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001035|ref|YP_005919334.1| - 3.6e-06 26.8 19.6 0.0026 17.8 3.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|386001035|ref|YP_005919334.1| - 6.2e-06 26.4 3.0 0.023 14.9 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386001035|ref|YP_005919334.1| - 3.5e-05 24.2 11.2 0.0075 16.8 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|386001035|ref|YP_005919334.1| - 4.6e-05 23.5 9.5 0.025 14.7 0.6 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386001035|ref|YP_005919334.1| - 0.00011 22.0 19.0 0.00086 19.3 2.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|386001035|ref|YP_005919334.1| - 0.00031 20.5 5.8 0.07 12.9 0.7 2.3 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 gi|386001035|ref|YP_005919334.1| - 0.0019 18.5 19.9 0.055 14.0 1.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|386001035|ref|YP_005919334.1| - 0.0042 17.8 6.9 0.31 11.8 0.9 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|386001035|ref|YP_005919334.1| - 0.013 16.4 22.0 0.026 15.5 4.0 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386001035|ref|YP_005919334.1| - 0.045 14.7 16.8 0.59 11.1 14.7 3.0 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain c-SKI_SMAD_bind PF08782.10 gi|386001035|ref|YP_005919334.1| - 0.16 12.2 6.0 1.5 9.1 0.3 2.4 2 0 0 2 2 2 0 c-SKI Smad4 binding domain Fer4_22 PF17179.4 gi|386001035|ref|YP_005919334.1| - 0.24 12.3 9.6 0.75 10.7 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|386001036|ref|YP_005919335.1| - 7.9e-92 308.5 0.0 9.8e-92 308.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|386001036|ref|YP_005919335.1| - 4.1e-33 113.7 0.0 8.3e-33 112.7 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|386001036|ref|YP_005919335.1| - 1.5e-21 76.1 0.2 2.8e-21 75.3 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain AIRS_C PF02769.22 gi|386001037|ref|YP_005919336.1| - 7.9e-16 58.6 3.7 1.6e-15 57.6 3.7 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|386001037|ref|YP_005919336.1| - 8.6e-08 32.7 0.4 2e-07 31.6 0.4 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TFIIE_alpha PF02002.17 gi|386001038|ref|YP_005919337.1| - 2.8e-19 68.9 0.6 4e-19 68.4 0.6 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|386001038|ref|YP_005919337.1| - 0.00021 20.7 0.7 0.00049 19.6 0.7 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding FUR PF01475.19 gi|386001038|ref|YP_005919337.1| - 0.008 16.3 0.1 0.085 13.0 0.0 2.1 2 0 0 2 2 2 1 Ferric uptake regulator family HTH_9 PF08221.11 gi|386001038|ref|YP_005919337.1| - 0.027 14.6 0.0 0.053 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain RepL PF05732.11 gi|386001038|ref|YP_005919337.1| - 0.034 13.6 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_IclR PF09339.10 gi|386001038|ref|YP_005919337.1| - 0.046 13.5 0.1 0.26 11.1 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|386001039|ref|YP_005919338.1| - 0.062 13.2 0.0 0.15 12.0 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF2551 PF10826.8 gi|386001040|ref|YP_005919339.1| - 3.6e-29 100.8 0.2 4.6e-29 100.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.16 gi|386001040|ref|YP_005919339.1| - 0.024 15.0 0.0 0.033 14.6 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor DUF1758 PF05585.12 gi|386001040|ref|YP_005919339.1| - 0.026 14.3 0.1 0.031 14.0 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase (DUF1758) Mrr_cat PF04471.12 gi|386001041|ref|YP_005919340.1| - 3.6e-11 43.1 0.0 5.6e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease BRCT PF00533.26 gi|386001041|ref|YP_005919340.1| - 0.24 11.8 0.0 0.34 11.3 0.0 1.3 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain TPR_1 PF00515.28 gi|386001042|ref|YP_005919341.1| - 5.8e-56 184.2 8.5 1.4e-09 37.3 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386001042|ref|YP_005919341.1| - 1.6e-46 152.6 20.0 7.2e-07 28.8 0.0 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386001042|ref|YP_005919341.1| - 4e-43 142.0 2.7 8.9e-07 28.6 0.2 7.1 7 0 0 7 7 7 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386001042|ref|YP_005919341.1| - 3e-36 123.8 41.1 3.6e-11 43.5 6.5 4.3 3 1 2 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386001042|ref|YP_005919341.1| - 2e-33 113.8 7.7 5.9e-08 32.3 0.0 7.4 2 2 5 7 7 7 6 TPR repeat TPR_17 PF13431.6 gi|386001042|ref|YP_005919341.1| - 1.3e-29 100.4 1.4 0.00032 20.9 0.0 6.9 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386001042|ref|YP_005919341.1| - 2.8e-25 88.4 14.2 8.3e-07 29.2 2.0 5.4 4 2 1 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001042|ref|YP_005919341.1| - 5.1e-25 86.0 27.2 2.8e-05 24.6 1.1 7.1 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001042|ref|YP_005919341.1| - 4.9e-24 84.3 17.0 4.2e-07 30.0 2.1 5.1 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386001042|ref|YP_005919341.1| - 1.4e-22 79.9 19.2 2.2e-08 34.5 0.8 4.2 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001042|ref|YP_005919341.1| - 1.2e-16 59.4 6.7 0.002 18.0 0.1 6.3 6 1 0 6 6 6 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386001042|ref|YP_005919341.1| - 7.7e-12 45.0 11.1 0.011 16.4 0.4 6.9 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386001042|ref|YP_005919341.1| - 1.1e-10 41.0 23.9 0.025 14.4 0.2 7.2 7 0 0 7 7 7 4 Tetratricopeptide repeat DUF3856 PF12968.7 gi|386001042|ref|YP_005919341.1| - 8.1e-09 35.7 9.0 0.005 16.9 0.1 6.0 2 2 3 5 5 5 2 Domain of Unknown Function (DUF3856) ANAPC3 PF12895.7 gi|386001042|ref|YP_005919341.1| - 2.6e-08 34.0 4.0 0.00035 20.7 0.1 4.2 3 2 2 5 5 4 3 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.17 gi|386001042|ref|YP_005919341.1| - 7.8e-08 32.9 14.0 0.14 12.6 1.1 4.3 1 1 1 4 4 4 4 Bacterial transcriptional activator domain TPR_4 PF07721.14 gi|386001042|ref|YP_005919341.1| - 1.1e-07 31.7 24.7 0.62 10.9 0.9 7.0 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_15 PF13429.6 gi|386001042|ref|YP_005919341.1| - 7.8e-05 22.0 2.7 0.003 16.8 1.1 3.1 1 1 2 3 3 3 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|386001042|ref|YP_005919341.1| - 8.2e-05 21.7 0.0 1.4 7.8 0.0 3.5 2 1 2 4 4 4 2 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|386001042|ref|YP_005919341.1| - 0.0002 21.3 5.7 4.8 7.3 0.2 4.9 4 1 1 5 5 5 1 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.18 gi|386001042|ref|YP_005919341.1| - 0.00021 21.3 13.1 0.24 11.5 0.0 5.1 6 1 0 6 6 5 2 MIT (microtubule interacting and transport) domain TPR_5 PF12688.7 gi|386001042|ref|YP_005919341.1| - 0.00033 20.9 1.5 0.012 15.8 0.0 3.4 2 2 1 3 3 3 1 Tetratrico peptide repeat SHNi-TPR PF10516.9 gi|386001042|ref|YP_005919341.1| - 0.00071 19.0 0.2 2.1 7.9 0.0 3.3 3 0 0 3 3 3 2 SHNi-TPR TPR_3 PF07720.12 gi|386001042|ref|YP_005919341.1| - 0.0013 18.7 4.1 2.8 8.0 0.0 4.0 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|386001042|ref|YP_005919341.1| - 0.0015 18.0 0.2 2.2 7.6 0.0 3.0 2 1 1 3 3 3 1 MalT-like TPR region Wzy_C_2 PF11846.8 gi|386001042|ref|YP_005919341.1| - 0.0053 16.7 0.4 1.7 8.5 0.0 3.1 2 1 1 3 3 3 1 Virulence factor membrane-bound polymerase, C-terminal SRP_TPR_like PF17004.5 gi|386001042|ref|YP_005919341.1| - 0.0067 16.4 0.0 0.12 12.4 0.0 2.7 1 1 1 2 2 2 1 Putative TPR-like repeat TPR_20 PF14561.6 gi|386001042|ref|YP_005919341.1| - 0.13 12.6 3.2 0.32 11.4 0.1 2.9 2 1 1 3 3 2 0 Tetratricopeptide repeat SNAP PF14938.6 gi|386001042|ref|YP_005919341.1| - 0.28 10.6 1.2 11 5.3 0.1 3.0 2 2 0 2 2 2 0 Soluble NSF attachment protein, SNAP PPR PF01535.20 gi|386001042|ref|YP_005919341.1| - 0.9 9.9 9.0 32 5.1 0.0 5.1 7 0 0 7 7 4 0 PPR repeat LTD PF00932.19 gi|386001043|ref|YP_005919342.1| - 1.6e-12 47.8 0.0 3.5e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 Lamin Tail Domain SNase PF00565.17 gi|386001043|ref|YP_005919342.1| - 6e-05 23.5 0.0 9e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue TPR_1 PF00515.28 gi|386001044|ref|YP_005919343.1| - 2e-58 191.9 8.6 1e-11 44.1 0.1 7.2 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386001044|ref|YP_005919343.1| - 9.8e-54 178.8 14.6 1.3e-12 47.2 0.0 6.2 1 1 5 6 6 6 6 TPR repeat TPR_16 PF13432.6 gi|386001044|ref|YP_005919343.1| - 2e-49 166.0 40.1 1.3e-12 48.1 0.7 4.9 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386001044|ref|YP_005919343.1| - 7.1e-47 153.8 15.1 1e-08 34.6 0.1 7.0 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386001044|ref|YP_005919343.1| - 1.7e-38 127.6 4.2 2.5e-07 30.4 0.0 6.7 7 0 0 7 7 6 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386001044|ref|YP_005919343.1| - 3.1e-38 127.4 12.9 6.3e-09 35.6 0.0 7.6 8 0 0 8 8 7 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001044|ref|YP_005919343.1| - 7.3e-29 99.7 20.9 8.6e-12 45.0 2.3 5.0 2 2 4 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001044|ref|YP_005919343.1| - 1e-28 97.5 22.5 1.1e-05 25.8 0.2 6.3 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386001044|ref|YP_005919343.1| - 3e-26 91.5 18.9 5e-10 39.5 0.2 5.3 1 1 3 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386001044|ref|YP_005919343.1| - 1.9e-24 85.9 9.1 6.9e-08 32.9 0.3 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001044|ref|YP_005919343.1| - 5.9e-22 76.0 12.1 0.0011 18.9 0.0 6.3 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_4 PF07721.14 gi|386001044|ref|YP_005919343.1| - 2e-13 49.6 12.8 0.27 12.0 0.2 6.8 6 0 0 6 6 6 4 Tetratricopeptide repeat BTAD PF03704.17 gi|386001044|ref|YP_005919343.1| - 3.2e-12 47.1 11.6 0.00084 19.8 1.1 4.2 2 1 2 4 4 4 3 Bacterial transcriptional activator domain TPR_10 PF13374.6 gi|386001044|ref|YP_005919343.1| - 2.9e-11 42.8 25.9 0.056 13.3 0.1 6.7 7 0 0 7 7 6 5 Tetratricopeptide repeat DUF3856 PF12968.7 gi|386001044|ref|YP_005919343.1| - 5.6e-10 39.5 4.1 0.17 12.0 0.2 5.5 1 1 3 4 4 4 4 Domain of Unknown Function (DUF3856) ANAPC3 PF12895.7 gi|386001044|ref|YP_005919343.1| - 6.1e-10 39.2 0.3 0.0016 18.6 0.2 2.9 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.6 gi|386001044|ref|YP_005919343.1| - 2.3e-09 36.9 4.2 4e-05 23.0 1.3 2.9 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386001044|ref|YP_005919343.1| - 5.2e-07 29.9 12.6 0.38 11.5 0.1 6.2 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_3 PF07720.12 gi|386001044|ref|YP_005919343.1| - 2e-06 27.7 1.5 0.88 9.6 0.0 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat PPR PF01535.20 gi|386001044|ref|YP_005919343.1| - 2.4e-06 27.4 2.5 12 6.4 0.1 5.9 6 0 0 6 6 6 0 PPR repeat MIT PF04212.18 gi|386001044|ref|YP_005919343.1| - 4.8e-05 23.3 8.9 1.9 8.6 0.0 5.3 5 0 0 5 5 5 1 MIT (microtubule interacting and transport) domain NARP1 PF12569.8 gi|386001044|ref|YP_005919343.1| - 8.3e-05 21.7 0.0 0.015 14.2 0.0 3.0 1 1 1 3 3 3 1 NMDA receptor-regulated protein 1 TPR_20 PF14561.6 gi|386001044|ref|YP_005919343.1| - 0.00014 22.1 0.6 20 5.6 0.0 4.3 1 1 2 4 4 4 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|386001044|ref|YP_005919343.1| - 0.00016 21.7 4.4 3 8.0 0.0 5.0 6 0 0 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat Coatomer_E PF04733.14 gi|386001044|ref|YP_005919343.1| - 0.0002 20.8 0.0 0.99 8.8 0.0 2.9 1 1 2 3 3 3 3 Coatomer epsilon subunit NRBF2_MIT PF17169.4 gi|386001044|ref|YP_005919343.1| - 0.00039 20.6 1.0 18 5.6 0.0 4.4 4 1 1 5 5 4 0 MIT domain of nuclear receptor-binding factor 2 SNAP PF14938.6 gi|386001044|ref|YP_005919343.1| - 0.00059 19.3 0.4 0.074 12.5 0.0 3.0 2 1 0 3 3 3 1 Soluble NSF attachment protein, SNAP TPR_21 PF09976.9 gi|386001044|ref|YP_005919343.1| - 0.013 15.3 7.3 1.4 8.6 0.1 4.1 1 1 2 4 4 4 0 Tetratricopeptide repeat-like domain FAT PF02259.23 gi|386001044|ref|YP_005919343.1| - 0.013 14.7 0.6 19 4.4 0.0 3.3 1 1 2 4 4 4 0 FAT domain SRP_TPR_like PF17004.5 gi|386001044|ref|YP_005919343.1| - 0.042 13.9 0.0 1.7 8.7 0.0 3.0 1 1 3 4 4 4 0 Putative TPR-like repeat RPN7 PF10602.9 gi|386001044|ref|YP_005919343.1| - 0.15 11.8 0.3 11 5.7 0.0 3.5 4 1 1 5 5 4 0 26S proteasome subunit RPN7 NdhL PF10716.9 gi|386001047|ref|YP_005919346.1| - 0.17 11.9 1.6 0.2 11.6 0.1 1.9 2 0 0 2 2 2 0 NADH dehydrogenase transmembrane subunit Y_Y_Y PF07495.13 gi|386001048|ref|YP_005919347.1| - 1.2e-06 28.4 15.1 5.7 7.0 0.1 8.1 7 0 0 7 7 7 4 Y_Y_Y domain He_PIG PF05345.12 gi|386001048|ref|YP_005919347.1| - 0.0063 16.7 3.8 14 5.9 0.5 7.2 8 0 0 8 8 8 1 Putative Ig domain EB1_binding PF05937.11 gi|386001048|ref|YP_005919347.1| - 0.97 10.0 18.5 20 5.7 0.9 4.4 4 0 0 4 4 4 0 EB-1 Binding Domain CBM_20 PF00686.19 gi|386001048|ref|YP_005919347.1| - 2.4 8.1 14.8 14 5.6 0.0 5.7 7 0 0 7 7 7 0 Starch binding domain Big_9 PF17963.1 gi|386001049|ref|YP_005919348.1| - 1.2e-10 42.0 12.4 0.0023 18.7 1.0 3.3 3 0 0 3 3 3 3 Bacterial Ig domain Cadherin_4 PF17803.1 gi|386001049|ref|YP_005919348.1| - 0.00045 20.8 9.5 0.72 10.5 0.2 3.4 3 0 0 3 3 3 3 Bacterial cadherin-like domain CBM_20 PF00686.19 gi|386001049|ref|YP_005919348.1| - 0.0054 16.6 0.0 12 5.8 0.0 3.3 3 0 0 3 3 3 1 Starch binding domain Y_Y_Y PF07495.13 gi|386001049|ref|YP_005919348.1| - 0.0085 16.0 0.0 0.17 11.8 0.1 2.7 3 0 0 3 3 3 1 Y_Y_Y domain DUF2909 PF11137.8 gi|386001049|ref|YP_005919348.1| - 0.13 12.3 1.6 0.22 11.5 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2909) Fae PF08714.11 gi|386001050|ref|YP_005919349.1| - 1e-70 236.8 1.4 1.1e-70 236.6 1.4 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) DUF4291 PF14124.6 gi|386001050|ref|YP_005919349.1| - 0.13 12.1 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4291) Flavoprotein PF02441.19 gi|386001051|ref|YP_005919350.1| - 7.1e-15 55.1 0.0 3.4e-14 52.9 0.0 1.8 2 0 0 2 2 2 1 Flavoprotein Fer4 PF00037.27 gi|386001051|ref|YP_005919350.1| - 5.7e-09 35.4 13.2 5.5e-06 26.0 1.4 3.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386001051|ref|YP_005919350.1| - 1.7e-07 30.9 12.2 0.00085 19.3 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386001051|ref|YP_005919350.1| - 3.6e-07 30.7 4.6 0.0082 16.7 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386001051|ref|YP_005919350.1| - 1.7e-06 28.1 4.0 0.026 14.7 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386001051|ref|YP_005919350.1| - 0.00012 22.9 6.5 0.008 17.1 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|386001051|ref|YP_005919350.1| - 0.00016 22.2 3.2 0.14 12.7 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001051|ref|YP_005919350.1| - 0.00034 20.6 10.1 0.028 14.5 0.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386001051|ref|YP_005919350.1| - 0.0015 18.5 13.8 0.022 14.8 3.9 2.8 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386001051|ref|YP_005919350.1| - 0.21 11.8 11.0 3.7 7.8 11.0 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386001051|ref|YP_005919350.1| - 1.3 9.8 12.0 2 9.2 0.3 3.4 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|386001051|ref|YP_005919350.1| - 2.4 8.9 14.2 1.1 9.9 2.1 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386001051|ref|YP_005919350.1| - 3.1 8.3 10.5 2.9 8.4 0.8 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386001051|ref|YP_005919350.1| - 6.9 7.3 11.4 4.8 7.8 0.7 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|386001051|ref|YP_005919350.1| - 9.2 7.5 15.6 6.7 7.9 4.8 3.3 2 1 0 2 2 2 0 4Fe-4S binding domain GATase PF00117.28 gi|386001052|ref|YP_005919351.1| - 2.8e-34 118.5 0.0 3.2e-34 118.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|386001052|ref|YP_005919351.1| - 3.6e-14 53.0 0.9 3.7e-13 49.7 0.4 2.5 2 1 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|386001052|ref|YP_005919351.1| - 0.048 13.2 0.5 0.18 11.4 0.5 1.9 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CxxCxxCC PF03692.15 gi|386001053|ref|YP_005919352.1| - 1.2e-09 38.7 0.8 4.3e-09 36.9 0.9 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Pentapeptide PF00805.22 gi|386001054|ref|YP_005919353.1| - 1.7e-31 107.4 26.3 1e-11 44.2 1.5 4.7 1 1 2 4 4 4 4 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|386001054|ref|YP_005919353.1| - 6.1e-10 39.1 0.0 1.6e-05 25.0 0.0 2.8 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|386001054|ref|YP_005919353.1| - 7.9e-10 38.7 0.0 0.0081 16.3 0.0 4.3 2 2 2 4 4 4 4 Pentapeptide repeats (9 copies) Hfq PF17209.3 gi|386001055|ref|YP_005919354.1| - 0.0001 21.8 0.0 0.00013 21.5 0.0 1.1 1 0 0 1 1 1 1 Hfq protein Thg1 PF04446.12 gi|386001056|ref|YP_005919355.1| - 1.6e-16 60.5 0.0 2.2e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thg1C PF14413.6 gi|386001056|ref|YP_005919355.1| - 1.8e-06 28.1 0.0 2.4e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain PRC PF05239.16 gi|386001057|ref|YP_005919356.1| - 1.1e-12 47.9 1.6 1.2e-12 47.7 1.6 1.2 1 0 0 1 1 1 1 PRC-barrel domain Big_9 PF17963.1 gi|386001058|ref|YP_005919357.1| - 2.2e-09 37.9 11.5 0.022 15.5 0.2 4.4 4 3 0 4 4 4 3 Bacterial Ig domain T2SS-T3SS_pil_N PF13629.6 gi|386001058|ref|YP_005919357.1| - 0.27 11.0 1.7 24 4.7 0.1 2.6 2 0 0 2 2 2 0 Pilus formation protein N terminal region DUF11 PF01345.18 gi|386001059|ref|YP_005919358.1| - 0.0047 17.2 0.0 0.0093 16.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF11 Stirrup PF09061.6 gi|386001059|ref|YP_005919358.1| - 0.086 13.1 0.1 0.92 9.8 0.0 2.3 2 0 0 2 2 2 0 Stirrup GMP_synt_C PF00958.22 gi|386001060|ref|YP_005919359.1| - 3.2e-32 110.5 0.0 5.8e-32 109.6 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|386001060|ref|YP_005919359.1| - 5.7e-12 45.3 0.0 1.9e-11 43.6 0.0 1.7 1 1 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|386001060|ref|YP_005919359.1| - 0.0017 17.9 0.0 0.0044 16.5 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|386001060|ref|YP_005919359.1| - 0.0024 16.7 0.0 0.02 13.7 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase ThiI PF02568.14 gi|386001060|ref|YP_005919359.1| - 0.013 15.1 0.0 0.031 13.9 0.0 1.6 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 gi|386001060|ref|YP_005919359.1| - 0.017 14.5 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase Asn_synthase PF00733.21 gi|386001060|ref|YP_005919359.1| - 0.028 14.1 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase IGPD PF00475.18 gi|386001061|ref|YP_005919360.1| - 3.4e-44 150.6 0.1 4.5e-44 150.2 0.1 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|386001062|ref|YP_005919361.1| - 1.3e-66 224.4 0.5 1.4e-66 224.2 0.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|386001062|ref|YP_005919361.1| - 2.7e-06 26.9 1.7 0.00035 20.0 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|386001062|ref|YP_005919361.1| - 5.3e-06 26.0 8.5 4.5e-05 23.0 2.7 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 gi|386001062|ref|YP_005919361.1| - 3.4e-05 23.1 0.2 0.014 14.5 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|386001062|ref|YP_005919361.1| - 7.4e-05 22.1 0.3 0.0072 15.6 0.1 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NanE PF04131.14 gi|386001062|ref|YP_005919361.1| - 0.0011 18.3 0.7 0.0059 15.8 0.0 2.0 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.17 gi|386001062|ref|YP_005919361.1| - 0.0011 18.5 0.0 0.0021 17.6 0.0 1.5 1 0 0 1 1 1 1 PcrB family TMP-TENI PF02581.17 gi|386001062|ref|YP_005919361.1| - 0.0018 17.6 2.2 0.021 14.2 0.5 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase IMPDH PF00478.25 gi|386001062|ref|YP_005919361.1| - 0.043 12.8 4.7 0.32 9.9 5.2 1.8 1 1 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|386001062|ref|YP_005919361.1| - 0.054 12.5 6.6 0.073 12.1 0.4 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IGPS PF00218.21 gi|386001062|ref|YP_005919361.1| - 0.082 12.1 0.0 1.2 8.2 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Glu_synthase PF01645.17 gi|386001062|ref|YP_005919361.1| - 0.12 11.5 0.1 0.2 10.7 0.1 1.3 1 0 0 1 1 1 0 Conserved region in glutamate synthase DEAD_assoc PF08494.11 gi|386001063|ref|YP_005919362.1| - 9.8e-31 107.0 0.1 2.1e-30 106.0 0.1 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|386001063|ref|YP_005919362.1| - 1.2e-29 103.3 0.0 2.7e-29 102.2 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|386001063|ref|YP_005919362.1| - 6.2e-23 81.3 0.0 6.6e-21 74.7 0.1 2.9 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|386001063|ref|YP_005919362.1| - 2e-05 24.7 0.0 0.025 14.6 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|386001063|ref|YP_005919362.1| - 0.018 15.4 0.1 2.9 8.2 0.0 3.1 3 0 0 3 3 3 0 AAA domain SNF2_N PF00176.23 gi|386001063|ref|YP_005919362.1| - 0.019 13.7 0.0 0.027 13.2 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_25 PF13481.6 gi|386001063|ref|YP_005919362.1| - 0.023 14.2 2.0 0.54 9.8 0.0 3.4 3 0 0 3 3 3 0 AAA domain YdjO PF14169.6 gi|386001063|ref|YP_005919362.1| - 0.048 13.4 1.6 0.11 12.2 1.6 1.5 1 0 0 1 1 1 0 Cold-inducible protein YdjO AAA_22 PF13401.6 gi|386001063|ref|YP_005919362.1| - 0.091 13.0 0.0 16 5.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain FliG_N PF14842.6 gi|386001063|ref|YP_005919362.1| - 0.13 12.8 0.1 40 4.8 0.0 3.2 3 0 0 3 3 2 0 FliG N-terminal domain WcbI PF18588.1 gi|386001063|ref|YP_005919362.1| - 0.15 11.6 1.2 0.61 9.7 0.2 2.2 2 0 0 2 2 2 0 Polysaccharide biosynthesis enzyme WcbI LDcluster4 PF18306.1 gi|386001064|ref|YP_005919363.1| - 1.5e-41 141.6 4.7 1.8e-41 141.4 4.7 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|386001064|ref|YP_005919363.1| - 1e-07 32.1 0.8 1.4e-07 31.7 0.4 1.4 1 1 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|386001064|ref|YP_005919363.1| - 1e-05 24.9 1.8 2e-05 24.0 1.5 1.6 1 1 1 2 2 2 1 DNA recombination-mediator protein A tRNA-synt_His PF13393.6 gi|386001065|ref|YP_005919364.1| - 1.3e-59 202.1 3.5 6.6e-58 196.4 3.5 2.1 1 1 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|386001065|ref|YP_005919364.1| - 1.7e-13 51.0 0.0 2.5e-13 50.4 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|386001065|ref|YP_005919364.1| - 1.2e-10 41.4 0.3 1.1e-09 38.3 0.0 2.3 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|386001065|ref|YP_005919364.1| - 9.1e-05 21.7 0.2 0.018 14.1 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|386001065|ref|YP_005919364.1| - 0.00026 20.6 0.0 0.0018 17.8 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|386001065|ref|YP_005919364.1| - 0.056 12.9 0.0 0.35 10.3 0.0 2.0 1 1 0 1 1 1 0 Phenylalanyl tRNA synthetase beta chain CLM domain TBP PF00352.21 gi|386001066|ref|YP_005919365.1| - 6.1e-56 186.3 0.3 5.5e-27 93.5 0.2 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|386001066|ref|YP_005919365.1| - 2.4e-09 37.2 0.0 0.00063 19.8 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Saccharop_dh_N PF04455.12 gi|386001067|ref|YP_005919366.1| - 3.4e-35 120.5 0.1 9.6e-35 119.0 0.0 1.8 2 0 0 2 2 2 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|386001067|ref|YP_005919366.1| - 0.001 18.8 0.4 0.026 14.3 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Lig_C PF18330.1 gi|386001068|ref|YP_005919367.1| - 6.8e-43 145.6 0.9 1.9e-42 144.2 0.2 2.1 2 0 0 2 2 2 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|386001068|ref|YP_005919367.1| - 4.4e-13 49.8 0.0 7.7e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|386001068|ref|YP_005919367.1| - 0.0039 16.9 0.0 1.2 8.8 0.0 2.3 2 0 0 2 2 2 2 ATP dependent DNA ligase domain CBS PF00571.28 gi|386001069|ref|YP_005919368.1| - 4.1e-40 136.0 11.6 1.4e-10 41.4 0.3 4.1 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.14 gi|386001069|ref|YP_005919368.1| - 0.05 14.1 0.0 23 5.5 0.0 2.9 2 1 1 3 3 3 0 Ribosomal protein L9, C-terminal domain DUF746 PF05344.11 gi|386001069|ref|YP_005919368.1| - 0.087 12.7 0.0 0.94 9.4 0.0 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) CBS PF00571.28 gi|386001070|ref|YP_005919369.1| - 2e-44 149.8 14.0 6.9e-15 55.2 0.1 4.3 4 0 0 4 4 4 4 CBS domain Acetyltransf_10 PF13673.7 gi|386001070|ref|YP_005919369.1| - 0.18 11.7 0.0 5.4 7.0 0.0 2.9 4 0 0 4 4 4 0 Acetyltransferase (GNAT) domain CBS PF00571.28 gi|386001071|ref|YP_005919370.1| - 6.4e-47 157.8 5.1 1.5e-13 51.0 0.1 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|386001072|ref|YP_005919371.1| - 1.8e-48 162.8 8.5 2.3e-13 50.3 0.2 4.1 4 0 0 4 4 4 4 CBS domain PRC PF05239.16 gi|386001072|ref|YP_005919371.1| - 0.00039 20.4 2.6 0.14 12.2 0.1 2.7 3 0 0 3 3 3 2 PRC-barrel domain CBS PF00571.28 gi|386001073|ref|YP_005919372.1| - 1.7e-23 82.8 4.6 3.8e-16 59.3 0.5 2.3 2 0 0 2 2 2 2 CBS domain MreC PF04085.14 gi|386001073|ref|YP_005919372.1| - 0.1 12.5 0.9 8.5 6.3 0.1 2.2 2 0 0 2 2 2 0 rod shape-determining protein MreC RecR PF02132.15 gi|386001073|ref|YP_005919372.1| - 0.15 11.7 1.8 0.38 10.3 1.8 1.7 1 0 0 1 1 1 0 RecR protein MoCF_biosynth PF00994.24 gi|386001074|ref|YP_005919373.1| - 1.2e-26 93.1 0.0 1.4e-26 92.9 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain CGGC PF08821.11 gi|386001075|ref|YP_005919374.1| - 2e-16 60.1 0.0 2.1e-16 60.0 0.0 1.0 1 0 0 1 1 1 1 CGGC domain Pterin_bind PF00809.22 gi|386001075|ref|YP_005919374.1| - 0.088 12.5 0.0 0.1 12.2 0.0 1.1 1 0 0 1 1 1 0 Pterin binding enzyme APH PF01636.23 gi|386001076|ref|YP_005919375.1| - 2.6e-10 40.6 0.2 2.1e-05 24.5 0.1 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.22 gi|386001076|ref|YP_005919375.1| - 4.5e-09 36.2 0.0 6.8e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|386001076|ref|YP_005919375.1| - 1.5e-06 27.8 0.0 1.5e-05 24.4 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|386001076|ref|YP_005919375.1| - 2.5e-05 23.8 0.0 5.8e-05 22.6 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|386001076|ref|YP_005919375.1| - 7.9e-05 22.4 0.0 9.8e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.17 gi|386001076|ref|YP_005919375.1| - 0.085 12.1 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein tyrosine kinase EcKinase PF02958.20 gi|386001076|ref|YP_005919375.1| - 0.089 12.1 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase Choline_kinase PF01633.20 gi|386001076|ref|YP_005919375.1| - 0.11 12.1 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Choline/ethanolamine kinase DUF4135 PF13575.6 gi|386001076|ref|YP_005919375.1| - 0.16 11.3 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4135) Alba PF01918.21 gi|386001077|ref|YP_005919376.1| - 7.2e-19 67.4 0.3 9.2e-19 67.0 0.3 1.1 1 0 0 1 1 1 1 Alba DUF4097 PF13349.6 gi|386001077|ref|YP_005919376.1| - 0.021 14.2 0.2 0.024 14.0 0.2 1.1 1 0 0 1 1 1 0 Putative adhesin Rpp20 PF12328.8 gi|386001077|ref|YP_005919376.1| - 0.025 14.5 0.1 0.03 14.3 0.1 1.4 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Formyl_trans_N PF00551.19 gi|386001078|ref|YP_005919377.1| - 8.7e-51 172.2 0.0 9.9e-51 172.0 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase ubiquitin PF00240.23 gi|386001078|ref|YP_005919377.1| - 0.0096 15.7 0.0 0.03 14.1 0.0 1.9 1 1 1 2 2 2 1 Ubiquitin family HAD PF12710.7 gi|386001078|ref|YP_005919377.1| - 0.15 12.4 1.1 0.76 10.1 0.1 2.3 1 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase HIT PF01230.23 gi|386001079|ref|YP_005919378.1| - 4.3e-12 46.6 0.0 6.2e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|386001079|ref|YP_005919378.1| - 1.7e-06 28.5 0.0 2.4e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|386001079|ref|YP_005919378.1| - 0.00027 20.8 0.1 0.00041 20.2 0.1 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 GH114_assoc PF14741.6 gi|386001080|ref|YP_005919379.1| - 0.13 12.4 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 N-terminal glycosyl-hydrolase-114-associated domain DUF523 PF04463.12 gi|386001081|ref|YP_005919380.1| - 2e-05 24.6 0.0 4.8e-05 23.4 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF523) bPH_3 PF14470.6 gi|386001082|ref|YP_005919381.1| - 0.061 13.7 0.1 0.08 13.3 0.1 1.2 1 0 0 1 1 1 0 Bacterial PH domain DUF1297 PF06973.12 gi|386001083|ref|YP_005919382.1| - 2.7e-77 258.6 0.0 3.7e-77 258.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|386001083|ref|YP_005919382.1| - 3.8e-46 156.0 0.0 6.2e-46 155.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) GXGXG PF01493.19 gi|386001084|ref|YP_005919383.1| - 1.2e-07 31.5 21.4 4.2e-06 26.5 10.1 4.0 1 1 1 2 2 2 2 GXGXG motif Amidohydro_3 PF07969.11 gi|386001085|ref|YP_005919384.1| - 2.9e-84 284.2 0.4 3.5e-84 284.0 0.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|386001085|ref|YP_005919384.1| - 0.016 14.5 0.0 5.3 6.2 0.0 2.7 3 0 0 3 3 3 0 Amidohydrolase family Cupin_2 PF07883.11 gi|386001085|ref|YP_005919384.1| - 0.03 14.0 0.1 1.3 8.8 0.0 2.6 2 0 0 2 2 2 0 Cupin domain Molybdopterin PF00384.22 gi|386001086|ref|YP_005919385.1| - 2.1e-16 60.0 0.0 6.7e-15 55.0 0.0 2.3 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|386001086|ref|YP_005919385.1| - 0.005 16.6 0.7 1.6 8.4 0.2 3.7 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain Molydop_binding PF01568.21 gi|386001087|ref|YP_005919386.1| - 1.1e-10 41.6 0.0 1.4e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Aconitase_C PF00694.19 gi|386001088|ref|YP_005919387.1| - 3.5e-19 69.4 0.1 1.2e-18 67.8 0.2 1.6 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|386001088|ref|YP_005919387.1| - 0.0023 17.6 0.0 0.0057 16.3 0.0 1.7 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.20 gi|386001089|ref|YP_005919388.1| - 3e-99 332.5 0.0 3.4e-99 332.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase RNA_pol_Rpb5_C PF01191.19 gi|386001090|ref|YP_005919389.1| - 2e-28 98.0 0.0 2.2e-28 97.9 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|386001091|ref|YP_005919390.1| - 2.4e-52 177.4 0.1 2.9e-52 177.1 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|386001091|ref|YP_005919390.1| - 6.4e-27 94.4 0.1 9.6e-27 93.8 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|386001091|ref|YP_005919390.1| - 2.8e-26 91.5 0.0 5.2e-26 90.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 Acetate_kinase PF00871.17 gi|386001091|ref|YP_005919390.1| - 0.14 10.9 0.0 0.23 10.1 0.0 1.2 1 0 0 1 1 1 0 Acetokinase family RNA_pol_Rpb2_6 PF00562.28 gi|386001092|ref|YP_005919391.1| - 5.1e-123 411.0 0.0 6.5e-123 410.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|386001092|ref|YP_005919391.1| - 2.3e-30 104.8 0.1 5.2e-30 103.7 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|386001092|ref|YP_005919391.1| - 2.4e-20 72.5 1.2 4.1e-20 71.8 0.4 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|386001092|ref|YP_005919391.1| - 3.7e-09 37.0 6.4 1.4e-08 35.1 6.4 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Nudix_N_2 PF14803.6 gi|386001092|ref|YP_005919391.1| - 0.1 12.5 0.2 22 5.1 0.0 2.7 2 0 0 2 2 2 0 Nudix N-terminal RecR PF02132.15 gi|386001092|ref|YP_005919391.1| - 0.14 11.8 1.9 0.81 9.3 0.1 2.3 1 1 1 2 2 2 0 RecR protein Y1_Tnp PF01797.16 gi|386001092|ref|YP_005919391.1| - 0.24 11.5 0.0 0.4 10.8 0.0 1.3 1 0 0 1 1 1 0 Transposase IS200 like Auto_anti-p27 PF06677.12 gi|386001092|ref|YP_005919391.1| - 1 9.6 4.1 0.68 10.1 1.6 2.0 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_Rpb1_1 PF04997.12 gi|386001093|ref|YP_005919392.1| - 7.6e-104 347.4 0.0 1.1e-103 346.9 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|386001093|ref|YP_005919392.1| - 3.1e-69 232.4 0.1 4.7e-69 231.9 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|386001093|ref|YP_005919392.1| - 2.9e-32 111.8 0.0 5.5e-32 110.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|386001093|ref|YP_005919392.1| - 7.2e-32 109.6 0.0 1.6e-31 108.5 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|386001093|ref|YP_005919392.1| - 2.1e-27 96.3 0.0 3.3e-27 95.6 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_5 PF04998.17 gi|386001094|ref|YP_005919393.1| - 1.5e-54 185.2 0.2 1.9e-54 184.9 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Secretin_N PF03958.17 gi|386001094|ref|YP_005919393.1| - 0.034 14.5 0.1 0.084 13.3 0.1 1.7 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain NAC PF01849.18 gi|386001094|ref|YP_005919393.1| - 0.14 12.2 0.2 0.36 10.8 0.2 1.7 1 0 0 1 1 1 0 NAC domain Ribosomal_L7Ae PF01248.26 gi|386001095|ref|YP_005919394.1| - 9e-13 47.8 0.0 1.1e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Ysc84 PF04366.12 gi|386001095|ref|YP_005919394.1| - 0.054 13.2 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Las17-binding protein actin regulator KH_2 PF07650.17 gi|386001096|ref|YP_005919395.1| - 3.4e-22 78.1 4.8 9.1e-16 57.5 1.4 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|386001096|ref|YP_005919395.1| - 1.5e-15 57.0 5.1 1.9e-15 56.7 2.2 2.0 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|386001096|ref|YP_005919395.1| - 8.4e-10 38.4 1.1 8.5e-05 22.4 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|386001096|ref|YP_005919395.1| - 0.00012 21.8 3.4 0.00095 18.9 1.3 2.4 2 0 0 2 2 2 1 KH domain DUF3843 PF12954.7 gi|386001096|ref|YP_005919395.1| - 0.032 13.2 0.0 0.04 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3843) Ribosom_S12_S23 PF00164.25 gi|386001097|ref|YP_005919396.1| - 8.9e-46 154.2 0.8 1e-45 154.0 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|386001098|ref|YP_005919397.1| - 2.8e-40 137.4 4.4 3.5e-40 137.1 4.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Pyr_redox_2 PF07992.14 gi|386001099|ref|YP_005919398.1| - 2.5e-41 141.9 0.1 3.1e-41 141.5 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|386001099|ref|YP_005919398.1| - 1.9e-16 60.4 1.4 3.4e-12 46.8 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|386001099|ref|YP_005919398.1| - 1.8e-05 24.5 1.3 0.48 10.0 0.0 3.1 2 1 1 3 3 3 2 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|386001099|ref|YP_005919398.1| - 0.00018 20.8 0.0 0.13 11.4 0.0 2.1 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|386001099|ref|YP_005919398.1| - 0.00075 19.7 0.3 1 9.6 0.0 2.8 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|386001099|ref|YP_005919398.1| - 0.011 15.8 0.2 6.8 6.7 0.1 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|386001099|ref|YP_005919398.1| - 0.035 13.3 0.1 0.63 9.2 0.0 2.3 2 0 0 2 2 2 0 Thi4 family Lycopene_cycl PF05834.12 gi|386001099|ref|YP_005919398.1| - 0.12 11.4 0.4 1.1 8.2 0.1 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Chorismate_synt PF01264.21 gi|386001100|ref|YP_005919399.1| - 6.8e-144 478.6 0.1 7.7e-144 478.4 0.1 1.0 1 0 0 1 1 1 1 Chorismate synthase MoeA_N PF03453.17 gi|386001101|ref|YP_005919400.1| - 1.3e-41 142.0 3.1 1.3e-41 142.0 3.1 1.8 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|386001101|ref|YP_005919400.1| - 2.7e-24 85.5 0.0 6.5e-24 84.2 0.0 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|386001101|ref|YP_005919400.1| - 1e-14 54.1 1.2 2.8e-14 52.7 1.2 1.7 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.15 gi|386001101|ref|YP_005919400.1| - 3.5e-11 43.1 0.1 3.5e-11 43.1 0.1 2.7 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) DNA_primase_lrg PF04104.14 gi|386001103|ref|YP_005919402.1| - 2e-33 115.9 0.0 7.8e-33 114.0 0.0 1.7 1 1 1 2 2 2 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_N PF00705.18 gi|386001104|ref|YP_005919403.1| - 2.3e-14 53.2 0.1 7.6e-14 51.5 0.1 1.8 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|386001104|ref|YP_005919403.1| - 2e-11 44.1 0.0 1.8e-07 31.4 0.0 3.7 2 2 1 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|386001104|ref|YP_005919403.1| - 0.00084 18.9 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Rad9 DNA_pol3_beta PF00712.19 gi|386001104|ref|YP_005919403.1| - 0.018 15.2 0.2 0.21 11.8 0.1 2.5 2 1 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain TFIIS_C PF01096.18 gi|386001105|ref|YP_005919404.1| - 7.4e-18 64.1 8.4 1.7e-17 63.0 4.7 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|386001105|ref|YP_005919404.1| - 4.5e-05 23.3 3.1 0.0012 18.8 0.9 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|386001105|ref|YP_005919404.1| - 0.00031 20.4 1.6 2.6 7.9 0.0 3.1 3 0 0 3 3 3 1 Predicted integral membrane zinc-ribbon metal-binding protein Zn-ribbon_8 PF09723.10 gi|386001105|ref|YP_005919404.1| - 0.0008 19.5 3.0 0.91 9.7 0.0 3.2 3 0 0 3 3 3 1 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|386001105|ref|YP_005919404.1| - 0.0018 18.2 3.5 0.28 11.2 0.6 2.7 2 1 0 2 2 2 1 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|386001105|ref|YP_005919404.1| - 0.0018 17.8 5.5 0.093 12.3 2.1 2.9 2 1 0 2 2 2 1 TFIIB zinc-binding HypA PF01155.19 gi|386001105|ref|YP_005919404.1| - 0.0028 17.7 1.7 0.012 15.6 0.1 2.0 1 1 1 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|386001105|ref|YP_005919404.1| - 0.0055 17.4 0.7 0.049 14.4 0.1 2.0 2 0 0 2 2 2 1 zinc-ribbon family zf-RRN7 PF11781.8 gi|386001105|ref|YP_005919404.1| - 0.011 15.4 2.8 2.2 8.0 0.0 3.1 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DZR PF12773.7 gi|386001105|ref|YP_005919404.1| - 0.012 15.7 3.7 0.084 12.9 3.7 2.1 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|386001105|ref|YP_005919404.1| - 0.012 16.0 1.2 0.29 11.6 1.2 2.2 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|386001105|ref|YP_005919404.1| - 0.023 14.1 6.6 1.1 8.8 0.4 2.8 3 0 0 3 3 3 0 zinc-ribbon domain C1_2 PF03107.16 gi|386001105|ref|YP_005919404.1| - 0.023 15.0 2.7 4.4 7.7 0.1 3.0 3 0 0 3 3 3 0 C1 domain zinc_ribbon_4 PF13717.6 gi|386001105|ref|YP_005919404.1| - 0.026 14.4 6.0 2.4 8.1 0.9 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|386001105|ref|YP_005919404.1| - 0.029 14.1 7.7 2 8.2 0.6 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-ZPR1 PF03367.13 gi|386001105|ref|YP_005919404.1| - 0.037 13.9 0.3 0.14 12.0 0.0 1.9 2 0 0 2 2 2 0 ZPR1 zinc-finger domain DUF3268 PF11672.8 gi|386001105|ref|YP_005919404.1| - 0.04 14.3 1.1 0.99 9.7 0.5 2.0 2 0 0 2 2 2 0 zinc-finger-containing domain PhnA_Zn_Ribbon PF08274.12 gi|386001105|ref|YP_005919404.1| - 0.051 13.5 2.8 0.99 9.4 0.9 2.6 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zf-HIT PF04438.16 gi|386001105|ref|YP_005919404.1| - 0.076 12.9 9.3 0.16 11.8 0.4 3.1 3 0 0 3 3 3 0 HIT zinc finger Elf1 PF05129.13 gi|386001105|ref|YP_005919404.1| - 0.09 12.8 5.1 4.3 7.4 1.9 2.7 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf_UBZ PF18439.1 gi|386001105|ref|YP_005919404.1| - 0.098 12.3 8.1 5.3 6.7 0.1 3.1 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|386001105|ref|YP_005919404.1| - 0.12 12.3 8.5 0.61 10.1 3.1 2.7 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Ogr_Delta PF04606.12 gi|386001105|ref|YP_005919404.1| - 0.13 12.3 3.7 0.17 11.9 0.4 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DNA_RNApol_7kD PF03604.13 gi|386001105|ref|YP_005919404.1| - 0.13 11.9 10.5 0.49 10.1 0.2 3.1 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF1451 PF07295.11 gi|386001105|ref|YP_005919404.1| - 0.2 11.7 5.1 0.22 11.5 0.0 2.7 2 1 1 3 3 3 0 Zinc-ribbon containing domain Baculo_LEF5_C PF11792.8 gi|386001105|ref|YP_005919404.1| - 0.24 11.1 0.2 0.24 11.1 0.2 2.4 3 0 0 3 3 2 0 Baculoviridae late expression factor 5 C-terminal domain Zn_ribbon_SprT PF17283.2 gi|386001105|ref|YP_005919404.1| - 0.26 11.2 14.3 1.6 8.7 0.9 3.1 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zf-TFIIB PF13453.6 gi|386001105|ref|YP_005919404.1| - 0.27 10.6 5.1 0.37 10.1 2.2 2.4 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-ISL3 PF14690.6 gi|386001105|ref|YP_005919404.1| - 0.35 11.6 5.6 15 6.4 2.4 2.7 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Desulfoferrod_N PF06397.12 gi|386001105|ref|YP_005919404.1| - 0.39 10.4 4.6 1 9.0 0.1 3.0 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain CpXC PF14353.6 gi|386001105|ref|YP_005919404.1| - 0.41 10.7 3.2 2.8 8.0 0.9 2.7 2 1 0 2 2 2 0 CpXC protein zf-C2H2 PF00096.26 gi|386001105|ref|YP_005919404.1| - 0.44 11.1 5.9 14 6.4 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type GFA PF04828.14 gi|386001105|ref|YP_005919404.1| - 0.47 10.8 5.1 1.5 9.2 0.8 2.7 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HalOD2 PF18547.1 gi|386001105|ref|YP_005919404.1| - 0.52 10.3 5.7 6.7 6.7 0.4 3.1 3 0 0 3 3 3 0 Halobacterial output domain 2 Ribosomal_L37ae PF01780.19 gi|386001105|ref|YP_005919404.1| - 0.68 10.1 7.5 9.7 6.4 2.1 2.8 1 1 0 2 2 2 0 Ribosomal L37ae protein family zf-C2H2_4 PF13894.6 gi|386001105|ref|YP_005919404.1| - 0.84 10.6 7.4 41 5.4 0.2 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger zf-C2H2_3 PF13878.6 gi|386001105|ref|YP_005919404.1| - 1.2 9.0 3.5 28 4.6 0.0 2.7 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO zinc-ribbons_6 PF07191.12 gi|386001105|ref|YP_005919404.1| - 1.5 8.9 6.2 30 4.7 6.3 2.5 1 1 0 1 1 1 0 zinc-ribbons Rubredoxin_2 PF18073.1 gi|386001105|ref|YP_005919404.1| - 2.1 8.2 13.9 1.2 8.9 1.1 3.1 3 0 0 3 3 3 0 Rubredoxin metal binding domain YhfH PF14149.6 gi|386001105|ref|YP_005919404.1| - 3.6 7.6 7.7 6 6.9 0.2 3.0 3 0 0 3 3 3 0 YhfH-like protein NOB1_Zn_bind PF08772.11 gi|386001105|ref|YP_005919404.1| - 3.8 7.8 8.7 5.3e+02 0.9 8.9 2.8 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2_6 PF13912.6 gi|386001105|ref|YP_005919404.1| - 3.8 7.6 6.5 15 5.8 0.4 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger Zn_ribbon_recom PF13408.6 gi|386001105|ref|YP_005919404.1| - 4.8 7.8 9.4 8.4 7.0 3.3 2.6 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain RNA_POL_M_15KD PF02150.16 gi|386001105|ref|YP_005919404.1| - 5.9 6.9 10.6 41 4.1 0.1 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit DUF5612 PF18462.1 gi|386001106|ref|YP_005919405.1| - 1.1e-69 232.8 4.4 1.1e-69 232.8 4.4 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|386001106|ref|YP_005919405.1| - 2e-07 30.6 0.2 9.3e-07 28.5 0.0 2.3 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.6 gi|386001106|ref|YP_005919405.1| - 9.9e-05 22.9 0.0 0.0002 21.9 0.0 1.5 1 0 0 1 1 1 1 ACT domain Peripla_BP_1 PF00532.21 gi|386001106|ref|YP_005919405.1| - 0.0076 15.7 0.1 0.011 15.2 0.1 1.4 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family DUF1178 PF06676.11 gi|386001106|ref|YP_005919405.1| - 0.11 12.9 0.1 2.3 8.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1178) Glutaredoxin PF00462.24 gi|386001107|ref|YP_005919406.1| - 1.3e-06 28.5 0.0 1.6e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.14 gi|386001107|ref|YP_005919406.1| - 0.0074 16.7 0.0 0.0081 16.5 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) CBFD_NFYB_HMF PF00808.23 gi|386001109|ref|YP_005919408.1| - 5.3e-18 65.1 0.1 5.9e-18 64.9 0.1 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|386001109|ref|YP_005919408.1| - 1.1e-11 45.2 0.0 1.2e-11 45.0 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.13 gi|386001109|ref|YP_005919408.1| - 1.7e-08 34.4 0.0 2e-08 34.1 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-T_C PF15511.6 gi|386001109|ref|YP_005919408.1| - 1e-07 32.1 0.0 1.2e-07 31.8 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID-31kDa PF02291.15 gi|386001109|ref|YP_005919408.1| - 1.7e-05 24.9 0.0 2.1e-05 24.6 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TAF PF02969.17 gi|386001109|ref|YP_005919408.1| - 2.1e-05 24.6 0.1 2.3e-05 24.5 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|386001109|ref|YP_005919408.1| - 0.00024 21.4 0.0 0.00028 21.2 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein EPSP_synthase PF00275.20 gi|386001109|ref|YP_005919408.1| - 0.01 14.6 0.0 0.012 14.4 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Tail_P2_I PF09684.10 gi|386001109|ref|YP_005919408.1| - 0.035 14.0 0.2 0.048 13.6 0.2 1.2 1 0 0 1 1 1 0 Phage tail protein (Tail_P2_I) TFIID_20kDa PF03847.13 gi|386001109|ref|YP_005919408.1| - 0.047 14.2 0.0 0.056 13.9 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 gi|386001109|ref|YP_005919408.1| - 0.055 13.5 0.0 0.062 13.3 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit AAA_32 PF13654.6 gi|386001109|ref|YP_005919408.1| - 0.11 11.3 0.4 0.12 11.2 0.4 1.2 1 0 0 1 1 1 0 AAA domain GatB_N PF02934.15 gi|386001110|ref|YP_005919409.1| - 1.1e-67 228.3 0.0 1.4e-67 227.9 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|386001110|ref|YP_005919409.1| - 1.1e-16 61.1 0.0 1.8e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|386001110|ref|YP_005919409.1| - 2.5e-13 50.1 0.0 5.8e-13 48.9 0.0 1.6 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|386001110|ref|YP_005919409.1| - 0.0017 18.4 0.1 0.0032 17.5 0.1 1.4 1 0 0 1 1 1 1 Yqey-like protein AAA_16 PF13191.6 gi|386001111|ref|YP_005919410.1| - 2.5e-08 34.5 0.4 3.6e-06 27.5 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|386001111|ref|YP_005919410.1| - 1.1e-07 32.2 0.0 2.2e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|386001111|ref|YP_005919410.1| - 1.4e-05 25.0 0.0 4.7e-05 23.3 0.0 2.0 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|386001111|ref|YP_005919410.1| - 1.9e-05 25.1 0.0 4.3e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|386001111|ref|YP_005919410.1| - 0.00034 20.2 0.0 0.0045 16.5 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_11 PF13086.6 gi|386001111|ref|YP_005919410.1| - 0.001 18.9 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|386001111|ref|YP_005919410.1| - 0.0018 18.0 0.0 0.077 12.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|386001111|ref|YP_005919410.1| - 0.011 16.2 0.1 0.39 11.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|386001111|ref|YP_005919410.1| - 0.021 14.0 0.0 0.031 13.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|386001111|ref|YP_005919410.1| - 0.022 14.0 0.0 0.4 9.9 0.0 2.4 1 1 0 2 2 2 0 Zeta toxin NACHT PF05729.12 gi|386001111|ref|YP_005919410.1| - 0.027 14.4 0.0 0.042 13.8 0.0 1.2 1 0 0 1 1 1 0 NACHT domain CbiA PF01656.23 gi|386001111|ref|YP_005919410.1| - 0.029 14.4 0.0 0.064 13.3 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_35 PF14516.6 gi|386001111|ref|YP_005919410.1| - 0.045 12.6 0.0 0.1 11.4 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain AAA_24 PF13479.6 gi|386001111|ref|YP_005919410.1| - 0.048 13.4 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain TIP49_C PF17856.1 gi|386001111|ref|YP_005919410.1| - 0.056 13.6 0.1 0.22 11.7 0.0 1.9 2 0 0 2 2 2 0 TIP49 AAA-lid domain RecA PF00154.21 gi|386001111|ref|YP_005919410.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein DUF2075 PF09848.9 gi|386001111|ref|YP_005919410.1| - 0.15 11.2 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|386001111|ref|YP_005919410.1| - 0.17 12.3 0.0 0.35 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|386001111|ref|YP_005919410.1| - 0.19 12.1 0.0 0.36 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|386001111|ref|YP_005919410.1| - 0.19 11.3 0.0 0.35 10.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PBP_like_2 PF12849.7 gi|386001112|ref|YP_005919411.1| - 6.9e-40 137.5 2.8 2.1e-39 135.9 2.8 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|386001112|ref|YP_005919411.1| - 9.3e-20 70.6 0.1 1.2e-19 70.2 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|386001112|ref|YP_005919411.1| - 2.2e-11 44.0 0.1 3.6e-11 43.3 0.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|386001112|ref|YP_005919411.1| - 0.0036 17.3 0.8 0.016 15.1 0.8 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|386001112|ref|YP_005919411.1| - 0.016 14.6 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein PHP PF02811.19 gi|386001113|ref|YP_005919412.1| - 3e-09 37.4 0.0 5.6e-09 36.5 0.0 1.5 1 1 0 1 1 1 1 PHP domain HTH_24 PF13412.6 gi|386001114|ref|YP_005919413.1| - 0.023 14.2 0.0 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|386001114|ref|YP_005919413.1| - 0.049 13.5 0.0 0.42 10.5 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PBP_like_2 PF12849.7 gi|386001116|ref|YP_005919415.1| - 4.8e-37 128.2 5.0 1.9e-36 126.2 5.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|386001116|ref|YP_005919415.1| - 7.1e-23 80.7 0.3 1e-22 80.2 0.3 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|386001116|ref|YP_005919415.1| - 5e-07 29.7 0.1 2.6e-06 27.3 0.1 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|386001116|ref|YP_005919415.1| - 0.0021 18.1 1.3 0.0053 16.8 1.3 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|386001116|ref|YP_005919415.1| - 0.033 13.5 0.0 0.17 11.2 0.0 2.0 1 1 0 1 1 1 0 LysR substrate binding domain SBP_bac_8 PF13416.6 gi|386001116|ref|YP_005919415.1| - 0.082 12.7 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.7 gi|386001117|ref|YP_005919416.1| - 6.9e-33 114.5 0.2 3.3e-32 112.3 0.2 1.8 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|386001117|ref|YP_005919416.1| - 2.8e-13 49.4 0.1 4.1e-13 48.9 0.1 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|386001117|ref|YP_005919416.1| - 0.00035 20.4 0.0 0.0022 17.8 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PLDc_N PF13396.6 gi|386001117|ref|YP_005919416.1| - 0.00053 19.9 0.3 0.001 19.0 0.3 1.5 1 0 0 1 1 1 1 Phospholipase_D-nuclease N-terminal AsnC_trans_reg PF01037.21 gi|386001118|ref|YP_005919417.1| - 8.5e-09 35.3 0.0 1e-08 35.0 0.0 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Alk_phosphatase PF00245.20 gi|386001119|ref|YP_005919418.1| - 8.6e-98 328.0 0.5 1.5e-90 304.2 0.5 2.1 1 1 1 2 2 2 2 Alkaline phosphatase Metalloenzyme PF01676.18 gi|386001119|ref|YP_005919418.1| - 2.3e-12 46.8 0.0 3.8e-12 46.1 0.0 1.4 1 1 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|386001119|ref|YP_005919418.1| - 0.027 13.9 0.0 0.35 10.2 0.0 2.2 1 1 0 1 1 1 0 Sulfatase Phosphodiest PF01663.22 gi|386001119|ref|YP_005919418.1| - 0.063 12.9 0.1 0.17 11.5 0.0 1.7 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase BPD_transp_1 PF00528.22 gi|386001120|ref|YP_005919419.1| - 3e-28 98.8 8.1 3e-28 98.8 8.1 2.4 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2755 PF10954.8 gi|386001120|ref|YP_005919419.1| - 4.7 7.2 9.4 0.33 10.9 2.9 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2755) BPD_transp_1 PF00528.22 gi|386001121|ref|YP_005919420.1| - 7.4e-30 104.1 10.9 7.4e-30 104.1 10.9 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2755 PF10954.8 gi|386001121|ref|YP_005919420.1| - 1.8 8.6 7.9 0.25 11.3 1.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2755) BPD_transp_1 PF00528.22 gi|386001122|ref|YP_005919421.1| - 3.5e-24 85.5 10.0 3.5e-24 85.5 10.0 3.2 2 2 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component HemY_N PF07219.13 gi|386001122|ref|YP_005919421.1| - 0.24 11.6 0.1 0.24 11.6 0.1 3.4 4 0 0 4 4 4 0 HemY protein N-terminus Carb_kinase PF01256.17 gi|386001123|ref|YP_005919422.1| - 1.9e-46 158.6 0.4 1e-45 156.1 0.2 2.1 2 1 0 2 2 2 1 Carbohydrate kinase YjeF_N PF03853.15 gi|386001123|ref|YP_005919422.1| - 1.8e-41 141.9 1.6 9.8e-41 139.5 0.0 2.3 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|386001123|ref|YP_005919422.1| - 0.00076 18.9 0.1 0.0014 18.1 0.1 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family DUF498 PF04430.14 gi|386001123|ref|YP_005919422.1| - 0.057 13.5 0.0 2.4 8.3 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) MoaC PF01967.21 gi|386001124|ref|YP_005919423.1| - 6.3e-47 159.1 0.6 7.1e-47 158.9 0.6 1.0 1 0 0 1 1 1 1 MoaC family tRNA-synt_1b PF00579.25 gi|386001126|ref|YP_005919425.1| - 5.5e-40 137.5 0.0 8.2e-23 81.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) NETI PF14044.6 gi|386001126|ref|YP_005919425.1| - 0.013 15.2 0.1 0.072 12.8 0.0 2.2 3 0 0 3 3 3 0 NETI protein Pribosyltran PF00156.27 gi|386001127|ref|YP_005919426.1| - 2.7e-21 75.8 0.0 3.7e-21 75.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|386001127|ref|YP_005919426.1| - 0.00044 19.8 0.0 0.00062 19.3 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase TrmB PF01978.19 gi|386001128|ref|YP_005919427.1| - 1.6e-05 24.7 0.2 8.4e-05 22.4 0.2 2.2 1 1 2 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|386001128|ref|YP_005919427.1| - 0.0061 16.7 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|386001128|ref|YP_005919427.1| - 0.021 14.7 0.1 0.05 13.6 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family SMC_ScpB PF04079.16 gi|386001128|ref|YP_005919427.1| - 0.056 13.1 0.1 0.068 12.8 0.1 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB MarR_2 PF12802.7 gi|386001128|ref|YP_005919427.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 MarR family DprA_WH PF17782.1 gi|386001129|ref|YP_005919428.1| - 0.035 14.2 0.1 0.046 13.8 0.1 1.4 1 0 0 1 1 1 0 DprA winged helix domain Methyltransf_23 PF13489.6 gi|386001130|ref|YP_005919429.1| - 0.0025 17.7 0.0 0.0058 16.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386001130|ref|YP_005919429.1| - 0.0075 17.0 0.0 0.015 16.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MutS_V PF00488.21 gi|386001131|ref|YP_005919430.1| - 1.6e-05 25.0 0.0 2.8e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|386001131|ref|YP_005919430.1| - 0.00023 21.7 1.2 0.00055 20.5 0.2 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA PF00004.29 gi|386001131|ref|YP_005919430.1| - 0.02 15.3 0.1 0.087 13.3 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) HTH_15 PF12324.8 gi|386001131|ref|YP_005919430.1| - 0.17 11.9 1.1 0.51 10.3 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain of alkylmercury lyase Doppel PF11466.8 gi|386001132|ref|YP_005919431.1| - 0.044 13.4 0.7 0.072 12.8 0.7 1.3 1 0 0 1 1 1 0 Prion-like protein Doppel DUF4956 PF16316.5 gi|386001132|ref|YP_005919431.1| - 0.067 12.9 0.0 0.074 12.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4956) CreD PF06123.12 gi|386001132|ref|YP_005919431.1| - 0.084 11.6 0.1 0.12 11.2 0.1 1.1 1 0 0 1 1 1 0 Inner membrane protein CreD HTH_23 PF13384.6 gi|386001133|ref|YP_005919432.1| - 4.7e-09 35.8 0.0 9.9e-05 22.0 0.0 2.9 2 1 0 2 2 2 2 Homeodomain-like domain GerE PF00196.19 gi|386001133|ref|YP_005919432.1| - 6.8e-08 32.0 0.0 0.002 17.7 0.0 2.7 2 1 0 2 2 2 2 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|386001133|ref|YP_005919432.1| - 6.2e-07 29.0 0.1 0.0075 15.9 0.1 2.6 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_38 PF13936.6 gi|386001133|ref|YP_005919432.1| - 8e-07 28.7 0.0 0.00026 20.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|386001133|ref|YP_005919432.1| - 0.00014 21.9 0.0 0.0019 18.3 0.0 2.5 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|386001133|ref|YP_005919432.1| - 0.00021 21.3 0.2 0.0037 17.3 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix HTH_Tnp_1 PF01527.20 gi|386001133|ref|YP_005919432.1| - 0.00032 20.9 0.0 0.016 15.5 0.0 2.6 2 1 0 2 2 2 1 Transposase HTH_29 PF13551.6 gi|386001133|ref|YP_005919432.1| - 0.00067 19.6 0.0 0.014 15.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|386001133|ref|YP_005919432.1| - 0.00091 18.7 0.2 0.11 12.0 0.1 2.9 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_ECF PF07638.11 gi|386001133|ref|YP_005919432.1| - 0.0017 18.3 0.1 0.27 11.1 0.1 2.3 2 0 0 2 2 2 1 ECF sigma factor Terminase_5 PF06056.12 gi|386001133|ref|YP_005919432.1| - 0.0033 17.3 0.0 3.8 7.5 0.0 2.6 2 0 0 2 2 2 2 Putative ATPase subunit of terminase (gpP-like) HTH_7 PF02796.15 gi|386001133|ref|YP_005919432.1| - 0.0068 16.5 0.0 1.1 9.4 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|386001133|ref|YP_005919432.1| - 0.0083 15.7 0.1 0.17 11.5 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding CENP-B_N PF04218.13 gi|386001133|ref|YP_005919432.1| - 0.01 15.4 0.0 0.36 10.5 0.0 2.7 2 1 1 3 3 3 0 CENP-B N-terminal DNA-binding domain Fe_dep_repress PF01325.19 gi|386001133|ref|YP_005919432.1| - 0.016 15.4 2.1 0.15 12.3 0.0 3.2 5 0 0 5 5 4 0 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.6 gi|386001133|ref|YP_005919432.1| - 0.024 15.1 0.1 0.63 10.5 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|386001133|ref|YP_005919432.1| - 0.027 14.2 0.2 0.36 10.7 0.0 2.8 2 1 1 3 3 3 0 HTH DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|386001133|ref|YP_005919432.1| - 0.034 13.5 0.0 3.8 7.0 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 HTH_31 PF13560.6 gi|386001133|ref|YP_005919432.1| - 0.035 14.5 0.1 1.4 9.4 0.0 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain GcrA PF07750.11 gi|386001133|ref|YP_005919432.1| - 0.064 13.7 0.2 0.45 10.9 0.0 2.0 1 1 1 2 2 2 0 GcrA cell cycle regulator MerR_1 PF13411.6 gi|386001133|ref|YP_005919432.1| - 0.092 12.9 0.0 0.38 10.9 0.0 2.0 2 0 0 2 2 2 0 MerR HTH family regulatory protein UbiA PF01040.18 gi|386001134|ref|YP_005919433.1| - 5e-18 65.3 14.7 5.6e-18 65.2 14.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Caps_synth_CapC PF14102.6 gi|386001134|ref|YP_005919433.1| - 0.0065 16.9 0.8 0.0065 16.9 0.8 3.0 2 2 1 3 3 3 1 Capsule biosynthesis CapC DUF1724 PF08350.10 gi|386001135|ref|YP_005919434.1| - 7.5e-19 67.6 0.8 1.4e-18 66.8 0.2 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) TrmB PF01978.19 gi|386001135|ref|YP_005919434.1| - 0.00038 20.3 0.9 0.015 15.2 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|386001135|ref|YP_005919434.1| - 0.00061 19.6 0.4 0.0014 18.4 0.4 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sulfolobus_pRN PF05584.11 gi|386001135|ref|YP_005919434.1| - 0.0024 17.9 0.3 1.1 9.3 0.4 2.6 2 0 0 2 2 2 2 Sulfolobus plasmid regulatory protein HTH_20 PF12840.7 gi|386001135|ref|YP_005919434.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|386001135|ref|YP_005919434.1| - 0.014 15.4 4.8 0.038 14.0 1.1 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix Rio2_N PF09202.11 gi|386001135|ref|YP_005919434.1| - 0.064 13.5 0.4 0.88 9.8 0.1 2.7 3 0 0 3 3 3 0 Rio2, N-terminal HxlR PF01638.17 gi|386001135|ref|YP_005919434.1| - 0.065 13.1 0.6 0.21 11.4 0.4 2.0 1 1 1 2 2 2 0 HxlR-like helix-turn-helix MarR PF01047.22 gi|386001135|ref|YP_005919434.1| - 0.084 12.8 1.5 0.11 12.4 0.6 1.7 2 0 0 2 2 2 0 MarR family Ldh_2 PF02615.14 gi|386001135|ref|YP_005919434.1| - 0.089 11.9 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Malate/L-lactate dehydrogenase SepSecS PF05889.13 gi|386001136|ref|YP_005919435.1| - 6.9e-41 140.2 0.0 9e-41 139.8 0.0 1.1 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_1_2 PF00155.21 gi|386001136|ref|YP_005919435.1| - 6.3e-11 42.1 0.0 9.3e-11 41.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|386001136|ref|YP_005919435.1| - 2.3e-10 40.0 0.0 3.2e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|386001136|ref|YP_005919435.1| - 0.078 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.19 gi|386001136|ref|YP_005919435.1| - 0.13 10.9 0.0 0.19 10.4 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain GDPD PF03009.17 gi|386001137|ref|YP_005919436.1| - 1.7e-37 129.5 0.0 1.5e-26 93.7 0.0 2.2 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family zf-like PF04071.12 gi|386001137|ref|YP_005919436.1| - 7.3e-27 93.1 3.7 1.1e-26 92.5 3.7 1.2 1 0 0 1 1 1 1 Cysteine-rich small domain GDPD_2 PF13653.6 gi|386001137|ref|YP_005919436.1| - 0.00077 19.8 0.7 0.0025 18.2 0.7 1.9 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PSDC PF12588.8 gi|386001138|ref|YP_005919437.1| - 0.043 13.8 0.3 0.39 10.7 0.3 2.2 1 1 0 1 1 1 0 Phophatidylserine decarboxylase AP_endonuc_2 PF01261.24 gi|386001139|ref|YP_005919438.1| - 1.3e-22 80.3 0.0 1.6e-22 80.0 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel NAC PF01849.18 gi|386001141|ref|YP_005919440.1| - 1.2e-18 66.9 1.2 2e-18 66.1 1.2 1.4 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|386001141|ref|YP_005919440.1| - 0.058 13.2 0.0 0.087 12.7 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain DUF2786 PF10979.8 gi|386001141|ref|YP_005919440.1| - 0.29 11.1 1.3 0.72 9.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) Gpr1_Fun34_YaaH PF01184.19 gi|386001142|ref|YP_005919441.1| - 3e-32 111.9 21.5 3.5e-32 111.7 21.5 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Nuc_deoxyrib_tr PF05014.15 gi|386001143|ref|YP_005919442.1| - 0.092 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase TetR_C_10 PF16295.5 gi|386001143|ref|YP_005919442.1| - 0.21 11.9 0.0 0.43 10.9 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Hexapep PF00132.24 gi|386001144|ref|YP_005919443.1| - 4.5e-14 51.5 9.7 0.00012 21.7 0.4 4.6 2 2 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|386001144|ref|YP_005919443.1| - 1.3e-12 47.2 8.0 0.00049 19.8 0.0 4.8 3 2 1 4 4 4 4 Hexapeptide repeat of succinyl-transferase DUF1952 PF09189.10 gi|386001144|ref|YP_005919443.1| - 0.12 12.2 0.2 0.67 9.8 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1952) MFS_1 PF07690.16 gi|386001145|ref|YP_005919444.1| - 7.2e-22 77.8 59.3 1.7e-10 40.4 32.5 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Nodulin-like PF06813.13 gi|386001145|ref|YP_005919444.1| - 0.0067 15.9 10.0 0.0067 15.9 10.0 2.9 2 2 0 2 2 2 2 Nodulin-like FliG_N PF14842.6 gi|386001146|ref|YP_005919445.1| - 0.16 12.5 3.0 0.68 10.5 0.1 2.9 4 0 0 4 4 4 0 FliG N-terminal domain DAPDH_C PF16654.5 gi|386001147|ref|YP_005919446.1| - 1.2e-74 249.3 0.0 1.7e-74 248.8 0.0 1.2 1 0 0 1 1 1 1 Diaminopimelic acid dehydrogenase C-terminal domain F420_oxidored PF03807.17 gi|386001147|ref|YP_005919446.1| - 6.3e-05 23.5 0.0 0.00012 22.6 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent HAD PF12710.7 gi|386001147|ref|YP_005919446.1| - 0.05 14.0 0.0 0.13 12.6 0.0 1.7 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase CoA_binding PF02629.19 gi|386001147|ref|YP_005919446.1| - 0.12 13.1 0.0 0.98 10.1 0.0 2.3 3 0 0 3 3 3 0 CoA binding domain AdoHcyase_NAD PF00670.21 gi|386001147|ref|YP_005919446.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|386001147|ref|YP_005919446.1| - 0.16 12.8 0.0 0.27 12.1 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.12 gi|386001147|ref|YP_005919446.1| - 0.19 11.3 0.0 0.31 10.6 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain CxxCxxCC PF03692.15 gi|386001148|ref|YP_005919447.1| - 4.4e-11 43.3 4.4 4.4e-11 43.3 4.4 1.9 2 0 0 2 2 2 1 Putative zinc- or iron-chelating domain Hydrolase_3 PF08282.12 gi|386001149|ref|YP_005919448.1| - 1.1e-24 87.6 0.0 1.4e-15 57.7 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|386001149|ref|YP_005919448.1| - 9.9e-09 35.8 3.1 4.6e-05 23.8 0.1 2.9 1 1 2 3 3 3 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|386001149|ref|YP_005919448.1| - 4.3e-06 26.0 0.0 0.003 16.7 0.0 2.1 2 0 0 2 2 2 2 Trehalose-phosphatase HAD PF12710.7 gi|386001149|ref|YP_005919448.1| - 9.2e-06 26.2 6.1 0.01 16.3 0.0 3.1 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|386001149|ref|YP_005919448.1| - 0.00023 20.8 0.0 0.00047 19.8 0.0 1.5 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD_2 PF13419.6 gi|386001149|ref|YP_005919448.1| - 0.00055 20.1 0.1 0.0053 16.9 0.0 2.0 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Rad51 PF08423.11 gi|386001150|ref|YP_005919449.1| - 3.6e-82 275.5 0.0 4.5e-82 275.1 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|386001150|ref|YP_005919449.1| - 1.6e-13 51.0 0.4 4.8e-13 49.5 0.4 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|386001150|ref|YP_005919449.1| - 1.7e-13 50.7 0.2 4.5e-06 26.3 0.1 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.23 gi|386001150|ref|YP_005919449.1| - 9e-09 34.8 0.6 0.00084 19.1 0.1 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix motif ATPase PF06745.13 gi|386001150|ref|YP_005919449.1| - 3e-07 30.0 0.2 8.5e-07 28.5 0.2 1.7 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|386001150|ref|YP_005919449.1| - 4.5e-06 26.4 0.0 6.8e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain HHH_2 PF12826.7 gi|386001150|ref|YP_005919449.1| - 1.3e-05 25.2 0.2 3e-05 24.0 0.2 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|386001150|ref|YP_005919449.1| - 0.00016 21.4 0.0 0.0022 17.8 0.0 2.4 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|386001150|ref|YP_005919449.1| - 0.00081 19.6 0.0 0.0015 18.7 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus CobU PF02283.16 gi|386001150|ref|YP_005919449.1| - 0.001 18.6 0.1 0.014 14.9 0.0 2.1 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA PF00004.29 gi|386001150|ref|YP_005919449.1| - 0.0017 18.8 0.0 0.0063 16.9 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF4332 PF14229.6 gi|386001150|ref|YP_005919449.1| - 0.014 15.7 0.4 0.032 14.5 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) ATPase_2 PF01637.18 gi|386001150|ref|YP_005919449.1| - 0.014 15.3 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea HhH-GPD PF00730.25 gi|386001150|ref|YP_005919449.1| - 0.018 15.5 0.0 0.032 14.7 0.0 1.5 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein AAA_22 PF13401.6 gi|386001150|ref|YP_005919449.1| - 0.021 15.1 0.0 0.052 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|386001150|ref|YP_005919449.1| - 0.038 13.7 0.0 0.084 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain HHH_8 PF14716.6 gi|386001150|ref|YP_005919449.1| - 0.038 14.3 0.1 6 7.3 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|386001150|ref|YP_005919449.1| - 0.079 13.2 0.1 21 5.5 0.0 2.5 1 1 1 2 2 2 0 Helix-hairpin-helix motif AAA_18 PF13238.6 gi|386001150|ref|YP_005919449.1| - 0.14 12.7 0.1 2.7 8.5 0.0 3.1 2 1 0 2 2 2 0 AAA domain tRNA_anti-codon PF01336.25 gi|386001151|ref|YP_005919450.1| - 3.5e-24 84.6 8.9 2e-08 34.1 0.3 4.4 4 1 1 5 5 5 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|386001151|ref|YP_005919450.1| - 6.7e-09 35.8 0.0 0.0027 17.5 0.0 3.2 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 REPA_OB_2 PF16900.5 gi|386001151|ref|YP_005919450.1| - 5.4e-07 29.4 0.1 0.99 9.4 0.0 3.3 3 0 0 3 3 3 3 Replication protein A OB domain MlaD PF02470.20 gi|386001151|ref|YP_005919450.1| - 0.017 15.4 2.5 9.5 6.6 0.1 3.5 3 0 0 3 3 3 0 MlaD protein PRC PF05239.16 gi|386001151|ref|YP_005919450.1| - 0.28 11.3 2.9 5.1 7.3 0.1 3.5 3 0 0 3 3 3 0 PRC-barrel domain ABC_tran PF00005.27 gi|386001152|ref|YP_005919451.1| - 1.2e-58 197.5 0.0 4.2e-28 98.6 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|386001152|ref|YP_005919451.1| - 4.5e-12 46.4 2.9 0.009 15.9 0.0 4.2 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|386001152|ref|YP_005919451.1| - 9.7e-08 32.1 1.6 0.012 15.5 0.0 2.6 3 0 0 3 3 2 2 RsgA GTPase SMC_N PF02463.19 gi|386001152|ref|YP_005919451.1| - 1.3e-06 28.0 2.7 0.0069 15.8 0.0 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|386001152|ref|YP_005919451.1| - 3.3e-06 26.7 1.9 0.033 13.9 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|386001152|ref|YP_005919451.1| - 0.00016 21.5 0.7 0.38 10.5 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|386001152|ref|YP_005919451.1| - 0.00031 21.2 0.7 0.81 10.1 0.0 2.8 3 0 0 3 3 3 2 AAA ATPase domain SbcCD_C PF13558.6 gi|386001152|ref|YP_005919451.1| - 0.00049 20.3 1.0 0.21 11.9 0.0 4.2 3 2 0 3 3 2 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|386001152|ref|YP_005919451.1| - 0.00083 19.9 2.3 0.6 10.6 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|386001152|ref|YP_005919451.1| - 0.00094 19.5 1.4 2.6 8.3 0.0 3.4 3 0 0 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|386001152|ref|YP_005919451.1| - 0.0016 18.2 0.1 0.23 11.1 0.0 3.0 3 0 0 3 3 3 1 IstB-like ATP binding protein TniB PF05621.11 gi|386001152|ref|YP_005919451.1| - 0.0017 17.8 1.7 0.7 9.3 0.0 3.6 4 0 0 4 4 4 1 Bacterial TniB protein AAA_28 PF13521.6 gi|386001152|ref|YP_005919451.1| - 0.004 17.4 0.0 2.9 8.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|386001152|ref|YP_005919451.1| - 0.0047 16.9 0.1 0.6 10.0 0.0 2.4 2 0 0 2 2 2 1 Rad17 P-loop domain ATPase PF06745.13 gi|386001152|ref|YP_005919451.1| - 0.0049 16.2 3.9 0.084 12.2 0.4 3.1 3 0 0 3 3 3 1 KaiC NB-ARC PF00931.22 gi|386001152|ref|YP_005919451.1| - 0.01 15.0 0.9 0.96 8.6 0.2 2.4 2 0 0 2 2 2 0 NB-ARC domain AAA_15 PF13175.6 gi|386001152|ref|YP_005919451.1| - 0.02 14.6 0.8 1.2 8.8 0.0 2.6 3 0 0 3 3 3 0 AAA ATPase domain NACHT PF05729.12 gi|386001152|ref|YP_005919451.1| - 0.056 13.4 2.5 3.6 7.5 0.0 2.7 2 0 0 2 2 2 0 NACHT domain MobB PF03205.14 gi|386001152|ref|YP_005919451.1| - 0.063 13.2 1.6 6.2 6.7 0.1 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|386001152|ref|YP_005919451.1| - 0.075 13.6 3.0 4.8 7.7 0.0 3.5 3 1 0 3 3 3 0 AAA domain ABC_ATPase PF09818.9 gi|386001152|ref|YP_005919451.1| - 0.079 11.7 2.5 5.3 5.7 0.3 3.0 3 0 0 3 3 3 0 Predicted ATPase of the ABC class PhoH PF02562.16 gi|386001152|ref|YP_005919451.1| - 0.091 12.2 0.1 14 5.0 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 gi|386001152|ref|YP_005919451.1| - 0.093 12.3 7.2 8.2 6.0 0.2 4.6 4 1 1 5 5 5 0 AAA domain AAA PF00004.29 gi|386001152|ref|YP_005919451.1| - 0.1 13.0 0.2 56 4.2 0.1 3.6 3 1 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.20 gi|386001152|ref|YP_005919451.1| - 0.1 11.7 0.3 9.2 5.3 0.0 2.3 2 0 0 2 2 2 0 G-protein alpha subunit PRK PF00485.18 gi|386001152|ref|YP_005919451.1| - 0.2 11.3 0.4 18 5.0 0.1 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family PduV-EutP PF10662.9 gi|386001152|ref|YP_005919451.1| - 0.22 11.3 1.7 5.9 6.6 0.1 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|386001152|ref|YP_005919451.1| - 0.24 11.6 0.5 22 5.3 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1 PF01926.23 gi|386001152|ref|YP_005919451.1| - 0.25 11.4 1.5 2.4 8.3 0.1 2.7 3 0 0 3 3 2 0 50S ribosome-binding GTPase DLIC PF05783.11 gi|386001152|ref|YP_005919451.1| - 0.28 10.0 1.3 4.3 6.1 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) cobW PF02492.19 gi|386001152|ref|YP_005919451.1| - 1.5 8.4 3.7 7.9 6.0 0.2 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain tRNA-synt_1g PF09334.11 gi|386001153|ref|YP_005919452.1| - 1.6e-148 494.7 0.0 1.9e-148 494.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|386001153|ref|YP_005919452.1| - 7.6e-26 90.1 0.0 1.3e-25 89.3 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|386001153|ref|YP_005919452.1| - 4.2e-16 58.3 0.1 1.7e-07 29.9 0.0 3.8 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|386001153|ref|YP_005919452.1| - 9.1e-13 48.4 0.0 1.5e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|386001153|ref|YP_005919452.1| - 1.3e-08 34.5 0.0 0.00029 20.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|386001153|ref|YP_005919452.1| - 0.0033 16.4 0.0 0.85 8.5 0.0 2.4 3 0 0 3 3 3 2 tRNA synthetases class I (K) DZR PF12773.7 gi|386001153|ref|YP_005919452.1| - 0.44 10.6 5.8 1.5 8.9 5.9 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_7 PF02591.15 gi|386001153|ref|YP_005919452.1| - 4.2 7.6 6.6 1 9.6 0.1 3.2 4 0 0 4 4 4 0 C4-type zinc ribbon domain DUF1724 PF08350.10 gi|386001154|ref|YP_005919453.1| - 9.7e-16 57.7 0.0 2.7e-15 56.2 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) Response_reg PF00072.24 gi|386001154|ref|YP_005919453.1| - 2.2e-12 47.1 0.0 3.4e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain CHASE4 PF05228.13 gi|386001155|ref|YP_005919454.1| - 1.4e-33 116.1 0.0 9.3e-33 113.3 0.0 2.3 2 0 0 2 2 2 1 CHASE4 domain HATPase_c PF02518.26 gi|386001155|ref|YP_005919454.1| - 4.3e-25 88.4 0.0 9.2e-25 87.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|386001155|ref|YP_005919454.1| - 2e-17 63.4 0.1 5.4e-17 62.0 0.0 1.8 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|386001155|ref|YP_005919454.1| - 4.6e-11 42.6 0.4 1.9e-09 37.4 0.0 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|386001155|ref|YP_005919454.1| - 1.9e-09 37.7 0.0 5.8e-09 36.2 0.0 1.9 1 0 0 1 1 1 1 PAS domain GAF PF01590.26 gi|386001155|ref|YP_005919454.1| - 2.1e-09 38.1 0.0 8.3e-09 36.2 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 gi|386001155|ref|YP_005919454.1| - 3.5e-09 36.7 0.0 1e-08 35.1 0.0 1.9 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 gi|386001155|ref|YP_005919454.1| - 3.8e-06 27.2 0.0 2.8e-05 24.4 0.0 2.3 2 0 0 2 2 2 1 GAF domain HAMP PF00672.25 gi|386001155|ref|YP_005919454.1| - 2.7e-05 24.5 0.1 6.9e-05 23.1 0.1 1.8 1 0 0 1 1 1 1 HAMP domain PAS_8 PF13188.7 gi|386001155|ref|YP_005919454.1| - 4.4e-05 23.4 0.0 0.00017 21.5 0.0 2.1 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.6 gi|386001155|ref|YP_005919454.1| - 0.00022 21.1 0.0 0.00045 20.1 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|386001155|ref|YP_005919454.1| - 0.0013 18.6 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|386001155|ref|YP_005919454.1| - 0.0028 18.0 0.0 0.084 13.2 0.0 2.5 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.6 gi|386001155|ref|YP_005919454.1| - 0.0084 16.1 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain dCache_1 PF02743.18 gi|386001155|ref|YP_005919454.1| - 0.014 15.2 0.2 3 7.6 0.0 3.2 2 1 1 3 3 3 0 Cache domain Response_reg PF00072.24 gi|386001156|ref|YP_005919455.1| - 3.2e-20 72.4 0.0 3.8e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Fer4_5 PF12801.7 gi|386001157|ref|YP_005919456.1| - 8.4e-14 51.3 12.2 5.8e-13 48.6 1.9 4.2 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386001157|ref|YP_005919456.1| - 1.8e-11 44.5 4.7 6.2e-06 26.7 0.2 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386001157|ref|YP_005919456.1| - 2e-11 43.8 22.0 1.4e-09 37.9 9.8 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001157|ref|YP_005919456.1| - 7.5e-09 35.6 21.5 5.9e-08 32.7 11.3 2.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386001157|ref|YP_005919456.1| - 7.6e-09 35.0 22.3 0.00014 21.6 2.2 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|386001157|ref|YP_005919456.1| - 1.2e-06 28.5 18.2 0.0084 16.5 1.5 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386001157|ref|YP_005919456.1| - 1.4e-06 28.1 19.6 7.5e-05 22.6 1.4 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|386001157|ref|YP_005919456.1| - 1.5e-06 28.6 12.4 0.0068 16.9 4.8 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386001157|ref|YP_005919456.1| - 1.7e-06 28.9 7.8 0.01 16.8 0.3 3.3 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|386001157|ref|YP_005919456.1| - 2.3e-06 27.8 5.7 2.3e-06 27.8 5.7 2.5 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386001157|ref|YP_005919456.1| - 4.1e-06 26.8 13.1 0.0023 18.0 3.4 3.1 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001157|ref|YP_005919456.1| - 1.6e-05 24.7 11.7 4.3e-05 23.4 1.8 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain MscS_TM PF12794.7 gi|386001157|ref|YP_005919456.1| - 0.00013 21.0 1.6 0.0002 20.3 1.6 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel inner membrane domain 1 Fer4_8 PF13183.6 gi|386001157|ref|YP_005919456.1| - 0.00037 20.9 15.7 0.0048 17.3 12.7 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|386001157|ref|YP_005919456.1| - 0.0019 19.0 12.4 0.0058 17.5 0.8 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386001157|ref|YP_005919456.1| - 0.012 16.3 10.2 0.18 12.6 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|386001157|ref|YP_005919456.1| - 0.039 14.5 16.0 0.08 13.5 0.9 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|386001157|ref|YP_005919456.1| - 0.056 14.4 5.3 0.056 14.4 5.3 3.6 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|386001157|ref|YP_005919456.1| - 0.19 11.5 5.3 0.21 11.4 0.2 2.7 2 1 1 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MIG-14_Wnt-bd PF06664.12 gi|386001157|ref|YP_005919456.1| - 0.19 10.9 8.1 0.034 13.4 4.1 1.6 1 1 1 2 2 2 0 Wnt-binding factor required for Wnt secretion AAA_21 PF13304.6 gi|386001158|ref|YP_005919457.1| - 2.9e-37 129.1 0.0 3.6e-37 128.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|386001158|ref|YP_005919457.1| - 3.6e-19 69.7 0.0 5.1e-11 42.9 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|386001158|ref|YP_005919457.1| - 2.9e-12 46.5 0.0 1.1e-10 41.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|386001158|ref|YP_005919457.1| - 6.3e-06 25.7 0.9 0.045 13.0 0.0 2.4 3 0 0 3 3 3 2 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|386001158|ref|YP_005919457.1| - 3.6e-05 24.4 0.1 4.6e-05 24.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|386001158|ref|YP_005919457.1| - 0.00016 21.3 0.0 0.00037 20.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|386001158|ref|YP_005919457.1| - 0.0016 19.0 0.0 0.0047 17.4 0.0 1.7 2 0 0 2 2 2 1 ABC transporter TruB_C_2 PF16198.5 gi|386001159|ref|YP_005919458.1| - 1.4e-25 89.2 0.2 2.6e-25 88.3 0.2 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain TruB_N PF01509.18 gi|386001159|ref|YP_005919458.1| - 1.4e-23 83.9 0.1 1.9e-14 54.3 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.12 gi|386001159|ref|YP_005919458.1| - 2.3e-20 72.4 0.1 1.5e-18 66.6 0.0 2.3 2 0 0 2 2 2 1 DKCLD (NUC011) domain PUA PF01472.20 gi|386001159|ref|YP_005919458.1| - 2e-18 66.1 1.0 3.4e-18 65.4 1.0 1.4 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.6 gi|386001160|ref|YP_005919459.1| - 2e-21 76.9 1.1 1.7e-12 47.9 0.6 2.0 1 1 1 2 2 2 2 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|386001160|ref|YP_005919459.1| - 2.4e-12 47.0 0.6 5.8e-05 22.9 0.2 2.1 2 0 0 2 2 2 2 Cytidylate kinase AAA_18 PF13238.6 gi|386001160|ref|YP_005919459.1| - 5.2e-12 46.4 0.2 7.4e-12 45.9 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|386001160|ref|YP_005919459.1| - 1.4e-07 32.0 0.3 3.4e-07 30.8 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|386001160|ref|YP_005919459.1| - 1e-06 29.1 0.8 4.1e-06 27.1 0.7 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|386001160|ref|YP_005919459.1| - 0.0011 19.2 0.4 0.0075 16.4 0.4 1.9 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.22 gi|386001160|ref|YP_005919459.1| - 0.0026 17.9 0.4 0.022 14.9 0.0 2.0 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.6 gi|386001160|ref|YP_005919459.1| - 0.0027 17.8 0.2 0.11 12.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|386001160|ref|YP_005919459.1| - 0.16 11.9 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain EMC3_TMCO1 PF01956.16 gi|386001161|ref|YP_005919460.1| - 8.3e-46 155.8 1.5 1.1e-45 155.4 1.5 1.2 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like DUF4199 PF13858.6 gi|386001161|ref|YP_005919460.1| - 5.5e-05 23.6 3.4 0.0004 20.8 3.4 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF4199) Bac_export_2 PF01312.19 gi|386001161|ref|YP_005919460.1| - 0.092 11.9 1.9 0.093 11.9 1.4 1.3 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family SecY PF00344.20 gi|386001162|ref|YP_005919461.1| - 2.8e-65 220.6 21.8 5e-65 219.7 21.8 1.4 1 1 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|386001162|ref|YP_005919461.1| - 1.4e-09 37.7 4.0 4.2e-09 36.1 4.0 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|386001163|ref|YP_005919462.1| - 1.1e-17 65.0 3.7 1.9e-17 64.1 3.7 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 gi|386001164|ref|YP_005919463.1| - 3.3e-19 68.5 0.3 1.2e-18 66.7 0.1 2.0 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.15 gi|386001165|ref|YP_005919464.1| - 9.9e-25 85.8 0.8 1.6e-24 85.1 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|386001165|ref|YP_005919464.1| - 7.6e-24 83.5 2.2 1.5e-23 82.6 0.8 2.1 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L5e PF17144.4 gi|386001166|ref|YP_005919465.1| - 1.3e-32 113.0 0.2 2.4e-21 76.4 0.1 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|386001166|ref|YP_005919465.1| - 0.0003 21.2 0.0 0.00039 20.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|386001167|ref|YP_005919466.1| - 2.7e-55 186.4 7.4 3e-55 186.3 7.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.18 gi|386001168|ref|YP_005919467.1| - 1.3e-33 115.7 0.2 1.7e-33 115.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|386001169|ref|YP_005919468.1| - 1.1e-26 93.3 1.5 9.3e-14 51.9 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF3060 PF11259.8 gi|386001169|ref|YP_005919468.1| - 0.26 11.0 2.3 11 5.8 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3060) Ribosomal_S8 PF00410.19 gi|386001170|ref|YP_005919469.1| - 1.5e-22 79.9 0.0 2.1e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|386001171|ref|YP_005919470.1| - 1.2e-14 53.8 3.2 1.2e-14 53.8 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DZR PF12773.7 gi|386001171|ref|YP_005919470.1| - 0.011 15.7 0.2 0.015 15.3 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-P11 PF03854.14 gi|386001171|ref|YP_005919470.1| - 0.026 14.2 0.3 0.034 13.8 0.3 1.2 1 0 0 1 1 1 0 P-11 zinc finger Ribosomal_L5_C PF00673.21 gi|386001172|ref|YP_005919471.1| - 7.1e-26 90.2 0.0 1.2e-25 89.5 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|386001172|ref|YP_005919471.1| - 1e-14 54.6 0.0 1.6e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|386001173|ref|YP_005919472.1| - 2.9e-22 78.3 0.0 4.8e-22 77.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.25 gi|386001173|ref|YP_005919472.1| - 1.7e-07 30.9 0.4 3.5e-07 29.8 0.4 1.6 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|386001173|ref|YP_005919472.1| - 0.0011 18.9 0.8 0.0027 17.6 0.8 1.8 1 0 0 1 1 1 1 KOW motif DUF515 PF04415.12 gi|386001173|ref|YP_005919472.1| - 0.007 14.8 0.0 0.011 14.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF515) S4_2 PF13275.6 gi|386001173|ref|YP_005919472.1| - 0.043 13.6 0.1 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 S4 domain Ribosomal_L26 PF16906.5 gi|386001174|ref|YP_005919473.1| - 3.4e-28 97.9 0.9 4.2e-28 97.6 0.9 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|386001174|ref|YP_005919473.1| - 1.8e-05 24.5 0.1 3.2e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.19 gi|386001175|ref|YP_005919474.1| - 3.3e-37 127.3 1.1 3.7e-37 127.1 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|386001176|ref|YP_005919475.1| - 8.4e-27 93.1 3.7 1e-26 92.8 3.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|386001176|ref|YP_005919475.1| - 6.8e-07 29.6 0.1 1.4e-06 28.6 0.0 1.6 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|386001177|ref|YP_005919476.1| - 1.3e-24 85.9 0.0 1.5e-24 85.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|386001178|ref|YP_005919477.1| - 8e-21 73.8 0.2 8.9e-21 73.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein DUF3213 PF11491.8 gi|386001178|ref|YP_005919477.1| - 0.014 15.5 0.1 0.025 14.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3213) Radical_SAM PF04055.21 gi|386001178|ref|YP_005919477.1| - 0.058 13.8 0.1 0.065 13.6 0.1 1.1 1 0 0 1 1 1 0 Radical SAM superfamily MRP-L47 PF06984.13 gi|386001178|ref|YP_005919477.1| - 0.059 13.5 0.2 0.1 12.7 0.2 1.6 1 1 0 1 1 1 0 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) DUF1192 PF06698.11 gi|386001178|ref|YP_005919477.1| - 0.78 9.8 5.3 0.79 9.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Ribosomal_S3_C PF00189.20 gi|386001179|ref|YP_005919478.1| - 6e-21 74.8 0.1 1.2e-20 73.8 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|386001179|ref|YP_005919478.1| - 2.9e-14 52.6 0.5 7.1e-14 51.4 0.0 1.8 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|386001179|ref|YP_005919478.1| - 0.029 14.2 0.5 0.35 10.7 0.1 2.5 3 0 0 3 3 3 0 KH domain PUFD PF16553.5 gi|386001179|ref|YP_005919478.1| - 0.078 13.1 0.1 0.27 11.3 0.0 1.8 2 0 0 2 2 2 0 BCORL-PCGF1-binding domain KH_4 PF13083.6 gi|386001179|ref|YP_005919478.1| - 0.16 11.9 2.4 0.22 11.4 0.2 2.2 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.19 gi|386001180|ref|YP_005919479.1| - 1.9e-28 98.7 0.1 2.3e-28 98.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|386001181|ref|YP_005919480.1| - 7.8e-29 99.4 0.2 1.1e-28 98.9 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.18 gi|386001182|ref|YP_005919481.1| - 1.4e-45 154.5 0.8 2.1e-45 154.0 0.8 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|386001182|ref|YP_005919481.1| - 7.4e-14 51.5 0.1 2.4e-13 49.9 0.1 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|386001183|ref|YP_005919482.1| - 2.6e-10 40.5 0.4 5.8e-10 39.4 0.4 1.5 1 1 0 1 1 1 1 Ribosomal protein L23 Ribosomal_S24e PF01282.19 gi|386001183|ref|YP_005919482.1| - 0.037 14.0 0.1 0.049 13.6 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein S24e Ribosomal_L4 PF00573.22 gi|386001184|ref|YP_005919483.1| - 7.4e-48 162.8 0.1 8.4e-48 162.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|386001185|ref|YP_005919484.1| - 2.1e-81 273.7 0.0 1.1e-80 271.4 0.0 1.8 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|386001186|ref|YP_005919485.1| - 3.8e-55 187.4 0.0 4.8e-55 187.1 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|386001186|ref|YP_005919485.1| - 0.15 12.3 0.0 0.52 10.5 0.0 1.8 2 0 0 2 2 2 0 SpoU rRNA Methylase family TIR_2 PF13676.6 gi|386001187|ref|YP_005919486.1| - 2.1e-11 44.5 0.0 2.9e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 TIR domain TIR-like PF10137.9 gi|386001187|ref|YP_005919486.1| - 0.005 16.8 0.0 0.0073 16.3 0.0 1.3 1 0 0 1 1 1 1 Predicted nucleotide-binding protein containing TIR-like domain Nuc_deoxyrib_tr PF05014.15 gi|386001187|ref|YP_005919486.1| - 0.017 15.2 0.0 0.024 14.7 0.0 1.4 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase zf-ribbon_3 PF13248.6 gi|386001187|ref|YP_005919486.1| - 0.07 12.6 0.6 8.4 6.0 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Acetyltransf_1 PF00583.25 gi|386001188|ref|YP_005919487.1| - 1.5e-14 54.2 0.0 2e-14 53.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|386001188|ref|YP_005919487.1| - 4.2e-14 53.0 0.0 4.7e-14 52.8 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|386001188|ref|YP_005919487.1| - 3.6e-09 37.4 0.0 5e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|386001188|ref|YP_005919487.1| - 7.2e-08 32.7 0.0 1.6e-07 31.6 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|386001188|ref|YP_005919487.1| - 5.4e-07 29.5 0.0 8.9e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|386001188|ref|YP_005919487.1| - 7.6e-06 25.9 0.0 9.5e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|386001188|ref|YP_005919487.1| - 0.00018 21.2 0.0 0.00023 20.8 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_CG PF14542.6 gi|386001188|ref|YP_005919487.1| - 0.014 15.5 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|386001188|ref|YP_005919487.1| - 0.081 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TRAM PF01938.20 gi|386001189|ref|YP_005919488.1| - 6.5e-12 45.3 0.7 7.5e-12 45.1 0.7 1.1 1 0 0 1 1 1 1 TRAM domain DUF982 PF06169.12 gi|386001190|ref|YP_005919489.1| - 0.17 11.9 0.1 0.27 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF982) 4HBT PF03061.22 gi|386001191|ref|YP_005919490.1| - 2.9e-13 50.0 0.1 4.1e-13 49.5 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|386001191|ref|YP_005919490.1| - 2e-06 27.9 0.1 2.6e-06 27.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|386001191|ref|YP_005919490.1| - 3.3e-05 24.3 0.0 5.2e-05 23.6 0.0 1.3 1 1 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.6 gi|386001191|ref|YP_005919490.1| - 0.093 11.9 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Polyketide synthase dehydratase Acetyltransf_1 PF00583.25 gi|386001192|ref|YP_005919491.1| - 4e-13 49.6 0.1 5.3e-13 49.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|386001192|ref|YP_005919491.1| - 1e-09 38.7 0.0 1.7e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|386001192|ref|YP_005919491.1| - 7.3e-08 32.4 0.0 8.6e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|386001192|ref|YP_005919491.1| - 3.8e-07 30.0 0.0 5.8e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|386001192|ref|YP_005919491.1| - 0.0028 17.7 0.0 0.0098 16.0 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|386001192|ref|YP_005919491.1| - 0.055 13.6 0.2 0.38 10.9 0.2 2.1 1 1 1 2 2 2 0 GCN5-related N-acetyl-transferase HTH_20 PF12840.7 gi|386001193|ref|YP_005919492.1| - 5.9e-06 26.2 0.4 8.6e-06 25.7 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|386001193|ref|YP_005919492.1| - 0.0031 17.2 0.2 0.036 13.9 0.1 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_5 PF01022.20 gi|386001193|ref|YP_005919492.1| - 0.0055 16.5 0.0 0.0072 16.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|386001193|ref|YP_005919492.1| - 0.036 13.6 0.0 0.075 12.6 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|386001193|ref|YP_005919492.1| - 0.037 13.7 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_45 PF14947.6 gi|386001193|ref|YP_005919492.1| - 0.16 12.0 0.0 0.22 11.6 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix CDP-OH_P_transf PF01066.21 gi|386001194|ref|YP_005919493.1| - 3.8e-07 30.8 1.5 3.8e-07 30.8 1.5 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Aminotran_1_2 PF00155.21 gi|386001195|ref|YP_005919494.1| - 6.6e-71 239.4 0.0 7.5e-71 239.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|386001195|ref|YP_005919494.1| - 1.2e-07 31.4 0.0 1.9e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|386001195|ref|YP_005919494.1| - 3.9e-06 26.1 0.0 7.1e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|386001195|ref|YP_005919494.1| - 0.0011 17.6 0.0 0.0019 16.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|386001195|ref|YP_005919494.1| - 0.031 13.2 0.0 0.082 11.8 0.0 1.6 2 0 0 2 2 2 0 Allinase AsnC_trans_reg PF01037.21 gi|386001196|ref|YP_005919495.1| - 1e-14 54.2 0.1 1.8e-14 53.4 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|386001196|ref|YP_005919495.1| - 2.2e-08 33.5 0.0 4.4e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|386001196|ref|YP_005919495.1| - 0.00036 20.5 0.0 0.00063 19.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|386001196|ref|YP_005919495.1| - 0.0004 20.2 0.1 0.0011 18.8 0.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|386001196|ref|YP_005919495.1| - 0.0081 16.0 0.1 0.021 14.7 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB RNase_3_N PF18497.1 gi|386001196|ref|YP_005919495.1| - 0.034 14.4 0.0 0.059 13.6 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease III N-terminal domain HTH_IclR PF09339.10 gi|386001196|ref|YP_005919495.1| - 0.057 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|386001196|ref|YP_005919495.1| - 0.067 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 gi|386001196|ref|YP_005919495.1| - 0.076 12.9 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 MarR family Phage_rep_org_N PF09681.10 gi|386001196|ref|YP_005919495.1| - 0.12 12.3 0.0 0.33 10.9 0.0 1.7 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF4423 PF14394.6 gi|386001196|ref|YP_005919495.1| - 0.15 11.7 0.0 0.41 10.3 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) HTH_5 PF01022.20 gi|386001196|ref|YP_005919495.1| - 0.16 11.8 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family ATP_bind_3 PF01171.20 gi|386001198|ref|YP_005919497.1| - 5e-11 42.7 0.0 1.8e-10 40.9 0.0 1.8 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|386001198|ref|YP_005919497.1| - 9.3e-07 27.9 0.0 1.2e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase zn-ribbon_14 PF16503.5 gi|386001198|ref|YP_005919497.1| - 1.5e-05 24.4 0.5 1.5e-05 24.4 0.5 2.8 4 0 0 4 4 4 1 Zinc-ribbon Asn_synthase PF00733.21 gi|386001198|ref|YP_005919497.1| - 0.076 12.7 0.2 0.17 11.5 0.2 1.5 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.19 gi|386001198|ref|YP_005919497.1| - 0.16 12.0 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Lar_restr_allev PF14354.6 gi|386001198|ref|YP_005919497.1| - 0.59 10.6 3.0 36 4.8 0.1 3.2 3 0 0 3 3 3 0 Restriction alleviation protein Lar eRF1_1 PF03463.15 gi|386001199|ref|YP_005919498.1| - 1.9e-25 89.4 0.0 2.6e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|386001199|ref|YP_005919498.1| - 7.3e-20 71.6 0.0 3.6e-19 69.3 0.0 2.2 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|386001199|ref|YP_005919498.1| - 6.7e-06 26.4 0.0 1.4e-05 25.4 0.0 1.6 1 1 0 1 1 1 1 eRF1 domain 2 DinI PF06183.13 gi|386001199|ref|YP_005919498.1| - 0.1 13.0 0.0 0.28 11.5 0.0 1.7 1 0 0 1 1 1 0 DinI-like family Topoisom_bac PF01131.20 gi|386001200|ref|YP_005919499.1| - 8.6e-118 393.9 0.0 1.1e-117 393.6 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|386001200|ref|YP_005919499.1| - 5.3e-15 55.5 0.0 2.3e-14 53.5 0.1 2.1 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|386001200|ref|YP_005919499.1| - 5.9e-13 48.4 3.1 1.7e-12 46.9 0.3 2.3 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.6 gi|386001200|ref|YP_005919499.1| - 1.2e-08 35.5 3.1 2.8e-08 34.2 2.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|386001200|ref|YP_005919499.1| - 0.0058 16.9 0.1 0.013 15.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) HHH PF00633.23 gi|386001200|ref|YP_005919499.1| - 0.0088 15.9 0.2 0.027 14.3 0.2 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|386001200|ref|YP_005919499.1| - 0.0098 16.1 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.8 gi|386001200|ref|YP_005919499.1| - 0.046 14.1 0.8 0.1 13.0 0.1 2.0 2 0 0 2 2 2 0 IMS family HHH motif MCR_beta PF02241.18 gi|386001201|ref|YP_005919500.1| - 1.3e-139 463.9 8.0 2e-139 463.3 8.0 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|386001201|ref|YP_005919500.1| - 2.1e-82 275.2 1.8 4.6e-82 274.1 1.8 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.14 gi|386001202|ref|YP_005919501.1| - 1.6e-53 180.4 0.0 1.8e-53 180.2 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_gamma PF02240.16 gi|386001203|ref|YP_005919502.1| - 2.2e-106 354.7 0.0 2.4e-106 354.5 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.15 gi|386001204|ref|YP_005919503.1| - 2.6e-147 489.4 0.1 9.2e-147 487.6 0.2 1.7 2 0 0 2 2 2 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|386001204|ref|YP_005919503.1| - 8e-66 220.3 3.3 1.7e-65 219.2 3.3 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_beta_N PF02783.15 gi|386001204|ref|YP_005919503.1| - 0.077 12.6 0.1 0.69 9.5 0.0 2.4 2 1 0 2 2 2 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF1863 PF08937.11 gi|386001205|ref|YP_005919504.1| - 2.4e-10 40.8 0.0 3e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) TIR_2 PF13676.6 gi|386001205|ref|YP_005919504.1| - 0.0038 17.8 0.1 0.0055 17.3 0.1 1.5 1 1 0 1 1 1 1 TIR domain ORF45 PF17620.2 gi|386001205|ref|YP_005919504.1| - 0.04 14.0 0.1 0.048 13.8 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function QueC PF06508.13 gi|386001206|ref|YP_005919505.1| - 1.1e-26 93.7 0.0 2.3e-26 92.6 0.0 1.4 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|386001206|ref|YP_005919505.1| - 0.011 15.8 0.0 3.4 7.7 0.0 2.3 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|386001206|ref|YP_005919505.1| - 0.026 14.3 0.0 6.7 6.4 0.0 2.3 2 0 0 2 2 2 0 PP-loop family ThiI PF02568.14 gi|386001206|ref|YP_005919505.1| - 0.059 12.9 0.0 0.83 9.2 0.0 2.4 2 1 0 3 3 3 0 Thiamine biosynthesis protein (ThiI) LMWPc PF01451.21 gi|386001207|ref|YP_005919506.1| - 2.9e-13 50.4 0.0 3.3e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Radical_SAM PF04055.21 gi|386001208|ref|YP_005919507.1| - 4e-28 98.9 0.0 8.7e-28 97.8 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|386001208|ref|YP_005919507.1| - 5.5e-07 29.6 1.5 8.4e-05 22.6 0.8 3.4 3 1 0 3 3 3 1 B12 binding domain Radical_SAM PF04055.21 gi|386001209|ref|YP_005919508.1| - 7e-15 55.8 3.9 2.5e-13 50.7 2.2 3.2 1 1 1 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|386001210|ref|YP_005919509.1| - 7.4e-14 52.5 0.0 3.8e-13 50.2 0.0 2.2 2 1 1 3 3 3 1 Radical SAM superfamily SPASM PF13186.6 gi|386001210|ref|YP_005919509.1| - 7.1e-06 26.5 0.4 1.9e-05 25.1 0.4 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|386001210|ref|YP_005919509.1| - 0.0013 19.0 0.0 0.008 16.4 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|386001210|ref|YP_005919509.1| - 0.0071 16.5 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Na_Ca_ex PF01699.24 gi|386001211|ref|YP_005919510.1| - 1.3e-50 171.3 40.1 1.7e-26 93.0 13.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein IF-2 PF11987.8 gi|386001211|ref|YP_005919510.1| - 0.22 11.7 0.4 1 9.5 0.1 2.0 2 0 0 2 2 2 0 Translation-initiation factor 2 DUF2061 PF09834.9 gi|386001211|ref|YP_005919510.1| - 5.4 7.6 8.1 2.4 8.7 2.6 3.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2061) SMC_N PF02463.19 gi|386001212|ref|YP_005919511.1| - 1.8e-71 240.1 0.1 2.2e-71 239.8 0.1 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|386001212|ref|YP_005919511.1| - 3e-28 98.5 0.0 9.1e-28 96.9 0.0 1.9 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|386001212|ref|YP_005919511.1| - 3.1e-10 40.9 13.3 3.1e-10 40.9 13.3 4.9 2 2 1 3 3 2 1 AAA domain AAA_15 PF13175.6 gi|386001212|ref|YP_005919511.1| - 1.6e-09 38.0 0.0 4e-09 36.6 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|386001212|ref|YP_005919511.1| - 1.9e-09 37.8 8.2 2.4e-05 24.3 0.0 3.4 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|386001212|ref|YP_005919511.1| - 8.9e-08 31.8 0.0 1.7e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Flagellin_N PF00669.20 gi|386001212|ref|YP_005919511.1| - 0.037 14.1 1.1 3.1 7.9 0.1 3.3 3 0 0 3 3 3 0 Bacterial flagellin N-terminal helical region AAA_22 PF13401.6 gi|386001212|ref|YP_005919511.1| - 0.053 13.8 0.3 1.5 9.1 0.0 3.1 2 1 0 2 2 2 0 AAA domain Levi_coat PF01819.17 gi|386001212|ref|YP_005919511.1| - 0.053 13.5 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 Levivirus coat protein ABC_tran PF00005.27 gi|386001212|ref|YP_005919511.1| - 0.12 12.9 7.3 0.95 10.0 0.0 4.7 4 2 0 4 4 4 0 ABC transporter BLOC1_2 PF10046.9 gi|386001212|ref|YP_005919511.1| - 1.6 9.1 14.4 9.2 6.6 0.3 6.0 5 2 1 6 6 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Snapin_Pallidin PF14712.6 gi|386001212|ref|YP_005919511.1| - 1.8 9.1 24.5 4.2 7.8 0.2 6.9 6 2 0 7 7 7 0 Snapin/Pallidin SMC_ScpA PF02616.14 gi|386001213|ref|YP_005919512.1| - 1.3e-12 48.1 0.0 1.2e-10 41.7 0.0 2.5 1 1 0 1 1 1 1 Segregation and condensation protein ScpA SMC_ScpB PF04079.16 gi|386001214|ref|YP_005919513.1| - 1.4e-35 122.3 0.0 3.2e-35 121.1 0.0 1.6 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_20 PF12840.7 gi|386001214|ref|YP_005919513.1| - 0.00045 20.2 1.7 0.43 10.7 0.2 3.0 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.19 gi|386001214|ref|YP_005919513.1| - 0.15 12.0 0.2 5.7 6.9 0.1 2.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|386001214|ref|YP_005919513.1| - 0.49 10.2 0.1 0.49 10.2 0.1 3.1 4 0 0 4 4 4 0 IclR helix-turn-helix domain HD PF01966.22 gi|386001215|ref|YP_005919514.1| - 8.4e-09 35.7 0.3 1.3e-08 35.1 0.3 1.3 1 0 0 1 1 1 1 HD domain Glyco_hydro_15 PF00723.21 gi|386001216|ref|YP_005919515.1| - 0.00014 20.8 0.3 0.15 10.8 0.0 3.4 2 1 0 3 3 3 2 Glycosyl hydrolases family 15 DUF608 PF04685.13 gi|386001216|ref|YP_005919515.1| - 0.031 13.4 0.0 0.047 12.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl-hydrolase family 116, catalytic region Ig_3 PF13927.6 gi|386001217|ref|YP_005919516.1| - 1.3e-09 38.5 0.3 4.6e-09 36.8 0.1 2.0 3 0 0 3 3 3 1 Immunoglobulin domain ig PF00047.25 gi|386001217|ref|YP_005919516.1| - 1.2e-07 31.8 0.1 2.6e-07 30.7 0.1 1.6 1 0 0 1 1 1 1 Immunoglobulin domain I-set PF07679.16 gi|386001217|ref|YP_005919516.1| - 3.9e-07 30.0 0.1 2.1e-06 27.7 0.1 2.2 1 1 0 1 1 1 1 Immunoglobulin I-set domain Ig_2 PF13895.6 gi|386001217|ref|YP_005919516.1| - 3.2e-06 27.4 0.2 7e-06 26.3 0.2 1.5 1 0 0 1 1 1 1 Immunoglobulin domain V-set PF07686.17 gi|386001217|ref|YP_005919516.1| - 0.00041 20.5 0.1 0.0059 16.8 0.1 2.5 2 1 0 2 2 2 1 Immunoglobulin V-set domain Peptidase_C25 PF01364.18 gi|386001218|ref|YP_005919517.1| - 1.1e-31 110.4 0.2 1.9e-31 109.6 0.2 1.4 1 0 0 1 1 1 1 Peptidase family C25 DUF11 PF01345.18 gi|386001218|ref|YP_005919517.1| - 0.00083 19.6 0.0 0.0092 16.3 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function DUF11 GHL10 PF02638.15 gi|386001218|ref|YP_005919517.1| - 0.0029 16.7 0.0 0.0059 15.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase-like 10 CW_binding_2 PF04122.12 gi|386001218|ref|YP_005919517.1| - 0.016 15.9 0.2 0.08 13.6 0.2 2.2 1 0 0 1 1 1 0 Putative cell wall binding repeat 2 PucR PF07905.11 gi|386001218|ref|YP_005919517.1| - 0.063 13.5 0.1 17 5.7 0.1 2.5 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family VERL PF11386.8 gi|386001218|ref|YP_005919517.1| - 0.18 12.0 0.8 24 5.2 0.0 3.1 3 0 0 3 3 3 0 Vitelline envelope receptor for lysin NPCBM_assoc PF10633.9 gi|386001219|ref|YP_005919518.1| - 0.00069 19.8 0.2 0.6 10.4 0.0 3.4 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CW_binding_2 PF04122.12 gi|386001219|ref|YP_005919518.1| - 0.0092 16.6 4.1 0.29 11.8 0.1 2.9 3 0 0 3 3 3 2 Putative cell wall binding repeat 2 Inp1 PF12634.7 gi|386001219|ref|YP_005919518.1| - 0.1 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Inheritance of peroxisomes protein 1 N_BRCA1_IG PF16158.5 gi|386001219|ref|YP_005919518.1| - 0.12 13.2 0.0 0.28 11.9 0.0 1.6 1 0 0 1 1 1 0 Ig-like domain from next to BRCA1 gene CtaG_Cox11 PF04442.14 gi|386001219|ref|YP_005919518.1| - 0.14 12.2 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 Cytochrome c oxidase assembly protein CtaG/Cox11 DUF2240 PF09999.9 gi|386001221|ref|YP_005919520.1| - 1.2e-42 145.0 0.1 1.3e-42 144.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) SelB-wing_2 PF09106.11 gi|386001221|ref|YP_005919520.1| - 0.0062 16.7 0.1 0.086 13.1 0.0 2.4 2 0 0 2 2 2 1 Elongation factor SelB, winged helix SIMPL PF04402.14 gi|386001223|ref|YP_005919522.1| - 7.5e-22 78.8 2.6 8.8e-22 78.5 2.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Bactofilin PF04519.13 gi|386001224|ref|YP_005919523.1| - 0.004 17.4 4.9 0.0069 16.7 4.9 1.4 1 0 0 1 1 1 1 Polymer-forming cytoskeletal MTABC_N PF16185.5 gi|386001224|ref|YP_005919523.1| - 0.45 10.0 3.2 0.66 9.4 3.2 1.1 1 0 0 1 1 1 0 Mitochondrial ABC-transporter N-terminal five TM region FapA PF03961.13 gi|386001224|ref|YP_005919523.1| - 1.3 7.5 4.4 1.6 7.3 4.4 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF2070 PF09843.9 gi|386001224|ref|YP_005919523.1| - 2 6.6 12.0 2.7 6.2 12.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2101 PF09874.9 gi|386001224|ref|YP_005919523.1| - 9 5.9 5.9 3.8 7.2 3.0 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2101) Tubulin PF00091.25 gi|386001225|ref|YP_005919524.1| - 6e-42 144.1 0.0 8.8e-42 143.5 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|386001225|ref|YP_005919524.1| - 8.7e-33 112.5 0.8 2.2e-32 111.2 0.8 1.7 1 0 0 1 1 1 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|386001225|ref|YP_005919524.1| - 0.013 15.4 0.7 0.097 12.6 0.1 2.3 2 0 0 2 2 2 0 NAD(P)H-binding ThiF PF00899.21 gi|386001225|ref|YP_005919524.1| - 0.081 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 ThiF family Tubulin_2 PF13809.6 gi|386001225|ref|YP_005919524.1| - 2.1 7.4 8.7 0.53 9.4 2.1 2.3 1 1 0 2 2 2 0 Tubulin like DUF1699 PF08004.11 gi|386001226|ref|YP_005919525.1| - 4.4e-09 36.1 0.0 5.1e-09 35.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF5338 PF17273.2 gi|386001226|ref|YP_005919525.1| - 0.02 14.9 0.0 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5338) HTH_24 PF13412.6 gi|386001227|ref|YP_005919526.1| - 3.2e-06 26.6 0.1 4.9e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|386001227|ref|YP_005919526.1| - 0.0014 18.9 0.1 0.0023 18.2 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|386001227|ref|YP_005919526.1| - 0.0017 18.3 0.0 0.0036 17.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.12 gi|386001227|ref|YP_005919526.1| - 0.0023 18.3 0.0 0.0038 17.6 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_5 PF01022.20 gi|386001227|ref|YP_005919526.1| - 0.0023 17.8 0.2 0.0039 17.0 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|386001227|ref|YP_005919526.1| - 0.003 17.4 0.0 0.0046 16.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|386001227|ref|YP_005919526.1| - 0.0035 17.4 0.1 0.0049 16.9 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.21 gi|386001227|ref|YP_005919526.1| - 0.0039 16.8 0.1 0.006 16.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MerR PF00376.23 gi|386001227|ref|YP_005919526.1| - 0.0098 15.6 0.0 1.3 8.9 0.0 2.3 2 0 0 2 2 2 1 MerR family regulatory protein HTH_12 PF08461.10 gi|386001227|ref|YP_005919526.1| - 0.01 15.8 0.1 0.028 14.3 0.1 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|386001227|ref|YP_005919526.1| - 0.024 14.5 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|386001227|ref|YP_005919526.1| - 0.037 13.8 0.0 0.059 13.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF977 PF06163.11 gi|386001227|ref|YP_005919526.1| - 0.046 13.7 0.1 0.053 13.5 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) RepL PF05732.11 gi|386001227|ref|YP_005919526.1| - 0.11 12.0 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DNA_ligase_A_N PF04675.14 gi|386001228|ref|YP_005919527.1| - 2.7e-23 83.2 0.0 1e-22 81.3 0.0 1.8 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_M PF01068.21 gi|386001228|ref|YP_005919527.1| - 2.6e-17 63.1 0.0 4.3e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain Fasciclin PF02469.22 gi|386001229|ref|YP_005919528.1| - 3.1e-31 108.3 0.0 5.5e-31 107.4 0.0 1.4 1 0 0 1 1 1 1 Fasciclin domain DNA_pol_B_N PF18094.1 gi|386001229|ref|YP_005919528.1| - 3.2 8.4 24.0 6e+02 1.0 0.0 4.8 1 1 1 2 2 2 0 DNA polymerase beta N-terminal domain ParE_toxin PF05016.15 gi|386001230|ref|YP_005919529.1| - 6.8e-07 29.8 0.1 8.9e-07 29.4 0.1 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Toxin_YhaV PF11663.8 gi|386001230|ref|YP_005919529.1| - 0.13 12.3 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Toxin with endonuclease activity, of toxin-antitoxin system VAPB_antitox PF02697.14 gi|386001231|ref|YP_005919530.1| - 0.00037 21.2 0.0 0.00042 21.0 0.0 1.1 1 0 0 1 1 1 1 Putative antitoxin UPF0175 PF03683.13 gi|386001232|ref|YP_005919531.1| - 2.7e-20 71.8 0.5 3.1e-20 71.6 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) PhosphMutase PF10143.9 gi|386001234|ref|YP_005919533.1| - 2.9e-58 196.5 0.0 6.8e-58 195.3 0.0 1.6 2 0 0 2 2 2 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|386001234|ref|YP_005919533.1| - 1e-35 123.3 0.0 1.2e-35 123.1 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|386001234|ref|YP_005919533.1| - 0.081 12.5 0.0 0.26 10.8 0.0 1.8 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase RibD_C PF01872.17 gi|386001235|ref|YP_005919534.1| - 6.5e-24 84.9 0.0 8.9e-24 84.4 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain MCR_C PF04609.12 gi|386001236|ref|YP_005919535.1| - 3.8e-07 29.5 3.9 4.2e-06 26.1 3.9 2.4 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MobC PF05713.11 gi|386001236|ref|YP_005919535.1| - 0.11 12.9 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial mobilisation protein (MobC) DUF5595 PF18077.1 gi|386001236|ref|YP_005919535.1| - 0.32 11.1 2.5 0.67 10.1 2.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5595) TP_methylase PF00590.20 gi|386001237|ref|YP_005919536.1| - 1.1e-16 61.4 0.1 1.3e-16 61.2 0.1 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases PTPS PF01242.19 gi|386001239|ref|YP_005919538.1| - 2.4e-34 117.9 0.0 2.9e-34 117.7 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase QueC PF06508.13 gi|386001240|ref|YP_005919539.1| - 4.9e-53 179.8 0.0 5.5e-53 179.6 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|386001240|ref|YP_005919539.1| - 6e-08 32.5 0.0 5.2e-07 29.4 0.0 2.1 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|386001240|ref|YP_005919539.1| - 0.018 14.7 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.16 gi|386001240|ref|YP_005919539.1| - 0.033 13.0 0.0 0.058 12.2 0.0 1.4 2 0 0 2 2 2 0 tRNA methyl transferase Radical_SAM PF04055.21 gi|386001241|ref|YP_005919540.1| - 9.4e-17 61.9 0.0 1.9e-16 60.9 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|386001241|ref|YP_005919540.1| - 3.4e-09 37.1 0.0 4.9e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|386001241|ref|YP_005919540.1| - 6e-09 36.1 0.0 1.4e-08 34.8 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain HTH_31 PF13560.6 gi|386001241|ref|YP_005919540.1| - 0.04 14.3 0.3 0.51 10.7 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2124 PF09897.9 gi|386001243|ref|YP_005919542.1| - 2.2e-50 170.2 0.0 2.4e-50 170.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) Methyltransf_11 PF08241.12 gi|386001244|ref|YP_005919543.1| - 1.9e-08 34.9 0.0 3.9e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386001244|ref|YP_005919543.1| - 4e-05 24.2 0.0 7.7e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386001244|ref|YP_005919543.1| - 0.01 15.6 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|386001244|ref|YP_005919543.1| - 0.015 14.9 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW STT3 PF02516.14 gi|386001245|ref|YP_005919544.1| - 5.5e-30 104.7 23.0 1.5e-29 103.3 23.0 1.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|386001245|ref|YP_005919544.1| - 1.4e-25 89.4 0.5 4.8e-25 87.7 0.5 2.0 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|386001245|ref|YP_005919544.1| - 0.00025 21.3 11.2 0.00025 21.3 11.2 3.4 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF4203 PF13886.6 gi|386001245|ref|YP_005919544.1| - 0.0036 17.0 9.0 0.0036 17.0 9.0 4.5 3 2 2 5 5 5 1 Domain of unknown function (DUF4203) Big_6 PF17936.1 gi|386001245|ref|YP_005919544.1| - 0.16 12.3 0.1 0.46 10.8 0.1 1.7 1 0 0 1 1 1 0 Bacterial Ig domain TMEM208_SND2 PF05620.11 gi|386001245|ref|YP_005919544.1| - 0.88 9.3 8.0 14 5.4 0.0 3.9 4 0 0 4 4 4 0 SRP-independent targeting protein 2/TMEM208 Creatininase PF02633.14 gi|386001246|ref|YP_005919545.1| - 1.3e-62 211.4 0.1 1.5e-62 211.2 0.1 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase tRNA-synt_2d PF01409.20 gi|386001247|ref|YP_005919546.1| - 2.3e-93 312.2 0.0 3.2e-93 311.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|386001247|ref|YP_005919546.1| - 2.5e-10 40.2 0.0 9.1e-07 28.5 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain GerE PF00196.19 gi|386001247|ref|YP_005919546.1| - 0.00015 21.2 0.0 0.00034 20.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_27 PF13463.6 gi|386001247|ref|YP_005919546.1| - 0.00031 21.2 0.2 1 9.9 0.0 2.4 2 0 0 2 2 2 2 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 gi|386001247|ref|YP_005919546.1| - 0.067 12.9 0.2 0.41 10.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 tRNA-synt_2 PF00152.20 gi|386001247|ref|YP_005919546.1| - 0.079 12.0 0.1 0.2 10.7 0.0 1.6 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|386001247|ref|YP_005919546.1| - 0.13 12.2 0.4 2.3 8.2 0.0 2.6 2 0 0 2 2 2 0 MarR family PheRS_DBD3 PF18553.1 gi|386001247|ref|YP_005919546.1| - 0.2 12.0 1.6 2.6 8.4 0.4 2.8 3 0 0 3 3 3 0 PheRS DNA binding domain 3 Fe_dep_repress PF01325.19 gi|386001247|ref|YP_005919546.1| - 0.22 11.8 0.8 0.6 10.4 0.0 2.1 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain tRNA_synthFbeta PF17759.1 gi|386001248|ref|YP_005919547.1| - 2.7e-34 118.5 0.0 3.6e-34 118.1 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|386001248|ref|YP_005919547.1| - 3.9e-14 52.7 0.0 3.7e-13 49.6 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|386001248|ref|YP_005919547.1| - 9.5e-14 51.4 0.0 1.5e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.20 gi|386001248|ref|YP_005919547.1| - 0.00041 19.9 0.0 0.036 13.5 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) PhetRS_B1 PF18262.1 gi|386001248|ref|YP_005919547.1| - 0.12 12.6 0.0 0.3 11.3 0.0 1.7 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain CBS PF00571.28 gi|386001249|ref|YP_005919548.1| - 4.5e-21 75.0 1.1 2.1e-12 47.3 0.1 2.1 2 0 0 2 2 2 2 CBS domain DUF11 PF01345.18 gi|386001250|ref|YP_005919549.1| - 0.0037 17.5 0.0 0.009 16.3 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|386001250|ref|YP_005919549.1| - 0.031 14.5 0.5 0.031 14.5 0.5 1.8 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase He_PIG PF05345.12 gi|386001250|ref|YP_005919549.1| - 0.099 12.8 0.9 0.43 10.8 0.1 2.5 2 0 0 2 2 2 0 Putative Ig domain RNase_Zc3h12a_2 PF14626.6 gi|386001253|ref|YP_005919552.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain NRD1_2 PF01995.16 gi|386001254|ref|YP_005919553.1| - 2.8e-79 265.8 0.0 3.5e-79 265.5 0.0 1.1 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|386001254|ref|YP_005919553.1| - 3.4e-23 81.4 0.4 7.5e-23 80.3 0.4 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain PEGA PF08308.11 gi|386001255|ref|YP_005919554.1| - 3.8e-11 42.7 0.2 1.2e-10 41.1 0.1 1.8 2 0 0 2 2 2 1 PEGA domain Ribosomal_S6e PF01092.19 gi|386001256|ref|YP_005919555.1| - 2.1e-41 140.8 0.1 2.3e-41 140.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e MgtE PF01769.16 gi|386001257|ref|YP_005919556.1| - 1.4e-35 122.4 36.8 1.4e-20 73.9 6.5 3.9 3 1 1 4 4 4 3 Divalent cation transporter FAD_binding_3 PF01494.19 gi|386001258|ref|YP_005919557.1| - 3.4e-11 43.0 11.4 1.2e-05 24.7 0.6 2.9 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|386001258|ref|YP_005919557.1| - 3.8e-07 29.8 2.3 3.8e-07 29.8 2.3 2.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|386001258|ref|YP_005919557.1| - 8.3e-07 28.0 0.9 1.3e-06 27.4 0.9 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|386001258|ref|YP_005919557.1| - 3.3e-06 26.5 1.2 4.4e-06 26.1 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|386001258|ref|YP_005919557.1| - 3.8e-06 26.2 0.2 7.3e-06 25.3 0.0 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|386001258|ref|YP_005919557.1| - 9.1e-06 25.8 0.4 9.1e-06 25.8 0.4 3.0 3 1 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|386001258|ref|YP_005919557.1| - 4.5e-05 22.5 0.3 0.028 13.3 0.2 2.5 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|386001258|ref|YP_005919557.1| - 8.7e-05 23.0 0.4 0.00022 21.7 0.4 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|386001258|ref|YP_005919557.1| - 0.0001 21.7 2.0 0.0001 21.7 2.0 2.0 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|386001258|ref|YP_005919557.1| - 0.001 18.2 2.2 0.001 18.2 2.2 2.0 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|386001258|ref|YP_005919557.1| - 0.0011 18.2 0.3 0.0011 18.2 0.3 1.9 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|386001258|ref|YP_005919557.1| - 0.0012 17.9 5.8 0.015 14.4 5.7 2.2 1 1 0 1 1 1 1 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|386001258|ref|YP_005919557.1| - 0.0063 16.4 0.2 0.012 15.5 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|386001258|ref|YP_005919557.1| - 0.011 15.3 9.2 0.013 15.1 1.9 2.3 1 1 1 2 2 2 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|386001258|ref|YP_005919557.1| - 0.031 13.6 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|386001258|ref|YP_005919557.1| - 0.045 13.8 0.6 4.7 7.2 0.2 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|386001258|ref|YP_005919557.1| - 0.054 12.7 0.4 0.082 12.1 0.4 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SSF PF00474.17 gi|386001259|ref|YP_005919558.1| - 1.4e-29 103.3 34.5 1.9e-29 102.8 34.5 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Nramp PF01566.18 gi|386001259|ref|YP_005919558.1| - 5.6e-05 22.3 29.2 0.00011 21.3 29.2 1.5 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein ILVD_EDD PF00920.21 gi|386001260|ref|YP_005919559.1| - 5.8e-211 701.6 0.8 6.6e-211 701.4 0.8 1.0 1 0 0 1 1 1 1 Dehydratase family LigT_PEase PF02834.16 gi|386001261|ref|YP_005919560.1| - 1.5e-26 92.4 0.1 1.6e-14 53.8 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|386001261|ref|YP_005919560.1| - 4e-09 36.6 0.0 5.3e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily tRNA_NucTransf2 PF09249.11 gi|386001262|ref|YP_005919561.1| - 8.7e-43 145.2 0.0 1.4e-42 144.5 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|386001262|ref|YP_005919561.1| - 8.4e-14 51.6 0.0 1.6e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.19 gi|386001263|ref|YP_005919562.1| - 3.4e-85 286.2 0.0 4.9e-85 285.7 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain S-layer PF07752.11 gi|386001264|ref|YP_005919563.1| - 3.5e-173 573.6 37.4 3.6e-87 291.7 15.4 2.0 2 0 0 2 2 2 2 S-layer protein PGF-CTERM PF18204.1 gi|386001264|ref|YP_005919563.1| - 2.4e-08 33.7 0.9 4.3e-08 32.9 0.9 1.4 1 0 0 1 1 1 1 PGF-CTERM motif DAGAT PF03982.13 gi|386001264|ref|YP_005919563.1| - 0.0054 15.7 0.0 0.69 8.8 0.0 2.1 2 0 0 2 2 2 2 Diacylglycerol acyltransferase 2-oxoacid_dh PF00198.23 gi|386001264|ref|YP_005919563.1| - 0.026 14.0 0.6 3.2 7.1 0.1 2.2 2 0 0 2 2 2 0 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DUF2525 PF10733.9 gi|386001264|ref|YP_005919563.1| - 0.053 13.8 2.3 6.3 7.1 0.1 3.8 3 0 0 3 3 2 0 Protein of unknown function (DUF2525) PrcB_C PF14343.6 gi|386001264|ref|YP_005919563.1| - 0.057 13.6 0.1 19 5.5 0.0 3.2 2 1 0 2 2 2 0 PrcB C-terminal DHOase PF12890.7 gi|386001264|ref|YP_005919563.1| - 0.061 13.3 2.6 1.3 8.9 0.2 2.9 2 0 0 2 2 2 0 Dihydro-orotase-like DUF5004 PF16395.5 gi|386001264|ref|YP_005919563.1| - 0.061 13.3 8.0 0.37 10.8 1.5 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5004) Amidase02_C PF12123.8 gi|386001264|ref|YP_005919563.1| - 1 9.1 6.1 8.8 6.1 0.1 3.1 3 0 0 3 3 3 0 N-acetylmuramoyl-l-alanine amidase RNase_PH_C PF03725.15 gi|386001264|ref|YP_005919563.1| - 1.2 9.2 3.8 35 4.5 0.2 3.4 3 0 0 3 3 3 0 3' exoribonuclease family, domain 2 ZoocinA_TRD PF16775.5 gi|386001264|ref|YP_005919563.1| - 1.9 8.7 6.6 8.6 6.6 0.2 3.9 3 1 1 4 4 4 0 Target recognition domain of lytic exoenzyme Myco_19_kDa PF05481.12 gi|386001264|ref|YP_005919563.1| - 2.9 8.2 5.6 6.5 7.1 0.3 3.4 3 0 0 3 3 3 0 Mycobacterium 19 kDa lipoprotein antigen CT47 PF15623.6 gi|386001264|ref|YP_005919563.1| - 3.6 7.4 16.9 6.2 6.6 16.9 1.3 1 0 0 1 1 1 0 Cancer/testis gene family 47 PDZ_2 PF13180.6 gi|386001264|ref|YP_005919563.1| - 5.7 7.3 7.1 6.4 7.2 1.2 2.8 2 0 0 2 2 2 0 PDZ domain Radical_SAM PF04055.21 gi|386001265|ref|YP_005919564.1| - 2e-18 67.3 0.0 2.9e-18 66.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|386001265|ref|YP_005919564.1| - 0.0029 17.9 0.0 0.0065 16.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.19 gi|386001265|ref|YP_005919564.1| - 0.0034 17.1 1.2 0.23 11.3 0.0 2.7 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|386001265|ref|YP_005919564.1| - 0.023 14.1 5.9 1 8.9 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|386001265|ref|YP_005919564.1| - 0.029 14.3 8.7 12 5.9 0.0 5.2 6 0 0 6 6 6 0 zinc-ribbon domain DZR PF12773.7 gi|386001265|ref|YP_005919564.1| - 0.036 14.1 0.1 0.036 14.1 0.1 3.0 3 1 0 3 3 3 0 Double zinc ribbon zf-ACC PF17848.1 gi|386001265|ref|YP_005919564.1| - 0.057 13.5 2.7 5.5 7.1 0.1 2.8 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-TFIIB PF13453.6 gi|386001265|ref|YP_005919564.1| - 0.079 12.3 1.6 0.11 11.8 0.5 1.9 2 0 0 2 2 2 0 Transcription factor zinc-finger CcmH PF03918.14 gi|386001265|ref|YP_005919564.1| - 0.14 11.5 0.0 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 Cytochrome C biogenesis protein Zn-ribbon_8 PF09723.10 gi|386001265|ref|YP_005919564.1| - 0.52 10.5 0.1 0.52 10.5 0.1 3.9 4 0 0 4 4 4 0 Zinc ribbon domain ADK_lid PF05191.14 gi|386001265|ref|YP_005919564.1| - 1.1 9.4 5.0 3.8 7.6 0.0 3.2 3 0 0 3 3 3 0 Adenylate kinase, active site lid ThiC_Rad_SAM PF01964.18 gi|386001266|ref|YP_005919565.1| - 1.5e-142 475.3 0.0 1.8e-142 475.1 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family NIR_SIR PF01077.22 gi|386001267|ref|YP_005919566.1| - 4.2e-31 107.6 0.0 6.7e-31 106.9 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|386001267|ref|YP_005919566.1| - 2.8e-13 49.5 0.0 4.8e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain DUF166 PF02593.14 gi|386001268|ref|YP_005919567.1| - 1.5e-68 230.6 0.0 1.8e-68 230.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function HxlR PF01638.17 gi|386001269|ref|YP_005919568.1| - 4.3e-23 81.0 0.4 5.5e-23 80.6 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|386001269|ref|YP_005919568.1| - 0.00025 21.0 0.1 0.00037 20.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|386001269|ref|YP_005919568.1| - 0.00057 19.7 0.2 0.0014 18.5 0.1 1.7 1 1 0 1 1 1 1 MarR family Replic_Relax PF13814.6 gi|386001269|ref|YP_005919568.1| - 0.0018 18.4 0.0 0.002 18.2 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_24 PF13412.6 gi|386001269|ref|YP_005919568.1| - 0.0027 17.2 0.1 0.0055 16.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|386001269|ref|YP_005919568.1| - 0.0053 16.9 0.0 0.0075 16.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|386001269|ref|YP_005919568.1| - 0.0086 16.0 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4423 PF14394.6 gi|386001269|ref|YP_005919568.1| - 0.0097 15.6 0.0 0.012 15.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_45 PF14947.6 gi|386001269|ref|YP_005919568.1| - 0.021 14.8 0.0 0.037 14.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|386001269|ref|YP_005919568.1| - 0.023 14.6 0.1 0.051 13.6 0.1 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain DUF505 PF04458.12 gi|386001269|ref|YP_005919568.1| - 0.037 12.4 0.0 0.037 12.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) MarR PF01047.22 gi|386001269|ref|YP_005919568.1| - 0.047 13.6 0.0 0.093 12.7 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.10 gi|386001269|ref|YP_005919568.1| - 0.074 13.0 0.7 0.34 10.9 0.2 2.3 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain DprA_WH PF17782.1 gi|386001269|ref|YP_005919568.1| - 0.14 12.2 0.0 0.61 10.3 0.0 1.9 2 0 0 2 2 2 0 DprA winged helix domain DUF11 PF01345.18 gi|386001271|ref|YP_005919570.1| - 3.2e-35 120.3 32.9 8.9e-11 42.0 0.3 9.5 10 1 0 10 10 9 5 Domain of unknown function DUF11 CARDB PF07705.11 gi|386001271|ref|YP_005919570.1| - 2.8e-05 24.3 1.8 1.4 9.2 0.0 6.5 6 0 0 6 6 6 1 CARDB NPCBM_assoc PF10633.9 gi|386001271|ref|YP_005919570.1| - 0.00031 21.0 10.5 6.8 7.0 0.0 6.4 7 0 0 7 7 7 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4139 PF13598.6 gi|386001271|ref|YP_005919570.1| - 0.002 17.9 0.2 0.8 9.4 0.0 3.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4139) Fn3-like PF14310.6 gi|386001271|ref|YP_005919570.1| - 0.0027 17.8 0.2 2.8 8.1 0.0 3.9 3 0 0 3 3 3 1 Fibronectin type III-like domain He_PIG PF05345.12 gi|386001271|ref|YP_005919570.1| - 0.0049 17.0 3.1 0.14 12.4 0.0 5.0 5 0 0 5 5 4 1 Putative Ig domain Myosin_N PF02736.19 gi|386001271|ref|YP_005919570.1| - 0.006 16.4 0.1 5.1 7.0 0.0 3.1 2 0 0 2 2 2 2 Myosin N-terminal SH3-like domain Collagen_bind PF05737.12 gi|386001271|ref|YP_005919570.1| - 0.015 15.5 0.0 1.6 8.9 0.0 2.7 2 0 0 2 2 2 0 Collagen binding domain SAF PF08666.12 gi|386001271|ref|YP_005919570.1| - 0.081 13.6 0.1 34 5.2 0.0 3.2 2 0 0 2 2 2 0 SAF domain fn3_5 PF06280.12 gi|386001271|ref|YP_005919570.1| - 0.7 10.6 10.0 31 5.3 0.0 5.6 6 0 0 6 6 5 0 Fn3-like domain LBP_C PF17386.2 gi|386001271|ref|YP_005919570.1| - 1.3 9.0 4.5 3.2 7.7 0.1 3.4 2 0 0 2 2 2 0 Lacto-N-biose phosphorylase C-terminal domain SpaA PF17802.1 gi|386001271|ref|YP_005919570.1| - 1.3 9.4 15.8 18 5.7 0.2 5.5 2 1 2 5 5 4 0 Prealbumin-like fold domain PKD PF00801.20 gi|386001272|ref|YP_005919571.1| - 9e-19 67.1 11.5 9.4e-08 31.8 0.1 4.5 4 0 0 4 4 4 3 PKD domain He_PIG PF05345.12 gi|386001272|ref|YP_005919571.1| - 0.00092 19.3 4.5 1.2 9.4 0.1 3.9 4 0 0 4 4 4 2 Putative Ig domain TcfC PF16967.5 gi|386001272|ref|YP_005919571.1| - 0.001 18.5 1.4 0.044 13.3 0.2 3.2 3 0 0 3 3 3 1 E-set like domain DUF4625 PF15418.6 gi|386001272|ref|YP_005919571.1| - 0.0024 18.1 0.0 2.1 8.6 0.0 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF4625) Y_Y_Y PF07495.13 gi|386001272|ref|YP_005919571.1| - 0.0074 16.2 0.4 3 7.9 0.1 3.5 4 0 0 4 4 4 1 Y_Y_Y domain Ig_2 PF13895.6 gi|386001272|ref|YP_005919571.1| - 0.036 14.4 1.0 0.1 13.0 0.1 2.2 2 0 0 2 2 2 0 Immunoglobulin domain ChitinaseA_N PF08329.10 gi|386001272|ref|YP_005919571.1| - 0.039 13.6 0.1 7 6.3 0.0 3.1 3 0 0 3 3 3 0 Chitinase A, N-terminal domain BiPBP_C PF06832.12 gi|386001272|ref|YP_005919571.1| - 0.19 11.8 0.0 35 4.5 0.0 3.2 3 0 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family DUF5011 PF16403.5 gi|386001272|ref|YP_005919571.1| - 0.3 11.2 4.9 22 5.3 1.5 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF5011) Beta_helix PF13229.6 gi|386001275|ref|YP_005919574.1| - 3e-66 222.1 86.5 1.4e-25 89.9 26.8 3.8 1 1 3 4 4 4 4 Right handed beta helix region NosD PF05048.13 gi|386001275|ref|YP_005919574.1| - 7.8e-51 172.7 66.2 7.6e-18 64.7 13.2 3.8 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.11 gi|386001275|ref|YP_005919574.1| - 8.7e-13 48.2 39.6 2e-06 27.3 4.6 6.0 1 1 2 3 3 3 3 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.7 gi|386001275|ref|YP_005919574.1| - 4.9e-08 33.1 34.3 2.6e-06 27.4 12.5 4.1 2 2 1 3 3 3 3 Pectate lyase superfamily protein NosD PF05048.13 gi|386001276|ref|YP_005919575.1| - 3.8e-53 180.2 63.8 5.6e-21 74.9 16.4 3.8 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386001276|ref|YP_005919575.1| - 2.5e-52 176.9 73.8 1.1e-22 80.6 30.2 3.5 1 1 2 3 3 3 3 Right handed beta helix region Pentapeptide PF00805.22 gi|386001277|ref|YP_005919576.1| - 1e-82 271.1 38.8 8.9e-12 44.4 1.7 10.2 1 1 6 10 10 10 10 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|386001277|ref|YP_005919576.1| - 2.7e-38 130.0 0.0 6.5e-08 32.6 0.0 5.6 1 1 4 5 5 5 5 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|386001277|ref|YP_005919576.1| - 3.3e-34 116.8 0.0 0.00033 20.7 0.3 8.5 2 1 8 10 10 10 9 Pentapeptide repeats (9 copies) CfAFP PF05264.11 gi|386001277|ref|YP_005919576.1| - 0.19 11.7 0.0 27 4.7 0.0 3.2 2 2 2 4 4 4 0 Choristoneura fumiferana antifreeze protein (CfAFP) Metallophos_2 PF12850.7 gi|386001280|ref|YP_005919579.1| - 7e-23 81.6 0.0 8e-23 81.4 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|386001280|ref|YP_005919579.1| - 0.00029 21.4 0.1 0.034 14.6 0.0 2.2 1 1 0 2 2 2 2 Calcineurin-like phosphoesterase SIS PF01380.22 gi|386001281|ref|YP_005919580.1| - 3e-09 36.8 0.0 0.0005 19.9 0.0 2.9 2 1 0 2 2 2 2 SIS domain Flavoprotein PF02441.19 gi|386001281|ref|YP_005919580.1| - 0.068 12.9 0.0 15 5.3 0.0 2.4 2 0 0 2 2 2 0 Flavoprotein DUF1297 PF06973.12 gi|386001282|ref|YP_005919581.1| - 4.1e-57 192.8 0.0 5.7e-57 192.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|386001282|ref|YP_005919581.1| - 3.1e-41 140.2 0.0 5.1e-41 139.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|386001282|ref|YP_005919581.1| - 0.012 15.6 0.0 0.025 14.6 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|386001282|ref|YP_005919581.1| - 0.18 11.3 0.0 0.34 10.4 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain IGPD PF00475.18 gi|386001283|ref|YP_005919582.1| - 1.2e-30 106.7 0.0 2.6e-30 105.6 0.0 1.5 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase POR PF01558.18 gi|386001285|ref|YP_005919584.1| - 7.8e-37 127.0 0.0 1.2e-36 126.5 0.0 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|386001285|ref|YP_005919584.1| - 7.6e-22 77.7 0.0 1.2e-21 77.1 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|386001286|ref|YP_005919585.1| - 5.6e-53 180.1 0.0 7.1e-53 179.7 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|386001286|ref|YP_005919585.1| - 1.1e-22 80.3 0.0 2.1e-22 79.4 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|386001286|ref|YP_005919585.1| - 9.3e-05 22.3 0.0 0.00018 21.4 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain AMP-binding PF00501.28 gi|386001287|ref|YP_005919586.1| - 3.5e-76 256.5 0.0 4.6e-76 256.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|386001287|ref|YP_005919586.1| - 4.2e-23 82.1 0.5 1.2e-22 80.7 0.5 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.7 gi|386001287|ref|YP_005919586.1| - 3.8e-08 33.8 8.4 7.5e-08 32.8 8.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386001287|ref|YP_005919586.1| - 2.3e-06 27.2 16.6 0.001 18.8 4.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386001287|ref|YP_005919586.1| - 3.8e-06 26.9 7.0 1e-05 25.5 7.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001287|ref|YP_005919586.1| - 6.4e-06 26.2 9.5 2.2e-05 24.5 9.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386001287|ref|YP_005919586.1| - 3.3e-05 23.9 8.4 0.00021 21.4 9.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386001287|ref|YP_005919586.1| - 6.6e-05 23.4 3.2 0.16 12.5 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001287|ref|YP_005919586.1| - 6.6e-05 22.8 13.3 0.017 15.2 1.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386001287|ref|YP_005919586.1| - 0.00015 21.7 16.1 0.037 14.1 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386001287|ref|YP_005919586.1| - 0.00048 20.5 4.4 0.27 11.7 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|386001287|ref|YP_005919586.1| - 0.00079 20.2 2.7 0.55 11.1 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386001287|ref|YP_005919586.1| - 0.0013 19.0 12.4 0.036 14.6 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|386001287|ref|YP_005919586.1| - 0.0019 18.7 9.3 0.0054 17.2 1.1 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|386001287|ref|YP_005919586.1| - 0.0027 18.6 12.6 0.024 15.6 2.3 2.5 1 1 2 3 3 3 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|386001287|ref|YP_005919586.1| - 0.33 11.7 4.1 0.77 10.5 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|386001287|ref|YP_005919586.1| - 6.2 8.0 16.1 5.4 8.2 4.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Cupin_2 PF07883.11 gi|386001288|ref|YP_005919587.1| - 2.9e-15 55.7 0.0 8.7e-15 54.2 0.0 1.7 2 0 0 2 2 2 1 Cupin domain HTH_19 PF12844.7 gi|386001288|ref|YP_005919587.1| - 3e-09 36.8 0.1 4.7e-09 36.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|386001288|ref|YP_005919587.1| - 5.5e-05 23.1 0.1 8.2e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|386001288|ref|YP_005919587.1| - 0.00077 19.8 0.0 0.0013 19.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.19 gi|386001288|ref|YP_005919587.1| - 0.0033 17.3 0.0 0.0053 16.7 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Asp_Arg_Hydrox PF05118.15 gi|386001288|ref|YP_005919587.1| - 0.04 13.8 0.0 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase YycC PF14174.6 gi|386001288|ref|YP_005919587.1| - 0.043 13.6 0.1 0.083 12.7 0.1 1.4 1 0 0 1 1 1 0 YycC-like protein Cupin_1 PF00190.22 gi|386001288|ref|YP_005919587.1| - 0.072 12.7 0.0 0.097 12.3 0.0 1.3 1 0 0 1 1 1 0 Cupin CENP-C_C PF11699.8 gi|386001288|ref|YP_005919587.1| - 0.081 13.2 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Mif2/CENP-C like Archease PF01951.16 gi|386001289|ref|YP_005919588.1| - 5.5e-42 143.3 0.0 6.8e-42 143.0 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RtcB PF01139.17 gi|386001290|ref|YP_005919589.1| - 8.2e-163 542.4 0.0 9.3e-163 542.2 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB SpoU_methylase PF00588.19 gi|386001291|ref|YP_005919590.1| - 9.5e-32 110.1 0.0 1.4e-31 109.6 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|386001291|ref|YP_005919590.1| - 0.11 12.3 0.0 0.31 10.9 0.0 1.7 1 1 0 1 1 1 0 SAM-dependent RNA methyltransferase RDD PF06271.12 gi|386001292|ref|YP_005919591.1| - 9.6e-23 81.0 3.7 1.2e-22 80.7 3.7 1.1 1 0 0 1 1 1 1 RDD family RDD PF06271.12 gi|386001293|ref|YP_005919592.1| - 4.6e-24 85.2 3.6 5.5e-24 85.0 3.6 1.1 1 0 0 1 1 1 1 RDD family DUF166 PF02593.14 gi|386001295|ref|YP_005919594.1| - 5.3e-69 232.1 0.0 6.1e-69 231.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function Peptidase_M20 PF01546.28 gi|386001296|ref|YP_005919595.1| - 4.1e-22 78.9 0.0 7.9e-22 78.0 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|386001296|ref|YP_005919595.1| - 0.00056 19.7 0.4 0.0011 18.7 0.1 1.7 2 0 0 2 2 2 1 Peptidase family M28 M20_dimer PF07687.14 gi|386001296|ref|YP_005919595.1| - 0.0078 16.1 0.1 0.021 14.7 0.1 1.8 1 1 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 gi|386001296|ref|YP_005919595.1| - 0.01 14.9 0.1 0.23 10.5 0.1 2.6 3 0 0 3 3 3 1 M42 glutamyl aminopeptidase NHL PF01436.21 gi|386001297|ref|YP_005919596.1| - 2.1e-10 40.1 2.1 0.0011 18.9 0.1 3.3 3 0 0 3 3 3 3 NHL repeat SGL PF08450.12 gi|386001297|ref|YP_005919596.1| - 2.2e-09 37.3 0.4 0.00078 19.1 0.0 2.1 1 1 1 2 2 2 2 SMP-30/Gluconolactonase/LRE-like region Phytase-like PF13449.6 gi|386001297|ref|YP_005919596.1| - 0.004 17.1 0.1 1.7 8.5 0.0 2.0 1 1 1 2 2 2 2 Esterase-like activity of phytase SdiA-regulated PF06977.11 gi|386001297|ref|YP_005919596.1| - 0.014 14.7 0.0 0.054 12.7 0.0 1.6 1 1 1 2 2 2 0 SdiA-regulated ComJ PF11033.8 gi|386001297|ref|YP_005919596.1| - 0.039 13.7 0.0 1.2 8.8 0.0 2.2 1 1 0 2 2 2 0 Competence protein J (ComJ) DUF1998 PF09369.10 gi|386001298|ref|YP_005919597.1| - 0.013 16.2 0.0 0.016 16.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1998) Pentapeptide_3 PF13576.6 gi|386001299|ref|YP_005919598.1| - 3.9e-26 91.0 31.5 6e-10 39.1 3.3 4.8 4 1 1 5 5 5 4 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|386001299|ref|YP_005919598.1| - 2.3 8.0 17.2 3.9 7.2 3.6 6.5 6 2 0 6 6 6 0 Pentapeptide repeats (8 copies) Methyltransf_25 PF13649.6 gi|386001300|ref|YP_005919599.1| - 0.00024 21.7 0.0 0.00063 20.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386001300|ref|YP_005919599.1| - 0.0033 18.2 0.0 0.0074 17.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|386001300|ref|YP_005919599.1| - 0.0084 15.4 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain MTS PF05175.14 gi|386001300|ref|YP_005919599.1| - 0.01 15.4 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|386001300|ref|YP_005919599.1| - 0.042 13.6 0.0 0.071 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Fic PF02661.18 gi|386001301|ref|YP_005919600.1| - 6.9e-20 71.8 0.0 1.9e-19 70.3 0.0 1.8 1 0 0 1 1 1 1 Fic/DOC family DUF3375 PF11855.8 gi|386001301|ref|YP_005919600.1| - 0.0012 17.9 0.1 0.0024 16.9 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3375) HTH_28 PF13518.6 gi|386001301|ref|YP_005919600.1| - 0.0025 17.9 0.5 0.0076 16.4 0.5 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain Fic_N PF13784.6 gi|386001301|ref|YP_005919600.1| - 0.0058 16.7 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 Fic/DOC family N-terminal HTH_23 PF13384.6 gi|386001301|ref|YP_005919600.1| - 0.021 14.6 0.3 0.099 12.5 0.3 2.1 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 gi|386001301|ref|YP_005919600.1| - 0.15 12.0 1.8 0.34 10.8 0.8 2.2 2 0 0 2 2 2 0 MarR family PaaX PF07848.12 gi|386001301|ref|YP_005919600.1| - 0.17 12.1 0.9 3.1 8.1 0.1 2.4 2 0 0 2 2 2 0 PaaX-like protein ABC_tran_CTD PF16326.5 gi|386001302|ref|YP_005919601.1| - 0.15 12.3 0.0 0.52 10.6 0.0 1.9 1 0 0 1 1 1 0 ABC transporter C-terminal domain HLH PF00010.26 gi|386001302|ref|YP_005919601.1| - 0.6 10.1 2.8 3.8 7.6 0.4 2.5 2 0 0 2 2 2 0 Helix-loop-helix DNA-binding domain CCG PF02754.16 gi|386001303|ref|YP_005919602.1| - 0.001 19.2 0.4 0.0025 18.0 0.1 1.7 2 0 0 2 2 2 1 Cysteine-rich domain zf-CSL PF05207.13 gi|386001303|ref|YP_005919602.1| - 0.028 14.1 0.1 0.058 13.1 0.1 1.5 1 0 0 1 1 1 0 CSL zinc finger HicB_lk_antitox PF15919.5 gi|386001304|ref|YP_005919603.1| - 4.2e-13 49.5 0.0 4.6e-13 49.3 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|386001305|ref|YP_005919604.1| - 2.1e-07 30.9 0.8 2.3e-07 30.7 0.1 1.4 2 0 0 2 2 2 1 HicA toxin of bacterial toxin-antitoxin, CCG PF02754.16 gi|386001306|ref|YP_005919605.1| - 1.5e-21 76.4 0.2 1.6e-09 37.8 0.0 2.7 2 0 0 2 2 2 2 Cysteine-rich domain B12-binding_2 PF02607.17 gi|386001306|ref|YP_005919605.1| - 0.32 11.5 2.0 2.1 8.8 1.6 2.5 2 1 0 2 2 2 0 B12 binding domain DUF4110 PF13422.6 gi|386001306|ref|YP_005919605.1| - 1.1 9.3 4.8 14 5.8 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4110) Fer4_8 PF13183.6 gi|386001307|ref|YP_005919606.1| - 2.3e-10 40.8 5.8 4.7e-10 39.8 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386001307|ref|YP_005919606.1| - 2.4e-08 34.0 5.8 7.6e-08 32.4 6.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386001307|ref|YP_005919606.1| - 5.6e-08 33.2 5.5 1.3e-07 32.0 5.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386001307|ref|YP_005919606.1| - 1.3e-05 25.6 6.9 3.9e-05 24.1 7.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001307|ref|YP_005919606.1| - 1.8e-05 24.8 11.8 4.5e-05 23.5 11.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386001307|ref|YP_005919606.1| - 8.9e-05 22.1 10.6 0.0038 17.0 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386001307|ref|YP_005919606.1| - 0.00013 22.0 9.2 0.00036 20.6 9.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001307|ref|YP_005919606.1| - 0.0017 18.3 14.7 0.0041 17.1 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386001307|ref|YP_005919606.1| - 0.011 15.8 2.3 0.011 15.8 2.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|386001307|ref|YP_005919606.1| - 0.011 16.1 2.6 0.011 16.1 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386001307|ref|YP_005919606.1| - 0.061 14.3 13.8 1.9 9.5 13.4 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|386001307|ref|YP_005919606.1| - 0.11 13.5 15.0 0.5 11.4 4.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|386001307|ref|YP_005919606.1| - 0.41 11.4 4.2 18 6.2 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|386001307|ref|YP_005919606.1| - 0.67 10.2 9.3 0.79 9.9 1.3 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|386001307|ref|YP_005919606.1| - 2 9.3 13.5 0.29 12.0 3.0 2.5 1 1 2 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386001307|ref|YP_005919606.1| - 4.2 8.0 12.4 0.61 10.7 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|386001308|ref|YP_005919607.1| - 3.6e-43 143.7 79.7 1.2e-08 34.4 3.1 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386001308|ref|YP_005919607.1| - 1.1e-34 118.8 54.5 3.4e-11 43.5 5.4 4.7 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386001308|ref|YP_005919607.1| - 2e-30 103.5 78.6 2.7e-08 33.5 2.4 8.4 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386001308|ref|YP_005919607.1| - 8.6e-28 96.2 55.0 1.9e-07 31.1 7.9 5.8 5 1 0 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386001308|ref|YP_005919607.1| - 8.7e-28 96.3 55.9 1e-08 35.2 3.6 5.3 3 2 2 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001308|ref|YP_005919607.1| - 6.9e-27 93.3 55.9 5.4e-05 23.2 9.1 6.9 5 2 2 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001308|ref|YP_005919607.1| - 4.5e-21 73.6 72.1 4.7e-06 26.4 1.2 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386001308|ref|YP_005919607.1| - 4.9e-20 72.2 53.8 0.0013 19.7 0.2 7.9 5 2 4 9 9 9 6 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|386001308|ref|YP_005919607.1| - 2.5e-14 53.4 57.2 0.0012 19.3 9.3 6.6 4 2 2 6 6 6 6 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386001308|ref|YP_005919607.1| - 3.3e-13 49.0 75.9 0.0016 18.8 1.8 8.2 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_15 PF13459.6 gi|386001308|ref|YP_005919607.1| - 7.6e-10 39.4 58.3 0.0039 17.9 1.2 8.2 7 1 0 7 7 6 5 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|386001308|ref|YP_005919607.1| - 1.4e-09 38.3 61.4 0.00051 20.5 5.9 7.0 4 3 2 7 7 7 4 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|386001308|ref|YP_005919607.1| - 1.4e-07 32.2 47.0 0.018 15.9 0.5 8.2 8 0 0 8 8 8 5 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386001308|ref|YP_005919607.1| - 1.5e-06 28.7 67.2 0.029 14.9 1.3 8.4 7 1 0 7 7 7 5 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|386001308|ref|YP_005919607.1| - 1.7e-05 25.4 103.4 0.0017 19.2 3.3 8.3 8 0 0 8 8 8 4 4Fe-4S binding domain Fer4_18 PF13746.6 gi|386001308|ref|YP_005919607.1| - 7.2 6.9 58.2 2.1 8.6 1.2 7.3 3 2 5 8 8 8 0 4Fe-4S dicluster domain FlpD PF02662.16 gi|386001309|ref|YP_005919608.1| - 8.5e-51 171.1 3.9 2e-49 166.6 0.2 3.7 4 0 0 4 4 4 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.27 gi|386001309|ref|YP_005919608.1| - 3.8e-20 70.8 55.1 1.5e-07 30.9 3.8 5.4 5 1 0 5 5 4 3 4Fe-4S binding domain Pyr_redox_2 PF07992.14 gi|386001309|ref|YP_005919608.1| - 1.6e-18 66.9 0.0 8.6e-18 64.6 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|386001309|ref|YP_005919608.1| - 2.1e-16 60.2 30.3 1.1e-06 29.1 12.9 5.4 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386001309|ref|YP_005919608.1| - 4.1e-14 52.4 42.8 3.8e-09 36.5 13.1 5.5 5 0 0 5 5 5 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386001309|ref|YP_005919608.1| - 1.1e-13 50.5 56.4 3.5e-05 23.7 3.9 5.8 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|386001309|ref|YP_005919608.1| - 4.8e-13 49.0 33.5 2.4e-06 27.6 13.6 4.6 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386001309|ref|YP_005919608.1| - 9.7e-12 45.6 26.8 0.00081 20.3 0.2 5.1 5 0 0 5 5 4 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|386001309|ref|YP_005919608.1| - 1.1e-11 44.0 44.9 0.00054 19.9 4.0 5.5 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|386001309|ref|YP_005919608.1| - 1.9e-11 44.0 32.3 4e-07 30.1 10.4 3.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386001309|ref|YP_005919608.1| - 3.1e-08 33.5 30.4 0.00056 20.2 2.1 5.0 4 0 0 4 4 4 3 4Fe-4S binding domain FAD_oxidored PF12831.7 gi|386001309|ref|YP_005919608.1| - 6.4e-07 29.1 0.2 1.3e-06 28.1 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_8 PF13183.6 gi|386001309|ref|YP_005919608.1| - 1e-06 29.1 26.7 0.0048 17.3 0.0 5.2 4 1 1 5 5 5 2 4Fe-4S dicluster domain DAO PF01266.24 gi|386001309|ref|YP_005919608.1| - 7.6e-06 25.7 1.9 0.0083 15.7 1.0 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|386001309|ref|YP_005919608.1| - 1.1e-05 24.8 0.5 2.1e-05 23.8 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|386001309|ref|YP_005919608.1| - 9.1e-05 22.6 0.0 0.00069 19.8 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|386001309|ref|YP_005919608.1| - 9.4e-05 22.9 0.5 0.00029 21.4 0.2 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_15 PF13459.6 gi|386001309|ref|YP_005919608.1| - 0.00011 22.8 30.8 0.039 14.7 1.6 5.1 4 1 0 4 4 4 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|386001309|ref|YP_005919608.1| - 0.00021 21.8 30.7 0.17 12.4 1.6 5.2 4 1 2 6 6 6 3 4Fe-4S dicluster domain GIDA PF01134.22 gi|386001309|ref|YP_005919608.1| - 0.00067 18.9 0.1 0.00067 18.9 0.1 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Fer4_22 PF17179.4 gi|386001309|ref|YP_005919608.1| - 0.00079 20.2 22.1 0.62 10.9 1.3 4.7 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386001309|ref|YP_005919608.1| - 0.0015 19.0 33.6 0.015 15.9 2.9 4.4 4 0 0 4 4 3 2 4Fe-4S single cluster domain of Ferredoxin I FAD_binding_3 PF01494.19 gi|386001309|ref|YP_005919608.1| - 0.0038 16.5 0.5 0.0062 15.8 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|386001309|ref|YP_005919608.1| - 0.0066 15.2 0.2 0.011 14.5 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein Fer4_3 PF12798.7 gi|386001309|ref|YP_005919608.1| - 0.01 16.7 5.5 0.01 16.7 5.5 6.3 7 0 0 7 7 5 0 4Fe-4S binding domain AlaDh_PNT_C PF01262.21 gi|386001309|ref|YP_005919608.1| - 0.015 14.6 0.1 0.029 13.7 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|386001309|ref|YP_005919608.1| - 0.027 13.7 0.0 0.089 12.0 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|386001309|ref|YP_005919608.1| - 0.035 13.3 0.1 0.068 12.4 0.1 1.4 1 0 0 1 1 1 0 Thi4 family DFP PF04127.15 gi|386001310|ref|YP_005919609.1| - 1.5e-48 165.1 0.2 3e-47 160.9 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|386001310|ref|YP_005919609.1| - 5.6e-36 123.7 0.4 9.5e-36 122.9 0.4 1.4 1 0 0 1 1 1 1 Flavoprotein Pyr_redox PF00070.27 gi|386001310|ref|YP_005919609.1| - 0.013 16.0 0.8 0.097 13.2 0.0 2.8 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_4 PF13439.6 gi|386001310|ref|YP_005919609.1| - 0.098 12.6 1.4 19 5.2 0.1 3.2 2 1 0 2 2 2 0 Glycosyltransferase Family 4 GHMP_kinases_N PF00288.26 gi|386001311|ref|YP_005919610.1| - 0.00021 21.5 6.8 0.00053 20.2 6.8 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain PPS_PS PF02006.16 gi|386001312|ref|YP_005919611.1| - 2.9e-76 254.9 0.1 3.7e-76 254.6 0.1 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Amidohydro_2 PF04909.14 gi|386001312|ref|YP_005919611.1| - 0.02 14.7 0.0 0.034 13.9 0.0 1.4 1 1 0 1 1 1 0 Amidohydrolase TPP_enzyme_M PF00205.22 gi|386001312|ref|YP_005919611.1| - 0.13 12.0 0.5 0.37 10.5 0.1 1.9 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain UvrA_DNA-bind PF17755.1 gi|386001314|ref|YP_005919613.1| - 5.6e-32 110.4 0.0 2.9e-30 104.9 0.0 2.7 2 0 0 2 2 2 1 UvrA DNA-binding domain UvrA_inter PF17760.1 gi|386001314|ref|YP_005919613.1| - 8.7e-27 93.4 0.1 4.8e-26 91.0 0.1 2.3 2 1 0 2 2 2 1 UvrA interaction domain ABC_tran PF00005.27 gi|386001314|ref|YP_005919613.1| - 1.5e-20 74.1 0.3 3.1e-08 34.2 0.1 4.7 4 1 0 4 4 3 3 ABC transporter SMC_N PF02463.19 gi|386001314|ref|YP_005919613.1| - 2.2e-10 40.3 0.0 0.055 12.9 0.0 4.1 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|386001314|ref|YP_005919613.1| - 8.6e-10 38.9 3.0 0.038 13.8 0.0 4.6 5 0 0 5 5 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|386001314|ref|YP_005919613.1| - 5e-09 36.8 0.4 0.0088 16.4 0.5 3.9 3 1 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 gi|386001314|ref|YP_005919613.1| - 1.1e-08 34.6 0.1 0.0059 16.3 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|386001314|ref|YP_005919613.1| - 2.2e-06 28.3 0.1 0.0045 17.