# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|435849689|ref|YP_007301630.1| - 5.9e-17 61.1 0.0 1.4e-16 59.9 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|435849689|ref|YP_007301630.1| - 4e-09 36.6 0.0 8.6e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|435849689|ref|YP_007301630.1| - 1.4e-07 31.4 1.1 2e-07 30.9 0.2 1.6 2 0 0 2 2 2 1 Archaeal ATPase AAA PF00004.24 gi|435849689|ref|YP_007301630.1| - 1.9e-07 31.3 0.2 4.4e-07 30.1 0.1 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|435849689|ref|YP_007301630.1| - 1.4e-05 24.8 0.0 4.4e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|435849689|ref|YP_007301630.1| - 3e-05 23.7 0.0 5e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.1 gi|435849689|ref|YP_007301630.1| - 0.00047 20.1 0.0 0.0049 16.8 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain Pox_D5 PF03288.11 gi|435849689|ref|YP_007301630.1| - 0.00071 19.7 0.0 0.0024 18.0 0.0 1.9 2 0 0 2 2 1 1 Poxvirus D5 protein-like AAA_2 PF07724.9 gi|435849689|ref|YP_007301630.1| - 0.0012 18.8 0.5 0.0042 17.0 0.3 1.9 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.16 gi|435849689|ref|YP_007301630.1| - 0.0037 16.4 0.0 0.0068 15.5 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Mg_chelatase_2 PF13335.1 gi|435849689|ref|YP_007301630.1| - 0.0073 16.6 0.2 0.014 15.7 0.1 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|435849689|ref|YP_007301630.1| - 0.0085 15.0 0.1 0.018 13.9 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|435849689|ref|YP_007301630.1| - 0.0097 15.4 0.5 1.1 8.7 0.1 2.3 1 1 0 2 2 2 1 DEAD/DEAH box helicase DUF87 PF01935.12 gi|435849689|ref|YP_007301630.1| - 0.012 15.4 0.7 0.042 13.6 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF87 Sigma54_activat PF00158.21 gi|435849689|ref|YP_007301630.1| - 0.013 15.0 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|435849689|ref|YP_007301630.1| - 0.016 15.3 1.0 0.37 11.0 0.7 2.5 1 1 0 1 1 1 0 RNA helicase DUF2075 PF09848.4 gi|435849689|ref|YP_007301630.1| - 0.016 14.2 0.0 0.031 13.2 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.2 gi|435849689|ref|YP_007301630.1| - 0.028 13.8 0.5 0.4 10.0 0.3 2.2 1 1 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|435849689|ref|YP_007301630.1| - 0.029 13.8 0.0 0.069 12.6 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|435849689|ref|YP_007301630.1| - 0.08 12.3 0.1 0.36 10.2 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein RFX_DNA_binding PF02257.10 gi|435849689|ref|YP_007301630.1| - 0.09 12.9 0.0 0.29 11.3 0.0 1.8 2 0 0 2 2 2 0 RFX DNA-binding domain DUF815 PF05673.8 gi|435849689|ref|YP_007301630.1| - 0.093 11.6 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PhoH PF02562.11 gi|435849689|ref|YP_007301630.1| - 0.12 11.6 3.6 0.76 8.9 0.9 2.8 2 1 0 2 2 2 0 PhoH-like protein Torsin PF06309.6 gi|435849689|ref|YP_007301630.1| - 0.13 12.1 0.5 1.4 8.7 0.1 2.3 1 1 1 2 2 2 0 Torsin AAA_24 PF13479.1 gi|435849689|ref|YP_007301630.1| - 0.56 9.7 3.2 3.8 7.0 0.7 3.0 1 1 2 3 3 3 0 AAA domain DEAD PF00270.24 gi|435849690|ref|YP_007301631.1| - 8e-29 100.2 0.5 5.2e-28 97.6 0.0 2.6 3 1 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|435849690|ref|YP_007301631.1| - 4.4e-10 39.2 0.0 1.2e-09 37.8 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DSHCT PF08148.7 gi|435849690|ref|YP_007301631.1| - 0.024 13.9 0.2 0.19 10.9 0.0 2.5 2 0 0 2 2 2 0 DSHCT (NUC185) domain tRNA_anti-codon PF01336.20 gi|435849693|ref|YP_007301634.1| - 0.023 14.5 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain zf-C2H2_6 PF13912.1 gi|435849695|ref|YP_007301636.1| - 0.091 12.6 0.4 0.16 11.8 0.2 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger DUF1273 PF06908.6 gi|435849697|ref|YP_007301638.1| - 2.5e-20 72.8 0.0 3.3e-20 72.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1273) DNA_processg_A PF02481.10 gi|435849697|ref|YP_007301638.1| - 3.1e-08 32.7 0.0 3.5e-08 32.6 0.0 1.0 1 0 0 1 1 1 1 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|435849697|ref|YP_007301638.1| - 0.026 14.3 0.1 0.048 13.5 0.0 1.6 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase MoCo_carrier PF12694.2 gi|435849697|ref|YP_007301638.1| - 0.1 12.0 0.0 0.19 11.1 0.0 1.7 1 1 0 1 1 1 0 Putative molybdenum carrier RNase_HII PF01351.13 gi|435849698|ref|YP_007301639.1| - 8.2e-25 87.6 0.2 9.2e-24 84.1 0.1 2.1 1 1 0 1 1 1 1 Ribonuclease HII PQ-loop PF04193.9 gi|435849699|ref|YP_007301640.1| - 0.16 11.5 0.9 0.3 10.6 0.6 1.5 1 1 0 1 1 1 0 PQ loop repeat DUF4313 PF14190.1 gi|435849700|ref|YP_007301641.1| - 0.00039 20.0 0.0 0.00051 19.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4313) OrfB_IS605 PF01385.14 gi|435849702|ref|YP_007301643.1| - 3.9e-24 85.2 7.2 1.1e-23 83.8 5.0 1.7 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849702|ref|YP_007301643.1| - 2.7e-21 74.9 2.5 6.1e-21 73.8 1.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849702|ref|YP_007301643.1| - 1.5e-07 30.5 0.0 3.9e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain C1_1 PF00130.17 gi|435849702|ref|YP_007301643.1| - 0.0064 16.2 1.0 0.014 15.0 0.7 1.6 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Band_3_cyto PF07565.8 gi|435849702|ref|YP_007301643.1| - 0.11 12.0 0.1 0.31 10.5 0.1 1.7 2 0 0 2 2 2 0 Band 3 cytoplasmic domain FYVE PF01363.16 gi|435849702|ref|YP_007301643.1| - 0.98 9.3 7.1 0.17 11.8 1.2 2.2 2 0 0 2 2 2 0 FYVE zinc finger OrfB_IS605 PF01385.14 gi|435849704|ref|YP_007301645.1| - 4.6e-24 85.0 8.8 9.2e-24 84.0 6.1 1.4 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849704|ref|YP_007301645.1| - 2.8e-21 74.9 1.0 5.3e-21 74.0 0.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849704|ref|YP_007301645.1| - 1.5e-09 37.0 0.0 1e-08 34.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|435849704|ref|YP_007301645.1| - 0.67 9.3 4.5 1.4 8.3 3.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding End3 PF12761.2 gi|435849705|ref|YP_007301646.1| - 0.13 11.9 0.9 0.15 11.6 0.6 1.1 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 DUF1825 PF08855.5 gi|435849705|ref|YP_007301646.1| - 0.17 11.9 0.6 3.1 7.8 0.0 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF1825) DUF4375 PF14300.1 gi|435849705|ref|YP_007301646.1| - 2.4 8.1 4.6 7.3 6.6 3.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4375) NRDD PF13597.1 gi|435849708|ref|YP_007301649.1| - 5.1e-155 516.6 0.0 6.1e-155 516.3 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|435849708|ref|YP_007301649.1| - 0.0018 18.6 0.1 0.0038 17.6 0.0 1.5 1 0 0 1 1 1 1 ATP cone domain MCM PF00493.18 gi|435849709|ref|YP_007301650.1| - 2e-124 414.7 0.1 2.9e-124 414.2 0.1 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|435849709|ref|YP_007301650.1| - 4e-11 43.4 0.1 2.3e-10 41.0 0.0 2.4 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|435849709|ref|YP_007301650.1| - 6.9e-08 31.8 0.1 4.3e-05 22.7 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|435849709|ref|YP_007301650.1| - 2.8e-06 27.0 0.0 3.9e-05 23.4 0.0 2.9 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|435849709|ref|YP_007301650.1| - 9.8e-05 21.9 0.0 0.00036 20.1 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|435849709|ref|YP_007301650.1| - 0.00043 19.7 0.0 0.0074 15.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_22 PF13401.1 gi|435849709|ref|YP_007301650.1| - 0.0097 16.0 0.5 0.38 10.8 0.0 3.0 2 1 0 2 2 2 1 AAA domain Lipocalin_5 PF13924.1 gi|435849709|ref|YP_007301650.1| - 0.12 12.1 0.0 0.38 10.4 0.0 1.8 2 0 0 2 2 2 0 Lipocalin-like domain Cdc6_C PF09079.6 gi|435849710|ref|YP_007301651.1| - 9.9e-12 44.4 0.1 2.9e-11 42.9 0.0 1.8 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|435849710|ref|YP_007301651.1| - 3.1e-07 30.6 0.2 1.3e-06 28.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|435849710|ref|YP_007301651.1| - 0.00019 21.5 0.0 0.00038 20.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain DUF815 PF05673.8 gi|435849710|ref|YP_007301651.1| - 0.00039 19.4 0.0 0.0044 15.9 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RFX_DNA_binding PF02257.10 gi|435849710|ref|YP_007301651.1| - 0.0058 16.7 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 RFX DNA-binding domain NB-ARC PF00931.17 gi|435849710|ref|YP_007301651.1| - 0.0062 15.4 1.2 0.011 14.6 0.7 1.7 1 1 0 1 1 1 1 NB-ARC domain AAA PF00004.24 gi|435849710|ref|YP_007301651.1| - 0.063 13.4 0.3 0.21 11.7 0.0 2.2 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|435849710|ref|YP_007301651.1| - 0.18 11.7 3.7 0.86 9.5 2.2 2.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase tRNA_lig_kinase PF08303.6 gi|435849710|ref|YP_007301651.1| - 0.28 11.0 6.2 0.19 11.6 0.8 2.9 1 1 2 3 3 3 0 tRNA ligase kinase domain CT47 PF15623.1 gi|435849711|ref|YP_007301652.1| - 0.0093 15.7 0.1 0.0095 15.7 0.0 1.0 1 0 0 1 1 1 1 Cancer/testis gene family 47 PilX_N PF14341.1 gi|435849712|ref|YP_007301653.1| - 2.6 7.7 7.5 7.4 6.3 5.2 1.7 1 1 0 1 1 1 0 PilX N-terminal Rnf-Nqr PF02508.9 gi|435849715|ref|YP_007301656.1| - 0.076 12.5 0.9 0.077 12.5 0.6 1.0 1 0 0 1 1 1 0 Rnf-Nqr subunit, membrane protein MinE PF03776.9 gi|435849721|ref|YP_007301662.1| - 0.047 13.1 0.3 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 Septum formation topological specificity factor MinE DUF98 PF01947.11 gi|435849723|ref|YP_007301664.1| - 0.092 12.4 0.1 1.2 8.8 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF98) VirB3 PF05101.8 gi|435849726|ref|YP_007301667.1| - 5.6 7.0 14.1 7 6.7 2.2 2.1 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein IncA PF04156.9 gi|435849727|ref|YP_007301668.1| - 1.4 8.4 10.9 2.4 7.7 7.6 1.3 1 0 0 1 1 1 0 IncA protein Methyltransf_PK PF05891.7 gi|435849728|ref|YP_007301669.1| - 0.095 11.9 0.0 0.12 11.6 0.0 1.3 1 1 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Acetyltransf_7 PF13508.1 gi|435849729|ref|YP_007301670.1| - 0.00039 20.5 0.0 0.0007 19.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain TK PF00265.13 gi|435849729|ref|YP_007301670.1| - 0.03 13.8 0.3 0.042 13.4 0.2 1.2 1 0 0 1 1 1 0 Thymidine kinase Acetyltransf_1 PF00583.19 gi|435849729|ref|YP_007301670.1| - 0.053 13.5 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family DUF2812 PF11193.3 gi|435849729|ref|YP_007301670.1| - 0.067 13.3 0.2 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2812) Cag12 PF13117.1 gi|435849729|ref|YP_007301670.1| - 0.081 12.8 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Cag pathogenicity island protein Cag12 FR47 PF08445.5 gi|435849729|ref|YP_007301670.1| - 0.094 12.4 0.0 0.25 11.1 0.0 1.7 2 0 0 2 2 2 0 FR47-like protein MipZ PF09140.6 gi|435849731|ref|YP_007301672.1| - 7.9e-07 28.4 0.3 7.6e-06 25.1 0.1 2.2 2 1 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|435849731|ref|YP_007301672.1| - 1.5e-06 27.4 0.5 0.0071 15.4 0.1 2.5 2 0 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|435849731|ref|YP_007301672.1| - 4.6e-06 26.1 6.0 0.00013 21.4 0.2 2.7 3 1 0 3 3 3 2 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|435849731|ref|YP_007301672.1| - 0.00028 20.1 3.2 0.07 12.3 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|435849731|ref|YP_007301672.1| - 0.0011 18.9 0.3 0.0057 16.6 0.0 2.3 3 0 0 3 3 3 1 AAA domain APS_kinase PF01583.15 gi|435849731|ref|YP_007301672.1| - 0.061 12.9 0.0 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase FeoA PF04023.9 gi|435849732|ref|YP_007301673.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 FeoA domain PRRSV_2b PF07069.6 gi|435849734|ref|YP_007301675.1| - 0.068 13.4 1.4 0.11 12.8 0.9 1.3 1 0 0 1 1 1 0 Porcine reproductive and respiratory syndrome virus 2b Topoisom_bac PF01131.15 gi|435849735|ref|YP_007301676.1| - 2.3e-35 122.2 0.0 3.8e-35 121.4 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|435849735|ref|YP_007301676.1| - 8.7e-09 34.7 2.1 3.4e-08 32.8 1.4 2.1 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|435849735|ref|YP_007301676.1| - 0.0038 17.1 0.1 0.041 13.8 0.0 2.7 3 0 0 3 3 3 1 Toprim domain CarboxypepD_reg PF13620.1 gi|435849736|ref|YP_007301677.1| - 3.7e-09 36.5 2.0 3.7e-09 36.5 1.4 2.7 3 1 0 3 3 3 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|435849736|ref|YP_007301677.1| - 0.00013 21.9 0.3 0.00013 21.9 0.2 3.3 3 1 0 3 3 3 1 Domain of unknown function (DUF4480) DNA_primase_S PF01896.14 gi|435849738|ref|YP_007301679.1| - 2.3e-05 24.2 0.3 0.0049 16.6 0.0 2.6 2 2 0 2 2 2 1 Eukaryotic and archaeal DNA primase small subunit Endonuc-BsobI PF09194.5 gi|435849739|ref|YP_007301680.1| - 0.058 12.3 0.0 0.094 11.6 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease BsobI TraS PF10624.4 gi|435849739|ref|YP_007301680.1| - 0.13 11.8 2.4 0.45 10.0 1.7 1.9 1 0 0 1 1 1 0 Plasmid conjugative transfer entry exclusion protein TraS Neurensin PF14927.1 gi|435849739|ref|YP_007301680.1| - 7.9 5.8 7.1 0.51 9.7 0.1 2.5 3 0 0 3 3 3 0 Neurensin DUF500 PF04366.7 gi|435849740|ref|YP_007301681.1| - 0.11 11.9 0.0 0.11 11.9 0.0 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF500) AAA_10 PF12846.2 gi|435849741|ref|YP_007301682.1| - 2.4e-23 83.0 0.0 4.1e-23 82.2 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|435849741|ref|YP_007301682.1| - 3.6e-07 30.2 0.8 3.8e-06 26.8 0.0 3.0 3 1 0 3 3 3 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|435849741|ref|YP_007301682.1| - 1.1e-05 24.0 0.0 1.7e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|435849741|ref|YP_007301682.1| - 0.0007 18.3 0.0 0.0013 17.4 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.24 gi|435849741|ref|YP_007301682.1| - 0.00092 18.7 0.0 0.003 17.0 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|435849741|ref|YP_007301682.1| - 0.0021 17.8 1.6 0.0038 17.0 0.1 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.13 gi|435849741|ref|YP_007301682.1| - 0.0053 16.2 0.1 0.015 14.8 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family T2SE PF00437.15 gi|435849741|ref|YP_007301682.1| - 0.012 14.5 0.9 0.038 12.8 0.1 2.3 2 1 0 2 2 2 0 Type II/IV secretion system protein DUF4658 PF15555.1 gi|435849742|ref|YP_007301683.1| - 0.062 13.1 0.1 0.098 12.