#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
LRR_3	PF07725.7	gi|386003072|ref|YP_005064092.1|	-	0.03	14.0	0.0	0.042	13.5	0.0	1.2	1	0	0	1	1	1	0	Leucine	Rich	Repeat
ZZ	PF00569.12	gi|386003074|ref|YP_005064094.1|	-	0.0022	17.4	0.4	0.0031	17.0	0.2	1.3	1	0	0	1	1	1	1	Zinc	finger,	ZZ	type
Prim-Pol	PF09250.6	gi|386003076|ref|YP_005064096.1|	-	0.00061	19.7	0.0	0.0015	18.4	0.0	1.6	1	0	0	1	1	1	1	Bifunctional	DNA	primase/polymerase,	N-terminal
RHH_1	PF01402.16	gi|386003082|ref|YP_005064102.1|	-	2.5e-08	33.4	0.0	8.6e-08	31.7	0.0	1.9	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Arc	PF03869.9	gi|386003082|ref|YP_005064102.1|	-	0.00063	19.3	0.0	0.0015	18.0	0.0	1.7	1	0	0	1	1	1	1	Arc-like	DNA	binding	domain
RHH_3	PF12651.2	gi|386003082|ref|YP_005064102.1|	-	0.0016	18.1	0.1	0.0029	17.3	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
HTH_40	PF14493.1	gi|386003082|ref|YP_005064102.1|	-	0.021	15.0	0.3	4.4	7.6	0.0	3.0	2	1	1	3	3	3	0	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|386003082|ref|YP_005064102.1|	-	0.025	14.1	0.4	0.63	9.6	0.1	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|386003082|ref|YP_005064102.1|	-	0.025	14.7	1.6	0.57	10.3	0.0	2.5	1	1	0	2	2	2	0	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|386003082|ref|YP_005064102.1|	-	0.061	12.9	3.0	0.13	11.9	0.0	2.8	3	1	0	3	3	3	0	Homeodomain-like	domain
HTH_28	PF13518.1	gi|386003082|ref|YP_005064102.1|	-	0.065	13.2	2.0	0.8	9.7	0.1	2.7	3	0	0	3	3	3	0	Helix-turn-helix	domain
DUF2510	PF10708.4	gi|386003082|ref|YP_005064102.1|	-	0.077	12.4	0.0	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2510)
HTH_Tnp_ISL3	PF13542.1	gi|386003082|ref|YP_005064102.1|	-	0.098	11.8	0.0	0.79	8.9	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
RuvA_C	PF07499.8	gi|386003082|ref|YP_005064102.1|	-	0.87	9.8	5.9	5.8	7.1	0.1	3.5	4	0	0	4	4	4	0	RuvA,	C-terminal	domain
DUF2191	PF09957.4	gi|386003085|ref|YP_005064105.1|	-	0.1	12.4	0.4	0.87	9.4	0.0	2.4	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
SNase	PF00565.12	gi|386003086|ref|YP_005064106.1|	-	4.7e-10	39.7	0.0	7.8e-10	38.9	0.0	1.4	1	1	0	1	1	1	1	Staphylococcal	nuclease	homologue
Ada_Zn_binding	PF02805.11	gi|386003086|ref|YP_005064106.1|	-	4.3e-05	23.0	0.1	7e-05	22.3	0.1	1.3	1	0	0	1	1	1	1	Metal	binding	domain	of	Ada
AvrB_AvrC	PF05394.6	gi|386003087|ref|YP_005064107.1|	-	0.0065	15.4	0.1	0.008	15.1	0.0	1.1	1	0	0	1	1	1	1	Avirulence	protein
mRNA_cap_C	PF03919.10	gi|386003087|ref|YP_005064107.1|	-	0.0085	16.4	0.7	0.013	15.8	0.5	1.4	1	0	0	1	1	1	1	mRNA	capping	enzyme,	C-terminal	domain
N6_N4_Mtase	PF01555.13	gi|386003089|ref|YP_005064109.1|	-	1.9e-38	132.2	0.0	2.4e-38	131.9	0.0	1.1	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|386003089|ref|YP_005064109.1|	-	0.0005	20.0	0.0	0.055	13.5	0.0	2.3	2	0	0	2	2	2	2	Methyltransferase	domain
UPF0020	PF01170.13	gi|386003089|ref|YP_005064109.1|	-	0.18	11.3	0.1	3.2	7.3	0.0	2.3	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020