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|386001314|ref|YP_005919613.1| - 2.2e-05 24.7 0.4 0.29 11.4 0.0 3.6 4 0 0 4 4 3 2 AAA domain RsgA_GTPase PF03193.16 gi|386001314|ref|YP_005919613.1| - 3e-05 24.0 0.0 0.19 11.6 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_25 PF13481.6 gi|386001314|ref|YP_005919613.1| - 3.1e-05 23.7 0.0 0.45 10.1 0.0 3.1 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|386001314|ref|YP_005919613.1| - 3.5e-05 23.8 0.0 0.49 10.4 0.0 3.2 3 0 0 3 3 3 2 AAA domain BCA_ABC_TP_C PF12399.8 gi|386001314|ref|YP_005919613.1| - 4.8e-05 23.2 6.6 0.019 14.9 0.8 2.7 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter AAA_15 PF13175.6 gi|386001314|ref|YP_005919613.1| - 5.4e-05 23.1 0.3 7 6.3 0.0 4.1 4 0 0 4 4 4 0 AAA ATPase domain Viral_helicase1 PF01443.18 gi|386001314|ref|YP_005919613.1| - 6.8e-05 22.7 0.0 0.12 12.1 0.0 2.4 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase ATPase PF06745.13 gi|386001314|ref|YP_005919613.1| - 0.00016 21.1 0.0 0.16 11.3 0.0 2.6 2 0 0 2 2 2 2 KaiC AAA_18 PF13238.6 gi|386001314|ref|YP_005919613.1| - 0.00017 22.1 0.1 0.35 11.4 0.1 3.1 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|386001314|ref|YP_005919613.1| - 0.00035 19.9 0.1 0.28 10.4 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 gi|386001314|ref|YP_005919613.1| - 0.00051 20.0 0.1 1.1 9.1 0.0 2.8 3 0 0 3 3 3 2 Adenylylsulphate kinase DnaJ_CXXCXGXG PF00684.19 gi|386001314|ref|YP_005919613.1| - 0.00061 20.1 4.9 0.023 15.1 0.2 3.5 3 1 0 3 3 3 1 DnaJ central domain T2SSE PF00437.20 gi|386001314|ref|YP_005919613.1| - 0.00086 18.4 0.1 0.74 8.8 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein cobW PF02492.19 gi|386001314|ref|YP_005919613.1| - 0.00095 18.8 0.4 0.52 9.9 0.1 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|386001314|ref|YP_005919613.1| - 0.0016 18.4 0.1 0.99 9.3 0.0 2.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|386001314|ref|YP_005919613.1| - 0.0017 18.1 0.5 3.9 7.1 0.0 3.1 3 0 0 3 3 3 2 AAA domain NACHT PF05729.12 gi|386001314|ref|YP_005919613.1| - 0.0034 17.3 0.0 0.93 9.4 0.0 2.5 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.6 gi|386001314|ref|YP_005919613.1| - 0.0049 17.0 5.5 0.85 9.8 0.5 3.5 4 1 0 4 4 2 2 AAA domain MeaB PF03308.16 gi|386001314|ref|YP_005919613.1| - 0.015 14.3 0.1 7.2 5.5 0.0 2.9 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|386001314|ref|YP_005919613.1| - 0.016 15.6 0.0 3.3 8.1 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_30 PF13604.6 gi|386001314|ref|YP_005919613.1| - 0.021 14.6 0.1 10 5.8 0.0 2.7 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|386001314|ref|YP_005919613.1| - 0.034 14.0 1.6 9.7 6.1 0.0 3.1 3 0 0 3 3 2 0 NTPase Zn-ribbon_8 PF09723.10 gi|386001314|ref|YP_005919613.1| - 0.099 12.8 8.4 1.5 9.0 0.3 3.5 3 0 0 3 3 3 0 Zinc ribbon domain AAA_28 PF13521.6 gi|386001314|ref|YP_005919613.1| - 0.11 12.7 1.9 5 7.3 0.0 3.2 3 0 0 3 3 3 0 AAA domain DAP3 PF10236.9 gi|386001314|ref|YP_005919613.1| - 0.12 11.5 0.1 5.8 6.0 0.1 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 MMR_HSR1 PF01926.23 gi|386001314|ref|YP_005919613.1| - 0.17 12.0 0.1 25 5.0 0.0 3.1 3 0 0 3 3 3 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|386001314|ref|YP_005919613.1| - 0.21 10.7 0.0 13 4.9 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain Anti-TRAP PF15777.5 gi|386001314|ref|YP_005919613.1| - 0.31 11.0 9.7 4.3 7.4 0.6 3.8 4 0 0 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein Lar_restr_allev PF14354.6 gi|386001314|ref|YP_005919613.1| - 6.1 7.3 8.1 3.9 7.9 0.1 3.2 3 0 0 3 3 3 0 Restriction alleviation protein Lar NTP_transf_2 PF01909.23 gi|386001315|ref|YP_005919614.1| - 8.5e-14 51.6 0.0 9.6e-14 51.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|386001315|ref|YP_005919614.1| - 2.8e-09 37.0 0.0 3e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase tRNA-synt_2d PF01409.20 gi|386001315|ref|YP_005919614.1| - 0.069 12.6 0.1 0.084 12.3 0.1 1.1 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) Amidoligase_2 PF12224.8 gi|386001315|ref|YP_005919614.1| - 0.098 12.3 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Putative amidoligase enzyme ATPase_gene1 PF09527.10 gi|386001317|ref|YP_005919616.1| - 1.7e-13 50.5 4.2 2.1e-13 50.2 4.2 1.1 1 0 0 1 1 1 1 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Rick_17kDa_Anti PF05433.15 gi|386001317|ref|YP_005919616.1| - 0.00098 18.9 2.6 0.0014 18.4 2.6 1.3 1 0 0 1 1 1 1 Glycine zipper 2TM domain DUF4203 PF13886.6 gi|386001317|ref|YP_005919616.1| - 0.01 15.5 0.8 0.01 15.5 0.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) Gly-zipper_YMGG PF13441.6 gi|386001317|ref|YP_005919616.1| - 0.026 14.3 4.4 0.053 13.3 4.4 1.5 1 1 0 1 1 1 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|386001317|ref|YP_005919616.1| - 0.04 13.9 7.5 0.076 13.0 6.8 1.7 1 1 1 2 2 2 0 Glycine zipper Bacteriocin_IIc PF10439.9 gi|386001317|ref|YP_005919616.1| - 0.066 13.3 5.0 0.086 13.0 5.0 1.2 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide LapA_dom PF06305.11 gi|386001317|ref|YP_005919616.1| - 0.085 12.7 1.0 8.4 6.3 0.0 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Romo1 PF10247.9 gi|386001317|ref|YP_005919616.1| - 0.11 12.9 0.5 0.11 12.9 0.5 2.2 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 MadM PF03818.13 gi|386001317|ref|YP_005919616.1| - 0.22 11.4 0.8 0.22 11.4 0.8 2.1 2 0 0 2 2 2 0 Malonate/sodium symporter MadM subunit UPF0154 PF03672.13 gi|386001317|ref|YP_005919616.1| - 1.8 8.6 3.8 16 5.6 0.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) Tim17 PF02466.19 gi|386001317|ref|YP_005919616.1| - 2.3 8.7 6.7 0.84 10.0 0.8 2.0 1 1 1 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family YtxH PF12732.7 gi|386001317|ref|YP_005919616.1| - 3.3 8.3 7.8 6.1 7.5 0.2 2.2 1 1 1 2 2 2 0 YtxH-like protein DUF1043 PF06295.12 gi|386001317|ref|YP_005919616.1| - 3.4 7.7 4.9 8.6 6.4 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) DUF3169 PF11368.8 gi|386001317|ref|YP_005919616.1| - 4.6 6.7 7.8 22 4.5 8.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3169) Methyltransf_25 PF13649.6 gi|386001320|ref|YP_005919619.1| - 2.2e-14 54.0 0.0 4.7e-14 52.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386001320|ref|YP_005919619.1| - 1.4e-11 44.8 0.0 2.4e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386001320|ref|YP_005919619.1| - 5.7e-09 35.6 0.0 8.5e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|386001320|ref|YP_005919619.1| - 9.8e-09 35.9 0.0 3.7e-08 34.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386001320|ref|YP_005919619.1| - 6.4e-08 32.6 0.0 8.4e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386001320|ref|YP_005919619.1| - 2e-05 24.4 0.0 4e-05 23.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|386001320|ref|YP_005919619.1| - 0.0012 18.2 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|386001320|ref|YP_005919619.1| - 0.0035 17.1 0.0 0.0047 16.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.11 gi|386001320|ref|YP_005919619.1| - 0.011 14.8 0.0 0.014 14.4 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_18 PF12847.7 gi|386001320|ref|YP_005919619.1| - 0.033 14.1 0.0 0.058 13.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF4870 PF09685.10 gi|386001321|ref|YP_005919620.1| - 7e-36 122.7 9.2 1.6e-35 121.5 9.2 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4870) Atthog PF18800.1 gi|386001321|ref|YP_005919620.1| - 0.0011 18.8 0.5 0.0015 18.4 0.5 1.1 1 0 0 1 1 1 1 Attenuator of Hedgehog FtsX PF02687.21 gi|386001321|ref|YP_005919620.1| - 0.004 17.6 0.7 0.004 17.6 0.7 2.1 1 1 1 2 2 2 1 FtsX-like permease family DUF2207 PF09972.9 gi|386001321|ref|YP_005919620.1| - 0.026 13.3 3.1 0.029 13.1 3.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) 4HBT PF03061.22 gi|386001322|ref|YP_005919621.1| - 1.9e-09 37.7 0.0 2.7e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|386001322|ref|YP_005919621.1| - 0.0034 17.5 0.0 0.0051 16.9 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|386001322|ref|YP_005919621.1| - 0.069 13.4 0.0 0.09 13.0 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily Acetyltransf_6 PF13480.7 gi|386001322|ref|YP_005919621.1| - 0.074 13.2 0.0 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain SSF PF00474.17 gi|386001323|ref|YP_005919622.1| - 1.2e-61 208.9 45.9 1.4e-61 208.6 45.9 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family MscL PF01741.18 gi|386001325|ref|YP_005919624.1| - 2e-43 147.5 1.1 2.3e-43 147.3 1.1 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL UPF0547 PF10571.9 gi|386001325|ref|YP_005919624.1| - 1.9e-05 24.6 5.0 3.1e-05 24.0 5.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF4577 PF15145.6 gi|386001325|ref|YP_005919624.1| - 0.013 15.5 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4577) DZR PF12773.7 gi|386001325|ref|YP_005919624.1| - 0.016 15.2 2.0 0.023 14.7 2.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-UDP PF14569.6 gi|386001325|ref|YP_005919624.1| - 0.037 14.2 0.4 0.06 13.5 0.4 1.4 1 0 0 1 1 1 0 Zinc-binding RING-finger UPF0239 PF06783.11 gi|386001325|ref|YP_005919624.1| - 0.043 14.0 0.0 0.059 13.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0239) YoaP PF14268.6 gi|386001325|ref|YP_005919624.1| - 0.072 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 YoaP-like zinc_ribbon_2 PF13240.6 gi|386001325|ref|YP_005919624.1| - 0.23 11.3 2.7 0.5 10.2 2.4 1.7 1 1 1 2 2 2 0 zinc-ribbon domain FeoB_associated PF12669.7 gi|386001325|ref|YP_005919624.1| - 0.3 11.5 5.3 0.37 11.2 2.1 2.6 2 1 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DUF3487 PF11990.8 gi|386001325|ref|YP_005919624.1| - 0.58 10.1 5.2 8.3 6.3 1.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) zf-ribbon_3 PF13248.6 gi|386001325|ref|YP_005919624.1| - 0.63 9.5 4.9 1.8 8.1 4.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain sCache_2 PF17200.4 gi|386001326|ref|YP_005919625.1| - 2.9e-49 166.9 0.0 6.7e-19 68.3 0.0 3.6 3 1 0 3 3 3 3 Single Cache domain 2 dCache_2 PF08269.11 gi|386001326|ref|YP_005919625.1| - 1e-41 143.0 0.0 5.4e-20 71.7 0.0 3.4 2 1 0 2 2 2 2 Cache domain Cache_3-Cache_2 PF17201.4 gi|386001326|ref|YP_005919625.1| - 0.00074 18.9 0.0 0.07 12.4 0.0 2.1 2 0 0 2 2 2 2 Cache 3/Cache 2 fusion domain WD40 PF00400.32 gi|386001327|ref|YP_005919626.1| - 1.2e-97 317.1 21.8 5.7e-09 36.5 0.1 11.5 11 0 0 11 11 11 11 WD domain, G-beta repeat NB-ARC PF00931.22 gi|386001327|ref|YP_005919626.1| - 1.5e-32 112.8 0.0 2.2e-32 112.2 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain ANAPC4_WD40 PF12894.7 gi|386001327|ref|YP_005919626.1| - 5e-16 58.8 7.8 0.45 10.8 0.1 9.2 1 1 9 10 10 10 7 Anaphase-promoting complex subunit 4 WD40 domain DUF5570 PF17731.1 gi|386001327|ref|YP_005919626.1| - 5.2e-12 46.0 15.3 4.9 7.3 0.5 9.9 2 2 8 10 10 10 2 Family of unknown function (DUF5570) APAF1_C PF17908.1 gi|386001327|ref|YP_005919626.1| - 1.1e-11 44.8 0.0 2e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 APAF-1 helical domain 120_Rick_ant PF12574.8 gi|386001327|ref|YP_005919626.1| - 1.2e-10 41.0 11.1 0.59 9.3 0.1 7.7 2 1 6 8 8 8 4 120 KDa Rickettsia surface antigen Nup160 PF11715.8 gi|386001327|ref|YP_005919626.1| - 1.3e-08 34.0 10.3 4.4 5.8 0.0 9.2 2 2 8 10 10 10 2 Nucleoporin Nup120/160 Cytochrom_D1 PF02239.16 gi|386001327|ref|YP_005919626.1| - 4e-07 28.9 6.3 0.49 8.9 0.1 5.0 1 1 3 5 5 5 4 Cytochrome D1 heme domain Nucleoporin_N PF08801.11 gi|386001327|ref|YP_005919626.1| - 8.4e-07 28.1 0.3 1.6 7.4 0.0 4.4 1 1 4 6 6 6 4 Nup133 N terminal like PD40 PF07676.12 gi|386001327|ref|YP_005919626.1| - 1.2e-05 25.1 0.1 79 3.4 0.0 8.2 10 0 0 10 10 10 0 WD40-like Beta Propeller Repeat RBB1NT PF08169.11 gi|386001327|ref|YP_005919626.1| - 7.6e-05 22.8 0.4 1.2 9.3 0.0 5.4 3 1 2 5 5 5 1 RBB1NT (NUC162) domain WYL_2 PF10902.8 gi|386001327|ref|YP_005919626.1| - 0.0001 22.6 0.0 2.8e+02 2.0 0.0 7.9 3 2 7 10 10 10 0 WYL_2, Sm-like SH3 beta-barrel fold WD40_like PF17005.5 gi|386001327|ref|YP_005919626.1| - 0.00023 20.6 0.0 4 6.7 0.0 4.4 2 1 3 5 5 5 1 WD40-like domain HIRA_B PF09453.10 gi|386001327|ref|YP_005919626.1| - 0.0011 18.8 0.1 1.9e+02 2.0 0.0 6.2 7 0 0 7 7 7 0 HIRA B motif DUF2378 PF09536.10 gi|386001327|ref|YP_005919626.1| - 0.15 11.9 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2378) AAA_16 PF13191.6 gi|386001327|ref|YP_005919626.1| - 0.47 10.8 2.7 0.99 9.8 0.3 2.8 2 1 0 2 2 2 0 AAA ATPase domain DctP PF03480.13 gi|386001328|ref|YP_005919627.1| - 4.6e-39 134.5 0.0 5.5e-39 134.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 Xan_ur_permease PF00860.20 gi|386001330|ref|YP_005919629.1| - 1.1e-31 110.0 27.0 1.4e-31 109.6 27.0 1.0 1 0 0 1 1 1 1 Permease family FUSC-like PF12805.7 gi|386001330|ref|YP_005919629.1| - 0.91 8.5 8.7 2 7.4 8.7 1.6 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS Adenine_deam_C PF13382.6 gi|386001331|ref|YP_005919630.1| - 1.7e-67 226.0 0.4 1e-66 223.5 0.3 2.2 3 0 0 3 3 3 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|386001331|ref|YP_005919630.1| - 1.4e-21 77.2 0.2 1.2e-19 70.9 0.2 2.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|386001331|ref|YP_005919630.1| - 3.2e-11 43.4 2.8 6.6e-06 25.9 0.2 2.3 2 0 0 2 2 2 2 Amidohydrolase family Radical_SAM PF04055.21 gi|386001332|ref|YP_005919631.1| - 3.3e-20 73.1 0.1 2.8e-19 70.1 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|386001332|ref|YP_005919631.1| - 1.4e-10 41.2 0.2 3.5e-10 40.0 0.1 1.7 2 0 0 2 2 2 1 B12 binding domain DUF2802 PF10975.8 gi|386001332|ref|YP_005919631.1| - 0.011 15.9 0.1 0.022 14.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) NifU_N PF01592.16 gi|386001334|ref|YP_005919633.1| - 1.2e-45 154.7 0.1 1.9e-45 154.2 0.1 1.3 1 0 0 1 1 1 1 NifU-like N terminal domain FeS_assembly_P PF01883.19 gi|386001334|ref|YP_005919633.1| - 1.1e-06 28.8 1.8 2.7e-06 27.4 1.0 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein tRNA_anti-codon PF01336.25 gi|386001335|ref|YP_005919634.1| - 3e-08 33.5 0.1 2e-07 30.9 0.3 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.19 gi|386001335|ref|YP_005919634.1| - 7.1e-08 32.7 11.8 7.1e-08 32.7 11.8 2.3 1 1 1 2 2 2 1 DnaJ central domain S1 PF00575.23 gi|386001335|ref|YP_005919634.1| - 2.8e-05 24.4 0.2 2.8e-05 24.4 0.2 1.9 2 0 0 2 2 2 1 S1 RNA binding domain DHH PF01368.20 gi|386001335|ref|YP_005919634.1| - 0.0004 20.6 0.3 0.00085 19.5 0.3 1.5 1 0 0 1 1 1 1 DHH family tRNA_anti_2 PF13742.6 gi|386001335|ref|YP_005919634.1| - 0.0013 18.9 0.0 0.0077 16.4 0.0 2.3 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain zf-ribbon_3 PF13248.6 gi|386001335|ref|YP_005919634.1| - 0.02 14.3 1.0 0.02 14.3 1.0 4.2 5 0 0 5 5 5 0 zinc-ribbon domain S1_2 PF13509.6 gi|386001335|ref|YP_005919634.1| - 0.073 13.1 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 S1 domain DZR PF12773.7 gi|386001335|ref|YP_005919634.1| - 0.09 12.8 21.3 0.98 9.5 2.7 3.2 1 1 2 3 3 3 0 Double zinc ribbon PHF5 PF03660.14 gi|386001335|ref|YP_005919634.1| - 0.75 10.0 11.3 0.33 11.2 7.3 2.3 2 1 0 2 2 2 0 PHF5-like protein zf-CHY PF05495.12 gi|386001335|ref|YP_005919634.1| - 5 7.7 13.9 0.81 10.2 5.4 3.0 1 1 2 3 3 3 0 CHY zinc finger Trm56 PF01994.16 gi|386001336|ref|YP_005919635.1| - 1.3e-48 163.9 0.0 1.5e-48 163.6 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 ATP-grasp_3 PF02655.14 gi|386001337|ref|YP_005919636.1| - 4.1e-37 127.7 0.0 5.5e-37 127.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|386001337|ref|YP_005919636.1| - 5.2e-09 36.0 0.0 1.4e-07 31.3 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|386001337|ref|YP_005919636.1| - 3.3e-06 26.7 0.0 0.0057 16.2 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 gi|386001337|ref|YP_005919636.1| - 0.00063 19.3 0.0 0.098 12.2 0.0 2.4 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.6 gi|386001337|ref|YP_005919636.1| - 0.0013 18.0 0.0 0.0024 17.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp Ins134_P3_kin PF05770.11 gi|386001337|ref|YP_005919636.1| - 0.012 15.1 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain ATP-grasp PF02222.22 gi|386001337|ref|YP_005919636.1| - 0.034 13.7 0.0 0.14 11.7 0.0 1.8 2 0 0 2 2 2 0 ATP-grasp domain RimK PF08443.11 gi|386001337|ref|YP_005919636.1| - 0.05 13.2 0.0 0.2 11.2 0.0 2.0 1 1 0 1 1 1 0 RimK-like ATP-grasp domain CarboxypepD_reg PF13620.6 gi|386001338|ref|YP_005919637.1| - 3.4e-25 88.1 10.9 1.9e-13 50.5 0.6 2.5 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|386001338|ref|YP_005919637.1| - 9e-15 54.5 0.8 3.2e-06 27.0 0.0 2.7 3 0 0 3 3 3 2 CarboxypepD_reg-like domain SdrD_B PF17210.3 gi|386001338|ref|YP_005919637.1| - 1.3e-05 25.3 2.3 0.001 19.3 0.6 2.2 2 0 0 2 2 2 1 SdrD B-like domain Big_1 PF02369.16 gi|386001338|ref|YP_005919637.1| - 4e-05 23.5 3.7 0.058 13.4 0.2 2.8 2 1 0 2 2 2 2 Bacterial Ig-like domain (group 1) PEGA PF08308.11 gi|386001338|ref|YP_005919637.1| - 0.00014 21.6 0.0 0.15 12.0 0.0 2.7 2 1 0 2 2 2 2 PEGA domain Invasin_D3 PF09134.10 gi|386001338|ref|YP_005919637.1| - 0.00029 21.1 0.6 0.31 11.4 0.3 2.4 2 0 0 2 2 2 2 Invasin, domain 3 MetallophosN PF16371.5 gi|386001338|ref|YP_005919637.1| - 0.0019 18.4 2.7 0.32 11.3 0.1 2.5 2 0 0 2 2 2 2 N terminal of Calcineurin-like phosphoesterase Dioxygenase_C PF00775.21 gi|386001338|ref|YP_005919637.1| - 0.0093 15.4 0.2 4.1 6.8 0.0 2.4 2 0 0 2 2 2 2 Dioxygenase CooC_C PF15976.5 gi|386001338|ref|YP_005919637.1| - 0.014 15.4 0.0 7.7 6.6 0.0 2.3 2 0 0 2 2 2 0 CS1-pili formation C-terminal phage_tail_N PF08400.10 gi|386001338|ref|YP_005919637.1| - 0.014 15.4 0.1 0.81 9.7 0.0 2.4 2 0 0 2 2 2 0 Prophage tail fibre N-terminal DUF2012 PF09430.10 gi|386001338|ref|YP_005919637.1| - 0.016 15.4 0.0 0.94 9.6 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2012) S-layer PF07752.11 gi|386001339|ref|YP_005919638.1| - 2.3e-193 639.7 6.1 3.2e-96 321.4 0.6 2.2 2 0 0 2 2 2 2 S-layer protein CarbopepD_reg_2 PF13715.6 gi|386001339|ref|YP_005919638.1| - 4.6e-06 26.6 0.1 0.096 12.7 0.0 3.5 3 0 0 3 3 3 2 CarboxypepD_reg-like domain Big_3_5 PF16640.5 gi|386001339|ref|YP_005919638.1| - 5.4e-06 26.5 13.8 0.0007 19.7 2.4 4.6 4 0 0 4 4 4 1 Bacterial Ig-like domain (group 3) PEGA PF08308.11 gi|386001339|ref|YP_005919638.1| - 3.5e-05 23.6 3.5 1.6 8.6 0.2 4.6 5 0 0 5 5 5 2 PEGA domain CarboxypepD_reg PF13620.6 gi|386001339|ref|YP_005919638.1| - 7e-05 23.0 14.6 0.025 14.8 1.2 4.7 3 1 1 4 4 4 2 Carboxypeptidase regulatory-like domain CARDB PF07705.11 gi|386001339|ref|YP_005919638.1| - 0.00032 20.9 0.7 0.0026 18.0 0.1 2.9 3 0 0 3 3 2 1 CARDB Big_7 PF17957.1 gi|386001339|ref|YP_005919638.1| - 0.0016 19.1 11.7 0.0019 19.0 0.2 4.6 5 0 0 5 5 4 1 Bacterial Ig domain DUF4198 PF10670.9 gi|386001339|ref|YP_005919638.1| - 0.011 16.1 1.4 12 6.2 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4198) Y_Y_Y PF07495.13 gi|386001339|ref|YP_005919638.1| - 0.032 14.2 0.1 0.52 10.3 0.0 3.0 2 0 0 2 2 2 0 Y_Y_Y domain A2M PF00207.22 gi|386001339|ref|YP_005919638.1| - 0.064 13.1 0.2 19 5.2 0.1 2.5 2 0 0 2 2 2 0 Alpha-2-macroglobulin family DUF4179 PF13786.6 gi|386001339|ref|YP_005919638.1| - 0.067 13.7 1.0 4.1 8.0 0.1 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) DUF4981 PF16353.5 gi|386001339|ref|YP_005919638.1| - 0.11 13.0 0.2 22 5.6 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function(DUF4981) Cadherin_5 PF17892.1 gi|386001339|ref|YP_005919638.1| - 0.11 12.5 1.0 0.75 9.8 0.1 3.0 3 0 0 3 3 2 0 Cadherin-like domain PrcB_C PF14343.6 gi|386001339|ref|YP_005919638.1| - 0.21 11.7 2.3 8.1 6.7 0.1 3.3 3 0 0 3 3 3 0 PrcB C-terminal AMP-binding_C_2 PF14535.6 gi|386001340|ref|YP_005919639.1| - 2.6e-29 101.4 0.4 5.5e-29 100.3 0.4 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|386001340|ref|YP_005919639.1| - 1.4e-14 53.6 0.0 1.5e-13 50.2 0.0 2.0 1 1 0 1 1 1 1 AMP-binding enzyme Trypsin_2 PF13365.6 gi|386001342|ref|YP_005919641.1| - 1.6e-10 42.1 0.1 2.5e-10 41.5 0.1 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|386001342|ref|YP_005919641.1| - 5.3e-09 36.2 0.5 1.1e-07 31.9 0.5 2.1 1 1 0 1 1 1 1 Trypsin Peptidase_C3 PF00548.20 gi|386001342|ref|YP_005919641.1| - 0.0024 17.8 0.1 0.0064 16.4 0.1 1.8 2 1 0 2 2 2 1 3C cysteine protease (picornain 3C) TPR_1 PF00515.28 gi|386001343|ref|YP_005919642.1| - 7.7e-43 142.6 0.8 4.9e-11 41.9 0.0 5.4 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386001343|ref|YP_005919642.1| - 1.5e-38 127.8 6.9 7.9e-08 31.8 0.0 5.5 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386001343|ref|YP_005919642.1| - 1.5e-34 117.4 0.6 1.4e-08 34.3 0.1 4.5 2 2 2 4 4 4 4 TPR repeat TPR_8 PF13181.6 gi|386001343|ref|YP_005919642.1| - 4.5e-27 92.0 0.5 9.4e-07 28.6 0.0 5.5 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386001343|ref|YP_005919642.1| - 1.9e-22 79.6 10.6 3.1e-11 43.7 0.3 3.7 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386001343|ref|YP_005919642.1| - 5.3e-20 71.5 5.5 1.4e-07 31.7 0.3 4.0 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001343|ref|YP_005919642.1| - 6.2e-20 70.2 11.8 4.9e-05 23.8 0.2 5.4 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386001343|ref|YP_005919642.1| - 6.5e-20 70.0 1.2 3.1e-05 24.0 0.1 4.5 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386001343|ref|YP_005919642.1| - 4.4e-16 59.1 2.3 3.9e-08 33.7 0.0 2.7 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001343|ref|YP_005919642.1| - 1.6e-14 53.8 4.3 2.1e-07 31.0 0.5 2.6 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001343|ref|YP_005919642.1| - 9.6e-14 50.3 3.0 0.003 17.5 0.0 4.9 4 1 1 5 5 5 3 Tetratricopeptide repeat Beta_helix PF13229.6 gi|386001343|ref|YP_005919642.1| - 3.9e-13 49.6 3.7 5.8e-13 49.0 3.7 1.2 1 0 0 1 1 1 1 Right handed beta helix region Fis1_TPR_C PF14853.6 gi|386001343|ref|YP_005919642.1| - 2.9e-09 36.8 0.2 0.023 14.8 0.0 4.3 4 0 0 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat NosD PF05048.13 gi|386001343|ref|YP_005919642.1| - 6.3e-09 35.5 12.7 3.5e-08 33.0 13.0 1.7 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) TPR_6 PF13174.6 gi|386001343|ref|YP_005919642.1| - 5e-08 33.1 0.7 3.9 8.3 0.0 5.4 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386001343|ref|YP_005919642.1| - 5.4e-07 29.3 8.8 0.31 11.0 0.1 4.9 5 0 0 5 5 4 2 Tetratricopeptide repeat DUF1565 PF07602.11 gi|386001343|ref|YP_005919642.1| - 1.8e-06 27.5 1.1 0.00014 21.3 1.1 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) BTAD PF03704.17 gi|386001343|ref|YP_005919642.1| - 3.3e-05 24.4 4.6 0.065 13.7 0.1 3.1 2 1 1 3 3 3 2 Bacterial transcriptional activator domain NRBF2_MIT PF17169.4 gi|386001343|ref|YP_005919642.1| - 4.3e-05 23.6 0.0 0.23 11.7 0.0 3.9 1 1 3 4 4 4 1 MIT domain of nuclear receptor-binding factor 2 MIT PF04212.18 gi|386001343|ref|YP_005919642.1| - 0.00023 21.1 0.4 7.6 6.7 0.0 4.4 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|386001343|ref|YP_005919642.1| - 0.0019 18.3 0.3 2.9 7.9 0.1 3.5 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) TPR_15 PF13429.6 gi|386001343|ref|YP_005919642.1| - 0.0023 17.2 0.3 7.6 5.7 0.1 3.2 1 1 3 4 4 4 0 Tetratricopeptide repeat DUF5113 PF17140.4 gi|386001343|ref|YP_005919642.1| - 0.0037 17.1 0.0 1.5 8.6 0.0 3.1 1 1 2 3 3 3 1 Domain of unknown function (DUF5113) NARP1 PF12569.8 gi|386001343|ref|YP_005919642.1| - 0.0067 15.4 0.3 0.11 11.4 0.0 2.4 2 1 1 4 4 3 1 NMDA receptor-regulated protein 1 SHNi-TPR PF10516.9 gi|386001343|ref|YP_005919642.1| - 0.0085 15.5 0.0 3.6 7.1 0.0 3.7 4 0 0 4 4 4 1 SHNi-TPR FAT PF02259.23 gi|386001343|ref|YP_005919642.1| - 0.027 13.7 0.1 0.36 10.0 0.0 2.5 1 1 1 2 2 2 0 FAT domain Chondroitinas_B PF14592.6 gi|386001343|ref|YP_005919642.1| - 0.032 13.1 0.0 0.12 11.2 0.0 1.8 2 0 0 2 2 2 0 Chondroitinase B ANAPC3 PF12895.7 gi|386001343|ref|YP_005919642.1| - 0.036 14.3 0.3 1.5 9.1 0.3 2.3 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.14 gi|386001343|ref|YP_005919642.1| - 0.053 14.2 2.0 97 4.1 0.1 4.8 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|386001343|ref|YP_005919642.1| - 0.11 12.2 0.1 8.6 6.0 0.1 3.0 1 1 2 3 3 3 0 Tetratricopeptide repeat-like domain PPR PF01535.20 gi|386001343|ref|YP_005919642.1| - 0.23 11.8 0.5 18 5.8 0.0 3.7 4 0 0 4 4 3 0 PPR repeat CarboxypepD_reg PF13620.6 gi|386001345|ref|YP_005919644.1| - 9.7e-83 272.5 11.0 1.3e-06 28.6 0.0 14.0 14 0 0 14 14 14 13 Carboxypeptidase regulatory-like domain SdrD_B PF17210.3 gi|386001345|ref|YP_005919644.1| - 5.5e-72 239.1 32.3 5.4e-08 33.1 0.2 13.8 11 1 2 13 13 13 13 SdrD B-like domain SpaA PF17802.1 gi|386001345|ref|YP_005919644.1| - 9.2e-47 157.3 45.5 7.1e-05 23.1 0.2 13.4 9 2 3 12 12 12 12 Prealbumin-like fold domain DUF11 PF01345.18 gi|386001345|ref|YP_005919644.1| - 2.7e-12 46.8 0.0 2.8e-06 27.5 0.0 8.7 10 0 0 10 10 10 3 Domain of unknown function DUF11 bMG3 PF11974.8 gi|386001345|ref|YP_005919644.1| - 5.2e-11 42.5 4.2 0.18 11.8 0.0 9.5 13 1 0 13 13 13 2 Bacterial alpha-2-macroglobulin MG3 domain CarbopepD_reg_2 PF13715.6 gi|386001345|ref|YP_005919644.1| - 2.4e-10 40.3 30.3 2.5 8.2 0.1 13.1 13 0 0 13 13 13 4 CarboxypepD_reg-like domain Dioxygenase_C PF00775.21 gi|386001345|ref|YP_005919644.1| - 2.3e-07 30.4 4.1 28 4.1 0.0 9.4 10 0 0 10 10 10 0 Dioxygenase HepII_C PF18675.1 gi|386001345|ref|YP_005919644.1| - 2.8e-05 24.1 9.5 13 6.0 0.1 8.4 9 0 0 9 9 9 2 Heparinase II C-terminal domain DUF824 PF05688.11 gi|386001345|ref|YP_005919644.1| - 0.13 12.1 1.9 14 5.6 0.4 4.0 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) SdrD_B PF17210.3 gi|386001346|ref|YP_005919645.1| - 5.2e-06 26.7 0.2 2.1e-05 24.7 0.1 1.9 1 1 1 2 2 2 1 SdrD B-like domain CarboxypepD_reg PF13620.6 gi|386001346|ref|YP_005919645.1| - 0.019 15.3 0.0 0.041 14.2 0.0 1.7 1 1 0 1 1 1 0 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|386001346|ref|YP_005919645.1| - 0.077 13.0 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 CarboxypepD_reg-like domain SpaA PF17802.1 gi|386001346|ref|YP_005919645.1| - 0.11 12.8 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 Prealbumin-like fold domain AsmA_2 PF13502.6 gi|386001346|ref|YP_005919645.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 AsmA-like C-terminal region PHP_C PF13263.6 gi|386001347|ref|YP_005919646.1| - 0.00026 20.7 0.0 0.0013 18.4 0.0 2.3 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|386001347|ref|YP_005919646.1| - 0.035 14.4 0.0 0.07 13.4 0.0 1.6 1 1 0 1 1 1 0 PHP domain AIRC PF00731.20 gi|386001348|ref|YP_005919647.1| - 1.3e-14 54.0 5.0 2e-14 53.4 5.0 1.3 1 0 0 1 1 1 1 AIR carboxylase VbhA PF18495.1 gi|386001348|ref|YP_005919647.1| - 0.0012 18.7 0.1 0.0033 17.2 0.1 1.8 1 0 0 1 1 1 1 Antitoxin VbhA ABC_tran PF00005.27 gi|386001349|ref|YP_005919648.1| - 3.2e-31 108.7 0.0 5e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001349|ref|YP_005919648.1| - 5.5e-15 56.0 0.4 5.5e-10 39.5 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|386001349|ref|YP_005919648.1| - 2.4e-07 30.4 0.0 2e-06 27.4 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|386001349|ref|YP_005919648.1| - 0.0045 16.7 0.0 0.0091 15.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|386001349|ref|YP_005919648.1| - 0.012 15.3 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|386001349|ref|YP_005919648.1| - 0.074 13.5 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|386001349|ref|YP_005919648.1| - 0.13 12.1 0.0 17 5.1 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_13 PF13166.6 gi|386001349|ref|YP_005919648.1| - 0.14 10.7 0.0 4.6 5.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|386001349|ref|YP_005919648.1| - 0.16 12.1 0.0 1.5 8.9 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.6 gi|386001349|ref|YP_005919648.1| - 0.18 12.1 0.0 0.94 9.7 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|386001349|ref|YP_005919648.1| - 0.19 11.4 0.3 1.5 8.4 0.1 1.9 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.6 gi|386001349|ref|YP_005919648.1| - 0.27 11.5 1.9 0.36 11.1 0.1 2.2 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit CbiQ PF02361.16 gi|386001350|ref|YP_005919649.1| - 4.4e-42 144.2 9.5 5.7e-42 143.8 9.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein CbiN PF02553.15 gi|386001351|ref|YP_005919650.1| - 9.4e-27 92.8 1.4 1.2e-26 92.5 1.4 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN PsbJ PF01788.17 gi|386001351|ref|YP_005919650.1| - 1.7 8.6 6.0 1.1 9.2 0.6 2.4 2 0 0 2 2 2 0 PsbJ CbiM PF01891.16 gi|386001352|ref|YP_005919651.1| - 2.5e-52 177.8 19.2 2.8e-52 177.6 19.2 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF5381 PF17353.2 gi|386001352|ref|YP_005919651.1| - 3.4 7.4 9.5 0.1 12.4 2.2 2.1 2 1 1 3 3 3 0 Family of unknown function (DUF5381) SfsA PF03749.13 gi|386001353|ref|YP_005919652.1| - 1.6e-39 135.0 0.0 1.8e-39 134.8 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain PreAtp-grasp PF18604.1 gi|386001353|ref|YP_005919652.1| - 0.089 12.4 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Pre ATP-grasp domain GCSF PF16647.5 gi|386001353|ref|YP_005919652.1| - 0.17 11.8 0.1 0.22 11.4 0.1 1.2 1 0 0 1 1 1 0 Granulocyte colony-stimulating factor SfsA_N PF17746.1 gi|386001354|ref|YP_005919653.1| - 1.1e-18 67.1 0.0 1.3e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 SfsA N-terminal OB domain Exonuc_VII_L PF02601.15 gi|386001355|ref|YP_005919654.1| - 4.2e-76 256.4 0.0 2.1e-67 227.9 0.2 2.2 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|386001355|ref|YP_005919654.1| - 1.8e-25 89.0 0.0 2.9e-25 88.3 0.0 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|386001355|ref|YP_005919654.1| - 1.3e-06 28.3 0.0 2.7e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain GGDEF_2 PF17853.1 gi|386001355|ref|YP_005919654.1| - 7.5 6.9 9.1 2 8.7 1.1 2.9 2 2 0 2 2 2 0 GGDEF-like domain Exonuc_VII_S PF02609.16 gi|386001356|ref|YP_005919655.1| - 5.2e-20 71.2 3.7 7.4e-20 70.8 3.7 1.3 1 0 0 1 1 1 1 Exonuclease VII small subunit Lipase_GDSL_2 PF13472.6 gi|386001357|ref|YP_005919656.1| - 6.7e-25 88.5 0.0 8.2e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|386001357|ref|YP_005919656.1| - 3.3e-14 53.3 0.0 9.8e-14 51.8 0.0 1.7 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase DUF3965 PF13112.6 gi|386001357|ref|YP_005919656.1| - 0.091 11.9 0.0 2.3 7.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3965) Helicase_C PF00271.31 gi|386001359|ref|YP_005919658.1| - 5.6e-19 68.5 0.0 1.6e-18 67.1 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF3883 PF13020.6 gi|386001359|ref|YP_005919658.1| - 1e-17 63.9 0.1 2.7e-17 62.6 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) SNF2_N PF00176.23 gi|386001359|ref|YP_005919658.1| - 5.2e-16 58.3 0.0 9.8e-16 57.4 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|386001359|ref|YP_005919658.1| - 4.5e-10 39.8 0.0 8.3e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|386001359|ref|YP_005919658.1| - 2.8e-05 24.0 0.0 5.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|386001359|ref|YP_005919658.1| - 0.00061 19.1 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|386001359|ref|YP_005919658.1| - 0.003 18.0 0.0 0.082 13.3 0.0 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_34 PF13872.6 gi|386001359|ref|YP_005919658.1| - 0.013 14.4 0.0 0.14 11.0 0.0 2.1 1 1 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 Helicase_RecD PF05127.14 gi|386001359|ref|YP_005919658.1| - 0.041 13.7 0.0 0.12 12.2 0.0 1.8 1 0 0 1 1 1 0 Helicase AAA_30 PF13604.6 gi|386001359|ref|YP_005919658.1| - 0.051 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Histone_HNS PF00816.21 gi|386001359|ref|YP_005919658.1| - 0.25 12.2 2.0 1.6 9.6 2.0 2.5 1 1 0 1 1 1 0 H-NS histone family HATPase_c_4 PF13749.6 gi|386001360|ref|YP_005919659.1| - 7.7e-17 61.2 0.0 1.8e-16 60.0 0.0 1.7 1 0 0 1 1 1 1 Putative ATP-dependent DNA helicase recG C-terminal AlbA_2 PF04326.14 gi|386001360|ref|YP_005919659.1| - 6.4e-15 55.6 0.0 1.2e-14 54.7 0.0 1.4 1 0 0 1 1 1 1 Putative DNA-binding domain HTH_42 PF06224.12 gi|386001360|ref|YP_005919659.1| - 0.00042 20.0 0.2 0.00087 18.9 0.2 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|386001360|ref|YP_005919659.1| - 0.027 14.4 0.2 0.15 12.0 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|386001360|ref|YP_005919659.1| - 0.039 13.5 0.0 0.15 11.7 0.0 2.1 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TPR_12 PF13424.6 gi|386001360|ref|YP_005919659.1| - 0.074 13.4 0.2 0.19 12.1 0.2 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat HTH_Crp_2 PF13545.6 gi|386001360|ref|YP_005919659.1| - 0.49 10.4 2.3 11 6.0 0.0 3.6 4 0 0 4 4 4 0 Crp-like helix-turn-helix domain DUF1156 PF06634.12 gi|386001361|ref|YP_005919660.1| - 4.7e-23 81.1 1.3 1.1e-22 79.9 1.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) MethyltransfD12 PF02086.15 gi|386001361|ref|YP_005919660.1| - 0.00017 21.3 0.0 0.0065 16.2 0.0 2.1 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase UPF0020 PF01170.18 gi|386001361|ref|YP_005919660.1| - 0.062 13.0 0.0 0.51 10.0 0.0 2.2 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 FdhE PF04216.12 gi|386001361|ref|YP_005919660.1| - 0.081 12.8 0.1 2.9 7.7 0.1 2.7 3 0 0 3 3 3 0 Protein involved in formate dehydrogenase formation Cons_hypoth95 PF03602.15 gi|386001361|ref|YP_005919660.1| - 0.087 12.5 0.3 2 8.1 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Zn_Tnp_IS1595 PF12760.7 gi|386001361|ref|YP_005919660.1| - 7.3 6.7 5.5 30 4.7 0.1 2.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain HicB_lk_antitox PF15919.5 gi|386001363|ref|YP_005919662.1| - 7.8e-17 61.5 0.0 8.5e-17 61.4 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Jag_N PF14804.6 gi|386001363|ref|YP_005919662.1| - 0.056 13.8 0.1 1.4 9.3 0.0 2.2 2 0 0 2 2 2 0 Jag N-terminus DUF499 PF04465.12 gi|386001364|ref|YP_005919663.1| - 1.4e-21 76.1 0.0 2e-19 69.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF499) BcsB PF03170.13 gi|386001364|ref|YP_005919663.1| - 0.041 12.3 0.0 0.073 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial cellulose synthase subunit Ribosomal_S24e PF01282.19 gi|386001364|ref|YP_005919663.1| - 0.062 13.2 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S24e Big_1 PF02369.16 gi|386001364|ref|YP_005919663.1| - 0.071 13.1 0.8 0.17 11.9 0.8 1.6 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) HicB_lk_antitox PF15919.5 gi|386001365|ref|YP_005919664.1| - 9.5e-10 38.7 0.0 1e-09 38.5 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RDD PF06271.12 gi|386001366|ref|YP_005919665.1| - 7.4e-17 61.9 4.0 9.1e-17 61.6 4.0 1.1 1 0 0 1 1 1 1 RDD family Hist_deacetyl PF00850.19 gi|386001367|ref|YP_005919666.1| - 1.6e-63 215.1 0.1 2.7e-63 214.3 0.1 1.3 1 1 0 1 1 1 1 Histone deacetylase domain Evr1_Alr PF04777.13 gi|386001367|ref|YP_005919666.1| - 0.02 15.4 0.1 0.038 14.5 0.1 1.3 1 0 0 1 1 1 0 Erv1 / Alr family Hydantoinase_A PF01968.18 gi|386001368|ref|YP_005919667.1| - 3.5e-47 161.1 16.6 3e-45 154.7 4.0 2.9 3 1 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|386001368|ref|YP_005919667.1| - 3.5e-30 105.0 7.5 5.6e-27 94.6 4.9 3.3 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|386001368|ref|YP_005919667.1| - 1.2e-06 28.2 0.0 0.00013 21.6 0.0 3.0 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.6 gi|386001368|ref|YP_005919667.1| - 5.5e-06 25.2 1.8 0.012 14.3 0.3 2.3 2 0 0 2 2 2 2 MutL protein FtsA PF14450.6 gi|386001368|ref|YP_005919667.1| - 0.00027 21.3 6.7 0.037 14.5 0.5 3.2 3 1 0 3 3 3 2 Cell division protein FtsA ROK PF00480.20 gi|386001368|ref|YP_005919667.1| - 0.0026 17.3 0.7 0.0076 15.8 0.1 2.1 2 0 0 2 2 2 1 ROK family DEDD_Tnp_IS110 PF01548.17 gi|386001368|ref|YP_005919667.1| - 0.01 15.7 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Transposase Ppx-GppA PF02541.16 gi|386001368|ref|YP_005919667.1| - 0.014 14.9 2.9 0.24 10.8 0.1 2.7 3 0 0 3 3 3 0 Ppx/GppA phosphatase family EutA PF06277.11 gi|386001368|ref|YP_005919667.1| - 0.03 13.2 1.3 1.1 8.0 0.2 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutA MreB_Mbl PF06723.13 gi|386001368|ref|YP_005919667.1| - 0.15 10.8 7.7 0.38 9.5 0.4 2.9 3 0 0 3 3 3 0 MreB/Mbl protein StbA PF06406.11 gi|386001368|ref|YP_005919667.1| - 0.3 10.3 2.2 2.6 7.2 0.2 2.2 2 0 0 2 2 2 0 StbA protein TetR_C_14 PF17754.1 gi|386001368|ref|YP_005919667.1| - 1.1 9.2 5.8 1.1 9.2 0.4 2.8 3 0 0 3 3 3 0 MftR C-terminal domain Fasciclin PF02469.22 gi|386001369|ref|YP_005919668.1| - 4.5e-33 114.2 0.0 5.9e-33 113.8 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain SOUL PF04832.12 gi|386001370|ref|YP_005919669.1| - 2.6e-44 151.3 0.0 3.1e-44 151.1 0.0 1.1 1 0 0 1 1 1 1 SOUL heme-binding protein GyrI-like PF06445.15 gi|386001370|ref|YP_005919669.1| - 0.14 12.5 0.0 0.19 12.0 0.0 1.3 1 1 0 1 1 1 0 GyrI-like small molecule binding domain TctB PF07331.11 gi|386001371|ref|YP_005919670.1| - 0.011 16.0 1.2 0.022 15.0 1.2 1.6 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Peptidase_M54 PF07998.11 gi|386001373|ref|YP_005919672.1| - 2.2e-22 80.0 0.0 2.8e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Metallopep PF12044.8 gi|386001373|ref|YP_005919672.1| - 0.0018 16.9 0.2 0.0023 16.6 0.2 1.1 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M10 PF00413.24 gi|386001373|ref|YP_005919672.1| - 0.0023 17.8 0.0 0.0032 17.3 0.0 1.1 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.9 gi|386001373|ref|YP_005919672.1| - 0.018 14.0 0.0 0.024 13.6 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_3 PF13582.6 gi|386001373|ref|YP_005919672.1| - 0.069 13.7 0.0 0.088 13.3 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|386001373|ref|YP_005919672.1| - 0.13 12.3 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 TPR_2 PF07719.17 gi|386001374|ref|YP_005919673.1| - 5.4e-25 85.5 4.1 3.1e-09 36.2 0.2 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|386001374|ref|YP_005919673.1| - 3.8e-24 83.5 0.8 4.7e-08 32.5 0.1 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386001374|ref|YP_005919673.1| - 1.5e-18 65.4 0.1 9.6e-05 22.3 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386001374|ref|YP_005919673.1| - 2.1e-15 57.1 7.8 3.6e-10 40.3 0.6 2.4 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386001374|ref|YP_005919673.1| - 1.8e-14 53.8 9.9 1.6e-08 34.7 1.1 3.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386001374|ref|YP_005919673.1| - 9e-14 50.9 0.5 2.6e-09 36.6 0.1 2.7 1 1 2 3 3 3 2 TPR repeat TPR_17 PF13431.6 gi|386001374|ref|YP_005919673.1| - 6.6e-12 45.0 0.2 0.0031 17.8 0.1 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001374|ref|YP_005919673.1| - 1.4e-11 44.3 3.5 8.9e-09 35.4 1.1 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386001374|ref|YP_005919673.1| - 2.4e-09 36.8 8.1 0.0091 15.8 0.3 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001374|ref|YP_005919673.1| - 5.4e-09 36.1 13.4 0.0023 18.6 0.1 3.8 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001374|ref|YP_005919673.1| - 1.3e-07 31.1 3.6 0.19 11.8 0.1 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386001374|ref|YP_005919673.1| - 2.6e-07 31.0 2.4 4.6e-05 23.9 0.3 2.4 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386001374|ref|YP_005919673.1| - 3.4e-07 30.5 2.7 0.081 13.6 0.0 3.6 4 0 0 4 4 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386001374|ref|YP_005919673.1| - 2.3e-06 27.7 6.4 0.0013 18.9 0.6 2.1 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_3 PF07720.12 gi|386001374|ref|YP_005919673.1| - 2.9e-05 23.9 0.0 0.37 10.8 0.0 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|386001374|ref|YP_005919673.1| - 0.00088 19.3 0.3 0.26 11.4 0.0 2.3 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.8 gi|386001374|ref|YP_005919673.1| - 0.0016 17.4 0.0 0.0023 16.9 0.0 1.3 1 1 0 1 1 1 1 NMDA receptor-regulated protein 1 DUF3856 PF12968.7 gi|386001374|ref|YP_005919673.1| - 0.0045 17.1 0.4 0.024 14.7 0.2 2.2 1 1 0 1 1 1 1 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|386001374|ref|YP_005919673.1| - 0.009 16.5 1.0 0.03 14.8 0.7 1.8 1 1 1 2 2 2 1 Bacterial transcriptional activator domain TPR_4 PF07721.14 gi|386001374|ref|YP_005919673.1| - 0.012 16.2 2.3 0.29 11.9 0.3 4.3 4 0 0 4 4 3 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|386001374|ref|YP_005919673.1| - 0.015 15.2 0.7 0.055 13.4 0.1 2.2 1 1 2 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal PPR PF01535.20 gi|386001374|ref|YP_005919673.1| - 0.017 15.4 1.5 8 7.0 0.1 2.9 3 0 0 3 3 3 0 PPR repeat TPR_15 PF13429.6 gi|386001374|ref|YP_005919673.1| - 0.022 14.0 0.1 0.23 10.6 0.2 2.0 1 1 1 2 2 2 0 Tetratricopeptide repeat Cation_efflux PF01545.21 gi|386001375|ref|YP_005919674.1| - 2.6e-43 148.1 6.7 3.1e-43 147.8 6.7 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|386001375|ref|YP_005919674.1| - 4.2e-17 62.1 1.8 6.4e-17 61.5 1.8 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF2104 PF09877.9 gi|386001375|ref|YP_005919674.1| - 0.77 10.0 5.0 1.9 8.8 0.6 2.8 2 1 1 3 3 3 0 Predicted membrane protein (DUF2104) OsmC PF02566.19 gi|386001376|ref|YP_005919675.1| - 5.8e-14 52.4 0.0 7.7e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein PBP PF01161.20 gi|386001377|ref|YP_005919676.1| - 3.9e-29 101.6 0.0 5e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein PEMT PF04191.13 gi|386001378|ref|YP_005919677.1| - 1.7e-05 25.1 1.0 2.3e-05 24.7 0.1 1.7 2 0 0 2 2 2 1 Phospholipid methyltransferase NnrU PF07298.11 gi|386001378|ref|YP_005919677.1| - 0.00049 19.7 4.4 0.00049 19.7 4.4 1.6 1 1 1 2 2 2 1 NnrU protein NnrU PF07298.11 gi|386001379|ref|YP_005919678.1| - 2.7e-09 36.9 6.6 3.6e-09 36.4 6.6 1.1 1 0 0 1 1 1 1 NnrU protein PEMT PF04191.13 gi|386001379|ref|YP_005919678.1| - 0.0025 18.2 1.6 0.0029 18.0 0.1 2.0 2 0 0 2 2 2 1 Phospholipid methyltransferase Neur_chan_LBD PF02931.23 gi|386001380|ref|YP_005919679.1| - 0.0021 17.5 0.6 1.2 8.5 0.0 2.1 2 0 0 2 2 2 2 Neurotransmitter-gated ion-channel ligand binding domain DUF4131 PF13567.6 gi|386001380|ref|YP_005919679.1| - 9.5 5.8 8.5 1 9.0 2.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) CbiK PF06180.11 gi|386001381|ref|YP_005919680.1| - 1.2e-59 201.7 0.0 3.4e-59 200.3 0.0 1.6 1 1 0 1 1 1 1 Cobalt chelatase (CbiK) CbiX PF01903.17 gi|386001381|ref|YP_005919680.1| - 1.4e-06 28.6 0.1 1.3e-05 25.4 0.0 2.4 3 0 0 3 3 3 1 CbiX Imm1 PF14430.6 gi|386001381|ref|YP_005919680.1| - 0.1 13.3 0.3 23 5.7 0.0 2.3 2 1 0 2 2 2 0 Immunity protein Imm1 HMG_CoA_synt_C PF08540.10 gi|386001383|ref|YP_005919682.1| - 2.2e-27 96.4 0.0 3e-27 96.0 0.0 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|386001383|ref|YP_005919682.1| - 8.5e-16 58.3 0.0 2.2e-15 57.0 0.0 1.6 1 1 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III_C PF08541.10 gi|386001383|ref|YP_005919682.1| - 0.03 14.5 0.1 0.1 12.8 0.0 1.8 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal P22_AR_C PF10548.9 gi|386001384|ref|YP_005919683.1| - 0.0072 16.5 0.0 0.0082 16.3 0.0 1.2 1 0 0 1 1 1 1 P22AR C-terminal domain HTH_32 PF13565.6 gi|386001384|ref|YP_005919683.1| - 0.27 11.9 1.2 2.9 8.6 0.3 2.3 1 1 1 2 2 2 0 Homeodomain-like domain Pyridox_ox_2 PF12900.7 gi|386001385|ref|YP_005919684.1| - 9.4e-22 77.5 0.0 1.2e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|386001385|ref|YP_005919684.1| - 5.8e-05 23.2 0.0 7.4e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Glu_synthase PF01645.17 gi|386001386|ref|YP_005919685.1| - 8.6e-13 48.2 0.0 3.2e-10 39.7 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase ELFV_dehydrog PF00208.21 gi|386001387|ref|YP_005919686.1| - 3.8e-73 246.2 0.6 7.5e-73 245.2 0.3 1.6 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|386001387|ref|YP_005919686.1| - 5.4e-55 184.8 0.0 9.9e-55 183.9 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|386001387|ref|YP_005919686.1| - 0.025 13.9 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HTH_28 PF13518.6 gi|386001387|ref|YP_005919686.1| - 0.074 13.2 0.1 0.57 10.4 0.1 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain NUMOD1 PF07453.13 gi|386001387|ref|YP_005919686.1| - 0.1 12.9 0.1 23 5.4 0.0 2.7 2 0 0 2 2 2 0 NUMOD1 domain DHODB_Fe-S_bind PF10418.9 gi|386001390|ref|YP_005919689.1| - 2.4e-12 46.4 3.9 5.7e-12 45.2 3.9 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|386001390|ref|YP_005919689.1| - 0.011 16.1 0.0 0.017 15.5 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase FAD-binding domain Fer2_3 PF13085.6 gi|386001390|ref|YP_005919689.1| - 0.098 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Molybdopterin PF00384.22 gi|386001391|ref|YP_005919690.1| - 1.1e-98 331.0 0.0 1.4e-98 330.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|386001391|ref|YP_005919690.1| - 8.7e-32 109.4 0.2 1.7e-30 105.3 0.0 2.8 3 0 0 3 3 3 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|386001391|ref|YP_005919690.1| - 7e-18 64.5 0.1 2e-17 63.0 0.1 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Molybdop_Fe4S4 PF04879.16 gi|386001391|ref|YP_005919690.1| - 7.6e-16 57.9 0.5 7.6e-16 57.9 0.5 2.6 3 0 0 3 3 2 1 Molybdopterin oxidoreductase Fe4S4 domain NADH-G_4Fe-4S_3 PF10588.9 gi|386001391|ref|YP_005919690.1| - 1e-08 34.6 9.1 0.00034 20.1 0.3 2.9 2 0 0 2 2 2 2 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4 PF00037.27 gi|386001391|ref|YP_005919690.1| - 2.3e-07 30.4 1.2 2.3e-07 30.4 1.2 4.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386001391|ref|YP_005919690.1| - 7.1e-07 29.7 6.8 7.1e-07 29.7 6.8 4.0 3 2 0 3 3 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386001391|ref|YP_005919690.1| - 5.6e-06 26.4 5.1 5.6e-06 26.4 5.1 2.9 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386001391|ref|YP_005919690.1| - 7.8e-05 22.8 8.8 7.8e-05 22.8 8.8 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001391|ref|YP_005919690.1| - 0.00065 19.8 10.3 0.00065 19.8 10.3 3.5 2 2 1 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386001391|ref|YP_005919690.1| - 0.0033 17.4 23.0 0.011 15.8 1.2 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|386001391|ref|YP_005919690.1| - 0.018 16.0 6.0 0.018 16.0 6.0 4.5 6 0 0 6 6 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|386001391|ref|YP_005919690.1| - 0.13 13.0 6.5 7.2 7.4 0.6 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|386001391|ref|YP_005919690.1| - 2.4 8.4 12.8 0.69 10.1 1.5 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386001391|ref|YP_005919690.1| - 4.6 7.9 20.0 1.6 9.3 0.5 3.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001391|ref|YP_005919690.1| - 7.8 6.8 23.3 0.33 11.1 2.5 4.0 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|386001392|ref|YP_005919691.1| - 1e-44 150.9 2.5 1.7e-44 150.2 2.5 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|386001392|ref|YP_005919691.1| - 1.4e-40 139.3 2.6 2.1e-40 138.8 2.6 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|386001392|ref|YP_005919691.1| - 6.8e-13 49.0 4.7 6e-06 26.7 0.3 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|386001392|ref|YP_005919691.1| - 3.3e-11 43.0 0.6 3e-05 23.4 0.2 3.2 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|386001392|ref|YP_005919691.1| - 1.4e-07 31.0 4.8 0.0047 16.3 0.1 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|386001392|ref|YP_005919691.1| - 1.7e-07 31.4 0.4 1.7e-07 31.4 0.4 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|386001392|ref|YP_005919691.1| - 4.4e-06 27.1 2.5 0.0071 16.8 0.2 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|386001392|ref|YP_005919691.1| - 1.4e-05 24.6 7.0 1.8e-05 24.3 0.5 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|386001392|ref|YP_005919691.1| - 5.4e-05 22.5 0.3 5.4e-05 22.5 0.3 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|386001392|ref|YP_005919691.1| - 5.8e-05 22.0 0.9 5.8e-05 22.0 0.9 1.7 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|386001392|ref|YP_005919691.1| - 0.00011 21.5 0.2 0.00011 21.5 0.2 1.7 2 0 0 2 2 2 1 Thi4 family 2-Hacid_dh_C PF02826.19 gi|386001392|ref|YP_005919691.1| - 0.00014 21.3 0.0 0.45 9.9 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.19 gi|386001392|ref|YP_005919691.1| - 0.00028 19.8 0.1 0.0059 15.4 0.0 2.3 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase FAD_binding_3 PF01494.19 gi|386001392|ref|YP_005919691.1| - 0.00028 20.2 1.8 0.00094 18.5 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|386001392|ref|YP_005919691.1| - 0.00037 19.7 1.9 0.00037 19.7 1.9 2.8 2 1 1 3 3 3 1 FAD binding domain K_oxygenase PF13434.6 gi|386001392|ref|YP_005919691.1| - 0.00049 19.3 0.0 0.51 9.4 0.0 2.8 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) ELFV_dehydrog PF00208.21 gi|386001392|ref|YP_005919691.1| - 0.0013 18.6 0.1 0.46 10.2 0.0 2.2 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DAO PF01266.24 gi|386001392|ref|YP_005919691.1| - 0.0016 18.1 1.9 0.0016 18.1 1.9 3.2 4 0 0 4 4 4 1 FAD dependent oxidoreductase FMO-like PF00743.19 gi|386001392|ref|YP_005919691.1| - 0.0028 16.2 0.0 1.7 6.9 0.0 2.3 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.6 gi|386001392|ref|YP_005919691.1| - 0.0039 17.2 2.5 0.095 12.7 0.6 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|386001392|ref|YP_005919691.1| - 0.0047 16.3 0.3 0.0047 16.3 0.3 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase XdhC_C PF13478.6 gi|386001392|ref|YP_005919691.1| - 0.0057 17.2 0.4 0.56 10.7 0.0 2.7 2 0 0 2 2 2 1 XdhC Rossmann domain Shikimate_DH PF01488.20 gi|386001392|ref|YP_005919691.1| - 0.0061 16.6 0.7 2.7 8.0 0.1 2.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Rossmann-like PF10727.9 gi|386001392|ref|YP_005919691.1| - 0.0072 16.2 0.3 0.28 11.0 0.1 2.6 2 0 0 2 2 2 1 Rossmann-like domain Fer4_7 PF12838.7 gi|386001392|ref|YP_005919691.1| - 0.0074 16.9 0.4 0.0074 16.9 0.4 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain 3HCDH_N PF02737.18 gi|386001392|ref|YP_005919691.1| - 0.0095 15.8 3.1 0.33 10.8 1.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|386001392|ref|YP_005919691.1| - 0.011 16.3 0.5 1.9 9.1 0.0 3.0 3 0 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent PALP PF00291.25 gi|386001392|ref|YP_005919691.1| - 0.015 14.7 1.6 1.7 8.0 0.0 2.6 2 1 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme Fer4_18 PF13746.6 gi|386001392|ref|YP_005919691.1| - 0.021 15.0 0.7 0.021 15.0 0.7 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain ThiF PF00899.21 gi|386001392|ref|YP_005919691.1| - 0.021 14.2 0.0 0.51 9.7 0.0 2.3 2 0 0 2 2 2 0 ThiF family AdoHcyase_NAD PF00670.21 gi|386001392|ref|YP_005919691.1| - 0.046 13.8 0.0 0.55 10.3 0.0 2.3 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain YjeF_N PF03853.15 gi|386001392|ref|YP_005919691.1| - 0.053 13.4 0.1 3.3 7.6 0.1 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus DUF4147 PF13660.6 gi|386001392|ref|YP_005919691.1| - 0.092 12.3 0.1 13 5.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4147) Lycopene_cycl PF05834.12 gi|386001392|ref|YP_005919691.1| - 0.094 11.7 0.5 0.17 10.9 0.5 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|386001392|ref|YP_005919691.1| - 0.098 12.2 3.0 0.25 10.9 0.1 2.6 2 1 1 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|386001392|ref|YP_005919691.1| - 0.12 11.2 3.4 0.075 11.9 0.6 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Fer4_10 PF13237.6 gi|386001392|ref|YP_005919691.1| - 0.16 12.1 9.4 0.45 10.7 9.4 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain MAF_flag10 PF01973.18 gi|386001392|ref|YP_005919691.1| - 0.17 11.6 0.0 4.2 7.0 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function DUF115 Fer4_8 PF13183.6 gi|386001392|ref|YP_005919691.1| - 0.3 11.6 7.2 0.21 12.1 2.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386001392|ref|YP_005919691.1| - 1.3 9.7 8.6 0.18 12.4 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001392|ref|YP_005919691.1| - 4.3 7.7 8.7 1 9.6 3.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Form_Nir_trans PF01226.17 gi|386001393|ref|YP_005919692.1| - 5.6e-87 291.0 28.2 6.2e-87 290.8 28.2 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter ATC_hydrolase PF14196.6 gi|386001394|ref|YP_005919693.1| - 0.00059 20.6 5.4 0.00093 20.0 5.4 1.3 1 1 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase DUF1065 PF06358.11 gi|386001394|ref|YP_005919693.1| - 0.019 14.9 0.2 0.023 14.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1065) MetOD1 PF18546.1 gi|386001394|ref|YP_005919693.1| - 0.02 14.9 1.4 0.33 10.9 2.2 1.9 1 1 1 2 2 2 0 Metanogen output domain 1 DUF45 PF01863.17 gi|386001395|ref|YP_005919694.1| - 1.1e-19 71.3 0.0 7e-18 65.4 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function DUF45 SprT-like PF10263.9 gi|386001395|ref|YP_005919694.1| - 0.012 15.4 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 SprT-like family WLM PF08325.10 gi|386001395|ref|YP_005919694.1| - 0.033 14.3 0.0 0.057 13.5 0.0 1.3 1 0 0 1 1 1 0 WLM domain Reprolysin_5 PF13688.6 gi|386001395|ref|YP_005919694.1| - 0.16 12.1 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 TOBE PF03459.17 gi|386001396|ref|YP_005919695.1| - 3.7e-17 62.4 2.1 4.1e-17 62.2 2.1 1.0 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.10 gi|386001396|ref|YP_005919695.1| - 0.00014 22.0 0.4 0.00016 21.8 0.4 1.1 1 0 0 1 1 1 1 TOBE domain Beta-Casp PF10996.8 gi|386001397|ref|YP_005919696.1| - 1.6e-27 95.9 0.0 3e-27 95.1 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|386001397|ref|YP_005919696.1| - 7.5e-16 57.8 0.0 1.7e-15 56.6 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|386001397|ref|YP_005919696.1| - 2.4e-08 34.2 2.6 3.4e-07 30.5 2.6 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|386001397|ref|YP_005919696.1| - 6.5e-06 25.8 0.1 2.1e-05 24.2 0.1 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|386001397|ref|YP_005919696.1| - 0.00049 19.6 0.0 0.00086 18.8 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Aminotran_1_2 PF00155.21 gi|386001398|ref|YP_005919697.1| - 1.2e-61 208.9 0.0 1.4e-61 208.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|386001398|ref|YP_005919697.1| - 4.1e-09 36.2 0.0 6.6e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|386001398|ref|YP_005919697.1| - 4.1e-08 32.6 0.0 6.5e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|386001398|ref|YP_005919697.1| - 1.2e-05 24.0 0.0 1.8e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|386001398|ref|YP_005919697.1| - 0.0039 16.5 0.4 0.0061 15.9 0.4 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Alliinase_C PF04864.13 gi|386001398|ref|YP_005919697.1| - 0.0059 15.5 0.0 0.071 12.0 0.0 2.0 1 1 0 2 2 2 1 Allinase NIR_SIR_ferr PF03460.17 gi|386001398|ref|YP_005919697.1| - 0.041 13.7 0.0 0.099 12.5 0.0 1.7 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain EFP_N PF08207.12 gi|386001399|ref|YP_005919698.1| - 2.9e-05 24.0 0.0 4.5e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain DUF3945 PF13101.6 gi|386001399|ref|YP_005919698.1| - 0.059 13.1 0.1 0.59 9.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3945) Arginase PF00491.21 gi|386001400|ref|YP_005919699.1| - 2.8e-73 246.8 0.0 3.2e-73 246.7 0.0 1.0 1 0 0 1 1 1 1 Arginase family PIN PF01850.21 gi|386001401|ref|YP_005919700.1| - 1.5e-13 51.3 0.0 1.8e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 PIN domain Transketolase_N PF00456.21 gi|386001402|ref|YP_005919701.1| - 0.11 11.4 0.1 0.18 10.7 0.1 1.2 1 0 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain Mrr_cat PF04471.12 gi|386001403|ref|YP_005919702.1| - 2.8e-37 127.2 0.0 5.6e-37 126.3 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease Mrr_N PF14338.6 gi|386001403|ref|YP_005919702.1| - 3.7e-33 113.5 0.0 6.7e-33 112.7 0.0 1.5 1 0 0 1 1 1 1 Mrr N-terminal domain Mrr_cat_2 PF13156.6 gi|386001403|ref|YP_005919702.1| - 2e-10 40.7 0.1 8e-10 38.7 0.0 1.8 2 0 0 2 2 2 1 Restriction endonuclease PDDEXK_1 PF12705.7 gi|386001404|ref|YP_005919703.1| - 3.7e-13 50.0 0.1 5e-13 49.6 0.1 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|386001404|ref|YP_005919703.1| - 0.00021 21.4 0.0 0.00028 21.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 UvrD-helicase PF00580.21 gi|386001405|ref|YP_005919704.1| - 1.4e-47 162.7 0.0 1.2e-23 84.2 0.0 2.1 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|386001405|ref|YP_005919704.1| - 4e-31 108.7 0.0 2.3e-19 70.0 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|386001405|ref|YP_005919704.1| - 3.8e-20 72.7 0.0 9e-20 71.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 gi|386001405|ref|YP_005919704.1| - 8.1e-11 41.6 0.6 1.1e-05 25.1 0.0 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|386001405|ref|YP_005919704.1| - 8.6e-07 28.9 0.1 0.053 13.2 0.1 2.7 3 0 0 3 3 3 2 AAA domain AAA_12 PF13087.6 gi|386001405|ref|YP_005919704.1| - 0.00096 18.8 0.0 5.2 6.6 0.0 3.3 3 1 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.18 gi|386001405|ref|YP_005919704.1| - 0.0015 18.3 0.4 17 5.0 0.1 4.0 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|386001405|ref|YP_005919704.1| - 0.0032 16.9 0.1 0.33 10.4 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein PDDEXK_1 PF12705.7 gi|386001406|ref|YP_005919705.1| - 2.4e-26 93.2 0.0 4.7e-26 92.2 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily KfrA_N PF11740.8 gi|386001406|ref|YP_005919705.1| - 2.8 8.7 9.5 1.3 9.8 5.1 2.6 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term DinB_2 PF12867.7 gi|386001407|ref|YP_005919706.1| - 0.37 11.3 1.6 8.9 6.8 0.1 2.3 2 0 0 2 2 2 0 DinB superfamily Peptidase_C25 PF01364.18 gi|386001408|ref|YP_005919707.1| - 4.6e-54 184.0 0.0 7.8e-54 183.3 0.0 1.4 1 1 0 1 1 1 1 Peptidase family C25 zinc_ribbon_5 PF13719.6 gi|386001408|ref|YP_005919707.1| - 0.00067 19.4 1.5 0.35 10.7 0.2 2.8 2 0 0 2 2 2 2 zinc-ribbon domain MarC PF01914.17 gi|386001410|ref|YP_005919709.1| - 2.8e-56 190.2 9.2 3.1e-56 190.0 9.2 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.16 gi|386001410|ref|YP_005919709.1| - 0.038 13.7 10.3 0.25 11.0 9.6 2.2 1 1 0 1 1 1 0 Integral membrane protein TerC family RseC_MucC PF04246.12 gi|386001410|ref|YP_005919709.1| - 7.7 6.5 11.6 0.3 11.0 0.3 2.9 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC CCG PF02754.16 gi|386001411|ref|YP_005919710.1| - 7.2e-29 99.8 4.9 2.4e-14 53.3 0.1 2.8 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|386001411|ref|YP_005919710.1| - 1.8e-10 41.1 4.5 1.8e-10 41.1 4.5 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386001411|ref|YP_005919710.1| - 4.7e-10 39.8 3.3 4.7e-10 39.8 3.3 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386001411|ref|YP_005919710.1| - 5.3e-07 30.1 9.2 6e-07 30.0 7.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001411|ref|YP_005919710.1| - 1.5e-06 28.2 22.4 4.8e-06 26.6 11.7 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386001411|ref|YP_005919710.1| - 7.8e-06 25.5 17.2 0.013 15.2 4.6 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386001411|ref|YP_005919710.1| - 9.1e-06 26.5 10.1 0.0001 23.2 8.7 2.9 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|386001411|ref|YP_005919710.1| - 1.3e-05 25.3 20.2 2e-05 24.7 9.9 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001411|ref|YP_005919710.1| - 7.5e-05 22.6 20.9 0.00022 21.1 3.2 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|386001411|ref|YP_005919710.1| - 0.0023 18.3 1.2 0.0023 18.3 1.2 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386001411|ref|YP_005919710.1| - 0.015 15.3 14.7 0.19 11.8 3.7 3.0 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|386001411|ref|YP_005919710.1| - 0.042 14.0 5.9 3 8.1 1.6 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386001411|ref|YP_005919710.1| - 0.1 12.8 0.6 0.1 12.8 0.6 3.7 4 0 0 4 4 4 0 4Fe-4S dicluster domain FAD-oxidase_C PF02913.19 gi|386001412|ref|YP_005919711.1| - 4.9e-57 193.4 0.2 6.2e-57 193.1 0.2 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|386001412|ref|YP_005919711.1| - 2.8e-43 147.0 2.1 2.8e-43 147.0 2.1 1.9 2 0 0 2 2 2 1 FAD binding domain Eco57I PF07669.11 gi|386001413|ref|YP_005919712.1| - 7.4e-20 71.4 0.0 2.7e-19 69.6 0.0 2.0 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.16 gi|386001413|ref|YP_005919712.1| - 3.3e-19 69.3 4.0 8.5e-09 35.1 0.0 3.6 4 1 0 4 4 4 2 N-6 DNA Methylase TaqI_C PF12950.7 gi|386001413|ref|YP_005919712.1| - 3.8e-13 49.5 0.1 1.3e-12 47.9 0.0 2.0 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain HSDR_N_2 PF13588.6 gi|386001413|ref|YP_005919712.1| - 0.00018 21.4 0.0 0.00073 19.5 0.0 2.0 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.18 gi|386001413|ref|YP_005919712.1| - 0.00026 20.7 0.0 0.045 13.4 0.0 2.9 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 HSDR_N PF04313.14 gi|386001413|ref|YP_005919712.1| - 0.0015 18.5 0.0 0.27 11.2 0.0 2.6 1 1 1 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) Methyltransf_31 PF13847.6 gi|386001413|ref|YP_005919712.1| - 0.068 13.0 0.0 1 9.2 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Acyl_transf_3 PF01757.22 gi|386001414|ref|YP_005919713.1| - 4e-24 85.3 39.6 2.9e-23 82.5 39.6 1.9 1 1 0 1 1 1 1 Acyltransferase family Diphthami_syn_2 PF01902.17 gi|386001415|ref|YP_005919714.1| - 2.6e-44 151.3 0.0 3.1e-44 151.1 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase ThiI PF02568.14 gi|386001415|ref|YP_005919714.1| - 0.031 13.9 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) HTH_27 PF13463.6 gi|386001416|ref|YP_005919715.1| - 4.1e-06 27.2 0.0 7.7e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|386001416|ref|YP_005919715.1| - 0.0014 18.5 0.0 0.01 15.7 0.0 2.2 1 1 1 2 2 2 1 MarR family TrmB PF01978.19 gi|386001416|ref|YP_005919715.1| - 0.046 13.6 0.1 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|386001416|ref|YP_005919715.1| - 0.097 12.8 5.0 0.16 12.1 0.0 2.9 2 1 1 3 3 3 0 Helix-turn-helix domain ALF PF03752.13 gi|386001416|ref|YP_005919715.1| - 0.16 12.0 0.5 0.16 12.0 0.5 2.7 2 0 0 2 2 2 0 Short repeats of unknown function SAICAR_synt PF01259.18 gi|386001418|ref|YP_005919717.1| - 1.2e-36 126.6 0.0 2.8e-36 125.4 0.0 1.5 1 1 0 1 1 1 1 SAICAR synthetase EFF-AFF PF14884.6 gi|386001419|ref|YP_005919718.1| - 0.34 9.0 0.0 0.42 8.7 0.0 1.0 1 0 0 1 1 1 0 Type I membrane glycoproteins cell-cell fusogen EF_assoc_1 PF08355.12 gi|386001421|ref|YP_005919720.1| - 0.14 11.8 0.2 0.28 10.8 0.0 1.6 2 0 0 2 2 2 0 EF hand associated Radical_SAM PF04055.21 gi|386001422|ref|YP_005919721.1| - 8.9e-15 55.5 0.0 1.5e-14 54.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|386001422|ref|YP_005919721.1| - 4.6e-09 36.7 0.0 9.3e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|386001422|ref|YP_005919721.1| - 0.082 13.2 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain polyprenyl_synt PF00348.17 gi|386001423|ref|YP_005919722.1| - 2.9e-45 154.3 0.0 3.4e-45 154.1 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Laminin_B PF00052.18 gi|386001424|ref|YP_005919723.1| - 3.1e-12 46.6 0.0 4.6e-07 29.8 0.0 2.9 3 0 0 3 3 3 2 Laminin B (Domain IV) PPC PF04151.15 gi|386001425|ref|YP_005919724.1| - 4.8e-19 69.2 2.4 4.4e-05 24.5 0.0 4.8 4 0 0 4 4 4 4 Bacterial pre-peptidase C-terminal domain G8 PF10162.9 gi|386001425|ref|YP_005919724.1| - 0.0016 18.5 0.0 13 5.8 0.0 4.0 4 0 0 4 4 4 2 G8 domain CDC48_2 PF02933.17 gi|386001425|ref|YP_005919724.1| - 0.017 14.9 0.1 3.7 7.4 0.0 3.1 3 0 0 3 3 3 0 Cell division protein 48 (CDC48), domain 2 BiPBP_C PF06832.12 gi|386001425|ref|YP_005919724.1| - 0.025 14.6 0.0 20 5.3 0.0 3.3 3 0 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family U62_UL91 PF17442.2 gi|386001425|ref|YP_005919724.1| - 0.063 13.3 0.0 74 3.4 0.0 3.6 4 0 0 4 4 4 0 Functional domain of U62 and UL91 proteins AAT PF03417.16 gi|386001426|ref|YP_005919725.1| - 4.5e-63 213.0 0.0 5.6e-63 212.6 0.0 1.1 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase Abhydrolase_1 PF00561.20 gi|386001427|ref|YP_005919726.1| - 6.9e-29 101.3 0.0 1.8e-27 96.6 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|386001427|ref|YP_005919726.1| - 1.7e-21 77.9 5.3 1.7e-21 77.9 5.3 1.5 2 0 0 2 2 2 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|386001427|ref|YP_005919726.1| - 1.5e-19 70.3 0.0 2e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|386001427|ref|YP_005919726.1| - 2.9e-06 27.6 0.0 5.1e-06 26.8 0.0 1.7 1 1 0 1 1 1 1 Thioesterase domain Ndr PF03096.14 gi|386001427|ref|YP_005919726.1| - 0.0017 17.2 0.0 0.0021 16.8 0.0 1.3 1 1 0 1 1 1 1 Ndr family Esterase PF00756.20 gi|386001427|ref|YP_005919726.1| - 0.014 15.1 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Abhydrolase_4 PF08386.10 gi|386001427|ref|YP_005919726.1| - 0.018 15.1 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Peptidase_S9 PF00326.21 gi|386001427|ref|YP_005919726.1| - 0.045 13.2 0.0 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 gi|386001427|ref|YP_005919726.1| - 0.086 12.7 0.1 0.19 11.5 0.1 1.6 1 1 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 gi|386001427|ref|YP_005919726.1| - 0.092 12.5 0.0 2.4 7.9 0.0 2.1 2 0 0 2 2 2 0 Alpha/beta hydrolase family DUF2048 PF09752.9 gi|386001427|ref|YP_005919726.1| - 0.14 11.2 0.0 7.4 5.6 0.1 2.1 2 0 0 2 2 2 0 Abhydrolase domain containing 18 Peptidase_C25 PF01364.18 gi|386001428|ref|YP_005919727.1| - 5.8e-40 137.6 1.4 7e-40 137.4 1.4 1.1 1 0 0 1 1 1 1 Peptidase family C25 Propeptide_C25 PF08126.11 gi|386001428|ref|YP_005919727.1| - 3.9e-11 42.4 0.0 7.7e-11 41.5 0.0 1.5 1 0 0 1 1 1 1 Propeptide_C25 P-II PF00543.22 gi|386001429|ref|YP_005919728.1| - 4e-37 126.9 0.8 4.4e-37 126.8 0.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II P19Arf_N PF07392.12 gi|386001429|ref|YP_005919728.1| - 0.04 14.4 1.0 0.073 13.5 1.0 1.4 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus Ammonium_transp PF00909.21 gi|386001430|ref|YP_005919729.1| - 1e-129 432.7 41.3 1.2e-129 432.6 41.3 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family RHH_1 PF01402.21 gi|386001431|ref|YP_005919730.1| - 0.01 15.7 0.0 0.024 14.6 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family MFS_MOT1 PF16983.5 gi|386001433|ref|YP_005919732.1| - 9e-48 161.3 25.7 1.2e-28 99.7 9.5 3.4 4 0 0 4 4 4 2 Molybdate transporter of MFS superfamily Sulfate_transp PF00916.20 gi|386001433|ref|YP_005919732.1| - 1.4e-08 33.9 2.7 1.4e-08 33.9 2.7 2.3 1 1 0 2 2 2 1 Sulfate permease family Xan_ur_permease PF00860.20 gi|386001433|ref|YP_005919732.1| - 0.0017 17.1 20.7 0.039 12.6 6.3 2.4 2 0 0 2 2 2 2 Permease family GATase PF00117.28 gi|386001434|ref|YP_005919733.1| - 9.5e-15 54.9 0.0 1.2e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|386001434|ref|YP_005919733.1| - 3e-05 23.9 0.2 0.00011 22.0 0.2 1.9 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|386001434|ref|YP_005919733.1| - 0.028 14.2 0.0 0.041 13.7 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family GATase_3 PF07685.14 gi|386001434|ref|YP_005919733.1| - 0.092 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HTS PF04204.16 gi|386001434|ref|YP_005919733.1| - 0.14 11.1 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Homoserine O-succinyltransferase YEATS PF03366.16 gi|386001435|ref|YP_005919734.1| - 1.8e-07 31.1 0.0 4.1e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 YEATS family RHS_repeat PF05593.14 gi|386001435|ref|YP_005919734.1| - 0.067 13.7 1.1 7 7.3 0.0 3.3 3 0 0 3 3 3 0 RHS Repeat Laminin_G_3 PF13385.6 gi|386001436|ref|YP_005919735.1| - 3.7e-19 69.4 1.1 7.9e-19 68.3 1.1 1.5 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily TPR_1 PF00515.28 gi|386001437|ref|YP_005919736.1| - 1.1e-61 202.3 5.4 6.6e-10 38.4 0.2 8.5 8 0 0 8 8 8 7 Tetratricopeptide repeat HEAT_2 PF13646.6 gi|386001437|ref|YP_005919736.1| - 2.4e-53 178.5 22.6 1.7e-23 82.8 3.0 5.2 2 1 3 5 5 5 4 HEAT repeats TPR_11 PF13414.6 gi|386001437|ref|YP_005919736.1| - 2.5e-53 177.5 15.2 3.3e-09 36.3 0.9 7.5 1 1 6 7 7 7 7 TPR repeat TPR_2 PF07719.17 gi|386001437|ref|YP_005919736.1| - 9.5e-50 162.8 14.0 2.6e-07 30.2 0.3 9.0 9 0 0 9 9 8 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386001437|ref|YP_005919736.1| - 1e-49 166.9 37.7 9.7e-11 42.1 0.9 8.2 4 3 7 11 11 8 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386001437|ref|YP_005919736.1| - 4.3e-40 132.6 3.6 2.8e-05 24.0 0.1 8.4 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386001437|ref|YP_005919736.1| - 3.6e-38 127.2 1.5 3.3e-05 24.0 0.0 8.1 8 0 0 8 8 7 6 Tetratricopeptide repeat HEAT_PBS PF03130.16 gi|386001437|ref|YP_005919736.1| - 2e-32 108.5 47.3 1.9e-06 28.0 0.6 9.2 9 0 0 9 9 8 7 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|386001437|ref|YP_005919736.1| - 3e-22 76.8 3.3 0.0024 18.0 0.0 8.2 8 0 0 8 8 8 3 HEAT repeat TPR_19 PF14559.6 gi|386001437|ref|YP_005919736.1| - 2e-21 76.2 25.2 1.2e-05 25.7 0.3 7.1 5 2 2 8 8 8 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001437|ref|YP_005919736.1| - 6e-21 73.3 41.6 0.00075 20.1 0.1 11.8 2 2 12 14 14 13 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001437|ref|YP_005919736.1| - 1.6e-18 66.6 26.4 1.4e-05 25.1 0.0 7.2 3 1 5 8 8 7 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386001437|ref|YP_005919736.1| - 6.9e-18 64.7 12.7 8e-06 26.1 0.4 6.6 2 1 4 6 6 5 5 Tetratricopeptide repeat Arm PF00514.23 gi|386001437|ref|YP_005919736.1| - 1e-17 63.5 2.5 3.5e-05 23.7 0.0 6.4 3 2 4 7 7 6 3 Armadillo/beta-catenin-like repeat TPR_7 PF13176.6 gi|386001437|ref|YP_005919736.1| - 3.5e-17 61.1 7.1 0.022 14.7 0.0 7.4 8 0 0 8 8 8 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386001437|ref|YP_005919736.1| - 3.4e-16 58.7 8.1 0.041 14.5 0.0 8.6 8 1 0 8 8 7 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386001437|ref|YP_005919736.1| - 1.6e-12 46.9 21.9 0.028 14.3 0.3 8.5 8 0 0 8 8 8 3 Tetratricopeptide repeat HEAT_EZ PF13513.6 gi|386001437|ref|YP_005919736.1| - 4.2e-12 46.3 24.1 0.0075 16.8 3.4 7.7 7 2 1 8 8 7 3 HEAT-like repeat TPR_3 PF07720.12 gi|386001437|ref|YP_005919736.1| - 2.7e-11 43.2 0.0 0.4 10.7 0.0 6.6 7 0 0 7 7 7 3 Tetratricopeptide repeat DUF3856 PF12968.7 gi|386001437|ref|YP_005919736.1| - 1.3e-08 35.1 4.7 1.6 8.8 0.0 6.4 3 2 3 6 6 6 1 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|386001437|ref|YP_005919736.1| - 1.3e-07 30.9 0.0 0.03 13.3 0.1 4.0 1 1 3 4 4 4 2 NMDA receptor-regulated protein 1 Cnd1 PF12717.7 gi|386001437|ref|YP_005919736.1| - 3.2e-07 30.5 0.0 0.13 12.3 0.0 4.6 1 1 4 5 5 5 1 non-SMC mitotic condensation complex subunit 1 ANAPC3 PF12895.7 gi|386001437|ref|YP_005919736.1| - 9.4e-07 29.0 0.0 0.074 13.3 0.0 3.7 3 1 1 4 4 3 2 Anaphase-promoting complex, cyclosome, subunit 3 Aconitase_B_N PF11791.8 gi|386001437|ref|YP_005919736.1| - 1.5e-06 28.4 0.5 1.1 9.3 0.0 4.1 3 1 1 4 4 4 2 Aconitate B N-terminal domain BTAD PF03704.17 gi|386001437|ref|YP_005919736.1| - 6.2e-06 26.7 16.9 0.18 12.3 0.6 5.7 4 2 1 6 6 6 2 Bacterial transcriptional activator domain ERAP1_C PF11838.8 gi|386001437|ref|YP_005919736.1| - 0.0005 19.7 0.0 0.0029 17.2 0.0 2.1 1 1 1 2 2 2 1 ERAP1-like C-terminal domain MIT PF04212.18 gi|386001437|ref|YP_005919736.1| - 0.024 14.7 4.3 5.6 7.1 0.1 5.4 6 0 0 6 6 6 0 MIT (microtubule interacting and transport) domain DSX_dimer PF08828.10 gi|386001437|ref|YP_005919736.1| - 0.038 13.7 0.0 3.1 7.5 0.0 2.4 2 0 0 2 2 2 0 Doublesex dimerisation domain Fis1_TPR_C PF14853.6 gi|386001437|ref|YP_005919736.1| - 0.039 14.0 0.1 26 5.0 0.0 4.5 5 1 1 6 6 5 0 Fis1 C-terminal tetratricopeptide repeat TPR_5 PF12688.7 gi|386001437|ref|YP_005919736.1| - 0.052 13.8 6.1 1.4 9.1 0.1 4.2 4 3 1 5 5 4 0 Tetratrico peptide repeat Adaptin_N PF01602.20 gi|386001437|ref|YP_005919736.1| - 0.076 11.6 0.0 1.7 7.1 0.0 2.1 1 1 1 2 2 2 0 Adaptin N terminal region RasGEF_N_2 PF14663.6 gi|386001437|ref|YP_005919736.1| - 0.16 12.3 0.0 1.5e+02 2.8 0.0 4.2 2 1 4 6 6 5 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain CLASP_N PF12348.8 gi|386001437|ref|YP_005919736.1| - 0.2 11.2 0.2 38 3.7 0.0 3.8 3 3 3 6 6 6 0 CLASP N terminal BPS PF08947.10 gi|386001437|ref|YP_005919736.1| - 0.27 11.1 0.9 6.4 6.7 0.1 3.7 4 2 2 6 6 4 0 BPS (Between PH and SH2) DUF3385 PF11865.8 gi|386001437|ref|YP_005919736.1| - 0.31 10.9 0.2 27 4.6 0.0 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF3385) TPR_21 PF09976.9 gi|386001437|ref|YP_005919736.1| - 4.3 7.0 13.9 4 7.1 0.3 5.5 3 1 4 7 7 7 0 Tetratricopeptide repeat-like domain PPTA PF01239.22 gi|386001437|ref|YP_005919736.1| - 9.9 6.0 12.4 1.1e+02 2.7 0.1 5.1 5 0 0 5 5 5 0 Protein prenyltransferase alpha subunit repeat NosD PF05048.13 gi|386001438|ref|YP_005919737.1| - 1.6e-54 184.7 54.6 4.9e-28 98.0 5.1 4.0 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386001438|ref|YP_005919737.1| - 1.3e-40 138.8 65.2 1e-17 64.5 27.7 3.4 1 1 2 3 3 3 3 Right handed beta helix region ATC_hydrolase PF14196.6 gi|386001439|ref|YP_005919738.1| - 5.4e-09 37.0 0.1 6.4e-09 36.7 0.1 1.1 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase MetOD1 PF18546.1 gi|386001439|ref|YP_005919738.1| - 0.0049 16.8 0.2 0.014 15.4 0.2 1.7 1 1 0 1 1 1 1 Metanogen output domain 1 YAcAr PF10686.9 gi|386001439|ref|YP_005919738.1| - 0.15 12.0 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 YspA, cpYpsA-related SLOG family DUF5591 PF17884.1 gi|386001440|ref|YP_005919739.1| - 2.4e-49 167.2 0.0 3.5e-49 166.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|386001440|ref|YP_005919739.1| - 4.2e-13 49.0 0.6 9e-13 48.0 0.1 1.8 2 0 0 2 2 2 1 PUA domain TGT PF01702.18 gi|386001440|ref|YP_005919739.1| - 3.6e-08 33.0 0.0 4.9e-07 29.2 0.0 2.4 3 0 0 3 3 3 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.6 gi|386001440|ref|YP_005919739.1| - 2.1e-05 24.5 0.0 6.1e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.18 gi|386001441|ref|YP_005919740.1| - 6e-77 259.2 0.0 7.5e-77 258.8 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Aconitase PF00330.20 gi|386001442|ref|YP_005919741.1| - 3.2e-106 356.1 1.6 3.4e-104 349.4 1.6 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|386001442|ref|YP_005919741.1| - 3.7e-18 66.1 0.0 6.3e-18 65.4 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|386001442|ref|YP_005919741.1| - 0.012 14.3 0.0 0.018 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Diphthamide_syn PF01866.17 gi|386001443|ref|YP_005919742.1| - 1.7e-78 264.1 0.0 2.1e-78 263.8 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein XPG_I PF00867.18 gi|386001444|ref|YP_005919743.1| - 2.1e-25 88.9 0.0 3.7e-25 88.1 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|386001444|ref|YP_005919743.1| - 3.6e-17 62.7 0.0 5.8e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|386001444|ref|YP_005919743.1| - 3.3e-05 24.4 0.0 7.4e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 gi|386001444|ref|YP_005919743.1| - 0.0047 17.0 0.1 0.019 15.1 0.1 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|386001444|ref|YP_005919743.1| - 0.0088 16.6 0.3 0.72 10.5 0.0 3.1 3 0 0 3 3 3 1 Helix-hairpin-helix domain 5_3_exonuc_N PF02739.16 gi|386001444|ref|YP_005919743.1| - 0.015 15.2 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain AP_endonuc_2 PF01261.24 gi|386001444|ref|YP_005919743.1| - 0.091 12.2 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel BCL_N PF04714.13 gi|386001444|ref|YP_005919743.1| - 0.43 10.7 2.0 0.43 10.7 0.3 1.8 2 0 0 2 2 2 0 BCL7, N-terminal conserver region Fe-S_biosyn PF01521.20 gi|386001445|ref|YP_005919744.1| - 1.7e-05 25.0 0.0 2.1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis AMP-binding PF00501.28 gi|386001446|ref|YP_005919745.1| - 3e-88 296.2 0.0 3.7e-88 295.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|386001446|ref|YP_005919745.1| - 5.4e-29 101.0 0.5 1.8e-28 99.3 0.4 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|386001446|ref|YP_005919745.1| - 7.8e-16 57.7 3.9 7.8e-16 57.7 3.9 2.6 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding PF00501.28 gi|386001448|ref|YP_005919747.1| - 1.7e-89 300.4 0.0 2.1e-89 300.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|386001448|ref|YP_005919747.1| - 5.8e-29 100.9 0.4 2.1e-28 99.1 0.3 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|386001448|ref|YP_005919747.1| - 2.3e-16 59.5 3.5 2.3e-16 59.5 3.5 2.6 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding PF00501.28 gi|386001449|ref|YP_005919748.1| - 7.9e-93 311.3 0.0 9.8e-93 311.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|386001449|ref|YP_005919748.1| - 4.3e-27 94.9 4.9 8.3e-27 94.0 1.1 2.9 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|386001449|ref|YP_005919748.1| - 5.8e-19 67.8 2.8 5.8e-19 67.8 2.8 2.4 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus DUF1391 PF07151.12 gi|386001449|ref|YP_005919748.1| - 0.14 12.0 0.5 0.37 10.6 0.5 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1391) Radical_SAM PF04055.21 gi|386001450|ref|YP_005919749.1| - 9.4e-22 78.1 0.0 2.8e-21 76.6 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|386001450|ref|YP_005919749.1| - 1.6e-17 63.3 0.0 3e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|386001450|ref|YP_005919749.1| - 0.00021 21.2 0.0 0.0004 20.3 0.0 1.5 1 0 0 1 1 1 1 TRAM domain TetR_C_36 PF18598.1 gi|386001450|ref|YP_005919749.1| - 0.059 13.3 0.1 3.6 7.6 0.0 2.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain AI-2E_transport PF01594.16 gi|386001451|ref|YP_005919750.1| - 8.9e-40 136.8 35.5 1.2e-39 136.4 35.5 1.1 1 0 0 1 1 1 1 AI-2E family transporter DBI_PRT PF02277.17 gi|386001452|ref|YP_005919751.1| - 0.00013 21.3 1.6 0.00022 20.6 1.6 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase MoeA_N PF03453.17 gi|386001453|ref|YP_005919752.1| - 3e-36 124.6 0.6 5.1e-36 123.8 0.6 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|386001453|ref|YP_005919752.1| - 4.3e-22 78.3 0.0 8.9e-22 77.3 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|386001453|ref|YP_005919752.1| - 1.6e-13 50.6 0.3 1e-12 48.0 0.1 2.5 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) PPDK_N PF01326.19 gi|386001454|ref|YP_005919753.1| - 2.7e-114 381.8 0.3 4.2e-114 381.2 0.3 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|386001454|ref|YP_005919753.1| - 2e-85 286.5 0.1 2.8e-85 286.0 0.1 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|386001454|ref|YP_005919753.1| - 3.2e-25 87.6 2.3 8.1e-25 86.4 2.3 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Pyridoxal_deC PF00282.19 gi|386001455|ref|YP_005919754.1| - 8.2e-32 110.3 0.0 6.8e-31 107.3 0.0 1.9 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|386001455|ref|YP_005919754.1| - 4.1e-06 26.0 0.0 7.4e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|386001455|ref|YP_005919754.1| - 0.0039 16.5 0.0 0.006 15.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|386001455|ref|YP_005919754.1| - 0.12 11.6 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family TRAM PF01938.20 gi|386001456|ref|YP_005919755.1| - 1.7e-13 50.3 1.5 2e-13 50.1 1.5 1.1 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|386001456|ref|YP_005919755.1| - 0.1 12.3 0.2 0.26 11.1 0.2 1.6 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) TRAM PF01938.20 gi|386001457|ref|YP_005919756.1| - 1.9e-12 47.0 0.7 2.2e-12 46.8 0.7 1.1 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|386001457|ref|YP_005919756.1| - 0.056 13.2 0.3 0.094 12.5 0.3 1.3 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Methyltr_RsmB-F PF01189.17 gi|386001458|ref|YP_005919757.1| - 8e-50 169.3 0.0 1.1e-49 168.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|386001458|ref|YP_005919757.1| - 1.5e-06 28.6 0.0 3.1e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|386001458|ref|YP_005919757.1| - 9.3e-06 25.9 0.0 1.5e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|386001458|ref|YP_005919757.1| - 0.0014 19.3 0.3 0.0037 17.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|386001458|ref|YP_005919757.1| - 0.0036 17.1 0.0 0.0053 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|386001458|ref|YP_005919757.1| - 0.016 15.0 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF2431 PF10354.9 gi|386001458|ref|YP_005919757.1| - 0.038 14.3 0.0 0.17 12.1 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF2431) Methyltranf_PUA PF13636.6 gi|386001459|ref|YP_005919758.1| - 1.2e-11 44.4 0.0 1.9e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Radical_SAM PF04055.21 gi|386001460|ref|YP_005919759.1| - 2.4e-11 44.3 0.1 4.4e-11 43.5 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily PBP_like_2 PF12849.7 gi|386001461|ref|YP_005919760.1| - 2e-32 113.0 0.9 1.3e-31 110.3 0.9 1.8 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|386001461|ref|YP_005919760.1| - 3.8e-14 52.3 0.0 4.8e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|386001461|ref|YP_005919760.1| - 0.003 17.4 0.0 0.0085 15.9 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein HTH_20 PF12840.7 gi|386001464|ref|YP_005919763.1| - 3.6e-08 33.4 0.0 5.7e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|386001464|ref|YP_005919763.1| - 3.9e-05 23.4 0.1 0.00041 20.2 0.0 2.5 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family FUR PF01475.19 gi|386001464|ref|YP_005919763.1| - 0.04 14.1 0.0 0.048 13.8 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family FoP_duplication PF13865.6 gi|386001465|ref|YP_005919764.1| - 0.025 15.1 0.3 0.031 14.8 0.3 1.2 1 0 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 DUF5320 PF17253.2 gi|386001465|ref|YP_005919764.1| - 1.3 10.2 16.1 3 9.0 16.1 1.9 1 1 0 1 1 1 0 Family of unknown function (DUF5320) ABC_tran PF00005.27 gi|386001466|ref|YP_005919765.1| - 4.8e-30 104.9 0.0 6.6e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001466|ref|YP_005919765.1| - 9.3e-15 55.2 2.5 1.1e-09 38.6 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|386001466|ref|YP_005919765.1| - 0.011 16.3 0.1 0.02 15.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|386001466|ref|YP_005919765.1| - 0.016 14.6 0.1 2.6 7.4 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|386001466|ref|YP_005919765.1| - 0.027 14.7 0.2 0.11 12.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|386001466|ref|YP_005919765.1| - 0.031 14.0 0.0 3.2 7.4 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|386001466|ref|YP_005919765.1| - 0.047 13.4 0.1 0.21 11.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|386001466|ref|YP_005919765.1| - 0.058 13.1 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|386001466|ref|YP_005919765.1| - 0.15 11.4 0.1 4.3 6.7 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|386001466|ref|YP_005919765.1| - 0.16 12.4 0.1 0.58 10.6 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane PF01061.24 gi|386001467|ref|YP_005919766.1| - 3e-30 105.2 13.4 4.1e-30 104.8 13.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|386001467|ref|YP_005919766.1| - 6.3e-15 55.1 14.5 8e-15 54.8 14.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|386001467|ref|YP_005919766.1| - 2.5e-08 33.5 17.2 5.1e-08 32.5 17.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|386001467|ref|YP_005919766.1| - 0.00094 18.7 6.7 0.0012 18.4 6.7 1.3 1 0 0 1 1 1 1 CcmB protein ABC2_membrane_6 PF06182.11 gi|386001467|ref|YP_005919766.1| - 0.011 15.5 9.7 0.014 15.1 8.2 1.8 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|386001467|ref|YP_005919766.1| - 1.2 9.1 10.5 1.3 8.9 6.5 2.3 1 1 1 2 2 2 0 ABC-2 family transporter protein SBP_bac_3 PF00497.20 gi|386001470|ref|YP_005919769.1| - 8.3e-34 117.0 0.0 1.8e-33 115.9 0.0 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 dCMP_cyt_deam_2 PF08211.12 gi|386001470|ref|YP_005919769.1| - 3e-10 40.4 0.1 4.9e-10 39.7 0.1 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_1 PF00383.23 gi|386001470|ref|YP_005919769.1| - 7.2e-06 25.8 0.0 1.2e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Pirin PF02678.16 gi|386001470|ref|YP_005919769.1| - 0.16 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Pirin NT5C PF06941.12 gi|386001471|ref|YP_005919770.1| - 2.6e-14 53.5 0.0 3.3e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) MarR_2 PF12802.7 gi|386001472|ref|YP_005919771.1| - 0.0026 17.6 0.7 0.0042 16.9 0.1 1.7 2 1 0 2 2 2 1 MarR family TrmB PF01978.19 gi|386001472|ref|YP_005919771.1| - 0.01 15.7 0.1 0.02 14.7 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|386001472|ref|YP_005919771.1| - 0.052 13.5 0.2 0.21 11.5 0.0 2.1 2 1 0 2 2 2 0 MarR family Hfq PF17209.3 gi|386001473|ref|YP_005919772.1| - 3.7e-05 23.3 0.0 4.7e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Hfq protein LSM PF01423.22 gi|386001473|ref|YP_005919772.1| - 0.0012 18.5 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 LSM domain HTH_20 PF12840.7 gi|386001476|ref|YP_005919775.1| - 0.00025 21.0 0.2 0.00058 19.9 0.2 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain AAA_assoc_C PF09821.9 gi|386001476|ref|YP_005919775.1| - 0.2 12.2 0.0 0.32 11.5 0.0 1.2 1 0 0 1 1 1 0 C-terminal AAA-associated domain Nitroreductase PF00881.24 gi|386001478|ref|YP_005919777.1| - 7.3e-21 75.0 3.5 1.1e-12 48.4 0.5 2.5 2 1 1 3 3 3 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|386001478|ref|YP_005919777.1| - 1.6e-11 44.2 0.1 0.0089 15.6 0.5 3.3 2 2 1 3 3 3 3 Putative TM nitroreductase Pentapeptide_3 PF13576.6 gi|386001479|ref|YP_005919778.1| - 3.5e-22 78.3 69.2 2.9e-08 33.7 5.5 4.8 1 1 5 6 6 6 6 Pentapeptide repeats (9 copies) Ni_hydr_CYTB PF01292.20 gi|386001479|ref|YP_005919778.1| - 0.12 12.0 3.0 0.23 11.0 3.0 1.4 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 DUF763 PF05559.11 gi|386001480|ref|YP_005919779.1| - 1.2e-18 67.3 0.0 1.6e-18 67.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) EKAL PF17986.1 gi|386001480|ref|YP_005919779.1| - 0.061 13.4 0.0 0.098 12.7 0.0 1.4 1 0 0 1 1 1 0 EMP3-KAHRP-like N-terminal domain PPC PF04151.15 gi|386001482|ref|YP_005919781.1| - 1.3e-05 26.2 10.1 0.00022 22.3 2.3 4.4 4 2 0 4 4 4 2 Bacterial pre-peptidase C-terminal domain Gate PF07670.14 gi|386001483|ref|YP_005919782.1| - 0.0011 19.2 15.5 0.0079 16.5 3.1 2.7 2 1 0 2 2 2 2 Nucleoside recognition DHQS PF01959.16 gi|386001484|ref|YP_005919783.1| - 7.7e-145 482.2 0.6 8.6e-145 482.1 0.6 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II OapA PF04225.12 gi|386001484|ref|YP_005919783.1| - 0.011 15.8 0.1 0.44 10.7 0.0 2.8 3 0 0 3 3 3 0 Opacity-associated protein A LysM-like domain Hint PF01079.20 gi|386001484|ref|YP_005919783.1| - 0.12 11.9 0.1 8 5.9 0.1 2.3 2 0 0 2 2 2 0 Hint module DHquinase_I PF01487.15 gi|386001485|ref|YP_005919784.1| - 4.8e-39 134.9 0.0 6.2e-39 134.6 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase Prismane PF03063.20 gi|386001486|ref|YP_005919785.1| - 1.4e-87 294.5 3.8 3.4e-73 247.1 0.0 2.1 1 1 0 2 2 2 2 Prismane/CO dehydrogenase family Fer4_9 PF13187.6 gi|386001486|ref|YP_005919785.1| - 1.1e-06 28.7 9.1 1.1e-06 28.7 9.1 3.2 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001486|ref|YP_005919785.1| - 1.6e-06 28.1 20.4 2e-05 24.6 11.2 3.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386001486|ref|YP_005919785.1| - 1.9e-06 28.7 8.4 0.0025 18.7 0.5 3.5 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|386001486|ref|YP_005919785.1| - 2.7e-06 27.8 13.2 0.0042 17.6 0.8 3.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386001486|ref|YP_005919785.1| - 2.8e-05 24.5 1.0 0.0023 18.3 0.2 4.1 4 1 0 4 4 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386001486|ref|YP_005919785.1| - 0.00053 19.7 21.2 0.001 18.8 3.5 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|386001486|ref|YP_005919785.1| - 0.0014 18.8 7.4 0.0067 16.6 0.5 2.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001486|ref|YP_005919785.1| - 0.0025 17.8 26.5 0.023 14.8 4.1 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386001486|ref|YP_005919785.1| - 0.0081 16.7 13.8 0.0081 16.7 13.8 4.3 3 2 2 5 5 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386001486|ref|YP_005919785.1| - 0.02 14.9 2.8 0.02 14.9 2.8 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|386001486|ref|YP_005919785.1| - 4.8 7.0 17.3 3.1 7.6 9.9 3.0 2 1 1 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|386001486|ref|YP_005919785.1| - 7.9 6.7 24.3 0.45 10.7 1.6 3.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain CO_dh PF02552.16 gi|386001487|ref|YP_005919786.1| - 3.4e-36 124.5 0.0 3.9e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|386001487|ref|YP_005919786.1| - 0.00021 21.1 0.0 0.00055 19.7 0.0 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CdhC PF03598.15 gi|386001488|ref|YP_005919787.1| - 5.5e-56 188.7 0.1 9.2e-56 188.0 0.1 1.4 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit RPA_C PF08784.11 gi|386001488|ref|YP_005919787.1| - 0.026 15.2 0.0 0.064 13.9 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal RNA_pol_Rpc34 PF05158.12 gi|386001488|ref|YP_005919787.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Nitrate_red_gam PF02665.14 gi|386001489|ref|YP_005919788.1| - 9.5e-05 22.0 17.7 0.005 16.4 15.5 2.7 1 1 0 1 1 1 1 Nitrate reductase gamma subunit HeLo PF14479.6 gi|386001489|ref|YP_005919788.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Prion-inhibition and propagation CCG PF02754.16 gi|386001490|ref|YP_005919789.1| - 1.1e-23 83.3 11.3 2.6e-12 46.8 0.1 2.9 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|386001490|ref|YP_005919789.1| - 1.4e-08 35.1 2.8 1.4e-08 35.1 2.8 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386001490|ref|YP_005919789.1| - 2.8e-07 31.0 3.7 2.8e-07 31.0 3.7 3.4 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386001490|ref|YP_005919789.1| - 6.2e-05 23.9 3.7 6.2e-05 23.9 3.7 2.7 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|386001490|ref|YP_005919789.1| - 0.00025 21.1 7.6 0.00025 21.1 7.6 3.8 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|386001490|ref|YP_005919789.1| - 0.0014 18.8 1.5 1.6 9.0 0.1 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386001490|ref|YP_005919789.1| - 0.0036 17.9 11.7 0.0036 17.9 11.7 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001490|ref|YP_005919789.1| - 0.0048 17.0 12.7 0.0048 17.0 12.7 3.8 3 1 1 4 4 4 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386001490|ref|YP_005919789.1| - 0.017 15.2 9.4 0.84 9.8 0.5 3.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|386001490|ref|YP_005919789.1| - 0.059 14.2 13.5 9.1 7.2 0.1 4.2 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386001490|ref|YP_005919789.1| - 0.52 11.4 16.3 0.35 11.9 3.5 3.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386001490|ref|YP_005919789.1| - 2.3 8.5 16.8 0.7 10.1 1.4 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain FMN_red PF03358.15 gi|386001491|ref|YP_005919790.1| - 7e-29 100.6 0.0 9.9e-29 100.1 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|386001491|ref|YP_005919790.1| - 9e-15 54.9 0.0 1.4e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Transgly_assoc PF04226.13 gi|386001493|ref|YP_005919792.1| - 3.6e-10 40.0 12.5 3.6e-10 40.0 12.5 2.2 1 1 1 2 2 2 1 Transglycosylase associated protein DUF2254 PF10011.9 gi|386001493|ref|YP_005919792.1| - 0.17 10.7 3.6 0.22 10.3 3.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Gly-zipper_Omp PF13488.6 gi|386001493|ref|YP_005919792.1| - 1.6 8.8 21.8 1.4 9.0 12.1 2.2 1 1 1 2 2 2 0 Glycine zipper DUF4118 PF13493.6 gi|386001493|ref|YP_005919792.1| - 3.1 7.6 9.7 4.2 7.2 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4118) DUF4235 PF14019.6 gi|386001493|ref|YP_005919792.1| - 4.8 7.3 8.7 21 5.3 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF4235) SNARE_assoc PF09335.11 gi|386001493|ref|YP_005919792.1| - 5.6 7.5 14.2 0.71 10.4 8.7 2.0 1 1 1 2 2 2 0 SNARE associated Golgi protein FmdE PF02663.14 gi|386001495|ref|YP_005919794.1| - 6.4e-32 110.4 0.0 1.3e-31 109.4 0.0 1.6 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon PadR PF03551.14 gi|386001495|ref|YP_005919794.1| - 4.8e-14 52.1 0.0 1.1e-13 50.9 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family zf-dskA_traR PF01258.17 gi|386001495|ref|YP_005919794.1| - 1.6e-06 27.9 2.2 3.6e-06 26.8 2.2 1.6 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger FUR PF01475.19 gi|386001495|ref|YP_005919794.1| - 0.00059 20.0 0.0 0.0014 18.7 0.0 1.6 1 0 0 1 1 1 1 Ferric uptake regulator family DUF2129 PF09902.9 gi|386001495|ref|YP_005919794.1| - 0.0047 17.0 0.3 0.011 15.8 0.3 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2129) DUF4364 PF14277.6 gi|386001495|ref|YP_005919794.1| - 0.043 13.6 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Methyltransf_11 PF08241.12 gi|386001496|ref|YP_005919795.1| - 2.1e-14 53.9 0.0 2.9e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386001496|ref|YP_005919795.1| - 2e-12 47.2 0.0 2.4e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386001496|ref|YP_005919795.1| - 1.9e-11 44.5 0.0 2.9e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386001496|ref|YP_005919795.1| - 9.1e-11 41.5 0.0 1.1e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|386001496|ref|YP_005919795.1| - 3.1e-06 27.8 0.0 4.2e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|386001496|ref|YP_005919795.1| - 1.7e-05 24.8 0.0 1.8e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_2 PF00891.18 gi|386001496|ref|YP_005919795.1| - 0.00075 18.9 0.0 0.00092 18.6 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain POTRA PF07244.15 gi|386001496|ref|YP_005919795.1| - 0.064 13.8 0.0 0.12 13.0 0.0 1.4 1 0 0 1 1 1 0 Surface antigen variable number repeat TrmO PF01980.16 gi|386001497|ref|YP_005919796.1| - 2.3e-26 92.3 0.0 3.6e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 tRNA-methyltransferase O SBP_bac_5 PF00496.22 gi|386001498|ref|YP_005919797.1| - 1e-76 258.4 0.0 1.4e-76 257.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Peripla_BP_2 PF01497.18 gi|386001499|ref|YP_005919798.1| - 6.1e-23 81.6 0.0 9.1e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein MCR_C PF04609.12 gi|386001499|ref|YP_005919798.1| - 0.072 12.2 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyl-coenzyme M reductase operon protein C Peripla_BP_2 PF01497.18 gi|386001500|ref|YP_005919799.1| - 1.2e-19 70.9 0.0 2.2e-19 69.9 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|386001501|ref|YP_005919800.1| - 2.2e-93 312.7 29.3 2.7e-93 312.4 29.3 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|386001501|ref|YP_005919800.1| - 6.6e-08 32.4 13.7 6.6e-08 32.4 13.7 2.3 2 1 0 3 3 3 1 ABC 3 transport family LapA_dom PF06305.11 gi|386001501|ref|YP_005919800.1| - 0.0076 16.0 0.5 0.0076 16.0 0.5 3.3 4 0 0 4 4 4 1 Lipopolysaccharide assembly protein A domain ABC_tran PF00005.27 gi|386001502|ref|YP_005919801.1| - 1.1e-29 103.6 0.0 1.5e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001502|ref|YP_005919801.1| - 2.3e-13 50.7 0.0 1.5e-08 34.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|386001502|ref|YP_005919801.1| - 7.3e-07 28.8 0.0 2.3e-05 23.9 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|386001502|ref|YP_005919801.1| - 6.5e-05 23.5 0.1 9.9e-05 22.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|386001502|ref|YP_005919801.1| - 0.00011 22.7 0.0 0.0013 19.1 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|386001502|ref|YP_005919801.1| - 0.0014 18.4 0.0 1.6 8.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|386001502|ref|YP_005919801.1| - 0.012 16.1 0.0 0.016 15.6 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|386001502|ref|YP_005919801.1| - 0.02 14.5 0.0 0.57 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|386001502|ref|YP_005919801.1| - 0.022 14.8 0.0 0.62 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|386001502|ref|YP_005919801.1| - 0.035 14.0 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|386001502|ref|YP_005919801.1| - 0.042 13.6 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|386001502|ref|YP_005919801.1| - 0.21 11.5 0.0 0.49 10.3 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain Peripla_BP_2 PF01497.18 gi|386001503|ref|YP_005919802.1| - 4.2e-17 62.5 0.0 8.4e-17 61.5 0.0 1.7 1 1 0 1 1 1 1 Periplasmic binding protein Methyltransf_25 PF13649.6 gi|386001504|ref|YP_005919803.1| - 1.4e-11 44.9 0.0 3.1e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386001504|ref|YP_005919803.1| - 6.9e-08 33.1 0.0 1.2e-07 32.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386001504|ref|YP_005919803.1| - 1.2e-07 31.8 0.0 1.7e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|386001504|ref|YP_005919803.1| - 2.1e-07 30.3 0.0 4e-07 29.4 0.0 1.4 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|386001504|ref|YP_005919803.1| - 9.3e-07 29.4 0.0 2.1e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386001504|ref|YP_005919803.1| - 6e-06 26.1 0.0 9.2e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|386001504|ref|YP_005919803.1| - 1.4e-05 24.7 0.0 2.3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain GidB PF02527.15 gi|386001504|ref|YP_005919803.1| - 2.1e-05 23.9 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.20 gi|386001504|ref|YP_005919803.1| - 0.00098 18.5 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.12 gi|386001504|ref|YP_005919803.1| - 0.0014 17.8 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Met_10 PF02475.16 gi|386001504|ref|YP_005919803.1| - 0.0014 18.4 0.0 0.18 11.5 0.0 2.5 2 1 1 3 3 3 1 Met-10+ like-protein PrmA PF06325.13 gi|386001504|ref|YP_005919803.1| - 0.002 17.6 0.0 0.0062 16.0 0.0 1.7 1 1 1 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|386001504|ref|YP_005919803.1| - 0.0021 17.8 0.0 0.0032 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|386001504|ref|YP_005919803.1| - 0.0044 16.7 0.0 0.0066 16.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_16 PF10294.9 gi|386001504|ref|YP_005919803.1| - 0.028 14.2 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase TehB PF03848.14 gi|386001504|ref|YP_005919803.1| - 0.12 11.7 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_15 PF09445.10 gi|386001504|ref|YP_005919803.1| - 0.16 11.6 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.11 gi|386001504|ref|YP_005919803.1| - 0.16 10.9 0.0 0.23 10.4 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Peripla_BP_2 PF01497.18 gi|386001505|ref|YP_005919804.1| - 4.7e-20 72.2 0.0 7.3e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein ZapA PF05164.13 gi|386001505|ref|YP_005919804.1| - 0.1 13.1 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 Cell division protein ZapA RNA_pol_A_bac PF01000.26 gi|386001506|ref|YP_005919805.1| - 2.7e-23 82.5 0.0 4.7e-23 81.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|386001506|ref|YP_005919805.1| - 3.1e-17 61.8 0.0 3.8e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.27 gi|386001506|ref|YP_005919805.1| - 5.3e-09 35.5 13.3 4.8e-06 26.2 3.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|386001506|ref|YP_005919805.1| - 4.8e-07 29.8 7.9 4.8e-07 29.8 7.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386001506|ref|YP_005919805.1| - 7.4e-07 29.7 8.6 7.4e-07 29.7 8.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001506|ref|YP_005919805.1| - 5.4e-06 26.4 7.6 5.4e-06 26.4 7.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386001506|ref|YP_005919805.1| - 0.00014 21.8 12.8 0.00026 20.9 2.7 2.8 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386001506|ref|YP_005919805.1| - 0.00037 20.4 3.3 0.00037 20.4 3.3 3.6 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386001506|ref|YP_005919805.1| - 0.0004 21.3 12.2 0.0016 19.3 0.9 3.0 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|386001506|ref|YP_005919805.1| - 0.0098 16.3 3.7 0.0098 16.3 3.7 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|386001506|ref|YP_005919805.1| - 0.017 15.6 0.7 0.017 15.6 0.7 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386001506|ref|YP_005919805.1| - 0.02 15.3 14.2 0.46 11.0 8.8 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386001506|ref|YP_005919805.1| - 0.032 15.2 5.8 0.032 15.2 5.8 3.4 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386001506|ref|YP_005919805.1| - 0.034 14.3 4.4 0.034 14.3 4.4 2.8 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386001506|ref|YP_005919805.1| - 0.64 10.6 7.2 3.2 8.3 7.2 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|386001506|ref|YP_005919805.1| - 1.3 9.3 10.0 3 8.1 10.0 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386001506|ref|YP_005919805.1| - 1.5 9.6 11.9 0.15 12.8 2.2 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Ribosomal_S11 PF00411.19 gi|386001507|ref|YP_005919806.1| - 2.4e-45 153.4 7.0 3.9e-45 152.8 7.0 1.3 1 1 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.25 gi|386001508|ref|YP_005919807.1| - 1.4e-13 50.3 1.4 1.7e-13 50.0 0.1 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S13 PF00416.22 gi|386001509|ref|YP_005919808.1| - 6.9e-38 129.9 4.4 8e-38 129.7 4.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 EPSP_synthase PF00275.20 gi|386001510|ref|YP_005919809.1| - 5.8e-109 364.5 0.2 7e-109 364.3 0.2 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GHMP_kinases_N PF00288.26 gi|386001510|ref|YP_005919809.1| - 7.1 6.9 6.7 0.84 9.9 0.2 2.6 3 0 0 3 3 3 0 GHMP kinases N terminal domain RrnaAD PF00398.20 gi|386001511|ref|YP_005919810.1| - 2.3e-50 171.1 0.0 2.5e-50 171.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|386001511|ref|YP_005919810.1| - 7e-06 26.7 0.0 1.2e-05 25.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386001511|ref|YP_005919810.1| - 0.00044 20.8 0.0 0.00079 20.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386001511|ref|YP_005919810.1| - 0.0013 18.6 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|386001511|ref|YP_005919810.1| - 0.0075 16.0 0.0 0.048 13.4 0.0 1.9 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|386001511|ref|YP_005919810.1| - 0.027 14.3 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|386001511|ref|YP_005919810.1| - 0.046 13.7 0.0 0.072 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|386001511|ref|YP_005919810.1| - 0.085 13.0 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_12 PF08242.12 gi|386001511|ref|YP_005919810.1| - 0.11 13.2 0.0 0.17 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|386001511|ref|YP_005919810.1| - 0.2 10.7 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase DUF655 PF04919.12 gi|386001512|ref|YP_005919811.1| - 8e-60 201.9 0.0 8.9e-60 201.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|386001512|ref|YP_005919811.1| - 9.4e-06 25.8 0.0 1.7e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|386001512|ref|YP_005919811.1| - 2.5e-05 24.5 0.0 7.1e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|386001513|ref|YP_005919812.1| - 4.8e-08 33.4 1.8 6.7e-08 32.9 1.8 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF3567 PF12091.8 gi|386001513|ref|YP_005919812.1| - 0.16 12.2 0.3 0.32 11.1 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3567) COOH-NH2_lig PF14395.6 gi|386001513|ref|YP_005919812.1| - 0.16 11.2 0.9 2.5 7.3 0.2 2.0 1 1 1 2 2 2 0 Phage phiEco32-like COOH.NH2 ligase-type 2 Ribosomal_L21e PF01157.18 gi|386001514|ref|YP_005919813.1| - 4.8e-34 116.2 0.4 5.3e-34 116.1 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|386001515|ref|YP_005919814.1| - 4.2e-10 39.9 0.0 7.1e-09 35.9 0.0 2.3 2 0 0 2 2 2 1 THUMP domain Methyltrn_RNA_2 PF04013.12 gi|386001516|ref|YP_005919815.1| - 9.9e-51 172.3 0.0 1.1e-50 172.1 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SAMP PF05924.11 gi|386001516|ref|YP_005919815.1| - 0.092 12.1 0.4 0.21 10.9 0.4 1.6 1 0 0 1 1 1 0 SAMP Motif Peptidase_S8 PF00082.22 gi|386001517|ref|YP_005919816.1| - 9.5e-21 74.3 0.0 9.1e-18 64.5 0.0 2.3 2 1 0 2 2 2 2 Subtilase family VCBS PF13517.6 gi|386001518|ref|YP_005919817.1| - 4.7e-33 113.6 31.9 1.7e-08 34.9 2.2 7.6 4 2 4 8 8 8 7 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|386001518|ref|YP_005919817.1| - 2.1e-18 66.1 61.8 0.00021 21.3 1.5 10.1 9 2 0 9 9 9 7 FG-GAP repeat BBS2_Mid PF14783.6 gi|386001518|ref|YP_005919817.1| - 2.6e-18 66.0 1.0 0.026 14.6 0.0 7.5 7 0 0 7 7 7 5 Ciliary BBSome complex subunit 2, middle region Itfg2 PF15907.5 gi|386001518|ref|YP_005919817.1| - 2.4e-12 46.5 17.1 0.041 12.9 0.0 7.5 5 2 3 8 8 8 6 Integrin-alpha FG-GAP repeat-containing protein 2 PQQ_3 PF13570.6 gi|386001518|ref|YP_005919817.1| - 1.1e-08 35.3 21.7 0.062 13.8 0.0 7.3 7 1 0 7 7 7 3 PQQ-like domain PQQ PF01011.21 gi|386001518|ref|YP_005919817.1| - 9.1e-05 22.2 9.2 2.6 8.1 0.0 6.3 6 0 0 6 6 6 2 PQQ enzyme repeat PliI PF16743.5 gi|386001518|ref|YP_005919817.1| - 0.00078 19.2 0.6 0.54 10.0 0.0 4.2 5 0 0 5 5 5 1 Periplasmic lysozyme inhibitor of I-type lysozyme WD40 PF00400.32 gi|386001518|ref|YP_005919817.1| - 0.048 14.5 7.4 1.8 9.6 0.1 4.8 4 1 0 4 4 4 0 WD domain, G-beta repeat TcdB_toxin_midN PF12256.8 gi|386001518|ref|YP_005919817.1| - 0.062 12.7 23.1 2.5 7.4 0.1 7.2 6 2 2 8 8 8 0 Insecticide toxin TcdB middle/N-terminal region EF-hand_1 PF00036.32 gi|386001518|ref|YP_005919817.1| - 3.3 7.5 21.6 58 3.6 0.0 7.2 7 0 0 7 7 7 0 EF hand PAC2 PF09754.9 gi|386001520|ref|YP_005919819.1| - 1.5e-28 100.3 0.1 1.7e-28 100.1 0.1 1.0 1 0 0 1 1 1 1 PAC2 family DUF89 PF01937.19 gi|386001521|ref|YP_005919820.1| - 3.6e-34 118.3 0.2 7.1e-33 114.0 0.2 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF89 EVC2_like PF12297.8 gi|386001521|ref|YP_005919820.1| - 0.11 11.2 0.1 0.15 10.7 0.1 1.1 1 0 0 1 1 1 0 Ellis van Creveld protein 2 like protein Hist_deacetyl PF00850.19 gi|386001522|ref|YP_005919821.1| - 8.8e-34 117.4 0.4 1.6e-32 113.2 0.6 2.4 1 1 1 2 2 2 1 Histone deacetylase domain PYNP_C PF07831.13 gi|386001523|ref|YP_005919822.1| - 2.1e-15 56.1 0.2 1.4e-14 53.4 0.0 2.3 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.17 gi|386001523|ref|YP_005919822.1| - 7.3e-15 54.6 0.1 2.3e-14 52.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.21 gi|386001523|ref|YP_005919822.1| - 2.6e-11 43.6 0.3 9.1e-11 41.8 0.3 1.8 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain DUF2254 PF10011.9 gi|386001523|ref|YP_005919822.1| - 7.8e-05 21.7 0.0 0.00013 21.0 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Molydop_binding PF01568.21 gi|386001523|ref|YP_005919822.1| - 9.7e-05 22.4 0.1 0.0002 21.3 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain NTP_transf_2 PF01909.23 gi|386001525|ref|YP_005919824.1| - 3.7e-05 24.0 0.0 7.7e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Sua5_yciO_yrdC PF01300.18 gi|386001526|ref|YP_005919825.1| - 8.7e-47 158.9 0.0 9.8e-47 158.7 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination HTH_3 PF01381.22 gi|386001527|ref|YP_005919826.1| - 3.9e-05 23.6 0.3 5.9e-05 23.0 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|386001527|ref|YP_005919826.1| - 0.00027 20.9 0.2 0.00097 19.1 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|386001527|ref|YP_005919826.1| - 0.0022 18.3 0.0 0.0045 17.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|386001527|ref|YP_005919826.1| - 0.035 14.0 0.2 0.11 12.3 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain AAA PF00004.29 gi|386001528|ref|YP_005919827.1| - 6.7e-43 146.3 0.0 1.3e-42 145.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Prot_ATP_ID_OB PF16450.5 gi|386001528|ref|YP_005919827.1| - 6.6e-12 45.2 0.2 2e-11 43.7 0.1 1.9 2 0 0 2 2 2 1 Proteasomal ATPase OB C-terminal domain AAA_lid_3 PF17862.1 gi|386001528|ref|YP_005919827.1| - 2.6e-11 43.1 1.2 6.3e-11 41.9 1.2 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|386001528|ref|YP_005919827.1| - 6e-06 26.3 1.0 4.5e-05 23.5 0.1 3.0 3 2 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|386001528|ref|YP_005919827.1| - 6.2e-06 26.7 2.5 0.00078 19.9 0.1 3.0 2 1 0 3 3 3 1 AAA ATPase domain AAA_2 PF07724.14 gi|386001528|ref|YP_005919827.1| - 1.3e-05 25.3 0.0 2.7e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Prot_ATP_OB_N PF17758.1 gi|386001528|ref|YP_005919827.1| - 8.1e-05 22.2 2.8 0.00024 20.7 0.2 2.8 4 0 0 4 4 3 1 Proteasomal ATPase OB N-terminal domain RuvB_N PF05496.12 gi|386001528|ref|YP_005919827.1| - 9.3e-05 22.2 0.0 0.00022 21.0 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|386001528|ref|YP_005919827.1| - 0.00012 21.3 0.0 0.0002 20.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|386001528|ref|YP_005919827.1| - 0.00032 21.0 0.3 0.019 15.2 0.1 2.6 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.13 gi|386001528|ref|YP_005919827.1| - 0.0045 16.2 0.0 0.0087 15.3 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|386001528|ref|YP_005919827.1| - 0.0051 16.2 0.0 0.013 14.9 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|386001528|ref|YP_005919827.1| - 0.0053 17.3 0.1 0.019 15.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|386001528|ref|YP_005919827.1| - 0.0063 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Filament PF00038.21 gi|386001528|ref|YP_005919827.1| - 0.0067 16.0 1.8 0.012 15.3 1.8 1.2 1 0 0 1 1 1 1 Intermediate filament protein AAA_28 PF13521.6 gi|386001528|ref|YP_005919827.1| - 0.0095 16.2 0.8 0.014 15.7 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|386001528|ref|YP_005919827.1| - 0.012 15.8 0.0 0.026 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|386001528|ref|YP_005919827.1| - 0.012 16.0 0.0 0.021 15.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_3 PF07726.11 gi|386001528|ref|YP_005919827.1| - 0.012 15.5 0.0 0.026 14.4 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|386001528|ref|YP_005919827.1| - 0.014 15.0 0.0 0.026 14.1 0.0 1.4 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|386001528|ref|YP_005919827.1| - 0.019 14.7 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|386001528|ref|YP_005919827.1| - 0.029 14.1 0.2 0.087 12.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|386001528|ref|YP_005919827.1| - 0.035 13.4 0.1 0.1 11.9 0.0 1.8 2 0 0 2 2 2 0 KaiC NTPase_1 PF03266.15 gi|386001528|ref|YP_005919827.1| - 0.036 14.0 0.1 0.15 12.0 0.0 2.0 2 0 0 2 2 2 0 NTPase ABC_tran PF00005.27 gi|386001528|ref|YP_005919827.1| - 0.04 14.4 0.1 0.55 10.7 0.0 2.2 2 0 0 2 2 2 0 ABC transporter AAA_11 PF13086.6 gi|386001528|ref|YP_005919827.1| - 0.043 13.6 0.5 0.87 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|386001528|ref|YP_005919827.1| - 0.052 13.5 0.3 0.73 9.7 0.0 2.6 2 1 1 3 3 3 0 NACHT domain Sigma54_activat PF00158.26 gi|386001528|ref|YP_005919827.1| - 0.076 12.7 0.0 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain TsaE PF02367.17 gi|386001528|ref|YP_005919827.1| - 0.087 12.8 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Parvo_NS1 PF01057.17 gi|386001528|ref|YP_005919827.1| - 0.088 11.9 0.0 0.2 10.7 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|386001528|ref|YP_005919827.1| - 0.11 11.9 0.1 0.2 11.1 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein ATPase_2 PF01637.18 gi|386001528|ref|YP_005919827.1| - 0.12 12.3 0.0 2 8.3 0.0 2.2 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|386001528|ref|YP_005919827.1| - 0.22 11.1 2.7 0.22 11.1 0.2 2.1 2 1 0 2 2 2 0 AAA domain CTP-dep_RFKase PF01982.16 gi|386001529|ref|YP_005919828.1| - 7.1e-38 129.4 0.0 8.1e-38 129.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 MazE_antitoxin PF04014.18 gi|386001529|ref|YP_005919828.1| - 0.013 15.4 2.0 0.026 14.5 0.4 2.1 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin LysM PF01476.20 gi|386001532|ref|YP_005919831.1| - 6.6e-20 70.9 0.0 0.0048 16.9 0.0 8.3 8 0 0 8 8 8 5 LysM domain DUF2093 PF09866.9 gi|386001532|ref|YP_005919831.1| - 0.041 13.3 0.1 0.1 12.0 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2093) Phage_tail_X PF05489.12 gi|386001532|ref|YP_005919831.1| - 0.13 11.9 0.4 2.2 8.0 0.4 2.7 2 0 0 2 2 2 0 Phage Tail Protein X RPN6_N PF18055.1 gi|386001532|ref|YP_005919831.1| - 0.22 11.9 0.3 0.42 11.0 0.3 1.4 1 0 0 1 1 1 0 26S proteasome regulatory subunit RPN6 N-terminal domain 2-Hacid_dh_C PF02826.19 gi|386001533|ref|YP_005919832.1| - 1.1e-64 217.1 0.2 2.3e-64 216.0 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|386001533|ref|YP_005919832.1| - 2.3e-43 147.0 0.9 4.8e-43 146.0 0.8 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|386001533|ref|YP_005919832.1| - 3.2e-06 27.4 0.6 9.5e-06 25.9 0.0 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|386001533|ref|YP_005919832.1| - 2e-05 24.7 0.6 0.00035 20.7 0.0 2.4 1 1 1 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|386001533|ref|YP_005919832.1| - 0.00075 19.1 0.0 0.0045 16.6 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain UDPG_MGDP_dh_C PF03720.15 gi|386001533|ref|YP_005919832.1| - 0.027 14.9 0.0 0.15 12.5 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DUF5608 PF18356.1 gi|386001533|ref|YP_005919832.1| - 0.042 13.8 0.4 0.84 9.7 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF5608) 4HFCP_synth PF04476.13 gi|386001534|ref|YP_005919833.1| - 1.2e-88 296.7 0.2 1.3e-88 296.5 0.2 1.0 1 0 0 1 1 1 1 4-HFC-P synthase His_biosynth PF00977.21 gi|386001535|ref|YP_005919834.1| - 3.7e-26 92.0 0.0 4.8e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|386001535|ref|YP_005919834.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG FeoB_N PF02421.18 gi|386001536|ref|YP_005919835.1| - 1.3e-50 170.9 0.1 1.9e-50 170.4 0.1 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|386001536|ref|YP_005919835.1| - 1.4e-25 89.7 16.5 8.7e-13 48.5 7.5 2.9 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|386001536|ref|YP_005919835.1| - 3.4e-16 59.3 0.0 5.9e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|386001536|ref|YP_005919835.1| - 8e-12 44.7 0.3 8e-12 44.7 0.3 3.0 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus AIG1 PF04548.16 gi|386001536|ref|YP_005919835.1| - 1.5e-05 24.4 0.0 2.5e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 AIG1 family SRPRB PF09439.10 gi|386001536|ref|YP_005919835.1| - 0.0036 16.7 0.0 0.0059 16.1 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|386001536|ref|YP_005919835.1| - 0.11 12.7 0.0 0.92 9.7 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase RsmJ PF04378.13 gi|386001537|ref|YP_005919836.1| - 1.3e-12 47.5 0.0 1.9e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA large subunit methyltransferase D, RlmJ AcetylCoA_hyd_C PF13336.6 gi|386001538|ref|YP_005919837.1| - 5.1e-60 201.9 0.0 7.7e-60 201.3 0.0 1.3 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 gi|386001538|ref|YP_005919837.1| - 1.3e-46 159.1 0.0 3.6e-46 157.6 0.0 1.7 2 0 0 2 2 2 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.25 gi|386001538|ref|YP_005919837.1| - 7.4e-11 42.3 0.0 3.5e-10 40.1 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|386001538|ref|YP_005919837.1| - 3.5e-09 37.4 0.0 7.1e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|386001538|ref|YP_005919837.1| - 3.3e-07 30.6 0.0 7.1e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|386001538|ref|YP_005919837.1| - 4.2e-06 27.1 0.0 9.4e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|386001538|ref|YP_005919837.1| - 2.9e-05 24.0 0.1 5.7e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CoA_trans PF01144.23 gi|386001538|ref|YP_005919837.1| - 0.00017 21.1 0.0 0.37 10.1 0.0 2.4 2 0 0 2 2 2 2 Coenzyme A transferase FR47 PF08445.10 gi|386001538|ref|YP_005919837.1| - 0.001 19.0 0.0 0.0025 17.8 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein DeoRC PF00455.22 gi|386001538|ref|YP_005919837.1| - 0.01 15.8 0.0 0.074 13.0 0.0 2.3 3 0 0 3 3 3 0 DeoR C terminal sensor domain Mal_decarbox_Al PF16957.5 gi|386001538|ref|YP_005919837.1| - 0.018 13.4 0.1 2.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Malonate decarboxylase, alpha subunit, transporter Acetyltransf_CG PF14542.6 gi|386001538|ref|YP_005919837.1| - 0.09 12.9 0.1 0.3 11.3 0.1 1.9 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Glyoxalase PF00903.25 gi|386001540|ref|YP_005919839.1| - 6.2e-11 42.6 0.0 1.6e-10 41.3 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|386001540|ref|YP_005919839.1| - 5.1e-08 33.7 0.0 1.7e-07 32.0 0.0 1.7 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|386001540|ref|YP_005919839.1| - 0.0011 18.9 0.0 0.0063 16.4 0.0 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain Cdd1 PF11731.8 gi|386001541|ref|YP_005919840.1| - 3.9e-35 119.9 0.0 4.5e-35 119.7 0.0 1.0 1 0 0 1 1 1 1 Pathogenicity locus TfoX_C PF04994.13 gi|386001541|ref|YP_005919840.1| - 0.12 12.5 0.0 0.24 11.5 0.0 1.5 2 0 0 2 2 2 0 TfoX C-terminal domain HHH_5 PF14520.6 gi|386001541|ref|YP_005919840.1| - 0.15 12.7 0.0 0.2 12.3 0.0 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix domain AGOG PF09171.10 gi|386001542|ref|YP_005919841.1| - 0.11 11.8 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 N-glycosylase/DNA lyase DUF4130 PF13566.6 gi|386001543|ref|YP_005919842.1| - 9.3e-15 54.9 0.0 1.3e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 Radical_SAM PF04055.21 gi|386001544|ref|YP_005919843.1| - 2e-10 41.3 0.0 3.1e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|386001544|ref|YP_005919843.1| - 5.8e-08 32.9 0.0 1.6e-07 31.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|386001544|ref|YP_005919843.1| - 1.1e-06 28.2 0.0 5e-06 26.1 0.0 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|386001544|ref|YP_005919843.1| - 0.00027 21.5 0.0 0.0011 19.5 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain Fer4_12 PF13353.6 gi|386001544|ref|YP_005919843.1| - 0.00048 20.4 0.0 0.0007 19.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain HHH_2 PF12826.7 gi|386001544|ref|YP_005919843.1| - 0.12 12.5 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif ShK PF01549.24 gi|386001544|ref|YP_005919843.1| - 3.3 8.3 5.3 0.57 10.8 1.0 1.9 3 0 0 3 3 3 0 ShK domain-like P_proprotein PF01483.20 gi|386001545|ref|YP_005919844.1| - 1.5e-38 130.7 0.0 2e-18 66.2 0.0 2.4 2 0 0 2 2 2 2 Proprotein convertase P-domain Peptidase_S8 PF00082.22 gi|386001545|ref|YP_005919844.1| - 4.2e-29 101.8 0.0 6.4e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 Subtilase family AcetylCoA_hyd_C PF13336.6 gi|386001546|ref|YP_005919845.1| - 2.2e-53 180.3 0.0 3.2e-53 179.8 0.0 1.3 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 gi|386001546|ref|YP_005919845.1| - 2.9e-31 109.0 0.0 5.4e-31 108.1 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.25 gi|386001546|ref|YP_005919845.1| - 1.1e-10 41.8 0.1 2e-10 40.9 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|386001546|ref|YP_005919845.1| - 4.8e-09 37.0 0.0 8.1e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|386001546|ref|YP_005919845.1| - 7.7e-06 26.1 0.0 1.3e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|386001546|ref|YP_005919845.1| - 3.3e-05 23.8 0.0 6.2e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|386001546|ref|YP_005919845.1| - 7.9e-05 23.0 0.1 0.00017 21.9 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|386001546|ref|YP_005919845.1| - 0.00032 20.6 0.0 0.00072 19.5 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein CoA_trans PF01144.23 gi|386001546|ref|YP_005919845.1| - 0.0017 17.8 0.0 1.7 8.0 0.0 2.5 2 0 0 2 2 2 2 Coenzyme A transferase DUF480 PF04337.12 gi|386001546|ref|YP_005919845.1| - 0.21 11.6 0.0 0.38 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF480 Hist_deacetyl PF00850.19 gi|386001547|ref|YP_005919846.1| - 3.5e-78 263.2 0.0 6.1e-78 262.4 0.0 1.4 1 0 0 1 1 1 1 Histone deacetylase domain tRNA_anti-codon PF01336.25 gi|386001549|ref|YP_005919848.1| - 0.007 16.3 0.0 0.0099 15.9 0.0 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain FpoO PF10621.9 gi|386001550|ref|YP_005919849.1| - 5e-15 55.8 0.6 5.2e-15 55.7 0.6 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO SAM_adeno_trans PF01887.16 gi|386001551|ref|YP_005919850.1| - 2.4e-74 249.7 0.0 2.7e-74 249.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Bac_luciferase PF00296.20 gi|386001552|ref|YP_005919851.1| - 3.7e-61 207.3 3.3 4.5e-61 207.0 3.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase CTP_transf_like PF01467.26 gi|386001553|ref|YP_005919852.1| - 3.8e-15 56.3 0.0 6.7e-15 55.5 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|386001553|ref|YP_005919852.1| - 0.01 15.7 0.1 0.017 15.0 0.1 1.3 1 0 0 1 1 1 0 FAD synthetase HIGH_NTase1 PF05636.11 gi|386001553|ref|YP_005919852.1| - 0.067 12.4 0.0 6.5 5.8 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase TPR_1 PF00515.28 gi|386001554|ref|YP_005919853.1| - 3e-121 390.8 31.6 3.7e-11 42.4 0.2 11.1 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386001554|ref|YP_005919853.1| - 1.3e-95 306.0 38.9 8.3e-09 34.9 0.1 11.2 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386001554|ref|YP_005919853.1| - 1e-92 303.5 49.2 3e-10 39.6 0.1 12.0 1 1 11 12 12 12 11 TPR repeat TPR_8 PF13181.6 gi|386001554|ref|YP_005919853.1| - 8.3e-85 272.1 22.3 6.6e-08 32.2 0.2 11.1 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386001554|ref|YP_005919853.1| - 3e-76 246.5 30.4 6.7e-07 29.3 0.0 11.7 12 0 0 12 12 11 11 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386001554|ref|YP_005919853.1| - 2e-71 236.4 60.0 2.1e-11 44.2 1.0 8.2 2 2 6 9 9 9 9 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386001554|ref|YP_005919853.1| - 4.6e-61 203.0 55.1 6.2e-11 42.4 2.5 8.6 2 2 6 8 8 8 8 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001554|ref|YP_005919853.1| - 3.2e-51 167.6 24.5 1.5e-05 24.7 0.1 11.1 11 0 0 11 11 11 11 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001554|ref|YP_005919853.1| - 6e-48 157.4 36.9 0.00024 21.7 0.2 11.2 1 1 10 11 11 11 11 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386001554|ref|YP_005919853.1| - 1.1e-36 125.1 24.9 5.3e-08 33.3 1.7 6.8 5 1 2 7 7 7 7 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001554|ref|YP_005919853.1| - 3.3e-35 120.1 27.8 1.4e-08 34.8 0.9 7.2 2 1 3 7 7 7 7 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386001554|ref|YP_005919853.1| - 1.8e-31 107.1 45.3 0.00027 20.7 0.2 11.2 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386001554|ref|YP_005919853.1| - 7.6e-25 85.9 22.0 0.031 14.9 0.1 11.2 9 2 2 11 11 11 6 Tetratricopeptide repeat DUF3856 PF12968.7 gi|386001554|ref|YP_005919853.1| - 2.1e-22 79.7 5.4 0.046 13.8 0.1 9.7 3 2 6 9 9 9 5 Domain of Unknown Function (DUF3856) TPR_4 PF07721.14 gi|386001554|ref|YP_005919853.1| - 2.8e-19 67.7 24.5 0.32 11.7 0.3 10.6 10 0 0 10 10 10 4 Tetratricopeptide repeat BTAD PF03704.17 gi|386001554|ref|YP_005919853.1| - 7.3e-18 65.4 23.3 0.00032 21.2 0.3 6.0 3 1 2 6 6 6 5 Bacterial transcriptional activator domain TPR_5 PF12688.7 gi|386001554|ref|YP_005919853.1| - 7.5e-10 39.1 11.6 0.32 11.3 0.0 8.3 4 4 4 8 8 8 2 Tetratrico peptide repeat Fis1_TPR_C PF14853.6 gi|386001554|ref|YP_005919853.1| - 8.6e-10 38.5 22.3 2.1 8.5 0.0 10.1 9 2 2 11 11 11 1 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.18 gi|386001554|ref|YP_005919853.1| - 1e-09 38.3 27.6 1.8 8.7 0.2 10.2 11 0 0 11 11 11 3 MIT (microtubule interacting and transport) domain NARP1 PF12569.8 gi|386001554|ref|YP_005919853.1| - 1.8e-08 33.8 0.3 0.27 10.1 0.0 5.3 1 1 4 6 6 6 1 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|386001554|ref|YP_005919853.1| - 2.9e-08 33.3 12.5 0.07 12.3 0.0 5.4 1 1 4 5 5 5 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386001554|ref|YP_005919853.1| - 2.9e-08 33.8 11.4 0.038 14.2 0.0 4.9 3 3 0 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 Coatomer_E PF04733.14 gi|386001554|ref|YP_005919853.1| - 1.1e-07 31.6 0.3 0.46 9.9 0.0 4.1 1 1 2 4 4 4 2 Coatomer epsilon subunit FAT PF02259.23 gi|386001554|ref|YP_005919853.1| - 5e-07 29.2 3.4 1.8 7.7 0.4 6.1 2 2 5 7 7 7 1 FAT domain DUF2799 PF10973.8 gi|386001554|ref|YP_005919853.1| - 3.2e-05 24.2 2.8 14 6.2 0.1 6.3 7 1 1 8 8 7 0 Protein of unknown function (DUF2799) PPTA PF01239.22 gi|386001554|ref|YP_005919853.1| - 0.00047 19.8 3.6 9.3 6.1 0.0 6.2 6 0 0 6 6 6 0 Protein prenyltransferase alpha subunit repeat RPN7 PF10602.9 gi|386001554|ref|YP_005919853.1| - 0.0009 19.0 3.5 16 5.2 0.1 5.8 2 2 5 7 7 7 0 26S proteasome subunit RPN7 NRBF2_MIT PF17169.4 gi|386001554|ref|YP_005919853.1| - 0.0018 18.4 11.2 2.1 8.6 0.1 7.1 7 3 3 10 10 7 1 MIT domain of nuclear receptor-binding factor 2 TPR_20 PF14561.6 gi|386001554|ref|YP_005919853.1| - 0.0025 18.1 3.0 32 4.9 0.1 4.9 3 2 0 4 4 4 0 Tetratricopeptide repeat EST1_DNA_bind PF10373.9 gi|386001554|ref|YP_005919853.1| - 0.003 17.1 3.0 1.5 8.2 0.0 3.7 3 1 0 3 3 3 1 Est1 DNA/RNA binding domain PPR PF01535.20 gi|386001554|ref|YP_005919853.1| - 0.0049 17.0 6.8 56 4.3 0.0 7.4 8 0 0 8 8 7 0 PPR repeat YnfE PF17452.2 gi|386001554|ref|YP_005919853.1| - 0.0084 16.4 0.0 12 6.2 0.0 5.2 7 0 0 7 7 6 0 Uncharacterized YnfE-like DUF5113 PF17140.4 gi|386001554|ref|YP_005919853.1| - 0.0087 15.9 9.2 14 5.5 0.1 6.8 3 3 4 8 8 8 0 Domain of unknown function (DUF5113) Sel1 PF08238.12 gi|386001554|ref|YP_005919853.1| - 0.021 15.5 3.0 3.6 8.4 0.2 4.4 4 0 0 4 4 2 0 Sel1 repeat PvlArgDC PF01862.16 gi|386001554|ref|YP_005919853.1| - 0.023 14.5 7.4 36 4.1 0.0 6.5 8 0 0 8 8 7 0 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) TPR_21 PF09976.9 gi|386001554|ref|YP_005919853.1| - 0.048 13.4 14.1 16 5.2 0.1 6.6 2 2 4 6 6 6 0 Tetratricopeptide repeat-like domain DUF627 PF04781.12 gi|386001554|ref|YP_005919853.1| - 0.052 13.6 0.1 93 3.1 0.0 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF627) APP_E2 PF12925.7 gi|386001554|ref|YP_005919853.1| - 0.06 13.0 0.0 8.2 6.1 0.0 4.0 4 2 1 5 5 4 0 E2 domain of amyloid precursor protein Wzy_C_2 PF11846.8 gi|386001554|ref|YP_005919853.1| - 0.21 11.5 13.1 39 4.1 3.2 5.8 2 2 4 7 7 7 0 Virulence factor membrane-bound polymerase, C-terminal DUF3775 PF12616.8 gi|386001554|ref|YP_005919853.1| - 0.28 11.2 7.6 41 4.3 0.0 6.2 8 1 1 9 9 5 0 Protein of unknown function (DUF3775) Sda PF08970.10 gi|386001554|ref|YP_005919853.1| - 1.9 8.3 10.8 46 3.8 0.1 6.2 8 0 0 8 8 6 0 Sporulation inhibitor A SMG1 PF15785.5 gi|386001554|ref|YP_005919853.1| - 5.1 5.4 8.1 39 2.4 0.2 5.3 4 2 3 7 7 7 0 Serine/threonine-protein kinase smg-1 CTP_transf_like PF01467.26 gi|386001555|ref|YP_005919854.1| - 8.8e-17 61.6 0.0 1.1e-16 61.4 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|386001555|ref|YP_005919854.1| - 0.00022 21.2 0.1 0.00038 20.4 0.0 1.5 2 0 0 2 2 2 1 FAD synthetase PTS_IIB PF02302.17 gi|386001555|ref|YP_005919854.1| - 0.036 14.8 0.0 0.067 13.9 0.0 1.4 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit CTP_transf_like PF01467.26 gi|386001556|ref|YP_005919855.1| - 1.3e-19 70.9 0.0 1.5e-19 70.6 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like Prok-JAB PF14464.6 gi|386001557|ref|YP_005919856.1| - 6e-07 29.2 0.0 8.8e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|386001557|ref|YP_005919856.1| - 0.082 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain BPL_LplA_LipB PF03099.19 gi|386001558|ref|YP_005919857.1| - 4.3e-21 75.2 0.1 1.7e-20 73.3 0.0 1.9 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|386001558|ref|YP_005919857.1| - 7.1e-12 45.1 0.6 1.6e-11 44.0 0.1 1.8 2 0 0 2 2 2 1 HTH domain BPL_C PF02237.17 gi|386001558|ref|YP_005919857.1| - 1.1e-09 38.0 0.2 2.4e-09 36.9 0.2 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB_2 PF16917.5 gi|386001558|ref|YP_005919857.1| - 9.7e-05 22.0 0.1 0.00015 21.4 0.1 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_24 PF13412.6 gi|386001558|ref|YP_005919857.1| - 0.00023 20.6 0.0 0.00088 18.8 0.0 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|386001558|ref|YP_005919857.1| - 0.0054 16.6 1.1 0.12 12.3 0.0 2.6 2 0 0 2 2 2 1 MarR family GntR PF00392.21 gi|386001558|ref|YP_005919857.1| - 0.012 15.3 3.4 0.069 12.8 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|386001558|ref|YP_005919857.1| - 0.018 15.0 0.3 0.074 13.0 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|386001558|ref|YP_005919857.1| - 0.035 13.9 0.8 0.16 11.8 0.1 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain VbhA PF18495.1 gi|386001558|ref|YP_005919857.1| - 0.11 12.3 0.2 0.11 12.3 0.2 3.5 3 0 0 3 3 3 0 Antitoxin VbhA Fe_dep_repress PF01325.19 gi|386001558|ref|YP_005919857.1| - 0.15 12.3 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain CPSase_L_D2 PF02786.17 gi|386001559|ref|YP_005919858.1| - 1.1e-74 250.6 0.0 2.1e-74 249.6 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|386001559|ref|YP_005919858.1| - 1.7e-48 163.7 0.1 7.1e-48 161.7 0.1 2.1 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|386001559|ref|YP_005919858.1| - 2e-42 143.7 0.0 4.1e-42 142.7 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|386001559|ref|YP_005919858.1| - 8.1e-13 48.4 0.0 2e-12 47.1 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|386001559|ref|YP_005919858.1| - 4.1e-07 30.2 0.0 8.2e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|386001559|ref|YP_005919858.1| - 2.5e-05 23.9 0.0 5.5e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|386001559|ref|YP_005919858.1| - 8e-05 22.3 0.1 0.0091 15.6 0.0 2.6 3 0 0 3 3 3 1 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.6 gi|386001559|ref|YP_005919858.1| - 0.024 14.1 0.0 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 ATP-grasp domain OAD_gamma PF04277.13 gi|386001559|ref|YP_005919858.1| - 0.03 14.9 0.7 0.055 14.1 0.7 1.4 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain ATPgrasp_Ter PF15632.6 gi|386001559|ref|YP_005919858.1| - 0.031 14.0 0.0 0.19 11.5 0.0 2.0 2 0 0 2 2 2 0 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.6 gi|386001559|ref|YP_005919858.1| - 0.058 13.0 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain Pyridox_ox_2 PF12900.7 gi|386001560|ref|YP_005919859.1| - 4.3e-23 81.9 0.0 4.9e-23 81.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|386001560|ref|YP_005919859.1| - 4.9e-08 33.0 0.0 6.3e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase AAA PF00004.29 gi|386001561|ref|YP_005919860.1| - 1e-11 45.4 0.0 1.9e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|386001561|ref|YP_005919860.1| - 4.1e-06 26.6 0.0 1.9e-05 24.4 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|386001561|ref|YP_005919860.1| - 6.8e-06 26.6 0.4 0.0015 18.9 0.0 3.4 3 1 1 4 4 4 1 AAA ATPase domain AAA_22 PF13401.6 gi|386001561|ref|YP_005919860.1| - 3.8e-05 24.0 0.0 0.078 13.3 0.0 3.0 2 1 1 3 3 2 2 AAA domain Rad17 PF03215.15 gi|386001561|ref|YP_005919860.1| - 6e-05 23.1 0.0 9.7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|386001561|ref|YP_005919860.1| - 0.00017 21.4 3.3 0.00084 19.1 3.2 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|386001561|ref|YP_005919860.1| - 0.0002 21.1 0.0 0.0004 20.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|386001561|ref|YP_005919860.1| - 0.0011 18.6 4.3 0.017 14.7 0.1 3.2 2 2 1 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|386001561|ref|YP_005919860.1| - 0.0024 17.9 0.0 0.005 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|386001561|ref|YP_005919860.1| - 0.0032 17.8 0.1 0.0092 16.3 0.1 1.7 1 0 0 1 1 1 1 AAA C-terminal domain AAA_28 PF13521.6 gi|386001561|ref|YP_005919860.1| - 0.0061 16.8 0.1 0.77 10.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|386001561|ref|YP_005919860.1| - 0.0063 16.5 0.1 0.096 12.7 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) DNA_pol3_delta2 PF13177.6 gi|386001561|ref|YP_005919860.1| - 0.013 15.3 0.0 4.8 6.9 0.0 2.3 1 1 1 2 2 2 0 DNA polymerase III, delta subunit AAA_18 PF13238.6 gi|386001561|ref|YP_005919860.1| - 0.013 16.0 0.0 0.044 14.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain IPT PF01745.16 gi|386001561|ref|YP_005919860.1| - 0.032 13.6 0.0 0.06 12.7 0.0 1.4 1 1 0 1 1 1 0 Isopentenyl transferase AAA_6 PF12774.7 gi|386001561|ref|YP_005919860.1| - 0.035 13.1 0.0 0.081 11.9 0.0 1.5 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_24 PF13479.6 gi|386001561|ref|YP_005919860.1| - 0.053 13.2 0.0 0.092 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|386001561|ref|YP_005919860.1| - 0.059 12.6 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain PhoH PF02562.16 gi|386001561|ref|YP_005919860.1| - 0.072 12.5 0.3 0.92 8.9 0.1 2.3 1 1 1 2 2 2 0 PhoH-like protein RNA_helicase PF00910.22 gi|386001561|ref|YP_005919860.1| - 0.075 13.4 0.0 0.17 12.3 0.0 1.6 1 1 0 1 1 1 0 RNA helicase DEAD PF00270.29 gi|386001561|ref|YP_005919860.1| - 0.089 12.6 0.0 16 5.3 0.0 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase TsaE PF02367.17 gi|386001561|ref|YP_005919860.1| - 0.13 12.3 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|386001561|ref|YP_005919860.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|386001561|ref|YP_005919860.1| - 0.13 12.7 0.0 1.1 9.8 0.0 2.2 1 1 1 2 2 2 0 ABC transporter Sortilin-Vps10 PF15902.5 gi|386001562|ref|YP_005919861.1| - 1.6e-12 47.0 0.0 0.00086 18.2 0.0 3.1 1 1 1 3 3 3 3 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|386001562|ref|YP_005919861.1| - 1.2e-07 30.7 15.8 0.95 9.7 0.1 6.0 5 0 0 5 5 5 5 BNR/Asp-box repeat PSII_BNR PF14870.6 gi|386001562|ref|YP_005919861.1| - 5.6e-05 22.6 4.3 0.68 9.1 0.4 4.2 1 1 2 4 4 4 4 Photosynthesis system II assembly factor YCF48 ACP_syn_III_C PF08541.10 gi|386001562|ref|YP_005919861.1| - 0.09 13.0 0.0 1.2 9.3 0.0 2.7 2 1 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CAP PF00188.26 gi|386001563|ref|YP_005919862.1| - 1.4e-05 26.0 3.5 2.8e-05 24.9 2.2 2.1 2 1 0 2 2 2 1 Cysteine-rich secretory protein family AdoMet_Synthase PF01941.19 gi|386001564|ref|YP_005919863.1| - 5e-173 575.4 4.5 5.7e-173 575.2 4.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|386001564|ref|YP_005919863.1| - 0.097 13.4 0.1 0.55 11.0 0.0 2.4 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain ArsA_ATPase PF02374.15 gi|386001565|ref|YP_005919864.1| - 1.7e-67 227.8 0.0 1.9e-67 227.6 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|386001565|ref|YP_005919864.1| - 6.7e-08 32.7 0.0 1.3e-07 31.8 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|386001565|ref|YP_005919864.1| - 2e-06 27.9 0.0 8.2e-06 25.9 0.0 2.0 2 2 0 2 2 2 1 AAA domain ParA PF10609.9 gi|386001565|ref|YP_005919864.1| - 1.4e-05 24.7 0.5 0.031 13.7 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|386001565|ref|YP_005919864.1| - 0.0017 17.9 0.1 0.0091 15.5 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PEGA PF08308.11 gi|386001567|ref|YP_005919866.1| - 6.3e-09 35.6 0.0 1.5e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 PEGA domain Big_7 PF17957.1 gi|386001568|ref|YP_005919867.1| - 1.6e-07 32.0 0.6 0.3 11.9 0.0 4.7 4 0 0 4 4 4 2 Bacterial Ig domain Beta_helix PF13229.6 gi|386001568|ref|YP_005919867.1| - 0.00061 19.7 18.5 0.00061 19.7 18.5 2.5 2 0 0 2 2 2 1 Right handed beta helix region ChitinaseA_N PF08329.10 gi|386001568|ref|YP_005919867.1| - 0.01 15.5 0.1 0.44 10.2 0.0 2.8 2 0 0 2 2 2 0 Chitinase A, N-terminal domain Y_Y_Y PF07495.13 gi|386001568|ref|YP_005919867.1| - 0.019 14.9 2.7 0.35 10.8 0.1 3.7 4 0 0 4 4 4 0 Y_Y_Y domain HisG PF01634.18 gi|386001569|ref|YP_005919868.1| - 7e-45 152.8 0.0 9.8e-45 152.4 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|386001569|ref|YP_005919868.1| - 1.1e-24 86.3 0.5 1.1e-23 83.1 0.1 2.4 2 1 1 3 3 3 1 HisG, C-terminal domain Nitroreductase PF00881.24 gi|386001570|ref|YP_005919869.1| - 4.4e-29 101.7 0.2 9.6e-26 90.8 0.2 2.1 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|386001570|ref|YP_005919869.1| - 3.3e-05 23.5 0.0 0.46 10.0 0.2 2.7 2 1 1 3 3 3 3 Putative TM nitroreductase Radical_SAM_C PF16199.5 gi|386001571|ref|YP_005919870.1| - 7.3e-25 86.8 0.0 1.2e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|386001571|ref|YP_005919870.1| - 1.2e-18 68.0 0.0 2.2e-18 67.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|386001571|ref|YP_005919870.1| - 1.3e-07 31.8 0.2 2.8e-07 30.8 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|386001571|ref|YP_005919870.1| - 1.5e-06 28.2 0.0 4.7e-06 26.6 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|386001571|ref|YP_005919870.1| - 0.011 16.1 0.2 0.021 15.2 0.2 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF2627 PF11118.8 gi|386001572|ref|YP_005919871.1| - 0.34 11.5 4.0 12 6.6 0.3 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2627) Cpn60_TCP1 PF00118.24 gi|386001573|ref|YP_005919872.1| - 3.9e-166 553.5 18.8 4.5e-166 553.3 18.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family HA2 PF04408.23 gi|386001573|ref|YP_005919872.1| - 0.095 13.0 0.0 0.3 11.4 0.0 1.8 1 0 0 1 1 1 0 Helicase associated domain (HA2) Nitro_FeMo-Co PF02579.17 gi|386001573|ref|YP_005919872.1| - 0.1 12.9 0.8 0.7 10.3 0.1 2.6 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor baeRF_family10 PF18854.1 gi|386001573|ref|YP_005919872.1| - 0.17 12.1 2.3 8.6 6.6 0.3 3.5 2 1 1 3 3 3 0 Bacterial archaeo-eukaryotic release factor family 10 PrpR_N PF06506.11 gi|386001573|ref|YP_005919872.1| - 1.5 8.4 8.9 0.37 10.4 0.6 3.5 3 1 0 4 4 4 0 Propionate catabolism activator CHAT PF12770.7 gi|386001575|ref|YP_005919874.1| - 1.2e-11 44.6 0.1 4.2e-11 42.8 0.1 1.9 1 1 0 1 1 1 1 CHAT domain TPR_12 PF13424.6 gi|386001575|ref|YP_005919874.1| - 2.9e-05 24.3 14.7 0.2 12.0 0.1 6.6 4 2 2 7 7 7 3 Tetratricopeptide repeat AAA_16 PF13191.6 gi|386001575|ref|YP_005919874.1| - 0.0001 22.7 0.0 0.00093 19.6 0.1 2.7 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|386001575|ref|YP_005919874.1| - 0.0018 17.5 0.0 0.005 16.1 0.0 1.7 1 0 0 1 1 1 1 NB-ARC domain ANAPC3 PF12895.7 gi|386001575|ref|YP_005919874.1| - 0.0048 17.1 1.1 6.1 7.2 0.2 4.4 3 2 1 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|386001575|ref|YP_005919874.1| - 0.0065 16.3 9.6 1.3 9.0 0.2 5.8 6 0 0 6 6 5 2 Tetratricopeptide repeat AAA_22 PF13401.6 gi|386001575|ref|YP_005919874.1| - 0.0067 16.7 0.0 0.034 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain TPR_19 PF14559.6 gi|386001575|ref|YP_005919874.1| - 0.007 16.8 12.0 0.094 13.2 1.1 5.0 3 1 2 5 5 5 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|386001575|ref|YP_005919874.1| - 0.026 15.1 2.3 0.026 15.1 2.3 7.0 8 0 0 8 8 5 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001575|ref|YP_005919874.1| - 0.033 15.0 0.2 0.033 15.0 0.2 6.1 6 0 0 6 6 5 0 Tetratricopeptide repeat PhoH PF02562.16 gi|386001575|ref|YP_005919874.1| - 0.067 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA PF00004.29 gi|386001575|ref|YP_005919874.1| - 0.076 13.4 0.0 0.19 12.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TPR_16 PF13432.6 gi|386001575|ref|YP_005919874.1| - 0.18 12.5 0.1 0.18 12.5 0.1 5.3 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001575|ref|YP_005919874.1| - 0.26 11.4 9.8 21 5.4 0.0 5.8 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386001575|ref|YP_005919874.1| - 0.37 11.0 9.6 5.2 7.4 0.0 5.2 7 0 0 7 7 5 0 Tetratricopeptide repeat MacB_PCD PF12704.7 gi|386001577|ref|YP_005919876.1| - 3.6e-29 102.5 0.1 3.6e-29 102.5 0.1 1.9 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|386001577|ref|YP_005919876.1| - 1.3e-09 38.4 5.0 1.3e-09 38.4 5.0 2.6 3 0 0 3 3 3 1 FtsX-like permease family DUF3042 PF11240.8 gi|386001577|ref|YP_005919876.1| - 0.1 12.6 0.9 1.5 8.9 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) ABC_tran PF00005.27 gi|386001579|ref|YP_005919878.1| - 1e-30 107.0 0.0 1.4e-30 106.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001579|ref|YP_005919878.1| - 5e-10 39.7 0.0 4.9e-06 26.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|386001579|ref|YP_005919878.1| - 1.8e-07 30.9 0.0 0.00017 21.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|386001579|ref|YP_005919878.1| - 0.0023 17.9 0.0 0.0041 17.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|386001579|ref|YP_005919878.1| - 0.0055 16.4 0.0 0.0096 15.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|386001579|ref|YP_005919878.1| - 0.0082 16.3 0.3 0.12 12.6 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|386001579|ref|YP_005919878.1| - 0.0082 16.5 0.0 0.013 15.8 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|386001579|ref|YP_005919878.1| - 0.012 15.5 0.0 0.036 14.0 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|386001579|ref|YP_005919878.1| - 0.025 14.1 0.0 0.064 12.8 0.0 1.6 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|386001579|ref|YP_005919878.1| - 0.031 14.6 0.0 0.19 12.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|386001579|ref|YP_005919878.1| - 0.037 13.7 0.0 0.37 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|386001579|ref|YP_005919878.1| - 0.038 14.5 0.0 0.66 10.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|386001579|ref|YP_005919878.1| - 0.042 14.2 0.0 0.085 13.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.17 gi|386001579|ref|YP_005919878.1| - 0.049 13.4 0.0 0.9 9.2 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|386001579|ref|YP_005919878.1| - 0.051 13.3 0.0 0.32 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|386001579|ref|YP_005919878.1| - 0.056 13.4 0.0 9.2 6.1 0.0 2.4 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.6 gi|386001579|ref|YP_005919878.1| - 0.11 12.7 0.0 1.3 9.3 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|386001579|ref|YP_005919878.1| - 0.12 12.5 0.0 0.38 10.8 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase Ribosomal_L12_N PF16320.5 gi|386001582|ref|YP_005919881.1| - 0.22 11.3 0.3 0.22 11.3 0.3 6.0 4 1 2 6 6 6 0 Ribosomal protein L7/L12 dimerisation domain GnsAB_toxin PF08178.11 gi|386001582|ref|YP_005919881.1| - 0.73 9.8 12.8 2.1 8.3 0.8 2.4 2 0 0 2 2 2 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system Phage_TAC_7 PF10109.9 gi|386001582|ref|YP_005919881.1| - 2.2 8.5 4.5 56 3.9 2.9 3.6 2 1 1 3 3 3 0 Phage tail assembly chaperone proteins, E, or 41 or 14 DUF2482 PF10655.9 gi|386001582|ref|YP_005919881.1| - 2.5 8.7 9.4 1.1 9.8 0.6 3.2 2 1 1 3 3 3 0 Hypothetical protein of unknown function (DUF2482) bZIP_Maf PF03131.17 gi|386001582|ref|YP_005919881.1| - 4.5 7.8 9.5 11 6.6 1.6 3.3 3 1 0 3 3 3 0 bZIP Maf transcription factor Cation_efflux PF01545.21 gi|386001583|ref|YP_005919882.1| - 1.6e-45 155.3 6.0 1.9e-45 155.0 6.0 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|386001583|ref|YP_005919882.1| - 1.5e-24 85.9 3.8 2.4e-24 85.3 3.8 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter SUR7 PF06687.12 gi|386001583|ref|YP_005919882.1| - 0.067 12.8 0.0 0.15 11.6 0.0 1.6 1 1 0 1 1 1 0 SUR7/PalI family DUF418 PF04235.12 gi|386001583|ref|YP_005919882.1| - 0.16 11.9 2.7 1.2 9.0 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF418) DUF389 PF04087.14 gi|386001584|ref|YP_005919883.1| - 6.8e-31 107.2 14.9 6.8e-31 107.2 14.9 2.7 3 0 0 3 3 3 2 Domain of unknown function (DUF389) CorA PF01544.18 gi|386001585|ref|YP_005919884.1| - 3.4e-81 272.8 0.2 4.2e-81 272.5 0.2 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Hormone_recep PF00104.30 gi|386001585|ref|YP_005919884.1| - 0.14 11.7 0.1 0.23 11.0 0.1 1.3 1 0 0 1 1 1 0 Ligand-binding domain of nuclear hormone receptor T2SSF PF00482.23 gi|386001585|ref|YP_005919884.1| - 5.2 7.0 6.6 0.3 11.0 0.6 2.1 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein F MS_channel PF00924.18 gi|386001586|ref|YP_005919885.1| - 4.2e-30 104.8 5.8 4.2e-30 104.8 5.8 1.9 2 1 0 2 2 2 1 Mechanosensitive ion channel Phage_holin_5_2 PF16079.5 gi|386001586|ref|YP_005919885.1| - 0.048 14.0 1.8 0.13 12.6 0.8 2.1 2 0 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V Na_Ca_ex PF01699.24 gi|386001587|ref|YP_005919886.1| - 1.3e-48 164.8 40.9 4.1e-25 88.5 15.8 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF3593 PF12159.8 gi|386001587|ref|YP_005919886.1| - 0.34 11.0 5.4 1.3 9.1 0.1 3.4 2 1 2 4 4 4 0 Protein of unknown function (DUF3593) ABC2_membrane PF01061.24 gi|386001588|ref|YP_005919887.1| - 1.9e-39 135.3 21.3 2.4e-39 134.9 21.3 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|386001588|ref|YP_005919887.1| - 9.9e-15 54.5 22.2 9.9e-15 54.5 22.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|386001588|ref|YP_005919887.1| - 1.6e-08 34.2 16.1 2.1e-08 33.8 16.