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4658) Myc_target_1 PF15179.1 gi|435849742|ref|YP_007301683.1| - 0.066 12.7 0.1 0.16 11.5 0.1 1.6 1 0 0 1 1 1 0 Myc target protein 1 DUF1282 PF06930.7 gi|435849747|ref|YP_007301688.1| - 0.035 13.7 0.9 0.11 12.1 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1282) DUF3575 PF12099.3 gi|435849749|ref|YP_007301690.1| - 0.12 11.4 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3575) T2SE PF00437.15 gi|435849750|ref|YP_007301691.1| - 3.6e-16 58.8 0.1 8.2e-16 57.7 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF2265 PF10023.4 gi|435849751|ref|YP_007301692.1| - 0.045 12.8 0.1 0.057 12.5 0.1 1.2 1 0 0 1 1 1 0 Predicted aminopeptidase (DUF2265) Y1_Tnp PF01797.11 gi|435849752|ref|YP_007301693.1| - 2.8e-24 85.2 0.9 3e-24 85.1 0.6 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.14 gi|435849753|ref|YP_007301694.1| - 7.6e-46 156.3 2.5 1.3e-45 155.5 1.8 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849753|ref|YP_007301694.1| - 4.2e-24 83.9 0.1 9.4e-24 82.8 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849753|ref|YP_007301694.1| - 1.8e-22 78.3 0.2 3.5e-22 77.4 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain A2L_zn_ribbon PF08792.5 gi|435849753|ref|YP_007301694.1| - 0.0043 16.4 1.4 0.0088 15.4 0.9 1.5 1 0 0 1 1 1 1 A2L zinc ribbon domain Prok-RING_1 PF14446.1 gi|435849753|ref|YP_007301694.1| - 0.04 13.6 1.0 0.078 12.7 0.7 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|435849753|ref|YP_007301694.1| - 0.045 13.4 0.0 0.092 12.4 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RanBP PF00641.13 gi|435849753|ref|YP_007301694.1| - 0.059 12.4 6.3 0.94 8.6 1.2 2.6 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others DZR PF12773.2 gi|435849753|ref|YP_007301694.1| - 0.092 12.5 0.7 0.18 11.6 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|435849753|ref|YP_007301694.1| - 1.6 8.6 5.2 17 5.3 3.6 2.4 1 1 0 1 1 1 0 Rubredoxin HTH_34 PF13601.1 gi|435849755|ref|YP_007301696.1| - 7.6e-06 25.8 3.6 0.00018 21.4 0.3 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|435849755|ref|YP_007301696.1| - 8.8e-06 25.4 6.4 0.00038 20.2 0.7 2.1 2 0 0 2 2 2 2 Winged helix-turn-helix HTH_24 PF13412.1 gi|435849755|ref|YP_007301696.1| - 7.1e-05 22.1 0.6 0.025 13.9 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|435849755|ref|YP_007301696.1| - 7.1e-05 23.0 0.2 0.00016 21.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|435849755|ref|YP_007301696.1| - 0.00015 21.4 2.2 0.00023 20.8 1.5 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_5 PF01022.15 gi|435849755|ref|YP_007301696.1| - 0.00068 19.2 0.6 0.073 12.7 0.1 2.4 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|435849755|ref|YP_007301696.1| - 0.00078 19.0 0.1 0.018 14.7 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|435849755|ref|YP_007301696.1| - 0.003 17.1 0.5 0.15 11.7 0.0 2.1 2 0 0 2 2 2 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|435849755|ref|YP_007301696.1| - 0.0058 16.3 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|435849755|ref|YP_007301696.1| - 0.0086 15.8 0.1 0.75 9.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Mrr_N PF14338.1 gi|435849755|ref|YP_007301696.1| - 0.011 15.7 0.3 0.032 14.3 0.0 1.9 2 1 1 3 3 2 0 Mrr N-terminal domain HTH_Crp_2 PF13545.1 gi|435849755|ref|YP_007301696.1| - 0.016 14.9 0.1 0.08 12.7 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF2513 PF10711.4 gi|435849755|ref|YP_007301696.1| - 0.026 14.6 0.7 0.055 13.5 0.1 1.8 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) DUF2250 PF10007.4 gi|435849755|ref|YP_007301696.1| - 0.028 14.3 0.9 0.63 9.9 0.2 2.6 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) COP-gamma_platf PF08752.5 gi|435849755|ref|YP_007301696.1| - 0.038 13.8 3.2 0.74 9.6 0.0 2.5 1 1 2 3 3 3 0 Coatomer gamma subunit appendage platform subdomain IF2_N PF04760.10 gi|435849755|ref|YP_007301696.1| - 0.042 13.4 3.5 0.53 9.9 0.1 2.8 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region MarR PF01047.17 gi|435849755|ref|YP_007301696.1| - 0.059 13.0 0.2 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 MarR family Fe-S_assembly PF04384.8 gi|435849756|ref|YP_007301697.1| - 0.061 13.6 0.5 3.9 7.9 0.1 2.9 2 1 1 3 3 3 0 Iron-sulphur cluster assembly AAA_13 PF13166.1 gi|435849757|ref|YP_007301698.1| - 3e-07 29.3 57.7 0.0011 17.6 13.7 2.3 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|435849757|ref|YP_007301698.1| - 5.9e-06 26.7 32.0 5.9e-06 26.7 22.2 4.4 1 1 2 3 3 2 1 AAA domain Reo_sigmaC PF04582.7 gi|435849757|ref|YP_007301698.1| - 0.00012 21.4 19.9 0.0077 15.4 3.7 2.6 2 1 0 2 2 2 2 Reovirus sigma C capsid protein zf-CpG_bind_C PF12269.3 gi|435849757|ref|YP_007301698.1| - 0.00057 19.4 6.2 0.00057 19.4 4.3 3.1 2 1 1 4 4 4 1 CpG binding protein zinc finger C terminal domain Sec8_exocyst PF04048.9 gi|435849757|ref|YP_007301698.1| - 0.0038 16.8 0.2 0.0038 16.8 0.2 5.2 2 2 2 5 5 5 1 Sec8 exocyst complex component specific domain Spc7 PF08317.6 gi|435849757|ref|YP_007301698.1| - 0.034 12.8 62.0 0.05 12.2 20.2 3.8 2 2 0 2 2 2 0 Spc7 kinetochore protein TMF_TATA_bd PF12325.3 gi|435849757|ref|YP_007301698.1| - 0.057 13.1 43.0 0.84 9.3 5.4 5.6 2 2 3 5 5 5 0 TATA element modulatory factor 1 TATA binding Atg14 PF10186.4 gi|435849757|ref|YP_007301698.1| - 0.065 12.1 50.3 0.92 8.3 14.8 4.4 2 2 2 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 Zn-ribbon_8 PF09723.5 gi|435849757|ref|YP_007301698.1| - 0.086 12.8 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Rad50_zn_hook PF04423.9 gi|435849757|ref|YP_007301698.1| - 0.2 11.1 0.0 0.2 11.1 0.0 5.9 5 2 1 6 6 6 0 Rad50 zinc hook motif Mnd1 PF03962.10 gi|435849757|ref|YP_007301698.1| - 0.61 9.7 47.8 0.09 12.4 6.8 4.8 1 1 3 4 4 4 0 Mnd1 family HALZ PF02183.13 gi|435849757|ref|YP_007301698.1| - 0.93 9.2 14.7 2.8 7.7 0.0 5.1 4 1 1 5 5 5 0 Homeobox associated leucine zipper Myosin_tail_1 PF01576.14 gi|435849757|ref|YP_007301698.1| - 1.2 6.7 50.2 0.058 11.1 9.0 3.2 2 1 1 3 3 3 0 Myosin tail Baculo_PEP_C PF04513.7 gi|435849757|ref|YP_007301698.1| - 5.5 6.8 34.6 0.64 9.8 5.1 4.5 2 2 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4055 PF13264.1 gi|435849757|ref|YP_007301698.1| - 7 6.7 13.4 11 6.1 1.3 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4055) IncA PF04156.9 gi|435849757|ref|YP_007301698.1| - 7.4 6.1 43.5 33 3.9 16.2 3.9 1 1 2 3 3 3 0 IncA protein Glutaredoxin PF00462.19 gi|435849758|ref|YP_007301699.1| - 7.3e-07 29.0 0.1 0.0013 18.6 0.0 3.0 2 1 0 2 2 2 2 Glutaredoxin Thioredoxin PF00085.15 gi|435849758|ref|YP_007301699.1| - 0.00059 19.4 0.1 1.1 8.9 0.0 2.5 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|435849758|ref|YP_007301699.1| - 0.001 19.2 0.4 3 8.0 0.0 3.0 2 1 0 2 2 2 2 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|435849758|ref|YP_007301699.1| - 0.12 12.5 2.3 11 6.2 0.1 3.3 3 1 0 3 3 3 0 Thioredoxin-like Peptidase_M50 PF02163.17 gi|435849759|ref|YP_007301700.1| - 2.1e-26 92.0 0.0 8.7e-26 90.0 0.0 2.0 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|435849759|ref|YP_007301700.1| - 1.2e-19 70.0 2.7 1.7e-10 40.6 0.6 2.3 2 0 0 2 2 2 2 PDZ domain PDZ PF00595.19 gi|435849759|ref|YP_007301700.1| - 0.0001 22.4 4.8 0.023 14.8 1.3 2.6 1 1 1 2 2 2 2 PDZ domain (Also known as DHR or GLGF) PDZ_1 PF12812.2 gi|435849759|ref|YP_007301700.1| - 0.0057 16.5 0.5 2.1 8.2 0.0 2.5 2 0 0 2 2 2 2 PDZ-like domain DUF1699 PF08004.6 gi|435849760|ref|YP_007301701.1| - 6.4e-58 193.9 0.2 7.2e-58 193.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_7 PF02796.10 gi|435849760|ref|YP_007301701.1| - 0.018 14.8 0.0 0.041 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase OrfB_IS605 PF01385.14 gi|435849761|ref|YP_007301702.1| - 2.9e-38 131.5 7.5 6e-37 127.2 5.2 2.1 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849761|ref|YP_007301702.1| - 3.2e-21 74.7 0.4 6.5e-21 73.7 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849761|ref|YP_007301702.1| - 1.6e-13 49.7 0.1 3.8e-13 48.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain zf-piccolo PF05715.8 gi|435849761|ref|YP_007301702.1| - 0.025 14.5 0.3 0.059 13.3 0.2 1.5 1 0 0 1 1 1 0 Piccolo Zn-finger Rubredoxin PF00301.15 gi|435849761|ref|YP_007301702.1| - 6.2 6.7 6.6 63 3.5 4.6 2.2 1 1 0 1 1 1 0 Rubredoxin DUF3006 PF11213.3 gi|435849762|ref|YP_007301703.1| - 9.7e-19 66.8 0.5 1.1e-18 66.7 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) HemN_C PF06969.11 gi|435849763|ref|YP_007301704.1| - 0.15 12.1 0.1 0.35 10.9 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain Myb_DNA-bind_4 PF13837.1 gi|435849764|ref|YP_007301705.1| - 0.0038 17.3 0.4 1.2 9.3 0.0 3.0 2 0 0 2 2 2 2 Myb/SANT-like DNA-binding domain PAP_fibrillin PF04755.7 gi|435849764|ref|YP_007301705.1| - 0.032 13.9 3.6 0.37 10.4 0.3 2.5 2 1 0 2 2 2 0 PAP_fibrillin HHH_6 PF14579.1 gi|435849764|ref|YP_007301705.1| - 0.11 12.6 0.6 0.82 9.7 0.0 2.7 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF1700 PF08006.6 gi|435849765|ref|YP_007301706.1| - 0.2 10.9 2.1 0.25 10.6 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) ABC_tran PF00005.22 gi|435849767|ref|YP_007301708.1| - 5.1e-27 94.8 0.0 1.2e-26 93.6 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|435849767|ref|YP_007301708.1| - 3.3e-17 63.3 0.0 3.8e-15 56.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|435849767|ref|YP_007301708.1| - 0.00051 20.4 0.1 0.00082 19.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|435849767|ref|YP_007301708.1| - 0.0018 18.4 1.4 0.019 15.1 0.4 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|435849767|ref|YP_007301708.1| - 0.0043 16.5 0.3 0.013 15.0 0.2 1.8 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|435849767|ref|YP_007301708.1| - 0.0067 15.9 0.2 0.084 12.2 0.1 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|435849767|ref|YP_007301708.1| - 0.026 13.5 0.0 0.17 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|435849767|ref|YP_007301708.1| - 0.029 14.0 0.2 0.1 12.2 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|435849767|ref|YP_007301708.1| - 0.052 12.9 0.1 0.094 12.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|435849767|ref|YP_007301708.1| - 0.11 12.0 0.1 0.3 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|435849767|ref|YP_007301708.1| - 0.14 12.2 0.2 0.53 10.4 0.2 2.1 1 1 0 1 1 1 0 AAA domain NPCBM_assoc PF10633.4 gi|435849768|ref|YP_007301709.1| - 8.2e-12 45.0 0.6 0.0002 21.3 0.0 4.4 4 1 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|435849768|ref|YP_007301709.1| - 1.3e-06 28.3 8.7 0.021 14.8 0.1 3.4 3 0 0 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.6 gi|435849768|ref|YP_007301709.1| - 6.9e-05 22.8 0.5 6.9e-05 22.8 0.3 2.9 3 1 0 3 3 3 1 CARDB FixG_C PF11614.3 gi|435849768|ref|YP_007301709.1| - 0.00014 21.9 2.3 0.033 14.2 0.1 3.5 2 1 2 4 4 4 1 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF1034 PF06280.7 gi|435849768|ref|YP_007301709.1| - 0.0034 17.7 2.0 1.4 9.3 0.9 3.1 1 1 0 1 1 1 1 Fn3-like domain (DUF1034) AP3B1_C PF14796.1 gi|435849768|ref|YP_007301709.1| - 0.0049 16.5 0.0 0.014 15.0 0.0 1.7 2 0 0 2 2 2 1 Clathrin-adaptor complex-3 beta-1 subunit C-terminal A2M_N PF01835.14 gi|435849768|ref|YP_007301709.1| - 0.017 15.3 0.4 1.5 9.1 0.0 3.1 3 2 0 3 3 3 0 MG2 domain GH97_C PF14509.1 gi|435849768|ref|YP_007301709.1| - 0.074 13.1 0.1 0.27 11.3 0.1 1.9 1 0 0 1 1 1 0 Glycosyl-hydrolase 97 C-terminal, oligomerisation Transglut_C PF00927.17 gi|435849768|ref|YP_007301709.1| - 0.13 12.2 0.2 0.68 9.9 0.0 2.3 2 1 1 3 3 3 0 Transglutaminase family, C-terminal ig like domain DUF440 PF04269.7 gi|435849768|ref|YP_007301709.1| - 0.23 11.5 1.0 8.1 6.5 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function, DUF440 DUF3871 PF12987.2 gi|435849769|ref|YP_007301710.1| - 0.11 11.2 0.1 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3871) Sigma_reg_N PF13800.1 gi|435849769|ref|YP_007301710.1| - 0.14 12.1 1.1 0.23 11.4 0.8 1.5 1 1 0 1 1 1 0 Sigma factor regulator N-terminal ABC2_membrane_2 PF12679.2 gi|435849770|ref|YP_007301711.1| - 8e-30 103.6 27.8 1e-29 103.2 19.