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|386001589|ref|YP_005919888.1| - 2.7e-33 115.4 0.0 4.2e-33 114.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001589|ref|YP_005919888.1| - 6.1e-13 49.2 0.9 8.6e-07 29.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|386001589|ref|YP_005919888.1| - 2.9e-09 37.5 0.0 5.6e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|386001589|ref|YP_005919888.1| - 1.4e-05 25.7 0.0 2.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|386001589|ref|YP_005919888.1| - 0.00018 21.2 0.1 0.00035 20.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|386001589|ref|YP_005919888.1| - 0.00032 20.5 0.0 0.0087 15.8 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|386001589|ref|YP_005919888.1| - 0.0014 18.1 0.0 0.0066 15.9 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|386001589|ref|YP_005919888.1| - 0.0045 17.4 0.1 0.061 13.7 0.1 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|386001589|ref|YP_005919888.1| - 0.0047 16.6 0.0 1.9 8.1 0.0 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|386001589|ref|YP_005919888.1| - 0.07 13.0 0.0 0.094 12.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain iPGM_N PF06415.13 gi|386001589|ref|YP_005919888.1| - 0.094 12.2 0.2 0.19 11.2 0.2 1.4 1 0 0 1 1 1 0 BPG-independent PGAM N-terminus (iPGM_N) AAA_16 PF13191.6 gi|386001589|ref|YP_005919888.1| - 0.098 13.0 0.2 0.3 11.5 0.1 1.9 2 1 0 2 2 2 0 AAA ATPase domain IGR PF09597.10 gi|386001589|ref|YP_005919888.1| - 0.14 12.3 0.0 0.35 11.0 0.0 1.6 1 0 0 1 1 1 0 IGR protein motif AAA_27 PF13514.6 gi|386001589|ref|YP_005919888.1| - 0.14 11.8 0.0 0.4 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Radical_SAM PF04055.21 gi|386001590|ref|YP_005919889.1| - 3.8e-12 46.9 1.8 2.1e-11 44.5 1.8 2.2 1 1 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|386001591|ref|YP_005919890.1| - 3.3e-15 56.9 0.1 3.5e-13 50.3 0.0 3.6 3 2 0 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|386001591|ref|YP_005919890.1| - 2.5e-13 50.1 0.0 5e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain Glucokinase PF02685.16 gi|386001592|ref|YP_005919891.1| - 2.4e-75 253.5 0.0 2.7e-75 253.3 0.0 1.0 1 0 0 1 1 1 1 Glucokinase HEAT_2 PF13646.6 gi|386001593|ref|YP_005919892.1| - 3.9e-127 415.0 67.9 3.6e-19 68.9 3.7 10.2 2 2 7 10 10 10 10 HEAT repeats HEAT_PBS PF03130.16 gi|386001593|ref|YP_005919892.1| - 1.7e-88 282.4 79.1 1.3e-07 31.6 0.1 19.7 19 1 1 20 20 20 17 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|386001593|ref|YP_005919892.1| - 1.4e-75 242.6 15.4 0.00014 21.9 0.0 18.9 19 0 0 19 19 19 15 HEAT repeat HEAT_EZ PF13513.6 gi|386001593|ref|YP_005919892.1| - 8.6e-40 134.7 56.1 0.00034 21.0 0.0 17.6 13 3 3 16 16 16 11 HEAT-like repeat Cnd1 PF12717.7 gi|386001593|ref|YP_005919892.1| - 6e-34 117.4 0.0 0.013 15.5 0.0 12.8 3 3 8 12 12 12 10 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|386001593|ref|YP_005919892.1| - 4.6e-31 105.9 13.7 0.012 15.7 0.0 13.9 11 3 4 15 15 15 8 Armadillo/beta-catenin-like repeat Aconitase_B_N PF11791.8 gi|386001593|ref|YP_005919892.1| - 2.1e-08 34.4 7.6 25 4.9 0.0 10.0 7 4 3 11 11 11 0 Aconitate B N-terminal domain Adaptin_N PF01602.20 gi|386001593|ref|YP_005919892.1| - 3.6e-08 32.4 0.0 2.1 6.8 0.0 6.5 3 3 3 7 7 7 3 Adaptin N terminal region Vac14_Fab1_bd PF12755.7 gi|386001593|ref|YP_005919892.1| - 3.8e-08 33.8 0.0 21 5.8 0.1 10.7 11 5 2 13 13 11 0 Vacuolar 14 Fab1-binding region RasGEF_N_2 PF14663.6 gi|386001593|ref|YP_005919892.1| - 2.2e-05 24.8 0.0 6.2 7.3 0.0 7.0 7 3 3 10 10 10 1 Rapamycin-insensitive companion of mTOR RasGEF_N domain IFRD PF05004.13 gi|386001593|ref|YP_005919892.1| - 0.00055 19.1 8.6 4.1 6.4 0.1 6.4 4 1 2 7 7 7 2 Interferon-related developmental regulator (IFRD) DUF4042 PF13251.6 gi|386001593|ref|YP_005919892.1| - 0.028 14.1 0.3 38 3.9 0.0 5.0 5 1 1 6 6 6 0 Domain of unknown function (DUF4042) CLASP_N PF12348.8 gi|386001593|ref|YP_005919892.1| - 0.048 13.2 0.7 12 5.4 0.1 5.0 6 0 0 6 6 6 0 CLASP N terminal Cohesin_HEAT PF12765.7 gi|386001593|ref|YP_005919892.1| - 0.12 12.6 10.9 36 4.8 0.0 7.6 9 0 0 9 9 9 0 HEAT repeat associated with sister chromatid cohesion Gag_p12 PF01141.18 gi|386001593|ref|YP_005919892.1| - 0.29 11.5 2.1 18 5.8 0.1 3.5 2 1 0 3 3 3 0 Gag polyprotein, inner coat protein p12 API5 PF05918.11 gi|386001593|ref|YP_005919892.1| - 3.2 6.5 3.3 58 2.3 0.0 4.0 5 1 1 6 6 6 0 Apoptosis inhibitory protein 5 (API5) AlbA_2 PF04326.14 gi|386001594|ref|YP_005919893.1| - 1.6e-13 51.1 0.0 2.2e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Putative DNA-binding domain DUF2582 PF10771.9 gi|386001596|ref|YP_005919895.1| - 2.9e-17 62.6 0.1 3e-17 62.5 0.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix domain (DUF2582) HTH_9 PF08221.11 gi|386001596|ref|YP_005919895.1| - 6.8e-05 22.9 0.0 7.7e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|386001596|ref|YP_005919895.1| - 0.0066 16.3 0.0 0.0086 15.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GNT-I PF03071.15 gi|386001596|ref|YP_005919895.1| - 0.16 10.7 0.0 0.16 10.7 0.0 1.0 1 0 0 1 1 1 0 GNT-I family adh_short_C2 PF13561.6 gi|386001597|ref|YP_005919896.1| - 6e-64 215.8 0.0 8.1e-64 215.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|386001597|ref|YP_005919896.1| - 3.2e-55 186.6 0.1 3.8e-55 186.4 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|386001597|ref|YP_005919896.1| - 2.7e-14 53.5 0.0 3.6e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 KR domain B5 PF03484.15 gi|386001598|ref|YP_005919897.1| - 0.057 13.7 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 tRNA synthetase B5 domain DNA_pol_B_exo1 PF03104.19 gi|386001598|ref|YP_005919897.1| - 0.061 12.5 0.1 0.096 11.8 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase family B, exonuclease domain AAA_22 PF13401.6 gi|386001598|ref|YP_005919897.1| - 0.11 12.8 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain MS_channel PF00924.18 gi|386001599|ref|YP_005919898.1| - 1.3e-36 126.1 0.0 1.3e-36 126.1 0.0 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel PhageMin_Tail PF10145.9 gi|386001599|ref|YP_005919898.1| - 0.0019 18.1 0.8 0.0019 18.1 0.8 1.9 3 0 0 3 3 3 1 Phage-related minor tail protein TM_helix PF05552.12 gi|386001599|ref|YP_005919898.1| - 0.26 11.3 2.0 1.8 8.6 0.4 2.8 3 0 0 3 3 3 0 Conserved TM helix DUF4268 PF14088.6 gi|386001600|ref|YP_005919899.1| - 3e-29 101.7 0.9 1.1e-28 99.8 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4268) NRho PF16733.5 gi|386001600|ref|YP_005919899.1| - 0.11 12.6 0.0 0.35 10.9 0.0 1.8 2 0 0 2 2 2 0 Rhomboid N-terminal domain HAD_2 PF13419.6 gi|386001601|ref|YP_005919900.1| - 5.2e-13 49.5 0.0 1.1e-12 48.5 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|386001601|ref|YP_005919900.1| - 7.1e-12 46.1 0.0 2.5e-10 41.0 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|386001601|ref|YP_005919900.1| - 5.4e-05 23.7 0.4 9.5e-05 22.9 0.4 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase 5_nucleotid PF05761.14 gi|386001601|ref|YP_005919900.1| - 0.025 13.5 0.1 0.91 8.3 0.0 2.1 2 0 0 2 2 2 0 5' nucleotidase family Hydrolase_3 PF08282.12 gi|386001601|ref|YP_005919900.1| - 0.047 13.4 0.0 6.1 6.5 0.0 2.3 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase T2SSG PF08334.11 gi|386001601|ref|YP_005919900.1| - 0.048 13.7 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein G Hydrolase_like PF13242.6 gi|386001601|ref|YP_005919900.1| - 0.14 12.2 0.0 0.42 10.7 0.0 1.8 1 1 0 1 1 1 0 HAD-hyrolase-like Zip PF02535.22 gi|386001602|ref|YP_005919901.1| - 3.6e-26 92.2 20.9 1.2e-21 77.3 7.8 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter TOM13 PF08219.11 gi|386001602|ref|YP_005919901.1| - 5.7 7.0 8.1 18 5.4 0.9 2.7 2 1 0 2 2 2 0 Outer membrane protein TOM13 AAA PF00004.29 gi|386001603|ref|YP_005919902.1| - 3.8e-96 318.6 0.0 3.8e-48 163.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|386001603|ref|YP_005919902.1| - 1.3e-29 101.7 1.3 1.5e-15 56.7 0.3 3.1 3 0 0 3 3 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|386001603|ref|YP_005919902.1| - 4.7e-22 78.0 0.3 3e-21 75.4 0.5 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|386001603|ref|YP_005919902.1| - 2e-15 56.9 0.0 1.8e-06 27.8 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|386001603|ref|YP_005919902.1| - 2.7e-15 57.2 0.2 1.8e-06 28.5 0.0 3.6 2 2 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|386001603|ref|YP_005919902.1| - 3.8e-13 49.0 0.1 1e-12 47.6 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.14 gi|386001603|ref|YP_005919902.1| - 1.6e-12 47.6 1.4 0.00011 22.3 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|386001603|ref|YP_005919902.1| - 4.7e-12 46.3 0.6 0.00039 20.7 0.1 4.1 2 2 1 3 3 3 2 AAA domain AAA_2 PF07724.14 gi|386001603|ref|YP_005919902.1| - 1.3e-11 44.9 0.0 5.2e-05 23.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|386001603|ref|YP_005919902.1| - 1.5e-11 44.1 0.0 0.00015 21.1 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|386001603|ref|YP_005919902.1| - 1.5e-09 38.2 0.0 0.00067 19.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|386001603|ref|YP_005919902.1| - 3.5e-09 36.8 0.0 0.00021 21.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|386001603|ref|YP_005919902.1| - 7.3e-08 32.3 0.0 0.015 15.1 0.0 2.6 3 0 0 3 3 2 2 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|386001603|ref|YP_005919902.1| - 1.3e-07 31.5 0.2 0.051 13.3 0.1 3.7 3 1 0 3 3 2 2 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|386001603|ref|YP_005919902.1| - 1.6e-07 31.7 0.0 0.035 14.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|386001603|ref|YP_005919902.1| - 1.6e-07 30.9 0.6 0.016 14.6 0.1 2.8 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|386001603|ref|YP_005919902.1| - 2.6e-07 31.2 0.0 0.059 13.9 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.6 gi|386001603|ref|YP_005919902.1| - 3.1e-07 30.8 0.1 0.038 14.2 0.0 2.8 3 0 0 3 3 2 2 AAA domain NACHT PF05729.12 gi|386001603|ref|YP_005919902.1| - 4.6e-07 29.9 0.0 0.073 13.0 0.0 3.7 3 1 1 4 4 4 2 NACHT domain AAA_25 PF13481.6 gi|386001603|ref|YP_005919902.1| - 6.3e-07 29.2 2.1 0.43 10.1 0.2 4.0 3 1 0 3 3 3 2 AAA domain ABC_tran PF00005.27 gi|386001603|ref|YP_005919902.1| - 2.2e-06 28.3 0.0 0.058 13.9 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_7 PF12775.7 gi|386001603|ref|YP_005919902.1| - 2.3e-06 27.3 0.0 0.041 13.4 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_24 PF13479.6 gi|386001603|ref|YP_005919902.1| - 3.1e-06 27.0 0.0 0.018 14.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|386001603|ref|YP_005919902.1| - 7.1e-06 26.0 0.0 0.13 12.3 0.0 3.0 3 0 0 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF815 PF05673.13 gi|386001603|ref|YP_005919902.1| - 1.6e-05 24.2 0.0 0.16 11.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATPase PF06745.13 gi|386001603|ref|YP_005919902.1| - 1.8e-05 24.2 0.0 0.31 10.4 0.0 3.1 3 0 0 3 3 3 2 KaiC NB-ARC PF00931.22 gi|386001603|ref|YP_005919902.1| - 3.9e-05 23.0 0.0 0.15 11.2 0.0 2.7 3 0 0 3 3 2 2 NB-ARC domain AAA_11 PF13086.6 gi|386001603|ref|YP_005919902.1| - 4.1e-05 23.5 0.0 0.19 11.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|386001603|ref|YP_005919902.1| - 9.4e-05 22.3 0.0 0.28 11.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|386001603|ref|YP_005919902.1| - 0.00011 21.8 0.3 0.34 10.3 0.1 2.4 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.17 gi|386001603|ref|YP_005919902.1| - 0.00013 21.2 0.0 0.36 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 gi|386001603|ref|YP_005919902.1| - 0.00013 21.3 0.1 0.29 10.4 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_30 PF13604.6 gi|386001603|ref|YP_005919902.1| - 0.00018 21.3 1.1 0.34 10.6 0.0 3.0 3 0 0 3 3 2 2 AAA domain DUF2075 PF09848.9 gi|386001603|ref|YP_005919902.1| - 0.00019 20.8 0.0 0.36 10.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|386001603|ref|YP_005919902.1| - 0.00023 21.5 0.1 2.1 8.6 0.0 3.4 3 0 0 3 3 3 1 AAA domain Sigma54_activ_2 PF14532.6 gi|386001603|ref|YP_005919902.1| - 0.00038 20.6 0.0 1.1 9.4 0.0 2.6 2 1 0 2 2 2 2 Sigma-54 interaction domain Guanylate_kin PF00625.21 gi|386001603|ref|YP_005919902.1| - 0.00054 19.7 0.3 6.2 6.5 0.0 4.4 2 2 2 4 4 4 0 Guanylate kinase ATPase_2 PF01637.18 gi|386001603|ref|YP_005919902.1| - 0.00064 19.7 0.0 2.9 7.8 0.0 3.4 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|386001603|ref|YP_005919902.1| - 0.0024 17.7 0.0 2 8.2 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein ATP-synt_ab PF00006.25 gi|386001603|ref|YP_005919902.1| - 0.0027 17.4 0.0 0.95 9.1 0.0 2.7 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AFG1_ATPase PF03969.16 gi|386001603|ref|YP_005919902.1| - 0.0028 16.6 0.0 0.45 9.4 0.0 2.3 2 0 0 2 2 2 1 AFG1-like ATPase Cytidylate_kin PF02224.18 gi|386001603|ref|YP_005919902.1| - 0.0034 17.1 0.2 1.8 8.2 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase AAA_17 PF13207.6 gi|386001603|ref|YP_005919902.1| - 0.0037 17.7 0.0 1.7 9.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|386001603|ref|YP_005919902.1| - 0.0049 16.3 0.0 1.5 8.2 0.0 2.9 2 0 0 2 2 2 1 Bacterial TniB protein Viral_helicase1 PF01443.18 gi|386001603|ref|YP_005919902.1| - 0.008 15.9 0.0 3.5 7.3 0.0 2.5 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|386001603|ref|YP_005919902.1| - 0.01 15.8 0.0 5.1 7.0 0.0 2.9 2 0 0 2 2 2 0 NTPase SKI PF01202.22 gi|386001603|ref|YP_005919902.1| - 0.031 14.4 0.1 11 6.1 0.0 2.8 3 0 0 3 3 2 0 Shikimate kinase ResIII PF04851.15 gi|386001603|ref|YP_005919902.1| - 0.038 14.0 0.0 5.4 7.0 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|386001603|ref|YP_005919902.1| - 0.045 13.5 0.0 19 5.1 0.0 2.8 3 0 0 3 3 2 0 P-loop containing region of AAA domain Torsin PF06309.11 gi|386001603|ref|YP_005919902.1| - 0.047 13.8 0.0 7.9 6.6 0.0 2.9 3 0 0 3 3 3 0 Torsin Vps4_C PF09336.10 gi|386001603|ref|YP_005919902.1| - 0.051 13.6 0.0 1.4 9.0 0.0 2.5 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain MCM PF00493.23 gi|386001603|ref|YP_005919902.1| - 0.052 12.6 0.0 9.3 5.3 0.0 3.1 4 0 0 4 4 4 0 MCM P-loop domain IPT PF01745.16 gi|386001603|ref|YP_005919902.1| - 0.08 12.3 0.2 37 3.6 0.0 3.2 3 0 0 3 3 3 0 Isopentenyl transferase T2SSE PF00437.20 gi|386001603|ref|YP_005919902.1| - 0.09 11.8 0.0 14 4.7 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Roc PF08477.13 gi|386001603|ref|YP_005919902.1| - 0.12 12.6 0.0 22 5.3 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|386001603|ref|YP_005919902.1| - 0.13 12.0 0.0 18 5.0 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Hydin_ADK PF17213.3 gi|386001603|ref|YP_005919902.1| - 0.15 12.3 0.2 10 6.3 0.0 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain cobW PF02492.19 gi|386001603|ref|YP_005919902.1| - 0.21 11.2 0.3 17 4.9 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GSDH PF07995.11 gi|386001604|ref|YP_005919903.1| - 7e-15 55.2 0.0 3.3e-14 53.0 0.0 2.1 2 1 0 2 2 2 1 Glucose / Sorbosone dehydrogenase SGL PF08450.12 gi|386001604|ref|YP_005919903.1| - 0.0015 18.2 0.0 0.01 15.5 0.0 2.2 2 1 0 2 2 2 1 SMP-30/Gluconolactonase/LRE-like region NHL PF01436.21 gi|386001604|ref|YP_005919903.1| - 0.0016 18.3 0.7 3.5 7.8 0.0 4.1 4 0 0 4 4 4 2 NHL repeat Thioredoxin PF00085.20 gi|386001606|ref|YP_005919905.1| - 1.6e-12 47.3 0.0 1.8e-12 47.1 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.11 gi|386001606|ref|YP_005919905.1| - 0.0064 16.4 0.2 0.0079 16.1 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_2 PF13098.6 gi|386001606|ref|YP_005919905.1| - 0.026 15.0 0.1 0.14 12.6 0.1 1.8 1 1 0 1 1 1 0 Thioredoxin-like domain TraF PF13728.6 gi|386001606|ref|YP_005919905.1| - 0.053 13.3 0.0 0.06 13.2 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein Radical_SAM PF04055.21 gi|386001607|ref|YP_005919906.1| - 7.6e-23 81.7 0.0 1e-21 78.0 0.0 2.5 2 1 1 3 3 3 1 Radical SAM superfamily AsnC_trans_reg2 PF17805.1 gi|386001607|ref|YP_005919906.1| - 5.3e-21 74.6 0.2 1.6e-20 73.1 0.0 1.9 2 0 0 2 2 2 1 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|386001607|ref|YP_005919906.1| - 1e-09 38.0 0.3 3.2e-09 36.5 0.3 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain SPASM PF13186.6 gi|386001607|ref|YP_005919906.1| - 8.5e-09 35.8 0.4 1.9e-08 34.7 0.4 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|386001607|ref|YP_005919906.1| - 2.6e-08 34.2 0.0 7.8e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|386001607|ref|YP_005919906.1| - 9e-06 25.8 0.0 2.9e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain cwf21 PF08312.12 gi|386001607|ref|YP_005919906.1| - 0.19 11.9 3.0 4.5 7.5 0.8 2.6 2 1 0 2 2 2 0 cwf21 domain Semialdhyde_dhC PF02774.18 gi|386001608|ref|YP_005919907.1| - 7.3e-37 127.2 0.0 1.5e-36 126.2 0.0 1.5 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|386001608|ref|YP_005919907.1| - 1.7e-25 89.8 0.0 2.6e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Voltage_CLC PF00654.20 gi|386001610|ref|YP_005919909.1| - 1.6e-73 248.0 41.1 1.6e-73 248.0 41.1 2.0 2 0 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.28 gi|386001610|ref|YP_005919909.1| - 6.8e-25 87.3 5.2 1.8e-12 47.5 0.1 2.9 3 0 0 3 3 3 2 CBS domain Voltage_CLC PF00654.20 gi|386001611|ref|YP_005919910.1| - 7.9e-79 265.5 40.4 7.2e-78 262.3 35.3 2.0 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|386001611|ref|YP_005919910.1| - 4e-24 84.8 4.0 2.6e-11 43.8 0.2 2.8 3 0 0 3 3 3 2 CBS domain DUF3021 PF11457.8 gi|386001611|ref|YP_005919910.1| - 1.6 9.1 10.4 1.1 9.6 4.9 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3021) VCBS PF13517.6 gi|386001612|ref|YP_005919911.1| - 5.7e-24 84.5 33.4 5.9e-07 30.0 2.1 4.8 1 1 4 5 5 5 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|386001612|ref|YP_005919911.1| - 9.3e-19 67.2 15.6 0.021 15.0 0.1 5.9 5 0 0 5 5 5 5 FG-GAP repeat DUF1926 PF09095.11 gi|386001612|ref|YP_005919911.1| - 9.8e-07 28.7 2.5 14 5.2 0.0 5.0 5 0 0 5 5 5 1 Domain of unknown function (DUF1926) BBS2_Mid PF14783.6 gi|386001612|ref|YP_005919911.1| - 1.5e-06 28.2 0.5 30 4.7 0.0 5.1 5 0 0 5 5 5 0 Ciliary BBSome complex subunit 2, middle region LolB PF03550.14 gi|386001612|ref|YP_005919911.1| - 2.2e-05 24.6 0.0 33 4.5 0.0 4.8 1 1 4 5 5 5 0 Outer membrane lipoprotein LolB TcdB_toxin_midN PF12256.8 gi|386001612|ref|YP_005919911.1| - 0.00026 20.4 10.9 13 5.1 0.1 5.1 1 1 3 5 5 5 3 Insecticide toxin TcdB middle/N-terminal region Trp_ring PF18669.1 gi|386001612|ref|YP_005919911.1| - 0.0081 16.3 0.1 25 5.1 0.0 5.1 5 1 0 5 5 5 0 Trimeric autotransporter adhesin Trp ring domain DUF2627 PF11118.8 gi|386001612|ref|YP_005919911.1| - 0.011 16.3 0.5 16 6.1 0.0 4.6 5 0 0 5 5 5 0 Protein of unknown function (DUF2627) CagY_I PF14585.6 gi|386001612|ref|YP_005919911.1| - 0.081 13.0 11.9 40 4.4 0.1 4.7 5 0 0 5 5 5 0 CagY type 1 repeat Agro_virD5 PF04730.12 gi|386001612|ref|YP_005919911.1| - 0.11 11.0 2.1 37 2.7 0.0 3.6 4 0 0 4 4 4 0 Agrobacterium VirD5 protein UBA PF00627.31 gi|386001612|ref|YP_005919911.1| - 0.15 12.0 13.2 28 4.8 0.2 4.3 4 0 0 4 4 4 0 UBA/TS-N domain Dockerin_1 PF00404.18 gi|386001612|ref|YP_005919911.1| - 0.9 9.8 16.5 34 4.7 0.2 4.7 5 0 0 5 5 5 0 Dockerin type I domain AMP-binding PF00501.28 gi|386001613|ref|YP_005919912.1| - 3.5e-111 371.8 0.0 4.1e-111 371.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|386001613|ref|YP_005919912.1| - 1e-17 64.9 0.0 2.4e-17 63.7 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PhnI PF05861.12 gi|386001613|ref|YP_005919912.1| - 0.11 11.3 0.0 2.4 6.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial phosphonate metabolism protein (PhnI) YL1_C PF08265.11 gi|386001613|ref|YP_005919912.1| - 0.63 9.9 2.3 8.2 6.3 0.0 3.2 3 0 0 3 3 3 0 YL1 nuclear protein C-terminal domain Fer4 PF00037.27 gi|386001614|ref|YP_005919913.1| - 1.2e-07 31.2 13.9 5.6e-06 25.9 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386001614|ref|YP_005919913.1| - 3.4e-07 30.0 9.7 0.00012 22.0 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|386001614|ref|YP_005919913.1| - 3.9e-06 26.9 9.0 7.4e-05 22.8 10.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386001614|ref|YP_005919913.1| - 2.4e-05 24.8 20.7 0.00069 20.2 10.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001614|ref|YP_005919913.1| - 4.8e-05 23.2 12.7 0.0015 18.5 3.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386001614|ref|YP_005919913.1| - 6.4e-05 23.8 9.7 0.00083 20.2 9.7 2.2 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|386001614|ref|YP_005919913.1| - 0.00027 21.3 2.8 0.11 12.9 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386001614|ref|YP_005919913.1| - 0.00028 21.0 9.9 0.0048 17.0 10.5 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386001614|ref|YP_005919913.1| - 0.00029 21.3 2.6 0.17 12.4 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386001614|ref|YP_005919913.1| - 0.015 15.7 13.2 0.053 14.0 1.6 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|386001614|ref|YP_005919913.1| - 0.038 14.9 17.6 0.29 12.2 5.9 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386001614|ref|YP_005919913.1| - 0.063 13.4 12.5 0.21 11.7 2.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386001614|ref|YP_005919913.1| - 0.29 11.9 3.7 0.47 11.2 1.5 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|386001614|ref|YP_005919913.1| - 0.72 10.1 10.2 2.2 8.5 2.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|386001614|ref|YP_005919913.1| - 1.1 10.1 5.0 3.2 8.7 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386001614|ref|YP_005919913.1| - 1.2 9.7 8.0 0.97 10.0 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I adh_short_C2 PF13561.6 gi|386001615|ref|YP_005919914.1| - 3.4e-59 200.2 0.0 4.2e-59 199.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|386001615|ref|YP_005919914.1| - 1.3e-51 174.9 0.0 1.5e-51 174.7 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|386001615|ref|YP_005919914.1| - 6e-11 42.6 0.0 8.9e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|386001615|ref|YP_005919914.1| - 0.00063 19.3 0.0 0.0018 17.8 0.0 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|386001615|ref|YP_005919914.1| - 0.00079 18.9 0.0 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|386001615|ref|YP_005919914.1| - 0.029 13.4 0.0 0.037 13.0 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family THF_DHG_CYH_C PF02882.19 gi|386001615|ref|YP_005919914.1| - 0.057 12.7 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Polysacc_synt_2 PF02719.15 gi|386001615|ref|YP_005919914.1| - 0.063 12.4 0.0 0.094 11.8 0.0 1.4 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_7 PF13241.6 gi|386001615|ref|YP_005919914.1| - 0.069 13.6 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Acetyltransf_1 PF00583.25 gi|386001616|ref|YP_005919915.1| - 1.7e-15 57.2 0.7 7.7e-15 55.2 0.1 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|386001616|ref|YP_005919915.1| - 8.6e-07 28.9 0.0 1.5e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|386001616|ref|YP_005919915.1| - 1.2e-06 28.4 0.0 2.2e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|386001616|ref|YP_005919915.1| - 2.9e-06 27.6 0.2 4e-05 24.0 0.1 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|386001616|ref|YP_005919915.1| - 3.7e-06 27.0 0.0 3.7e-05 23.8 0.1 2.5 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|386001616|ref|YP_005919915.1| - 9e-05 22.5 0.1 0.00017 21.7 0.1 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|386001616|ref|YP_005919915.1| - 0.001 19.2 0.0 0.0036 17.4 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|386001616|ref|YP_005919915.1| - 0.013 16.2 0.1 0.03 15.0 0.1 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MraZ PF02381.18 gi|386001617|ref|YP_005919916.1| - 0.0036 17.3 0.1 0.01 15.8 0.1 1.7 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like MazE_antitoxin PF04014.18 gi|386001617|ref|YP_005919916.1| - 0.0051 16.7 1.8 0.0056 16.6 0.2 1.9 3 0 0 3 3 3 1 Antidote-toxin recognition MazE, bacterial antitoxin AbrB-like PF14250.6 gi|386001617|ref|YP_005919916.1| - 0.043 13.9 0.0 0.14 12.2 0.0 1.7 2 0 0 2 2 2 0 AbrB-like transcriptional regulator ParE_toxin PF05016.15 gi|386001618|ref|YP_005919917.1| - 4.8e-08 33.5 0.9 5.5e-08 33.3 0.9 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|386001618|ref|YP_005919917.1| - 1.2e-06 28.3 0.0 1.7e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 ParE-like toxin of type II bacterial toxin-antitoxin system YoeB_toxin PF06769.14 gi|386001618|ref|YP_005919917.1| - 7.8e-06 25.8 0.3 1e-05 25.4 0.3 1.1 1 0 0 1 1 1 1 YoeB-like toxin of bacterial type II toxin-antitoxin system HigB-like_toxin PF05015.13 gi|386001618|ref|YP_005919917.1| - 0.022 15.2 0.1 0.032 14.6 0.1 1.4 1 1 0 1 1 1 0 RelE-like toxin of type II toxin-antitoxin system HigB YafQ_toxin PF15738.5 gi|386001618|ref|YP_005919917.1| - 0.04 14.2 4.3 0.13 12.6 4.3 1.8 1 1 0 1 1 1 0 Bacterial toxin of type II toxin-antitoxin system, YafQ Pentapeptide_3 PF13576.6 gi|386001619|ref|YP_005919918.1| - 6.3e-58 192.7 145.4 4.4e-08 33.2 3.4 10.9 1 1 12 13 13 13 13 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|386001619|ref|YP_005919918.1| - 3e-07 29.9 29.8 2.3 7.9 0.7 14.4 8 5 5 13 13 13 7 Pentapeptide repeats (8 copies) Ion_trans_2 PF07885.16 gi|386001619|ref|YP_005919918.1| - 7.4e-06 25.8 9.4 1.4e-05 24.9 9.4 1.5 1 0 0 1 1 1 1 Ion channel Pentapeptide_3 PF13576.6 gi|386001620|ref|YP_005919919.1| - 4.7e-26 90.7 81.7 1.1e-09 38.3 3.2 7.2 3 2 3 7 7 7 6 Pentapeptide repeats (9 copies) Prok-E2_D PF14460.6 gi|386001620|ref|YP_005919919.1| - 0.22 11.2 1.7 0.4 10.3 1.7 1.4 1 0 0 1 1 1 0 Prokaryotic E2 family D Ion_trans_2 PF07885.16 gi|386001620|ref|YP_005919919.1| - 0.25 11.4 16.3 2 8.4 14.8 2.8 1 1 1 2 2 2 0 Ion channel Pentapeptide PF00805.22 gi|386001620|ref|YP_005919919.1| - 6 6.6 35.0 2.3 7.9 0.6 9.8 6 3 3 9 9 9 0 Pentapeptide repeats (8 copies) IF-2B PF01008.17 gi|386001621|ref|YP_005919920.1| - 7.6e-81 271.4 0.0 8.9e-81 271.2 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Rib_5-P_isom_A PF06026.14 gi|386001622|ref|YP_005919921.1| - 1.8e-61 206.7 0.0 2.4e-61 206.3 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|386001622|ref|YP_005919921.1| - 6.5e-07 29.4 0.4 5.8e-05 23.1 0.0 2.3 1 1 1 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|386001622|ref|YP_005919921.1| - 0.081 12.0 0.1 0.12 11.5 0.1 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain tRNA-synt_2d PF01409.20 gi|386001623|ref|YP_005919922.1| - 3.9e-51 173.9 0.0 1.4e-48 165.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|386001623|ref|YP_005919922.1| - 6.9e-14 51.6 0.3 1.4e-13 50.6 0.3 1.6 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|386001623|ref|YP_005919922.1| - 4e-07 29.7 0.0 7.1e-05 22.4 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain Lambda_Bor PF06291.11 gi|386001623|ref|YP_005919922.1| - 0.12 12.4 0.1 0.3 11.1 0.1 1.6 1 0 0 1 1 1 0 Bor protein tRNA-synt_2 PF00152.20 gi|386001623|ref|YP_005919922.1| - 0.15 11.1 0.0 11 5.0 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.25 gi|386001623|ref|YP_005919922.1| - 0.17 11.9 0.0 0.38 10.7 0.0 1.6 1 1 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) MscS_porin PF12795.7 gi|386001624|ref|YP_005919923.1| - 0.0012 18.5 1.0 0.0012 18.5 1.0 2.7 2 0 0 2 2 2 1 Mechanosensitive ion channel porin domain Spc7 PF08317.11 gi|386001624|ref|YP_005919923.1| - 0.0069 15.3 12.3 0.029 13.2 1.3 2.7 2 1 1 3 3 3 3 Spc7 kinetochore protein JAKMIP_CC3 PF16034.5 gi|386001624|ref|YP_005919923.1| - 0.011 15.6 2.6 0.011 15.6 2.6 2.6 2 1 1 3 3 3 0 JAKMIP CC3 domain Atg14 PF10186.9 gi|386001624|ref|YP_005919923.1| - 0.016 14.3 13.2 0.06 12.4 3.0 2.4 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 FlxA PF14282.6 gi|386001624|ref|YP_005919923.1| - 0.023 14.7 1.3 0.79 9.7 0.0 3.0 2 1 0 2 2 2 0 FlxA-like protein AAA_13 PF13166.6 gi|386001624|ref|YP_005919923.1| - 0.19 10.3 3.9 1.4 7.4 0.6 2.1 2 0 0 2 2 2 0 AAA domain Fez1 PF06818.15 gi|386001624|ref|YP_005919923.1| - 0.67 10.4 17.0 0.78 10.2 3.3 2.7 1 1 1 3 3 3 0 Fez1 DivIC PF04977.15 gi|386001624|ref|YP_005919923.1| - 0.96 9.3 11.7 1 9.2 1.4 3.6 2 1 1 3 3 3 0 Septum formation initiator ATG16 PF08614.11 gi|386001624|ref|YP_005919923.1| - 1.1 9.5 19.2 0.46 10.7 3.7 3.0 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) ADIP PF11559.8 gi|386001624|ref|YP_005919923.1| - 2 8.5 9.1 0.59 10.2 0.8 2.7 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding UPF0242 PF06785.11 gi|386001624|ref|YP_005919923.1| - 2.6 8.1 9.5 8.3 6.5 1.8 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus TPR_MLP1_2 PF07926.12 gi|386001624|ref|YP_005919923.1| - 5.7 7.0 16.2 0.41 10.7 3.8 3.4 2 2 1 3 3 3 0 TPR/MLP1/MLP2-like protein Phlebovirus_NSM PF07246.11 gi|386001624|ref|YP_005919923.1| - 7.8 5.8 7.7 0.25 10.7 0.9 1.9 2 1 0 2 2 2 0 Phlebovirus nonstructural protein NS-M Phosphorylase PF00343.20 gi|386001625|ref|YP_005919924.1| - 1e-25 90.2 0.0 5.3e-19 68.0 0.0 3.1 3 0 0 3 3 3 2 Carbohydrate phosphorylase Glyco_transf_5 PF08323.11 gi|386001625|ref|YP_005919924.1| - 0.017 14.8 0.0 0.036 13.7 0.0 1.5 2 0 0 2 2 2 0 Starch synthase catalytic domain Met_10 PF02475.16 gi|386001626|ref|YP_005919925.1| - 2e-43 148.5 0.0 2.9e-43 147.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|386001626|ref|YP_005919925.1| - 0.00052 19.6 0.0 0.00092 18.8 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.11 gi|386001626|ref|YP_005919925.1| - 0.011 14.8 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase TPMT PF05724.11 gi|386001626|ref|YP_005919925.1| - 0.064 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_11 PF08241.12 gi|386001626|ref|YP_005919925.1| - 0.11 13.2 0.0 0.34 11.6 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386001626|ref|YP_005919925.1| - 0.14 12.9 0.0 0.32 11.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DJ-1_PfpI PF01965.24 gi|386001627|ref|YP_005919926.1| - 6e-48 162.8 0.2 7.6e-48 162.4 0.2 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|386001627|ref|YP_005919926.1| - 0.026 14.1 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CN_hydrolase PF00795.22 gi|386001628|ref|YP_005919927.1| - 4.9e-09 35.9 0.0 8.2e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase T3SchapCesA PF11439.8 gi|386001628|ref|YP_005919927.1| - 0.054 13.6 0.2 2 8.6 0.0 2.7 1 1 1 2 2 2 0 Type III secretion system filament chaperone CesA DUF4831 PF16115.5 gi|386001629|ref|YP_005919928.1| - 0.059 12.4 0.1 0.076 12.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4831) MnmE_helical PF12631.7 gi|386001629|ref|YP_005919928.1| - 0.5 10.5 2.5 0.69 10.0 2.5 1.3 1 1 0 1 1 1 0 MnmE helical domain PAS_4 PF08448.10 gi|386001630|ref|YP_005919929.1| - 1.4e-54 183.0 9.9 4.8e-13 49.3 0.0 6.7 7 1 0 7 7 7 5 PAS fold PAS_3 PF08447.12 gi|386001630|ref|YP_005919929.1| - 1e-39 134.7 2.6 3.2e-22 78.6 0.1 6.9 5 2 0 5 5 5 4 PAS fold PAS_9 PF13426.7 gi|386001630|ref|YP_005919929.1| - 1.6e-38 131.1 0.0 2.9e-09 37.1 0.0 5.9 5 0 0 5 5 5 4 PAS domain PAS PF00989.25 gi|386001630|ref|YP_005919929.1| - 6.9e-38 129.1 0.4 3e-10 40.1 0.0 7.2 6 2 0 6 6 6 5 PAS fold PAS_8 PF13188.7 gi|386001630|ref|YP_005919929.1| - 5.4e-28 96.5 0.8 3.3e-05 23.8 0.0 6.0 6 0 0 6 6 6 4 PAS domain Response_reg PF00072.24 gi|386001630|ref|YP_005919929.1| - 1e-23 83.6 0.0 2.3e-23 82.5 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|386001630|ref|YP_005919929.1| - 3.2e-11 43.7 0.2 1.3e-10 41.8 0.1 2.1 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|386001630|ref|YP_005919929.1| - 3.6e-07 30.3 1.1 0.55 10.4 0.0 6.7 8 0 0 8 8 6 2 PAS fold MLTR_LBD PF17765.1 gi|386001630|ref|YP_005919929.1| - 1.1e-06 28.8 0.0 0.58 10.3 0.0 4.0 3 0 0 3 3 3 2 MmyB-like transcription regulator ligand binding domain PAS_10 PF13596.6 gi|386001630|ref|YP_005919929.1| - 5.2e-05 23.8 0.0 4.5 7.9 0.0 4.3 4 1 0 4 4 3 2 PAS domain HisKA PF00512.25 gi|386001630|ref|YP_005919929.1| - 0.00045 20.2 0.3 0.0046 17.0 0.1 2.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain dCache_1 PF02743.18 gi|386001630|ref|YP_005919929.1| - 0.0071 16.2 0.1 5 6.8 0.0 2.9 3 0 0 3 3 3 2 Cache domain PAS_11 PF14598.6 gi|386001630|ref|YP_005919929.1| - 0.017 15.2 0.0 0.056 13.6 0.0 1.8 1 0 0 1 1 1 0 PAS domain SPOB_a PF14689.6 gi|386001630|ref|YP_005919929.1| - 0.025 14.3 0.1 0.081 12.6 0.1 1.9 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF2064 PF09837.9 gi|386001631|ref|YP_005919930.1| - 0.014 15.2 18.9 4.4 7.2 0.0 5.9 6 0 0 6 6 6 0 Uncharacterized protein conserved in bacteria (DUF2064) DUF4166 PF13761.6 gi|386001632|ref|YP_005919931.1| - 0.00064 19.6 0.2 6.6 6.5 0.1 3.4 3 0 0 3 3 3 3 Domain of unknown function (DUF4166) HTH_3 PF01381.22 gi|386001633|ref|YP_005919932.1| - 1.6e-16 60.1 0.0 1.9e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|386001633|ref|YP_005919932.1| - 5.4e-10 39.2 0.1 6.1e-10 39.0 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|386001633|ref|YP_005919932.1| - 8.3e-06 26.1 0.0 1.2e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|386001633|ref|YP_005919932.1| - 1.2e-05 25.7 0.0 1.3e-05 25.5 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.16 gi|386001633|ref|YP_005919932.1| - 0.00035 20.0 0.0 0.0007 19.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|386001633|ref|YP_005919932.1| - 0.00061 19.7 0.0 0.00098 19.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|386001633|ref|YP_005919932.1| - 0.00097 19.1 0.0 0.0018 18.2 0.0 1.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|386001633|ref|YP_005919932.1| - 0.0019 17.8 0.0 0.043 13.5 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 MerR PF00376.23 gi|386001633|ref|YP_005919932.1| - 0.0037 17.0 0.0 0.5 10.2 0.0 2.2 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 gi|386001633|ref|YP_005919932.1| - 0.004 17.2 0.0 1.8 8.7 0.0 2.2 2 0 0 2 2 2 2 MerR HTH family regulatory protein HTH_25 PF13413.6 gi|386001633|ref|YP_005919932.1| - 0.0067 16.3 0.0 0.0098 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|386001633|ref|YP_005919932.1| - 0.02 14.7 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 gi|386001633|ref|YP_005919932.1| - 0.024 14.2 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 gi|386001633|ref|YP_005919932.1| - 0.036 13.9 0.0 0.056 13.3 0.0 1.5 1 1 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Phage_CI_repr PF07022.13 gi|386001633|ref|YP_005919932.1| - 0.066 13.3 0.0 0.087 12.9 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain MarR_2 PF12802.7 gi|386001633|ref|YP_005919932.1| - 0.097 12.6 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_17 PF12728.7 gi|386001633|ref|YP_005919932.1| - 0.14 12.3 0.0 0.35 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|386001633|ref|YP_005919932.1| - 0.16 11.8 0.1 0.35 10.7 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2178 PF09946.9 gi|386001634|ref|YP_005919933.1| - 1.5e-28 99.0 4.4 1.7e-28 98.9 4.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF3796 PF12676.7 gi|386001634|ref|YP_005919933.1| - 0.033 14.6 0.2 0.04 14.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3796) TPR_11 PF13414.6 gi|386001635|ref|YP_005919934.1| - 4.2e-25 87.2 18.5 1.8e-06 27.5 0.5 7.2 6 1 1 7 7 7 5 TPR repeat TPR_16 PF13432.6 gi|386001635|ref|YP_005919934.1| - 4.3e-23 81.7 51.2 2.1e-06 28.3 1.3 6.6 4 1 2 6 6 6 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|386001635|ref|YP_005919934.1| - 2.6e-21 74.5 22.6 0.0016 18.2 0.1 8.9 8 1 1 9 9 9 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386001635|ref|YP_005919934.1| - 2.2e-20 71.1 14.2 0.00056 19.9 0.1 8.2 9 0 0 9 9 8 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386001635|ref|YP_005919934.1| - 2.4e-19 67.8 33.8 0.00014 21.7 0.1 9.5 9 1 1 10 10 10 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001635|ref|YP_005919934.1| - 1.6e-17 62.7 39.0 0.00079 20.1 0.9 7.8 3 3 4 7 7 7 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386001635|ref|YP_005919934.1| - 1.6e-16 59.4 2.4 0.086 13.3 0.0 7.5 6 2 1 7 7 7 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386001635|ref|YP_005919934.1| - 9.5e-13 48.5 32.5 0.0005 20.5 5.5 5.5 3 2 4 7 7 7 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386001635|ref|YP_005919934.1| - 1.6e-12 47.5 29.1 0.00035 20.8 1.0 5.5 4 2 0 5 5 5 3 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|386001635|ref|YP_005919934.1| - 1.2e-06 29.1 1.5 0.012 16.1 0.0 3.2 3 0 0 3 3 3 2 Alkyl sulfatase dimerisation TPR_6 PF13174.6 gi|386001635|ref|YP_005919934.1| - 1.8e-05 25.0 14.9 2.5 8.9 0.2 6.4 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001635|ref|YP_005919934.1| - 0.00019 21.5 26.8 0.0012 19.0 3.1 5.7 4 2 1 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386001635|ref|YP_005919934.1| - 0.00021 21.0 0.6 0.00021 21.0 0.6 6.1 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001635|ref|YP_005919934.1| - 0.0013 18.6 24.2 0.38 10.9 0.2 6.9 7 1 0 7 7 7 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|386001635|ref|YP_005919934.1| - 0.0016 17.5 0.4 2.5 6.9 0.0 3.8 4 0 0 4 4 4 1 NMDA receptor-regulated protein 1 SNAP PF14938.6 gi|386001635|ref|YP_005919934.1| - 0.0041 16.6 9.3 0.33 10.3 2.7 3.1 2 1 1 3 3 3 2 Soluble NSF attachment protein, SNAP TPR_4 PF07721.14 gi|386001635|ref|YP_005919934.1| - 0.08 13.6 2.2 0.08 13.6 2.2 6.9 7 0 0 7 7 5 0 Tetratricopeptide repeat Exonuc_VII_S PF02609.16 gi|386001635|ref|YP_005919934.1| - 0.096 12.8 4.1 2.4 8.3 0.1 4.1 4 0 0 4 4 4 0 Exonuclease VII small subunit DUF3856 PF12968.7 gi|386001635|ref|YP_005919934.1| - 0.4 10.7 10.5 1.9 8.6 2.8 3.7 2 1 3 5 5 5 0 Domain of Unknown Function (DUF3856) Wzy_C_2 PF11846.8 gi|386001635|ref|YP_005919934.1| - 1.7 8.5 5.5 11 5.9 0.2 3.5 3 1 0 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal TPR_2 PF07719.17 gi|386001636|ref|YP_005919935.1| - 8.3e-42 138.0 25.4 1.8e-05 24.5 0.1 11.1 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_1 PF00515.28 gi|386001636|ref|YP_005919935.1| - 4.5e-39 130.7 22.1 7.1e-05 22.5 0.0 10.9 11 0 0 11 11 11 8 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386001636|ref|YP_005919935.1| - 5.5e-35 119.7 32.2 2.2e-11 44.2 0.1 8.1 3 2 5 8 8 8 8 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386001636|ref|YP_005919935.1| - 1.8e-34 117.1 19.2 7.3e-08 32.0 0.0 10.1 6 3 4 10 10 10 7 TPR repeat TPR_8 PF13181.6 gi|386001636|ref|YP_005919935.1| - 5.3e-27 91.7 11.4 0.00076 19.5 0.0 10.9 11 0 0 11 11 11 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386001636|ref|YP_005919935.1| - 2.1e-22 79.2 28.0 1.5e-08 34.8 0.3 8.2 3 2 6 9 9 9 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386001636|ref|YP_005919935.1| - 5.4e-21 74.9 22.2 7.3e-06 26.4 0.0 6.9 4 2 2 7 7 7 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001636|ref|YP_005919935.1| - 8.1e-21 73.0 34.4 0.0029 18.3 0.0 11.0 5 3 6 11 11 11 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386001636|ref|YP_005919935.1| - 7e-16 57.4 9.1 0.0051 17.1 0.1 9.2 8 2 0 9 9 8 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001636|ref|YP_005919935.1| - 2.8e-15 56.2 18.9 1.7e-06 28.1 0.0 6.4 4 3 3 7 7 7 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386001636|ref|YP_005919935.1| - 2.1e-09 37.5 2.2 0.21 11.8 0.0 5.4 4 2 1 5 5 5 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|386001636|ref|YP_005919935.1| - 7.8e-08 31.8 18.8 0.15 12.1 0.0 9.0 11 0 0 11 11 9 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|386001636|ref|YP_005919935.1| - 3.4e-07 30.2 7.0 2.4 8.3 0.0 6.2 7 0 0 7 7 6 3 Fis1 C-terminal tetratricopeptide repeat TPR_6 PF13174.6 gi|386001636|ref|YP_005919935.1| - 4e-07 30.3 26.0 2 9.2 0.0 9.5 10 1 0 10 10 10 2 Tetratricopeptide repeat DUF3856 PF12968.7 gi|386001636|ref|YP_005919935.1| - 1.3e-05 25.3 10.7 0.012 15.7 0.2 6.6 4 2 2 6 6 6 1 Domain of Unknown Function (DUF3856) TPR_21 PF09976.9 gi|386001636|ref|YP_005919935.1| - 0.00089 19.0 16.3 2.4 7.9 0.0 6.0 2 2 3 5 5 5 1 Tetratricopeptide repeat-like domain TAD2 PF18521.1 gi|386001636|ref|YP_005919935.1| - 0.0011 18.9 0.2 1.8 8.7 0.0 3.0 2 0 0 2 2 2 1 Transactivation domain 2 TPR_3 PF07720.12 gi|386001636|ref|YP_005919935.1| - 0.0013 18.7 10.5 0.56 10.3 0.0 5.8 6 0 0 6 6 5 2 Tetratricopeptide repeat MIT PF04212.18 gi|386001636|ref|YP_005919935.1| - 0.005 16.9 12.0 1.2 9.2 0.3 5.8 7 0 0 7 7 6 1 MIT (microtubule interacting and transport) domain TPR_MalT PF17874.1 gi|386001636|ref|YP_005919935.1| - 0.0051 16.2 0.5 0.38 10.1 0.0 3.2 3 1 0 4 4 4 1 MalT-like TPR region BTAD PF03704.17 gi|386001636|ref|YP_005919935.1| - 0.0059 17.1 17.4 0.76 10.2 0.0 5.8 4 2 2 6 6 5 2 Bacterial transcriptional activator domain NARP1 PF12569.8 gi|386001636|ref|YP_005919935.1| - 0.0086 15.0 0.0 4.9 5.9 0.0 3.8 3 1 1 4 4 4 1 NMDA receptor-regulated protein 1 TPR_10 PF13374.6 gi|386001636|ref|YP_005919935.1| - 0.011 15.6 28.4 0.15 12.0 0.0 8.2 10 0 0 10 10 8 0 Tetratricopeptide repeat TPR_20 PF14561.6 gi|386001636|ref|YP_005919935.1| - 0.037 14.3 8.8 3 8.3 0.0 4.8 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_4 PF07721.14 gi|386001636|ref|YP_005919935.1| - 0.061 14.0 24.6 1.7 9.5 0.3 6.2 6 0 0 6 6 5 0 Tetratricopeptide repeat DUF1510 PF07423.11 gi|386001636|ref|YP_005919935.1| - 0.071 13.3 0.2 93 3.3 0.0 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF1510) Alkyl_sulf_dimr PF14863.6 gi|386001636|ref|YP_005919935.1| - 0.13 12.7 2.5 6.4 7.2 0.1 3.0 3 0 0 3 3 3 0 Alkyl sulfatase dimerisation ChAPs PF09295.10 gi|386001636|ref|YP_005919935.1| - 0.2 10.6 0.1 2.1 7.3 0.0 2.3 2 1 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_1 PF00515.28 gi|386001637|ref|YP_005919936.1| - 1.6e-70 230.3 16.4 1.3e-06 28.0 0.0 14.2 14 0 0 14 14 14 11 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386001637|ref|YP_005919936.1| - 8.1e-66 212.9 21.8 1.9e-06 27.6 0.1 13.6 13 0 0 13 13 13 12 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386001637|ref|YP_005919936.1| - 2.8e-54 176.8 10.9 0.001 19.1 0.0 13.0 13 0 0 13 13 13 11 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386001637|ref|YP_005919936.1| - 1.1e-50 169.1 21.8 5.1e-07 29.3 0.3 11.4 9 2 2 11 11 11 9 TPR repeat TPR_17 PF13431.6 gi|386001637|ref|YP_005919936.1| - 1.9e-45 150.0 4.4 0.00029 21.0 0.0 13.0 13 0 0 13 13 13 8 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386001637|ref|YP_005919936.1| - 2.3e-44 149.8 26.0 2.5e-10 40.8 0.4 8.0 6 2 2 8 8 8 8 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001637|ref|YP_005919936.1| - 1e-39 131.8 37.5 0.00038 21.0 0.2 12.4 5 4 7 12 12 12 9 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386001637|ref|YP_005919936.1| - 3.9e-39 132.8 25.3 4.4e-09 36.5 0.5 9.1 6 3 2 8 8 8 8 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386001637|ref|YP_005919936.1| - 3.8e-33 113.8 18.9 1.3e-05 25.6 0.0 8.4 4 3 4 9 9 9 9 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001637|ref|YP_005919936.1| - 2.4e-27 94.9 25.1 4e-08 33.3 0.4 8.3 6 2 2 8 8 8 6 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001637|ref|YP_005919936.1| - 4.4e-17 60.8 20.4 0.54 10.4 0.0 11.2 12 0 0 12 12 10 6 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386001637|ref|YP_005919936.1| - 7.5e-17 60.6 32.7 0.54 10.2 0.1 11.1 11 0 0 11 11 11 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386001637|ref|YP_005919936.1| - 4.5e-15 55.2 19.7 0.37 11.5 0.0 11.5 13 0 0 13 13 11 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386001637|ref|YP_005919936.1| - 2.5e-12 46.8 0.8 0.003 17.8 0.0 5.5 2 2 4 6 6 6 3 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.7 gi|386001637|ref|YP_005919936.1| - 4.9e-12 46.1 16.0 0.01 15.9 0.1 8.5 1 1 6 7 7 7 3 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|386001637|ref|YP_005919936.1| - 6.3e-12 45.2 3.3 0.0021 17.1 0.0 6.3 1 1 5 7 7 7 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.6 gi|386001637|ref|YP_005919936.1| - 1.3e-11 44.4 1.4 0.035 14.2 0.0 5.8 6 0 0 6 6 5 3 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.17 gi|386001637|ref|YP_005919936.1| - 6.8e-10 39.6 20.7 0.0038 17.7 0.0 7.0 3 2 4 7 7 5 3 Bacterial transcriptional activator domain TPR_MalT PF17874.1 gi|386001637|ref|YP_005919936.1| - 6.7e-09 35.6 2.2 4.7e-06 26.2 0.4 3.8 2 1 1 4 4 4 1 MalT-like TPR region TPR_21 PF09976.9 gi|386001637|ref|YP_005919936.1| - 4.9e-07 29.7 14.8 0.4 10.4 0.1 6.2 2 2 3 6 6 6 2 Tetratricopeptide repeat-like domain Coatomer_E PF04733.14 gi|386001637|ref|YP_005919936.1| - 9.5e-07 28.5 0.1 0.1 12.0 0.0 4.2 2 1 2 4 4 4 1 Coatomer epsilon subunit HTH_Bact PF18768.1 gi|386001637|ref|YP_005919936.1| - 2.5e-06 27.0 1.9 14 5.3 0.0 7.4 9 0 0 9 9 7 0 Helix-turn-helix bacterial domain SRP_TPR_like PF17004.5 gi|386001637|ref|YP_005919936.1| - 0.00012 22.1 0.1 22 5.1 0.0 4.8 2 1 0 3 3 3 0 Putative TPR-like repeat TPR_4 PF07721.14 gi|386001637|ref|YP_005919936.1| - 0.0014 19.0 23.6 3.1 8.7 0.0 9.2 10 0 0 10 10 9 1 Tetratricopeptide repeat FAT PF02259.23 gi|386001637|ref|YP_005919936.1| - 0.0035 16.6 2.8 1.5 8.0 0.1 3.8 3 1 1 4 4 4 1 FAT domain ANAPC5 PF12862.7 gi|386001637|ref|YP_005919936.1| - 0.012 15.6 10.4 66 3.7 0.0 7.8 6 2 5 11 11 9 0 Anaphase-promoting complex subunit 5 RNR_N PF08343.10 gi|386001637|ref|YP_005919936.1| - 0.017 15.1 0.0 0.069 13.2 0.0 2.0 2 0 0 2 2 1 0 Ribonucleotide reductase N-terminal MIT PF04212.18 gi|386001637|ref|YP_005919936.1| - 0.017 15.1 15.9 31 4.7 0.1 7.5 9 0 0 9 9 8 0 MIT (microtubule interacting and transport) domain TPR_3 PF07720.12 gi|386001637|ref|YP_005919936.1| - 0.02 14.9 1.3 1.8 8.6 0.0 4.1 5 0 0 5 5 3 0 Tetratricopeptide repeat TPR_20 PF14561.6 gi|386001637|ref|YP_005919936.1| - 0.049 14.0 4.0 9.2 6.7 0.1 4.7 3 1 2 6 6 4 0 Tetratricopeptide repeat DUF5588 PF17826.1 gi|386001637|ref|YP_005919936.1| - 0.077 11.9 0.0 15 4.3 0.0 3.0 2 1 2 4 4 4 0 Family of unknown function (DUF5588) DUF5113 PF17140.4 gi|386001637|ref|YP_005919936.1| - 0.16 11.8 0.8 33 4.2 0.0 4.5 5 0 0 5 5 5 0 Domain of unknown function (DUF5113) RPN7 PF10602.9 gi|386001637|ref|YP_005919936.1| - 0.16 11.7 4.9 30 4.3 0.0 4.8 4 2 2 6 6 6 0 26S proteasome subunit RPN7 DUF1896 PF08989.10 gi|386001637|ref|YP_005919936.1| - 1.2 9.2 2.9 72 3.5 0.0 3.8 4 1 0 4 4 3 0 Domain of unknown function (DUF1896) TPR_1 PF00515.28 gi|386001638|ref|YP_005919937.1| - 6e-36 120.8 20.8 1.9e-10 40.1 0.3 7.7 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386001638|ref|YP_005919937.1| - 8.2e-33 109.9 30.1 1.3e-09 37.4 0.4 8.1 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386001638|ref|YP_005919937.1| - 4.2e-26 88.9 18.8 2.4e-06 27.3 0.2 7.9 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386001638|ref|YP_005919937.1| - 2.5e-25 88.8 35.6 7.8e-11 42.4 0.1 6.0 3 2 3 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001638|ref|YP_005919937.1| - 2.9e-24 83.7 32.8 0.00012 22.6 0.1 8.1 4 2 4 8 8 8 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386001638|ref|YP_005919937.1| - 1.4e-23 82.9 41.6 1.1e-06 28.8 0.4 6.3 3 3 3 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386001638|ref|YP_005919937.1| - 1.6e-22 78.9 21.6 3.4e-07 29.8 0.3 7.3 7 2 1 8 8 7 5 TPR repeat TPR_19 PF14559.6 gi|386001638|ref|YP_005919937.1| - 7.2e-17 61.7 24.0 2.7e-08 34.2 0.5 5.3 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386001638|ref|YP_005919937.1| - 7.6e-17 60.4 5.2 1.8e-07 31.1 0.1 7.0 7 2 0 7 7 6 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001638|ref|YP_005919937.1| - 3.7e-11 42.2 18.9 0.008 16.1 0.1 7.5 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386001638|ref|YP_005919937.1| - 3.3e-10 39.5 28.1 0.0083 16.0 0.0 7.5 8 0 0 8 8 7 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386001638|ref|YP_005919937.1| - 3.4e-10 40.0 2.7 1.5e-06 28.3 0.0 3.7 2 2 1 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.7 gi|386001638|ref|YP_005919937.1| - 3.1e-09 37.0 13.8 0.00058 19.9 0.1 4.8 2 2 2 5 5 5 2 Domain of Unknown Function (DUF3856) TPR_6 PF13174.6 gi|386001638|ref|YP_005919937.1| - 5.4e-09 36.1 21.1 0.053 14.2 0.1 7.9 8 0 0 8 8 8 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|386001638|ref|YP_005919937.1| - 1e-07 31.3 7.9 4e-05 22.7 0.2 4.2 2 2 3 5 5 5 1 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|386001638|ref|YP_005919937.1| - 2.2e-07 31.4 18.2 0.008 16.6 0.1 4.3 1 1 2 3 3 3 2 Bacterial transcriptional activator domain TPR_9 PF13371.6 gi|386001638|ref|YP_005919937.1| - 2.7e-07 30.6 18.3 4.4e-05 23.5 0.2 5.1 3 2 2 5 5 4 3 Tetratricopeptide repeat TPR_15 PF13429.6 gi|386001638|ref|YP_005919937.1| - 2.2e-05 23.8 10.6 0.0017 17.6 0.7 3.2 1 1 2 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|386001638|ref|YP_005919937.1| - 0.00076 19.5 0.4 3.2 7.9 0.1 3.5 2 1 1 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|386001638|ref|YP_005919937.1| - 0.0012 19.3 3.9 0.87 10.0 0.0 3.8 2 2 1 3 3 3 2 Alkyl sulfatase dimerisation TPR_20 PF14561.6 gi|386001638|ref|YP_005919937.1| - 0.0013 19.0 7.3 0.06 13.7 0.1 3.8 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|386001638|ref|YP_005919937.1| - 0.0038 17.7 23.2 2.7 8.9 0.0 6.7 6 1 0 6 6 6 1 Tetratricopeptide repeat MAS20 PF02064.15 gi|386001638|ref|YP_005919937.1| - 0.0043 17.1 0.7 2.1 8.4 0.0 4.1 4 2 1 5 5 5 1 MAS20 protein import receptor TPR_21 PF09976.9 gi|386001638|ref|YP_005919937.1| - 0.011 15.5 19.2 0.13 12.0 0.6 5.4 2 2 3 5 5 5 0 Tetratricopeptide repeat-like domain TPR_5 PF12688.7 gi|386001638|ref|YP_005919937.1| - 0.011 16.0 4.9 0.24 11.6 0.0 4.0 2 2 0 3 3 3 0 Tetratrico peptide repeat FAT PF02259.23 gi|386001638|ref|YP_005919937.1| - 0.014 14.7 1.3 1.5 8.0 1.2 2.7 1 1 1 2 2 2 0 FAT domain DUF5113 PF17140.4 gi|386001638|ref|YP_005919937.1| - 0.019 14.7 1.4 6.3 6.6 0.1 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF5113) NRBF2_MIT PF17169.4 gi|386001638|ref|YP_005919937.1| - 0.02 15.1 4.3 16 5.8 0.3 3.9 3 2 1 4 4 4 0 MIT domain of nuclear receptor-binding factor 2 DUF4810 PF16068.5 gi|386001638|ref|YP_005919937.1| - 0.055 14.0 3.3 4.3 7.9 0.1 4.5 5 0 0 5 5 5 0 Domain of unknown function (DUF4810) HTH_Bact PF18768.1 gi|386001638|ref|YP_005919937.1| - 0.095 12.3 0.1 24 4.6 0.0 4.4 5 1 1 6 6 5 0 Helix-turn-helix bacterial domain DUF1447 PF07288.11 gi|386001638|ref|YP_005919937.1| - 0.11 12.6 0.1 0.34 11.0 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF1447) ANAPC5 PF12862.7 gi|386001638|ref|YP_005919937.1| - 0.83 9.8 3.1 10 6.2 0.2 3.7 3 1 1 4 4 4 0 Anaphase-promoting complex subunit 5 TPR_3 PF07720.12 gi|386001638|ref|YP_005919937.1| - 0.94 9.5 5.7 8.9 6.4 0.1 3.9 3 0 0 3 3 3 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|386001638|ref|YP_005919937.1| - 3.6 7.5 13.0 23 4.8 0.1 4.0 3 1 1 4 4 4 0 Virulence factor membrane-bound polymerase, C-terminal DUF1848 PF08902.11 gi|386001640|ref|YP_005919939.1| - 7.2e-85 284.9 0.0 8.1e-85 284.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1848) GAGA PF09237.11 gi|386001640|ref|YP_005919939.1| - 0.014 15.1 0.3 0.031 14.1 0.3 1.5 1 0 0 1 1 1 0 GAGA factor MqsA_antitoxin PF15731.5 gi|386001642|ref|YP_005919941.1| - 2.5e-06 27.6 0.1 2.9e-06 27.4 0.1 1.0 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA zf-FPG_IleRS PF06827.14 gi|386001642|ref|YP_005919941.1| - 0.0002 21.1 1.3 0.097 12.6 0.0 2.3 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS Rad50_zn_hook PF04423.14 gi|386001642|ref|YP_005919941.1| - 0.0006 19.6 0.4 0.0028 17.4 0.1 2.0 2 0 0 2 2 2 1 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.16 gi|386001642|ref|YP_005919941.1| - 0.00094 19.2 3.5 0.0034 17.4 3.5 2.0 1 1 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain zf-C4_Topoisom PF01396.19 gi|386001642|ref|YP_005919941.1| - 0.0054 16.5 1.7 0.018 14.8 0.3 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zf-ACC PF17848.1 gi|386001642|ref|YP_005919941.1| - 0.017 15.2 1.1 0.29 11.2 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 gi|386001642|ref|YP_005919941.1| - 0.023 14.1 0.2 2.4 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1272 PF06906.11 gi|386001642|ref|YP_005919941.1| - 0.025 14.7 0.5 0.4 10.8 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-TFIIB PF13453.6 gi|386001642|ref|YP_005919941.1| - 0.052 12.9 3.6 0.31 10.4 3.6 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger zf_Rg PF17915.1 gi|386001642|ref|YP_005919941.1| - 0.057 12.8 0.1 0.78 9.2 0.0 2.1 2 0 0 2 2 2 0 Reverse gyrase zinc finger Zn-ribbon_8 PF09723.10 gi|386001642|ref|YP_005919941.1| - 0.066 13.3 2.7 0.84 9.8 0.1 2.8 2 1 1 3 3 3 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|386001642|ref|YP_005919941.1| - 0.075 13.4 0.2 0.13 12.6 0.2 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar DnaJ_CXXCXGXG PF00684.19 gi|386001642|ref|YP_005919941.1| - 0.11 12.9 0.8 0.32 11.4 0.9 1.7 1 1 1 2 2 2 0 DnaJ central domain TF_Zn_Ribbon PF08271.12 gi|386001642|ref|YP_005919941.1| - 0.13 11.8 1.7 1.4 8.5 0.3 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_9 PF14369.6 gi|386001642|ref|YP_005919941.1| - 0.17 12.2 1.1 5.8 7.3 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon MafB19-deam PF14437.6 gi|386001642|ref|YP_005919941.1| - 0.22 11.3 0.5 0.65 9.7 0.0 1.7 1 1 1 2 2 2 0 MafB19-like deaminase ADK_lid PF05191.14 gi|386001642|ref|YP_005919941.1| - 0.25 11.4 2.9 1.7 8.7 0.1 2.3 2 1 0 2 2 2 0 Adenylate kinase, active site lid DUF4062 PF13271.6 gi|386001643|ref|YP_005919942.1| - 3.7e-05 24.0 0.0 7.3e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4062) PPI_Ypi1 PF07491.11 gi|386001643|ref|YP_005919942.1| - 0.16 11.8 0.2 0.43 10.4 0.2 1.7 1 0 0 1 1 1 0 Protein phosphatase inhibitor UPF0052 PF01933.18 gi|386001645|ref|YP_005919944.1| - 9.9e-27 93.9 0.0 1.3e-26 93.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 zf-ZPR1 PF03367.13 gi|386001646|ref|YP_005919945.1| - 6.3e-35 120.4 0.0 8e-35 120.0 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain zf-piccolo PF05715.13 gi|386001646|ref|YP_005919945.1| - 0.027 14.6 0.1 0.062 13.5 0.1 1.6 1 1 0 1 1 1 0 Piccolo Zn-finger SepF PF04472.12 gi|386001647|ref|YP_005919946.1| - 4.8e-11 42.8 0.1 6.9e-11 42.3 0.1 1.2 1 0 0 1 1 1 1 Cell division protein SepF SirB PF04247.12 gi|386001648|ref|YP_005919947.1| - 0.012 15.7 0.7 0.014 15.5 0.7 1.1 1 0 0 1 1 1 0 Invasion gene expression up-regulator, SirB Radical_SAM PF04055.21 gi|386001649|ref|YP_005919948.1| - 1.6e-12 48.1 0.0 4.1e-12 46.8 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily UPF0179 PF03684.13 gi|386001650|ref|YP_005919949.1| - 2.3e-53 179.9 0.7 2.6e-53 179.7 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Fe-ADH_2 PF13685.6 gi|386001651|ref|YP_005919950.1| - 2.2e-69 234.0 1.8 2.9e-69 233.6 1.8 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|386001651|ref|YP_005919950.1| - 2.7e-23 82.4 5.8 4.6e-22 78.3 5.8 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|386001651|ref|YP_005919950.1| - 1.2e-06 27.9 1.2 4.3e-06 26.1 1.2 1.8 1 1 0 1 1 1 1 3-dehydroquinate synthase ABC_tran PF00005.27 gi|386001652|ref|YP_005919951.1| - 1.3e-30 106.7 0.0 2.1e-30 106.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001652|ref|YP_005919951.1| - 1.1e-06 28.7 0.0 0.0069 16.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|386001652|ref|YP_005919951.1| - 6.5e-05 23.4 0.4 0.001 19.5 0.4 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|386001652|ref|YP_005919951.1| - 0.00084 19.6 0.1 0.0029 17.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|386001652|ref|YP_005919951.1| - 0.0013 19.0 0.3 0.016 15.5 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|386001652|ref|YP_005919951.1| - 0.0013 19.1 0.0 0.0023 18.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|386001652|ref|YP_005919951.1| - 0.0038 16.7 0.0 1.7 8.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|386001652|ref|YP_005919951.1| - 0.0056 16.6 0.0 0.0092 15.9 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|386001652|ref|YP_005919951.1| - 0.0064 17.0 0.0 0.01 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|386001652|ref|YP_005919951.1| - 0.0065 16.4 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase Mg_chelatase PF01078.21 gi|386001652|ref|YP_005919951.1| - 0.0078 15.6 0.0 0.26 10.6 0.0 2.4 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|386001652|ref|YP_005919951.1| - 0.012 15.6 0.4 0.034 14.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 gi|386001652|ref|YP_005919951.1| - 0.013 15.2 0.0 0.45 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|386001652|ref|YP_005919951.1| - 0.018 15.0 0.0 0.042 13.8 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|386001652|ref|YP_005919951.1| - 0.021 15.4 0.3 0.056 14.0 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|386001652|ref|YP_005919951.1| - 0.022 14.5 0.1 0.14 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|386001652|ref|YP_005919951.1| - 0.03 14.2 0.0 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|386001652|ref|YP_005919951.1| - 0.031 14.0 0.0 0.052 13.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|386001652|ref|YP_005919951.1| - 0.043 14.0 0.0 0.099 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|386001652|ref|YP_005919951.1| - 0.06 13.6 0.1 0.21 11.8 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|386001652|ref|YP_005919951.1| - 0.077 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|386001652|ref|YP_005919951.1| - 0.098 12.4 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation TsaE PF02367.17 gi|386001652|ref|YP_005919951.1| - 0.13 12.2 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|386001652|ref|YP_005919951.1| - 0.2 12.0 0.0 0.43 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Fer4 PF00037.27 gi|386001653|ref|YP_005919952.1| - 2.3e-13 49.3 10.5 4.1e-08 32.7 5.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386001653|ref|YP_005919952.1| - 2.6e-10 39.9 9.2 4.2e-08 32.9 4.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386001653|ref|YP_005919952.1| - 2.2e-07 30.9 5.6 4e-07 30.1 5.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001653|ref|YP_005919952.1| - 2.7e-07 30.6 4.8 1.3e-06 28.4 5.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386001653|ref|YP_005919952.1| - 6.1e-07 29.5 3.9 1.5e-06 28.3 3.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386001653|ref|YP_005919952.1| - 7.3e-07 29.7 5.9 3.1e-06 27.7 5.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386001653|ref|YP_005919952.1| - 8.2e-07 29.9 5.3 0.0024 18.7 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|386001653|ref|YP_005919952.1| - 2.5e-05 24.1 1.4 2.5e-05 24.1 1.4 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|386001653|ref|YP_005919952.1| - 0.00064 20.4 9.1 0.018 15.8 9.1 2.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|386001653|ref|YP_005919952.1| - 0.0045 17.8 5.8 0.0045 17.8 5.8 3.0 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|386001653|ref|YP_005919952.1| - 0.017 15.6 2.2 0.79 10.3 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386001653|ref|YP_005919952.1| - 0.085 13.4 1.3 0.085 13.4 1.3 3.1 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386001653|ref|YP_005919952.1| - 0.11 12.9 4.3 1.7 9.2 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|386001653|ref|YP_005919952.1| - 0.8 10.6 6.6 0.62 10.9 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|386001653|ref|YP_005919952.1| - 2.6 8.2 7.3 7.3 6.8 4.9 2.7 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Cupin_2 PF07883.11 gi|386001654|ref|YP_005919953.1| - 1.5e-15 56.7 0.1 2.1e-15 56.2 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|386001654|ref|YP_005919953.1| - 0.0014 18.6 0.0 0.0017 18.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|386001654|ref|YP_005919953.1| - 0.0015 18.5 0.0 0.0018 18.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Pirin_C PF05726.13 gi|386001654|ref|YP_005919953.1| - 0.01 16.2 0.0 0.013 15.9 0.0 1.2 1 0 0 1 1 1 1 Pirin C-terminal cupin domain Cupin_1 PF00190.22 gi|386001654|ref|YP_005919953.1| - 0.012 15.2 0.0 0.019 14.6 0.0 1.3 1 1 0 1 1 1 0 Cupin Auxin_BP PF02041.16 gi|386001654|ref|YP_005919953.1| - 0.075 12.7 0.0 0.16 11.6 0.0 1.6 1 1 0 1 1 1 0 Auxin binding protein Cupin_7 PF12973.7 gi|386001654|ref|YP_005919953.1| - 0.084 12.8 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Cupin_3 PF05899.12 gi|386001654|ref|YP_005919953.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|386001654|ref|YP_005919953.1| - 0.13 12.5 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Radical_SAM PF04055.21 gi|386001655|ref|YP_005919954.1| - 3.7e-22 79.5 0.2 5.7e-22 78.9 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|386001655|ref|YP_005919954.1| - 0.00015 21.9 1.0 0.0003 20.9 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|386001655|ref|YP_005919954.1| - 0.0016 18.7 0.0 0.004 17.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SRP19 PF01922.17 gi|386001656|ref|YP_005919955.1| - 1.4e-23 83.6 0.1 1.8e-23 83.3 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein DUF211 PF02680.14 gi|386001657|ref|YP_005919956.1| - 2.6e-38 130.0 2.9 3e-38 129.9 2.9 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 PHP PF02811.19 gi|386001658|ref|YP_005919957.1| - 2e-08 34.7 0.0 3e-08 34.2 0.0 1.3 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.16 gi|386001658|ref|YP_005919957.1| - 0.0013 18.3 0.0 0.0037 16.8 0.0 1.9 1 1 0 1 1 1 1 RNase P subunit p30 TetR_C_1 PF02909.17 gi|386001658|ref|YP_005919957.1| - 0.031 14.1 0.1 0.062 13.1 0.1 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF2209 PF09974.9 gi|386001659|ref|YP_005919958.1| - 1.8e-42 144.5 0.2 2e-42 144.3 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) MMR_HSR1 PF01926.23 gi|386001660|ref|YP_005919959.1| - 5.8e-20 71.5 0.0 9e-20 70.9 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.6 gi|386001660|ref|YP_005919959.1| - 4e-17 62.7 0.0 8.4e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal GTP-bdg_M PF16360.5 gi|386001660|ref|YP_005919959.1| - 1.1e-14 54.8 3.0 1.9e-14 54.0 3.0 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region MMR_HSR1_Xtn PF16897.5 gi|386001660|ref|YP_005919959.1| - 4.3e-07 29.9 0.0 7.4e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|386001660|ref|YP_005919959.1| - 3.1e-06 27.2 0.0 0.067 13.1 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|386001660|ref|YP_005919959.1| - 3.8e-06 26.5 0.0 1.2e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|386001660|ref|YP_005919959.1| - 0.00016 21.3 0.0 0.022 14.3 0.0 2.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|386001660|ref|YP_005919959.1| - 0.027 14.1 0.0 2 7.9 0.0 2.3 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|386001660|ref|YP_005919959.1| - 0.03 14.4 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 Dynamin family Arf PF00025.21 gi|386001660|ref|YP_005919959.1| - 0.11 11.9 0.0 0.31 10.5 0.0 1.8 1 1 0 1 1 1 0 ADP-ribosylation factor family AAA_25 PF13481.6 gi|386001660|ref|YP_005919959.1| - 0.42 10.2 1.8 3.3 7.3 0.1 2.5 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|386001660|ref|YP_005919959.1| - 0.96 10.0 2.6 1 9.9 0.0 2.4 2 1 0 2 2 1 0 AAA domain Peptidase_C25_C PF03785.14 gi|386001661|ref|YP_005919960.1| - 0.24 11.3 1.0 0.65 9.9 1.0 1.7 1 0 0 1 1 1 0 Peptidase family C25, C terminal ig-like domain ApbE PF02424.15 gi|386001661|ref|YP_005919960.1| - 0.53 9.8 0.0 0.53 9.8 0.0 2.2 2 1 0 2 2 2 0 ApbE family PIN PF01850.21 gi|386001662|ref|YP_005919961.1| - 2.7e-07 31.1 1.5 3.8e-07 30.7 1.5 1.2 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|386001662|ref|YP_005919961.1| - 0.0044 17.5 0.0 0.0095 16.4 0.0 1.5 1 1 0 1 1 1 1 PIN domain DUF104 PF01954.16 gi|386001663|ref|YP_005919962.1| - 2.5e-15 56.6 3.9 3.1e-15 56.3 3.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 TrkA_C PF02080.21 gi|386001663|ref|YP_005919962.1| - 0.091 12.6 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 TrkA-C domain RHH_8 PF17723.1 gi|386001664|ref|YP_005919963.1| - 2.6e-05 24.4 0.1 3e-05 24.2 0.1 1.4 1 1 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family RHH_1 PF01402.21 gi|386001664|ref|YP_005919963.1| - 7.4e-05 22.5 0.6 0.0044 16.9 0.0 2.3 2 0 0 2 2 2 2 Ribbon-helix-helix protein, copG family Succ_CoA_lig PF13607.6 gi|386001665|ref|YP_005919964.1| - 0.12 12.2 0.3 0.12 12.1 0.3 1.1 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain McrBC PF10117.9 gi|386001666|ref|YP_005919965.1| - 2.9e-33 115.3 0.0 3.5e-33 115.1 0.0 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component AAA_5 PF07728.14 gi|386001667|ref|YP_005919966.1| - 3.5e-21 75.7 0.0 6e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|386001667|ref|YP_005919966.1| - 2.7e-09 37.5 0.0 9.1e-09 35.8 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|386001667|ref|YP_005919966.1| - 4.6e-06 26.5 0.0 2.2e-05 24.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|386001667|ref|YP_005919966.1| - 3e-05 24.5 0.0 0.00091 19.6 0.0 2.9 2 1 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|386001667|ref|YP_005919966.1| - 5.9e-05 23.4 0.0 0.00031 21.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|386001667|ref|YP_005919966.1| - 0.0014 19.2 0.0 0.0056 17.2 0.0 2.0 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|386001667|ref|YP_005919966.1| - 0.0017 18.1 0.0 0.0086 15.8 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|386001667|ref|YP_005919966.1| - 0.0023 17.6 0.0 0.018 14.6 0.0 2.1 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|386001667|ref|YP_005919966.1| - 0.0046 16.7 0.1 0.77 9.5 0.0 3.0 4 0 0 4 4 4 1 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|386001667|ref|YP_005919966.1| - 0.006 16.9 0.0 0.025 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|386001667|ref|YP_005919966.1| - 0.0074 16.7 0.1 0.033 14.6 0.0 2.1 2 0 0 2 2 2 1 RNA helicase PhoH PF02562.16 gi|386001667|ref|YP_005919966.1| - 0.009 15.5 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_28 PF13521.6 gi|386001667|ref|YP_005919966.1| - 0.0093 16.2 0.1 0.064 13.5 0.0 2.4 3 0 0 3 3 2 1 AAA domain PPV_E1_C PF00519.17 gi|386001667|ref|YP_005919966.1| - 0.028 13.2 0.0 0.044 12.6 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase AAA_30 PF13604.6 gi|386001667|ref|YP_005919966.1| - 0.044 13.5 0.0 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|386001667|ref|YP_005919966.1| - 0.059 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|386001667|ref|YP_005919966.1| - 0.061 13.5 0.1 0.13 12.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|386001667|ref|YP_005919966.1| - 0.076 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|386001667|ref|YP_005919966.1| - 0.076 12.9 0.0 1.3 8.9 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|386001667|ref|YP_005919966.1| - 0.076 12.4 0.0 0.52 9.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_14 PF13173.6 gi|386001667|ref|YP_005919966.1| - 0.079 13.0 0.0 0.34 10.9 0.0 2.1 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|386001667|ref|YP_005919966.1| - 0.17 11.9 0.0 0.47 10.4 0.0 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|386001667|ref|YP_005919966.1| - 0.18 11.3 0.0 0.42 10.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region E1-E2_ATPase PF00122.20 gi|386001668|ref|YP_005919967.1| - 3.7e-50 170.0 2.2 3.7e-50 170.0 2.2 2.8 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|386001668|ref|YP_005919967.1| - 5.7e-46 156.5 9.5 5.7e-46 156.5 9.5 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|386001668|ref|YP_005919967.1| - 1.7e-23 84.0 6.9 3e-22 79.9 6.9 2.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|386001668|ref|YP_005919967.1| - 2.6e-18 65.4 0.0 5.3e-18 64.5 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|386001668|ref|YP_005919967.1| - 5.3e-18 64.9 0.0 1e-17 64.0 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|386001668|ref|YP_005919967.1| - 3.2e-08 33.6 0.8 0.00019 21.3 0.4 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|386001668|ref|YP_005919967.1| - 3.4e-06 27.6 0.1 7.6e-06 26.5 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Phage_holin_2_2 PF10746.9 gi|386001668|ref|YP_005919967.1| - 0.33 10.7 1.1 1.5 8.5 0.4 2.5 1 1 1 2 2 2 0 Phage holin T7 family, holin superfamily II Lactamase_B_2 PF12706.7 gi|386001669|ref|YP_005919968.1| - 0.00029 20.4 0.1 0.0021 17.6 0.1 2.2 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|386001669|ref|YP_005919968.1| - 0.00032 20.7 2.5 0.00076 19.5 2.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|386001669|ref|YP_005919968.1| - 0.08 12.9 0.1 0.19 11.7 0.1 1.6 1 0 0 1 1 1 0 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_3 PF13483.6 gi|386001669|ref|YP_005919968.1| - 0.17 11.8 0.0 0.38 10.6 0.0 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain TctA PF01970.16 gi|386001670|ref|YP_005919969.1| - 2.7e-67 227.3 37.0 3.2e-67 227.0 37.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family HlyIII PF03006.20 gi|386001670|ref|YP_005919969.1| - 0.21 11.3 8.9 0.054 13.2 1.5 2.7 3 0 0 3 3 3 0 Haemolysin-III related Ribosomal_L18 PF17135.4 gi|386001671|ref|YP_005919970.1| - 1.4e-16 60.5 0.0 1.5e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|386001671|ref|YP_005919970.1| - 3.1e-09 37.6 0.3 1.4e-08 35.5 0.3 1.9 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|386001672|ref|YP_005919971.1| - 1.4e-11 44.7 0.7 2.3e-09 37.6 0.7 2.1 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|386001673|ref|YP_005919972.1| - 1e-34 119.7 0.9 1.1e-34 119.5 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_Rpb6 PF01192.22 gi|386001674|ref|YP_005919973.1| - 0.017 15.1 0.1 0.019 14.9 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase Rpb6 Ribosomal_S2 PF00318.20 gi|386001675|ref|YP_005919974.1| - 8.2e-26 90.6 1.3 1.4e-15 57.1 0.6 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.6 gi|386001675|ref|YP_005919974.1| - 0.027 14.0 0.5 0.056 13.0 0.5 1.5 1 0 0 1 1 1 0 Periplasmic binding protein domain Memo PF01875.17 gi|386001676|ref|YP_005919975.1| - 4.3e-74 249.1 0.0 4.8e-74 248.9 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|386001676|ref|YP_005919975.1| - 0.0019 17.3 0.0 0.0028 16.8 0.0 1.3 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GHMP_kinases_N PF00288.26 gi|386001677|ref|YP_005919976.1| - 7.2e-17 61.4 1.3 2.3e-16 59.8 0.3 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|386001677|ref|YP_005919976.1| - 8.4e-12 45.3 0.6 2.2e-11 44.0 0.6 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal AA_kinase PF00696.28 gi|386001678|ref|YP_005919977.1| - 7.1e-33 114.2 0.7 8.1e-33 114.0 0.7 1.0 1 0 0 1 1 1 1 Amino acid kinase family RAMA PF18755.1 gi|386001678|ref|YP_005919977.1| - 0.076 13.4 0.0 0.21 12.0 0.0 1.7 2 0 0 2 2 2 0 Restriction Enzyme Adenine Methylase Associated FMN_dh PF01070.18 gi|386001679|ref|YP_005919978.1| - 8.8e-21 74.3 5.8 4.7e-12 45.6 4.2 2.2 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|386001679|ref|YP_005919978.1| - 0.0093 15.0 0.7 0.0093 15.0 0.7 2.3 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|386001679|ref|YP_005919978.1| - 0.8 8.8 4.7 1.2 8.1 2.4 2.3 2 1 0 2 2 2 0 Conserved region in glutamate synthase Lactamase_B_2 PF12706.7 gi|386001680|ref|YP_005919979.1| - 1.5e-09 37.7 0.3 6.8e-08 32.3 0.1 2.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|386001680|ref|YP_005919979.1| - 1.4e-08 34.5 0.3 3.4e-07 30.1 0.1 2.6 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|386001680|ref|YP_005919979.1| - 6.2e-06 26.4 0.8 1.5e-05 25.1 0.7 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PDEase_II PF02112.15 gi|386001680|ref|YP_005919979.1| - 0.075 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II polyprenyl_synt PF00348.17 gi|386001681|ref|YP_005919980.1| - 3.7e-70 235.9 0.0 4.3e-70 235.7 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase TetR_C_30 PF17939.1 gi|386001681|ref|YP_005919980.1| - 0.072 13.3 0.4 3.7 7.8 0.0 3.2 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain SprT-like PF10263.9 gi|386001682|ref|YP_005919981.1| - 0.0046 16.8 3.5 0.0051 16.6 3.5 1.3 1 0 0 1 1 1 1 SprT-like family DUF2407_C PF13373.6 gi|386001682|ref|YP_005919981.1| - 0.025 14.7 0.9 0.026 14.7 0.9 1.1 1 0 0 1 1 1 0 DUF2407 C-terminal domain Phage_fiber_2 PF03406.13 gi|386001682|ref|YP_005919981.1| - 0.33 10.5 1.3 0.52 9.9 1.3 1.4 1 0 0 1 1 1 0 Phage tail fibre repeat TrmB PF01978.19 gi|386001683|ref|YP_005919982.1| - 2e-25 88.4 0.1 3.5e-25 87.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|386001683|ref|YP_005919982.1| - 1e-05 24.8 0.0 1.7e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 gi|386001683|ref|YP_005919982.1| - 0.0024 17.6 0.0 0.0057 16.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|386001683|ref|YP_005919982.1| - 0.066 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 gi|386001683|ref|YP_005919982.1| - 0.09 12.7 0.0 0.29 11.1 0.0 1.9 1 1 1 2 2 2 0 MarR family Rrf2 PF02082.20 gi|386001683|ref|YP_005919982.1| - 0.095 13.1 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator NPCBM_assoc PF10633.9 gi|386001684|ref|YP_005919983.1| - 3.2e-05 24.1 0.1 0.39 11.0 0.0 3.6 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|386001684|ref|YP_005919983.1| - 0.00013 22.2 0.0 0.029 14.6 0.0 2.8 2 1 0 2 2 2 1 CARDB DUF11 PF01345.18 gi|386001684|ref|YP_005919983.1| - 0.00033 20.9 0.3 0.06 13.7 0.1 2.6 2 1 1 3 3 3 1 Domain of unknown function DUF11 TRAP_beta PF05753.14 gi|386001684|ref|YP_005919983.1| - 0.018 14.5 0.0 0.22 10.9 0.0 2.2 2 0 0 2 2 2 0 Translocon-associated protein beta (TRAPB) DUF756 PF05506.12 gi|386001684|ref|YP_005919983.1| - 0.026 15.4 0.5 8.1 7.4 0.3 3.8 3 1 0 3 3 3 0 Domain of unknown function (DUF756) DUF4131 PF13567.6 gi|386001684|ref|YP_005919983.1| - 0.13 11.9 1.6 52 3.4 0.1 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4131) ABC_tran PF00005.27 gi|386001685|ref|YP_005919984.1| - 3.6e-29 102.0 0.0 5.8e-29 101.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001685|ref|YP_005919984.1| - 9.6e-14 51.9 0.0 2.1e-06 27.8 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|386001685|ref|YP_005919984.1| - 0.0006 19.5 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|386001685|ref|YP_005919984.1| - 0.0011 18.8 0.0 0.056 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|386001685|ref|YP_005919984.1| - 0.0011 19.5 0.0 0.0019 18.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|386001685|ref|YP_005919984.1| - 0.0031 17.3 0.0 0.18 11.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|386001685|ref|YP_005919984.1| - 0.0033 17.8 0.2 0.0056 17.1 0.0 1.6 2 1 0 2 2 1 1 AAA ATPase domain AAA PF00004.29 gi|386001685|ref|YP_005919984.1| - 0.0078 16.6 0.0 0.019 15.4 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MutS_V PF00488.21 gi|386001685|ref|YP_005919984.1| - 0.01 15.9 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 MutS domain V TsaE PF02367.17 gi|386001685|ref|YP_005919984.1| - 0.033 14.2 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|386001685|ref|YP_005919984.1| - 0.037 14.0 0.0 0.059 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|386001685|ref|YP_005919984.1| - 0.041 13.8 0.0 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain SMC_N PF02463.19 gi|386001685|ref|YP_005919984.1| - 0.042 13.3 0.0 0.086 12.3 0.0 1.5 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MobB PF03205.14 gi|386001685|ref|YP_005919984.1| - 0.044 13.7 0.0 1.6 8.7 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|386001685|ref|YP_005919984.1| - 0.068 13.3 0.0 0.11 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|386001685|ref|YP_005919984.1| - 0.068 12.9 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|386001685|ref|YP_005919984.1| - 0.12 12.0 0.2 0.73 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|386001685|ref|YP_005919984.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ATPase_2 PF01637.18 gi|386001685|ref|YP_005919984.1| - 0.25 11.2 0.0 0.46 10.4 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ABC2_membrane_3 PF12698.7 gi|386001686|ref|YP_005919985.1| - 1.3e-31 110.0 11.3 1.3e-23 83.7 16.8 2.0 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|386001686|ref|YP_005919985.1| - 4.7e-30 104.6 11.7 4.7e-30 104.6 11.7 2.4 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|386001686|ref|YP_005919985.1| - 1.6e-11 44.1 1.1 3.5e-11 42.9 1.1 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|386001686|ref|YP_005919985.1| - 6.6e-05 22.5 2.7 0.00012 21.7 2.7 1.4 1 0 0 1 1 1 1 CcmB protein ABC2_membrane_4 PF12730.7 gi|386001686|ref|YP_005919985.1| - 0.00041 20.3 5.1 0.00041 20.3 5.1 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein LRV PF01816.17 gi|386001687|ref|YP_005919986.1| - 3.1e-42 140.2 36.6 1.2e-05 25.4 0.6 10.2 10 0 0 10 10 10 10 Leucine rich repeat variant DUF2336 PF10098.9 gi|386001687|ref|YP_005919986.1| - 1.1e-05 25.1 20.2 0.18 11.3 0.1 4.4 3 2 2 5 5 5 3 Uncharacterised protein conserved in bacteria (DUF2336) HEAT PF02985.22 gi|386001687|ref|YP_005919986.1| - 0.0054 16.9 24.4 0.82 10.1 0.2 8.6 9 0 0 9 9 9 1 HEAT repeat HEAT_2 PF13646.6 gi|386001687|ref|YP_005919986.1| - 0.01 16.2 25.5 4.6 7.7 4.3 7.0 1 1 4 5 5 5 0 HEAT repeats DUF1743 PF08489.11 gi|386001687|ref|YP_005919986.1| - 0.071 13.2 0.2 1 9.4 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1743) PHF12_MRG_bd PF16737.5 gi|386001687|ref|YP_005919986.1| - 9 6.1 5.5 1.5e+02 2.2 0.0 4.4 5 0 0 5 5 5 0 PHD finger protein 12 MRG binding domain acVLRF1 PF18859.1 gi|386001688|ref|YP_005919987.1| - 8.5e-19 68.1 0.4 8.5e-19 68.1 0.4 1.9 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|386001688|ref|YP_005919987.1| - 2.1e-07 31.2 0.5 2.1e-07 31.2 0.5 1.8 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 baeRF_family2 PF18844.1 gi|386001688|ref|YP_005919987.1| - 5.7e-06 26.5 0.3 5.7e-06 26.5 0.3 2.2 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 2 eRF1_2 PF03464.15 gi|386001688|ref|YP_005919987.1| - 5.1e-05 23.6 0.0 9.6e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 bZIP_1 PF00170.21 gi|386001688|ref|YP_005919987.1| - 0.0095 16.0 4.6 0.0095 16.0 4.6 1.9 2 0 0 2 2 2 1 bZIP transcription factor DUF4164 PF13747.6 gi|386001688|ref|YP_005919987.1| - 0.033 14.5 10.6 0.033 14.5 10.6 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4164) DUF724 PF05266.14 gi|386001688|ref|YP_005919987.1| - 0.23 11.3 3.6 0.4 10.5 3.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) PKcGMP_CC PF16808.5 gi|386001688|ref|YP_005919987.1| - 1.2 9.1 6.4 1.2 9.0 0.6 3.2 3 0 0 3 3 3 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DHODB_Fe-S_bind PF10418.9 gi|386001689|ref|YP_005919988.1| - 5.2e-11 42.2 2.6 9.7e-11 41.3 2.6 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.6 gi|386001689|ref|YP_005919988.1| - 0.029 14.4 0.8 0.055 13.5 0.8 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DUF11 PF01345.18 gi|386001690|ref|YP_005919989.1| - 0.0002 21.6 0.1 0.0006 20.1 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function DUF11 DUF11 PF01345.18 gi|386001691|ref|YP_005919990.1| - 9.5e-06 25.8 0.0 2e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF11 GATase_3 PF07685.14 gi|386001692|ref|YP_005919991.1| - 1.5e-51 174.8 0.0 2.1e-51 174.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|386001692|ref|YP_005919991.1| - 8.1e-21 74.7 0.0 6.2e-20 71.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|386001692|ref|YP_005919991.1| - 1.4e-19 70.4 0.0 2.5e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase PF00117.28 gi|386001692|ref|YP_005919991.1| - 0.00044 20.1 0.0 0.001 18.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DUF1611 PF07755.11 gi|386001692|ref|YP_005919991.1| - 0.00099 18.4 0.2 0.14 11.4 0.0 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF1611_C) P-loop domain MobB PF03205.14 gi|386001692|ref|YP_005919991.1| - 0.0015 18.5 0.0 0.0079 16.1 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|386001692|ref|YP_005919991.1| - 0.021 13.8 0.0 0.7 8.8 0.0 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SNO PF01174.19 gi|386001692|ref|YP_005919991.1| - 0.17 11.7 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DUF3280 PF11684.8 gi|386001692|ref|YP_005919991.1| - 0.18 12.2 0.0 0.32 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2380) CTP_synth_N PF06418.14 gi|386001692|ref|YP_005919991.1| - 0.19 11.0 0.0 0.37 10.1 0.0 1.4 1 0 0 1 1 1 0 CTP synthase N-terminus CBS PF00571.28 gi|386001693|ref|YP_005919992.1| - 3.2e-39 133.2 12.1 9.7e-15 54.8 1.7 4.2 4 0 0 4 4 4 4 CBS domain GAF PF01590.26 gi|386001693|ref|YP_005919992.1| - 0.0062 17.2 0.5 3.5 8.3 0.1 2.4 1 1 1 2 2 2 2 GAF domain Usp PF00582.26 gi|386001694|ref|YP_005919993.1| - 5.6e-33 114.4 0.5 6.2e-33 114.3 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.20 gi|386001695|ref|YP_005919994.1| - 3e-34 118.9 0.2 2.4e-32 112.6 0.2 2.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|386001695|ref|YP_005919994.1| - 1.7e-07 31.1 0.2 1.7e-07 31.1 0.2 2.0 2 1 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|386001695|ref|YP_005919994.1| - 1.2e-06 28.1 0.0 1.7e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase RibD_C PF01872.17 gi|386001696|ref|YP_005919995.1| - 5.5e-52 176.5 0.0 6.1e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF169 PF02596.15 gi|386001697|ref|YP_005919996.1| - 3.7e-56 190.3 0.0 4.3e-56 190.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 RelB_N PF18506.1 gi|386001698|ref|YP_005919997.1| - 0.046 13.5 0.5 0.046 13.5 0.5 2.4 2 1 1 3 3 3 0 RelB Antitoxin alpha helical domain DUF188 PF02639.14 gi|386001698|ref|YP_005919997.1| - 0.083 12.6 0.0 0.097 12.3 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 Bac_small_YrzI PF09501.10 gi|386001698|ref|YP_005919997.1| - 0.21 11.7 3.4 3.8 7.7 0.5 2.1 1 1 1 2 2 2 0 Probable sporulation protein (Bac_small_yrzI) Macro PF01661.21 gi|386001699|ref|YP_005919998.1| - 1.4e-44 150.9 0.0 1.7e-44 150.6 0.0 1.1 1 0 0 1 1 1 1 Macro domain Dala_Dala_lig_C PF07478.13 gi|386001700|ref|YP_005919999.1| - 2.5e-25 89.2 0.0 3.9e-25 88.6 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Acetyltransf_3 PF13302.7 gi|386001700|ref|YP_005919999.1| - 1.5e-18 67.8 0.0 5.2e-18 66.0 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|386001700|ref|YP_005919999.1| - 2.6e-11 43.8 0.0 1.2e-10 41.7 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family ATP-grasp_3 PF02655.14 gi|386001700|ref|YP_005919999.1| - 2e-10 41.0 0.0 5.2e-10 39.6 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Acetyltransf_8 PF13523.6 gi|386001700|ref|YP_005919999.1| - 6.2e-10 38.9 0.0 2.9e-09 36.8 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain ATP-grasp_4 PF13535.6 gi|386001700|ref|YP_005919999.1| - 9.8e-07 28.5 0.0 3.6e-05 23.4 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp domain Acetyltransf_4 PF13420.7 gi|386001700|ref|YP_005919999.1| - 1.3e-05 25.3 0.0 2.1e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CPSase_L_D2 PF02786.17 gi|386001700|ref|YP_005919999.1| - 6.4e-05 22.5 0.0 0.0021 17.6 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain FR47 PF08445.10 gi|386001700|ref|YP_005919999.1| - 0.00025 20.9 0.0 0.00056 19.8 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|386001700|ref|YP_005919999.1| - 0.0018 18.7 0.0 0.0039 17.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|386001700|ref|YP_005919999.1| - 0.0021 18.0 0.0 0.0037 17.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain RimK PF08443.11 gi|386001700|ref|YP_005919999.1| - 0.0028 17.3 0.0 0.12 12.0 0.0 2.2 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|386001700|ref|YP_005919999.1| - 0.16 11.7 0.0 0.35 10.6 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.6 gi|386001700|ref|YP_005919999.1| - 0.2 10.9 0.0 1.3 8.2 0.0 2.0 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.13 gi|386001701|ref|YP_005920000.1| - 3.4e-30 105.1 0.0 4.5e-30 104.7 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|386001701|ref|YP_005920000.1| - 0.0011 19.1 0.0 0.0084 16.2 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|386001701|ref|YP_005920000.1| - 0.0059 16.2 0.0 0.015 14.9 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.19 gi|386001701|ref|YP_005920000.1| - 0.007 16.2 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_N PF01820.21 gi|386001701|ref|YP_005920000.1| - 0.077 13.5 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 D-ala D-ala ligase N-terminus ATP-grasp PF02222.22 gi|386001701|ref|YP_005920000.1| - 0.1 12.1 0.0 0.27 10.8 0.0 1.7 2 0 0 2 2 2 0 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|386001701|ref|YP_005920000.1| - 0.13 12.0 0.0 4.2 7.1 0.0 2.5 3 0 0 3 3 3 0 ATP-grasp in the biosynthetic pathway with Ter operon Radical_SAM PF04055.21 gi|386001702|ref|YP_005920001.1| - 8.7e-15 55.5 0.0 2.2e-14 54.2 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily LAM_C PF12544.8 gi|386001702|ref|YP_005920001.1| - 1.6e-14 54.1 0.1 2.6e-14 53.5 0.1 1.3 1 0 0 1 1 1 1 Lysine-2,3-aminomutase Fer4_12 PF13353.6 gi|386001702|ref|YP_005920001.1| - 0.0003 21.1 0.0 0.00057 20.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|386001702|ref|YP_005920001.1| - 0.00047 20.3 0.0 0.0012 18.9 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ion_trans PF00520.31 gi|386001703|ref|YP_005920002.1| - 2.8e-18 66.0 14.8 3.6e-18 65.7 14.8 1.0 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|386001703|ref|YP_005920002.1| - 6.9e-18 64.4 4.1 6.9e-18 64.4 4.1 2.9 3 0 0 3 3 3 1 Ion channel OrfB_Zn_ribbon PF07282.11 gi|386001703|ref|YP_005920002.1| - 0.034 14.1 0.5 0.062 13.2 0.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ribosomal_L37e PF01907.19 gi|386001703|ref|YP_005920002.1| - 0.057 13.6 3.7 0.085 13.0 1.6 2.0 1 1 1 2 2 2 0 Ribosomal protein L37e zf-RING_2 PF13639.6 gi|386001703|ref|YP_005920002.1| - 0.077 13.4 1.6 0.13 12.6 1.6 1.4 1 0 0 1 1 1 0 Ring finger domain zinc_ribbon_2 PF13240.6 gi|386001703|ref|YP_005920002.1| - 0.096 12.4 1.0 1.2 8.9 1.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|386001703|ref|YP_005920002.1| - 0.13 12.3 0.8 0.24 11.5 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon TrkH PF02386.16 gi|386001704|ref|YP_005920003.1| - 4.3e-50 170.6 24.4 4.5e-30 104.6 7.3 3.1 2 1 0 2 2 2 2 Cation transport protein AA_permease_2 PF13520.6 gi|386001705|ref|YP_005920004.1| - 1.6e-41 142.6 39.9 1.9e-41 142.3 39.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|386001705|ref|YP_005920004.1| - 3.1e-37 128.3 39.1 4.1e-37 127.9 39.1 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|386001705|ref|YP_005920004.1| - 2.5e-09 36.4 16.7 2.5e-09 36.4 16.7 2.2 1 1 1 2 2 2 2 Spore germination protein AA_permease_C PF13906.6 gi|386001705|ref|YP_005920004.1| - 0.0024 17.9 0.7 0.0024 17.9 0.7 5.2 5 0 0 5 5 5 1 C-terminus of AA_permease Lactamase_B_2 PF12706.7 gi|386001707|ref|YP_005920006.1| - 1.7e-27 96.2 0.1 2.2e-27 95.9 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|386001707|ref|YP_005920006.1| - 4.3e-21 75.8 0.2 5.9e-21 75.4 0.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|386001707|ref|YP_005920006.1| - 0.00078 19.4 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.29 gi|386001708|ref|YP_005920007.1| - 1.8e-35 122.2 0.0 3.7e-35 121.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|386001708|ref|YP_005920007.1| - 2e-12 46.7 0.0 4.6e-12 45.5 0.0 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|386001708|ref|YP_005920007.1| - 0.00011 22.2 0.1 0.00052 20.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|386001708|ref|YP_005920007.1| - 0.00015 22.3 0.0 0.00086 19.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|386001708|ref|YP_005920007.1| - 0.0037 17.4 0.1 0.023 14.9 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|386001708|ref|YP_005920007.1| - 0.0046 17.4 0.2 0.46 10.9 0.0 2.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 gi|386001708|ref|YP_005920007.1| - 0.005 17.1 0.4 0.028 14.7 0.0 2.4 3 0 0 3 3 3 1 AAA domain RuvB_N PF05496.12 gi|386001708|ref|YP_005920007.1| - 0.027 14.2 0.0 0.062 13.0 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|386001708|ref|YP_005920007.1| - 0.035 14.4 0.7 2.6 8.3 0.2 2.7 1 1 1 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|386001708|ref|YP_005920007.1| - 0.035 13.8 0.2 0.28 10.9 0.1 2.1 1 1 0 2 2 2 0 IstB-like ATP binding protein TIP49 PF06068.13 gi|386001708|ref|YP_005920007.1| - 0.037 13.2 0.0 0.076 12.2 0.0 1.6 1 0 0 1 1 1 0 TIP49 P-loop domain DUF815 PF05673.13 gi|386001708|ref|YP_005920007.1| - 0.039 13.1 0.0 0.057 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_11 PF13086.6 gi|386001708|ref|YP_005920007.1| - 0.074 12.8 0.3 0.21 11.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|386001708|ref|YP_005920007.1| - 0.081 12.4 0.2 0.17 11.3 0.2 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|386001708|ref|YP_005920007.1| - 0.098 12.0 0.0 0.23 10.8 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DegS PF05384.11 gi|386001708|ref|YP_005920007.1| - 0.098 12.1 2.3 0.14 11.6 0.6 2.1 1 1 1 2 2 2 0 Sensor protein DegS Rad17 PF03215.15 gi|386001708|ref|YP_005920007.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain CSN5_C PF18323.1 gi|386001708|ref|YP_005920007.1| - 0.16 12.9 0.1 0.4 11.6 0.1 1.7 1 0 0 1 1 1 0 Cop9 signalosome subunit 5 C-terminal domain AAA_2 PF07724.14 gi|386001708|ref|YP_005920007.1| - 0.23 11.5 1.5 0.88 9.7 0.0 2.6 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_17 PF13207.6 gi|386001708|ref|YP_005920007.1| - 0.29 11.6 2.9 0.44 11.0 0.2 2.7 2 1 0 2 2 2 0 AAA domain HMGL-like PF00682.19 gi|386001709|ref|YP_005920008.1| - 2.2e-73 247.1 0.5 4.2e-73 246.2 0.5 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|386001709|ref|YP_005920008.1| - 2.6e-33 114.8 1.5 5.4e-33 113.7 1.5 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF4974 PF16344.5 gi|386001709|ref|YP_005920008.1| - 0.081 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4974) TPP_enzyme_N PF02776.18 gi|386001710|ref|YP_005920009.1| - 2e-59 200.1 0.1 4.9e-59 198.8 0.1 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|386001710|ref|YP_005920009.1| - 9.3e-56 187.4 0.1 1.5e-55 186.6 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|386001710|ref|YP_005920009.1| - 3.4e-52 176.3 0.1 5.3e-51 172.4 0.1 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_47 PF16221.5 gi|386001710|ref|YP_005920009.1| - 0.033 13.7 0.0 0.09 12.4 0.0 1.7 1 0 0 1 1 1 0 winged helix-turn-helix POR_N PF01855.19 gi|386001710|ref|YP_005920009.1| - 0.039 13.7 0.3 0.077 12.7 0.3 1.4 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALS_ss_C PF10369.9 gi|386001711|ref|YP_005920010.1| - 4.4e-30 103.7 3.1 4.4e-30 103.7 3.1 2.0 2 1 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|386001711|ref|YP_005920010.1| - 6.7e-20 70.7 1.0 1.8e-19 69.3 0.1 2.1 2 1 0 2 2 2 1 ACT domain ACT PF01842.25 gi|386001711|ref|YP_005920010.1| - 2.5e-16 59.1 0.5 7.6e-16 57.6 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|386001711|ref|YP_005920010.1| - 6.1e-06 26.7 1.6 1.4e-05 25.6 0.2 2.0 2 0 0 2 2 2 1 ACT domain NIL PF09383.10 gi|386001711|ref|YP_005920010.1| - 0.001 18.9 0.2 0.58 10.1 0.0 2.5 2 1 0 2 2 2 2 NIL domain ACT_6 PF13740.6 gi|386001711|ref|YP_005920010.1| - 0.022 14.7 0.3 10 6.2 0.0 2.8 3 0 0 3 3 3 0 ACT domain SLS PF14611.6 gi|386001711|ref|YP_005920010.1| - 0.032 14.1 1.1 0.094 12.5 1.0 1.6 1 1 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator DUF2096 PF09869.9 gi|386001711|ref|YP_005920010.1| - 0.078 13.1 1.9 0.18 11.9 1.7 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2096) Saccharop_dh_N PF04455.12 gi|386001711|ref|YP_005920010.1| - 0.11 12.9 0.2 0.56 10.6 0.1 2.0 1 1 1 2 2 2 0 LOR/SDH bifunctional enzyme conserved region IlvN PF07991.12 gi|386001712|ref|YP_005920011.1| - 7e-75 250.1 0.1 9e-75 249.8 0.1 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|386001712|ref|YP_005920011.1| - 1.7e-61 206.7 0.4 2.3e-61 206.3 0.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|386001712|ref|YP_005920011.1| - 6.4e-08 32.2 0.0 1.1e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|386001712|ref|YP_005920011.1| - 1.7e-06 28.5 0.0 3e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|386001712|ref|YP_005920011.1| - 5.1e-06 26.7 0.0 8.7e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|386001712|ref|YP_005920011.1| - 2e-05 24.7 0.0 3.5e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Oxidored_nitro PF00148.19 gi|386001712|ref|YP_005920011.1| - 0.008 15.0 0.0 0.0093 14.7 0.0 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase GFO_IDH_MocA PF01408.22 gi|386001712|ref|YP_005920011.1| - 0.022 15.6 0.0 0.037 14.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Mur_ligase PF01225.25 gi|386001712|ref|YP_005920011.1| - 0.047 14.0 0.2 0.27 11.6 0.2 2.2 1 1 0 1 1 1 0 Mur ligase family, catalytic domain 3HCDH_N PF02737.18 gi|386001712|ref|YP_005920011.1| - 0.07 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Nitro_FeMo-Co PF02579.17 gi|386001712|ref|YP_005920011.1| - 0.12 12.7 0.1 0.29 11.5 0.1 1.6 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor DUF2283 PF10049.9 gi|386001713|ref|YP_005920012.1| - 1.5e-12 47.5 0.4 2.5e-12 46.8 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) S-layer PF07752.11 gi|386001714|ref|YP_005920013.1| - 1.7e-90 302.6 1.9 1e-44 152.5 0.5 2.0 1 1 1 2 2 2 2 S-layer protein PrcB_C PF14343.6 gi|386001714|ref|YP_005920013.1| - 0.0086 16.2 0.1 4.2 7.6 0.1 2.6 2 0 0 2 2 2 2 PrcB C-terminal CIF PF16374.5 gi|386001714|ref|YP_005920013.1| - 0.13 12.4 0.0 1.1 9.4 0.0 2.0 2 0 0 2 2 2 0 Cycle inhibiting factor (CIF) DUF4981 PF16353.5 gi|386001714|ref|YP_005920013.1| - 0.15 12.5 0.0 1.7 9.2 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function(DUF4981) Polbeta PF18765.1 gi|386001715|ref|YP_005920014.1| - 9.8e-16 57.6 0.1 1.1e-15 57.5 0.1 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|386001715|ref|YP_005920014.1| - 3.5e-14 52.9 0.3 4e-14 52.7 0.3 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain LpxI_N PF17930.1 gi|386001715|ref|YP_005920014.1| - 0.12 12.3 0.1 0.13 12.1 0.1 1.3 1 1 0 1 1 1 0 LpxI N-terminal domain DUF86 PF01934.17 gi|386001716|ref|YP_005920015.1| - 7.8e-27 93.5 0.2 8.9e-27 93.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF1706 PF08020.11 gi|386001716|ref|YP_005920015.1| - 0.015 15.2 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1706) A_deamin PF02137.18 gi|386001716|ref|YP_005920015.1| - 0.067 12.6 0.0 0.067 12.6 0.0 1.0 1 0 0 1 1 1 0 Adenosine-deaminase (editase) domain DUF2283 PF10049.9 gi|386001717|ref|YP_005920016.1| - 2.7e-13 49.9 0.4 3.6e-13 49.5 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) PBECR2 PF18810.1 gi|386001718|ref|YP_005920017.1| - 0.00018 21.8 0.1 0.00021 21.6 0.1 1.1 1 0 0 1 1 1 1 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 DUF4258 PF14076.6 gi|386001718|ref|YP_005920017.1| - 0.0061 16.9 0.2 0.014 15.8 0.1 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4258) PBECR1 PF18809.1 gi|386001718|ref|YP_005920017.1| - 0.049 14.3 0.0 0.067 13.9 0.0 1.2 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1 DUF86 PF01934.17 gi|386001719|ref|YP_005920018.1| - 6.3e-25 87.3 0.1 7.6e-25 87.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.23 gi|386001720|ref|YP_005920019.1| - 1.1e-15 57.7 0.0 1.2e-15 57.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|386001720|ref|YP_005920019.1| - 1.1e-11 44.6 0.0 1.3e-11 44.5 0.0 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HicB_lk_antitox PF15919.5 gi|386001721|ref|YP_005920020.1| - 1.4e-05 25.2 0.0 1.6e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system Methyltransf_25 PF13649.6 gi|386001723|ref|YP_005920022.1| - 2.7e-16 60.0 0.0 4.6e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386001723|ref|YP_005920022.1| - 1.4e-13 51.3 0.0 2.1e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386001723|ref|YP_005920022.1| - 6.1e-10 39.7 0.0 1.1e-09 38.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386001723|ref|YP_005920022.1| - 1.4e-08 34.7 0.0 1.9e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386001723|ref|YP_005920022.1| - 1e-06 28.6 0.0 1.4e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386001723|ref|YP_005920022.1| - 1.9e-05 24.1 0.0 2.7e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|386001723|ref|YP_005920022.1| - 0.00029 20.4 0.0 0.00053 19.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|386001723|ref|YP_005920022.1| - 0.00036 20.2 0.0 0.00052 19.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 gi|386001723|ref|YP_005920022.1| - 0.00063 19.2 0.0 0.00091 18.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CheR PF01739.18 gi|386001723|ref|YP_005920022.1| - 0.017 14.6 0.0 3.8 6.9 0.0 2.3 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_15 PF09445.10 gi|386001723|ref|YP_005920022.1| - 0.19 11.3 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase CbiA PF01656.23 gi|386001724|ref|YP_005920023.1| - 1.1e-14 54.6 0.0 1.7e-14 54.0 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|386001724|ref|YP_005920023.1| - 1e-07 31.7 0.3 2.6e-07 30.3 0.5 1.5 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|386001724|ref|YP_005920023.1| - 8.5e-07 29.0 0.2 1.7e-06 28.0 0.1 1.6 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|386001724|ref|YP_005920023.1| - 1.2e-05 25.3 0.1 2.2e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase MipZ PF09140.11 gi|386001724|ref|YP_005920023.1| - 1.3e-05 24.6 0.0 7.8e-05 22.1 0.0 1.9 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|386001724|ref|YP_005920023.1| - 2.7e-05 23.5 0.5 6e-05 22.4 0.5 1.6 1 0 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|386001724|ref|YP_005920023.1| - 3.8e-05 23.3 0.0 0.0055 16.2 0.1 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|386001724|ref|YP_005920023.1| - 4.9e-05 22.9 0.1 9.1e-05 22.0 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF87 PF01935.17 gi|386001724|ref|YP_005920023.1| - 6.8e-05 23.1 0.2 0.00012 22.3 0.1 1.5 2 0 0 2 2 1 1 Helicase HerA, central domain SRP54 PF00448.22 gi|386001724|ref|YP_005920023.1| - 0.00022 20.9 0.2 0.0011 18.6 0.1 2.0 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|386001724|ref|YP_005920023.1| - 0.00022 20.5 0.1 0.00037 19.8 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin KTI12 PF08433.10 gi|386001724|ref|YP_005920023.1| - 0.00023 20.7 0.0 0.00045 19.8 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 CLP1_P PF16575.5 gi|386001724|ref|YP_005920023.1| - 0.0003 20.7 0.0 0.0022 17.8 0.0 2.0 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|386001724|ref|YP_005920023.1| - 0.00064 19.4 0.0 0.0021 17.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|386001724|ref|YP_005920023.1| - 0.0015 19.0 0.0 0.0033 18.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|386001724|ref|YP_005920023.1| - 0.0024 18.3 0.0 0.0069 16.8 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|386001724|ref|YP_005920023.1| - 0.0029 17.8 0.0 0.0045 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.7 gi|386001724|ref|YP_005920023.1| - 0.0044 16.0 0.4 0.13 11.2 0.0 2.5 3 0 0 3 3 3 1 AAA-like domain AAA_24 PF13479.6 gi|386001724|ref|YP_005920023.1| - 0.0059 16.4 0.0 0.023 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|386001724|ref|YP_005920023.1| - 0.0071 16.5 0.1 1.9 8.6 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain TrkA_N PF02254.18 gi|386001724|ref|YP_005920023.1| - 0.0075 16.5 0.0 0.51 10.6 0.0 2.4 2 1 0 2 2 2 1 TrkA-N domain MMR_HSR1 PF01926.23 gi|386001724|ref|YP_005920023.1| - 0.02 15.0 0.1 5.8 7.0 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase ATPase PF06745.13 gi|386001724|ref|YP_005920023.1| - 0.022 14.1 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 KaiC ATP_bind_1 PF03029.17 gi|386001724|ref|YP_005920023.1| - 0.026 14.3 0.2 0.08 12.7 0.1 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_26 PF13500.6 gi|386001724|ref|YP_005920023.1| - 0.03 14.1 0.8 6.4 6.5 0.3 2.2 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|386001724|ref|YP_005920023.1| - 0.036 13.0 0.0 0.27 10.1 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain CoaE PF01121.20 gi|386001724|ref|YP_005920023.1| - 0.041 13.6 0.0 0.37 10.4 0.0 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase Thymidylate_kin PF02223.17 gi|386001724|ref|YP_005920023.1| - 0.046 13.4 0.1 0.3 10.7 0.0 2.2 3 0 0 3 3 3 0 Thymidylate kinase RNA_helicase PF00910.22 gi|386001724|ref|YP_005920023.1| - 0.062 13.7 0.0 0.15 12.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.6 gi|386001724|ref|YP_005920023.1| - 0.082 13.2 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|386001724|ref|YP_005920023.1| - 0.095 12.5 0.7 0.4 10.5 0.2 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|386001724|ref|YP_005920023.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|386001724|ref|YP_005920023.1| - 0.11 13.0 0.1 0.18 12.3 0.1 1.5 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|386001724|ref|YP_005920023.1| - 0.12 12.1 0.3 0.22 11.2 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|386001724|ref|YP_005920023.1| - 0.13 12.7 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|386001724|ref|YP_005920023.1| - 0.13 11.2 0.1 0.23 10.4 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB LpxK PF02606.14 gi|386001724|ref|YP_005920023.1| - 0.2 10.7 0.1 0.85 8.6 0.1 1.9 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase G-alpha PF00503.20 gi|386001724|ref|YP_005920023.1| - 0.29 10.2 0.3 0.7 9.0 0.0 1.7 2 0 0 2 2 2 0 G-protein alpha subunit ABC_tran PF00005.27 gi|386001725|ref|YP_005920024.1| - 7.4e-30 104.2 0.0 9.8e-30 103.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001725|ref|YP_005920024.1| - 2.8e-12 47.1 0.6 1.2e-05 25.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|386001725|ref|YP_005920024.1| - 8.9e-07 28.6 0.0 0.00014 21.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|386001725|ref|YP_005920024.1| - 1.1e-05 25.4 0.0 0.00085 19.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|386001725|ref|YP_005920024.1| - 0.00042 20.8 0.1 0.0007 20.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|386001725|ref|YP_005920024.1| - 0.00056 19.6 0.2 0.0012 18.6 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|386001725|ref|YP_005920024.1| - 0.0037 17.2 0.1 0.017 15.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|386001725|ref|YP_005920024.1| - 0.0074 16.3 0.0 0.19 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|386001725|ref|YP_005920024.1| - 0.0076 16.7 0.1 0.033 14.6 0.1 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|386001725|ref|YP_005920024.1| - 0.0083 16.1 0.1 0.014 15.3 0.1 1.3 1 0 0 1 1 1 1 NACHT domain AAA_23 PF13476.6 gi|386001725|ref|YP_005920024.1| - 0.009 16.5 0.2 0.016 15.7 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|386001725|ref|YP_005920024.1| - 0.0095 15.7 0.1 0.019 14.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|386001725|ref|YP_005920024.1| - 0.012 15.9 0.1 0.085 13.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|386001725|ref|YP_005920024.1| - 0.013 14.9 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.9 gi|386001725|ref|YP_005920024.1| - 0.02 14.6 0.5 0.11 12.2 0.3 2.0 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.15 gi|386001725|ref|YP_005920024.1| - 0.022 14.7 0.2 0.092 12.7 0.1 1.9 2 0 0 2 2 2 0 NTPase AAA_7 PF12775.7 gi|386001725|ref|YP_005920024.1| - 0.024 14.2 0.0 0.037 13.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region G-alpha PF00503.20 gi|386001725|ref|YP_005920024.1| - 0.025 13.8 0.0 0.034 13.3 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit NB-ARC PF00931.22 gi|386001725|ref|YP_005920024.1| - 0.033 13.4 0.0 0.09 11.9 0.0 1.7 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|386001725|ref|YP_005920024.1| - 0.037 14.6 0.0 0.2 12.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|386001725|ref|YP_005920024.1| - 0.038 13.7 0.1 0.069 12.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|386001725|ref|YP_005920024.1| - 0.057 13.7 0.0 0.89 9.8 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATP-synt_ab PF00006.25 gi|386001725|ref|YP_005920024.1| - 0.064 12.9 0.1 0.073 12.7 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.6 gi|386001725|ref|YP_005920024.1| - 0.073 13.2 0.0 0.15 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|386001725|ref|YP_005920024.1| - 0.076 13.3 0.1 0.15 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|386001725|ref|YP_005920024.1| - 0.086 12.7 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|386001725|ref|YP_005920024.1| - 0.12 12.3 0.4 0.25 11.3 0.2 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|386001725|ref|YP_005920024.1| - 0.14 12.5 0.0 0.25 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|386001725|ref|YP_005920024.1| - 0.15 12.4 0.1 0.7 10.2 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|386001725|ref|YP_005920024.1| - 0.16 11.6 0.1 0.64 9.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|386001725|ref|YP_005920024.1| - 0.25 11.3 0.6 1 9.2 0.1 1.9 2 0 0 2 2 2 0 RsgA GTPase FecCD PF01032.18 gi|386001726|ref|YP_005920025.1| - 6.3e-87 291.5 29.3 7.5e-87 291.2 29.3 1.0 1 0 0 1 1 1 1 FecCD transport family GHMP_kinases_N PF00288.26 gi|386001726|ref|YP_005920025.1| - 0.009 16.2 5.0 1.1 9.6 0.1 2.8 2 0 0 2 2 2 2 GHMP kinases N terminal domain Peripla_BP_2 PF01497.18 gi|386001727|ref|YP_005920026.1| - 1.7e-21 76.9 0.1 2.2e-21 76.5 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.18 gi|386001728|ref|YP_005920027.1| - 8.6e-25 87.7 0.0 1.4e-24 87.0 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|386001728|ref|YP_005920027.1| - 0.032 14.4 2.2 0.087 13.0 2.2 1.7 1 0 0 1 1 1 0 Dockerin type I domain EF-hand_7 PF13499.6 gi|386001728|ref|YP_005920027.1| - 0.15 12.5 0.3 0.64 10.5 0.1 2.0 1 1 1 2 2 2 0 EF-hand domain pair Peripla_BP_2 PF01497.18 gi|386001729|ref|YP_005920028.1| - 7e-21 74.9 0.0 1.3e-20 74.0 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein Dockerin_1 PF00404.18 gi|386001729|ref|YP_005920028.1| - 0.076 13.2 3.1 0.18 12.0 3.1 1.6 1 0 0 1 1 1 0 Dockerin type I domain EF-hand_5 PF13202.6 gi|386001729|ref|YP_005920028.1| - 0.11 12.0 0.5 0.57 9.8 0.5 2.3 1 0 0 1 1 1 0 EF hand ABC_tran PF00005.27 gi|386001730|ref|YP_005920029.1| - 9.2e-35 120.1 0.0 1.2e-34 119.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001730|ref|YP_005920029.1| - 5.2e-10 39.6 3.0 4.2e-06 26.8 0.5 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|386001730|ref|YP_005920029.1| - 4.2e-06 27.1 0.2 1.4e-05 25.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|386001730|ref|YP_005920029.1| - 2e-05 25.1 0.8 3.3e-05 24.4 0.8 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|386001730|ref|YP_005920029.1| - 4.6e-05 23.0 0.0 9.3e-05 22.0 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|386001730|ref|YP_005920029.1| - 0.00036 21.0 0.1 0.0038 17.7 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|386001730|ref|YP_005920029.1| - 0.0077 16.2 0.9 0.17 11.9 0.1 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) TniB PF05621.11 gi|386001730|ref|YP_005920029.1| - 0.0097 15.3 0.3 1.3 8.4 0.1 2.6 2 1 1 3 3 3 1 Bacterial TniB protein AAA_33 PF13671.6 gi|386001730|ref|YP_005920029.1| - 0.011 15.9 0.0 0.021 15.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|386001730|ref|YP_005920029.1| - 0.015 15.0 1.3 0.51 10.0 0.3 2.1 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|386001730|ref|YP_005920029.1| - 0.021 13.5 0.0 2.7 6.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|386001730|ref|YP_005920029.1| - 0.026 15.1 0.0 0.071 13.7 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|386001730|ref|YP_005920029.1| - 0.028 14.2 0.1 0.052 13.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|386001730|ref|YP_005920029.1| - 0.065 13.5 0.0 1.2 9.5 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.17 gi|386001730|ref|YP_005920029.1| - 0.073 12.8 0.1 0.84 9.3 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|386001730|ref|YP_005920029.1| - 0.087 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|386001730|ref|YP_005920029.1| - 0.095 12.3 1.5 0.36 10.4 1.5 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|386001730|ref|YP_005920029.1| - 0.1 12.5 1.7 0.17 11.8 0.2 2.0 2 1 0 2 2 2 0 NACHT domain RuvB_N PF05496.12 gi|386001730|ref|YP_005920029.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NB-ARC PF00931.22 gi|386001730|ref|YP_005920029.1| - 0.11 11.6 0.1 0.19 10.9 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|386001730|ref|YP_005920029.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|386001730|ref|YP_005920029.1| - 0.15 11.8 0.1 0.23 11.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|386001730|ref|YP_005920029.1| - 0.37 10.5 1.3 3.9 7.2 1.3 2.0 1 1 0 1 1 1 0 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|386001731|ref|YP_005920030.1| - 2e-20 73.7 0.0 2.7e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|386001731|ref|YP_005920030.1| - 8.4e-15 55.0 0.1 1.7e-14 54.1 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|386001731|ref|YP_005920030.1| - 0.00057 20.2 0.0 0.0021 18.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|386001731|ref|YP_005920030.1| - 0.0019 17.6 0.0 0.078 12.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|386001731|ref|YP_005920030.1| - 0.01 16.3 0.1 0.016 15.6 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|386001731|ref|YP_005920030.1| - 0.016 14.7 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|386001731|ref|YP_005920030.1| - 0.08 12.9 0.0 0.39 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|386001731|ref|YP_005920030.1| - 0.082 13.0 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain NB-ARC PF00931.22 gi|386001731|ref|YP_005920030.1| - 0.11 11.7 0.0 0.4 9.8 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain SMC_N PF02463.19 gi|386001731|ref|YP_005920030.1| - 0.15 11.5 0.0 1 8.8 0.0 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|386001731|ref|YP_005920030.1| - 0.21 11.4 0.0 0.39 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.22 gi|386001732|ref|YP_005920031.1| - 9.1e-22 77.7 15.4 9.1e-22 77.7 15.4 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|386001732|ref|YP_005920031.1| - 0.016 15.2 1.2 0.016 15.2 1.2 2.8 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|386001733|ref|YP_005920032.1| - 4.7e-30 104.7 18.0 1.3e-29 103.3 18.0 1.8 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Methyltransf_25 PF13649.6 gi|386001734|ref|YP_005920033.1| - 1.1e-08 35.6 0.0 3.3e-08 34.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386001734|ref|YP_005920033.1| - 2.9e-08 34.2 0.0 2.1e-06 28.3 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386001734|ref|YP_005920033.1| - 6.3e-07 29.3 0.0 8.3e-06 25.7 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386001734|ref|YP_005920033.1| - 0.00024 21.0 0.0 0.00061 19.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain GidB PF02527.15 gi|386001734|ref|YP_005920033.1| - 0.00036 19.9 0.0 0.00052 19.4 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Met_10 PF02475.16 gi|386001734|ref|YP_005920033.1| - 0.00095 19.0 0.0 0.0012 18.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.12 gi|386001734|ref|YP_005920033.1| - 0.0011 19.7 0.0 0.0028 18.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386001734|ref|YP_005920033.1| - 0.003 16.9 0.0 0.0049 16.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|386001734|ref|YP_005920033.1| - 0.021 14.8 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|386001734|ref|YP_005920033.1| - 0.023 13.7 0.0 0.034 13.1 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.19 gi|386001734|ref|YP_005920033.1| - 0.03 14.1 0.0 6.3 6.5 0.0 2.2 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|386001734|ref|YP_005920033.1| - 0.054 12.8 0.0 0.078 12.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF938 PF06080.12 gi|386001734|ref|YP_005920033.1| - 0.056 13.2 0.0 0.087 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) MTS PF05175.14 gi|386001734|ref|YP_005920033.1| - 0.16 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain SBP_bac_5 PF00496.22 gi|386001735|ref|YP_005920034.1| - 2e-67 227.8 1.3 2.8e-67 227.3 1.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ZnuA PF01297.17 gi|386001736|ref|YP_005920035.1| - 1.9e-12 47.1 0.1 2.4e-12 46.8 0.1 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic VP9 PF09625.10 gi|386001736|ref|YP_005920035.1| - 0.13 12.4 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 VP9 protein ABC-3 PF00950.17 gi|386001737|ref|YP_005920036.1| - 1.7e-48 165.4 37.0 2e-48 165.1 37.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|386001737|ref|YP_005920036.1| - 0.00082 18.5 36.4 0.0016 17.5 36.5 1.6 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|386001738|ref|YP_005920037.1| - 5.8e-24 85.2 0.0 7.6e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001738|ref|YP_005920037.1| - 6.7e-08 32.7 0.1 0.0038 17.1 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|386001738|ref|YP_005920037.1| - 0.0011 19.1 0.8 0.11 12.8 0.8 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|386001738|ref|YP_005920037.1| - 0.0032 18.0 0.1 0.0054 17.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|386001738|ref|YP_005920037.1| - 0.0094 15.6 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|386001738|ref|YP_005920037.1| - 0.012 15.0 0.1 2.7 7.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|386001738|ref|YP_005920037.1| - 0.015 15.0 0.1 0.028 14.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|386001738|ref|YP_005920037.1| - 0.072 11.9 0.1 0.52 9.0 0.1 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class T2SSE PF00437.20 gi|386001738|ref|YP_005920037.1| - 0.082 12.0 0.2 0.12 11.4 0.2 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|386001738|ref|YP_005920037.1| - 0.11 12.3 0.0 2.4 8.0 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|386001738|ref|YP_005920037.1| - 0.17 12.2 0.1 0.28 11.6 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|386001738|ref|YP_005920037.1| - 0.18 11.5 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|386001738|ref|YP_005920037.1| - 0.21 11.8 0.1 0.36 11.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain FmdE PF02663.14 gi|386001739|ref|YP_005920038.1| - 0.06 13.4 0.0 0.067 13.2 0.0 1.1 1 0 0 1 1 1 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DDE_Tnp_1 PF01609.21 gi|386001740|ref|YP_005920039.1| - 4e-19 69.1 0.3 7.8e-19 68.2 0.3 1.5 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|386001740|ref|YP_005920039.1| - 1.1e-18 67.0 0.0 2.3e-18 66.0 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_4 PF13359.6 gi|386001740|ref|YP_005920039.1| - 0.0015 18.2 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.6 gi|386001740|ref|YP_005920039.1| - 0.0016 18.7 0.0 0.0029 17.8 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain CoA_binding_3 PF13727.6 gi|386001741|ref|YP_005920040.1| - 0.00093 19.3 0.8 0.0014 18.6 0.8 1.4 1 0 0 1 1 1 1 CoA-binding domain Orf78 PF06024.12 gi|386001741|ref|YP_005920040.1| - 0.19 12.0 6.3 2.5 8.4 0.5 2.4 2 0 0 2 2 2 0 Orf78 (ac78) Glycophorin_A PF01102.18 gi|386001741|ref|YP_005920040.1| - 8 6.7 6.0 0.85 9.9 0.2 2.0 2 0 0 2 2 2 0 Glycophorin A DUF5320 PF17253.2 gi|386001742|ref|YP_005920041.1| - 4.2e-28 98.3 6.0 4.8e-28 98.1 6.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5320) FlaC_arch PF05377.11 gi|386001742|ref|YP_005920041.1| - 0.044 14.2 0.3 0.057 13.8 0.3 1.1 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF134 PF02001.16 gi|386001743|ref|YP_005920042.1| - 1.3e-19 70.6 0.3 2.9e-19 69.4 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|386001743|ref|YP_005920042.1| - 0.013 15.1 1.0 0.02 14.6 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 UbiA PF01040.18 gi|386001745|ref|YP_005920044.1| - 8.5e-26 90.8 16.4 1.1e-25 90.3 16.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Glycos_transf_2 PF00535.26 gi|386001746|ref|YP_005920045.1| - 1.8e-15 57.2 0.1 3.4e-15 56.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|386001746|ref|YP_005920045.1| - 6.8e-11 42.5 0.8 6.9e-10 39.2 0.8 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|386001746|ref|YP_005920045.1| - 5.1e-05 23.3 0.1 6.7e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|386001746|ref|YP_005920045.1| - 7.3e-05 22.3 0.0 0.00016 21.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 21 LysE PF01810.18 gi|386001747|ref|YP_005920046.1| - 9e-30 103.6 11.8 1.1e-29 103.3 11.8 1.0 1 0 0 1 1 1 1 LysE type translocator SpoIIM PF01944.17 gi|386001748|ref|YP_005920047.1| - 3.5e-30 105.1 16.9 4.5e-30 104.8 16.9 1.2 1 0 0 1 1 1 1 Stage II sporulation protein M tRNA-synt_2b PF00587.25 gi|386001749|ref|YP_005920048.1| - 9.7e-26 90.8 0.0 1.4e-25 90.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|386001749|ref|YP_005920048.1| - 1.1e-18 67.2 0.0 3.9e-18 65.4 0.1 2.0 2 0 0 2 2 2 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|386001749|ref|YP_005920048.1| - 2.8e-12 46.6 1.2 2.8e-12 46.6 1.2 2.3 3 0 0 3 3 3 1 Prolyl-tRNA synthetase, C-terminal DUF3006 PF11213.8 gi|386001749|ref|YP_005920048.1| - 0.1 12.8 0.3 1 9.6 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3006) ATP-grasp_3 PF02655.14 gi|386001750|ref|YP_005920049.1| - 1.9e-33 115.8 0.0 2.5e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|386001750|ref|YP_005920049.1| - 0.028 14.7 0.0 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 pre ATP-grasp 3 domain HicA_toxin PF07927.12 gi|386001751|ref|YP_005920050.1| - 6.1e-15 55.0 0.2 6.1e-15 55.0 0.2 1.3 2 0 0 2 2 2 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|386001752|ref|YP_005920051.1| - 8.1e-09 35.6 0.0 9.3e-09 35.5 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system ATP-grasp_3 PF02655.14 gi|386001753|ref|YP_005920052.1| - 0.016 15.2 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain CHASE3 PF05227.13 gi|386001755|ref|YP_005920054.1| - 0.065 13.1 0.1 1.5 8.7 0.1 2.0 1 1 1 2 2 2 0 CHASE3 domain HicB_lk_antitox PF15919.5 gi|386001756|ref|YP_005920055.1| - 6.9e-14 52.0 0.0 7.8e-14 51.8 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system PHD_like PF12910.7 gi|386001756|ref|YP_005920055.1| - 0.061 13.3 0.0 0.073 13.1 0.0 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system HicA_toxin PF07927.12 gi|386001757|ref|YP_005920056.1| - 3.7e-18 65.3 0.0 4.5e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicA_toxin PF07927.12 gi|386001759|ref|YP_005920058.1| - 4.1e-15 55.6 0.3 4.6e-15 55.4 0.3 1.0 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|386001760|ref|YP_005920059.1| - 1.6e-07 31.5 0.0 1.6e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicB_lk_antitox PF15919.5 gi|386001761|ref|YP_005920060.1| - 6.5e-09 36.0 0.1 6.6e-09 35.9 0.1 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system HicA_toxin PF07927.12 gi|386001762|ref|YP_005920061.1| - 3.5e-16 59.0 0.1 4.5e-16 58.6 0.1 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, PALP PF00291.25 gi|386001764|ref|YP_005920063.1| - 3.8e-27 95.5 0.0 1.2e-26 93.8 0.0 1.6 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.6 gi|386001764|ref|YP_005920063.1| - 5.1e-25 87.5 0.0 2.3e-24 85.4 0.0 2.1 2 0 0 2 2 2 1 Threonine synthase N terminus DUF1699 PF08004.11 gi|386001766|ref|YP_005920065.1| - 1.3e-59 199.5 0.3 1.5e-59 199.3 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) TIM PF00121.18 gi|386001767|ref|YP_005920066.1| - 7.2e-12 45.2 0.0 9.7e-12 44.8 0.0 1.2 1 0 0 1 1 1 1 Triosephosphate isomerase NMO PF03060.15 gi|386001767|ref|YP_005920066.1| - 0.00061 19.3 1.3 0.00061 19.3 1.3 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase ThiG PF05690.14 gi|386001767|ref|YP_005920066.1| - 0.00081 18.8 0.2 0.00081 18.8 0.2 2.0 2 1 1 3 3 3 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|386001767|ref|YP_005920066.1| - 0.039 13.0 1.6 0.079 12.0 0.7 1.8 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Acylphosphatase PF00708.18 gi|386001768|ref|YP_005920067.1| - 1.3e-22 80.0 0.1 1.4e-22 79.9 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase Fer4 PF00037.27 gi|386001769|ref|YP_005920068.1| - 7e-13 47.8 13.6 3.4e-07 29.8 2.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386001769|ref|YP_005920068.1| - 1.4e-10 41.6 20.1 9.5e-07 29.3 12.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386001769|ref|YP_005920068.1| - 1.7e-10 41.7 9.4 7.6e-05 23.6 2.4 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|386001769|ref|YP_005920068.1| - 6.2e-09 35.9 24.7 1.6e-05 24.9 14.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001769|ref|YP_005920068.1| - 1.5e-07 31.1 12.5 0.00095 19.1 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386001769|ref|YP_005920068.1| - 4.2e-07 29.8 12.3 0.0023 17.9 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|386001769|ref|YP_005920068.1| - 9.4e-07 28.9 12.7 2.2e-05 24.5 13.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386001769|ref|YP_005920068.1| - 1.8e-06 28.0 10.1 0.00017 21.8 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386001769|ref|YP_005920068.1| - 3.7e-06 27.3 23.5 0.0024 18.3 2.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386001769|ref|YP_005920068.1| - 1.3e-05 25.2 12.0 9.6e-05 22.4 12.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386001769|ref|YP_005920068.1| - 0.00046 20.9 19.6 0.0053 17.6 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|386001769|ref|YP_005920068.1| - 0.0017 18.9 13.0 0.015 15.8 2.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|386001769|ref|YP_005920068.1| - 0.0075 16.5 11.6 0.044 14.0 1.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386001769|ref|YP_005920068.1| - 0.012 16.1 10.9 0.49 11.0 2.5 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|386001769|ref|YP_005920068.1| - 0.083 13.6 9.0 1.9 9.3 1.9 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|386001769|ref|YP_005920068.1| - 0.7 10.8 15.4 0.47 11.3 3.6 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain FAD_binding_3 PF01494.19 gi|386001770|ref|YP_005920069.1| - 2.8e-18 66.3 0.7 2.7e-13 49.9 0.5 3.0 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|386001770|ref|YP_005920069.1| - 4.5e-09 35.8 0.3 7.9e-06 25.2 0.5 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|386001770|ref|YP_005920069.1| - 9.3e-09 34.8 1.1 2.3e-07 30.3 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|386001770|ref|YP_005920069.1| - 1.1e-07 31.6 4.8 2.3e-07 30.5 4.8 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|386001770|ref|YP_005920069.1| - 1.2e-07 31.9 0.0 1.3e-06 28.5 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|386001770|ref|YP_005920069.1| - 1.5e-07 30.5 0.3 2.5e-07 29.8 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.24 gi|386001770|ref|YP_005920069.1| - 2.8e-07 30.5 5.3 7.5e-05 22.5 0.3 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|386001770|ref|YP_005920069.1| - 6.4e-06 25.3 0.0 0.019 13.8 0.1 2.2 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|386001770|ref|YP_005920069.1| - 6e-05 22.4 0.9 0.00016 21.0 0.4 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|386001770|ref|YP_005920069.1| - 0.00018 20.7 0.1 0.00029 20.0 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|386001770|ref|YP_005920069.1| - 0.00051 19.4 0.3 0.0019 17.5 0.1 2.0 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|386001770|ref|YP_005920069.1| - 0.00077 19.4 0.1 0.018 15.0 0.0 2.6 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|386001770|ref|YP_005920069.1| - 0.0012 18.2 0.1 0.0021 17.4 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|386001770|ref|YP_005920069.1| - 0.012 16.2 0.2 0.012 16.2 0.2 2.2 3 0 0 3 3 1 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|386001770|ref|YP_005920069.1| - 0.012 16.1 0.2 0.049 14.1 0.2 2.3 1 1 0 1 1 1 0 XdhC Rossmann domain AlaDh_PNT_C PF01262.21 gi|386001770|ref|YP_005920069.1| - 0.036 13.4 0.1 0.073 12.4 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain SE PF08491.10 gi|386001770|ref|YP_005920069.1| - 0.075 12.1 0.1 0.13 11.3 0.1 1.4 1 0 0 1 1 1 0 Squalene epoxidase N6_Mtase PF02384.16 gi|386001772|ref|YP_005920071.1| - 1e-40 139.9 0.0 5.1e-36 124.5 0.0 2.3 2 1 0 2 2 2 2 N-6 DNA Methylase HsdM_N PF12161.8 gi|386001772|ref|YP_005920071.1| - 0.00066 20.3 0.5 0.0013 19.3 0.0 1.8 2 0 0 2 2 2 1 HsdM N-terminal domain Methyltransf_31 PF13847.6 gi|386001772|ref|YP_005920071.1| - 0.027 14.3 0.0 0.15 11.9 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain YhcG_C PF06250.11 gi|386001773|ref|YP_005920072.1| - 3.9e-64 215.2 0.1 7.1e-64 214.3 0.1 1.4 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DUF1016_N PF17761.1 gi|386001773|ref|YP_005920072.1| - 4.9e-49 166.0 1.0 8.5e-49 165.2 1.0 1.4 1 0 0 1 1 1 1 DUF1016 N-terminal domain MFS_1 PF07690.16 gi|386001774|ref|YP_005920073.1| - 5.5e-38 130.8 48.3 5.5e-38 130.8 48.3 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|386001774|ref|YP_005920073.1| - 3.4e-09 36.1 10.1 3.4e-09 36.1 10.1 2.3 2 1 0 2 2 2 2 Sugar (and other) transporter DUF5051 PF16473.5 gi|386001776|ref|YP_005920075.1| - 0.12 12.3 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 3' exoribonuclease, RNase T-like SDH_sah PF01972.16 gi|386001777|ref|YP_005920076.1| - 3.8e-109 364.1 0.2 4.6e-109 363.8 0.2 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|386001777|ref|YP_005920076.1| - 0.0074 16.2 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Clp protease DUF3906 PF13046.6 gi|386001777|ref|YP_005920076.1| - 0.071 13.2 0.4 55 4.0 0.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3906) ECH_1 PF00378.20 gi|386001777|ref|YP_005920076.1| - 0.099 11.9 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|386001777|ref|YP_005920076.1| - 0.1 12.6 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Peptidase family S49 OrfB_IS605 PF01385.19 gi|386001778|ref|YP_005920077.1| - 1.8e-22 79.8 0.0 4.3e-22 78.6 0.0 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|386001778|ref|YP_005920077.1| - 5.9e-22 77.4 0.0 1.3e-21 76.3 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|386001778|ref|YP_005920077.1| - 6.3e-17 60.8 2.9 1.4e-16 59.6 2.9 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain zf-NADH-PPase PF09297.11 gi|386001778|ref|YP_005920077.1| - 0.00082 19.0 0.3 0.0013 18.3 0.3 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|386001778|ref|YP_005920077.1| - 0.0016 17.9 0.3 0.46 10.0 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|386001778|ref|YP_005920077.1| - 0.0019 18.2 0.4 0.0033 17.4 0.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.15 gi|386001778|ref|YP_005920077.1| - 0.024 14.2 0.8 1 9.0 0.1 3.0 3 0 0 3 3 3 0 RecR protein FeoB_Cyto PF17910.1 gi|386001778|ref|YP_005920077.1| - 0.035 14.7 1.3 3.7 8.1 0.2 2.9 2 1 1 3 3 3 0 FeoB cytosolic helical domain zinc_ribbon_2 PF13240.6 gi|386001778|ref|YP_005920077.1| - 0.05 13.3 0.5 4.3 7.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.27 gi|386001778|ref|YP_005920077.1| - 0.088 12.4 0.3 1.1 9.0 0.1 2.6 2 0 0 2 2 2 0 GATA zinc finger AhpC-TSA PF00578.21 gi|386001779|ref|YP_005920078.1| - 4.7e-37 126.7 0.0 5.6e-37 126.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|386001779|ref|YP_005920078.1| - 8.6e-18 64.5 0.0 1e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin VWA PF00092.28 gi|386001780|ref|YP_005920079.1| - 1.7e-10 41.5 0.0 2.6e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain Integrin_beta PF00362.18 gi|386001780|ref|YP_005920079.1| - 1.2e-05 25.1 0.0 6.7e-05 22.7 0.0 1.9 1 1 0 1 1 1 1 Integrin beta chain VWA domain VWA_2 PF13519.6 gi|386001780|ref|YP_005920079.1| - 0.00062 20.4 0.0 0.12 13.1 0.0 2.2 2 0 0 2 2 2 2 von Willebrand factor type A domain Pribosyltran PF00156.27 gi|386001781|ref|YP_005920080.1| - 2.4e-21 75.9 1.0 3e-21 75.6 1.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|386001781|ref|YP_005920080.1| - 4.4e-06 26.3 0.0 7.4e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|386001781|ref|YP_005920080.1| - 0.0013 18.2 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase DUF4846 PF16138.5 gi|386001781|ref|YP_005920080.1| - 0.22 11.0 0.0 0.29 10.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (4846) DUF357 PF04010.13 gi|386001782|ref|YP_005920081.1| - 7.7e-17 61.1 0.1 9.2e-17 60.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) STT3 PF02516.14 gi|386001783|ref|YP_005920082.1| - 9.3e-21 74.3 18.1 5.4e-20 71.8 18.1 2.0 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|386001783|ref|YP_005920082.1| - 1.8e-15 57.0 0.1 2.9e-15 56.3 0.1 1.4 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|386001783|ref|YP_005920082.1| - 2.3e-07 31.2 13.1 2.3e-07 31.2 13.1 2.9 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase OrfB_IS605 PF01385.19 gi|386001784|ref|YP_005920083.1| - 1.8e-24 86.3 0.0 3.7e-24 85.2 0.0 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|386001784|ref|YP_005920083.1| - 5.2e-23 80.8 0.1 1.2e-22 79.5 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|386001784|ref|YP_005920083.1| - 2.7e-18 65.2 1.4 5.3e-18 64.2 1.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|386001784|ref|YP_005920083.1| - 0.0027 17.2 0.3 0.78 9.3 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|386001784|ref|YP_005920083.1| - 0.0073 16.3 0.5 0.014 15.4 0.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|386001784|ref|YP_005920083.1| - 0.024 14.3 0.5 0.062 13.0 0.5 1.7 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain RuvC_1 PF18516.1 gi|386001784|ref|YP_005920083.1| - 0.08 12.1 0.1 0.46 9.6 0.1 1.9 1 1 0 1 1 1 0 RuvC nuclease domain NB-ARC PF00931.22 gi|386001784|ref|YP_005920083.1| - 0.093 11.9 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain zinc_ribbon_2 PF13240.6 gi|386001784|ref|YP_005920083.1| - 0.29 10.9 1.2 23 4.9 1.4 2.5 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|386001784|ref|YP_005920083.1| - 0.44 10.6 3.3 0.33 10.9 1.3 1.8 2 0 0 2 2 2 0 Transposase zinc-ribbon domain RecR PF02132.15 gi|386001784|ref|YP_005920083.1| - 0.84 9.3 4.7 2.1 8.0 0.1 3.0 3 0 0 3 3 3 0 RecR protein Glycos_transf_2 PF00535.26 gi|386001785|ref|YP_005920084.1| - 6.9e-22 78.0 0.0 1.1e-21 77.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|386001785|ref|YP_005920084.1| - 0.00012 22.0 0.0 0.00016 21.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|386001785|ref|YP_005920084.1| - 0.077 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 DUF2162 PF09930.9 gi|386001785|ref|YP_005920084.1| - 1.1 8.6 9.3 0.5 9.8 2.4 2.2 1 1 1 2 2 2 0 Predicted transporter (DUF2162) Glycos_transf_1 PF00534.20 gi|386001786|ref|YP_005920085.1| - 4.7e-35 120.6 0.0 6.7e-35 120.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|386001786|ref|YP_005920085.1| - 3.4e-28 98.8 0.4 4.6e-28 98.3 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|386001786|ref|YP_005920085.1| - 5e-28 98.2 0.1 9.5e-28 97.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|386001786|ref|YP_005920085.1| - 8.9e-23 81.5 3.6 1.9e-22 80.4 3.6 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|386001786|ref|YP_005920085.1| - 3.2e-06 27.4 0.0 5.9e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|386001786|ref|YP_005920085.1| - 0.012 15.6 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|386001787|ref|YP_005920086.1| - 9.6e-37 126.2 0.0 1.6e-36 125.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|386001787|ref|YP_005920086.1| - 2e-32 112.4 0.1 5.4e-32 111.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|386001787|ref|YP_005920086.1| - 4.9e-21 75.5 0.1 1.3e-20 74.1 0.1 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|386001787|ref|YP_005920086.1| - 4.1e-18 66.3 0.2 2.6e-17 63.7 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|386001787|ref|YP_005920086.1| - 5e-13 49.3 0.0 1.1e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|386001787|ref|YP_005920086.1| - 2.6e-06 27.5 0.0 4.2e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|386001787|ref|YP_005920086.1| - 0.015 15.0 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 Starch synthase catalytic domain GDP_Man_Dehyd PF16363.5 gi|386001788|ref|YP_005920087.1| - 1.4e-68 231.8 0.0 7.4e-33 114.3 0.0 3.0 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|386001788|ref|YP_005920087.1| - 8.8e-53 179.2 0.0 1.8e-52 178.2 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|386001788|ref|YP_005920087.1| - 2.5e-08 33.4 0.0 3.9e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|386001788|ref|YP_005920087.1| - 2.2e-07 30.2 0.0 4.2e-07 29.2 0.0 1.4 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|386001788|ref|YP_005920087.1| - 2.4e-07 30.1 0.0 8.2e-06 25.1 0.0 2.1 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|386001788|ref|YP_005920087.1| - 0.00028 20.2 0.0 0.0011 18.2 0.0 1.9 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|386001788|ref|YP_005920087.1| - 0.00058 19.4 0.0 0.018 14.5 0.0 2.2 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|386001788|ref|YP_005920087.1| - 0.0026 17.7 0.0 0.0059 16.5 0.0 1.6 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|386001788|ref|YP_005920087.1| - 0.027 14.4 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding NmrA PF05368.13 gi|386001788|ref|YP_005920087.1| - 0.2 11.2 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family dTDP_sugar_isom PF00908.17 gi|386001789|ref|YP_005920088.1| - 1.2e-68 230.0 0.0 1.4e-68 229.8 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase NTP_transferase PF00483.23 gi|386001790|ref|YP_005920089.1| - 6.6e-53 179.8 0.0 8e-53 179.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|386001790|ref|YP_005920089.1| - 1.6e-08 35.1 0.0 2.4e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|386001790|ref|YP_005920089.1| - 9.4e-06 25.2 8.2 0.021 14.5 1.8 4.4 2 1 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|386001790|ref|YP_005920089.1| - 0.00011 21.3 0.0 0.00015 20.8 0.0 1.2 1 0 0 1 1 1 1 L-fucokinase CTP_transf_3 PF02348.19 gi|386001790|ref|YP_005920089.1| - 0.0025 17.8 0.0 0.0038 17.2 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase DUF4954 PF16314.5 gi|386001790|ref|YP_005920089.1| - 0.074 11.2 1.6 0.28 9.3 1.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) Hexapep_2 PF14602.6 gi|386001790|ref|YP_005920089.1| - 0.08 12.7 0.7 0.08 12.7 0.7 4.4 5 0 0 5 5 5 0 Hexapeptide repeat of succinyl-transferase DUF3516 PF12029.8 gi|386001790|ref|YP_005920089.1| - 0.29 10.2 0.1 0.48 9.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3516) GDP_Man_Dehyd PF16363.5 gi|386001791|ref|YP_005920090.1| - 8.2e-82 275.3 0.0 9.6e-82 275.0 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|386001791|ref|YP_005920090.1| - 8.2e-61 205.5 0.0 1e-60 205.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|386001791|ref|YP_005920090.1| - 1.9e-17 63.3 0.0 2.2e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|386001791|ref|YP_005920090.1| - 1e-15 57.5 0.0 1.3e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|386001791|ref|YP_005920090.1| - 5.5e-13 48.7 0.0 2.5e-12 46.5 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|386001791|ref|YP_005920090.1| - 7.3e-13 48.3 0.0 3.7e-11 42.7 0.0 2.6 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|386001791|ref|YP_005920090.1| - 2.2e-06 27.7 0.0 3.5e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|386001791|ref|YP_005920090.1| - 2.3e-05 23.9 0.8 0.002 17.6 0.4 2.8 2 1 0 2 2 2 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|386001791|ref|YP_005920090.1| - 0.0043 17.3 0.0 0.0075 16.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|386001791|ref|YP_005920090.1| - 0.014 15.0 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family KR PF08659.10 gi|386001791|ref|YP_005920090.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 KR domain RmlD_sub_bind PF04321.17 gi|386001792|ref|YP_005920091.1| - 5.1e-68 229.3 0.0 6.2e-68 229.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|386001792|ref|YP_005920091.1| - 6.5e-23 81.4 0.0 1.2e-22 80.5 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|386001792|ref|YP_005920091.1| - 1.8e-18 67.1 0.1 1.1e-16 61.1 0.1 3.0 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|386001792|ref|YP_005920091.1| - 1.8e-12 47.0 1.1 2.6e-11 43.2 0.0 2.4 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|386001792|ref|YP_005920091.1| - 5.3e-09 35.6 0.1 1.7e-07 30.7 0.0 2.6 2 1 0 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.19 gi|386001792|ref|YP_005920091.1| - 1e-08 34.5 0.0 1.8e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.10 gi|386001792|ref|YP_005920091.1| - 0.049 13.5 0.0 1.7 8.5 0.0 2.3 2 0 0 2 2 2 0 KR domain DFP PF04127.15 gi|386001792|ref|YP_005920091.1| - 0.1 12.4 0.0 1.2 8.9 0.0 2.4 3 0 0 3 3 3 0 DNA / pantothenate metabolism flavoprotein NmrA PF05368.13 gi|386001792|ref|YP_005920091.1| - 0.15 11.6 0.1 0.25 10.8 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family Glycos_transf_1 PF00534.20 gi|386001793|ref|YP_005920092.1| - 4.2e-32 111.0 0.0 6.9e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|386001793|ref|YP_005920092.1| - 1.2e-19 71.1 0.0 2.8e-19 69.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|386001793|ref|YP_005920092.1| - 9.4e-10 38.8 0.2 1.5e-09 38.0 0.2 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|386001793|ref|YP_005920092.1| - 0.0056 17.1 0.1 0.013 15.9 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Epimerase_2 PF02350.19 gi|386001793|ref|YP_005920092.1| - 0.0077 15.1 0.0 0.016 14.1 0.0 1.4 2 0 0 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_1_2 PF13524.6 gi|386001793|ref|YP_005920092.1| - 0.07 13.5 0.1 0.3 11.5 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 GDP_Man_Dehyd PF16363.5 gi|386001794|ref|YP_005920093.1| - 3.5e-40 138.4 0.0 8e-40 137.2 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|386001794|ref|YP_005920093.1| - 9.2e-40 136.6 0.0 1.1e-39 136.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|386001794|ref|YP_005920093.1| - 3.1e-07 29.7 0.0 1.3e-06 27.6 0.0 1.8 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|386001794|ref|YP_005920093.1| - 5.5e-07 29.0 0.1 3.8e-06 26.2 0.1 2.0 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|386001794|ref|YP_005920093.1| - 3.1e-05 23.3 0.4 0.011 14.9 0.4 2.7 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|386001794|ref|YP_005920093.1| - 0.011 15.2 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|386001794|ref|YP_005920093.1| - 0.017 15.0 0.0 0.12 12.3 0.0 2.2 1 1 0 1 1 1 0 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|386001794|ref|YP_005920093.1| - 0.051 12.7 0.1 0.095 11.8 0.1 1.6 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein ABC2_membrane PF01061.24 gi|386001795|ref|YP_005920094.1| - 1.5e-22 80.1 25.3 1.5e-22 80.1 25.3 1.8 1 1 1 2 2 2 1 ABC-2 type transporter Wzt_C PF14524.6 gi|386001796|ref|YP_005920095.1| - 4.3e-29 101.4 0.0 2.3e-28 99.1 0.1 2.1 2 0 0 2 2 2 1 Wzt C-terminal domain ABC_tran PF00005.27 gi|386001796|ref|YP_005920095.1| - 5.3e-23 82.0 0.0 1.8e-22 80.3 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001796|ref|YP_005920095.1| - 8.6e-09 35.6 0.6 0.00031 20.7 0.5 2.5 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|386001796|ref|YP_005920095.1| - 1.5e-05 24.6 0.0 2.9e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|386001796|ref|YP_005920095.1| - 0.00075 19.9 0.0 0.0011 19.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|386001796|ref|YP_005920095.1| - 0.001 19.0 0.2 0.48 10.3 0.1 2.3 2 0 0 2 2 2 2 NTPase AAA_23 PF13476.6 gi|386001796|ref|YP_005920095.1| - 0.0011 19.5 0.0 0.0027 18.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|386001796|ref|YP_005920095.1| - 0.0043 16.8 0.1 0.018 14.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|386001796|ref|YP_005920095.1| - 0.021 14.3 0.1 0.052 13.0 0.0 1.6 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|386001796|ref|YP_005920095.1| - 0.022 14.5 0.0 0.031 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 gi|386001796|ref|YP_005920095.1| - 0.024 13.6 0.1 0.037 13.0 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|386001796|ref|YP_005920095.1| - 0.039 14.4 0.0 0.34 11.3 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|386001796|ref|YP_005920095.1| - 0.043 13.7 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|386001796|ref|YP_005920095.1| - 0.055 13.4 0.0 0.14 12.0 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 gi|386001796|ref|YP_005920095.1| - 0.11 12.8 0.0 0.25 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain Methyltransf_25 PF13649.6 gi|386001797|ref|YP_005920096.1| - 2.7e-10 40.8 0.1 1.2e-09 38.7 0.0 2.2 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386001797|ref|YP_005920096.1| - 1.9e-08 34.9 0.0 6.1e-08 33.2 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386001797|ref|YP_005920096.1| - 3e-08 33.7 0.1 1.1e-07 31.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386001797|ref|YP_005920096.1| - 8.3e-07 28.9 0.2 7.8e-06 25.8 0.0 2.5 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386001797|ref|YP_005920096.1| - 1.3e-05 25.9 1.3 0.00045 20.9 0.0 3.0 3 0 0 3 3 2 1 Methyltransferase domain Apolipoprotein PF01442.18 gi|386001797|ref|YP_005920096.1| - 6.5e-05 22.9 10.6 0.0062 16.4 1.3 2.8 2 1 1 3 3 3 2 Apolipoprotein A1/A4/E domain DUF1640 PF07798.11 gi|386001797|ref|YP_005920096.1| - 0.00061 19.9 14.9 0.45 10.5 9.7 3.4 2 1 0 2 2 2 1 Protein of unknown function (DUF1640) DUF5403 PF17395.2 gi|386001797|ref|YP_005920096.1| - 0.0013 19.0 0.5 19 5.6 0.0 4.3 1 1 3 4 4 4 0 Family of unknown function (DUF5403) Baculo_PEP_C PF04513.12 gi|386001797|ref|YP_005920096.1| - 0.0021 18.1 5.4 1.2 9.1 0.5 3.2 2 1 0 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus KAP_NTPase PF07693.14 gi|386001797|ref|YP_005920096.1| - 0.014 14.7 0.1 0.028 13.7 0.1 1.5 1 1 0 1 1 1 0 KAP family P-loop domain ATP-synt_B PF00430.18 gi|386001797|ref|YP_005920096.1| - 0.048 13.7 10.4 1.4 9.0 1.5 2.6 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) Methyltransf_32 PF13679.6 gi|386001797|ref|YP_005920096.1| - 0.051 13.6 2.7 0.055 13.5 0.0 2.3 3 1 0 3 3 2 0 Methyltransferase domain Mitofilin PF09731.9 gi|386001797|ref|YP_005920096.1| - 0.063 12.1 12.8 0.065 12.1 11.4 1.7 1 1 0 1 1 1 0 Mitochondrial inner membrane protein UPF0146 PF03686.13 gi|386001797|ref|YP_005920096.1| - 0.063 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Phasin PF05597.11 gi|386001797|ref|YP_005920096.1| - 0.12 12.4 3.9 1.3 9.0 0.5 2.7 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Phage_Mu_Gam PF07352.12 gi|386001797|ref|YP_005920096.1| - 0.15 12.0 5.0 1.2 9.0 0.2 2.9 1 1 2 3 3 3 0 Bacteriophage Mu Gam like protein T2SSN PF01203.19 gi|386001797|ref|YP_005920096.1| - 0.16 12.2 0.2 0.96 9.6 0.1 1.8 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein N DUF3658 PF12395.8 gi|386001797|ref|YP_005920096.1| - 0.2 11.6 6.1 50 3.9 0.1 4.7 2 1 4 6 6 6 0 Protein of unknown function Nbl1_Borealin_N PF10444.9 gi|386001797|ref|YP_005920096.1| - 0.72 9.5 10.1 1.4 8.6 0.7 3.9 1 1 3 4 4 4 0 Nbl1 / Borealin N terminal DUF1682 PF07946.14 gi|386001797|ref|YP_005920096.1| - 1.1 8.4 8.4 12 5.0 1.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1682) DUF4407 PF14362.6 gi|386001797|ref|YP_005920096.1| - 1.3 8.3 9.4 9.9 5.4 9.4 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Prominin PF05478.11 gi|386001797|ref|YP_005920096.1| - 2.3 6.0 8.6 0.28 9.1 0.5 2.4 1 1 2 3 3 3 0 Prominin V-ATPase_G_2 PF16999.5 gi|386001797|ref|YP_005920096.1| - 2.6 8.5 6.3 7.8 7.0 0.7 2.9 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit Halo_GVPC PF05465.13 gi|386001797|ref|YP_005920096.1| - 2.9 8.2 15.9 4.7 7.6 0.4 4.5 4 0 0 4 4 4 0 Halobacterial gas vesicle protein C (GVPC) repeat DUF883 PF05957.13 gi|386001797|ref|YP_005920096.1| - 3.6 8.3 9.1 18 6.0 0.3 3.5 2 1 3 5 5 4 0 Bacterial protein of unknown function (DUF883) Glycos_transf_1 PF00534.20 gi|386001798|ref|YP_005920097.1| - 3.1e-40 137.5 0.2 8.3e-27 93.8 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|386001798|ref|YP_005920097.1| - 7.2e-33 113.9 0.0 5.5e-19 68.9 0.0 2.5 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|386001798|ref|YP_005920097.1| - 6.5e-08 32.9 0.0 0.00015 22.1 0.0 2.5 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|386001798|ref|YP_005920097.1| - 1.1e-06 28.7 0.0 7.6e-06 26.