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435849770|ref|YP_007301711.1| - 5.8e-11 41.9 44.1 2.7e-10 39.8 30.3 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|435849770|ref|YP_007301711.1| - 5.3e-07 28.9 36.0 5.3e-07 28.9 25.0 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|435849770|ref|YP_007301711.1| - 0.69 9.1 42.2 0.41 9.9 23.1 3.0 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|435849770|ref|YP_007301711.1| - 1.3 8.1 37.5 0.073 12.2 17.4 2.7 2 1 0 2 2 2 0 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|435849771|ref|YP_007301712.1| - 2.5e-33 115.1 18.8 3.2e-33 114.8 13.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435849771|ref|YP_007301712.1| - 1.7e-15 56.8 34.2 2.2e-14 53.1 24.0 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|435849771|ref|YP_007301712.1| - 1.3e-05 24.3 27.8 2.1e-05 23.7 18.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|435849771|ref|YP_007301712.1| - 0.18 11.0 32.0 0.078 12.2 17.3 2.8 2 1 0 2 2 2 0 ABC-2 family transporter protein PD40 PF07676.7 gi|435849773|ref|YP_007301714.1| - 2.3e-10 39.8 2.8 0.38 10.4 0.1 6.6 6 1 0 6 6 6 3 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|435849773|ref|YP_007301714.1| - 0.0046 15.5 1.9 0.31 9.5 0.0 4.0 2 1 3 5 5 5 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.1 gi|435849773|ref|YP_007301714.1| - 0.013 13.9 0.2 0.58 8.5 0.0 3.4 2 1 1 3 3 3 0 Oligogalacturonate lyase T4-Gluco-transf PF09198.5 gi|435849773|ref|YP_007301714.1| - 0.064 12.5 0.1 1.3 8.3 0.0 2.7 2 0 0 2 2 2 0 Bacteriophage T4 beta-glucosyltransferase PD40 PF07676.7 gi|435849774|ref|YP_007301715.1| - 0.00028 20.4 5.8 0.59 9.8 0.0 4.3 5 0 0 5 5 5 2 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|435849774|ref|YP_007301715.1| - 0.014 14.0 11.4 1.1 7.8 0.0 5.9 4 2 2 6 6 6 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Glyco_hydro_114 PF03537.8 gi|435849774|ref|YP_007301715.1| - 0.081 12.7 0.3 0.4 10.4 0.1 2.2 2 0 0 2 2 2 0 Glycoside-hydrolase family GH114 ABC2_membrane_2 PF12679.2 gi|435849775|ref|YP_007301716.1| - 3.2e-31 108.2 19.6 4.9e-31 107.6 13.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435849775|ref|YP_007301716.1| - 7.9e-11 41.5 31.1 7.9e-11 41.5 21.5 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|435849775|ref|YP_007301716.1| - 3.1e-10 39.6 26.7 3.1e-10 39.6 18.5 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|435849775|ref|YP_007301716.1| - 0.00022 20.5 21.9 0.00022 20.5 15.2 2.9 2 1 1 3 3 3 1 ABC-2 family transporter protein DUF2921 PF11145.3 gi|435849775|ref|YP_007301716.1| - 0.065 10.9 0.3 0.09 10.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2921) ABC2_membrane_2 PF12679.2 gi|435849776|ref|YP_007301717.1| - 3.2e-31 108.2 20.5 6.1e-31 107.3 14.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435849776|ref|YP_007301717.1| - 2.2e-14 53.2 29.7 2.2e-14 53.2 20.6 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|435849776|ref|YP_007301717.1| - 6e-05 22.2 36.7 0.00023 20.3 24.7 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|435849776|ref|YP_007301717.1| - 0.0028 16.8 26.8 0.0028 16.8 18.6 2.4 2 1 0 2 2 2 1 ABC-2 type transporter DUF3290 PF11694.3 gi|435849776|ref|YP_007301717.1| - 0.17 11.5 0.2 0.17 11.5 0.1 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF3290) ABC2_membrane_5 PF13346.1 gi|435849776|ref|YP_007301717.1| - 0.57 9.4 39.3 0.59 9.3 20.8 3.1 2 1 1 3 3 3 0 ABC-2 family transporter protein PPC PF04151.10 gi|435849777|ref|YP_007301718.1| - 5.8e-05 23.9 0.4 5.8e-05 23.9 0.3 1.8 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain DUF1295 PF06966.7 gi|435849780|ref|YP_007301721.1| - 0.076 12.3 2.4 3.7 6.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1295) DUF4203 PF13886.1 gi|435849780|ref|YP_007301721.1| - 0.12 11.8 5.8 0.035 13.5 1.2 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4203) FUSC_2 PF13515.1 gi|435849780|ref|YP_007301721.1| - 0.47 10.3 6.0 0.44 10.4 3.4 1.5 1 1 0 1 1 1 0 Fusaric acid resistance protein-like Peptidase_M50 PF02163.17 gi|435849780|ref|YP_007301721.1| - 0.67 8.8 2.9 3 6.7 2.0 2.1 1 1 0 1 1 1 0 Peptidase family M50 DUF95 PF01944.12 gi|435849781|ref|YP_007301722.1| - 1.8e-27 96.0 14.0 2.1e-27 95.8 9.7 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF2207 PF09972.4 gi|435849781|ref|YP_007301722.1| - 0.66 8.5 3.5 1.2 7.6 2.4 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4341 PF14241.1 gi|435849781|ref|YP_007301722.1| - 1.7 8.4 6.7 0.38 10.4 0.7 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4341) DoxX PF07681.7 gi|435849782|ref|YP_007301723.1| - 0.12 12.7 4.6 0.18 12.2 3.2 1.2 1 0 0 1 1 1 0 DoxX DoxX PF07681.7 gi|435849783|ref|YP_007301724.1| - 0.13 12.6 4.0 0.18 12.2 2.7 1.3 1 0 0 1 1 1 0 DoxX DUF1495 PF07381.6 gi|435849784|ref|YP_007301725.1| - 3.2e-26 90.7 0.2 3.7e-26 90.5 0.1 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Yip1 PF04893.12 gi|435849785|ref|YP_007301726.1| - 5.1e-27 94.4 14.4 6.4e-27 94.1 10.0 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|435849785|ref|YP_007301726.1| - 0.0016 18.1 17.6 0.0045 16.6 12.1 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) Baculo_11_kDa PF06143.6 gi|435849785|ref|YP_007301726.1| - 4.7 6.6 6.0 0.91 8.9 0.0 2.5 3 0 0 3 3 3 0 Baculovirus 11 kDa family DDE_Tnp_IS1 PF03400.8 gi|435849786|ref|YP_007301727.1| - 5.2e-14 52.4 0.2 9.2e-14 51.6 0.1 1.4 1 0 0 1 1 1 1 IS1 transposase Terminase_5 PF06056.7 gi|435849786|ref|YP_007301727.1| - 9.6e-08 31.4 0.0 2.2e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.1 gi|435849786|ref|YP_007301727.1| - 3.8e-07 29.5 0.0 1.1e-06 28.0 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|435849786|ref|YP_007301727.1| - 1.7e-06 27.8 0.0 3.6e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|435849786|ref|YP_007301727.1| - 0.0009 19.3 0.0 0.002 18.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|435849786|ref|YP_007301727.1| - 0.00096 18.5 0.1 0.0026 17.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|435849786|ref|YP_007301727.1| - 0.0032 16.9 0.0 0.0083 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.8 gi|435849786|ref|YP_007301727.1| - 0.0041 16.5 7.1 0.0073 15.7 4.9 1.5 1 0 0 1 1 1 1 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|435849786|ref|YP_007301727.1| - 0.0057 16.4 5.6 0.0057 16.4 3.9 1.7 2 0 0 2 2 2 1 Transposase zinc-ribbon domain HTH_Tnp_1 PF01527.15 gi|435849786|ref|YP_007301727.1| - 0.0059 16.5 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Transposase Cullin_binding PF03556.10 gi|435849786|ref|YP_007301727.1| - 0.011 15.8 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Cullin binding DDE_Tnp_4 PF13359.1 gi|435849786|ref|YP_007301727.1| - 0.012 15.1 0.1 0.053 13.1 0.0 1.9 1 1 0 1 1 1 0 DDE superfamily endonuclease GerE PF00196.14 gi|435849786|ref|YP_007301727.1| - 0.072 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF2387 PF09526.5 gi|435849786|ref|YP_007301727.1| - 0.097 12.6 0.4 0.23 11.4 0.3 1.6 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-Mss51 PF13824.1 gi|435849786|ref|YP_007301727.1| - 0.11 12.3 1.7 0.31 10.9 1.2 1.8 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Mu-like_Com PF10122.4 gi|435849786|ref|YP_007301727.1| - 0.13 11.3 2.2 0.22 10.6 1.5 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com OrfB_Zn_ribbon PF07282.6 gi|435849786|ref|YP_007301727.1| - 0.26 10.9 2.4 0.9 9.2 1.7 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|435849786|ref|YP_007301727.1| - 0.9 9.4 4.3 1.3 8.9 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|435849786|ref|YP_007301727.1| - 1.2 9.1 4.1 4.9 7.2 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain EssA PF10661.4 gi|435849787|ref|YP_007301728.1| - 0.16 11.6 0.7 0.42 10.2 0.1 2.0 2 0 0 2 2 2 0 WXG100 protein secretion system (Wss), protein EssA ABC_tran PF00005.22 gi|435849788|ref|YP_007301729.1| - 5.1e-35 120.7 0.0 6.6e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435849788|ref|YP_007301729.1| - 4.9e-15 56.2 0.0 6.5e-13 49.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|435849788|ref|YP_007301729.1| - 2.4e-09 36.7 0.5 2.8e-08 33.2 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|435849788|ref|YP_007301729.1| - 1.3e-07 31.0 0.2 0.00095 18.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|435849788|ref|YP_007301729.1| - 2.7e-05 23.6 0.1 5.1e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|435849788|ref|YP_007301729.1| - 5.5e-05 23.3 0.5 0.0029 17.7 0.3 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|435849788|ref|YP_007301729.1| - 0.00013 21.2 0.0 0.00022 20.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|435849788|ref|YP_007301729.1| - 0.00044 18.8 0.0 0.045 12.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|435849788|ref|YP_007301729.1| - 0.00049 20.1 0.3 0.0018 18.2 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|435849788|ref|YP_007301729.1| - 0.001 19.4 1.9 0.0018 18.6 1.3 1.4 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|435849788|ref|YP_007301729.1| - 0.0011 18.7 0.0 0.013 15.1 0.0 2.2 2 1 0 2 2 2 1 Archaeal ATPase AAA_10 PF12846.2 gi|435849788|ref|YP_007301729.1| - 0.002 17.6 0.4 0.0043 16.5 0.1 1.5 1 1 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|435849788|ref|YP_007301729.1| - 0.0031 17.3 0.0 0.0065 16.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|435849788|ref|YP_007301729.1| - 0.0038 16.6 0.0 0.056 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|435849788|ref|YP_007301729.1| - 0.0045 16.8 0.0 0.0072 16.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|435849788|ref|YP_007301729.1| - 0.0063 16.8 1.1 0.13 12.5 0.8 2.3 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|435849788|ref|YP_007301729.1| - 0.0081 16.0 0.0 0.076 12.9 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|435849788|ref|YP_007301729.1| - 0.0093 16.7 0.1 0.019 15.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|435849788|ref|YP_007301729.1| - 0.011 15.2 0.3 0.22 10.9 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|435849788|ref|YP_007301729.1| - 0.014 15.0 0.1 4.6 6.9 0.0 2.2 2 0 0 2 2 2 0 NTPase NACHT PF05729.7 gi|435849788|ref|YP_007301729.1| - 0.014 15.0 0.2 0.17 11.5 0.0 2.1 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|435849788|ref|YP_007301729.1| - 0.02 14.8 0.5 0.048 13.6 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|435849788|ref|YP_007301729.1| - 0.021 13.7 0.5 0.048 12.5 0.0 1.8 2 1 0 2 2 2 0 Type II/IV secretion system protein MobB PF03205.9 gi|435849788|ref|YP_007301729.1| - 0.033 13.8 0.5 0.42 10.3 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|435849788|ref|YP_007301729.1| - 0.037 13.7 0.1 0.64 9.8 0.0 2.4 2 1 0 2 2 2 0 Part of AAA domain AAA_24 PF13479.1 gi|435849788|ref|YP_007301729.1| - 0.052 13.1 0.0 0.56 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|435849788|ref|YP_007301729.1| - 0.086 12.4 0.0 0.54 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|435849788|ref|YP_007301729.1| - 0.1 11.0 0.2 0.25 9.7 0.1 1.5 1 1 0 1 1 1 0 RNA12 protein Miro PF08477.8 gi|435849788|ref|YP_007301729.1| - 0.12 12.9 0.0 0.33 11.4 0.0 1.9 1 1 0 1 1 1 0 Miro-like protein MacB_PCD PF12704.2 gi|435849789|ref|YP_007301730.1| - 3.2e-37 128.3 0.5 3.2e-37 128.3 0.3 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|435849789|ref|YP_007301730.1| - 1.9e-23 82.5 16.7 8.2e-23 80.4 9.1 2.3 2 0 0 2 2 2 1 FtsX-like permease family YjgP_YjgQ PF03739.9 gi|435849789|ref|YP_007301730.1| - 0.28 9.8 7.1 0.062 12.0 2.3 1.8 1 1 0 1 1 1 0 Predicted permease YjgP/YjgQ family Tetraspannin PF00335.15 gi|435849789|ref|YP_007301730.1| - 2.3 7.4 17.8 1.1 8.5 5.2 3.0 3 0 0 3 3 3 0 Tetraspanin family HTH_5 PF01022.15 gi|435849790|ref|YP_007301731.1| - 1.2e-05 24.9 0.0 0.063 12.9 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|435849790|ref|YP_007301731.1| - 0.00014 21.5 0.3 0.023 14.3 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|435849790|ref|YP_007301731.1| - 0.00048 19.4 1.4 0.012 14.9 0.0 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|435849790|ref|YP_007301731.1| - 0.0034 17.0 0.4 0.7 9.6 0.0 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.4 gi|435849790|ref|YP_007301731.1| - 0.046 13.7 2.3 1.1 9.4 0.2 2.8 2 1 1 3 3 3 0 Hypothetical protein (DUF2513) HTH_34 PF13601.1 gi|435849790|ref|YP_007301731.1| - 0.059 13.4 0.2 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain zinc_ribbon_2 PF13240.1 gi|435849790|ref|YP_007301731.1| - 0.06 12.8 1.3 11 5.5 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain HTH_12 PF08461.5 gi|435849790|ref|YP_007301731.1| - 0.072 12.8 1.9 0.5 10.1 0.1 2.5 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|435849790|ref|YP_007301731.1| - 0.1 12.4 1.8 7 6.5 0.1 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix LIM PF00412.17 gi|435849790|ref|YP_007301731.1| - 0.44 10.6 3.2 3.5 7.7 0.0 3.2 3 0 0 3 3 3 0 LIM domain Radical_SAM PF04055.16 gi|435849792|ref|YP_007301733.1| - 2.1e-14 54.0 0.4 4.5e-14 52.9 0.3 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|435849792|ref|YP_007301733.1| - 5.7e-08 32.8 0.2 3.9e-07 30.1 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|435849792|ref|YP_007301733.1| - 6.1e-08 32.8 2.0 1.2e-07 31.9 0.3 2.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain CBM_3 PF00942.13 gi|435849792|ref|YP_007301733.1| - 0.099 12.6 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Cellulose binding domain SEC-C PF02810.10 gi|435849793|ref|YP_007301734.1| - 1.8e-05 24.1 7.8 4e-05 23.0 5.4 1.6 1 0 0 1 1 1 1 SEC-C motif PuR_N PF09182.5 gi|435849793|ref|YP_007301734.1| - 0.04 13.5 0.0 0.1 12.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal DUF1699 PF08004.6 gi|435849794|ref|YP_007301735.1| - 7e-58 193.8 0.4 7.9e-58 193.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) AAA_14 PF13173.1 gi|435849795|ref|YP_007301736.1| - 5.1e-35 120.1 0.9 5.1e-35 120.1 0.6 2.5 2 1 1 3 3 3 1 AAA domain DUF4143 PF13635.1 gi|435849795|ref|YP_007301736.1| - 2.9e-13 49.8 0.4 5.2e-13 48.9 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|435849795|ref|YP_007301736.1| - 7.3e-09 35.6 7.2 0.00014 21.6 0.0 3.0 2 2 1 3 3 3 2 Archaeal ATPase AAA_22 PF13401.1 gi|435849795|ref|YP_007301736.1| - 6.6e-06 26.2 0.0 0.00024 21.2 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|435849795|ref|YP_007301736.1| - 0.00018 20.9 0.0 0.00032 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|435849795|ref|YP_007301736.1| - 0.0031 17.5 0.0 0.048 13.6 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.17 gi|435849795|ref|YP_007301736.1| - 0.029 14.5 0.0 0.13 12.4 0.0 2.1 2 1 0 2 2 2 0 RNA helicase AAA PF00004.24 gi|435849795|ref|YP_007301736.1| - 0.05 13.8 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|435849795|ref|YP_007301736.1| - 0.097 11.5 0.2 0.8 8.5 0.0 2.3 2 1 0 3 3 3 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|435849795|ref|YP_007301736.1| - 0.1 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family HTH_23 PF13384.1 gi|435849796|ref|YP_007301737.1| - 2.8e-06 26.7 0.0 5.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|435849796|ref|YP_007301737.1| - 6.4e-06 25.6 0.0 1.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|435849796|ref|YP_007301737.1| - 1.9e-05 24.5 0.0 3.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|435849796|ref|YP_007301737.1| - 0.00076 18.9 0.1 0.002 17.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|435849796|ref|YP_007301737.1| - 0.0018 18.1 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_29 PF13551.1 gi|435849796|ref|YP_007301737.1| - 0.0031 17.6 0.0 0.0057 16.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|435849796|ref|YP_007301737.1| - 0.0061 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 DUF2387 PF09526.5 gi|435849796|ref|YP_007301737.1| - 0.0091 15.9 1.0 0.016 15.1 0.7 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1 PF03811.8 gi|435849796|ref|YP_007301737.1| - 0.021 14.3 9.0 0.042 13.3 6.3 1.5 1 0 0 1 1 1 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|435849796|ref|YP_007301737.1| - 0.029 14.1 7.8 0.047 13.5 5.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF1670 PF07900.6 gi|435849796|ref|YP_007301737.1| - 0.089 11.9 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) zf-Mss51 PF13824.1 gi|435849796|ref|YP_007301737.1| - 0.12 12.2 2.2 0.21 11.4 1.5 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 GcrA PF07750.6 gi|435849797|ref|YP_007301738.1| - 0.00033 20.8 0.0 0.18 11.9 0.0 2.2 2 0 0 2 2 2 2 GcrA cell cycle regulator HTH_38 PF13936.1 gi|435849797|ref|YP_007301738.1| - 0.00064 19.2 0.4 0.84 9.2 0.0 3.1 3 0 0 3 3 3 2 Helix-turn-helix domain DUF285 PF03382.9 gi|435849797|ref|YP_007301738.1| - 0.015 14.8 0.0 1.9 8.0 0.0 2.2 2 0 0 2 2 2 0 Mycoplasma protein of unknown function, DUF285 TrmB PF01978.14 gi|435849797|ref|YP_007301738.1| - 0.11 12.2 0.1 2 8.1 0.0 2.5 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.10 gi|435849797|ref|YP_007301738.1| - 0.11 11.9 0.3 26 4.3 0.0 3.0 3 0 0 3 3 3 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DDE_Tnp_1_6 PF13751.1 gi|435849797|ref|YP_007301738.1| - 0.13 12.2 0.7 0.24 11.4 0.5 1.5 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|435849798|ref|YP_007301739.1| - 8.1e-05 22.2 0.4 0.00012 21.7 0.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF3931 PF13082.1 gi|435849798|ref|YP_007301739.1| - 0.092 12.6 0.3 0.53 10.1 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3931) Exo5 PF09810.4 gi|435849799|ref|YP_007301740.1| - 0.11 11.6 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Exonuclease V - a 5' deoxyribonuclease zf-H2C2_5 PF13909.1 gi|435849799|ref|YP_007301740.1| - 0.12 12.7 1.6 0.23 11.7 1.1 1.5 1 0 0 1 1 1 0 C2H2-type zinc-finger domain DDE_Tnp_IS1 PF03400.8 gi|435849800|ref|YP_007301741.1| - 1.9e-14 53.8 0.2 3.6e-14 52.9 0.1 1.4 1 0 0 1 1 1 1 IS1 transposase Terminase_5 PF06056.7 gi|435849800|ref|YP_007301741.1| - 9.5e-08 31.4 0.0 2.2e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.1 gi|435849800|ref|YP_007301741.1| - 3.8e-07 29.5 0.0 1.1e-06 28.0 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|435849800|ref|YP_007301741.1| - 1.7e-06 27.8 0.0 3.6e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|435849800|ref|YP_007301741.1| - 0.00088 19.3 0.0 0.0019 18.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|435849800|ref|YP_007301741.1| - 0.00095 18.5 0.1 0.0026 17.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|435849800|ref|YP_007301741.1| - 0.0032 16.9 0.0 0.0083 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.8 gi|435849800|ref|YP_007301741.1| - 0.004 16.6 7.1 0.0073 15.7 4.9 1.5 1 0 0 1 1 1 1 InsA N-terminal domain HTH_Tnp_1 PF01527.15 gi|435849800|ref|YP_007301741.1| - 0.005 16.7 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Transposase Zn_Tnp_IS1595 PF12760.2 gi|435849800|ref|YP_007301741.1| - 0.0057 16.4 5.6 0.0057 16.4 3.9 1.7 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DDE_Tnp_4 PF13359.1 gi|435849800|ref|YP_007301741.1| - 0.01 15.4 0.1 0.047 13.2 0.0 2.0 1 1 0 1 1 1 0 DDE superfamily endonuclease GerE PF00196.14 gi|435849800|ref|YP_007301741.1| - 0.071 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF2387 PF09526.5 gi|435849800|ref|YP_007301741.1| - 0.084 12.8 0.5 0.2 11.5 0.3 1.6 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Cullin_binding PF03556.10 gi|435849800|ref|YP_007301741.1| - 0.096 12.8 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Cullin binding zf-Mss51 PF13824.1 gi|435849800|ref|YP_007301741.1| - 0.11 12.3 1.8 0.33 10.8 1.2 1.8 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Mu-like_Com PF10122.4 gi|435849800|ref|YP_007301741.1| - 0.13 11.3 2.2 0.22 10.6 1.5 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com Elf1 PF05129.8 gi|435849800|ref|YP_007301741.1| - 0.23 11.1 1.8 0.39 10.4 0.4 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|435849800|ref|YP_007301741.1| - 0.27 10.9 2.5 0.84 9.3 1.7 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|435849800|ref|YP_007301741.1| - 1.3 9.0 4.1 4.9 7.1 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|435849800|ref|YP_007301741.1| - 2 8.3 5.0 1.8 8.5 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin Exo5 PF09810.4 gi|435849801|ref|YP_007301742.1| - 0.019 14.1 0.1 0.051 12.7 0.0 1.6 1 1 1 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease HSDR_N PF04313.9 gi|435849801|ref|YP_007301742.1| - 0.032 13.9 0.1 0.079 12.7 0.0 1.6 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_1 PF12705.2 gi|435849801|ref|YP_007301742.1| - 0.085 12.2 0.0 0.15 11.4 0.0 1.4 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF4143 PF13635.1 gi|435849802|ref|YP_007301743.1| - 0.089 12.9 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) DrsE PF02635.10 gi|435849803|ref|YP_007301744.1| - 0.028 14.4 0.0 0.035 14.1 0.0 1.1 1 0 0 1 1 1 0 DsrE/DsrF-like family SNF2_N PF00176.18 gi|435849804|ref|YP_007301745.1| - 2.1e-16 59.5 0.1 7.9e-14 51.1 0.0 3.1 2 2 1 3 3 3 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|435849804|ref|YP_007301745.1| - 1.9e-10 40.4 0.0 5.2e-10 39.0 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|435849804|ref|YP_007301745.1| - 7.9e-06 25.8 0.0 0.0031 17.3 0.0 3.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|435849804|ref|YP_007301745.1| - 0.00011 21.7 0.0 0.017 14.6 0.0 3.1 2 1 0 2 2 2 1 DEAD/DEAH box helicase DUF4391 PF14335.1 gi|435849805|ref|YP_007301746.1| - 9.9e-60 201.6 0.0 1.8e-59 200.8 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4391) DUF3883 PF13020.1 gi|435849806|ref|YP_007301747.1| - 0.061 13.0 2.9 0.19 11.4 1.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3883) N6_N4_Mtase PF01555.13 gi|435849807|ref|YP_007301748.1| - 9.1e-38 130.0 2.1 1.4e-37 129.4 1.5 1.3 1 0 0 1 1 1 1 DNA methylase Cons_hypoth95 PF03602.10 gi|435849807|ref|YP_007301748.1| - 0.079 12.3 0.9 0.24 10.7 0.0 2.2 3 0 0 3 3 3 0 Conserved hypothetical protein 95 ResIII PF04851.10 gi|435849808|ref|YP_007301749.1| - 3.3e-15 56.4 0.1 1.3e-14 54.4 0.1 2.1 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|435849808|ref|YP_007301749.1| - 3.8e-05 23.2 0.0 0.00011 21.7 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase PhoH PF02562.11 gi|435849808|ref|YP_007301749.1| - 0.026 13.7 0.7 0.11 11.7 0.0 2.3 3 0 0 3 3 3 0 PhoH-like protein Mrr_cat PF04471.7 gi|435849809|ref|YP_007301750.1| - 2e-06 27.5 1.0 1.1e-05 25.1 0.1 2.5 2 0 0 2 2 2 1 Restriction endonuclease HSDR_N_2 PF13588.1 gi|435849809|ref|YP_007301750.1| - 0.00041 20.1 0.0 0.0015 18.3 0.0 1.9 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) CENP-N PF05238.8 gi|435849809|ref|YP_007301750.1| - 0.0015 17.6 1.6 0.0027 16.8 1.1 1.4 1 0 0 1 1 1 1 Kinetochore protein CHL4 like Cauli_AT PF03233.8 gi|435849809|ref|YP_007301750.1| - 0.11 12.2 15.0 2.5 7.7 0.2 3.4 3 0 0 3 3 3 0 Aphid transmission protein AHH PF14412.1 gi|435849809|ref|YP_007301750.1| - 0.23 11.4 0.1 0.23 11.4 0.1 2.5 3 0 0 3 3 3 0 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH DUF972 PF06156.8 gi|435849809|ref|YP_007301750.1| - 0.3 11.4 11.4 0.57 10.5 0.2 3.7 3 1 0 3 3 3 0 Protein of unknown function (DUF972) Laminin_II PF06009.7 gi|435849809|ref|YP_007301750.1| - 2.9 7.6 11.0 1.8 8.3 1.6 3.1 3 0 0 3 3 3 0 Laminin Domain II Fzo_mitofusin PF04799.8 gi|435849809|ref|YP_007301750.1| - 5.3 6.3 10.7 0.35 10.2 0.2 2.8 3 0 0 3 3 3 0 fzo-like conserved region DUF2346 PF09803.4 gi|435849809|ref|YP_007301750.1| - 6 6.7 7.3 2.2 8.1 1.8 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2346) Plasmid_stabil PF05016.9 gi|435849811|ref|YP_007301752.1| - 9.5e-12 45.1 0.0 1.1e-11 44.9 0.0 1.0 1 0 0 1 1 1 1 Plasmid stabilisation system protein HATPase_c PF02518.21 gi|435849813|ref|YP_007301754.1| - 6.8e-05 22.5 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HNH_2 PF13391.1 gi|435849813|ref|YP_007301754.1| - 0.057 13.2 0.4 0.6 9.9 0.1 2.7 2 0 0 2 2 2 0 HNH endonuclease SNF2_N PF00176.18 gi|435849814|ref|YP_007301755.1| - 5.1e-22 78.0 0.1 8.5e-22 77.3 0.1 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|435849814|ref|YP_007301755.1| - 6e-19 67.6 0.1 2e-17 62.8 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|435849814|ref|YP_007301755.1| - 4.1e-08 33.2 0.0 2.7e-07 30.6 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|435849814|ref|YP_007301755.1| - 2.2e-06 27.2 0.0 7.5e-06 25.5 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_34 PF13872.1 gi|435849814|ref|YP_007301755.1| - 0.0035 16.1 0.0 0.0059 15.4 0.0 1.2 1 0 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 AAA_22 PF13401.1 gi|435849814|ref|YP_007301755.1| - 0.013 15.6 0.0 0.08 13.0 0.1 2.4 2 1 0 2 2 2 0 AAA domain Phage_Mu_Gam PF07352.7 gi|435849814|ref|YP_007301755.1| - 0.27 10.7 11.5 0.053 13.0 2.7 2.5 2 0 0 2 2 2 0 Bacteriophage Mu Gam like protein DUF3373 PF11853.3 gi|435849815|ref|YP_007301756.1| - 0.33 9.4 6.0 0.46 8.9 4.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) DUF310 PF03750.8 gi|435849815|ref|YP_007301756.1| - 0.37 11.0 10.4 0.12 12.6 4.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF310) Cupin_8 PF13621.1 gi|435849815|ref|YP_007301756.1| - 0.78 9.1 6.3 1.3 8.4 4.4 1.5 1 1 0 1 1 1 0 Cupin-like domain BCL_N PF04714.8 gi|435849815|ref|YP_007301756.1| - 2.7 7.6 8.4 3.5 7.2 0.3 2.7 2 0 0 2 2 2 0 BCL7, N-terminal conserver region SlyX PF04102.7 gi|435849815|ref|YP_007301756.1| - 2.7 8.4 10.9 0.5 10.7 4.0 2.6 3 1 0 3 3 3 0 SlyX NAD_binding_1 PF00175.16 gi|435849815|ref|YP_007301756.1| - 3.1 8.4 8.3 0.39 11.3 0.3 2.5 1 1 1 2 2 2 0 Oxidoreductase NAD-binding domain Cob_adeno_trans PF01923.13 gi|435849815|ref|YP_007301756.1| - 3.5 7.3 10.3 1.1 8.9 2.7 2.3 1 1 2 3 3 3 0 Cobalamin adenosyltransferase DUF3287 PF11690.3 gi|435849815|ref|YP_007301756.1| - 8.5 6.4 13.1 0.63 10.1 0.6 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF3287) UvrD-helicase PF00580.16 gi|435849816|ref|YP_007301757.1| - 3.8e-60 203.8 0.7 3.8e-60 203.8 0.5 3.2 3 1 0 3 3 3 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|435849816|ref|YP_007301757.1| - 1.5e-54 185.8 4.0 1.5e-54 185.8 2.8 1.7 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|435849816|ref|YP_007301757.1| - 1.2e-42 146.1 0.0 2.3e-42 145.1 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|435849816|ref|YP_007301757.1| - 1.7e-12 46.9 0.0 1.7e-11 43.6 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|435849816|ref|YP_007301757.1| - 8.3e-12 45.1 0.2 6.2e-11 42.3 0.1 2.4 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_12 PF13087.1 gi|435849816|ref|YP_007301757.1| - 5.1e-06 26.0 0.1 0.0024 17.2 0.0 3.4 2 1 1 3 3 3 1 AAA domain Viral_helicase1 PF01443.13 gi|435849816|ref|YP_007301757.1| - 1.2e-05 25.0 0.3 0.27 10.7 0.0 3.9 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|435849816|ref|YP_007301757.1| - 0.05 13.1 0.0 0.16 11.