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_transf_20 PF00982.21 gi|386001798|ref|YP_005920097.1| - 0.0021 16.8 0.2 0.029 13.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyltransferase family 20 Epimerase_2 PF02350.19 gi|386001798|ref|YP_005920097.1| - 0.0022 16.9 0.0 0.0038 16.1 0.0 1.3 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase EamA PF00892.20 gi|386001799|ref|YP_005920098.1| - 3.8e-07 30.3 3.5 4.3e-07 30.2 3.5 1.0 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|386001799|ref|YP_005920098.1| - 0.0068 15.5 0.8 0.0068 15.5 0.8 1.0 1 0 0 1 1 1 1 Magnesium transporter NIPA TMEM234 PF10639.9 gi|386001799|ref|YP_005920098.1| - 0.0069 16.4 0.4 0.0077 16.3 0.4 1.0 1 0 0 1 1 1 1 Putative transmembrane family 234 Nuc_sug_transp PF04142.15 gi|386001799|ref|YP_005920098.1| - 0.016 14.4 1.3 0.016 14.4 1.3 1.0 1 0 0 1 1 1 0 Nucleotide-sugar transporter DUF202 PF02656.15 gi|386001799|ref|YP_005920098.1| - 0.18 12.3 2.1 0.22 12.0 2.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) Methyltransf_11 PF08241.12 gi|386001800|ref|YP_005920099.1| - 3.2e-22 79.0 0.0 5.4e-22 78.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386001800|ref|YP_005920099.1| - 6.4e-18 65.3 0.0 1.3e-17 64.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386001800|ref|YP_005920099.1| - 7.2e-16 58.5 0.0 1.2e-15 57.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386001800|ref|YP_005920099.1| - 9.1e-15 54.8 0.0 1.3e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386001800|ref|YP_005920099.1| - 4.9e-12 46.4 0.0 9.5e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386001800|ref|YP_005920099.1| - 8.4e-10 38.4 0.0 1.2e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|386001800|ref|YP_005920099.1| - 1.1e-07 32.0 0.0 2.4e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|386001800|ref|YP_005920099.1| - 0.00031 19.4 0.0 0.00058 18.5 0.0 1.5 1 1 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase DREV PF05219.12 gi|386001800|ref|YP_005920099.1| - 0.0021 17.2 0.0 0.0028 16.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase CMAS PF02353.20 gi|386001800|ref|YP_005920099.1| - 0.013 14.8 0.0 0.023 14.0 0.0 1.4 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|386001800|ref|YP_005920099.1| - 0.015 14.9 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW TPMT PF05724.11 gi|386001800|ref|YP_005920099.1| - 0.044 13.4 0.0 0.058 13.0 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) MTS PF05175.14 gi|386001800|ref|YP_005920099.1| - 0.049 13.2 0.0 0.084 12.4 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain NNMT_PNMT_TEMT PF01234.17 gi|386001800|ref|YP_005920099.1| - 0.07 12.3 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family Methyltransf_32 PF13679.6 gi|386001800|ref|YP_005920099.1| - 0.085 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_2 PF00535.26 gi|386001802|ref|YP_005920101.1| - 3.1e-23 82.4 0.1 3.8e-23 82.1 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|386001802|ref|YP_005920101.1| - 6.3e-08 32.8 0.0 7.9e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|386001802|ref|YP_005920101.1| - 2.4e-05 24.0 0.1 3.8e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Peptidase_C1 PF00112.23 gi|386001803|ref|YP_005920102.1| - 4.5e-45 154.4 5.5 6.7e-45 153.8 5.5 1.2 1 0 0 1 1 1 1 Papain family cysteine protease DUF1964 PF09244.10 gi|386001803|ref|YP_005920102.1| - 0.00042 20.7 1.1 12 6.4 0.1 4.3 4 0 0 4 4 4 2 Domain of unknown function (DUF1964) ABC_transp_aux PF09822.9 gi|386001803|ref|YP_005920102.1| - 0.03 13.8 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system Peptidase_C1 PF00112.23 gi|386001804|ref|YP_005920103.1| - 1.5e-43 149.4 1.7 2.3e-43 148.8 1.7 1.2 1 0 0 1 1 1 1 Papain family cysteine protease ABC_transp_aux PF09822.9 gi|386001804|ref|YP_005920103.1| - 0.0054 16.2 0.0 0.0086 15.6 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF1964 PF09244.10 gi|386001804|ref|YP_005920103.1| - 0.01 16.2 0.3 80 3.8 0.0 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF1964) ThuA PF06283.11 gi|386001804|ref|YP_005920103.1| - 0.1 12.8 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Trehalose utilisation Peptidase_C25 PF01364.18 gi|386001805|ref|YP_005920104.1| - 1.6e-50 172.4 0.1 2.2e-50 172.0 0.1 1.1 1 0 0 1 1 1 1 Peptidase family C25 Propeptide_C25 PF08126.11 gi|386001805|ref|YP_005920104.1| - 1.9e-20 72.9 0.0 3.2e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 Propeptide_C25 PKD PF00801.20 gi|386001805|ref|YP_005920104.1| - 0.0034 17.2 2.2 0.006 16.4 0.9 2.1 2 0 0 2 2 2 1 PKD domain RHS_repeat PF05593.14 gi|386001805|ref|YP_005920104.1| - 8.7 7.0 8.6 70 4.1 5.0 3.7 3 1 0 3 3 3 0 RHS Repeat PALP PF00291.25 gi|386001806|ref|YP_005920105.1| - 2.2e-33 115.9 2.4 2.9e-33 115.6 2.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|386001806|ref|YP_005920105.1| - 0.12 12.6 0.5 0.29 11.3 0.2 1.8 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABC_tran PF00005.27 gi|386001807|ref|YP_005920106.1| - 5.1e-13 49.7 0.0 8.5e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001807|ref|YP_005920106.1| - 2.7e-07 30.7 0.1 0.011 15.5 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|386001807|ref|YP_005920106.1| - 3.9e-05 24.1 0.0 6.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|386001807|ref|YP_005920106.1| - 0.00039 19.9 0.1 0.16 11.3 0.0 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|386001807|ref|YP_005920106.1| - 0.00059 20.1 0.1 0.0038 17.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|386001807|ref|YP_005920106.1| - 0.0033 16.9 0.1 0.044 13.2 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_29 PF13555.6 gi|386001807|ref|YP_005920106.1| - 0.0038 16.9 0.2 0.011 15.4 0.1 1.9 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|386001807|ref|YP_005920106.1| - 0.0076 16.8 0.0 0.011 16.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|386001807|ref|YP_005920106.1| - 0.0078 16.1 0.0 0.4 10.6 0.0 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|386001807|ref|YP_005920106.1| - 0.026 14.3 0.2 0.088 12.5 0.2 2.0 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|386001807|ref|YP_005920106.1| - 0.062 12.1 0.0 0.096 11.5 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein RsgA_GTPase PF03193.16 gi|386001807|ref|YP_005920106.1| - 0.075 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|386001807|ref|YP_005920106.1| - 0.12 12.4 0.1 0.41 10.7 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase KAP_NTPase PF07693.14 gi|386001807|ref|YP_005920106.1| - 0.2 10.8 0.0 0.49 9.6 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain AAA_35 PF14516.6 gi|386001807|ref|YP_005920106.1| - 0.25 10.2 0.0 0.36 9.6 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain DUF1918 PF08940.11 gi|386001807|ref|YP_005920106.1| - 0.36 10.5 2.5 9.6 5.9 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1918) cobW PF02492.19 gi|386001808|ref|YP_005920107.1| - 3.8e-12 46.2 0.0 5.8e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|386001808|ref|YP_005920107.1| - 0.00046 19.9 0.0 0.00077 19.1 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|386001808|ref|YP_005920107.1| - 0.00067 20.2 0.0 0.0013 19.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|386001808|ref|YP_005920107.1| - 0.00074 19.9 0.0 0.0014 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|386001808|ref|YP_005920107.1| - 0.00086 19.4 0.0 0.001 19.1 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|386001808|ref|YP_005920107.1| - 0.00097 18.2 0.2 0.056 12.4 0.1 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|386001808|ref|YP_005920107.1| - 0.0025 17.1 0.1 0.0049 16.2 0.1 1.6 1 1 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|386001808|ref|YP_005920107.1| - 0.0034 17.8 0.4 0.013 15.9 0.4 2.2 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 gi|386001808|ref|YP_005920107.1| - 0.0093 15.2 0.0 0.012 14.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|386001808|ref|YP_005920107.1| - 0.037 13.8 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|386001808|ref|YP_005920107.1| - 0.045 13.5 0.1 0.098 12.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|386001808|ref|YP_005920107.1| - 0.052 13.5 0.0 0.093 12.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B LpxK PF02606.14 gi|386001808|ref|YP_005920107.1| - 0.054 12.6 0.4 0.089 11.9 0.2 1.4 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase ATP_bind_1 PF03029.17 gi|386001808|ref|YP_005920107.1| - 0.063 13.0 0.0 0.23 11.2 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein KAP_NTPase PF07693.14 gi|386001808|ref|YP_005920107.1| - 0.067 12.4 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain MipZ PF09140.11 gi|386001808|ref|YP_005920107.1| - 0.076 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ NACHT PF05729.12 gi|386001808|ref|YP_005920107.1| - 0.11 12.4 0.1 0.76 9.7 0.0 2.0 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.15 gi|386001808|ref|YP_005920107.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_33 PF13671.6 gi|386001808|ref|YP_005920107.1| - 0.14 12.3 0.1 0.22 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|386001808|ref|YP_005920107.1| - 0.14 11.4 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain KTI12 PF08433.10 gi|386001808|ref|YP_005920107.1| - 0.19 11.2 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PRK PF00485.18 gi|386001808|ref|YP_005920107.1| - 0.23 11.1 0.0 0.35 10.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family FeS PF04060.13 gi|386001809|ref|YP_005920108.1| - 3.1e-12 45.9 3.0 4.2e-12 45.5 0.5 2.3 2 0 0 2 2 2 1 Putative Fe-S cluster TPP_enzyme_N PF02776.18 gi|386001811|ref|YP_005920110.1| - 1.6e-11 44.1 0.2 3.7e-11 42.9 0.2 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CdvA PF18822.1 gi|386001812|ref|YP_005920111.1| - 0.041 13.7 0.2 0.072 12.9 0.2 1.4 1 1 0 1 1 1 0 CdvA-like coiled-coil domain PMC2NT PF08066.12 gi|386001812|ref|YP_005920111.1| - 0.095 13.4 0.0 0.18 12.5 0.0 1.7 1 1 0 1 1 1 0 PMC2NT (NUC016) domain TPP_enzyme_C PF02775.21 gi|386001813|ref|YP_005920112.1| - 1.1e-19 70.7 0.0 1.9e-19 69.9 0.0 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NosD PF05048.13 gi|386001814|ref|YP_005920113.1| - 1.8e-144 479.2 198.4 3.1e-28 98.7 18.9 9.6 1 1 6 8 8 8 8 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386001814|ref|YP_005920113.1| - 2.1e-123 407.9 216.8 1.2e-19 70.7 20.1 10.3 3 3 7 11 11 11 11 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|386001814|ref|YP_005920113.1| - 6.7 6.5 93.2 0.12 12.2 0.9 10.4 2 2 6 11 11 11 0 Pectate lyase superfamily protein Peptidase_C39_2 PF13529.6 gi|386001815|ref|YP_005920114.1| - 0.035 14.7 0.1 0.063 13.8 0.1 1.5 1 0 0 1 1 1 0 Peptidase_C39 like family Peptidase_C39_2 PF13529.6 gi|386001816|ref|YP_005920115.1| - 0.0024 18.4 0.1 0.0041 17.7 0.1 1.4 1 0 0 1 1 1 1 Peptidase_C39 like family Peptidase_C1 PF00112.23 gi|386001816|ref|YP_005920115.1| - 0.021 14.9 1.0 5.9 6.9 0.9 2.3 1 1 1 2 2 2 0 Papain family cysteine protease NosD PF05048.13 gi|386001817|ref|YP_005920116.1| - 1.3e-59 201.4 19.4 5.5e-32 110.9 10.9 2.5 2 0 0 2 2 2 2 Periplasmic copper-binding protein (NosD) DUF11 PF01345.18 gi|386001817|ref|YP_005920116.1| - 1.3e-31 108.7 8.2 5.5e-08 33.0 0.1 5.2 6 0 0 6 6 6 4 Domain of unknown function DUF11 Beta_helix PF13229.6 gi|386001817|ref|YP_005920116.1| - 1.4e-16 60.8 24.7 6.6e-09 35.8 5.3 2.7 2 0 0 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|386001817|ref|YP_005920116.1| - 3.2e-06 26.7 12.3 0.0014 18.0 1.4 3.1 2 1 0 2 2 2 2 Protein of unknown function (DUF1565) Chlam_OMP6 PF03504.13 gi|386001817|ref|YP_005920116.1| - 0.0023 18.2 0.0 1.9 8.8 0.0 2.9 2 0 0 2 2 2 2 Chlamydia cysteine-rich outer membrane protein 6 HcyBio PF01837.16 gi|386001818|ref|YP_005920117.1| - 4.3e-69 233.0 0.0 4.9e-69 232.8 0.0 1.0 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4_6 PF12837.7 gi|386001818|ref|YP_005920117.1| - 0.00012 22.0 11.4 0.00072 19.5 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386001818|ref|YP_005920117.1| - 0.00042 20.2 13.3 0.044 13.9 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|386001818|ref|YP_005920117.1| - 0.00048 19.8 11.2 0.038 13.8 0.4 3.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386001818|ref|YP_005920117.1| - 0.0025 18.2 3.5 0.097 13.1 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386001818|ref|YP_005920117.1| - 0.0053 16.9 9.2 0.024 14.8 9.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386001818|ref|YP_005920117.1| - 0.0057 17.2 11.3 0.15 12.7 13.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386001818|ref|YP_005920117.1| - 0.025 14.7 5.1 0.11 12.7 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|386001818|ref|YP_005920117.1| - 0.039 14.1 0.9 0.063 13.5 0.9 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001818|ref|YP_005920117.1| - 0.13 12.4 13.6 0.72 10.0 2.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386001818|ref|YP_005920117.1| - 0.76 10.6 6.3 0.6 10.9 0.2 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|386001818|ref|YP_005920117.1| - 1.1 10.3 12.4 5.9 7.9 5.5 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|386001818|ref|YP_005920117.1| - 6.3 7.6 15.0 0.29 11.8 1.8 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain HcyBio PF01837.16 gi|386001819|ref|YP_005920118.1| - 3.5e-12 45.8 0.0 4.2e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation DUF4106 PF13388.6 gi|386001819|ref|YP_005920118.1| - 0.023 13.9 0.0 0.027 13.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) DUF348 PF03990.14 gi|386001819|ref|YP_005920118.1| - 0.13 12.0 0.7 0.19 11.5 0.7 1.3 1 0 0 1 1 1 0 G5-linked-Ubiquitin-like domain DUF515 PF04415.12 gi|386001819|ref|YP_005920118.1| - 0.14 10.5 0.0 0.14 10.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Methyltransf_11 PF08241.12 gi|386001820|ref|YP_005920119.1| - 3.3e-18 66.1 0.1 3e-17 63.0 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386001820|ref|YP_005920119.1| - 1e-16 61.4 0.1 1.3e-08 35.4 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386001820|ref|YP_005920119.1| - 1.6e-13 50.8 0.0 2e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386001820|ref|YP_005920119.1| - 2.2e-10 41.2 0.0 1e-09 39.0 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386001820|ref|YP_005920119.1| - 3.2e-09 36.8 0.0 0.0019 18.0 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386001820|ref|YP_005920119.1| - 8.9e-09 35.0 0.0 7.2e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 ubiE/COQ5 methyltransferase family TPMT PF05724.11 gi|386001820|ref|YP_005920119.1| - 1.2e-05 25.1 0.0 8.1e-05 22.4 0.0 1.9 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_9 PF08003.11 gi|386001820|ref|YP_005920119.1| - 0.034 13.1 0.0 0.58 9.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.15 gi|386001820|ref|YP_005920119.1| - 0.056 13.3 0.0 0.58 10.0 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase MetW PF07021.12 gi|386001820|ref|YP_005920119.1| - 0.072 12.7 0.0 0.37 10.3 0.0 1.9 2 0 0 2 2 2 0 Methionine biosynthesis protein MetW MTS PF05175.14 gi|386001820|ref|YP_005920119.1| - 0.09 12.3 0.0 1.3 8.6 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase small domain CheR PF01739.18 gi|386001820|ref|YP_005920119.1| - 0.23 10.9 0.0 0.72 9.3 0.0 1.7 2 1 0 2 2 2 0 CheR methyltransferase, SAM binding domain TAT_signal PF10518.9 gi|386001821|ref|YP_005920120.1| - 0.75 9.7 5.3 1.5 8.8 5.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DNA_photolyase PF00875.18 gi|386001823|ref|YP_005920122.1| - 1.4e-31 109.7 0.2 3.4e-31 108.5 0.2 1.7 1 0 0 1 1 1 1 DNA photolyase Usp PF00582.26 gi|386001823|ref|YP_005920122.1| - 0.053 14.0 0.1 0.18 12.3 0.1 1.9 1 1 0 1 1 1 0 Universal stress protein family OrfB_Zn_ribbon PF07282.11 gi|386001824|ref|YP_005920123.1| - 1.2e-22 79.5 0.9 3e-22 78.3 0.9 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|386001824|ref|YP_005920123.1| - 6.3e-15 55.5 1.2 1.2e-14 54.5 1.2 1.5 1 0 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|386001824|ref|YP_005920123.1| - 0.0008 19.7 1.7 0.0019 18.5 1.7 1.6 1 0 0 1 1 1 1 C1 domain HypA PF01155.19 gi|386001824|ref|YP_005920123.1| - 0.0049 16.9 0.1 0.0095 15.9 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|386001824|ref|YP_005920123.1| - 0.0059 16.5 1.4 0.016 15.1 1.4 1.7 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_RNApol_7kD PF03604.13 gi|386001824|ref|YP_005920123.1| - 0.099 12.3 4.2 0.36 10.5 4.2 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.9 gi|386001824|ref|YP_005920123.1| - 0.12 12.5 3.6 0.82 9.8 0.3 2.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|386001824|ref|YP_005920123.1| - 0.32 10.7 3.8 2.8 7.7 0.2 2.6 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_2 PF13240.6 gi|386001824|ref|YP_005920123.1| - 1.4 8.7 6.0 40 4.1 6.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2_11 PF16622.5 gi|386001824|ref|YP_005920123.1| - 4.4 7.1 9.6 1.4 8.8 0.1 2.8 3 0 0 3 3 3 0 zinc-finger C2H2-type DZR PF12773.7 gi|386001825|ref|YP_005920124.1| - 3.2e-05 23.8 0.9 3.7e-05 23.6 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|386001825|ref|YP_005920124.1| - 4.8e-05 23.4 2.0 7.9e-05 22.7 2.0 1.3 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|386001825|ref|YP_005920124.1| - 0.00022 21.2 0.6 0.00023 21.1 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TFIIS_C PF01096.18 gi|386001825|ref|YP_005920124.1| - 0.003 17.4 3.0 0.44 10.5 0.2 2.1 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) DUF4428 PF14471.6 gi|386001825|ref|YP_005920124.1| - 0.004 17.0 1.7 0.01 15.8 1.7 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4428) zinc-ribbons_6 PF07191.12 gi|386001825|ref|YP_005920124.1| - 0.0095 15.9 0.3 0.012 15.6 0.3 1.2 1 0 0 1 1 1 1 zinc-ribbons TackOD1 PF18551.1 gi|386001825|ref|YP_005920124.1| - 0.011 15.5 0.3 0.011 15.5 0.3 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Prok-RING_1 PF14446.6 gi|386001825|ref|YP_005920124.1| - 0.018 14.9 0.7 0.025 14.5 0.7 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF702 PF05142.12 gi|386001825|ref|YP_005920124.1| - 0.019 15.5 2.9 0.021 15.3 2.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF702) zf-C3HC4_3 PF13920.6 gi|386001825|ref|YP_005920124.1| - 0.02 14.8 1.3 0.025 14.4 1.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Rubredoxin_2 PF18073.1 gi|386001825|ref|YP_005920124.1| - 0.022 14.5 7.1 0.17 11.6 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-trcl PF13451.6 gi|386001825|ref|YP_005920124.1| - 0.022 14.6 4.3 0.56 10.1 0.2 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|386001825|ref|YP_005920124.1| - 0.031 13.8 4.5 0.53 9.8 0.5 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_5 PF14634.6 gi|386001825|ref|YP_005920124.1| - 0.036 14.0 1.3 0.05 13.6 1.3 1.2 1 0 0 1 1 1 0 zinc-RING finger domain Zn_ribbon_SprT PF17283.2 gi|386001825|ref|YP_005920124.1| - 0.037 13.9 1.9 6.4 6.8 0.0 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|386001825|ref|YP_005920124.1| - 0.041 13.6 4.0 0.066 12.9 4.0 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|386001825|ref|YP_005920124.1| - 0.041 13.8 1.7 0.041 13.8 1.7 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|386001825|ref|YP_005920124.1| - 0.059 13.4 1.1 0.079 13.0 1.1 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain CcmH PF03918.14 gi|386001825|ref|YP_005920124.1| - 0.08 12.2 0.1 0.08 12.2 0.1 1.1 1 0 0 1 1 1 0 Cytochrome C biogenesis protein NRDD PF13597.6 gi|386001825|ref|YP_005920124.1| - 0.1 11.4 0.9 0.12 11.2 0.9 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase A2L_zn_ribbon PF08792.10 gi|386001825|ref|YP_005920124.1| - 0.12 12.1 0.2 0.12 12.1 0.2 2.3 3 0 0 3 3 3 0 A2L zinc ribbon domain FYDLN_acid PF09538.10 gi|386001825|ref|YP_005920124.1| - 0.12 13.1 0.6 0.13 12.9 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-Sec23_Sec24 PF04810.15 gi|386001825|ref|YP_005920124.1| - 0.12 12.4 2.5 0.84 9.7 2.7 1.9 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger OrfB_Zn_ribbon PF07282.11 gi|386001825|ref|YP_005920124.1| - 0.17 11.8 3.4 0.3 11.0 3.4 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.6 gi|386001825|ref|YP_005920124.1| - 0.22 11.3 6.0 10 6.0 5.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|386001825|ref|YP_005920124.1| - 0.25 10.8 5.0 1.2 8.6 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|386001825|ref|YP_005920124.1| - 0.29 11.6 4.3 1.8 9.0 0.2 2.6 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 zf_UBZ PF18439.1 gi|386001825|ref|YP_005920124.1| - 0.34 10.6 2.9 0.71 9.5 0.2 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|386001825|ref|YP_005920124.1| - 0.49 10.4 5.8 0.87 9.6 1.1 2.1 1 1 2 3 3 3 0 Transposase zinc-ribbon domain DUF2098 PF09871.9 gi|386001827|ref|YP_005920126.1| - 8.8e-26 90.1 0.4 9.8e-26 89.9 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) DUF2117 PF09890.9 gi|386001828|ref|YP_005920127.1| - 3e-61 206.6 0.0 4.7e-61 206.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) OrfB_Zn_ribbon PF07282.11 gi|386001829|ref|YP_005920128.1| - 2.7e-23 81.7 0.0 6.4e-23 80.5 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|386001829|ref|YP_005920128.1| - 4.2e-21 75.4 0.0 9.2e-21 74.3 0.0 1.5 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|386001829|ref|YP_005920128.1| - 2.1e-17 62.4 0.8 4.1e-17 61.4 0.8 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-NADH-PPase PF09297.11 gi|386001829|ref|YP_005920128.1| - 0.00055 19.5 0.3 0.00092 18.8 0.3 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|386001829|ref|YP_005920128.1| - 0.0034 17.4 0.3 0.0061 16.5 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|386001829|ref|YP_005920128.1| - 0.018 14.5 0.3 0.96 9.0 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding RecR PF02132.15 gi|386001829|ref|YP_005920128.1| - 0.046 13.3 4.0 0.4 10.3 0.1 3.3 3 0 0 3 3 3 0 RecR protein zinc_ribbon_2 PF13240.6 gi|386001829|ref|YP_005920128.1| - 0.055 13.2 0.3 5.9 6.7 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.27 gi|386001829|ref|YP_005920128.1| - 0.093 12.4 0.3 0.69 9.6 0.0 2.3 2 0 0 2 2 2 0 GATA zinc finger SpoIIE PF07228.12 gi|386001830|ref|YP_005920129.1| - 8.2e-38 130.3 0.2 1.8e-37 129.2 0.2 1.6 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) dCache_1 PF02743.18 gi|386001830|ref|YP_005920129.1| - 1.1e-17 64.7 0.0 1.7e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Cache domain HAMP PF00672.25 gi|386001830|ref|YP_005920129.1| - 0.012 16.0 4.1 0.026 14.9 1.4 2.9 3 0 0 3 3 3 0 HAMP domain Sigma70_r4 PF04545.16 gi|386001831|ref|YP_005920130.1| - 0.091 12.3 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 AAA_3 PF07726.11 gi|386001832|ref|YP_005920131.1| - 4.3e-63 211.0 0.2 9.2e-63 209.9 0.1 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|386001832|ref|YP_005920131.1| - 3.2e-16 58.9 0.0 6.9e-16 57.9 0.0 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|386001832|ref|YP_005920131.1| - 6.6e-12 45.6 0.0 1.1e-11 44.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|386001832|ref|YP_005920131.1| - 1.3e-07 32.1 0.0 2.4e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|386001832|ref|YP_005920131.1| - 1.2e-06 27.7 0.0 3.6e-06 26.2 0.0 1.8 1 1 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|386001832|ref|YP_005920131.1| - 0.00021 21.1 0.2 0.0019 17.9 0.2 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|386001832|ref|YP_005920131.1| - 0.0007 19.3 0.1 0.0061 16.3 0.1 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|386001832|ref|YP_005920131.1| - 0.0041 16.5 1.5 0.048 13.0 0.3 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|386001832|ref|YP_005920131.1| - 0.024 14.8 0.0 0.039 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF58 PF01882.18 gi|386001833|ref|YP_005920132.1| - 1.1e-18 67.3 0.1 2.7e-18 66.0 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF58 Lar_N PF09861.9 gi|386001834|ref|YP_005920133.1| - 4e-52 176.4 0.0 1.5e-51 174.5 0.0 1.8 2 0 0 2 2 2 1 Lactate racemase N-terminal domain DUF362 PF04015.12 gi|386001834|ref|YP_005920133.1| - 0.086 13.1 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF362) DUF772 PF05598.11 gi|386001835|ref|YP_005920134.1| - 6.2e-22 77.4 0.1 1.5e-21 76.2 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|386001835|ref|YP_005920134.1| - 2.1e-14 53.7 0.4 5.3e-14 52.4 0.4 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|386001835|ref|YP_005920134.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease DUF1699 PF08004.11 gi|386001836|ref|YP_005920135.1| - 1.4e-57 192.9 0.0 1.6e-57 192.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Tir_receptor_M PF03549.14 gi|386001836|ref|YP_005920135.1| - 0.19 12.1 0.0 0.32 11.3 0.0 1.4 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) intimin-binding domain Phospholip_B PF04916.13 gi|386001837|ref|YP_005920136.1| - 2.7e-13 49.4 0.5 2.5e-12 46.2 0.2 2.1 1 1 1 2 2 2 2 Phospholipase B Rhodanese PF00581.20 gi|386001838|ref|YP_005920137.1| - 8.7e-17 61.6 0.0 4.7e-08 33.5 0.1 2.3 2 0 0 2 2 2 2 Rhodanese-like domain Aldo_ket_red PF00248.21 gi|386001839|ref|YP_005920138.1| - 8.6e-18 64.5 0.0 2.2e-15 56.6 0.0 2.1 2 0 0 2 2 2 2 Aldo/keto reductase family ABM PF03992.16 gi|386001840|ref|YP_005920139.1| - 0.085 13.0 0.0 0.11 12.6 0.0 1.3 1 1 0 1 1 1 0 Antibiotic biosynthesis monooxygenase Acetyltransf_3 PF13302.7 gi|386001841|ref|YP_005920140.1| - 2.8e-12 47.5 0.0 3.5e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|386001841|ref|YP_005920140.1| - 8.8e-06 25.9 0.0 1.2e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|386001841|ref|YP_005920140.1| - 0.11 12.9 0.0 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain LCM PF04072.14 gi|386001842|ref|YP_005920141.1| - 2.3e-14 53.8 0.0 3.3e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase Nitroreductase PF00881.24 gi|386001843|ref|YP_005920142.1| - 1.8e-12 47.6 0.8 3.2e-05 24.1 0.1 3.5 2 2 1 3 3 3 3 Nitroreductase family TM1586_NiRdase PF14512.6 gi|386001843|ref|YP_005920142.1| - 3.6e-07 30.0 0.0 0.00023 20.8 0.0 2.6 3 0 0 3 3 3 2 Putative TM nitroreductase NurA PF09376.10 gi|386001844|ref|YP_005920143.1| - 1.5e-07 31.4 0.3 0.02 14.6 0.0 2.6 2 1 0 2 2 2 2 NurA domain DUF87 PF01935.17 gi|386001845|ref|YP_005920144.1| - 5.2e-18 66.0 0.0 8.3e-18 65.3 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|386001845|ref|YP_005920144.1| - 0.012 15.0 0.0 1.1 8.5 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF853 PF05872.12 gi|386001845|ref|YP_005920144.1| - 0.098 11.2 0.0 0.16 10.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|386001845|ref|YP_005920144.1| - 0.15 10.9 0.0 0.62 8.9 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Metallophos PF00149.28 gi|386001846|ref|YP_005920145.1| - 1.1e-13 52.2 0.5 3.6e-13 50.5 0.5 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|386001846|ref|YP_005920145.1| - 9.9e-11 42.1 0.2 1.4e-10 41.6 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|386001846|ref|YP_005920145.1| - 0.046 13.1 0.0 11 5.3 0.0 2.4 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily SMC_N PF02463.19 gi|386001847|ref|YP_005920146.1| - 6.2e-20 71.6 0.0 1.1e-19 70.8 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|386001847|ref|YP_005920146.1| - 3.3e-17 63.7 26.1 1.2e-16 61.9 16.9 4.3 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|386001847|ref|YP_005920146.1| - 9e-11 42.1 0.0 5.7e-10 39.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|386001847|ref|YP_005920146.1| - 1.7e-07 30.9 0.0 3e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|386001847|ref|YP_005920146.1| - 3.6e-06 26.7 0.1 3.6e-06 26.7 0.1 4.2 4 1 1 5 5 5 1 AAA domain SbcCD_C PF13558.6 gi|386001847|ref|YP_005920146.1| - 4e-06 27.0 0.0 1.2e-05 25.5 0.0 1.9 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.27 gi|386001847|ref|YP_005920146.1| - 0.00017 22.1 0.2 0.0014 19.2 0.0 2.7 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|386001847|ref|YP_005920146.1| - 0.00025 21.0 0.1 0.001 19.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Siah-Interact_N PF09032.11 gi|386001847|ref|YP_005920146.1| - 0.11 12.8 6.2 0.79 10.1 0.8 3.7 2 0 0 2 2 2 0 Siah interacting protein, N terminal AAA_5 PF07728.14 gi|386001847|ref|YP_005920146.1| - 0.14 12.2 2.0 0.33 10.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) HALZ PF02183.18 gi|386001847|ref|YP_005920146.1| - 3.6 7.9 6.1 21 5.4 0.3 4.5 5 0 0 5 5 5 0 Homeobox associated leucine zipper FAD_binding_3 PF01494.19 gi|386001848|ref|YP_005920147.1| - 4.1e-11 42.7 4.0 1.3e-09 37.8 0.7 2.9 2 1 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|386001848|ref|YP_005920147.1| - 7.4e-09 35.6 8.0 0.00038 20.2 0.3 3.0 2 1 1 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|386001848|ref|YP_005920147.1| - 1e-08 34.4 0.5 3.6e-08 32.5 0.6 1.7 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|386001848|ref|YP_005920147.1| - 1.9e-08 33.9 0.2 3.1e-08 33.2 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|386001848|ref|YP_005920147.1| - 5.4e-07 28.8 0.9 0.0022 16.9 0.0 2.8 2 1 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|386001848|ref|YP_005920147.1| - 8.2e-07 28.4 7.5 0.0074 15.4 0.0 2.9 2 1 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|386001848|ref|YP_005920147.1| - 9.1e-07 28.6 5.4 1.4e-06 27.9 5.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|386001848|ref|YP_005920147.1| - 1e-05 25.7 0.5 1e-05 25.7 0.5 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|386001848|ref|YP_005920147.1| - 1.6e-05 24.2 1.2 2e-05 23.9 1.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|386001848|ref|YP_005920147.1| - 4.5e-05 22.7 8.0 7.4e-05 22.0 2.8 2.3 1 1 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|386001848|ref|YP_005920147.1| - 0.00099 18.4 0.2 0.0032 16.8 0.1 1.8 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|386001848|ref|YP_005920147.1| - 0.0011 18.3 0.7 0.0019 17.6 0.7 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|386001848|ref|YP_005920147.1| - 0.015 15.9 0.4 0.041 14.5 0.1 1.9 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|386001848|ref|YP_005920147.1| - 0.03 14.2 0.3 0.051 13.4 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|386001848|ref|YP_005920147.1| - 0.059 12.6 0.3 0.089 12.0 0.3 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase zf-tcix PF14952.6 gi|386001848|ref|YP_005920147.1| - 0.095 12.3 0.2 0.19 11.4 0.2 1.4 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding NAD_binding_9 PF13454.6 gi|386001848|ref|YP_005920147.1| - 0.16 12.0 0.5 0.84 9.6 0.1 2.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding OCD_Mu_crystall PF02423.15 gi|386001849|ref|YP_005920148.1| - 1.3e-107 359.5 0.9 1.4e-107 359.3 0.9 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|386001849|ref|YP_005920148.1| - 5.2e-05 23.3 0.0 8e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DUF1638 PF07796.11 gi|386001850|ref|YP_005920149.1| - 2.1e-29 102.7 0.0 4.7e-29 101.5 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1638) Thioredoxin PF00085.20 gi|386001851|ref|YP_005920150.1| - 2.5e-26 91.7 0.0 3.1e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|386001851|ref|YP_005920150.1| - 5e-07 30.1 0.4 1.3e-05 25.6 0.4 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|386001851|ref|YP_005920150.1| - 1.4e-05 25.3 0.1 0.019 15.3 0.0 2.5 2 1 1 3 3 3 2 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|386001851|ref|YP_005920150.1| - 0.00066 19.4 0.0 0.00084 19.1 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|386001851|ref|YP_005920150.1| - 0.00088 18.7 0.0 0.0011 18.5 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_3 PF13192.6 gi|386001851|ref|YP_005920150.1| - 0.0036 17.3 0.1 0.0084 16.1 0.1 1.7 1 1 1 2 2 2 1 Thioredoxin domain Phosducin PF02114.16 gi|386001851|ref|YP_005920150.1| - 0.0096 14.9 0.0 0.013 14.5 0.0 1.3 1 1 0 1 1 1 1 Phosducin AhpC-TSA PF00578.21 gi|386001851|ref|YP_005920150.1| - 0.011 15.7 0.1 1.3 9.0 0.0 2.4 1 1 1 2 2 2 0 AhpC/TSA family DUF953 PF06110.11 gi|386001851|ref|YP_005920150.1| - 0.014 15.0 0.1 0.1 12.2 0.1 2.0 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Thioredoxin_7 PF13899.6 gi|386001851|ref|YP_005920150.1| - 0.067 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like HyaE PF07449.11 gi|386001851|ref|YP_005920150.1| - 0.075 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Redoxin PF08534.10 gi|386001851|ref|YP_005920150.1| - 0.12 12.0 0.2 1.7 8.3 0.2 2.1 1 1 1 2 2 2 0 Redoxin DUF4277 PF14104.6 gi|386001852|ref|YP_005920151.1| - 0.049 14.0 0.0 52 4.3 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4277) Pribosyltran PF00156.27 gi|386001853|ref|YP_005920152.1| - 3.8e-19 68.8 0.5 5.1e-19 68.3 0.5 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|386001853|ref|YP_005920152.1| - 0.0024 17.4 0.1 0.0045 16.4 0.0 1.3 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|386001853|ref|YP_005920152.1| - 0.0034 16.9 0.3 0.039 13.5 0.3 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase GerE PF00196.19 gi|386001853|ref|YP_005920152.1| - 0.013 15.1 0.0 0.031 13.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_7 PF02796.15 gi|386001853|ref|YP_005920152.1| - 0.015 15.3 0.0 0.043 13.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|386001853|ref|YP_005920152.1| - 0.032 14.0 0.0 0.16 11.8 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_11 PF08279.12 gi|386001853|ref|YP_005920152.1| - 0.049 13.6 0.1 0.19 11.7 0.1 2.1 2 0 0 2 2 2 0 HTH domain Fe_dep_repress PF01325.19 gi|386001853|ref|YP_005920152.1| - 0.057 13.6 0.0 3.7 7.8 0.0 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|386001853|ref|YP_005920152.1| - 0.061 12.9 0.2 0.27 10.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 YflT PF11181.8 gi|386001853|ref|YP_005920152.1| - 0.063 13.8 0.5 1.7 9.2 0.1 2.3 2 0 0 2 2 2 0 Heat induced stress protein YflT PIN_6 PF17146.4 gi|386001854|ref|YP_005920153.1| - 5.7e-15 55.6 0.1 9.2e-15 54.9 0.1 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|386001854|ref|YP_005920153.1| - 0.003 17.0 0.3 0.0054 16.2 0.2 1.5 2 0 0 2 2 2 1 PINc domain ribonuclease HypA PF01155.19 gi|386001854|ref|YP_005920153.1| - 0.0062 16.5 0.0 0.0094 16.0 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_ligase_ZBD PF03119.16 gi|386001854|ref|YP_005920153.1| - 0.018 15.1 7.6 0.086 12.9 0.8 2.4 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|386001854|ref|YP_005920153.1| - 0.023 14.7 3.1 0.037 14.0 3.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon GcrA PF07750.11 gi|386001854|ref|YP_005920153.1| - 0.046 14.1 0.1 0.06 13.8 0.1 1.1 1 0 0 1 1 1 0 GcrA cell cycle regulator Prok-RING_1 PF14446.6 gi|386001854|ref|YP_005920153.1| - 0.19 11.7 5.4 0.28 11.1 5.4 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Auto_anti-p27 PF06677.12 gi|386001854|ref|YP_005920153.1| - 0.39 10.9 0.3 0.39 10.9 0.3 2.2 1 1 2 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) ProRS-C_1 PF09180.11 gi|386001854|ref|YP_005920153.1| - 0.93 9.8 2.7 4.1 7.7 2.8 1.9 1 1 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal RecR PF02132.15 gi|386001854|ref|YP_005920153.1| - 1 9.0 5.0 0.23 11.1 1.2 1.9 2 0 0 2 2 2 0 RecR protein Rad50_zn_hook PF04423.14 gi|386001854|ref|YP_005920153.1| - 1.2 9.0 10.4 0.71 9.8 1.9 2.5 1 1 1 2 2 2 0 Rad50 zinc hook motif Ogr_Delta PF04606.12 gi|386001854|ref|YP_005920153.1| - 1.3 9.0 5.8 1.3 9.1 0.4 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn-ribbon_8 PF09723.10 gi|386001854|ref|YP_005920153.1| - 1.9 8.7 9.2 7.8 6.7 1.4 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 gi|386001854|ref|YP_005920153.1| - 2.6 7.8 10.3 2.4 7.9 2.4 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|386001854|ref|YP_005920153.1| - 3.8 7.0 9.3 1.3 8.5 0.6 2.3 1 1 1 2 2 2 0 zinc-ribbon domain ABC_tran PF00005.27 gi|386001856|ref|YP_005920155.1| - 2e-35 122.3 0.0 4.7e-19 69.3 0.0 2.5 2 0 0 2 2 2 2 ABC transporter RLI PF04068.15 gi|386001856|ref|YP_005920155.1| - 3e-11 43.0 2.7 6.9e-11 41.8 2.7 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|386001856|ref|YP_005920155.1| - 5.4e-10 39.1 3.1 0.00041 19.8 0.3 3.8 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|386001856|ref|YP_005920155.1| - 2e-09 37.7 7.7 0.012 15.4 0.0 4.0 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|386001856|ref|YP_005920155.1| - 7.4e-08 31.9 3.9 7.4e-08 31.9 3.9 2.5 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386001856|ref|YP_005920155.1| - 1.6e-07 31.1 13.3 2.4e-06 27.4 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_23 PF13476.6 gi|386001856|ref|YP_005920155.1| - 0.00012 22.6 0.1 0.26 11.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|386001856|ref|YP_005920155.1| - 0.00018 21.5 0.1 0.5 10.3 0.0 2.4 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_29 PF13555.6 gi|386001856|ref|YP_005920155.1| - 0.0005 19.8 0.5 0.27 11.0 0.2 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain Fer4_21 PF14697.6 gi|386001856|ref|YP_005920155.1| - 0.00064 19.8 6.1 0.0011 19.0 6.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386001856|ref|YP_005920155.1| - 0.0017 18.5 7.4 0.0032 17.6 7.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|386001856|ref|YP_005920155.1| - 0.0032 17.4 0.6 1.6 8.6 0.0 2.5 2 0 0 2 2 2 1 RsgA GTPase Fer4_7 PF12838.7 gi|386001856|ref|YP_005920155.1| - 0.0034 17.9 1.3 0.0034 17.9 1.3 2.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001856|ref|YP_005920155.1| - 0.0037 17.3 2.3 0.0037 17.3 2.3 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_16 PF13191.6 gi|386001856|ref|YP_005920155.1| - 0.004 17.6 1.6 0.44 10.9 0.1 2.6 2 2 0 2 2 2 1 AAA ATPase domain Fer4_10 PF13237.6 gi|386001856|ref|YP_005920155.1| - 0.006 16.7 1.4 0.006 16.7 1.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|386001856|ref|YP_005920155.1| - 0.0061 16.3 1.2 1.3 8.7 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|386001856|ref|YP_005920155.1| - 0.0066 16.2 0.2 4.7 6.8 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain SbcCD_C PF13558.6 gi|386001856|ref|YP_005920155.1| - 0.011 15.9 0.1 7.5 6.9 0.0 3.1 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|386001856|ref|YP_005920155.1| - 0.012 16.1 0.8 1.6 9.2 0.0 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|386001856|ref|YP_005920155.1| - 0.035 14.5 0.2 10 6.5 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_14 PF13173.6 gi|386001856|ref|YP_005920155.1| - 0.037 14.1 0.3 4 7.5 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|386001856|ref|YP_005920155.1| - 0.044 14.3 2.4 17 6.0 1.0 3.5 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|386001856|ref|YP_005920155.1| - 0.056 13.4 1.1 13 5.7 0.1 3.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Fer4_16 PF13484.6 gi|386001856|ref|YP_005920155.1| - 0.058 14.3 1.3 0.058 14.3 1.3 1.9 1 1 0 2 2 1 0 4Fe-4S double cluster binding domain SRP54 PF00448.22 gi|386001856|ref|YP_005920155.1| - 0.099 12.3 1.7 7.5 6.1 0.1 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|386001856|ref|YP_005920155.1| - 0.15 11.9 1.5 7.4 6.5 0.1 2.5 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|386001856|ref|YP_005920155.1| - 0.2 11.3 1.9 20 4.8 0.0 2.9 3 0 0 3 3 3 0 AAA domain Fer4_4 PF12800.7 gi|386001856|ref|YP_005920155.1| - 0.25 11.9 12.4 0.069 13.7 3.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain MukB PF04310.12 gi|386001856|ref|YP_005920155.1| - 0.33 10.7 0.7 2.7 7.8 0.1 2.2 2 0 0 2 2 2 0 MukB N-terminal NTPase_1 PF03266.15 gi|386001856|ref|YP_005920155.1| - 1.1 9.2 3.5 40 4.1 0.5 3.4 3 0 0 3 3 3 0 NTPase AAA_28 PF13521.6 gi|386001856|ref|YP_005920155.1| - 1.3 9.3 5.5 5.1 7.3 0.4 3.1 4 0 0 4 4 3 0 AAA domain Fer4_17 PF13534.6 gi|386001856|ref|YP_005920155.1| - 9.1 6.9 11.1 78 3.9 11.1 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain FKBP_C PF00254.28 gi|386001857|ref|YP_005920156.1| - 1.2e-27 96.0 0.0 2.2e-27 95.2 0.0 1.4 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP_C PF00254.28 gi|386001858|ref|YP_005920157.1| - 5.7e-26 90.7 0.0 8.3e-26 90.2 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF2187 PF09953.9 gi|386001858|ref|YP_005920157.1| - 0.0052 16.7 0.0 0.036 14.1 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2187) DUF2196 PF09962.9 gi|386001859|ref|YP_005920158.1| - 1e-32 111.9 2.1 1.3e-32 111.5 2.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) DUF262 PF03235.14 gi|386001860|ref|YP_005920159.1| - 2.9e-28 99.6 0.2 2e-27 96.8 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function DUF262 LacY_symp PF01306.19 gi|386001860|ref|YP_005920159.1| - 0.17 10.6 0.0 0.26 10.0 0.0 1.2 1 0 0 1 1 1 0 LacY proton/sugar symporter McrBC PF10117.9 gi|386001861|ref|YP_005920160.1| - 0.055 12.6 0.0 0.058 12.5 0.0 1.1 1 0 0 1 1 1 0 McrBC 5-methylcytosine restriction system component Acylphosphatase PF00708.18 gi|386001862|ref|YP_005920161.1| - 9.4e-12 45.2 0.0 1.6e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase DUF1664 PF07889.12 gi|386001862|ref|YP_005920161.1| - 0.001 19.1 1.8 0.0014 18.6 1.0 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) CheZ PF04344.13 gi|386001862|ref|YP_005920161.1| - 0.0093 15.9 0.7 0.011 15.7 0.7 1.2 1 0 0 1 1 1 1 Chemotaxis phosphatase, CheZ Aminotran_1_2 PF00155.21 gi|386001863|ref|YP_005920162.1| - 1.3e-36 126.5 0.0 1.6e-36 126.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|386001863|ref|YP_005920162.1| - 1.7e-05 23.8 0.0 1.9e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Pyrid_ox_like PF16242.5 gi|386001864|ref|YP_005920163.1| - 7e-12 45.2 0.0 9.4e-12 44.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Putative_PNPOx PF01243.20 gi|386001864|ref|YP_005920163.1| - 1.1e-11 44.8 0.0 2e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|386001864|ref|YP_005920163.1| - 7.2e-07 29.3 0.0 1e-06 28.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FMN_bind_2 PF04299.12 gi|386001864|ref|YP_005920163.1| - 0.028 14.1 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 Putative FMN-binding domain Pyridox_oxase_2 PF12766.7 gi|386001864|ref|YP_005920163.1| - 0.034 14.8 0.0 0.063 13.9 0.0 1.5 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase HTH_20 PF12840.7 gi|386001865|ref|YP_005920164.1| - 0.00052 20.0 0.0 0.00083 19.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain LIM PF00412.22 gi|386001865|ref|YP_005920164.1| - 0.00078 19.6 3.1 0.0014 18.8 3.1 1.4 1 0 0 1 1 1 1 LIM domain TrmB PF01978.19 gi|386001865|ref|YP_005920164.1| - 0.0089 15.9 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|386001865|ref|YP_005920164.1| - 0.031 14.0 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|386001865|ref|YP_005920164.1| - 0.049 13.5 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.16 gi|386001865|ref|YP_005920164.1| - 0.059 13.1 0.0 0.14 12.0 0.0 1.6 1 1 0 1 1 1 0 LexA DNA binding domain HTH_AsnC-type PF13404.6 gi|386001865|ref|YP_005920164.1| - 0.059 13.2 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|386001865|ref|YP_005920164.1| - 0.07 12.7 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2802 PF10975.8 gi|386001865|ref|YP_005920164.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) CMD PF02627.20 gi|386001866|ref|YP_005920165.1| - 1.7e-14 53.7 0.7 1.9e-14 53.5 0.7 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family HypA PF01155.19 gi|386001867|ref|YP_005920166.1| - 0.0053 16.8 0.5 0.011 15.8 0.5 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2293 PF10056.9 gi|386001867|ref|YP_005920166.1| - 0.018 15.3 0.0 0.029 14.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2293) Zn-ribbon_8 PF09723.10 gi|386001867|ref|YP_005920166.1| - 0.034 14.2 2.4 0.085 13.0 2.4 1.6 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|386001867|ref|YP_005920166.1| - 0.058 13.3 4.2 1.4 8.9 0.3 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|386001867|ref|YP_005920166.1| - 0.2 11.5 4.3 0.97 9.2 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Rpr2 PF04032.16 gi|386001868|ref|YP_005920167.1| - 8.2e-11 42.0 1.0 1.4e-10 41.3 1.0 1.4 1 1 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Ham1p_like PF01725.16 gi|386001870|ref|YP_005920169.1| - 1.1e-48 165.6 0.0 1.2e-48 165.5 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Shugoshin_C PF07557.11 gi|386001870|ref|YP_005920169.1| - 0.088 12.6 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 Shugoshin C terminus DUF1678 PF07913.11 gi|386001870|ref|YP_005920169.1| - 0.17 11.6 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1678) DUF11 PF01345.18 gi|386001871|ref|YP_005920170.1| - 1.8e-10 41.0 4.0 2.5e-06 27.7 3.0 3.1 2 1 0 2 2 2 2 Domain of unknown function DUF11 CARDB PF07705.11 gi|386001871|ref|YP_005920170.1| - 5.3e-06 26.6 0.2 0.00029 21.1 0.0 3.0 3 1 0 3 3 3 1 CARDB N_BRCA1_IG PF16158.5 gi|386001871|ref|YP_005920170.1| - 0.11 13.3 0.0 1.5 9.6 0.0 2.4 1 1 0 1 1 1 0 Ig-like domain from next to BRCA1 gene NPCBM_assoc PF10633.9 gi|386001871|ref|YP_005920170.1| - 0.12 12.6 6.0 0.65 10.3 0.6 4.0 4 1 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Asparaginase PF00710.20 gi|386001872|ref|YP_005920171.1| - 3.3e-61 206.2 1.0 1.1e-60 204.5 0.8 1.8 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|386001872|ref|YP_005920171.1| - 4e-30 104.4 0.3 1.9e-29 102.2 0.0 2.1 2 1 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|386001872|ref|YP_005920171.1| - 4.1e-13 48.4 0.0 8.6e-13 47.4 0.0 1.6 1 0 0 1 1 1 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|386001872|ref|YP_005920171.1| - 0.017 14.7 0.0 1.6 8.2 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein domain Ribosomal_L16 PF00252.18 gi|386001873|ref|YP_005920172.1| - 8.4e-32 110.0 0.1 9.4e-32 109.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e SpmSyn_N PF17950.1 gi|386001873|ref|YP_005920172.1| - 0.12 12.5 0.0 0.19 12.0 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine decarboxylase N -terminal eIF-5_eIF-2B PF01873.17 gi|386001874|ref|YP_005920173.1| - 1.9e-39 134.1 0.0 2.7e-39 133.6 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|386001874|ref|YP_005920173.1| - 5.1e-12 45.6 0.4 1.3e-11 44.3 0.3 1.7 2 0 0 2 2 2 1 TRAM domain DUF4265 PF14085.6 gi|386001874|ref|YP_005920173.1| - 0.00082 19.3 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4265) Cytochrom_c3_2 PF14537.6 gi|386001874|ref|YP_005920173.1| - 0.096 13.2 0.1 0.14 12.6 0.1 1.2 1 0 0 1 1 1 0 Cytochrome c3 ZF-HD_dimer PF04770.12 gi|386001874|ref|YP_005920173.1| - 0.41 11.0 3.1 1.2 9.5 3.2 1.8 1 1 0 1 1 1 0 ZF-HD protein dimerisation region zf-RanBP PF00641.18 gi|386001874|ref|YP_005920173.1| - 0.43 9.9 0.1 0.43 9.9 0.1 1.6 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others F420_ligase PF01996.16 gi|386001876|ref|YP_005920175.1| - 1.3e-59 201.5 0.0 1.6e-59 201.2 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Sigma70_r3 PF04539.16 gi|386001876|ref|YP_005920175.1| - 0.02 15.0 0.1 0.047 13.8 0.1 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 GGDEF_2 PF17853.1 gi|386001876|ref|YP_005920175.1| - 0.19 12.0 1.5 1 9.6 1.5 2.2 1 1 0 1 1 1 0 GGDEF-like domain CofC PF01983.16 gi|386001877|ref|YP_005920176.1| - 5.9e-49 166.2 0.0 7.9e-49 165.8 0.0 1.1 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|386001877|ref|YP_005920176.1| - 0.00053 20.4 0.0 0.00073 19.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain ACT PF01842.25 gi|386001878|ref|YP_005920177.1| - 0.0033 17.2 0.0 0.0079 15.9 0.0 1.7 1 0 0 1 1 1 1 ACT domain HTH_29 PF13551.6 gi|386001878|ref|YP_005920177.1| - 0.013 15.5 0.0 0.047 13.7 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix AAA PF00004.29 gi|386001879|ref|YP_005920178.1| - 8.6e-37 126.5 0.0 1.5e-36 125.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 gi|386001879|ref|YP_005920178.1| - 1.6e-09 38.1 0.0 3e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|386001879|ref|YP_005920178.1| - 1.1e-07 31.4 0.1 2.5e-07 30.2 0.0 1.5 2 0 0 2 2 2 1 TIP49 P-loop domain RuvB_N PF05496.12 gi|386001879|ref|YP_005920178.1| - 2.1e-05 24.4 0.0 0.00013 21.8 0.0 2.3 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_3 PF17862.1 gi|386001879|ref|YP_005920178.1| - 7.5e-05 22.5 0.2 0.00016 21.4 0.2 1.6 1 0 0 1 1 1 1 AAA+ lid domain Mg_chelatase PF01078.21 gi|386001879|ref|YP_005920178.1| - 7.5e-05 22.2 0.0 0.00033 20.1 0.0 2.1 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|386001879|ref|YP_005920178.1| - 0.00026 20.2 0.0 0.0009 18.5 0.0 1.9 1 1 2 3 3 3 1 Protein of unknown function (DUF815) AAA_16 PF13191.6 gi|386001879|ref|YP_005920178.1| - 0.00027 21.4 0.3 0.0071 16.7 0.2 2.6 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|386001879|ref|YP_005920178.1| - 0.00034 20.4 0.0 0.00056 19.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|386001879|ref|YP_005920178.1| - 0.00078 19.3 0.2 0.0037 17.1 0.1 2.2 1 1 1 2 2 2 1 Bacterial dnaA protein AAA_5 PF07728.14 gi|386001879|ref|YP_005920178.1| - 0.00092 19.2 0.1 0.0043 17.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|386001879|ref|YP_005920178.1| - 0.00093 19.5 0.4 0.028 14.7 0.0 2.4 1 1 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|386001879|ref|YP_005920178.1| - 0.0017 17.9 0.0 0.02 14.4 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_33 PF13671.6 gi|386001879|ref|YP_005920178.1| - 0.0036 17.5 0.0 0.0071 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|386001879|ref|YP_005920178.1| - 0.0045 16.7 0.0 0.049 13.3 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_28 PF13521.6 gi|386001879|ref|YP_005920178.1| - 0.0049 17.1 0.0 0.021 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|386001879|ref|YP_005920178.1| - 0.0071 16.1 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|386001879|ref|YP_005920178.1| - 0.0098 16.4 0.0 0.022 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|386001879|ref|YP_005920178.1| - 0.016 15.6 0.0 0.034 14.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase IPT PF01745.16 gi|386001879|ref|YP_005920178.1| - 0.04 13.3 0.0 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase TsaE PF02367.17 gi|386001879|ref|YP_005920178.1| - 0.052 13.5 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Guanylate_kin PF00625.21 gi|386001879|ref|YP_005920178.1| - 0.06 13.0 0.2 1.8 8.2 0.0 2.8 3 0 0 3 3 3 0 Guanylate kinase TniB PF05621.11 gi|386001879|ref|YP_005920178.1| - 0.075 12.4 0.1 0.36 10.2 0.0 2.0 2 1 0 2 2 2 0 Bacterial TniB protein Parvo_NS1 PF01057.17 gi|386001879|ref|YP_005920178.1| - 0.092 11.8 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 gi|386001879|ref|YP_005920178.1| - 0.14 12.6 0.0 0.38 11.3 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Rad17 PF03215.15 gi|386001879|ref|YP_005920178.1| - 0.16 11.9 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain ASCH PF04266.14 gi|386001881|ref|YP_005920180.1| - 0.085 13.4 0.0 0.12 13.0 0.0 1.2 1 0 0 1 1 1 0 ASCH domain DUF4352 PF11611.8 gi|386001883|ref|YP_005920182.1| - 7.7e-15 55.3 0.0 9.1e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) DUF5067 PF16729.5 gi|386001883|ref|YP_005920182.1| - 0.007 16.3 0.1 0.0089 15.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5067) DUF2606 PF10794.9 gi|386001884|ref|YP_005920183.1| - 0.16 11.7 0.0 0.34 10.7 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2606) Phage_integrase PF00589.22 gi|386001886|ref|YP_005920185.1| - 2.1e-25 89.5 0.0 3.2e-25 88.9 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|386001886|ref|YP_005920185.1| - 0.0046 17.4 1.5 0.0068 16.9 0.1 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain UPF0175 PF03683.13 gi|386001887|ref|YP_005920186.1| - 2.4e-17 62.4 0.3 2.7e-17 62.2 0.3 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HicB_lk_antitox PF15919.5 gi|386001888|ref|YP_005920187.1| - 3.4e-09 36.9 0.0 4e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF3417 PF11897.8 gi|386001889|ref|YP_005920188.1| - 1.7e-30 105.7 0.2 1.6e-29 102.6 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.20 gi|386001889|ref|YP_005920188.1| - 3e-24 85.3 0.0 4e-18 65.1 0.0 3.8 3 1 0 3 3 3 2 Carbohydrate phosphorylase Peptidase_C14 PF00656.22 gi|386001889|ref|YP_005920188.1| - 8e-18 65.3 0.1 1.3e-17 64.6 0.1 1.3 1 0 0 1 1 1 1 Caspase domain Peptidase_C25 PF01364.18 gi|386001889|ref|YP_005920188.1| - 0.00071 18.9 0.0 0.0015 17.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase family C25 Peptidase_C13 PF01650.18 gi|386001889|ref|YP_005920188.1| - 0.004 16.7 0.4 0.013 15.1 0.4 1.8 1 1 0 1 1 1 1 Peptidase C13 family Raptor_N PF14538.6 gi|386001889|ref|YP_005920188.1| - 0.13 12.2 0.0 0.39 10.7 0.0 1.8 1 0 0 1 1 1 0 Raptor N-terminal CASPase like domain Myc_N PF01056.18 gi|386001889|ref|YP_005920188.1| - 0.16 11.8 0.0 0.26 11.2 0.0 1.2 1 0 0 1 1 1 0 Myc amino-terminal region tRNA-synt_1b PF00579.25 gi|386001890|ref|YP_005920189.1| - 2.9e-56 191.0 0.0 3.3e-56 190.8 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|386001890|ref|YP_005920189.1| - 0.00015 20.8 0.0 0.015 14.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) UbiA PF01040.18 gi|386001892|ref|YP_005920191.1| - 0.004 16.5 3.9 0.0041 16.5 3.9 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1189 PF06691.11 gi|386001892|ref|YP_005920191.1| - 0.16 11.5 3.5 0.19 11.3 3.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) PhoR PF11808.8 gi|386001892|ref|YP_005920191.1| - 0.35 11.3 7.6 0.38 11.2 7.6 1.1 1 0 0 1 1 1 0 Phosphate regulon sensor protein PhoR DUF2207 PF09972.9 gi|386001892|ref|YP_005920191.1| - 0.37 9.5 2.8 0.36 9.6 2.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) NTP_transf_3 PF12804.7 gi|386001893|ref|YP_005920192.1| - 4e-28 98.8 4.2 6e-28 98.2 4.2 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|386001893|ref|YP_005920192.1| - 0.0072 16.1 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF2121 PF09894.9 gi|386001894|ref|YP_005920193.1| - 2.5e-63 213.2 0.0 2.9e-63 213.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) eIF-1a PF01176.19 gi|386001894|ref|YP_005920193.1| - 0.075 12.8 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 THF_DHG_CYH_C PF02882.19 gi|386001895|ref|YP_005920194.1| - 3.5e-62 208.4 3.3 4.6e-62 208.1 3.3 1.1 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|386001895|ref|YP_005920194.1| - 9.4e-34 116.2 0.0 1.4e-33 115.6 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SHMT PF00464.19 gi|386001896|ref|YP_005920195.1| - 1.2e-171 570.8 0.1 1.4e-171 570.5 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|386001896|ref|YP_005920195.1| - 0.00022 20.6 0.1 0.0017 17.7 0.1 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|386001896|ref|YP_005920195.1| - 0.00068 18.9 0.0 0.0011 18.2 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II TGT_C2 PF14810.6 gi|386001897|ref|YP_005920196.1| - 1.1e-26 92.7 0.1 4.3e-26 90.8 0.1 1.8 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|386001897|ref|YP_005920196.1| - 1.2e-15 57.2 0.8 2.2e-15 56.3 0.8 1.4 1 0 0 1 1 1 1 PUA domain PUA_3 PF17785.1 gi|386001897|ref|YP_005920196.1| - 0.0058 16.4 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 PUA-like domain UPF0113 PF03657.13 gi|386001897|ref|YP_005920196.1| - 0.024 14.9 0.0 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 UPF0113 PUA domain DUF2944 PF11161.8 gi|386001897|ref|YP_005920196.1| - 0.078 12.9 0.0 0.16 11.9 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2946) Tex_YqgF PF16921.5 gi|386001897|ref|YP_005920196.1| - 0.1 13.1 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Tex protein YqgF-like domain NUMOD4 PF07463.11 gi|386001897|ref|YP_005920196.1| - 0.18 12.0 0.0 0.31 11.3 0.0 1.4 1 0 0 1 1 1 0 NUMOD4 motif Aminotran_5 PF00266.19 gi|386001898|ref|YP_005920197.1| - 1.1e-83 281.3 0.0 1.2e-83 281.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|386001898|ref|YP_005920197.1| - 2.3e-09 37.0 0.0 3e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|386001898|ref|YP_005920197.1| - 0.0036 16.7 0.2 0.0058 16.0 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SMC_N PF02463.19 gi|386001899|ref|YP_005920198.1| - 9.7e-08 31.7 4.8 6.4e-07 29.0 4.8 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|386001899|ref|YP_005920198.1| - 0.0013 18.6 20.7 0.0013 18.6 20.7 3.7 2 1 1 3 3 3 1 AAA ATPase domain AAA_16 PF13191.6 gi|386001899|ref|YP_005920198.1| - 0.027 14.9 0.0 0.18 12.2 0.0 2.3 2 1 0 2 2 2 0 AAA ATPase domain Phos_pyr_kin PF08543.12 gi|386001899|ref|YP_005920198.1| - 0.083 12.2 0.2 0.15 11.4 0.2 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase HNOBA PF07701.14 gi|386001899|ref|YP_005920198.1| - 0.14 11.6 7.5 1.4 8.3 0.1 3.3 2 1 1 3 3 3 0 Heme NO binding associated DUF2811 PF10929.8 gi|386001899|ref|YP_005920198.1| - 0.18 12.1 0.7 24 5.3 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2811) AAA_21 PF13304.6 gi|386001899|ref|YP_005920198.1| - 0.42 10.4 22.1 0.56 10.0 13.5 4.0 3 1 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system ApoLp-III PF07464.11 gi|386001899|ref|YP_005920198.1| - 0.49 10.5 15.4 1.3 9.1 2.5 4.1 4 0 0 4 4 4 0 Apolipophorin-III precursor (apoLp-III) ABC_tran PF00005.27 gi|386001899|ref|YP_005920198.1| - 1.6 9.3 9.1 23 5.5 7.8 3.5 2 1 0 2 2 2 0 ABC transporter Wtap PF17098.5 gi|386001899|ref|YP_005920198.1| - 1.8 8.5 13.4 15 5.5 11.6 3.0 1 1 1 2 2 2 0 WTAP/Mum2p family DUF4407 PF14362.6 gi|386001899|ref|YP_005920198.1| - 1.9 7.7 8.7 14 4.9 7.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF5082 PF16888.5 gi|386001899|ref|YP_005920198.1| - 2.3 8.5 23.3 5.4 7.3 0.7 4.7 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) Baculo_PEP_C PF04513.12 gi|386001899|ref|YP_005920198.1| - 5.3 7.1 6.8 2.4 8.2 1.5 3.1 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus YqhR PF11085.8 gi|386001900|ref|YP_005920199.1| - 0.21 11.5 4.1 0.25 11.3 4.1 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR DUF2178 PF09946.9 gi|386001900|ref|YP_005920199.1| - 0.32 11.2 6.3 0.27 11.4 5.3 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2178) Tetraspanin PF00335.20 gi|386001900|ref|YP_005920199.1| - 9.7 5.8 12.5 0.27 10.9 0.7 2.2 2 1 0 2 2 2 0 Tetraspanin family Peripla_BP_2 PF01497.18 gi|386001901|ref|YP_005920200.1| - 3.3e-36 125.0 0.0 6e-36 124.2 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein SHOCT PF09851.9 gi|386001901|ref|YP_005920200.1| - 0.2 11.4 2.4 0.39 10.5 2.4 1.5 1 0 0 1 1 1 0 Short C-terminal domain Methyltransf_25 PF13649.6 gi|386001902|ref|YP_005920201.1| - 3.4e-13 50.1 0.1 5.6e-13 49.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386001902|ref|YP_005920201.1| - 9.4e-11 41.7 0.0 1.1e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386001902|ref|YP_005920201.1| - 8.9e-10 39.1 0.0 1.4e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386001902|ref|YP_005920201.1| - 3.9e-08 33.9 0.0 9.1e-08 32.8 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|386001902|ref|YP_005920201.1| - 1.8e-07 30.5 0.0 2.4e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|386001902|ref|YP_005920201.1| - 1.7e-06 27.7 0.0 2.7e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain GidB PF02527.15 gi|386001902|ref|YP_005920201.1| - 3.4e-06 26.5 0.0 4.9e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_23 PF13489.6 gi|386001902|ref|YP_005920201.1| - 4.4e-06 26.6 0.0 6.1e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|386001902|ref|YP_005920201.1| - 6e-06 26.1 0.0 8.6e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein PCMT PF01135.19 gi|386001902|ref|YP_005920201.1| - 5.7e-05 23.0 0.0 8.5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|386001902|ref|YP_005920201.1| - 9.4e-05 21.9 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|386001902|ref|YP_005920201.1| - 0.00013 21.4 0.0 0.00018 21.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 gi|386001902|ref|YP_005920201.1| - 0.00022 20.7 0.0 0.00042 19.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|386001902|ref|YP_005920201.1| - 0.00092 18.6 0.0 0.0013 18.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|386001902|ref|YP_005920201.1| - 0.0013 18.7 0.1 0.0025 17.8 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain DREV PF05219.12 gi|386001902|ref|YP_005920201.1| - 0.0039 16.3 0.0 0.0057 15.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Cons_hypoth95 PF03602.15 gi|386001902|ref|YP_005920201.1| - 0.01 15.5 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_16 PF10294.9 gi|386001902|ref|YP_005920201.1| - 0.01 15.6 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_4 PF02390.17 gi|386001902|ref|YP_005920201.1| - 0.025 14.0 0.0 0.043 13.3 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltr_RsmB-F PF01189.17 gi|386001902|ref|YP_005920201.1| - 0.096 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_32 PF13679.6 gi|386001902|ref|YP_005920201.1| - 0.19 11.7 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Band_7 PF01145.25 gi|386001903|ref|YP_005920202.1| - 1.9e-37 129.0 2.8 2.4e-37 128.6 2.8 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|386001903|ref|YP_005920202.1| - 0.0033 17.2 0.2 0.011 15.4 0.1 1.8 1 1 0 2 2 2 1 SPFH domain-Band 7 family FecCD PF01032.18 gi|386001904|ref|YP_005920203.1| - 2.9e-90 302.5 33.6 3.6e-90 302.2 33.6 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|386001904|ref|YP_005920203.1| - 0.00012 21.7 22.0 0.00012 21.7 22.0 1.5 2 0 0 2 2 2 1 ABC 3 transport family ABC_tran PF00005.27 gi|386001905|ref|YP_005920204.1| - 1e-33 116.8 0.0 1.5e-33 116.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001905|ref|YP_005920204.1| - 1.9e-09 37.8 0.0 1.3e-06 28.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|386001905|ref|YP_005920204.1| - 4.9e-07 29.4 0.1 2.8e-05 23.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|386001905|ref|YP_005920204.1| - 1.3e-05 25.8 0.0 2e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|386001905|ref|YP_005920204.1| - 1.4e-05 24.7 0.1 4.6e-05 23.1 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|386001905|ref|YP_005920204.1| - 3.1e-05 23.9 0.0 4.4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|386001905|ref|YP_005920204.1| - 0.00038 20.9 0.0 0.0006 20.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|386001905|ref|YP_005920204.1| - 0.0013 17.6 0.1 0.81 8.4 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class NB-ARC PF00931.22 gi|386001905|ref|YP_005920204.1| - 0.0014 17.9 2.1 0.017 14.3 2.1 2.0 1 1 0 1 1 1 1 NB-ARC domain AAA_30 PF13604.6 gi|386001905|ref|YP_005920204.1| - 0.0024 17.6 0.0 0.0042 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain RNA12 PF10443.9 gi|386001905|ref|YP_005920204.1| - 0.003 16.4 0.1 0.0079 15.0 0.0 1.6 2 0 0 2 2 2 1 RNA12 protein Mg_chelatase PF01078.21 gi|386001905|ref|YP_005920204.1| - 0.011 15.1 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_27 PF13514.6 gi|386001905|ref|YP_005920204.1| - 0.022 14.4 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|386001905|ref|YP_005920204.1| - 0.027 14.7 0.2 0.17 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|386001905|ref|YP_005920204.1| - 0.033 14.4 0.0 0.13 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|386001905|ref|YP_005920204.1| - 0.034 14.1 0.1 0.19 11.6 0.0 2.0 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|386001905|ref|YP_005920204.1| - 0.043 13.1 0.0 0.068 12.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Rad17 PF03215.15 gi|386001905|ref|YP_005920204.1| - 0.044 13.7 0.1 0.091 12.7 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|386001905|ref|YP_005920204.1| - 0.069 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|386001905|ref|YP_005920204.1| - 0.088 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|386001905|ref|YP_005920204.1| - 0.1 11.5 0.0 0.24 10.3 0.0 1.5 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_19 PF13245.6 gi|386001905|ref|YP_005920204.1| - 0.11 12.8 0.0 0.22 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|386001905|ref|YP_005920204.1| - 0.15 12.0 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|386001906|ref|YP_005920205.1| - 8.8e-28 97.5 0.0 1.2e-27 97.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386001906|ref|YP_005920205.1| - 3.6e-11 43.4 0.7 2.7e-05 24.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|386001906|ref|YP_005920205.1| - 2.4e-05 24.9 0.0 3.4e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|386001906|ref|YP_005920205.1| - 4.3e-05 22.4 0.0 0.035 12.8 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|386001906|ref|YP_005920205.1| - 0.00061 19.5 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|386001906|ref|YP_005920205.1| - 0.0095 15.7 0.0 4.3 6.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain Rad17 PF03215.15 gi|386001906|ref|YP_005920205.1| - 0.014 15.3 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|386001906|ref|YP_005920205.1| - 0.027 14.9 0.1 0.17 12.3 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|386001906|ref|YP_005920205.1| - 0.084 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|386001906|ref|YP_005920205.1| - 0.17 11.6 0.0 0.35 10.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|386001906|ref|YP_005920205.1| - 0.21 11.2 0.2 0.34 10.5 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|386001906|ref|YP_005920205.1| - 0.23 11.9 0.0 0.46 10.9 0.0 1.7 1 1 0 1 1 1 0 RNA helicase ABC2_membrane PF01061.24 gi|386001907|ref|YP_005920206.1| - 9.9e-18 64.3 27.1 1.6e-17 63.6 27.1 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|386001907|ref|YP_005920206.1| - 1.5e-09 37.5 26.8 1.5e-09 37.5 26.8 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein HEAT_2 PF13646.6 gi|386001908|ref|YP_005920207.1| - 2.8e-22 78.9 10.1 5.9e-11 42.6 0.7 3.4 2 1 2 4 4 4 3 HEAT repeats HEAT PF02985.22 gi|386001908|ref|YP_005920207.1| - 7.8e-10 38.2 1.7 0.47 10.9 0.0 4.9 4 0 0 4 4 4 3 HEAT repeat Cnd1 PF12717.7 gi|386001908|ref|YP_005920207.1| - 0.00022 21.3 1.8 1 9.4 0.0 4.7 4 1 2 6 6 6 2 non-SMC mitotic condensation complex subunit 1 ArnB_C PF18677.1 gi|386001908|ref|YP_005920207.1| - 0.013 15.6 0.6 0.045 13.9 0.6 1.9 1 0 0 1 1 1 0 Archaellum regulatory network B, C-terminal domain DUF2935 PF11155.8 gi|386001908|ref|YP_005920207.1| - 0.041 14.2 7.0 0.39 11.0 0.3 3.5 2 1 0 2 2 2 0 Domain of unknown function (DUF2935) Rnk_N PF14760.6 gi|386001908|ref|YP_005920207.1| - 0.064 13.7 0.3 36 5.0 0.0 3.6 2 0 0 2 2 2 0 Rnk N-terminus FtsA PF14450.6 gi|386001908|ref|YP_005920207.1| - 0.084 13.3 0.2 0.74 10.3 0.0 2.6 2 2 0 2 2 2 0 Cell division protein FtsA HEAT_EZ PF13513.6 gi|386001908|ref|YP_005920207.1| - 0.29 11.7 4.0 7.8 7.1 0.5 3.9 2 2 2 4 4 4 0 HEAT-like repeat SapB_1 PF05184.15 gi|386001908|ref|YP_005920207.1| - 1.1 9.3 0.0 1.1 9.3 0.0 4.0 4 1 1 5 5 5 0 Saposin-like type B, region 1 TetR_C_11 PF16859.5 gi|386001908|ref|YP_005920207.1| - 1.8 8.9 5.7 4.7 7.6 0.2 3.4 2 1 2 4 4 4 0 Tetracyclin repressor-like, C-terminal domain Lipoprotein_2 PF00921.17 gi|386001908|ref|YP_005920207.1| - 4.4 6.8 9.6 7.6 6.0 0.5 3.1 3 0 0 3 3 3 0 Borrelia lipoprotein NTP_transf_2 PF01909.23 gi|386001909|ref|YP_005920208.1| - 6.7e-09 35.9 0.3 8e-09 35.7 0.3 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|386001909|ref|YP_005920208.1| - 4.1e-07 30.0 0.1 4.8e-07 29.8 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|386001909|ref|YP_005920208.1| - 0.00059 20.0 0.0 0.00065 19.9 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.13 gi|386001909|ref|YP_005920208.1| - 0.038 13.8 0.0 0.047 13.5 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Adenyl_cycl_N PF12633.7 gi|386001909|ref|YP_005920208.1| - 0.13 12.1 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain Methyltransf_25 PF13649.6 gi|386001910|ref|YP_005920209.1| - 9.4e-13 48.7 0.0 1.8e-12 47.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386001910|ref|YP_005920209.1| - 1.5e-10 41.2 0.0 2.2e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|386001910|ref|YP_005920209.1| - 1.5e-09 37.3 0.0 2.1e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 gi|386001910|ref|YP_005920209.1| - 6.2e-08 32.6 0.0 8.9e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386001910|ref|YP_005920209.1| - 1.1e-07 32.5 0.0 1.7e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386001910|ref|YP_005920209.1| - 2.4e-07 31.3 0.0 4e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|386001910|ref|YP_005920209.1| - 3.7e-07 29.7 0.0 5.3e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.14 gi|386001910|ref|YP_005920209.1| - 1.5e-05 24.6 0.0 2.3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|386001910|ref|YP_005920209.1| - 7.3e-05 22.2 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|386001910|ref|YP_005920209.1| - 0.00013 21.8 0.1 0.00018 21.3 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.11 gi|386001910|ref|YP_005920209.1| - 0.00092 18.3 0.0 0.0013 17.8 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase TehB PF03848.14 gi|386001910|ref|YP_005920209.1| - 0.0027 17.1 0.0 0.0038 16.7 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB DREV PF05219.12 gi|386001910|ref|YP_005920209.1| - 0.003 16.7 0.0 0.004 16.3 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase PrmA PF06325.13 gi|386001910|ref|YP_005920209.1| - 0.004 16.6 0.1 0.004 16.6 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|386001910|ref|YP_005920209.1| - 0.016 14.7 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Met_10 PF02475.16 gi|386001910|ref|YP_005920209.1| - 0.019 14.7 0.1 0.043 13.6 0.1 1.5 1 1 0 1 1 1 0 Met-10+ like-protein CMAS PF02353.20 gi|386001910|ref|YP_005920209.1| - 0.024 14.0 0.0 0.034 13.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|386001910|ref|YP_005920209.1| - 0.041 13.8 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|386001910|ref|YP_005920209.1| - 0.044 13.4 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MetW PF07021.12 gi|386001910|ref|YP_005920209.1| - 0.098 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF938 PF06080.12 gi|386001910|ref|YP_005920209.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) SBP_bac_5 PF00496.22 gi|386001911|ref|YP_005920210.1| - 1.4e-71 241.5 0.0 1.8e-71 241.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle CxxCxxCC PF03692.15 gi|386001912|ref|YP_005920211.1| - 2.4e-14 53.8 0.1 3.7e-14 53.2 0.1 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain BPD_transp_1 PF00528.22 gi|386001913|ref|YP_005920212.1| - 2.2e-37 128.6 9.9 2.2e-37 128.6 9.9 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|386001914|ref|YP_005920213.1| - 8.6e-18 64.7 12.2 8.6e-18 64.7 12.2 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|386001914|ref|YP_005920213.1| - 8.9e-07 28.8 0.0 8.9e-07 28.8 0.0 3.4 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|386001915|ref|YP_005920214.1| - 2.9e-60 202.8 0.0 3.1e-30 105.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|386001915|ref|YP_005920214.1| - 2e-24 85.8 0.0 1.7e-15 57.3 0.0 2.4 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|386001915|ref|YP_005920214.1| - 1e-16 61.6 1.4 3.3e-05 23.9 0.1 4.1 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|386001915|ref|YP_005920214.1| - 8e-11 42.4 3.7 2.9e-05 24.3 0.1 3.9 2 2 0 2 2 2 2 AAA domain SMC_N PF02463.19 gi|386001915|ref|YP_005920214.1| - 4e-10 39.5 0.3 4.9e-06 26.1 0.1 2.9 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|386001915|ref|YP_005920214.1| - 6.6e-06 26.0 0.2 0.018 14.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|386001915|ref|YP_005920214.1| - 9.2e-06 25.7 1.9 0.056 13.4 0.0 2.9 3 0 0 3 3 3 2 RsgA GTPase AAA_29 PF13555.6 gi|386001915|ref|YP_005920214.1| - 2.2e-05 24.1 4.5 0.059 13.1 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|386001915|ref|YP_005920214.1| - 4.9e-05 23.8 4.8 0.029 14.8 0.3 2.8 2 2 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|386001915|ref|YP_005920214.1| - 7.6e-05 23.2 0.4 0.2 12.1 0.0 3.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|386001915|ref|YP_005920214.1| - 0.00017 21.6 3.2 0.021 14.7 0.1 2.5 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.6 gi|386001915|ref|YP_005920214.1| - 0.00029 21.0 0.0 0.11 12.6 0.0 2.7 3 0 0 3 3 2 1 AAA domain IstB_IS21 PF01695.17 gi|386001915|ref|YP_005920214.1| - 0.00035 20.3 5.7 2.3 7.9 0.0 4.0 5 0 0 5 5 4 2 IstB-like ATP binding protein AAA_25 PF13481.6 gi|386001915|ref|YP_005920214.1| - 0.0004 20.0 3.9 0.28 10.7 0.1 3.5 4 0 0 4 4 4 2 AAA domain APS_kinase PF01583.20 gi|386001915|ref|YP_005920214.1| - 0.0005 20.0 0.6 0.57 10.1 0.0 2.4 2 0 0 2 2 2 2 Adenylylsulphate kinase AAA_23 PF13476.6 gi|386001915|ref|YP_005920214.1| - 0.00054 20.5 0.2 0.87 10.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain MobB PF03205.14 gi|386001915|ref|YP_005920214.1| - 0.00072 19.5 2.4 0.19 11.6 0.2 2.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.18 gi|386001915|ref|YP_005920214.1| - 0.00085 19.1 0.0 0.32 10.7 0.0 2.7 3 0 0 3 3 3 1 Phosphoribulokinase / Uridine kinase family ATPase PF06745.13 gi|386001915|ref|YP_005920214.1| - 0.0012 18.2 1.4 0.4 10.0 0.1 2.4 2 0 0 2 2 2 1 KaiC AAA_18 PF13238.6 gi|386001915|ref|YP_005920214.1| - 0.0015 19.1 0.1 2.3 8.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|386001915|ref|YP_005920214.1| - 0.0027 17.7 2.6 1.2 9.2 0.1 3.6 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) PduV-EutP PF10662.9 gi|386001915|ref|YP_005920214.1| - 0.0041 16.9 1.5 0.86 9.3 0.1 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation TsaE PF02367.17 gi|386001915|ref|YP_005920214.1| - 0.0047 16.9 4.1 0.15 12.0 0.3 2.3 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|386001915|ref|YP_005920214.1| - 0.0071 15.8 0.9 4.3 6.7 0.0 3.1 3 0 0 3 3 3 0 PhoH-like protein ATP-synt_ab PF00006.25 gi|386001915|ref|YP_005920214.1| - 0.0072 16.0 0.0 0.72 9.5 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.22 gi|386001915|ref|YP_005920214.1| - 0.0073 15.5 2.7 0.074 12.2 0.4 2.7 2 1 0 2 2 2 1 NB-ARC domain MMR_HSR1 PF01926.23 gi|386001915|ref|YP_005920214.1| - 0.0075 16.3 1.3 3.8 7.6 0.0 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|386001915|ref|YP_005920214.1| - 0.0078 15.6 0.7 0.8 9.0 0.0 2.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Roc PF08477.13 gi|386001915|ref|YP_005920214.1| - 0.0087 16.3 2.6 1.3 9.2 0.2 2.5 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase Zeta_toxin PF06414.12 gi|386001915|ref|YP_005920214.1| - 0.0091 15.3 0.5 0.13 11.5 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin AAA_30 PF13604.6 gi|386001915|ref|YP_005920214.1| - 0.011 15.4 4.0 1.5 8.5 0.9 3.6 3 1 0 3 3 3 0 AAA domain Pox_A32 PF04665.12 gi|386001915|ref|YP_005920214.1| - 0.018 14.5 2.3 3 7.2 0.1 2.5 2 0 0 2 2 2 0 Poxvirus A32 protein SbcCD_C PF13558.6 gi|386001915|ref|YP_005920214.1| - 0.023 14.9 0.6 5.7 7.2 0.2 3.8 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Myosin_head PF00063.21 gi|386001915|ref|YP_005920214.1| - 0.035 12.3 0.2 1.5 6.9 0.0 2.1 2 0 0 2 2 2 0 Myosin head (motor domain) DUF87 PF01935.17 gi|386001915|ref|YP_005920214.1| - 0.036 14.2 3.3 2 8.4 0.3 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain RNA_helicase PF00910.22 gi|386001915|ref|YP_005920214.1| - 0.036 14.4 0.1 3.3 8.1 0.0 2.5 2 0 0 2 2 2 0 RNA helicase DUF2620 PF10941.8 gi|386001915|ref|YP_005920214.1| - 0.038 14.1 0.1 0.11 12.6 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF2620 AAA_7 PF12775.7 gi|386001915|ref|YP_005920214.1| - 0.041 13.4 0.5 0.91 9.0 0.1 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region Septin PF00735.18 gi|386001915|ref|YP_005920214.1| - 0.049 12.9 0.4 1.2 8.3 0.0 2.2 2 0 0 2 2 2 0 Septin NTPase_1 PF03266.15 gi|386001915|ref|YP_005920214.1| - 0.12 12.3 3.9 2.3 8.1 0.2 2.8 3 0 0 3 3 3 0 NTPase AAA_28 PF13521.6 gi|386001915|ref|YP_005920214.1| - 0.13 12.5 0.6 21 5.3 0.4 2.5 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|386001915|ref|YP_005920214.1| - 0.17 11.6 1.1 15 5.3 0.3 2.7 2 2 0 2 2 2 0 DEAD/DEAH box helicase CbiA PF01656.23 gi|386001915|ref|YP_005920214.1| - 0.19 11.8 4.1 3.9 7.5 0.3 2.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 gi|386001915|ref|YP_005920214.1| - 0.22 11.8 2.3 9.2 6.6 0.0 3.4 4 0 0 4 4 3 0 AAA domain DLIC PF05783.11 gi|386001915|ref|YP_005920214.1| - 0.31 9.8 1.0 11 4.7 0.1 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) TIP49 PF06068.13 gi|386001915|ref|YP_005920214.1| - 0.36 10.0 1.6 8.9 5.4 0.1 2.3 2 0 0 2 2 2 0 TIP49 P-loop domain TniB PF05621.11 gi|386001915|ref|YP_005920214.1| - 0.37 10.2 3.4 69 2.8 0.1 3.9 4 0 0 4 4 4 0 Bacterial TniB protein Sigma54_activat PF00158.26 gi|386001915|ref|YP_005920214.1| - 0.4 10.4 2.7 3.7 7.2 0.1 2.7 3 0 0 3 3 2 0 Sigma-54 interaction domain Cuticle_1 PF08140.11 gi|386001915|ref|YP_005920214.1| - 1.1 9.3 3.4 13 5.9 0.0 3.5 4 0 0 4 4 3 0 Crustacean cuticle protein repeat Nitroreductase PF00881.24 gi|386001917|ref|YP_005920216.1| - 6.8e-11 42.5 0.0 0.00021 21.4 0.0 2.6 2 1 0 2 2 2 2 Nitroreductase family Rhodanese PF00581.20 gi|386001918|ref|YP_005920217.1| - 4.7e-11 43.2 0.0 7.3e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 Rhodanese-like domain DUF3417 PF11897.8 gi|386001919|ref|YP_005920218.1| - 5.9e-31 107.2 0.0 2.1e-30 105.4 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) Phosphorylase PF00343.20 gi|386001919|ref|YP_005920218.1| - 6.4e-28 97.5 0.0 4.3e-13 48.5 0.0 3.1 3 0 0 3 3 3 3 Carbohydrate phosphorylase Cpn60_TCP1 PF00118.24 gi|386001920|ref|YP_005920219.1| - 2.4e-183 610.3 20.6 2.7e-183 610.1 20.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TrwC PF08751.11 gi|386001920|ref|YP_005920219.1| - 0.0042 16.6 0.3 0.0085 15.6 0.0 1.6 2 0 0 2 2 2 1 TrwC relaxase Spt5-NGN PF03439.13 gi|386001921|ref|YP_005920220.1| - 1.6e-16 60.0 0.1 2.5e-16 59.3 0.1 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|386001921|ref|YP_005920220.1| - 1.3e-07 31.3 1.0 2.3e-05 24.2 0.2 2.4 2 0 0 2 2 2 2 KOW motif Glyco_hydro_65C PF03633.15 gi|386001921|ref|YP_005920220.1| - 0.013 15.4 0.4 0.021 14.8 0.4 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain Ribosomal_L11_N PF03946.14 gi|386001922|ref|YP_005920221.1| - 2.5e-24 84.9 0.3 4.7e-24 84.0 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|386001922|ref|YP_005920221.1| - 2.6e-20 72.7 1.3 2.6e-20 72.7 1.3 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|386001923|ref|YP_005920222.1| - 3.4e-43 147.8 0.0 4e-43 147.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|386001924|ref|YP_005920223.1| - 1.5e-21 76.4 0.1 2.5e-21 75.7 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|386001924|ref|YP_005920223.1| - 2.3e-19 69.2 0.3 4.8e-19 68.1 0.3 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P MazG PF03819.17 gi|386001924|ref|YP_005920223.1| - 0.042 14.0 0.1 0.1 12.8 0.1 1.6 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain Ribosomal_60s PF00428.19 gi|386001924|ref|YP_005920223.1| - 0.86 10.2 20.7 0.24 12.0 16.8 2.2 2 1 0 2 2 2 0 60s Acidic ribosomal protein Ribosomal_60s PF00428.19 gi|386001925|ref|YP_005920224.1| - 6.6e-18 65.1 15.4 7.7e-18 64.9 15.4 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein CAP_N PF01213.19 gi|386001925|ref|YP_005920224.1| - 0.13 11.7 0.3 0.14 11.6 0.3 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal dCache_1 PF02743.18 gi|386001926|ref|YP_005920225.1| - 6.6e-07 29.4 0.0 8.5e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Cache domain sCache_3_2 PF17203.4 gi|386001926|ref|YP_005920225.1| - 0.0036 17.4 0.0 0.0066 16.6 0.0 1.4 1 0 0 1 1 1 1 Single cache domain 3 Hydrolase PF00702.26 gi|386001926|ref|YP_005920225.1| - 0.013 15.7 0.0 0.023 15.0 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase IclR PF01614.18 gi|386001926|ref|YP_005920225.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial transcriptional regulator SNCAIP_SNCA_bd PF16700.5 gi|386001926|ref|YP_005920225.1| - 0.23 11.2 0.1 0.61 9.9 0.0 1.6 2 0 0 2 2 2 0 Synphilin-1 alpha-Synuclein-binding domain MC1 PF05854.11 gi|386001927|ref|YP_005920226.1| - 2.4e-38 130.3 0.4 3.1e-38 130.0 0.4 1.1 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 APS_kinase PF01583.20 gi|386001928|ref|YP_005920227.1| - 5.7e-28 97.8 0.0 7.9e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|386001928|ref|YP_005920227.1| - 1.1e-13 51.6 0.0 1.4e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|386001928|ref|YP_005920227.1| - 9.6e-08 32.6 0.0 1.4e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|386001928|ref|YP_005920227.1| - 1.6e-07 31.1 0.0 1.9e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|386001928|ref|YP_005920227.1| - 0.00011 21.6 0.0 0.00018 20.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin MeaB PF03308.16 gi|386001928|ref|YP_005920227.1| - 0.00018 20.6 0.1 0.00029 19.9 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|386001928|ref|YP_005920227.1| - 0.0002 21.8 0.0 0.00028 21.3 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|386001928|ref|YP_005920227.1| - 0.00026 21.4 0.6 0.0037 17.7 0.3 2.0 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) CPT PF07931.12 gi|386001928|ref|YP_005920227.1| - 0.0016 18.3 0.0 0.013 15.3 0.0 2.1 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein 6PF2K PF01591.18 gi|386001928|ref|YP_005920227.1| - 0.0022 17.3 0.1 0.014 14.7 0.1 1.9 1 1 0 1 1 1 1 6-phosphofructo-2-kinase NTPase_1 PF03266.15 gi|386001928|ref|YP_005920227.1| - 0.0036 17.2 0.1 0.0057 16.6 0.1 1.3 1 0 0 1 1 1 1 NTPase AAA_28 PF13521.6 gi|386001928|ref|YP_005920227.1| - 0.0046 17.2 0.4 0.012 15.9 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|386001928|ref|YP_005920227.1| - 0.0097 15.6 0.1 0.033 13.9 0.1 1.7 2 1 0 2 2 1 1 AAA domain NACHT PF05729.12 gi|386001928|ref|YP_005920227.1| - 0.035 14.0 0.2 0.068 13.1 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|386001928|ref|YP_005920227.1| - 0.04 14.2 0.1 0.073 13.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|386001928|ref|YP_005920227.1| - 0.058 13.8 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MobB PF03205.14 gi|386001928|ref|YP_005920227.1| - 0.065 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|386001928|ref|YP_005920227.1| - 0.069 12.9 0.0 0.088 12.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_17 PF13207.6 gi|386001928|ref|YP_005920227.1| - 0.09 13.2 0.3 0.22 12.0 0.3 1.7 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|386001928|ref|YP_005920227.1| - 0.099 12.4 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Thymidylate_kin PF02223.17 gi|386001928|ref|YP_005920227.1| - 0.14 11.9 0.1 0.25 11.0 0.1 1.4 1 1 0 1 1 1 0 Thymidylate kinase NB-ARC PF00931.22 gi|386001928|ref|YP_005920227.1| - 0.14 11.3 0.1 0.22 10.7 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|386001928|ref|YP_005920227.1| - 0.17 11.9 0.2 0.28 11.2 0.2 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|386001928|ref|YP_005920227.1| - 0.22 10.6 0.8 6.9 5.8 0.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF815) tRNA_int_endo PF01974.17 gi|386001930|ref|YP_005920229.1| - 1.6e-50 169.1 4.4 5.4e-25 87.3 1.5 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|386001930|ref|YP_005920229.1| - 3.7e-40 135.4 0.2 5.9e-21 73.9 0.0 2.6 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|386001930|ref|YP_005920229.1| - 0.0031 17.7 0.2 2.7 8.2 0.0 2.8 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term TPR_2 PF07719.17 gi|386001931|ref|YP_005920230.1| - 7e-17 60.1 3.4 5.7e-06 26.1 0.1 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|386001931|ref|YP_005920230.1| - 1.5e-15 56.3 0.1 4.6e-05 23.1 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386001931|ref|YP_005920230.1| - 5.9e-13 48.3 0.3 0.0046 16.6 0.0 3.1 3 0 0 3 3 3 3 TPR repeat TPR_16 PF13432.6 gi|386001931|ref|YP_005920230.1| - 1.9e-10 41.2 15.0 0.00021 21.8 5.3 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001931|ref|YP_005920230.1| - 3.1e-09 36.9 16.0 0.0022 18.7 2.1 3.7 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001931|ref|YP_005920230.1| - 1.6e-08 34.6 11.0 2.4e-08 34.0 5.9 2.2 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386001931|ref|YP_005920230.1| - 2.3e-08 33.6 0.0 0.16 12.3 0.0 3.6 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386001931|ref|YP_005920230.1| - 2.7e-08 34.2 9.5 2.6e-05 24.6 2.2 2.2 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386001931|ref|YP_005920230.1| - 1.3e-07 31.5 0.1 1.5 9.4 0.0 4.3 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001931|ref|YP_005920230.1| - 5.9e-07 29.1 2.6 0.051 13.6 0.3 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386001931|ref|YP_005920230.1| - 9e-06 25.8 0.2 0.016 15.4 0.0 2.1 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|386001931|ref|YP_005920230.1| - 1.1e-05 25.6 5.7 0.054 13.8 2.0 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_15 PF13429.6 gi|386001931|ref|YP_005920230.1| - 0.00059 19.1 2.8 0.00077 18.8 2.8 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386001931|ref|YP_005920230.1| - 0.0014 19.1 4.6 3.8 8.4 0.0 4.1 4 0 0 4 4 4 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|386001931|ref|YP_005920230.1| - 0.021 13.8 0.1 0.054 12.4 0.0 1.5 1 1 1 2 2 2 0 NMDA receptor-regulated protein 1 EF1_GNE PF00736.19 gi|386001932|ref|YP_005920231.1| - 5.8e-18 64.9 0.0 6.2e-18 64.8 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF5555 PF17710.1 gi|386001932|ref|YP_005920231.1| - 0.16 11.5 0.1 0.22 11.0 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5555) AA_kinase PF00696.28 gi|386001933|ref|YP_005920232.1| - 4.7e-12 46.0 0.6 3.5e-06 26.8 0.0 2.1 1 1 0 2 2 2 2 Amino acid kinase family NUDIX PF00293.28 gi|386001934|ref|YP_005920233.1| - 2.3e-12 47.1 0.0 2.6e-12 46.9 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain tRNA-synt_1c PF00749.21 gi|386001935|ref|YP_005920234.1| - 1e-60 205.3 0.0 1.2e-60 205.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|386001935|ref|YP_005920234.1| - 3.3e-20 72.7 0.0 5.1e-20 72.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain UbiA PF01040.18 gi|386001937|ref|YP_005920236.1| - 1.5e-43 149.0 18.9 1.6e-43 148.9 18.5 1.2 1 1 0 1 1 1 1 UbiA prenyltransferase family MpPF26 PF07666.11 gi|386001937|ref|YP_005920236.1| - 6.3 6.9 6.8 1.2 9.2 0.3 2.5 3 0 0 3 3 3 0 M penetrans paralogue family 26 Glycos_transf_3 PF00591.21 gi|386001939|ref|YP_005920238.1| - 8.1e-56 189.4 0.0 1.2e-55 188.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|386001939|ref|YP_005920238.1| - 5.2e-12 45.4 0.0 1.3e-11 44.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain ADH_N PF08240.12 gi|386001940|ref|YP_005920239.1| - 1e-25 89.7 0.8 1.9e-25 88.9 0.8 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|386001940|ref|YP_005920239.1| - 1.5e-08 34.7 0.0 2.1e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase FAD_binding_2 PF00890.24 gi|386001940|ref|YP_005920239.1| - 0.0013 17.9 0.3 0.0021 17.2 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|386001940|ref|YP_005920239.1| - 0.032 12.9 0.2 0.045 12.5 0.2 1.1 1 0 0 1 1 1 0 HI0933-like protein DUF2285 PF10074.9 gi|386001940|ref|YP_005920239.1| - 0.035 14.7 0.6 0.077 13.6 0.6 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2285) Pyr_redox_3 PF13738.6 gi|386001940|ref|YP_005920239.1| - 0.11 11.7 0.4 0.15 11.2 0.4 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|386001940|ref|YP_005920239.1| - 0.13 11.5 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain tRNA_deacylase PF04414.12 gi|386001941|ref|YP_005920240.1| - 8e-64 214.9 0.0 9.4e-64 214.7 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase MarR PF01047.22 gi|386001942|ref|YP_005920241.1| - 1.2e-05 25.1 0.0 0.14 12.1 0.0 2.4 2 0 0 2 2 2 2 MarR family MarR_2 PF12802.7 gi|386001942|ref|YP_005920241.1| - 1.5e-05 24.8 0.0 0.38 10.7 0.0 3.2 3 0 0 3 3 3 2 MarR family TrmB PF01978.19 gi|386001942|ref|YP_005920241.1| - 0.00018 21.3 0.1 1.2 9.0 0.0 3.3 3 0 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|386001942|ref|YP_005920241.1| - 0.00096 18.7 0.0 0.12 12.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|386001942|ref|YP_005920241.1| - 0.0061 16.6 0.0 4 7.6 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix HTH_23 PF13384.6 gi|386001942|ref|YP_005920241.1| - 0.039 13.7 0.0 7.7 6.4 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|386001942|ref|YP_005920241.1| - 0.053 13.4 0.0 1.3 8.9 0.0 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|386001942|ref|YP_005920241.1| - 0.079 12.9 0.0 3.9 7.5 0.0 2.7 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|386001942|ref|YP_005920241.1| - 0.18 11.9 0.0 17 5.5 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix Lactamase_B PF00753.27 gi|386001943|ref|YP_005920242.1| - 5.5e-17 62.4 0.2 8.6e-12 45.5 0.0 2.2 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|386001943|ref|YP_005920242.1| - 0.0057 16.6 0.0 0.0085 16.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|386001943|ref|YP_005920242.1| - 0.0083 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lyase_1 PF00206.20 gi|386001944|ref|YP_005920243.1| - 6.1e-50 170.4 0.1 1.2e-49 169.4 0.0 1.5 2 0 0 2 2 2 1 Lyase ADSL_C PF10397.9 gi|386001944|ref|YP_005920243.1| - 8.9e-22 77.4 1.0 3.3e-21 75.6 1.0 2.0 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|386001944|ref|YP_005920243.1| - 0.00096 19.2 0.9 0.0024 17.9 0.2 2.0 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal FumaraseC_C PF10415.9 gi|386001944|ref|YP_005920243.1| - 0.015 15.7 0.4 0.079 13.4 0.1 2.5 2 0 0 2 2 2 0 Fumarase C C-terminus ASL_C2 PF14698.6 gi|386001944|ref|YP_005920243.1| - 0.39 11.5 2.9 1.2 10.0 0.3 2.9 2 1 1 3 3 3 0 Argininosuccinate lyase C-terminal 5_nucleotid_C PF02872.18 gi|386001945|ref|YP_005920244.1| - 6.5e-40 136.9 0.0 9.5e-40 136.4 0.0 1.2 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|386001945|ref|YP_005920244.1| - 4.8e-09 37.0 0.0 7.7e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|386001945|ref|YP_005920244.1| - 0.0012 19.1 0.0 0.0061 16.8 0.0 2.1 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain CitMHS PF03600.16 gi|386001946|ref|YP_005920245.1| - 4.9e-35 121.2 32.3 6e-35 120.9 22.8 2.2 1 1 1 2 2 2 2 Citrate transporter YcaO PF02624.16 gi|386001947|ref|YP_005920246.1| - 1.1e-94 317.3 0.7 2e-94 316.5 0.7 1.4 2 0 0 2 2 2 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding TfuA PF07812.12 gi|386001948|ref|YP_005920247.1| - 3.5e-45 152.6 0.1 6.1e-45 151.8 0.1 1.4 1 0 0 1 1 1 1 TfuA-like protein ThiS PF02597.20 gi|386001949|ref|YP_005920248.1| - 9.9e-18 64.6 0.0 1.1e-17 64.4 0.0 1.0 1 0 0 1 1 1 1 ThiS family ThiF PF00899.21 gi|386001950|ref|YP_005920249.1| - 4.9e-61 206.2 0.0 5.7e-61 206.0 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|386001950|ref|YP_005920249.1| - 0.0042 17.4 0.3 0.012 15.9 0.3 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|386001950|ref|YP_005920249.1| - 0.014 15.4 0.1 0.031 14.3 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|386001950|ref|YP_005920249.1| - 0.022 14.3 0.1 0.03 13.9 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1890 PF09001.11 gi|386001951|ref|YP_005920250.1| - 4.4e-53 179.4 0.0 4.9e-53 179.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) Flavodoxin_NdrI PF07972.11 gi|386001951|ref|YP_005920250.1| - 0.16 12.2 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 NrdI Flavodoxin like DUF1894 PF08979.11 gi|386001952|ref|YP_005920251.1| - 3.3e-38 129.9 0.1 3.6e-38 129.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) ThiS PF02597.20 gi|386001953|ref|YP_005920252.1| - 1.6e-15 57.5 0.1 1.8e-15 57.3 0.1 1.1 1 0 0 1 1 1 1 ThiS family TrkA_C PF02080.21 gi|386001953|ref|YP_005920252.1| - 0.083 12.7 0.1 0.16 11.8 0.1 1.5 2 0 0 2 2 2 0 TrkA-C domain MoaE PF02391.17 gi|386001954|ref|YP_005920253.1| - 8.6e-32 109.8 0.2 9.8e-32 109.6 0.2 1.0 1 0 0 1 1 1 1 MoaE protein Baculo_E25 PF05274.11 gi|386001954|ref|YP_005920253.1| - 0.1 12.4 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein E25 GvpD PF07088.11 gi|386001955|ref|YP_005920254.1| - 5.4e-38 130.8 0.0 2.6e-37 128.6 0.0 1.8 2 0 0 2 2 2 1 GvpD gas vesicle protein ATPase PF06745.13 gi|386001955|ref|YP_005920254.1| - 9.3e-13 48.0 0.1 1.4e-11 44.2 0.0 2.2 2 0 0 2 2 2 1 KaiC AAA_16 PF13191.6 gi|386001955|ref|YP_005920254.1| - 5.2e-05 23.7 0.0 0.00012 22.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|386001955|ref|YP_005920254.1| - 0.00073 19.8 0.0 0.0023 18.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|386001955|ref|YP_005920254.1| - 0.0011 18.6 0.0 0.0041 16.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|386001955|ref|YP_005920254.1| - 0.0013 18.1 0.0 0.37 10.1 0.0 2.3 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|386001955|ref|YP_005920254.1| - 0.0015 18.3 0.0 0.022 14.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|386001955|ref|YP_005920254.1| - 0.0039 17.6 0.0 0.01 16.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|386001955|ref|YP_005920254.1| - 0.005 16.0 0.0 0.0087 15.3 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain DUF2075 PF09848.9 gi|386001955|ref|YP_005920254.1| - 0.018 14.3 0.0 0.031 13.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|386001955|ref|YP_005920254.1| - 0.025 14.4 0.0 0.04 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|386001955|ref|YP_005920254.1| - 0.031 14.8 0.1 0.055 14.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|386001955|ref|YP_005920254.1| - 0.031 14.0 0.0 0.15 11.8 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein TIP49 PF06068.13 gi|386001955|ref|YP_005920254.1| - 0.047 12.9 0.0 0.077 12.2 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain NACHT PF05729.12 gi|386001955|ref|YP_005920254.1| - 0.052 13.5 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|386001955|ref|YP_005920254.1| - 0.056 14.0 0.0 0.097 13.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter ATP-synt_ab PF00006.25 gi|386001955|ref|YP_005920254.1| - 0.059 13.0 0.0 0.084 12.5 0.0 1.5 2 0 0 2 2 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.6 gi|386001955|ref|YP_005920254.1| - 0.064 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|386001955|ref|YP_005920254.1| - 0.065 12.1 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|386001955|ref|YP_005920254.1| - 0.12 11.8 0.0 4.2 6.6 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_14 PF13173.6 gi|386001955|ref|YP_005920254.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|386001955|ref|YP_005920254.1| - 0.14 12.5 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|386001955|ref|YP_005920254.1| - 0.22 11.4 0.4 0.43 10.5 0.1 1.7 2 0 0 2 2 1 0 NTPase FaeA PF04703.12 gi|386001956|ref|YP_005920255.1| - 0.00011 22.5 0.0 0.00025 21.4 0.0 1.6 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.6 gi|386001956|ref|YP_005920255.1| - 0.0012 18.3 0.0 0.0028 17.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Phage_r1t_holin PF16945.5 gi|386001956|ref|YP_005920255.1| - 0.0021 18.2 0.0 0.004 17.3 0.0 1.4 1 0 0 1 1 1 1 Putative lactococcus lactis phage r1t holin HTH_IclR PF09339.10 gi|386001956|ref|YP_005920255.1| - 0.0034 17.1 0.1 0.013 15.3 0.0 1.9 2 1 0 2 2 2 1 IclR helix-turn-helix domain LacI PF00356.21 gi|386001956|ref|YP_005920255.1| - 0.01 15.6 2.2 0.046 13.5 1.2 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family TrmB PF01978.19 gi|386001956|ref|YP_005920255.1| - 0.015 15.2 0.4 0.03 14.2 0.1 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|386001956|ref|YP_005920255.1| - 0.02 14.7 0.1 0.1 12.4 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|386001956|ref|YP_005920255.1| - 0.039 14.1 0.5 0.11 12.7 0.1 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_micro PF17007.5 gi|386001956|ref|YP_005920255.1| - 0.041 12.7 0.0 0.054 12.3 0.0 1.1 1 0 0 1 1 1 0 HTH-like LZ_Tnp_IS481 PF13011.6 gi|386001956|ref|YP_005920255.1| - 0.077 13.5 0.0 0.25 11.9 0.0 1.9 2 1 0 2 2 2 0 leucine-zipper of insertion element IS481 HTH_11 PF08279.12 gi|386001956|ref|YP_005920255.1| - 0.089 12.8 0.1 0.32 11.0 0.0 1.9 2 0 0 2 2 2 0 HTH domain TBPIP PF07106.13 gi|386001956|ref|YP_005920255.1| - 0.095 12.7 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain z-alpha PF02295.17 gi|386001956|ref|YP_005920255.1| - 0.16 12.1 0.2 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain MtrA PF04208.14 gi|386001957|ref|YP_005920256.1| - 1.9e-54 183.9 0.0 2.4e-54 183.6 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A TPR_2 PF07719.17 gi|386001958|ref|YP_005920257.1| - 4.8e-28 95.0 0.2 9.5e-06 25.4 0.0 6.8 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386001958|ref|YP_005920257.1| - 1.3e-22 78.0 0.0 0.00097 19.2 0.0 5.9 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|386001958|ref|YP_005920257.1| - 2.6e-22 77.7 0.0 7e-06 25.6 0.0 6.5 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386001958|ref|YP_005920257.1| - 1.6e-19 70.2 0.1 3.6e-08 33.8 0.0 4.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386001958|ref|YP_005920257.1| - 3.8e-19 67.7 12.6 3.3e-05 24.3 0.5 6.8 4 3 3 7 7 7 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386001958|ref|YP_005920257.1| - 1.4e-16 60.8 5.0 5.4e-07 30.2 1.9 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386001958|ref|YP_005920257.1| - 5.9e-15 55.2 7.9 0.00015 21.8 0.1 4.2 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386001958|ref|YP_005920257.1| - 1.7e-11 43.6 1.0 0.0052 16.4 0.0 5.4 5 1 1 6 6 6 2 TPR repeat TPR_12 PF13424.6 gi|386001958|ref|YP_005920257.1| - 4.8e-09 36.4 8.0 0.00082 19.6 0.1 5.7 4 3 3 7 7 7 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386001958|ref|YP_005920257.1| - 8.8e-08 32.3 1.1 2.9 8.7 0.1 6.0 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386001958|ref|YP_005920257.1| - 2.8e-07 30.4 0.0 0.0019 18.4 0.0 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386001958|ref|YP_005920257.1| - 6.8e-07 28.9 3.5 2.4 8.4 0.0 5.6 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386001958|ref|YP_005920257.1| - 2.9e-05 23.8 12.7 9.4 6.3 0.5 6.6 7 0 0 7 7 7 0 Tetratricopeptide repeat DUF3856 PF12968.7 gi|386001958|ref|YP_005920257.1| - 0.00011 22.2 0.3 4.8 7.2 0.0 3.5 3 0 0 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_4 PF07721.14 gi|386001958|ref|YP_005920257.1| - 0.00013 22.3 5.3 0.065 13.9 0.6 4.8 5 0 0 5 5 4 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386001958|ref|YP_005920257.1| - 0.00022 21.4 0.0 0.25 11.6 0.0 3.7 2 2 2 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|386001958|ref|YP_005920257.1| - 0.00044 20.3 0.0 5.3 7.2 0.0 4.3 6 0 0 6 6 5 1 Fis1 C-terminal tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|386001958|ref|YP_005920257.1| - 0.008 16.6 0.0 4.4 7.7 0.0 3.3 2 1 0 2 2 2 1 Alkyl sulfatase dimerisation MIT PF04212.18 gi|386001958|ref|YP_005920257.1| - 0.0096 16.0 0.9 2.3 8.3 0.1 3.8 3 2 1 4 4 4 1 MIT (microtubule interacting and transport) domain HrpB1_HrpK PF09613.10 gi|386001958|ref|YP_005920257.1| - 0.023 14.3 0.2 4 7.1 0.0 3.0 2 1 0 3 3 3 0 Bacterial type III secretion protein (HrpB1_HrpK) SRP_TPR_like PF17004.5 gi|386001958|ref|YP_005920257.1| - 0.034 14.2 0.0 1.2 9.2 0.0 2.6 3 0 0 3 3 3 0 Putative TPR-like repeat ChAPs PF09295.10 gi|386001958|ref|YP_005920257.1| - 0.099 11.6 0.0 0.83 8.6 0.0 2.1 2 0 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) TPR_20 PF14561.6 gi|386001958|ref|YP_005920257.1| - 0.1 12.9 0.0 0.85 10.0 0.0 2.5 2 1 1 3 3 3 0 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|386001958|ref|YP_005920257.1| - 0.22 11.0 0.8 50 3.5 0.0 3.2 3 0 0 3 3 3 0 SHNi-TPR PPR PF01535.20 gi|386001958|ref|YP_005920257.1| - 5.3 7.5 6.2 5.9 7.4 0.1 4.1 6 0 0 6 6 4 0 PPR repeat UvrB_inter PF17757.1 gi|386001959|ref|YP_005920258.1| - 1.7e-28 98.6 0.9 5.8e-28 96.9 0.2 2.2 2 0 0 2 2 2 1 UvrB interaction domain UvrB PF12344.8 gi|386001959|ref|YP_005920258.1| - 6.5e-20 70.7 0.2 2e-19 69.1 0.2 1.9 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|386001959|ref|YP_005920258.1| - 3.6e-16 59.5 0.1 8.6e-16 58.3 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|386001959|ref|YP_005920258.1| - 4.3e-12 46.4 0.0 4.5e-11 43.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.19 gi|386001959|ref|YP_005920258.1| - 2.2e-09 36.8 2.4 7.5e-09 35.1 2.4 2.0 1 0 0 1 1 1 1 UvrB/uvrC motif AAA_30 PF13604.6 gi|386001959|ref|YP_005920258.1| - 0.00015 21.6 0.0 0.0018 18.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain DEAD PF00270.29 gi|386001959|ref|YP_005920258.1| - 0.00016 21.5 0.0 0.0093 15.8 0.0 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.6 gi|386001959|ref|YP_005920258.1| - 0.036 14.4 1.5 5 7.5 0.2 2.7 3 0 0 3 3 2 0 AAA domain UB2H PF14814.6 gi|386001959|ref|YP_005920258.1| - 0.067 13.2 0.0 0.21 11.6 0.0 1.9 1 1 0 1 1 1 0 Bifunctional transglycosylase second domain DUF87 PF01935.17 gi|386001959|ref|YP_005920258.1| - 0.071 13.2 0.2 0.22 11.6 0.2 1.8 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_16 PF13191.6 gi|386001959|ref|YP_005920258.1| - 0.079 13.3 0.0 0.39 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.22 gi|386001959|ref|YP_005920258.1| - 0.21 11.2 1.2 0.33 10.5 0.3 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CMD PF02627.20 gi|386001960|ref|YP_005920259.1| - 4e-13 49.2 0.0 4.6e-13 49.0 0.0 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family LRIF1 PF15741.5 gi|386001960|ref|YP_005920259.1| - 0.069 11.7 0.0 0.075 11.6 0.0 1.0 1 0 0 1 1 1 0 Ligand-dependent nuclear receptor-interacting factor 1 Na_H_Exchanger PF00999.21 gi|386001961|ref|YP_005920260.1| - 7.9e-61 205.9 53.9 1.1e-60 205.5 53.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|386001961|ref|YP_005920260.1| - 9.9e-24 83.8 0.6 2e-23 82.9 0.6 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|386001961|ref|YP_005920260.1| - 6.2e-16 58.0 0.2 6.2e-16 58.0 0.2 2.2 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|386001961|ref|YP_005920260.1| - 0.058 13.8 0.3 0.15 12.5 0.3 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Prominin PF05478.11 gi|386001961|ref|YP_005920260.1| - 0.27 9.1 0.5 0.47 8.3 0.5 1.3 1 0 0 1 1 1 0 Prominin Radical_SAM PF04055.21 gi|386001962|ref|YP_005920261.1| - 3.2e-28 99.2 0.1 6e-28 98.3 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|386001962|ref|YP_005920261.1| - 3.8e-10 40.1 0.4 9e-10 38.9 0.4 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|386001962|ref|YP_005920261.1| - 9.1e-09 35.7 0.0 1.5e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|386001962|ref|YP_005920261.1| - 4.9e-05 23.5 0.0 8.9e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|386001963|ref|YP_005920262.1| - 5.9e-49 166.9 3.0 1.6e-48 165.5 0.9 2.4 3 0 0 3 3 3 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.15 gi|386001963|ref|YP_005920262.1| - 8.4e-45 152.9 0.2 1.5e-44 152.1 0.2 1.4 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Radical_SAM PF04055.21 gi|386001963|ref|YP_005920262.1| - 0.13 12.6 0.0 2.1 8.7 0.0 2.5 2 1 0 2 2 2 0 Radical SAM superfamily Porphobil_deam PF01379.20 gi|386001964|ref|YP_005920263.1| - 7.4e-60 202.0 0.0 1.1e-59 201.4 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|386001964|ref|YP_005920263.1| - 2.2e-10 40.8 0.3 4.5e-10 39.8 0.3 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.21 gi|386001965|ref|YP_005920264.1| - 1.8e-63 214.6 0.0 2.3e-63 214.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III DUF111 PF01969.17 gi|386001966|ref|YP_005920265.1| - 4.2e-126 421.0 0.2 4.8e-126 420.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Molybdopterin PF00384.22 gi|386001967|ref|YP_005920266.1| - 6.4e-84 282.4 0.0 7.7e-84 282.1 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|386001967|ref|YP_005920266.1| - 4.4e-30 104.0 0.0 9.1e-30 102.9 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|386001967|ref|YP_005920266.1| - 4.1e-20 71.5 2.5 5.7e-20 71.1 0.5 2.4 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.6 gi|386001967|ref|YP_005920266.1| - 7.6e-19 67.5 0.1 2.4e-18 66.0 0.1 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|386001967|ref|YP_005920266.1| - 8e-09 34.9 7.5 0.00064 19.2 3.6 3.0 1 1 1 2 2 2 2 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_7 PF12838.7 gi|386001967|ref|YP_005920266.1| - 5.7e-07 30.0 19.5 5e-06 27.0 7.7 4.5 1 1 3 4 4 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386001967|ref|YP_005920266.1| - 6.8e-07 28.9 1.4 6.8e-07 28.9 1.4 4.1 6 0 0 6 6 5 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|386001967|ref|YP_005920266.1| - 7.5e-06 26.0 7.5 7.5e-06 26.0 7.5 4.2 4 1 1 5 5 5 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386001967|ref|YP_005920266.1| - 2.3e-05 24.4 4.4 2.3e-05 24.4 4.4 3.0 4 1 0 4 4 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386001967|ref|YP_005920266.1| - 0.00011 22.1 10.0 0.00035 20.5 0.7 4.3 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386001967|ref|YP_005920266.1| - 0.0027 18.6 3.8 0.0027 18.6 3.8 3.7 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|386001967|ref|YP_005920266.1| - 0.0072 16.4 5.1 0.0072 16.4 5.1 4.1 4 1 0 4 4 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386001967|ref|YP_005920266.1| - 0.018 16.0 6.0 0.018 16.0 6.0 5.0 7 0 0 7 7 4 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|386001967|ref|YP_005920266.1| - 0.71 10.7 6.9 14 6.5 0.5 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF364 PF04016.12 gi|386001968|ref|YP_005920267.1| - 9.5e-09 35.0 0.0 2.1e-08 33.9 0.0 1.5 2 0 0 2 2 2 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|386001968|ref|YP_005920267.1| - 0.06 13.6 0.1 0.13 12.5 0.1 1.6 1 0 0 1 1 1 0 Putative heavy-metal chelation FdhD-NarQ PF02634.15 gi|386001969|ref|YP_005920268.1| - 1.7e-53 181.8 0.2 5e-44 150.8 0.1 2.0 1 1 1 2 2 2 2 FdhD/NarQ family Molybdopterin PF00384.22 gi|386001970|ref|YP_005920269.1| - 6.7e-88 295.5 0.0 7.9e-88 295.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|386001970|ref|YP_005920269.1| - 1.4e-31 108.8 0.0 3.2e-31 107.6 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|386001970|ref|YP_005920269.1| - 0.047 13.7 0.0 0.095 12.7 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Molybdopterin PF00384.22 gi|386001971|ref|YP_005920270.1| - 3e-07 29.7 0.0 4.4e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.22 gi|386001971|ref|YP_005920270.1| - 0.033 13.9 0.0 0.15 11.8 0.0 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Molydop_binding PF01568.21 gi|386001972|ref|YP_005920271.1| - 4.4e-08 33.1 0.0 4.8e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain GXGXG PF01493.19 gi|386001973|ref|YP_005920272.1| - 2e-07 30.8 20.5 4.5e-07 29.6 20.3 1.5 1 1 0 1 1 1 1 GXGXG motif Amidohydro_3 PF07969.11 gi|386001974|ref|YP_005920273.1| - 3e-95 320.4 4.7 3.6e-95 320.2 4.7 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|386001974|ref|YP_005920273.1| - 2.7e-05 23.7 2.0 0.035 13.4 0.0 2.9 2 1 0 2 2 2 2 Amidohydrolase family GSIII_N PF12437.8 gi|386001974|ref|YP_005920273.1| - 0.12 12.1 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 Glutamine synthetase type III N terminal Fer4 PF00037.27 gi|386001975|ref|YP_005920274.1| - 4.8e-52 171.8 80.4 1.6e-08 34.0 3.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386001975|ref|YP_005920274.1| - 3.4e-40 136.4 92.3 1.3e-12 48.1 8.9 5.5 3 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386001975|ref|YP_005920274.1| - 1.3e-34 118.9 50.6 8.5e-11 42.6 6.1 7.3 7 0 0 7 7 7 7 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|386001975|ref|YP_005920274.1| - 4.5e-33 112.0 85.7 4.4e-07 29.7 2.7 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.6 gi|386001975|ref|YP_005920274.1| - 1.8e-32 111.2 56.6 4.1e-09 36.4 5.4 6.1 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386001975|ref|YP_005920274.1| - 1.2e-31 108.6 62.8 3.8e-07 30.1 8.7 7.2 5 3 3 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386001975|ref|YP_005920274.1| - 6.7e-30 103.0 63.5 1.1e-06 28.7 7.6 6.6 5 2 1 6 6 6 6 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386001975|ref|YP_005920274.1| - 3.4e-26 89.7 77.8 2.9e-05 23.9 2.0 8.2 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386001975|ref|YP_005920274.1| - 6.3e-22 77.8 52.0 9e-09 35.7 4.8 5.8 5 1 0 5 5 5 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386001975|ref|YP_005920274.1| - 8.2e-18 63.4 73.9 0.0003 21.0 2.0 8.2 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_17 PF13534.6 gi|386001975|ref|YP_005920274.1| - 8.8e-18 64.6 55.2 3.4e-05 24.3 5.6 6.9 4 3 3 7 7 7 6 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386001975|ref|YP_005920274.1| - 4e-13 49.3 108.5 0.0053 17.6 5.6 8.3 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_15 PF13459.6 gi|386001975|ref|YP_005920274.1| - 6.1e-10 39.7 59.9 0.062 14.0 0.2 8.7 8 1 0 8 8 8 6 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|386001975|ref|YP_005920274.1| - 7.4e-10 39.2 73.7 0.046 14.3 2.6 8.3 8 0 0 8 8 8 7 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|386001975|ref|YP_005920274.1| - 1.3e-08 35.0 59.4 0.031 14.5 0.3 7.8 2 1 5 7 7 7 6 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|386001975|ref|YP_005920274.1| - 7.7e-07 29.9 65.4 0.078 13.8 1.0 8.1 4 1 5 9 9 9 6 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|386001975|ref|YP_005920274.1| - 0.0014 18.7 0.5 0.0014 18.7 0.5 6.3 3 2 4 7 7 7 2 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S FmdE PF02663.14 gi|386001976|ref|YP_005920275.1| - 9.8e-25 87.1 0.0 1.2e-24 86.8 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-ribbon_3 PF13248.6 gi|386001976|ref|YP_005920275.1| - 0.035 13.5 1.6 0.064 12.7 1.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|386001976|ref|YP_005920275.1| - 0.041 13.9 0.2 0.071 13.1 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GATase PF00117.28 gi|386001977|ref|YP_005920276.1| - 1e-18 67.8 0.0 1.3e-18 67.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|386001977|ref|YP_005920276.1| - 4.3e-08 33.2 0.2 2.1e-06 27.6 0.2 2.1 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 gi|386001977|ref|YP_005920276.1| - 0.052 13.1 0.0 0.077 12.6 0.0 1.3 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.6 gi|386001977|ref|YP_005920276.1| - 0.075 12.1 0.0 2.1 7.3 0.0 2.4 3 0 0 3 3 3 0 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|386001977|ref|YP_005920276.1| - 0.076 12.8 0.0 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 SNO glutamine amidotransferase family Diphthami_syn_2 PF01902.17 gi|386001978|ref|YP_005920277.1| - 2.1e-65 220.3 0.0 2.3e-65 220.1 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase AMP-binding PF00501.28 gi|386001979|ref|YP_005920278.1| - 3e-72 243.5 0.0 3.7e-72 243.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|386001979|ref|YP_005920278.1| - 5e-24 85.1 1.4 1.2e-23 83.8 1.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Hpr_kinase_C PF07475.12 gi|386001980|ref|YP_005920279.1| - 1.7e-06 27.7 0.0 1.1e-05 25.0 0.0 2.1 1 1 0 1 1 1 1 HPr Serine kinase C-terminal domain PEPCK_ATP PF01293.20 gi|386001980|ref|YP_005920279.1| - 0.00064 18.5 0.0 0.00078 18.2 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_33 PF13671.6 gi|386001980|ref|YP_005920279.1| - 0.0085 16.3 0.0 0.028 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|386001980|ref|YP_005920279.1| - 0.055 13.7 0.0 0.098 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|386001980|ref|YP_005920279.1| - 0.14 12.1 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|386001980|ref|YP_005920279.1| - 0.16 11.6 0.0 4.7 6.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain DrsE PF02635.15 gi|386001981|ref|YP_005920280.1| - 4.5e-12 46.4 0.0 5.2e-12 46.2 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Hydrolase PF00702.26 gi|386001982|ref|YP_005920281.1| - 3.6e-12 47.0 0.0 1e-11 45.6 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|386001982|ref|YP_005920281.1| - 0.049 14.0 0.0 0.077 13.4 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|386001982|ref|YP_005920281.1| - 0.055 13.2 0.0 0.32 10.7 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase HTH_IclR PF09339.10 gi|386001983|ref|YP_005920282.1| - 0.0066 16.2 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|386001983|ref|YP_005920282.1| - 0.014 14.9 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|386001983|ref|YP_005920282.1| - 0.027 14.3 0.0 0.071 13.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DASH_Dad4 PF08650.10 gi|386001983|ref|YP_005920282.1| - 0.045 13.7 0.0 0.13 12.2 0.0 1.8 1 0 0 1 1 1 0 DASH complex subunit Dad4 MarR_2 PF12802.7 gi|386001983|ref|YP_005920282.1| - 0.06 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 MarR family MbeD_MobD PF04899.12 gi|386001983|ref|YP_005920282.1| - 0.067 13.3 0.4 0.31 11.2 0.4 1.9 1 1 0 1 1 1 0 MbeD/MobD like Hydrolase_6 PF13344.6 gi|386001984|ref|YP_005920283.1| - 1.2e-21 76.7 0.0 2.2e-21 75.9 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|386001984|ref|YP_005920283.1| - 7.6e-21 74.0 0.6 1.5e-19 69.8 0.0 2.4 2 1 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|386001984|ref|YP_005920283.1| - 4e-13 50.2 2.0 2.1e-09 38.0 1.9 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|386001984|ref|YP_005920283.1| - 2.6e-11 43.9 0.1 9.9e-08 32.3 0.0 2.5 3 0 0 3 3 3 2 Haloacid dehalogenase-like hydrolase Peptidase_M23 PF01551.22 gi|386001985|ref|YP_005920284.1| - 5.6e-09 36.1 0.0 7.6e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M23 DUF2284 PF10050.9 gi|386001986|ref|YP_005920285.1| - 5e-51 172.7 0.0 5.7e-51 172.5 0.0 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) HTH_3 PF01381.22 gi|386001988|ref|YP_005920287.1| - 1.8e-09 37.5 0.4 4.4e-09 36.3 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|386001988|ref|YP_005920287.1| - 0.0087 16.4 0.8 0.046 14.1 0.0 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain PrpR_N PF06506.11 gi|386001988|ref|YP_005920287.1| - 0.02 14.5 0.5 0.03 13.9 0.5 1.3 1 0 0 1 1 1 0 Propionate catabolism activator ALIX_LYPXL_bnd PF13949.6 gi|386001988|ref|YP_005920287.1| - 0.035 13.4 0.1 0.048 13.0 0.1 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV HTH_26 PF13443.6 gi|386001988|ref|YP_005920287.1| - 0.068 13.6 0.0 0.16 12.4 0.0 1.7 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Mg_chelatase_C PF13335.6 gi|386001988|ref|YP_005920287.1| - 0.11 13.2 1.5 0.72 10.5 0.1 2.5 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI C-terminal DUF3368 PF11848.8 gi|386001988|ref|YP_005920287.1| - 0.12 12.2 0.2 0.33 10.8 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) Imm8 PF15586.6 gi|386001988|ref|YP_005920287.1| - 0.13 12.3 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 8 HTH_psq PF05225.16 gi|386001988|ref|YP_005920287.1| - 0.3 10.9 3.2 0.82 9.5 0.0 2.9 3 0 0 3 3 3 0 helix-turn-helix, Psq domain NMT1_2 PF13379.6 gi|386001989|ref|YP_005920288.1| - 5.8e-31 108.1 0.1 8.7e-31 107.5 0.1 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|386001989|ref|YP_005920288.1| - 2e-13 50.8 0.0 2.6e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|386001989|ref|YP_005920288.1| - 0.00017 21.2 0.0 0.00024 20.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_3 PF16868.5 gi|386001989|ref|YP_005920288.1| - 0.00028 20.4 0.0 0.073 12.5 0.0 2.7 2 1 1 3 3 3 2 NMT1-like family BPD_transp_1 PF00528.22 gi|386001990|ref|YP_005920289.1| - 1.6e-20 73.6 16.7 2.7e-20 72.9 16.7 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component YbjQ_1 PF01906.17 gi|386001991|ref|YP_005920290.1| - 8.1e-40 135.7 0.4 8.9e-40 135.5 0.4 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding GTP_EFTU_D2 PF03144.25 gi|386001992|ref|YP_005920291.1| - 2.1e-11 44.0 0.1 8.8e-11 42.0 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|386001992|ref|YP_005920291.1| - 0.0014 18.4 0.0 0.0029 17.5 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 tRNA-Thr_ED PF08915.11 gi|386001993|ref|YP_005920292.1| - 6.9e-49 165.4 0.0 1.5e-48 164.4 0.0 1.6 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|386001993|ref|YP_005920292.1| - 8.2e-17 61.1 4.3 1.1e-16 60.8 0.3 2.7 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|386001993|ref|YP_005920292.1| - 2.1e-14 53.9 0.3 4e-14 53.0 0.3 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) NosD PF05048.13 gi|386001994|ref|YP_005920293.1| - 2.7e-37 128.3 15.8 4.6e-37 127.6 15.8 1.3 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386001994|ref|YP_005920293.1| - 2.8e-22 79.2 34.1 3.6e-13 49.6 14.7 2.2 1 1 1 2 2 2 2 Right handed beta helix region Acetyltransf_1 PF00583.25 gi|386001997|ref|YP_005920296.1| - 7.6e-17 61.6 0.1 9.1e-17 61.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|386001997|ref|YP_005920296.1| - 2.1e-12 47.1 0.0 2.9e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|386001997|ref|YP_005920296.1| - 5e-12 46.1 0.1 7.4e-12 45.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|386001997|ref|YP_005920296.1| - 1.4e-06 28.2 0.1 1.9e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|386001997|ref|YP_005920296.1| - 2.7e-06 27.5 0.0 4.4e-05 23.6 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|386001997|ref|YP_005920296.1| - 8.7e-06 26.5 0.0 9.9e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|386001997|ref|YP_005920296.1| - 0.0028 17.8 0.0 0.0048 17.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|386001997|ref|YP_005920296.1| - 0.015 15.0 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|386001997|ref|YP_005920296.1| - 0.029 14.1 0.1 0.036 13.8 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ ChiC PF06483.11 gi|386001998|ref|YP_005920297.1| - 0.13 12.2 0.0 19 5.1 0.0 2.4 1 1 1 2 2 2 0 Chitinase C Lactamase_B PF00753.27 gi|386001999|ref|YP_005920298.1| - 5.9e-21 75.4 1.1 1.7e-20 73.9 1.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|386001999|ref|YP_005920298.1| - 2e-05 24.2 0.0 3.1e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RTC PF01137.21 gi|386002000|ref|YP_005920299.1| - 4e-75 251.8 0.0 4.8e-75 251.6 0.0 1.1 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|386002000|ref|YP_005920299.1| - 1.1e-13 51.6 0.7 2.1e-13 50.6 0.7 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain RNA_pol_L_2 PF13656.6 gi|386002001|ref|YP_005920300.1| - 2.4e-15 56.1 0.0 2.9e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|386002001|ref|YP_005920300.1| - 0.013 14.9 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain ECR1_N PF14382.6 gi|386002002|ref|YP_005920301.1| - 5e-12 45.4 0.3 8.6e-12 44.7 0.3 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|386002002|ref|YP_005920301.1| - 0.0034 18.0 0.2 0.0069 17.0 0.1 1.6 2 0 0 2 2 2 1 Exosome component EXOSC1/CSL4 DZR PF12773.7 gi|386002002|ref|YP_005920301.1| - 0.017 15.1 0.4 0.028 14.4 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF3039 PF11238.8 gi|386002002|ref|YP_005920301.1| - 0.029 14.1 1.0 0.053 13.3 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) Nudix_N_2 PF14803.6 gi|386002002|ref|YP_005920301.1| - 0.062 13.2 2.3 0.3 11.0 2.3 2.0 1 1 0 1 1 1 0 Nudix N-terminal S1 PF00575.23 gi|386002002|ref|YP_005920301.1| - 0.11 12.9 0.4 4.9 7.6 0.0 2.4 3 0 0 3 3 3 0 S1 RNA binding domain HypA PF01155.19 gi|386002002|ref|YP_005920301.1| - 0.23 11.5 1.2 0.58 10.2 0.9 1.7 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|386002002|ref|YP_005920301.1| - 0.45 10.2 4.7 2.5 7.8 4.7 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain MTS PF05175.14 gi|386002003|ref|YP_005920302.1| - 3.5e-13 49.5 0.0 4.8e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|386002003|ref|YP_005920302.1| - 4e-09 36.3 0.1 5e-09 36.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|386002003|ref|YP_005920302.1| - 1.3e-08 35.4 0.1 1.9e-08 34.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386002003|ref|YP_005920302.1| - 2.2e-08 34.0 0.0 2.6e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|386002003|ref|YP_005920302.1| - 5.8e-07 29.4 0.4 5.6e-06 26.2 0.4 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|386002003|ref|YP_005920302.1| - 3.2e-06 27.7 0.1 7.4e-06 26.5 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386002003|ref|YP_005920302.1| - 0.0033 17.3 0.0 0.0036 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|386002003|ref|YP_005920302.1| - 0.01 15.5 0.0 0.013 15.1 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|386002003|ref|YP_005920302.1| - 0.014 15.1 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|386002003|ref|YP_005920302.1| - 0.014 15.4 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002003|ref|YP_005920302.1| - 0.024 15.4 0.0 0.035 14.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|386002003|ref|YP_005920302.1| - 0.025 14.2 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.18 gi|386002003|ref|YP_005920302.1| - 0.098 12.4 0.0 0.24 11.1 0.0 1.6 2 0 0 2 2 2 0 DNA methylase PCMT PF01135.19 gi|386002003|ref|YP_005920302.1| - 0.19 11.4 0.0 0.25 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TPR_12 PF13424.6 gi|386002004|ref|YP_005920303.1| - 1.5e-42 143.7 14.8 1.9e-12 47.3 0.4 5.0 2 1 3 6 6 6 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386002004|ref|YP_005920303.1| - 2.8e-20 70.7 13.2 0.0013 18.7 1.1 7.5 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|386002004|ref|YP_005920303.1| - 1.6e-18 65.7 9.8 5.1e-05 22.9 0.0 6.6 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386002004|ref|YP_005920303.1| - 3.2e-18 64.4 12.4 0.0022 17.9 0.2 7.3 7 0 0 7 7 7 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386002004|ref|YP_005920303.1| - 5.2e-14 51.6 11.6 0.013 15.4 0.8 6.0 6 0 0 6 6 5 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386002004|ref|YP_005920303.1| - 3.3e-13 48.7 14.6 0.013 15.7 0.0 7.1 8 0 0 8 8 7 4 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|386002004|ref|YP_005920303.1| - 4.9e-11 42.6 5.3 1.5e-08 34.4 0.5 2.7 1 1 0 2 2 2 2 MalT-like TPR region SNAP PF14938.6 gi|386002004|ref|YP_005920303.1| - 1e-09 38.3 0.1 9.2e-06 25.3 0.2 2.8 1 1 2 3 3 3 2 Soluble NSF attachment protein, SNAP TPR_11 PF13414.6 gi|386002004|ref|YP_005920303.1| - 1.6e-07 30.9 1.6 0.6 9.8 0.1 5.3 4 1 0 4 4 4 2 TPR repeat TPR_14 PF13428.6 gi|386002004|ref|YP_005920303.1| - 0.00054 20.6 21.7 9.6 7.3 0.1 8.0 6 2 2 8 8 6 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386002004|ref|YP_005920303.1| - 0.001 19.3 1.7 5.1 7.7 0.0 4.1 4 0 0 4 4 3 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|386002004|ref|YP_005920303.1| - 0.0016 18.5 2.1 0.013 15.6 0.9 2.9 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) TPR_4 PF07721.14 gi|386002004|ref|YP_005920303.1| - 0.0032 17.9 0.9 0.0032 17.9 0.9 5.5 5 0 0 5 5 4 1 Tetratricopeptide repeat RPN7 PF10602.9 gi|386002004|ref|YP_005920303.1| - 0.0098 15.6 0.2 0.45 10.2 0.1 2.7 1 1 2 3 3 3 1 26S proteasome subunit RPN7 Coat_F PF07875.12 gi|386002004|ref|YP_005920303.1| - 0.028 14.7 0.1 0.069 13.4 0.1 1.7 1 0 0 1 1 1 0 Coat F domain Rapsyn_N PF10579.9 gi|386002004|ref|YP_005920303.1| - 0.03 14.4 0.2 2.7 8.1 0.0 3.5 2 1 2 4 4 4 0 Rapsyn N-terminal myristoylation and linker region DUF627 PF04781.12 gi|386002004|ref|YP_005920303.1| - 0.084 12.9 0.2 1.2 9.2 0.2 2.8 2 2 1 3 3 3 0 Protein of unknown function (DUF627) Dpy-30 PF05186.13 gi|386002004|ref|YP_005920303.1| - 0.13 11.9 0.1 3.1 7.6 0.1 2.5 2 0 0 2 2 2 0 Dpy-30 motif TPR_6 PF13174.6 gi|386002004|ref|YP_005920303.1| - 0.77 10.5 4.7 58 4.6 0.1 5.5 6 0 0 6 6 4 0 Tetratricopeptide repeat PALP PF00291.25 gi|386002005|ref|YP_005920304.1| - 4.1e-82 275.9 6.4 5.6e-82 275.5 6.4 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|386002005|ref|YP_005920304.1| - 5.1e-06 26.2 0.1 1.5e-05 24.7 0.1 1.8 1 0 0 1 1 1 1 ACT domain FtsX PF02687.21 gi|386002006|ref|YP_005920305.1| - 1.5e-27 95.9 9.6 1.5e-16 60.6 1.2 4.7 5 1 1 6 6 6 2 FtsX-like permease family MacB_PCD PF12704.7 gi|386002006|ref|YP_005920305.1| - 5.2e-27 95.5 13.0 3.4e-14 53.7 0.4 2.7 3 0 0 3 3 3 2 MacB-like periplasmic core domain DUF2304 PF10066.9 gi|386002006|ref|YP_005920305.1| - 0.039 14.2 0.3 0.039 14.2 0.3 3.5 5 0 0 5 5 5 0 Uncharacterized conserved protein (DUF2304) DUF1805 PF08827.11 gi|386002007|ref|YP_005920306.1| - 5.6e-23 81.1 0.1 7e-23 80.7 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) NTP_transf_2 PF01909.23 gi|386002008|ref|YP_005920307.1| - 3.4e-06 27.2 0.1 4.1e-06 27.0 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|386002008|ref|YP_005920307.1| - 1.4e-05 25.1 0.0 1.8e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Pentapeptide_3 PF13576.6 gi|386002009|ref|YP_005920308.1| - 4.4e-13 49.2 14.9 1.4e-06 28.3 2.9 3.9 2 1 1 3 3 3 3 Pentapeptide repeats (9 copies) PGK PF00162.19 gi|386002010|ref|YP_005920309.1| - 3.8e-116 388.1 0.3 4.3e-116 388.0 0.3 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase SRP54_N PF02881.19 gi|386002010|ref|YP_005920309.1| - 0.017 15.3 0.2 0.048 13.9 0.2 1.7 1 0 0 1 1 1 0 SRP54-type protein, helical bundle domain TadZ_N PF16968.5 gi|386002010|ref|YP_005920309.1| - 0.036 13.8 0.0 0.094 12.4 0.0 1.7 1 0 0 1 1 1 0 Pilus assembly protein TadZ N-terminal DHH PF01368.20 gi|386002011|ref|YP_005920310.1| - 1.3e-10 41.5 0.0 2.2e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|386002011|ref|YP_005920310.1| - 9.3e-07 29.3 4.0 1.9e-06 28.3 4.0 1.6 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.18 gi|386002012|ref|YP_005920311.1| - 3.9e-54 181.9 1.8 1.9e-27 95.8 0.8 2.3 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|386002012|ref|YP_005920311.1| - 6.9e-23 80.3 0.7 2.4e-11 43.3 0.1 3.4 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|386002012|ref|YP_005920311.1| - 1.1e-09 38.6 0.6 2.6e-05 24.6 0.3 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|386002012|ref|YP_005920311.1| - 1.6e-07 31.7 0.6 0.00026 21.3 0.2 2.6 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|386002012|ref|YP_005920311.1| - 5.6e-07 29.1 1.1 0.015 14.6 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.15 gi|386002012|ref|YP_005920311.1| - 3.5e-06 27.3 0.3 0.0024 18.0 0.1 2.6 2 1 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.6 gi|386002012|ref|YP_005920311.1| - 3.9e-06 26.9 0.6 0.00034 20.6 0.4 2.3 2 0 0 2 2 2 1 NAD(P)H-binding Shikimate_DH PF01488.20 gi|386002012|ref|YP_005920311.1| - 4.9e-06 26.6 0.5 0.08 13.0 0.0 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_8 PF13450.6 gi|386002012|ref|YP_005920311.1| - 3.9e-05 23.8 0.0 0.3 11.4 0.0 2.8 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain F420_oxidored PF03807.17 gi|386002012|ref|YP_005920311.1| - 4.2e-05 24.0 1.1 1.5 9.4 0.0 4.3 3 2 1 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|386002012|ref|YP_005920311.1| - 6.1e-05 22.4 0.2 0.065 12.5 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.21 gi|386002012|ref|YP_005920311.1| - 0.00012 21.6 0.4 0.0059 16.1 0.2 2.2 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family UDPG_MGDP_dh_N PF03721.14 gi|386002012|ref|YP_005920311.1| - 0.00014 21.5 0.0 2.8 7.5 0.0 3.3 2 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.6 gi|386002012|ref|YP_005920311.1| - 0.00015 22.3 0.1 0.28 11.7 0.0 2.3 2 0 0 2 2 2 2 XdhC Rossmann domain ApbA PF02558.16 gi|386002012|ref|YP_005920311.1| - 0.00021 21.0 0.0 0.11 12.2 0.0 2.4 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|386002012|ref|YP_005920311.1| - 0.00031 21.2 0.2 1.2 9.8 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.13 gi|386002012|ref|YP_005920311.1| - 0.00048 19.8 0.4 0.015 14.9 0.3 2.2 2 0 0 2 2 2 1 NmrA-like family FAD_binding_3 PF01494.19 gi|386002012|ref|YP_005920311.1| - 0.00078 18.8 0.0 0.91 8.7 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain Rossmann-like PF10727.9 gi|386002012|ref|YP_005920311.1| - 0.001 18.9 0.0 1.2 9.0 0.0 3.0 2 1 0 2 2 2 1 Rossmann-like domain 3HCDH_N PF02737.18 gi|386002012|ref|YP_005920311.1| - 0.0015 18.4 0.1 0.69 9.8 0.0 2.8 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1188 PF06690.11 gi|386002012|ref|YP_005920311.1| - 0.0028 17.2 0.7 1 8.8 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF1188) 2-Hacid_dh_C PF02826.19 gi|386002012|ref|YP_005920311.1| - 0.015 14.6 0.1 3.1 7.1 0.0 2.9 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|386002012|ref|YP_005920311.1| - 0.019 14.6 0.0 2.3 7.7 0.0 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase ADH_zinc_N PF00107.26 gi|386002012|ref|YP_005920311.1| - 0.022 14.7 0.4 0.18 11.8 0.0 2.5 2 0 0 2 2 2 0 Zinc-binding dehydrogenase ThiF PF00899.21 gi|386002012|ref|YP_005920311.1| - 0.086 12.2 0.5 4.9 6.4 0.0 2.9 3 0 0 3 3 3 0 ThiF family UDG PF03167.19 gi|386002013|ref|YP_005920312.1| - 5.5e-44 149.9 0.0 6.8e-44 149.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily NTP_transferase PF00483.23 gi|386002015|ref|YP_005920314.1| - 1.1e-34 120.2 0.0 1.6e-34 119.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|386002015|ref|YP_005920314.1| - 5.5e-10 38.6 5.2 2.1e-05 24.1 1.5 3.6 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|386002015|ref|YP_005920314.1| - 0.035 14.5 0.0 0.07 13.5 0.0 1.6 1 0 0 1 1 1 0 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|386002015|ref|YP_005920314.1| - 0.098 12.4 2.5 1.6 8.6 0.1 3.3 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase Iso_dh PF00180.20 gi|386002016|ref|YP_005920315.1| - 8.9e-67 225.7 0.0 1.4e-66 225.0 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase RIO1 PF01163.22 gi|386002017|ref|YP_005920316.1| - 4.4e-39 134.0 0.0 6.4e-39 133.5 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|386002017|ref|YP_005920316.1| - 8.2e-17 61.2 0.0 1.7e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal Kdo PF06293.14 gi|386002017|ref|YP_005920316.1| - 7.7e-06 25.4 0.1 0.00017 21.0 0.1 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|386002017|ref|YP_005920316.1| - 2.6e-05 24.3 4.1 0.00023 21.2 0.0 2.5 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|386002017|ref|YP_005920316.1| - 0.011 15.2 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 Protein kinase domain MarR_2 PF12802.7 gi|386002017|ref|YP_005920316.1| - 0.07 13.0 0.2 0.22 11.4 0.2 1.9 1 0 0 1 1 1 0 MarR family Pkinase_Tyr PF07714.17 gi|386002017|ref|YP_005920316.1| - 0.087 12.1 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein tyrosine kinase Choline_kinase PF01633.20 gi|386002017|ref|YP_005920316.1| - 0.15 11.6 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 Choline/ethanolamine kinase DUF460 PF04312.13 gi|386002018|ref|YP_005920317.1| - 1.4e-46 157.7 0.0 4e-46 156.2 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Fez1 PF06818.15 gi|386002018|ref|YP_005920317.1| - 0.00027 21.4 13.1 0.0022 18.5 0.5 2.6 2 1 1 3 3 3 2 Fez1 acVLRF1 PF18859.1 gi|386002018|ref|YP_005920317.1| - 0.00073 19.8 1.7 0.00073 19.8 1.7 3.3 2 2 1 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor Lzipper-MIP1 PF14389.6 gi|386002018|ref|YP_005920317.1| - 0.14 12.5 11.1 1.4 9.3 2.1 2.6 1 1 1 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 Spc29 PF17082.5 gi|386002018|ref|YP_005920317.1| - 3.3 7.5 14.0 0.54 10.1 2.5 2.3 1 1 1 2 2 2 0 Spindle Pole Component 29 DivIC PF04977.15 gi|386002018|ref|YP_005920317.1| - 7.3 6.4 19.8 0.56 10.0 5.1 3.0 2 0 0 2 2 2 0 Septum formation initiator NadA PF02445.16 gi|386002019|ref|YP_005920318.1| - 3.6e-120 400.7 0.0 4e-120 400.5 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein HI0933_like PF03486.14 gi|386002022|ref|YP_005920321.1| - 1.8e-114 382.6 0.0 2.1e-114 382.4 0.0 1.0 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|386002022|ref|YP_005920321.1| - 2.2e-10 40.3 0.0 0.00044 19.6 0.1 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|386002022|ref|YP_005920321.1| - 2.8e-08 33.3 0.5 1.2e-06 27.9 0.4 2.3 2 1 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|386002022|ref|YP_005920321.1| - 1.5e-07 31.4 0.9 0.0063 16.1 0.1 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|386002022|ref|YP_005920321.1| - 6.9e-07 29.4 0.1 2.4e-06 27.7 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|386002022|ref|YP_005920321.1| - 1.7e-06 27.5 0.0 2.9e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 gi|386002022|ref|YP_005920321.1| - 6.6e-06 25.6 0.1 2.7e-05 23.6 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|386002022|ref|YP_005920321.1| - 1.3e-05 24.5 0.7 0.12 11.5 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|386002022|ref|YP_005920321.1| - 0.0026 16.9 0.9 0.01 14.9 0.2 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|386002022|ref|YP_005920321.1| - 0.0039 17.7 0.2 3.9 8.1 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|386002022|ref|YP_005920321.1| - 0.0046 16.4 0.1 0.0076 15.6 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|386002022|ref|YP_005920321.1| - 0.15 12.0 0.0 0.7 9.9 0.0 2.1 1 1 0 1 1 1 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|386002022|ref|YP_005920321.1| - 0.21 10.8 0.3 0.46 9.7 0.3 1.6 1 1 0 1 1 1 0 FAD binding domain Abhydrolase_1 PF00561.20 gi|386002023|ref|YP_005920322.1| - 2.9e-10 40.2 0.0 5.5e-09 36.1 0.0 2.5 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|386002023|ref|YP_005920322.1| - 4e-07 30.9 2.6 5.7e-07 30.4 2.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|386002023|ref|YP_005920322.1| - 0.0019 17.5 0.0 0.016 14.5 0.0 2.2 2 1 0 2 2 2 1 Serine aminopeptidase, S33 DLH PF01738.18 gi|386002023|ref|YP_005920322.1| - 0.055 13.0 0.0 0.77 9.3 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family Esterase PF00756.20 gi|386002023|ref|YP_005920322.1| - 0.18 11.4 0.0 0.27 10.8 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Glyoxalase_6 PF18029.1 gi|386002024|ref|YP_005920323.1| - 2.4e-08 34.7 0.0 3.4e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|386002024|ref|YP_005920323.1| - 2.7e-08 34.1 0.0 1.2e-06 28.8 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|386002024|ref|YP_005920323.1| - 0.0052 17.1 0.0 0.082 13.2 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF4790 PF16037.5 gi|386002025|ref|YP_005920324.1| - 0.069 13.6 0.1 0.086 13.3 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4790) Cupin_2 PF07883.11 gi|386002026|ref|YP_005920325.1| - 8.4e-14 51.0 0.1 1.3e-13 50.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|386002026|ref|YP_005920325.1| - 8.1e-05 22.6 0.0 9.9e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|386002026|ref|YP_005920325.1| - 9.8e-05 22.3 0.1 0.00012 22.0 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|386002026|ref|YP_005920325.1| - 0.0007 19.2 0.0 0.00092 18.8 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|386002026|ref|YP_005920325.1| - 0.0013 18.4 0.0 0.0024 17.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.12 gi|386002026|ref|YP_005920325.1| - 0.0016 18.6 0.0 0.0018 18.4 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase AraC_binding_2 PF14525.6 gi|386002026|ref|YP_005920325.1| - 0.0039 16.9 0.0 0.0051 16.5 0.0 1.2 1 0 0 1 1 1 1 AraC-binding-like domain EutQ PF06249.12 gi|386002026|ref|YP_005920325.1| - 0.087 12.6 0.0 0.096 12.4 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ CENP-C_C PF11699.8 gi|386002026|ref|YP_005920325.1| - 0.095 12.9 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 Mif2/CENP-C like dCMP_cyt_deam_1 PF00383.23 gi|386002027|ref|YP_005920326.1| - 1.5e-20 73.0 0.0 1.8e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|386002027|ref|YP_005920326.1| - 2.5e-19 69.4 0.0 3.2e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|386002027|ref|YP_005920326.1| - 0.00069 19.7 0.1 0.0084 16.2 0.1 2.1 1 1 0 1 1 1 1 Bd3614-like deaminase SNAD4 PF18750.1 gi|386002027|ref|YP_005920326.1| - 0.017 15.2 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 APOBEC_N PF08210.11 gi|386002027|ref|YP_005920326.1| - 0.088 12.7 0.0 0.5 10.2 0.0 1.8 1 1 1 2 2 2 0 APOBEC-like N-terminal domain ComZ PF10815.8 gi|386002027|ref|YP_005920326.1| - 0.099 12.7 0.1 2.9 8.0 0.0 2.3 2 0 0 2 2 2 0 ComZ DUF2284 PF10050.9 gi|386002027|ref|YP_005920326.1| - 0.16 11.7 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) Sacchrp_dh_NADP PF03435.18 gi|386002028|ref|YP_005920327.1| - 0.0049 17.1 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TPR_12 PF13424.6 gi|386002029|ref|YP_005920328.1| - 4.4e-36 123.0 6.2 1.7e-18 66.7 0.3 3.7 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386002029|ref|YP_005920328.1| - 1.3e-26 91.7 5.7 3.9e-08 32.9 0.1 4.8 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386002029|ref|YP_005920328.1| - 2.2e-16 58.6 0.5 0.0014 18.6 0.1 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.28 gi|386002029|ref|YP_005920328.1| - 1.4e-15 56.3 0.1 9.2e-05 22.1 0.0 3.6 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386002029|ref|YP_005920328.1| - 3.8e-11 42.3 0.0 0.044 14.0 0.0 3.6 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386002029|ref|YP_005920328.1| - 5.5e-11 41.7 0.5 0.0089 16.0 0.0 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386002029|ref|YP_005920328.1| - 6.7e-09 35.3 0.1 0.022 14.4 0.0 3.8 3 1 0 4 4 4 3 TPR repeat TPR_MalT PF17874.1 gi|386002029|ref|YP_005920328.1| - 4e-08 33.0 0.0 6.5e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 MalT-like TPR region TPR_14 PF13428.6 gi|386002029|ref|YP_005920328.1| - 2.8e-07 30.8 15.8 0.31 12.0 0.5 5.9 3 2 2 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386002029|ref|YP_005920328.1| - 8.6e-06 25.8 7.7 0.015 15.5 0.2 4.1 2 2 1 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386002029|ref|YP_005920328.1| - 3.1e-05 24.5 15.0 0.0021 18.7 3.5 4.5 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386002029|ref|YP_005920328.1| - 8.6e-05 22.9 0.2 4.8 8.0 0.0 4.3 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386002029|ref|YP_005920328.1| - 0.00045 20.4 0.2 9.5 6.9 0.0 3.8 3 0 0 3 3 3 0 Tetratricopeptide repeat AAA_16 PF13191.6 gi|386002029|ref|YP_005920328.1| - 0.0018 18.7 0.1 0.0061 16.9 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain TPR_21 PF09976.9 gi|386002029|ref|YP_005920328.1| - 0.0041 16.8 0.2 1.7 8.3 0.0 3.2 1 1 2 3 3 3 1 Tetratricopeptide repeat-like domain TPR_4 PF07721.14 gi|386002029|ref|YP_005920328.1| - 0.02 15.5 17.0 0.22 12.3 0.1 5.5 5 0 0 5 5 4 0 Tetratricopeptide repeat AAA_22 PF13401.6 gi|386002029|ref|YP_005920328.1| - 0.021 15.1 0.0 0.19 12.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain TPR_19 PF14559.6 gi|386002029|ref|YP_005920328.1| - 0.057 13.9 0.3 0.057 13.9 0.3 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat RsgA_GTPase PF03193.16 gi|386002029|ref|YP_005920328.1| - 0.24 11.3 0.0 0.49 10.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase DUF2379 PF09543.10 gi|386002029|ref|YP_005920328.1| - 0.91 9.7 3.5 51 4.1 0.0 3.9 2 1 1 4 4 4 0 Protein of unknown function (DUF2379) SNase PF00565.17 gi|386002030|ref|YP_005920329.1| - 1.2e-09 38.6 0.0 1.5e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Rubrerythrin PF02915.17 gi|386002031|ref|YP_005920330.1| - 3.9e-08 33.8 3.1 5.7e-08 33.2 3.1 1.2 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|386002031|ref|YP_005920330.1| - 0.00033 21.0 0.7 0.00043 20.6 0.4 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) Mn_catalase PF05067.12 gi|386002031|ref|YP_005920330.1| - 0.013 14.5 0.3 0.015 14.3 0.3 1.1 1 0 0 1 1 1 0 Manganese containing catalase Ferritin PF00210.24 gi|386002031|ref|YP_005920330.1| - 0.12 12.4 4.7 0.26 11.2 4.7 1.6 1 1 0 1 1 1 0 Ferritin-like domain UPF0149 PF03695.13 gi|386002031|ref|YP_005920330.1| - 0.97 9.7 5.6 13 6.0 2.4 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0149) Vut_1 PF02592.15 gi|386002032|ref|YP_005920331.1| - 1.4e-54 184.5 5.9 1.4e-54 184.5 5.9 1.4 2 0 0 2 2 2 1 Putative vitamin uptake transporter MRAP PF15183.6 gi|386002032|ref|YP_005920331.1| - 0.0035 17.3 0.1 0.0091 15.9 0.1 1.7 1 0 0 1 1 1 1 Melanocortin-2 receptor accessory protein family Rep_fac_C PF08542.11 gi|386002033|ref|YP_005920332.1| - 3.3e-19 69.1 0.1 8.7e-19 67.7 0.1 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|386002033|ref|YP_005920332.1| - 3.7e-16 59.7 0.0 3.4e-15 56.6 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|386002033|ref|YP_005920332.1| - 5.7e-13 49.0 0.0 3.4e-08 33.4 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|386002033|ref|YP_005920332.1| - 1.5e-08 34.6 0.0 1.2e-07 31.6 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|386002033|ref|YP_005920332.1| - 3.6e-07 30.7 0.8 0.00012 22.5 0.0 3.0 2 1 1 3 3 3 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|386002033|ref|YP_005920332.1| - 5.9e-05 23.3 0.1 0.00012 22.3 0.1 1.6 1 0 0 1 1 1 1 AAA C-terminal domain Mg_chelatase PF01078.21 gi|386002033|ref|YP_005920332.1| - 0.0001 21.8 0.0 0.065 12.6 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|386002033|ref|YP_005920332.1| - 0.0004 20.3 0.0 0.00087 19.3 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|386002033|ref|YP_005920332.1| - 0.00047 20.2 0.0 0.0012 18.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|386002033|ref|YP_005920332.1| - 0.00076 19.5 0.0 0.01 15.8 0.0 2.1 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|386002033|ref|YP_005920332.1| - 0.0015 18.3 0.1 0.039 13.7 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|386002033|ref|YP_005920332.1| - 0.0025 17.1 0.0 0.023 13.9 0.0 2.2 1 1 1 2 2 2 1 TIP49 P-loop domain AAA_3 PF07726.11 gi|386002033|ref|YP_005920332.1| - 0.003 17.4 0.0 0.0062 16.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|386002033|ref|YP_005920332.1| - 0.0044 17.3 0.1 3.1 8.1 0.0 2.6 1 1 1 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|386002033|ref|YP_005920332.1| - 0.0066 16.2 0.0 1.3 8.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|386002033|ref|YP_005920332.1| - 0.0089 15.6 0.0 0.02 14.4 0.0 1.6 2 0 0 2 2 2 1 P-loop containing dynein motor region SNF2_N PF00176.23 gi|386002033|ref|YP_005920332.1| - 0.0099 14.6 0.0 0.079 11.7 0.0 2.0 1 1 0 2 2 2 1 SNF2 family N-terminal domain TPR_16 PF13432.6 gi|386002033|ref|YP_005920332.1| - 0.032 14.9 0.0 4.1 8.1 0.1 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_2 PF07724.14 gi|386002033|ref|YP_005920332.1| - 0.042 14.0 0.0 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_24 PF13479.6 gi|386002033|ref|YP_005920332.1| - 0.043 13.5 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|386002033|ref|YP_005920332.1| - 0.046 13.3 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|386002033|ref|YP_005920332.1| - 0.06 13.3 0.6 0.89 9.6 0.1 2.7 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) TPR_19 PF14559.6 gi|386002033|ref|YP_005920332.1| - 0.061 13.8 0.8 16 6.1 0.0 2.9 3 0 0 3 3 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386002033|ref|YP_005920332.1| - 0.074 13.9 0.4 2.8 9.0 0.1 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_11 PF13086.6 gi|386002033|ref|YP_005920332.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain TPR_9 PF13371.6 gi|386002033|ref|YP_005920332.1| - 0.12 12.5 0.5 0.35 11.0 0.1 2.0 2 0 0 2 2 1 0 Tetratricopeptide repeat RNA_helicase PF00910.22 gi|386002033|ref|YP_005920332.1| - 0.17 12.3 0.0 0.37 11.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF333 PF03891.15 gi|386002034|ref|YP_005920333.1| - 1.3e-12 47.7 12.2 1.3e-05 25.3 0.9 4.3 3 1 0 3 3 3 2 Domain of unknown function (DUF333) DUF4244 PF14029.6 gi|386002034|ref|YP_005920333.1| - 4.1 6.9 6.6 3.3 7.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) Aldedh PF00171.22 gi|386002035|ref|YP_005920334.1| - 1.4e-166 554.6 0.0 1.6e-166 554.