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain TPR_11 PF13414.1 gi|435849817|ref|YP_007301758.1| - 3.8e-48 160.9 8.0 3.4e-10 39.4 0.0 5.1 4 1 1 5 5 5 5 TPR repeat TPR_1 PF00515.23 gi|435849817|ref|YP_007301758.1| - 7e-47 155.1 8.1 7.4e-07 28.5 0.0 8.2 8 0 0 8 8 8 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|435849817|ref|YP_007301758.1| - 4.5e-46 151.0 6.4 1.3e-05 24.7 0.0 8.2 8 0 0 8 8 8 8 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435849817|ref|YP_007301758.1| - 1.6e-30 102.7 1.0 0.00016 21.6 0.0 9.0 8 1 1 9 9 9 6 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435849817|ref|YP_007301758.1| - 1.9e-28 96.0 10.7 0.0026 17.4 0.0 8.5 7 1 2 9 9 9 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435849817|ref|YP_007301758.1| - 1.8e-25 89.0 0.0 9e-05 23.0 0.0 5.1 3 2 3 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|435849817|ref|YP_007301758.1| - 8.3e-24 83.3 9.1 3.6e-06 26.8 0.2 5.8 1 1 6 7 7 7 7 Tetratricopeptide repeat Apc3 PF12895.2 gi|435849817|ref|YP_007301758.1| - 7.9e-23 80.4 3.6 8.9e-07 28.9 0.4 4.3 3 1 1 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|435849817|ref|YP_007301758.1| - 2.4e-22 77.3 0.0 0.012 16.1 0.0 8.1 1 1 7 8 8 8 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|435849817|ref|YP_007301758.1| - 3e-18 65.4 0.0 0.00052 19.8 0.0 5.9 3 2 2 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435849817|ref|YP_007301758.1| - 1.7e-17 63.5 0.1 0.00025 21.2 0.0 5.2 1 1 7 8 8 8 8 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435849817|ref|YP_007301758.1| - 6e-14 50.6 0.4 0.49 10.3 0.0 7.1 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|435849817|ref|YP_007301758.1| - 1.3e-09 37.8 3.3 3.7 8.2 0.0 7.0 8 0 0 8 8 6 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|435849817|ref|YP_007301758.1| - 2.3e-09 36.9 4.6 0.059 13.2 0.0 6.4 6 1 1 7 7 7 2 Fis1 C-terminal tetratricopeptide repeat TOM20_plant PF06552.7 gi|435849817|ref|YP_007301758.1| - 2.3e-05 24.0 0.1 0.54 9.8 0.0 3.6 3 1 1 4 4 4 2 Plant specific mitochondrial import receptor subunit TOM20 NARP1 PF12569.3 gi|435849817|ref|YP_007301758.1| - 4.6e-05 22.3 1.2 0.027 13.2 0.0 3.4 1 1 3 4 4 4 2 NMDA receptor-regulated protein 1 Paf67 PF10255.4 gi|435849817|ref|YP_007301758.1| - 5.9e-05 22.1 0.0 0.03 13.1 0.0 3.3 2 1 2 4 4 4 1 RNA polymerase I-associated factor PAF67 TPR_10 PF13374.1 gi|435849817|ref|YP_007301758.1| - 7e-05 22.6 0.6 6.6 6.8 0.0 5.8 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_3 PF07720.7 gi|435849817|ref|YP_007301758.1| - 0.00019 21.1 4.1 4.2 7.2 0.0 4.6 5 0 0 5 5 4 1 Tetratricopeptide repeat DUF3808 PF10300.4 gi|435849817|ref|YP_007301758.1| - 0.00047 18.8 4.8 0.004 15.7 0.2 2.1 1 1 0 2 2 2 1 Protein of unknown function (DUF3808) TPR_20 PF14561.1 gi|435849817|ref|YP_007301758.1| - 0.0007 19.6 0.3 19 5.4 0.0 4.7 2 2 4 6 6 6 0 Tetratricopeptide repeat PPR PF01535.15 gi|435849817|ref|YP_007301758.1| - 0.0054 16.6 6.8 43 4.3 0.0 6.3 8 0 0 8 8 6 0 PPR repeat TPR_4 PF07721.9 gi|435849817|ref|YP_007301758.1| - 0.1 13.0 0.3 55 4.6 0.0 3.6 3 1 1 4 4 2 0 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|435849817|ref|YP_007301758.1| - 0.11 11.7 1.1 35 3.4 0.0 3.9 2 2 1 4 4 4 0 Coatomer epsilon subunit DUF3856 PF12968.2 gi|435849817|ref|YP_007301758.1| - 0.15 11.9 2.3 4.3 7.1 0.0 4.1 4 2 2 6 6 6 0 Domain of Unknown Function (DUF3856) CSD PF00313.17 gi|435849818|ref|YP_007301759.1| - 0.0028 17.4 0.1 0.009 15.7 0.0 2.0 2 0 0 2 2 2 1 'Cold-shock' DNA-binding domain UvrD-helicase PF00580.16 gi|435849818|ref|YP_007301759.1| - 0.16 11.2 7.6 0.11 11.8 3.8 1.6 1 1 1 2 2 2 0 UvrD/REP helicase N-terminal domain DUF1887 PF09002.6 gi|435849819|ref|YP_007301760.1| - 5.7e-06 24.9 0.0 7.6e-06 24.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) TrmB PF01978.14 gi|435849819|ref|YP_007301760.1| - 1.5e-05 24.5 0.0 4.2e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|435849819|ref|YP_007301760.1| - 2.3e-05 23.9 0.0 5.3e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|435849819|ref|YP_007301760.1| - 0.00014 21.1 0.0 0.00026 20.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Cas_Cas02710 PF09670.5 gi|435849819|ref|YP_007301760.1| - 0.00016 20.4 0.1 0.00021 20.0 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_APE2256 PF09651.5 gi|435849819|ref|YP_007301760.1| - 0.00035 20.2 0.0 0.00061 19.5 0.0 1.5 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) HTH_20 PF12840.2 gi|435849819|ref|YP_007301760.1| - 0.0012 18.5 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|435849819|ref|YP_007301760.1| - 0.0039 16.9 0.1 0.0071 16.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|435849819|ref|YP_007301760.1| - 0.0067 16.4 0.1 0.029 14.3 0.1 2.1 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|435849819|ref|YP_007301760.1| - 0.018 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|435849819|ref|YP_007301760.1| - 0.019 15.0 0.0 0.043 13.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_CodY PF08222.6 gi|435849819|ref|YP_007301760.1| - 0.033 13.5 0.0 0.062 12.6 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain Cas_NE0113 PF09623.5 gi|435849819|ref|YP_007301760.1| - 0.043 13.2 0.1 0.17 11.3 0.0 1.8 1 1 1 2 2 2 0 CRISPR-associated protein NE0113 (Cas_NE0113) HrcA_DNA-bdg PF03444.10 gi|435849819|ref|YP_007301760.1| - 0.1 12.0 0.1 0.27 10.7 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Glucosamine_iso PF01182.15 gi|435849819|ref|YP_007301760.1| - 0.1 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MarR PF01047.17 gi|435849819|ref|YP_007301760.1| - 0.13 11.9 0.3 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 MarR family Disaggr_repeat PF06848.6 gi|435849820|ref|YP_007301761.1| - 3.8e-155 512.0 12.9 2.8e-79 264.7 2.0 2.3 2 0 0 2 2 2 2 Disaggregatase related repeat TGFb_propeptide PF00688.13 gi|435849820|ref|YP_007301761.1| - 2.6e-12 46.5 0.0 0.044 13.0 0.0 4.1 4 0 0 4 4 4 4 TGF-beta propeptide PKD PF00801.15 gi|435849820|ref|YP_007301761.1| - 2.5e-10 39.9 7.9 2.5e-10 39.9 5.5 3.0 4 0 0 4 4 4 1 PKD domain Glyco_hydro_39 PF01229.12 gi|435849820|ref|YP_007301761.1| - 1e-07 30.7 0.4 1.7e-07 30.0 0.3 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 39 Glyco_hydro_53 PF07745.8 gi|435849820|ref|YP_007301761.1| - 8.3e-06 24.8 0.9 4.4e-05 22.4 0.6 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 53 Glyco_hydro_10 PF00331.15 gi|435849820|ref|YP_007301761.1| - 0.012 14.7 0.6 0.33 9.9 0.0 2.2 2 0 0 2 2 2 0 Glycosyl hydrolase family 10 Cellulase-like PF12876.2 gi|435849820|ref|YP_007301761.1| - 0.015 15.7 0.0 0.3 11.5 0.0 2.7 2 0 0 2 2 2 0 Sugar-binding cellulase-like UPF0122 PF04297.9 gi|435849823|ref|YP_007301764.1| - 0.69 9.9 11.7 0.22 11.5 5.2 2.1 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like FGE-sulfatase PF03781.11 gi|435849824|ref|YP_007301765.1| - 8e-45 153.2 5.7 1.9e-44 151.9 3.9 1.7 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 FYVE PF01363.16 gi|435849824|ref|YP_007301765.1| - 0.0047 16.7 10.2 0.015 15.1 7.1 1.9 1 0 0 1 1 1 1 FYVE zinc finger Prok-RING_1 PF14446.1 gi|435849824|ref|YP_007301765.1| - 0.37 10.5 10.1 0.13 12.0 4.9 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C3HC4_2 PF13923.1 gi|435849824|ref|YP_007301765.1| - 0.76 9.8 8.3 2.5 8.1 5.8 2.0 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.14 gi|435849824|ref|YP_007301765.1| - 3 7.5 9.4 9.7 5.9 5.0 2.5 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-B_box PF00643.19 gi|435849824|ref|YP_007301765.1| - 4.9 7.1 11.4 4.1 7.3 5.2 2.4 2 0 0 2 2 2 0 B-box zinc finger Disaggr_repeat PF06848.6 gi|435849825|ref|YP_007301766.1| - 1.1e-230 758.2 25.0 4.5e-78 260.8 2.2 3.7 3 0 0 3 3 3 3 Disaggregatase related repeat LVIVD PF08309.6 gi|435849825|ref|YP_007301766.1| - 1.5e-136 443.1 139.1 4.1e-15 54.4 2.2 15.1 14 0 0 14 14 14 14 LVIVD repeat PKD PF00801.15 gi|435849825|ref|YP_007301766.1| - 1.3e-41 140.1 56.9 1.8e-11 43.6 4.2 6.5 5 0 0 5 5 5 4 PKD domain TGFb_propeptide PF00688.13 gi|435849825|ref|YP_007301766.1| - 9.9e-14 51.2 0.0 0.22 10.7 0.0 6.2 6 0 0 6 6 6 5 TGF-beta propeptide Y_Y_Y PF07495.8 gi|435849825|ref|YP_007301766.1| - 5.6e-07 29.2 12.3 0.32 10.7 0.2 5.4 5 0 0 5 5 5 3 Y_Y_Y domain DUF4625 PF15418.1 gi|435849825|ref|YP_007301766.1| - 2.1e-05 24.6 9.4 7.4 6.7 0.1 5.6 4 3 1 5 5 5 3 Domain of unknown function (DUF4625) DUF4398 PF14346.1 gi|435849825|ref|YP_007301766.1| - 0.017 15.1 7.2 1.1 9.3 1.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) Gmad2 PF10648.4 gi|435849825|ref|YP_007301766.1| - 0.03 14.4 19.3 3.2 7.9 0.3 6.0 4 2 0 4 4 4 0 Immunoglobulin-like domain of bacterial spore germination He_PIG PF05345.7 gi|435849825|ref|YP_007301766.1| - 0.17 11.9 54.2 0.88 9.6 1.6 8.5 7 0 0 7 7 7 0 Putative Ig domain LVIVD PF08309.6 gi|435849826|ref|YP_007301767.1| - 7.8e-13 47.1 1.9 9.6e-09 34.1 0.1 2.4 2 0 0 2 2 2 2 LVIVD repeat Disaggr_repeat PF06848.6 gi|435849827|ref|YP_007301768.1| - 6.6e-154 508.0 14.3 1.6e-77 259.0 2.6 2.4 2 0 0 2 2 2 2 Disaggregatase related repeat PKD PF00801.15 gi|435849827|ref|YP_007301768.1| - 4.1e-12 45.6 5.9 4.1e-12 45.6 4.1 2.6 3 0 0 3 3 3 1 PKD domain TGFb_propeptide PF00688.13 gi|435849827|ref|YP_007301768.1| - 3.8e-07 29.6 0.0 1 8.6 0.0 4.1 4 0 0 4 4 4 2 TGF-beta propeptide DERM PF14704.1 gi|435849827|ref|YP_007301768.1| - 0.00013 21.9 5.3 0.045 13.7 0.3 3.8 2 1 1 3 3 3 3 Dermatopontin Calsarcin PF05556.6 gi|435849827|ref|YP_007301768.1| - 0.12 11.6 0.0 24 4.0 0.0 2.8 3 0 0 3 3 3 0 Calcineurin-binding protein (Calsarcin) Inhibitor_I42 PF09394.5 gi|435849827|ref|YP_007301768.1| - 1.6 9.1 20.1 1.4 9.3 0.1 6.7 5 2 2 8 8 8 0 Chagasin family peptidase inhibitor I42 Y1_Tnp PF01797.11 gi|435849828|ref|YP_007301769.1| - 1e-40 138.3 0.4 1.2e-40 138.1 0.3 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.14 gi|435849829|ref|YP_007301770.1| - 3.6e-42 144.2 3.5 4.8e-42 143.8 2.4 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849829|ref|YP_007301770.1| - 2.1e-25 88.1 0.2 5.3e-25 86.8 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849829|ref|YP_007301770.1| - 3.6e-16 58.2 1.0 8e-16 57.0 0.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|435849829|ref|YP_007301770.1| - 0.0039 16.9 0.4 0.011 15.5 0.3 1.8 1 0 0 1 1 1 1 Double zinc ribbon FYVE PF01363.16 gi|435849829|ref|YP_007301770.1| - 0.013 15.3 1.3 0.02 14.7 0.2 1.9 2 0 0 2 2 2 0 FYVE zinc finger zf-NADH-PPase PF09297.6 gi|435849829|ref|YP_007301770.1| - 0.023 14.1 0.5 0.048 13.1 0.4 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|435849829|ref|YP_007301770.1| - 0.031 13.4 0.9 1.4 8.1 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain DUF3781 PF12636.2 gi|435849829|ref|YP_007301770.1| - 0.071 13.0 0.2 0.35 10.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3781) TF_Zn_Ribbon PF08271.7 gi|435849829|ref|YP_007301770.1| - 0.091 12.0 1.4 0.55 9.5 0.1 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|435849829|ref|YP_007301770.1| - 0.095 12.4 2.4 0.51 10.0 1.7 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|435849829|ref|YP_007301770.1| - 0.26 10.8 1.7 1.3 8.6 1.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF164 PF02591.10 gi|435849829|ref|YP_007301770.1| - 0.48 10.2 2.6 1.8 8.4 1.8 2.0 1 1 0 1 1 1 0 Putative zinc ribbon domain DUF1610 PF07754.6 gi|435849829|ref|YP_007301770.1| - 1.2 9.2 5.5 1.7 8.8 0.2 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF772 PF05598.6 gi|435849830|ref|YP_007301771.1| - 2.9e-18 65.5 0.0 6.3e-18 64.4 0.0 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|435849830|ref|YP_007301771.1| - 1.1e-13 51.2 0.5 3.8e-12 46.1 0.4 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|435849830|ref|YP_007301771.1| - 1.2e-05 25.0 0.1 2.6e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|435849830|ref|YP_007301771.1| - 0.00041 19.9 0.1 0.00069 19.2 0.1 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.1 gi|435849830|ref|YP_007301771.1| - 0.0061 16.5 0.1 0.013 15.4 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain FGE-sulfatase PF03781.11 gi|435849831|ref|YP_007301772.1| - 1.1e-54 185.5 8.4 8.1e-54 182.7 5.8 2.0 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 DUF4246 PF14033.1 gi|435849832|ref|YP_007301773.1| - 0.031 12.8 0.1 0.033 12.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4246) Trehalose_PPase PF02358.11 gi|435849832|ref|YP_007301773.1| - 0.039 12.8 0.0 0.044 12.6 0.0 1.1 1 0 0 1 1 1 0 Trehalose-phosphatase Arch_ATPase PF01637.13 gi|435849833|ref|YP_007301774.1| - 4.7e-05 23.1 0.0 7e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|435849833|ref|YP_007301774.1| - 0.001 18.9 0.0 0.0024 17.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|435849833|ref|YP_007301774.1| - 0.001 18.1 0.0 0.075 12.1 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_14 PF13173.1 gi|435849833|ref|YP_007301774.1| - 0.0024 17.7 0.0 0.0057 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|435849833|ref|YP_007301774.1| - 0.01 15.8 3.7 0.016 15.1 2.1 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|435849833|ref|YP_007301774.1| - 0.012 15.9 0.0 0.017 15.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_13 PF13166.1 gi|435849833|ref|YP_007301774.1| - 0.013 14.0 0.0 0.015 13.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|435849833|ref|YP_007301774.1| - 0.017 14.6 0.0 0.036 13.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|435849833|ref|YP_007301774.1| - 0.021 15.3 0.0 0.035 14.5 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_18 PF13238.1 gi|435849833|ref|YP_007301774.1| - 0.028 14.7 0.3 0.073 13.3 0.1 1.8 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|435849833|ref|YP_007301774.1| - 0.03 13.8 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.1 gi|435849833|ref|YP_007301774.1| - 0.035 14.4 0.0 0.067 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|435849833|ref|YP_007301774.1| - 0.035 14.2 0.0 0.063 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|435849833|ref|YP_007301774.1| - 0.037 13.4 0.0 0.06 12.7 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|435849833|ref|YP_007301774.1| - 0.085 13.6 0.0 0.14 12.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|435849833|ref|YP_007301774.1| - 0.088 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|435849833|ref|YP_007301774.1| - 0.14 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|435849833|ref|YP_007301774.1| - 0.14 11.3 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|435849833|ref|YP_007301774.1| - 0.15 11.6 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Arf PF00025.16 gi|435849833|ref|YP_007301774.1| - 0.16 11.2 0.0 0.31 10.2 0.0 1.5 1 0 0 1 1 1 0 ADP-ribosylation factor family LVIVD PF08309.6 gi|435849834|ref|YP_007301775.1| - 7.3e-37 124.0 35.3 3e-11 42.0 0.5 8.0 7 0 0 7 7 7 7 LVIVD repeat LGFP PF08310.6 gi|435849834|ref|YP_007301775.1| - 2.1e-20 72.0 11.1 1.3e-06 27.9 0.0 7.6 7 1 0 7 7 7 6 LGFP repeat Spore_YtfJ PF09579.5 gi|435849834|ref|YP_007301775.1| - 0.015 15.1 3.0 0.051 13.4 2.1 2.0 1 0 0 1 1 1 0 Sporulation protein YtfJ (Spore_YtfJ) PQQ_3 PF13570.1 gi|435849834|ref|YP_007301775.1| - 0.1 12.8 7.6 2.4 8.5 0.1 4.5 4 0 0 4 4 4 0 PQQ-like domain DUF3945 PF13101.1 gi|435849834|ref|YP_007301775.1| - 0.13 11.5 0.1 0.38 10.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) TPR_11 PF13414.1 gi|435849835|ref|YP_007301776.1| - 5.5e-37 125.2 7.8 3.1e-18 65.1 0.6 3.9 2 1 2 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|435849835|ref|YP_007301776.1| - 5.8e-35 117.4 2.8 1.3e-09 37.2 0.0 5.3 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435849835|ref|YP_007301776.1| - 6.2e-29 97.7 2.9 2.2e-09 36.7 0.0 4.8 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|435849835|ref|YP_007301776.1| - 2.5e-27 92.5 6.4 2e-08 33.5 0.0 5.8 5 1 1 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435849835|ref|YP_007301776.1| - 1.6e-21 76.3 0.0 1.9e-07 31.5 0.1 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|435849835|ref|YP_007301776.1| - 4.8e-19 68.0 1.3 1.4e-08 34.5 0.0 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435849835|ref|YP_007301776.1| - 5.5e-19 66.4 7.1 4.5e-06 26.0 0.0 5.5 5 1 0 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435849835|ref|YP_007301776.1| - 4e-18 65.5 0.3 9.1e-09 35.5 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435849835|ref|YP_007301776.1| - 8.5e-18 63.2 0.0 8.4e-05 22.8 0.0 4.4 1 1 4 5 5 5 4 Tetratricopeptide repeat PPTA PF01239.17 gi|435849835|ref|YP_007301776.1| - 3.1e-11 42.0 0.0 0.0069 15.6 0.0 3.6 3 0 0 3 3 3 3 Protein prenyltransferase alpha subunit repeat TPR_6 PF13174.1 gi|435849835|ref|YP_007301776.1| - 1.4e-10 40.9 0.0 0.00012 22.2 0.0 4.9 5 0 0 5 5 5 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|435849835|ref|YP_007301776.1| - 5.8e-10 39.1 0.0 0.00048 20.1 0.0 2.4 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|435849835|ref|YP_007301776.1| - 1e-08 34.8 0.0 0.0079 16.0 0.0 2.8 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435849835|ref|YP_007301776.1| - 1.3e-08 33.9 0.8 0.1 12.4 0.0 4.9 5 0 0 5 5 5 1 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|435849835|ref|YP_007301776.1| - 3e-06 27.4 0.1 0.093 12.9 0.0 2.4 1 1 1 2 2 2 2 Alkyl sulfatase dimerisation NARP1 PF12569.3 gi|435849835|ref|YP_007301776.1| - 7.2e-06 25.0 0.3 0.0038 16.0 0.0 2.4 1 1 2 3 3 3 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|435849835|ref|YP_007301776.1| - 8.2e-06 25.6 0.0 0.21 11.5 0.0 3.0 2 1 0 2 2 2 2 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|435849835|ref|YP_007301776.1| - 0.0021 17.9 0.1 2.4 8.1 0.0 3.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|435849835|ref|YP_007301776.1| - 0.0021 18.2 0.0 1.8 9.2 0.0 2.9 3 0 0 3 3 2 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|435849835|ref|YP_007301776.1| - 0.0033 17.2 0.1 1.2 9.0 0.0 3.1 2 1 1 3 3 3 1 Anaphase-promoting complex subunit 5 RPN7 PF10602.4 gi|435849835|ref|YP_007301776.1| - 0.0082 15.5 0.6 0.051 12.9 0.1 2.4 2 2 1 3 3 3 1 26S proteasome subunit RPN7 FAT PF02259.18 gi|435849835|ref|YP_007301776.1| - 0.0086 15.0 1.4 0.2 10.6 1.0 2.6 1 1 0 1 1 1 1 FAT domain TPR_15 PF13429.1 gi|435849835|ref|YP_007301776.1| - 0.0089 15.1 0.2 4 6.4 0.0 2.5 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|435849835|ref|YP_007301776.1| - 0.018 15.1 0.1 1.3 9.1 0.0 2.7 2 1 1 3 3 3 0 Tetratricopeptide repeat BTAD PF03704.12 gi|435849835|ref|YP_007301776.1| - 0.024 14.9 0.0 0.86 9.8 0.0 2.5 1 1 2 3 3 3 0 Bacterial transcriptional activator domain TOM20_plant PF06552.7 gi|435849835|ref|YP_007301776.1| - 0.027 14.0 1.9 0.35 10.4 0.1 2.9 1 1 2 3 3 3 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_21 PF09976.4 gi|435849835|ref|YP_007301776.1| - 0.036 14.0 0.7 2.9 7.8 0.0 3.0 2 1 0 2 2 2 0 Tetratricopeptide repeat ChAPs PF09295.5 gi|435849835|ref|YP_007301776.1| - 0.081 11.6 0.2 0.56 8.9 0.0 1.9 2 0 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) DUF357 PF04010.8 gi|435849835|ref|YP_007301776.1| - 0.1 12.2 1.3 0.22 11.2 0.1 2.1 2 1 1 3 3 2 0 Protein of unknown function (DUF357) Oxidored_q5_N PF01059.12 gi|435849836|ref|YP_007301777.1| - 0.036 13.9 4.4 0.06 13.2 3.1 1.4 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus CDC48_N PF02359.13 gi|435849836|ref|YP_007301777.1| - 0.044 13.7 0.0 30 4.6 0.0 3.2 3 0 0 3 3 3 0 Cell division protein 48 (CDC48), N-terminal domain AAA_15 PF13175.1 gi|435849837|ref|YP_007301778.1| - 1.4e-23 83.6 33.3 1.4e-23 83.6 23.1 3.5 2 2 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|435849837|ref|YP_007301778.1| - 1.4e-16 61.3 29.1 8.2e-13 48.9 7.6 4.0 1 1 2 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|435849837|ref|YP_007301778.1| - 1.4e-12 48.3 9.5 1.4e-12 48.3 6.6 3.0 2 1 0 3 3 3 1 AAA domain DUF2813 PF11398.3 gi|435849837|ref|YP_007301778.1| - 1.8e-10 40.4 1.7 1.2e-07 31.1 0.1 2.8 3 0 0 3 3 3 2 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|435849837|ref|YP_007301778.1| - 4.1e-10 39.2 4.9 7.6e-10 38.3 0.1 2.8 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|435849837|ref|YP_007301778.1| - 0.00014 21.3 0.0 0.00053 19.4 0.0 2.0 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|435849837|ref|YP_007301778.1| - 0.06 13.2 0.1 0.6 10.0 0.0 2.7 3 0 0 3 3 3 0 50S ribosome-binding GTPase HEAT_2 PF13646.1 gi|435849838|ref|YP_007301779.1| - 3.2e-14 52.9 0.1 6.2e-05 23.1 0.0 5.3 5 1 0 5 5 5 3 HEAT repeats HEAT PF02985.17 gi|435849838|ref|YP_007301779.1| - 9.3e-05 22.1 0.4 23 5.4 0.0 6.8 7 0 0 7 7 7 1 HEAT repeat HEAT_EZ PF13513.1 gi|435849838|ref|YP_007301779.1| - 0.0017 18.7 0.0 12 6.4 0.0 4.8 3 2 2 5 5 5 1 HEAT-like repeat MCPsignal PF00015.16 gi|435849838|ref|YP_007301779.1| - 1.3 8.5 8.2 0.82 9.1 3.4 2.2 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|435849838|ref|YP_007301779.1| - 1.5 8.7 11.2 1.4 8.8 3.8 3.3 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) ComZ PF10815.3 gi|435849839|ref|YP_007301780.1| - 0.07 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 ComZ RVT_1 PF00078.22 gi|435849840|ref|YP_007301781.1| - 1.7e-44 151.7 0.1 3.3e-44 150.8 0.1 1.5 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_N PF13655.1 gi|435849840|ref|YP_007301781.1| - 3e-31 107.3 7.7 7.3e-31 106.0 5.3 1.7 1 0 0 1 1 1 1 N-terminal domain of reverse transcriptase GIIM PF08388.6 gi|435849840|ref|YP_007301781.1| - 1.5e-23 82.3 5.6 5.9e-23 80.4 3.9 2.1 1 0 0 1 1 1 1 Group II intron, maturase-specific domain U5_2-snRNA_bdg PF10597.4 gi|435849840|ref|YP_007301781.1| - 0.012 15.2 0.1 0.031 13.8 0.1 1.7 1 0 0 1 1 1 0 U5-snRNA binding site 2 of PrP8 Poxvirus_B22R_N PF13169.1 gi|435849841|ref|YP_007301782.1| - 0.027 14.6 0.0 0.03 14.5 0.0 1.1 1 0 0 1 1 1 0 Poxvirus B22R protein N-terminal Disaggr_repeat PF06848.6 gi|435849842|ref|YP_007301783.1| - 5.8e-230 755.8 23.5 2.9e-77 258.2 1.8 3.5 3 0 0 3 3 3 3 Disaggregatase related repeat PKD PF00801.15 gi|435849842|ref|YP_007301783.1| - 3.4e-70 231.7 65.2 3e-17 62.1 5.6 8.0 7 0 0 7 7 7 6 PKD domain NHL PF01436.16 gi|435849842|ref|YP_007301783.1| - 3.5e-18 64.5 16.9 1e-06 28.3 0.1 6.2 5 0 0 5 5 5 4 NHL repeat TGFb_propeptide PF00688.13 gi|435849842|ref|YP_007301783.1| - 3.6e-13 49.3 0.0 1 8.5 0.0 6.3 6 0 0 6 6 6 5 TGF-beta propeptide Abhydrolase_6 PF12697.2 gi|435849842|ref|YP_007301783.1| - 5e-10 39.6 0.0 8.7e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|435849842|ref|YP_007301783.1| - 1.5e-09 37.7 0.0 3.9e-09 36.4 0.0 1.8 1 0 0 1 1 1 1 Alpha/beta hydrolase family SBBP PF06739.6 gi|435849842|ref|YP_007301783.1| - 4.8e-09 35.8 32.5 0.049 13.4 0.4 8.1 7 0 0 7 7 7 5 Beta-propeller repeat DUF4625 PF15418.1 gi|435849842|ref|YP_007301783.1| - 2.1e-05 24.6 6.0 5.2 7.1 0.0 5.6 5 1 0 5 5 5 2 Domain of unknown function (DUF4625) Y_Y_Y PF07495.8 gi|435849842|ref|YP_007301783.1| - 0.0021 17.7 17.0 1 9.1 0.9 6.2 6 0 0 6 6 6 2 Y_Y_Y domain Big_3_4 PF13754.1 gi|435849842|ref|YP_007301783.1| - 0.013 15.8 0.7 0.013 15.8 0.5 11.3 10 3 2 12 12 11 0 Bacterial Ig-like domain (group 3) DUF676 PF05057.9 gi|435849842|ref|YP_007301783.1| - 0.059 12.6 0.2 0.23 10.7 0.1 1.8 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Hydrolase_4 PF12146.3 gi|435849842|ref|YP_007301783.1| - 0.059 13.2 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Putative lysophospholipase SoxZ PF08770.6 gi|435849842|ref|YP_007301783.1| - 0.067 12.6 5.8 3.7 7.0 0.0 4.9 5 0 0 5 5 5 0 Sulphur oxidation protein SoxZ He_PIG PF05345.7 gi|435849842|ref|YP_007301783.1| - 0.95 9.5 45.9 0.34 10.9 0.6 8.2 7 0 0 7 7 6 0 Putative Ig domain Gmad2 PF10648.4 gi|435849842|ref|YP_007301783.1| - 6.5 7.0 18.3 5.4 7.2 0.4 4.5 5 0 0 5 5 3 0 Immunoglobulin-like domain of bacterial spore germination DUF262 PF03235.9 gi|435849843|ref|YP_007301784.1| - 8.1e-40 137.1 9.4 8.1e-40 137.1 6.5 2.7 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|435849843|ref|YP_007301784.1| - 1.1e-22 80.3 0.1 1.1e-22 80.3 0.1 2.6 4 0 0 4 4 4 1 Protein of unknown function (DUF1524) HTH_24 PF13412.1 gi|435849844|ref|YP_007301785.1| - 2.6e-21 74.7 0.4 1.2e-10 40.6 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|435849844|ref|YP_007301785.1| - 1.2e-15 57.0 0.0 5.9e-07 29.2 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|435849844|ref|YP_007301785.1| - 1.1e-12 47.3 0.0 2.7e-05 23.7 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|435849844|ref|YP_007301785.1| - 5.5e-12 45.1 0.0 1.3e-06 27.9 0.0 2.5 3 0 0 3 3 2 2 MarR family HTH_11 PF08279.7 gi|435849844|ref|YP_007301785.1| - 9.7e-12 44.3 0.2 8.2e-06 25.3 0.0 2.3 2 0 0 2 2 2 2 HTH domain HTH_34 PF13601.1 gi|435849844|ref|YP_007301785.1| - 4.6e-08 32.9 0.0 0.011 15.7 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR PF01047.17 gi|435849844|ref|YP_007301785.1| - 6.4e-08 32.1 0.0 2.3e-05 24.0 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|435849844|ref|YP_007301785.1| - 8.9e-08 31.6 0.0 4.9e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|435849844|ref|YP_007301785.1| - 2.8e-06 27.1 0.0 6.8e-06 25.9 0.0 1.7 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|435849844|ref|YP_007301785.1| - 3.8e-06 26.5 0.0 0.00079 19.0 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|435849844|ref|YP_007301785.1| - 4.6e-06 26.1 0.0 0.00035 20.1 0.0 2.7 2 1 0 2 2 2 1 Homeodomain-like domain GerE PF00196.14 gi|435849844|ref|YP_007301785.1| - 5.1e-06 25.7 0.1 0.00029 20.