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|386002035|ref|YP_005920334.1| - 0.042 13.3 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) Epimerase PF01370.21 gi|386002036|ref|YP_005920335.1| - 7.2e-46 156.6 0.0 8.6e-46 156.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|386002036|ref|YP_005920335.1| - 2.3e-44 152.2 0.0 4.9e-44 151.1 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|386002036|ref|YP_005920335.1| - 1.7e-19 69.9 0.0 2.3e-19 69.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|386002036|ref|YP_005920335.1| - 8.4e-17 61.2 0.0 9.7e-16 57.7 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|386002036|ref|YP_005920335.1| - 2.1e-13 50.6 0.0 1.5e-12 47.8 0.0 2.0 2 0 0 2 2 2 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|386002036|ref|YP_005920335.1| - 2e-11 43.5 0.0 3.1e-11 42.9 0.0 1.2 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|386002036|ref|YP_005920335.1| - 2e-09 37.0 0.0 1.3e-07 31.0 0.0 2.8 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|386002036|ref|YP_005920335.1| - 0.0012 18.5 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|386002036|ref|YP_005920335.1| - 0.0012 18.4 0.2 0.022 14.2 0.0 2.5 2 1 0 2 2 2 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|386002036|ref|YP_005920335.1| - 0.0016 18.7 0.0 0.003 17.8 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ABM PF03992.16 gi|386002036|ref|YP_005920335.1| - 0.016 15.3 0.0 0.031 14.4 0.0 1.4 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase TrkA_N PF02254.18 gi|386002036|ref|YP_005920335.1| - 0.065 13.5 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain E3_UFM1_ligase PF09743.9 gi|386002036|ref|YP_005920335.1| - 0.094 12.3 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 E3 UFM1-protein ligase 1 tify PF06200.14 gi|386002036|ref|YP_005920335.1| - 0.12 11.8 0.2 12 5.3 0.0 2.3 2 0 0 2 2 2 0 tify domain RHH_1 PF01402.21 gi|386002037|ref|YP_005920336.1| - 2.5e-11 43.1 0.3 5.3e-11 42.0 0.3 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|386002037|ref|YP_005920336.1| - 0.00033 20.6 0.1 0.0007 19.5 0.1 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain BrnA_antitoxin PF14384.6 gi|386002037|ref|YP_005920336.1| - 0.0073 16.8 0.3 0.021 15.3 0.0 1.8 2 0 0 2 2 2 1 BrnA antitoxin of type II toxin-antitoxin system DUF3181 PF11378.8 gi|386002037|ref|YP_005920336.1| - 0.02 15.2 0.0 0.038 14.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3181) HTH_19 PF12844.7 gi|386002037|ref|YP_005920336.1| - 0.053 13.5 0.4 0.18 11.9 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain FmdE PF02663.14 gi|386002038|ref|YP_005920337.1| - 5.2e-22 78.3 0.0 6.5e-22 78.0 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ydhR PF08803.11 gi|386002039|ref|YP_005920338.1| - 4.9e-09 36.0 0.0 5.4e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Putative mono-oxygenase ydhR ABM PF03992.16 gi|386002039|ref|YP_005920338.1| - 0.011 15.8 0.2 0.015 15.4 0.2 1.2 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase Chitin_synth_1 PF01644.17 gi|386002039|ref|YP_005920338.1| - 0.097 12.6 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Chitin synthase Fer4 PF00037.27 gi|386002040|ref|YP_005920339.1| - 3.4e-11 42.5 9.2 5.3e-08 32.4 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|386002040|ref|YP_005920339.1| - 8.5e-09 35.4 4.5 2.6e-05 24.3 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386002040|ref|YP_005920339.1| - 5.5e-08 33.3 11.7 4.4e-07 30.4 11.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002040|ref|YP_005920339.1| - 2e-07 30.8 12.6 3.6e-06 26.8 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386002040|ref|YP_005920339.1| - 4.3e-07 29.6 13.1 4.2e-06 26.5 3.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|386002040|ref|YP_005920339.1| - 2.2e-06 27.8 9.1 5.6e-06 26.4 9.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386002040|ref|YP_005920339.1| - 1.3e-05 25.8 4.7 0.0021 18.8 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|386002040|ref|YP_005920339.1| - 6.5e-05 23.8 5.9 0.011 16.6 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|386002040|ref|YP_005920339.1| - 0.00013 22.0 13.3 0.00018 21.5 10.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386002040|ref|YP_005920339.1| - 0.0006 20.2 8.8 0.0073 16.7 0.2 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386002040|ref|YP_005920339.1| - 0.00098 19.6 8.1 0.044 14.3 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386002040|ref|YP_005920339.1| - 0.0055 17.1 3.4 0.0055 17.1 3.4 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|386002040|ref|YP_005920339.1| - 0.019 15.8 10.5 0.84 10.5 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386002040|ref|YP_005920339.1| - 0.04 14.8 4.8 0.04 14.8 4.8 3.4 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|386002040|ref|YP_005920339.1| - 0.048 14.2 1.3 0.048 14.2 1.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CtsR_C PF17727.1 gi|386002040|ref|YP_005920339.1| - 0.16 12.1 0.0 7.9 6.7 0.0 3.2 4 0 0 4 4 4 0 CtsR C-terminal dimerization domain Peptidase_S55 PF05580.12 gi|386002041|ref|YP_005920340.1| - 0.12 12.3 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 SpoIVB peptidase S55 Peptidase_S29 PF02907.15 gi|386002041|ref|YP_005920340.1| - 0.13 12.0 0.1 0.88 9.3 0.0 2.0 1 1 0 2 2 2 0 Hepatitis C virus NS3 protease DUF2149 PF09919.9 gi|386002042|ref|YP_005920341.1| - 1.6e-32 111.6 0.3 2e-32 111.3 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) MotA_ExbB PF01618.16 gi|386002043|ref|YP_005920342.1| - 1.2e-10 41.2 0.0 1.9e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family LapA_dom PF06305.11 gi|386002043|ref|YP_005920342.1| - 0.082 12.7 1.2 0.62 9.9 0.5 2.3 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF2530 PF10745.9 gi|386002043|ref|YP_005920342.1| - 0.54 10.5 5.2 0.28 11.4 0.7 2.5 2 1 0 3 3 3 0 Protein of unknown function (DUF2530) DUF2162 PF09930.9 gi|386002044|ref|YP_005920343.1| - 1.8e-52 178.0 16.6 2e-52 177.9 16.6 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) DUF805 PF05656.14 gi|386002044|ref|YP_005920343.1| - 0.5 10.8 6.8 3.4 8.1 6.8 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF805) MARVEL PF01284.23 gi|386002044|ref|YP_005920343.1| - 6.2 6.8 17.4 0.077 13.0 6.4 2.2 2 1 0 2 2 2 0 Membrane-associating domain CobN-Mg_chel PF02514.16 gi|386002045|ref|YP_005920344.1| - 0 1098.1 0.0 0 1097.9 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase PQQ_3 PF13570.6 gi|386002046|ref|YP_005920345.1| - 1.6e-65 216.1 32.9 6e-10 39.3 0.1 9.3 8 1 1 9 9 9 9 PQQ-like domain PQQ_2 PF13360.6 gi|386002046|ref|YP_005920345.1| - 2.6e-48 164.7 10.4 2.2e-23 83.1 1.4 4.5 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|386002046|ref|YP_005920345.1| - 1.9e-40 134.9 14.1 5.2e-08 32.5 0.0 9.3 9 0 0 9 9 9 7 PQQ enzyme repeat DUF4430 PF14478.6 gi|386002046|ref|YP_005920345.1| - 0.0053 17.3 0.0 0.01 16.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4430) DUF4905 PF16248.5 gi|386002046|ref|YP_005920345.1| - 0.055 13.4 0.0 16 5.5 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4905) SUKH-4 PF14435.6 gi|386002046|ref|YP_005920345.1| - 0.19 11.8 5.1 5.4 7.0 0.1 4.4 2 2 3 5 5 5 0 SUKH-4 immunity protein PQQ_3 PF13570.6 gi|386002047|ref|YP_005920346.1| - 2e-44 149.0 24.6 1.7e-05 25.1 0.0 8.4 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|386002047|ref|YP_005920346.1| - 3.2e-39 134.9 8.1 5.3e-21 75.3 0.3 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|386002047|ref|YP_005920346.1| - 1.6e-23 81.4 7.6 0.0056 16.6 0.0 8.9 9 0 0 9 9 9 6 PQQ enzyme repeat Kelch_2 PF07646.15 gi|386002047|ref|YP_005920346.1| - 0.0009 19.1 0.3 2.6 8.1 0.0 4.2 4 0 0 4 4 4 2 Kelch motif DUF4905 PF16248.5 gi|386002047|ref|YP_005920346.1| - 0.11 12.3 0.8 37 4.3 0.0 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF4905) Kelch_1 PF01344.25 gi|386002047|ref|YP_005920346.1| - 0.22 11.1 7.3 6.6 6.4 0.0 4.3 4 0 0 4 4 4 0 Kelch motif PQQ_3 PF13570.6 gi|386002048|ref|YP_005920347.1| - 1e-38 130.9 27.7 5.4e-06 26.7 0.4 8.3 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|386002048|ref|YP_005920347.1| - 3.1e-38 131.7 4.2 8.1e-20 71.4 0.3 4.0 1 1 2 4 4 4 4 PQQ-like domain PQQ PF01011.21 gi|386002048|ref|YP_005920347.1| - 5.6e-17 60.8 15.3 8.8e-05 22.3 0.1 7.8 9 0 0 9 9 9 4 PQQ enzyme repeat Kelch_6 PF13964.6 gi|386002048|ref|YP_005920347.1| - 0.00099 19.3 2.4 0.87 10.0 0.0 4.7 4 0 0 4 4 4 1 Kelch motif SUKH-4 PF14435.6 gi|386002048|ref|YP_005920347.1| - 0.15 12.1 1.3 24 4.9 0.1 3.3 2 1 1 3 3 3 0 SUKH-4 immunity protein DUF11 PF01345.18 gi|386002049|ref|YP_005920348.1| - 1.7e-29 101.9 0.0 6.6e-06 26.3 0.0 5.6 4 1 0 4 4 4 4 Domain of unknown function DUF11 Prenyltrans PF00432.21 gi|386002049|ref|YP_005920348.1| - 1.1e-13 50.6 0.4 5.8e-06 25.9 0.0 4.3 4 0 0 4 4 4 3 Prenyltransferase and squalene oxidase repeat SQHop_cyclase_C PF13243.6 gi|386002049|ref|YP_005920348.1| - 1.6e-10 40.6 2.3 1.7e-05 24.1 2.7 2.9 2 1 1 3 3 3 3 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 gi|386002049|ref|YP_005920348.1| - 3.9e-08 32.7 0.0 0.0018 17.5 0.0 2.5 2 0 0 2 2 2 2 Squalene-hopene cyclase N-terminal domain Chlam_OMP6 PF03504.13 gi|386002049|ref|YP_005920348.1| - 6.1e-06 26.4 0.3 7.1 7.0 0.0 5.3 5 0 0 5 5 5 2 Chlamydia cysteine-rich outer membrane protein 6 CarboxypepD_reg PF13620.6 gi|386002049|ref|YP_005920348.1| - 3e-05 24.2 22.1 0.00085 19.6 0.1 5.7 5 0 0 5 5 5 3 Carboxypeptidase regulatory-like domain DUF4430 PF14478.6 gi|386002049|ref|YP_005920348.1| - 3.3e-05 24.4 0.0 0.67 10.6 0.0 3.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4430) PEGA PF08308.11 gi|386002049|ref|YP_005920348.1| - 0.0038 17.1 13.3 0.42 10.5 1.3 4.1 3 0 0 3 3 3 2 PEGA domain Top6b_C PF18000.1 gi|386002049|ref|YP_005920348.1| - 0.11 12.7 1.2 0.96 9.6 0.0 3.1 4 0 0 4 4 4 0 Type 2 DNA topoisomerase 6 subunit B C-terminal domain Fer4_19 PF06902.11 gi|386002050|ref|YP_005920349.1| - 9.7e-26 89.6 0.0 1.6e-25 88.9 0.0 1.4 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster zf-CDGSH PF09360.10 gi|386002050|ref|YP_005920349.1| - 1.9e-16 60.0 0.4 3.6e-16 59.1 0.4 1.5 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type Fer4_13 PF13370.6 gi|386002050|ref|YP_005920349.1| - 0.082 13.5 0.1 0.36 11.4 0.1 1.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|386002050|ref|YP_005920349.1| - 0.16 12.1 1.8 0.51 10.5 0.0 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain PBP_like_2 PF12849.7 gi|386002051|ref|YP_005920350.1| - 3.2e-21 76.2 0.0 4.3e-21 75.8 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|386002051|ref|YP_005920350.1| - 5.8e-09 36.0 0.0 1.1e-08 35.1 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|386002051|ref|YP_005920350.1| - 0.084 12.2 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 LysR substrate binding domain SBP_bac_1 PF01547.25 gi|386002051|ref|YP_005920350.1| - 0.11 12.4 0.0 12 5.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|386002052|ref|YP_005920351.1| - 1.1e-10 41.6 18.4 1.1e-10 41.6 18.4 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|386002053|ref|YP_005920352.1| - 7.7e-32 110.7 0.0 1e-31 110.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386002053|ref|YP_005920352.1| - 2.2e-09 37.6 0.0 0.00011 22.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|386002053|ref|YP_005920352.1| - 1.2e-05 25.6 0.1 9.4e-05 22.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|386002053|ref|YP_005920352.1| - 0.00072 20.0 0.9 0.0022 18.4 0.9 1.9 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|386002053|ref|YP_005920352.1| - 0.00098 18.6 0.0 0.048 13.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|386002053|ref|YP_005920352.1| - 0.0012 18.6 1.1 0.0097 15.6 0.9 2.2 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|386002053|ref|YP_005920352.1| - 0.0016 18.7 0.6 0.022 15.0 0.6 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.17 gi|386002053|ref|YP_005920352.1| - 0.0059 16.4 0.0 0.66 9.7 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_29 PF13555.6 gi|386002053|ref|YP_005920352.1| - 0.0076 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 gi|386002053|ref|YP_005920352.1| - 0.024 14.5 0.9 0.58 10.0 0.2 2.5 2 1 1 3 3 3 0 NACHT domain AAA_33 PF13671.6 gi|386002053|ref|YP_005920352.1| - 0.03 14.5 0.4 0.096 12.9 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|386002053|ref|YP_005920352.1| - 0.037 14.5 0.0 0.056 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|386002053|ref|YP_005920352.1| - 0.043 13.7 0.0 0.22 11.4 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|386002053|ref|YP_005920352.1| - 0.066 13.8 0.1 0.67 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|386002053|ref|YP_005920352.1| - 0.087 11.9 0.1 0.21 10.6 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|386002053|ref|YP_005920352.1| - 0.11 12.0 1.5 0.36 10.4 1.3 2.2 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|386002053|ref|YP_005920352.1| - 0.12 12.0 0.1 0.24 10.9 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DEAD PF00270.29 gi|386002053|ref|YP_005920352.1| - 0.18 11.6 0.0 0.37 10.5 0.0 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase Rad17 PF03215.15 gi|386002053|ref|YP_005920352.1| - 0.18 11.7 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain TsaE PF02367.17 gi|386002053|ref|YP_005920352.1| - 0.22 11.5 0.1 0.42 10.6 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|386002053|ref|YP_005920352.1| - 0.22 11.9 0.5 5.6 7.4 0.1 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Pentapeptide PF00805.22 gi|386002054|ref|YP_005920353.1| - 1.2e-68 226.2 32.9 9e-15 54.0 1.3 5.7 1 1 3 6 6 6 6 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|386002054|ref|YP_005920353.1| - 2.6e-29 101.2 0.0 1.6e-09 37.8 0.0 3.4 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|386002054|ref|YP_005920353.1| - 1.2e-24 86.2 0.0 4.8e-05 23.4 0.0 5.0 2 1 2 4 4 4 4 Pentapeptide repeats (9 copies) DUF5508 PF17621.2 gi|386002054|ref|YP_005920353.1| - 0.26 10.4 0.0 4.7 6.3 0.0 2.4 2 1 0 3 3 3 0 Family of unknown function (DUF5508) AI-2E_transport PF01594.16 gi|386002055|ref|YP_005920354.1| - 9.9e-37 126.8 40.2 4.6e-36 124.6 40.2 1.8 1 1 0 1 1 1 1 AI-2E family transporter DUF4834 PF16118.5 gi|386002055|ref|YP_005920354.1| - 0.15 13.0 0.1 0.15 13.0 0.1 2.7 4 0 0 4 4 4 0 Domain of unknown function (DUF4834) DUF1514 PF07438.11 gi|386002055|ref|YP_005920354.1| - 1.5 8.7 3.9 1 9.3 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1514) TMEM18 PF14770.6 gi|386002055|ref|YP_005920354.1| - 5.8 6.9 9.8 0.16 12.0 1.1 2.8 3 1 0 3 3 3 0 Transmembrane protein 18 TFX_C PF14601.6 gi|386002056|ref|YP_005920355.1| - 1.8e-27 95.1 0.0 2.8e-27 94.5 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|386002056|ref|YP_005920355.1| - 4.7e-07 29.2 2.4 1e-06 28.1 2.4 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|386002056|ref|YP_005920355.1| - 2.6e-06 27.0 1.2 9.2e-06 25.3 1.2 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.6 gi|386002056|ref|YP_005920355.1| - 3.6e-05 23.6 0.2 8.3e-05 22.5 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 gi|386002056|ref|YP_005920355.1| - 0.00017 21.1 0.2 0.00027 20.4 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_31 PF13560.6 gi|386002056|ref|YP_005920355.1| - 0.00035 20.9 2.2 0.001 19.3 2.2 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|386002056|ref|YP_005920355.1| - 0.00036 20.2 2.1 0.00049 19.8 0.6 2.0 1 1 1 2 2 2 1 Homeodomain-like domain HTH_3 PF01381.22 gi|386002056|ref|YP_005920355.1| - 0.0011 19.0 0.2 0.0026 17.8 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix KORA PF16509.5 gi|386002056|ref|YP_005920355.1| - 0.0028 17.9 0.2 0.0057 16.9 0.2 1.5 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor HTH_Crp_2 PF13545.6 gi|386002056|ref|YP_005920355.1| - 0.0066 16.4 1.0 0.022 14.7 0.5 2.3 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|386002056|ref|YP_005920355.1| - 0.022 14.5 0.1 0.047 13.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|386002056|ref|YP_005920355.1| - 0.023 14.9 0.0 0.041 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_28 PF13518.6 gi|386002056|ref|YP_005920355.1| - 0.025 14.7 0.9 0.064 13.4 0.1 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_19 PF12844.7 gi|386002056|ref|YP_005920355.1| - 0.037 14.1 0.1 0.064 13.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|386002056|ref|YP_005920355.1| - 0.044 13.9 0.1 0.098 12.8 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 gi|386002056|ref|YP_005920355.1| - 0.05 13.5 0.8 0.15 12.0 0.2 2.2 2 1 0 2 2 2 0 MarR family CutA1 PF03091.15 gi|386002058|ref|YP_005920357.1| - 6.3e-31 106.2 0.0 7e-31 106.0 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein HIT PF01230.23 gi|386002059|ref|YP_005920358.1| - 3e-15 56.7 0.0 4e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|386002059|ref|YP_005920358.1| - 3.1e-11 43.8 0.0 4e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|386002059|ref|YP_005920358.1| - 0.0062 16.4 0.0 0.0082 16.0 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 POR_N PF01855.19 gi|386002060|ref|YP_005920359.1| - 3.4e-45 154.6 0.0 4.9e-45 154.1 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|386002060|ref|YP_005920359.1| - 7.3e-27 94.6 0.1 1.4e-26 93.6 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|386002060|ref|YP_005920359.1| - 1.8e-07 30.9 1.0 1e-05 25.2 0.6 2.5 1 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|386002060|ref|YP_005920359.1| - 0.0034 17.7 0.0 0.0079 16.5 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_C PF02775.21 gi|386002061|ref|YP_005920360.1| - 6.3e-29 100.7 0.0 8.7e-29 100.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|386002061|ref|YP_005920360.1| - 8.3e-10 38.7 0.1 1.8e-09 37.6 0.0 1.5 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal XFP_N PF09364.10 gi|386002061|ref|YP_005920360.1| - 0.073 11.9 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain Rubredoxin PF00301.20 gi|386002062|ref|YP_005920361.1| - 4.2e-26 90.7 5.1 4.7e-26 90.6 5.1 1.0 1 0 0 1 1 1 1 Rubredoxin PHD_4 PF16866.5 gi|386002062|ref|YP_005920361.1| - 0.00017 21.6 0.1 0.00023 21.2 0.1 1.2 1 0 0 1 1 1 1 PHD-finger TF_Zn_Ribbon PF08271.12 gi|386002062|ref|YP_005920361.1| - 0.00026 20.4 0.8 0.32 10.6 0.1 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding ADK_lid PF05191.14 gi|386002062|ref|YP_005920361.1| - 0.0023 17.8 0.7 0.87 9.6 0.0 2.1 2 0 0 2 2 2 2 Adenylate kinase, active site lid zf-RanBP PF00641.18 gi|386002062|ref|YP_005920361.1| - 0.0053 16.0 3.1 0.038 13.3 0.5 2.1 2 0 0 2 2 2 1 Zn-finger in Ran binding protein and others zf-H2C2_2 PF13465.6 gi|386002062|ref|YP_005920361.1| - 0.0072 16.7 0.5 2.4 8.7 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain zf-Sec23_Sec24 PF04810.15 gi|386002062|ref|YP_005920361.1| - 0.0072 16.3 0.1 0.39 10.8 0.0 2.1 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger Desulfoferrod_N PF06397.12 gi|386002062|ref|YP_005920361.1| - 0.0092 15.6 0.6 1.7 8.3 0.5 2.1 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|386002062|ref|YP_005920361.1| - 0.0094 16.1 2.3 0.094 12.8 2.3 2.0 1 1 0 1 1 1 1 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|386002062|ref|YP_005920361.1| - 0.013 15.2 0.8 3 7.7 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Nudix_N_2 PF14803.6 gi|386002062|ref|YP_005920361.1| - 0.016 15.1 3.4 0.21 11.5 0.3 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-nanos PF05741.13 gi|386002062|ref|YP_005920361.1| - 0.018 15.2 1.4 1.4 9.2 0.1 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain zf-RRN7 PF11781.8 gi|386002062|ref|YP_005920361.1| - 0.019 14.6 1.7 0.24 11.1 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Vps36-NZF-N PF16988.5 gi|386002062|ref|YP_005920361.1| - 0.04 13.3 0.2 0.36 10.3 0.0 2.0 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain RNA_POL_M_15KD PF02150.16 gi|386002062|ref|YP_005920361.1| - 0.045 13.6 1.9 1.5 8.8 0.3 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TFIIS_C PF01096.18 gi|386002062|ref|YP_005920361.1| - 0.045 13.6 3.0 3.2 7.7 0.4 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_ribbon_SprT PF17283.2 gi|386002062|ref|YP_005920361.1| - 0.049 13.6 4.7 3 7.8 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-C2H2_3 PF13878.6 gi|386002062|ref|YP_005920361.1| - 0.062 13.1 1.5 2.2 8.2 0.3 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO HypA PF01155.19 gi|386002062|ref|YP_005920361.1| - 0.064 13.3 0.1 0.073 13.1 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_2 PF03107.16 gi|386002062|ref|YP_005920361.1| - 0.085 13.2 1.1 6 7.3 0.2 2.1 2 0 0 2 2 2 0 C1 domain OrfB_Zn_ribbon PF07282.11 gi|386002062|ref|YP_005920361.1| - 0.086 12.8 1.7 9.6 6.2 0.2 2.0 1 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-ISL3 PF14690.6 gi|386002062|ref|YP_005920361.1| - 0.11 13.2 1.5 0.66 10.7 0.0 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-C2H2_12 PF18112.1 gi|386002062|ref|YP_005920361.1| - 0.16 12.4 1.6 5.6 7.5 0.1 2.4 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-C2H2 PF00096.26 gi|386002062|ref|YP_005920361.1| - 0.28 11.7 3.3 6.4 7.4 0.5 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|386002062|ref|YP_005920361.1| - 0.51 11.3 2.6 27 6.0 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2_6 PF13912.6 gi|386002062|ref|YP_005920361.1| - 0.68 10.0 2.3 22 5.2 0.7 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin_2 PF18073.1 gi|386002062|ref|YP_005920361.1| - 1.5 8.6 7.1 7.9 6.3 0.8 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ferritin PF00210.24 gi|386002063|ref|YP_005920362.1| - 4.1e-43 146.7 1.5 4.7e-43 146.5 1.5 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF4432 PF14486.6 gi|386002063|ref|YP_005920362.1| - 0.079 11.7 0.0 0.17 10.6 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4432) NAD_binding_2 PF03446.15 gi|386002064|ref|YP_005920363.1| - 1.5e-36 126.0 0.0 2.5e-36 125.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|386002064|ref|YP_005920363.1| - 1.9e-12 47.2 0.0 2.3e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|386002064|ref|YP_005920363.1| - 8.9e-06 25.2 0.0 1.4e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|386002064|ref|YP_005920363.1| - 0.0003 21.3 0.0 0.00072 20.1 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_11 PF14833.6 gi|386002064|ref|YP_005920363.1| - 0.045 14.0 0.0 0.079 13.2 0.0 1.4 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Mntp PF02659.15 gi|386002065|ref|YP_005920364.1| - 6.3e-49 165.6 13.5 6.3e-49 165.6 13.5 2.0 1 1 1 2 2 2 2 Putative manganese efflux pump IncE PF17627.2 gi|386002065|ref|YP_005920364.1| - 7.2 6.6 9.7 0.63 10.1 3.1 2.3 2 1 0 2 2 2 0 Inclusion membrane protein E Methyltransf_11 PF08241.12 gi|386002066|ref|YP_005920365.1| - 2.6e-16 60.0 0.1 4.6e-16 59.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386002066|ref|YP_005920365.1| - 5.1e-13 49.5 0.1 1e-12 48.5 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386002066|ref|YP_005920365.1| - 5.4e-07 29.2 0.1 1.6e-06 27.7 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|386002066|ref|YP_005920365.1| - 9.3e-07 28.8 0.0 1.2e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002066|ref|YP_005920365.1| - 1.6e-06 28.8 0.0 2.7e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386002066|ref|YP_005920365.1| - 0.00066 19.5 0.0 0.00094 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PsaL PF02605.15 gi|386002066|ref|YP_005920365.1| - 0.096 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Photosystem I reaction centre subunit XI GSH-S_N PF02951.14 gi|386002066|ref|YP_005920365.1| - 0.17 12.0 0.0 0.27 11.4 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, N-terminal domain DUF772 PF05598.11 gi|386002068|ref|YP_005920367.1| - 6.2e-22 77.4 0.1 1.5e-21 76.2 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|386002068|ref|YP_005920367.1| - 2.1e-14 53.7 0.4 5.3e-14 52.4 0.4 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|386002068|ref|YP_005920367.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease Aminotran_1_2 PF00155.21 gi|386002069|ref|YP_005920368.1| - 1e-61 209.2 0.0 1.2e-61 209.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|386002069|ref|YP_005920368.1| - 0.0018 16.9 0.0 0.0029 16.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|386002069|ref|YP_005920368.1| - 0.014 14.7 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Rsbr_N PF08678.10 gi|386002069|ref|YP_005920368.1| - 0.04 14.0 0.0 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 Rsbr N terminal Aminotran_5 PF00266.19 gi|386002069|ref|YP_005920368.1| - 0.063 12.2 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V DMRL_synthase PF00885.19 gi|386002070|ref|YP_005920369.1| - 7.8e-34 116.5 0.4 8.6e-34 116.4 0.4 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Metallophos_3 PF14582.6 gi|386002070|ref|YP_005920369.1| - 0.017 14.4 0.5 0.099 11.9 0.2 2.2 1 1 2 3 3 3 0 Metallophosphoesterase, calcineurin superfamily Aminotran_4 PF01063.19 gi|386002071|ref|YP_005920370.1| - 4.8e-56 190.1 0.0 5.6e-56 189.9 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV AD PF09793.9 gi|386002071|ref|YP_005920370.1| - 0.14 12.3 0.1 0.34 11.1 0.0 1.6 2 0 0 2 2 2 0 Anticodon-binding domain UPF0047 PF01894.17 gi|386002072|ref|YP_005920371.1| - 1.2e-37 128.6 0.0 1.3e-37 128.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Lactamase_B_2 PF12706.7 gi|386002074|ref|YP_005920373.1| - 6.8e-07 29.0 0.0 7.3e-05 22.4 0.1 2.5 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|386002074|ref|YP_005920373.1| - 7.7e-06 26.1 4.8 8.9e-06 25.8 0.4 2.4 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Transglut_core PF01841.19 gi|386002076|ref|YP_005920375.1| - 3.8e-14 53.1 0.1 6.7e-14 52.3 0.1 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily LTD PF00932.19 gi|386002076|ref|YP_005920375.1| - 1.4e-07 31.8 0.0 6.7e-07 29.7 0.0 2.1 2 0 0 2 2 2 1 Lamin Tail Domain DUF553 PF04473.12 gi|386002076|ref|YP_005920375.1| - 0.0026 17.3 0.0 0.11 12.0 0.0 2.5 1 1 0 1 1 1 1 Transglutaminase-like domain Gmad2 PF10648.9 gi|386002076|ref|YP_005920375.1| - 0.0059 16.8 0.0 0.064 13.5 0.0 2.5 2 0 0 2 2 2 1 Immunoglobulin-like domain of bacterial spore germination Y_Y_Y PF07495.13 gi|386002076|ref|YP_005920375.1| - 0.25 11.3 0.6 31 4.6 0.1 2.7 2 0 0 2 2 2 0 Y_Y_Y domain Acetyltransf_2 PF00797.17 gi|386002076|ref|YP_005920375.1| - 0.27 11.0 0.0 0.45 10.3 0.0 1.2 1 0 0 1 1 1 0 N-acetyltransferase Cation_efflux PF01545.21 gi|386002077|ref|YP_005920376.1| - 6.9e-33 114.1 11.4 8.7e-33 113.7 11.4 1.1 1 0 0 1 1 1 1 Cation efflux family Nitro_FeMo-Co PF02579.17 gi|386002077|ref|YP_005920376.1| - 2.2e-14 53.5 0.0 4.5e-14 52.6 0.0 1.5 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ZT_dimer PF16916.5 gi|386002077|ref|YP_005920376.1| - 2.7e-14 53.0 0.5 4.4e-14 52.4 0.5 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter CT_C_D PF02682.16 gi|386002077|ref|YP_005920376.1| - 0.04 13.7 0.0 0.33 10.7 0.0 2.1 2 0 0 2 2 2 0 Carboxyltransferase domain, subdomain C and D FG-GAP PF01839.23 gi|386002078|ref|YP_005920377.1| - 1.7e-45 152.7 50.1 7.7e-05 22.7 0.3 11.1 11 0 0 11 11 11 10 FG-GAP repeat VCBS PF13517.6 gi|386002078|ref|YP_005920377.1| - 2e-39 134.0 92.4 2.7e-07 31.1 4.3 8.2 2 2 9 11 11 11 11 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella TcdB_toxin_midN PF12256.8 gi|386002078|ref|YP_005920377.1| - 3.2e-17 62.5 2.0 0.48 9.8 0.0 9.8 10 0 0 10 10 10 6 Insecticide toxin TcdB middle/N-terminal region DUF1416 PF07210.12 gi|386002078|ref|YP_005920377.1| - 5.2e-10 39.1 20.2 4 7.4 0.1 9.8 8 1 1 10 10 10 6 Protein of unknown function (DUF1416) PQQ_2 PF13360.6 gi|386002078|ref|YP_005920377.1| - 4.2e-08 33.1 3.7 0.0038 16.8 0.2 3.5 2 1 1 3 3 3 2 PQQ-like domain DUF899 PF05988.12 gi|386002078|ref|YP_005920377.1| - 0.0098 15.4 9.4 65 2.9 0.0 7.6 9 1 1 10 10 10 0 Bacterial protein of unknown function (DUF899) tRNA_anti-codon PF01336.25 gi|386002078|ref|YP_005920377.1| - 0.053 13.5 0.0 4.9e+02 0.8 0.0 6.0 9 0 0 9 9 9 0 OB-fold nucleic acid binding domain MFS_1 PF07690.16 gi|386002080|ref|YP_005920379.1| - 4.9e-55 186.9 48.7 4.9e-55 186.9 48.7 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|386002080|ref|YP_005920379.1| - 1.3e-09 37.0 17.1 3.1e-08 32.5 6.6 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.7 gi|386002080|ref|YP_005920379.1| - 6.8e-06 25.2 12.2 0.017 14.0 0.1 2.3 2 0 0 2 2 2 2 MFS_1 like family Adipogenin PF15202.6 gi|386002080|ref|YP_005920379.1| - 0.13 12.3 0.4 0.3 11.2 0.4 1.6 1 0 0 1 1 1 0 Adipogenin Nitro_FeMo-Co PF02579.17 gi|386002081|ref|YP_005920380.1| - 7.8e-25 87.0 0.2 1.1e-24 86.6 0.2 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor NIF3 PF01784.18 gi|386002081|ref|YP_005920380.1| - 0.11 12.1 0.1 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) Semialdhyde_dhC PF02774.18 gi|386002081|ref|YP_005920380.1| - 0.15 12.1 3.0 0.49 10.4 0.6 2.0 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, dimerisation domain Nitro_FeMo-Co PF02579.17 gi|386002082|ref|YP_005920381.1| - 3.9e-21 75.2 0.0 5e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF4440 PF14534.6 gi|386002083|ref|YP_005920382.1| - 0.0064 16.9 0.0 0.0078 16.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) DUF11 PF01345.18 gi|386002084|ref|YP_005920383.1| - 1.4e-19 70.1 1.1 8e-05 22.9 0.0 4.0 4 0 0 4 4 4 3 Domain of unknown function DUF11 bMG10 PF17973.1 gi|386002084|ref|YP_005920383.1| - 0.00045 20.4 0.0 0.98 9.6 0.0 2.9 2 0 0 2 2 2 2 Bacterial Alpha-2-macroglobulin MG10 domain CMD PF02627.20 gi|386002088|ref|YP_005920387.1| - 6.9e-15 54.9 0.8 9.5e-15 54.4 0.8 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.13 gi|386002088|ref|YP_005920387.1| - 0.017 14.1 0.0 0.021 13.8 0.0 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) Rad50_zn_hook PF04423.14 gi|386002088|ref|YP_005920387.1| - 0.043 13.7 0.1 0.096 12.5 0.1 1.7 1 0 0 1 1 1 0 Rad50 zinc hook motif MCR_C PF04609.12 gi|386002089|ref|YP_005920388.1| - 5.6e-118 392.9 0.1 6.6e-118 392.7 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.9 gi|386002090|ref|YP_005920389.1| - 2e-59 200.1 0.0 2.2e-59 200.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.20 gi|386002091|ref|YP_005920390.1| - 4.7e-58 196.8 4.7 6.4e-58 196.3 4.7 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|386002091|ref|YP_005920390.1| - 0.00025 21.4 0.1 0.0022 18.4 0.1 2.3 1 1 0 1 1 1 1 Cell division protein FtsA MreB_Mbl PF06723.13 gi|386002091|ref|YP_005920390.1| - 0.0054 15.6 0.4 0.014 14.2 0.1 1.8 3 0 0 3 3 3 1 MreB/Mbl protein MutL PF13941.6 gi|386002091|ref|YP_005920390.1| - 0.071 11.7 3.1 0.49 8.9 0.2 2.3 2 0 0 2 2 2 0 MutL protein Hydant_A_N PF05378.13 gi|386002091|ref|YP_005920390.1| - 0.44 10.2 3.9 0.67 9.6 0.3 2.7 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region DUF2112 PF09885.9 gi|386002092|ref|YP_005920391.1| - 6e-62 207.9 0.0 6.7e-62 207.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.9 gi|386002093|ref|YP_005920392.1| - 7.6e-43 144.4 0.0 1.1e-42 143.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) P66_CC PF16563.5 gi|386002093|ref|YP_005920392.1| - 0.31 10.7 1.5 0.84 9.3 0.1 2.1 2 0 0 2 2 2 0 Coiled-coil and interaction region of P66A and P66B with MBD2 Pro_isomerase PF00160.21 gi|386002094|ref|YP_005920393.1| - 0.022 15.0 0.2 12 6.1 0.0 4.1 4 1 0 5 5 5 0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABC_tran PF00005.27 gi|386002095|ref|YP_005920394.1| - 1.4e-49 168.1 0.0 6.7e-27 94.7 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_29 PF13555.6 gi|386002095|ref|YP_005920394.1| - 2e-05 24.2 0.2 0.12 12.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|386002095|ref|YP_005920394.1| - 2.6e-05 24.2 0.4 0.093 12.6 0.0 2.6 3 0 0 3 3 2 2 RsgA GTPase SMC_N PF02463.19 gi|386002095|ref|YP_005920394.1| - 3.7e-05 23.3 2.0 0.035 13.5 0.0 3.5 3 1 0 4 4 4 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|386002095|ref|YP_005920394.1| - 0.00037 20.4 0.6 3.4 7.4 0.1 3.3 2 1 1 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|386002095|ref|YP_005920394.1| - 0.00089 19.7 0.2 0.35 11.2 0.0 2.6 2 0 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.22 gi|386002095|ref|YP_005920394.1| - 0.0039 16.4 1.7 1.6 7.9 0.2 3.1 4 0 0 4 4 4 1 NB-ARC domain AAA_22 PF13401.6 gi|386002095|ref|YP_005920394.1| - 0.0067 16.7 1.0 4.6 7.5 0.3 2.7 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|386002095|ref|YP_005920394.1| - 0.011 15.9 0.7 0.58 10.2 0.0 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_30 PF13604.6 gi|386002095|ref|YP_005920394.1| - 0.014 15.1 0.2 1.7 8.3 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.6 gi|386002095|ref|YP_005920394.1| - 0.016 15.4 0.7 0.56 10.4 0.3 2.6 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|386002095|ref|YP_005920394.1| - 0.016 15.7 0.9 0.58 10.7 0.3 2.6 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|386002095|ref|YP_005920394.1| - 0.023 14.9 0.1 15 5.9 0.0 3.3 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|386002095|ref|YP_005920394.1| - 0.029 13.7 0.3 2.9 7.2 0.1 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MobB PF03205.14 gi|386002095|ref|YP_005920394.1| - 0.037 13.9 0.7 2.1 8.2 0.2 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.18 gi|386002095|ref|YP_005920394.1| - 0.048 13.4 0.0 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family PduV-EutP PF10662.9 gi|386002095|ref|YP_005920394.1| - 0.048 13.4 0.7 0.81 9.4 0.1 2.6 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|386002095|ref|YP_005920394.1| - 0.055 13.5 2.2 9.3 6.4 0.1 3.2 3 1 0 3 3 3 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|386002095|ref|YP_005920394.1| - 0.12 12.0 0.4 2 8.1 0.2 2.4 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|386002095|ref|YP_005920394.1| - 0.12 12.8 0.0 7.3 7.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|386002095|ref|YP_005920394.1| - 0.13 12.0 0.1 49 3.6 0.0 3.3 3 0 0 3 3 3 0 IstB-like ATP binding protein zf-CSL PF05207.13 gi|386002095|ref|YP_005920394.1| - 0.15 11.8 0.7 3.6 7.4 0.1 2.4 2 0 0 2 2 2 0 CSL zinc finger DUF5532 PF17673.1 gi|386002095|ref|YP_005920394.1| - 0.16 12.0 0.0 1.9 8.6 0.0 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5532) AAA_13 PF13166.6 gi|386002095|ref|YP_005920394.1| - 0.34 9.5 0.7 6.5 5.3 0.3 2.5 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|386002095|ref|YP_005920394.1| - 1.2 9.3 2.9 3.9 7.7 0.7 2.7 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|386002095|ref|YP_005920394.1| - 1.4 8.9 3.1 15 5.5 0.1 2.4 2 0 0 2 2 2 0 NACHT domain cobW PF02492.19 gi|386002095|ref|YP_005920394.1| - 1.4 8.5 5.5 19 4.8 0.4 3.9 4 0 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain Flavoprotein PF02441.19 gi|386002096|ref|YP_005920395.1| - 9.7e-26 90.4 0.1 1.3e-25 90.0 0.1 1.2 1 0 0 1 1 1 1 Flavoprotein DS PF01916.17 gi|386002097|ref|YP_005920396.1| - 4.5e-100 334.6 0.0 5.1e-100 334.4 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Oxidored_q4 PF00507.19 gi|386002098|ref|YP_005920397.1| - 2.1e-28 98.4 2.0 2.1e-28 98.4 2.0 1.9 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MatC_N PF07158.11 gi|386002098|ref|YP_005920397.1| - 0.1 12.6 0.4 0.1 12.6 0.4 2.6 1 1 1 2 2 2 0 Dicarboxylate carrier protein MatC N-terminus Oxidored_q6 PF01058.22 gi|386002099|ref|YP_005920398.1| - 1e-19 70.6 0.0 1.7e-19 69.9 0.0 1.4 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|386002100|ref|YP_005920399.1| - 8.6e-79 264.4 0.2 8.5e-76 254.6 0.2 2.3 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|386002100|ref|YP_005920399.1| - 2.8e-29 102.2 0.0 5.2e-29 101.3 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|386002100|ref|YP_005920399.1| - 1.7e-07 30.6 0.1 3.3e-07 29.6 0.0 1.5 2 0 0 2 2 2 1 Nickel-dependent hydrogenase NADHdh PF00146.21 gi|386002101|ref|YP_005920400.1| - 1.3e-107 359.6 20.7 1.6e-107 359.3 20.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|386002102|ref|YP_005920401.1| - 3.3e-11 42.5 22.5 9.6e-06 25.2 9.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386002102|ref|YP_005920401.1| - 1.7e-10 41.3 13.7 4.1e-10 40.1 13.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386002102|ref|YP_005920401.1| - 4.4e-09 36.3 20.9 5.3e-07 29.6 11.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386002102|ref|YP_005920401.1| - 2.9e-08 33.8 26.1 2.2e-06 27.7 13.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386002102|ref|YP_005920401.1| - 7.3e-07 28.9 11.4 0.0014 18.6 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386002102|ref|YP_005920401.1| - 3e-06 27.3 29.2 0.00032 20.8 16.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386002102|ref|YP_005920401.1| - 1.1e-05 25.8 11.8 0.0015 19.0 13.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386002102|ref|YP_005920401.1| - 1.6e-05 25.7 17.1 0.0016 19.4 2.0 3.0 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|386002102|ref|YP_005920401.1| - 7.2e-05 23.3 12.6 0.0038 17.7 0.5 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002102|ref|YP_005920401.1| - 0.0007 19.6 21.8 0.016 15.2 9.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|386002102|ref|YP_005920401.1| - 0.00073 19.9 16.0 0.0044 17.4 4.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|386002102|ref|YP_005920401.1| - 0.44 11.4 16.3 0.26 12.1 3.2 2.7 1 1 1 3 3 3 0 4Fe-4S dicluster domain Coilin_N PF15862.5 gi|386002102|ref|YP_005920401.1| - 1 9.2 6.9 1.6 8.6 6.9 1.3 1 0 0 1 1 1 0 Coilin N-terminus DNA_pol3_a_NII PF11490.8 gi|386002102|ref|YP_005920401.1| - 1.4 8.8 8.8 1.6 8.6 7.7 1.6 2 0 0 2 2 2 0 DNA polymerase III polC-type N-terminus II Fer4_15 PF13459.6 gi|386002102|ref|YP_005920401.1| - 1.4 9.7 23.5 1.2 10.0 2.8 3.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|386002102|ref|YP_005920401.1| - 3.7 7.8 17.9 1.5 9.0 1.3 3.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386002102|ref|YP_005920401.1| - 6 8.1 24.7 0.36 11.9 8.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Oxidored_q3 PF00499.20 gi|386002103|ref|YP_005920402.1| - 8e-21 74.3 9.8 8e-21 74.3 9.8 1.8 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF3043 PF11241.8 gi|386002103|ref|YP_005920402.1| - 0.3 11.1 2.5 0.24 11.4 1.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3043) DUF4040 PF13244.6 gi|386002103|ref|YP_005920402.1| - 0.72 10.0 13.3 0.4 10.9 11.3 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) DUF1700 PF08006.11 gi|386002103|ref|YP_005920402.1| - 6.3 6.3 11.7 7.6 6.0 11.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) Oxidored_q3 PF00499.20 gi|386002104|ref|YP_005920403.1| - 2.9e-09 36.8 1.1 3.7e-09 36.4 1.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FtsX PF02687.21 gi|386002104|ref|YP_005920403.1| - 0.052 14.0 2.5 0.11 13.0 2.5 1.5 1 1 0 1 1 1 0 FtsX-like permease family Oxidored_q2 PF00420.24 gi|386002105|ref|YP_005920404.1| - 2.1e-22 78.7 6.6 2.3e-22 78.6 6.6 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|386002106|ref|YP_005920405.1| - 9.6e-77 258.1 24.3 9.6e-77 258.1 24.3 2.3 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|386002106|ref|YP_005920405.1| - 5.2e-17 61.7 0.7 5.2e-17 61.7 0.7 3.5 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|386002106|ref|YP_005920405.1| - 0.00024 20.8 0.2 0.00095 18.9 0.2 2.0 1 1 0 1 1 1 1 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus NADH5_C PF06455.11 gi|386002106|ref|YP_005920405.1| - 0.062 12.9 0.0 0.062 12.9 0.0 4.3 4 1 0 4 4 4 0 NADH dehydrogenase subunit 5 C-terminus Proton_antipo_M PF00361.20 gi|386002107|ref|YP_005920406.1| - 2.2e-75 253.6 27.6 4.6e-75 252.5 27.6 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|386002107|ref|YP_005920406.1| - 0.0088 16.1 0.2 0.0088 16.1 0.2 3.2 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q5_N PF01059.17 gi|386002107|ref|YP_005920406.1| - 0.04 14.0 0.4 0.04 14.0 0.4 4.6 4 2 0 4 4 4 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|386002108|ref|YP_005920407.1| - 8.4e-62 209.0 27.9 8.4e-62 209.0 27.9 2.6 2 1 0 2 2 2 1 Proton-conducting membrane transporter Sulf_transp PF04143.14 gi|386002109|ref|YP_005920408.1| - 1.3e-15 57.8 9.0 1.6e-15 57.5 9.0 1.1 1 0 0 1 1 1 1 Sulphur transport Sulf_transp PF04143.14 gi|386002110|ref|YP_005920409.1| - 2.1e-32 112.9 11.8 2.5e-32 112.7 11.8 1.0 1 0 0 1 1 1 1 Sulphur transport SAM_adeno_trans PF01887.16 gi|386002111|ref|YP_005920410.1| - 1.9e-66 223.9 0.0 2.4e-66 223.6 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Chitin_bind_4 PF00379.23 gi|386002111|ref|YP_005920410.1| - 0.071 13.6 0.0 0.21 12.2 0.0 1.8 1 0 0 1 1 1 0 Insect cuticle protein Acetyltransf_2 PF00797.17 gi|386002111|ref|YP_005920410.1| - 0.16 11.7 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 N-acetyltransferase CitMHS PF03600.16 gi|386002112|ref|YP_005920411.1| - 1.5e-54 185.3 16.7 2.4e-54 184.6 16.7 1.3 1 0 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 gi|386002112|ref|YP_005920411.1| - 9.8e-12 44.5 0.1 7.3e-06 25.7 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain Sm_multidrug_ex PF06695.11 gi|386002113|ref|YP_005920412.1| - 4.7e-38 130.5 1.6 6.6e-38 130.1 1.6 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein Glyco_hydro_62 PF03664.13 gi|386002113|ref|YP_005920412.1| - 0.19 11.0 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 62 LTD PF00932.19 gi|386002115|ref|YP_005920414.1| - 6.3e-12 45.8 0.1 8.5e-12 45.4 0.1 1.3 1 0 0 1 1 1 1 Lamin Tail Domain CBM_20 PF00686.19 gi|386002115|ref|YP_005920414.1| - 0.14 12.1 0.1 0.94 9.4 0.0 2.0 1 1 1 2 2 2 0 Starch binding domain LTD PF00932.19 gi|386002116|ref|YP_005920415.1| - 2.6e-12 47.1 0.0 4e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Lamin Tail Domain LTD PF00932.19 gi|386002117|ref|YP_005920416.1| - 1.9e-15 57.2 0.1 2.7e-15 56.7 0.1 1.3 1 0 0 1 1 1 1 Lamin Tail Domain DUF2749 PF10907.8 gi|386002117|ref|YP_005920416.1| - 0.032 14.4 0.1 0.054 13.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) DUF296 PF03479.15 gi|386002118|ref|YP_005920417.1| - 6.8e-16 58.6 0.1 7.9e-16 58.4 0.1 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Radical_SAM_N PF08497.10 gi|386002119|ref|YP_005920418.1| - 4.7e-122 406.9 0.0 5.9e-122 406.6 0.0 1.1 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|386002119|ref|YP_005920418.1| - 1.5e-24 87.0 0.0 2.2e-24 86.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|386002119|ref|YP_005920418.1| - 3.1e-19 70.0 0.2 1.6e-18 67.6 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|386002119|ref|YP_005920418.1| - 0.09 12.8 0.0 17 5.5 0.0 2.6 2 0 0 2 2 2 0 B12 binding domain Met_10 PF02475.16 gi|386002120|ref|YP_005920419.1| - 7e-56 189.1 0.1 9.1e-56 188.8 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|386002120|ref|YP_005920419.1| - 5.8e-12 45.3 0.1 1.4e-11 44.1 0.1 1.7 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain MTS PF05175.14 gi|386002120|ref|YP_005920419.1| - 7.6e-09 35.3 0.1 1.2e-07 31.4 0.0 2.5 3 0 0 3 3 3 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|386002120|ref|YP_005920419.1| - 3.7e-07 30.8 0.2 9.8e-07 29.4 0.1 1.8 2 0 0 2 2 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|386002120|ref|YP_005920419.1| - 3.9e-06 26.6 0.0 7.4e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|386002120|ref|YP_005920419.1| - 6.8e-06 25.7 0.2 1.1e-05 25.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|386002120|ref|YP_005920419.1| - 2e-05 24.4 0.0 4.1e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|386002120|ref|YP_005920419.1| - 3.2e-05 23.9 0.5 0.00015 21.7 0.1 2.1 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Methyltransf_11 PF08241.12 gi|386002120|ref|YP_005920419.1| - 4e-05 24.2 0.1 9.5e-05 23.0 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|386002120|ref|YP_005920419.1| - 0.00014 21.2 0.3 0.00023 20.4 0.3 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltr_RsmB-F PF01189.17 gi|386002120|ref|YP_005920419.1| - 0.00054 19.7 0.2 0.0016 18.1 0.2 1.7 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_24 PF13578.6 gi|386002120|ref|YP_005920419.1| - 0.0012 19.8 1.2 0.012 16.6 0.2 2.4 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|386002120|ref|YP_005920419.1| - 0.0043 16.6 0.0 0.0065 16.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|386002120|ref|YP_005920419.1| - 0.0064 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltrans_SAM PF10672.9 gi|386002120|ref|YP_005920419.1| - 0.019 14.1 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Methyltransf_23 PF13489.6 gi|386002120|ref|YP_005920419.1| - 0.033 14.0 0.0 0.05 13.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|386002120|ref|YP_005920419.1| - 0.085 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB NAD_binding_2 PF03446.15 gi|386002120|ref|YP_005920419.1| - 0.096 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DNA_methylase PF00145.17 gi|386002120|ref|YP_005920419.1| - 0.16 11.3 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase tRNA_U5-meth_tr PF05958.11 gi|386002120|ref|YP_005920419.1| - 0.21 10.6 0.1 0.3 10.0 0.1 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase VWA_2 PF13519.6 gi|386002121|ref|YP_005920420.1| - 3.1e-12 47.1 0.0 5.6e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|386002121|ref|YP_005920420.1| - 3.6e-12 46.9 0.0 5e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|386002121|ref|YP_005920420.1| - 1.7e-05 24.3 0.5 3.2e-05 23.4 0.5 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein ADH_zinc_N_2 PF13602.6 gi|386002121|ref|YP_005920420.1| - 0.1 13.6 0.1 5.8 8.0 0.1 2.5 2 0 0 2 2 2 0 Zinc-binding dehydrogenase AAA_lid_2 PF17863.1 gi|386002122|ref|YP_005920421.1| - 7.9e-22 76.9 1.9 2e-21 75.6 1.9 1.8 1 0 0 1 1 1 1 AAA lid domain Mg_chelatase PF01078.21 gi|386002122|ref|YP_005920421.1| - 1.2e-12 47.7 2.0 2.5e-08 33.6 0.0 3.2 3 1 1 4 4 4 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|386002122|ref|YP_005920421.1| - 3.8e-09 36.7 0.1 1.9e-05 24.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|386002122|ref|YP_005920421.1| - 3.1e-06 26.5 0.1 0.00011 21.4 0.0 2.4 2 1 0 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|386002122|ref|YP_005920421.1| - 9.8e-05 22.1 0.7 0.027 14.2 0.0 3.0 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|386002122|ref|YP_005920421.1| - 0.021 15.2 0.0 0.043 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_3 PF07726.11 gi|386002122|ref|YP_005920421.1| - 0.032 14.1 0.0 1 9.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|386002122|ref|YP_005920421.1| - 0.13 11.9 0.3 7.1 6.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain TraL PF07178.11 gi|386002123|ref|YP_005920422.1| - 0.57 10.7 4.9 1 9.9 0.2 2.3 1 1 1 2 2 2 0 TraL protein DUF2207 PF09972.9 gi|386002123|ref|YP_005920422.1| - 4.6 5.9 7.3 5.6 5.6 7.4 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) AAA PF00004.29 gi|386002124|ref|YP_005920423.1| - 2.5e-97 322.4 0.0 1.9e-47 161.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|386002124|ref|YP_005920423.1| - 2.5e-32 110.4 1.6 7.2e-15 54.5 0.1 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|386002124|ref|YP_005920423.1| - 3.5e-30 104.0 0.1 3e-29 101.0 0.1 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|386002124|ref|YP_005920423.1| - 2.4e-15 56.1 0.1 2.6e-14 52.7 0.1 2.6 2 1 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|386002124|ref|YP_005920423.1| - 3.8e-14 53.4 0.5 9.8e-06 26.1 0.0 3.6 3 2 0 3 3 2 2 AAA ATPase domain AAA_5 PF07728.14 gi|386002124|ref|YP_005920423.1| - 8.6e-14 51.7 0.2 2.1e-05 24.5 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|386002124|ref|YP_005920423.1| - 2e-13 50.4 0.0 2.3e-05 24.2 0.0 3.3 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|386002124|ref|YP_005920423.1| - 1.4e-11 44.8 0.0 7e-05 23.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|386002124|ref|YP_005920423.1| - 8.7e-11 41.6 0.0 0.0004 19.7 0.0 3.4 4 0 0 4 4 4 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|386002124|ref|YP_005920423.1| - 3.5e-10 40.3 0.4 0.0098 16.2 0.0 3.8 2 2 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|386002124|ref|YP_005920423.1| - 1.7e-09 38.0 0.0 0.00096 19.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|386002124|ref|YP_005920423.1| - 5e-08 33.0 0.0 0.005 16.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|386002124|ref|YP_005920423.1| - 6.5e-08 33.2 0.1 0.019 15.5 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.6 gi|386002124|ref|YP_005920423.1| - 1e-06 29.1 0.0 0.0071 16.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|386002124|ref|YP_005920423.1| - 1.9e-06 27.7 0.1 0.056 13.2 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|386002124|ref|YP_005920423.1| - 2.8e-06 26.9 0.0 0.08 12.3 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|386002124|ref|YP_005920423.1| - 2.9e-06 26.9 0.0 0.083 12.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_3 PF07726.11 gi|386002124|ref|YP_005920423.1| - 4.8e-06 26.5 0.0 0.069 13.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|386002124|ref|YP_005920423.1| - 5.6e-06 26.2 0.0 0.16 11.6 0.0 2.9 2 1 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|386002124|ref|YP_005920423.1| - 6.1e-06 26.6 0.0 0.17 12.3 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Zeta_toxin PF06414.12 gi|386002124|ref|YP_005920423.1| - 6.2e-06 25.6 0.1 0.047 13.0 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin DUF2075 PF09848.9 gi|386002124|ref|YP_005920423.1| - 7.2e-06 25.5 0.0 0.017 14.4 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.27 gi|386002124|ref|YP_005920423.1| - 7.8e-06 26.4 0.0 0.058 13.9 0.0 2.5 2 0 0 2 2 2 2 ABC transporter ATPase PF06745.13 gi|386002124|ref|YP_005920423.1| - 1.3e-05 24.6 0.1 0.5 9.7 0.0 3.3 3 0 0 3 3 3 2 KaiC TsaE PF02367.17 gi|386002124|ref|YP_005920423.1| - 2.9e-05 24.1 0.0 0.27 11.2 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF815 PF05673.13 gi|386002124|ref|YP_005920423.1| - 0.0001 21.6 0.0 0.11 11.6 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|386002124|ref|YP_005920423.1| - 0.00013 21.8 0.0 0.3 10.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|386002124|ref|YP_005920423.1| - 0.00017 21.2 3.8 0.23 11.0 0.1 3.8 2 2 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|386002124|ref|YP_005920423.1| - 0.00019 21.3 0.0 0.25 11.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|386002124|ref|YP_005920423.1| - 0.00026 21.3 0.3 1.1 9.6 0.0 2.7 2 1 1 3 3 2 2 AAA domain Parvo_NS1 PF01057.17 gi|386002124|ref|YP_005920423.1| - 0.00029 20.0 0.0 0.5 9.4 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Cytidylate_kin2 PF13189.6 gi|386002124|ref|YP_005920423.1| - 0.00031 20.9 0.3 0.4 10.8 0.0 2.8 3 0 0 3 3 2 1 Cytidylate kinase-like family Sigma54_activ_2 PF14532.6 gi|386002124|ref|YP_005920423.1| - 0.00038 20.6 0.0 0.67 10.1 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_30 PF13604.6 gi|386002124|ref|YP_005920423.1| - 0.00048 19.9 0.6 0.97 9.1 0.0 2.6 2 1 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|386002124|ref|YP_005920423.1| - 0.00061 19.3 0.1 0.87 9.0 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein NACHT PF05729.12 gi|386002124|ref|YP_005920423.1| - 0.00074 19.5 0.1 2.9 7.8 0.0 3.2 3 1 0 4 4 3 1 NACHT domain Vps4_C PF09336.10 gi|386002124|ref|YP_005920423.1| - 0.00076 19.4 0.1 0.17 11.9 0.1 2.7 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain Hydin_ADK PF17213.3 gi|386002124|ref|YP_005920423.1| - 0.00089 19.6 0.1 0.25 11.6 0.0 2.7 3 0 0 3 3 2 1 Hydin Adenylate kinase-like domain CPT PF07931.12 gi|386002124|ref|YP_005920423.1| - 0.0013 18.6 0.0 0.37 10.6 0.0 2.5 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein NB-ARC PF00931.22 gi|386002124|ref|YP_005920423.1| - 0.0015 17.8 0.0 1.2 8.3 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain Bac_DnaA PF00308.18 gi|386002124|ref|YP_005920423.1| - 0.002 18.0 0.0 12 5.7 0.0 3.5 2 1 1 3 3 3 0 Bacterial dnaA protein TniB PF05621.11 gi|386002124|ref|YP_005920423.1| - 0.0037 16.7 0.0 4.7 6.6 0.0 3.6 3 1 1 4 4 4 0 Bacterial TniB protein AAA_17 PF13207.6 gi|386002124|ref|YP_005920423.1| - 0.0039 17.6 0.0 2.1 8.8 0.0 2.9 2 0 0 2 2 2 1 AAA domain SKI PF01202.22 gi|386002124|ref|YP_005920423.1| - 0.0048 17.0 0.0 3.6 7.7 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase ResIII PF04851.15 gi|386002124|ref|YP_005920423.1| - 0.0072 16.3 0.0 5.6 6.9 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ATPase_2 PF01637.18 gi|386002124|ref|YP_005920423.1| - 0.0072 16.3 0.1 24 4.8 0.0 3.4 2 2 1 3 3 3 0 ATPase domain predominantly from Archaea IPT PF01745.16 gi|386002124|ref|YP_005920423.1| - 0.0089 15.4 0.3 0.46 9.8 0.0 2.7 3 0 0 3 3 2 1 Isopentenyl transferase Torsin PF06309.11 gi|386002124|ref|YP_005920423.1| - 0.012 15.7 0.0 0.97 9.6 0.0 2.4 2 0 0 2 2 2 0 Torsin NTPase_1 PF03266.15 gi|386002124|ref|YP_005920423.1| - 0.013 15.4 0.3 3.3 7.6 0.0 3.0 2 1 1 3 3 3 0 NTPase Cytidylate_kin PF02224.18 gi|386002124|ref|YP_005920423.1| - 0.028 14.1 0.1 3.1 7.5 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|386002124|ref|YP_005920423.1| - 0.029 14.1 0.0 5.1 6.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ATP-synt_ab PF00006.25 gi|386002124|ref|YP_005920423.1| - 0.032 13.9 0.0 7.7 6.1 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Rad17 PF03215.15 gi|386002124|ref|YP_005920423.1| - 0.063 13.2 0.0 3.3 7.6 0.0 2.6 2 1 0 2 2 2 0 Rad17 P-loop domain DUF234 PF03008.14 gi|386002124|ref|YP_005920423.1| - 0.081 13.4 0.2 6.6 7.3 0.1 2.8 1 1 1 2 2 2 0 Archaea bacterial proteins of unknown function KAP_NTPase PF07693.14 gi|386002124|ref|YP_005920423.1| - 0.098 11.9 0.0 7.4 5.7 0.0 3.2 3 1 1 4 4 4 0 KAP family P-loop domain KTI12 PF08433.10 gi|386002124|ref|YP_005920423.1| - 0.13 11.7 0.0 5.6 6.3 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Guanylate_kin PF00625.21 gi|386002124|ref|YP_005920423.1| - 0.17 11.6 1.8 72 3.0 0.0 4.1 3 2 2 5 5 4 0 Guanylate kinase PRC PF05239.16 gi|386002125|ref|YP_005920424.1| - 1.3e-13 50.8 0.0 1.4e-13 50.7 0.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain Pro_isomerase PF00160.21 gi|386002126|ref|YP_005920425.1| - 1.7e-48 164.9 0.1 2.1e-48 164.6 0.1 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD STT3 PF02516.14 gi|386002127|ref|YP_005920426.1| - 5.1e-23 81.7 13.7 1.1e-22 80.6 13.7 1.4 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|386002127|ref|YP_005920426.1| - 3e-11 43.5 0.0 5.6e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|386002127|ref|YP_005920426.1| - 2.2e-10 41.0 12.3 2.2e-10 41.0 12.3 3.1 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase BsuPI PF12690.7 gi|386002128|ref|YP_005920427.1| - 0.018 15.1 0.0 1.6 8.8 0.0 2.5 2 0 0 2 2 2 0 Intracellular proteinase inhibitor FAA_hydrolase PF01557.18 gi|386002129|ref|YP_005920428.1| - 8.7e-67 225.0 0.0 1e-66 224.7 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DHODB_Fe-S_bind PF10418.9 gi|386002130|ref|YP_005920429.1| - 6.9e-11 41.8 6.5 7.3e-11 41.7 1.7 2.5 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|386002130|ref|YP_005920429.1| - 4.5e-05 24.1 0.1 0.0019 18.8 0.1 2.2 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Prokineticin PF06607.11 gi|386002130|ref|YP_005920429.1| - 0.092 13.1 0.7 0.19 12.1 0.7 1.5 1 0 0 1 1 1 0 Prokineticin Fer2_3 PF13085.6 gi|386002130|ref|YP_005920429.1| - 0.18 11.8 1.1 0.41 10.7 1.1 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHO_dh PF01180.21 gi|386002131|ref|YP_005920430.1| - 5.9e-55 186.6 0.2 6.8e-55 186.3 0.2 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|386002131|ref|YP_005920430.1| - 1.7e-07 31.0 4.4 2.8e-07 30.3 4.4 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase Dus PF01207.17 gi|386002131|ref|YP_005920430.1| - 2.6e-07 30.0 2.2 0.0027 16.9 0.2 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|386002131|ref|YP_005920430.1| - 0.0013 18.3 0.3 0.0039 16.7 0.1 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|386002131|ref|YP_005920430.1| - 0.014 14.5 1.0 0.028 13.4 1.0 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|386002131|ref|YP_005920430.1| - 0.022 14.1 0.3 0.041 13.2 0.3 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase NanE PF04131.14 gi|386002131|ref|YP_005920430.1| - 0.25 10.5 2.3 0.33 10.1 0.5 2.0 2 1 1 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.12 gi|386002131|ref|YP_005920430.1| - 0.26 10.4 1.8 0.2 10.8 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF561) ThiG PF05690.14 gi|386002131|ref|YP_005920430.1| - 0.62 9.3 5.7 0.64 9.3 3.0 2.1 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DUF4573 PF15140.6 gi|386002132|ref|YP_005920431.1| - 0.00018 21.3 3.4 0.00023 21.0 0.4 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4573) Rimk_N PF18030.1 gi|386002132|ref|YP_005920431.1| - 0.17 12.3 0.0 1.1 9.8 0.0 2.0 2 0 0 2 2 2 0 RimK PreATP-grasp domain DEAD PF00270.29 gi|386002133|ref|YP_005920432.1| - 2.4e-49 167.5 0.0 1e-48 165.4 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|386002133|ref|YP_005920432.1| - 1.1e-32 112.6 0.0 3.6e-32 111.0 0.1 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|386002133|ref|YP_005920432.1| - 3.1e-06 27.3 0.0 5.3e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|386002133|ref|YP_005920432.1| - 2.2e-05 24.3 0.8 0.00078 19.2 0.0 2.8 3 1 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|386002133|ref|YP_005920432.1| - 0.00034 21.0 0.0 0.065 13.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|386002133|ref|YP_005920432.1| - 0.073 13.3 0.1 0.23 11.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain Flavi_DEAD PF07652.14 gi|386002133|ref|YP_005920432.1| - 0.12 12.3 0.0 0.35 10.8 0.0 1.8 1 1 0 1 1 1 0 Flavivirus DEAD domain UTP25 PF06862.12 gi|386002133|ref|YP_005920432.1| - 0.13 11.0 0.0 0.6 8.8 0.0 2.0 3 0 0 3 3 3 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 Phenol_monoox PF04663.12 gi|386002134|ref|YP_005920433.1| - 0.2 11.8 0.0 8.3 6.6 0.0 2.1 2 0 0 2 2 2 0 Phenol hydroxylase conserved region Mntp PF02659.15 gi|386002135|ref|YP_005920434.1| - 0.0071 16.1 4.3 0.0071 16.1 4.3 2.0 1 1 1 2 2 2 1 Putative manganese efflux pump YwiC PF14256.6 gi|386002135|ref|YP_005920434.1| - 0.11 12.8 6.6 0.047 14.0 3.8 1.7 1 1 0 1 1 1 0 YwiC-like protein Glutaredoxin PF00462.24 gi|386002136|ref|YP_005920435.1| - 0.00052 20.2 0.0 0.00097 19.3 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin Wzz PF02706.15 gi|386002136|ref|YP_005920435.1| - 5.5 7.4 6.4 12 6.2 0.4 2.6 2 1 1 3 3 3 0 Chain length determinant protein HTH_24 PF13412.6 gi|386002137|ref|YP_005920436.1| - 0.0044 16.6 0.0 0.012 15.2 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RPA_C PF08784.11 gi|386002137|ref|YP_005920436.1| - 0.008 16.8 0.1 0.12 13.1 0.0 2.2 2 1 0 2 2 2 1 Replication protein A C terminal DUF4883 PF16224.5 gi|386002137|ref|YP_005920436.1| - 0.043 14.1 0.0 0.12 12.7 0.0 1.6 2 0 0 2 2 2 0 DOmain of unknown function (DUF4883) TFIIE_alpha PF02002.17 gi|386002137|ref|YP_005920436.1| - 0.09 12.6 0.3 0.25 11.2 0.2 1.9 1 1 1 2 2 2 0 TFIIE alpha subunit UPF0147 PF03685.13 gi|386002137|ref|YP_005920436.1| - 0.095 12.8 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0147) EF-hand_8 PF13833.6 gi|386002139|ref|YP_005920438.1| - 0.0046 16.8 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 EF-hand domain pair Amidohydro_1 PF01979.20 gi|386002140|ref|YP_005920439.1| - 3.4e-66 223.9 0.0 3.9e-66 223.7 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|386002140|ref|YP_005920439.1| - 2.2e-12 47.2 0.3 1e-09 38.4 0.1 2.1 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|386002140|ref|YP_005920439.1| - 0.052 12.9 0.0 0.075 12.4 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase NPCBM_assoc PF10633.9 gi|386002141|ref|YP_005920440.1| - 5.5e-05 23.3 0.0 0.0042 17.3 0.0 2.9 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DeoC PF01791.9 gi|386002142|ref|YP_005920441.1| - 1.5e-58 198.2 0.1 1.8e-58 198.0 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|386002142|ref|YP_005920441.1| - 0.021 14.4 0.0 0.043 13.4 0.0 1.6 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family AP_endonuc_2 PF01261.24 gi|386002142|ref|YP_005920441.1| - 0.062 12.7 0.1 1 8.8 0.0 2.1 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Rhodanese PF00581.20 gi|386002143|ref|YP_005920442.1| - 2.1e-20 73.2 0.0 1.5e-13 51.2 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain HTH_32 PF13565.6 gi|386002144|ref|YP_005920443.1| - 2.4e-12 47.3 0.5 5e-12 46.3 0.5 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|386002144|ref|YP_005920443.1| - 3.1e-12 46.3 0.1 5.6e-12 45.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|386002144|ref|YP_005920443.1| - 2.2e-09 37.3 2.0 5.6e-09 36.0 2.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|386002144|ref|YP_005920443.1| - 1.9e-07 30.7 0.4 3.9e-07 29.7 0.4 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|386002144|ref|YP_005920443.1| - 0.00023 20.7 1.3 0.00066 19.3 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn helix LZ_Tnp_IS481 PF13011.6 gi|386002144|ref|YP_005920443.1| - 0.00067 20.1 0.8 0.0011 19.4 0.8 1.4 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 Acetyltransf_1 PF00583.25 gi|386002145|ref|YP_005920444.1| - 0.022 15.0 0.0 0.026 14.7 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_1 PF00583.25 gi|386002146|ref|YP_005920445.1| - 5.2e-06 26.7 0.0 8e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|386002146|ref|YP_005920445.1| - 0.0024 18.2 0.0 0.0032 17.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|386002146|ref|YP_005920445.1| - 0.019 14.9 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Aminotran_3 PF00202.21 gi|386002147|ref|YP_005920446.1| - 2.1e-80 270.4 0.0 2.6e-80 270.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|386002147|ref|YP_005920446.1| - 0.026 13.7 0.0 0.052 12.7 0.0 1.5 1 0 0 1 1 1 0 Aminotransferase class I and II Ectoine_synth PF06339.12 gi|386002148|ref|YP_005920447.1| - 4.5e-55 185.3 0.0 8.9e-30 103.5 0.0 2.0 2 0 0 2 2 2 2 Ectoine synthase Cupin_2 PF07883.11 gi|386002148|ref|YP_005920447.1| - 0.0032 17.2 0.4 0.97 9.2 0.3 2.3 2 0 0 2 2 2 2 Cupin domain Cupin_2 PF07883.11 gi|386002149|ref|YP_005920448.1| - 2.7e-12 46.2 0.1 3.4e-12 45.9 0.1 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|386002149|ref|YP_005920448.1| - 0.0016 18.3 0.1 0.0021 18.0 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|386002149|ref|YP_005920448.1| - 0.006 16.3 0.0 0.0071 16.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|386002149|ref|YP_005920448.1| - 0.014 15.6 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like DMSP_lyase PF16867.5 gi|386002149|ref|YP_005920448.1| - 0.035 13.7 0.0 0.045 13.4 0.0 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase LCIB_C_CA PF18599.1 gi|386002150|ref|YP_005920449.1| - 0.13 11.5 0.2 0.2 10.9 0.2 1.2 1 0 0 1 1 1 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases DUF2207 PF09972.9 gi|386002150|ref|YP_005920449.1| - 1.5 7.5 2.1 8.3 5.0 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Phosphodiest PF01663.22 gi|386002152|ref|YP_005920451.1| - 1.2e-13 51.4 0.0 2.7e-06 27.2 0.0 2.0 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|386002152|ref|YP_005920451.1| - 1e-09 38.2 0.0 5.1e-09 36.0 0.0 2.2 3 0 0 3 3 3 1 Sulfatase Metalloenzyme PF01676.18 gi|386002152|ref|YP_005920451.1| - 2.5e-05 23.8 0.0 0.00012 21.5 0.0 1.9 2 0 0 2 2 2 1 Metalloenzyme superfamily Arena_ncap_C PF17290.2 gi|386002152|ref|YP_005920451.1| - 0.14 11.4 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Arenavirus nucleocapsid C-terminal domain DUF362 PF04015.12 gi|386002153|ref|YP_005920452.1| - 7.6e-42 143.9 0.0 9.8e-42 143.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_2 PF12797.7 gi|386002153|ref|YP_005920452.1| - 1.8e-07 30.8 13.7 3.1e-05 23.8 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|386002153|ref|YP_005920452.1| - 4.6e-06 26.2 16.2 0.0066 16.2 2.6 2.9 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386002153|ref|YP_005920452.1| - 9.1e-06 26.5 3.7 0.032 15.2 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|386002153|ref|YP_005920452.1| - 5.3e-05 23.3 10.0 0.0011 19.1 11.1 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386002153|ref|YP_005920452.1| - 0.00016 22.2 10.7 0.00061 20.3 11.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386002153|ref|YP_005920452.1| - 0.00034 20.7 8.7 0.0014 18.7 8.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002153|ref|YP_005920452.1| - 0.00055 19.9 13.2 0.072 13.2 4.1 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|386002153|ref|YP_005920452.1| - 0.00062 20.3 5.2 0.28 11.8 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386002153|ref|YP_005920452.1| - 0.002 18.5 2.8 0.74 10.3 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|386002153|ref|YP_005920452.1| - 0.013 16.4 8.8 0.029 15.2 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386002153|ref|YP_005920452.1| - 0.017 15.6 13.1 0.57 10.8 2.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|386002153|ref|YP_005920452.1| - 0.027 14.6 13.5 0.14 12.3 2.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Lar_N PF09861.9 gi|386002153|ref|YP_005920452.1| - 0.19 10.9 0.5 0.31 10.2 0.5 1.2 1 0 0 1 1 1 0 Lactate racemase N-terminal domain Fer4_15 PF13459.6 gi|386002153|ref|YP_005920452.1| - 0.93 10.3 12.2 4.7 8.0 2.5 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|386002153|ref|YP_005920452.1| - 2.8 9.1 19.1 9.9 7.4 3.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|386002153|ref|YP_005920452.1| - 5.2 7.7 11.7 7.3 7.2 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I ATP-grasp_5 PF13549.6 gi|386002154|ref|YP_005920453.1| - 2e-74 249.8 0.1 3.6e-74 249.0 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|386002154|ref|YP_005920453.1| - 3e-45 153.4 0.7 6.2e-45 152.4 0.7 1.6 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|386002154|ref|YP_005920453.1| - 1.3e-21 77.3 0.0 3.8e-21 75.7 0.0 1.9 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|386002154|ref|YP_005920453.1| - 1.6e-10 41.5 0.1 6.1e-10 39.6 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|386002154|ref|YP_005920453.1| - 0.0059 16.2 0.4 0.01 15.4 0.4 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|386002154|ref|YP_005920453.1| - 0.077 12.5 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain MREG PF15812.5 gi|386002156|ref|YP_005920455.1| - 0.0093 16.3 0.0 0.017 15.5 0.0 1.5 1 1 0 1 1 1 1 Melanoregulin DUF11 PF01345.18 gi|386002157|ref|YP_005920456.1| - 2.9e-188 610.8 175.3 3.5e-14 52.9 1.6 30.0 30 0 0 30 30 30 28 Domain of unknown function DUF11 LTD PF00932.19 gi|386002157|ref|YP_005920456.1| - 1.4e-13 51.2 0.1 1.4e-12 48.0 0.1 3.0 1 0 0 1 1 1 1 Lamin Tail Domain bMG10 PF17973.1 gi|386002157|ref|YP_005920456.1| - 1.8e-13 50.8 16.8 2.9 8.1 0.0 15.8 20 1 0 20 20 20 3 Bacterial Alpha-2-macroglobulin MG10 domain Chlam_OMP6 PF03504.13 gi|386002157|ref|YP_005920456.1| - 2.7e-08 34.0 10.9 0.2 12.0 0.1 11.0 14 0 0 14 14 14 3 Chlamydia cysteine-rich outer membrane protein 6 MTD PF01993.18 gi|386002158|ref|YP_005920457.1| - 2.8e-118 394.2 0.1 3.2e-118 394.0 0.1 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF126 PF01989.16 gi|386002159|ref|YP_005920458.1| - 4.1e-34 116.2 1.5 4.8e-34 116.0 0.5 1.6 2 0 0 2 2 2 1 Aconitase X swivel domain PEP-utilizers PF00391.23 gi|386002159|ref|YP_005920458.1| - 0.038 13.7 0.3 0.073 12.8 0.3 1.5 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain DUF521 PF04412.13 gi|386002160|ref|YP_005920459.1| - 1.8e-150 501.1 0.0 2e-150 501.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) MtrH PF02007.18 gi|386002161|ref|YP_005920460.1| - 4.1e-98 328.2 0.0 4.7e-98 328.0 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit UvrC_HhH_N PF08459.11 gi|386002162|ref|YP_005920461.1| - 9.8e-47 158.7 0.0 2.4e-46 157.4 0.0 1.7 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.24 gi|386002162|ref|YP_005920461.1| - 4.5e-09 36.4 0.0 9.9e-09 35.4 0.0 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain UVR PF02151.19 gi|386002162|ref|YP_005920461.1| - 1.5e-08 34.1 5.0 3e-08 33.2 5.0 1.5 1 0 0 1 1 1 1 UvrB/uvrC motif PPP5 PF08321.12 gi|386002162|ref|YP_005920461.1| - 0.071 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 PPP5 TPR repeat region Ferlin_C PF16165.5 gi|386002163|ref|YP_005920462.1| - 0.13 12.2 0.1 0.15 12.0 0.1 1.0 1 0 0 1 1 1 0 Ferlin C-terminus DUF412 PF04217.13 gi|386002163|ref|YP_005920462.1| - 0.14 12.1 0.5 0.17 11.7 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF412 HicB_lk_antitox PF15919.5 gi|386002164|ref|YP_005920463.1| - 6.6e-09 35.9 0.1 7.9e-09 35.7 0.1 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF5012 PF16404.5 gi|386002164|ref|YP_005920463.1| - 0.0056 16.8 0.0 0.006 16.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5012) DUF1024 PF06260.12 gi|386002164|ref|YP_005920463.1| - 0.074 13.4 0.1 0.093 13.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1024) PHD_like PF12910.7 gi|386002164|ref|YP_005920463.1| - 0.12 12.4 0.0 0.15 12.0 0.0 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system MazE_antitoxin PF04014.18 gi|386002165|ref|YP_005920464.1| - 2.2e-08 33.8 0.3 3.6e-08 33.1 0.3 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|386002165|ref|YP_005920464.1| - 0.0038 17.2 0.2 0.0082 16.1 0.0 1.6 2 0 0 2 2 2 1 MraZ protein, putative antitoxin-like PIN PF01850.21 gi|386002166|ref|YP_005920465.1| - 4.3e-10 40.1 1.0 7e-10 39.5 1.0 1.4 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|386002166|ref|YP_005920465.1| - 3.1e-07 31.1 0.1 6.6e-07 30.1 0.1 1.5 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|386002166|ref|YP_005920465.1| - 0.062 13.8 0.1 0.46 10.9 0.0 2.0 1 1 1 2 2 2 0 PIN domain PIN PF01850.21 gi|386002167|ref|YP_005920466.1| - 6.9e-17 62.1 0.1 7.7e-17 61.9 0.1 1.0 1 0 0 1 1 1 1 PIN domain Flavodoxin_2 PF02525.17 gi|386002168|ref|YP_005920467.1| - 4e-36 124.6 0.0 4.6e-36 124.4 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.15 gi|386002168|ref|YP_005920467.1| - 5.3e-16 58.7 0.0 7.2e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase HEAT_2 PF13646.6 gi|386002169|ref|YP_005920468.1| - 2.2e-18 66.4 4.7 2.3e-12 47.1 0.3 2.2 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|386002169|ref|YP_005920468.1| - 4.8e-08 32.9 3.5 0.0088 16.6 0.1 4.0 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|386002169|ref|YP_005920468.1| - 2.4e-05 24.2 0.4 22 5.7 0.0 4.3 4 0 0 4 4 4 1 HEAT repeat HEAT_EZ PF13513.6 gi|386002169|ref|YP_005920468.1| - 0.00044 20.7 5.6 0.57 10.8 0.1 3.6 2 1 2 4 4 4 2 HEAT-like repeat Cnd1 PF12717.7 gi|386002169|ref|YP_005920468.1| - 0.00093 19.3 0.1 0.013 15.5 0.1 2.5 1 1 1 2 2 2 1 non-SMC mitotic condensation complex subunit 1 Vitellogenin_N PF01347.22 gi|386002169|ref|YP_005920468.1| - 0.016 13.7 0.0 0.019 13.4 0.0 1.1 1 0 0 1 1 1 0 Lipoprotein amino terminal region Arm PF00514.23 gi|386002169|ref|YP_005920468.1| - 0.021 14.8 0.1 18 5.5 0.0 3.1 3 0 0 3 3 3 0 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|386002169|ref|YP_005920468.1| - 0.12 10.9 0.1 4.9 5.6 0.0 2.1 1 1 1 2 2 2 0 Adaptin N terminal region POR PF01558.18 gi|386002170|ref|YP_005920469.1| - 3.8e-40 137.8 0.3 4.7e-40 137.5 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|386002171|ref|YP_005920470.1| - 1.5e-23 83.3 0.1 3.7e-23 82.0 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|386002171|ref|YP_005920470.1| - 2e-15 57.2 0.6 4.4e-08 33.2 0.3 2.4 2 0 0 2 2 2 2 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|386002171|ref|YP_005920470.1| - 1.4e-05 24.7 18.6 0.00024 20.8 6.2 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386002171|ref|YP_005920470.1| - 3.4e-05 23.7 18.0 0.0035 17.3 2.5 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386002171|ref|YP_005920470.1| - 4.4e-05 24.0 8.5 0.011 16.2 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386002171|ref|YP_005920470.1| - 0.0001 22.3 12.0 0.00075 19.6 12.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002171|ref|YP_005920470.1| - 0.00017 21.5 18.8 0.00052 20.0 4.2 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|386002171|ref|YP_005920470.1| - 0.00019 21.7 12.9 0.0063 16.9 3.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386002171|ref|YP_005920470.1| - 0.00029 20.9 11.7 0.0069 16.5 12.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386002171|ref|YP_005920470.1| - 0.0012 19.0 11.8 0.0021 18.2 10.9 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|386002171|ref|YP_005920470.1| - 0.024 14.2 0.3 0.11 12.1 0.2 2.2 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_16 PF13484.6 gi|386002171|ref|YP_005920470.1| - 0.13 13.2 10.0 0.2 12.6 3.2 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|386002171|ref|YP_005920470.1| - 0.37 11.5 9.8 6 7.7 0.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|386002171|ref|YP_005920470.1| - 2.1 9.0 12.3 5.1 7.7 3.7 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|386002171|ref|YP_005920470.1| - 8.6 6.9 13.1 1.8 9.1 2.5 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAL_decarboxy PF03306.13 gi|386002172|ref|YP_005920471.1| - 3.3e-82 275.1 0.0 3.8e-82 274.9 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase HHH_3 PF12836.7 gi|386002173|ref|YP_005920472.1| - 0.0024 18.1 0.1 0.0043 17.3 0.1 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Histidinol_dh PF00815.20 gi|386002174|ref|YP_005920473.1| - 4.8e-170 566.0 5.7 5.8e-170 565.7 5.7 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DNA_ligase_A_M PF01068.21 gi|386002175|ref|YP_005920474.1| - 2.6e-57 193.8 0.0 5.3e-57 192.8 0.0 1.5 2 0 0 2 2 2 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|386002175|ref|YP_005920474.1| - 1.1e-34 120.2 0.0 1.1e-31 110.5 0.0 2.4 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|386002175|ref|YP_005920474.1| - 3.8e-16 59.5 0.0 1.1e-15 58.0 0.0 1.9 1 1 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|386002175|ref|YP_005920474.1| - 1.8e-05 25.1 0.0 3.4e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 RNA ligase Homoserine_dh PF00742.19 gi|386002176|ref|YP_005920475.1| - 1.5e-31 109.7 0.0 2.2e-31 109.1 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|386002176|ref|YP_005920475.1| - 3e-11 44.0 0.0 5e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 gi|386002176|ref|YP_005920475.1| - 0.023 15.4 0.1 0.16 12.7 0.0 2.1 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Sigma70_r1_1 PF03979.14 gi|386002177|ref|YP_005920476.1| - 0.071 13.2 0.2 0.15 12.2 0.2 1.5 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 NAD_synthase PF02540.17 gi|386002178|ref|YP_005920477.1| - 4.1e-77 258.6 0.0 5e-77 258.3 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|386002178|ref|YP_005920477.1| - 8.9e-05 21.4 0.0 0.0096 14.8 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|386002178|ref|YP_005920477.1| - 0.00083 19.1 0.1 0.0012 18.6 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|386002178|ref|YP_005920477.1| - 0.009 15.5 0.0 0.018 14.6 0.0 1.5 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC DUF3606 PF12244.8 gi|386002178|ref|YP_005920477.1| - 0.088 12.8 0.0 1.2 9.2 0.0 2.8 4 0 0 4 4 4 0 Protein of unknown function (DUF3606) HTH_38 PF13936.6 gi|386002178|ref|YP_005920477.1| - 0.12 12.1 1.3 3.1 7.6 0.1 3.1 4 0 0 4 4 4 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|386002178|ref|YP_005920477.1| - 0.18 11.5 0.0 10 5.8 0.0 2.3 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain baeRF_family10 PF18854.1 gi|386002179|ref|YP_005920478.1| - 9.9e-26 90.7 0.4 2.4e-25 89.4 0.0 1.8 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_2 PF03464.15 gi|386002179|ref|YP_005920478.1| - 5.9e-18 65.5 0.0 9.5e-18 64.8 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|386002179|ref|YP_005920478.1| - 1.2e-14 54.7 0.3 3.5e-14 53.2 0.1 1.9 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_3 PF03465.15 gi|386002179|ref|YP_005920478.1| - 8.1e-07 29.5 0.0 2e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 3 baeRF_family2 PF18844.1 gi|386002179|ref|YP_005920478.1| - 5.2e-05 23.3 0.1 5.2e-05 23.3 0.1 2.3 3 0 0 3 3 3 1 Bacterial archaeo-eukaryotic release factor family 2 baeRF_family12 PF18856.1 gi|386002179|ref|YP_005920478.1| - 0.00045 20.8 0.0 0.0017 18.9 0.0 2.0 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 Zn-ribbon_8 PF09723.10 gi|386002179|ref|YP_005920478.1| - 0.41 10.8 4.5 1 9.5 4.4 1.7 1 1 0 1 1 1 0 Zinc ribbon domain AXE1 PF05448.12 gi|386002180|ref|YP_005920479.1| - 5.1e-09 35.2 0.0 1.7e-08 33.5 0.0 1.8 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.8 gi|386002180|ref|YP_005920479.1| - 5.2e-07 29.2 0.3 0.00013 21.4 0.1 2.1 1 1 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|386002180|ref|YP_005920479.1| - 6.8e-07 29.0 0.0 3.2e-06 26.8 0.0 1.8 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|386002180|ref|YP_005920479.1| - 0.00013 22.6 0.0 0.00018 22.2 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|386002180|ref|YP_005920479.1| - 0.00042 19.9 0.0 0.0011 18.6 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|386002180|ref|YP_005920479.1| - 0.0011 18.7 0.0 0.0052 16.4 0.0 1.8 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 gi|386002180|ref|YP_005920479.1| - 0.0023 17.8 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|386002180|ref|YP_005920479.1| - 0.065 13.2 0.0 0.16 11.9 0.0 1.6 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal PhoPQ_related PF10142.9 gi|386002180|ref|YP_005920479.1| - 0.1 11.3 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein NTP_transf_2 PF01909.23 gi|386002181|ref|YP_005920480.1| - 5.4e-16 58.7 0.3 6.1e-16 58.5 0.3 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|386002181|ref|YP_005920480.1| - 3.3e-11 43.1 0.0 3.9e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|386002181|ref|YP_005920480.1| - 0.033 14.4 0.0 0.038 14.2 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm DUF86 PF01934.17 gi|386002182|ref|YP_005920481.1| - 5.4e-22 77.9 0.1 6.2e-22 77.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 UbiA PF01040.18 gi|386002183|ref|YP_005920482.1| - 7.1e-40 136.9 25.1 9e-40 136.5 25.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Phage_holin_2_1 PF04971.12 gi|386002183|ref|YP_005920482.1| - 0.67 10.0 4.7 0.54 10.3 0.9 2.7 2 0 0 2 2 2 0 Bacteriophage P21 holin S Fig1 PF12351.8 gi|386002183|ref|YP_005920482.1| - 6.9 6.5 6.4 1.7 8.5 1.2 2.1 2 0 0 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 GPI PF06560.11 gi|386002184|ref|YP_005920483.1| - 1e-41 142.2 0.0 1.2e-41 142.0 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|386002184|ref|YP_005920483.1| - 0.00036 20.2 0.1 0.00073 19.2 0.1 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|386002184|ref|YP_005920483.1| - 0.041 13.5 0.0 0.061 12.9 0.0 1.2 1 0 0 1 1 1 0 Cupin CbiA PF01656.23 gi|386002186|ref|YP_005920485.1| - 1.1e-16 61.0 0.0 1.4e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.27 gi|386002186|ref|YP_005920485.1| - 2.3e-09 36.7 18.8 2.9e-05 23.7 5.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain ParA PF10609.9 gi|386002186|ref|YP_005920485.1| - 3.5e-09 36.5 0.1 1.8e-05 24.4 0.1 2.7 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_7 PF12838.7 gi|386002186|ref|YP_005920485.1| - 5.7e-09 36.4 8.1 0.00065 20.2 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002186|ref|YP_005920485.1| - 4.2e-08 32.9 19.0 0.0005 20.0 6.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386002186|ref|YP_005920485.1| - 4.6e-08 32.7 14.7 0.0011 19.0 4.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|386002186|ref|YP_005920485.1| - 4.8e-08 33.0 8.2 0.0013 18.8 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|386002186|ref|YP_005920485.1| - 1.2e-07 31.8 0.2 0.01 15.7 0.4 2.1 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|386002186|ref|YP_005920485.1| - 2.1e-05 24.5 0.0 0.013 15.4 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase RuvB_N PF05496.12 gi|386002186|ref|YP_005920485.1| - 0.00022 21.0 0.1 0.028 14.2 0.0 2.4 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain Fer4_21 PF14697.6 gi|386002186|ref|YP_005920485.1| - 0.00024 21.2 16.4 0.00024 21.2 16.4 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|386002186|ref|YP_005920485.1| - 0.00032 20.3 1.6 0.12 12.0 1.2 2.3 2 0 0 2 2 2 1 AAA domain Fer4_17 PF13534.6 gi|386002186|ref|YP_005920485.1| - 0.00048 20.6 7.7 0.22 12.1 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386002186|ref|YP_005920485.1| - 0.00065 20.6 12.0 0.019 15.9 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|386002186|ref|YP_005920485.1| - 0.00092 19.3 17.4 0.024 14.8 18.4 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_NifH PF00142.18 gi|386002186|ref|YP_005920485.1| - 0.001 18.6 0.0 0.2 11.0 0.0 2.3 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|386002186|ref|YP_005920485.1| - 0.0018 17.5 1.9 0.0051 16.0 1.8 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_16 PF13191.6 gi|386002186|ref|YP_005920485.1| - 0.0058 17.0 0.1 0.025 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 gi|386002186|ref|YP_005920485.1| - 0.0067 16.7 0.2 0.04 14.2 0.3 2.1 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|386002186|ref|YP_005920485.1| - 0.016 14.9 0.2 0.22 11.1 0.5 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|386002186|ref|YP_005920485.1| - 0.037 14.2 0.0 0.11 12.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|386002186|ref|YP_005920485.1| - 0.044 13.7 0.5 0.34 10.8 0.3 2.1 2 0 0 2 2 2 0 NACHT domain GTP_EFTU PF00009.27 gi|386002186|ref|YP_005920485.1| - 0.051 13.1 0.4 3.4 7.2 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_24 PF13479.6 gi|386002186|ref|YP_005920485.1| - 0.052 13.3 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain FTHFS PF01268.19 gi|386002186|ref|YP_005920485.1| - 0.054 11.7 0.2 0.11 10.7 0.0 1.5 2 0 0 2 2 2 0 Formate--tetrahydrofolate ligase MipZ PF09140.11 gi|386002186|ref|YP_005920485.1| - 0.063 12.5 0.4 0.16 11.2 0.3 1.7 2 0 0 2 2 2 0 ATPase MipZ Fer4_15 PF13459.6 gi|386002186|ref|YP_005920485.1| - 0.065 14.0 8.4 0.23 12.2 0.2 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain NB-ARC PF00931.22 gi|386002186|ref|YP_005920485.1| - 0.069 12.3 2.0 1.3 8.1 0.9 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|386002186|ref|YP_005920485.1| - 0.091 12.5 2.7 0.096 12.4 0.5 2.0 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|386002186|ref|YP_005920485.1| - 0.12 12.7 0.0 1.2 9.4 0.0 2.4 3 0 0 3 3 3 0 AAA domain Fer4_4 PF12800.7 gi|386002186|ref|YP_005920485.1| - 0.13 12.9 22.7 0.12 12.9 2.7 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain PhoH PF02562.16 gi|386002186|ref|YP_005920485.1| - 0.22 10.9 1.7 0.34 10.3 0.9 1.7 2 0 0 2 2 2 0 PhoH-like protein RNA_helicase PF00910.22 gi|386002186|ref|YP_005920485.1| - 0.22 11.9 0.0 0.51 10.8 0.0 1.8 1 1 0 1 1 1 0 RNA helicase Fer4_8 PF13183.6 gi|386002186|ref|YP_005920485.1| - 1.4 9.4 19.6 4.2 7.9 7.0 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386002186|ref|YP_005920485.1| - 2 9.6 21.4 6.4 8.0 5.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|386002186|ref|YP_005920485.1| - 2.6 8.7 13.8 2 9.0 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CbiA PF01656.23 gi|386002187|ref|YP_005920486.1| - 4.2e-15 55.9 0.0 5.1e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|386002187|ref|YP_005920486.1| - 3.4e-14 52.9 0.0 1.3e-05 24.8 0.0 2.9 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|386002187|ref|YP_005920486.1| - 2.4e-09 36.6 15.6 1.4e-05 24.7 1.4 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386002187|ref|YP_005920486.1| - 6.1e-08 32.7 4.4 6.1e-08 32.7 4.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002187|ref|YP_005920486.1| - 9.3e-07 28.7 16.0 7.1e-05 22.7 2.1 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|386002187|ref|YP_005920486.1| - 1.6e-06 28.1 12.3 0.0014 18.7 2.8 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386002187|ref|YP_005920486.1| - 5.5e-06 26.9 10.2 1.8e-05 25.2 9.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|386002187|ref|YP_005920486.1| - 6.6e-06 26.2 0.0 0.018 15.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_16 PF13484.6 gi|386002187|ref|YP_005920486.1| - 1.8e-05 25.6 4.9 0.035 15.0 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|386002187|ref|YP_005920486.1| - 5.9e-05 23.2 9.6 0.00015 21.8 8.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386002187|ref|YP_005920486.1| - 0.00014 21.8 3.2 0.00014 21.8 3.2 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386002187|ref|YP_005920486.1| - 0.0002 21.8 6.3 0.2 12.1 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386002187|ref|YP_005920486.1| - 0.0017 18.8 9.8 0.13 12.8 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|386002187|ref|YP_005920486.1| - 0.093 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|386002187|ref|YP_005920486.1| - 0.16 11.2 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Fer4_15 PF13459.6 gi|386002187|ref|YP_005920486.1| - 0.18 12.6 5.8 0.83 10.4 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain GGGtGRT PF14057.6 gi|386002187|ref|YP_005920486.1| - 0.19 10.6 0.1 0.26 10.2 0.1 1.1 1 0 0 1 1 1 0 GGGtGRT protein AAA PF00004.29 gi|386002187|ref|YP_005920486.1| - 0.2 12.1 0.0 0.43 11.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Fer4_3 PF12798.7 gi|386002187|ref|YP_005920486.1| - 0.37 11.8 21.1 0.73 10.9 6.3 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|386002187|ref|YP_005920486.1| - 1.7 9.2 10.6 1.1 9.8 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|386002187|ref|YP_005920486.1| - 4.3 8.2 14.8 8.8 7.2 4.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain MORN_2 PF07661.13 gi|386002188|ref|YP_005920487.1| - 0.08 13.2 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 MORN repeat variant DUF5616 PF18481.1 gi|386002189|ref|YP_005920488.1| - 4.7e-44 150.1 0.0 5.8e-44 149.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|386002189|ref|YP_005920488.1| - 1.3e-17 63.2 0.1 2e-17 62.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF434) UPF0181 PF03701.14 gi|386002189|ref|YP_005920488.1| - 0.059 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) Fumerase_C PF05683.12 gi|386002190|ref|YP_005920489.1| - 3.2e-28 98.5 0.0 3.8e-28 98.2 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 gi|386002191|ref|YP_005920490.1| - 5.1e-83 278.6 0.0 5.7e-83 278.4 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) DUF166 PF02593.14 gi|386002192|ref|YP_005920491.1| - 1.3e-63 214.5 0.0 1.5e-63 214.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function GATase_3 PF07685.14 gi|386002193|ref|YP_005920492.1| - 1.3e-40 139.1 0.0 1.8e-40 138.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|386002193|ref|YP_005920492.1| - 6.9e-19 68.2 0.0 1.2e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|386002193|ref|YP_005920492.1| - 3e-16 59.8 0.5 1.6e-09 37.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain Peptidase_S51 PF03575.17 gi|386002193|ref|YP_005920492.1| - 0.0039 16.9 0.0 0.0064 16.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 DUF1611 PF07755.11 gi|386002193|ref|YP_005920492.1| - 0.0099 15.2 0.0 0.02 14.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain Fer4_NifH PF00142.18 gi|386002193|ref|YP_005920492.1| - 0.073 12.5 0.0 0.22 11.0 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MobB PF03205.14 gi|386002193|ref|YP_005920492.1| - 0.16 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ResIII PF04851.15 gi|386002194|ref|YP_005920493.1| - 4.4e-21 75.6 0.0 1.1e-20 74.3 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HNH PF01844.23 gi|386002194|ref|YP_005920493.1| - 2.7e-11 43.4 2.4 7e-11 42.1 2.4 1.8 1 0 0 1 1 1 1 HNH endonuclease Helicase_C PF00271.31 gi|386002194|ref|YP_005920493.1| - 8.1e-11 42.2 0.0 2e-10 41.0 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|386002194|ref|YP_005920493.1| - 9.1e-11 41.8 0.0 1.7e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HNH_5 PF14279.6 gi|386002194|ref|YP_005920493.1| - 8.6e-10 38.3 4.3 1.3e-09 37.7 2.6 2.2 2 0 0 2 2 2 1 HNH endonuclease SWI2_SNF2 PF18766.1 gi|386002194|ref|YP_005920493.1| - 3.5e-07 30.1 0.0 5.8e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 SWI2/SNF2 ATPase AAA_34 PF13872.6 gi|386002194|ref|YP_005920493.1| - 0.0003 19.8 0.0 0.00059 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 Ada_Zn_binding PF02805.16 gi|386002194|ref|YP_005920493.1| - 0.0018 18.2 0.0 0.0049 16.9 0.0 1.8 1 0 0 1 1 1 1 Metal binding domain of Ada HNH_4 PF13395.6 gi|386002194|ref|YP_005920493.1| - 0.0057 16.5 0.0 0.019 14.9 0.0 1.9 1 0 0 1 1 1 1 HNH endonuclease ATPase PF06745.13 gi|386002194|ref|YP_005920493.1| - 0.017 14.5 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 KaiC Terminase_6 PF03237.15 gi|386002194|ref|YP_005920493.1| - 0.053 13.2 0.0 0.15 11.7 0.0 1.8 2 0 0 2 2 2 0 Terminase-like family Endonuclease_7 PF02945.15 gi|386002194|ref|YP_005920493.1| - 0.077 12.9 0.7 0.24 11.4 0.7 1.8 1 0 0 1 1 1 0 Recombination endonuclease VII IstB_IS21 PF01695.17 gi|386002194|ref|YP_005920493.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein FMN_red PF03358.15 gi|386002195|ref|YP_005920494.1| - 1.3e-32 112.7 0.0 1.6e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|386002195|ref|YP_005920494.1| - 2.2e-10 40.6 0.0 2.8e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.9 gi|386002195|ref|YP_005920494.1| - 0.03 14.1 0.1 0.04 13.7 0.1 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) DNA_pol_B PF00136.21 gi|386002196|ref|YP_005920495.1| - 6.2e-103 345.0 0.0 7.9e-103 344.6 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|386002196|ref|YP_005920495.1| - 2.9e-42 145.0 0.0 1.7e-41 142.5 0.0 1.9 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|386002196|ref|YP_005920495.1| - 0.0024 17.6 0.0 0.0041 16.8 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|386002196|ref|YP_005920495.1| - 0.06 13.3 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 RNase_H superfamily WIYLD PF10440.9 gi|386002196|ref|YP_005920495.1| - 0.18 11.6 0.0 0.93 9.3 0.1 2.2 1 1 1 2 2 2 0 Ubiquitin-binding WIYLD domain Pentapeptide_3 PF13576.6 gi|386002199|ref|YP_005920498.1| - 4.6e-57 190.0 141.6 2.9e-09 36.9 7.6 9.9 3 3 8 11 11 11 11 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|386002199|ref|YP_005920498.1| - 0.00045 19.8 42.1 0.0017 18.0 0.5 12.7 6 4 6 12 12 12 4 Pentapeptide repeats (8 copies) TMEMspv1-c74-12 PF11044.8 gi|386002199|ref|YP_005920498.1| - 0.3 11.1 2.0 0.78 9.8 2.0 1.7 1 0 0 1 1 1 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Peptidase_M22 PF00814.25 gi|386002200|ref|YP_005920499.1| - 6.3e-89 298.3 0.3 7.7e-89 298.0 0.3 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|386002200|ref|YP_005920499.1| - 0.036 13.7 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 Carbamoyltransferase N-terminus PPE PF00823.19 gi|386002200|ref|YP_005920499.1| - 0.041 14.0 0.2 7.2 6.7 0.0 2.2 2 0 0 2 2 2 0 PPE family GARS_A PF01071.19 gi|386002201|ref|YP_005920500.1| - 6.4e-60 202.3 0.0 5.9e-59 199.1 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|386002201|ref|YP_005920500.1| - 9e-24 84.1 0.0 2.2e-23 82.9 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|386002201|ref|YP_005920500.1| - 2.1e-22 79.2 1.4 2.8e-22 78.8 0.2 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain Gln-synt_C PF00120.24 gi|386002202|ref|YP_005920501.1| - 6.3e-134 446.3 0.0 7.4e-134 446.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|386002202|ref|YP_005920501.1| - 7.4e-31 105.7 0.0 1.3e-30 105.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|386002202|ref|YP_005920501.1| - 0.0057 16.5 0.0 0.016 15.0 0.0 1.8 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain Mrr_N PF14338.6 gi|386002203|ref|YP_005920502.1| - 0.026 14.6 0.4 0.4 10.8 0.0 2.1 1 1 1 2 2 2 0 Mrr N-terminal domain TBCA PF02970.16 gi|386002203|ref|YP_005920502.1| - 0.12 12.7 1.6 0.34 11.3 0.3 1.9 1 1 1 2 2 2 0 Tubulin binding cofactor A Sec15 PF04091.12 gi|386002203|ref|YP_005920502.1| - 0.15 11.4 0.5 0.64 9.4 0.2 1.8 1 1 1 2 2 2 0 Exocyst complex subunit Sec15-like AP_endonuc_2 PF01261.24 gi|386002204|ref|YP_005920503.1| - 1.9e-33 115.7 0.0 2.2e-33 115.5 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel NAGPA PF09992.9 gi|386002204|ref|YP_005920503.1| - 0.14 12.4 0.0 0.22 11.7 0.0 1.2 1 0 0 1 1 1 0 Phosphodiester glycosidase DUF2878 PF11086.8 gi|386002205|ref|YP_005920504.1| - 6.7e-06 26.4 9.6 0.0056 16.9 0.7 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF2878) Response_reg PF00072.24 gi|386002206|ref|YP_005920505.1| - 1.3e-20 73.7 0.0 1.5e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Rad10 PF03834.14 gi|386002206|ref|YP_005920505.1| - 0.11 12.6 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) TORC_M PF12885.7 gi|386002206|ref|YP_005920505.1| - 0.14 12.1 0.0 0.27 11.2 0.0 1.4 2 0 0 2 2 2 0 Transducer of regulated CREB activity middle domain Radical_SAM PF04055.21 gi|386002207|ref|YP_005920506.1| - 6.5e-21 75.4 0.1 5.2e-20 72.5 0.1 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|386002207|ref|YP_005920506.1| - 1.3e-17 63.8 0.0 2.6e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation NosD PF05048.13 gi|386002208|ref|YP_005920507.1| - 1.4e-17 63.8 15.4 1.9e-17 63.4 15.4 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386002208|ref|YP_005920507.1| - 1.5e-09 37.9 23.1 2.8e-09 37.0 23.0 1.5 1 1 0 1 1 1 1 Right handed beta helix region DUF1565 PF07602.11 gi|386002208|ref|YP_005920507.1| - 0.001 18.4 13.6 0.06 12.7 13.6 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) KOW PF00467.29 gi|386002208|ref|YP_005920507.1| - 0.14 12.1 0.1 0.29 11.1 0.1 1.6 1 0 0 1 1 1 0 KOW motif Pectate_lyase_3 PF12708.7 gi|386002208|ref|YP_005920507.1| - 1.6 8.5 12.0 4.8 7.0 12.0 2.0 1 1 0 1 1 1 0 Pectate lyase superfamily protein CSD PF00313.22 gi|386002209|ref|YP_005920508.1| - 3.8e-16 58.7 0.4 4.1e-16 58.6 0.4 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|386002209|ref|YP_005920508.1| - 0.012 15.3 1.0 0.022 14.5 1.0 1.5 1 1 0 1 1 1 0 Ribonuclease B OB domain PHP_C PF13263.6 gi|386002210|ref|YP_005920509.1| - 3e-16 58.9 0.7 4.3e-16 58.4 0.1 1.6 2 0 0 2 2 2 1 PHP-associated Aconitase PF00330.20 gi|386002211|ref|YP_005920510.1| - 1.4e-98 331.0 0.5 1.8e-96 324.0 0.5 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|386002211|ref|YP_005920510.1| - 0.024 13.3 0.0 0.037 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Citrate_synt PF00285.21 gi|386002212|ref|YP_005920511.1| - 1.7e-21 76.7 0.0 1.3e-20 73.8 0.0 2.3 1 1 0 1 1 1 1 Citrate synthase, C-terminal domain Ligase_CoA PF00549.19 gi|386002212|ref|YP_005920511.1| - 2.1e-13 50.4 0.1 4.8e-13 49.2 0.1 1.6 1 0 0 1 1 1 1 CoA-ligase CoA_binding PF02629.19 gi|386002212|ref|YP_005920511.1| - 1.9e-10 41.3 0.0 6.9e-10 39.5 0.0 2.0 2 0 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.6 gi|386002212|ref|YP_005920511.1| - 5.7e-05 22.9 0.1 0.0013 18.5 0.0 2.3 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain Citrate_bind PF16114.5 gi|386002213|ref|YP_005920512.1| - 6.4e-89 296.2 0.0 8.5e-89 295.7 0.0 1.2 1 0 0 1 1 1 1 ATP citrate lyase citrate-binding ATP-grasp_2 PF08442.10 gi|386002213|ref|YP_005920512.1| - 1e-08 35.0 0.0 2e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain PrmA PF06325.13 gi|386002214|ref|YP_005920513.1| - 0.0012 18.3 0.0 0.0018 17.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|386002214|ref|YP_005920513.1| - 0.026 14.1 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Pentapeptide PF00805.22 gi|386002215|ref|YP_005920514.1| - 1.2e-24 85.5 24.2 6.2e-10 38.5 5.6 4.4 2 1 2 4 4 4 3 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|386002215|ref|YP_005920514.1| - 7.4e-16 58.1 0.9 9.9e-11 41.7 0.8 2.5 2 1 1 3 3 3 2 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|386002215|ref|YP_005920514.1| - 6e-11 42.3 4.7 6e-05 23.1 3.6 3.3 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) DUF2254 PF10011.9 gi|386002215|ref|YP_005920514.1| - 8.1e-09 34.8 7.5 1.1e-08 34.4 7.5 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) DUF5412 PF17428.2 gi|386002215|ref|YP_005920514.1| - 0.87 9.5 0.0 0.87 9.5 0.0 2.3 3 0 0 3 3 3 0 Family of unknown function (DUF5412) DUF3307 PF11750.8 gi|386002216|ref|YP_005920515.1| - 2.1e-23 82.8 2.1 4.9e-23 81.6 2.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3307) SLATT_3 PF18184.1 gi|386002216|ref|YP_005920515.1| - 0.5 10.5 1.2 1.2 9.3 0.1 2.0 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 Dpy19 PF10034.9 gi|386002216|ref|YP_005920515.1| - 6 4.9 8.5 0.2 9.8 0.4 2.0 2 0 0 2 2 2 0 Q-cell neuroblast polarisation Sigma70_r4 PF04545.16 gi|386002217|ref|YP_005920516.1| - 0.0006 19.3 0.1 0.0018 17.8 0.1 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|386002217|ref|YP_005920516.1| - 0.0028 17.3 0.0 0.0052 16.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 LPG_synthase_TM PF03706.13 gi|386002218|ref|YP_005920517.1| - 1.3e-38 133.3 42.1 1.5e-38 133.0 42.1 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF5350 PF17299.2 gi|386002219|ref|YP_005920518.1| - 1.2e-27 96.1 5.0 1.3e-27 96.0 5.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5350) ThiI PF02568.14 gi|386002220|ref|YP_005920519.1| - 4.7e-51 173.2 0.0 5.9e-51 172.9 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|386002220|ref|YP_005920519.1| - 8.5e-18 64.8 0.0 1.2e-17 64.4 0.0 1.2 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|386002220|ref|YP_005920519.1| - 9.4e-05 22.0 0.0 0.25 10.8 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|386002220|ref|YP_005920519.1| - 0.24 10.2 0.0 0.51 9.1 0.0 1.5 2 0 0 2 2 2 0 tRNA methyl transferase HTH_5 PF01022.20 gi|386002223|ref|YP_005920522.1| - 2.5e-15 56.1 0.5 2e-14 53.2 0.0 2.4 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|386002223|ref|YP_005920522.1| - 3.2e-10 39.9 0.1 6.6e-10 38.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|386002223|ref|YP_005920522.1| - 0.017 15.0 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|386002223|ref|YP_005920522.1| - 0.044 13.5 0.0 0.79 9.5 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain RP-C PF03428.13 gi|386002223|ref|YP_005920522.1| - 0.045 13.4 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_34 PF13601.6 gi|386002223|ref|YP_005920522.1| - 0.068 13.4 0.0 0.18 12.0 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_CodY PF08222.11 gi|386002223|ref|YP_005920522.1| - 0.086 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain MarR PF01047.22 gi|386002223|ref|YP_005920522.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.7 2 0 0 2 2 2 0 MarR family Penicillinase_R PF03965.16 gi|386002223|ref|YP_005920522.1| - 0.13 12.6 0.0 0.2 12.0 0.0 1.4 1 1 0 1 1 1 0 Penicillinase repressor ArsP_1 PF03773.13 gi|386002224|ref|YP_005920523.1| - 4.8e-68 229.5 21.0 5.9e-68 229.2 21.0 1.1 1 0 0 1 1 1 1 Predicted permease DsbD PF02683.15 gi|386002226|ref|YP_005920525.1| - 3.4e-14 53.2 14.2 4.8e-14 52.8 14.2 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Rhodanese PF00581.20 gi|386002227|ref|YP_005920526.1| - 3.5e-17 62.9 0.0 3.1e-07 30.9 0.0 2.4 2 0 0 2 2 2 2 Rhodanese-like domain Thioredoxin_3 PF13192.6 gi|386002228|ref|YP_005920527.1| - 3.3e-27 94.3 1.3 3.8e-27 94.1 1.3 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|386002228|ref|YP_005920527.1| - 0.00061 20.0 0.2 0.017 15.3 0.0 1.9 1 1 1 2 2 2 2 Thioredoxin Glutaredoxin PF00462.24 gi|386002228|ref|YP_005920527.1| - 0.0025 18.0 0.2 0.0038 17.4 0.2 1.4 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.20 gi|386002228|ref|YP_005920527.1| - 0.0071 16.3 0.0 0.0075 16.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Ribosomal_L17 PF01196.19 gi|386002228|ref|YP_005920527.1| - 0.095 13.6 0.1 0.11 13.4 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L17 DGC PF08859.11 gi|386002229|ref|YP_005920528.1| - 3.9e-32 110.5 0.7 4.8e-32 110.2 0.7 1.1 1 0 0 1 1 1 1 DGC domain Methyltransf_31 PF13847.6 gi|386002230|ref|YP_005920529.1| - 1.7e-39 135.1 0.0 2.5e-39 134.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386002230|ref|YP_005920529.1| - 8.1e-24 84.2 0.0 1.5e-23 83.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386002230|ref|YP_005920529.1| - 5.5e-23 81.4 0.0 1.1e-22 80.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386002230|ref|YP_005920529.1| - 1.1e-19 70.7 0.0 1.8e-19 70.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|386002230|ref|YP_005920529.1| - 5.4e-13 49.5 0.0 8.4e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386002230|ref|YP_005920529.1| - 9.4e-11 41.8 0.0 1.3e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|386002230|ref|YP_005920529.1| - 2.9e-10 40.2 0.0 5.1e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|386002230|ref|YP_005920529.1| - 1.8e-09 37.4 0.1 2.4e-09 37.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|386002230|ref|YP_005920529.1| - 8.5e-08 31.9 0.0 1.3e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|386002230|ref|YP_005920529.1| - 1.5e-06 28.3 0.0 3.1e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|386002230|ref|YP_005920529.1| - 5.6e-06 26.4 0.0 8.4e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|386002230|ref|YP_005920529.1| - 1.5e-05 24.5 0.0 2e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.18 gi|386002230|ref|YP_005920529.1| - 3.4e-05 23.6 0.0 5.1e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.17 gi|386002230|ref|YP_005920529.1| - 0.0016 17.9 0.0 0.0042 16.6 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_3 PF01596.17 gi|386002230|ref|YP_005920529.1| - 0.011 14.9 0.0 0.018 14.2 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase ADH_zinc_N PF00107.26 gi|386002230|ref|YP_005920529.1| - 0.039 13.9 0.1 0.1 12.6 0.1 1.7 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_18 PF12847.7 gi|386002230|ref|YP_005920529.1| - 0.041 13.8 0.0 0.061 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|386002230|ref|YP_005920529.1| - 0.042 14.0 0.0 0.092 12.8 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase Fibrillarin PF01269.17 gi|386002230|ref|YP_005920529.1| - 0.064 12.4 0.0 0.39 9.8 0.0 1.9 2 0 0 2 2 2 0 Fibrillarin GidB PF02527.15 gi|386002230|ref|YP_005920529.1| - 0.14 11.4 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_16 PF10294.9 gi|386002230|ref|YP_005920529.1| - 0.15 11.8 0.1 0.24 11.1 0.1 1.3 1 0 0 1 1 1 0 Lysine methyltransferase DOT1 PF08123.13 gi|386002230|ref|YP_005920529.1| - 0.18 11.3 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 GCD14 PF08704.10 gi|386002230|ref|YP_005920529.1| - 0.21 11.2 0.0 0.35 10.5 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit LMWPc PF01451.21 gi|386002231|ref|YP_005920530.1| - 3.2e-16 60.0 0.1 4.4e-16 59.6 0.1 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Fer4_13 PF13370.6 gi|386002232|ref|YP_005920531.1| - 3.5e-14 53.1 2.3 4.6e-14 52.7 2.3 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|386002232|ref|YP_005920531.1| - 1.9e-13 50.9 2.9 2.3e-13 50.7 2.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_10 PF13237.6 gi|386002232|ref|YP_005920531.1| - 2.9e-05 24.1 3.0 8.1e-05 22.7 3.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386002232|ref|YP_005920531.1| - 2.9e-05 23.7 5.7 0.00024 20.8 1.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386002232|ref|YP_005920531.1| - 0.00046 21.1 2.0 0.0032 18.4 0.2 2.1 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|386002232|ref|YP_005920531.1| - 0.0011 19.1 5.1 0.043 14.0 2.0 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386002232|ref|YP_005920531.1| - 0.0016 19.0 0.7 0.0025 18.3 0.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386002232|ref|YP_005920531.1| - 0.0024 18.4 2.6 0.0078 16.8 2.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386002232|ref|YP_005920531.1| - 0.0072 16.4 3.8 0.016 15.4 3.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386002232|ref|YP_005920531.1| - 0.012 16.1 1.6 0.018 15.5 1.6 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386002232|ref|YP_005920531.1| - 0.032 14.7 1.1 0.032 14.7 1.1 2.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386002232|ref|YP_005920531.1| - 0.048 13.8 1.1 0.048 13.8 1.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Nitro_FeMo-Co PF02579.17 gi|386002232|ref|YP_005920531.1| - 0.15 12.4 0.0 0.18 12.1 0.0 1.1 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor Fer4_6 PF12837.7 gi|386002232|ref|YP_005920531.1| - 0.23 11.6 5.5 0.43 10.7 0.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DsrH PF04077.12 gi|386002233|ref|YP_005920532.1| - 3.6e-07 30.2 0.0 4.8e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 DsrH like protein DrsE PF02635.15 gi|386002234|ref|YP_005920533.1| - 8.4e-13 48.7 0.0 1e-12 48.4 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.12 gi|386002234|ref|YP_005920533.1| - 0.083 13.0 0.0 0.2 11.8 0.0 1.7 1 1 0 1 1 1 0 DsrH like protein DrsE PF02635.15 gi|386002235|ref|YP_005920534.1| - 2.8e-16 59.9 0.0 3.2e-16 59.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family FeS PF04060.13 gi|386002236|ref|YP_005920535.1| - 9.6e-12 44.4 0.5 2e-11 43.3 0.5 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster HTH_20 PF12840.7 gi|386002236|ref|YP_005920535.1| - 5.1e-07 29.7 0.0 2e-06 27.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|386002236|ref|YP_005920535.1| - 3e-06 27.0 0.0 6.3e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family YhfH PF14149.6 gi|386002236|ref|YP_005920535.1| - 0.0071 16.3 0.2 0.014 15.4 0.2 1.5 1 0 0 1 1 1 1 YhfH-like protein AAA_assoc_C PF09821.9 gi|386002236|ref|YP_005920535.1| - 0.0073 16.8 0.1 0.075 13.6 0.0 2.2 2 1 0 2 2 2 1 C-terminal AAA-associated domain HTH_12 PF08461.10 gi|386002236|ref|YP_005920535.1| - 0.035 14.0 0.0 0.084 12.8 0.0 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain TBP PF00352.21 gi|386002236|ref|YP_005920535.1| - 0.15 12.1 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Transcription factor TFIID (or TATA-binding protein, TBP) DsbD PF02683.15 gi|386002237|ref|YP_005920536.1| - 1.2e-21 77.6 10.7 1.9e-21 77.0 10.7 1.4 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|386002237|ref|YP_005920536.1| - 2.5e-09 37.4 20.4 2e-06 27.9 3.4 2.9 2 1 0 2 2 2 2 Cytochrome C biogenesis protein transmembrane region AhpC-TSA PF00578.21 gi|386002237|ref|YP_005920536.1| - 7.6e-07 29.1 0.0 2.3e-06 27.6 0.0 1.8 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|386002237|ref|YP_005920536.1| - 6e-06 26.0 0.0 1.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Redoxin DUF443 PF04276.12 gi|386002237|ref|YP_005920536.1| - 0.067 13.0 2.5 1.4 8.7 0.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF443) MpPF26 PF07666.11 gi|386002237|ref|YP_005920536.1| - 0.1 12.7 0.3 0.1 12.7 0.3 2.5 3 1 0 3 3 3 0 M penetrans paralogue family 26 DUF4538 PF15061.6 gi|386002238|ref|YP_005920537.1| - 0.042 13.6 0.2 0.068 12.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4538) HTH_5 PF01022.20 gi|386002239|ref|YP_005920538.1| - 1.7e-05 24.6 0.6 4.3e-05 23.3 0.6 1.8 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|386002239|ref|YP_005920538.1| - 5.2e-05 23.2 0.3 0.0004 20.4 0.0 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain SBF PF01758.16 gi|386002240|ref|YP_005920539.1| - 2.2e-63 213.5 15.4 2.2e-63 213.5 15.4 2.2 2 1 0 2 2 2 1 Sodium Bile acid symporter family KASH PF10541.9 gi|386002240|ref|YP_005920539.1| - 0.4 11.0 0.1 0.4 11.0 0.1 3.0 4 0 0 4 4 4 0 Nuclear envelope localisation domain Rhodanese PF00581.20 gi|386002241|ref|YP_005920540.1| - 2.4e-14 53.7 0.0 6.3e-09 36.3 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain HTH_20 PF12840.7 gi|386002243|ref|YP_005920542.1| - 1.7e-18 66.4 0.4 5e-16 58.5 0.2 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|386002243|ref|YP_005920542.1| - 3.3e-18 65.3 0.3 5.9e-18 64.5 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|386002243|ref|YP_005920542.1| - 2.8e-05 23.9 0.0 6e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|386002243|ref|YP_005920542.1| - 0.00045 20.0 0.1 0.072 12.8 0.0 2.2 1 1 0 2 2 2 1 Domain of unknown function (DUF4423) DUF742 PF05331.11 gi|386002243|ref|YP_005920542.1| - 0.0016 18.2 0.1 0.002 18.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_27 PF13463.6 gi|386002243|ref|YP_005920542.1| - 0.0018 18.8 0.2 0.0045 17.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|386002243|ref|YP_005920542.1| - 0.0066 16.2 0.9 0.023 14.5 0.2 2.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|386002243|ref|YP_005920542.1| - 0.015 14.9 0.2 0.04 13.5 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|386002243|ref|YP_005920542.1| - 0.027 14.4 0.2 0.07 13.0 0.1 1.8 2 0 0 2 2 2 0 MarR family PaaX PF07848.12 gi|386002243|ref|YP_005920542.1| - 0.028 14.6 0.4 0.085 13.1 0.2 1.9 1 1 1 2 2 2 0 PaaX-like protein HTH_45 PF14947.6 gi|386002243|ref|YP_005920542.1| - 0.043 13.8 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.20 gi|386002243|ref|YP_005920542.1| - 0.05 13.9 0.1 0.11 12.9 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|386002243|ref|YP_005920542.1| - 0.082 12.7 0.2 1.7 8.4 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain Rhodanese PF00581.20 gi|386002244|ref|YP_005920543.1| - 6.2e-15 55.6 0.0 4e-08 33.7 0.0 2.3 2 0 0 2 2 2 2 Rhodanese-like domain DUF2335 PF10097.9 gi|386002244|ref|YP_005920543.1| - 0.061 13.3 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2335) DUF997 PF06196.12 gi|386002246|ref|YP_005920545.1| - 6 6.9 7.1 1.3 9.1 0.5 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF997) Ni_hydr_CYTB PF01292.20 gi|386002247|ref|YP_005920546.1| - 1.8 8.1 9.0 0.12 11.9 2.0 2.3 2 1 1 3 3 3 0 Prokaryotic cytochrome b561 Exo_endo_phos PF03372.23 gi|386002248|ref|YP_005920547.1| - 1.3e-15 57.6 0.0 2e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|386002248|ref|YP_005920547.1| - 0.0073 16.1 0.0 0.43 10.4 0.0 2.1 2 0 0 2 2 2 2 Endonuclease-reverse transcriptase ABC_tran PF00005.27 gi|386002249|ref|YP_005920548.1| - 4e-31 108.4 0.0 5.7e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386002249|ref|YP_005920548.1| - 6.7e-10 39.3 1.0 2.5e-05 24.2 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|386002249|ref|YP_005920548.1| - 1.7e-05 25.1 0.3 8.5e-05 22.8 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|386002249|ref|YP_005920548.1| - 1.8e-05 25.2 0.0 3.1e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|386002249|ref|YP_005920548.1| - 4.1e-05 23.1 0.4 0.0017 17.8 0.4 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|386002249|ref|YP_005920548.1| - 8.4e-05 23.2 0.1 0.00012 22.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|386002249|ref|YP_005920548.1| - 0.00021 21.2 0.1 0.00044 20.1 0.1 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|386002249|ref|YP_005920548.1| - 0.00048 19.8 0.1 0.00096 18.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|386002249|ref|YP_005920548.1| - 0.0044 17.4 0.2 0.046 14.1 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|386002249|ref|YP_005920548.1| - 0.0062 16.3 0.0 0.0096 15.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|386002249|ref|YP_005920548.1| - 0.0075 15.1 0.6 1.9 7.2 0.1 3.0 2 2 0 2 2 2 1 Predicted ATPase of the ABC class Mg_chelatase PF01078.21 gi|386002249|ref|YP_005920548.1| - 0.013 14.9 0.0 0.027 13.8 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|386002249|ref|YP_005920548.1| - 0.017 14.3 0.3 0.035 13.3 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain TniB PF05621.11 gi|386002249|ref|YP_005920548.1| - 0.021 14.2 0.6 1.2 8.5 0.1 2.2 1 1 0 2 2 2 0 Bacterial TniB protein AAA_5 PF07728.14 gi|386002249|ref|YP_005920548.1| - 0.03 14.3 0.1 0.57 10.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|386002249|ref|YP_005920548.1| - 0.033 14.4 0.3 0.1 12.8 0.1 1.9 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|386002249|ref|YP_005920548.1| - 0.037 13.9 0.4 0.16 11.9 0.1 1.9 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.6 gi|386002249|ref|YP_005920548.1| - 0.046 14.0 0.1 0.71 10.1 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|386002249|ref|YP_005920548.1| - 0.055 13.4 0.2 0.11 12.4 0.1 1.6 2 0 0 2 2 1 0 RsgA GTPase MeaB PF03308.16 gi|386002249|ref|YP_005920548.1| - 0.057 12.4 0.0 0.098 11.6 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|386002249|ref|YP_005920548.1| - 0.062 12.9 0.1 0.14 11.8 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|386002249|ref|YP_005920548.1| - 0.077 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|386002249|ref|YP_005920548.1| - 0.087 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|386002249|ref|YP_005920548.1| - 0.11 12.4 0.5 0.26 11.2 0.5 1.9 1 1 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|386002249|ref|YP_005920548.1| - 0.11 12.8 0.5 0.22 11.8 0.5 1.9 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|386002249|ref|YP_005920548.1| - 0.13 12.2 0.1 0.25 11.2 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 gi|386002249|ref|YP_005920548.1| - 0.13 11.9 0.1 0.26 10.8 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.20 gi|386002249|ref|YP_005920548.1| - 0.13 11.4 0.0 0.17 11.0 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit TsaE PF02367.17 gi|386002249|ref|YP_005920548.1| - 0.15 12.1 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_13 PF13166.6 gi|386002249|ref|YP_005920548.1| - 0.27 9.8 0.2 2.4 6.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain FecCD PF01032.18 gi|386002250|ref|YP_005920549.1| - 2.2e-95 319.3 39.7 2.8e-95 318.9 39.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|386002250|ref|YP_005920549.1| - 0.0011 18.6 23.0 0.0011 18.6 23.0 1.7 1 1 0 1 1 1 1 ABC 3 transport family Metallophos_2 PF12850.7 gi|386002253|ref|YP_005920552.1| - 2.7e-13 50.4 0.0 6.8e-13 49.1 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|386002253|ref|YP_005920552.1| - 6.1e-12 45.4 0.0 6.3e-11 42.1 0.0 2.1 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|386002253|ref|YP_005920552.1| - 9.5e-12 45.8 0.0 2.4e-11 44.5 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Penicillinase_R PF03965.16 gi|386002254|ref|YP_005920553.1| - 0.072 13.5 0.0 0.1 12.9 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_56 PF18662.1 gi|386002254|ref|YP_005920553.1| - 0.17 12.0 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 Cch helix turn helix domain DUF2207 PF09972.9 gi|386002255|ref|YP_005920554.1| - 1.2e-82 278.2 1.1 1.8e-82 277.7 1.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) 2TM PF13239.6 gi|386002255|ref|YP_005920554.1| - 0.79 10.1 8.7 0.15 12.4 4.3 2.1 2 0 0 2 2 2 0 2TM domain LemA PF04011.12 gi|386002256|ref|YP_005920555.1| - 7.7e-34 116.7 0.1 1e-33 116.3 0.1 1.1 1 0 0 1 1 1 1 LemA family DUF948 PF06103.11 gi|386002256|ref|YP_005920555.1| - 0.011 16.0 0.0 2.8 8.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Col_cuticle_N PF01484.17 gi|386002256|ref|YP_005920555.1| - 0.069 13.2 1.2 0.14 12.2 0.1 2.0 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain DUF3552 PF12072.8 gi|386002256|ref|YP_005920555.1| - 0.1 12.0 0.2 0.16 11.4 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Nbl1_Borealin_N PF10444.9 gi|386002256|ref|YP_005920555.1| - 0.2 11.3 2.5 15 5.3 0.0 3.0 3 0 0 3 3 3 0 Nbl1 / Borealin N terminal AIRS_C PF02769.22 gi|386002258|ref|YP_005920557.1| - 2.1e-39 135.1 0.0 1.5e-19 70.7 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|386002258|ref|YP_005920557.1| - 4.1e-35 120.3 2.5 1.5e-16 60.8 0.9 2.6 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|386002258|ref|YP_005920557.1| - 8.3e-12 45.5 0.0 1.6e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GATase_5 PF13507.6 gi|386002259|ref|YP_005920558.1| - 1.4e-52 178.4 0.0 1.6e-52 178.2 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|386002259|ref|YP_005920558.1| - 2.3e-09 37.3 0.0 3.8e-09 36.6 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|386002259|ref|YP_005920558.1| - 1.4e-08 34.6 0.0 3.4e-08 33.3 0.0 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|386002259|ref|YP_005920558.1| - 4.4e-08 33.1 0.0 7.2e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family SNO PF01174.19 gi|386002259|ref|YP_005920558.1| - 5.8e-05 23.0 0.0 9.8e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|386002259|ref|YP_005920558.1| - 0.0029 17.4 0.0 0.0045 16.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 PurS PF02700.14 gi|386002260|ref|YP_005920559.1| - 1.4e-07 31.5 0.0 0.016 15.4 0.0 2.1 2 0 0 2 2 2 2 Phosphoribosylformylglycinamidine (FGAM) synthase Helicase_C PF00271.31 gi|386002261|ref|YP_005920560.1| - 1.1e-24 86.9 0.0 4.1e-21 75.4 0.0 2.4 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|386002261|ref|YP_005920560.1| - 4.5e-23 82.2 0.0 8.3e-23 81.3 0.0 1.5 1 0 0 1 1 1 1 ERCC4 domain DEAD PF00270.29 gi|386002261|ref|YP_005920560.1| - 7.5e-18 64.9 0.0 2e-17 63.6 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|386002261|ref|YP_005920560.1| - 2.1e-17 63.7 0.0 3.8e-17 62.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|386002261|ref|YP_005920560.1| - 8.9e-12 44.9 0.0 3.1e-11 43.2 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|386002261|ref|YP_005920560.1| - 4.1e-11 43.3 0.0 6.4e-10 39.5 0.0 2.8 3 0 0 3 3 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|386002261|ref|YP_005920560.1| - 3.8e-08 32.8 0.2 3e-06 26.8 0.1 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|386002261|ref|YP_005920560.1| - 0.0024 18.1 0.0 0.012 15.9 0.0 2.1 1 1 0 1 1 1 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|386002261|ref|YP_005920560.1| - 0.0038 17.8 0.2 0.023 15.3 0.0 2.4 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold DUF2075 PF09848.9 gi|386002261|ref|YP_005920560.1| - 0.0094 15.2 0.0 0.02 14.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) HHH_8 PF14716.6 gi|386002261|ref|YP_005920560.1| - 0.028 14.8 0.1 4.1 7.8 0.0 3.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain ERCC3_RAD25_C PF16203.5 gi|386002261|ref|YP_005920560.1| - 0.038 13.2 0.1 0.067 12.4 0.1 1.3 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase Csm1_B PF18211.1 gi|386002263|ref|YP_005920562.1| - 0.077 12.8 0.0 2.9 7.8 0.0 2.2 2 0 0 2 2 2 0 Csm1 subunit domain B DNA_pol_B PF00136.21 gi|386002265|ref|YP_005920564.1| - 1.5e-14 53.6 0.0 2.6e-10 39.6 0.0 3.0 2 1 0 2 2 2 2 DNA polymerase family B DUF772 PF05598.11 gi|386002266|ref|YP_005920565.1| - 6.2e-22 77.4 0.1 1.5e-21 76.2 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|386002266|ref|YP_005920565.1| - 2.1e-14 53.7 0.4 5.3e-14 52.4 0.4 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|386002266|ref|YP_005920565.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease CEP209_CC5 PF16574.5 gi|386002267|ref|YP_005920566.1| - 0.13 12.4 0.3 0.18 12.0 0.3 1.3 1 1 0 1 1 1 0 Coiled-coil region of centrosome protein CE290 Translin PF01997.16 gi|386002268|ref|YP_005920567.1| - 2.1e-05 24.6 0.0 0.00023 21.2 0.0 2.0 1 1 0 1 1 1 1 Translin family BMFP PF04380.13 gi|386002268|ref|YP_005920567.1| - 0.0021 18.5 4.2 0.0092 16.4 0.4 2.3 2 0 0 2 2 2 1 Membrane fusogenic activity UBA_4 PF14555.6 gi|386002268|ref|YP_005920567.1| - 0.043 13.6 0.0 0.14 12.0 0.0 1.9 2 0 0 2 2 2 0 UBA-like domain AP_endonuc_2 PF01261.24 gi|386002269|ref|YP_005920568.1| - 4.6e-28 98.1 0.0 5.6e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel RNA_binding PF01877.17 gi|386002270|ref|YP_005920569.1| - 1.2e-13 51.3 0.0 9.7e-13 48.4 0.0 1.9 1 1 0 1 1 1 1 RNA binding eRF1_2 PF03464.15 gi|386002271|ref|YP_005920570.1| - 5.5e-43 146.5 0.0 9.7e-43 145.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|386002271|ref|YP_005920570.1| - 1.9e-31 108.9 0.0 5.7e-31 107.3 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|386002271|ref|YP_005920570.1| - 4.5e-13 49.6 0.1 7.5e-13 48.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 gi|386002271|ref|YP_005920570.1| - 5.6e-12 46.1 0.0 1.2e-11 45.0 0.0 1.5 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_1 PF03463.15 gi|386002271|ref|YP_005920570.1| - 8.6e-12 45.2 0.0 2.1e-11 43.9 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 1 baeRF_family12 PF18856.1 gi|386002271|ref|YP_005920570.1| - 0.058 14.0 0.0 0.12 13.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 12 PNP_UDP_1 PF01048.20 gi|386002272|ref|YP_005920571.1| - 1e-40 139.4 0.8 1.1e-40 139.3 0.8 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Methyltransf_11 PF08241.12 gi|386002273|ref|YP_005920572.1| - 4.7e-22 78.4 0.0 7.2e-22 77.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386002273|ref|YP_005920572.1| - 7.7e-20 71.4 0.0 1.1e-19 70.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386002273|ref|YP_005920572.1| - 2.8e-17 62.9 0.0 3.5e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002273|ref|YP_005920572.1| - 1.1e-12 48.5 0.0 1.7e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386002273|ref|YP_005920572.1| - 1.2e-11 44.8 0.0 1.6e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|386002273|ref|YP_005920572.1| - 2.4e-08 33.7 0.0 3.3e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|386002273|ref|YP_005920572.1| - 2.3e-07 30.4 0.0 3e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|386002273|ref|YP_005920572.1| - 1e-05 25.2 0.0 1.4e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.11 gi|386002273|ref|YP_005920572.1| - 3.7e-05 23.4 0.0 5.1e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|386002273|ref|YP_005920572.1| - 6.7e-05 22.9 0.0 9.9e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|386002273|ref|YP_005920572.1| - 0.00045 19.7 0.0 0.0006 19.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|386002273|ref|YP_005920572.1| - 0.0011 18.3 0.0 0.0016 17.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|386002273|ref|YP_005920572.1| - 0.0037 16.3 0.0 0.0046 15.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) RrnaAD PF00398.20 gi|386002273|ref|YP_005920572.1| - 0.0081 15.3 0.0 0.011 14.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DREV PF05219.12 gi|386002273|ref|YP_005920572.1| - 0.023 13.8 0.0 0.031 13.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_8 PF05148.15 gi|386002273|ref|YP_005920572.1| - 0.048 13.5 0.0 0.077 12.8 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase TPMT PF05724.11 gi|386002273|ref|YP_005920572.1| - 0.074 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.13 gi|386002273|ref|YP_005920572.1| - 0.16 11.3 0.0 0.21 11.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) N2227 PF07942.12 gi|386002273|ref|YP_005920572.1| - 0.27 10.4 0.0 3.3 6.8 0.0 2.0 1 1 1 2 2 2 0 N2227-like protein PKD PF00801.20 gi|386002274|ref|YP_005920573.1| - 0.00036 20.3 0.5 0.0031 17.3 0.1 2.2 1 1 1 2 2 2 1 PKD domain Big_7 PF17957.1 gi|386002274|ref|YP_005920573.1| - 0.00076 20.2 0.3 0.0048 17.6 0.3 2.2 1 1 0 1 1 1 1 Bacterial Ig domain BiPBP_C PF06832.12 gi|386002274|ref|YP_005920573.1| - 0.02 14.9 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family HYR PF02494.16 gi|386002274|ref|YP_005920573.1| - 0.055 13.8 0.0 0.081 13.3 0.0 1.3 1 0 0 1 1 1 0 HYR domain He_PIG PF05345.12 gi|386002274|ref|YP_005920573.1| - 0.077 13.2 3.4 0.16 12.2 1.4 2.5 2 1 0 2 2 2 0 Putative Ig domain DUF4625 PF15418.6 gi|386002274|ref|YP_005920573.1| - 0.14 12.4 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) Cadherin PF00028.17 gi|386002274|ref|YP_005920573.1| - 0.16 12.5 0.0 0.26 11.7 0.0 1.3 1 0 0 1 1 1 0 Cadherin domain SprB PF13573.6 gi|386002274|ref|YP_005920573.1| - 1.1 9.0 0.1 1.1 9.0 0.1 2.6 3 0 0 3 3 3 0 SprB repeat CbiA PF01656.23 gi|386002275|ref|YP_005920574.1| - 4.7e-14 52.6 0.0 6.9e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|386002275|ref|YP_005920574.1| - 1.3e-09 37.9 0.1 8e-06 25.5 0.0 2.3 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|386002275|ref|YP_005920574.1| - 2.7e-07 30.7 0.0 4.3e-07 30.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|386002275|ref|YP_005920574.1| - 1.8e-06 27.6 0.1 1.7e-05 24.4 0.1 2.0 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF87 PF01935.17 gi|386002275|ref|YP_005920574.1| - 8.3e-05 22.8 0.1 0.00049 20.3 0.1 2.0 1 1 1 2 2 2 1 Helicase HerA, central domain CBP_BcsQ PF06564.12 gi|386002275|ref|YP_005920574.1| - 8.5e-05 22.1 0.1 0.053 13.0 0.1 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_33 PF13671.6 gi|386002275|ref|YP_005920574.1| - 0.00014 22.1 0.0 0.00031 20.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|386002275|ref|YP_005920574.1| - 0.0012 19.2 0.0 0.002 18.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|386002275|ref|YP_005920574.1| - 0.0016 18.2 0.6 0.0087 15.8 0.6 2.0 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|386002275|ref|YP_005920574.1| - 0.0017 18.9 0.0 0.002 18.6 0.0 1.5 1 1 0 1 1 1 1 ABC transporter ArsA_ATPase PF02374.15 gi|386002275|ref|YP_005920574.1| - 0.0029 16.8 0.0 0.036 13.2 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|386002275|ref|YP_005920574.1| - 0.0044 16.8 0.0 0.069 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain CLP1_P PF16575.5 gi|386002275|ref|YP_005920574.1| - 0.008 16.0 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_22 PF13401.6 gi|386002275|ref|YP_005920574.1| - 0.014 15.7 0.0 0.15 12.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|386002275|ref|YP_005920574.1| - 0.033 13.4 0.2 0.068 12.3 0.2 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.29 gi|386002275|ref|YP_005920574.1| - 0.044 14.2 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 gi|386002275|ref|YP_005920574.1| - 0.061 13.2 0.2 0.15 12.0 0.1 1.8 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PEPCK_ATP PF01293.20 gi|386002275|ref|YP_005920574.1| - 0.066 11.9 0.4 0.098 11.3 0.4 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase MeaB PF03308.16 gi|386002275|ref|YP_005920574.1| - 0.069 12.1 0.1 0.11 11.5 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_26 PF13500.6 gi|386002275|ref|YP_005920574.1| - 0.11 12.3 0.3 0.4 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|386002275|ref|YP_005920574.1| - 0.16 11.6 1.0 4.9 6.7 0.3 2.7 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain Ribosomal_S3Ae PF01015.18 gi|386002276|ref|YP_005920575.1| - 3.2e-69 232.6 0.5 3.7e-69 232.4 0.5 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DoxA PF07680.11 gi|386002276|ref|YP_005920575.1| - 0.043 13.7 0.0 0.075 12.9 0.0 1.4 1 1 0 1 1 1 0 TQO small subunit DoxA RNaseH_like PF04308.12 gi|386002276|ref|YP_005920575.1| - 0.055 13.4 0.1 2.2 8.2 0.0 2.4 1 1 1 2 2 2 0 Ribonuclease H-like Lactamase_B PF00753.27 gi|386002278|ref|YP_005920577.1| - 1.1e-07 32.0 0.0 2.1e-07 31.2 0.0 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|386002278|ref|YP_005920577.1| - 0.0026 17.3 0.1 0.0074 15.8 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain ApbA_C PF08546.11 gi|386002279|ref|YP_005920578.1| - 9.1e-38 129.3 0.1 1.2e-37 128.9 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|386002279|ref|YP_005920578.1| - 8.7e-19 67.7 0.0 2.2e-17 63.1 0.0 2.6 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Methyltransf_31 PF13847.6 gi|386002280|ref|YP_005920579.1| - 3.7e-16 59.3 0.1 5.5e-16 58.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|386002280|ref|YP_005920579.1| - 1.4e-15 57.4 0.1 2.1e-15 56.9 0.1 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_25 PF13649.6 gi|386002280|ref|YP_005920579.1| - 2e-12 47.6 0.0 3.1e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002280|ref|YP_005920579.1| - 8.8e-12 45.6 0.0 1.5e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386002280|ref|YP_005920579.1| - 6e-11 42.8 0.0 8.7e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386002280|ref|YP_005920579.1| - 8.4e-10 38.7 0.0 1.1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|386002280|ref|YP_005920579.1| - 2.3e-08 33.8 0.0 3e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_33 PF10017.9 gi|386002280|ref|YP_005920579.1| - 0.00014 21.2 0.0 0.00019 20.7 0.0 1.2 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent PrmA PF06325.13 gi|386002280|ref|YP_005920579.1| - 0.00021 20.8 1.7 0.0005 19.5 1.7 1.6 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.11 gi|386002280|ref|YP_005920579.1| - 0.0004 20.1 0.0 0.0012 18.6 0.0 1.6 2 0 0 2 2 2 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_18 PF12847.7 gi|386002280|ref|YP_005920579.1| - 0.00063 19.7 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|386002280|ref|YP_005920579.1| - 0.0015 18.1 0.1 0.0038 16.7 0.1 1.7 2 0 0 2 2 2 1 Putative methyltransferase CMAS PF02353.20 gi|386002280|ref|YP_005920579.1| - 0.0025 17.1 0.0 0.0029 16.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 gi|386002280|ref|YP_005920579.1| - 0.0077 17.2 0.0 0.011 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|386002280|ref|YP_005920579.1| - 0.021 14.5 0.0 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Hyphal_reg_CWP PF11765.8 gi|386002280|ref|YP_005920579.1| - 0.033 13.2 0.9 0.044 12.7 0.9 1.1 1 0 0 1 1 1 0 Hyphally regulated cell wall protein N-terminal Methyltransf_2 PF00891.18 gi|386002280|ref|YP_005920579.1| - 0.036 13.3 0.0 0.049 12.9 0.0 1.3 1 1 0 1 1 1 0 O-methyltransferase domain PCMT PF01135.19 gi|386002280|ref|YP_005920579.1| - 0.08 12.7 0.0 0.2 11.4 0.0 1.7 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) POTRA_2 PF08479.11 gi|386002280|ref|YP_005920579.1| - 0.13 12.1 0.2 0.35 10.7 0.0 1.7 2 0 0 2 2 2 0 POTRA domain, ShlB-type Spermine_synth PF01564.17 gi|386002280|ref|YP_005920579.1| - 0.14 11.5 0.0 0.28 10.6 0.0 1.5 1 1 0 1 1 1 0 Spermine/spermidine synthase domain Pox_A_type_inc PF04508.12 gi|386002281|ref|YP_005920580.1| - 0.25 11.3 2.9 0.89 9.5 0.2 2.3 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat PKcGMP_CC PF16808.5 gi|386002281|ref|YP_005920580.1| - 0.29 11.0 2.9 12 5.9 0.1 3.0 3 0 0 3 3 3 0 Coiled-coil N-terminus of cGMP-dependent protein kinase TPR_12 PF13424.6 gi|386002282|ref|YP_005920581.1| - 2.3e-08 34.2 32.0 0.00078 19.7 1.5 7.2 5 1 2 7 7 7 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|386002282|ref|YP_005920581.1| - 0.00026 20.7 26.9 0.8 9.6 0.0 9.0 9 1 1 10 10 10 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386002282|ref|YP_005920581.1| - 0.00065 19.5 13.2 3.5 7.9 0.1 7.4 7 1 0 7 7 7 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386002282|ref|YP_005920581.1| - 0.00096 19.0 2.5 0.00096 19.0 2.5 6.7 8 1 0 8 8 8 2 Tetratricopeptide repeat SNAP PF14938.6 gi|386002282|ref|YP_005920581.1| - 0.001 18.5 21.4 0.79 9.1 7.9 4.6 3 1 2 5 5 5 3 Soluble NSF attachment protein, SNAP PI3K_P85_iSH2 PF16454.5 gi|386002282|ref|YP_005920581.1| - 0.72 9.4 3.8 6.4 6.4 0.9 3.2 2 2 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain TPR_8 PF13181.6 gi|386002282|ref|YP_005920581.1| - 3.1 8.2 33.2 3.7 8.0 0.2 9.1 9 1 0 9 9 9 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386002282|ref|YP_005920581.1| - 7.6 6.3 19.0 5.2 6.8 0.2 6.8 7 1 0 7 7 7 0 TPR repeat TauE PF01925.19 gi|386002283|ref|YP_005920582.1| - 4.4e-46 157.4 43.2 5.1e-46 157.2 43.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Peptidase_U32 PF01136.19 gi|386002284|ref|YP_005920583.1| - 2.7e-113 376.9 0.0 7.3e-83 277.3 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.8 gi|386002284|ref|YP_005920583.1| - 2.4e-18 66.7 0.0 5.8e-18 65.5 0.0 1.6 1 0 0 1 1 1 1 Collagenase OrfB_Zn_ribbon PF07282.11 gi|386002285|ref|YP_005920584.1| - 0.038 13.9 0.9 0.059 13.3 0.9 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_alkylation PF08713.11 gi|386002286|ref|YP_005920585.1| - 3.7e-61 206.6 3.1 4.2e-61 206.4 3.1 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme HEAT_2 PF13646.6 gi|386002286|ref|YP_005920585.1| - 0.014 15.8 0.1 14 6.1 0.0 3.1 3 1 1 4 4 4 0 HEAT repeats PMSR PF01625.21 gi|386002287|ref|YP_005920586.1| - 5.6e-68 227.9 0.2 6.5e-68 227.7 0.2 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase PEGA PF08308.11 gi|386002289|ref|YP_005920588.1| - 0.069 13.0 1.3 0.2 11.6 1.3 1.8 1 1 0 1 1 1 0 PEGA domain Rhodanese PF00581.20 gi|386002290|ref|YP_005920589.1| - 4.7e-20 72.1 0.0 5.2e-10 39.8 0.0 2.9 3 0 0 3 3 3 2 Rhodanese-like domain Lactamase_B PF00753.27 gi|386002290|ref|YP_005920589.1| - 9.1e-08 32.3 4.2 2.9e-07 30.7 1.6 2.7 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily ABC_tran PF00005.27 gi|386002292|ref|YP_005920591.1| - 2.9e-22 79.6 0.7 1.4e-11 45.1 0.0 2.3 1 1 1 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|386002292|ref|YP_005920591.1| - 1.8e-06 28.0 1.8 5.9e-05 23.0 0.3 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|386002292|ref|YP_005920591.1| - 4.4e-05 23.0 2.3 0.01 15.3 0.2 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|386002292|ref|YP_005920591.1| - 5.8e-05 23.0 0.1 0.00076 19.3 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|386002292|ref|YP_005920591.1| - 7.2e-05 23.4 0.1 9.2e-05 23.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|386002292|ref|YP_005920591.1| - 0.00028 20.6 0.1 0.00049 19.8 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|386002292|ref|YP_005920591.1| - 0.00039 20.8 0.0 0.0006 20.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|386002292|ref|YP_005920591.1| - 0.0024 17.9 0.1 1.8 8.5 0.1 2.3 1 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|386002292|ref|YP_005920591.1| - 0.0034 17.1 0.1 0.0045 16.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|386002292|ref|YP_005920591.1| - 0.0047 17.1 0.0 0.0099 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|386002292|ref|YP_005920591.1| - 0.0066 16.4 0.2 0.073 13.0 0.0 2.1 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.6 gi|386002292|ref|YP_005920591.1| - 0.0091 16.3 0.7 0.028 14.7 0.7 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|386002292|ref|YP_005920591.1| - 0.0093 16.4 0.0 0.019 15.4 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|386002292|ref|YP_005920591.1| - 0.011 15.2 0.3 0.93 8.9 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein NB-ARC PF00931.22 gi|386002292|ref|YP_005920591.1| - 0.012 14.8 0.5 0.024 13.8 0.5 1.6 1 1 0 1 1 1 0 NB-ARC domain ABC_ATPase PF09818.9 gi|386002292|ref|YP_005920591.1| - 0.021 13.6 0.1 2.9 6.6 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_14 PF13173.6 gi|386002292|ref|YP_005920591.1| - 0.022 14.8 0.1 0.054 13.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|386002292|ref|YP_005920591.1| - 0.023 14.6 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|386002292|ref|YP_005920591.1| - 0.046 13.6 0.1 0.067 13.1 0.1 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|386002292|ref|YP_005920591.1| - 0.059 13.3 0.3 0.16 11.9 0.1 1.7 2 0 0 2 2 2 0 NTPase MobB PF03205.14 gi|386002292|ref|YP_005920591.1| - 0.065 13.1 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_27 PF13514.6 gi|386002292|ref|YP_005920591.1| - 0.069 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|386002292|ref|YP_005920591.1| - 0.074 12.6 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|386002292|ref|YP_005920591.1| - 0.079 12.6 0.1 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|386002292|ref|YP_005920591.1| - 0.09 12.5 0.1 0.18 11.6 0.0 1.5 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|386002292|ref|YP_005920591.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 gi|386002292|ref|YP_005920591.1| - 0.11 11.4 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain AAA_19 PF13245.6 gi|386002292|ref|YP_005920591.1| - 0.14 12.5 0.4 0.26 11.6 0.4 1.7 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|386002292|ref|YP_005920591.1| - 0.15 11.5 0.0 0.3 10.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Methyltransf_29 PF03141.16 gi|386002292|ref|YP_005920591.1| - 0.16 10.5 0.1 0.25 9.9 0.0 1.3 2 0 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase TsaE PF02367.17 gi|386002292|ref|YP_005920591.1| - 0.17 11.9 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Methyltransf_11 PF08241.12 gi|386002293|ref|YP_005920592.1| - 8.6e-13 48.8 0.0 1.2e-12 48.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386002293|ref|YP_005920592.1| - 7.5e-11 42.6 0.0 1e-10 42.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002293|ref|YP_005920592.1| - 2.1e-07 31.6 0.0 3e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386002293|ref|YP_005920592.1| - 3.3e-07 30.3 0.0 4.5e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386002293|ref|YP_005920592.1| - 0.00064 19.5 0.0 0.00076 19.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386002293|ref|YP_005920592.1| - 0.00098 18.5 0.0 0.0012 18.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_28 PF02636.17 gi|386002293|ref|YP_005920592.1| - 0.036 13.7 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Peripla_BP_2 PF01497.18 gi|386002294|ref|YP_005920593.1| - 5.4e-20 72.0 0.0 8.7e-20 71.3 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein CobN-Mg_chel PF02514.16 gi|386002295|ref|YP_005920594.1| - 0 1093.7 0.0 0 1093.5 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF3479 PF11965.8 gi|386002295|ref|YP_005920594.1| - 5.5e-05 23.3 0.0 0.00012 22.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3479) Peripla_BP_2 PF01497.18 gi|386002296|ref|YP_005920595.1| - 8.6e-23 81.1 0.0 1.3e-22 80.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ABC_tran PF00005.27 gi|386002297|ref|YP_005920596.1| - 2.4e-31 109.0 0.0 6.1e-31 107.8 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|386002297|ref|YP_005920596.1| - 7.2e-10 39.2 1.0 2.6e-05 24.2 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|386002297|ref|YP_005920596.1| - 1.9e-05 25.0 0.3 9.2e-05 22.7 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|386002297|ref|YP_005920596.1| - 1.9e-05 25.1 0.0 3.6e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|386002297|ref|YP_005920596.1| - 4.3e-05 23.1 0.4 0.0019 17.7 0.4 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|386002297|ref|YP_005920596.1| - 8.6e-05 23.1 0.1 0.00012 22.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|386002297|ref|YP_005920596.1| - 0.00022 21.1 0.1 0.00046 20.0 0.1 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|386002297|ref|YP_005920596.1| - 0.0005 19.8 0.1 0.001 18.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|386002297|ref|YP_005920596.1| - 0.0047 17.4 0.1 0.051 14.0 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|386002297|ref|YP_005920596.1| - 0.0066 16.2 0.0 0.01 15.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|386002297|ref|YP_005920596.1| - 0.0086 14.9 0.6 2.2 7.0 0.1 3.0 2 2 0 2 2 2 1 Predicted ATPase of the ABC class Mg_chelatase PF01078.21 gi|386002297|ref|YP_005920596.1| - 0.013 14.9 0.0 0.028 13.8 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|386002297|ref|YP_005920596.1| - 0.018 14.3 0.3 0.037 13.2 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain TniB PF05621.11 gi|386002297|ref|YP_005920596.1| - 0.023 14.1 0.6 1.3 8.4 0.1 2.2 1 1 0 2 2 2 0 Bacterial TniB protein AAA_5 PF07728.14 gi|386002297|ref|YP_005920596.1| - 0.033 14.2 0.1 0.59 10.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|386002297|ref|YP_005920596.1| - 0.034 14.3 0.3 0.12 12.5 0.1 1.9 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|386002297|ref|YP_005920596.1| - 0.038 13.9 0.4 0.16 11.8 0.1 2.0 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.6 gi|386002297|ref|YP_005920596.1| - 0.045 14.0 0.1 0.75 10.1 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|386002297|ref|YP_005920596.1| - 0.054 13.4 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 RsgA GTPase MeaB PF03308.16 gi|386002297|ref|YP_005920596.1| - 0.061 12.3 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|386002297|ref|YP_005920596.1| - 0.064 12.9 0.1 0.14 11.8 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|386002297|ref|YP_005920596.1| - 0.081 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|386002297|ref|YP_005920596.1| - 0.091 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|386002297|ref|YP_005920596.1| - 0.1 12.9 0.3 0.21 11.9 0.3 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|386002297|ref|YP_005920596.1| - 0.11 12.4 0.5 0.28 11.1 0.5 1.9 1 1 0 1 1 1 0 NACHT domain MobB PF03205.14 gi|386002297|ref|YP_005920596.1| - 0.13 12.1 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 gi|386002297|ref|YP_005920596.1| - 0.13 11.8 0.1 0.27 10.8 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.20 gi|386002297|ref|YP_005920596.1| - 0.14 11.3 0.0 0.21 10.7 0.0 1.2 1 1 0 1 1 1 0 G-protein alpha subunit TsaE PF02367.17 gi|386002297|ref|YP_005920596.1| - 0.16 12.0 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_13 PF13166.6 gi|386002297|ref|YP_005920596.1| - 0.29 9.7 0.2 2.5 6.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain FecCD PF01032.18 gi|386002298|ref|YP_005920597.1| - 2.2e-95 319.3 39.7 2.8e-95 318.9 39.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|386002298|ref|YP_005920597.1| - 0.0011 18.6 23.0 0.0011 18.6 23.0 1.7 1 1 0 1 1 1 1 ABC 3 transport family AAA_lid_2 PF17863.1 gi|386002299|ref|YP_005920598.1| - 1.3e-20 73.0 0.3 3.9e-20 71.5 0.3 1.8 1 0 0 1 1 1 1 AAA lid domain VWA_2 PF13519.6 gi|386002299|ref|YP_005920598.1| - 2.2e-15 57.2 0.0 5.9e-15 55.8 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|386002299|ref|YP_005920598.1| - 1.7e-10 40.7 0.3 2.4e-07 30.3 0.0 2.7 2 1 1 3 3 3 2 Magnesium chelatase, subunit ChlI VWA PF00092.28 gi|386002299|ref|YP_005920598.1| - 1.7e-09 38.2 0.0 2.7e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|386002299|ref|YP_005920598.1| - 1.8e-09 37.7 0.0 1.3e-05 25.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|386002299|ref|YP_005920598.1| - 7.8e-06 25.1 0.4 0.0012 18.0 0.0 3.3 3 0 0 3 3 3 1 MCM P-loop domain AAA_16 PF13191.6 gi|386002299|ref|YP_005920598.1| - 0.0039 17.6 0.0 0.014 15.8 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|386002299|ref|YP_005920598.1| - 0.0054 16.5 0.0 0.4 10.4 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain CobT_C PF11775.8 gi|386002299|ref|YP_005920598.1| - 0.036 13.7 0.7 0.48 10.0 0.1 2.3 2 0 0 2 2 2 0 Cobalamin biosynthesis protein CobT VWA domain AAA_22 PF13401.6 gi|386002299|ref|YP_005920598.1| - 0.04 14.2 0.0 0.13 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|386002299|ref|YP_005920598.1| - 0.045 14.2 0.0 0.35 11.3 0.0 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|386002299|ref|YP_005920598.1| - 0.099 12.5 0.0 6.2 6.7 0.0 2.8 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase_C PF13335.6 gi|386002299|ref|YP_005920598.1| - 1 10.0 4.9 0.15 12.7 0.5 2.0 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI C-terminal ABC_tran PF00005.27 gi|386002300|ref|YP_005920599.1| - 1.5e-32 112.9 0.0 2.5e-32 112.