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_Mga PF08280.6 gi|435849844|ref|YP_007301785.1| - 1.2e-05 24.9 0.0 0.00037 20.1 0.0 2.3 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_40 PF14493.1 gi|435849844|ref|YP_007301785.1| - 1.4e-05 25.2 0.0 0.002 18.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|435849844|ref|YP_007301785.1| - 2.4e-05 24.3 0.4 0.0037 17.3 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|435849844|ref|YP_007301785.1| - 0.00024 21.0 0.1 0.0079 16.1 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|435849844|ref|YP_007301785.1| - 0.001 18.5 0.0 0.0051 16.3 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|435849844|ref|YP_007301785.1| - 0.0015 17.9 0.2 0.025 14.0 0.0 2.5 2 1 1 3 3 3 1 Sigma-70, region 4 TFIIE_alpha PF02002.12 gi|435849844|ref|YP_007301785.1| - 0.0027 17.2 0.1 0.73 9.3 0.0 2.2 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_38 PF13936.1 gi|435849844|ref|YP_007301785.1| - 0.0044 16.5 0.1 0.018 14.6 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|435849844|ref|YP_007301785.1| - 0.0056 16.4 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|435849844|ref|YP_007301785.1| - 0.0065 16.4 0.0 4.5 7.4 0.0 2.3 2 0 0 2 2 2 1 Transposase HTH_10 PF04967.7 gi|435849844|ref|YP_007301785.1| - 0.017 14.7 0.0 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain RPA_C PF08784.6 gi|435849844|ref|YP_007301785.1| - 0.021 15.2 0.0 5 7.6 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal HTH_29 PF13551.1 gi|435849844|ref|YP_007301785.1| - 0.022 14.8 0.0 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix Penicillinase_R PF03965.11 gi|435849844|ref|YP_007301785.1| - 0.028 14.4 0.0 0.32 11.1 0.0 2.2 2 0 0 2 2 2 0 Penicillinase repressor Sigma70_r4 PF04545.11 gi|435849844|ref|YP_007301785.1| - 0.031 13.6 0.0 0.16 11.2 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_41 PF14502.1 gi|435849844|ref|YP_007301785.1| - 0.031 13.8 0.0 3 7.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain RP-C PF03428.8 gi|435849844|ref|YP_007301785.1| - 0.1 12.0 0.0 0.97 8.8 0.0 2.0 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_3 PF01381.17 gi|435849844|ref|YP_007301785.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix EAP30 PF04157.11 gi|435849844|ref|YP_007301785.1| - 0.13 11.3 0.0 7.6 5.6 0.0 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family DDRGK PF09756.4 gi|435849844|ref|YP_007301785.1| - 0.17 11.3 0.5 0.7 9.2 0.4 1.7 2 0 0 2 2 2 0 DDRGK domain PsbQ PF05757.6 gi|435849844|ref|YP_007301785.1| - 0.17 11.2 0.1 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) Zn_dep_PLPC PF00882.13 gi|435849847|ref|YP_007301788.1| - 2.6e-07 30.4 0.4 2.6e-07 30.4 0.3 1.6 2 0 0 2 2 2 1 Zinc dependent phospholipase C DUF692 PF05114.8 gi|435849848|ref|YP_007301789.1| - 0.0037 16.2 0.0 0.0059 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF692) tRNA_anti-codon PF01336.20 gi|435849849|ref|YP_007301790.1| - 3.5e-21 74.8 12.1 1.8e-06 27.6 0.2 4.1 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|435849849|ref|YP_007301790.1| - 0.0062 16.2 1.0 11 5.7 0.0 3.6 2 1 1 3 3 3 2 Replication factor-A C terminal domain DDE_Tnp_ISL3 PF01610.12 gi|435849850|ref|YP_007301791.1| - 3.1e-66 223.4 7.7 4.4e-66 223.0 5.4 1.2 1 0 0 1 1 1 1 Transposase zf-ISL3 PF14690.1 gi|435849850|ref|YP_007301791.1| - 1.5e-14 53.7 2.5 3.1e-14 52.7 1.8 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Tnp_ISL3 PF13542.1 gi|435849850|ref|YP_007301791.1| - 5.2e-12 44.7 0.1 1e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.1 gi|435849850|ref|YP_007301791.1| - 0.0012 18.3 0.2 0.0062 16.1 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain z-alpha PF02295.12 gi|435849850|ref|YP_007301791.1| - 0.2 11.4 1.4 1.1 9.0 0.0 2.6 3 0 0 3 3 3 0 Adenosine deaminase z-alpha domain Tcp10_C PF07202.8 gi|435849851|ref|YP_007301792.1| - 0.064 12.8 0.4 0.094 12.2 0.3 1.2 1 0 0 1 1 1 0 T-complex protein 10 C-terminus HSP20 PF00011.16 gi|435849851|ref|YP_007301792.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Hsp20/alpha crystallin family OrfB_Zn_ribbon PF07282.6 gi|435849852|ref|YP_007301793.1| - 1.9e-23 81.8 0.9 4.8e-23 80.5 0.6 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|435849852|ref|YP_007301793.1| - 1.1e-15 57.6 0.5 1.7e-15 57.0 0.3 1.4 1 1 0 1 1 1 1 Probable transposase HSP20 PF00011.16 gi|435849855|ref|YP_007301796.1| - 8.6e-05 22.3 0.1 0.002 17.9 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|435849855|ref|YP_007301796.1| - 0.0019 18.7 0.2 0.0038 17.7 0.1 1.5 1 0 0 1 1 1 1 CS domain DUF1610 PF07754.6 gi|435849856|ref|YP_007301797.1| - 0.02 14.9 0.3 0.042 13.9 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Oest_recep PF02159.10 gi|435849856|ref|YP_007301797.1| - 0.04 14.0 0.0 0.062 13.4 0.0 1.2 1 0 0 1 1 1 0 Oestrogen receptor UPF0547 PF10571.4 gi|435849856|ref|YP_007301797.1| - 0.057 13.1 0.3 0.17 11.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HD PF01966.17 gi|435849857|ref|YP_007301798.1| - 7.7e-05 22.6 0.0 0.00013 21.9 0.0 1.4 1 1 0 1 1 1 1 HD domain Ins_beta PF03488.9 gi|435849860|ref|YP_007301801.1| - 0.094 12.5 0.4 0.094 12.5 0.3 2.5 2 1 0 2 2 2 0 Nematode insulin-related peptide beta type COPR5 PF15340.1 gi|435849860|ref|YP_007301801.1| - 0.18 12.1 0.6 0.21 11.9 0.4 1.1 1 0 0 1 1 1 0 Cooperator of PRMT5 family FIVAR PF07554.8 gi|435849862|ref|YP_007301803.1| - 3.8e-11 42.9 43.1 9.5e-06 25.7 3.0 5.9 5 1 0 5 5 5 3 Uncharacterised Sugar-binding Domain fn3 PF00041.16 gi|435849862|ref|YP_007301803.1| - 0.00097 19.2 13.5 0.11 12.5 0.5 3.9 2 1 0 2 2 2 2 Fibronectin type III domain CAMP_factor PF07373.6 gi|435849862|ref|YP_007301803.1| - 0.007 15.8 13.8 0.1 12.0 0.5 3.5 1 1 1 3 3 3 3 CAMP factor (Cfa) DUF4398 PF14346.1 gi|435849862|ref|YP_007301803.1| - 1.2 9.2 4.6 20 5.3 0.1 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4398) DUF3021 PF11457.3 gi|435849863|ref|YP_007301804.1| - 0.0049 16.7 0.5 0.0055 16.5 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3021) 7tm_7 PF08395.7 gi|435849863|ref|YP_007301804.1| - 0.016 14.2 0.2 0.018 14.0 0.1 1.0 1 0 0 1 1 1 0 7tm Chemosensory receptor FtsX PF02687.16 gi|435849863|ref|YP_007301804.1| - 0.16 11.7 3.9 0.2 11.4 2.7 1.0 1 0 0 1 1 1 0 FtsX-like permease family Tetraspannin PF00335.15 gi|435849863|ref|YP_007301804.1| - 0.2 10.9 4.0 0.24 10.6 2.7 1.0 1 0 0 1 1 1 0 Tetraspanin family TF_Zn_Ribbon PF08271.7 gi|435849864|ref|YP_007301805.1| - 0.0007 18.8 3.9 0.077 12.3 0.1 2.7 3 0 0 3 3 2 2 TFIIB zinc-binding Sgf11 PF08209.6 gi|435849864|ref|YP_007301805.1| - 0.0029 16.8 2.3 0.078 12.3 0.1 2.3 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|435849864|ref|YP_007301805.1| - 0.0069 16.3 1.1 0.56 10.2 0.0 2.5 2 0 0 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|435849864|ref|YP_007301805.1| - 0.0072 15.4 0.4 0.3 10.3 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|435849864|ref|YP_007301805.1| - 0.036 13.8 2.9 0.099 12.4 2.0 1.8 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|435849864|ref|YP_007301805.1| - 0.06 13.1 0.5 10 5.9 0.1 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|435849864|ref|YP_007301805.1| - 0.061 13.1 0.5 5.1 6.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbons NOB1_Zn_bind PF08772.6 gi|435849864|ref|YP_007301805.1| - 0.074 12.8 0.8 4.1 7.2 0.2 2.2 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|435849864|ref|YP_007301805.1| - 0.08 12.4 2.9 0.46 10.0 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF2296 PF10058.4 gi|435849864|ref|YP_007301805.1| - 0.081 12.6 6.1 3.5 7.4 0.1 3.2 3 0 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) DUF2508 PF10704.4 gi|435849864|ref|YP_007301805.1| - 0.084 13.0 0.2 0.29 11.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2508) Thioredoxin_3 PF13192.1 gi|435849864|ref|YP_007301805.1| - 0.098 12.4 0.8 2.2 8.1 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin domain zf-ISL3 PF14690.1 gi|435849864|ref|YP_007301805.1| - 0.1 12.6 0.0 5.1 7.2 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Acetone_carb_G PF08882.6 gi|435849864|ref|YP_007301805.1| - 0.13 12.2 1.4 1.9 8.5 0.0 2.2 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Nudix_N_2 PF14803.1 gi|435849864|ref|YP_007301805.1| - 0.2 11.3 1.0 2.6 7.8 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal Rubredoxin PF00301.15 gi|435849864|ref|YP_007301805.1| - 0.26 11.1 1.9 14 5.6 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin Arc_trans_TRASH PF08394.5 gi|435849864|ref|YP_007301805.1| - 0.44 10.7 2.7 19 5.5 0.4 2.4 2 0 0 2 2 2 0 Archaeal TRASH domain zf-Di19 PF05605.7 gi|435849864|ref|YP_007301805.1| - 0.67 10.1 3.8 13 5.9 0.0 2.7 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Gin PF10764.4 gi|435849864|ref|YP_007301805.1| - 0.78 9.5 4.5 17 5.2 0.8 2.8 2 1 0 2 2 2 0 Inhibitor of sigma-G Gin UPF0547 PF10571.4 gi|435849864|ref|YP_007301805.1| - 1.9 8.2 7.0 6.4 6.5 0.4 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|435849864|ref|YP_007301805.1| - 2 8.2 7.2 8 6.3 0.1 2.6 2 1 0 2 2 2 0 PhnA Zinc-Ribbon DUF2197 PF09963.4 gi|435849864|ref|YP_007301805.1| - 3.6 7.6 8.3 11 6.0 0.0 3.1 3 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2197) zf-B_box PF00643.19 gi|435849864|ref|YP_007301805.1| - 3.7 7.5 6.7 14 5.6 0.1 2.4 3 0 0 3 3 2 0 B-box zinc finger TFIIS_C PF01096.13 gi|435849864|ref|YP_007301805.1| - 5.4 6.7 7.7 4.8 6.8 1.9 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4182 PF13790.1 gi|435849864|ref|YP_007301805.1| - 8 6.3 7.7 9 6.1 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4182) zf-Mss51 PF13824.1 gi|435849864|ref|YP_007301805.1| - 8.8 6.2 6.8 36 4.3 0.0 2.9 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 CHZ PF09649.5 gi|435849865|ref|YP_007301806.1| - 0.12 11.6 0.4 0.18 11.0 0.3 1.3 1 0 0 1 1 1 0 Histone chaperone domain CHZ Prok-RING_1 PF14446.1 gi|435849865|ref|YP_007301806.1| - 0.32 10.7 0.4 0.32 10.7 0.2 1.7 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 HEAT_2 PF13646.1 gi|435849866|ref|YP_007301807.1| - 5e-14 52.3 0.0 3.2e-06 27.3 0.0 2.5 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.11 gi|435849866|ref|YP_007301807.1| - 6.5e-05 23.0 0.4 4.3 8.0 0.0 3.5 3 0 0 3 3 3 2 PBS lyase HEAT-like repeat SNF2_N PF00176.18 gi|435849868|ref|YP_007301809.1| - 3.1e-13 49.1 1.3 1.7e-12 46.7 0.9 2.0 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|435849868|ref|YP_007301809.1| - 3.4e-08 33.2 0.0 9.2e-08 31.8 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain N6_Mtase PF02384.11 gi|435849868|ref|YP_007301809.1| - 5.7e-07 28.9 1.1 8.7e-07 28.3 0.0 1.8 2 0 0 2 2 2 1 N-6 DNA Methylase ResIII PF04851.10 gi|435849868|ref|YP_007301809.1| - 5.3e-05 23.1 0.1 0.00019 21.3 0.1 2.0 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Methyltransf_26 PF13659.1 gi|435849868|ref|YP_007301809.1| - 0.0066 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain AAA_25 PF13481.1 gi|435849868|ref|YP_007301809.1| - 0.11 11.9 0.0 0.59 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain HEAT_2 PF13646.1 gi|435849869|ref|YP_007301810.1| - 1.4e-18 66.9 0.0 3.2e-07 30.5 0.0 5.5 2 1 3 6 6 6 5 HEAT repeats HEAT PF02985.17 gi|435849869|ref|YP_007301810.1| - 6e-15 53.9 0.0 0.11 12.6 0.0 7.7 8 0 0 8 8 8 4 HEAT repeat DUF4116 PF13475.1 gi|435849869|ref|YP_007301810.1| - 2.7e-10 39.5 4.5 0.024 14.0 0.0 6.0 5 1 0 5 5 5 3 Domain of unknown function (DUF4116) HEAT_EZ PF13513.1 gi|435849869|ref|YP_007301810.1| - 6.9e-10 39.1 0.0 0.0019 18.6 0.0 4.9 4 1 1 5 5 5 2 HEAT-like repeat NPV_P10 PF05531.7 gi|435849869|ref|YP_007301810.1| - 6.2e-05 23.1 5.3 0.00029 21.0 3.7 2.2 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein Arm PF00514.18 gi|435849869|ref|YP_007301810.1| - 0.00024 20.7 0.6 0.88 9.4 0.0 4.6 5 0 0 5 5 5 1 Armadillo/beta-catenin-like repeat Ribosomal_S30AE PF02482.14 gi|435849869|ref|YP_007301810.1| - 0.0035 17.7 2.0 0.0084 16.5 0.2 2.4 2 0 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein Baculo_PEP_C PF04513.7 gi|435849869|ref|YP_007301810.1| - 0.03 14.1 2.8 0.049 13.4 0.2 2.3 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2346 PF09803.4 gi|435849869|ref|YP_007301810.1| - 0.11 12.3 1.4 0.75 9.6 0.1 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2346) COG5 PF10392.4 gi|435849869|ref|YP_007301810.1| - 0.38 10.6 6.6 0.12 12.2 2.0 2.0 2 0 0 2 2 2 0 Golgi transport complex subunit 5 Seryl_tRNA_N PF02403.17 gi|435849869|ref|YP_007301810.1| - 0.96 9.4 17.5 0.15 12.0 1.7 3.5 3 1 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain NRDD PF13597.1 gi|435849871|ref|YP_007301812.1| - 2.3e-153 511.1 0.6 2.8e-153 510.8 0.4 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|435849871|ref|YP_007301812.1| - 0.0019 18.6 0.0 0.0044 17.4 0.0 1.6 1 0 0 1 1 1 1 ATP cone domain AAA_5 PF07728.9 gi|435849872|ref|YP_007301813.1| - 5.8e-05 22.8 0.0 0.0003 20.