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386002300|ref|YP_005920599.1| - 5.3e-14 52.7 2.0 2.1e-10 40.9 0.6 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|386002300|ref|YP_005920599.1| - 0.00028 20.7 0.0 0.49 10.0 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|386002300|ref|YP_005920599.1| - 0.0019 18.7 2.1 0.0053 17.3 2.1 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|386002300|ref|YP_005920599.1| - 0.0021 17.5 0.1 0.0087 15.5 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|386002300|ref|YP_005920599.1| - 0.01 16.2 0.3 0.052 14.0 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|386002300|ref|YP_005920599.1| - 0.013 15.2 0.5 0.028 14.1 0.5 1.7 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|386002300|ref|YP_005920599.1| - 0.019 15.2 0.0 0.048 13.9 0.0 1.7 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|386002300|ref|YP_005920599.1| - 0.025 14.9 0.1 0.049 14.0 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|386002300|ref|YP_005920599.1| - 0.045 13.4 0.2 0.081 12.6 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain G-alpha PF00503.20 gi|386002300|ref|YP_005920599.1| - 0.067 12.3 0.0 0.081 12.1 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_27 PF13514.6 gi|386002300|ref|YP_005920599.1| - 0.072 12.7 0.4 0.29 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|386002300|ref|YP_005920599.1| - 0.087 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain cobW PF02492.19 gi|386002300|ref|YP_005920599.1| - 0.13 11.8 0.2 0.46 10.0 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain TehB PF03848.14 gi|386002300|ref|YP_005920599.1| - 0.17 11.3 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB AAA_33 PF13671.6 gi|386002300|ref|YP_005920599.1| - 0.17 12.0 0.7 0.48 10.6 0.7 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|386002300|ref|YP_005920599.1| - 0.18 12.0 1.1 0.66 10.3 1.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|386002300|ref|YP_005920599.1| - 0.2 10.3 0.6 0.76 8.4 0.2 2.0 1 1 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|386002301|ref|YP_005920600.1| - 3.7e-22 78.8 21.2 3.7e-22 78.8 21.2 1.9 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|386002301|ref|YP_005920600.1| - 3.2e-08 33.1 30.6 3.2e-08 33.1 30.6 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein Peripla_BP_2 PF01497.18 gi|386002302|ref|YP_005920601.1| - 7.4e-18 65.0 0.8 3e-15 56.5 0.1 2.1 2 0 0 2 2 2 2 Periplasmic binding protein CheY-binding PF09078.11 gi|386002302|ref|YP_005920601.1| - 0.00031 20.8 0.4 0.00068 19.7 0.4 1.6 1 0 0 1 1 1 1 CheY binding PQ-loop PF04193.14 gi|386002303|ref|YP_005920602.1| - 7.3e-11 41.7 0.0 7.3e-11 41.7 0.0 1.6 2 0 0 2 2 2 1 PQ loop repeat MtN3_slv PF03083.16 gi|386002303|ref|YP_005920602.1| - 2.5e-10 40.2 1.1 2.9e-10 40.1 1.1 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange DUF5353 PF17304.2 gi|386002303|ref|YP_005920602.1| - 0.01 15.6 2.6 1.3 8.8 0.1 2.5 2 1 0 2 2 2 0 Family of unknown function (DUF5353) PsiE PF06146.12 gi|386002304|ref|YP_005920603.1| - 1.1e-18 67.4 10.2 2.5e-18 66.2 10.2 1.6 1 0 0 1 1 1 1 Phosphate-starvation-inducible E DUF412 PF04217.13 gi|386002304|ref|YP_005920603.1| - 0.12 12.3 3.6 0.5 10.3 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF412 PDH PF02153.17 gi|386002307|ref|YP_005920606.1| - 4.3e-48 163.6 0.0 4.9e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Prephenate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|386002307|ref|YP_005920606.1| - 1.9e-06 27.4 0.0 3.3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|386002307|ref|YP_005920606.1| - 1.1e-05 25.7 0.0 1.8e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|386002307|ref|YP_005920606.1| - 2.9e-05 24.6 0.0 6.5e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Phage_Gp19 PF09355.10 gi|386002307|ref|YP_005920606.1| - 0.01 16.3 0.0 0.018 15.4 0.0 1.3 1 0 0 1 1 1 0 Phage protein Gp19/Gp15/Gp42 IlvN PF07991.12 gi|386002307|ref|YP_005920606.1| - 0.018 14.6 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 gi|386002307|ref|YP_005920606.1| - 0.12 12.4 1.1 0.29 11.1 0.1 1.9 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|386002307|ref|YP_005920606.1| - 0.2 11.3 0.1 0.44 10.2 0.1 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_dh_N PF08501.11 gi|386002308|ref|YP_005920607.1| - 2.7e-25 88.4 0.0 5.1e-25 87.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|386002308|ref|YP_005920607.1| - 1.1e-14 53.9 0.1 2.4e-14 52.8 0.1 1.7 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|386002308|ref|YP_005920607.1| - 6.9e-12 45.6 0.0 1e-11 45.0 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|386002308|ref|YP_005920607.1| - 4.5e-05 23.9 0.2 0.00013 22.5 0.2 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|386002308|ref|YP_005920607.1| - 0.00046 19.6 0.1 0.00075 18.9 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|386002308|ref|YP_005920607.1| - 0.0016 18.7 0.0 0.0035 17.6 0.0 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain IlvN PF07991.12 gi|386002308|ref|YP_005920607.1| - 0.0023 17.5 0.1 0.0046 16.5 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|386002308|ref|YP_005920607.1| - 0.0034 17.5 0.1 0.006 16.7 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiF PF00899.21 gi|386002308|ref|YP_005920607.1| - 0.012 14.9 1.2 0.17 11.2 0.9 2.1 2 0 0 2 2 2 0 ThiF family NAD_binding_7 PF13241.6 gi|386002308|ref|YP_005920607.1| - 0.02 15.3 0.1 0.034 14.6 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding THF_DHG_CYH_C PF02882.19 gi|386002308|ref|YP_005920607.1| - 0.033 13.5 0.1 0.46 9.8 0.1 2.1 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GARS_N PF02844.15 gi|386002308|ref|YP_005920607.1| - 0.052 14.3 0.3 0.54 11.1 0.1 2.2 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain Glycos_transf_3 PF00591.21 gi|386002309|ref|YP_005920608.1| - 2e-14 53.8 0.1 5.9e-14 52.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.13 gi|386002309|ref|YP_005920608.1| - 1.2e-09 37.7 0.0 3e-09 36.4 0.0 1.6 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.17 gi|386002309|ref|YP_005920608.1| - 2.2e-07 30.6 0.1 5.3e-07 29.4 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF2254 PF10011.9 gi|386002309|ref|YP_005920608.1| - 0.0027 16.6 0.0 0.0041 16.0 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Fer4_7 PF12838.7 gi|386002310|ref|YP_005920609.1| - 2.7e-05 24.7 2.1 0.43 11.2 0.1 3.1 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386002310|ref|YP_005920609.1| - 3.4e-05 23.5 16.3 0.0022 17.7 1.1 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|386002310|ref|YP_005920609.1| - 0.0001 22.8 1.9 0.0001 22.8 1.9 2.4 2 1 0 2 2 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|386002310|ref|YP_005920609.1| - 0.00017 22.2 2.2 0.00017 22.2 2.2 2.8 3 1 0 3 3 2 1 4Fe-4S single cluster domain FYVE PF01363.21 gi|386002310|ref|YP_005920609.1| - 0.0083 16.2 0.1 0.076 13.2 0.0 2.2 2 0 0 2 2 2 1 FYVE zinc finger Fer4_21 PF14697.6 gi|386002310|ref|YP_005920609.1| - 0.0087 16.2 5.1 0.015 15.4 0.1 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386002310|ref|YP_005920609.1| - 0.013 15.6 0.8 0.013 15.6 0.8 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain zf-C2HC_2 PF13913.6 gi|386002310|ref|YP_005920609.1| - 0.016 15.1 0.4 0.037 13.9 0.4 1.7 1 0 0 1 1 1 0 zinc-finger of a C2HC-type Fer4_6 PF12837.7 gi|386002310|ref|YP_005920609.1| - 0.12 12.5 1.4 0.12 12.5 1.4 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain zf-FCS PF06467.14 gi|386002310|ref|YP_005920609.1| - 0.15 12.1 2.3 5.7 7.0 0.0 2.6 3 0 0 3 3 3 0 MYM-type Zinc finger with FCS sequence motif zf-C2H2_4 PF13894.6 gi|386002310|ref|YP_005920609.1| - 0.22 12.5 0.0 0.22 12.5 0.0 2.3 3 0 0 3 3 2 0 C2H2-type zinc finger HNH_5 PF14279.6 gi|386002310|ref|YP_005920609.1| - 0.35 10.7 0.0 0.35 10.7 0.0 2.1 2 1 0 2 2 1 0 HNH endonuclease Fer4_9 PF13187.6 gi|386002310|ref|YP_005920609.1| - 0.37 11.0 7.0 2.6 8.3 0.1 3.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain zf-C2H2 PF00096.26 gi|386002310|ref|YP_005920609.1| - 0.38 11.3 0.1 0.38 11.3 0.1 1.9 2 0 0 2 2 1 0 Zinc finger, C2H2 type Fer4_10 PF13237.6 gi|386002310|ref|YP_005920609.1| - 0.76 9.9 8.0 1.8 8.7 4.1 3.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386002310|ref|YP_005920609.1| - 2.3 9.2 6.5 29 5.7 1.7 3.2 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|386002310|ref|YP_005920609.1| - 3.3 8.8 11.6 20 6.4 0.2 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_11 PF13247.6 gi|386002311|ref|YP_005920610.1| - 3.1e-13 49.7 10.6 3.1e-13 49.7 10.6 1.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002311|ref|YP_005920610.1| - 1.7e-11 43.7 32.9 1.6e-05 24.8 1.8 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.27 gi|386002311|ref|YP_005920610.1| - 6.3e-11 41.6 37.9 6.9e-07 28.8 3.7 5.3 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386002311|ref|YP_005920610.1| - 3.1e-10 40.5 29.4 0.0008 19.9 14.2 3.6 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386002311|ref|YP_005920610.1| - 6.8e-09 35.8 26.7 0.00051 20.2 8.6 3.1 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386002311|ref|YP_005920610.1| - 4.8e-07 30.6 23.2 0.015 16.2 3.9 4.3 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|386002311|ref|YP_005920610.1| - 6.4e-07 29.4 29.6 0.00027 21.0 12.4 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386002311|ref|YP_005920610.1| - 6.9e-07 29.0 33.6 0.00012 21.9 2.2 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|386002311|ref|YP_005920610.1| - 4.2e-06 27.3 45.2 0.0044 17.8 5.9 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|386002311|ref|YP_005920610.1| - 4.4e-06 26.8 29.2 0.0047 17.3 3.3 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386002311|ref|YP_005920610.1| - 0.00062 19.8 29.1 0.008 16.3 10.5 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386002311|ref|YP_005920610.1| - 0.0011 19.5 24.3 0.0049 17.4 0.7 4.1 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386002311|ref|YP_005920610.1| - 0.011 16.1 30.9 0.96 9.9 12.0 3.7 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fe_dep_repr_C PF02742.15 gi|386002311|ref|YP_005920610.1| - 0.21 11.7 0.6 0.57 10.3 0.6 1.7 1 0 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain Molybdopterin PF00384.22 gi|386002312|ref|YP_005920611.1| - 2.7e-82 277.1 0.0 3.3e-82 276.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|386002312|ref|YP_005920611.1| - 2.7e-29 101.4 0.0 4.5e-29 100.7 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|386002312|ref|YP_005920611.1| - 7e-10 38.8 0.1 1.4e-09 37.7 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_7 PF12838.7 gi|386002313|ref|YP_005920612.1| - 3.1e-16 59.7 70.8 1.2e-06 29.0 12.2 3.4 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|386002313|ref|YP_005920612.1| - 6.5e-16 58.3 11.1 6.5e-16 58.3 11.1 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386002313|ref|YP_005920612.1| - 5.4e-12 45.7 45.1 1.9e-05 24.7 10.9 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002313|ref|YP_005920612.1| - 1.6e-10 40.6 34.9 0.002 18.1 1.3 4.7 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.27 gi|386002313|ref|YP_005920612.1| - 1.7e-10 40.3 39.1 0.00016 21.3 2.3 5.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386002313|ref|YP_005920612.1| - 1.2e-09 39.0 21.9 0.017 16.1 2.0 4.3 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|386002313|ref|YP_005920612.1| - 1.7e-09 37.6 28.5 0.00058 19.9 12.4 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386002313|ref|YP_005920612.1| - 3.3e-09 36.3 33.2 0.0088 16.1 2.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|386002313|ref|YP_005920612.1| - 6.1e-07 29.5 36.8 0.0075 16.7 4.0 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386002313|ref|YP_005920612.1| - 0.00022 21.6 23.3 0.0026 18.2 6.5 3.3 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386002313|ref|YP_005920612.1| - 0.0029 18.4 42.6 0.036 15.0 6.0 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386002313|ref|YP_005920612.1| - 0.0044 17.1 32.0 0.11 12.6 11.6 3.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386002313|ref|YP_005920612.1| - 0.0053 17.3 26.0 0.62 10.6 2.4 4.3 2 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|386002313|ref|YP_005920612.1| - 0.17 11.7 23.9 0.27 11.0 0.6 3.5 1 1 2 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF4033 PF13225.6 gi|386002313|ref|YP_005920612.1| - 0.19 11.7 5.8 5.5 7.1 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4033) Prismane PF03063.20 gi|386002314|ref|YP_005920613.1| - 4e-173 576.8 0.1 4.6e-173 576.6 0.1 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family MFS_1 PF07690.16 gi|386002316|ref|YP_005920615.1| - 7.3e-18 64.6 14.4 8.5e-18 64.4 14.4 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|386002316|ref|YP_005920615.1| - 2 7.2 10.1 2.3 7.0 10.1 1.2 1 0 0 1 1 1 0 MFS_1 like family RTX PF02382.15 gi|386002316|ref|YP_005920615.1| - 8.8 5.9 6.7 18 4.9 6.7 1.6 1 1 0 1 1 1 0 N-terminal domain in RTX protein ADP_ribosyl_GH PF03747.14 gi|386002317|ref|YP_005920616.1| - 3.3e-63 214.2 6.1 3.7e-63 214.0 6.1 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase DUF531 PF04407.12 gi|386002317|ref|YP_005920616.1| - 0.022 14.9 0.0 0.039 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF531) Semialdhyde_dh PF01118.24 gi|386002318|ref|YP_005920617.1| - 3.4e-32 111.4 0.0 5.8e-32 110.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|386002318|ref|YP_005920617.1| - 6.7e-24 85.0 0.0 8.7e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.17 gi|386002318|ref|YP_005920617.1| - 0.0009 19.8 0.0 0.0022 18.5 0.0 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|386002318|ref|YP_005920617.1| - 0.031 15.1 0.0 0.066 14.0 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold PGM_PMM_II PF02879.16 gi|386002318|ref|YP_005920617.1| - 0.16 12.6 0.1 7 7.3 0.1 2.5 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CBS PF00571.28 gi|386002319|ref|YP_005920618.1| - 8.3e-31 106.2 5.5 1.4e-17 63.9 0.4 2.3 3 0 0 3 3 3 2 CBS domain Aromatic_hydrox PF11723.8 gi|386002319|ref|YP_005920618.1| - 0.075 12.5 0.0 0.081 12.4 0.0 1.1 1 0 0 1 1 1 0 Homotrimeric ring hydroxylase ArgJ PF01960.18 gi|386002320|ref|YP_005920619.1| - 4.6e-132 440.3 1.8 5.4e-132 440.0 1.8 1.0 1 0 0 1 1 1 1 ArgJ family TraD PF06412.11 gi|386002320|ref|YP_005920619.1| - 0.0087 15.8 0.2 0.046 13.5 0.0 2.4 3 0 0 3 3 3 1 Conjugal transfer protein TraD BID PF06393.11 gi|386002320|ref|YP_005920619.1| - 0.078 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 BH3 interacting domain (BID) Lyase_1 PF00206.20 gi|386002321|ref|YP_005920620.1| - 9.6e-62 209.1 0.0 1.7e-61 208.3 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|386002321|ref|YP_005920620.1| - 2.6e-15 56.9 0.1 2.6e-15 56.9 0.1 3.0 3 1 0 3 3 3 1 Argininosuccinate lyase C-terminal Cas_csx3 PF09620.10 gi|386002322|ref|YP_005920621.1| - 0.033 14.1 0.0 0.049 13.5 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_csx3) ATPase_2 PF01637.18 gi|386002323|ref|YP_005920622.1| - 0.0046 16.9 0.0 0.15 11.9 0.0 2.3 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea SMC_N PF02463.19 gi|386002323|ref|YP_005920622.1| - 0.0068 15.9 0.0 0.027 13.9 0.0 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|386002323|ref|YP_005920622.1| - 0.0092 16.4 0.0 0.032 14.6 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|386002323|ref|YP_005920622.1| - 0.022 14.5 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|386002323|ref|YP_005920622.1| - 0.051 13.5 0.0 0.95 9.4 0.0 2.6 2 1 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|386002323|ref|YP_005920622.1| - 0.11 12.8 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|386002323|ref|YP_005920622.1| - 0.12 11.2 0.0 0.22 10.3 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein ParA PF10609.9 gi|386002324|ref|YP_005920623.1| - 2.3e-06 27.3 0.0 3.7e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|386002324|ref|YP_005920623.1| - 1.4e-05 25.1 0.0 2.9e-05 24.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|386002324|ref|YP_005920623.1| - 5.2e-05 23.3 0.0 7.6e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|386002324|ref|YP_005920623.1| - 0.0025 17.0 0.0 0.0045 16.2 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|386002324|ref|YP_005920623.1| - 0.019 14.3 0.0 0.029 13.6 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ CBP_BcsQ PF06564.12 gi|386002324|ref|YP_005920623.1| - 0.067 12.7 0.0 0.23 10.9 0.0 1.7 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|386002324|ref|YP_005920623.1| - 0.17 11.1 0.0 0.33 10.2 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein MeaB PF03308.16 gi|386002324|ref|YP_005920623.1| - 0.18 10.7 0.1 0.29 10.1 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|386002324|ref|YP_005920623.1| - 0.2 11.1 0.0 0.32 10.4 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Glyco_hydro_45 PF02015.16 gi|386002324|ref|YP_005920623.1| - 0.21 11.5 0.0 0.37 10.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 45 DUF4462 PF14692.6 gi|386002325|ref|YP_005920624.1| - 0.82 9.2 2.7 0.39 10.2 0.5 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4462) Peptidase_C25 PF01364.18 gi|386002326|ref|YP_005920625.1| - 8.3e-12 45.0 0.0 2.7e-08 33.4 0.0 2.1 2 0 0 2 2 2 2 Peptidase family C25 CarboxypepD_reg PF13620.6 gi|386002326|ref|YP_005920625.1| - 2.7e-10 40.4 0.5 2.7e-10 40.4 0.5 1.9 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|386002326|ref|YP_005920625.1| - 0.00017 21.5 0.0 0.00035 20.5 0.0 1.5 1 0 0 1 1 1 1 CarboxypepD_reg-like domain bMG3 PF11974.8 gi|386002326|ref|YP_005920625.1| - 0.048 13.7 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain PolC_DP2 PF03833.13 gi|386002327|ref|YP_005920626.1| - 0 1249.6 0.0 0 1248.4 0.0 1.5 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 DZR PF12773.7 gi|386002327|ref|YP_005920626.1| - 0.027 14.5 18.6 0.19 11.8 0.2 2.8 2 1 0 2 2 2 0 Double zinc ribbon DUF2072 PF09845.9 gi|386002327|ref|YP_005920626.1| - 0.15 12.3 5.8 0.58 10.4 0.1 2.6 2 0 0 2 2 2 0 Zn-ribbon containing protein TerY_C PF15616.6 gi|386002327|ref|YP_005920626.1| - 0.69 10.0 11.8 0.14 12.3 7.1 2.1 2 0 0 2 2 2 0 TerY-C metal binding domain HypA PF01155.19 gi|386002327|ref|YP_005920626.1| - 1.9 8.5 14.0 0.41 10.7 0.3 3.2 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nop10p PF04135.12 gi|386002327|ref|YP_005920626.1| - 6.5 6.9 13.0 12 6.0 1.0 4.5 4 1 1 5 5 5 0 Nucleolar RNA-binding protein, Nop10p family DUF296 PF03479.15 gi|386002328|ref|YP_005920627.1| - 1.1e-19 70.8 0.1 1.4e-19 70.5 0.1 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Asn_synthase PF00733.21 gi|386002329|ref|YP_005920628.1| - 1.5e-35 123.5 3.5 1.5e-19 70.9 0.1 2.0 1 1 1 2 2 2 2 Asparagine synthase NAD_synthase PF02540.17 gi|386002329|ref|YP_005920628.1| - 0.0029 16.8 0.1 0.0042 16.2 0.1 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|386002329|ref|YP_005920628.1| - 0.071 11.9 0.2 0.1 11.4 0.2 1.2 1 0 0 1 1 1 0 tRNA methyl transferase QueC PF06508.13 gi|386002329|ref|YP_005920628.1| - 0.28 10.6 0.1 0.46 10.0 0.1 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Peripla_BP_2 PF01497.18 gi|386002330|ref|YP_005920629.1| - 8.7e-27 94.2 0.0 1.1e-26 93.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein UPF0047 PF01894.17 gi|386002332|ref|YP_005920631.1| - 2e-32 111.7 0.0 2.5e-32 111.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Gate PF07670.14 gi|386002333|ref|YP_005920632.1| - 3e-05 24.3 22.5 0.0043 17.3 5.6 3.3 2 2 1 3 3 3 2 Nucleoside recognition RhodobacterPufX PF11511.8 gi|386002333|ref|YP_005920632.1| - 0.076 12.6 0.1 0.23 11.1 0.1 1.8 1 0 0 1 1 1 0 Intrinsic membrane protein PufX Alpha-amylase PF00128.24 gi|386002334|ref|YP_005920633.1| - 8.6e-24 84.7 0.1 3.2e-17 63.1 0.0 3.9 2 2 1 3 3 3 3 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.18 gi|386002334|ref|YP_005920633.1| - 0.001 19.5 0.0 0.0043 17.5 0.0 2.0 2 0 0 2 2 2 1 Alpha amylase, C-terminal all-beta domain Malt_amylase_C PF16657.5 gi|386002334|ref|YP_005920633.1| - 0.035 14.2 0.0 0.067 13.3 0.0 1.5 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain SdrD_B PF17210.3 gi|386002338|ref|YP_005920637.1| - 2.2e-21 76.2 0.0 4.1e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 SdrD B-like domain CarboxypepD_reg PF13620.6 gi|386002338|ref|YP_005920637.1| - 0.0001 22.5 0.0 0.00028 21.1 0.0 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain VWA_2 PF13519.6 gi|386002339|ref|YP_005920638.1| - 1.4e-10 41.7 0.0 1.9e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|386002339|ref|YP_005920638.1| - 9.2e-10 39.0 0.0 1.1e-09 38.8 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain Ku_N PF03731.15 gi|386002339|ref|YP_005920638.1| - 0.024 14.4 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 Ku70/Ku80 N-terminal alpha/beta domain VWA_3 PF13768.6 gi|386002339|ref|YP_005920638.1| - 0.098 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|386002339|ref|YP_005920638.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.4 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein DUF772 PF05598.11 gi|386002340|ref|YP_005920639.1| - 6.2e-22 77.4 0.1 1.5e-21 76.2 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|386002340|ref|YP_005920639.1| - 2.1e-14 53.7 0.4 5.3e-14 52.4 0.4 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|386002340|ref|YP_005920639.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease VWA PF00092.28 gi|386002341|ref|YP_005920640.1| - 0.01 16.1 0.0 0.21 11.8 0.0 2.7 3 0 0 3 3 3 0 von Willebrand factor type A domain VWA_2 PF13519.6 gi|386002341|ref|YP_005920640.1| - 0.1 13.3 0.0 0.28 11.9 0.0 1.8 2 0 0 2 2 2 0 von Willebrand factor type A domain Thioredoxin_4 PF13462.6 gi|386002341|ref|YP_005920640.1| - 0.23 11.6 0.0 0.46 10.6 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin VWA PF00092.28 gi|386002342|ref|YP_005920641.1| - 1.8e-16 60.9 0.0 8.9e-08 32.6 0.0 2.5 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_2 PF13519.6 gi|386002342|ref|YP_005920641.1| - 8e-15 55.4 0.0 5.8e-09 36.6 0.0 2.6 2 1 0 2 2 2 2 von Willebrand factor type A domain vWA-TerF-like PF10138.9 gi|386002342|ref|YP_005920641.1| - 4.9e-07 30.0 0.0 0.0001 22.5 0.0 2.3 2 0 0 2 2 2 1 vWA found in TerF C terminus VWA_3 PF13768.6 gi|386002342|ref|YP_005920641.1| - 5.2e-05 23.2 0.0 0.093 12.7 0.0 2.5 2 0 0 2 2 2 2 von Willebrand factor type A domain NMT_C PF02799.15 gi|386002342|ref|YP_005920641.1| - 0.0001 21.9 4.1 6.9 6.1 0.0 4.3 4 0 0 4 4 4 3 Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain DUF11 PF01345.18 gi|386002342|ref|YP_005920641.1| - 0.0016 18.7 34.6 0.48 10.8 1.1 5.2 4 2 0 4 4 4 4 Domain of unknown function DUF11 GM_CSF PF01109.17 gi|386002342|ref|YP_005920641.1| - 0.022 14.9 0.0 0.067 13.4 0.0 1.7 2 0 0 2 2 2 0 Granulocyte-macrophage colony-stimulating factor Branch_AA_trans PF05525.13 gi|386002342|ref|YP_005920641.1| - 0.032 13.1 2.5 15 4.3 0.0 3.2 3 0 0 3 3 3 0 Branched-chain amino acid transport protein PixA PF12306.8 gi|386002342|ref|YP_005920641.1| - 0.047 13.9 0.8 1.2e+02 2.8 0.0 4.0 4 0 0 4 4 4 0 Inclusion body protein Glt_symporter PF03616.14 gi|386002342|ref|YP_005920641.1| - 1.2 7.7 9.9 18 3.8 0.1 3.9 4 0 0 4 4 4 0 Sodium/glutamate symporter RNase_HII PF01351.18 gi|386002343|ref|YP_005920642.1| - 5.2e-44 150.5 0.2 5.9e-44 150.3 0.2 1.0 1 0 0 1 1 1 1 Ribonuclease HII DUF4460 PF14687.6 gi|386002343|ref|YP_005920642.1| - 0.18 11.9 0.0 0.26 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4460) Aminotran_5 PF00266.19 gi|386002344|ref|YP_005920643.1| - 2.1e-40 138.9 0.0 2.5e-40 138.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|386002344|ref|YP_005920643.1| - 0.0038 16.6 0.0 0.0088 15.4 0.0 1.7 2 1 0 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|386002344|ref|YP_005920643.1| - 0.041 13.2 0.2 0.11 11.7 0.2 1.7 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family FixG_C PF11614.8 gi|386002345|ref|YP_005920644.1| - 0.096 12.9 0.2 0.67 10.2 0.0 2.1 2 0 0 2 2 2 0 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF5367 PF17329.2 gi|386002347|ref|YP_005920646.1| - 0.14 12.3 3.3 0.11 12.7 0.5 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5367) DUF2207 PF09972.9 gi|386002347|ref|YP_005920646.1| - 0.54 9.0 2.8 0.33 9.7 0.9 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4131 PF13567.6 gi|386002347|ref|YP_005920646.1| - 1 9.0 9.7 5.6 6.6 0.6 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Tubulin PF00091.25 gi|386002348|ref|YP_005920647.1| - 1.9e-08 34.7 0.2 4.5e-05 23.7 0.0 2.6 2 1 0 2 2 2 2 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|386002348|ref|YP_005920647.1| - 0.0053 16.0 0.1 0.025 13.8 0.0 1.9 2 0 0 2 2 2 1 Tubulin like DUF1722 PF08349.11 gi|386002350|ref|YP_005920649.1| - 7.6e-36 122.9 0.0 1.2e-35 122.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) DUF523 PF04463.12 gi|386002350|ref|YP_005920649.1| - 3.7e-32 111.2 0.0 6.5e-32 110.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF523) LpxK PF02606.14 gi|386002351|ref|YP_005920650.1| - 0.0038 16.4 0.0 0.049 12.7 0.0 2.0 2 0 0 2 2 2 1 Tetraacyldisaccharide-1-P 4'-kinase cobW PF02492.19 gi|386002351|ref|YP_005920650.1| - 0.039 13.5 0.0 0.073 12.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AA_kinase PF00696.28 gi|386002352|ref|YP_005920651.1| - 1.9e-21 76.8 0.0 2.4e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family SNF PF00209.18 gi|386002353|ref|YP_005920652.1| - 1.4e-60 205.5 25.9 5.2e-32 111.2 6.4 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family BiPBP_C PF06832.12 gi|386002353|ref|YP_005920652.1| - 0.13 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family EndIII_4Fe-2S PF10576.9 gi|386002355|ref|YP_005920654.1| - 2.5e-05 24.5 3.4 4.2e-05 23.7 3.4 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|386002355|ref|YP_005920654.1| - 4e-05 23.3 0.0 9.8e-05 22.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HhH-GPD PF00730.25 gi|386002355|ref|YP_005920654.1| - 0.0082 16.6 0.0 0.01 16.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.6 gi|386002355|ref|YP_005920654.1| - 0.0097 16.5 0.1 0.059 14.0 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF2400 PF09674.10 gi|386002355|ref|YP_005920654.1| - 0.22 11.5 0.0 0.29 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) HhH-GPD PF00730.25 gi|386002356|ref|YP_005920655.1| - 4.1e-09 36.8 0.1 5.6e-09 36.4 0.1 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Dimer_Tnp_hAT PF05699.14 gi|386002356|ref|YP_005920655.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 hAT family C-terminal dimerisation region DUF4010 PF13194.6 gi|386002357|ref|YP_005920656.1| - 2.1e-63 213.8 22.5 2.1e-63 213.8 22.5 2.8 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|386002357|ref|YP_005920656.1| - 1.2e-14 54.7 11.8 1.2e-14 54.7 11.8 3.3 3 0 0 3 3 3 1 MgtC family CxxCxxCC PF03692.15 gi|386002359|ref|YP_005920658.1| - 0.00044 20.9 1.3 0.00054 20.6 1.3 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain NAD_kinase PF01513.21 gi|386002360|ref|YP_005920659.1| - 7.8e-54 182.8 0.0 9.9e-54 182.5 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|386002360|ref|YP_005920659.1| - 0.0028 17.3 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Inositol_P PF00459.25 gi|386002361|ref|YP_005920660.1| - 1.4e-29 103.5 0.0 1.7e-29 103.2 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|386002361|ref|YP_005920660.1| - 0.0079 15.7 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain SSF PF00474.17 gi|386002362|ref|YP_005920661.1| - 4e-59 200.5 30.1 5.3e-59 200.1 30.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family TaqI_C PF12950.7 gi|386002364|ref|YP_005920663.1| - 9e-20 70.9 0.0 1.6e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Eco57I PF07669.11 gi|386002364|ref|YP_005920663.1| - 3.2e-13 50.1 0.0 8.6e-13 48.7 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.16 gi|386002364|ref|YP_005920663.1| - 1.5e-07 31.0 0.0 2.6e-06 27.0 0.0 2.3 2 0 0 2 2 2 1 N-6 DNA Methylase Acetyltransf_10 PF13673.7 gi|386002365|ref|YP_005920664.1| - 2.2e-13 50.2 0.0 2.5e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|386002365|ref|YP_005920664.1| - 3.4e-09 37.0 0.0 5.8e-09 36.2 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|386002365|ref|YP_005920664.1| - 3.9e-08 33.6 0.0 6.6e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|386002365|ref|YP_005920664.1| - 9.6e-05 22.3 0.0 0.00018 21.4 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|386002365|ref|YP_005920664.1| - 0.00029 20.9 0.0 0.017 15.2 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|386002365|ref|YP_005920664.1| - 0.0043 17.0 0.0 0.0076 16.2 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Beta-lactamase PF00144.24 gi|386002366|ref|YP_005920665.1| - 1.1e-44 153.0 0.0 1.7e-44 152.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.6 gi|386002366|ref|YP_005920665.1| - 0.0012 18.5 0.0 0.21 11.1 0.0 2.4 2 0 0 2 2 2 2 Beta-lactamase enzyme family Polbeta PF18765.1 gi|386002368|ref|YP_005920667.1| - 1.6e-10 40.9 0.0 2e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|386002368|ref|YP_005920667.1| - 6.2e-09 36.0 0.0 1e-08 35.3 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF104 PF01954.16 gi|386002369|ref|YP_005920668.1| - 1.9e-13 50.6 1.0 2.2e-13 50.4 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 gi|386002370|ref|YP_005920669.1| - 2.4e-14 53.9 0.4 6.9e-14 52.4 0.4 1.7 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|386002370|ref|YP_005920669.1| - 0.00092 19.7 0.1 0.0023 18.4 0.0 1.6 2 0 0 2 2 2 1 PIN domain MqsA_antitoxin PF15731.5 gi|386002371|ref|YP_005920670.1| - 0.00013 22.1 0.2 0.00014 22.0 0.2 1.1 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA YokU PF14122.6 gi|386002371|ref|YP_005920670.1| - 0.0011 18.9 0.2 0.0015 18.5 0.2 1.2 1 0 0 1 1 1 1 YokU-like protein, putative antitoxin DUF4258 PF14076.6 gi|386002372|ref|YP_005920671.1| - 3.6e-10 40.1 0.0 3.8e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) OST-HTH PF12872.7 gi|386002373|ref|YP_005920672.1| - 0.055 13.3 0.0 0.084 12.7 0.0 1.3 1 0 0 1 1 1 0 OST-HTH/LOTUS domain Gin PF10764.9 gi|386002375|ref|YP_005920674.1| - 0.034 14.1 0.3 0.062 13.3 0.3 1.4 1 0 0 1 1 1 0 Inhibitor of sigma-G Gin Stealth_CR3 PF17102.5 gi|386002375|ref|YP_005920674.1| - 0.66 9.9 5.8 0.88 9.5 1.5 2.2 2 0 0 2 2 2 0 Stealth protein CR3, conserved region 3 PIN PF01850.21 gi|386002376|ref|YP_005920675.1| - 2e-11 44.4 0.9 2.5e-11 44.2 0.9 1.0 1 0 0 1 1 1 1 PIN domain NTP_transf_2 PF01909.23 gi|386002377|ref|YP_005920676.1| - 1.5e-09 38.0 0.1 1.8e-09 37.7 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|386002377|ref|YP_005920676.1| - 1.6e-08 34.5 0.0 2.2e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF4258 PF14076.6 gi|386002378|ref|YP_005920677.1| - 2.1e-09 37.6 0.3 3.3e-09 37.0 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4258) MqsA_antitoxin PF15731.5 gi|386002379|ref|YP_005920678.1| - 0.0019 18.3 0.0 0.0021 18.2 0.0 1.1 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA Polbeta PF18765.1 gi|386002380|ref|YP_005920679.1| - 0.00053 20.0 0.0 0.00075 19.5 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|386002380|ref|YP_005920679.1| - 0.0042 17.3 0.1 0.01 16.1 0.1 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain Acylphosphatase PF00708.18 gi|386002381|ref|YP_005920680.1| - 1.1e-11 45.0 0.0 1.8e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase DUF2095 PF09868.9 gi|386002381|ref|YP_005920680.1| - 0.021 14.8 0.3 0.051 13.5 0.3 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2095) BBS2_N PF14781.6 gi|386002381|ref|YP_005920680.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, N-terminal NTP_transf_2 PF01909.23 gi|386002383|ref|YP_005920682.1| - 2.1e-09 37.6 0.0 2.2e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|386002383|ref|YP_005920682.1| - 2.1e-07 30.9 0.0 2.3e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_A PF00476.20 gi|386002384|ref|YP_005920683.1| - 6.1e-68 229.6 0.0 8.6e-68 229.1 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family A AICARFT_IMPCHas PF01808.18 gi|386002384|ref|YP_005920683.1| - 0.19 11.2 0.0 0.32 10.4 0.0 1.3 1 0 0 1 1 1 0 AICARFT/IMPCHase bienzyme Cas_Cas1 PF01867.16 gi|386002385|ref|YP_005920684.1| - 3.7e-94 315.0 0.0 5.1e-94 314.6 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Cas_Cas4 PF01930.17 gi|386002385|ref|YP_005920684.1| - 2.3e-22 79.8 0.0 4e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|386002385|ref|YP_005920684.1| - 0.0026 17.7 0.0 0.0046 16.9 0.0 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily CRISPR_Cas2 PF09827.9 gi|386002386|ref|YP_005920685.1| - 1.9e-14 53.6 0.0 2.5e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 SAVED PF18145.1 gi|386002387|ref|YP_005920686.1| - 1.2e-07 31.7 0.0 1.6e-07 31.3 0.0 1.2 1 1 0 1 1 1 1 SMODS-associated and fused to various effectors sensor domain Cas_csx3 PF09620.10 gi|386002388|ref|YP_005920687.1| - 1.4e-21 76.2 0.2 1.6e-21 75.9 0.2 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_csx3) HAS-barrel PF09378.10 gi|386002388|ref|YP_005920687.1| - 0.0014 18.8 0.0 0.79 9.9 0.0 2.1 1 1 1 2 2 2 2 HAS barrel domain Cas_APE2256 PF09651.10 gi|386002389|ref|YP_005920688.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) RAMPs PF03787.15 gi|386002390|ref|YP_005920689.1| - 1.4e-13 51.4 2.7 6.4e-13 49.2 0.7 2.5 2 1 0 2 2 2 1 RAMP superfamily Cas_Cmr5 PF09701.10 gi|386002391|ref|YP_005920690.1| - 3.7e-25 88.6 0.1 4.1e-25 88.4 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.15 gi|386002392|ref|YP_005920691.1| - 3.8e-23 82.6 0.1 7.1e-23 81.8 0.1 1.4 1 1 0 1 1 1 1 RAMP superfamily Cas_Cmr3 PF09700.10 gi|386002393|ref|YP_005920692.1| - 1.1e-56 192.9 0.0 1.3e-56 192.7 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr3) DUF3692 PF12469.8 gi|386002394|ref|YP_005920693.1| - 1.4e-06 28.5 0.0 4e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 CRISPR-associated protein mCpol PF18182.1 gi|386002394|ref|YP_005920693.1| - 2e-05 24.9 0.0 5.5e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 minimal CRISPR polymerase domain RAMPs PF03787.15 gi|386002395|ref|YP_005920694.1| - 7.6e-09 35.9 0.5 4.4e-08 33.4 0.4 2.3 2 1 0 2 2 2 1 RAMP superfamily CPSase_L_D2 PF02786.17 gi|386002397|ref|YP_005920696.1| - 2.5e-96 321.2 1.4 1.4e-57 194.6 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|386002397|ref|YP_005920696.1| - 2.8e-27 95.5 0.0 1.4e-26 93.3 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|386002397|ref|YP_005920696.1| - 5.2e-25 88.0 0.2 6.4e-12 45.4 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain MGS PF02142.22 gi|386002397|ref|YP_005920696.1| - 1.5e-20 73.2 0.1 1.4e-19 70.1 0.1 2.7 3 0 0 3 3 3 1 MGS-like domain Dala_Dala_lig_C PF07478.13 gi|386002397|ref|YP_005920696.1| - 3.7e-16 59.3 0.3 3.4e-07 30.0 0.1 2.5 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|386002397|ref|YP_005920696.1| - 5.5e-13 48.8 0.0 1.8e-06 27.7 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|386002397|ref|YP_005920696.1| - 1e-08 35.4 0.1 0.0017 18.4 0.1 2.4 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|386002397|ref|YP_005920696.1| - 4.3e-08 33.1 0.2 0.008 16.0 0.0 2.6 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|386002397|ref|YP_005920696.1| - 9.6e-07 28.5 0.0 0.055 12.9 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|386002397|ref|YP_005920696.1| - 2.6e-06 27.2 0.0 0.011 15.3 0.1 2.6 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|386002397|ref|YP_005920696.1| - 0.0043 16.3 0.0 0.66 9.2 0.0 2.7 3 0 0 3 3 3 1 Sugar-transfer associated ATP-grasp DUF4176 PF13780.6 gi|386002397|ref|YP_005920696.1| - 0.017 15.1 0.0 1.2 9.2 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4176) Jag_N PF14804.6 gi|386002397|ref|YP_005920696.1| - 0.14 12.6 0.2 2.3 8.6 0.0 3.0 3 0 0 3 3 3 0 Jag N-terminus LPG_synthase_TM PF03706.13 gi|386002398|ref|YP_005920697.1| - 2e-39 135.9 38.3 2.5e-39 135.6 38.3 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF997 PF06196.12 gi|386002398|ref|YP_005920697.1| - 5.3 7.1 10.3 2.9 8.0 4.0 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF997) Glyco_trans_1_3 PF13528.6 gi|386002399|ref|YP_005920698.1| - 9.5e-10 38.2 0.0 0.00096 18.5 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_transf_4 PF13439.6 gi|386002399|ref|YP_005920698.1| - 4.7e-05 23.4 0.0 0.00012 22.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_tran_28_C PF04101.16 gi|386002399|ref|YP_005920698.1| - 0.0005 20.1 0.0 0.00068 19.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_4_4 PF13579.6 gi|386002399|ref|YP_005920698.1| - 0.13 12.7 0.0 0.27 11.7 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|386002399|ref|YP_005920698.1| - 0.2 11.7 0.0 0.4 10.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like Methyltransf_25 PF13649.6 gi|386002400|ref|YP_005920699.1| - 3.4e-24 85.4 0.0 1.1e-23 83.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386002400|ref|YP_005920699.1| - 9.4e-23 80.7 0.0 1.6e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386002400|ref|YP_005920699.1| - 2.5e-22 79.3 0.0 3.4e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002400|ref|YP_005920699.1| - 2.9e-18 66.4 0.0 4.4e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386002400|ref|YP_005920699.1| - 1.4e-15 57.6 0.0 2.1e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386002400|ref|YP_005920699.1| - 4.6e-14 52.3 0.0 6.5e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|386002400|ref|YP_005920699.1| - 6.1e-08 32.7 0.0 8.5e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|386002400|ref|YP_005920699.1| - 7.3e-08 32.1 0.0 1.1e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|386002400|ref|YP_005920699.1| - 5.1e-07 29.3 0.0 7.4e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|386002400|ref|YP_005920699.1| - 2.9e-06 26.9 0.0 5e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|386002400|ref|YP_005920699.1| - 4.7e-06 26.0 0.0 7.2e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain RrnaAD PF00398.20 gi|386002400|ref|YP_005920699.1| - 8.3e-05 21.8 0.0 0.00011 21.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DREV PF05219.12 gi|386002400|ref|YP_005920699.1| - 0.00023 20.4 0.0 0.00034 19.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|386002400|ref|YP_005920699.1| - 0.00035 20.3 0.0 0.00047 19.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|386002400|ref|YP_005920699.1| - 0.0057 16.7 0.0 0.0087 16.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|386002400|ref|YP_005920699.1| - 0.0059 15.7 0.0 0.017 14.3 0.0 1.6 2 0 0 2 2 2 1 Fibrillarin PrmA PF06325.13 gi|386002400|ref|YP_005920699.1| - 0.0077 15.7 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|386002400|ref|YP_005920699.1| - 0.011 15.1 0.0 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB MetW PF07021.12 gi|386002400|ref|YP_005920699.1| - 0.03 13.9 0.0 0.055 13.1 0.0 1.5 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW N6_N4_Mtase PF01555.18 gi|386002400|ref|YP_005920699.1| - 0.073 12.8 0.0 0.3 10.7 0.0 1.8 2 0 0 2 2 2 0 DNA methylase Methyltransf_8 PF05148.15 gi|386002400|ref|YP_005920699.1| - 0.15 11.8 0.0 1.4 8.7 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase LigD_N PF13298.6 gi|386002401|ref|YP_005920700.1| - 4.1e-38 129.9 0.0 5.6e-38 129.4 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) TPR_1 PF00515.28 gi|386002402|ref|YP_005920701.1| - 5.9e-213 681.1 115.6 6.9e-12 44.7 0.4 24.9 24 1 1 25 25 25 23 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386002402|ref|YP_005920701.1| - 3.2e-174 564.4 142.1 1.9e-14 53.0 0.9 23.8 6 4 18 24 24 24 21 TPR repeat TPR_2 PF07719.17 gi|386002402|ref|YP_005920701.1| - 1.2e-167 530.9 109.6 1.5e-09 37.2 0.9 24.8 24 1 1 25 25 25 21 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386002402|ref|YP_005920701.1| - 7.9e-139 440.6 97.3 1.5e-07 31.1 0.3 25.1 24 1 1 25 25 25 22 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386002402|ref|YP_005920701.1| - 2.2e-131 428.2 88.9 1.1e-13 51.5 1.9 16.3 8 5 8 17 17 17 16 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386002402|ref|YP_005920701.1| - 4.2e-122 390.1 88.5 6e-07 29.4 1.2 23.6 23 0 0 23 23 23 20 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386002402|ref|YP_005920701.1| - 5e-100 319.6 61.1 0.00011 22.7 0.1 23.0 4 4 19 23 23 23 20 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386002402|ref|YP_005920701.1| - 2.9e-74 245.4 75.0 3.9e-10 39.9 1.6 15.9 6 5 9 15 15 15 12 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386002402|ref|YP_005920701.1| - 2.4e-71 236.2 66.7 5.3e-09 36.5 0.7 13.9 10 4 5 15 15 15 13 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386002402|ref|YP_005920701.1| - 3.8e-61 203.3 47.1 2.7e-07 30.7 0.1 12.0 4 2 7 12 12 12 11 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.6 gi|386002402|ref|YP_005920701.1| - 7.4e-60 199.0 33.8 1.3e-05 25.3 0.4 14.6 7 4 9 17 17 17 15 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386002402|ref|YP_005920701.1| - 2.5e-47 156.4 69.4 0.0027 18.2 0.5 23.4 24 0 0 24 24 24 12 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386002402|ref|YP_005920701.1| - 2.7e-44 146.0 50.9 0.024 14.6 0.1 20.0 19 1 1 20 20 19 11 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386002402|ref|YP_005920701.1| - 1.2e-30 104.4 90.7 0.012 15.5 0.6 21.8 22 0 0 22 22 22 9 Tetratricopeptide repeat NARP1 PF12569.8 gi|386002402|ref|YP_005920701.1| - 1.7e-29 103.1 27.5 0.00035 19.6 0.9 10.9 5 4 6 11 11 11 9 NMDA receptor-regulated protein 1 BTAD PF03704.17 gi|386002402|ref|YP_005920701.1| - 4.9e-25 88.7 25.8 0.00015 22.2 0.2 10.3 5 4 6 11 11 10 5 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|386002402|ref|YP_005920701.1| - 1e-19 71.0 28.5 0.55 10.3 0.1 17.4 3 3 12 17 17 17 1 Domain of Unknown Function (DUF3856) TPR_3 PF07720.12 gi|386002402|ref|YP_005920701.1| - 5.2e-19 67.9 79.7 0.074 13.1 0.1 19.7 19 1 1 20 20 19 6 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|386002402|ref|YP_005920701.1| - 1.4e-16 60.3 36.2 4.2 7.5 0.5 19.1 11 6 9 20 20 18 0 Anaphase-promoting complex subunit 5 MIT PF04212.18 gi|386002402|ref|YP_005920701.1| - 2.1e-13 50.1 88.3 0.099 12.7 0.3 19.5 18 3 0 21 21 20 6 MIT (microtubule interacting and transport) domain SRP_TPR_like PF17004.5 gi|386002402|ref|YP_005920701.1| - 3e-13 49.8 23.2 0.00042 20.3 0.1 9.7 4 3 5 9 9 9 4 Putative TPR-like repeat TPR_21 PF09976.9 gi|386002402|ref|YP_005920701.1| - 3.5e-13 49.7 66.1 0.074 12.7 0.7 15.3 5 4 10 15 15 15 6 Tetratricopeptide repeat-like domain PPR PF01535.20 gi|386002402|ref|YP_005920701.1| - 1.2e-12 47.1 1.4 57 4.3 0.0 13.8 15 0 0 15 15 12 0 PPR repeat TPR_4 PF07721.14 gi|386002402|ref|YP_005920701.1| - 1.5e-12 46.9 0.1 36 5.4 0.2 11.6 12 0 0 12 12 9 0 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|386002402|ref|YP_005920701.1| - 3.9e-12 46.5 32.2 0.002 18.1 0.8 10.2 3 2 6 10 10 9 3 Virulence factor membrane-bound polymerase, C-terminal TPR_MalT PF17874.1 gi|386002402|ref|YP_005920701.1| - 1.1e-11 44.8 2.2 1.4 8.2 0.0 8.8 4 3 5 9 9 9 3 MalT-like TPR region DUF5113 PF17140.4 gi|386002402|ref|YP_005920701.1| - 3.1e-09 36.8 46.4 0.47 10.2 0.2 13.5 5 4 8 14 14 13 4 Domain of unknown function (DUF5113) TPR_20 PF14561.6 gi|386002402|ref|YP_005920701.1| - 3.1e-06 27.4 33.4 2 8.8 0.0 11.5 4 2 8 14 14 12 2 Tetratricopeptide repeat NRBF2_MIT PF17169.4 gi|386002402|ref|YP_005920701.1| - 9.5e-05 22.6 19.6 1.9 8.8 0.1 12.8 13 3 3 17 17 14 1 MIT domain of nuclear receptor-binding factor 2 PPR_2 PF13041.6 gi|386002402|ref|YP_005920701.1| - 0.00049 20.2 14.1 91 3.4 0.0 11.6 14 0 0 14 14 10 0 PPR repeat family DUF627 PF04781.12 gi|386002402|ref|YP_005920701.1| - 0.0042 17.1 6.3 20 5.3 0.0 7.4 9 1 1 10 10 7 0 Protein of unknown function (DUF627) Ribosomal_S16 PF00886.19 gi|386002402|ref|YP_005920701.1| - 0.0049 16.9 28.2 15 5.7 0.1 11.8 8 4 3 11 11 9 0 Ribosomal protein S16 Fis1_TPR_C PF14853.6 gi|386002402|ref|YP_005920701.1| - 0.0055 16.7 44.1 0.33 11.1 0.1 13.9 19 0 0 19 19 12 2 Fis1 C-terminal tetratricopeptide repeat TOM20_plant PF06552.12 gi|386002402|ref|YP_005920701.1| - 0.0079 16.0 25.7 1.9 8.2 0.4 9.4 3 2 8 12 12 12 1 Plant specific mitochondrial import receptor subunit TOM20 Coatomer_E PF04733.14 gi|386002402|ref|YP_005920701.1| - 0.011 15.1 11.3 0.096 12.1 0.1 5.6 5 1 1 6 6 6 0 Coatomer epsilon subunit TetR_C_15 PF17918.1 gi|386002402|ref|YP_005920701.1| - 0.017 15.9 4.0 30 5.4 0.0 6.7 7 1 2 9 9 7 0 Tetracyclin repressor-like, C-terminal domain DUF3808 PF10300.9 gi|386002402|ref|YP_005920701.1| - 0.021 13.6 2.5 11 4.6 0.1 4.8 3 2 0 4 4 4 0 Protein of unknown function (DUF3808) CBAH PF02275.18 gi|386002402|ref|YP_005920701.1| - 0.051 13.2 0.1 0.51 9.9 0.0 2.6 1 1 1 2 2 2 0 Linear amide C-N hydrolases, choloylglycine hydrolase family Rota_NSP3 PF01665.16 gi|386002402|ref|YP_005920701.1| - 0.067 12.3 3.4 10 5.1 0.1 4.5 3 2 1 5 5 5 0 Rotavirus non-structural protein NSP3 P2_Phage_GpR PF06891.11 gi|386002402|ref|YP_005920701.1| - 0.072 13.2 1.5 66 3.6 0.0 5.2 4 2 3 7 7 5 0 P2 phage tail completion protein R (GpR) ChAPs PF09295.10 gi|386002402|ref|YP_005920701.1| - 0.14 11.1 2.6 80 2.1 0.0 4.6 2 2 2 5 5 5 0 ChAPs (Chs5p-Arf1p-binding proteins) MAS20 PF02064.15 gi|386002402|ref|YP_005920701.1| - 0.3 11.2 2.0 1.9e+02 2.1 0.0 6.1 8 0 0 8 8 3 0 MAS20 protein import receptor SHNi-TPR PF10516.9 gi|386002402|ref|YP_005920701.1| - 0.3 10.6 0.0 0.3 10.6 0.0 12.1 16 0 0 16 16 12 0 SHNi-TPR BPS PF08947.10 gi|386002402|ref|YP_005920701.1| - 0.43 10.4 16.5 23 4.9 0.0 9.0 11 2 2 13 13 9 0 BPS (Between PH and SH2) PknG_TPR PF16918.5 gi|386002402|ref|YP_005920701.1| - 0.59 8.8 13.3 0.49 9.1 0.2 4.9 2 1 2 5 5 5 0 Protein kinase G tetratricopeptide repeat YozE_SAM_like PF06855.12 gi|386002402|ref|YP_005920701.1| - 1.1 9.4 9.2 3.6e+02 1.4 0.0 7.8 9 0 0 9 9 7 0 YozE SAM-like fold FAT PF02259.23 gi|386002402|ref|YP_005920701.1| - 6.1 6.0 30.4 6 6.0 1.3 8.5 2 2 3 5 5 5 0 FAT domain Radical_SAM PF04055.21 gi|386002403|ref|YP_005920702.1| - 1.7e-10 41.6 0.7 1.2e-09 38.8 0.7 2.3 1 1 0 1 1 1 1 Radical SAM superfamily NIL PF09383.10 gi|386002403|ref|YP_005920702.1| - 0.022 14.6 0.0 0.045 13.6 0.0 1.5 1 0 0 1 1 1 0 NIL domain Hist_deacetyl PF00850.19 gi|386002404|ref|YP_005920703.1| - 4.4e-32 111.8 2.0 3.2e-24 86.0 0.1 3.1 2 1 1 3 3 3 3 Histone deacetylase domain Desulfoferrod_N PF06397.12 gi|386002405|ref|YP_005920704.1| - 4.6e-17 61.3 7.9 4.9e-17 61.3 7.9 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain zf-RRN7 PF11781.8 gi|386002405|ref|YP_005920704.1| - 0.00087 18.9 0.2 0.0012 18.5 0.2 1.2 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 A2L_zn_ribbon PF08792.10 gi|386002405|ref|YP_005920704.1| - 0.0069 16.1 0.3 0.12 12.1 0.7 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain DUF1922 PF09082.10 gi|386002405|ref|YP_005920704.1| - 0.019 15.2 0.7 0.02 15.2 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) DUF3449 PF11931.8 gi|386002405|ref|YP_005920704.1| - 0.14 11.9 0.1 0.15 11.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) CitG PF01874.16 gi|386002407|ref|YP_005920706.1| - 1.6e-65 221.5 1.4 1.8e-65 221.4 1.4 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|386002408|ref|YP_005920707.1| - 4e-47 160.2 0.1 4.6e-47 160.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Rad51 PF08423.11 gi|386002409|ref|YP_005920708.1| - 4.3e-34 117.9 0.1 5.3e-34 117.6 0.1 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|386002409|ref|YP_005920708.1| - 1.4e-09 37.8 0.2 1.9e-09 37.4 0.2 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|386002409|ref|YP_005920708.1| - 3.5e-09 36.3 4.3 9.7e-09 34.9 4.3 1.9 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|386002409|ref|YP_005920708.1| - 5.9e-08 32.5 0.1 1.1e-07 31.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain Zot PF05707.12 gi|386002409|ref|YP_005920708.1| - 1.8e-07 31.0 0.0 2.1e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.6 gi|386002409|ref|YP_005920708.1| - 8.4e-07 28.9 0.0 1.2e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|386002409|ref|YP_005920708.1| - 0.00041 20.8 0.1 0.0011 19.4 0.1 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DnaB_C PF03796.15 gi|386002409|ref|YP_005920708.1| - 0.0025 17.2 0.1 0.43 9.9 0.0 2.3 1 1 0 2 2 2 1 DnaB-like helicase C terminal domain TrwB_AAD_bind PF10412.9 gi|386002409|ref|YP_005920708.1| - 0.0054 15.7 0.3 0.0098 14.8 0.2 1.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.16 gi|386002409|ref|YP_005920708.1| - 0.015 14.7 0.3 0.03 13.8 0.3 1.4 1 0 0 1 1 1 0 PhoH-like protein ATPase_2 PF01637.18 gi|386002409|ref|YP_005920708.1| - 0.016 15.1 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|386002409|ref|YP_005920708.1| - 0.016 15.5 0.0 0.027 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|386002409|ref|YP_005920708.1| - 0.018 15.4 0.5 0.025 15.0 0.5 1.5 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|386002409|ref|YP_005920708.1| - 0.02 14.5 0.1 0.039 13.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|386002409|ref|YP_005920708.1| - 0.029 14.4 0.6 0.034 14.2 0.6 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.17 gi|386002409|ref|YP_005920708.1| - 0.031 14.0 0.5 0.13 11.9 0.2 1.9 1 1 1 2 2 2 0 IstB-like ATP binding protein DAP3 PF10236.9 gi|386002409|ref|YP_005920708.1| - 0.038 13.2 0.2 0.11 11.7 0.1 1.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_30 PF13604.6 gi|386002409|ref|YP_005920708.1| - 0.057 13.1 0.1 0.086 12.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain CobA_CobO_BtuR PF02572.15 gi|386002409|ref|YP_005920708.1| - 0.072 13.3 0.8 0.39 11.0 0.4 2.1 2 1 0 2 2 2 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NTPase_1 PF03266.15 gi|386002409|ref|YP_005920708.1| - 0.11 12.4 0.2 0.16 11.8 0.2 1.3 1 0 0 1 1 1 0 NTPase CobU PF02283.16 gi|386002409|ref|YP_005920708.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase NB-ARC PF00931.22 gi|386002409|ref|YP_005920708.1| - 0.11 11.6 0.2 0.17 11.1 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF815 PF05673.13 gi|386002409|ref|YP_005920708.1| - 0.18 11.0 0.0 0.31 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|386002409|ref|YP_005920708.1| - 0.22 10.7 0.3 0.29 10.3 0.3 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PFU PF09070.11 gi|386002410|ref|YP_005920709.1| - 0.013 15.8 4.9 4.6 7.6 0.0 4.1 3 1 1 4 4 4 0 PFU (PLAA family ubiquitin binding) US22 PF02393.16 gi|386002410|ref|YP_005920709.1| - 0.14 12.4 0.1 4.7 7.5 0.0 2.8 2 1 1 3 3 3 0 US22 like Kelch_3 PF13415.6 gi|386002410|ref|YP_005920709.1| - 3.3 8.1 13.1 46 4.5 0.0 5.4 4 2 2 6 6 6 0 Galactose oxidase, central domain CoA_binding_2 PF13380.6 gi|386002411|ref|YP_005920710.1| - 2.4e-29 102.1 0.0 2.8e-29 102.0 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|386002411|ref|YP_005920710.1| - 9.6e-05 23.0 0.0 0.00014 22.5 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain STT3 PF02516.14 gi|386002412|ref|YP_005920711.1| - 1.6e-25 90.0 16.8 2.7e-24 86.0 16.8 2.2 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|386002412|ref|YP_005920711.1| - 1.8e-14 53.8 0.1 2.8e-14 53.2 0.1 1.3 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain PMT_2 PF13231.6 gi|386002412|ref|YP_005920711.1| - 1.3e-10 41.7 8.4 1.3e-10 41.7 8.4 3.5 2 2 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|386002412|ref|YP_005920711.1| - 2.1 7.8 12.5 0.02 14.5 4.1 2.0 2 1 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase HAD PF12710.7 gi|386002413|ref|YP_005920712.1| - 1.6e-18 67.8 0.3 3.4e-18 66.7 0.1 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|386002413|ref|YP_005920712.1| - 6.9e-18 65.7 0.3 1.2e-17 64.9 0.3 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ACT_6 PF13740.6 gi|386002413|ref|YP_005920712.1| - 2e-13 50.1 2.3 1.3e-09 37.9 0.2 2.5 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|386002413|ref|YP_005920712.1| - 1.8e-10 40.4 1.8 1.2e-05 24.9 0.4 2.7 2 0 0 2 2 2 2 ACT domain Hydrolase_3 PF08282.12 gi|386002413|ref|YP_005920712.1| - 1.1e-09 38.4 1.8 7.4e-09 35.7 0.3 2.6 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|386002413|ref|YP_005920712.1| - 2.3e-09 37.0 0.0 3e-07 30.1 0.0 2.2 2 0 0 2 2 2 1 Putative Phosphatase HAD_2 PF13419.6 gi|386002413|ref|YP_005920712.1| - 5.9e-08 33.0 0.2 4.7e-07 30.1 0.2 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase ACT_4 PF13291.6 gi|386002413|ref|YP_005920712.1| - 6.5e-08 33.1 2.0 0.018 15.7 0.1 3.1 3 0 0 3 3 3 2 ACT domain S6PP PF05116.13 gi|386002413|ref|YP_005920712.1| - 0.1 12.1 0.1 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase YkuD_2 PF13645.6 gi|386002413|ref|YP_005920712.1| - 0.22 11.0 0.0 0.37 10.2 0.0 1.3 1 0 0 1 1 1 0 L,D-transpeptidase catalytic domain DUF3502 PF12010.8 gi|386002413|ref|YP_005920712.1| - 0.25 12.0 0.2 1.6 9.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3502) Ribosomal_S19e PF01090.19 gi|386002414|ref|YP_005920713.1| - 4.5e-56 188.4 0.0 5.1e-56 188.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|386002414|ref|YP_005920713.1| - 0.023 14.6 0.0 0.31 11.0 0.0 2.2 1 1 1 2 2 2 0 RuvB C-terminal winged helix domain GntR PF00392.21 gi|386002414|ref|YP_005920713.1| - 0.042 13.5 0.0 0.094 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|386002414|ref|YP_005920713.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain dsDNA_bind PF01984.20 gi|386002415|ref|YP_005920714.1| - 1.9e-30 105.4 19.4 2.1e-30 105.3 19.4 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF945 PF06097.11 gi|386002415|ref|YP_005920714.1| - 0.49 9.4 5.7 0.55 9.3 5.7 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) DUF4355 PF14265.6 gi|386002415|ref|YP_005920714.1| - 0.71 10.1 11.8 0.32 11.2 9.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4355) DUF2924 PF11149.8 gi|386002415|ref|YP_005920714.1| - 2.9 8.3 6.9 3.4 8.1 6.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2924) HIP1_clath_bdg PF16515.5 gi|386002415|ref|YP_005920714.1| - 8.7 7.0 16.6 2.5 8.8 12.3 1.9 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Asn_synthase PF00733.21 gi|386002416|ref|YP_005920715.1| - 5.5e-06 26.3 0.2 0.00028 20.7 0.1 2.1 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.13 gi|386002416|ref|YP_005920715.1| - 0.00081 18.9 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|386002416|ref|YP_005920715.1| - 0.018 14.5 0.0 0.028 13.9 0.0 1.5 1 1 0 1 1 1 0 Diphthamide synthase ThiI PF02568.14 gi|386002416|ref|YP_005920715.1| - 0.077 12.6 0.0 2.4 7.7 0.0 2.2 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|386002416|ref|YP_005920715.1| - 0.086 11.6 0.0 0.17 10.6 0.0 1.5 1 1 0 1 1 1 0 tRNA methyl transferase Ribosomal_L39 PF00832.20 gi|386002417|ref|YP_005920716.1| - 1.4e-20 72.6 7.1 1.7e-20 72.3 7.1 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|386002418|ref|YP_005920717.1| - 1.4e-13 50.8 0.7 1.8e-13 50.5 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|386002419|ref|YP_005920718.1| - 2.2e-66 223.0 0.0 2.5e-66 222.8 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|386002420|ref|YP_005920719.1| - 1.2e-09 38.3 0.1 1.4e-09 38.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A DUF3808 PF10300.9 gi|386002420|ref|YP_005920719.1| - 0.047 12.4 0.1 0.047 12.4 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3808) Prefoldin PF02996.17 gi|386002421|ref|YP_005920720.1| - 1.9e-22 79.4 3.3 2.3e-22 79.1 3.3 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|386002421|ref|YP_005920720.1| - 3.2e-05 23.8 5.9 0.001 19.0 1.5 2.1 1 1 1 2 2 2 2 Prefoldin subunit Trimer_CC PF08954.11 gi|386002421|ref|YP_005920720.1| - 0.0078 15.7 6.5 0.14 11.8 0.2 2.6 2 1 0 2 2 2 2 Trimerisation motif Amidase PF01425.21 gi|386002421|ref|YP_005920720.1| - 0.027 13.5 0.2 0.03 13.3 0.2 1.0 1 0 0 1 1 1 0 Amidase CdvA PF18822.1 gi|386002421|ref|YP_005920720.1| - 0.058 13.2 3.6 0.07 13.0 1.1 2.0 2 0 0 2 2 2 0 CdvA-like coiled-coil domain V-SNARE PF05008.15 gi|386002421|ref|YP_005920720.1| - 0.12 12.8 7.2 2 8.8 1.5 2.5 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF5446 PF17522.2 gi|386002421|ref|YP_005920720.1| - 0.12 12.5 0.2 0.12 12.5 0.2 1.9 2 1 1 3 3 3 0 Family of unknown function (DUF5446) Seryl_tRNA_N PF02403.22 gi|386002421|ref|YP_005920720.1| - 0.17 12.1 4.6 0.44 10.8 1.3 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain MerR-DNA-bind PF09278.11 gi|386002421|ref|YP_005920720.1| - 0.24 11.9 5.6 9.6 6.8 0.1 2.4 2 0 0 2 2 2 0 MerR, DNA binding APG6_N PF17675.1 gi|386002421|ref|YP_005920720.1| - 0.52 10.8 8.4 0.41 11.2 1.6 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region T3SS_needle_E PF08988.10 gi|386002421|ref|YP_005920720.1| - 0.6 10.3 9.7 0.16 12.1 0.9 2.6 2 1 1 3 3 3 0 Type III secretion system, cytoplasmic E component of needle SRP54 PF00448.22 gi|386002422|ref|YP_005920721.1| - 4.9e-72 241.7 0.1 6.8e-72 241.2 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|386002422|ref|YP_005920721.1| - 4.8e-13 49.1 1.6 1.5e-12 47.5 1.6 1.9 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_17 PF13207.6 gi|386002422|ref|YP_005920721.1| - 4.8e-07 30.3 0.6 1.2e-06 29.0 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|386002422|ref|YP_005920721.1| - 6.3e-07 29.3 0.2 1.3e-06 28.3 0.2 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|386002422|ref|YP_005920721.1| - 0.00024 20.4 0.1 0.00044 19.6 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin T2SSE PF00437.20 gi|386002422|ref|YP_005920721.1| - 0.00029 20.0 0.8 0.026 13.6 0.0 2.2 1 1 1 2 2 2 1 Type II/IV secretion system protein Thymidylate_kin PF02223.17 gi|386002422|ref|YP_005920721.1| - 0.00035 20.3 0.1 0.0041 16.8 0.1 2.4 2 1 0 2 2 2 1 Thymidylate kinase APS_kinase PF01583.20 gi|386002422|ref|YP_005920721.1| - 0.002 18.1 0.0 0.0038 17.1 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_28 PF13521.6 gi|386002422|ref|YP_005920721.1| - 0.0022 18.3 0.8 0.0043 17.3 0.0 1.9 2 0 0 2 2 1 1 AAA domain MobB PF03205.14 gi|386002422|ref|YP_005920721.1| - 0.0024 17.8 0.9 0.015 15.2 0.1 2.4 1 1 2 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.29 gi|386002422|ref|YP_005920721.1| - 0.0024 18.3 0.1 0.0063 16.9 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|386002422|ref|YP_005920721.1| - 0.0026 17.8 0.0 0.0057 16.7 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.6 gi|386002422|ref|YP_005920721.1| - 0.0033 17.6 0.0 0.0067 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|386002422|ref|YP_005920721.1| - 0.0046 17.3 0.2 0.0079 16.5 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|386002422|ref|YP_005920721.1| - 0.0047 17.3 0.2 0.0047 17.3 0.2 2.3 2 2 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|386002422|ref|YP_005920721.1| - 0.0051 17.1 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain LpxK PF02606.14 gi|386002422|ref|YP_005920721.1| - 0.01 15.0 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase NTPase_1 PF03266.15 gi|386002422|ref|YP_005920721.1| - 0.011 15.7 0.7 0.027 14.4 0.1 1.9 2 0 0 2 2 2 0 NTPase 6PF2K PF01591.18 gi|386002422|ref|YP_005920721.1| - 0.013 14.8 0.1 0.024 13.9 0.1 1.4 1 1 0 1 1 1 0 6-phosphofructo-2-kinase ResIII PF04851.15 gi|386002422|ref|YP_005920721.1| - 0.016 15.2 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit KTI12 PF08433.10 gi|386002422|ref|YP_005920721.1| - 0.024 14.1 0.1 0.046 13.2 0.1 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MeaB PF03308.16 gi|386002422|ref|YP_005920721.1| - 0.029 13.4 0.0 0.063 12.3 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB LytR_C PF13399.6 gi|386002422|ref|YP_005920721.1| - 0.038 15.0 2.6 0.058 14.4 0.0 2.6 3 0 0 3 3 2 0 LytR cell envelope-related transcriptional attenuator ABC_tran PF00005.27 gi|386002422|ref|YP_005920721.1| - 0.045 14.3 0.0 0.13 12.8 0.0 1.8 2 1 0 2 2 2 0 ABC transporter AAA_7 PF12775.7 gi|386002422|ref|YP_005920721.1| - 0.054 13.0 0.0 0.095 12.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|386002422|ref|YP_005920721.1| - 0.06 13.4 0.4 0.24 11.5 0.4 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase SurA_N PF09312.11 gi|386002422|ref|YP_005920721.1| - 0.069 13.2 1.3 0.13 12.3 0.1 2.0 2 0 0 2 2 1 0 SurA N-terminal domain AAA_24 PF13479.6 gi|386002422|ref|YP_005920721.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|386002422|ref|YP_005920721.1| - 0.13 12.3 0.0 0.41 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF2075 PF09848.9 gi|386002422|ref|YP_005920721.1| - 0.16 11.2 0.3 0.27 10.4 0.3 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PIN_5 PF08745.11 gi|386002423|ref|YP_005920722.1| - 1.9e-89 298.6 0.0 2.2e-89 298.4 0.0 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease NRD1_2 PF01995.16 gi|386002424|ref|YP_005920723.1| - 1.7e-81 273.0 0.1 1.9e-81 272.9 0.1 1.0 1 0 0 1 1 1 1 NrpR regulatory domains NRD1 and 2 HHH_8 PF14716.6 gi|386002425|ref|YP_005920724.1| - 4.9e-23 81.3 2.7 1.9e-22 79.4 0.3 3.0 4 0 0 4 4 3 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.6 gi|386002425|ref|YP_005920724.1| - 2.6e-20 72.3 0.0 6.7e-20 71.0 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_5 PF14520.6 gi|386002425|ref|YP_005920724.1| - 8.6e-12 45.5 1.9 3.3e-07 30.8 0.0 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix domain PHP PF02811.19 gi|386002425|ref|YP_005920724.1| - 2e-07 31.4 0.2 4.2e-07 30.4 0.2 1.5 1 0 0 1 1 1 1 PHP domain HHH PF00633.23 gi|386002425|ref|YP_005920724.1| - 6.2e-06 25.8 3.4 0.032 14.1 0.2 3.7 4 0 0 4 4 4 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|386002425|ref|YP_005920724.1| - 9.1e-06 25.9 0.0 2.3e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta palm HHH_3 PF12836.7 gi|386002425|ref|YP_005920724.1| - 0.0012 19.1 0.9 1.8 8.9 0.0 3.7 3 1 1 4 4 4 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|386002425|ref|YP_005920724.1| - 0.0076 16.3 0.1 0.12 12.5 0.0 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix motif Cu-oxidase_4 PF02578.15 gi|386002425|ref|YP_005920724.1| - 0.013 15.2 0.1 0.027 14.1 0.1 1.4 1 0 0 1 1 1 0 Multi-copper polyphenol oxidoreductase laccase DUF3701 PF12482.8 gi|386002425|ref|YP_005920724.1| - 0.014 15.5 0.2 2.9 8.0 0.0 2.9 2 0 0 2 2 2 0 Phage integrase protein Cdd1 PF11731.8 gi|386002425|ref|YP_005920724.1| - 0.015 15.5 0.0 5.8 7.2 0.0 2.6 2 0 0 2 2 2 0 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|386002425|ref|YP_005920724.1| - 0.028 14.2 0.0 0.22 11.4 0.0 2.4 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda NTP_transf_2 PF01909.23 gi|386002425|ref|YP_005920724.1| - 0.098 13.0 0.0 0.33 11.3 0.0 1.9 2 0 0 2 2 2 0 Nucleotidyltransferase domain NAD_binding_10 PF13460.6 gi|386002425|ref|YP_005920724.1| - 0.11 12.4 0.1 0.56 10.1 0.0 2.0 2 0 0 2 2 2 0 NAD(P)H-binding I-set PF07679.16 gi|386002426|ref|YP_005920725.1| - 0.099 12.7 0.1 0.2 11.8 0.1 1.4 2 0 0 2 2 2 0 Immunoglobulin I-set domain Radical_SAM PF04055.21 gi|386002427|ref|YP_005920726.1| - 5.5e-07 30.1 0.0 1.5e-06 28.7 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|386002427|ref|YP_005920726.1| - 0.017 15.2 0.0 0.036 14.2 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain SBP_bac_5 PF00496.22 gi|386002428|ref|YP_005920727.1| - 4.7e-77 259.5 0.1 8.2e-77 258.7 0.1 1.4 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Flavin_Reduct PF01613.18 gi|386002429|ref|YP_005920728.1| - 2.3e-17 63.4 0.0 2.9e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.12 gi|386002429|ref|YP_005920728.1| - 3.2e-05 23.8 0.0 7.1e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF447) TrmO PF01980.16 gi|386002430|ref|YP_005920729.1| - 2.8e-28 98.5 0.0 3.3e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O ADH_N_assoc PF13823.6 gi|386002430|ref|YP_005920729.1| - 0.25 11.3 1.3 3.2 7.8 0.1 2.3 2 0 0 2 2 2 0 Alcohol dehydrogenase GroES-associated Cuticle_1 PF08140.11 gi|386002431|ref|YP_005920730.1| - 0.073 13.1 0.0 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 Crustacean cuticle protein repeat ImmE5 PF11480.8 gi|386002431|ref|YP_005920730.1| - 0.13 12.8 0.0 0.39 11.2 0.0 1.8 1 1 1 2 2 2 0 Colicin-E5 Imm protein DUF772 PF05598.11 gi|386002432|ref|YP_005920731.1| - 6.2e-22 77.4 0.1 1.5e-21 76.2 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|386002432|ref|YP_005920731.1| - 2.1e-14 53.7 0.4 5.3e-14 52.4 0.4 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|386002432|ref|YP_005920731.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease Isochorismatase PF00857.20 gi|386002434|ref|YP_005920733.1| - 2e-24 86.7 0.0 3.8e-24 85.8 0.0 1.4 1 1 0 1 1 1 1 Isochorismatase family tRNA-synt_1 PF00133.22 gi|386002435|ref|YP_005920734.1| - 8.5e-57 192.7 0.0 1.3e-43 149.2 0.0 3.1 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|386002435|ref|YP_005920734.1| - 9.4e-23 80.6 0.1 2e-10 40.0 0.0 2.9 2 1 0 2 2 2 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|386002435|ref|YP_005920734.1| - 1.1e-21 77.4 0.0 2e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|386002435|ref|YP_005920734.1| - 1e-07 31.7 0.0 2.1e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|386002435|ref|YP_005920734.1| - 2.2e-06 27.2 0.0 0.001 18.5 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DUF406 PF04175.12 gi|386002435|ref|YP_005920734.1| - 0.021 15.3 0.1 0.073 13.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF406) tRNA-synt_1f PF01921.18 gi|386002435|ref|YP_005920734.1| - 0.028 13.3 0.1 0.081 11.8 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF1858 PF08984.11 gi|386002435|ref|YP_005920734.1| - 0.07 13.3 0.0 11 6.3 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1858) RsbRD_N PF14361.6 gi|386002435|ref|YP_005920734.1| - 0.094 13.4 0.1 0.32 11.7 0.1 1.9 1 0 0 1 1 1 0 RsbT co-antagonist protein rsbRD N-terminal domain Aminotran_1_2 PF00155.21 gi|386002436|ref|YP_005920735.1| - 4.4e-63 213.6 0.0 5e-63 213.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DEAD PF00270.29 gi|386002437|ref|YP_005920736.1| - 9.5e-22 77.6 0.0 2.2e-21 76.4 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|386002437|ref|YP_005920736.1| - 1.9e-09 38.0 1.5 9.2e-09 35.8 1.5 2.3 1 0 0 1 1 1 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|386002437|ref|YP_005920736.1| - 2.2e-09 37.5 0.0 3.7e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|386002437|ref|YP_005920736.1| - 1.3e-06 28.8 0.0 1.4e-05 25.4 0.0 2.6 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|386002437|ref|YP_005920736.1| - 0.0002 21.1 0.1 0.0019 18.0 0.0 2.6 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|386002437|ref|YP_005920736.1| - 0.0006 19.9 0.1 0.0017 18.4 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|386002437|ref|YP_005920736.1| - 0.2 11.6 0.8 1.3 9.0 0.0 2.7 2 1 0 2 2 2 0 Helix-hairpin-helix motif Radical_SAM PF04055.21 gi|386002438|ref|YP_005920737.1| - 1.8e-17 64.2 0.0 3.3e-17 63.4 0.0 1.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|386002438|ref|YP_005920737.1| - 1.2e-08 35.3 0.0 1.7e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|386002438|ref|YP_005920737.1| - 7.7e-05 22.8 0.0 0.00013 22.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain AAA_17 PF13207.6 gi|386002439|ref|YP_005920738.1| - 1.9e-14 54.2 0.0 3.2e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|386002439|ref|YP_005920738.1| - 3.2e-11 43.9 0.0 4.3e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|386002439|ref|YP_005920738.1| - 9.5e-09 35.6 0.0 1.2e-08 35.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain PEP-utilizers PF00391.23 gi|386002439|ref|YP_005920738.1| - 0.0016 18.1 1.0 0.0029 17.3 0.4 1.6 1 1 0 1 1 1 1 PEP-utilising enzyme, mobile domain CoaE PF01121.20 gi|386002439|ref|YP_005920738.1| - 0.025 14.3 0.1 0.14 11.8 0.0 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase ADK PF00406.22 gi|386002439|ref|YP_005920738.1| - 0.027 14.6 0.1 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Adenylate kinase AAA_16 PF13191.6 gi|386002440|ref|YP_005920739.1| - 2.5e-10 41.0 0.0 3.8e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain DUF3666 PF12408.8 gi|386002440|ref|YP_005920739.1| - 0.023 13.9 0.4 1.8 7.9 0.2 3.4 3 1 0 3 3 3 0 Ribose-5-phosphate isomerase KAP_NTPase PF07693.14 gi|386002440|ref|YP_005920739.1| - 0.63 9.2 3.3 1.4 8.1 3.3 1.7 1 1 0 1 1 1 0 KAP family P-loop domain TPR_1 PF00515.28 gi|386002441|ref|YP_005920740.1| - 6.9e-53 174.4 20.0 4.3e-10 39.0 0.0 9.7 9 1 1 10 10 10 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386002441|ref|YP_005920740.1| - 2e-46 152.4 25.3 3.3e-08 33.0 0.0 9.8 10 0 0 10 10 10 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386002441|ref|YP_005920740.1| - 3.1e-44 145.5 23.9 2.1e-08 33.7 0.0 9.5 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386002441|ref|YP_005920740.1| - 8.4e-43 143.8 18.6 9.6e-09 34.8 0.0 9.1 2 1 7 9 9 9 7 TPR repeat TPR_17 PF13431.6 gi|386002441|ref|YP_005920740.1| - 3e-39 130.6 12.6 5.5e-05 23.3 0.0 8.3 9 0 0 9 9 7 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386002441|ref|YP_005920740.1| - 6.9e-34 116.0 31.2 2.7e-11 43.6 0.4 7.7 2 1 6 8 8 8 7 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386002441|ref|YP_005920740.1| - 1.2e-25 89.8 25.3 9.3e-10 39.0 0.7 5.5 2 1 3 6 6 6 5 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386002441|ref|YP_005920740.1| - 6.9e-25 85.6 30.4 7.6e-05 23.2 0.8 8.6 2 2 7 9 9 9 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386002441|ref|YP_005920740.1| - 1.3e-21 76.5 9.3 1.3e-07 31.6 0.8 5.8 2 1 3 6 6 6 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386002441|ref|YP_005920740.1| - 3.7e-19 69.0 23.1 8.4e-05 23.0 0.4 6.3 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386002441|ref|YP_005920740.1| - 4.7e-17 61.4 13.3 0.0036 17.8 0.0 8.8 7 1 1 8 8 7 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386002441|ref|YP_005920740.1| - 1.9e-16 58.8 11.2 0.0028 17.6 0.0 7.5 7 1 0 7 7 7 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386002441|ref|YP_005920740.1| - 3.4e-16 58.5 23.4 0.00078 19.2 0.1 8.5 9 0 0 9 9 8 4 Tetratricopeptide repeat BTAD PF03704.17 gi|386002441|ref|YP_005920740.1| - 6.8e-13 49.3 10.7 0.00048 20.6 0.1 4.3 1 1 2 4 4 4 4 Bacterial transcriptional activator domain ANAPC3 PF12895.7 gi|386002441|ref|YP_005920740.1| - 1e-11 44.9 7.4 7.5e-06 26.1 0.2 4.1 4 0 0 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.7 gi|386002441|ref|YP_005920740.1| - 2.5e-11 43.8 10.1 0.00049 20.2 0.1 6.2 1 1 4 5 5 5 3 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|386002441|ref|YP_005920740.1| - 4.2e-10 39.2 7.2 0.0034 16.4 0.1 3.7 1 1 3 4 4 4 4 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|386002441|ref|YP_005920740.1| - 5.6e-09 35.6 13.8 6.3e-05 22.3 0.3 3.2 1 1 2 3 3 3 2 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|386002441|ref|YP_005920740.1| - 1.1e-06 28.7 7.5 0.00035 20.5 0.0 4.4 1 1 2 4 4 4 1 Virulence factor membrane-bound polymerase, C-terminal TPR_4 PF07721.14 gi|386002441|ref|YP_005920740.1| - 4.6e-06 26.7 8.9 8.3 7.4 0.0 7.7 8 1 1 9 9 7 0 Tetratricopeptide repeat TPR_5 PF12688.7 gi|386002441|ref|YP_005920740.1| - 4.1e-05 23.8 7.4 1.5 9.1 0.0 4.9 2 2 4 6 6 6 2 Tetratrico peptide repeat FAT PF02259.23 gi|386002441|ref|YP_005920740.1| - 0.00025 20.4 3.8 0.36 10.0 0.2 4.3 1 1 3 4 4 4 1 FAT domain Alkyl_sulf_dimr PF14863.6 gi|386002441|ref|YP_005920740.1| - 0.0071 16.8 3.3 6.4 7.2 0.0 4.0 1 1 0 3 3 3 0 Alkyl sulfatase dimerisation Coatomer_E PF04733.14 gi|386002441|ref|YP_005920740.1| - 0.0083 15.6 4.5 2.1 7.7 0.0 3.8 1 1 4 5 5 5 1 Coatomer epsilon subunit DUF5113 PF17140.4 gi|386002441|ref|YP_005920740.1| - 0.016 15.0 4.3 5.4 6.8 0.0 4.1 2 1 2 4 4 4 0 Domain of unknown function (DUF5113) ChAPs PF09295.10 gi|386002441|ref|YP_005920740.1| - 0.017 14.2 0.4 0.65 8.9 0.1 2.7 2 1 1 3 3 3 0 ChAPs (Chs5p-Arf1p-binding proteins) ANAPC5 PF12862.7 gi|386002441|ref|YP_005920740.1| - 0.033 14.3 2.5 21 5.2 0.1 4.4 2 2 1 4 4 4 0 Anaphase-promoting complex subunit 5 PPR PF01535.20 gi|386002441|ref|YP_005920740.1| - 0.043 14.1 5.9 45 4.6 0.0 5.8 7 0 0 7 7 5 0 PPR repeat Paz_1 PF18349.1 gi|386002441|ref|YP_005920740.1| - 0.05 13.6 0.0 0.67 10.0 0.0 2.7 3 0 0 3 3 3 0 PAZ domain MIT PF04212.18 gi|386002441|ref|YP_005920740.1| - 0.061 13.4 6.5 6.9 6.8 0.1 4.9 3 2 1 4 4 4 0 MIT (microtubule interacting and transport) domain TruB_N PF01509.18 gi|386002441|ref|YP_005920740.1| - 0.075 13.4 0.0 18 5.7 0.0 2.6 1 1 1 2 2 2 0 TruB family pseudouridylate synthase (N terminal domain) RPN7 PF10602.9 gi|386002441|ref|YP_005920740.1| - 0.21 11.3 5.4 5.9 6.6 0.0 4.2 2 2 3 5 5 5 0 26S proteasome subunit RPN7 TPR_20 PF14561.6 gi|386002441|ref|YP_005920740.1| - 0.29 11.5 12.7 13 6.2 1.1 5.0 1 1 2 5 5 5 0 Tetratricopeptide repeat ABC2_membrane PF01061.24 gi|386002442|ref|YP_005920741.1| - 9.1e-37 126.5 14.0 1.2e-36 126.1 14.0 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|386002442|ref|YP_005920741.1| - 8.6e-19 67.8 17.9 1.3e-18 67.3 17.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|386002442|ref|YP_005920741.1| - 2.3e-08 33.7 16.9 2.3e-08 33.7 16.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|386002442|ref|YP_005920741.1| - 0.0064 16.5 8.1 0.0064 16.5 8.1 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|386002443|ref|YP_005920742.1| - 3e-29 102.3 0.0 4.4e-29 101.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386002443|ref|YP_005920742.1| - 3.1e-13 50.2 0.0 3.8e-06 26.9 0.0 2.5 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|386002443|ref|YP_005920742.1| - 6.2e-07 30.1 0.0 1.2e-06 29.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|386002443|ref|YP_005920742.1| - 0.00058 20.4 0.0 0.00098 19.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|386002443|ref|YP_005920742.1| - 0.00074 19.2 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|386002443|ref|YP_005920742.1| - 0.0037 17.6 0.0 0.007 16.7 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_15 PF13175.6 gi|386002443|ref|YP_005920742.1| - 0.013 15.3 0.0 0.17 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|386002443|ref|YP_005920742.1| - 0.021 15.0 0.1 0.056 13.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain SRP54 PF00448.22 gi|386002443|ref|YP_005920742.1| - 0.026 14.1 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|386002443|ref|YP_005920742.1| - 0.027 14.9 0.0 0.16 12.4 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|386002443|ref|YP_005920742.1| - 0.042 14.1 0.0 0.077 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|386002443|ref|YP_005920742.1| - 0.045 14.1 0.0 0.094 13.1 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain Roc PF08477.13 gi|386002443|ref|YP_005920742.1| - 0.12 12.6 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 gi|386002443|ref|YP_005920742.1| - 0.12 12.5 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|386002443|ref|YP_005920742.1| - 0.13 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|386002443|ref|YP_005920742.1| - 0.16 11.9 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.6 gi|386002443|ref|YP_005920742.1| - 0.27 9.8 0.0 0.33 9.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain FmdE PF02663.14 gi|386002444|ref|YP_005920743.1| - 2.5e-21 76.1 0.0 7e-15 55.2 0.0 2.2 2 0 0 2 2 2 2 FmdE, Molybdenum formylmethanofuran dehydrogenase operon PTA_PTB PF01515.19 gi|386002445|ref|YP_005920744.1| - 0.22 10.8 0.0 0.34 10.2 0.0 1.3 1 0 0 1 1 1 0 Phosphate acetyl/butaryl transferase AIRS PF00586.24 gi|386002446|ref|YP_005920745.1| - 4.3e-16 59.3 0.4 7.3e-16 58.6 0.4 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|386002446|ref|YP_005920745.1| - 1.1e-15 58.2 0.1 1.8e-15 57.4 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain HEAT_2 PF13646.6 gi|386002447|ref|YP_005920746.1| - 1.8e-58 194.9 17.2 1.4e-22 79.9 1.6 5.0 1 1 3 5 5 5 4 HEAT repeats HEAT PF02985.22 gi|386002447|ref|YP_005920746.1| - 6.3e-36 119.3 6.4 0.00019 21.4 0.0 9.5 9 1 0 9 9 9 8 HEAT repeat HEAT_PBS PF03130.16 gi|386002447|ref|YP_005920746.1| - 1.2e-34 115.4 41.1 5.9e-07 29.6 0.3 9.3 9 0 0 9 9 9 6 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|386002447|ref|YP_005920746.1| - 1.5e-20 73.3 18.3 0.0065 17.0 0.0 8.7 10 0 0 10 10 10 7 HEAT-like repeat Arm PF00514.23 gi|386002447|ref|YP_005920746.1| - 5.3e-16 58.0 1.1 0.012 15.6 0.0 8.2 2 1 6 8 8 8 3 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|386002447|ref|YP_005920746.1| - 5.6e-10 39.5 0.0 0.00028 21.0 0.0 4.0 3 2 1 4 4 4 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|386002447|ref|YP_005920746.1| - 6.5e-05 21.7 0.0 0.0051 15.4 0.0 3.0 1 1 1 2 2 2 1 Adaptin N terminal region DUF4042 PF13251.6 gi|386002447|ref|YP_005920746.1| - 0.07 12.8 0.0 42 3.8 0.0 3.8 2 2 2 4 4 4 0 Domain of unknown function (DUF4042) DUF2019 PF09450.10 gi|386002447|ref|YP_005920746.1| - 0.11 12.5 0.1 11 6.0 0.1 3.5 2 2 3 5 5 5 0 Domain of unknown function (DUF2019) ALF PF03752.13 gi|386002447|ref|YP_005920746.1| - 2.7 8.0 7.2 15 5.7 0.9 3.7 3 0 0 3 3 3 0 Short repeats of unknown function PAS_3 PF08447.12 gi|386002448|ref|YP_005920747.1| - 4.1e-70 232.1 0.4 2.4e-14 53.4 0.0 8.7 8 1 0 8 8 8 7 PAS fold PAS_4 PF08448.10 gi|386002448|ref|YP_005920747.1| - 4.5e-66 220.0 4.0 6.4e-11 42.5 0.0 7.6 7 1 0 7 7 7 7 PAS fold PAS_9 PF13426.7 gi|386002448|ref|YP_005920747.1| - 9.1e-66 218.7 0.0 1.2e-12 48.0 0.0 7.1 7 0 0 7 7 7 6 PAS domain PAS PF00989.25 gi|386002448|ref|YP_005920747.1| - 3.4e-55 184.9 0.8 9.2e-11 41.8 0.0 7.9 8 1 0 8 8 8 6 PAS fold PAS_8 PF13188.7 gi|386002448|ref|YP_005920747.1| - 2.5e-28 97.6 2.6 3e-07 30.3 0.1 6.3 6 0 0 6 6 6 5 PAS domain HATPase_c PF02518.26 gi|386002448|ref|YP_005920747.1| - 4.1e-22 78.8 0.0 5.1e-21 75.3 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|386002448|ref|YP_005920747.1| - 3.2e-13 49.5 0.8 1.9e-12 47.0 0.1 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|386002448|ref|YP_005920747.1| - 7.4e-11 42.2 0.2 0.066 13.4 0.1 5.8 4 2 0 4 4 4 3 PAS fold PAS_11 PF14598.6 gi|386002448|ref|YP_005920747.1| - 2.6e-06 27.5 0.0 0.056 13.6 0.0 4.2 4 0 0 4 4 4 1 PAS domain PAS_12 PF18095.1 gi|386002448|ref|YP_005920747.1| - 0.018 14.7 0.2 13 5.4 0.0 3.3 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain MEKHLA PF08670.11 gi|386002448|ref|YP_005920747.1| - 0.058 13.3 0.1 0.56 10.1 0.0 2.3 2 0 0 2 2 2 0 MEKHLA domain Rx_N PF18052.1 gi|386002448|ref|YP_005920747.1| - 0.11 12.8 1.0 1.2 9.5 0.1 2.8 2 0 0 2 2 2 0 Rx N-terminal domain HATPase_c_5 PF14501.6 gi|386002448|ref|YP_005920747.1| - 0.11 12.4 0.0 0.44 10.5 0.0 1.9 1 1 0 1 1 1 0 GHKL domain PAS_10 PF13596.6 gi|386002448|ref|YP_005920747.1| - 0.15 12.7 0.0 16 6.1 0.0 4.1 5 0 0 5 5 5 0 PAS domain HIP1_clath_bdg PF16515.5 gi|386002448|ref|YP_005920747.1| - 0.96 10.1 3.1 2.4 8.8 1.2 2.6 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 ATP-synt_DE PF00401.20 gi|386002448|ref|YP_005920747.1| - 2.5 8.5 5.0 29 5.0 0.1 3.0 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain MFS_1 PF07690.16 gi|386002449|ref|YP_005920748.1| - 2e-52 178.3 62.5 4.7e-33 114.6 26.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|386002449|ref|YP_005920748.1| - 3.5e-13 49.2 24.6 1.1e-07 31.0 10.3 2.0 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|386002449|ref|YP_005920748.1| - 1.2e-06 27.7 14.5 1.2e-06 27.7 14.5 2.6 2 2 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|386002449|ref|YP_005920748.1| - 2.5e-05 22.9 28.5 0.00084 17.8 28.5 2.1 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_4 PF06779.14 gi|386002449|ref|YP_005920748.1| - 0.033 13.5 31.9 0.32 10.2 31.4 2.7 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB MarR_2 PF12802.7 gi|386002450|ref|YP_005920749.1| - 1.3e-06 28.2 0.3 6.6e-06 25.9 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|386002450|ref|YP_005920749.1| - 2e-05 24.3 0.1 0.0001 22.1 0.0 2.2 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|386002450|ref|YP_005920749.1| - 2.7e-05 24.0 0.1 0.00012 21.9 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|386002450|ref|YP_005920749.1| - 0.0003 20.5 0.1 0.0013 18.5 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain DprA_WH PF17782.1 gi|386002450|ref|YP_005920749.1| - 0.00035 20.6 0.0 0.00079 19.5 0.0 1.6 1 0 0 1 1 1 1 DprA winged helix domain HTH_24 PF13412.6 gi|386002450|ref|YP_005920749.1| - 0.00054 19.5 0.0 0.0018 17.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|386002450|ref|YP_005920749.1| - 0.00084 19.4 0.7 0.0054 16.8 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|386002450|ref|YP_005920749.1| - 0.0016 18.7 0.2 0.013 15.8 0.1 2.2 1 1 2 3 3 3 1 Penicillinase repressor TrmB PF01978.19 gi|386002450|ref|YP_005920749.1| - 0.0018 18.1 0.7 0.0059 16.5 0.1 2.1 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|386002450|ref|YP_005920749.1| - 0.0031 17.4 0.0 0.0065 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|386002450|ref|YP_005920749.1| - 0.013 16.0 0.1 0.048 14.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain Haem_oxygenas_2 PF14518.6 gi|386002450|ref|YP_005920749.1| - 0.018 14.8 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 Iron-containing redox enzyme HTH_11 PF08279.12 gi|386002450|ref|YP_005920749.1| - 0.019 14.9 0.1 0.064 13.2 0.0 1.9 2 0 0 2 2 2 0 HTH domain AAA_30 PF13604.6 gi|386002450|ref|YP_005920749.1| - 0.035 13.8 0.0 0.051 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Glu_dehyd_C PF16912.5 gi|386002450|ref|YP_005920749.1| - 0.047 13.2 0.0 0.06 12.8 0.0 1.2 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus RP-C PF03428.13 gi|386002450|ref|YP_005920749.1| - 0.061 13.0 0.2 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 Replication protein C N-terminal domain Rrf2 PF02082.20 gi|386002450|ref|YP_005920749.1| - 0.072 13.5 0.0 0.22 11.9 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator FUR PF01475.19 gi|386002450|ref|YP_005920749.1| - 0.1 12.7 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family MMPL PF03176.15 gi|386002451|ref|YP_005920750.1| - 7e-52 176.4 25.7 1.6e-29 102.9 6.9 2.4 2 1 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|386002451|ref|YP_005920750.1| - 3.7e-10 39.8 12.0 1.6e-05 24.8 1.5 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|386002451|ref|YP_005920750.1| - 3.9e-10 39.4 6.1 3.9e-10 39.4 6.1 2.6 2 0 0 2 2 2 1 Protein export membrane protein ACR_tran PF00873.19 gi|386002451|ref|YP_005920750.1| - 0.0005 17.9 34.0 0.021 12.5 13.3 2.4 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.18 gi|386002451|ref|YP_005920750.1| - 0.00078 17.7 12.7 0.00078 17.7 12.7 2.6 3 1 0 3 3 3 1 Patched family DUF3487 PF11990.8 gi|386002451|ref|YP_005920750.1| - 0.053 13.4 0.3 0.053 13.4 0.3 4.2 5 1 0 5 5 5 0 Protein of unknown function (DUF3487) Frag1 PF10277.9 gi|386002451|ref|YP_005920750.1| - 0.61 9.6 16.4 0.048 13.2 1.7 3.6 3 0 0 3 3 3 0 Frag1/DRAM/Sfk1 family NPCBM_assoc PF10633.9 gi|386002452|ref|YP_005920751.1| - 9.7e-05 22.6 0.1 1 9.7 0.0 3.1 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase fn3_5 PF06280.12 gi|386002452|ref|YP_005920751.1| - 0.15 12.8 0.0 0.43 11.3 0.0 2.0 1 1 0 1 1 1 0 Fn3-like domain Gram_pos_anchor PF00746.21 gi|386002452|ref|YP_005920751.1| - 6.9 6.7 8.6 0.096 12.6 0.8 1.9 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Peptidase_C25 PF01364.18 gi|386002453|ref|YP_005920752.1| - 1.9e-52 178.7 0.3 2.5e-52 178.3 0.3 1.1 1 0 0 1 1 1 1 Peptidase family C25 Propeptide_C25 PF08126.11 gi|386002453|ref|YP_005920752.1| - 0.0063 15.6 0.0 0.014 14.5 0.0 1.5 1 1 0 1 1 1 1 Propeptide_C25 Rep_2 PF01719.17 gi|386002453|ref|YP_005920752.1| - 0.58 9.9 2.3 10 5.9 0.7 2.3 2 0 0 2 2 2 0 Plasmid replication protein Lactamase_B PF00753.27 gi|386002454|ref|YP_005920753.1| - 1e-13 51.7 1.1 1.8e-13 50.9 0.8 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|386002454|ref|YP_005920753.1| - 0.00012 21.6 0.1 0.00028 20.5 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|386002454|ref|YP_005920753.1| - 0.023 14.6 0.0 0.064 13.2 0.0 1.7 2 0 0 2 2 2 0 Beta-lactamase superfamily domain DUF378 PF04070.12 gi|386002455|ref|YP_005920754.1| - 2e-16 59.6 8.7 2.4e-16 59.3 8.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF378) DUF1624 PF07786.12 gi|386002456|ref|YP_005920755.1| - 4.4e-66 222.6 2.8 5e-66 222.4 2.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.22 gi|386002456|ref|YP_005920755.1| - 1.9e-05 23.9 18.9 0.00058 19.0 8.1 2.7 1 1 1 2 2 2 2 Acyltransferase family Lipoprotein_15 PF03640.15 gi|386002457|ref|YP_005920756.1| - 2.7e-22 78.0 2.9 1.2e-11 44.0 0.2 2.1 2 0 0 2 2 2 2 Secreted repeat of unknown function Lipoprotein_15 PF03640.15 gi|386002458|ref|YP_005920757.1| - 4.1e-30 103.1 2.1 7.3e-16 57.4 0.6 2.2 2 0 0 2 2 2 2 Secreted repeat of unknown function TrmO PF01980.16 gi|386002459|ref|YP_005920758.1| - 7.5e-33 113.3 0.0 8.9e-33 113.0 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O DUF2116 PF09889.9 gi|386002461|ref|YP_005920760.1| - 1.6e-18 66.5 0.7 1.8e-18 66.2 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) zinc_ribbon_2 PF13240.6 gi|386002461|ref|YP_005920760.1| - 0.012 15.3 0.6 0.017 14.8 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DUF4293 PF14126.6 gi|386002461|ref|YP_005920760.1| - 0.02 15.2 1.3 0.022 15.0 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) DZR PF12773.7 gi|386002461|ref|YP_005920760.1| - 0.035 14.1 1.1 0.043 13.8 1.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon DHHC PF01529.20 gi|386002461|ref|YP_005920760.1| - 1.4 9.0 6.4 3.8 7.6 6.4 1.6 1 1 0 1 1 1 0 DHHC palmitoyltransferase NosD PF05048.13 gi|386002462|ref|YP_005920761.1| - 3e-56 190.4 37.8 3.2e-29 101.9 9.6 3.1 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386002462|ref|YP_005920761.1| - 4.4e-42 143.6 47.7 3e-19 69.4 13.3 3.3 2 1 1 3 3 3 3 Right handed beta helix region DUF1565 PF07602.11 gi|386002462|ref|YP_005920761.1| - 1e-05 25.0 23.8 0.016 14.5 0.1 4.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Pectinesterase PF01095.19 gi|386002462|ref|YP_005920761.1| - 0.00053 18.8 0.1 0.001 17.9 0.1 1.5 1 0 0 1 1 1 1 Pectinesterase Pectate_lyase_3 PF12708.7 gi|386002462|ref|YP_005920761.1| - 0.0012 18.8 7.1 0.0012 18.8 7.1 3.1 1 1 1 3 3 3 2 Pectate lyase superfamily protein PurK_C PF17769.1 gi|386002462|ref|YP_005920761.1| - 0.056 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Phosphoribosylaminoimidazole carboxylase C-terminal domain ArsA_HSP20 PF17886.1 gi|386002462|ref|YP_005920761.1| - 0.18 11.4 0.0 0.39 10.3 0.0 1.5 1 0 0 1 1 1 0 HSP20-like domain found in ArsA Pepsin-I3 PF06394.13 gi|386002462|ref|YP_005920761.1| - 1.4 9.2 3.7 38 4.6 0.1 3.0 2 1 1 3 3 3 0 Pepsin inhibitor-3-like repeated domain Sec61_beta PF03911.16 gi|386002463|ref|YP_005920762.1| - 3.6e-12 46.1 0.0 3.9e-12 46.0 0.0 1.0 1 0 0 1 1 1 1 Sec61beta family ParA PF10609.9 gi|386002464|ref|YP_005920763.1| - 2.6e-97 325.1 0.0 3.1e-97 324.9 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|386002464|ref|YP_005920763.1| - 1.3e-16 60.8 0.0 6.2e-16 58.6 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|386002464|ref|YP_005920763.1| - 2e-09 37.6 0.4 1.9e-08 34.4 0.4 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|386002464|ref|YP_005920763.1| - 5.9e-09 35.6 0.0 1.2e-08 34.6 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|386002464|ref|YP_005920763.1| - 6.4e-06 26.1 0.1 0.011 15.6 0.1 2.3 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|386002464|ref|YP_005920763.1| - 4.9e-05 22.7 1.0 0.0016 17.7 0.3 2.5 2 1 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 gi|386002464|ref|YP_005920763.1| - 0.00012 21.2 0.4 0.00018 20.6 0.4 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|386002464|ref|YP_005920763.1| - 0.00064 19.2 0.0 0.0018 17.8 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 gi|386002464|ref|YP_005920763.1| - 0.0015 18.4 0.1 0.0023 17.9 0.1 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase VirC1 PF07015.11 gi|386002464|ref|YP_005920763.1| - 0.0073 15.6 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein Desulfoferrod_N PF06397.12 gi|386002464|ref|YP_005920763.1| - 0.023 14.3 0.2 0.023 14.3 0.2 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain AAA_25 PF13481.6 gi|386002464|ref|YP_005920763.1| - 0.027 14.0 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain CBP_BcsQ PF06564.12 gi|386002464|ref|YP_005920763.1| - 0.041 13.4 0.3 0.28 10.6 0.2 1.9 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ NTPase_1 PF03266.15 gi|386002464|ref|YP_005920763.1| - 0.042 13.8 0.1 0.086 12.8 0.1 1.5 1 0 0 1 1 1 0 NTPase CLP1_P PF16575.5 gi|386002464|ref|YP_005920763.1| - 0.065 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|386002464|ref|YP_005920763.1| - 0.068 12.9 0.4 0.11 12.2 0.4 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|386002464|ref|YP_005920763.1| - 0.074 12.9 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B LpxK PF02606.14 gi|386002464|ref|YP_005920763.1| - 0.085 11.9 0.1 0.15 11.1 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase TrwB_AAD_bind PF10412.9 gi|386002464|ref|YP_005920763.1| - 0.092 11.6 0.1 0.12 11.3 0.1 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SRP54 PF00448.22 gi|386002464|ref|YP_005920763.1| - 0.12 12.0 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF1611 PF07755.11 gi|386002464|ref|YP_005920763.1| - 0.13 11.6 0.2 0.2 10.9 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain NB-ARC PF00931.22 gi|386002464|ref|YP_005920763.1| - 0.19 10.9 0.1 0.29 10.3 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|386002464|ref|YP_005920763.1| - 0.21 11.9 0.0 0.45 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|386002464|ref|YP_005920763.1| - 0.26 10.7 0.0 0.38 10.2 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Radical_SAM PF04055.21 gi|386002465|ref|YP_005920764.1| - 9e-13 48.9 0.0 1.9e-12 47.9 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily TrmB PF01978.19 gi|386002465|ref|YP_005920764.1| - 0.0019 18.0 0.3 0.082 12.8 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fer4_14 PF13394.6 gi|386002465|ref|YP_005920764.1| - 0.0023 18.0 0.0 0.11 12.6 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Sulfolobus_pRN PF05584.11 gi|386002465|ref|YP_005920764.1| - 0.012 15.7 0.6 0.034 14.2 0.6 1.8 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_20 PF12840.7 gi|386002465|ref|YP_005920764.1| - 0.017 15.2 4.7 0.26 11.4 0.8 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain HRDC PF00570.23 gi|386002465|ref|YP_005920764.1| - 0.034 14.1 0.0 0.21 11.6 0.0 2.3 2 0 0 2 2 2 0 HRDC domain Fer4_12 PF13353.6 gi|386002465|ref|YP_005920764.1| - 0.13 12.5 0.1 0.65 10.3 0.1 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain TauE PF01925.19 gi|386002466|ref|YP_005920765.1| - 4.3e-22 78.9 32.9 5.1e-22 78.7 32.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE tRNA-synt_1 PF00133.22 gi|386002467|ref|YP_005920766.1| - 1e-190 635.0 0.0 1.3e-190 634.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|386002467|ref|YP_005920766.1| - 4.3e-34 117.7 0.0 7.4e-34 116.9 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|386002467|ref|YP_005920766.1| - 1.5e-24 86.5 1.1 5.6e-11 41.8 0.2 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|386002467|ref|YP_005920766.1| - 4.9e-06 26.1 0.0 0.00016 21.1 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|386002467|ref|YP_005920766.1| - 0.0015 17.5 0.1 0.0055 15.7 0.0 1.9 3 0 0 3 3 3 1 tRNA synthetases class I (K) DNase-RNase PF02577.14 gi|386002468|ref|YP_005920767.1| - 5.3e-36 123.1 0.1 5.8e-36 123.0 0.1 1.0 1 0 0 1 1 1 1 Bifunctional nuclease Peptidase_C25 PF01364.18 gi|386002469|ref|YP_005920768.1| - 9.9e-62 209.3 0.0 1.3e-61 208.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family C25 CARDB PF07705.11 gi|386002469|ref|YP_005920768.1| - 1.7e-06 28.2 0.0 3.7e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 CARDB Propeptide_C25 PF08126.11 gi|386002469|ref|YP_005920768.1| - 0.00092 18.4 0.0 0.0015 17.6 0.0 1.3 1 0 0 1 1 1 1 Propeptide_C25 Beta_helix PF13229.6 gi|386002470|ref|YP_005920769.1| - 7.9e-15 55.0 2.7 1.2e-14 54.5 2.7 1.3 1 0 0 1 1 1 1 Right handed beta helix region NosD PF05048.13 gi|386002470|ref|YP_005920769.1| - 4.2e-14 52.4 4.6 5.2e-14 52.1 4.6 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) DUF1565 PF07602.11 gi|386002470|ref|YP_005920769.1| - 6e-09 35.6 9.1 7.9e-08 31.9 9.1 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) Lactamase_B_2 PF12706.7 gi|386002471|ref|YP_005920770.1| - 1.8e-27 96.1 0.0 1.6e-13 50.7 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|386002471|ref|YP_005920770.1| - 3.6e-15 56.5 0.1 9.8e-13 48.5 0.0 2.4 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|386002471|ref|YP_005920770.1| - 8.3e-07 28.6 0.0 1.6e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease Lactamase_B_3 PF13483.6 gi|386002471|ref|YP_005920770.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Ubiq_cyt_C_chap PF03981.12 gi|386002472|ref|YP_005920771.1| - 0.0076 16.3 1.2 0.04 14.0 0.3 2.1 1 1 1 2 2 2 2 Ubiquinol-cytochrome C chaperone SurE PF01975.17 gi|386002473|ref|YP_005920772.1| - 1.1e-49 168.9 0.2 1.3e-49 168.7 0.2 1.1 1 0 0 1 1 1 1 Survival protein SurE DUF2202 PF09968.9 gi|386002475|ref|YP_005920774.1| - 8.9e-55 185.0 1.0 1.2e-54 184.6 1.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DOMON PF03351.17 gi|386002475|ref|YP_005920774.1| - 1.9e-28 99.1 0.0 2.8e-28 98.6 0.0 1.3 1 0 0 1 1 1 1 DOMON domain EB_dh PF09459.10 gi|386002475|ref|YP_005920774.1| - 0.0085 16.1 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase Rubrerythrin PF02915.17 gi|386002475|ref|YP_005920774.1| - 0.033 14.6 0.8 0.067 13.6 0.8 1.5 1 1 0 1 1 1 0 Rubrerythrin 2TM PF13239.6 gi|386002476|ref|YP_005920775.1| - 5.1e-10 39.5 1.1 5.8e-10 39.3 1.1 1.1 1 0 0 1 1 1 1 2TM domain CrgA PF06781.12 gi|386002476|ref|YP_005920775.1| - 0.0041 17.1 3.9 0.005 16.9 3.9 1.1 1 0 0 1 1 1 1 Cell division protein CrgA AhpC-TSA PF00578.21 gi|386002477|ref|YP_005920776.1| - 1.8e-30 105.4 0.0 2.5e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|386002477|ref|YP_005920776.1| - 2.6e-11 43.2 0.1 5.2e-11 42.2 0.1 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|386002477|ref|YP_005920776.1| - 6.2e-11 42.2 0.0 1.2e-10 41.3 0.0 1.4 2 0 0 2 2 2 1 Redoxin DUF4079 PF13301.6 gi|386002478|ref|YP_005920777.1| - 1.1e-06 28.9 21.5 4.9e-05 23.5 7.4 2.5 1 1 2 3 3 3 2 Protein of unknown function (DUF4079) Cytochrom_B561 PF03188.16 gi|386002478|ref|YP_005920777.1| - 7.4e-06 26.1 6.6 6.1e-05 23.2 7.1 1.9 1 1 1 2 2 2 1 Eukaryotic cytochrome b561 DUF2306 PF10067.9 gi|386002478|ref|YP_005920777.1| - 0.0034 17.6 9.7 0.13 12.4 2.5 2.1 1 1 1 2 2 2 2 Predicted membrane protein (DUF2306) DUF420 PF04238.12 gi|386002478|ref|YP_005920777.1| - 0.036 14.4 4.0 0.07 13.4 4.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF420) DUF2157 PF09925.9 gi|386002478|ref|YP_005920777.1| - 1.8 8.3 10.3 24 4.7 10.3 2.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) TspO_MBR PF03073.15 gi|386002479|ref|YP_005920778.1| - 5.7e-48 162.4 14.4 6.4e-48 162.2 14.4 1.0 1 0 0 1 1 1 1 TspO/MBR family Glyoxalase_4 PF13669.6 gi|386002480|ref|YP_005920779.1| - 3.7e-05 23.9 0.0 0.00099 19.4 0.0 2.2 2 0 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|386002480|ref|YP_005920779.1| - 0.018 15.1 0.0 4.2 7.4 0.0 2.3 2 0 0 2 2 2 0 Glyoxalase-like domain DUF829 PF05705.14 gi|386002480|ref|YP_005920779.1| - 0.2 11.6 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) MFS_1 PF07690.16 gi|386002481|ref|YP_005920780.1| - 1.3e-38 132.8 45.2 1.9e-19 69.8 13.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|386002481|ref|YP_005920780.1| - 7.7e-10 38.2 17.8 1e-06 27.9 0.2 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|386002481|ref|YP_005920780.1| - 7.1e-05 21.8 14.7 0.00067 18.6 8.7 2.5 2 1 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|386002481|ref|YP_005920780.1| - 1.1 7.6 25.6 0.1 11.0 10.0 4.2 3 2 1 4 4 4 0 Transmembrane secretion effector DUF87 PF01935.17 gi|386002482|ref|YP_005920781.1| - 4.6e-38 131.6 0.0 6.7e-38 131.0 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|386002482|ref|YP_005920781.1| - 2.4e-05 23.2 0.0 0.05 12.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|386002482|ref|YP_005920781.1| - 7e-05 21.9 0.0 0.0067 15.4 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|386002482|ref|YP_005920781.1| - 0.002 17.1 0.0 0.0048 15.9 0.0 1.6 2 1 0 2 2 2 1 AAA-like domain T4SS-DNA_transf PF02534.14 gi|386002482|ref|YP_005920781.1| - 0.0096 14.8 0.0 0.014 14.2 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer ResIII PF04851.15 gi|386002482|ref|YP_005920781.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit HAS-barrel PF09378.10 gi|386002482|ref|YP_005920781.1| - 0.056 13.6 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 HAS barrel domain DEAD PF00270.29 gi|386002482|ref|YP_005920781.1| - 0.12 12.1 0.0 1 9.1 0.0 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|386002482|ref|YP_005920781.1| - 0.13 12.6 0.0 6.3 7.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain Rhomboid PF01694.22 gi|386002483|ref|YP_005920782.1| - 2.9e-37 128.0 17.4 2.9e-37 128.0 17.4 1.5 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|386002483|ref|YP_005920782.1| - 3.2e-07 30.8 0.6 3.2e-07 30.8 0.6 2.5 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) TatD_DNase PF01026.21 gi|386002484|ref|YP_005920783.1| - 2.3e-68 230.3 0.0 2.6e-68 230.1 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 gi|386002484|ref|YP_005920783.1| - 1.3e-05 25.1 1.7 9.6e-05 22.3 1.7 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.20 gi|386002484|ref|YP_005920783.1| - 6e-05 22.5 0.0 0.00057 19.3 0.0 2.4 1 1 0 1 1 1 1 Amidohydrolase family HMGL-like PF00682.19 gi|386002485|ref|YP_005920784.1| - 3.5e-83 279.2 2.9 5.7e-83 278.5 2.9 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|386002485|ref|YP_005920784.1| - 1.7e-30 105.6 3.9 3.2e-30 104.7 3.9 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.24 gi|386002485|ref|YP_005920784.1| - 0.0099 15.3 0.0 0.03 13.7 0.0 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel FKBP_C PF00254.28 gi|386002486|ref|YP_005920785.1| - 1.6e-08 34.8 0.1 6e-08 32.9 0.1 1.9 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|386002486|ref|YP_005920785.1| - 0.0055 16.8 0.0 0.01 15.9 0.0 1.5 1 0 0 1 1 1 1 FKBP26_C-terminal PyrI PF01948.18 gi|386002487|ref|YP_005920786.1| - 9.4e-35 118.8 0.6 1.2e-34 118.4 0.6 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|386002487|ref|YP_005920786.1| - 6.7e-17 61.1 1.4 1.1e-16 60.4 1.4 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Dynamin_N PF00350.23 gi|386002487|ref|YP_005920786.1| - 0.036 14.1 0.3 0.07 13.2 0.3 1.5 1 1 0 1 1 1 0 Dynamin family DNA_ligase_ZBD PF03119.16 gi|386002487|ref|YP_005920786.1| - 0.059 13.4 0.4 3.1 7.9 0.5 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain OTCace_N PF02729.21 gi|386002488|ref|YP_005920787.1| - 7.7e-49 165.5 0.0 2.7e-48 163.8 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|386002488|ref|YP_005920787.1| - 5e-30 104.7 0.0 6.5e-30 104.3 0.0 1.1 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Cas_Cas4 PF01930.17 gi|386002489|ref|YP_005920788.1| - 9.4e-10 38.8 0.0 1.9e-07 31.3 0.0 2.5 2 1 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|386002489|ref|YP_005920788.1| - 1.7e-09 38.0 0.1 5.3e-09 36.4 0.1 1.8 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 gi|386002489|ref|YP_005920788.1| - 1.2e-05 24.8 0.2 2.8e-05 23.6 0.2 1.6 1 1 0 1 1 1 1 CRISPR-associated exonuclease Csa1 DPRP PF04244.13 gi|386002490|ref|YP_005920789.1| - 1.8e-53 181.7 0.0 2.9e-53 181.0 0.0 1.3 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.14 gi|386002490|ref|YP_005920789.1| - 0.00021 20.8 0.0 0.00037 20.0 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DUF3160 PF11369.8 gi|386002491|ref|YP_005920790.1| - 9.7e-234 777.5 0.0 1.1e-233 777.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) S-layer PF07752.11 gi|386002492|ref|YP_005920791.1| - 1.3e-139 463.6 7.7 2.1e-70 236.7 2.8 2.0 2 0 0 2 2 2 2 S-layer protein Peptidase_M48 PF01435.18 gi|386002493|ref|YP_005920792.1| - 4.5e-40 137.5 0.0 4.5e-40 137.5 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|386002493|ref|YP_005920792.1| - 2.6e-07 30.1 1.0 4.7e-07 29.3 0.1 1.9 2 1 0 2 2 2 1 BlaR1 peptidase M56 DUF4157 PF13699.6 gi|386002493|ref|YP_005920792.1| - 0.044 14.0 0.0 0.085 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) PspA_IM30 PF04012.12 gi|386002496|ref|YP_005920795.1| - 7.8e-26 91.0 30.9 8.7e-26 90.9 30.9 1.0 1 0 0 1 1 1 1 PspA/IM30 family DUF1664 PF07889.12 gi|386002496|ref|YP_005920795.1| - 0.00045 20.2 12.6 0.0019 18.3 3.5 2.7 1 1 2 3 3 3 1 Protein of unknown function (DUF1664) Flagellin_C PF00700.21 gi|386002496|ref|YP_005920795.1| - 0.0006 20.1 8.7 0.42 11.0 0.1 3.8 3 1 1 4 4 4 2 Bacterial flagellin C-terminal helical region NOG1 PF06858.14 gi|386002496|ref|YP_005920795.1| - 0.0066 16.2 0.1 0.032 14.0 0.0 2.1 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) DivIC PF04977.15 gi|386002496|ref|YP_005920795.1| - 0.036 13.8 3.3 0.036 13.8 3.3 3.8 3 1 0 3 3 3 0 Septum formation initiator DUF3584 PF12128.8 gi|386002496|ref|YP_005920795.1| - 0.15 9.5 22.6 0.034 11.7 16.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) COG5 PF10392.9 gi|386002496|ref|YP_005920795.1| - 0.16 12.1 7.4 0.27 11.4 6.0 2.1 1 1 1 2 2 2 0 Golgi transport complex subunit 5 DUF5082 PF16888.5 gi|386002496|ref|YP_005920795.1| - 0.21 11.8 12.2 0.13 12.5 4.4 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) GCN5L1 PF06320.13 gi|386002496|ref|YP_005920795.1| - 0.24 11.5 15.5 0.63 10.2 1.1 2.8 2 1 1 3 3 3 0 GCN5-like protein 1 (GCN5L1) DUF3450 PF11932.8 gi|386002496|ref|YP_005920795.1| - 0.26 10.6 21.1 0.16 11.2 7.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Snf7 PF03357.21 gi|386002496|ref|YP_005920795.1| - 0.55 9.8 16.9 0.29 10.7 10.8 2.3 1 1 1 2 2 2 0 Snf7 DAP_B PF07930.12 gi|386002496|ref|YP_005920795.1| - 0.68 9.9 7.7 1.7 8.6 1.3 2.3 1 1 1 2 2 2 0 D-aminopeptidase, domain B DUF3958 PF13125.6 gi|386002496|ref|YP_005920795.1| - 0.79 10.0 12.8 13 6.0 11.4 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3958) DUF1515 PF07439.11 gi|386002496|ref|YP_005920795.1| - 0.82 9.7 19.3 0.13 12.3 1.0 4.1 1 1 2 4 4 4 0 Protein of unknown function (DUF1515) Prominin PF05478.11 gi|386002496|ref|YP_005920795.1| - 1.1 7.2 4.5 1.3 6.9 4.5 1.3 1 0 0 1 1 1 0 Prominin Spc7 PF08317.11 gi|386002496|ref|YP_005920795.1| - 1.3 7.8 23.6 0.47 9.3 11.5 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein Fzo_mitofusin PF04799.13 gi|386002496|ref|YP_005920795.1| - 1.4 8.4 12.4 1.4 8.4 1.0 3.0 1 1 2 3 3 3 0 fzo-like conserved region TMF_DNA_bd PF12329.8 gi|386002496|ref|YP_005920795.1| - 1.6 8.8 16.5 0.19 11.7 6.6 3.3 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF1993 PF09351.10 gi|386002496|ref|YP_005920795.1| - 1.7 8.8 11.4 1.7 8.7 9.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1993) FapA PF03961.13 gi|386002496|ref|YP_005920795.1| - 1.8 7.1 11.1 0.54 8.8 5.8 1.9 1 1 1 2 2 2 0 Flagellar Assembly Protein A Spc24 PF08286.11 gi|386002496|ref|YP_005920795.1| - 1.8 8.8 14.3 1.3 9.3 5.5 2.8 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 APG6_N PF17675.1 gi|386002496|ref|YP_005920795.1| - 2.6 8.6 30.8 0.7 10.4 22.0 3.3 1 1 1 2 2 2 0 Apg6 coiled-coil region SLIDE PF09111.10 gi|386002496|ref|YP_005920795.1| - 3.1 7.8 6.9 7.4 6.6 0.9 3.2 3 1 1 4 4 4 0 SLIDE YabA PF06156.13 gi|386002496|ref|YP_005920795.1| - 3.6 8.3 12.5 1.4e+03 -0.1 0.0 2.8 1 1 1 2 2 2 0 Initiation control protein YabA DUF724 PF05266.14 gi|386002496|ref|YP_005920795.1| - 4.7 7.0 17.7 3.2 7.5 8.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF724) CLZ PF16526.5 gi|386002496|ref|YP_005920795.1| - 4.8 7.6 20.6 0.11 12.8 2.8 4.3 2 2 2 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels YlqD PF11068.8 gi|386002496|ref|YP_005920795.1| - 5.1 7.5 16.6 8 6.8 7.0 2.4 1 1 1 2 2 2 0 YlqD protein DUF3708 PF12501.8 gi|386002496|ref|YP_005920795.1| - 5.3 6.8 6.5 4 7.2 5.0 1.7 1 1 1 2 2 2 0 Phosphate ATP-binding cassette transporter Ax_dynein_light PF10211.9 gi|386002496|ref|YP_005920795.1| - 6.2 6.7 18.0 7.8 6.4 6.2 2.9 1 1 2 3 3 3 0 Axonemal dynein light chain Exonuc_VII_L PF02601.15 gi|386002496|ref|YP_005920795.1| - 6.5 6.2 16.0 16 5.0 15.9 1.7 1 1 0 1 1 1 0 Exonuclease VII, large subunit COG2 PF06148.11 gi|386002496|ref|YP_005920795.1| - 9.8 6.3 16.3 2.2 8.4 0.2 3.6 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Helicase_C_2 PF13307.6 gi|386002498|ref|YP_005920797.1| - 2.2e-32 112.6 0.0 3.9e-32 111.8 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|386002498|ref|YP_005920797.1| - 8.7e-12 45.0 0.0 1.5e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|386002498|ref|YP_005920797.1| - 6.8e-06 26.2 0.0 0.0035 17.4 0.0 2.6 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|386002498|ref|YP_005920797.1| - 1.1e-05 25.9 0.1 0.011 16.1 0.0 3.3 3 2 0 4 4 4 2 AAA ATPase domain HBB PF06777.11 gi|386002498|ref|YP_005920797.1| - 7.5e-05 22.5 0.0 0.0002 21.1 0.0 1.8 1 0 0 1 1 1 1 Helical and beta-bridge domain AAA_22 PF13401.6 gi|386002498|ref|YP_005920797.1| - 0.0069 16.7 0.3 0.49 10.7 0.0 3.2 3 0 0 3 3 3 1 AAA domain DEAD PF00270.29 gi|386002498|ref|YP_005920797.1| - 0.028 14.2 0.1 0.18 11.5 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase Herpes_U15 PF05613.11 gi|386002498|ref|YP_005920797.1| - 0.13 13.0 0.0 0.28 11.9 0.0 1.5 1 0 0 1 1 1 0 Human herpesvirus U15 protein DUF555 PF04475.12 gi|386002499|ref|YP_005920798.1| - 1.8e-45 153.4 0.0 2.2e-45 153.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zf-ribbon_3 PF13248.6 gi|386002499|ref|YP_005920798.1| - 0.055 12.9 0.0 0.097 12.1 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Dodecin PF07311.12 gi|386002499|ref|YP_005920798.1| - 0.06 13.6 0.1 0.12 12.6 0.1 1.5 1 0 0 1 1 1 0 Dodecin Tex_N PF09371.10 gi|386002501|ref|YP_005920800.1| - 3.6e-64 215.8 0.1 3.4e-63 212.6 0.1 2.1 2 0 0 2 2 2 1 Tex-like protein N-terminal domain Tex_YqgF PF16921.5 gi|386002501|ref|YP_005920800.1| - 2.4e-44 150.8 0.0 4.8e-44 149.8 0.0 1.5 1 0 0 1 1 1 1 Tex protein YqgF-like domain HHH_3 PF12836.7 gi|386002501|ref|YP_005920800.1| - 1.9e-29 101.7 0.0 3.8e-29 100.7 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif S1 PF00575.23 gi|386002501|ref|YP_005920800.1| - 1.2e-20 73.6 0.4 2.4e-20 72.7 0.4 1.5 1 0 0 1 1 1 1 S1 RNA binding domain HHH_9 PF17674.1 gi|386002501|ref|YP_005920800.1| - 2.8e-20 73.0 0.1 8.9e-20 71.4 0.1 1.9 1 0 0 1 1 1 1 HHH domain HHH PF00633.23 gi|386002501|ref|YP_005920800.1| - 4.1e-09 35.9 0.2 0.0022 17.8 0.0 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix motif YqgF PF14639.6 gi|386002501|ref|YP_005920800.1| - 5e-07 29.6 0.0 9.5e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 Holliday-junction resolvase-like of SPT6 HHH_7 PF14635.6 gi|386002501|ref|YP_005920800.1| - 6e-05 23.3 0.0 0.00012 22.4 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.11 gi|386002501|ref|YP_005920800.1| - 0.00031 20.7 0.0 0.00091 19.2 0.0 1.7 1 0 0 1 1 1 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.6 gi|386002501|ref|YP_005920800.1| - 0.00072 20.1 0.0 0.18 12.5 0.0 3.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_6 PF14579.6 gi|386002501|ref|YP_005920800.1| - 0.019 15.2 0.0 0.081 13.2 0.0 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|386002501|ref|YP_005920800.1| - 0.046 13.8 0.0 0.32 11.1 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif CARD PF00619.21 gi|386002501|ref|YP_005920800.1| - 0.054 13.5 0.4 0.16 12.0 0.4 1.7 1 0 0 1 1 1 0 Caspase recruitment domain T2SSK PF03934.13 gi|386002501|ref|YP_005920800.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K HD PF01966.22 gi|386002502|ref|YP_005920801.1| - 2e-12 47.4 0.7 3.6e-12 46.6 0.7 1.4 1 0 0 1 1 1 1 HD domain ProSAAS PF07259.12 gi|386002502|ref|YP_005920801.1| - 0.0037 17.3 0.1 0.006 16.6 0.1 1.3 1 0 0 1 1 1 1 ProSAAS precursor Peptidase_M24 PF00557.24 gi|386002503|ref|YP_005920802.1| - 1.2e-35 123.1 0.0 1.7e-35 122.6 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|386002503|ref|YP_005920802.1| - 1.7e-14 54.6 0.0 3.6e-14 53.5 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain dCache_1 PF02743.18 gi|386002504|ref|YP_005920803.1| - 5.2e-06 26.4 0.0 7.4e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Cache domain CHASE PF03924.13 gi|386002504|ref|YP_005920803.1| - 0.022 14.7 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 CHASE domain sCache_2 PF17200.4 gi|386002505|ref|YP_005920804.1| - 2.9e-37 127.9 0.0 1.3e-21 77.0 0.0 2.1 2 0 0 2 2 2 2 Single Cache domain 2 dCache_2 PF08269.11 gi|386002505|ref|YP_005920804.1| - 4.1e-27 95.1 0.0 9.8e-14 51.2 0.0 2.1 1 1 1 2 2 2 2 Cache domain COPI_assoc PF08507.10 gi|386002505|ref|YP_005920804.1| - 0.099 12.7 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 COPI associated protein DUF2202 PF09968.9 gi|386002507|ref|YP_005920806.1| - 1.7e-41 141.8 0.0 2.3e-41 141.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DOMON PF03351.17 gi|386002507|ref|YP_005920806.1| - 2e-18 66.8 0.0 2.7e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 DOMON domain Rubrerythrin PF02915.17 gi|386002507|ref|YP_005920806.1| - 0.028 14.8 0.1 0.079 13.4 0.0 1.8 2 0 0 2 2 2 0 Rubrerythrin RELT PF12606.8 gi|386002508|ref|YP_005920807.1| - 0.029 13.4 0.0 0.048 12.7 0.0 1.3 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 Methyltransf_25 PF13649.6 gi|386002509|ref|YP_005920808.1| - 1.2e-16 61.2 0.0 2.2e-16 60.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002509|ref|YP_005920808.1| - 1.4e-16 61.0 0.0 2.1e-16 60.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386002509|ref|YP_005920808.1| - 1.5e-15 57.6 0.0 2.6e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386002509|ref|YP_005920808.1| - 6.8e-13 48.8 0.0 9.7e-13 48.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386002509|ref|YP_005920808.1| - 6.8e-12 45.4 0.0 8.5e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|386002509|ref|YP_005920808.1| - 6.9e-07 29.0 0.0 1.2e-06 28.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|386002509|ref|YP_005920808.1| - 9e-07 28.5 0.0 1.5e-06 27.7 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|386002509|ref|YP_005920808.1| - 1.3e-05 24.6 0.0 1.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NNMT_PNMT_TEMT PF01234.17 gi|386002509|ref|YP_005920808.1| - 0.00022 20.5 0.0 0.00038 19.7 0.0 1.3 1 0 0 1 1 1 1 NNMT/PNMT/TEMT family TehB PF03848.14 gi|386002509|ref|YP_005920808.1| - 0.00043 19.7 0.0 0.00063 19.2 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_2 PF00891.18 gi|386002509|ref|YP_005920808.1| - 0.0025 17.2 0.0 0.0047 16.2 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase domain Methyltransf_PK PF05891.12 gi|386002509|ref|YP_005920808.1| - 0.021 14.3 0.0 0.03 13.8 0.0 1.1 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase PCMT PF01135.19 gi|386002509|ref|YP_005920808.1| - 0.078 12.7 0.1 0.18 11.5 0.0 1.7 2 1 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|386002509|ref|YP_005920808.1| - 0.12 11.7 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) LIAS_N PF16881.5 gi|386002509|ref|YP_005920808.1| - 0.15 12.5 0.0 0.27 11.7 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of lipoyl synthase of Radical_SAM family NTP_transf_2 PF01909.23 gi|386002510|ref|YP_005920809.1| - 7e-13 48.7 0.5 8.2e-13 48.5 0.5 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|386002510|ref|YP_005920809.1| - 1.6e-12 47.4 0.1 2e-12 47.0 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MdcG PF10620.9 gi|386002510|ref|YP_005920809.1| - 0.14 11.9 0.1 0.18 11.5 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DUF86 PF01934.17 gi|386002511|ref|YP_005920810.1| - 1.5e-26 92.6 0.0 1.8e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 AAA_3 PF07726.11 gi|386002512|ref|YP_005920811.1| - 1e-06 28.6 0.0 3.6e-06 26.9 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|386002512|ref|YP_005920811.1| - 0.0025 17.8 0.0 0.0045 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DnaB_bind PF10410.9 gi|386002512|ref|YP_005920811.1| - 0.34 11.1 1.5 1.4 9.2 0.1 2.7 3 1 1 4 4 4 0 DnaB-helicase binding domain of primase GXGXG PF01493.19 gi|386002513|ref|YP_005920812.1| - 1.2e-06 28.3 25.2 0.0012 18.5 2.7 2.8 1 1 1 2 2 2 2 GXGXG motif VWA_2 PF13519.6 gi|386002514|ref|YP_005920813.1| - 0.00054 20.6 0.0 0.00093 19.8 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|386002514|ref|YP_005920813.1| - 0.093 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein FMN_red PF03358.15 gi|386002515|ref|YP_005920814.1| - 7.1e-17 61.6 0.1 1.3e-16 60.7 0.1 1.4 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|386002515|ref|YP_005920814.1| - 3.4e-09 36.7 0.0 4.3e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|386002515|ref|YP_005920814.1| - 1e-05 25.8 0.0 0.088 13.0 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|386002515|ref|YP_005920814.1| - 1.2e-05 25.6 0.1 0.001 19.3 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin YCII PF03795.14 gi|386002515|ref|YP_005920814.1| - 0.032 14.6 0.3 0.072 13.5 0.3 1.6 1 1 0 1 1 1 0 YCII-related domain Rubrerythrin PF02915.17 gi|386002516|ref|YP_005920815.1| - 1.6e-31 109.5 5.9 2.1e-31 109.1 5.9 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|386002516|ref|YP_005920815.1| - 1.1e-10 41.6 0.4 1.4e-10 41.2 0.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain HypA PF01155.19 gi|386002516|ref|YP_005920815.1| - 0.0097 15.9 0.4 0.017 15.2 0.1 1.6 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HalOD2 PF18547.1 gi|386002516|ref|YP_005920815.1| - 0.019 14.8 0.3 0.019 14.8 0.3 2.5 2 1 1 3 3 3 0 Halobacterial output domain 2 Zn-ribbon_8 PF09723.10 gi|386002516|ref|YP_005920815.1| - 0.11 12.6 3.0 0.26 11.4 3.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.18 gi|386002516|ref|YP_005920815.1| - 0.12 12.3 1.3 0.82 9.6 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF892 PF05974.12 gi|386002516|ref|YP_005920815.1| - 0.16 12.0 2.4 1 9.4 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF892) Rubredoxin_2 PF18073.1 gi|386002516|ref|YP_005920815.1| - 7.4 6.4 7.3 1.1 9.0 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Mrr_cat PF04471.12 gi|386002517|ref|YP_005920816.1| - 1.1e-09 38.3 0.0 1.8e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease HSDR_N_2 PF13588.6 gi|386002517|ref|YP_005920816.1| - 0.0071 16.3 0.6 0.42 10.6 0.0 2.5 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DBD_Tnp_Mut PF03108.15 gi|386002517|ref|YP_005920816.1| - 0.09 12.8 0.1 0.21 11.6 0.1 1.6 1 0 0 1 1 1 0 MuDR family transposase Polbeta PF18765.1 gi|386002518|ref|YP_005920817.1| - 1.1e-07 31.8 0.2 1.3e-07 31.6 0.2 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|386002518|ref|YP_005920817.1| - 0.00011 22.4 0.2 0.00013 22.2 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.9 gi|386002518|ref|YP_005920817.1| - 0.031 14.1 0.1 0.031 14.1 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG HicB_lk_antitox PF15919.5 gi|386002519|ref|YP_005920818.1| - 2.4e-11 43.8 0.0 3e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|386002519|ref|YP_005920818.1| - 0.0033 17.4 0.0 0.0045 16.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) AcetylCoA_hyd_C PF13336.6 gi|386002520|ref|YP_005920819.1| - 6.7e-60 201.5 0.0 9.8e-60 201.0 0.0 1.3 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 gi|386002520|ref|YP_005920819.1| - 6.9e-39 133.9 0.0 1.3e-38 133.0 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_3 PF13302.7 gi|386002520|ref|YP_005920819.1| - 1.7e-11 45.0 0.0 3.1e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|386002520|ref|YP_005920819.1| - 2.4e-08 34.2 0.1 6.1e-08 32.9 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|386002520|ref|YP_005920819.1| - 8.2e-08 32.2 0.2 7.3e-07 29.2 0.2 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|386002520|ref|YP_005920819.1| - 2.3e-05 24.8 0.1 6.1e-05 23.4 0.1 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|386002520|ref|YP_005920819.1| - 4.1e-05 23.8 0.0 7e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CoA_trans PF01144.23 gi|386002520|ref|YP_005920819.1| - 8e-05 22.1 0.0 0.34 10.3 0.0 3.0 3 0 0 3 3 3 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|386002520|ref|YP_005920819.1| - 0.00077 17.9 0.1 0.42 8.9 0.0 2.2 2 0 0 2 2 2 2 Malonate decarboxylase, alpha subunit, transporter FR47 PF08445.10 gi|386002520|ref|YP_005920819.1| - 0.0019 18.1 0.1 0.0044 17.0 0.1 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|386002520|ref|YP_005920819.1| - 0.011 15.5 0.1 0.022 14.5 0.1 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DeoRC PF00455.22 gi|386002520|ref|YP_005920819.1| - 0.016 15.1 0.0 0.077 12.9 0.0 2.0 3 0 0 3 3 3 0 DeoR C terminal sensor domain VWA_2 PF13519.6 gi|386002521|ref|YP_005920820.1| - 2.6e-14 53.8 0.0 4.9e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|386002521|ref|YP_005920820.1| - 3.8e-13 50.1 0.0 1.3e-12 48.3 0.0 1.8 1 1 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.9 gi|386002521|ref|YP_005920820.1| - 0.001 19.2 0.1 0.019 15.1 0.1 2.3 1 1 0 1 1 1 1 vWA found in TerF C terminus Citrate_synt PF00285.21 gi|386002522|ref|YP_005920821.1| - 4.9e-64 216.7 0.0 1.2e-63 215.3 0.0 1.5 1 1 0 1 1 1 1 Citrate synthase, C-terminal domain DDE_Tnp_IS66 PF03050.14 gi|386002523|ref|YP_005920822.1| - 7.7e-49 166.7 0.0 7.7e-49 166.7 0.0 1.7 2 0 0 2 2 2 1 Transposase IS66 family zf-IS66 PF13005.7 gi|386002523|ref|YP_005920822.1| - 6.5e-07 29.6 3.3 1.4e-06 28.5 3.3 1.6 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.6 gi|386002523|ref|YP_005920822.1| - 0.00013 22.2 0.1 0.00047 20.4 0.0 1.9 2 0 0 2 2 2 1 DDE domain DZR PF12773.7 gi|386002523|ref|YP_005920822.1| - 0.0035 17.3 0.1 0.0071 16.3 0.1 1.5 1 0 0 1 1 1 1 Double zinc ribbon DUF5623 PF18536.1 gi|386002523|ref|YP_005920822.1| - 0.012 15.9 0.0 0.048 14.0 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5623) TMF_DNA_bd PF12329.8 gi|386002523|ref|YP_005920822.1| - 0.013 15.5 4.6 0.048 13.7 3.0 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF737 PF05300.11 gi|386002523|ref|YP_005920822.1| - 0.027 14.8 5.2 0.064 13.6 5.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF737) MCC-bdg_PDZ PF10506.9 gi|386002523|ref|YP_005920822.1| - 0.052 13.6 1.8 0.16 12.0 1.8 1.9 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome zf-ribbon_3 PF13248.6 gi|386002523|ref|YP_005920822.1| - 0.056 12.9 2.2 5.9 6.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|386002523|ref|YP_005920822.1| - 0.074 12.8 2.1 3.2 7.6 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain MazG PF03819.17 gi|386002523|ref|YP_005920822.1| - 0.084 13.1 0.3 1.7 8.9 0.2 2.5 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain ZapB PF06005.12 gi|386002523|ref|YP_005920822.1| - 0.11 13.0 8.6 0.073 13.5 3.1 3.0 2 1 0 2 2 2 0 Cell division protein ZapB DivIVA PF05103.13 gi|386002523|ref|YP_005920822.1| - 0.14 12.3 4.1 0.19 11.8 1.9 2.1 2 0 0 2 2 2 0 DivIVA protein Zn-ribbon_8 PF09723.10 gi|386002523|ref|YP_005920822.1| - 0.14 12.3 0.5 22 5.3 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain DivIC PF04977.15 gi|386002523|ref|YP_005920822.1| - 0.21 11.4 4.0 0.68 9.7 4.0 1.8 1 0 0 1 1 1 0 Septum formation initiator TMCO5 PF14992.6 gi|386002523|ref|YP_005920822.1| - 0.3 10.6 1.8 0.36 10.4 0.6 1.7 2 0 0 2 2 2 0 TMCO5 family DNA_ligase_ZBD PF03119.16 gi|386002523|ref|YP_005920822.1| - 0.4 10.7 2.9 17 5.5 0.3 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.6 gi|386002523|ref|YP_005920822.1| - 0.79 9.1 3.2 15 5.0 0.3 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger Snf7 PF03357.21 gi|386002523|ref|YP_005920822.1| - 1.4 8.5 4.3 1.2 8.7 1.4 2.2 3 0 0 3 3 3 0 Snf7 UPF0547 PF10571.9 gi|386002523|ref|YP_005920822.1| - 1.4 9.0 3.8 16 5.7 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 XRCC4 PF06632.12 gi|386002523|ref|YP_005920822.1| - 1.9 7.3 5.8 0.8 8.5 2.0 2.0 2 0 0 2 2 2 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 bZIP_1 PF00170.21 gi|386002523|ref|YP_005920822.1| - 4.9 7.3 9.2 0.96 9.6 1.9 3.1 3 0 0 3 3 3 0 bZIP transcription factor Citrate_synt PF00285.21 gi|386002524|ref|YP_005920823.1| - 3.7e-42 144.7 0.0 4.1e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Transglut_core PF01841.19 gi|386002524|ref|YP_005920823.1| - 0.11 12.9 0.0 0.15 12.5 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like superfamily Alkyl_sulf_dimr PF14863.6 gi|386002525|ref|YP_005920824.1| - 2.2e-36 125.4 0.0 3.7e-36 124.6 0.0 1.3 1 0 0 1 1 1 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.27 gi|386002525|ref|YP_005920824.1| - 2.3e-13 50.6 1.8 3.8e-13 49.9 0.7 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Alkyl_sulf_C PF14864.6 gi|386002525|ref|YP_005920824.1| - 1.1e-08 35.4 0.0 2.5e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 Alkyl sulfatase C-terminal SCP2 PF02036.17 gi|386002525|ref|YP_005920824.1| - 0.017 15.6 0.0 0.038 14.5 0.0 1.6 1 0 0 1 1 1 0 SCP-2 sterol transfer family Lactamase_B_2 PF12706.7 gi|386002525|ref|YP_005920824.1| - 0.02 14.4 0.1 0.036 13.6 0.1 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain MycE_N PF17843.1 gi|386002525|ref|YP_005920824.1| - 0.032 14.7 0.0 0.091 13.2 0.0 1.7 1 0 0 1 1 1 0 MycE methyltransferase N-terminal HAD PF12710.7 gi|386002526|ref|YP_005920825.1| - 2.4e-16 60.7 0.0 3.3e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|386002526|ref|YP_005920825.1| - 3.1e-05 24.4 0.0 0.00036 20.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase TelA PF05816.11 gi|386002527|ref|YP_005920826.1| - 1.6e-74 250.9 11.7 2.2e-74 250.5 11.7 1.1 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) DUF148 PF02520.17 gi|386002527|ref|YP_005920826.1| - 0.11 12.7 0.4 0.11 12.7 0.4 3.3 3 1 1 4 4 4 0 Domain of unknown function DUF148 Fib_alpha PF08702.10 gi|386002527|ref|YP_005920826.1| - 0.13 12.4 11.7 1.6 8.9 0.5 3.8 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family KxDL PF10241.9 gi|386002527|ref|YP_005920826.1| - 2.3 8.6 8.4 5.8 7.3 0.5 3.1 3 0 0 3 3 3 0 Uncharacterized conserved protein VWA PF00092.28 gi|386002528|ref|YP_005920827.1| - 8e-19 68.5 0.1 1.6e-18 67.6 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|386002528|ref|YP_005920827.1| - 7.1e-12 45.9 0.0 2.2e-11 44.4 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain SBP_bac_11 PF13531.6 gi|386002528|ref|YP_005920827.1| - 1.6e-09 37.9 0.0 2.4e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Citrate_bind PF16114.5 gi|386002528|ref|YP_005920827.1| - 0.0057 16.2 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 ATP citrate lyase citrate-binding ALIX_LYPXL_bnd PF13949.6 gi|386002529|ref|YP_005920828.1| - 0.054 12.8 3.2 0.074 12.3 3.2 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV NPV_P10 PF05531.12 gi|386002529|ref|YP_005920828.1| - 2.2 8.8 5.0 27 5.3 1.0 2.6 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF4781 PF16013.5 gi|386002529|ref|YP_005920828.1| - 2.4 6.9 5.0 4.7 5.9 0.4 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4781) Sulfatase PF00884.23 gi|386002530|ref|YP_005920829.1| - 1.9e-88 296.8 0.0 2.6e-88 296.4 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|386002530|ref|YP_005920829.1| - 8e-05 22.4 0.1 0.0083 15.7 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|386002530|ref|YP_005920829.1| - 0.026 13.1 0.0 0.037 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Sulfatase PF00884.23 gi|386002531|ref|YP_005920830.1| - 1.4e-72 244.7 0.0 1.8e-72 244.4 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Sulfatase_C PF14707.6 gi|386002531|ref|YP_005920830.1| - 1.6e-06 28.8 0.0 3.2e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of aryl-sulfatase Phosphodiest PF01663.22 gi|386002531|ref|YP_005920830.1| - 6.8e-05 22.6 0.1 0.033 13.8 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4994 PF16385.5 gi|386002531|ref|YP_005920830.1| - 0.012 15.5 0.0 0.031 14.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function UPF0728 PF15092.6 gi|386002532|ref|YP_005920831.1| - 0.042 13.7 0.0 0.086 12.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0728 Radical_SAM PF04055.21 gi|386002533|ref|YP_005920832.1| - 1.7e-13 51.3 0.0 2.8e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SEC-C PF02810.15 gi|386002533|ref|YP_005920832.1| - 3.4e-11 42.8 6.7 6.8e-11 41.9 6.7 1.6 1 0 0 1 1 1 1 SEC-C motif SPASM PF13186.6 gi|386002533|ref|YP_005920832.1| - 9.8e-10 38.8 0.1 2.4e-09 37.6 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|386002533|ref|YP_005920832.1| - 0.00075 19.8 0.0 0.0018 18.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|386002533|ref|YP_005920832.1| - 0.082 13.1 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF772 PF05598.11 gi|386002534|ref|YP_005920833.1| - 6.2e-22 77.4 0.1 1.5e-21 76.2 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|386002534|ref|YP_005920833.1| - 2.1e-14 53.7 0.4 5.3e-14 52.4 0.4 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|386002534|ref|YP_005920833.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease TPR_1 PF00515.28 gi|386002535|ref|YP_005920834.1| - 3.4e-29 99.4 18.3 2e-06 27.3 0.1 7.9 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386002535|ref|YP_005920834.1| - 3.3e-28 95.5 8.9 9.1e-06 25.4 0.0 7.5 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386002535|ref|YP_005920834.1| - 8.8e-17 59.9 15.1 0.0022 18.1 0.0 6.9 8 0 0 8 8 7 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386002535|ref|YP_005920834.1| - 3.1e-14 53.0 0.2 0.00029 21.1 0.0 5.2 3 2 2 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386002535|ref|YP_005920834.1| - 5.4e-14 51.6 13.7 0.00054 19.6 0.0 6.8 5 2 2 7 7 7 5 TPR repeat TPR_6 PF13174.6 gi|386002535|ref|YP_005920834.1| - 2.7e-13 49.6 1.7 2.2 9.1 0.1 7.5 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386002535|ref|YP_005920834.1| - 2.8e-12 47.0 0.0 0.008 16.7 0.0 4.3 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386002535|ref|YP_005920834.1| - 4.5e-11 42.3 1.1 1.7 9.2 0.0 6.4 6 0 0 6 6 6 3 Tetratricopeptide repeat DUF3883 PF13020.6 gi|386002535|ref|YP_005920834.1| - 4.3e-10 39.5 1.3 8.4e-10 38.6 0.5 1.9 2 0 0 2 2 1 1 Domain of unknown function (DUF3883) TPR_16 PF13432.6 gi|386002535|ref|YP_005920834.1| - 1.2e-08 35.5 0.0 0.023 15.3 0.0 5.0 4 1 1 5 5 5 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386002535|ref|YP_005920834.1| - 2.5e-08 34.0 0.0 0.0037 17.4 0.0 3.2 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386002535|ref|YP_005920834.1| - 8.4e-08 32.4 0.0 0.46 11.4 0.0 6.4 2 2 5 7 7 7 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386002535|ref|YP_005920834.1| - 1.1e-07 32.0 4.8 0.0022 18.2 0.2 4.1 1 1 4 5 5 5 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|386002535|ref|YP_005920834.1| - 5.7e-07 29.1 3.2 3.1 8.1 0.0 6.9 7 1 1 8 8 7 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|386002535|ref|YP_005920834.1| - 1.5e-06 28.1 4.8 0.085 12.9 0.3 4.2 3 1 1 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.6 gi|386002535|ref|YP_005920834.1| - 0.0015 18.4 2.3 4.9 7.2 0.1 4.6 5 0 0 5 5 5 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|386002535|ref|YP_005920834.1| - 0.0089 15.0 0.7 0.31 9.9 0.0 2.8 2 1 1 3 3 3 1 NMDA receptor-regulated protein 1 Coatomer_E PF04733.14 gi|386002535|ref|YP_005920834.1| - 0.022 14.2 0.8 0.29 10.5 0.1 2.7 2 1 2 4 4 4 0 Coatomer epsilon subunit PknG_TPR PF16918.5 gi|386002535|ref|YP_005920834.1| - 0.12 11.0 0.0 0.52 9.0 0.0 2.0 2 1 0 2 2 2 0 Protein kinase G tetratricopeptide repeat Sel1 PF08238.12 gi|386002535|ref|YP_005920834.1| - 0.2 12.4 0.0 0.2 12.4 0.0 2.7 5 0 0 5 5 1 0 Sel1 repeat SWI2_SNF2 PF18766.1 gi|386002537|ref|YP_005920836.1| - 1.8e-28 99.8 3.1 5.7e-28 98.1 3.1 1.8 1 1 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|386002537|ref|YP_005920836.1| - 4.3e-19 69.2 0.2 1.6e-18 67.3 0.0 2.2 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|386002537|ref|YP_005920836.1| - 6.2e-15 55.6 0.1 1.5e-14 54.4 0.1 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Virulence_RhuM PF13310.6 gi|386002538|ref|YP_005920837.1| - 3.3e-119 396.8 6.2 4.6e-119 396.3 6.2 1.1 1 0 0 1 1 1 1 Virulence protein RhuM family Mrr_N PF14338.6 gi|386002538|ref|YP_005920837.1| - 0.025 14.7 0.1 0.025 14.7 0.1 2.5 4 0 0 4 4 4 0 Mrr N-terminal domain HTH_36 PF13730.6 gi|386002538|ref|YP_005920837.1| - 0.13 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Methylase_S PF01420.19 gi|386002539|ref|YP_005920838.1| - 6.7e-07 29.7 0.0 0.0066 16.7 0.0 2.4 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.16 gi|386002540|ref|YP_005920839.1| - 8.3e-54 183.0 0.0 1.2e-53 182.4 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|386002540|ref|YP_005920839.1| - 4.2e-22 79.3 0.2 2.4e-21 76.8 0.1 2.3 2 0 0 2 2 2 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|386002540|ref|YP_005920839.1| - 0.088 12.5 0.0 0.29 10.8 0.0 1.8 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Tma16 PF11176.8 gi|386002540|ref|YP_005920839.1| - 0.59 10.0 2.3 1.2 9.0 0.1 2.5 3 0 0 3 3 3 0 Translation machinery-associated protein 16 GCHY-1 PF02649.14 gi|386002542|ref|YP_005920841.1| - 8.9e-83 277.8 0.6 1e-82 277.6 0.6 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|386002542|ref|YP_005920841.1| - 0.00038 21.0 0.9 0.0083 16.7 0.2 2.8 2 1 0 2 2 2 1 Dihydroneopterin aldolase EspB PF05802.11 gi|386002542|ref|YP_005920841.1| - 0.026 14.5 0.2 0.038 14.0 0.2 1.2 1 0 0 1 1 1 0 Enterobacterial EspB protein MPTase-PolyVal PF18818.1 gi|386002542|ref|YP_005920841.1| - 0.19 11.8 1.3 9.8 6.3 0.1 2.4 2 0 0 2 2 2 0 Metallopeptidase superfamily domain PTS_2-RNA PF01885.16 gi|386002543|ref|YP_005920842.1| - 8.8e-24 84.5 0.0 1e-23 84.3 0.0 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Prenyltransf PF01255.19 gi|386002544|ref|YP_005920843.1| - 5.1e-21 75.2 0.0 1.3e-20 73.9 0.0 1.6 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.16 gi|386002545|ref|YP_005920844.1| - 6.3e-52 176.3 15.2 6.3e-52 176.3 15.2 2.1 2 2 0 2 2 2 1 Integral membrane protein DUF92 DHHC PF01529.20 gi|386002545|ref|YP_005920844.1| - 4.8 7.3 5.3 0.73 9.9 0.4 2.2 2 0 0 2 2 2 0 DHHC palmitoyltransferase DIM PF08194.12 gi|386002546|ref|YP_005920845.1| - 0.13 12.5 1.2 0.28 11.4 1.2 1.6 1 0 0 1 1 1 0 DIM protein Aminotran_1_2 PF00155.21 gi|386002547|ref|YP_005920846.1| - 1.2e-48 166.1 0.0 1.5e-48 165.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II SecD_SecF PF02355.16 gi|386002548|ref|YP_005920847.1| - 1.1e-15 57.5 10.5 2.6e-15 56.3 10.5 1.5 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|386002548|ref|YP_005920847.1| - 0.13 11.8 0.0 0.34 10.5 0.0 1.7 1 0 0 1 1 1 0 SecD/SecF GG Motif MMPL PF03176.15 gi|386002548|ref|YP_005920847.1| - 0.54 9.1 24.5 0.017 14.1 18.4 1.6 2 0 0 2 2 2 0 MMPL family SecD_SecF PF02355.16 gi|386002549|ref|YP_005920848.1| - 2.7e-29 101.9 8.7 2.7e-29 101.9 8.7 1.4 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|386002549|ref|YP_005920848.1| - 3.7e-06 26.2 0.0 8.1e-06 25.2 0.0 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif Phage_holin_3_6 PF07332.11 gi|386002549|ref|YP_005920848.1| - 0.004 17.2 2.4 0.004 17.2 2.4 3.0 3 0 0 3 3 3 2 Putative Actinobacterial Holin-X, holin superfamily III Patched PF02460.18 gi|386002549|ref|YP_005920848.1| - 0.022 12.9 11.6 0.032 12.3 11.6 1.2 1 0 0 1 1 1 0 Patched family MMPL PF03176.15 gi|386002549|ref|YP_005920848.1| - 6.7 5.5 17.4 0.073 12.0 8.7 1.8 2 0 0 2 2 2 0 MMPL family RraA-like PF03737.15 gi|386002550|ref|YP_005920849.1| - 3.8e-44 150.5 1.1 3.8e-44 150.5 1.1 2.1 3 0 0 3 3 3 1 Aldolase/RraA OMPdecase PF00215.24 gi|386002550|ref|YP_005920849.1| - 5.1e-21 75.3 5.4 1.3e-20 73.9 5.4 1.7 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.21 gi|386002550|ref|YP_005920849.1| - 1.6e-06 27.7 0.2 4.7e-06 26.2 0.1 1.8 1 1 1 2 2 2 1 Histidine biosynthesis protein ADH_zinc_N PF00107.26 gi|386002550|ref|YP_005920849.1| - 3.7e-06 26.9 3.3 0.00042 20.3 0.2 3.3 2 1 1 3 3 3 1 Zinc-binding dehydrogenase NanE PF04131.14 gi|386002550|ref|YP_005920849.1| - 2.3e-05 23.7 2.9 6.4e-05 22.2 1.6 2.1 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase HMGL-like PF00682.19 gi|386002550|ref|YP_005920849.1| - 7e-05 22.5 2.7 0.00025 20.7 0.4 2.1 1 1 1 2 2 2 1 HMGL-like TMP-TENI PF02581.17 gi|386002550|ref|YP_005920849.1| - 0.00012 21.4 2.2 0.00035 19.9 0.2 2.6 2 1 1 3 3 3 1 Thiamine monophosphate synthase ThiG PF05690.14 gi|386002550|ref|YP_005920849.1| - 0.00023 20.6 3.6 0.0004 19.8 3.6 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG PEP_mutase PF13714.6 gi|386002550|ref|YP_005920849.1| - 0.00037 20.0 1.9 0.038 13.4 0.1 2.5 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase Peripla_BP_4 PF13407.6 gi|386002550|ref|YP_005920849.1| - 0.00039 20.1 1.3 0.0013 18.3 0.9 1.8 1 1 1 2 2 2 1 Periplasmic binding protein domain Dus PF01207.17 gi|386002550|ref|YP_005920849.1| - 0.0032 16.6 0.1 0.0066 15.6 0.1 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|386002550|ref|YP_005920849.1| - 0.024 13.9 1.1 0.024 13.9 1.1 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Trp_syntA PF00290.20 gi|386002550|ref|YP_005920849.1| - 0.031 13.1 3.5 0.12 11.1 0.9 2.6 1 1 1 3 3 3 0 Tryptophan synthase alpha chain DUF561 PF04481.12 gi|386002550|ref|YP_005920849.1| - 0.039 13.1 0.2 0.13 11.5 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF561) DUF3983 PF13137.6 gi|386002550|ref|YP_005920849.1| - 0.054 13.3 2.0 0.22 11.3 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3983) CryBP1 PF07029.11 gi|386002550|ref|YP_005920849.1| - 0.058 13.5 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 CryBP1 protein PEP_hydrolase PF09370.10 gi|386002550|ref|YP_005920849.1| - 0.16 11.2 2.4 0.88 8.7 0.2 2.9 3 1 0 3 3 3 0 Phosphoenolpyruvate hydrolase-like IMPDH PF00478.25 gi|386002550|ref|YP_005920849.1| - 0.22 10.5 8.0 2 7.3 8.0 2.3 1 1 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|386002550|ref|YP_005920849.1| - 0.67 8.9 9.2 0.65 9.0 4.4 2.1 1 1 1 2 2 2 0 FMN-dependent dehydrogenase Ribul_P_3_epim PF00834.19 gi|386002550|ref|YP_005920849.1| - 1.4 8.3 3.7 9.6 5.5 3.6 2.3 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DAP_epimerase PF01678.19 gi|386002551|ref|YP_005920850.1| - 1.8e-54 183.0 0.6 3.1e-31 108.1 0.0 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|386002551|ref|YP_005920850.1| - 0.01 14.9 0.2 0.087 11.9 0.0 2.0 2 0 0 2 2 2 0 Proline racemase DHHA1 PF02272.19 gi|386002553|ref|YP_005920852.1| - 8.1e-19 68.4 0.9 8.1e-19 68.4 0.9 2.2 3 0 0 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|386002553|ref|YP_005920852.1| - 0.032 14.5 0.0 0.057 13.7 0.0 1.4 1 0 0 1 1 1 0 DHH family bPH_2 PF03703.14 gi|386002553|ref|YP_005920852.1| - 0.12 12.6 0.0 0.36 11.0 0.0 1.7 2 0 0 2 2 2 0 Bacterial PH domain RF3_C PF16658.5 gi|386002553|ref|YP_005920852.1| - 0.21 11.4 0.3 8.1 6.3 0.0 2.3 2 0 0 2 2 2 0 Class II release factor RF3, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|386002554|ref|YP_005920853.1| - 8e-23 80.2 0.1 2.1e-22 78.8 0.1 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|386002554|ref|YP_005920853.1| - 2.2e-21 76.3 0.0 5.2e-21 75.1 0.0 1.6 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|386002554|ref|YP_005920853.1| - 6.5e-17 60.7 2.9 1.4e-16 59.6 2.9 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-NADH-PPase PF09297.11 gi|386002554|ref|YP_005920853.1| - 0.00081 19.0 0.3 0.0013 18.3 0.3 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|386002554|ref|YP_005920853.1| - 0.001 18.5 0.3 0.28 10.7 0.0 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|386002554|ref|YP_005920853.1| - 0.0019 18.2 0.4 0.0033 17.4 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon FeoB_Cyto PF17910.1 gi|386002554|ref|YP_005920853.1| - 0.019 15.5 0.8 3.2 8.4 0.2 2.8 2 1 1 3 3 3 0 FeoB cytosolic helical domain RecR PF02132.15 gi|386002554|ref|YP_005920853.1| - 0.022 14.3 0.7 1 9.0 0.1 3.0 3 0 0 3 3 3 0 RecR protein zinc_ribbon_2 PF13240.6 gi|386002554|ref|YP_005920853.1| - 0.051 13.3 0.5 4.3 7.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.27 gi|386002554|ref|YP_005920853.1| - 0.09 12.4 0.3 1.1 9.0 0.1 2.6 2 0 0 2 2 2 0 GATA zinc finger Dodecin PF07311.12 gi|386002555|ref|YP_005920854.1| - 5.3e-27 93.8 0.6 5.9e-27 93.7 0.6 1.0 1 0 0 1 1 1 1 Dodecin Thioredoxin PF00085.20 gi|386002556|ref|YP_005920855.1| - 2.7e-20 72.3 0.0 3.3e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|386002556|ref|YP_005920855.1| - 2.7e-06 27.8 0.1 1e-05 25.9 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|386002556|ref|YP_005920855.1| - 4e-06 27.1 0.1 7.3e-05 23.0 0.1 2.1 1 1 1 2 2 2 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|386002556|ref|YP_005920855.1| - 0.00012 22.1 0.0 0.00018 21.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.21 gi|386002556|ref|YP_005920855.1| - 0.00046 20.1 0.0 0.00058 19.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|386002556|ref|YP_005920855.1| - 0.00055 20.2 0.0 0.0017 18.6 0.0 1.8 1 1 1 2 2 2 1 Thioredoxin-like TraF PF13728.6 gi|386002556|ref|YP_005920855.1| - 0.0015 18.4 0.0 0.0019 18.1 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein DUF2847 PF11009.8 gi|386002556|ref|YP_005920855.1| - 0.0022 17.8 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2847) Redoxin PF08534.10 gi|386002556|ref|YP_005920855.1| - 0.016 14.9 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 Redoxin Glutaredoxin PF00462.24 gi|386002556|ref|YP_005920855.1| - 0.023 14.9 0.1 0.039 14.2 0.1 1.4 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin_7 PF13899.6 gi|386002556|ref|YP_005920855.1| - 0.066 13.4 0.0 0.09 13.0 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like Adenylate_cycl PF01295.18 gi|386002557|ref|YP_005920856.1| - 0.13 10.9 0.0 0.15 10.6 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase, class-I tRNA-synt_2c PF01411.19 gi|386002558|ref|YP_005920857.1| - 1.4e-126 423.2 0.0 1.9e-126 422.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|386002558|ref|YP_005920857.1| - 5.9e-20 72.1 7.9 1.3e-19 70.9 7.9 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|386002558|ref|YP_005920857.1| - 2.9e-13 49.7 0.6 2.9e-13 49.7 0.6 1.9 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain DUF4926 PF16277.5 gi|386002558|ref|YP_005920857.1| - 0.18 11.2 0.5 33 3.9 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4926) MJ1316 PF04457.12 gi|386002559|ref|YP_005920858.1| - 4.6e-12 46.5 0.2 5.8e-12 46.2 0.2 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain Methyltransf_2 PF00891.18 gi|386002560|ref|YP_005920859.1| - 3.2e-18 65.8 0.0 4.4e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|386002560|ref|YP_005920859.1| - 1.5e-10 40.9 0.0 3e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_23 PF13489.6 gi|386002560|ref|YP_005920859.1| - 9.9e-08 32.0 0.0 1.5e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386002560|ref|YP_005920859.1| - 2.2e-06 28.3 0.0 5.9e-06 26.9 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002560|ref|YP_005920859.1| - 2e-05 25.2 0.0 6.8e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|386002560|ref|YP_005920859.1| - 0.00012 21.7 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_16 PF10294.9 gi|386002560|ref|YP_005920859.1| - 0.00035 20.3 0.0 0.00052 19.8 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase HTH_20 PF12840.7 gi|386002560|ref|YP_005920859.1| - 0.014 15.5 0.2 0.12 12.5 0.1 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain Methyltransf_19 PF04672.12 gi|386002560|ref|YP_005920859.1| - 0.041 13.4 0.1 0.07 12.6 0.1 1.3 1 0 0 1 1 1 0 S-adenosyl methyltransferase Methyltransf_24 PF13578.6 gi|386002560|ref|YP_005920859.1| - 0.058 14.4 0.0 0.17 12.9 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain TetR_C_11 PF16859.5 gi|386002560|ref|YP_005920859.1| - 0.13 12.6 4.5 0.69 10.2 1.7 2.9 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF802 PF05650.11 gi|386002560|ref|YP_005920859.1| - 0.62 10.6 4.1 2.1 8.8 4.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF802) PEMT PF04191.13 gi|386002561|ref|YP_005920860.1| - 1.9e-16 60.4 0.6 2.3e-16 60.1 0.1 1.4 2 0 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.14 gi|386002561|ref|YP_005920860.1| - 3.8e-05 24.0 0.0 5.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DUF1295 PF06966.12 gi|386002561|ref|YP_005920860.1| - 6.1e-05 22.7 0.0 7.8e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) NnrU PF07298.11 gi|386002561|ref|YP_005920860.1| - 0.0017 17.9 0.1 0.0022 17.5 0.1 1.1 1 0 0 1 1 1 1 NnrU protein SLAC1 PF03595.17 gi|386002561|ref|YP_005920860.1| - 0.0026 17.1 1.3 0.0033 16.7 1.3 1.1 1 0 0 1 1 1 1 Voltage-dependent anion channel ERG4_ERG24 PF01222.17 gi|386002561|ref|YP_005920860.1| - 0.042 12.6 0.0 0.056 12.2 0.0 1.2 1 0 0 1 1 1 0 Ergosterol biosynthesis ERG4/ERG24 family LTD PF00932.19 gi|386002562|ref|YP_005920861.1| - 6.4e-20 71.6 0.3 8.5e-20 71.2 0.3 1.1 1 0 0 1 1 1 1 Lamin Tail Domain LTD PF00932.19 gi|386002563|ref|YP_005920862.1| - 2.8e-15 56.6 0.1 3.6e-15 56.3 0.1 1.1 1 0 0 1 1 1 1 Lamin Tail Domain PQQ PF01011.21 gi|386002564|ref|YP_005920863.1| - 1.4e-36 122.7 18.6 1.1e-05 25.1 0.0 8.9 9 0 0 9 9 9 7 PQQ enzyme repeat PQQ_2 PF13360.6 gi|386002564|ref|YP_005920863.1| - 3.2e-34 118.6 7.0 1.4e-15 57.5 0.5 4.5 2 2 2 4 4 4 4 PQQ-like domain DOMON PF03351.17 gi|386002564|ref|YP_005920863.1| - 5.9e-25 87.9 0.0 9.2e-25 87.3 0.0 1.3 1 0 0 1 1 1 1 DOMON domain PQQ_3 PF13570.6 gi|386002564|ref|YP_005920863.1| - 2.9e-12 46.7 46.3 0.0065 16.9 0.0 10.4 9 2 0 9 9 9 5 PQQ-like domain EB_dh PF09459.10 gi|386002564|ref|YP_005920863.1| - 0.042 13.8 0.0 0.084 12.8 0.0 1.5 2 0 0 2 2 2 0 Ethylbenzene dehydrogenase DUF4905 PF16248.5 gi|386002564|ref|YP_005920863.1| - 0.24 11.3 2.0 9.4 6.2 0.0 3.9 5 0 0 5 5 5 0 Domain of unknown function (DUF4905) Polyketide_cyc2 PF10604.9 gi|386002565|ref|YP_005920864.1| - 6.4e-12 46.0 0.3 7.7e-12 45.7 0.3 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|386002565|ref|YP_005920864.1| - 2.5e-06 27.7 0.0 2.9e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.20 gi|386002565|ref|YP_005920864.1| - 1.1e-05 25.6 0.0 1.2e-05 25.5 0.0 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF11 PF01345.18 gi|386002566|ref|YP_005920865.1| - 2.4e-16 59.8 0.0 1.5e-06 28.4 0.0 2.8 2 0 0 2 2 2 2 Domain of unknown function DUF11 Chlam_OMP6 PF03504.13 gi|386002566|ref|YP_005920865.1| - 0.024 14.9 0.0 1.4 9.3 0.0 2.5 2 0 0 2 2 2 0 Chlamydia cysteine-rich outer membrane protein 6 DUF4929 PF16283.5 gi|386002566|ref|YP_005920865.1| - 0.025 13.6 0.0 0.041 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4929) Lactamase_B PF00753.27 gi|386002567|ref|YP_005920866.1| - 1.8e-15 57.5 0.6 9.5e-11 42.1 0.0 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|386002567|ref|YP_005920866.1| - 1.1e-06 28.3 0.1 1.9e-06 27.6 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|386002567|ref|YP_005920866.1| - 3.6e-05 23.7 0.0 5.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TAL_effector PF03377.13 gi|386002567|ref|YP_005920866.1| - 0.083 13.2 0.0 0.25 11.7 0.0 1.9 1 0 0 1 1 1 0 TAL effector repeat Nudix_N_2 PF14803.6 gi|386002568|ref|YP_005920867.1| - 0.0014 18.5 4.1 0.005 16.7 4.1 1.9 1 0 0 1 1 1 1 Nudix N-terminal RNA_POL_M_15KD PF02150.16 gi|386002568|ref|YP_005920867.1| - 0.0043 16.9 0.0 0.0073 16.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|386002568|ref|YP_005920867.1| - 0.01 15.2 1.7 0.18 11.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|386002568|ref|YP_005920867.1| - 0.018 15.4 0.5 0.044 14.2 0.5 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|386002568|ref|YP_005920867.1| - 0.022 14.8 0.4 0.036 14.1 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|386002568|ref|YP_005920867.1| - 0.028 14.3 1.1 0.94 9.4 0.1 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) NOB1_Zn_bind PF08772.11 gi|386002568|ref|YP_005920867.1| - 0.042 14.0 0.8 8.3 6.6 0.1 2.7 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.12 gi|386002568|ref|YP_005920867.1| - 0.059 12.9 6.4 0.1 12.2 0.7 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|386002568|ref|YP_005920867.1| - 0.062 13.0 2.2 0.8 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|386002568|ref|YP_005920867.1| - 0.073 12.8 1.5 1.4 8.6 0.2 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit FliMN_C PF01052.20 gi|386002568|ref|YP_005920867.1| - 0.087 12.8 0.9 7.7 6.6 0.4 2.8 2 1 1 3 3 3 0 Type III flagellar switch regulator (C-ring) FliN C-term OrfB_Zn_ribbon PF07282.11 gi|386002568|ref|YP_005920867.1| - 0.15 12.0 1.0 0.28 11.1 1.0 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RecR PF02132.15 gi|386002568|ref|YP_005920867.1| - 0.26 10.9 0.9 22 4.7 0.1 2.5 2 0 0 2 2 2 0 RecR protein zinc_ribbon_4 PF13717.6 gi|386002568|ref|YP_005920867.1| - 0.3 11.0 1.3 5.4 7.0 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|386002568|ref|YP_005920867.1| - 0.38 10.5 4.7 5.9 6.6 4.7 2.3 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-RING_7 PF02591.15 gi|386002568|ref|YP_005920867.1| - 0.41 10.9 5.6 12 6.1 0.9 3.0 3 0 0 3 3 2 0 C4-type zinc ribbon domain zf-ISL3 PF14690.6 gi|386002568|ref|YP_005920867.1| - 0.68 10.6 3.6 4.3 8.1 3.0 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 gi|386002568|ref|YP_005920867.1| - 0.78 9.9 4.0 3.1 8.0 4.0 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|386002568|ref|YP_005920867.1| - 3.3 7.7 5.2 11 6.1 5.2 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 PCMT PF01135.19 gi|386002569|ref|YP_005920868.1| - 1.1e-68 231.2 0.0 1.2e-68 231.0 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|386002569|ref|YP_005920868.1| - 8.8e-16 58.0 0.0 1.1e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386002569|ref|YP_005920868.1| - 2.5e-09 37.7 0.0 4e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|386002569|ref|YP_005920868.1| - 9.3e-09 35.3 0.0 1.2e-08 35.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_11 PF08241.12 gi|386002569|ref|YP_005920868.1| - 8.7e-07 29.5 0.0 1.7e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|386002569|ref|YP_005920868.1| - 9.2e-06 25.3 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|386002569|ref|YP_005920868.1| - 3.4e-05 23.3 0.0 4.5e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|386002569|ref|YP_005920868.1| - 4.9e-05 23.1 0.0 7.3e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F CMAS PF02353.20 gi|386002569|ref|YP_005920868.1| - 0.00014 21.3 0.0 0.00019 20.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GidB PF02527.15 gi|386002569|ref|YP_005920868.1| - 0.00015 21.1 0.0 0.00018 20.9 0.0 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G RrnaAD PF00398.20 gi|386002569|ref|YP_005920868.1| - 0.0002 20.5 0.0 0.00028 20.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.17 gi|386002569|ref|YP_005920868.1| - 0.00044 19.5 0.0 0.00057 19.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_4 PF02390.17 gi|386002569|ref|YP_005920868.1| - 0.00051 19.6 0.0 0.00081 18.9 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Fibrillarin PF01269.17 gi|386002569|ref|YP_005920868.1| - 0.0012 18.0 0.0 0.0019 17.3 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin PrmA PF06325.13 gi|386002569|ref|YP_005920868.1| - 0.0042 16.5 0.0 0.0051 16.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|386002569|ref|YP_005920868.1| - 0.0061 16.4 0.0 0.0071 16.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|386002569|ref|YP_005920868.1| - 0.01 15.8 0.1 0.046 13.7 0.0 1.8 1 1 0 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|386002569|ref|YP_005920868.1| - 0.028 14.4 0.0 0.041 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_5 PF01795.19 gi|386002569|ref|YP_005920868.1| - 0.056 12.9 0.0 0.081 12.4 0.0 1.1 1 0 0 1 1 1 0 MraW methylase family Methyltransf_2 PF00891.18 gi|386002569|ref|YP_005920868.1| - 0.072 12.4 0.1 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 O-methyltransferase domain DUF938 PF06080.12 gi|386002569|ref|YP_005920868.1| - 0.086 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Met_10 PF02475.16 gi|386002569|ref|YP_005920868.1| - 0.14 11.9 0.0 0.19 11.4 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein iPGM_N PF06415.13 gi|386002570|ref|YP_005920869.1| - 4.6e-83 277.9 0.0 6.3e-83 277.5 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|386002570|ref|YP_005920869.1| - 4.4e-78 262.1 0.0 5.1e-78 261.9 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|386002570|ref|YP_005920869.1| - 7.7e-06 25.5 0.0 2e-05 24.2 0.0 1.7 2 0 0 2 2 2 1 Sulfatase Phosphodiest PF01663.22 gi|386002570|ref|YP_005920869.1| - 9e-05 22.2 0.0 0.00015 21.4 0.0 1.3 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|386002570|ref|YP_005920869.1| - 0.025 14.7 0.1 0.052 13.6 0.1 1.5 1 0 0 1 1 1 0 PglZ domain VIT1 PF01988.19 gi|386002571|ref|YP_005920870.1| - 4.6e-18 65.9 15.9 3.7e-12 46.6 6.2 2.0 1 1 1 2 2 2 2 VIT family Peptidase_M20 PF01546.28 gi|386002572|ref|YP_005920871.1| - 7.1e-38 130.4 0.0 1.1e-37 129.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|386002572|ref|YP_005920871.1| - 2.7e-22 78.7 0.0 5.7e-22 77.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|386002572|ref|YP_005920871.1| - 3.9e-05 23.4 0.0 5.7e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 MobB PF03205.14 gi|386002573|ref|YP_005920872.1| - 3.7e-17 62.5 0.1 4.5e-17 62.2 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.6 gi|386002573|ref|YP_005920872.1| - 0.039 13.7 0.1 0.058 13.1 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|386002573|ref|YP_005920872.1| - 0.063 13.3 0.1 0.09 12.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|386002573|ref|YP_005920872.1| - 0.08 12.3 0.3 0.12 11.7 0.3 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 gi|386002573|ref|YP_005920872.1| - 0.11 12.6 0.3 0.15 12.2 0.3 1.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|386002573|ref|YP_005920872.1| - 0.12 12.4 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Dynamin family AAA_23 PF13476.6 gi|386002573|ref|YP_005920872.1| - 0.18 12.3 0.0 0.18 12.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|386002573|ref|YP_005920872.1| - 0.25 11.1 0.3 0.34 10.7 0.3 1.1 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein TrwB_AAD_bind PF10412.9 gi|386002573|ref|YP_005920872.1| - 0.3 10.0 0.1 0.48 9.3 0.1 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Radical_SAM PF04055.21 gi|386002575|ref|YP_005920874.1| - 4.9e-11 43.3 0.0 2.1e-10 41.3 0.0 1.9 1 1 1 2 2 2 1 Radical SAM superfamily CbiX PF01903.17 gi|386002575|ref|YP_005920874.1| - 0.035 14.4 0.0 0.11 12.9 0.0 1.8 1 0 0 1 1 1 0 CbiX RNHCP PF12647.7 gi|386002576|ref|YP_005920875.1| - 0.2 11.6 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 RNHCP domain DapB_C PF05173.14 gi|386002577|ref|YP_005920876.1| - 9.4e-42 141.9 0.0 1.3e-41 141.4 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|386002577|ref|YP_005920876.1| - 8.9e-26 90.4 0.0 1.6e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Peripla_BP_6 PF13458.6 gi|386002577|ref|YP_005920876.1| - 0.014 15.0 0.2 0.035 13.8 0.1 1.5 1 1 0 1 1 1 0 Periplasmic binding protein DHDPS PF00701.22 gi|386002578|ref|YP_005920877.1| - 4.4e-95 317.7 0.0 4.9e-95 317.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Ribosomal_S17e PF00833.18 gi|386002579|ref|YP_005920878.1| - 3e-11 43.3 0.4 3.4e-11 43.1 0.4 1.0 1 0 0 1 1 1 1 Ribosomal S17 Phos_pyr_kin PF08543.12 gi|386002580|ref|YP_005920879.1| - 5.6e-78 261.7 0.1 7.1e-78 261.4 0.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|386002580|ref|YP_005920879.1| - 1.9e-58 196.7 0.0 2.8e-58 196.2 0.0 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|386002580|ref|YP_005920879.1| - 2.8e-08 33.4 1.4 5.1e-08 32.6 1.4 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Clathrin_H_link PF13838.6 gi|386002581|ref|YP_005920880.1| - 1.8e-06 27.8 7.0 0.5 10.3 0.0 5.0 4 1 1 5 5 5 5 Clathrin-H-link DUF61 PF01886.16 gi|386002582|ref|YP_005920881.1| - 5.7e-44 149.2 0.3 6.4e-44 149.0 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 HD PF01966.22 gi|386002583|ref|YP_005920882.1| - 3.3e-12 46.7 2.6 5.2e-12 46.1 1.1 2.2 2 1 0 2 2 2 1 HD domain HDOD PF08668.12 gi|386002583|ref|YP_005920882.1| - 0.09 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 HDOD domain NosD PF05048.13 gi|386002585|ref|YP_005920884.1| - 5.1e-28 98.0 0.3 8.5e-28 97.2 0.3 1.3 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386002585|ref|YP_005920884.1| - 4.2e-09 36.4 4.1 4.2e-09 36.4 4.1 2.0 1 1 1 2 2 2 1 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|386002585|ref|YP_005920884.1| - 0.1 12.4 0.9 0.3 10.9 0.6 1.7 1 1 1 2 2 2 0 Pectate lyase superfamily protein DeoC PF01791.9 gi|386002586|ref|YP_005920885.1| - 2.9e-62 210.4 0.1 3.7e-62 210.0 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase PEP_mutase PF13714.6 gi|386002586|ref|YP_005920885.1| - 0.013 15.0 0.2 2.1 7.7 0.0 2.6 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase Peripla_BP_4 PF13407.6 gi|386002586|ref|YP_005920885.1| - 0.033 13.8 0.1 0.082 12.5 0.0 1.6 2 0 0 2 2 2 0 Periplasmic binding protein domain DUF2862 PF11061.8 gi|386002586|ref|YP_005920885.1| - 0.44 10.4 2.2 11 5.9 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2862) PC4 PF02229.16 gi|386002587|ref|YP_005920886.1| - 1.5e-11 43.7 0.2 1.9e-11 43.4 0.2 1.1 1 0 0 1 1 1 1 Transcriptional Coactivator p15 (PC4) TOPRIM_C PF16898.5 gi|386002588|ref|YP_005920887.1| - 0.14 12.5 0.0 0.25 11.6 0.0 1.3 1 0 0 1 1 1 0 C-terminal associated domain of TOPRIM eIF2_C PF09173.11 gi|386002589|ref|YP_005920888.1| - 3.7e-31 107.2 0.1 8.8e-31 106.0 0.1 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|386002589|ref|YP_005920888.1| - 1.4e-27 96.5 0.8 1.6e-26 93.0 0.8 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|386002589|ref|YP_005920888.1| - 1.1e-07 32.1 0.5 3.6e-07 30.5 0.5 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|386002589|ref|YP_005920888.1| - 3.3e-05 23.9 0.4 0.00076 19.4 0.1 2.3 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|386002589|ref|YP_005920888.1| - 0.004 17.2 0.3 0.0079 16.2 0.3 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Nop10p PF04135.12 gi|386002589|ref|YP_005920888.1| - 0.007 16.4 0.4 0.013 15.5 0.4 1.4 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family cobW PF02492.19 gi|386002589|ref|YP_005920888.1| - 0.018 14.6 0.0 0.21 11.2 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|386002589|ref|YP_005920888.1| - 0.032 14.3 0.0 0.08 13.0 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase zinc-ribbons_6 PF07191.12 gi|386002589|ref|YP_005920888.1| - 0.087 12.8 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbons Ras PF00071.22 gi|386002589|ref|YP_005920888.1| - 0.096 12.3 0.2 0.2 11.2 0.1 1.6 2 0 0 2 2 2 0 Ras family PduV-EutP PF10662.9 gi|386002589|ref|YP_005920888.1| - 0.18 11.6 0.5 6.8 6.4 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation PIN_9 PF18477.1 gi|386002590|ref|YP_005920889.1| - 5.5e-39 133.1 0.1 6.3e-39 132.9 0.1 1.0 1 0 0 1 1 1 1 PIN like domain SHS2_Rpb7-N PF03876.17 gi|386002591|ref|YP_005920890.1| - 2.4e-18 66.2 0.0 3.9e-18 65.6 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|386002591|ref|YP_005920890.1| - 6.4e-14 52.0 0.1 1.3e-13 51.0 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|386002591|ref|YP_005920890.1| - 0.017 15.4 0.3 0.081 13.2 0.3 1.9 1 1 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|386002592|ref|YP_005920891.1| - 2.5e-14 53.1 0.1 3.2e-14 52.8 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|386002592|ref|YP_005920891.1| - 0.012 15.2 1.6 0.016 14.7 1.6 1.2 1 0 0 1 1 1 0 RecR protein zf-RRN7 PF11781.8 gi|386002592|ref|YP_005920891.1| - 0.019 14.6 2.6 0.18 11.5 0.1 2.2 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ribbon_3 PF13248.6 gi|386002592|ref|YP_005920891.1| - 0.023 14.1 1.4 0.041 13.3 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|386002592|ref|YP_005920891.1| - 0.031 13.8 0.3 0.15 11.6 0.0 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding DTW PF03942.15 gi|386002592|ref|YP_005920891.1| - 0.075 12.7 0.1 0.078 12.7 0.1 1.0 1 0 0 1 1 1 0 DTW domain Zn-ribbon_8 PF09723.10 gi|386002592|ref|YP_005920891.1| - 0.19 11.9 2.5 0.72 10.0 2.5 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF359 PF04019.12 gi|386002593|ref|YP_005920892.1| - 3.6e-40 136.5 0.1 4.4e-40 136.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.19 gi|386002594|ref|YP_005920893.1| - 7.5e-24 83.5 0.1 9.5e-24 83.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|386002595|ref|YP_005920894.1| - 6.7e-19 67.8 1.7 7.3e-19 67.7 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.6 gi|386002595|ref|YP_005920894.1| - 5.1e-06 26.3 0.8 0.017 15.0 0.0 2.1 2 0 0 2 2 2 2 Nudix N-terminal Ribosomal_L37e PF01907.19 gi|386002595|ref|YP_005920894.1| - 0.00093 19.3 1.7 0.0011 19.1 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e Zn_Tnp_IS1595 PF12760.7 gi|386002595|ref|YP_005920894.1| - 0.017 15.1 2.9 0.028 14.4 2.9 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF1451 PF07295.11 gi|386002595|ref|YP_005920894.1| - 0.02 14.9 0.5 0.021 14.9 0.5 1.0 1 0 0 1 1 1 0 Zinc-ribbon containing domain IBR PF01485.21 gi|386002595|ref|YP_005920894.1| - 0.023 14.9 0.1 0.023 14.9 0.1 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain RNA_POL_M_15KD PF02150.16 gi|386002595|ref|YP_005920894.1| - 0.026 14.4 2.8 0.076 12.9 2.8 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.6 gi|386002595|ref|YP_005920894.1| - 0.034 14.5 1.4 0.049 14.0 1.4 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|386002595|ref|YP_005920894.1| - 0.035 14.1 1.3 0.057 13.4 1.3 1.3 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|386002595|ref|YP_005920894.1| - 0.059 13.1 4.1 1.2 9.0 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|386002595|ref|YP_005920894.1| - 0.085 12.8 1.3 0.11 12.4 1.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_13 PF09855.9 gi|386002595|ref|YP_005920894.1| - 0.13 12.4 3.3 0.7 10.1 0.5 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF4100 PF13352.6 gi|386002595|ref|YP_005920894.1| - 0.15 11.8 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4100) zinc_ribbon_9 PF14369.6 gi|386002595|ref|YP_005920894.1| - 0.31 11.3 2.8 0.59 10.4 0.4 2.0 1 1 1 2 2 2 0 zinc-ribbon zf-NADH-PPase PF09297.11 gi|386002595|ref|YP_005920894.1| - 0.32 10.7 4.6 1.3 8.7 0.4 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|386002595|ref|YP_005920894.1| - 0.45 10.0 7.4 7.5 6.1 7.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|386002595|ref|YP_005920894.1| - 0.46 10.7 4.2 6.8 6.9 4.2 2.0 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Band_7 PF01145.25 gi|386002596|ref|YP_005920895.1| - 5.9e-36 124.1 2.2 8.4e-36 123.6 2.2 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|386002596|ref|YP_005920895.1| - 6.5e-06 26.0 0.1 9.7e-06 25.4 0.1 1.3 1 0 0 1 1 1 1 SPFH domain-Band 7 family HicB_lk_antitox PF15919.5 gi|386002596|ref|YP_005920895.1| - 0.11 12.6 1.0 2.2 8.4 0.0 2.5 1 1 1 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system NfeD PF01957.18 gi|386002597|ref|YP_005920896.1| - 6e-13 49.0 0.1 2.1e-12 47.2 0.1 2.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|386002597|ref|YP_005920896.1| - 0.00054 19.9 0.1 0.00088 19.2 0.1 1.3 1 0 0 1 1 1 1 Clp protease FMN_dh PF01070.18 gi|386002597|ref|YP_005920896.1| - 0.002 17.3 0.0 0.0066 15.5 0.0 1.5 1 1 0 1 1 1 1 FMN-dependent dehydrogenase EF-G-binding_N PF07299.11 gi|386002597|ref|YP_005920896.1| - 0.097 13.2 0.2 0.18 12.4 0.2 1.3 1 0 0 1 1 1 0 Elongation factor G-binding protein, N-terminal ECH_1 PF00378.20 gi|386002597|ref|YP_005920896.1| - 0.27 10.5 1.0 1.8 7.8 0.0 2.2 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase Usp PF00582.26 gi|386002598|ref|YP_005920897.1| - 2.2e-17 63.9 2.4 2.8e-17 63.6 2.4 1.2 1 0 0 1 1 1 1 Universal stress protein family Nitro_FeMo-Co PF02579.17 gi|386002598|ref|YP_005920897.1| - 0.083 13.2 0.1 0.11 12.9 0.1 1.5 1 1 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor NfeD PF01957.18 gi|386002599|ref|YP_005920898.1| - 1.5e-14 54.1 0.1 2.2e-14 53.6 0.1 1.2 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF1129 PF06570.11 gi|386002599|ref|YP_005920898.1| - 0.052 13.0 0.1 0.059 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) RseC_MucC PF04246.12 gi|386002599|ref|YP_005920898.1| - 0.16 12.0 0.6 7.7 6.5 0.0 2.1 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC TPR_1 PF00515.28 gi|386002600|ref|YP_005920899.1| - 3.3e-29 99.5 15.9 4.8e-07 29.3 0.0 9.5 9 1 0 9 9 9 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386002600|ref|YP_005920899.1| - 5.5e-25 85.4 13.2 0.00098 19.1 0.1 9.5 9 1 0 9 9 9 6 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386002600|ref|YP_005920899.1| - 2.4e-21 74.5 1.4 4e-05 23.7 0.0 6.4 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386002600|ref|YP_005920899.1| - 1.8e-17 62.0 9.1 0.00041 20.3 0.0 7.7 9 0 0 9 9 9 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386002600|ref|YP_005920899.1| - 2.9e-13 49.2 19.9 0.00048 19.7 0.0 7.5 6 3 3 9 9 9 4 TPR repeat TPR_16 PF13432.6 gi|386002600|ref|YP_005920899.1| - 4.8e-13 49.5 0.1 0.00018 22.0 0.0 3.7 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386002600|ref|YP_005920899.1| - 4.5e-09 36.4 0.4 2.7 9.0 0.1 6.5 5 2 3 8 8 6 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386002600|ref|YP_005920899.1| - 4.6e-09 36.4 3.4 0.2 12.0 0.1 5.0 3 2 3 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386002600|ref|YP_005920899.1| - 5e-09 36.5 0.4 0.012 16.1 0.0 4.7 5 0 0 5 5 5 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|386002600|ref|YP_005920899.1| - 1.7e-08 33.9 0.5 0.021 13.8 0.0 4.0 3 1 1 4 4 4 3 NMDA receptor-regulated protein 1 TPR_9 PF13371.6 gi|386002600|ref|YP_005920899.1| - 3e-06 27.3 0.0 1.6 8.9 0.0 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386002600|ref|YP_005920899.1| - 1.4e-05 25.3 2.5 0.35 11.1 0.0 4.3 3 1 1 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.7 gi|386002600|ref|YP_005920899.1| - 3.2e-05 24.0 4.2 0.31 11.1 0.1 4.2 3 2 1 4 4 4 2 Domain of Unknown Function (DUF3856) TPR_15 PF13429.6 gi|386002600|ref|YP_005920899.1| - 0.00057 19.2 0.7 3 7.0 0.0 4.2 3 1 2 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386002600|ref|YP_005920899.1| - 0.00089 19.0 4.5 4.3 7.3 0.0 4.6 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_21 PF09976.9 gi|386002600|ref|YP_005920899.1| - 0.0018 18.1 0.7 4.4 7.0 0.0 3.6 2 1 1 3 3 3 2 Tetratricopeptide repeat-like domain EcsB PF05975.12 gi|386002600|ref|YP_005920899.1| - 0.013 14.4 2.1 0.017 14.0 2.1 1.1 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB YfhO PF09586.10 gi|386002600|ref|YP_005920899.1| - 0.033 12.4 6.2 0.05 11.9 6.2 1.2 1 0 0 1 1 1 0 Bacterial membrane protein YfhO TPR_6 PF13174.6 gi|386002600|ref|YP_005920899.1| - 0.14 12.9 3.8 82 4.2 0.0 5.2 6 0 0 6 6 5 0 Tetratricopeptide repeat RseC_MucC PF04246.12 gi|386002600|ref|YP_005920899.1| - 0.28 11.1 0.6 0.59 10.1 0.6 1.5 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Wzy_C PF04932.15 gi|386002600|ref|YP_005920899.1| - 2.8 7.5 10.6 0.4 10.3 3.0 2.3 1 1 1 2 2 2 0 O-Antigen ligase MCM PF00493.23 gi|386002601|ref|YP_005920900.1| - 1.3e-97 325.3 0.0 1.8e-97 324.9 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|386002601|ref|YP_005920900.1| - 4.1e-35 120.4 0.0 6.7e-35 119.7 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|386002601|ref|YP_005920900.1| - 4.5e-28 97.5 0.0 8.7e-28 96.6 0.0 1.5 1 0 0 1 1 1 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|386002601|ref|YP_005920900.1| - 5.3e-09 35.8 0.1 9.9e-07 28.3 0.1 2.5 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|386002601|ref|YP_005920900.1| - 1.4e-08 34.9 0.0 3.3e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|386002601|ref|YP_005920900.1| - 0.00012 22.0 0.0 0.00042 20.2 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM_N PF14551.6 gi|386002601|ref|YP_005920900.1| - 0.0022 18.6 0.1 0.013 16.1 0.0 2.3 2 0 0 2 2 2 1 MCM N-terminal domain Sigma54_activat PF00158.26 gi|386002601|ref|YP_005920900.1| - 0.0039 16.9 0.0 0.047 13.4 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|386002601|ref|YP_005920900.1| - 0.009 16.4 0.4 0.058 13.8 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|386002601|ref|YP_005920900.1| - 0.11 12.2 0.1 1.1 9.0 0.1 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|386002601|ref|YP_005920900.1| - 0.14 12.6 0.0 0.45 10.9 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zn-ribbon_8 PF09723.10 gi|386002601|ref|YP_005920900.1| - 0.51 10.5 4.3 1.2 9.3 4.3 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF424 PF04242.13 gi|386002602|ref|YP_005920901.1| - 9.2e-27 93.2 0.1 1e-26 93.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.13 gi|386002603|ref|YP_005920902.1| - 7.3e-45 153.3 0.0 8.7e-45 153.1 0.0 1.1 1 0 0 1 1 1 1 NMD3 family Zn-ribbon_8 PF09723.10 gi|386002603|ref|YP_005920902.1| - 0.11 12.7 9.3 0.43 10.7 0.8 3.3 3 0 0 3 3 3 0 Zinc ribbon domain TerY_C PF15616.6 gi|386002603|ref|YP_005920902.1| - 0.57 10.3 4.0 0.21 11.7 1.2 1.6 2 0 0 2 2 2 0 TerY-C metal binding domain RecR PF02132.15 gi|386002603|ref|YP_005920902.1| - 1.2 8.8 6.3 2.6 7.7 0.7 3.2 3 0 0 3 3 3 0 RecR protein DZR PF12773.7 gi|386002603|ref|YP_005920902.1| - 3.4 7.8 7.5 10 6.3 3.6 2.7 2 1 0 2 2 2 0 Double zinc ribbon Toprim_4 PF13662.6 gi|386002604|ref|YP_005920903.1| - 1.2e-12 48.1 0.3 3.1e-12 46.8 0.2 1.8 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|386002604|ref|YP_005920903.1| - 8.5e-07 29.3 0.0 2e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|386002604|ref|YP_005920903.1| - 0.00013 22.1 0.5 0.0008 19.6 0.1 2.5 2 2 0 2 2 2 1 Toprim domain PTH2 PF01981.16 gi|386002605|ref|YP_005920904.1| - 5.8e-36 123.3 0.1 6.5e-36 123.2 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TruD PF01142.18 gi|386002606|ref|YP_005920905.1| - 2.1e-155 517.6 0.0 2.4e-155 517.5 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF5559 PF17714.1 gi|386002606|ref|YP_005920905.1| - 0.18 11.7 3.0 0.46 10.3 0.1 2.6 2 1 1 3 3 3 0 Family of unknown function (DUF5559) DUF1743 PF08489.11 gi|386002607|ref|YP_005920906.1| - 4.1e-10 39.7 0.2 5e-07 29.8 0.0 3.3 2 1 0 2 2 2 2 Domain of unknown function (DUF1743) TPP_enzyme_C PF02775.21 gi|386002608|ref|YP_005920907.1| - 1.2e-07 31.6 0.2 2.9e-07 30.4 0.2 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|386002608|ref|YP_005920907.1| - 0.00085 19.0 1.0 0.056 13.0 0.7 2.8 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF3367 PF11847.8 gi|386002608|ref|YP_005920907.1| - 0.14 10.0 0.3 0.24 9.2 0.3 1.3 1 0 0 1 1 1 0 Alpha-(1->3)-arabinofuranosyltransferase Lactamase_B PF00753.27 gi|386002609|ref|YP_005920908.1| - 4.6e-11 43.1 1.7 6.8e-11 42.5 0.9 1.7 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|386002609|ref|YP_005920908.1| - 9.4e-07 28.5 0.0 1.4e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TrkH PF02386.16 gi|386002610|ref|YP_005920909.1| - 7.9e-49 166.4 14.4 1.2e-39 136.2 7.2 4.0 2 1 1 4 4 4 3 Cation transport protein TrkH PF02386.16 gi|386002611|ref|YP_005920910.1| - 5.8e-48 163.6 18.4 4.7e-39 134.2 6.0 4.5 2 1 2 4 4 4 3 Cation transport protein HMGL-like PF00682.19 gi|386002612|ref|YP_005920911.1| - 2.8e-82 276.2 0.9 3.6e-82 275.9 0.9 1.1 1 0 0 1 1 1 1 HMGL-like Beta_helix PF13229.6 gi|386002613|ref|YP_005920912.1| - 6.2e-24 84.6 14.7 6.2e-24 84.6 14.7 1.9 1 1 1 2 2 2 1 Right handed beta helix region NosD PF05048.13 gi|386002613|ref|YP_005920912.1| - 9.8e-21 74.1 11.1 1.4e-20 73.6 11.1 1.3 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.7 gi|386002613|ref|YP_005920912.1| - 1.3e-06 28.4 5.1 2.1e-06 27.7 5.1 1.3 1 0 0 1 1 1 1 Pectate lyase superfamily protein DUF1565 PF07602.11 gi|386002613|ref|YP_005920912.1| - 0.00016 21.1 13.2 0.00067 19.1 13.2 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) DUF4957 PF16318.5 gi|386002613|ref|YP_005920912.1| - 0.031 14.2 0.6 0.13 12.2 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4957) Glu_cyclase_2 PF05096.12 gi|386002614|ref|YP_005920913.1| - 3.8e-96 321.4 0.0 4.5e-96 321.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine cyclotransferase PQQ_3 PF13570.6 gi|386002614|ref|YP_005920913.1| - 0.85 10.2 5.1 3.8 8.1 0.0 3.3 4 0 0 4 4 4 0 PQQ-like domain TrmB PF01978.19 gi|386002615|ref|YP_005920914.1| - 0.00047 20.0 0.0 0.00072 19.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|386002615|ref|YP_005920914.1| - 0.063 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.14 gi|386002615|ref|YP_005920914.1| - 0.066 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family BamHI PF02923.15 gi|386002615|ref|YP_005920914.1| - 0.066 13.0 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease BamHI FeoA PF04023.14 gi|386002616|ref|YP_005920915.1| - 5e-15 55.5 0.0 5.6e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 FeoA domain PCSK9_C1 PF18459.1 gi|386002616|ref|YP_005920915.1| - 0.02 15.0 0.1 0.025 14.7 0.1 1.2 1 0 0 1 1 1 0 Proprotein convertase subtilisin-like/kexin type 9 C-terminal domain ETF_alpha PF00766.19 gi|386002616|ref|YP_005920915.1| - 0.028 14.5 0.1 0.046 13.7 0.1 1.4 1 0 0 1 1 1 0 Electron transfer flavoprotein FAD-binding domain His_biosynth PF00977.21 gi|386002617|ref|YP_005920916.1| - 5.6e-80 268.1 0.0 6.4e-80 267.9 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|386002617|ref|YP_005920916.1| - 6.8e-08 32.0 0.0 0.00041 19.5 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|386002617|ref|YP_005920916.1| - 7.3e-07 28.9 2.0 0.0037 16.7 0.2 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|386002617|ref|YP_005920916.1| - 9.3e-06 25.1 0.1 0.0023 17.3 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|386002617|ref|YP_005920916.1| - 4.5e-05 22.8 0.1 0.03 13.5 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|386002617|ref|YP_005920916.1| - 6e-05 22.5 0.2 0.0033 16.9 0.1 2.1 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|386002617|ref|YP_005920916.1| - 0.00027 20.3 0.2 0.18 11.2 0.1 2.1 2 0 0 2 2 2 2 Thiamine monophosphate synthase IMPDH PF00478.25 gi|386002617|ref|YP_005920916.1| - 0.0085 15.1 0.3 0.71 8.8 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain PcrB PF01884.17 gi|386002617|ref|YP_005920916.1| - 0.017 14.6 0.1 0.028 13.9 0.1 1.3 1 0 0 1 1 1 0 PcrB family TRI9 PF08195.11 gi|386002617|ref|YP_005920916.1| - 0.049 13.5 0.6 0.13 12.1 0.0 1.9 2 0 0 2 2 2 0 TRI9 protein Trp_syntA PF00290.20 gi|386002617|ref|YP_005920916.1| - 0.078 11.8 0.1 0.12 11.2 0.1 1.2 1 0 0 1 1 1 0 Tryptophan synthase alpha chain GATase PF00117.28 gi|386002618|ref|YP_005920917.1| - 9.9e-22 77.6 0.0 1.2e-21 77.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|386002618|ref|YP_005920917.1| - 3.7e-08 33.4 0.0 6.7e-08 32.6 0.0 1.3 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|386002618|ref|YP_005920917.1| - 2.2e-06 27.4 0.0 2.7e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|386002618|ref|YP_005920917.1| - 1.4e-05 25.0 0.3 0.0023 17.7 0.1 2.2 2 0 0 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|386002618|ref|YP_005920917.1| - 0.00012 21.9 0.0 0.00022 21.1 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_5 PF13507.6 gi|386002618|ref|YP_005920917.1| - 0.22 10.6 0.0 0.43 9.6 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Fer4_7 PF12838.7 gi|386002619|ref|YP_005920918.1| - 2.9e-08 34.1 13.0 0.0015 19.1 2.1 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386002619|ref|YP_005920918.1| - 5.3e-08 32.8 8.4 5.3e-08 32.8 8.4 2.5 1 1 2 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386002619|ref|YP_005920918.1| - 6.2e-07 29.0 6.2 2.7e-05 23.8 1.0 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|386002619|ref|YP_005920918.1| - 1.5e-06 28.2 8.7 1.5e-06 28.2 8.7 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386002619|ref|YP_005920918.1| - 1.9e-06 28.7 10.9 0.0071 17.3 2.7 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|386002619|ref|YP_005920918.1| - 7e-05 22.9 8.7 7e-05 22.9 8.7 2.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002619|ref|YP_005920918.1| - 0.00027 20.9 21.1 0.00035 20.5 1.1 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386002619|ref|YP_005920918.1| - 0.00034 20.5 1.2 0.00034 20.5 1.2 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain zf-C2HC_2 PF13913.6 gi|386002619|ref|YP_005920918.1| - 0.013 15.4 0.0 0.013 15.4 0.0 3.0 3 0 0 3 3 3 0 zinc-finger of a C2HC-type zf-C2H2_11 PF16622.5 gi|386002619|ref|YP_005920918.1| - 0.016 15.0 0.1 0.016 15.0 0.1 2.5 3 0 0 3 3 3 0 zinc-finger C2H2-type Fer4_13 PF13370.6 gi|386002619|ref|YP_005920918.1| - 0.14 12.7 1.2 0.14 12.7 1.2 3.1 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|386002619|ref|YP_005920918.1| - 0.65 10.6 22.3 0.2 12.2 2.0 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain zf-C2H2_4 PF13894.6 gi|386002619|ref|YP_005920918.1| - 1.9 9.5 0.0 1.9 9.5 0.0 3.7 4 0 0 4 4 4 0 C2H2-type zinc finger Fer4_8 PF13183.6 gi|386002619|ref|YP_005920918.1| - 4.4 7.8 21.5 11 6.6 13.1 3.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386002619|ref|YP_005920918.1| - 4.7 7.8 22.3 0.91 10.1 3.1 3.4 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002620|ref|YP_005920919.1| - 4.7e-13 48.6 31.0 4.7e-06 26.4 1.1 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.27 gi|386002620|ref|YP_005920919.1| - 1.5e-10 40.4 35.3 7.6e-08 31.9 1.3 5.6 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386002620|ref|YP_005920919.1| - 1.6e-10 41.4 28.6 3.2e-05 24.4 10.6 3.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|386002620|ref|YP_005920919.1| - 5.3e-10 39.3 10.7 5.3e-10 39.3 10.7 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386002620|ref|YP_005920919.1| - 2.6e-08 33.5 34.1 1.2e-05 25.1 1.5 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|386002620|ref|YP_005920919.1| - 7.5e-08 32.4 27.5 0.0025 17.9 9.1 3.3 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386002620|ref|YP_005920919.1| - 5.1e-06 27.0 42.4 0.0078 17.1 4.7 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386002620|ref|YP_005920919.1| - 1.8e-05 24.8 26.3 0.00045 20.3 8.2 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386002620|ref|YP_005920919.1| - 3.1e-05 24.0 32.6 0.013 15.6 12.4 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386002620|ref|YP_005920919.1| - 8.8e-05 22.7 35.4 0.0069 16.8 3.1 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|386002620|ref|YP_005920919.1| - 0.00082 19.9 28.0 0.012 16.1 1.4 4.3 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386002620|ref|YP_005920919.1| - 0.0063 17.4 30.3 0.085 13.8 1.6 4.6 2 1 3 5 5 5 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|386002620|ref|YP_005920919.1| - 0.011 16.2 32.5 0.48 10.9 23.2 4.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|386002620|ref|YP_005920919.1| - 0.095 13.6 1.4 0.095 13.6 1.4 3.7 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386002620|ref|YP_005920919.1| - 0.16 12.5 20.1 0.26 11.9 3.2 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|386002620|ref|YP_005920919.1| - 2.2 9.1 23.5 9.2 7.1 7.1 3.2 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|386002620|ref|YP_005920919.1| - 8.8 6.6 17.8 7.3 6.8 0.3 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|386002621|ref|YP_005920920.1| - 2.3e-88 297.1 0.0 2.7e-88 296.8 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|386002621|ref|YP_005920920.1| - 1.1e-27 96.2 0.0 3.2e-27 94.8 0.0 1.8 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|386002621|ref|YP_005920920.1| - 6.9e-15 54.8 0.2 1.5e-14 53.7 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain GXGXG PF01493.19 gi|386002622|ref|YP_005920921.1| - 5.8e-34 117.4 5.4 7.8e-34 116.9 5.4 1.1 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.17 gi|386002623|ref|YP_005920922.1| - 7.9e-139 462.9 0.0 7.9e-139 462.9 0.0 1.4 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|386002623|ref|YP_005920922.1| - 3.7e-16 59.4 0.0 9.4e-09 35.2 0.0 2.2 2 0 0 2 2 2 2 Glutamate synthase central domain IMPDH PF00478.25 gi|386002623|ref|YP_005920922.1| - 5.5e-09 35.5 6.2 7e-08 31.8 3.7 2.6 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|386002623|ref|YP_005920922.1| - 4.3e-08 32.6 5.2 8.6e-08 31.6 2.6 2.4 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Fer4_9 PF13187.6 gi|386002623|ref|YP_005920922.1| - 1.5e-06 28.2 19.9 2e-06 27.9 11.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386002623|ref|YP_005920922.1| - 2e-06 27.8 14.6 0.00042 20.4 0.5 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain NMO PF03060.15 gi|386002623|ref|YP_005920922.1| - 8.9e-05 22.0 1.5 0.00018 21.0 1.5 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_21 PF14697.6 gi|386002623|ref|YP_005920922.1| - 0.00012 22.1 8.5 0.00012 22.1 8.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386002623|ref|YP_005920922.1| - 0.00016 22.2 18.3 0.00051 20.6 11.7 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386002623|ref|YP_005920922.1| - 0.00025 20.7 2.3 0.00025 20.7 2.3 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain DHO_dh PF01180.21 gi|386002623|ref|YP_005920922.1| - 0.0004 19.7 0.1 0.0041 16.4 0.2 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Fer4_16 PF13484.6 gi|386002623|ref|YP_005920922.1| - 0.00045 21.1 0.4 0.00045 21.1 0.4 3.5 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain His_biosynth PF00977.21 gi|386002623|ref|YP_005920922.1| - 0.022 14.2 0.1 0.053 13.0 0.1 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein Fer4_4 PF12800.7 gi|386002623|ref|YP_005920922.1| - 0.028 14.9 2.6 0.028 14.9 2.6 3.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386002623|ref|YP_005920922.1| - 0.09 12.9 22.9 0.076 13.1 3.1 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain zf_PR_Knuckle PF18445.1 gi|386002623|ref|YP_005920922.1| - 0.23 11.3 1.6 0.5 10.2 1.6 1.5 1 0 0 1 1 1 0 PR zinc knuckle motif Fer4_2 PF12797.7 gi|386002623|ref|YP_005920922.1| - 8.5 6.7 24.5 0.21 11.8 2.3 3.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|386002623|ref|YP_005920922.1| - 9.3 6.8 21.6 25 5.4 13.9 3.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain GATase_2 PF00310.21 gi|386002624|ref|YP_005920923.1| - 2.4e-16 59.5 0.0 3.8e-12 45.6 0.0 2.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|386002624|ref|YP_005920923.1| - 2.4e-08 34.3 0.0 4.6e-07 30.1 0.0 2.4 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|386002624|ref|YP_005920923.1| - 6.4e-06 26.1 0.0 0.011 15.6 0.0 2.4 2 0 0 2 2 2 2 Glutamine amidotransferase domain HSDR_N PF04313.14 gi|386002626|ref|YP_005920925.1| - 1.3e-14 54.6 0.0 8.7e-11 42.1 0.0 3.0 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|386002626|ref|YP_005920925.1| - 3.2e-10 40.0 0.2 2.4e-09 37.2 0.0 2.5 3 0 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) SeqA PF03925.13 gi|386002626|ref|YP_005920925.1| - 0.00047 20.1 0.2 0.004 17.1 0.0 2.5 3 0 0 3 3 3 1 SeqA protein C-terminal domain DUF2855 PF11017.8 gi|386002626|ref|YP_005920925.1| - 0.19 11.5 0.1 0.27 11.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) DUF772 PF05598.11 gi|386002627|ref|YP_005920926.1| - 6.2e-22 77.4 0.1 1.5e-21 76.2 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|386002627|ref|YP_005920926.1| - 2.1e-14 53.7 0.4 5.3e-14 52.4 0.4 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|386002627|ref|YP_005920926.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease P-II PF00543.22 gi|386002629|ref|YP_005920928.1| - 2.5e-36 124.3 0.1 2.8e-36 124.2 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|386002630|ref|YP_005920929.1| - 4e-115 384.7 39.8 5.1e-115 384.4 39.8 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family Gln-synt_C PF00120.24 gi|386002631|ref|YP_005920930.1| - 9.6e-128 426.0 0.0 1.1e-127 425.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|386002631|ref|YP_005920930.1| - 1e-31 108.5 0.0 1.5e-30 104.7 0.0 2.6 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|386002631|ref|YP_005920930.1| - 0.1 12.5 0.0 0.34 10.8 0.0 1.9 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain GTP_EFTU PF00009.27 gi|386002632|ref|YP_005920931.1| - 1.8e-33 115.7 0.0 5.7e-32 110.8 0.0 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|386002632|ref|YP_005920931.1| - 1.4e-29 101.8 5.5 1.4e-29 101.8 5.5 2.8 3 1 0 3 3 3 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|386002632|ref|YP_005920931.1| - 7e-21 74.3 1.8 1.1e-20 73.7 0.1 2.3 3 0 0 3 3 3 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|386002632|ref|YP_005920931.1| - 1.4e-09 38.2 0.0 1.4e-09 38.2 0.0 3.5 2 1 1 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|386002632|ref|YP_005920931.1| - 1.6e-06 28.1 0.0 5.2e-06 26.5 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|386002632|ref|YP_005920931.1| - 0.063 13.3 0.0 3 7.9 0.0 3.0 3 0 0 3 3 3 0 Dynamin family NDK PF00334.19 gi|386002633|ref|YP_005920932.1| - 5.4e-55 185.1 0.0 6.1e-55 184.9 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|386002634|ref|YP_005920933.1| - 7.8e-18 64.5 1.3 8.4e-18 64.4 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|386002634|ref|YP_005920933.1| - 7.1e-06 25.9 2.2 9.6e-06 25.5 2.2 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|386002634|ref|YP_005920933.1| - 0.0029 17.7 1.9 0.0038 17.3 1.9 1.1 1 0 0 1 1 1 1 YHS domain zf-FLZ PF04570.14 gi|386002634|ref|YP_005920933.1| - 0.0054 16.2 4.1 0.0099 15.3 4.1 1.4 1 1 0 1 1 1 1 zinc-finger of the FCS-type, C2-C2 SerH PF06873.11 gi|386002634|ref|YP_005920933.1| - 0.073 11.9 0.1 0.076 11.8 0.1 1.0 1 0 0 1 1 1 0 Cell surface immobilisation antigen SerH VATC PF18716.1 gi|386002634|ref|YP_005920933.1| - 0.45 10.4 6.5 1 9.3 6.5 1.5 1 1 0 1 1 1 0 Vms1-associating treble clef domain Ribosomal_S28e PF01200.18 gi|386002635|ref|YP_005920934.1| - 5.9e-31 106.3 0.2 6.5e-31 106.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|386002636|ref|YP_005920935.1| - 9.2e-26 89.4 0.3 1.1e-25 89.2 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|386002636|ref|YP_005920935.1| - 0.00029 20.7 0.0 0.0004 20.2 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain DUF4346 PF14251.6 gi|386002638|ref|YP_005920937.1| - 3.3e-09 36.8 0.0 9e-09 35.4 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|386002638|ref|YP_005920937.1| - 1e-08 35.2 0.4 4.1e-08 33.2 0.1 2.1 2 0 0 2 2 2 1 Pterin binding enzyme DUF2299 PF10061.9 gi|386002641|ref|YP_005920940.1| - 2.8e-38 130.8 0.0 3.2e-38 130.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) GATase_7 PF13537.6 gi|386002642|ref|YP_005920941.1| - 1.6e-22 79.7 0.0 2.4e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|386002642|ref|YP_005920941.1| - 8.9e-22 77.7 0.0 2e-21 76.6 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|386002642|ref|YP_005920941.1| - 3.2e-08 32.8 0.0 1.2e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|386002642|ref|YP_005920941.1| - 1.6e-05 24.4 0.1 3.4e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_2 PF00310.21 gi|386002642|ref|YP_005920941.1| - 0.0069 15.1 0.3 2.3 6.8 0.1 2.2 2 0 0 2 2 2 2 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.19 gi|386002643|ref|YP_005920942.1| - 3.7e-23 81.4 12.6 4.1e-23 81.3 12.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e HypA PF01155.19 gi|386002643|ref|YP_005920942.1| - 0.033 14.2 0.5 0.035 14.1 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MraY_sig1 PF10555.9 gi|386002643|ref|YP_005920942.1| - 0.25 11.0 1.3 0.4 10.3 1.3 1.4 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 zf-ribbon_3 PF13248.6 gi|386002643|ref|YP_005920942.1| - 0.52 9.8 4.3 2.3 7.7 4.1 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zn-ribbon_14 PF16503.5 gi|386002643|ref|YP_005920942.1| - 0.6 9.7 4.5 2.5 7.7 0.3 2.4 2 0 0 2 2 2 0 Zinc-ribbon YhfH PF14149.6 gi|386002643|ref|YP_005920942.1| - 3.4 7.7 6.5 4.8 7.3 0.5 2.2 1 1 1 2 2 2 0 YhfH-like protein LSM PF01423.22 gi|386002644|ref|YP_005920943.1| - 8.5e-24 83.0 0.2 9.2e-24 82.9 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|386002644|ref|YP_005920943.1| - 0.0022 18.1 0.0 0.0023 18.0 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain PUA PF01472.20 gi|386002645|ref|YP_005920944.1| - 6.6e-18 64.4 0.6 9.8e-18 63.9 0.6 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|386002645|ref|YP_005920944.1| - 0.036 14.4 0.0 0.07 13.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|386002645|ref|YP_005920944.1| - 0.039 14.2 0.0 0.056 13.7 0.0 1.2 1 0 0 1 1 1 0 UPF0113 PUA domain Pre-PUA PF17832.1 gi|386002645|ref|YP_005920944.1| - 0.25 12.0 0.1 0.97 10.2 0.1 1.8 1 1 0 1 1 1 0 Pre-PUA-like domain DUF4013 PF13197.6 gi|386002646|ref|YP_005920945.1| - 0.0078 16.1 15.1 0.0078 16.1 15.1 3.0 1 1 2 3 3 3 1 Protein of unknown function (DUF4013) SUR7 PF06687.12 gi|386002646|ref|YP_005920945.1| - 0.035 13.7 19.7 0.12 12.0 8.9 2.6 1 1 1 2 2 2 0 SUR7/PalI family SHR3_chaperone PF08229.11 gi|386002646|ref|YP_005920945.1| - 0.77 8.7 3.9 1.4 7.8 1.4 2.3 1 1 1 2 2 2 0 ER membrane protein SH3 DUF3169 PF11368.8 gi|386002646|ref|YP_005920945.1| - 0.84 9.1 0.0 0.84 9.1 0.0 3.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3169) DHHC PF01529.20 gi|386002646|ref|YP_005920945.1| - 3.8 7.6 12.3 10 6.2 1.7 3.2 3 0 0 3 3 3 0 DHHC palmitoyltransferase Bee_toxin PF17454.2 gi|386002647|ref|YP_005920946.1| - 0.23 11.5 0.5 0.23 11.5 0.5 1.9 1 1 1 2 2 2 0 Honey bee toxin TrkA_C PF02080.21 gi|386002648|ref|YP_005920947.1| - 1e-27 95.7 0.1 3.5e-13 49.2 0.0 2.4 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|386002648|ref|YP_005920947.1| - 2.1e-15 57.0 16.5 1.9e-08 34.7 5.2 2.3 2 0 0 2 2 2 2 PhoU domain Cupin_6 PF12852.7 gi|386002648|ref|YP_005920947.1| - 0.00012 21.9 0.0 0.34 10.6 0.0 2.4 2 0 0 2 2 2 2 Cupin Dicistro_VP4 PF11492.8 gi|386002648|ref|YP_005920947.1| - 0.077 13.0 1.2 0.86 9.6 0.4 2.4 2 0 0 2 2 2 0 Cricket paralysis virus, VP4 Adenosine_kin PF04008.14 gi|386002649|ref|YP_005920948.1| - 2e-72 242.0 0.0 2.2e-72 241.9 0.0 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Amidohydro_1 PF01979.20 gi|386002650|ref|YP_005920949.1| - 1.5e-24 86.9 0.0 2.1e-24 86.5 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|386002650|ref|YP_005920949.1| - 1.8e-16 60.7 0.5 6.4e-10 39.1 0.1 2.6 2 1 0 2 2 2 2 Amidohydrolase family HSP20 PF00011.21 gi|386002651|ref|YP_005920950.1| - 2.3e-12 47.0 0.0 3e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|386002651|ref|YP_005920950.1| - 2.5e-08 33.4 0.1 3.7e-08 32.8 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|386002651|ref|YP_005920950.1| - 0.08 14.0 0.0 0.12 13.5 0.0 1.2 1 0 0 1 1 1 0 CS domain DUF4139 PF13598.6 gi|386002652|ref|YP_005920951.1| - 5.1e-13 49.2 0.0 9.9e-13 48.3 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4139) DUF4140 PF13600.6 gi|386002652|ref|YP_005920951.1| - 1.1e-06 29.0 1.5 2.5e-06 27.8 0.3 2.2 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) AIRC PF00731.20 gi|386002652|ref|YP_005920951.1| - 0.082 12.5 0.1 0.2 11.2 0.1 1.7 1 0 0 1 1 1 0 AIR carboxylase DUF756 PF05506.12 gi|386002652|ref|YP_005920951.1| - 0.24 12.3 0.7 16 6.5 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF756) tRNA-synt_1d PF00750.19 gi|386002653|ref|YP_005920952.1| - 5.3e-35 121.0 0.0 6.8e-35 120.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|386002653|ref|YP_005920952.1| - 8.1e-30 103.4 0.0 2.8e-29 101.7 0.0 1.9 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|386002653|ref|YP_005920952.1| - 1.8e-08 34.8 0.0 4.3e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|386002653|ref|YP_005920952.1| - 8.2e-07 28.3 0.0 0.0045 16.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|386002653|ref|YP_005920952.1| - 0.00025 19.9 0.0 0.11 11.2 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|386002653|ref|YP_005920952.1| - 0.034 12.4 0.0 0.049 11.9 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) Trp_syntA PF00290.20 gi|386002655|ref|YP_005920954.1| - 1.5e-83 279.6 0.0 1.8e-83 279.4 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|386002655|ref|YP_005920954.1| - 2.4e-05 23.9 0.0 3.8e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|386002655|ref|YP_005920954.1| - 0.00014 21.4 0.1 0.0029 17.1 0.1 2.1 2 0 0 2 2 2 1 PcrB family NanE PF04131.14 gi|386002655|ref|YP_005920954.1| - 0.0097 15.1 0.1 0.02 14.1 0.1 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|386002655|ref|YP_005920954.1| - 0.056 12.7 0.2 0.056 12.7 0.2 1.7 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|386002655|ref|YP_005920954.1| - 0.081 12.1 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase ALF PF03752.13 gi|386002655|ref|YP_005920954.1| - 0.4 10.7 0.2 0.4 10.7 0.2 2.8 3 0 0 3 3 3 0 Short repeats of unknown function PALP PF00291.25 gi|386002656|ref|YP_005920955.1| - 2e-36 126.0 2.7 2.5e-36 125.6 2.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.21 gi|386002657|ref|YP_005920956.1| - 2.5e-52 177.6 0.0 3.2e-52 177.2 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 gi|386002657|ref|YP_005920956.1| - 0.014 15.2 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.18 gi|386002657|ref|YP_005920956.1| - 0.11 11.5 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase DHO_dh PF01180.21 gi|386002657|ref|YP_005920956.1| - 0.15 11.2 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|386002657|ref|YP_005920956.1| - 0.17 11.4 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein GATase PF00117.28 gi|386002658|ref|YP_005920957.1| - 1.2e-29 103.4 0.0 1.4e-29 103.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|386002658|ref|YP_005920957.1| - 1.6e-14 54.2 0.3 8.2e-13 48.6 0.3 2.0 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|386002659|ref|YP_005920958.1| - 2.4e-95 319.0 0.0 1.3e-91 306.8 0.0 3.0 3 0 0 3 3 3 2 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|386002659|ref|YP_005920958.1| - 4.1e-28 98.4 0.0 4.4e-26 91.8 0.0 2.9 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|386002660|ref|YP_005920959.1| - 1.7e-31 109.5 0.0 1.9e-31 109.3 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMO PF03060.15 gi|386002660|ref|YP_005920959.1| - 0.017 14.5 2.7 0.017 14.5 2.7 1.8 1 1 0 2 2 2 0 Nitronate monooxygenase TMP-TENI PF02581.17 gi|386002660|ref|YP_005920959.1| - 0.06 12.7 0.1 0.13 11.6 0.1 1.7 1 1 0 1 1 1 0 Thiamine monophosphate synthase DUF3606 PF12244.8 gi|386002660|ref|YP_005920959.1| - 0.11 12.4 0.7 0.29 11.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3606) UPF0180 PF03698.13 gi|386002660|ref|YP_005920959.1| - 0.18 12.0 0.0 0.4 10.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) DeoC PF01791.9 gi|386002660|ref|YP_005920959.1| - 0.23 11.0 4.9 1.6 8.3 1.2 2.7 1 1 1 2 2 2 0 DeoC/LacD family aldolase Glycos_transf_3 PF00591.21 gi|386002661|ref|YP_005920960.1| - 9.7e-90 300.6 0.1 1.5e-89 299.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|386002661|ref|YP_005920960.1| - 3.4e-15 55.6 0.5 6.7e-15 54.7 0.5 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain GDE_C PF06202.14 gi|386002663|ref|YP_005920962.1| - 2.9e-111 372.1 0.0 3.8e-111 371.7 0.0 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|386002663|ref|YP_005920962.1| - 7.2e-67 225.0 0.0 9.7e-67 224.6 0.0 1.1 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Glyco_hydro_63 PF03200.16 gi|386002663|ref|YP_005920962.1| - 0.063 12.0 0.0 0.092 11.5 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 63 C-terminal domain Glyco_hydro_57 PF03065.15 gi|386002664|ref|YP_005920963.1| - 3.6e-53 180.9 0.0 4.8e-53 180.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|386002664|ref|YP_005920963.1| - 0.065 13.1 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide deacetylase Acetyltransf_9 PF13527.7 gi|386002665|ref|YP_005920964.1| - 9.9e-15 54.8 0.1 1.5e-14 54.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|386002665|ref|YP_005920964.1| - 0.0037 17.2 0.0 0.033 14.1 0.0 2.2 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_1 PF00583.25 gi|386002665|ref|YP_005920964.1| - 0.0078 16.4 0.3 0.015 15.5 0.3 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family ATPase PF06745.13 gi|386002666|ref|YP_005920965.1| - 1.4e-47 162.0 0.2 1.7e-47 161.7 0.2 1.0 1 0 0 1 1 1 1 KaiC MEDS PF14417.6 gi|386002666|ref|YP_005920965.1| - 4.3e-05 23.4 0.0 6.7e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_25 PF13481.6 gi|386002666|ref|YP_005920965.1| - 5.6e-05 22.8 0.0 0.00012 21.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|386002666|ref|YP_005920965.1| - 0.0036 16.7 0.0 0.0067 15.8 0.0 1.5 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|386002666|ref|YP_005920965.1| - 0.012 14.8 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 gi|386002666|ref|YP_005920965.1| - 0.029 13.6 0.1 0.053 12.8 0.1 1.3 1 0 0 1 1 1 0 Rad51 PhoH PF02562.16 gi|386002666|ref|YP_005920965.1| - 0.033 13.7 0.5 0.36 10.2 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_14 PF13173.6 gi|386002666|ref|YP_005920965.1| - 0.046 13.8 0.0 0.084 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|386002666|ref|YP_005920965.1| - 0.054 13.2 0.0 0.078 12.7 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|386002666|ref|YP_005920965.1| - 0.055 13.2 0.1 0.094 12.4 0.1 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain DAP3 PF10236.9 gi|386002666|ref|YP_005920965.1| - 0.1 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_22 PF13401.6 gi|386002666|ref|YP_005920965.1| - 0.21 11.8 0.4 0.39 11.0 0.3 1.7 1 1 0 1 1 1 0 AAA domain Glycogen_syn PF05693.13 gi|386002667|ref|YP_005920966.1| - 1.3e-15 57.0 0.0 1.3e-06 27.3 0.0 2.8 2 1 0 2 2 2 2 Glycogen synthase Glyco_transf_4 PF13439.6 gi|386002667|ref|YP_005920966.1| - 0.00014 21.9 0.0 0.013 15.5 0.0 2.3 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|386002667|ref|YP_005920966.1| - 0.00093 18.8 0.0 0.002 17.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|386002667|ref|YP_005920966.1| - 0.068 13.6 0.1 0.23 11.9 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|386002668|ref|YP_005920967.1| - 3e-33 114.8 0.0 4e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|386002668|ref|YP_005920967.1| - 1.4e-22 80.5 0.1 2.5e-22 79.8 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|386002668|ref|YP_005920967.1| - 4.2e-21 75.7 0.0 1.2e-20 74.2 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|386002668|ref|YP_005920967.1| - 1.9e-19 70.6 0.0 6.2e-19 69.0 0.0 1.9 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|386002668|ref|YP_005920967.1| - 1.3e-09 38.1 0.0 4.7e-08 33.0 0.0 2.6 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|386002668|ref|YP_005920967.1| - 1.7e-06 28.3 0.0 3.9e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|386002668|ref|YP_005920967.1| - 0.00096 17.9 0.0 0.0045 15.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase family 20 Glyco_trans_4_2 PF13477.6 gi|386002668|ref|YP_005920967.1| - 0.0071 16.4 0.0 0.024 14.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycogen_syn PF05693.13 gi|386002668|ref|YP_005920967.1| - 0.14 10.7 0.0 0.21 10.1 0.0 1.2 1 0 0 1 1 1 0 Glycogen synthase DUF2325 PF10087.9 gi|386002668|ref|YP_005920967.1| - 0.17 12.0 0.0 4.5 7.4 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) DUF4921 PF16268.5 gi|386002669|ref|YP_005920968.1| - 7.6e-14 51.4 0.0 1.7e-12 46.9 0.0 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4921) GalP_UDP_transf PF01087.22 gi|386002669|ref|YP_005920968.1| - 7.4e-13 49.3 0.0 4.4e-12 46.8 0.0 2.0 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain DUF4931 PF16285.5 gi|386002669|ref|YP_005920968.1| - 1.2e-05 24.8 0.0 8.7e-05 21.9 0.0 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4931) GalP_UDP_tr_C PF02744.17 gi|386002669|ref|YP_005920968.1| - 0.00026 20.8 0.0 0.00035 20.3 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.23 gi|386002669|ref|YP_005920968.1| - 0.11 13.2 0.0 1.7 9.4 0.0 2.1 2 0 0 2 2 2 0 HIT domain zf-RING_7 PF02591.15 gi|386002669|ref|YP_005920968.1| - 0.35 11.1 2.2 0.37 11.0 0.1 2.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain Glycos_transf_1 PF00534.20 gi|386002670|ref|YP_005920969.1| - 2.3e-32 111.9 0.0 3.5e-32 111.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|386002670|ref|YP_005920969.1| - 1.1e-30 106.8 0.4 2.1e-30 106.0 0.4 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|386002670|ref|YP_005920969.1| - 7.7e-26 91.1 0.0 1.2e-25 90.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|386002670|ref|YP_005920969.1| - 6.2e-24 85.3 0.0 1e-23 84.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|386002670|ref|YP_005920969.1| - 3.7e-15 56.3 1.0 1.3e-06 28.3 0.4 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|386002670|ref|YP_005920969.1| - 5.9e-10 39.3 0.0 8.5e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|386002670|ref|YP_005920969.1| - 2.5e-09 37.4 0.0 4.8e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Poxvirus_B22R_N PF13169.6 gi|386002670|ref|YP_005920969.1| - 0.22 12.0 0.0 1 9.9 0.0 2.0 2 0 0 2 2 2 0 Poxvirus B22R protein N-terminal bPH_2 PF03703.14 gi|386002671|ref|YP_005920970.1| - 1.4e-07 31.6 0.1 2.5e-07 30.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial PH domain AAA PF00004.29 gi|386002672|ref|YP_005920971.1| - 6.6e-50 169.0 0.0 1e-49 168.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|386002672|ref|YP_005920971.1| - 1.3e-25 89.4 1.0 1.2e-24 86.3 0.1 3.0 4 0 0 4 4 3 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|386002672|ref|YP_005920971.1| - 1.2e-13 50.6 0.3 3e-13 49.3 0.2 1.8 1 1 0 1 1 1 1 AAA+ lid domain CDC48_2 PF02933.17 gi|386002672|ref|YP_005920971.1| - 1.5e-12 47.1 0.0 5.4e-12 45.3 0.0 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|386002672|ref|YP_005920971.1| - 1.5e-09 37.8 0.0 3.2e-09 36.7 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|386002672|ref|YP_005920971.1| - 5.5e-08 33.1 0.0 9.6e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|386002672|ref|YP_005920971.1| - 1.6e-07 31.4 0.1 1.1e-06 28.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|386002672|ref|YP_005920971.1| - 4.8e-07 30.3 0.1 1.5e-06 28.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|386002672|ref|YP_005920971.1| - 2.3e-06 27.9 0.0 4.2e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|386002672|ref|YP_005920971.1| - 1.8e-05 25.0 0.1 0.0007 19.9 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|386002672|ref|YP_005920971.1| - 9.9e-05 22.4 0.0 0.00016 21.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|386002672|ref|YP_005920971.1| - 0.00018 20.8 0.0 0.0004 19.7 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_28 PF13521.6 gi|386002672|ref|YP_005920971.1| - 0.00081 19.7 0.0 0.0016 18.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|386002672|ref|YP_005920971.1| - 0.0019 17.6 0.2 0.88 8.9 0.0 2.6 1 1 1 2 2 2 1 KaiC AAA_18 PF13238.6 gi|386002672|ref|YP_005920971.1| - 0.0022 18.5 0.0 0.0048 17.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|386002672|ref|YP_005920971.1| - 0.003 17.2 1.0 0.57 9.7 0.1 2.5 1 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|386002672|ref|YP_005920971.1| - 0.0032 17.2 0.0 0.0068 16.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|386002672|ref|YP_005920971.1| - 0.0039 17.6 0.0 0.0067 16.8 0.0 1.4 1 0 0 1 1 1 1 RNA helicase Mg_chelatase PF01078.21 gi|386002672|ref|YP_005920971.1| - 0.014 14.8 0.1 0.026 13.9 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.6 gi|386002672|ref|YP_005920971.1| - 0.016 15.0 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|386002672|ref|YP_005920971.1| - 0.02 14.6 0.0 0.12 12.0 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain TsaE PF02367.17 gi|386002672|ref|YP_005920971.1| - 0.021 14.9 0.0 0.054 13.5 0.0 1.6 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|386002672|ref|YP_005920971.1| - 0.022 14.6 0.0 0.051 13.4 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.18 gi|386002672|ref|YP_005920971.1| - 0.023 14.5 0.0 0.078 12.8 0.0 1.8 1 1 1 2 2 2 0 Bacterial dnaA protein AAA_7 PF12775.7 gi|386002672|ref|YP_005920971.1| - 0.033 13.7 0.0 0.061 12.8 0.0 1.4 1 1 0 1 1 1 0 P-loop containing dynein motor region PhoH PF02562.16 gi|386002672|ref|YP_005920971.1| - 0.036 13.5 0.0 0.22 11.0 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein NACHT PF05729.12 gi|386002672|ref|YP_005920971.1| - 0.036 14.0 0.0 0.091 12.7 0.0 1.7 1 1 0 1 1 1 0 NACHT domain DUF2075 PF09848.9 gi|386002672|ref|YP_005920971.1| - 0.088 12.0 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|386002672|ref|YP_005920971.1| - 0.1 11.9 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Sigma54_activ_2 PF14532.6 gi|386002672|ref|YP_005920971.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|386002672|ref|YP_005920971.1| - 0.17 11.6 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|386002673|ref|YP_005920972.1| - 3.3e-24 85.8 0.0 5e-24 85.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|386002673|ref|YP_005920972.1| - 1.5e-14 53.5 0.1 3e-14 52.6 0.1 1.5 1 0 0 1 1 1 1 AAA+ lid domain PapB PF03333.13 gi|386002673|ref|YP_005920972.1| - 0.1 12.7 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Adhesin biosynthesis transcription regulatory protein Vps4_C PF09336.10 gi|386002673|ref|YP_005920972.1| - 0.18 11.8 0.0 0.39 10.8 0.0 1.5 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain AAA_lid_3 PF17862.1 gi|386002674|ref|YP_005920973.1| - 8e-14 51.2 0.3 1.3e-13 50.5 0.3 1.4 1 0 0 1 1 1 1 AAA+ lid domain AAA PF00004.29 gi|386002674|ref|YP_005920973.1| - 4.2e-09 36.9 0.0 7.4e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Vps4_C PF09336.10 gi|386002674|ref|YP_005920973.1| - 0.12 12.4 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain DUF772 PF05598.11 gi|386002675|ref|YP_005920974.1| - 6.2e-22 77.4 0.1 1.5e-21 76.2 0.1 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|386002675|ref|YP_005920974.1| - 2.1e-14 53.7 0.4 5.3e-14 52.4 0.4 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|386002675|ref|YP_005920974.1| - 0.00018 21.2 0.0 0.00039 20.1 0.0 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease Phage_integrase PF00589.22 gi|386002676|ref|YP_005920975.1| - 3.1e-23 82.4 0.0 3.8e-23 82.1 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.7 gi|386002676|ref|YP_005920975.1| - 0.00025 21.2 0.0 0.00046 20.3 0.0 1.4 1 1 0 1 1 1 1 Integrase ZnuA PF01297.17 gi|386002678|ref|YP_005920977.1| - 9.4e-68 228.4 0.0 1.1e-67 228.1 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|386002679|ref|YP_005920978.1| - 7.8e-29 100.9 0.0 1.2e-28 100.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386002679|ref|YP_005920978.1| - 5.5e-13 49.4 1.5 1.4e-05 25.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|386002679|ref|YP_005920978.1| - 3.3e-07 30.0 0.0 5.6e-07 29.2 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|386002679|ref|YP_005920978.1| - 0.00099 18.8 0.0 0.0021 17.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|386002679|ref|YP_005920978.1| - 0.0026 18.3 0.1 0.0049 17.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|386002679|ref|YP_005920978.1| - 0.0057 16.4 0.1 0.0099 15.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|386002679|ref|YP_005920978.1| - 0.02 14.7 0.0 0.048 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|386002679|ref|YP_005920978.1| - 0.025 14.3 0.1 3.6 7.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|386002679|ref|YP_005920978.1| - 0.031 14.5 0.3 0.94 9.8 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|386002679|ref|YP_005920978.1| - 0.051 13.2 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|386002679|ref|YP_005920978.1| - 0.062 12.9 0.2 0.13 11.9 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|386002679|ref|YP_005920978.1| - 0.08 13.4 0.1 0.36 11.3 0.0 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|386002679|ref|YP_005920978.1| - 0.094 13.1 0.1 0.13 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|386002679|ref|YP_005920978.1| - 0.11 12.4 0.0 0.27 11.2 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 gi|386002679|ref|YP_005920978.1| - 0.15 12.3 0.0 0.35 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|386002679|ref|YP_005920978.1| - 0.15 11.0 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF460 PF04312.13 gi|386002679|ref|YP_005920978.1| - 0.16 11.7 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF460) MeaB PF03308.16 gi|386002679|ref|YP_005920978.1| - 0.17 10.9 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PIF1 PF05970.14 gi|386002679|ref|YP_005920978.1| - 0.18 11.0 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_22 PF13401.6 gi|386002679|ref|YP_005920978.1| - 0.2 12.0 0.3 0.67 10.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain ABC-3 PF00950.17 gi|386002680|ref|YP_005920979.1| - 7e-76 255.1 30.0 7.9e-76 255.0 30.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|386002680|ref|YP_005920979.1| - 2.1e-08 33.6 34.2 3.9e-08 32.7 34.2 1.5 1 1 0 1 1 1 1 FecCD transport family NPCBM_assoc PF10633.9 gi|386002681|ref|YP_005920980.1| - 9.4e-06 25.8 0.1 0.0039 17.4 0.1 3.2 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|386002681|ref|YP_005920980.1| - 0.063 13.5 0.0 1 9.7 0.0 2.2 2 0 0 2 2 2 0 CARDB ABC_tran PF00005.27 gi|386002682|ref|YP_005920981.1| - 2.6e-28 99.2 0.0 3.8e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386002682|ref|YP_005920981.1| - 1.2e-12 48.3 0.4 1.4e-05 25.1 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|386002682|ref|YP_005920981.1| - 8e-06 26.5 0.0 1.6e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|386002682|ref|YP_005920981.1| - 0.00087 19.8 0.1 0.002 18.7 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|386002682|ref|YP_005920981.1| - 0.0012 18.7 0.1 1.3 8.7 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|386002682|ref|YP_005920981.1| - 0.0021 17.7 0.0 0.0039 16.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|386002682|ref|YP_005920981.1| - 0.0069 15.1 0.0 0.3 9.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|386002682|ref|YP_005920981.1| - 0.02 14.6 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|386002682|ref|YP_005920981.1| - 0.029 14.4 0.0 0.36 10.8 0.0 2.4 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|386002682|ref|YP_005920981.1| - 0.029 14.0 0.1 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MukB PF04310.12 gi|386002682|ref|YP_005920981.1| - 0.031 14.1 0.0 0.048 13.5 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal MeaB PF03308.16 gi|386002682|ref|YP_005920981.1| - 0.12 11.4 0.0 0.23 10.4 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|386002682|ref|YP_005920981.1| - 0.15 12.1 0.0 4.7 7.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|386002682|ref|YP_005920981.1| - 0.18 11.5 0.0 0.35 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|386002682|ref|YP_005920981.1| - 0.19 11.1 0.0 1.5 8.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane PF01061.24 gi|386002683|ref|YP_005920982.1| - 2.1e-10 40.4 23.9 2.1e-10 40.4 23.9 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|386002683|ref|YP_005920982.1| - 0.008 15.3 31.6 0.01 15.0 31.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Pterin_bind PF00809.22 gi|386002684|ref|YP_005920983.1| - 4.1e-53 180.6 0.0 5.1e-53 180.2 0.0 1.1 1 0 0 1 1 1 1 Pterin binding enzyme F420_ligase PF01996.16 gi|386002685|ref|YP_005920984.1| - 7.3e-23 81.2 0.0 8.1e-23 81.0 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase F420_ligase PF01996.16 gi|386002686|ref|YP_005920985.1| - 7.4e-26 91.0 0.1 1.2e-25 90.3 0.1 1.4 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.23 gi|386002686|ref|YP_005920985.1| - 8.3e-15 54.5 0.3 1.5e-14 53.7 0.3 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|386002686|ref|YP_005920985.1| - 1.1e-08 35.4 0.4 1.7e-08 34.7 0.4 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|386002686|ref|YP_005920985.1| - 0.0054 16.4 1.5 0.69 9.5 0.2 2.2 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases Methyltransf_23 PF13489.6 gi|386002687|ref|YP_005920986.1| - 8.7e-06 25.7 0.0 1.3e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386002687|ref|YP_005920986.1| - 0.0021 18.7 0.0 0.003 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386002687|ref|YP_005920986.1| - 0.0043 17.7 0.0 0.0071 17.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386002687|ref|YP_005920986.1| - 0.018 14.8 0.0 0.029 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002687|ref|YP_005920986.1| - 0.058 14.1 0.0 0.1 13.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Glyco_tranf_2_5 PF13712.6 gi|386002688|ref|YP_005920987.1| - 2.6e-19 69.7 0.0 4.5e-19 69.0 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family Glycos_transf_2 PF00535.26 gi|386002688|ref|YP_005920987.1| - 0.0038 17.0 0.0 0.021 14.7 0.0 1.9 1 1 1 2 2 2 1 Glycosyl transferase family 2 Methyltransf_11 PF08241.12 gi|386002689|ref|YP_005920988.1| - 3.4e-05 24.4 0.0 0.001 19.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386002689|ref|YP_005920988.1| - 0.0079 16.9 0.1 0.014 16.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain DUF371 PF04027.13 gi|386002689|ref|YP_005920988.1| - 0.096 12.7 0.3 0.13 12.2 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF371) Glycos_transf_2 PF00535.26 gi|386002690|ref|YP_005920989.1| - 5.8e-26 91.3 0.0 7.5e-25 87.7 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|386002690|ref|YP_005920989.1| - 6.6e-19 68.7 0.0 1.1e-18 68.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Methyltransf_11 PF08241.12 gi|386002690|ref|YP_005920989.1| - 2.3e-10 41.0 0.2 8.2e-10 39.2 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386002690|ref|YP_005920989.1| - 2.4e-09 37.3 0.0 4.4e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386002690|ref|YP_005920989.1| - 2.4e-07 30.7 0.4 2.1e-06 27.6 0.0 2.5 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386002690|ref|YP_005920989.1| - 0.0001 23.0 0.3 0.00038 21.1 0.0 2.1 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002690|ref|YP_005920989.1| - 0.00038 21.1 0.1 0.0013 19.4 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386002690|ref|YP_005920989.1| - 0.00083 18.8 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Glyco_trans_2_3 PF13632.6 gi|386002690|ref|YP_005920989.1| - 0.0037 17.2 0.0 0.0063 16.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|386002690|ref|YP_005920989.1| - 0.0082 15.6 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 gi|386002690|ref|YP_005920989.1| - 0.012 15.3 0.1 0.06 13.0 0.0 2.3 2 1 0 2 2 2 0 Glycosyltransferase like family DREV PF05219.12 gi|386002690|ref|YP_005920989.1| - 0.063 12.4 0.0 0.13 11.3 0.0 1.5 1 1 0 1 1 1 0 DREV methyltransferase Glyco_tranf_2_4 PF13704.6 gi|386002690|ref|YP_005920989.1| - 0.085 13.4 0.0 0.2 12.2 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF4864 PF16156.5 gi|386002690|ref|YP_005920989.1| - 0.11 13.2 0.0 0.25 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4864) Glyco_trans_1_4 PF13692.6 gi|386002691|ref|YP_005920990.1| - 2.8e-18 66.6 0.0 4.6e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|386002691|ref|YP_005920990.1| - 6e-16 58.4 0.0 2.4e-15 56.5 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|386002692|ref|YP_005920991.1| - 1.5e-32 112.8 0.1 3.1e-32 111.7 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|386002692|ref|YP_005920991.1| - 1.7e-23 83.8 0.0 2.3e-23 83.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|386002692|ref|YP_005920991.1| - 2.9e-17 63.0 0.1 2.2e-08 33.9 0.0 2.0 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|386002692|ref|YP_005920991.1| - 0.009 15.9 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 DUF5348 PF17295.2 gi|386002692|ref|YP_005920991.1| - 0.061 13.2 0.0 0.18 11.7 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF5348) GNT-I PF03071.15 gi|386002692|ref|YP_005920991.1| - 0.11 11.3 0.0 0.18 10.5 0.0 1.3 1 0 0 1 1 1 0 GNT-I family Glycos_transf_2 PF00535.26 gi|386002693|ref|YP_005920992.1| - 4.8e-27 94.8 0.0 1.3e-26 93.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|386002693|ref|YP_005920992.1| - 1.5e-15 57.7 0.0 2.6e-15 56.9 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|386002693|ref|YP_005920992.1| - 1.6e-13 50.8 0.0 4.2e-13 49.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|386002693|ref|YP_005920992.1| - 0.00094 18.7 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|386002693|ref|YP_005920992.1| - 0.021 14.7 0.0 0.056 13.4 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Peptidase_C42 PF05533.12 gi|386002693|ref|YP_005920992.1| - 0.028 14.5 0.0 0.076 13.1 0.0 1.7 2 0 0 2 2 2 0 Beet yellows virus-type papain-like endopeptidase C42 Glyco_transf_7C PF02709.14 gi|386002693|ref|YP_005920992.1| - 0.04 13.6 0.0 0.08 12.6 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase PS_pyruv_trans PF04230.13 gi|386002694|ref|YP_005920993.1| - 3.1e-38 132.3 0.0 5.1e-38 131.6 0.0 1.3 1 1 0 1 1 1 1 Polysaccharide pyruvyl transferase FrhB_FdhB_C PF04432.13 gi|386002695|ref|YP_005920994.1| - 1.4e-27 96.5 0.0 2.1e-27 95.9 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|386002695|ref|YP_005920994.1| - 1.3e-15 57.2 0.0 3.2e-15 56.0 0.0 1.7 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.6 gi|386002695|ref|YP_005920994.1| - 4.6e-09 36.3 4.5 4.6e-09 36.3 4.5 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386002695|ref|YP_005920994.1| - 1.5e-07 30.9 2.3 1.5e-07 30.9 2.3 3.4 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386002695|ref|YP_005920994.1| - 1.9e-07 30.8 15.0 4.4e-05 23.4 1.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386002695|ref|YP_005920994.1| - 2.3e-07 31.3 9.1 3.5e-07 30.7 6.2 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386002695|ref|YP_005920994.1| - 8.2e-05 22.7 6.3 8.2e-05 22.7 6.3 2.7 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386002695|ref|YP_005920994.1| - 0.00021 21.7 3.6 0.36 11.3 0.6 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386002695|ref|YP_005920994.1| - 0.00044 20.3 15.1 0.0012 18.9 9.6 3.5 4 1 1 5 5 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386002695|ref|YP_005920994.1| - 0.0021 18.8 7.6 0.0031 18.2 1.3 2.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|386002695|ref|YP_005920994.1| - 0.0034 18.3 13.1 0.041 14.8 2.2 3.1 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|386002695|ref|YP_005920994.1| - 0.0072 16.4 1.8 0.0072 16.4 1.8 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|386002695|ref|YP_005920994.1| - 0.01 16.4 1.5 0.01 16.4 1.5 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|386002695|ref|YP_005920994.1| - 0.031 14.8 0.5 0.031 14.8 0.5 3.3 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|386002695|ref|YP_005920994.1| - 0.053 14.1 13.6 0.23 12.0 2.2 3.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|386002695|ref|YP_005920994.1| - 0.11 13.4 0.5 0.11 13.4 0.5 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain DUF3343 PF11823.8 gi|386002695|ref|YP_005920994.1| - 2.6 7.6 5.9 11 5.6 0.5 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3343) Fer4_3 PF12798.7 gi|386002695|ref|YP_005920994.1| - 7.5 7.7 28.6 0.3 12.1 4.0 3.4 4 0 0 4 4 2 0 4Fe-4S binding domain Polysacc_synt PF01943.17 gi|386002696|ref|YP_005920995.1| - 2.1e-11 43.7 27.9 2.1e-11 43.7 27.9 2.5 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Glyco_transf_4 PF13439.6 gi|386002697|ref|YP_005920996.1| - 2.9e-36 125.0 1.0 4.5e-36 124.4 1.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|386002697|ref|YP_005920996.1| - 3e-29 101.7 0.0 6.6e-29 100.6 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|386002697|ref|YP_005920996.1| - 3.7e-25 89.2 0.2 7e-25 88.3 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|386002697|ref|YP_005920996.1| - 2.8e-23 82.8 0.1 3.7e-22 79.2 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|386002697|ref|YP_005920996.1| - 3.2e-08 33.7 0.0 6.7e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|386002697|ref|YP_005920996.1| - 0.0015 18.3 1.7 1.3 8.7 0.0 2.8 2 1 1 3 3 3 2 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|386002697|ref|YP_005920996.1| - 0.022 15.2 0.3 0.13 12.6 0.3 2.4 1 1 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|386002698|ref|YP_005920997.1| - 7.9e-24 84.4 0.0 1.1e-23 83.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|386002698|ref|YP_005920997.1| - 2.2e-18 67.0 0.0 8.7e-18 65.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|386002698|ref|YP_005920997.1| - 1.7e-12 47.7 0.0 2.3e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|386002698|ref|YP_005920997.1| - 7.8e-12 45.0 0.0 1.2e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|386002698|ref|YP_005920997.1| - 0.00018 21.1 0.0 0.00026 20.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 PmbA_TldD PF01523.16 gi|386002699|ref|YP_005920998.1| - 4.1e-61 207.3 1.7 5.4e-61 206.9 1.7 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.13 gi|386002700|ref|YP_005920999.1| - 1.7e-33 115.9 1.7 2.6e-33 115.3 1.7 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|386002700|ref|YP_005920999.1| - 2.4e-28 99.2 0.0 5.3e-22 78.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|386002700|ref|YP_005920999.1| - 1.7e-15 56.9 0.0 3.1e-08 33.2 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|386002700|ref|YP_005920999.1| - 2.2e-14 53.5 0.0 1.9e-08 34.2 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|386002700|ref|YP_005920999.1| - 1.1e-10 41.6 0.1 0.0011 18.9 0.0 3.7 3 1 0 3 3 3 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|386002700|ref|YP_005920999.1| - 1.3e-09 38.0 0.8 2.5e-09 37.0 0.8 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 gi|386002700|ref|YP_005920999.1| - 2.8e-06 26.6 0.2 0.02 14.0 0.0 2.9 4 0 0 4 4 4 2 MCM P-loop domain AAA PF00004.29 gi|386002700|ref|YP_005920999.1| - 1.5e-05 25.4 0.0 0.24 11.8 0.0 3.2 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|386002700|ref|YP_005920999.1| - 4.5e-05 23.7 0.0 0.005 17.1 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|386002700|ref|YP_005920999.1| - 0.00082 19.7 0.2 0.0057 17.0 0.2 2.3 1 1 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.6 gi|386002700|ref|YP_005920999.1| - 0.0017 18.5 0.0 0.63 10.2 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|386002700|ref|YP_005920999.1| - 0.0025 17.6 0.0 0.11 12.2 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|386002700|ref|YP_005920999.1| - 0.003 17.1 0.0 0.016 14.8 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|386002700|ref|YP_005920999.1| - 0.0055 17.1 0.2 0.3 11.5 0.0 2.9 4 0 0 4 4 2 1 AAA ATPase domain TIP49 PF06068.13 gi|386002700|ref|YP_005920999.1| - 0.0079 15.4 0.0 2.6 7.2 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_3 PF07726.11 gi|386002700|ref|YP_005920999.1| - 0.013 15.4 0.0 7.5 6.4 0.0 2.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF1676 PF07898.13 gi|386002700|ref|YP_005920999.1| - 0.014 15.4 0.3 0.048 13.7 0.2 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF1676) AAA_18 PF13238.6 gi|386002700|ref|YP_005920999.1| - 0.019 15.5 0.0 0.065 13.8 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|386002700|ref|YP_005920999.1| - 0.019 14.7 0.0 0.078 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|386002700|ref|YP_005920999.1| - 0.071 13.2 0.0 3.7 7.7 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|386002700|ref|YP_005920999.1| - 0.14 12.6 0.0 0.82 10.2 0.0 2.2 2 1 1 3 3 3 0 ABC transporter AAA PF00004.29 gi|386002701|ref|YP_005921000.1| - 4.5e-95 315.1 0.0 5e-47 159.6 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|386002701|ref|YP_005921000.1| - 1.7e-28 98.1 0.5 1.7e-13 50.1 0.2 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|386002701|ref|YP_005921000.1| - 6.6e-27 93.5 0.1 2.7e-26 91.6 0.5 1.8 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|386002701|ref|YP_005921000.1| - 3.8e-15 56.0 0.0 2.8e-07 30.4 0.0 2.9 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|386002701|ref|YP_005921000.1| - 6.2e-13 48.3 0.1 1.4e-12 47.2 0.1 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|386002701|ref|YP_005921000.1| - 3e-12 47.2 0.3 3.2e-05 24.4 0.0 3.2 2 1 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|386002701|ref|YP_005921000.1| - 6.3e-12 45.9 0.0 7.8e-06 26.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|386002701|ref|YP_005921000.1| - 4.5e-11 42.9 0.7 0.00021 21.3 0.1 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|386002701|ref|YP_005921000.1| - 3.4e-10 39.7 0.0 0.00012 21.4 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|386002701|ref|YP_005921000.1| - 5.5e-10 39.7 0.8 0.0031 17.8 0.1 3.9 2 2 1 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|386002701|ref|YP_005921000.1| - 1.3e-08 35.0 0.0 0.0027 17.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|386002701|ref|YP_005921000.1| - 1.8e-08 34.7 0.0 0.0067 16.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|386002701|ref|YP_005921000.1| - 1.1e-07 31.7 0.0 0.015 15.1 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|386002701|ref|YP_005921000.1| - 5.3e-07 30.2 0.0 0.034 14.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|386002701|ref|YP_005921000.1| - 6.2e-07 29.2 4.0 1.8 8.1 0.2 4.3 3 1 0 4 4 4 1 AAA domain Mg_chelatase PF01078.21 gi|386002701|ref|YP_005921000.1| - 2e-06 27.3 2.5 0.045 13.1 0.1 3.0 4 0 0 4 4 3 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|386002701|ref|YP_005921000.1| - 9.1e-06 26.0 0.0 0.12 12.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|386002701|ref|YP_005921000.1| - 1.6e-05 24.7 0.1 0.44 10.2 0.0 3.5 2 2 0 2 2 2 2 Sigma-54 interaction domain ATPase PF06745.13 gi|386002701|ref|YP_005921000.1| - 2.4e-05 23.8 0.6 0.18 11.1 0.0 3.2 2 1 1 3 3 3 2 KaiC TsaE PF02367.17 gi|386002701|ref|YP_005921000.1| - 4.7e-05 23.4 0.2 0.22 11.5 0.1 2.9 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|386002701|ref|YP_005921000.1| - 4.9e-05 22.9 0.1 0.21 11.0 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein AAA_7 PF12775.7 gi|386002701|ref|YP_005921000.1| - 6.9e-05 22.4 0.0 0.28 10.7 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|386002701|ref|YP_005921000.1| - 7.3e-05 23.1 0.0 0.66 10.4 0.0 2.4 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.27 gi|386002701|ref|YP_005921000.1| - 8.5e-05 23.1 0.0 0.46 11.0 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.11 gi|386002701|ref|YP_005921000.1| - 0.00011 22.1 0.0 0.44 10.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|386002701|ref|YP_005921000.1| - 0.00016 21.5 0.0 0.54 9.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|386002701|ref|YP_005921000.1| - 0.00073 18.9 0.0 0.92 8.7 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_17 PF13207.6 gi|386002701|ref|YP_005921000.1| - 0.00091 19.7 0.0 0.8 10.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|386002701|ref|YP_005921000.1| - 0.0011 18.9 0.1 5.6 6.8 0.0 3.6 3 1 1 4 4 4 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|386002701|ref|YP_005921000.1| - 0.0012 18.6 0.3 2.1 8.0 0.0 3.0 3 0 0 3 3 2 1 AAA domain AAA_19 PF13245.6 gi|386002701|ref|YP_005921000.1| - 0.0018 18.6 1.2 2.1 8.7 0.1 2.9 2 1 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|386002701|ref|YP_005921000.1| - 0.002 18.2 0.0 2.1 8.4 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain Cytidylate_kin2 PF13189.6 gi|386002701|ref|YP_005921000.1| - 0.0027 17.9 0.0 1.2 9.2 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family DUF815 PF05673.13 gi|386002701|ref|YP_005921000.1| - 0.0028 16.9 0.0 1.4 8.0 0.0 2.6 3 0 0 3 3 2 1 Protein of unknown function (DUF815) NACHT PF05729.12 gi|386002701|ref|YP_005921000.1| - 0.0029 17.5 0.2 2.7 7.9 0.1 3.5 4 0 0 4 4 4 1 NACHT domain DUF2075 PF09848.9 gi|386002701|ref|YP_005921000.1| - 0.0035 16.7 0.0 1.3 8.1 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.17 gi|386002701|ref|YP_005921000.1| - 0.0035 16.5 0.0 1.6 7.8 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 IPT PF01745.16 gi|386002701|ref|YP_005921000.1| - 0.0046 16.4 0.0 2.6 7.4 0.0 2.3 2 0 0 2 2 2 1 Isopentenyl transferase AAA_11 PF13086.6 gi|386002701|ref|YP_005921000.1| - 0.01 15.6 0.0 4.4 7.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|386002701|ref|YP_005921000.1| - 0.012 15.4 0.1 3.8 7.2 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase Bac_DnaA PF00308.18 gi|386002701|ref|YP_005921000.1| - 0.034 14.0 0.0 2.2 8.1 0.0 2.6 3 0 0 3 3 2 0 Bacterial dnaA protein NTPase_1 PF03266.15 gi|386002701|ref|YP_005921000.1| - 0.036 14.0 0.3 20 5.1 0.0 3.3 2 1 1 3 3 3 0 NTPase SKI PF01202.22 gi|386002701|ref|YP_005921000.1| - 0.038 14.1 0.1 11 6.1 0.0 2.4 2 0 0 2 2 2 0 Shikimate kinase NB-ARC PF00931.22 gi|386002701|ref|YP_005921000.1| - 0.043 13.0 0.0 9 5.4 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain TniB PF05621.11 gi|386002701|ref|YP_005921000.1| - 0.072 12.5 0.0 7.7 5.9 0.0 2.8 4 0 0 4 4 2 0 Bacterial TniB protein ATPase_2 PF01637.18 gi|386002701|ref|YP_005921000.1| - 0.094 12.6 0.1 30 4.4 0.0 3.2 2 2 1 3 3 3 0 ATPase domain predominantly from Archaea SRPRB PF09439.10 gi|386002701|ref|YP_005921000.1| - 0.14 11.5 0.0 26 4.2 0.0 2.9 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.6 gi|386002701|ref|YP_005921000.1| - 0.15 11.8 0.0 18 5.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Guanylate_kin PF00625.21 gi|386002701|ref|YP_005921000.1| - 0.18 11.5 0.1 26 4.5 0.0 3.2 3 1 1 4 4 4 0 Guanylate kinase Viral_helicase1 PF01443.18 gi|386002701|ref|YP_005921000.1| - 0.25 11.1 0.0 3.8 7.2 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase HTH_20 PF12840.7 gi|386002702|ref|YP_005921001.1| - 3.4e-13 49.4 6.9 2e-11 43.8 0.0 2.8 3 1 0 3 3 3 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|386002702|ref|YP_005921001.1| - 6.9e-11 41.8 0.0 4.2e-08 32.9 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|386002702|ref|YP_005921001.1| - 2.7e-07 30.4 5.8 0.00039 20.2 0.0 3.4 2 1 2 4 4 4 2 MarR family TrmB PF01978.19 gi|386002702|ref|YP_005921001.1| - 3.9e-07 29.9 0.0 0.0012 18.6 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|386002702|ref|YP_005921001.1| - 2.4e-06 27.0 2.9 0.0075 15.8 0.0 3.9 4 0 0 4 4 4 2 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|386002702|ref|YP_005921001.1| - 7.7e-06 25.9 5.4 0.003 17.6 0.0 2.8 3 0 0 3 3 2 2 DprA winged helix domain LexA_DNA_bind PF01726.16 gi|386002702|ref|YP_005921001.1| - 0.00026 20.7 0.1 0.016 15.0 0.0 2.5 2 0 0 2 2 2 1 LexA DNA binding domain Rrf2 PF02082.20 gi|386002702|ref|YP_005921001.1| - 0.00028 21.2 0.0 1.2 9.5 0.0 2.5 2 0 0 2 2 2 2 Transcriptional regulator HTH_27 PF13463.6 gi|386002702|ref|YP_005921001.1| - 0.0026 18.2 1.2 0.87 10.1 0.0 3.3 2 1 1 3 3 3 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|386002702|ref|YP_005921001.1| - 0.0054 16.5 0.8 0.53 10.1 0.2 2.8 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|386002702|ref|YP_005921001.1| - 0.0059 16.6 1.0 1 9.4 0.0 2.8 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain DDRGK PF09756.9 gi|386002702|ref|YP_005921001.1| - 0.0065 16.1 0.0 1.2 8.7 0.0 2.7 3 0 0 3 3 3 1 DDRGK domain MarR PF01047.22 gi|386002702|ref|YP_005921001.1| - 0.023 14.6 0.1 0.18 11.8 0.0 2.3 2 0 0 2 2 2 0 MarR family DUF2250 PF10007.9 gi|386002702|ref|YP_005921001.1| - 0.024 14.7 0.1 0.72 10.0 0.0 2.7 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.21 gi|386002702|ref|YP_005921001.1| - 0.028 14.1 0.2 0.83 9.3 0.3 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family PadR PF03551.14 gi|386002702|ref|YP_005921001.1| - 0.077 13.0 0.0 0.32 11.0 0.0 2.1 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.19 gi|386002702|ref|YP_005921001.1| - 0.1 12.8 0.0 20 5.5 0.0 2.4 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|386002702|ref|YP_005921001.1| - 0.11 12.3 0.0 9.7 6.1 0.0 2.5 2 0 0 2 2 2 0 HTH DNA binding domain FeoC PF09012.10 gi|386002702|ref|YP_005921001.1| - 0.16 12.0 0.0 11 6.2 0.0 2.4 2 0 0 2 2 2 0 FeoC like transcriptional regulator DUF21 PF01595.20 gi|386002703|ref|YP_005921002.1| - 1.3e-44 152.0 1.5 1.8e-44 151.5 1.5 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|386002703|ref|YP_005921002.1| - 2.8e-23 81.7 0.4 1.3e-22 79.6 0.0 2.1 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|386002703|ref|YP_005921002.1| - 5.5e-11 42.8 1.4 3.3e-08 33.8 0.1 2.7 3 0 0 3 3 3 2 CBS domain Peptidase_M48 PF01435.18 gi|386002704|ref|YP_005921003.1| - 6.9e-38 130.4 0.0 8.9e-38 130.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|386002704|ref|YP_005921003.1| - 0.00039 19.7 0.1 0.00067 18.9 0.1 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF4157 PF13699.6 gi|386002704|ref|YP_005921003.1| - 0.078 13.2 0.1 0.19 12.0 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) TPR_1 PF00515.28 gi|386002705|ref|YP_005921004.1| - 2.2e-143 460.9 37.6 2e-10 40.1 0.3 17.5 18 1 0 18 18 18 15 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386002705|ref|YP_005921004.1| - 9.4e-127 403.2 56.8 5.8e-09 35.4 0.5 17.3 17 0 0 17 17 17 16 Tetratricopeptide repeat TPR_8 PF13181.6 gi|386002705|ref|YP_005921004.1| - 1.4e-107 343.1 14.1 6.7e-07 29.0 0.0 17.2 17 1 0 17 17 17 15 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386002705|ref|YP_005921004.1| - 2.2e-107 350.5 47.4 4.6e-10 39.0 0.5 17.1 5 4 12 17 17 17 17 TPR repeat TPR_17 PF13431.6 gi|386002705|ref|YP_005921004.1| - 8.9e-93 298.2 30.1 3.9e-07 30.0 0.0 17.1 17 0 0 17 17 17 16 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386002705|ref|YP_005921004.1| - 2.8e-79 261.5 87.6 2.9e-12 47.0 1.2 11.2 5 3 6 12 12 12 12 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386002705|ref|YP_005921004.1| - 7.4e-63 203.8 84.6 0.00036 21.1 0.0 17.2 2 2 15 17 17 17 17 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386002705|ref|YP_005921004.1| - 5e-62 206.2 62.7 2.6e-09 37.2 1.7 12.6 4 4 10 14 14 14 13 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386002705|ref|YP_005921004.1| - 1.7e-52 175.5 62.2 1.8e-08 34.4 3.1 10.8 2 1 10 13 13 13 13 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386002705|ref|YP_005921004.1| - 7.4e-51 170.5 49.4 9.1e-09 35.7 0.1 10.7 5 3 4 11 11 11 10 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386002705|ref|YP_005921004.1| - 5.5e-41 135.6 44.2 0.0048 16.8 0.0 16.9 15 1 2 17 17 17 13 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386002705|ref|YP_005921004.1| - 6.3e-29 98.7 24.2 0.11 13.1 0.1 16.3 17 0 0 17 17 16 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386002705|ref|YP_005921004.1| - 1.7e-22 78.6 78.0 0.035 14.0 0.4 16.7 17 1 1 18 18 17 9 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386002705|ref|YP_005921004.1| - 3.7e-22 78.4 4.8 0.0046 17.1 0.0 7.2 5 2 2 7 7 7 6 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.17 gi|386002705|ref|YP_005921004.1| - 5.3e-20 72.3 42.9 0.0053 17.2 2.2 8.8 2 1 6 9 9 9 9 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|386002705|ref|YP_005921004.1| - 2.4e-15 56.8 21.0 0.057 13.5 0.1 10.8 5 5 5 10 10 10 4 Domain of Unknown Function (DUF3856) NARP1 PF12569.8 gi|386002705|ref|YP_005921004.1| - 4.1e-12 45.8 1.7 0.76 8.6 0.1 8.2 2 2 5 9 9 9 2 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|386002705|ref|YP_005921004.1| - 5.5e-12 45.5 29.6 0.00084 18.6 0.7 7.5 2 1 6 8 8 8 5 Tetratricopeptide repeat FAT PF02259.23 gi|386002705|ref|YP_005921004.1| - 1e-10 41.4 0.2 1.5 8.0 0.0 8.5 5 4 3 8 8 8 1 FAT domain TPR_4 PF07721.14 gi|386002705|ref|YP_005921004.1| - 1.9e-09 37.2 93.6 0.86 10.4 0.0 16.9 17 0 0 17 17 16 4 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|386002705|ref|YP_005921004.1| - 3.7e-06 26.6 0.7 2.8 7.3 0.1 5.8 5 1 1 6 6 6 1 Coatomer epsilon subunit TPR_3 PF07720.12 gi|386002705|ref|YP_005921004.1| - 1.6e-05 24.7 8.6 7.9 6.6 0.0 7.7 8 0 0 8 8 6 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|386002705|ref|YP_005921004.1| - 6.7e-05 22.7 26.7 0.13 12.0 0.1 9.1 2 2 7 11 11 11 2 Tetratricopeptide repeat-like domain Imm31 PF15591.6 gi|386002705|ref|YP_005921004.1| - 0.00016 21.5 0.2 0.18 11.6 0.0 4.6 5 0 0 5 5 4 1 Immunity protein 31 Fis1_TPR_C PF14853.6 gi|386002705|ref|YP_005921004.1| - 0.00022 21.2 17.4 2.8 8.1 0.1 8.6 11 1 1 12 12 9 1 Fis1 C-terminal tetratricopeptide repeat TPR_5 PF12688.7 gi|386002705|ref|YP_005921004.1| - 0.003 17.8 15.8 0.041 14.1 1.1 6.8 4 2 1 5 5 5 1 Tetratrico peptide repeat RPN7 PF10602.9 gi|386002705|ref|YP_005921004.1| - 0.0047 16.6 2.3 22 4.7 0.0 6.3 4 3 5 9 9 9 0 26S proteasome subunit RPN7 PPTA PF01239.22 gi|386002705|ref|YP_005921004.1| - 0.0076 15.9 0.9 1.8 8.4 0.0 5.0 4 0 0 4 4 3 1 Protein prenyltransferase alpha subunit repeat TPR_20 PF14561.6 gi|386002705|ref|YP_005921004.1| - 0.012 15.9 17.8 1.7 9.0 0.0 7.7 3 2 7 11 11 10 0 Tetratricopeptide repeat TruB_N PF01509.18 gi|386002705|ref|YP_005921004.1| - 0.013 15.9 0.0 41 4.5 0.0 4.2 3 1 3 6 6 6 0 TruB family pseudouridylate synthase (N terminal domain) Rota_NSP3 PF01665.16 gi|386002705|ref|YP_005921004.1| - 0.013 14.6 0.0 0.41 9.7 0.0 2.9 2 2 1 3 3 3 0 Rotavirus non-structural protein NSP3 EST1_DNA_bind PF10373.9 gi|386002705|ref|YP_005921004.1| - 0.014 14.9 0.1 3.4 7.0 0.0 3.2 3 1 1 4 4 4 0 Est1 DNA/RNA binding domain DUF5113 PF17140.4 gi|386002705|ref|YP_005921004.1| - 0.015 15.1 3.3 94 2.8 0.0 6.6 4 2 4 8 8 8 0 Domain of unknown function (DUF5113) MIT PF04212.18 gi|386002705|ref|YP_005921004.1| - 0.13 12.4 30.3 20 5.3 0.1 11.3 13 1 1 14 14 12 0 MIT (microtubule interacting and transport) domain Alkyl_sulf_dimr PF14863.6 gi|386002705|ref|YP_005921004.1| - 1.4 9.4 6.6 2.3e+02 2.2 0.0 5.4 5 1 0 6 6 6 0 Alkyl sulfatase dimerisation SNAP PF14938.6 gi|386002705|ref|YP_005921004.1| - 5.4 6.3 10.8 2.1 7.7 0.1 5.1 4 2 1 5 5 5 0 Soluble NSF attachment protein, SNAP SHNi-TPR PF10516.9 gi|386002705|ref|YP_005921004.1| - 6.6 6.3 12.0 12 5.5 0.1 6.3 7 0 0 7 7 7 0 SHNi-TPR HEAT_EZ PF13513.6 gi|386002705|ref|YP_005921004.1| - 6.6 7.3 12.5 21 5.7 0.3 4.9 4 0 0 4 4 3 0 HEAT-like repeat TPR_1 PF00515.28 gi|386002706|ref|YP_005921005.1| - 9.9e-32 107.5 0.0 7.9e-09 35.0 0.0 4.0 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386002706|ref|YP_005921005.1| - 4.2e-26 88.9 0.1 1.7e-07 30.8 0.0 4.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386002706|ref|YP_005921005.1| - 3.3e-24 84.3 0.9 2.5e-09 36.7 0.0 4.0 2 2 2 4 4 4 4 TPR repeat TPR_8 PF13181.6 gi|386002706|ref|YP_005921005.1| - 1.7e-22 77.7 0.0 3.7e-06 26.7 0.0 3.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386002706|ref|YP_005921005.1| - 2.1e-18 65.3 0.0 6.5e-05 23.0 0.0 3.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386002706|ref|YP_005921005.1| - 1.7e-17 63.3 0.7 1.2e-08 35.0 0.3 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386002706|ref|YP_005921005.1| - 2.9e-17 63.0 1.3 6.8e-11 42.6 0.4 2.7 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386002706|ref|YP_005921005.1| - 1.9e-16 60.1 6.8 9.9e-07 29.0 0.4 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386002706|ref|YP_005921005.1| - 3.3e-14 52.4 1.7 2.4e-05 24.8 0.3 4.0 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386002706|ref|YP_005921005.1| - 1.2e-11 44.9 0.0 0.00013 22.4 0.0 2.1 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386002706|ref|YP_005921005.1| - 2.4e-11 42.8 0.1 0.0021 18.0 0.0 3.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386002706|ref|YP_005921005.1| - 3e-09 36.9 0.1 0.014 16.0 0.0 3.6 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|386002706|ref|YP_005921005.1| - 1.4e-05 24.8 1.3 0.014 15.3 0.1 3.5 4 0 0 4 4 4 1 Tetratricopeptide repeat BTAD PF03704.17 gi|386002706|ref|YP_005921005.1| - 0.00018 21.9 0.6 0.074 13.5 0.2 2.2 1 1 2 3 3 3 2 Bacterial transcriptional activator domain DUF3856 PF12968.7 gi|386002706|ref|YP_005921005.1| - 0.0024 18.0 0.1 4.5 7.3 0.0 2.9 1 1 0 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_15 PF13429.6 gi|386002706|ref|YP_005921005.1| - 0.0025 17.1 0.0 0.072 12.3 0.0 2.5 1 1 0 1 1 1 1 Tetratricopeptide repeat PPR PF01535.20 gi|386002706|ref|YP_005921005.1| - 0.0073 16.5 0.3 1.5 9.2 0.0 3.4 4 0 0 4 4 4 1 PPR repeat TPR_21 PF09976.9 gi|386002706|ref|YP_005921005.1| - 0.0084 15.8 0.3 2 8.1 0.0 2.5 1 1 2 3 3 3 1 Tetratricopeptide repeat-like domain MIT PF04212.18 gi|386002706|ref|YP_005921005.1| - 0.0095 16.0 0.2 17 5.6 0.0 3.6 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain NARP1 PF12569.8 gi|386002706|ref|YP_005921005.1| - 0.022 13.7 0.0 1 8.2 0.0 2.1 1 1 1 2 2 2 0 NMDA receptor-regulated protein 1 ANAPC3 PF12895.7 gi|386002706|ref|YP_005921005.1| - 0.029 14.6 0.1 0.6 10.4 0.0 2.1 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.6 gi|386002706|ref|YP_005921005.1| - 0.031 14.4 0.3 6.9 6.8 0.0 3.0 2 1 1 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat TOM20_plant PF06552.12 gi|386002706|ref|YP_005921005.1| - 0.045 13.5 0.0 9.7 5.9 0.0 2.1 1 1 1 2 2 2 0 Plant specific mitochondrial import receptor subunit TOM20 RPN7 PF10602.9 gi|386002706|ref|YP_005921005.1| - 0.055 13.2 0.0 0.66 9.7 0.0 2.2 2 0 0 2 2 2 0 26S proteasome subunit RPN7 TPR_5 PF12688.7 gi|386002706|ref|YP_005921005.1| - 0.1 12.9 0.1 7.1 6.9 0.0 2.5 2 1 1 3 3 3 0 Tetratrico peptide repeat Rota_NSP3 PF01665.16 gi|386002706|ref|YP_005921005.1| - 0.18 10.9 0.0 0.29 10.2 0.0 1.2 1 1 0 1 1 1 0 Rotavirus non-structural protein NSP3 TPR_1 PF00515.28 gi|386002707|ref|YP_005921006.1| - 8.8e-221 705.8 47.0 1.1e-11 44.1 0.2 26.0 25 1 1 26 26 26 26 Tetratricopeptide repeat TPR_2 PF07719.17 gi|386002707|ref|YP_005921006.1| - 2.5e-196 620.5 60.4 2.7e-10 39.6 0.2 26.0 25 1 1 26 26 26 25 Tetratricopeptide repeat TPR_11 PF13414.6 gi|386002707|ref|YP_005921006.1| - 1.2e-175 569.0 66.2 7.2e-13 48.0 0.1 25.5 3 3 23 26 26 26 25 TPR repeat TPR_8 PF13181.6 gi|386002707|ref|YP_005921006.1| - 7.5e-151 478.1 29.0 7.8e-08 31.9 0.0 26.0 25 1 1 26 26 26 22 Tetratricopeptide repeat TPR_16 PF13432.6 gi|386002707|ref|YP_005921006.1| - 1.7e-124 406.2 69.7 5.1e-12 46.2 1.4 14.8 5 4 9 17 17 17 17 Tetratricopeptide repeat TPR_17 PF13431.6 gi|386002707|ref|YP_005921006.1| - 9.2e-122 389.0 23.1 5.2e-07 29.6 0.2 25.4 26 0 0 26 26 26 20 Tetratricopeptide repeat TPR_14 PF13428.6 gi|386002707|ref|YP_005921006.1| - 3.9e-103 329.2 73.6 2.7e-06 27.7 0.6 24.6 3 3 22 25 25 25 23 Tetratricopeptide repeat TPR_19 PF14559.6 gi|386002707|ref|YP_005921006.1| - 1.5e-94 310.5 24.0 2e-10 41.0 2.9 15.0 6 3 9 17 17 17 17 Tetratricopeptide repeat TPR_12 PF13424.6 gi|386002707|ref|YP_005921006.1| - 4.4e-93 305.7 68.2 3.8e-10 39.9 0.3 19.3 4 3 15 20 20 20 19 Tetratricopeptide repeat TPR_9 PF13371.6 gi|386002707|ref|YP_005921006.1| - 2.7e-89 293.4 67.5 1e-09 38.4 1.1 17.4 3 2 18 21 21 21 21 Tetratricopeptide repeat TPR_7 PF13176.6 gi|386002707|ref|YP_005921006.1| - 6.1e-65 210.6 59.7 0.00032 20.5 0.1 24.5 19 3 6 25 25 24 15 Tetratricopeptide repeat TPR_6 PF13174.6 gi|386002707|ref|YP_005921006.1| - 4.4e-59 193.3 45.5 0.0016 18.9 0.1 23.8 24 0 0 24 24 24 12 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|386002707|ref|YP_005921006.1| - 1.7e-49 165.9 10.2 2.2e-06 27.8 0.1 11.7 6 2 5 12 12 12 11 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|386002707|ref|YP_005921006.1| - 2.8e-36 122.4 84.4 0.0011 18.7 0.4 23.7 25 0 0 25 25 25 10 Tetratricopeptide repeat BTAD PF03704.17 gi|386002707|ref|YP_005921006.1| - 1.8e-35 122.5 31.2 0.0013 19.2 0.1 13.1 4 2 6 13 13 13 8 Bacterial transcriptional activator domain NARP1 PF12569.8 gi|386002707|ref|YP_005921006.1| - 2.6e-29 102.6 0.0 0.0051 15.8 0.0 11.4 6 3 4 12 12 12 7 NMDA receptor-regulated protein 1 DUF3856 PF12968.7 gi|386002707|ref|YP_005921006.1| - 1.3e-27 96.7 22.4 0.37 10.9 0.0 17.9 4 4 14 19 19 19 5 Domain of Unknown Function (DUF3856) TPR_4 PF07721.14 gi|386002707|ref|YP_005921006.1| - 1.1e-25 87.5 74.0 0.11 13.2 2.8 20.5 23 0 0 23 23 20 6 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|386002707|ref|YP_005921006.1| - 2.7e-25 88.2 31.7 0.00068 19.7 0.1 17.1 13 5 7 20 20 18 5 Fis1 C-terminal tetratricopeptide repeat TPR_3 PF07720.12 gi|386002707|ref|YP_005921006.1| - 6.4e-20 70.8 15.8 0.5 10.4 0.0 17.0 19 0 0 19 19 18 2 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|386002707|ref|YP_005921006.1| - 1.5e-18 66.9 0.0 0.0066 16.5 0.1 7.7 2 2 6 9 9 8 5 Putative TPR-like repeat TPR_15 PF13429.6 gi|386002707|ref|YP_005921006.1| - 4.7e-13 49.0 11.3 0.21 10.7 1.1 8.1 2 2 4 8 8 8 5 Tetratricopeptide repeat TPR_20 PF14561.6 gi|386002707|ref|YP_005921006.1| - 1.9e-12 47.3 2.3 0.66 10.4 0.3 9.0 5 3 5 10 10 10 2 Tetratricopeptide repeat PPR PF01535.20 gi|386002707|ref|YP_005921006.1| - 1.2e-08 34.7 32.1 2.8 8.4 0.0 16.7 20 0 0 20 20 16 1 PPR repeat NRBF2_MIT PF17169.4 gi|386002707|ref|YP_005921006.1| - 1.4e-08 34.9 24.3 6.5 7.0 0.0 14.5 14 4 3 17 17 15 0 MIT domain of nuclear receptor-binding factor 2 Coatomer_E PF04733.14 gi|386002707|ref|YP_005921006.1| - 1.9e-06 27.6 0.0 0.13 11.7 0.0 4.7 4 1 1 5 5 5 2 Coatomer epsilon subunit MIT PF04212.18 gi|386002707|ref|YP_005921006.1| - 6.2e-06 26.2 49.5 1.3 9.2 0.8 16.4 19 0 0 19 19 16 1 MIT (microtubule interacting and transport) domain TPR_MalT PF17874.1 gi|386002707|ref|YP_005921006.1| - 7e-05 22.4 0.0 0.25 10.7 0.2 5.8 4 2 1 5 5 5 1 MalT-like TPR region FAT PF02259.23 gi|386002707|ref|YP_005921006.1| - 7.8e-05 22.0 0.0 11 5.2 0.0 6.5 4 2 2 7 7 7 0 FAT domain Alkyl_sulf_dimr PF14863.6 gi|386002707|ref|YP_005921006.1| - 0.00017 22.0 0.0 20 5.6 0.0 6.4 6 2 1 8 8 6 0 Alkyl sulfatase dimerisation TPR_21 PF09976.9 gi|386002707|ref|YP_005921006.1| - 0.00022 21.0 28.0 2.3 7.9 0.1 11.0 9 5 3 13 13 12 2 Tetratricopeptide repeat-like domain Rota_NSP3 PF01665.16 gi|386002707|ref|YP_005921006.1| - 0.00033 19.9 0.0 2.6 7.1 0.0 3.9 2 1 1 3 3 3 1 Rotavirus non-structural protein NSP3 SNAP PF14938.6 gi|386002707|ref|YP_005921006.1| - 0.001 18.6 15.3 4.4 6.6 0.0 8.5 4 4 4 8 8 8 0 Soluble NSF attachment protein, SNAP TPR_5 PF12688.7 gi|386002707|ref|YP_005921006.1| - 0.0016 18.6 20.2 9.5 6.5 0.0 10.4 11 4 2 13 13 10 0 Tetratrico peptide repeat Rapsyn_N PF10579.9 gi|386002707|ref|YP_005921006.1| - 0.032 14.3 0.0 13 6.0 0.0 4.6 5 0 0 5 5 4 0 Rapsyn N-terminal myristoylation and linker region ChAPs PF09295.10 gi|386002707|ref|YP_005921006.1| - 0.044 12.8 0.0 5.8 5.8 0.0 3.3 4 0 0 4 4 4 0 ChAPs (Chs5p-Arf1p-binding proteins) PknG_TPR PF16918.5 gi|386002707|ref|YP_005921006.1| - 0.048 12.4 10.4 1.5 7.5 0.1 5.9 4 2 3 7 7 7 0 Protein kinase G tetratricopeptide repeat HTH_Bact PF18768.1 gi|386002707|ref|YP_005921006.1| - 0.53 9.9 7.0 98 2.6 0.3 6.6 7 0 0 7 7 5 0 Helix-turn-helix bacterial domain SHNi-TPR PF10516.9 gi|386002707|ref|YP_005921006.1| - 2.2 7.8 6.0 14 5.3 0.0 5.6 7 0 0 7 7 4 0 SHNi-TPR RPN7 PF10602.9 gi|386002707|ref|YP_005921006.1| - 3.6 7.3 19.8 29 4.3 0.1 9.3 9 5 4 14 14 8 0 26S proteasome subunit RPN7 Aida_N PF08910.10 gi|386002707|ref|YP_005921006.1| - 5.6 7.4 6.1 66 4.0 0.0 5.3 5 1 1 6 6 5 0 Aida N-terminus Acetyltransf_1 PF00583.25 gi|386002708|ref|YP_005921007.1| - 4.4e-13 49.5 0.1 5.3e-13 49.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|386002708|ref|YP_005921007.1| - 1.6e-10 41.0 0.0 2.1e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|386002708|ref|YP_005921007.1| - 3e-09 36.7 0.2 4.9e-09 36.0 0.2 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|386002708|ref|YP_005921007.1| - 3.1e-08 33.9 0.2 4.2e-08 33.5 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|386002708|ref|YP_005921007.1| - 2.1e-05 24.6 0.0 0.01 15.9 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|386002708|ref|YP_005921007.1| - 0.015 15.4 0.0 0.019 15.1 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|386002708|ref|YP_005921007.1| - 0.1 12.7 0.1 0.18 12.0 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|386002708|ref|YP_005921007.1| - 0.2 11.3 0.0 0.3 10.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF2111 PF09884.9 gi|386002709|ref|YP_005921008.1| - 1.4e-32 111.6 3.8 2.3e-32 110.9 3.8 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Ntox46 PF15538.6 gi|386002709|ref|YP_005921008.1| - 0.036 14.0 0.0 0.048 13.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial toxin 46 Phage_holin_8 PF16931.5 gi|386002709|ref|YP_005921008.1| - 0.073 13.1 1.6 0.12 12.4 1.6 1.3 1 0 0 1 1 1 0 Putative phage holin Arginosuc_synth PF00764.19 gi|386002710|ref|YP_005921009.1| - 7e-164 545.7 0.0 8e-164 545.5 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.17 gi|386002710|ref|YP_005921009.1| - 0.0052 15.9 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|386002710|ref|YP_005921009.1| - 0.095 12.2 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Radical_SAM PF04055.21 gi|386002711|ref|YP_005921010.1| - 8.4e-18 65.3 0.1 1.5e-17 64.4 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|386002711|ref|YP_005921010.1| - 2.4e-07 31.1 0.0 4.3e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|386002711|ref|YP_005921010.1| - 0.1 12.8 0.0 0.25 11.6 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF1611_N PF17396.2 gi|386002711|ref|YP_005921010.1| - 0.17 12.1 0.1 16 5.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain MMR_HSR1 PF01926.23 gi|386002712|ref|YP_005921011.1| - 2.2e-16 59.9 0.0 2.8e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|386002712|ref|YP_005921011.1| - 3e-14 53.0 0.1 4.5e-06 26.3 0.0 3.0 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|386002712|ref|YP_005921011.1| - 6.6e-06 26.1 0.1 0.028 14.3 0.0 2.1 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|386002712|ref|YP_005921011.1| - 9.9e-06 25.2 0.1 3.2e-05 23.5 0.1 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.21 gi|386002712|ref|YP_005921011.1| - 2.1e-05 24.0 0.0 0.036 13.5 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family Roc PF08477.13 gi|386002712|ref|YP_005921011.1| - 9.7e-05 22.6 0.0 0.03 14.6 0.0 2.2 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|386002712|ref|YP_005921011.1| - 0.00068 19.1 0.0 0.14 11.6 0.0 2.3 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|386002712|ref|YP_005921011.1| - 0.00072 19.2 0.0 0.11 12.1 0.0 2.5 2 1 0 2 2 2 1 Ras family AAA_24 PF13479.6 gi|386002712|ref|YP_005921011.1| - 0.00085 19.1 0.0 0.0015 18.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain Septin PF00735.18 gi|386002712|ref|YP_005921011.1| - 0.0017 17.7 0.0 0.0025 17.2 0.0 1.2 1 0 0 1 1 1 1 Septin AAA PF00004.29 gi|386002712|ref|YP_005921011.1| - 0.0029 18.0 0.0 0.0062 17.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|386002712|ref|YP_005921011.1| - 0.0038 17.8 0.0 0.011 16.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|386002712|ref|YP_005921011.1| - 0.0046 16.9 0.0 0.0067 16.4 0.0 1.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|386002712|ref|YP_005921011.1| - 0.0081 16.1 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 NTPase MeaB PF03308.16 gi|386002712|ref|YP_005921011.1| - 0.0083 15.1 0.0 2.6 7.0 0.0 2.6 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1_Xtn PF16897.5 gi|386002712|ref|YP_005921011.1| - 0.013 15.5 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Parvo_NS1 PF01057.17 gi|386002712|ref|YP_005921011.1| - 0.019 14.1 0.1 0.029 13.5 0.1 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_22 PF13401.6 gi|386002712|ref|YP_005921011.1| - 0.028 14.7 0.0 0.22 11.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|386002712|ref|YP_005921011.1| - 0.043 14.1 0.0 0.065 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|386002712|ref|YP_005921011.1| - 0.044 14.2 0.0 0.082 13.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|386002712|ref|YP_005921011.1| - 0.051 12.8 0.0 0.097 11.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.19 gi|386002712|ref|YP_005921011.1| - 0.054 13.1 0.1 0.23 11.0 0.1 2.1 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|386002712|ref|YP_005921011.1| - 0.089 12.8 0.0 16 5.5 0.0 2.3 1 1 1 2 2 2 0 Dynamin family MOEP19 PF16005.5 gi|386002712|ref|YP_005921011.1| - 0.093 12.7 0.0 6.9 6.8 0.0 2.2 2 0 0 2 2 2 0 KH-like RNA-binding domain NACHT PF05729.12 gi|386002712|ref|YP_005921011.1| - 0.12 12.3 0.0 0.42 10.5 0.0 1.8 2 0 0 2 2 2 0 NACHT domain TniB PF05621.11 gi|386002712|ref|YP_005921011.1| - 0.13 11.7 0.0 3.1 7.2 0.0 2.5 2 1 1 3 3 3 0 Bacterial TniB protein ABC_tran PF00005.27 gi|386002712|ref|YP_005921011.1| - 0.17 12.4 0.0 0.24 11.9 0.0 1.3 1 1 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|386002712|ref|YP_005921011.1| - 0.2 12.0 0.0 0.29 11.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain DUF2073 PF09846.9 gi|386002713|ref|YP_005921012.1| - 9.9e-44 147.5 3.5 1.1e-43 147.3 3.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF2072 PF09845.9 gi|386002714|ref|YP_005921013.1| - 2.5e-27 95.7 0.1 4.2e-26 91.8 0.1 2.0 1 1 0 1 1 1 1 Zn-ribbon containing protein Reo_sigmaC PF04582.12 gi|386002716|ref|YP_005921015.1| - 0.015 15.5 0.0 0.027 14.7 0.0 1.4 1 0 0 1 1 1 0 Reovirus sigma C capsid protein C-terminal domain DUF953 PF06110.11 gi|386002717|ref|YP_005921016.1| - 0.15 11.7 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Rhodanese PF00581.20 gi|386002718|ref|YP_005921017.1| - 2.8e-16 60.0 0.0 4.9e-11 43.1 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain CitMHS PF03600.16 gi|386002719|ref|YP_005921018.1| - 1.8e-47 162.0 30.7 4.4e-47 160.7 30.7 1.7 1 1 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 gi|386002719|ref|YP_005921018.1| - 1.5e-20 72.8 0.9 1.7e-09 37.4 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 gi|386002719|ref|YP_005921018.1| - 5.2e-18 65.3 33.4 7.3e-10 38.5 15.3 2.6 3 0 0 3 3 3 2 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|386002720|ref|YP_005921019.1| - 1.1e-58 198.9 69.1 2.2e-45 155.1 37.3 1.9 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.21 gi|386002720|ref|YP_005921019.1| - 2.7e-17 62.3 0.1 2.9e-10 39.8 0.0 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 gi|386002720|ref|YP_005921019.1| - 2.5e-15 56.5 28.5 1.3e-11 44.2 10.8 2.4 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region MttA_Hcf106 PF02416.16 gi|386002720|ref|YP_005921019.1| - 0.8 9.1 0.0 0.8 9.1 0.0 2.7 3 0 0 3 3 3 0 mttA/Hcf106 family Rotamase PF00639.21 gi|386002721|ref|YP_005921020.1| - 5.2e-29 101.0 0.1 6.4e-29 100.8 0.1 1.1 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_3 PF13616.6 gi|386002721|ref|YP_005921020.1| - 2.1e-28 99.2 0.2 2.7e-28 98.8 0.2 1.2 1 0 0 1 1 1 1 PPIC-type PPIASE domain Rotamase_2 PF13145.6 gi|386002721|ref|YP_005921020.1| - 5.2e-13 49.9 0.2 6e-13 49.7 0.2 1.0 1 0 0 1 1 1 1 PPIC-type PPIASE domain Ribo_biogen_C PF04034.13 gi|386002721|ref|YP_005921020.1| - 0.071 12.8 0.0 0.091 12.5 0.0 1.1 1 0 0 1 1 1 0 Ribosome biogenesis protein, C-terminal PAS_3 PF08447.12 gi|386002722|ref|YP_005921021.1| - 4.3e-41 139.1 0.1 3.1e-26 91.5 0.1 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|386002722|ref|YP_005921021.1| - 6.9e-26 90.5 0.0 2e-13 50.5 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|386002722|ref|YP_005921021.1| - 2.4e-24 85.5 0.0 2.5e-08 33.9 0.0 3.9 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.24 gi|386002722|ref|YP_005921021.1| - 1.7e-22 79.7 0.0 6.6e-22 77.8 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.10 gi|386002722|ref|YP_005921021.1| - 7.2e-20 71.3 1.2 1.7e-10 41.1 0.0 4.4 5 0 0 5 5 5 3 PAS fold PAS_8 PF13188.7 gi|386002722|ref|YP_005921021.1| - 4.4e-13 48.9 0.0 0.00019 21.4 0.0 3.7 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.6 gi|386002722|ref|YP_005921021.1| - 3.5e-07 30.6 0.0 9.2e-07 29.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_11 PF14598.6 gi|386002722|ref|YP_005921021.1| - 0.00034 20.7 0.0 0.027 14.6 0.0 2.8 3 0 0 3 3 3 1 PAS domain GAF PF01590.26 gi|386002722|ref|YP_005921021.1| - 0.0044 17.6 0.0 0.01 16.5 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.6 gi|386002722|ref|YP_005921021.1| - 0.059 14.0 0.0 0.15 12.7 0.0 1.7 1 0 0 1 1 1 0 PAS domain Inos-1-P_synth PF01658.17 gi|386002723|ref|YP_005921022.1| - 2.5e-32 111.4 0.0 8.5e-32 109.7 0.0 1.8 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|386002723|ref|YP_005921022.1| - 0.00016 21.2 0.0 0.00043 19.8 0.0 1.6 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase PDT PF00800.18 gi|386002724|ref|YP_005921023.1| - 1.5e-56 191.1 0.0 1.9e-56 190.8 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|386002724|ref|YP_005921023.1| - 2.1e-12 46.6 0.0 4.6e-12 45.5 0.0 1.6 1 0 0 1 1 1 1 ACT domain HMG-CoA_red PF00368.18 gi|386002725|ref|YP_005921024.1| - 2.1e-111 372.5 6.6 2.5e-111 372.3 6.6 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase GARS_C PF02843.16 gi|386002725|ref|YP_005921024.1| - 0.55 10.5 3.9 3.4 8.0 0.3 3.4 2 2 0 3 3 3 0 Phosphoribosylglycinamide synthetase, C domain DUF98 PF01947.16 gi|386002726|ref|YP_005921025.1| - 7.2e-30 103.9 0.0 1.3e-29 103.1 0.0 1.3 1 0 0 1 1 1 1 p-hydroxybenzoic acid synthase GHMP_kinases_N PF00288.26 gi|386002726|ref|YP_005921025.1| - 7.5e-07 29.3 0.3 2.5e-06 27.6 0.3 2.0 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|386002726|ref|YP_005921025.1| - 9.3e-07 29.1 0.2 3e-06 27.5 0.2 1.9 1 0 0 1 1 1 1 GHMP kinases C terminal UTRA PF07702.13 gi|386002726|ref|YP_005921025.1| - 0.025 14.4 0.3 0.047 13.5 0.3 1.5 1 0 0 1 1 1 0 UTRA domain Peptidase_M42 PF05343.14 gi|386002727|ref|YP_005921026.1| - 1.6e-103 345.7 0.2 1.9e-103 345.5 0.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|386002727|ref|YP_005921026.1| - 3.5e-10 39.9 0.2 6.5e-10 39.1 0.2 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|386002727|ref|YP_005921026.1| - 0.047 13.4 0.0 3.8 7.1 0.0 2.4 2 1 0 2 2 2 0 Peptidase family M28 Usp PF00582.26 gi|386002728|ref|YP_005921027.1| - 9.7e-37 126.6 7.1 1.1e-36 126.4 7.1 1.0 1 0 0 1 1 1 1 Universal stress protein family AAA_25 PF13481.6 gi|386002728|ref|YP_005921027.1| - 0.0069 16.0 0.8 0.0088 15.6 0.8 1.2 1 0 0 1 1 1 1 AAA domain UPF0172 PF03665.13 gi|386002728|ref|YP_005921027.1| - 0.014 15.5 0.2 0.017 15.2 0.2 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0172) Histone_HNS PF00816.21 gi|386002728|ref|YP_005921027.1| - 0.025 15.4 0.1 0.043 14.6 0.1 1.4 1 0 0 1 1 1 0 H-NS histone family HK97-gp10_like PF04883.12 gi|386002728|ref|YP_005921027.1| - 0.063 14.3 0.2 0.12 13.4 0.2 1.5 1 0 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component CTD_bind PF04818.13 gi|386002728|ref|YP_005921027.1| - 0.077 13.8 0.0 0.13 13.1 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase II-binding domain. IF3_N PF05198.16 gi|386002728|ref|YP_005921027.1| - 0.14 12.4 0.7 18 5.7 0.1 2.7 1 1 1 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Usp PF00582.26 gi|386002729|ref|YP_005921028.1| - 2.3e-30 106.0 0.4 2.6e-30 105.8 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family AIRC PF00731.20 gi|386002730|ref|YP_005921029.1| - 4.8e-44 149.5 0.1 5.4e-44 149.4 0.1 1.0 1 0 0 1 1 1 1 AIR carboxylase TrmB PF01978.19 gi|386002730|ref|YP_005921029.1| - 0.034 14.0 0.1 3.4 7.6 0.1 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB CM_2 PF01817.21 gi|386002731|ref|YP_005921030.1| - 5e-13 49.2 3.5 5.8e-13 49.0 3.5 1.1 1 0 0 1 1 1 1 Chorismate mutase type II GHMP_kinases_N PF00288.26 gi|386002732|ref|YP_005921031.1| - 3.9e-12 46.2 5.2 6.4e-12 45.5 1.7 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|386002732|ref|YP_005921031.1| - 0.008 16.5 0.0 0.023 15.0 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal DUF3467 PF11950.8 gi|386002734|ref|YP_005921033.1| - 3.7e-15 55.9 0.0 4.3e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) FAD_oxidored PF12831.7 gi|386002735|ref|YP_005921034.1| - 1.2e-08 34.8 1.8 1.2e-08 34.8 1.8 1.9 2 0 0 2 2 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|386002735|ref|YP_005921034.1| - 5.1e-07 29.1 0.3 5.9e-06 25.6 0.0 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.17 gi|386002735|ref|YP_005921034.1| - 0.00012 21.4 0.2 0.015 14.5 0.0 3.0 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.19 gi|386002735|ref|YP_005921034.1| - 0.00027 20.3 0.2 0.00051 19.4 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|386002735|ref|YP_005921034.1| - 0.00056 18.7 0.4 0.00085 18.1 0.4 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|386002735|ref|YP_005921034.1| - 0.001 18.3 0.5 0.0039 16.3 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|386002735|ref|YP_005921034.1| - 0.0014 17.9 0.5 0.0062 15.8 0.2 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|386002735|ref|YP_005921034.1| - 0.0022 17.2 0.1 0.0022 17.2 0.1 2.0 2 0 0 2 2 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|386002735|ref|YP_005921034.1| - 0.0027 17.0 0.1 0.029 13.6 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|386002735|ref|YP_005921034.1| - 0.0032 16.4 0.8 0.014 14.3 0.0 1.9 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|386002735|ref|YP_005921034.1| - 0.021 15.0 0.1 0.021 15.0 0.1 2.9 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain DUF1424 PF07232.11 gi|386002735|ref|YP_005921034.1| - 0.033 13.2 0.0 0.043 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative rep protein (DUF1424) HicA_toxin PF07927.12 gi|386002736|ref|YP_005921035.1| - 5.7e-12 45.5 0.1 6.4e-12 45.3 0.1 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, HicB_lk_antitox PF15919.5 gi|386002737|ref|YP_005921036.1| - 0.0021 18.2 0.0 0.0023 18.0 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system NACHT PF05729.12 gi|386002739|ref|YP_005921038.1| - 2.5e-12 47.1 0.0 4.6e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_22 PF13401.6 gi|386002739|ref|YP_005921038.1| - 2.1e-05 24.8 0.0 0.00012 22.4 0.0 2.2 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|386002739|ref|YP_005921038.1| - 5.1e-05 23.7 0.0 0.00035 21.0 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|386002739|ref|YP_005921038.1| - 0.00048 20.5 0.0 0.0048 17.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|386002739|ref|YP_005921038.1| - 0.0012 19.2 0.0 0.0065 16.9 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|386002739|ref|YP_005921038.1| - 0.0019 18.7 0.0 0.0061 17.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|386002739|ref|YP_005921038.1| - 0.0061 16.0 0.0 0.019 14.4 0.0 1.7 1 1 0 1 1 1 1 Bacterial TniB protein ABC_tran PF00005.27 gi|386002739|ref|YP_005921038.1| - 0.011 16.3 0.0 0.024 15.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_25 PF13481.6 gi|386002739|ref|YP_005921038.1| - 0.012 15.2 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|386002739|ref|YP_005921038.1| - 0.042 13.6 0.0 0.071 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|386002739|ref|YP_005921038.1| - 0.05 13.3 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|386002739|ref|YP_005921038.1| - 0.051 13.3 0.0 0.08 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|386002739|ref|YP_005921038.1| - 0.062 12.6 0.1 0.29 10.4 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin DUF87 PF01935.17 gi|386002739|ref|YP_005921038.1| - 0.084 13.0 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Helicase HerA, central domain DUF2075 PF09848.9 gi|386002739|ref|YP_005921038.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) UvrD-helicase PF00580.21 gi|386002739|ref|YP_005921038.1| - 0.15 11.6 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.18 gi|386002739|ref|YP_005921038.1| - 0.17 11.6 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.15 gi|386002739|ref|YP_005921038.1| - 0.18 11.7 0.0 0.34 10.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain GvpD PF07088.11 gi|386002739|ref|YP_005921038.1| - 0.25 9.9 0.0 0.38 9.3 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein YhcG_C PF06250.11 gi|386002740|ref|YP_005921039.1| - 7.8e-61 204.4 0.0 1e-60 204.1 0.0 1.1 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DUF1016_N PF17761.1 gi|386002740|ref|YP_005921039.1| - 3.3e-16 59.7 0.2 5e-16 59.1 0.2 1.3 1 0 0 1 1 1 1 DUF1016 N-terminal domain HSDR_N_2 PF13588.6 gi|386002740|ref|YP_005921039.1| - 0.056 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Rnk_N PF14760.6 gi|386002740|ref|YP_005921039.1| - 0.1 13.1 0.8 0.31 11.6 0.8 1.9 1 0 0 1 1 1 0 Rnk N-terminus FtsJ PF01728.19 gi|386002741|ref|YP_005921040.1| - 1e-57 195.1 0.0 1.2e-57 194.9 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|386002741|ref|YP_005921040.1| - 3.5e-05 23.7 0.0 7.7e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386002741|ref|YP_005921040.1| - 8.7e-05 22.4 0.0 0.0029 17.4 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain NNMT_PNMT_TEMT PF01234.17 gi|386002741|ref|YP_005921040.1| - 0.002 17.4 0.0 0.19 10.9 0.0 2.1 2 0 0 2 2 2 2 NNMT/PNMT/TEMT family Methyltransf_25 PF13649.6 gi|386002741|ref|YP_005921040.1| - 0.0068 17.1 0.2 0.11 13.3 0.2 2.5 1 1 0 1 1 1 1 Methyltransferase domain PGM_PMM_I PF02878.16 gi|386002742|ref|YP_005921041.1| - 6.8e-26 90.6 0.0 9.9e-26 90.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|386002742|ref|YP_005921041.1| - 6.3e-18 65.3 0.0 1.3e-17 64.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|386002742|ref|YP_005921041.1| - 9.9e-16 58.0 0.0 1.7e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|386002742|ref|YP_005921041.1| - 5.2e-10 39.4 0.0 1.4e-09 37.9 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Glycos_transf_2 PF00535.26 gi|386002743|ref|YP_005921042.1| - 2.3e-15 56.8 0.0 3.4e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|386002743|ref|YP_005921042.1| - 1.1e-07 32.0 0.0 1.5e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|386002743|ref|YP_005921042.1| - 0.00028 21.4 0.0 0.00043 20.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 AA_permease_2 PF13520.6 gi|386002743|ref|YP_005921042.1| - 0.013 14.4 0.3 0.016 14.0 0.3 1.1 1 0 0 1 1 1 0 Amino acid permease NTP_transf_3 PF12804.7 gi|386002743|ref|YP_005921042.1| - 0.019 15.3 0.0 0.076 13.4 0.0 1.7 1 1 1 2 2 2 0 MobA-like NTP transferase domain Tetraspanin PF00335.20 gi|386002743|ref|YP_005921042.1| - 0.056 13.1 0.6 0.074 12.7 0.6 1.1 1 0 0 1 1 1 0 Tetraspanin family MFS_MOT1 PF16983.5 gi|386002743|ref|YP_005921042.1| - 0.12 12.8 0.4 0.35 11.3 0.4 1.8 2 0 0 2 2 2 0 Molybdate transporter of MFS superfamily NAD_binding_1 PF00175.21 gi|386002744|ref|YP_005921043.1| - 4.3e-12 46.6 0.0 6.9e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.9 gi|386002744|ref|YP_005921043.1| - 6.7e-10 38.6 2.5 1.3e-09 37.7 2.5 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|386002744|ref|YP_005921043.1| - 0.0045 17.3 0.0 0.0081 16.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Fer4_22 PF17179.4 gi|386002745|ref|YP_005921044.1| - 7.1e-28 97.3 7.6 7.1e-28 97.3 7.6 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386002745|ref|YP_005921044.1| - 3.2e-07 30.8 3.8 0.002 18.6 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386002745|ref|YP_005921044.1| - 1.8e-06 28.3 7.9 1.3e-05 25.5 8.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386002745|ref|YP_005921044.1| - 0.00081 19.5 14.3 0.009 16.1 3.9 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|386002745|ref|YP_005921044.1| - 0.00089 19.8 13.8 0.016 15.8 0.4 2.7 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386002745|ref|YP_005921044.1| - 0.001 19.2 11.0 0.14 12.3 1.6 2.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386002745|ref|YP_005921044.1| - 0.011 15.7 16.3 0.14 12.3 2.2 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4 PF00037.27 gi|386002745|ref|YP_005921044.1| - 0.077 12.8 20.3 0.3 11.0 3.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|386002745|ref|YP_005921044.1| - 0.093 12.9 4.0 3.8 7.7 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386002745|ref|YP_005921044.1| - 0.16 12.9 11.0 0.36 11.8 0.2 2.5 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|386002745|ref|YP_005921044.1| - 1.2 10.2 21.6 1.5 9.9 4.5 3.5 2 1 1 3 3 3 0 4Fe-4S binding domain Molybdopterin PF00384.22 gi|386002746|ref|YP_005921045.1| - 5.2e-82 276.1 0.0 6.1e-82 275.9 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|386002746|ref|YP_005921045.1| - 2.4e-30 104.8 0.0 5.1e-30 103.8 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|386002746|ref|YP_005921045.1| - 3.4e-17 62.2 0.6 7.4e-17 61.1 0.6 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain GLEYA PF10528.9 gi|386002752|ref|YP_005921051.1| - 0.066 13.6 0.0 0.67 10.4 0.1 2.3 2 0 0 2 2 2 0 GLEYA domain MMR_HSR1 PF01926.23 gi|386002753|ref|YP_005921052.1| - 2.5e-15 56.5 0.0 3.8e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|386002753|ref|YP_005921052.1| - 2.6e-12 46.5 0.1 1.3e-11 44.2 0.1 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|386002753|ref|YP_005921052.1| - 0.02 14.8 0.0 0.1 12.5 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase ABC_tran PF00005.27 gi|386002753|ref|YP_005921052.1| - 0.053 14.0 0.1 0.11 13.0 0.1 1.4 1 0 0 1 1 1 0 ABC transporter CLP1_P PF16575.5 gi|386002753|ref|YP_005921052.1| - 0.063 13.1 0.1 0.1 12.4 0.1 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Dynamin_N PF00350.23 gi|386002753|ref|YP_005921052.1| - 0.087 12.9 0.0 4.1 7.4 0.1 2.2 1 1 1 2 2 2 0 Dynamin family Roc PF08477.13 gi|386002753|ref|YP_005921052.1| - 0.16 12.2 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase GTP_EFTU PF00009.27 gi|386002753|ref|YP_005921052.1| - 0.16 11.5 0.0 4.1 6.9 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_21 PF13304.6 gi|386002753|ref|YP_005921052.1| - 0.17 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|386002753|ref|YP_005921052.1| - 0.18 11.5 0.0 0.4 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRPRB PF09439.10 gi|386002753|ref|YP_005921052.1| - 0.22 10.9 0.0 0.38 10.2 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|386002753|ref|YP_005921052.1| - 0.23 11.1 0.1 3.1 7.4 0.1 2.1 2 0 0 2 2 2 0 Ras family MS_channel PF00924.18 gi|386002754|ref|YP_005921053.1| - 2.5e-46 157.9 0.1 2.5e-46 157.9 0.1 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel NosD PF05048.13 gi|386002755|ref|YP_005921054.1| - 1.1e-53 182.0 41.8 1.4e-39 135.9 24.9 2.0 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|386002755|ref|YP_005921054.1| - 5.3e-38 130.4 62.7 1.4e-21 76.9 20.9 2.1 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|386002755|ref|YP_005921054.1| - 1.6e-06 27.7 27.8 3.3e-06 26.6 12.2 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.7 gi|386002755|ref|YP_005921054.1| - 0.023 14.5 23.1 0.23 11.2 4.0 3.1 2 1 1 3 3 3 0 Pectate lyase superfamily protein AAA PF00004.29 gi|386002756|ref|YP_005921055.1| - 4.5e-43 146.8 0.2 1.2e-42 145.5 0.0 1.8 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|386002756|ref|YP_005921055.1| - 1.7e-12 46.9 0.1 4.4e-12 45.6 0.1 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|386002756|ref|YP_005921055.1| - 4.7e-05 23.4 1.1 0.00028 20.9 0.1 2.7 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|386002756|ref|YP_005921055.1| - 5.6e-05 23.3 0.2 0.00022 21.4 0.0 2.1 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|386002756|ref|YP_005921055.1| - 9.4e-05 22.2 0.0 0.00029 20.6 0.0 1.8 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|386002756|ref|YP_005921055.1| - 0.00015 22.2 0.3 0.0012 19.2 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|386002756|ref|YP_005921055.1| - 0.00025 21.3 0.1 0.029 14.6 0.0 2.5 1 1 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|386002756|ref|YP_005921055.1| - 0.0017 17.6 0.0 0.0044 16.3 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_14 PF13173.6 gi|386002756|ref|YP_005921055.1| - 0.0037 17.3 0.0 0.012 15.7 0.0 1.8 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|386002756|ref|YP_005921055.1| - 0.0041 16.9 0.0 0.0088 15.8 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.6 gi|386002756|ref|YP_005921055.1| - 0.0064 16.9 0.2 0.14 12.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|386002756|ref|YP_005921055.1| - 0.01 16.4 0.4 0.045 14.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|386002756|ref|YP_005921055.1| - 0.01 15.2 0.1 0.021 14.2 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|386002756|ref|YP_005921055.1| - 0.015 15.7 0.0 0.03 14.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF3340 PF11818.8 gi|386002756|ref|YP_005921055.1| - 0.016 15.3 2.7 0.026 14.7 2.7 1.3 1 0 0 1 1 1 0 C-terminal domain of tail specific protease (DUF3340) Sigma54_activat PF00158.26 gi|386002756|ref|YP_005921055.1| - 0.017 14.9 0.0 0.092 12.5 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|386002756|ref|YP_005921055.1| - 0.02 14.4 0.0 0.04 13.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|386002756|ref|YP_005921055.1| - 0.021 15.1 0.1 0.092 13.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|386002756|ref|YP_005921055.1| - 0.031 14.4 0.1 0.1 12.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain TMF_TATA_bd PF12325.8 gi|386002756|ref|YP_005921055.1| - 0.036 14.3 5.9 0.098 12.9 5.9 1.7 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Sigma54_activ_2 PF14532.6 gi|386002756|ref|YP_005921055.1| - 0.04 14.0 0.2 0.35 11.0 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain PhoH PF02562.16 gi|386002756|ref|YP_005921055.1| - 0.046 13.2 0.0 0.16 11.4 0.0 1.9 2 0 0 2 2 1 0 PhoH-like protein AAA_30 PF13604.6 gi|386002756|ref|YP_005921055.1| - 0.051 13.3 0.0 0.15 11.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain SKA2 PF16740.5 gi|386002756|ref|YP_005921055.1| - 0.069 12.9 2.5 0.16 11.8 2.5 1.6 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 Parvo_NS1 PF01057.17 gi|386002756|ref|YP_005921055.1| - 0.074 12.1 0.2 0.18 10.9 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_24 PF13479.6 gi|386002756|ref|YP_005921055.1| - 0.09 12.5 0.1 0.2 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain Caldesmon PF02029.15 gi|386002756|ref|YP_005921055.1| - 0.1 11.3 2.7 0.15 10.8 2.7 1.2 1 0 0 1 1 1 0 Caldesmon AAA_11 PF13086.6 gi|386002756|ref|YP_005921055.1| - 0.11 12.3 1.5 1.4 8.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|386002756|ref|YP_005921055.1| - 0.17 11.4 1.2 1.1 8.8 0.1 2.3 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|386002756|ref|YP_005921055.1| - 0.27 11.6 0.1 0.27 11.6 0.1 2.1 2 2 0 2 2 2 0 AAA domain NRBF2 PF08961.10 gi|386002756|ref|YP_005921055.1| - 0.35 10.5 8.3 0.54 9.8 0.6 2.3 1 1 1 2 2 2 0 Nuclear receptor-binding factor 2, autophagy regulator ABC_tran PF00005.27 gi|386002756|ref|YP_005921055.1| - 0.36 11.4 1.3 0.76 10.3 0.0 2.1 2 1 0 2 2 2 0 ABC transporter CtIP_N PF10482.9 gi|386002756|ref|YP_005921055.1| - 0.58 10.2 9.2 0.27 11.3 2.9 2.3 1 1 1 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain Ax_dynein_light PF10211.9 gi|386002756|ref|YP_005921055.1| - 0.92 9.4 7.8 1.7 8.5 7.8 1.4 1 0 0 1 1 1 0 Axonemal dynein light chain FlaC_arch PF05377.11 gi|386002756|ref|YP_005921055.1| - 1.1 9.7 4.3 5 7.6 2.1 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) APG6_N PF17675.1 gi|386002756|ref|YP_005921055.1| - 1.4 9.4 8.5 2.5 8.6 8.5 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region bZIP_1 PF00170.21 gi|386002756|ref|YP_005921055.1| - 5.3 7.2 11.6 0.39 10.8 3.6 2.3 1 1 1 2 2 2 0 bZIP transcription factor AdoMet_Synthase PF01941.19 gi|386002757|ref|YP_005921056.1| - 6.9e-115 384.0 0.1 8.2e-115 383.8 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) bact-PGI_C PF10432.9 gi|386002757|ref|YP_005921056.1| - 0.0086 16.1 0.1 0.67 10.0 0.0 2.6 2 1 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal SIS domain Nup35_RRM_2 PF14605.6 gi|386002757|ref|YP_005921056.1| - 0.022 14.8 0.2 0.21 11.6 0.0 2.4 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif S-AdoMet_synt_N PF00438.20 gi|386002757|ref|YP_005921056.1| - 0.09 13.5 0.2 0.4 11.4 0.0 2.2 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain NolB PF17398.2 gi|386002757|ref|YP_005921056.1| - 0.12 12.8 0.0 0.45 10.9 0.0 1.9 2 0 0 2 2 2 0 Nodulation protein NolB DUF5611 PF18446.1 gi|386002758|ref|YP_005921057.1| - 1.2e-28 99.9 0.1 1.4e-28 99.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) Enolase_C PF00113.22 gi|386002759|ref|YP_005921058.1| - 6.2e-108 360.5 0.1 7.8e-108 360.2 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|386002759|ref|YP_005921058.1| - 3.3e-57 192.3 0.2 2.5e-56 189.4 0.0 2.1 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|386002759|ref|YP_005921058.1| - 5.7e-05 22.8 0.0 8.7e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|386002759|ref|YP_005921058.1| - 0.015 14.5 0.0 0.026 13.7 0.0 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus WD40 PF00400.32 gi|386002760|ref|YP_005921059.1| - 1.6e-118 383.1 24.5 3.4e-08 34.0 0.1 14.5 14 0 0 14 14 14 13 WD domain, G-beta repeat NB-ARC PF00931.22 gi|386002760|ref|YP_005921059.1| - 3.7e-35 121.3 0.0 5.6e-35 120.7 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain TIR_2 PF13676.6 gi|386002760|ref|YP_005921059.1| - 3.5e-30 105.0 0.0 3.2e-29 101.9 0.0 2.8 2 0 0 2 2 2 1 TIR domain APAF1_C PF17908.1 gi|386002760|ref|YP_005921059.1| - 5.3e-15 55.6 0.0 1.3e-14 54.3 0.0 1.7 1 0 0 1 1 1 1 APAF-1 helical domain Nucleoporin_N PF08801.11 gi|386002760|ref|YP_005921059.1| - 7.4e-15 54.6 0.0 0.02 13.6 0.0 6.0 1 1 4 6 6 6 6 Nup133 N terminal like ANAPC4_WD40 PF12894.7 gi|386002760|ref|YP_005921059.1| - 7.6e-15 55.0 8.6 1 9.7 0.0 8.5 2 2 8 11 11 11 5 Anaphase-promoting complex subunit 4 WD40 domain Nup160 PF11715.8 gi|386002760|ref|YP_005921059.1| - 1.4e-13 50.3 24.7 0.36 9.4 0.0 12.1 2 2 10 13 13 13 5 Nucleoporin Nup120/160 120_Rick_ant PF12574.8 gi|386002760|ref|YP_005921059.1| - 1.1e-11 44.4 2.2 0.56 9.4 0.0 8.2 1 1 9 11 11 11 3 120 KDa Rickettsia surface antigen Cytochrom_D1 PF02239.16 gi|386002760|ref|YP_005921059.1| - 5.4e-11 41.6 4.6 0.013 14.1 0.0 5.3 3 1 1 5 5 5 3 Cytochrome D1 heme domain Nudix_N PF12535.8 gi|386002760|ref|YP_005921059.1| - 4.3e-06 26.2 0.2 6.9 6.4 0.0 5.2 7 0 0 7 7 7 3 Hydrolase of X-linked nucleoside diphosphate N terminal DUF5570 PF17731.1 gi|386002760|ref|YP_005921059.1| - 7.5e-06 26.0 18.4 14 5.7 0.2 9.3 2 2 8 11 11 11 0 Family of unknown function (DUF5570) HIRA_B PF09453.10 gi|386002760|ref|YP_005921059.1| - 0.0011 18.8 0.0 2.8e+02 1.5 0.0 6.9 7 0 0 7 7 7 0 HIRA B motif TIR PF01582.20 gi|386002760|ref|YP_005921059.1| - 0.0078 16.0 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 TIR domain AAA_16 PF13191.6 gi|386002760|ref|YP_005921059.1| - 0.02 15.3 0.0 0.066 13.6 0.0 2.0 1 0 0 1 1 1 0 AAA ATPase domain DUF4597 PF15366.6 gi|386002760|ref|YP_005921059.1| - 0.036 13.8 1.0 77 3.1 0.0 5.6 8 1 0 8 8 7 0 Domain of unknown function (DUF4597) UN_NPL4 PF11543.8 gi|386002760|ref|YP_005921059.1| - 0.044 14.3 0.0 88 3.7 0.0 4.7 5 0 0 5 5 3 0 Nuclear pore localisation protein NPL4 RVT_thumb PF06817.14 gi|386002760|ref|YP_005921059.1| - 0.044 13.6 0.0 18 5.2 0.0 4.8 6 0 0 6 6 6 0 Reverse transcriptase thumb domain DUF488 PF04343.13 gi|386002761|ref|YP_005921060.1| - 3.7e-05 24.3 0.1 6e-05 23.6 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function, DUF488 DNA_topoisoIV PF00521.20 gi|386002762|ref|YP_005921061.1| - 1.7e-159 531.3 0.0 2.2e-159 531.0 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|386002762|ref|YP_005921061.1| - 3.7e-68 224.8 15.7 7.1e-16 57.4 0.3 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller FliT PF05400.13 gi|386002762|ref|YP_005921061.1| - 0.057 14.2 2.1 0.2 12.5 1.5 2.3 1 1 0 1 1 1 0 Flagellar protein FliT DNA_gyraseB PF00204.25 gi|386002763|ref|YP_005921062.1| - 5e-62 208.4 0.2 7.7e-62 207.8 0.2 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|386002763|ref|YP_005921062.1| - 3.4e-32 110.4 0.7 7.6e-32 109.3 0.7 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|386002763|ref|YP_005921062.1| - 9.4e-22 77.6 0.0 2.2e-21 76.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|386002763|ref|YP_005921062.1| - 7.6e-19 67.8 0.0 2.2e-18 66.4 0.0 1.8 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|386002763|ref|YP_005921062.1| - 0.004 17.0 0.0 0.0094 15.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OB_aCoA_assoc PF01796.17 gi|386002764|ref|YP_005921063.1| - 1.9e-19 69.4 0.0 2.7e-19 68.9 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|386002764|ref|YP_005921063.1| - 1.3e-12 47.3 2.2 2.3e-12 46.5 2.2 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-TFIIB PF13453.6 gi|386002764|ref|YP_005921063.1| - 0.049 13.0 0.8 2 7.8 0.0 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger FdhE PF04216.12 gi|386002764|ref|YP_005921063.1| - 0.06 13.2 0.1 0.076 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation TackOD1 PF18551.1 gi|386002764|ref|YP_005921063.1| - 0.12 12.0 0.4 0.17 11.6 0.4 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Auto_anti-p27 PF06677.12 gi|386002764|ref|YP_005921063.1| - 0.68 10.1 4.7 4.8 7.4 4.0 2.4 2 1 1 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Thiolase_N PF00108.23 gi|386002765|ref|YP_005921064.1| - 3.7e-27 95.3 0.0 5.9e-27 94.7 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|386002765|ref|YP_005921064.1| - 5.2e-12 45.5 0.2 1.5e-11 44.0 0.2 1.8 1 1 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|386002765|ref|YP_005921064.1| - 7e-07 29.1 8.4 5.9e-06 26.0 3.6 3.5 3 1 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|386002765|ref|YP_005921064.1| - 0.013 15.5 0.3 0.97 9.5 0.0 2.5 2 0 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|386002765|ref|YP_005921064.1| - 0.056 13.3 2.2 2.7 7.9 0.0 2.6 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 gi|386002766|ref|YP_005921065.1| - 1.6e-09 37.8 0.0 2.8e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|386002766|ref|YP_005921065.1| - 0.00013 21.7 0.0 0.0041 16.8 0.0 2.2 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|386002766|ref|YP_005921065.1| - 0.0022 17.4 0.1 0.0034 16.8 0.1 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 gi|386002766|ref|YP_005921065.1| - 0.093 12.6 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A synthase N terminal YAcAr PF10686.9 gi|386002767|ref|YP_005921066.1| - 0.044 13.7 0.0 0.15 12.0 0.0 1.8 2 0 0 2 2 2 0 YspA, cpYpsA-related SLOG family DUF5546 PF17700.1 gi|386002767|ref|YP_005921066.1| - 0.052 13.9 0.0 0.073 13.4 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5546) DUF126 PF01989.16 gi|386002767|ref|YP_005921066.1| - 0.091 12.6 0.1 4.4 7.2 0.0 2.3 2 0 0 2 2 2 0 Aconitase X swivel domain CarS-like PF01864.17 gi|386002768|ref|YP_005921067.1| - 2.7e-51 174.0 3.4 3e-51 173.9 3.4 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|386002768|ref|YP_005921067.1| - 4.6e-06 26.6 1.0 4.6e-06 26.6 1.0 1.9 2 0 0 2 2 2 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.6 gi|386002768|ref|YP_005921067.1| - 0.49 10.2 5.9 2 8.2 2.3 2.3 2 0 0 2 2 2 0 YMGG-like Gly-zipper MtrE PF04206.12 gi|386002769|ref|YP_005921068.1| - 2.3e-133 443.6 13.6 2.6e-133 443.4 13.6 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E DUF3899 PF13038.6 gi|386002769|ref|YP_005921068.1| - 0.061 13.8 0.5 0.061 13.8 0.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) MtrD PF04207.12 gi|386002770|ref|YP_005921069.1| - 6.5e-96 320.2 22.9 7.9e-96 320.0 22.9 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.13 gi|386002771|ref|YP_005921070.1| - 9.3e-99 329.8 29.7 1e-98 329.7 29.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C MtrB PF05440.12 gi|386002772|ref|YP_005921071.1| - 6e-35 119.5 0.0 6.5e-35 119.4 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrF PF09472.10 gi|386002772|ref|YP_005921071.1| - 0.031 13.7 1.0 0.19 11.2 1.0 2.0 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.14 gi|386002773|ref|YP_005921072.1| - 1.1e-83 279.1 1.5 1.5e-83 278.6 1.5 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|386002773|ref|YP_005921072.1| - 0.019 14.3 3.5 0.25 10.8 3.5 2.4 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrF PF09472.10 gi|386002774|ref|YP_005921073.1| - 1.1e-23 82.3 0.5 1.5e-23 81.9 0.5 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Syndecan PF01034.20 gi|386002774|ref|YP_005921073.1| - 0.00032 20.5 1.6 0.00046 20.1 1.6 1.2 1 0 0 1 1 1 1 Syndecan domain MtrG PF04210.13 gi|386002775|ref|YP_005921074.1| - 5.8e-31 106.1 0.9 6.6e-31 106.0 0.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G MtrH PF02007.18 gi|386002776|ref|YP_005921075.1| - 1.3e-130 434.9 1.8 1.5e-130 434.7 1.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit CxxCxxCC PF03692.15 gi|386002777|ref|YP_005921076.1| - 1.9e-12 47.7 0.0 3.5e-12 46.8 0.0 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF4287 PF14117.6 gi|386002777|ref|YP_005921076.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) Peptidase_S9 PF00326.21 gi|386002778|ref|YP_005921077.1| - 2.6e-44 151.3 0.0 3.8e-44 150.7 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|386002778|ref|YP_005921077.1| - 4.3e-10 39.6 0.2 8e-09 35.5 0.1 2.4 3 0 0 3 3 3 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|386002778|ref|YP_005921077.1| - 5.1e-10 39.3 0.0 3.4e-09 36.6 0.0 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|386002778|ref|YP_005921077.1| - 2.6e-08 33.4 0.0 2.4e-05 23.7 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|386002778|ref|YP_005921077.1| - 2.3e-05 25.1 5.2 5.6e-05 23.9 4.1 2.2 2 1 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|386002778|ref|YP_005921077.1| - 9e-05 22.2 2.3 0.013 15.1 1.1 2.7 2 1 1 3 3 3 2 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 gi|386002778|ref|YP_005921077.1| - 0.00073 19.5 1.3 1.6 8.6 0.2 3.2 3 0 0 3 3 3 2 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|386002778|ref|YP_005921077.1| - 0.0023 17.9 0.0 0.0048 16.8 0.0 1.5 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DPPIV_N PF00930.21 gi|386002778|ref|YP_005921077.1| - 0.0028 16.5 0.0 0.083 11.6 0.0 2.6 3 0 0 3 3 3 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Esterase PF00756.20 gi|386002778|ref|YP_005921077.1| - 0.012 15.3 0.0 0.026 14.2 0.0 1.5 2 0 0 2 2 2 0 Putative esterase AXE1 PF05448.12 gi|386002778|ref|YP_005921077.1| - 0.023 13.4 0.4 0.39 9.3 0.4 2.2 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) DUF5050 PF16472.5 gi|386002778|ref|YP_005921077.1| - 0.041 13.1 0.0 0.13 11.4 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF5050) Peptidase_M3 PF01432.20 gi|386002779|ref|YP_005921078.1| - 2.3e-16 60.1 7.8 2.3e-16 60.1 7.8 2.3 2 1 0 2 2 2 1 Peptidase family M3 RPAP3_C PF13877.6 gi|386002779|ref|YP_005921078.1| - 0.0056 17.2 1.8 0.78 10.3 0.1 4.3 3 2 0 3 3 3 1 Potential Monad-binding region of RPAP3 Aminotran_1_2 PF00155.21 gi|386002780|ref|YP_005921079.1| - 4.8e-57 193.8 0.0 5.4e-57 193.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|386002780|ref|YP_005921079.1| - 6.3e-07 29.0 0.0 9.1e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|386002780|ref|YP_005921079.1| - 1.6e-06 27.4 0.0 2.4e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|386002780|ref|YP_005921079.1| - 3.2e-05 22.6 0.0 6.7e-05 21.6 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Radical_SAM PF04055.21 gi|386002780|ref|YP_005921079.1| - 0.046 14.1 0.2 0.43 10.9 0.0 2.5 3 0 0 3 3 3 0 Radical SAM superfamily Alliinase_C PF04864.13 gi|386002780|ref|YP_005921079.1| - 0.061 12.2 0.0 0.081 11.8 0.0 1.1 1 0 0 1 1 1 0 Allinase EPSP_synthase PF00275.20 gi|386002780|ref|YP_005921079.1| - 0.14 10.8 0.0 0.27 9.9 0.0 1.4 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KAP_NTPase PF07693.14 gi|386002781|ref|YP_005921080.1| - 2.3e-58 198.0 2.6 1.7e-57 195.1 2.6 2.1 1 1 0 1 1 1 1 KAP family P-loop domain AAA_22 PF13401.6 gi|386002781|ref|YP_005921080.1| - 1.7e-08 34.8 0.0 1.4e-07 31.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|386002781|ref|YP_005921080.1| - 7.1e-05 22.1 0.0 0.00024 20.4 0.0 1.8 1 1 0 1 1 1 1 NB-ARC domain ATPase_2 PF01637.18 gi|386002781|ref|YP_005921080.1| - 7.3e-05 22.8 2.1 0.00025 21.0 2.1 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|386002781|ref|YP_005921080.1| - 9.4e-05 22.9 0.0 0.00027 21.4 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain ORC2 PF04084.14 gi|386002781|ref|YP_005921080.1| - 0.0024 16.9 0.0 0.0039 16.2 0.0 1.2 1 0 0 1 1 1 1 Origin recognition complex subunit 2 AAA PF00004.29 gi|386002781|ref|YP_005921080.1| - 0.004 17.6 1.1 0.046 14.1 1.1 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Elong_Iki1 PF10483.9 gi|386002781|ref|YP_005921080.1| - 0.0043 16.6 0.2 0.0078 15.8 0.2 1.3 1 0 0 1 1 1 1 Elongator subunit Iki1 NACHT PF05729.12 gi|386002781|ref|YP_005921080.1| - 0.0079 16.1 0.8 0.32 10.9 0.8 2.6 1 1 0 1 1 1 1 NACHT domain TniB PF05621.11 gi|386002781|ref|YP_005921080.1| - 0.0098 15.3 0.3 0.036 13.5 0.3 1.9 2 0 0 2 2 2 1 Bacterial TniB protein AAA_23 PF13476.6 gi|386002781|ref|YP_005921080.1| - 0.023 15.2 0.8 0.023 15.2 0.8 2.5 2 1 0 3 3 3 0 AAA domain Phage_min_cap2 PF06152.11 gi|386002781|ref|YP_005921080.1| - 0.065 12.1 0.1 0.095 11.6 0.1 1.2 1 0 0 1 1 1 0 Phage minor capsid protein 2 RNA_helicase PF00910.22 gi|386002781|ref|YP_005921080.1| - 0.07 13.5 0.1 5.5 7.4 0.0 2.7 2 0 0 2 2 2 0 RNA helicase PLU-1 PF08429.11 gi|386002781|ref|YP_005921080.1| - 0.084 12.0 0.6 0.26 10.4 0.1 2.1 2 0 0 2 2 2 0 PLU-1-like protein ABC_tran PF00005.27 gi|386002781|ref|YP_005921080.1| - 0.1 13.1 0.0 0.91 10.0 0.0 2.4 2 1 0 2 2 2 0 ABC transporter SMC_N PF02463.19 gi|386002781|ref|YP_005921080.1| - 0.12 11.8 0.1 0.78 9.1 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|386002781|ref|YP_005921080.1| - 0.13 12.1 0.0 0.31 10.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DNA_ligase_A_N PF04675.14 gi|386002781|ref|YP_005921080.1| - 1 9.7 3.5 1.3 9.3 0.3 2.4 2 1 0 2 2 2 0 DNA ligase N terminus NTP_transf_2 PF01909.23 gi|386002782|ref|YP_005921081.1| - 1.3e-14 54.2 0.1 1.7e-14 53.9 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|386002782|ref|YP_005921081.1| - 4.2e-12 46.0 0.0 5.4e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|386002782|ref|YP_005921081.1| - 0.0069 16.6 0.0 0.009 16.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm DUF5050 PF16472.5 gi|386002784|ref|YP_005921083.1| - 0.031 13.5 1.3 0.091 12.0 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF5050) PQQ_3 PF13570.6 gi|386002784|ref|YP_005921083.1| - 0.06 13.9 0.1 0.06 13.9 0.1 4.5 3 2 1 4 4 4 0 PQQ-like domain SBF PF01758.16 gi|386002785|ref|YP_005921084.1| - 5e-09 36.1 7.1 5e-09 36.1 7.1 2.1 1 1 1 2 2 2 2 Sodium Bile acid symporter family SBF_like PF13593.6 gi|386002785|ref|YP_005921084.1| - 7.5e-09 35.3 12.2 1.1e-07 31.5 4.3 2.1 2 0 0 2 2 2 2 SBF-like CPA transporter family (DUF4137) TRAM PF01938.20 gi|386002786|ref|YP_005921085.1| - 1.1e-13 50.9 0.5 1.2e-13 50.8 0.5 1.1 1 0 0 1 1 1 1 TRAM domain ABC_tran PF00005.27 gi|386002787|ref|YP_005921086.1| - 7.6e-34 117.2 0.0 1.1e-33 116.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|386002787|ref|YP_005921086.1| - 1.4e-08 34.5 0.1 7.6e-05 22.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|386002787|ref|YP_005921086.1| - 4.2e-05 23.2 0.2 8.6e-05 22.2 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|386002787|ref|YP_005921086.1| - 0.00027 20.9 0.0 0.021 14.6 0.1 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|386002787|ref|YP_005921086.1| - 0.0003 21.2 0.0 0.00059 20.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|386002787|ref|YP_005921086.1| - 0.00071 19.5 0.0 0.0016 18.4 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|386002787|ref|YP_005921086.1| - 0.0017 18.7 0.1 0.017 15.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|386002787|ref|YP_005921086.1| - 0.0028 17.2 0.2 0.22 11.1 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|386002787|ref|YP_005921086.1| - 0.0033 18.0 0.1 0.0069 16.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|386002787|ref|YP_005921086.1| - 0.011 15.1 0.3 4 6.7 0.1 2.2 2 0 0 2 2 2 0 KaiC AAA_30 PF13604.6 gi|386002787|ref|YP_005921086.1| - 0.014 15.1 0.0 0.031 14.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|386002787|ref|YP_005921086.1| - 0.021 15.0 0.3 0.24 11.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|386002787|ref|YP_005921086.1| - 0.025 14.2 1.2 0.26 10.9 0.2 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.6 gi|386002787|ref|YP_005921086.1| - 0.029 14.1 0.0 0.095 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_7 PF12775.7 gi|386002787|ref|YP_005921086.1| - 0.042 13.4 0.0 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|386002787|ref|YP_005921086.1| - 0.066 13.3 0.1 0.19 11.8 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|386002787|ref|YP_005921086.1| - 0.07 12.9 0.0 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Rad17 PF03215.15 gi|386002787|ref|YP_005921086.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_13 PF13166.6 gi|386002787|ref|YP_005921086.1| - 0.11 11.1 0.0 0.61 8.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|386002787|ref|YP_005921086.1| - 0.12 11.5 0.5 0.21 10.7 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain ABC_ATPase PF09818.9 gi|386002787|ref|YP_005921086.1| - 0.13 11.0 0.2 0.24 10.1 0.2 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class NACHT PF05729.12 gi|386002787|ref|YP_005921086.1| - 0.15 12.0 0.2 0.53 10.2 0.1 1.9 2 0 0 2 2 2 0 NACHT domain MacB_PCD PF12704.7 gi|386002788|ref|YP_005921087.1| - 4.9e-17 62.9 2.5 7.3e-17 62.4 2.5 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|386002788|ref|YP_005921087.1| - 2.7e-15 56.6 7.0 8.9e-15 54.9 2.1 3.1 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|386002789|ref|YP_005921088.1| - 1.1e-11 45.5 3.5 1.1e-11 45.5 3.5 1.6 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|386002789|ref|YP_005921088.1| - 1.2e-11 44.9 0.6 1.2e-11 44.9 0.6 3.2 3 0 0 3 3 3 1 FtsX-like permease family Sigma_reg_N PF13800.6 gi|386002789|ref|YP_005921088.1| - 0.29 11.5 4.5 0.57 10.5 0.0 2.9 3 0 0 3 3 3 0 Sigma factor regulator N-terminal DeoC PF01791.9 gi|386002790|ref|YP_005921089.1| - 3.7e-58 196.9 0.0 4.3e-58 196.7 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|386002790|ref|YP_005921089.1| - 0.00045 19.9 0.0 0.00064 19.4 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.17 gi|386002790|ref|YP_005921089.1| - 0.11 11.9 0.0 9.4 5.5 0.0 2.4 2 0 0 2 2 2 0 Thiamine monophosphate synthase SIMPL PF04402.14 gi|386002791|ref|YP_005921090.1| - 2.2e-48 165.4 2.7 2.6e-48 165.2 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF473 PF04322.12 gi|386002792|ref|YP_005921091.1| - 2.2e-41 140.4 0.0 2.5e-41 140.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.9 gi|386002793|ref|YP_005921092.1| - 1.8e-49 168.6 0.1 2.1e-49 168.4 0.1 1.0 1 0 0 1 1 1 1 PAC2 family DUF726 PF05277.12 gi|386002793|ref|YP_005921092.1| - 0.039 12.9 0.0 0.052 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Glutaredoxin PF00462.24 gi|386002794|ref|YP_005921093.1| - 7.8e-12 45.2 0.0 1.2e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|386002794|ref|YP_005921093.1| - 0.00062 20.0 0.0 0.00077 19.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_3 PF13417.6 gi|386002794|ref|YP_005921093.1| - 0.0012 19.2 0.0 0.0015 18.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|386002794|ref|YP_005921093.1| - 0.014 15.7 0.0 0.016 15.5 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|386002794|ref|YP_005921093.1| - 0.14 12.6 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) FeThRed_B PF02943.15 gi|386002795|ref|YP_005921094.1| - 4.5e-26 90.9 0.1 6.5e-26 90.4 0.1 1.2 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.15 gi|386002795|ref|YP_005921094.1| - 0.0042 16.6 0.6 0.01 15.4 0.6 1.7 1 0 0 1 1 1 1 RecR protein zf-C4H2 PF10146.9 gi|386002795|ref|YP_005921094.1| - 0.0062 16.9 0.0 0.0077 16.6 0.0 1.2 1 0 0 1 1 1 1 Zinc finger-containing protein E1-E2_ATPase PF00122.20 gi|386002796|ref|YP_005921095.1| - 6.1e-59 198.6 1.8 1.5e-58 197.3 1.8 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|386002796|ref|YP_005921095.1| - 1.5e-45 156.0 4.3 3.4e-45 154.9 4.3 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|386002796|ref|YP_005921095.1| - 5.8e-32 109.9 3.4 1.4e-16 60.6 0.1 3.0 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|386002796|ref|YP_005921095.1| - 0.0011 18.7 0.2 0.021 14.6 0.1 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|386002796|ref|YP_005921095.1| - 0.03 14.7 0.0 0.19 12.1 0.0 2.2 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase PEP_hydrolase PF09370.10 gi|386002796|ref|YP_005921095.1| - 0.039 13.2 0.9 0.095 11.9 0.1 1.9 2 0 0 2 2 2 0 Phosphoenolpyruvate hydrolase-like YHS PF04945.13 gi|386002797|ref|YP_005921096.1| - 1.6e-20 72.9 2.9 1.7e-20 72.8 2.9 1.0 1 0 0 1 1 1 1 YHS domain ATPase-cat_bd PF12156.8 gi|386002797|ref|YP_005921096.1| - 0.0055 17.4 0.1 0.0059 17.3 0.1 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase Arc_trans_TRASH PF08394.10 gi|386002797|ref|YP_005921096.1| - 0.018 15.4 0.7 0.028 14.7 0.6 1.4 1 1 0 1 1 1 0 Archaeal TRASH domain GalKase_gal_bdg PF10509.9 gi|386002797|ref|YP_005921096.1| - 0.2 11.3 0.5 0.42 10.2 0.4 1.7 1 1 1 2 2 2 0 Galactokinase galactose-binding signature Pyr_redox_2 PF07992.14 gi|386002798|ref|YP_005921097.1| - 1.9e-47 162.0 0.1 2.9e-47 161.3 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|386002798|ref|YP_005921097.1| - 6.7e-24 84.3 0.7 2.4e-23 82.5 0.3 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|386002798|ref|YP_005921097.1| - 8e-15 55.2 0.1 2.1e-14 53.8 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|386002798|ref|YP_005921097.1| - 6.4e-09 35.5 0.0 9.4e-09 34.9 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|386002798|ref|YP_005921097.1| - 0.18 10.5 3.1 3.4 6.3 0.0 2.5 3 0 0 3 3 3 0 HI0933-like protein 3HCDH_N PF02737.18 gi|386002798|ref|YP_005921097.1| - 1.6 8.6 3.7 0.43 10.4 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dCMP_cyt_deam_1 PF00383.23 gi|386002799|ref|YP_005921098.1| - 1.6e-23 82.5 0.0 2e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|386002799|ref|YP_005921098.1| - 6.1e-21 74.6 0.0 7.6e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase SNAD4 PF18750.1 gi|386002799|ref|YP_005921098.1| - 0.15 12.2 0.1 0.26 11.4 0.1 1.4 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 4 RecR PF02132.15 gi|386002799|ref|YP_005921098.1| - 0.65 9.6 2.7 1.2 8.7 0.7 2.1 2 0 0 2 2 2 0 RecR protein WD40 PF00400.32 gi|386002800|ref|YP_005921099.1| - 4.7e-40 134.8 19.3 1.8e-09 38.0 0.8 7.8 7 0 0 7 7 7 6 WD domain, G-beta repeat DUF4365 PF14280.6 gi|386002800|ref|YP_005921099.1| - 5e-19 68.6 0.1 9e-19 67.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4365) Ras PF00071.22 gi|386002800|ref|YP_005921099.1| - 1.9e-17 63.3 0.0 3.7e-17 62.4 0.0 1.5 1 0 0 1 1 1 1 Ras family Roc PF08477.13 gi|386002800|ref|YP_005921099.1| - 4.6e-16 59.1 0.0 2.4e-15 56.8 0.0 2.3 2 0 0 2 2 1 1 Ras of Complex, Roc, domain of DAPkinase ANAPC4_WD40 PF12894.7 gi|386002800|ref|YP_005921099.1| - 1.6e-10 41.2 1.1 0.49 10.7 0.0 6.6 2 1 4 7 7 7 3 Anaphase-promoting complex subunit 4 WD40 domain Nup160 PF11715.8 gi|386002800|ref|YP_005921099.1| - 4.2e-07 29.0 3.3 0.0057 15.3 0.1 3.8 1 1 3 4 4 4 3 Nucleoporin Nup120/160 Arf PF00025.21 gi|386002800|ref|YP_005921099.1| - 8.1e-07 28.7 0.0 1.7e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 ADP-ribosylation factor family WD40_like PF17005.5 gi|386002800|ref|YP_005921099.1| - 2e-05 24.1 0.0 0.069 12.5 0.0 2.4 2 0 0 2 2 2 2 WD40-like domain PALB2_WD40 PF16756.5 gi|386002800|ref|YP_005921099.1| - 0.0016 17.5 5.5 0.18 10.7 0.1 4.0 2 1 4 6 6 6 2 Partner and localizer of BRCA2 WD40 domain zf-DNL PF05180.12 gi|386002800|ref|YP_005921099.1| - 0.016 15.1 0.2 0.04 13.9 0.2 1.6 1 0 0 1 1 1 0 DNL zinc finger PD40 PF07676.12 gi|386002800|ref|YP_005921099.1| - 0.066 13.2 5.8 30 4.7 0.1 4.2 4 0 0 4 4 4 0 WD40-like Beta Propeller Repeat AAA_24 PF13479.6 gi|386002800|ref|YP_005921099.1| - 0.18 11.5 0.0 0.37 10.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|386002800|ref|YP_005921099.1| - 0.21 11.6 0.4 0.57 10.2 0.4 1.7 1 0 0 1 1 1 0 Double zinc ribbon zf-GRF PF06839.12 gi|386002800|ref|YP_005921099.1| - 0.27 11.4 0.9 0.7 10.0 0.9 1.7 1 0 0 1 1 1 0 GRF zinc finger Methyltransf_11 PF08241.12 gi|386002801|ref|YP_005921100.1| - 9.9e-18 64.6 0.0 2.2e-17 63.5 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|386002801|ref|YP_005921100.1| - 2e-17 63.7 0.0 4.7e-17 62.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386002801|ref|YP_005921100.1| - 5.7e-17 61.9 0.0 8.8e-17 61.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002801|ref|YP_005921100.1| - 3.2e-12 47.0 0.0 5.1e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|386002801|ref|YP_005921100.1| - 1.3e-10 41.0 0.0 2.2e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_23 PF13489.6 gi|386002801|ref|YP_005921100.1| - 2.3e-10 40.6 0.0 2.9e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386002801|ref|YP_005921100.1| - 8.5e-10 38.4 0.0 1.3e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|386002801|ref|YP_005921100.1| - 0.00013 21.6 0.0 0.0002 20.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|386002801|ref|YP_005921100.1| - 0.00038 20.3 0.0 0.00053 19.8 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.11 gi|386002801|ref|YP_005921100.1| - 0.0053 15.8 0.0 0.0074 15.3 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.20 gi|386002801|ref|YP_005921100.1| - 0.0074 15.6 0.0 0.0094 15.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|386002801|ref|YP_005921100.1| - 0.018 14.1 0.0 0.023 13.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.11 gi|386002801|ref|YP_005921100.1| - 0.022 13.7 0.0 0.036 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TPMT PF05724.11 gi|386002801|ref|YP_005921100.1| - 0.03 14.0 0.0 0.17 11.5 0.0 2.1 2 1 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) NodS PF05401.11 gi|386002801|ref|YP_005921100.1| - 0.058 13.0 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) GCD14 PF08704.10 gi|386002801|ref|YP_005921100.1| - 0.2 11.3 0.0 0.28 10.8 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit OMPdecase PF00215.24 gi|386002802|ref|YP_005921101.1| - 1.2e-38 133.0 0.1 1.4e-38 132.8 0.1 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PEP_mutase PF13714.6 gi|386002802|ref|YP_005921101.1| - 0.075 12.5 3.3 0.8 9.1 0.6 2.2 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase DUF1633 PF07794.11 gi|386002802|ref|YP_005921101.1| - 0.09 10.9 0.1 0.099 10.8 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) Thiamine_BP PF01910.17 gi|386002803|ref|YP_005921102.1| - 1.4e-26 92.2 0.6 1.5e-26 92.1 0.6 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Sugar-bind PF04198.13 gi|386002803|ref|YP_005921102.1| - 0.051 12.7 0.3 0.099 11.8 0.3 1.5 1 1 0 1 1 1 0 Putative sugar-binding domain DnaJ_C PF01556.18 gi|386002804|ref|YP_005921103.1| - 7.1e-41 139.7 0.0 9.4e-41 139.3 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|386002804|ref|YP_005921103.1| - 5.8e-28 96.8 2.7 8.3e-28 96.3 2.7 1.2 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|386002804|ref|YP_005921103.1| - 2.3e-14 53.5 20.6 4.3e-14 52.6 20.6 1.5 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|386002804|ref|YP_005921103.1| - 0.00038 20.4 15.6 0.0045 16.9 2.8 3.5 1 1 2 3 3 3 3 Tryptophan RNA-binding attenuator protein inhibitory protein OrfB_Zn_ribbon PF07282.11 gi|386002804|ref|YP_005921103.1| - 0.17 11.8 7.3 0.45 10.5 1.6 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|386002804|ref|YP_005921103.1| - 0.92 9.5 9.4 1.6 8.8 0.8 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|386002804|ref|YP_005921103.1| - 6 7.0 14.3 2.5e+02 1.8 14.4 2.2 1 1 0 1 1 1 0 Double zinc ribbon DUF5351 PF17302.2 gi|386002804|ref|YP_005921103.1| - 8.3 6.7 25.5 2.8 8.2 0.5 4.6 4 0 0 4 4 4 0 Family of unknown function (DUF5351) HSP70 PF00012.20 gi|386002805|ref|YP_005921104.1| - 3.9e-223 742.0 12.2 7.5e-204 678.3 8.2 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.13 gi|386002805|ref|YP_005921104.1| - 3.5e-17 62.2 6.0 3.5e-17 62.2 6.0 3.0 3 1 0 3 3 3 1 MreB/Mbl protein StbA PF06406.11 gi|386002805|ref|YP_005921104.1| - 0.0027 17.0 0.5 0.48 9.6 0.1 2.4 1 1 1 2 2 2 2 StbA protein FGGY_C PF02782.16 gi|386002805|ref|YP_005921104.1| - 0.1 12.3 0.7 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain DUF547 PF04784.14 gi|386002805|ref|YP_005921104.1| - 0.11 12.5 0.2 2.2 8.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF547 M_domain PF12938.7 gi|386002805|ref|YP_005921104.1| - 0.16 11.8 4.4 0.33 10.7 4.4 1.4 1 0 0 1 1 1 0 M domain of GW182 DUF1090 PF06476.12 gi|386002805|ref|YP_005921104.1| - 0.74 10.0 15.6 0.45 10.6 12.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1090) Vfa1 PF08432.10 gi|386002805|ref|YP_005921104.1| - 0.78 10.0 14.1 1.3 9.3 14.1 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Phage_connect_1 PF05135.13 gi|386002805|ref|YP_005921104.1| - 1.2 9.7 4.6 2.3 8.8 1.2 2.7 1 1 1 2 2 2 0 Phage gp6-like head-tail connector protein DUF3347 PF11827.8 gi|386002805|ref|YP_005921104.1| - 3.7 7.7 9.4 6.6 6.9 9.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) GrpE PF01025.19 gi|386002806|ref|YP_005921105.1| - 5.1e-40 136.9 3.5 6.8e-40 136.4 3.5 1.3 1 0 0 1 1 1 1 GrpE Cpn60_TCP1 PF00118.24 gi|386002807|ref|YP_005921106.1| - 8.7e-166 552.3 10.3 9.9e-166 552.2 10.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF2000 PF09391.10 gi|386002807|ref|YP_005921106.1| - 0.12 12.3 0.7 5.3 7.0 0.0 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF2000) Inj_translocase PF16928.5 gi|386002807|ref|YP_005921106.1| - 0.12 11.8 0.3 3.6 7.0 0.0 2.5 1 1 0 2 2 2 0 DNA/protein translocase of phage P22 injectosome PBP_like_2 PF12849.7 gi|386002808|ref|YP_005921107.1| - 4.1e-36 125.1 0.1 1.1e-35 123.7 0.1 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|386002808|ref|YP_005921107.1| - 2.3e-13 49.7 0.1 3.5e-13 49.1 0.1 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|386002808|ref|YP_005921107.1| - 4.9e-08 33.0 0.0 0.0073 16.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|386002808|ref|YP_005921107.1| - 0.035 13.5 0.0 0.056 12.8 0.0 1.4 1 0 0 1 1 1 0 LysR substrate binding domain SBP_bac_6 PF13343.6 gi|386002808|ref|YP_005921107.1| - 0.17 11.3 0.0 0.41 10.0 0.0 1.6 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 gi|386002809|ref|YP_005921108.1| - 4.4e-32 111.4 0.0 6.1e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386002809|ref|YP_005921108.1| - 2.9e-14 53.6 0.0 3.4e-07 30.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|386002809|ref|YP_005921108.1| - 4.1e-06 26.4 0.1 0.00011 21.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|386002809|ref|YP_005921108.1| - 8.8e-05 23.0 0.0 0.00032 21.1 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_15 PF13175.6 gi|386002809|ref|YP_005921108.1| - 0.00017 21.4 0.0 0.00029 20.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|386002809|ref|YP_005921108.1| - 0.00022 21.5 0.0 0.00074 19.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|386002809|ref|YP_005921108.1| - 0.00027 20.9 0.0 0.00067 19.6 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 gi|386002809|ref|YP_005921108.1| - 0.0012 18.8 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|386002809|ref|YP_005921108.1| - 0.0014 18.3 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|386002809|ref|YP_005921108.1| - 0.0016 19.0 0.3 0.0034 17.9 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|386002809|ref|YP_005921108.1| - 0.0046 17.4 0.0 0.062 13.7 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|386002809|ref|YP_005921108.1| - 0.0052 17.0 0.0 0.0087 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|386002809|ref|YP_005921108.1| - 0.015 15.8 0.0 0.041 14.4 0.0 1.7 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|386002809|ref|YP_005921108.1| - 0.019 14.6 0.0 0.053 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|386002809|ref|YP_005921108.1| - 0.025 14.8 0.0 0.57 10.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|386002809|ref|YP_005921108.1| - 0.025 13.9 0.0 0.055 12.8 0.0 1.5 1 0 0 1 1 1 0 KaiC ABC_ATPase PF09818.9 gi|386002809|ref|YP_005921108.1| - 0.037 12.8 0.0 1.5 7.5 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|386002809|ref|YP_005921108.1| - 0.068 12.9 0.0 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|386002809|ref|YP_005921108.1| - 0.086 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_PrkA PF08298.11 gi|386002809|ref|YP_005921108.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_24 PF13479.6 gi|386002809|ref|YP_005921108.1| - 0.14 11.8 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|386002809|ref|YP_005921108.1| - 0.18 10.4 0.0 0.29 9.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain PhoU PF01895.19 gi|386002810|ref|YP_005921109.1| - 3.7e-44 149.1 7.1 7.3e-22 77.6 2.5 2.1 2 0 0 2 2 2 2 PhoU domain TBCA PF02970.16 gi|386002810|ref|YP_005921109.1| - 0.0051 17.1 1.2 0.0051 17.1 1.2 1.8 2 0 0 2 2 2 1 Tubulin binding cofactor A Cdh1_DBD_1 PF18196.1 gi|386002810|ref|YP_005921109.1| - 0.079 13.3 2.4 0.26 11.6 0.2 2.3 2 1 0 2 2 2 0 Chromodomain helicase DNA-binding domain 1 DUF5394 PF17372.2 gi|386002810|ref|YP_005921109.1| - 0.15 11.6 3.6 0.24 10.9 3.6 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5394) PhoU PF01895.19 gi|386002811|ref|YP_005921110.1| - 2.1e-24 85.8 10.4 1.2e-19 70.6 3.8 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|386002811|ref|YP_005921110.1| - 5e-06 26.3 0.1 7e-05 22.6 0.0 2.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin RTX_C PF08339.10 gi|386002811|ref|YP_005921110.1| - 0.024 14.7 0.2 0.068 13.2 0.2 1.7 1 0 0 1 1 1 0 RTX C-terminal domain FliL PF03748.14 gi|386002811|ref|YP_005921110.1| - 0.035 14.7 0.2 0.79 10.3 0.0 2.8 2 1 1 3 3 3 0 Flagellar basal body-associated protein FliL Endonuclease_5 PF04493.14 gi|386002812|ref|YP_005921111.1| - 4e-54 183.3 0.0 4.8e-54 183.0 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DNA_binding_1 PF01035.20 gi|386002813|ref|YP_005921112.1| - 6e-27 93.6 0.0 8.5e-27 93.1 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4 PF04545.16 gi|386002813|ref|YP_005921112.1| - 0.005 16.3 0.0 0.0086 15.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Metallophos_2 PF12850.7 gi|386002814|ref|YP_005921113.1| - 4.9e-23 82.1 0.0 5.6e-23 81.9 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|386002814|ref|YP_005921113.1| - 8.4e-06 26.4 2.3 0.00058 20.4 0.1 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase ABC_tran_CTD PF16326.5 gi|386002815|ref|YP_005921114.1| - 0.018 15.3 5.4 1.3 9.3 0.2 2.6 2 1 1 3 3 3 0 ABC transporter C-terminal domain CLZ PF16526.5 gi|386002815|ref|YP_005921114.1| - 0.09 13.1 3.1 0.65 10.4 0.2 2.4 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF1474 PF07342.11 gi|386002815|ref|YP_005921114.1| - 0.11 13.1 0.0 0.18 12.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1474) ZapB PF06005.12 gi|386002815|ref|YP_005921114.1| - 0.12 12.9 1.8 0.31 11.5 1.2 2.0 1 1 1 2 2 2 0 Cell division protein ZapB DUF4140 PF13600.6 gi|386002815|ref|YP_005921114.1| - 0.25 11.8 2.6 0.76 10.2 0.3 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4430 PF14478.6 gi|386002816|ref|YP_005921115.1| - 0.0063 17.1 0.0 0.016 15.8 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4430) Orn_Arg_deC_N PF02784.16 gi|386002817|ref|YP_005921116.1| - 1.4e-40 139.2 0.0 2e-40 138.7 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Arg_decarb_HB PF17810.1 gi|386002817|ref|YP_005921116.1| - 9.9e-20 70.6 0.9 9.9e-20 70.6 0.9 1.7 2 0 0 2 2 2 1 Arginine decarboxylase helical bundle domain DUF2181 PF10223.9 gi|386002817|ref|YP_005921116.1| - 0.13 11.7 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2181) DS PF01916.17 gi|386002818|ref|YP_005921117.1| - 9.2e-92 307.3 0.0 1.1e-91 307.1 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase PRTase_1 PF11202.8 gi|386002818|ref|YP_005921117.1| - 0.17 11.1 0.0 0.34 10.1 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase (PRTase) Methylase_S PF01420.19 gi|386002820|ref|YP_005921119.1| - 1e-12 48.6 4.5 5.6e-07 29.9 0.1 2.4 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain LigT_PEase PF02834.16 gi|386002820|ref|YP_005921119.1| - 0.075 13.2 0.0 0.21 11.8 0.0 1.7 1 0 0 1 1 1 0 LigT like Phosphoesterase N6_Mtase PF02384.16 gi|386002821|ref|YP_005921120.1| - 7.6e-39 133.8 0.0 1.5e-38 132.9 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase HSDR_N_2 PF13588.6 gi|386002821|ref|YP_005921120.1| - 9.7e-16 57.7 0.0 2.7e-15 56.3 0.0 1.8 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.18 gi|386002821|ref|YP_005921120.1| - 5.6e-08 32.7 0.0 3.4e-07 30.2 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|386002821|ref|YP_005921120.1| - 0.044 13.6 0.0 0.41 10.4 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain DUF2080 PF09853.9 gi|386002822|ref|YP_005921121.1| - 1.3e-08 34.4 0.1 1.5e-08 34.3 0.1 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) MazE_antitoxin PF04014.18 gi|386002822|ref|YP_005921121.1| - 0.04 13.9 0.0 0.069 13.1 0.0 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin DDE_Tnp_1 PF01609.21 gi|386002823|ref|YP_005921122.1| - 3.3e-19 69.4 0.3 1.1e-18 67.7 0.3 1.8 1 1 0 1 1 1 1 Transposase DDE domain SWIM PF04434.17 gi|386002823|ref|YP_005921122.1| - 1.5e-05 24.6 0.1 3e-05 23.6 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger Ribosomal_L27e PF01777.18 gi|386002823|ref|YP_005921122.1| - 0.038 14.3 0.9 0.15 12.5 0.1 2.3 2 0 0 2 2 2 0 Ribosomal L27e protein family DUF740 PF05340.12 gi|386002823|ref|YP_005921122.1| - 0.13 11.0 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF740) ThrE PF06738.12 gi|386002823|ref|YP_005921122.1| - 0.21 10.9 0.0 0.37 10.1 0.0 1.4 1 0 0 1 1 1 0 Putative threonine/serine exporter DUF2589 PF11655.8 gi|386002824|ref|YP_005921123.1| - 1.2e-26 93.8 0.0 1.6e-26 93.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2589) PI3K_P85_iSH2 PF16454.5 gi|386002825|ref|YP_005921124.1| - 0.031 13.9 0.1 0.07 12.7 0.1 1.5 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF2777 PF10949.8 gi|386002825|ref|YP_005921124.1| - 0.14 11.8 0.3 4.4 6.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2777) TMEM191C PF15194.6 gi|386002826|ref|YP_005921125.1| - 0.024 14.8 0.0 0.044 14.0 0.0 1.4 1 0 0 1 1 1 0 TMEM191C family DcrB PF08786.11 gi|386002827|ref|YP_005921126.1| - 1.9e-06 28.0 0.0 3e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 DcrB PsbP PF01789.16 gi|386002827|ref|YP_005921126.1| - 5.6e-06 26.6 0.0 3.5e-05 24.0 0.0 1.9 1 1 0 1 1 1 1 PsbP DUF4946 PF16304.5 gi|386002827|ref|YP_005921126.1| - 0.043 13.5 0.2 0.08 12.6 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4946) Ion_trans_2 PF07885.16 gi|386002828|ref|YP_005921127.1| - 0.062 13.3 1.1 0.12 12.3 1.1 1.6 1 1 0 1 1 1 0 Ion channel Trypsin_2 PF13365.6 gi|386002829|ref|YP_005921128.1| - 3.1e-30 106.1 0.1 1.1e-29 104.3 0.1 1.8 1 1 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|386002829|ref|YP_005921128.1| - 4.4e-14 52.8 0.0 4.6e-10 39.7 0.0 2.1 2 0 0 2 2 2 2 Trypsin Peptidase_S46 PF10459.9 gi|386002829|ref|YP_005921128.1| - 1.4e-06 27.3 0.1 0.0058 15.3 0.0 3.0 3 0 0 3 3 3 3 Peptidase S46 TPR_2 PF07719.17 gi|386002829|ref|YP_005921128.1| - 0.016 15.3 0.1 0.064 13.4 0.0 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat Peptidase_S29 PF02907.15 gi|386002829|ref|YP_005921128.1| - 0.021 14.6 0.0 0.051 13.3 0.0 1.5 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease DUF31 PF01732.16 gi|386002829|ref|YP_005921128.1| - 0.15 11.6 2.0 28 4.1 0.1 3.1 1 1 1 3 3 3 0 Putative peptidase (DUF31) CooT PF10133.9 gi|386002831|ref|YP_005921130.1| - 1.8e-10 41.0 0.9 1.9e-10 40.9 0.9 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT Prefoldin_2 PF01920.20 gi|386002832|ref|YP_005921131.1| - 2.2e-24 85.5 16.3 2.4e-24 85.3 16.3 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF3014 PF11219.8 gi|386002832|ref|YP_005921131.1| - 0.0025 18.1 0.8 0.0032 17.7 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3014) Tnp_DNA_bind PF14706.6 gi|386002832|ref|YP_005921131.1| - 0.052 13.4 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 Transposase DNA-binding BLOC1_2 PF10046.9 gi|386002832|ref|YP_005921131.1| - 0.12 12.7 8.3 0.1 12.9 2.0 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CinA_KH PF18146.1 gi|386002832|ref|YP_005921131.1| - 0.13 12.4 2.3 0.51 10.5 0.1 2.3 1 1 1 2 2 2 0 Damage-inducible protein CinA KH domain Cep57_MT_bd PF06657.13 gi|386002832|ref|YP_005921131.1| - 0.17 12.4 10.4 0.19 12.2 1.5 2.3 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 LRRFIP PF09738.9 gi|386002832|ref|YP_005921131.1| - 0.21 11.1 8.8 0.27 10.7 8.8 1.1 1 0 0 1 1 1 0 LRRFIP family DUF724 PF05266.14 gi|386002832|ref|YP_005921131.1| - 0.26 11.1 7.8 0.3 10.9 7.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Prefoldin PF02996.17 gi|386002832|ref|YP_005921131.1| - 0.34 10.8 10.1 1.7 8.6 1.8 2.3 2 1 0 2 2 2 0 Prefoldin subunit DUF2968 PF11180.8 gi|386002832|ref|YP_005921131.1| - 0.42 10.2 15.1 0.89 9.2 6.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) YlqD PF11068.8 gi|386002832|ref|YP_005921131.1| - 1.1 9.6 13.5 2.6 8.4 2.2 2.1 2 0 0 2 2 2 0 YlqD protein DUF4763 PF15960.5 gi|386002832|ref|YP_005921131.1| - 2 7.6 13.1 0.4 10.0 3.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) PilO PF04350.13 gi|386002832|ref|YP_005921131.1| - 2.7 8.2 10.4 6.3 6.9 1.0 2.1 2 0 0 2 2 2 0 Pilus assembly protein, PilO FlxA PF14282.6 gi|386002832|ref|YP_005921131.1| - 3.1 7.8 20.3 2.1 8.4 9.6 2.2 2 0 0 2 2 2 0 FlxA-like protein JIP_LZII PF16471.5 gi|386002832|ref|YP_005921131.1| - 4.8 7.4 12.1 6.6 7.0 2.6 2.1 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II Spc24 PF08286.11 gi|386002832|ref|YP_005921131.1| - 8.3 6.7 8.9 7.9 6.8 3.3 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Seryl_tRNA_N PF02403.22 gi|386002832|ref|YP_005921131.1| - 8.7 6.6 12.9 4.6 7.5 3.2 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Pcc1 PF09341.10 gi|386002833|ref|YP_005921132.1| - 4.4e-08 33.2 0.4 5.1e-08 32.9 0.4 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 PKS_DE PF18369.1 gi|386002833|ref|YP_005921132.1| - 0.092 13.3 0.7 14 6.3 0.0 2.3 2 0 0 2 2 2 0 Polyketide synthase dimerisation element domain K_oxygenase PF13434.6 gi|386002834|ref|YP_005921133.1| - 0.0084 15.3 0.1 0.0096 15.1 0.1 1.1 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Oxidored_nitro PF00148.19 gi|386002834|ref|YP_005921133.1| - 0.0092 14.7 0.0 0.011 14.5 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DNA_RNApol_7kD PF03604.13 gi|386002835|ref|YP_005921134.1| - 2.5e-09 36.6 8.1 3.3e-09 36.3 8.1 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|386002835|ref|YP_005921134.1| - 2.3e-05 23.9 0.8 0.14 11.8 0.1 2.1 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|386002835|ref|YP_005921134.1| - 0.0002 20.6 0.3 0.0091 15.4 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|386002835|ref|YP_005921134.1| - 0.0011 19.0 0.5 0.0011 19.0 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|386002835|ref|YP_005921134.1| - 0.0015 18.0 1.6 0.0018 17.7 1.6 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|386002835|ref|YP_005921134.1| - 0.0019 18.1 2.9 0.004 17.0 2.9 1.6 1 1 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|386002835|ref|YP_005921134.1| - 0.0022 17.6 2.1 0.0044 16.7 2.1 1.5 1 1 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|386002835|ref|YP_005921134.1| - 0.0033 17.5 4.4 0.0059 16.7 4.3 1.5 1 1 0 1 1 1 1 Zinc ribbon domain Cys_rich_CPXG PF14255.6 gi|386002835|ref|YP_005921134.1| - 0.0063 16.4 1.6 0.052 13.4 0.2 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG DZR PF12773.7 gi|386002835|ref|YP_005921134.1| - 0.0095 15.9 1.1 0.013 15.5 1.1 1.3 1 1 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|386002835|ref|YP_005921134.1| - 0.013 15.5 4.0 0.19 11.7 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|386002835|ref|YP_005921134.1| - 0.016 15.1 3.7 0.39 10.7 3.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|386002835|ref|YP_005921134.1| - 0.016 15.3 0.9 0.019 15.1 0.9 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_9 PF14369.6 gi|386002835|ref|YP_005921134.1| - 0.018 15.3 1.3 0.028 14.7 1.3 1.3 1 0 0 1 1 1 0 zinc-ribbon zinc_ribbon_6 PF14599.6 gi|386002835|ref|YP_005921134.1| - 0.021 14.8 1.6 0.031 14.3 1.6 1.2 1 0 0 1 1 1 0 Zinc-ribbon DUF951 PF06107.11 gi|386002835|ref|YP_005921134.1| - 0.024 14.5 3.8 0.049 13.6 0.3 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) CpXC PF14353.6 gi|386002835|ref|YP_005921134.1| - 0.026 14.5 1.7 0.46 10.5 0.1 2.0 1 1 1 2 2 2 0 CpXC protein YacG PF03884.14 gi|386002835|ref|YP_005921134.1| - 0.028 14.1 0.6 2 8.2 0.1 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG TFIIS_C PF01096.18 gi|386002835|ref|YP_005921134.1| - 0.036 13.9 2.6 4.5 7.2 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS91 PF14319.6 gi|386002835|ref|YP_005921134.1| - 0.041 13.9 0.8 0.041 13.9 0.8 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Anti-TRAP PF15777.5 gi|386002835|ref|YP_005921134.1| - 0.053 13.5 0.1 0.055 13.4 0.1 1.1 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein C1_1 PF00130.22 gi|386002835|ref|YP_005921134.1| - 0.056 13.3 1.1 0.096 12.6 1.1 1.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2072 PF09845.9 gi|386002835|ref|YP_005921134.1| - 0.061 13.6 0.3 0.061 13.6 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein DUF3268 PF11672.8 gi|386002835|ref|YP_005921134.1| - 0.071 13.4 2.3 0.77 10.1 0.1 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain DNA_ligase_ZBD PF03119.16 gi|386002835|ref|YP_005921134.1| - 0.11 12.5 2.8 2.6 8.2 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2 PF00096.26 gi|386002835|ref|YP_005921134.1| - 0.14 12.6 3.1 8.2 7.1 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_15 PF17032.5 gi|386002835|ref|YP_005921134.1| - 0.22 12.3 4.4 0.46 11.3 4.4 1.4 1 1 1 2 2 2 0 zinc-ribbon family zf-CCHC_5 PF14787.6 gi|386002835|ref|YP_005921134.1| - 0.31 10.8 4.0 2.9 7.7 0.2 2.1 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Zn_ribbon_SprT PF17283.2 gi|386002835|ref|YP_005921134.1| - 0.33 10.9 9.7 5.7 6.9 9.1 2.2 1 1 1 2 2 2 0 SprT-like zinc ribbon domain DiS_P_DiS PF06750.13 gi|386002835|ref|YP_005921134.1| - 0.35 11.0 2.5 9.9 6.4 0.1 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_10 PF10058.9 gi|386002835|ref|YP_005921134.1| - 0.36 10.6 4.7 15 5.4 4.2 2.3 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein UPF0547 PF10571.9 gi|386002835|ref|YP_005921134.1| - 2.1 8.5 6.3 9.4 6.4 6.3 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Ribosomal_L37ae PF01780.19 gi|386002836|ref|YP_005921135.1| - 7.5e-32 109.3 4.9 8.6e-32 109.1 4.9 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn-ribbon_8 PF09723.10 gi|386002836|ref|YP_005921135.1| - 0.00011 22.2 0.3 0.31 11.2 0.1 2.3 2 0 0 2 2 2 2 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|386002836|ref|YP_005921135.1| - 0.00035 20.4 0.6 0.00055 19.8 0.6 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HalOD2 PF18547.1 gi|386002836|ref|YP_005921135.1| - 0.0016 18.3 4.3 0.0029 17.5 3.2 1.9 1 1 1 2 2 2 1 Halobacterial output domain 2 TF_Zn_Ribbon PF08271.12 gi|386002836|ref|YP_005921135.1| - 0.0028 17.1 1.3 0.0045 16.5 1.3 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding DUF4379 PF14311.6 gi|386002836|ref|YP_005921135.1| - 0.004 17.5 1.3 0.2 12.1 0.1 2.3 2 0 0 2 2 2 1 Probable Zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|386002836|ref|YP_005921135.1| - 0.007 16.3 2.4 0.064 13.2 0.5 2.4 2 0 0 2 2 2 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|386002836|ref|YP_005921135.1| - 0.0074 16.3 4.2 0.014 15.5 4.2 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Elf1 PF05129.13 gi|386002836|ref|YP_005921135.1| - 0.013 15.5 0.3 0.027 14.5 0.3 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.7 gi|386002836|ref|YP_005921135.1| - 0.015 15.3 4.0 0.024 14.6 4.0 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain IBR PF01485.21 gi|386002836|ref|YP_005921135.1| - 0.015 15.5 0.1 0.021 15.0 0.1 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Zn_ribbon_SprT PF17283.2 gi|386002836|ref|YP_005921135.1| - 0.025 14.5 5.1 0.075 13.0 5.1 1.7 1 1 0 1 1 1 0 SprT-like zinc ribbon domain TFIIS_C PF01096.18 gi|386002836|ref|YP_005921135.1| - 0.03 14.2 2.5 1.4 8.8 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Auto_anti-p27 PF06677.12 gi|386002836|ref|YP_005921135.1| - 0.056 13.6 1.8 0.082 13.1 1.8 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rep_fac-A_C PF08646.10 gi|386002836|ref|YP_005921135.1| - 0.062 13.0 0.1 0.074 12.8 0.1 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Desulfoferrod_N PF06397.12 gi|386002836|ref|YP_005921135.1| - 0.075 12.7 3.0 1.7 8.3 0.2 2.3 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-H2C2_2 PF13465.6 gi|386002836|ref|YP_005921135.1| - 0.083 13.4 0.4 17 6.0 0.0 2.4 2 0 0 2 2 2 0 Zinc-finger double domain RPA_interact_C PF14768.6 gi|386002836|ref|YP_005921135.1| - 0.093 13.3 0.0 0.12 13.0 0.0 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal XPA_N PF01286.18 gi|386002836|ref|YP_005921135.1| - 0.11 12.6 0.3 16 5.6 0.0 2.2 2 0 0 2 2 2 0 XPA protein N-terminal Rad50_zn_hook PF04423.14 gi|386002836|ref|YP_005921135.1| - 0.17 11.7 0.1 0.36 10.7 0.1 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-C2H2 PF00096.26 gi|386002836|ref|YP_005921135.1| - 0.2 12.2 2.9 13 6.5 0.4 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_10 PF10058.9 gi|386002836|ref|YP_005921135.1| - 0.21 11.4 2.8 5.7 6.8 0.3 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_2 PF13240.6 gi|386002836|ref|YP_005921135.1| - 0.25 11.1 3.6 9.1 6.1 1.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|386002836|ref|YP_005921135.1| - 0.3 11.2 1.6 5.9 7.0 0.0 2.1 1 1 1 2 2 2 0 CpXC protein Prim_Zn_Ribbon PF08273.12 gi|386002836|ref|YP_005921135.1| - 0.43 10.9 9.9 1.9 8.8 9.9 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase RNase_PH PF01138.21 gi|386002837|ref|YP_005921136.1| - 7.2e-28 97.7 0.0 1.5e-27 96.7 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|386002837|ref|YP_005921136.1| - 4.1e-08 33.2 0.0 6.4e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|386002838|ref|YP_005921137.1| - 8.3e-34 116.9 0.0 1.2e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|386002838|ref|YP_005921137.1| - 1.1e-14 54.2 0.0 1.8e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|386002839|ref|YP_005921138.1| - 3.5e-09 36.9 0.1 7e-09 35.9 0.1 1.5 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|386002839|ref|YP_005921138.1| - 5.8e-07 29.8 0.1 1.5e-06 28.4 0.0 1.7 2 0 0 2 2 2 1 S1 RNA binding domain ECR1_N PF14382.6 gi|386002839|ref|YP_005921138.1| - 1.5e-06 27.9 0.2 5.4e-06 26.1 0.0 2.0 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region KH_1 PF00013.29 gi|386002839|ref|YP_005921138.1| - 1.8e-05 24.4 0.0 4.1e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|386002839|ref|YP_005921138.1| - 5.4e-05 22.9 0.0 0.00011 22.0 0.0 1.6 1 0 0 1 1 1 1 KH domain SBDS PF01172.18 gi|386002840|ref|YP_005921139.1| - 3.9e-24 84.6 0.0 7.2e-24 83.7 0.0 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|386002840|ref|YP_005921139.1| - 8.6e-20 70.9 0.0 1.4e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.26 gi|386002841|ref|YP_005921140.1| - 3.1e-58 196.4 0.4 4.1e-58 196.0 0.4 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|386002841|ref|YP_005921140.1| - 1.1e-14 53.8 0.5 4.1e-14 51.9 0.1 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|386002842|ref|YP_005921141.1| - 3.3e-14 53.0 0.1 4.7e-14 52.5 0.1 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.16 gi|386002843|ref|YP_005921142.1| - 1.7e-37 129.0 0.0 2e-37 128.8 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.19 gi|386002843|ref|YP_005921142.1| - 0.0003 21.1 0.0 0.00033 21.0 0.0 1.2 1 0 0 1 1 1 1 PHP domain RNA_binding PF01877.17 gi|386002844|ref|YP_005921143.1| - 8.7e-38 129.3 0.1 9.9e-38 129.1 0.1 1.0 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.17 gi|386002845|ref|YP_005921144.1| - 2.1e-83 278.7 7.3 2.4e-83 278.5 7.3 1.0 1 0 0 1 1 1 1 Ribosomal L15 DUF2114 PF09887.9 gi|386002847|ref|YP_005921146.1| - 1.9e-227 755.1 0.2 2.2e-227 754.9 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Borealin PF10512.9 gi|386002847|ref|YP_005921146.1| - 0.0099 15.8 0.1 0.018 15.0 0.1 1.4 1 0 0 1 1 1 1 Cell division cycle-associated protein 8 FAD_binding_3 PF01494.19 gi|386002848|ref|YP_005921147.1| - 2.9e-17 63.0 0.1 1.9e-06 27.4 0.0 3.1 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|386002848|ref|YP_005921147.1| - 3e-11 43.0 0.0 4.9e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|386002848|ref|YP_005921147.1| - 1.4e-09 38.1 0.7 0.0015 18.2 0.0 2.4 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|386002848|ref|YP_005921147.1| - 6.3e-08 32.2 0.2 3.3e-07 29.8 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|386002848|ref|YP_005921147.1| - 6.4e-07 29.5 0.0 1.8e-06 28.1 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|386002848|ref|YP_005921147.1| - 1.1e-05 24.7 0.2 1.8e-05 24.0 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|386002848|ref|YP_005921147.1| - 1.3e-05 24.1 0.2 0.00063 18.6 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|386002848|ref|YP_005921147.1| - 2.8e-05 23.4 0.0 0.0008 18.6 0.2 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|386002848|ref|YP_005921147.1| - 4.9e-05 23.8 0.1 0.0014 19.2 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|386002848|ref|YP_005921147.1| - 9.8e-05 21.4 0.1 0.099 11.5 0.1 3.0 2 1 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|386002848|ref|YP_005921147.1| - 0.00033 20.2 0.2 0.00042 19.8 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|386002848|ref|YP_005921147.1| - 0.0032 16.7 0.0 0.0056 16.0 0.0 1.3 1 0 0 1 1 1 1 Thi4 family TrkA_N PF02254.18 gi|386002848|ref|YP_005921147.1| - 0.01 16.1 0.0 0.02 15.1 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain Pyr_redox_3 PF13738.6 gi|386002848|ref|YP_005921147.1| - 0.019 14.2 0.0 0.07 12.4 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|386002848|ref|YP_005921147.1| - 0.057 13.3 0.1 0.091 12.6 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|386002848|ref|YP_005921147.1| - 0.059 12.7 0.1 0.1 11.8 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|386002848|ref|YP_005921147.1| - 0.062 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|386002848|ref|YP_005921147.1| - 0.1 13.1 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain ApbA PF02558.16 gi|386002848|ref|YP_005921147.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|386002848|ref|YP_005921147.1| - 0.23 11.0 0.0 0.37 10.3 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VWA PF00092.28 gi|386002849|ref|YP_005921148.1| - 1.1e-17 64.9 0.0 1.9e-17 64.1 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|386002849|ref|YP_005921148.1| - 1e-15 58.3 0.0 1.2e-14 54.8 0.1 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|386002849|ref|YP_005921148.1| - 3e-07 30.5 0.0 6e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain MCH PF02289.16 gi|386002850|ref|YP_005921149.1| - 1.3e-117 392.6 0.0 1.4e-117 392.4 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) URO-D PF01208.17 gi|386002850|ref|YP_005921149.1| - 0.18 10.9 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) Usp PF00582.26 gi|386002853|ref|YP_005921152.1| - 1.4e-35 122.9 3.8 1.5e-35 122.7 3.8 1.0 1 0 0 1 1 1 1 Universal stress protein family E3_binding PF02817.17 gi|386002853|ref|YP_005921152.1| - 0.0015 18.8 0.3 17 5.9 0.0 3.3 3 0 0 3 3 3 3 e3 binding domain DUF1930 PF09122.10 gi|386002854|ref|YP_005921153.1| - 0.11 12.4 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1930) DUF2281 PF10047.9 gi|386002856|ref|YP_005921155.1| - 3.1e-05 24.6 0.1 3.8e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2281) PemK_toxin PF02452.17 gi|386002857|ref|YP_005921156.1| - 1.7e-06 28.4 0.0 1.8e-06 28.3 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system TaqI_C PF12950.7 gi|386002859|ref|YP_005921158.1| - 7.5e-21 74.4 1.0 1.7e-20 73.3 0.2 2.1 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain Eco57I PF07669.11 gi|386002859|ref|YP_005921158.1| - 1.1e-15 58.0 0.0 2.5e-15 56.9 0.0 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.16 gi|386002859|ref|YP_005921158.1| - 4.4e-10 39.3 0.0 2.5e-07 30.3 0.0 2.6 2 1 0 2 2 2 2 N-6 DNA Methylase HSDR_N PF04313.14 gi|386002859|ref|YP_005921158.1| - 3.3e-07 30.5 0.0 0.00015 21.8 0.0 2.5 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.18 gi|386002859|ref|YP_005921158.1| - 0.0024 17.6 0.1 0.2 11.3 0.0 2.9 3 0 0 3 3 3 1 Putative RNA methylase family UPF0020 HSDR_N_2 PF13588.6 gi|386002859|ref|YP_005921158.1| - 0.0079 16.2 0.0 0.02 14.9 0.0 1.6 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Methylase_S PF01420.19 gi|386002859|ref|YP_005921158.1| - 0.041 14.1 0.4 0.077 13.2 0.4 1.3 1 0 0 1 1 1 0 Type I restriction modification DNA specificity domain AT_hook PF02178.19 gi|386002859|ref|YP_005921158.1| - 0.57 10.2 5.5 1.5 9.0 5.5 1.7 1 0 0 1 1 1 0 AT hook motif Adenylsucc_synt PF00709.21 gi|386002860|ref|YP_005921159.1| - 3.8e-159 530.1 0.0 4.3e-159 529.9 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase RimK PF08443.11 gi|386002861|ref|YP_005921160.1| - 2.1e-26 92.7 0.0 2.7e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|386002861|ref|YP_005921160.1| - 3.9e-13 49.2 0.0 6.5e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|386002861|ref|YP_005921160.1| - 1.2e-06 28.0 0.0 0.0069 15.7 0.0 2.7 1 1 1 2 2 2 2 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|386002861|ref|YP_005921160.1| - 3.7e-06 26.4 0.0 0.0032 16.8 0.0 2.1 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|386002861|ref|YP_005921160.1| - 1.6e-05 25.0 0.0 0.22 11.6 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp domain Rimk_N PF18030.1 gi|386002861|ref|YP_005921160.1| - 0.023 15.1 0.0 0.035 14.5 0.0 1.3 1 0 0 1 1 1 0 RimK PreATP-grasp domain DUF2249 PF10006.9 gi|386002861|ref|YP_005921160.1| - 0.032 14.1 0.1 0.079 12.8 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) R2K_3 PF14243.6 gi|386002861|ref|YP_005921160.1| - 0.069 13.1 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 Rhodanese PF00581.20 gi|386002862|ref|YP_005921161.1| - 1.3e-13 51.4 0.0 1.5e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain AIRS PF00586.24 gi|386002864|ref|YP_005921163.1| - 4.1e-21 75.4 0.2 9.1e-21 74.3 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|386002864|ref|YP_005921163.1| - 1.7e-07 31.5 0.5 3.2e-07 30.6 0.5 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Radical_SAM PF04055.21 gi|386002865|ref|YP_005921164.1| - 8.3e-26 91.4 0.0 1.4e-25 90.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|386002865|ref|YP_005921164.1| - 4.2e-15 55.8 0.0 8.8e-15 54.8 0.0 1.5 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|386002865|ref|YP_005921164.1| - 1.8e-06 28.3 0.0 2.8e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|386002865|ref|YP_005921164.1| - 3.4e-05 23.9 0.0 5.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4192 PF13830.6 gi|386002865|ref|YP_005921164.1| - 0.0013 18.8 1.4 0.0016 18.6 1.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4192) SSF PF00474.17 gi|386002866|ref|YP_005921165.1| - 4.2e-33 114.8 28.4 5.2e-31 107.9 28.4 2.3 1 1 0 1 1 1 1 Sodium:solute symporter family DHNA PF04038.12 gi|386002867|ref|YP_005921166.1| - 7.8e-41 139.0 0.0 8.6e-41 138.8 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase CDP-OH_P_transf PF01066.21 gi|386002868|ref|YP_005921167.1| - 3.5e-08 34.1 1.5 3.5e-08 34.1 1.5 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PS_Dcarbxylase PF02666.15 gi|386002869|ref|YP_005921168.1| - 1.4e-29 103.1 0.4 4.1e-26 91.8 0.1 2.0 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase Peptidase_M23 PF01551.22 gi|386002869|ref|YP_005921168.1| - 0.00028 21.0 0.1 2.5 8.4 0.0 3.2 1 1 2 3 3 3 2 Peptidase family M23 PTS_EIIA_1 PF00358.20 gi|386002869|ref|YP_005921168.1| - 0.013 15.2 0.0 7.1 6.4 0.0 2.5 2 1 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Apocytochr_F_C PF01333.19 gi|386002869|ref|YP_005921168.1| - 0.04 14.0 0.0 0.26 11.3 0.0 2.1 1 1 0 1 1 1 0 Apocytochrome F, C-terminal Biotin_lipoyl PF00364.22 gi|386002869|ref|YP_005921168.1| - 0.047 13.5 0.3 6 6.8 0.0 3.1 3 1 1 4 4 4 0 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|386002869|ref|YP_005921168.1| - 0.094 12.6 0.0 27 4.7 0.0 3.6 5 0 0 5 5 5 0 Biotin-lipoyl like Exosortase_EpsH PF09721.10 gi|386002870|ref|YP_005921169.1| - 1.2e-13 51.2 29.3 1.9e-13 50.6 29.3 1.2 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Peptidase_S8 PF00082.22 gi|386002871|ref|YP_005921170.1| - 2.4e-56 191.2 3.0 6.9e-56 189.7 3.0 1.7 1 1 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.16 gi|386002871|ref|YP_005921170.1| - 0.00047 20.8 0.0 0.00086 19.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase inhibitor I9 Y1_Tnp PF01797.16 gi|386002873|ref|YP_005921172.1| - 3.9e-22 78.6 0.0 4.2e-22 78.5 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 gi|386002874|ref|YP_005921173.1| - 6.7e-24 83.6 0.2 3.1e-23 81.5 0.1 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|386002874|ref|YP_005921173.1| - 7.3e-21 74.6 0.0 1.6e-20 73.5 0.0 1.5 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|386002874|ref|YP_005921173.1| - 4.5e-16 58.1 1.0 9.2e-16 57.1 1.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-NADH-PPase PF09297.11 gi|386002874|ref|YP_005921173.1| - 0.0012 18.4 1.1 0.0023 17.5 1.1 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|386002874|ref|YP_005921173.1| - 0.0082 16.1 0.3 0.014 15.4 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|386002874|ref|YP_005921173.1| - 0.022 14.3 0.2 3.5 7.2 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C2HC5 PF06221.13 gi|386002874|ref|YP_005921173.1| - 0.075 13.0 0.3 0.14 12.1 0.3 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type SDF PF00375.18 gi|386002875|ref|YP_005921174.1| - 2e-116 389.2 39.6 2.3e-116 389.1 39.6 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Phosphorylase PF00343.20 gi|386002876|ref|YP_005921175.1| - 2.9e-27 95.3 0.0 1.2e-15 56.9 0.0 3.9 4 0 0 4 4 4 4 Carbohydrate phosphorylase PfkB PF00294.24 gi|386002877|ref|YP_005921176.1| - 2.3e-44 151.9 0.0 2.8e-44 151.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|386002877|ref|YP_005921176.1| - 7.5e-08 32.0 0.0 1.1e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase OrfB_Zn_ribbon PF07282.11 gi|386002879|ref|YP_005921178.1| - 1.8e-20 72.6 0.2 5.3e-20 71.1 0.2 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|386002879|ref|YP_005921178.1| - 2.2e-08 34.3 0.0 4.1e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|386002879|ref|YP_005921178.1| - 0.035 13.6 0.4 0.085 12.4 0.4 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ParE_toxin PF05016.15 gi|386002880|ref|YP_005921179.1| - 7.6e-07 29.7 0.3 9.2e-07 29.4 0.3 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Gp49 PF05973.14 gi|386002880|ref|YP_005921179.1| - 0.014 15.5 0.0 0.017 15.2 0.0 1.1 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) DUF454 PF04304.13 gi|386002882|ref|YP_005921181.1| - 0.034 14.2 1.4 0.067 13.2 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF454) IMP2_N PF18590.1 gi|386002882|ref|YP_005921181.1| - 0.083 13.4 0.3 0.31 11.6 0.1 2.0 2 0 0 2 2 2 0 Immune Mapped Protein 2 (IMP2) N-terminal domain DUF2207 PF09972.9 gi|386002882|ref|YP_005921181.1| - 0.12 11.1 5.0 0.044 12.5 2.0 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DDE_Tnp_1 PF01609.21 gi|386002883|ref|YP_005921182.1| - 5.5e-12 45.8 0.2 7.7e-12 45.3 0.2 1.2 1 0 0 1 1 1 1 Transposase DDE domain MWFE PF15879.5 gi|386002883|ref|YP_005921182.1| - 0.018 15.2 0.1 0.029 14.5 0.1 1.3 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase MWFE subunit PemK_toxin PF02452.17 gi|386002884|ref|YP_005921183.1| - 8.1e-08 32.7 0.0 9.7e-08 32.4 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system N6_Mtase PF02384.16 gi|386002885|ref|YP_005921184.1| - 2.9e-35 122.0 0.1 1.1e-34 120.1 0.0 1.9 2 0 0 2 2 2 1 N-6 DNA Methylase HSDR_N_2 PF13588.6 gi|386002885|ref|YP_005921184.1| - 1.1e-11 44.7 0.0 2e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.18 gi|386002885|ref|YP_005921184.1| - 1.6e-05 24.6 0.0 6.8e-05 22.6 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|386002885|ref|YP_005921184.1| - 0.00075 19.3 0.0 0.0022 17.7 0.0 1.7 1 1 0 1 1 1 1 DNA methylase HSDR_N PF04313.14 gi|386002885|ref|YP_005921184.1| - 0.0096 15.9 0.2 0.027 14.4 0.0 1.9 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_9 PF08011.11 gi|386002885|ref|YP_005921184.1| - 0.051 13.5 0.0 0.17 11.8 0.0 1.9 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily BCDHK_Adom3 PF10436.9 gi|386002885|ref|YP_005921184.1| - 0.064 13.1 0.0 6.9 6.5 0.0 2.6 2 0 0 2 2 2 0 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase Methylase_S PF01420.19 gi|386002886|ref|YP_005921185.1| - 6.8e-15 55.7 0.0 2.6e-08 34.3 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DndB PF14072.6 gi|386002887|ref|YP_005921186.1| - 5.4e-06 25.8 0.1 2.3e-05 23.8 0.0 2.0 2 1 0 2 2 2 1 DNA-sulfur modification-associated PRD PF00874.20 gi|386002887|ref|YP_005921186.1| - 0.13 12.6 1.5 0.75 10.1 1.3 2.3 2 0 0 2 2 2 0 PRD domain DUF919 PF06034.11 gi|386002887|ref|YP_005921186.1| - 0.29 11.0 4.0 1.1 9.1 3.6 2.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) FTR_C PF02741.15 gi|386002890|ref|YP_005921189.1| - 1.1e-64 216.9 0.9 1.7e-64 216.3 0.3 1.6 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.18 gi|386002890|ref|YP_005921189.1| - 2.3e-61 205.9 0.5 5.7e-61 204.6 0.1 1.8 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase IMP_cyclohyd PF07826.11 gi|386002891|ref|YP_005921190.1| - 1.4e-56 191.1 0.0 1.7e-56 190.8 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein TPP_enzyme_C PF02775.21 gi|386002892|ref|YP_005921191.1| - 3.1e-24 85.5 0.0 4e-24 85.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|386002893|ref|YP_005921192.1| - 7.2e-68 228.8 0.0 9.2e-68 228.4 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|386002893|ref|YP_005921192.1| - 1.4e-31 108.8 0.2 2.4e-31 108.1 0.2 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|386002893|ref|YP_005921192.1| - 7.2e-11 42.0 0.1 1.7e-10 40.9 0.1 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|386002894|ref|YP_005921193.1| - 2.8e-11 42.8 15.0 4.1e-06 26.4 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|386002894|ref|YP_005921193.1| - 1.8e-08 34.4 14.1 3.2e-08 33.6 14.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002894|ref|YP_005921193.1| - 4.3e-07 29.7 17.4 0.00018 21.5 6.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|386002894|ref|YP_005921193.1| - 1.2e-06 28.6 12.3 0.00011 22.3 14.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|386002894|ref|YP_005921193.1| - 2.6e-05 24.0 12.0 0.01 15.9 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386002894|ref|YP_005921193.1| - 3.7e-05 24.2 15.5 0.00018 22.0 15.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386002894|ref|YP_005921193.1| - 6.5e-05 23.8 13.4 0.0049 17.8 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|386002894|ref|YP_005921193.1| - 0.00013 22.4 10.1 0.056 14.0 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386002894|ref|YP_005921193.1| - 0.0006 19.9 15.0 0.012 15.8 15.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|386002894|ref|YP_005921193.1| - 0.043 14.8 15.5 0.27 12.3 1.3 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|386002894|ref|YP_005921193.1| - 0.083 13.5 12.0 1.2 9.8 2.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|386002894|ref|YP_005921193.1| - 0.11 13.0 16.4 1.7 9.1 5.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386002894|ref|YP_005921193.1| - 0.85 10.3 21.0 1.8 9.3 6.7 2.8 3 1 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|386002894|ref|YP_005921193.1| - 0.98 10.2 15.0 1.2 9.9 2.7 2.9 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|386002894|ref|YP_005921193.1| - 8.3 7.3 15.6 5.3 8.0 4.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|386002895|ref|YP_005921194.1| - 2.5e-40 138.4 0.2 3e-40 138.1 0.2 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase T2SSE PF00437.20 gi|386002897|ref|YP_005921196.1| - 8.4e-14 51.3 0.0 1.4e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|386002897|ref|YP_005921196.1| - 9.4e-08 32.6 0.0 2.1e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 PIN domain KH_1 PF00013.29 gi|386002897|ref|YP_005921196.1| - 4.5e-06 26.4 0.1 1.2e-05 25.0 0.1 1.7 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|386002897|ref|YP_005921196.1| - 0.00027 20.7 0.6 0.0013 18.6 0.6 2.2 1 0 0 1 1 1 1 KH domain AAA_33 PF13671.6 gi|386002897|ref|YP_005921196.1| - 0.0011 19.1 0.0 0.0052 17.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|386002897|ref|YP_005921196.1| - 0.0045 17.5 0.0 0.012 16.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain PIN_4 PF13638.6 gi|386002897|ref|YP_005921196.1| - 0.0069 16.7 0.0 0.028 14.7 0.0 1.9 2 0 0 2 2 2 1 PIN domain NTPase_1 PF03266.15 gi|386002897|ref|YP_005921196.1| - 0.013 15.4 0.0 0.057 13.3 0.0 2.1 2 0 0 2 2 2 0 NTPase KH_5 PF13184.6 gi|386002897|ref|YP_005921196.1| - 0.016 15.3 1.0 0.055 13.6 0.3 2.3 2 0 0 2 2 1 0 NusA-like KH domain TIP49 PF06068.13 gi|386002897|ref|YP_005921196.1| - 0.017 14.4 0.0 0.04 13.1 0.0 1.6 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_29 PF13555.6 gi|386002897|ref|YP_005921196.1| - 0.021 14.5 0.0 0.069 12.9 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA PF00004.29 gi|386002897|ref|YP_005921196.1| - 0.022 15.2 0.0 0.06 13.8 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|386002897|ref|YP_005921196.1| - 0.03 14.1 0.0 0.052 13.3 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|386002897|ref|YP_005921196.1| - 0.038 14.4 0.0 0.07 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|386002897|ref|YP_005921196.1| - 0.067 12.5 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.12 gi|386002897|ref|YP_005921196.1| - 0.075 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_11 PF13086.6 gi|386002897|ref|YP_005921196.1| - 0.086 12.6 0.0 0.19 11.5 0.0 1.5 2 0 0 2 2 1 0 AAA domain NUMOD3 PF07460.11 gi|386002897|ref|YP_005921196.1| - 0.094 13.0 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 NUMOD3 motif (2 copies) RNA_helicase PF00910.22 gi|386002897|ref|YP_005921196.1| - 0.1 13.0 0.0 0.28 11.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|386002897|ref|YP_005921196.1| - 0.11 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|386002897|ref|YP_005921196.1| - 0.11 12.0 0.1 0.45 10.1 0.0 2.1 3 0 0 3 3 3 0 AAA domain IstB_IS21 PF01695.17 gi|386002897|ref|YP_005921196.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein KTI12 PF08433.10 gi|386002897|ref|YP_005921196.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_5 PF07728.14 gi|386002897|ref|YP_005921196.1| - 0.13 12.3 0.0 0.56 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|386002897|ref|YP_005921196.1| - 0.14 12.4 0.0 0.71 10.2 0.0 2.1 3 0 0 3 3 2 0 AAA domain NO_synthase PF02898.15 gi|386002897|ref|YP_005921196.1| - 0.23 10.4 0.0 0.36 9.8 0.0 1.2 1 0 0 1 1 1 0 Nitric oxide synthase, oxygenase domain Cupin_2 PF07883.11 gi|386002898|ref|YP_005921197.1| - 8.1e-09 35.1 0.0 1.1e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|386002898|ref|YP_005921197.1| - 7e-06 26.0 0.0 9e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.7 gi|386002898|ref|YP_005921197.1| - 0.00035 20.4 0.0 0.00039 20.2 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|386002898|ref|YP_005921197.1| - 0.00061 19.4 0.0 0.00094 18.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.12 gi|386002898|ref|YP_005921197.1| - 0.0034 17.2 0.0 0.0045 16.8 0.0 1.4 1 1 0 1 1 1 1 Ethanolamine utilisation protein EutQ AraC_binding_2 PF14525.6 gi|386002898|ref|YP_005921197.1| - 0.11 12.2 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Ectoine_synth PF06339.12 gi|386002898|ref|YP_005921197.1| - 0.15 12.2 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase HTH_5 PF01022.20 gi|386002899|ref|YP_005921198.1| - 1.2e-05 25.1 0.2 2.2e-05 24.2 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|386002899|ref|YP_005921198.1| - 0.00018 21.5 0.2 0.0004 20.4 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|386002899|ref|YP_005921198.1| - 0.0058 16.8 0.3 0.026 14.7 0.2 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain BLACT_WH PF17778.1 gi|386002899|ref|YP_005921198.1| - 0.092 12.7 0.2 8.3 6.5 0.0 2.5 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain MTH865 PF07747.11 gi|386002900|ref|YP_005921199.1| - 5.7e-30 102.9 0.3 6.4e-30 102.8 0.3 1.0 1 0 0 1 1 1 1 MTH865-like family OrfB_Zn_ribbon PF07282.11 gi|386002901|ref|YP_005921200.1| - 8.2e-23 80.1 0.1 2.1e-22 78.8 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|386002901|ref|YP_005921200.1| - 1.8e-22 79.8 0.0 4.2e-22 78.6 0.0 1.6 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|386002901|ref|YP_005921200.1| - 2.3e-16 59.0 3.5 5.1e-16 57.9 3.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zf-NADH-PPase PF09297.11 gi|386002901|ref|YP_005921200.1| - 0.00081 19.0 0.3 0.0013 18.3 0.3 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|386002901|ref|YP_005921200.1| - 0.0011 18.5 0.3 0.28 10.7 0.0 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|386002901|ref|YP_005921200.1| - 0.0019 18.2 0.4 0.0033 17.4 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.15 gi|386002901|ref|YP_005921200.1| - 0.027 14.0 0.8 1 9.0 0.1 2.9 3 0 0 3 3 3 0 RecR protein FeoB_Cyto PF17910.1 gi|386002901|ref|YP_005921200.1| - 0.028 15.0 0.7 3.7 8.1 0.2 2.7 2 1 1 3 3 3 0 FeoB cytosolic helical domain zinc_ribbon_2 PF13240.6 gi|386002901|ref|YP_005921200.1| - 0.05 13.3 0.5 4.3 7.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.27 gi|386002901|ref|YP_005921200.1| - 0.099 12.3 0.3 1.1 9.0 0.1 2.5 2 0 0 2 2 2 0 GATA zinc finger HTH_24 PF13412.6 gi|386002902|ref|YP_005921201.1| - 0.0002 20.8 0.1 0.00051 19.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|386002902|ref|YP_005921201.1| - 0.00021 21.0 0.1 0.00054 19.7 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_3 PF01381.22 gi|386002902|ref|YP_005921201.1| - 0.00025 21.1 0.0 0.00045 20.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.7 gi|386002902|ref|YP_005921201.1| - 0.0057 16.5 0.0 0.02 14.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_1 PF00126.27 gi|386002902|ref|YP_005921201.1| - 0.0098 15.8 0.2 4 7.5 0.0 2.6 2 1 1 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_37 PF13744.6 gi|386002902|ref|YP_005921201.1| - 0.012 15.5 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|386002902|ref|YP_005921201.1| - 0.013 15.9 0.1 0.02 15.2 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|386002902|ref|YP_005921201.1| - 0.02 14.6 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 RepB PF07506.11 gi|386002902|ref|YP_005921201.1| - 0.025 14.7 0.0 0.042 13.9 0.0 1.3 1 1 0 1 1 1 0 RepB plasmid partitioning protein HTH_5 PF01022.20 gi|386002902|ref|YP_005921201.1| - 0.046 13.6 0.1 0.41 10.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family YdaS_antitoxin PF15943.5 gi|386002902|ref|YP_005921201.1| - 0.046 13.6 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_28 PF13518.6 gi|386002902|ref|YP_005921201.1| - 0.071 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|386002902|ref|YP_005921201.1| - 0.076 13.2 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_19 PF12844.7 gi|386002902|ref|YP_005921201.1| - 0.14 12.2 0.0 0.19 11.8 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain TnsD PF15978.5 gi|386002902|ref|YP_005921201.1| - 0.14 11.1 0.0 0.17 10.9 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D P22_Cro PF14549.6 gi|386002902|ref|YP_005921201.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_Tnp_ISL3 PF13542.6 gi|386002902|ref|YP_005921201.1| - 0.16 11.4 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Asn_synthase PF00733.21 gi|386002903|ref|YP_005921202.1| - 5.9e-07 29.5 0.0 8.2e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|386002903|ref|YP_005921202.1| - 0.00021 20.9 0.0 0.0031 17.0 0.0 2.5 3 0 0 3 3 3 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|386002903|ref|YP_005921202.1| - 0.0004 19.6 0.0 0.0022 17.2 0.0 1.9 2 0 0 2 2 2 1 NAD synthase tRNA_Me_trans PF03054.16 gi|386002903|ref|YP_005921202.1| - 0.015 14.1 0.0 0.75 8.5 0.0 2.1 2 0 0 2 2 2 0 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|386002903|ref|YP_005921202.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 PP-loop family ThiI PF02568.14 gi|386002903|ref|YP_005921202.1| - 0.12 11.9 0.0 0.55 9.8 0.0 2.0 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) DUF63 PF01889.17 gi|386002904|ref|YP_005921203.1| - 3.1e-93 312.9 5.0 3.4e-93 312.8 5.0 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Proteasome PF00227.26 gi|386002905|ref|YP_005921204.1| - 4.5e-42 143.7 0.0 6.2e-42 143.2 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit KH_7 PF17214.3 gi|386002906|ref|YP_005921205.1| - 4e-29 100.4 2.2 1.1e-26 92.5 0.4 2.8 2 0 0 2 2 2 2 KH domain Beta-Casp PF10996.8 gi|386002906|ref|YP_005921205.1| - 1.8e-25 89.4 0.0 3.6e-25 88.4 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|386002906|ref|YP_005921205.1| - 2e-15 57.3 0.7 1.1e-14 54.9 0.7 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|386002906|ref|YP_005921205.1| - 4.3e-15 55.4 0.0 1.3e-14 53.8 0.0 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|386002906|ref|YP_005921205.1| - 4.2e-12 45.9 0.0 7.6e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|386002906|ref|YP_005921205.1| - 3e-09 36.7 0.1 6.4e-09 35.6 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|386002906|ref|YP_005921205.1| - 6.8e-05 22.6 0.1 0.001 18.8 0.0 3.0 3 0 0 3 3 3 1 KH domain Lactamase_B_3 PF13483.6 gi|386002906|ref|YP_005921205.1| - 0.00025 21.0 0.0 0.00067 19.6 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|386002906|ref|YP_005921205.1| - 0.015 15.2 0.1 0.042 13.7 0.1 1.7 1 0 0 1 1 1 0 KH domain KH_1 PF00013.29 gi|386002906|ref|YP_005921205.1| - 0.095 12.5 0.0 0.27 11.1 0.0 1.8 1 0 0 1 1 1 0 KH domain ArsR PF09824.9 gi|386002907|ref|YP_005921206.1| - 8.6e-65 217.2 0.0 9.7e-65 217.0 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_20 PF12840.7 gi|386002907|ref|YP_005921206.1| - 0.0051 16.8 0.1 0.018 15.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|386002907|ref|YP_005921206.1| - 0.026 14.4 0.2 4.6 7.2 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|386002907|ref|YP_005921206.1| - 0.041 13.8 0.1 11 6.0 0.0 2.5 2 0 0 2 2 2 0 MarR family HTH_AsnC-type PF13404.6 gi|386002907|ref|YP_005921206.1| - 0.092 12.6 0.2 0.28 11.0 0.2 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|386002908|ref|YP_005921207.1| - 6.2e-10 38.8 0.0 1.6e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|386002908|ref|YP_005921207.1| - 1.2e-09 37.6 0.0 2.2e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|386002908|ref|YP_005921207.1| - 6.7e-07 29.7 0.0 1.5e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|386002908|ref|YP_005921207.1| - 7e-06 25.9 0.0 1.7e-05 24.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|386002908|ref|YP_005921207.1| - 1.5e-05 24.9 0.2 6.2e-05 22.9 0.1 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|386002908|ref|YP_005921207.1| - 5.1e-05 23.1 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.22 gi|386002908|ref|YP_005921207.1| - 5.9e-05 23.0 0.0 0.00034 20.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_45 PF14947.6 gi|386002908|ref|YP_005921207.1| - 0.0007 19.5 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_23 PF13384.6 gi|386002908|ref|YP_005921207.1| - 0.001 18.8 0.0 0.0029 17.3 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|386002908|ref|YP_005921207.1| - 0.0012 19.0 0.0 0.0027 17.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|386002908|ref|YP_005921207.1| - 0.0023 18.3 0.0 0.0055 17.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 gi|386002908|ref|YP_005921207.1| - 0.0047 16.6 0.2 0.045 13.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|386002908|ref|YP_005921207.1| - 0.0067 16.5 0.5 0.03 14.4 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|386002908|ref|YP_005921207.1| - 0.0092 15.8 0.0 0.024 14.5 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_17 PF12728.7 gi|386002908|ref|YP_005921207.1| - 0.014 15.6 0.1 0.042 14.1 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|386002908|ref|YP_005921207.1| - 0.015 15.2 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|386002908|ref|YP_005921207.1| - 0.017 14.9 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF1495 PF07381.11 gi|386002908|ref|YP_005921207.1| - 0.017 14.9 0.0 4.4 7.2 0.0 2.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) HTH_31 PF13560.6 gi|386002908|ref|YP_005921207.1| - 0.019 15.3 0.0 0.19 12.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Mnd1 PF03962.15 gi|386002908|ref|YP_005921207.1| - 0.02 15.2 0.1 0.07 13.4 0.0 2.0 2 0 0 2 2 1 0 Mnd1 HTH domain HTH_1 PF00126.27 gi|386002908|ref|YP_005921207.1| - 0.027 14.4 0.0 0.12 12.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 gi|386002908|ref|YP_005921207.1| - 0.028 14.2 0.0 0.066 13.0 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_13 PF11972.8 gi|386002908|ref|YP_005921207.1| - 0.032 14.3 0.0 0.076 13.1 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain YdaS_antitoxin PF15943.5 gi|386002908|ref|YP_005921207.1| - 0.033 14.0 0.0 0.087 12.7 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Mrr_N PF14338.6 gi|386002908|ref|YP_005921207.1| - 0.045 13.9 0.0 0.18 12.0 0.0 1.9 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_Tnp_1 PF01527.20 gi|386002908|ref|YP_005921207.1| - 0.048 14.0 0.0 0.11 12.8 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_29 PF13551.6 gi|386002908|ref|YP_005921207.1| - 0.05 13.6 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix AbiEi_4 PF13338.6 gi|386002908|ref|YP_005921207.1| - 0.052 13.7 0.0 0.19 11.9 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin HTH_10 PF04967.12 gi|386002908|ref|YP_005921207.1| - 0.061 13.1 0.0 0.17 11.7 0.0 1.7 2 0 0 2 2 1 0 HTH DNA binding domain KORA PF16509.5 gi|386002908|ref|YP_005921207.1| - 0.071 13.4 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor DEAD PF00270.29 gi|386002909|ref|YP_005921208.1| - 2.1e-20 73.2 0.0 3.9e-20 72.4 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|386002909|ref|YP_005921208.1| - 1.3e-13 51.3 0.0 2.7e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|386002909|ref|YP_005921208.1| - 1.1e-08 35.3 0.0 1.7e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HTH_38 PF13936.6 gi|386002909|ref|YP_005921208.1| - 0.00059 19.5 0.1 0.13 12.1 0.0 3.8 4 0 0 4 4 4 1 Helix-turn-helix domain SOCS_box PF07525.16 gi|386002909|ref|YP_005921208.1| - 0.056 13.8 0.1 0.23 11.8 0.1 2.1 1 1 0 1 1 1 0 SOCS box Peptidase_C1 PF00112.23 gi|386002910|ref|YP_005921209.1| - 2e-43 149.0 5.1 3.1e-43 148.4 5.1 1.2 1 0 0 1 1 1 1 Papain family cysteine protease DUF4114 PF13448.6 gi|386002910|ref|YP_005921209.1| - 2.4e-07 31.4 0.1 5.9e-07 30.2 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4114) Inhibitor_I42 PF09394.10 gi|386002911|ref|YP_005921210.1| - 1.9e-19 69.9 0.0 2.2e-19 69.7 0.0 1.0 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 MarR_2 PF12802.7 gi|386002913|ref|YP_005921212.1| - 4.4e-06 26.5 0.0 1e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|386002913|ref|YP_005921212.1| - 9.3e-06 25.4 0.0 2.2e-05 24.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|386002913|ref|YP_005921212.1| - 2.7e-05 24.0 0.1 5.3e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|386002913|ref|YP_005921212.1| - 0.005 16.4 0.3 0.067 12.8 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|386002913|ref|YP_005921212.1| - 0.03 13.8 0.0 0.054 13.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 MarR PF01047.22 gi|386002913|ref|YP_005921212.1| - 0.064 13.2 0.1 0.16 11.9 0.1 1.7 1 1 1 2 2 2 0 MarR family HTH_27 PF13463.6 gi|386002913|ref|YP_005921212.1| - 0.078 13.5 0.2 0.14 12.6 0.2 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|386002913|ref|YP_005921212.1| - 0.18 12.2 0.2 0.28 11.5 0.2 1.3 1 0 0 1 1 1 0 Penicillinase repressor DUF11 PF01345.18 gi|386002915|ref|YP_005921214.1| - 3.6e-16 59.3 0.8 1.4e-06 28.5 0.2 3.6 3 0 0 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.11 gi|386002915|ref|YP_005921214.1| - 1.6e-08 34.8 0.0 0.0023 18.1 0.0 3.4 3 0 0 3 3 3 2 CARDB BatD PF13584.6 gi|386002915|ref|YP_005921214.1| - 0.00013 21.0 0.0 0.0012 17.8 0.0 2.1 1 1 1 2 2 2 1 Oxygen tolerance NPCBM_assoc PF10633.9 gi|386002915|ref|YP_005921214.1| - 0.00076 19.7 2.2 6.2 7.2 0.0 4.4 4 1 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|386002915|ref|YP_005921214.1| - 0.0024 17.3 0.0 0.037 13.4 0.0 2.6 2 1 1 3 3 3 1 Translocon-associated protein beta (TRAPB) ASH PF15780.5 gi|386002915|ref|YP_005921214.1| - 0.0081 16.4 0.0 0.54 10.5 0.0 2.9 3 0 0 3 3 3 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Top6b_C PF18000.1 gi|386002915|ref|YP_005921214.1| - 0.033 14.4 0.1 15 5.8 0.0 3.5 3 1 0 3 3 3 0 Type 2 DNA topoisomerase 6 subunit B C-terminal domain DUF824 PF05688.11 gi|386002915|ref|YP_005921214.1| - 0.14 12.0 0.3 0.33 10.8 0.3 1.6 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) DUF5122 PF17164.4 gi|386002916|ref|YP_005921215.1| - 0.0016 18.7 3.2 0.013 15.7 0.2 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF5122) beta-propeller BNR_2 PF13088.6 gi|386002916|ref|YP_005921215.1| - 0.11 11.8 0.0 2 7.6 0.0 2.0 1 1 1 2 2 2 0 BNR repeat-like domain SPDY PF03771.16 gi|386002917|ref|YP_005921216.1| - 0.012 15.5 2.2 0.31 11.0 0.0 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF317) Pyrid_ox_like PF16242.5 gi|386002917|ref|YP_005921216.1| - 0.076 12.6 0.1 5.8 6.5 0.0 2.8 3 0 0 3 3 3 0 Pyridoxamine 5'-phosphate oxidase like MTS PF05175.14 gi|386002918|ref|YP_005921217.1| - 1.8e-09 37.4 0.0 4e-09 36.2 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|386002918|ref|YP_005921217.1| - 5e-06 27.1 0.0 1.5e-05 25.6 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386002918|ref|YP_005921217.1| - 0.00012 22.0 0.0 0.0003 20.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|386002918|ref|YP_005921217.1| - 0.00019 20.9 0.0 0.00028 20.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|386002918|ref|YP_005921217.1| - 0.00045 20.8 0.0 0.00078 20.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386002918|ref|YP_005921217.1| - 0.00058 20.5 0.0 0.0013 19.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|386002918|ref|YP_005921217.1| - 0.0012 17.9 0.0 0.0016 17.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 gi|386002918|ref|YP_005921217.1| - 0.0087 15.9 0.0 0.016 15.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain UPF0146 PF03686.13 gi|386002918|ref|YP_005921217.1| - 0.02 14.8 0.0 0.03 14.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Methyltransf_18 PF12847.7 gi|386002918|ref|YP_005921217.1| - 0.022 14.7 0.0 0.033 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|386002918|ref|YP_005921217.1| - 0.062 13.0 0.0 0.088 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|386002918|ref|YP_005921217.1| - 0.15 11.6 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) DREV PF05219.12 gi|386002918|ref|YP_005921217.1| - 0.23 10.5 0.0 0.28 10.2 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase DUF1699 PF08004.11 gi|386002920|ref|YP_005921219.1| - 9.3e-28 96.5 0.1 1e-27 96.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF4777 PF16007.5 gi|386002920|ref|YP_005921219.1| - 0.0045 17.2 0.0 0.0062 16.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4777) DUF1699 PF08004.11 gi|386002921|ref|YP_005921220.1| - 1.8e-53 179.7 0.1 2e-53 179.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) NOG1_N PF17835.1 gi|386002922|ref|YP_005921221.1| - 3.4e-48 163.6 0.0 4.9e-48 163.1 0.0 1.2 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|386002922|ref|YP_005921221.1| - 9.1e-23 79.8 0.0 1.7e-22 78.9 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|386002922|ref|YP_005921221.1| - 2.1e-18 66.5 0.0 3.9e-18 65.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|386002922|ref|YP_005921221.1| - 1.3e-12 47.6 0.0 1.9e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|386002922|ref|YP_005921221.1| - 0.067 13.2 0.1 3 7.9 0.1 2.2 1 1 1 2 2 2 0 Dynamin family DnaB_C PF03796.15 gi|386002922|ref|YP_005921221.1| - 0.074 12.4 0.0 11 5.3 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AIG1 PF04548.16 gi|386002922|ref|YP_005921221.1| - 0.17 11.2 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 AIG1 family Gar1 PF04410.14 gi|386002923|ref|YP_005921222.1| - 7.7e-15 55.0 0.2 9e-15 54.8 0.2 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|386002924|ref|YP_005921223.1| - 1.2e-43 147.0 3.3 4.6e-22 77.9 1.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|386002924|ref|YP_005921223.1| - 3e-18 65.0 0.8 3e-18 65.0 0.8 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|386002924|ref|YP_005921223.1| - 7.5e-05 22.2 0.5 0.053 13.0 0.2 3.4 2 1 0 2 2 2 1 Sigma-70, region 4 Lar_restr_allev PF14354.6 gi|386002924|ref|YP_005921223.1| - 0.0035 17.7 0.4 0.092 13.1 0.2 2.5 2 0 0 2 2 2 1 Restriction alleviation protein Lar HTH_AsnC-type PF13404.6 gi|386002924|ref|YP_005921223.1| - 0.0059 16.4 1.9 0.06 13.2 0.1 3.2 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Cyclin_C PF02984.19 gi|386002924|ref|YP_005921223.1| - 0.017 15.2 0.0 9.4 6.3 0.0 2.5 2 0 0 2 2 2 0 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|386002924|ref|YP_005921223.1| - 0.017 15.0 0.3 0.055 13.4 0.3 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain eIF-5_eIF-2B PF01873.17 gi|386002924|ref|YP_005921223.1| - 0.02 14.8 1.0 0.38 10.6 1.2 2.4 2 0 0 2 2 2 0 Domain found in IF2B/IF5 HTH_3 PF01381.22 gi|386002924|ref|YP_005921223.1| - 0.028 14.5 0.3 3.9 7.6 0.0 3.9 3 1 1 4 4 4 0 Helix-turn-helix HTH_Crp_2 PF13545.6 gi|386002924|ref|YP_005921223.1| - 0.037 14.0 2.4 10 6.1 0.0 3.6 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain Cyclin_N PF00134.23 gi|386002924|ref|YP_005921223.1| - 0.037 13.8 0.0 0.95 9.2 0.0 2.3 1 1 1 2 2 2 0 Cyclin, N-terminal domain HTH_31 PF13560.6 gi|386002924|ref|YP_005921223.1| - 0.039 14.3 4.5 5.6 7.4 0.1 3.9 3 1 0 3 3 3 0 Helix-turn-helix domain Terminase_GpA PF05876.12 gi|386002924|ref|YP_005921223.1| - 0.041 12.4 0.2 0.061 11.9 0.2 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) RB_B PF01857.20 gi|386002924|ref|YP_005921223.1| - 0.047 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain RPA_interact_C PF14768.6 gi|386002924|ref|YP_005921223.1| - 0.049 14.2 0.2 4.1 8.0 0.1 2.5 2 1 0 2 2 2 0 Replication protein A interacting C-terminal Ribosomal_S27e PF01667.17 gi|386002924|ref|YP_005921223.1| - 0.054 13.2 0.2 0.054 13.2 0.2 1.9 2 0 0 2 2 1 0 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|386002924|ref|YP_005921223.1| - 0.057 12.9 0.5 3 7.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|386002924|ref|YP_005921223.1| - 0.11 12.3 1.1 0.68 9.7 1.1 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain SR1P PF13790.6 gi|386002924|ref|YP_005921223.1| - 0.13 12.4 0.5 26 5.0 0.1 2.7 2 0 0 2 2 2 0 SR1 protein IBR PF01485.21 gi|386002924|ref|YP_005921223.1| - 0.18 12.1 0.5 0.49 10.7 0.2 1.8 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain zinc_ribbon_2 PF13240.6 gi|386002924|ref|YP_005921223.1| - 0.18 11.6 0.9 5.3 6.9 0.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|386002924|ref|YP_005921223.1| - 0.36 10.7 2.4 3.5 7.6 0.2 2.6 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DNA_ligase_ZBD PF03119.16 gi|386002924|ref|YP_005921223.1| - 0.38 10.8 3.4 1.6 8.8 3.4 2.1 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|386002924|ref|YP_005921223.1| - 1 9.5 5.5 7.7 6.7 2.7 3.1 2 1 1 3 3 3 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|386002924|ref|YP_005921223.1| - 2.6 7.7 4.9 16 5.2 0.1 2.7 3 0 0 3 3 2 0 Ubiquitin-Binding Zinc Finger HTH_23 PF13384.6 gi|386002924|ref|YP_005921223.1| - 3.6 7.5 7.5 0.91 9.4 0.1 3.5 3 1 0 3 3 3 0 Homeodomain-like domain PseudoU_synth_1 PF01416.20 gi|386002925|ref|YP_005921224.1| - 1.9e-25 89.4 0.0 2.1e-20 73.2 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase Aconitase PF00330.20 gi|386002926|ref|YP_005921225.1| - 2.7e-90 303.6 1.4 5.8e-88 295.9 1.4 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|386002926|ref|YP_005921225.1| - 0.12 11.1 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) PALP PF00291.25 gi|386002927|ref|YP_005921226.1| - 4.7e-41 141.1 0.0 5.8e-41 140.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NAD_kinase PF01513.21 gi|386002928|ref|YP_005921227.1| - 1.7e-50 171.9 0.1 2e-50 171.6 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DeoRC PF00455.22 gi|386002928|ref|YP_005921227.1| - 1.5e-05 25.0 0.1 3e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 DeoR C terminal sensor domain DAGK_cat PF00781.24 gi|386002928|ref|YP_005921227.1| - 2.2e-05 24.0 1.2 6.8e-05 22.5 0.1 2.3 3 0 0 3 3 3 1 Diacylglycerol kinase catalytic domain TetR_C_16 PF17920.1 gi|386002928|ref|YP_005921227.1| - 0.1 12.8 2.7 0.11 12.7 0.0 2.5 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain ATP-synt_D PF01813.17 gi|386002929|ref|YP_005921228.1| - 4.5e-53 180.0 7.0 5.7e-53 179.7 7.0 1.1 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.25 gi|386002930|ref|YP_005921229.1| - 3e-60 203.5 0.0 4.2e-60 203.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|386002930|ref|YP_005921229.1| - 4.7e-10 39.8 2.1 4.7e-10 39.8 2.1 2.0 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|386002930|ref|YP_005921229.1| - 0.0094 16.1 1.4 0.015 15.5 0.6 1.8 2 0 0 2 2 2 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|386002931|ref|YP_005921230.1| - 2.6e-94 314.8 0.0 3.4e-94 314.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|386002931|ref|YP_005921230.1| - 5.5e-42 142.5 0.1 9.6e-42 141.7 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|386002931|ref|YP_005921230.1| - 3.5e-06 27.4 0.2 9.6e-06 26.0 0.2 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|386002931|ref|YP_005921230.1| - 0.0012 18.8 0.1 0.0025 17.7 0.1 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain AAA_22 PF13401.6 gi|386002931|ref|YP_005921230.1| - 0.024 14.9 0.0 0.052 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Biotin_lipoyl PF00364.22 gi|386002931|ref|YP_005921230.1| - 0.029 14.2 2.1 0.029 14.2 0.4 1.9 2 0 0 2 2 2 0 Biotin-requiring enzyme Peptidase_M23 PF01551.22 gi|386002931|ref|YP_005921230.1| - 0.063 13.5 0.1 0.33 11.2 0.0 2.2 2 0 0 2 2 2 0 Peptidase family M23 ATP-synt_F PF01990.17 gi|386002932|ref|YP_005921231.1| - 7.1e-16 58.3 0.5 8.1e-16 58.1 0.5 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.16 gi|386002933|ref|YP_005921232.1| - 1.1e-70 238.8 0.2 1.3e-70 238.6 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.18 gi|386002934|ref|YP_005921233.1| - 2.6e-16 59.7 14.3 5e-14 52.2 14.3 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF4897 PF16238.5 gi|386002934|ref|YP_005921233.1| - 0.02 14.8 0.3 0.055 13.3 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4897) DUF885 PF05960.11 gi|386002934|ref|YP_005921233.1| - 0.036 13.7 2.1 0.045 13.4 2.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) MMR_HSR1_Xtn PF16897.5 gi|386002934|ref|YP_005921233.1| - 0.043 13.8 1.3 0.76 9.8 0.1 2.4 1 1 0 2 2 2 0 C-terminal region of MMR_HSR1 domain PSK PF06404.12 gi|386002934|ref|YP_005921233.1| - 0.25 12.4 2.6 0.23 12.5 0.6 1.8 2 0 0 2 2 2 0 Phytosulfokine precursor protein (PSK) ATP-synt_C PF00137.21 gi|386002935|ref|YP_005921234.1| - 0.00011 22.5 1.7 0.00012 22.4 1.7 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.19 gi|386002936|ref|YP_005921235.1| - 1.1e-27 96.4 0.6 1.3e-14 53.2 0.0 2.9 2 1 0 2 2 2 2 V-type ATPase 116kDa subunit family UPF0242 PF06785.11 gi|386002936|ref|YP_005921235.1| - 0.062 13.4 0.0 0.19 11.8 0.0 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Phasin PF05597.11 gi|386002937|ref|YP_005921236.1| - 0.016 15.2 0.6 0.016 15.2 0.6 1.0 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) V-ATPase_G_2 PF16999.5 gi|386002937|ref|YP_005921236.1| - 0.022 15.2 0.8 0.026 14.9 0.8 1.1 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit RuBisCO_large PF00016.20 gi|386002938|ref|YP_005921237.1| - 4.3e-89 298.6 0.4 6e-89 298.2 0.4 1.2 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|386002938|ref|YP_005921237.1| - 1.2e-23 83.6 0.1 3.8e-23 81.9 0.0 1.9 2 1 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain FBPase_3 PF01950.16 gi|386002939|ref|YP_005921238.1| - 1.1e-182 607.1 0.0 1.2e-182 607.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Fer4_7 PF12838.7 gi|386002940|ref|YP_005921239.1| - 5.5e-10 39.7 21.0 0.0003 21.3 3.6 3.2 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386002940|ref|YP_005921239.1| - 1.2e-09 37.6 29.4 3e-05 23.6 1.5 4.0 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386002940|ref|YP_005921239.1| - 1.3e-09 38.9 19.7 0.0012 19.7 2.8 3.3 3 0 0 3 3 3 3 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|386002940|ref|YP_005921239.1| - 3.9e-08 33.3 35.0 3e-05 24.1 9.8 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|386002940|ref|YP_005921239.1| - 5.8e-08 32.8 12.5 1.6e-07 31.4 12.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002940|ref|YP_005921239.1| - 1.5e-07 31.2 30.0 0.0022 18.0 2.1 3.6 3 1 0 3 3 3 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386002940|ref|YP_005921239.1| - 1.4e-05 24.9 29.2 0.0081 16.2 2.1 3.5 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|386002940|ref|YP_005921239.1| - 0.0001 22.6 25.9 0.0043 17.4 4.0 4.1 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|386002940|ref|YP_005921239.1| - 0.00012 22.7 33.6 0.054 14.5 7.2 3.9 3 1 0 3 3 3 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|386002940|ref|YP_005921239.1| - 0.00023 21.2 28.2 0.0022 18.1 17.0 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386002940|ref|YP_005921239.1| - 0.014 16.1 2.7 0.014 16.1 2.7 3.4 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|386002940|ref|YP_005921239.1| - 0.056 14.0 22.7 0.58 10.7 3.0 3.3 1 1 4 5 5 5 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386002940|ref|YP_005921239.1| - 0.061 13.8 23.5 1.2 9.6 4.3 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386002940|ref|YP_005921239.1| - 1.8 8.8 23.7 0.55 10.4 14.4 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|386002940|ref|YP_005921239.1| - 5.6 7.2 18.2 5.2 7.3 3.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain AFOR_C PF01314.18 gi|386002941|ref|YP_005921240.1| - 1.1e-66 225.5 0.0 1.3e-66 225.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|386002941|ref|YP_005921240.1| - 4.3e-64 216.0 0.1 6.7e-64 215.4 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PfkB PF00294.24 gi|386002942|ref|YP_005921241.1| - 1.1e-49 169.4 0.0 1.3e-49 169.1 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|386002942|ref|YP_005921241.1| - 3.2e-07 30.0 0.0 4.4e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|386002942|ref|YP_005921241.1| - 0.008 15.7 0.0 0.01 15.3 0.0 1.1 1 0 0 1 1 1 1 Carbohydrate kinase DeoC PF01791.9 gi|386002943|ref|YP_005921242.1| - 4.4e-49 167.2 0.0 5.2e-49 167.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase NTP_transferase PF00483.23 gi|386002944|ref|YP_005921243.1| - 3.5e-21 75.9 0.0 5.1e-21 75.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|386002944|ref|YP_005921243.1| - 3.1e-17 63.4 1.4 5e-17 62.7 1.4 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|386002944|ref|YP_005921243.1| - 1e-14 53.6 21.7 2e-08 33.6 4.7 4.8 5 0 0 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|386002944|ref|YP_005921243.1| - 1.9e-06 27.5 6.1 1.9e-06 27.5 6.1 4.5 5 0 0 5 5 5 1 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|386002944|ref|YP_005921243.1| - 0.00034 20.4 0.0 0.00052 19.8 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|386002944|ref|YP_005921243.1| - 0.2 11.6 0.0 0.3 11.0 0.0 1.1 1 0 0 1 1 1 0 Cytidylyltransferase Thioredox_DsbH PF03190.15 gi|386002945|ref|YP_005921244.1| - 1.1e-75 253.1 0.0 1.7e-75 252.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|386002945|ref|YP_005921244.1| - 1.2e-09 38.2 0.0 2.7e-09 37.1 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|386002945|ref|YP_005921244.1| - 0.0024 17.2 0.5 0.46 9.7 0.0 3.0 3 0 0 3 3 3 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Thioredoxin_2 PF13098.6 gi|386002945|ref|YP_005921244.1| - 0.024 15.1 0.0 0.054 14.0 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain RPA_interact_N PF14766.6 gi|386002945|ref|YP_005921244.1| - 0.098 12.3 0.4 0.24 11.0 0.4 1.7 1 0 0 1 1 1 0 Replication protein A interacting N-terminal IF-2B PF01008.17 gi|386002948|ref|YP_005921247.1| - 1.4e-82 277.1 0.6 1.6e-82 276.9 0.6 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family FMN_red PF03358.15 gi|386002949|ref|YP_005921248.1| - 1.7e-14 53.9 0.3 4.4e-11 42.8 0.0 2.2 1 1 1 2 2 2 2 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.7 gi|386002949|ref|YP_005921248.1| - 4.3e-12 46.5 0.0 5.9e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|386002949|ref|YP_005921248.1| - 2.3e-07 31.1 0.0 3.2e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.17 gi|386002949|ref|YP_005921248.1| - 6.1e-07 29.3 0.0 9.3e-06 25.5 0.0 2.1 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_3 PF12641.7 gi|386002949|ref|YP_005921248.1| - 4e-06 26.6 0.0 5.7e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Cyclophil_like PF04126.13 gi|386002950|ref|YP_005921249.1| - 2.5e-32 111.2 0.0 2.7e-32 111.1 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like Cyclophil_like2 PF18050.1 gi|386002950|ref|YP_005921249.1| - 1.4e-08 34.7 0.0 1.6e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin-like family DUF4231 PF14015.6 gi|386002951|ref|YP_005921250.1| - 1.2e-27 96.4 0.0 2.3e-27 95.5 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF4231) SLATT_3 PF18184.1 gi|386002951|ref|YP_005921250.1| - 6.9e-07 29.5 0.0 8.4e-07 29.2 0.0 1.2 1 1 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain 3 SLATT_1 PF18181.1 gi|386002951|ref|YP_005921250.1| - 9.7e-07 28.7 0.0 1.3e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain 1 ESAG1 PF03238.13 gi|386002951|ref|YP_005921250.1| - 0.052 13.0 0.0 0.064 12.7 0.0 1.1 1 0 0 1 1 1 0 ESAG protein FlaF PF07309.11 gi|386002951|ref|YP_005921250.1| - 0.099 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Flagellar protein FlaF DUF433 PF04255.14 gi|386002952|ref|YP_005921251.1| - 9.7e-23 79.8 0.0 1.1e-22 79.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF433) SHNi-TPR PF10516.9 gi|386002952|ref|YP_005921251.1| - 0.0088 15.5 0.4 0.015 14.7 0.4 1.3 1 0 0 1 1 1 1 SHNi-TPR AA_kinase PF00696.28 gi|386002953|ref|YP_005921252.1| - 2e-44 152.0 3.2 2.3e-44 151.8 3.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family PYC_OADA PF02436.18 gi|386002954|ref|YP_005921253.1| - 2.5e-59 200.4 0.2 4e-59 199.7 0.2 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|386002954|ref|YP_005921253.1| - 3.5e-39 135.0 0.0 4.6e-39 134.6 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|386002954|ref|YP_005921253.1| - 7.9e-20 70.5 4.3 2e-19 69.2 4.3 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|386002954|ref|YP_005921253.1| - 1.3e-08 34.5 0.9 0.0019 18.0 0.1 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|386002954|ref|YP_005921253.1| - 0.0036 18.0 0.5 0.65 10.7 0.1 2.6 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_D23 PF16576.5 gi|386002954|ref|YP_005921253.1| - 0.0043 16.3 0.5 0.22 10.7 0.1 2.2 1 1 1 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion RnfC_N PF13375.6 gi|386002954|ref|YP_005921253.1| - 0.0046 16.9 0.7 0.026 14.5 0.5 2.1 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 gi|386002954|ref|YP_005921253.1| - 0.0061 16.4 0.8 0.023 14.6 0.8 2.0 1 0 0 1 1 1 1 Glycine cleavage H-protein DUF2118 PF09891.9 gi|386002954|ref|YP_005921253.1| - 0.016 15.2 0.5 0.038 14.0 0.5 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) HlyD_2 PF12700.7 gi|386002954|ref|YP_005921253.1| - 0.16 10.7 0.6 0.29 9.8 0.2 1.6 2 0 0 2 2 2 0 HlyD family secretion protein MarR_2 PF12802.7 gi|386002955|ref|YP_005921254.1| - 0.00027 20.8 0.1 0.00064 19.6 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|386002955|ref|YP_005921254.1| - 0.0039 17.6 0.2 0.008 16.7 0.1 1.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|386002955|ref|YP_005921254.1| - 0.004 17.1 0.0 0.004 17.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix Rio2_N PF09202.11 gi|386002955|ref|YP_005921254.1| - 0.0058 16.8 0.0 0.009 16.2 0.0 1.3 1 1 0 1 1 1 1 Rio2, N-terminal HTH_24 PF13412.6 gi|386002955|ref|YP_005921254.1| - 0.0058 16.2 0.5 0.014 15.0 0.3 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Replic_Relax PF13814.6 gi|386002955|ref|YP_005921254.1| - 0.012 15.7 0.0 0.013 15.5 0.0 1.0 1 0 0 1 1 1 0 Replication-relaxation DUF2250 PF10007.9 gi|386002955|ref|YP_005921254.1| - 0.021 14.9 0.4 0.076 13.1 0.3 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4364 PF14277.6 gi|386002955|ref|YP_005921254.1| - 0.043 13.6 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_20 PF12840.7 gi|386002955|ref|YP_005921254.1| - 0.057 13.5 0.5 0.11 12.5 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1699 PF08004.11 gi|386002956|ref|YP_005921255.1| - 4e-57 191.5 0.0 4.5e-57 191.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1699 PF08004.11 gi|386002957|ref|YP_005921256.1| - 4.6e-58 194.5 0.0 5.2e-58 194.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1699 PF08004.11 gi|386002958|ref|YP_005921257.1| - 9.2e-57 190.3 0.0 1e-56 190.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1699 PF08004.11 gi|386002959|ref|YP_005921258.1| - 2.3e-59 198.7 0.0 2.5e-59 198.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF4198 PF10670.9 gi|386002960|ref|YP_005921259.1| - 1.2e-21 78.1 0.0 1.6e-21 77.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.6 gi|386002960|ref|YP_005921259.1| - 0.00059 20.1 0.0 0.0016 18.6 0.0 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|386002960|ref|YP_005921259.1| - 0.051 13.6 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) CarbopepD_reg_2 PF13715.6 gi|386002960|ref|YP_005921259.1| - 0.083 12.9 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 CarboxypepD_reg-like domain bMG3 PF11974.8 gi|386002960|ref|YP_005921259.1| - 0.16 12.0 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain DUF4198 PF10670.9 gi|386002961|ref|YP_005921260.1| - 3.2e-30 106.1 0.2 3.8e-30 105.9 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) bMG3 PF11974.8 gi|386002961|ref|YP_005921260.1| - 1.3e-05 25.1 0.0 3.5e-05 23.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial alpha-2-macroglobulin MG3 domain CarboxypepD_reg PF13620.6 gi|386002961|ref|YP_005921260.1| - 0.015 15.5 0.1 0.8 10.0 0.0 2.5 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain ABC_tran PF00005.27 gi|386002962|ref|YP_005921261.1| - 3.7e-15 56.6 0.0 5.3e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|386002962|ref|YP_005921261.1| - 2e-08 34.4 0.0 2.4e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|386002962|ref|YP_005921261.1| - 0.00045 19.7 0.0 0.00055 19.4 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|386002962|ref|YP_005921261.1| - 0.11 11.2 0.1 0.14 10.8 0.1 1.1 1 0 0 1 1 1 0 AAA domain CbiQ PF02361.16 gi|386002963|ref|YP_005921262.1| - 5.6e-34 117.7 9.8 6e-34 117.6 9.3 1.3 1 1 0 1 1 1 1 Cobalt transport protein Wzy_C PF04932.15 gi|386002963|ref|YP_005921262.1| - 4.8 6.8 12.0 8.4 6.0 11.9 1.5 1 1 0 1 1 1 0 O-Antigen ligase bMG3 PF11974.8 gi|386002964|ref|YP_005921263.1| - 0.0019 18.2 0.0 0.0026 17.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain CarboxypepD_reg PF13620.6 gi|386002964|ref|YP_005921263.1| - 0.023 14.9 0.7 0.03 14.6 0.7 1.3 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain DUF4198 PF10670.9 gi|386002965|ref|YP_005921264.1| - 0.00063 20.2 0.0 0.00085 19.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.6 gi|386002965|ref|YP_005921264.1| - 0.0095 16.2 0.1 0.014 15.7 0.1 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain bMG3 PF11974.8 gi|386002965|ref|YP_005921264.1| - 0.034 14.2 0.0 0.047 13.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain Big_1 PF02369.16 gi|386002965|ref|YP_005921264.1| - 0.064 13.3 0.0 0.097 12.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) TTR-52 PF01060.23 gi|386002965|ref|YP_005921264.1| - 0.084 13.6 0.0 0.11 13.2 0.0 1.2 1 0 0 1 1 1 0 Transthyretin-like family Pollen_Ole_e_I PF01190.17 gi|386002965|ref|YP_005921264.1| - 0.12 12.8 0.0 0.17 12.3 0.0 1.2 1 0 0 1 1 1 0 Pollen proteins Ole e I like Transthyretin PF00576.21 gi|386002965|ref|YP_005921264.1| - 0.13 13.0 0.0 0.17 12.6 0.0 1.1 1 0 0 1 1 1 0 HIUase/Transthyretin family CbiM PF01891.16 gi|386002966|ref|YP_005921265.1| - 2.3e-49 168.0 19.5 2.6e-49 167.9 19.5 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF4198 PF10670.9 gi|386002967|ref|YP_005921266.1| - 5.1e-11 43.4 0.0 1.1e-10 42.2 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) DUF4198 PF10670.9 gi|386002968|ref|YP_005921267.1| - 5.3e-16 59.6 2.4 5.3e-16 59.6 2.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) YtkA PF13115.6 gi|386002968|ref|YP_005921267.1| - 0.13 12.9 1.1 0.84 10.3 0.5 2.5 2 1 1 3 3 3 0 YtkA-like DUF4198 PF10670.9 gi|386002969|ref|YP_005921268.1| - 2.3e-23 83.7 1.3 2.9e-23 83.3 1.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) DUF362 PF04015.12 gi|386002970|ref|YP_005921269.1| - 5e-37 128.1 0.2 7.1e-37 127.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) YwiC PF14256.6 gi|386002970|ref|YP_005921269.1| - 0.015 15.6 2.4 0.015 15.6 2.4 4.2 3 1 0 3 3 3 0 YwiC-like protein His_biosynth PF00977.21 gi|386002971|ref|YP_005921270.1| - 5.5e-78 261.6 0.4 6.3e-78 261.4 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|386002971|ref|YP_005921270.1| - 4.6e-06 25.9 0.1 0.065 12.3 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|386002971|ref|YP_005921270.1| - 1.5e-05 24.4 4.0 0.02 14.2 0.9 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|386002971|ref|YP_005921270.1| - 0.00013 21.1 2.5 0.059 12.4 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|386002971|ref|YP_005921270.1| - 0.0012 18.2 1.2 1.2 8.4 0.0 2.5 2 1 0 2 2 2 2 Thiamine monophosphate synthase NMO PF03060.15 gi|386002971|ref|YP_005921270.1| - 0.0015 18.0 8.3 0.049 13.0 1.9 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|386002971|ref|YP_005921270.1| - 0.0021 17.5 0.5 0.17 11.3 0.2 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|386002971|ref|YP_005921270.1| - 0.0047 16.2 0.4 0.15 11.2 0.1 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase DeoC PF01791.9 gi|386002971|ref|YP_005921270.1| - 1.3 8.5 4.0 11 5.5 0.5 2.7 2 2 0 2 2 2 0 DeoC/LacD family aldolase DUF11 PF01345.18 gi|386002972|ref|YP_005921271.1| - 2.3e-28 98.3 16.8 7e-08 32.7 1.8 6.9 5 1 1 6 6 6 5 Domain of unknown function DUF11 Chlam_OMP6 PF03504.13 gi|386002972|ref|YP_005921271.1| - 0.00071 19.8 0.1 6.9 7.0 0.0 4.3 4 0 0 4 4 4 2 Chlamydia cysteine-rich outer membrane protein 6 bMG10 PF17973.1 gi|386002972|ref|YP_005921271.1| - 0.0016 18.6 0.5 13 6.0 0.0 4.8 5 0 0 5 5 5 1 Bacterial Alpha-2-macroglobulin MG10 domain Glyco_hydro_2 PF00703.21 gi|386002973|ref|YP_005921272.1| - 0.019 15.6 0.2 0.18 12.5 0.1 2.4 1 1 1 2 2 2 0 Glycosyl hydrolases family 2 DUF3324 PF11797.8 gi|386002973|ref|YP_005921272.1| - 0.036 14.0 0.0 0.067 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function C-terminal (DUF3324) CopC PF04234.12 gi|386002973|ref|YP_005921272.1| - 0.09 13.8 0.2 0.31 12.1 0.1 1.9 2 1 0 2 2 2 0 CopC domain Acylphosphatase PF00708.18 gi|386002974|ref|YP_005921273.1| - 7.6e-22 77.5 0.2 1.6e-21 76.5 0.2 1.6 1 0 0 1 1 1 1 Acylphosphatase DUF3552 PF12072.8 gi|386002974|ref|YP_005921273.1| - 0.043 13.2 18.3 0.02 14.3 11.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF16 PF01519.16 gi|386002974|ref|YP_005921273.1| - 0.14 12.7 18.6 49 4.5 18.4 2.6 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF1664 PF07889.12 gi|386002974|ref|YP_005921273.1| - 0.51 10.4 14.2 2.3 8.3 6.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Exonuc_VII_L PF02601.15 gi|386002974|ref|YP_005921273.1| - 1.4 8.4 8.3 2.4 7.7 7.9 1.4 1 1 0 1 1 1 0 Exonuclease VII, large subunit DUF948 PF06103.11 gi|386002974|ref|YP_005921273.1| - 3.2 8.1 8.2 3.2 8.1 0.2 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) PMC2NT PF08066.12 gi|386002974|ref|YP_005921273.1| - 9.6 7.0 19.4 5 7.9 1.4 3.9 1 1 0 2 2 2 0 PMC2NT (NUC016) domain DUF333 PF03891.15 gi|386002975|ref|YP_005921274.1| - 2.7e-19 69.1 0.0 5e-19 68.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF333) Lactamase_B PF00753.27 gi|386002976|ref|YP_005921275.1| - 4.4e-10 39.9 2.5 1.1e-08 35.4 2.5 2.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily STAS PF01740.21 gi|386002977|ref|YP_005921276.1| - 1.5e-16 60.0 0.0 1.9e-16 59.8 0.0 1.0 1 0 0 1 1 1 1 STAS domain STAS_2 PF13466.6 gi|386002977|ref|YP_005921276.1| - 5.9e-11 42.6 0.0 7.4e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 STAS domain SpoIIE PF07228.12 gi|386002978|ref|YP_005921277.1| - 3.6e-54 183.6 2.1 4.8e-54 183.2 0.7 1.8 2 0 0 2 2 2 1 Stage II sporulation protein E (SpoIIE) 5TM-5TMR_LYT PF07694.12 gi|386002978|ref|YP_005921277.1| - 4.1e-45 153.3 13.2 6.1e-45 152.8 13.2 1.3 1 0 0 1 1 1 1 5TMR of 5TMR-LYT DUF3948 PF13134.6 gi|386002978|ref|YP_005921277.1| - 4.3 7.1 5.8 1.7 8.4 1.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3948) ECF-ribofla_trS PF07155.12 gi|386002978|ref|YP_005921277.1| - 6.3 6.8 14.1 0.72 9.8 9.6 1.8 2 0 0 2 2 2 0 ECF-type riboflavin transporter, S component HATPase_c_2 PF13581.6 gi|386002979|ref|YP_005921278.1| - 1.9e-16 60.1 0.1 2.3e-16 59.9 0.1 1.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Xan_ur_permease PF00860.20 gi|386002980|ref|YP_005921279.1| - 7e-60 202.8 33.6 1e-59 202.2 33.6 1.2 1 0 0 1 1 1 1 Permease family DUF3464 PF11947.8 gi|386002980|ref|YP_005921279.1| - 3.1 7.6 3.9 4.2 7.1 0.2 2.7 2 0 0 2 2 2 0 Photosynthesis affected mutant 68 OTCace_N PF02729.21 gi|386002982|ref|YP_005921281.1| - 5.9e-51 172.4 0.0 1.1e-50 171.5 0.0 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|386002982|ref|YP_005921281.1| - 6.9e-51 172.4 0.0 9.7e-51 171.9 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Molydop_binding PF01568.21 gi|386002983|ref|YP_005921282.1| - 2.1e-07 30.9 0.0 2.3e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TPP_enzyme_M PF00205.22 gi|386002984|ref|YP_005921283.1| - 0.064 13.0 0.1 4.4 7.0 0.1 3.0 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain FeS PF04060.13 gi|386002985|ref|YP_005921284.1| - 1.5e-14 53.4 2.3 1.5e-14 53.4 2.3 2.4 2 0 0 2 2 1 1 Putative Fe-S cluster Fer4 PF00037.27 gi|386002985|ref|YP_005921284.1| - 1.4e-08 34.2 20.4 3.3e-07 29.8 4.6 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386002985|ref|YP_005921284.1| - 1.2e-06 29.0 20.5 5.1e-05 23.8 7.8 3.2 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386002985|ref|YP_005921284.1| - 2.3e-06 27.6 18.7 1.5e-05 25.0 12.4 3.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|386002985|ref|YP_005921284.1| - 0.00021 21.2 4.5 0.00021 21.2 4.5 3.6 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386002985|ref|YP_005921284.1| - 0.00025 21.0 3.6 0.00025 21.0 3.6 3.5 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|386002985|ref|YP_005921284.1| - 0.00025 21.5 3.6 0.00025 21.5 3.6 3.1 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386002985|ref|YP_005921284.1| - 0.00026 21.1 10.0 0.00026 21.1 10.0 3.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386002985|ref|YP_005921284.1| - 0.0019 18.6 16.6 0.024 15.1 10.4 3.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386002985|ref|YP_005921284.1| - 0.0046 17.7 0.7 0.0046 17.7 0.7 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|386002985|ref|YP_005921284.1| - 0.0087 16.2 3.3 0.0087 16.2 3.3 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386002985|ref|YP_005921284.1| - 0.014 15.8 3.1 0.014 15.8 3.1 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386002985|ref|YP_005921284.1| - 0.017 16.0 2.7 0.017 16.0 2.7 3.2 2 2 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|386002985|ref|YP_005921284.1| - 0.091 13.7 7.5 0.091 13.7 7.5 3.8 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|386002985|ref|YP_005921284.1| - 0.31 11.6 14.6 0.2 12.2 7.9 3.2 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I BatA PF07584.11 gi|386002986|ref|YP_005921285.1| - 8.4e-17 61.3 4.7 8.4e-17 61.3 4.7 2.2 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|386002986|ref|YP_005921285.1| - 0.019 15.6 0.1 0.038 14.6 0.1 1.5 1 0 0 1 1 1 0 von Willebrand factor type A domain GATase1_like PF07090.11 gi|386002987|ref|YP_005921286.1| - 2.7e-13 50.0 0.0 9.3e-05 22.0 0.0 3.2 3 0 0 3 3 3 2 Putative glutamine amidotransferase VWA_2 PF13519.6 gi|386002987|ref|YP_005921286.1| - 9.6e-11 42.3 0.0 3.7e-10 40.4 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|386002987|ref|YP_005921286.1| - 2.3e-10 41.0 0.0 0.00012 22.4 0.0 2.3 2 0 0 2 2 2 2 von Willebrand factor type A domain DUF4350 PF14258.6 gi|386002987|ref|YP_005921286.1| - 0.095 13.1 0.3 4.9 7.7 0.1 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) BatA PF07584.11 gi|386002987|ref|YP_005921286.1| - 8.3 6.9 10.5 1 9.8 1.3 2.8 2 1 1 3 3 3 0 Aerotolerance regulator N-terminal SUI1 PF01253.22 gi|386002988|ref|YP_005921287.1| - 6.4e-22 77.9 0.6 8.1e-22 77.5 0.6 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|386002988|ref|YP_005921287.1| - 0.00069 19.9 0.5 0.0012 19.1 0.5 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|386002988|ref|YP_005921287.1| - 0.047 13.4 1.1 0.059 13.1 1.1 1.2 1 0 0 1 1 1 0 DTW domain PP1_inhibitor PF05361.12 gi|386002988|ref|YP_005921287.1| - 0.09 12.8 0.3 0.1 12.6 0.3 1.3 1 1 0 1 1 1 0 PKC-activated protein phosphatase-1 inhibitor LSM PF01423.22 gi|386002990|ref|YP_005921289.1| - 1.1e-17 63.4 0.8 1.2e-17 63.3 0.8 1.0 1 0 0 1 1 1 1 LSM domain NifU PF01106.17 gi|386002991|ref|YP_005921290.1| - 7.6e-25 86.9 0.9 8.7e-25 86.7 0.9 1.0 1 0 0 1 1 1 1 NifU-like domain FeS_assembly_P PF01883.19 gi|386002991|ref|YP_005921290.1| - 0.013 15.6 0.1 0.041 14.0 0.1 1.8 1 1 0 1 1 1 0 Iron-sulfur cluster assembly protein Nit_Regul_Hom PF10126.9 gi|386002992|ref|YP_005921291.1| - 2.3e-44 149.8 0.0 2.5e-44 149.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII PgpA PF04608.13 gi|386002993|ref|YP_005921292.1| - 1.8e-08 34.5 0.1 1.2e-07 31.8 0.1 1.9 1 1 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.15 gi|386002994|ref|YP_005921293.1| - 6.2e-35 121.3 22.0 7.8e-35 120.9 22.0 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.7 gi|386002995|ref|YP_005921294.1| - 6.2e-18 65.7 0.3 1.2e-17 64.7 0.2 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|386002995|ref|YP_005921294.1| - 6.2e-07 29.6 0.0 1.2e-06 28.7 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|386002995|ref|YP_005921294.1| - 7.1e-05 22.6 0.0 0.00086 19.1 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|386002995|ref|YP_005921294.1| - 0.0092 15.6 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.16 gi|386002995|ref|YP_005921294.1| - 0.062 12.5 0.0 0.098 11.8 0.0 1.3 1 0 0 1 1 1 0 Guanylyl transferase CofC like DUF3945 PF13101.6 gi|386002996|ref|YP_005921295.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3945) CdhD PF03599.16 gi|386002997|ref|YP_005921296.1| - 6.9e-133 443.1 0.0 8.3e-133 442.8 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|386002997|ref|YP_005921296.1| - 3.5e-14 52.1 1.7 8.4e-14 50.9 1.7 1.7 1 0 0 1 1 1 1 Putative Fe-S cluster CdhD PF03599.16 gi|386002998|ref|YP_005921297.1| - 8.8e-78 261.7 3.3 4.3e-74 249.5 0.8 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit CbiA PF01656.23 gi|386002999|ref|YP_005921298.1| - 2e-18 66.7 0.2 2.6e-18 66.3 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|386002999|ref|YP_005921298.1| - 3.8e-16 59.5 0.3 5.3e-16 59.0 0.3 1.2 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|386002999|ref|YP_005921298.1| - 6.1e-10 38.8 0.2 9.5e-10 38.1 0.2 1.4 1 1 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|386002999|ref|YP_005921298.1| - 1.3e-08 34.7 1.8 8.7e-08 31.9 1.8 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|386002999|ref|YP_005921298.1| - 1.2e-07 31.5 0.2 0.0032 17.0 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|386002999|ref|YP_005921298.1| - 2e-06 27.4 0.0 0.0074 15.8 0.0 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ MeaB PF03308.16 gi|386002999|ref|YP_005921298.1| - 1.3e-05 24.3 0.9 2.6e-05 23.4 0.9 1.7 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF87 PF01935.17 gi|386002999|ref|YP_005921298.1| - 9.7e-05 22.6 0.3 0.00052 20.2 0.1 2.0 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_24 PF13479.6 gi|386002999|ref|YP_005921298.1| - 0.00015 21.6 0.1 0.00019 21.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|386002999|ref|YP_005921298.1| - 0.00018 20.9 3.0 0.057 12.7 0.2 2.7 2 1 1 3 3 3 2 ATPase MipZ SRP54 PF00448.22 gi|386002999|ref|YP_005921298.1| - 0.00053 19.7 3.7 0.055 13.1 0.6 2.8 2 1 1 3 3 3 1 SRP54-type protein, GTPase domain Toprim PF01751.22 gi|386002999|ref|YP_005921298.1| - 0.00057 20.1 0.5 0.052 13.8 0.0 2.4 2 0 0 2 2 2 1 Toprim domain AAA_30 PF13604.6 gi|386002999|ref|YP_005921298.1| - 0.00066 19.5 0.1 0.0012 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|386002999|ref|YP_005921298.1| - 0.0038 17.5 0.1 0.01 16.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.6 gi|386002999|ref|YP_005921298.1| - 0.005 16.7 2.3 0.45 10.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|386002999|ref|YP_005921298.1| - 0.0094 16.5 0.2 0.025 15.1 0.2 1.9 1 1 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|386002999|ref|YP_005921298.1| - 0.01 16.2 0.0 0.02 15.3 0.0 1.6 2 0 0 2 2 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|386002999|ref|YP_005921298.1| - 0.011 16.1 2.9 0.03 14.6 2.9 2.1 1 1 0 1 1 1 0 AAA domain TrkA_N PF02254.18 gi|386002999|ref|YP_005921298.1| - 0.018 15.3 0.7 1.9 8.8 0.1 2.4 2 0 0 2 2 2 0 TrkA-N domain HTH_3 PF01381.22 gi|386002999|ref|YP_005921298.1| - 0.023 14.8 0.1 0.059 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix PRK PF00485.18 gi|386002999|ref|YP_005921298.1| - 0.023 14.4 0.1 0.067 12.9 0.1 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF2075 PF09848.9 gi|386002999|ref|YP_005921298.1| - 0.027 13.7 0.2 0.13 11.5 0.2 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|386002999|ref|YP_005921298.1| - 0.029 14.4 0.1 0.14 12.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|386002999|ref|YP_005921298.1| - 0.031 14.2 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Ras PF00071.22 gi|386002999|ref|YP_005921298.1| - 0.032 13.8 0.1 1.4 8.5 0.0 2.1 2 0 0 2 2 2 0 Ras family Pox_A32 PF04665.12 gi|386002999|ref|YP_005921298.1| - 0.037 13.5 0.6 2.1 7.7 0.0 2.4 2 1 0 2 2 2 0 Poxvirus A32 protein ATPase PF06745.13 gi|386002999|ref|YP_005921298.1| - 0.04 13.3 0.1 0.13 11.6 0.0 1.8 2 0 0 2 2 2 0 KaiC Toprim_2 PF13155.6 gi|386002999|ref|YP_005921298.1| - 0.042 14.3 0.2 12 6.4 0.0 2.5 2 1 0 2 2 2 0 Toprim-like Toprim_4 PF13662.6 gi|386002999|ref|YP_005921298.1| - 0.049 14.1 0.1 0.2 12.2 0.0 2.0 2 0 0 2 2 1 0 Toprim domain ResIII PF04851.15 gi|386002999|ref|YP_005921298.1| - 0.052 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PIF1 PF05970.14 gi|386002999|ref|YP_005921298.1| - 0.071 12.3 0.3 0.12 11.5 0.3 1.4 1 0 0 1 1 1 0 PIF1-like helicase Helicase_RecD PF05127.14 gi|386002999|ref|YP_005921298.1| - 0.11 12.3 0.0 0.38 10.6 0.0 1.9 2 0 0 2 2 2 0 Helicase AAA_7 PF12775.7 gi|386002999|ref|YP_005921298.1| - 0.12 11.8 0.0 0.3 10.6 0.0 1.7 2 0 0 2 2 1 0 P-loop containing dynein motor region TrwB_AAD_bind PF10412.9 gi|386002999|ref|YP_005921298.1| - 0.18 10.7 0.3 0.27 10.1 0.3 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain LpxK PF02606.14 gi|386002999|ref|YP_005921298.1| - 0.32 10.1 1.3 0.46 9.5 0.6 1.5 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase NB-ARC PF00931.22 gi|386002999|ref|YP_005921298.1| - 0.38 9.9 1.5 0.64 9.2 1.1 1.7 1 1 1 2 2 2 0 NB-ARC domain NTPase_1 PF03266.15 gi|386002999|ref|YP_005921298.1| - 0.64 9.9 3.9 2.9 7.8 1.5 2.3 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|386002999|ref|YP_005921298.1| - 2.9 7.4 5.4 1.1 8.8 1.0 2.5 2 2 1 3 3 3 0 AAA domain K_channel_TID PF07941.11 gi|386003000|ref|YP_005921299.1| - 0.13 12.8 5.6 0.2 12.1 5.6 1.3 1 0 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain Ribosomal_60s PF00428.19 gi|386003000|ref|YP_005921299.1| - 0.35 11.5 10.5 0.27 11.8 8.8 1.6 2 0 0 2 2 2 0 60s Acidic ribosomal protein CdhC PF03598.15 gi|386003001|ref|YP_005921300.1| - 2.5e-54 183.4 0.3 3.9e-54 182.7 0.3 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit RPA_C PF08784.11 gi|386003001|ref|YP_005921300.1| - 0.029 15.0 0.0 0.058 14.0 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal RNA_pol_Rpc34 PF05158.12 gi|386003001|ref|YP_005921300.1| - 0.12 11.7 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit CO_dh PF02552.16 gi|386003002|ref|YP_005921301.1| - 1.4e-36 125.9 0.1 1.5e-36 125.7 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|386003002|ref|YP_005921301.1| - 0.00021 21.0 0.0 0.00055 19.7 0.0 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.20 gi|386003003|ref|YP_005921302.1| - 2.1e-88 297.3 0.5 6.2e-72 242.9 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_9 PF13187.6 gi|386003003|ref|YP_005921302.1| - 4.2e-07 30.0 5.7 4.2e-07 30.0 5.7 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386003003|ref|YP_005921302.1| - 1e-06 29.5 5.8 0.018 16.0 0.5 3.6 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|386003003|ref|YP_005921302.1| - 4.8e-06 26.6 19.3 3.8e-05 23.7 10.6 3.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386003003|ref|YP_005921302.1| - 4.7e-05 23.7 13.9 0.0053 17.2 1.1 3.9 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|386003003|ref|YP_005921302.1| - 8.5e-05 23.0 17.3 0.0053 17.3 0.6 3.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386003003|ref|YP_005921302.1| - 0.00063 19.4 21.4 0.0018 18.0 3.8 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386003003|ref|YP_005921302.1| - 0.0092 16.0 28.5 0.021 14.9 3.9 4.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386003003|ref|YP_005921302.1| - 0.012 15.7 2.6 0.012 15.7 2.6 4.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|386003003|ref|YP_005921302.1| - 0.014 15.2 7.5 0.014 15.2 7.5 2.5 2 1 1 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_7 PF12838.7 gi|386003003|ref|YP_005921302.1| - 0.017 15.7 14.2 0.017 15.7 14.2 3.8 3 1 1 4 4 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|386003003|ref|YP_005921302.1| - 0.019 15.1 12.3 0.055 13.7 0.4 3.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|386003003|ref|YP_005921302.1| - 0.53 10.5 23.6 0.34 11.1 13.9 3.9 3 1 1 4 4 4 0 4Fe-4S dicluster domain Aminotran_1_2 PF00155.21 gi|386003004|ref|YP_005921303.1| - 1e-27 97.3 0.0 1.1e-27 97.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|386003004|ref|YP_005921303.1| - 0.0017 17.4 0.0 0.0023 17.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|386003005|ref|YP_005921304.1| - 5.9e-06 25.7 0.0 6.2e-06 25.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II PaaX PF07848.12 gi|386003005|ref|YP_005921304.1| - 0.064 13.5 0.1 0.11 12.7 0.1 1.6 1 0 0 1 1 1 0 PaaX-like protein zf-like PF04071.12 gi|386003006|ref|YP_005921305.1| - 1.8e-18 66.2 3.7 2e-18 66.1 3.7 1.1 1 0 0 1 1 1 1 Cysteine-rich small domain CobD_Cbib PF03186.13 gi|386003007|ref|YP_005921306.1| - 4.7e-86 288.4 0.5 5.9e-86 288.1 0.5 1.1 1 0 0 1 1 1 1 CobD/Cbib protein Fe-S_biosyn PF01521.20 gi|386003008|ref|YP_005921307.1| - 1.9e-05 24.8 0.1 4.6e-05 23.6 0.1 1.6 1 1 0 1 1 1 1 Iron-sulphur cluster biosynthesis NTP_transf_2 PF01909.23 gi|386003011|ref|YP_005921310.1| - 3.6e-14 52.8 0.1 4e-14 52.7 0.1 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|386003011|ref|YP_005921310.1| - 2.8e-10 40.1 0.0 3.2e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase PIN PF01850.21 gi|386003012|ref|YP_005921311.1| - 3.9e-06 27.4 0.2 6.9e-06 26.6 0.2 1.4 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|386003012|ref|YP_005921311.1| - 0.0017 19.1 0.0 0.0021 18.8 0.0 1.3 1 1 0 1 1 1 1 PIN domain SCAB-ABD PF16711.5 gi|386003012|ref|YP_005921311.1| - 0.021 14.7 0.1 0.035 14.0 0.1 1.3 1 0 0 1 1 1 0 Actin-binding domain of plant-specific actin-binding protein PIN_12 PF16289.5 gi|386003012|ref|YP_005921311.1| - 0.19 12.2 0.0 0.23 12.0 0.0 1.1 1 0 0 1 1 1 0 PIN domain DUF104 PF01954.16 gi|386003013|ref|YP_005921312.1| - 4.2e-13 49.5 3.9 6.1e-13 49.0 3.9 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF104 NTP_transf_2 PF01909.23 gi|386003014|ref|YP_005921313.1| - 3.7e-11 43.2 0.0 4.4e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|386003014|ref|YP_005921313.1| - 1.6e-09 37.7 0.0 1.9e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MdcG PF10620.9 gi|386003014|ref|YP_005921313.1| - 0.091 12.5 0.2 0.22 11.3 0.2 1.6 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DUF86 PF01934.17 gi|386003015|ref|YP_005921314.1| - 2e-25 88.9 1.8 2.4e-25 88.7 1.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 ABC_tran PF00005.27 gi|386003016|ref|YP_005921315.1| - 5.6e-33 114.4 0.0 8.7e-33 113.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|386003016|ref|YP_005921315.1| - 4.1e-10 39.8 0.0 2.1e-09 37.5 0.0 2.3 3 0 0 3 3 1 1 TOBE domain TOBE_2 PF08402.10 gi|386003016|ref|YP_005921315.1| - 4.1e-08 33.3 0.0 9e-08 32.2 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|386003016|ref|YP_005921315.1| - 1.5e-07 31.5 0.1 0.011 15.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|386003016|ref|YP_005921315.1| - 0.00012 21.6 0.0 0.0029 17.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|386003016|ref|YP_005921315.1| - 0.002 18.6 0.0 0.0049 17.3 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|386003016|ref|YP_005921315.1| - 0.0074 16.6 0.0 0.021 15.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|386003016|ref|YP_005921315.1| - 0.0079 15.6 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|386003016|ref|YP_005921315.1| - 0.014 14.5 0.0 0.022 13.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|386003016|ref|YP_005921315.1| - 0.015 15.0 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|386003016|ref|YP_005921315.1| - 0.016 15.7 0.0 0.027 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|386003016|ref|YP_005921315.1| - 0.037 13.8 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arc_PepC_II PF06847.11 gi|386003016|ref|YP_005921315.1| - 0.053 14.0 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 Archaeal Peptidase A24 C-terminus Type II NACHT PF05729.12 gi|386003016|ref|YP_005921315.1| - 0.09 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|386003016|ref|YP_005921315.1| - 0.12 12.8 0.2 0.51 10.8 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|386003016|ref|YP_005921315.1| - 0.13 11.7 0.1 0.96 8.9 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein SRP54 PF00448.22 gi|386003016|ref|YP_005921315.1| - 0.17 11.5 0.0 0.57 9.8 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DEAD PF00270.29 gi|386003016|ref|YP_005921315.1| - 0.17 11.7 0.0 0.28 10.9 0.0 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_14 PF13173.6 gi|386003016|ref|YP_005921315.1| - 0.17 11.9 0.0 0.47 10.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|386003016|ref|YP_005921315.1| - 0.22 11.5 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit BPD_transp_1 PF00528.22 gi|386003017|ref|YP_005921316.1| - 7e-20 71.5 8.1 9.5e-20 71.1 8.1 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|386003018|ref|YP_005921317.1| - 6.2e-46 157.0 0.0 7.2e-46 156.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|386003018|ref|YP_005921317.1| - 3.9e-05 23.4 0.0 0.00011 21.9 0.0 1.8 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_1 PF01547.25 gi|386003018|ref|YP_005921317.1| - 0.083 12.8 0.1 1.8 8.5 0.1 2.3 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|386003018|ref|YP_005921317.1| - 0.16 11.4 0.0 0.3 10.5 0.0 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein Fer4 PF00037.27 gi|386003019|ref|YP_005921318.1| - 7.6e-14 50.9 16.8 3.2e-07 29.9 2.6 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|386003019|ref|YP_005921318.1| - 2e-10 40.3 16.5 4.2e-06 26.6 2.7 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|386003019|ref|YP_005921318.1| - 2.5e-10 39.8 18.2 9.7e-06 25.4 4.4 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|386003019|ref|YP_005921318.1| - 5.8e-10 39.6 27.4 4.2e-07 30.4 15.7 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386003019|ref|YP_005921318.1| - 6.3e-10 39.0 26.3 1.3e-07 31.6 14.4 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|386003019|ref|YP_005921318.1| - 6.7e-10 39.0 22.4 7.6e-07 29.2 13.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386003019|ref|YP_005921318.1| - 1.2e-07 31.6 19.6 0.00017 21.9 3.5 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|386003019|ref|YP_005921318.1| - 1.5e-07 32.3 11.7 0.0011 19.9 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|386003019|ref|YP_005921318.1| - 2.5e-06 27.5 13.0 0.002 18.2 1.0 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|386003019|ref|YP_005921318.1| - 5.4e-05 23.4 12.4 0.00041 20.5 12.6 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386003019|ref|YP_005921318.1| - 9e-05 22.9 11.0 0.016 15.7 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|386003019|ref|YP_005921318.1| - 0.00019 22.1 23.3 0.011 16.6 5.0 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|386003019|ref|YP_005921318.1| - 0.00024 21.6 13.6 0.61 10.7 2.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386003019|ref|YP_005921318.1| - 0.0029 18.0 17.4 0.099 13.1 4.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain NIL PF09383.10 gi|386003019|ref|YP_005921318.1| - 0.0084 15.9 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 NIL domain Furin-like_2 PF15913.5 gi|386003019|ref|YP_005921318.1| - 0.045 13.9 6.1 0.12 12.5 6.1 1.7 1 1 0 1 1 1 0 Furin-like repeat, cysteine-rich Trp_syntA PF00290.20 gi|386003019|ref|YP_005921318.1| - 0.084 11.7 0.2 0.11 11.3 0.2 1.1 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Fer4_22 PF17179.4 gi|386003019|ref|YP_005921318.1| - 0.35 11.7 17.2 1.6 9.6 4.2 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|386003019|ref|YP_005921318.1| - 0.6 10.9 13.2 2.4 8.9 2.3 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain zf-C2H2_11 PF16622.5 gi|386003019|ref|YP_005921318.1| - 6 6.7 12.0 9.7 6.0 1.8 2.3 2 0 0 2 2 2 0 zinc-finger C2H2-type ETF_QO PF05187.13 gi|386003019|ref|YP_005921318.1| - 9.8 6.4 8.5 8.2 6.6 1.1 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S HcyBio PF01837.16 gi|386003020|ref|YP_005921319.1| - 6.2e-137 456.1 0.0 7.6e-137 455.8 0.0 1.1 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|386003020|ref|YP_005921319.1| - 3.2e-24 85.1 1.1 4.7e-11 43.0 0.1 2.7 2 0 0 2 2 2 2 CBS domain Radical_SAM PF04055.21 gi|386003021|ref|YP_005921320.1| - 2.2e-09 37.9 0.0 5.7e-09 36.6 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|386003021|ref|YP_005921320.1| - 0.13 12.3 0.0 0.29 11.2 0.0 1.7 1 1 0 1 1 1 0 B12 binding domain DUF2551 PF10826.8 gi|386003022|ref|YP_005921321.1| - 1.2e-29 102.4 0.2 1.4e-29 102.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.19 gi|386003022|ref|YP_005921321.1| - 0.0036 17.5 0.1 0.0043 17.2 0.1 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family Fer4_14 PF13394.6 gi|386003023|ref|YP_005921322.1| - 1.8e-06 28.1 0.0 2.9e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|386003023|ref|YP_005921322.1| - 2.3e-06 28.1 0.0 9.7e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|386003023|ref|YP_005921322.1| - 3.8e-06 27.2 0.0 6e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain SRP54 PF00448.22 gi|386003024|ref|YP_005921323.1| - 6.6e-70 234.7 2.5 1e-69 234.1 2.5 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|386003024|ref|YP_005921323.1| - 5.6e-28 97.5 1.9 5.6e-28 97.5 1.9 2.5 1 1 1 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|386003024|ref|YP_005921323.1| - 1.5e-21 76.4 1.1 6.3e-21 74.4 0.1 2.6 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|386003024|ref|YP_005921323.1| - 7.7e-07 29.2 0.0 4.8e-06 26.6 0.0 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|386003024|ref|YP_005921323.1| - 7.4e-06 25.7 1.8 0.00021 21.0 1.8 2.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|386003024|ref|YP_005921323.1| - 9.9e-05 21.4 0.2 0.00026 20.1 0.2 1.7 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|386003024|ref|YP_005921323.1| - 0.00088 19.1 0.0 0.0025 17.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|386003024|ref|YP_005921323.1| - 0.0015 18.5 0.0 0.0042 17.0 0.0 1.8 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|386003024|ref|YP_005921323.1| - 0.0027 17.9 0.1 0.0095 16.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|386003024|ref|YP_005921323.1| - 0.0031 18.1 0.1 0.0098 16.4 0.0 2.0 2 1 0 2 2 1 1 AAA domain TrwB_AAD_bind PF10412.9 gi|386003024|ref|YP_005921323.1| - 0.0037 16.2 0.0 0.0085 15.0 0.0 1.6 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|386003024|ref|YP_005921323.1| - 0.0038 17.6 0.3 0.013 15.9 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|386003024|ref|YP_005921323.1| - 0.0038 16.5 0.0 0.0078 15.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin MMR_HSR1 PF01926.23 gi|386003024|ref|YP_005921323.1| - 0.0044 17.1 0.7 0.043 13.9 0.7 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_8 PF12780.7 gi|386003024|ref|YP_005921323.1| - 0.0047 16.3 0.2 0.12 11.7 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region D4 AAA_30 PF13604.6 gi|386003024|ref|YP_005921323.1| - 0.0049 16.6 1.2 0.011 15.4 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|386003024|ref|YP_005921323.1| - 0.0062 16.8 0.0 0.017 15.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|386003024|ref|YP_005921323.1| - 0.0079 16.1 0.2 0.023 14.6 0.0 1.9 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B MipZ PF09140.11 gi|386003024|ref|YP_005921323.1| - 0.01 15.2 0.2 2.8 7.2 0.0 2.4 2 0 0 2 2 2 0 ATPase MipZ 6PF2K PF01591.18 gi|386003024|ref|YP_005921323.1| - 0.019 14.3 0.0 0.043 13.1 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_31 PF13614.6 gi|386003024|ref|YP_005921323.1| - 0.019 14.9 0.7 0.16 11.9 0.7 2.5 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|386003024|ref|YP_005921323.1| - 0.028 13.9 0.0 0.071 12.5 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 SRPRB PF09439.10 gi|386003024|ref|YP_005921323.1| - 0.028 13.8 0.2 0.45 9.9 0.1 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit SPO22 PF08631.10 gi|386003024|ref|YP_005921323.1| - 0.042 13.3 0.0 0.084 12.3 0.0 1.4 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like AAA_28 PF13521.6 gi|386003024|ref|YP_005921323.1| - 0.051 13.8 0.9 0.21 11.8 0.3 2.4 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|386003024|ref|YP_005921323.1| - 0.073 12.7 0.1 0.21 11.2 0.1 1.8 1 0 0 1 1 1 0 Thymidylate kinase AAA_15 PF13175.6 gi|386003024|ref|YP_005921323.1| - 0.081 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|386003024|ref|YP_005921323.1| - 0.084 13.3 0.7 0.9 10.0 0.3 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|386003024|ref|YP_005921323.1| - 0.085 12.6 0.2 0.23 11.2 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.12 gi|386003024|ref|YP_005921323.1| - 0.09 12.7 0.1 0.2 11.6 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|386003024|ref|YP_005921323.1| - 0.094 12.7 0.1 0.34 10.9 0.1 2.0 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.9 gi|386003024|ref|YP_005921323.1| - 0.097 12.4 2.0 3.4 7.4 0.2 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation G-alpha PF00503.20 gi|386003024|ref|YP_005921323.1| - 0.16 11.1 0.0 0.32 10.1 0.0 1.7 1 1 0 1 1 1 0 G-protein alpha subunit AAA_26 PF13500.6 gi|386003024|ref|YP_005921323.1| - 0.3 10.9 2.1 5.4 6.8 0.3 2.4 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|386003024|ref|YP_005921323.1| - 1.5 8.3 5.8 1.4 8.5 2.3 2.7 2 1 0 2 2 1 0 AAA domain Prenyltransf PF01255.19 gi|386003025|ref|YP_005921324.1| - 4.2e-65 219.4 0.0 5e-65 219.2 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase TPR_16 PF13432.6 gi|386003025|ref|YP_005921324.1| - 0.075 13.7 1.5 1.3 9.8 0.3 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat eIF-1a PF01176.19 gi|386003026|ref|YP_005921325.1| - 3.1e-24 84.6 0.9 4.1e-24 84.2 0.9 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.22 gi|386003027|ref|YP_005921326.1| - 9.1e-63 211.3 0.0 1.4e-62 210.6 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|386003027|ref|YP_005921326.1| - 4.3e-05 23.0 0.0 8.7e-05 22.0 0.0 1.4 2 0 0 2 2 2 1 Protein kinase domain Kdo PF06293.14 gi|386003027|ref|YP_005921326.1| - 0.00015 21.2 0.0 0.0017 17.8 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|386003027|ref|YP_005921326.1| - 0.029 14.3 0.0 0.21 11.5 0.0 2.0 1 1 1 2 2 2 0 Phosphotransferase enzyme family KH_1 PF00013.29 gi|386003028|ref|YP_005921327.1| - 5.6e-12 45.3 5.0 1.7e-06 27.7 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|386003028|ref|YP_005921327.1| - 0.46 10.4 2.5 2 8.4 0.1 2.9 3 1 1 4 4 4 0 KH domain FdhD-NarQ PF02634.15 gi|386003029|ref|YP_005921328.1| - 5.9e-48 163.6 0.1 6.7e-46 156.9 0.1 2.0 1 1 0 1 1 1 1 FdhD/NarQ family Peptidase_M50 PF02163.22 gi|386003030|ref|YP_005921329.1| - 1.9e-19 70.0 0.0 6.2e-19 68.2 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|386003030|ref|YP_005921329.1| - 2.4e-10 40.6 0.1 2.4e-06 27.8 0.0 2.3 1 1 1 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|386003030|ref|YP_005921329.1| - 4.9e-06 26.3 0.4 0.014 15.3 0.0 2.3 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.24 gi|386003030|ref|YP_005921329.1| - 4.7e-05 23.6 0.0 0.00027 21.2 0.0 2.0 1 1 0 2 2 2 1 PDZ domain PDZ_1 PF12812.7 gi|386003030|ref|YP_005921329.1| - 0.0031 17.5 0.0 0.043 13.8 0.0 2.5 3 0 0 3 3 3 1 PDZ-like domain DUF3267 PF11667.8 gi|386003030|ref|YP_005921329.1| - 0.064 13.6 12.9 0.33 11.3 0.1 3.8 4 0 0 4 4 4 0 Putative zincin peptidase Hydantoinase_A PF01968.18 gi|386003031|ref|YP_005921330.1| - 2.8e-21 76.1 0.1 2.8e-21 76.1 0.1 1.4 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|386003031|ref|YP_005921330.1| - 0.0022 16.7 0.2 0.035 12.7 0.0 2.1 2 0 0 2 2 2 2 MutL protein FrhB_FdhB_C PF04432.13 gi|386003032|ref|YP_005921331.1| - 1.2e-37 129.1 0.0 1.8e-37 128.5 0.0 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|386003032|ref|YP_005921331.1| - 9.2e-21 73.8 2.3 1.3e-20 73.3 1.1 1.8 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_17 PF13534.6 gi|386003032|ref|YP_005921331.1| - 0.01 16.4 3.6 0.81 10.3 1.0 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|386003032|ref|YP_005921331.1| - 0.019 15.9 5.9 6.6 7.7 2.4 3.0 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|386003032|ref|YP_005921331.1| - 0.023 15.3 8.4 0.22 12.2 1.1 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|386003032|ref|YP_005921331.1| - 0.055 13.6 12.7 0.37 10.9 11.4 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|386003032|ref|YP_005921331.1| - 0.062 13.8 3.6 13 6.3 1.6 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|386003032|ref|YP_005921331.1| - 0.08 12.8 20.5 0.11 12.4 7.5 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|386003032|ref|YP_005921331.1| - 0.88 10.4 8.2 2.7 8.8 0.0 3.1 4 0 0 4 4 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|386003032|ref|YP_005921331.1| - 0.93 9.7 10.3 5.3 7.2 10.3 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|386003032|ref|YP_005921331.1| - 0.95 10.1 5.3 12 6.5 2.8 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_9 PF13187.6 gi|386003032|ref|YP_005921331.1| - 1.2 9.3 13.4 1.8 8.8 4.9 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|386003032|ref|YP_005921331.1| - 3.3 8.4 16.0 0.84 10.3 0.3 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain MMR_HSR1_C PF08438.10 gi|386003033|ref|YP_005921332.1| - 5e-31 107.6 0.0 8e-31 106.9 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|386003033|ref|YP_005921332.1| - 8.7e-20 70.9 0.0 4.8e-19 68.5 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|386003033|ref|YP_005921332.1| - 1.1e-12 47.8 0.0 2.6e-12 46.6 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|386003033|ref|YP_005921332.1| - 6.5e-08 32.3 0.1 5.8e-07 29.2 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B ThiS PF02597.20 gi|386003033|ref|YP_005921332.1| - 0.1 13.3 0.0 0.37 11.5 0.0 1.9 2 0 0 2 2 2 0 ThiS family MMR_HSR1_Xtn PF16897.5 gi|386003033|ref|YP_005921332.1| - 0.22 11.5 0.0 0.41 10.7 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Roc PF08477.13 gi|386003034|ref|YP_005921333.1| - 2.1e-19 69.9 0.0 5.3e-19 68.6 0.0 1.7 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|386003034|ref|YP_005921333.1| - 2.2e-18 66.3 0.0 4.4e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 Ras family Metallophos PF00149.28 gi|386003034|ref|YP_005921333.1| - 4.6e-15 56.7 1.1 1.1e-14 55.4 1.1 1.7 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase WD40 PF00400.32 gi|386003034|ref|YP_005921333.1| - 2.4e-07 31.3 1.9 5.1e-06 27.1 0.0 3.6 3 1 0 3 3 3 1 WD domain, G-beta repeat Arf PF00025.21 gi|386003034|ref|YP_005921333.1| - 5.3e-06 26.0 0.0 1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1 PF01926.23 gi|386003034|ref|YP_005921333.1| - 2.1e-05 24.6 0.0 0.00013 22.1 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase ANAPC4_WD40 PF12894.7 gi|386003034|ref|YP_005921333.1| - 3.9e-05 23.9 0.0 0.38 11.1 0.0 2.7 2 0 0 2 2 2 2 Anaphase-promoting complex subunit 4 WD40 domain Flavodoxin_2 PF02525.17 gi|386003035|ref|YP_005921334.1| - 0.00025 20.8 0.0 0.00028 20.7 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold AcetylCoA_hyd_C PF13336.6 gi|386003036|ref|YP_005921335.1| - 3.9e-62 208.7 0.0 6.4e-62 208.1 0.0 1.4 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.15 gi|386003036|ref|YP_005921335.1| - 1.6e-43 149.0 0.0 5.8e-43 147.2 0.0 1.8 1 1 1 2 2 2 1 Acetyl-CoA hydrolase/transferase N-terminal domain Acetyltransf_1 PF00583.25 gi|386003036|ref|YP_005921335.1| - 1e-09 38.6 0.1 3.1e-09 37.1 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|386003036|ref|YP_005921335.1| - 1e-07 32.2 0.0 2e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|386003036|ref|YP_005921335.1| - 1.9e-07 31.8 0.0 3.4e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|386003036|ref|YP_005921335.1| - 2.4e-05 24.6 0.0 6.9e-05 23.2 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|386003036|ref|YP_005921335.1| - 0.00078 19.4 0.1 0.0022 17.9 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|386003036|ref|YP_005921335.1| - 0.0024 17.8 0.0 0.0054 16.7 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Mal_decarbox_Al PF16957.5 gi|386003036|ref|YP_005921335.1| - 0.014 13.8 0.1 2.7 6.2 0.0 2.1 2 0 0 2 2 2 0 Malonate decarboxylase, alpha subunit, transporter Cpn60_TCP1 PF00118.24 gi|386003037|ref|YP_005921336.1| - 1.5e-167 558.2 19.2 1.7e-167 558.0 19.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3924 PF13062.6 gi|386003037|ref|YP_005921336.1| - 0.077 13.0 0.3 3.1 7.8 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3924) FbpA PF05833.11 gi|386003039|ref|YP_005921338.1| - 2.5e-75 254.0 0.0 3.2e-75 253.6 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|386003039|ref|YP_005921338.1| - 7.2e-24 84.5 0.0 1.2e-23 83.9 0.0 1.3 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|386003039|ref|YP_005921338.1| - 0.00048 20.3 0.0 0.0015 18.7 0.0 1.8 1 0 0 1 1 1 1 NFACT protein RNA binding domain Mut7-C PF01927.16 gi|386003040|ref|YP_005921339.1| - 4.4e-35 120.9 0.0 5e-35 120.7 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|386003040|ref|YP_005921339.1| - 0.00011 21.9 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_9 PF18477.1 gi|386003040|ref|YP_005921339.1| - 0.07 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 PIN like domain ACP_syn_III_C PF08541.10 gi|386003041|ref|YP_005921340.1| - 3.2e-18 65.7 0.0 3.3e-17 62.4 0.0 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 gi|386003041|ref|YP_005921340.1| - 2.1e-13 49.9 0.1 4.8e-13 48.8 0.1 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FAE1_CUT1_RppA PF08392.12 gi|386003041|ref|YP_005921340.1| - 0.00018 20.9 0.1 0.00059 19.2 0.0 1.8 2 1 0 2 2 2 1 FAE1/Type III polyketide synthase-like protein Chal_sti_synt_N PF00195.19 gi|386003041|ref|YP_005921340.1| - 0.00065 19.2 0.0 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 Chalcone and stilbene synthases, N-terminal domain Thiolase_N PF00108.23 gi|386003041|ref|YP_005921340.1| - 0.003 17.0 0.0 0.0068 15.8 0.0 1.5 1 1 0 1 1 1 1 Thiolase, N-terminal domain Methyltransf_25 PF13649.6 gi|386003042|ref|YP_005921341.1| - 6.4e-21 74.9 0.0 1.6e-20 73.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|386003042|ref|YP_005921341.1| - 8.3e-21 74.5 0.0 2e-20 73.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|386003042|ref|YP_005921341.1| - 6.9e-18 64.9 0.0 1e-17 64.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|386003042|ref|YP_005921341.1| - 2.3e-13 50.3 0.0 3.9e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|386003042|ref|YP_005921341.1| - 2.6e-13 50.6 0.0 5.7e-13 49.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|386003042|ref|YP_005921341.1| - 8.9e-13 48.1 0.0 1.3e-12 47.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|386003042|ref|YP_005921341.1| - 8.7e-07 28.6 0.0 1.5e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_9 PF08003.11 gi|386003042|ref|YP_005921341.1| - 4e-06 26.0 0.0 5.8e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|386003042|ref|YP_005921341.1| - 7.9e-06 25.5 0.0 1.5e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|386003042|ref|YP_005921341.1| - 7.5e-05 22.1 0.0 9.8e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|386003042|ref|YP_005921341.1| - 0.00053 20.0 0.0 0.00081 19.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|386003042|ref|YP_005921341.1| - 0.0026 17.5 0.0 0.0035 17.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|386003042|ref|YP_005921341.1| - 0.0062 16.0 0.0 0.0087 15.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|386003042|ref|YP_005921341.1| - 0.026 14.5 0.0 0.042 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.13 gi|386003042|ref|YP_005921341.1| - 0.19 11.2 0.0 0.28 10.7 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 ParE_toxin PF05016.15 gi|386003043|ref|YP_005921342.1| - 2.3e-05 24.9 0.0 3.2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE VAPB_antitox PF02697.14 gi|386003044|ref|YP_005921343.1| - 7.4e-07 29.9 0.1 7.9e-07 29.8 0.1 1.1 1 0 0 1 1 1 1 Putative antitoxin MatP_C PF17414.2 gi|386003044|ref|YP_005921343.1| - 0.052 13.7 0.1 0.061 13.5 0.1 1.2 1 0 0 1 1 1 0 MatP C-terminal ribbon-helix-helix domain HicB_lk_antitox PF15919.5 gi|386003045|ref|YP_005921344.1| - 8.2e-10 38.9 0.0 9.6e-10 38.6 0.0 1.0 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF1902 PF08972.11 gi|386003045|ref|YP_005921344.1| - 0.00077 19.4 0.0 0.00089 19.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) YnfE PF17452.2 gi|386003045|ref|YP_005921344.1| - 0.12 12.7 0.0 0.13 12.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized YnfE-like DUF3750 PF12570.8 gi|386003045|ref|YP_005921344.1| - 0.18 12.5 0.0 0.19 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3750) HicB_lk_antitox PF15919.5 gi|386003046|ref|YP_005921345.1| - 9.5e-05 22.5 0.0 0.00011 22.3 0.0 1.1 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system ParE_toxin PF05016.15 gi|386003047|ref|YP_005921346.1| - 8.4e-07 29.5 0.1 1.2e-06 29.0 0.1 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE ParE-like_toxin PF15781.5 gi|386003047|ref|YP_005921346.1| - 0.033 14.2 0.2 0.043 13.8 0.2 1.2 1 0 0 1 1 1 0 ParE-like toxin of type II bacterial toxin-antitoxin system VAPB_antitox PF02697.14 gi|386003048|ref|YP_005921347.1| - 4.1e-05 24.3 0.0 4.4e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Putative antitoxin SIR2_2 PF13289.6 gi|386003049|ref|YP_005921348.1| - 3.2e-10 40.3 0.0 6.6e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 SIR2-like domain SIR2 PF02146.17 gi|386003049|ref|YP_005921348.1| - 0.0085 16.0 0.0 0.19 11.6 0.0 2.6 2 0 0 2 2 2 1 Sir2 family HAD PF12710.7 gi|386003049|ref|YP_005921348.1| - 0.023 15.1 0.1 0.071 13.5 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|386003050|ref|YP_005921349.1| - 7.4e-51 172.2 4.0 7.4e-51 172.2 4.0 3.1 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|386003050|ref|YP_005921349.1| - 6.9e-45 153.0 0.5 6.9e-45 153.0 0.5 2.1 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|386003050|ref|YP_005921349.1| - 1.6e-20 74.3 4.7 7.5e-20 72.1 4.7 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|386003050|ref|YP_005921349.1| - 1.9e-19 69.1 0.5 6.3e-19 67.4 0.0 2.2 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|386003050|ref|YP_005921349.1| - 2.4e-15 56.4 0.0 4.4e-15 55.5 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) Hydrolase_3 PF08282.12 gi|386003050|ref|YP_005921349.1| - 4.5e-05 23.3 0.4 0.003 17.4 0.3 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|386003050|ref|YP_005921349.1| - 0.00022 21.7 0.3 0.0013 19.1 0.0 2.6 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase PIG-F PF06699.11 gi|386003050|ref|YP_005921349.1| - 2 8.5 6.4 1.2 9.2 0.3 2.5 3 0 0 3 3 3 0 GPI biosynthesis protein family Pig-F UPF0146 PF03686.13 gi|386003051|ref|YP_005921350.1| - 2.4e-29 101.8 0.0 3e-29 101.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Thi4 PF01946.17 gi|386003052|ref|YP_005921351.1| - 1.4e-79 266.6 3.6 1.6e-79 266.4 3.6 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|386003052|ref|YP_005921351.1| - 1.9e-05 24.2 2.2 2.7e-05 23.7 2.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|386003052|ref|YP_005921351.1| - 0.00033 20.0 0.7 0.00056 19.2 0.6 1.6 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|386003052|ref|YP_005921351.1| - 0.00034 20.8 0.4 0.0015 18.7 0.4 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|386003052|ref|YP_005921351.1| - 0.0044 15.8 2.0 0.0064 15.2 2.0 1.2 1 0 0 1 1 1 1 HI0933-like protein K_oxygenase PF13434.6 gi|386003052|ref|YP_005921351.1| - 0.0071 15.5 0.0 0.013 14.7 0.0 1.4 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|386003052|ref|YP_005921351.1| - 0.01 15.1 0.1 0.014 14.7 0.1 1.4 1 1 0 1 1 1 0 FAD binding domain FAD_binding_2 PF00890.24 gi|386003052|ref|YP_005921351.1| - 0.012 14.7 1.2 0.012 14.7 1.2 2.7 3 0 0 3 3 3 0 FAD binding domain Lycopene_cycl PF05834.12 gi|386003052|ref|YP_005921351.1| - 0.094 11.7 2.1 0.11 11.6 0.2 1.9 2 1 1 3 3 3 0 Lycopene cyclase protein FtsZ_C PF12327.8 gi|386003053|ref|YP_005921352.1| - 4.3e-18 65.4 0.5 1e-17 64.2 0.2 1.9 2 0 0 2 2 2 1 FtsZ family, C-terminal domain UbiD PF01977.16 gi|386003054|ref|YP_005921353.1| - 7.1e-99 331.4 0.0 8.1e-99 331.2 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF1614 PF07758.11 gi|386003055|ref|YP_005921354.1| - 2.1e-57 193.9 15.6 2.1e-57 193.9 15.6 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) ParA PF10609.9 gi|386003056|ref|YP_005921355.1| - 2.1e-92 309.1 0.0 2.4e-92 308.9 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|386003056|ref|YP_005921355.1| - 3.2e-13 49.9 0.0 7.4e-13 48.7 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|386003056|ref|YP_005921355.1| - 8.1e-12 45.4 0.6 6.6e-11 42.4 0.6 2.0 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|386003056|ref|YP_005921355.1| - 8.6e-07 28.4 0.1 2e-06 27.2 0.2 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|386003056|ref|YP_005921355.1| - 5.8e-05 22.5 0.1 0.0001 21.7 0.1 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.6 gi|386003056|ref|YP_005921355.1| - 0.00094 18.8 0.1 0.0015 18.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|386003056|ref|YP_005921355.1| - 0.0083 15.6 0.1 0.014 14.8 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|386003056|ref|YP_005921355.1| - 0.009 15.3 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein CBP_BcsQ PF06564.12 gi|386003056|ref|YP_005921355.1| - 0.02 14.4 0.3 0.14 11.6 0.3 1.9 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ RsgA_GTPase PF03193.16 gi|386003056|ref|YP_005921355.1| - 0.022 14.7 0.4 0.034 14.1 0.4 1.3 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 gi|386003056|ref|YP_005921355.1| - 0.023 14.3 0.3 0.037 13.7 0.3 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|386003056|ref|YP_005921355.1| - 0.044 13.7 0.1 0.063 13.2 0.1 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase NB-ARC PF00931.22 gi|386003056|ref|YP_005921355.1| - 0.051 12.7 0.4 0.072 12.3 0.4 1.2 1 0 0 1 1 1 0 NB-ARC domain PhoH PF02562.16 gi|386003056|ref|YP_005921355.1| - 0.059 12.8 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein CLP1_P PF16575.5 gi|386003056|ref|YP_005921355.1| - 0.14 11.9 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NACHT PF05729.12 gi|386003056|ref|YP_005921355.1| - 0.4 10.6 0.8 0.61 10.0 0.8 1.2 1 0 0 1 1 1 0 NACHT domain MS_channel PF00924.18 gi|386003058|ref|YP_005921357.1| - 6.7e-43 146.6 0.1 9.7e-43 146.1 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|386003058|ref|YP_005921357.1| - 5 7.2 9.3 0.087 12.8 1.4 2.2 2 0 0 2 2 2 0 Conserved TM helix DUF99 PF01949.16 gi|386003059|ref|YP_005921358.1| - 3.4e-60 202.6 0.0 3.8e-60 202.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 S-layer PF07752.11 gi|386003062|ref|YP_005921361.1| - 0.0091 15.1 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 S-layer protein CbiX PF01903.17 gi|386003063|ref|YP_005921362.1| - 4.7e-25 88.0 0.0 5.9e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|386003063|ref|YP_005921362.1| - 0.00034 20.0 0.0 0.00038 19.9 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|386003063|ref|YP_005921362.1| - 0.24 10.4 0.0 0.28 10.2 0.0 1.1 1 0 0 1 1 1 0 Ferrochelatase Mur_ligase_M PF08245.12 gi|386003064|ref|YP_005921363.1| - 0.00012 22.1 0.4 0.00029 20.9 0.2 1.7 2 0 0 2 2 2 1 Mur ligase middle domain CbiA PF01656.23 gi|386003064|ref|YP_005921363.1| - 0.082 13.0 0.8 0.15 12.1 0.8 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Oxidored_nitro PF00148.19 gi|386003065|ref|YP_005921364.1| - 3.2e-20 72.2 0.5 8.1e-20 70.9 0.5 1.6 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SHOCT PF09851.9 gi|386003065|ref|YP_005921364.1| - 0.073 12.8 0.3 0.19 11.5 0.3 1.8 1 0 0 1 1 1 0 Short C-terminal domain SecE PF00584.20 gi|386003066|ref|YP_005921365.1| - 3.4e-06 26.9 0.0 4.7e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Na_Pi_cotrans PF02690.15 gi|386003067|ref|YP_005921366.1| - 1.1e-54 184.3 27.3 3.9e-38 130.7 6.8 2.3 1 1 1 2 2 2 2 Na+/Pi-cotransporter Iso_dh PF00180.20 gi|386003068|ref|YP_005921367.1| - 1.5e-90 303.9 0.0 8e-90 301.5 0.0 1.8 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.19 gi|386003070|ref|YP_005921369.1| - 2.8e-20 73.0 0.0 3.7e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain IlvN PF07991.12 gi|386003070|ref|YP_005921369.1| - 0.036 13.6 0.1 0.052 13.1 0.1 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_harundinacea_6Ac_uid81199/NC_017527.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_harundinacea_6Ac_uid81199/NC_017527.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_harundinacea_6Ac_uid81199/NC_017527.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanosaeta_harundinacea_6Ac_uid81199/NC_017527.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:07:09 2019 # [ok]