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|435849872|ref|YP_007301813.1| - 9.6e-05 22.0 2.3 0.00046 19.7 0.1 3.0 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Xpo1 PF08389.7 gi|435849873|ref|YP_007301814.1| - 0.01 15.7 0.8 0.023 14.6 0.5 1.6 1 0 0 1 1 1 0 Exportin 1-like protein DUF3826 PF12875.2 gi|435849873|ref|YP_007301814.1| - 0.23 11.1 6.9 1.1 8.8 0.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3826) ScpA_ScpB PF02616.9 gi|435849875|ref|YP_007301816.1| - 2.5e-24 86.1 7.1 2.1e-23 83.1 3.2 2.4 2 1 0 2 2 2 1 ScpA/B protein Rad21_Rec8 PF04824.11 gi|435849875|ref|YP_007301816.1| - 0.014 14.5 0.0 0.044 12.9 0.0 1.8 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein HEAT_2 PF13646.1 gi|435849877|ref|YP_007301818.1| - 1.2e-13 51.1 0.0 7.3e-05 22.9 0.0 3.5 2 1 3 5 5 5 4 HEAT repeats HEAT PF02985.17 gi|435849877|ref|YP_007301818.1| - 3.2e-08 32.9 0.0 13 6.1 0.0 5.7 5 0 0 5 5 5 3 HEAT repeat HEAT_EZ PF13513.1 gi|435849877|ref|YP_007301818.1| - 0.00079 19.8 0.0 1.2 9.7 0.0 4.0 4 2 2 6 6 6 1 HEAT-like repeat DUF16 PF01519.11 gi|435849877|ref|YP_007301818.1| - 0.41 10.8 10.3 0.027 14.6 2.0 2.7 1 1 2 3 3 3 0 Protein of unknown function DUF16 DUF2951 PF11166.3 gi|435849877|ref|YP_007301818.1| - 6.4 6.6 11.6 0.2 11.4 2.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2951) DUF2934 PF11154.3 gi|435849878|ref|YP_007301819.1| - 1.4e-06 27.4 2.7 0.0035 16.6 0.6 3.9 3 2 0 3 3 3 2 Protein of unknown function (DUF2934) Foamy_virus_ENV PF03408.9 gi|435849878|ref|YP_007301819.1| - 0.003 15.1 1.1 0.0034 15.0 0.8 1.1 1 0 0 1 1 1 1 Foamy virus envelope protein ChaC PF04752.7 gi|435849879|ref|YP_007301820.1| - 0.03 14.3 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 ChaC-like protein Cys_rich_VLP PF14194.1 gi|435849880|ref|YP_007301821.1| - 0.21 11.3 1.3 16 5.3 0.1 2.4 1 1 1 2 2 2 0 Cysteine-rich VLP SPASM PF13186.1 gi|435849880|ref|YP_007301821.1| - 0.75 10.1 3.0 1.5 9.2 0.6 2.7 2 1 1 3 3 3 0 Iron-sulfur cluster-binding domain DNA_primase_S PF01896.14 gi|435849882|ref|YP_007301823.1| - 0.017 14.9 0.0 0.2 11.4 0.0 2.3 1 1 0 1 1 1 0 Eukaryotic and archaeal DNA primase small subunit VWA PF00092.23 gi|435849884|ref|YP_007301825.1| - 4e-10 39.6 0.9 8.4e-10 38.6 0.6 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.1 gi|435849884|ref|YP_007301825.1| - 3.6e-08 33.7 0.0 8.2e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|435849884|ref|YP_007301825.1| - 6.9e-06 26.1 0.0 1.3e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 VWA-like domain (DUF2201) DUF2828 PF11443.3 gi|435849884|ref|YP_007301825.1| - 1.7e-05 23.2 0.7 2.5e-05 22.7 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF2828) VWA_3 PF13768.1 gi|435849884|ref|YP_007301825.1| - 0.00088 18.9 0.0 0.0034 17.0 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain Peptidase_M48 PF01435.13 gi|435849884|ref|YP_007301825.1| - 0.002 17.7 0.0 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 VWA_CoxE PF05762.9 gi|435849884|ref|YP_007301825.1| - 0.034 13.2 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein SPOUT_MTase PF02590.12 gi|435849884|ref|YP_007301825.1| - 0.061 13.0 0.5 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 Predicted SPOUT methyltransferase OrfB_Zn_ribbon PF07282.6 gi|435849885|ref|YP_007301826.1| - 7.7e-24 83.1 2.4 1.9e-23 81.9 1.7 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|435849885|ref|YP_007301826.1| - 8.4e-15 54.7 0.6 1.5e-14 54.0 0.4 1.4 1 0 0 1 1 1 1 Probable transposase DHH PF01368.15 gi|435849887|ref|YP_007301828.1| - 7.9e-18 64.4 1.2 1.3e-17 63.7 0.8 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|435849887|ref|YP_007301828.1| - 3.6e-12 45.8 0.1 7e-12 44.8 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain B12-binding PF02310.14 gi|435849887|ref|YP_007301828.1| - 0.0081 16.0 0.1 0.018 14.9 0.1 1.5 1 0 0 1 1 1 1 B12 binding domain SelA PF03841.8 gi|435849887|ref|YP_007301828.1| - 0.028 13.1 0.0 0.046 12.4 0.0 1.3 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase CDC45 PF02724.9 gi|435849887|ref|YP_007301828.1| - 0.06 11.3 0.0 0.34 8.8 0.0 1.9 2 0 0 2 2 2 0 CDC45-like protein Telomerase_RBD PF12009.3 gi|435849888|ref|YP_007301829.1| - 0.019 14.9 0.2 0.02 14.8 0.2 1.1 1 0 0 1 1 1 0 Telomerase ribonucleoprotein complex - RNA binding domain Cactin_mid PF10312.4 gi|435849888|ref|YP_007301829.1| - 0.027 13.7 0.1 0.032 13.5 0.0 1.1 1 0 0 1 1 1 0 Conserved mid region of cactin DUF4624 PF15417.1 gi|435849888|ref|YP_007301829.1| - 0.045 13.3 0.1 0.05 13.2 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4624) Staphostatin_A PF09022.5 gi|435849889|ref|YP_007301830.1| - 0.00037 20.2 0.1 0.00077 19.2 0.0 1.5 1 0 0 1 1 1 1 Staphostatin A DUF1724 PF08350.5 gi|435849890|ref|YP_007301831.1| - 5e-22 77.1 0.1 2.3e-21 75.0 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|435849890|ref|YP_007301831.1| - 9.5e-05 22.1 1.6 0.00013 21.6 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DEAD PF00270.24 gi|435849891|ref|YP_007301832.1| - 1.4e-31 109.3 0.7 2.8e-30 105.0 0.1 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|435849891|ref|YP_007301832.1| - 2.2e-10 40.2 0.0 6.9e-10 38.6 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|435849891|ref|YP_007301832.1| - 2.1e-06 27.7 0.0 1e-05 25.4 0.0 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|435849891|ref|YP_007301832.1| - 3.3e-06 27.1 0.0 5.3e-05 23.2 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|435849891|ref|YP_007301832.1| - 0.0019 17.6 0.0 0.0049 16.3 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF2863 PF11062.3 gi|435849892|ref|YP_007301833.1| - 0.11 10.5 0.0 0.17 9.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) DUF1699 PF08004.6 gi|435849893|ref|YP_007301834.1| - 4.8e-28 97.2 1.8 5.5e-28 97.0 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1951 PF09188.5 gi|435849893|ref|YP_007301834.1| - 0.1 12.5 2.3 0.16 11.8 1.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1951) DUF1400 PF07176.6 gi|435849894|ref|YP_007301835.1| - 0.044 13.6 0.0 0.072 12.9 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1400) DUF4065 PF13274.1 gi|435849895|ref|YP_007301836.1| - 0.014 16.1 0.1 0.021 15.4 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4065) MOR2-PAG1_N PF14222.1 gi|435849895|ref|YP_007301836.1| - 0.032 12.9 0.8 0.041 12.5 0.5 1.1 1 0 0 1 1 1 0 Cell morphogenesis N-terminal DNA_pol_B PF00136.16 gi|435849896|ref|YP_007301837.1| - 9.3e-107 357.6 0.4 1.6e-106 356.8 0.3 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|435849896|ref|YP_007301837.1| - 2.3e-54 184.4 0.0 1e-53 182.3 0.1 2.0 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|435849896|ref|YP_007301837.1| - 0.0029 17.4 0.1 0.015 15.0 0.0 2.1 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|435849896|ref|YP_007301837.1| - 0.021 14.3 0.0 0.054 13.0 0.0 1.6 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB UBA_3 PF09288.5 gi|435849896|ref|YP_007301837.1| - 0.11 12.1 1.4 1.6 8.3 0.0 3.2 3 0 0 3 3 3 0 Fungal ubiquitin-associated domain NosD PF05048.8 gi|435849897|ref|YP_007301838.1| - 3.9e-70 235.6 115.8 2.3e-32 112.0 22.0 5.0 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|435849897|ref|YP_007301838.1| - 1.6e-50 170.9 128.3 9.7e-18 64.4 20.3 5.4 2 1 4 6 6 6 5 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|435849897|ref|YP_007301838.1| - 0.00047 20.3 72.2 0.016 15.3 6.5 5.3 1 1 2 4 4 4 3 Pectate lyase superfamily protein DVL PF08137.7 gi|435849897|ref|YP_007301838.1| - 1 8.8 3.6 1.8 8.1 2.5 1.4 1 0 0 1 1 1 0 DVL family DUF1699 PF08004.6 gi|435849899|ref|YP_007301840.1| - 5.2e-16 58.3 0.8 6.2e-16 58.1 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF4149 PF13664.1 gi|435849900|ref|YP_007301841.1| - 0.0076 16.2 0.0 0.0076 16.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4149) DUF912 PF06024.7 gi|435849901|ref|YP_007301842.1| - 0.15 12.1 1.3 0.15 12.1 0.9 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) ABC2_membrane_2 PF12679.2 gi|435849902|ref|YP_007301843.1| - 0.11 11.3 6.4 0.13 11.1 4.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435849902|ref|YP_007301843.1| - 0.23 10.5 8.8 0.26 10.4 6.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Nop10p PF04135.7 gi|435849903|ref|YP_007301844.1| - 0.76 9.5 3.4 0.49 10.1 0.7 1.9 2 1 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family ABC2_membrane_3 PF12698.2 gi|435849903|ref|YP_007301844.1| - 5.8 5.8 10.7 12 4.7 7.4 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein OrfB_IS605 PF01385.14 gi|435849905|ref|YP_007301846.1| - 3.6e-37 127.9 6.3 8.3e-36 123.4 4.3 2.2 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435849905|ref|YP_007301846.1| - 9.6e-22 76.4 0.2 1.9e-21 75.4 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435849905|ref|YP_007301846.1| - 2.1e-15 55.7 1.1 4.6e-15 54.6 0.8 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Flagellin_N PF00669.15 gi|435849905|ref|YP_007301846.1| - 0.0059 16.4 1.4 0.012 15.4 0.1 2.0 2 0 0 2 2 2 1 Bacterial flagellin N-terminal helical region zf-piccolo PF05715.8 gi|435849905|ref|YP_007301846.1| - 0.012 15.6 0.2 0.029 14.3 0.1 1.6 1 0 0 1 1 1 0 Piccolo Zn-finger Rubredoxin PF00301.15 gi|435849905|ref|YP_007301846.1| - 3.3 7.6 5.8 30 4.5 4.0 2.2 1 1 0 1 1 1 0 Rubredoxin Thioredoxin_3 PF13192.1 gi|435849907|ref|YP_007301848.1| - 0.54 10.0 3.5 16 5.3 0.0 3.5 3 0 0 3 3 3 0 Thioredoxin domain Gp-FAR-1 PF05823.7 gi|435849908|ref|YP_007301849.1| - 0.06 13.2 1.3 1 9.2 0.1 2.3 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) HEAT_2 PF13646.1 gi|435849909|ref|YP_007301850.1| - 1.3e-57 192.0 4.2 2e-15 56.8 0.0 5.4 1 1 5 6 6 6 5 HEAT repeats HEAT_PBS PF03130.11 gi|435849909|ref|YP_007301850.1| - 2.7e-24 83.1 0.3 0.027 14.9 0.0 8.8 9 0 0 9 9 9 5 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|435849909|ref|YP_007301850.1| - 2.5e-17 61.3 0.1 0.00031 20.5 0.0 7.8 8 0 0 8 8 8 4 HEAT repeat HEAT_EZ PF13513.1 gi|435849909|ref|YP_007301850.1| - 5.7e-16 58.4 2.7 0.01 16.2 0.0 6.0 5 1 0 5 5 5 4 HEAT-like repeat RQC PF09382.5 gi|435849909|ref|YP_007301850.1| - 7e-14 51.4 0.1 4.5e-13 48.8 0.0 2.2 2 0 0 2 2 2 1 RQC domain Arm PF00514.18 gi|435849909|ref|YP_007301850.1| - 1.8e-08 33.9 2.3 0.14 12.0 0.0 4.6 5 0 0 5 5 5 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|435849909|ref|YP_007301850.1| - 1.3e-07 30.3 0.1 0.018 13.3 0.0 3.6 1 1 3 4 4 4 3 Adaptin N terminal region Cnd1 PF12717.2 gi|435849909|ref|YP_007301850.1| - 0.001 18.9 0.1 0.19 11.5 0.0 3.5 2 1 2 4 4 4 1 non-SMC mitotic condensation complex subunit 1 Vitellogenin_N PF01347.17 gi|435849909|ref|YP_007301850.1| - 0.034 12.3 0.0 8.2 4.5 0.0 3.4 2 2 1 3 3 3 0 Lipoprotein amino terminal region Peptidase_C13 PF01650.13 gi|435849912|ref|YP_007301853.1| - 9.1e-08 31.7 0.0 1.9e-07 30.6 0.0 1.5 1 1 0 1 1 1 1 Peptidase C13 family Peptidase_C14 PF00656.17 gi|435849912|ref|YP_007301853.1| - 3.7e-06 26.8 0.0 6.1e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Caspase domain EF-hand_5 PF13202.1 gi|435849912|ref|YP_007301853.1| - 0.14 11.5 0.1 0.49 9.8 0.0 2.0 2 0 0 2 2 2 0 EF hand CbiA PF01656.18 gi|435849914|ref|YP_007301855.1| - 1.6e-26 92.9 0.2 1.9e-26 92.6 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|435849914|ref|YP_007301855.1| - 4.6e-12 45.5 0.0 2e-11 43.4 0.0 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|435849914|ref|YP_007301855.1| - 4e-10 39.8 0.1 6.2e-10 39.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|435849914|ref|YP_007301855.1| - 1.9e-07 30.4 0.7 7.1e-07 28.5 0.5 1.9 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|435849914|ref|YP_007301855.1| - 3.5e-07 29.7 0.6 1.1e-05 24.7 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|435849914|ref|YP_007301855.1| - 0.0062 15.9 0.0 0.015 14.6 0.0 1.7 1 1 0 1 1 1 1 YhjQ protein VirC1 PF07015.6 gi|435849914|ref|YP_007301855.1| - 0.029 13.4 0.1 0.16 11.0 0.0 1.9 2 0 0 2 2 2 0 VirC1 protein DUF1357 PF07094.6 gi|435849914|ref|YP_007301855.1| - 0.09 12.2 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1357) SRP54 PF00448.17 gi|435849914|ref|YP_007301855.1| - 0.42 10.0 3.6 9.2 5.6 0.3 2.9 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain Phosphoprotein PF00922.12 gi|435849915|ref|YP_007301856.1| - 0.00059 19.1 1.1 0.00082 18.6 0.8 1.1 1 0 0 1 1 1 1 Vesiculovirus phosphoprotein DUF4100 PF13352.1 gi|435849915|ref|YP_007301856.1| - 0.05 13.0 3.9 1.1 8.6 0.2 2.8 2 1 0 3 3 3 0 Protein of unknown function (DUF4100) DDE_Tnp_1 PF01609.16 gi|435849916|ref|YP_007301857.1| - 9.8e-17 61.1 1.7 9.8e-17 61.1 1.2 1.6 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|435849916|ref|YP_007301857.1| - 0.00086 18.9 0.4 0.0014 18.2 0.3 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF772 PF05598.6 gi|435849916|ref|YP_007301857.1| - 0.0013 18.5 0.6 0.0029 17.4 0.4 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_2 PF13586.1 gi|435849916|ref|YP_007301857.1| - 0.0016 18.5 0.3 0.0044 17.1 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|435849916|ref|YP_007301857.1| - 0.0022 17.7 1.2 0.0054 16.4 0.8 1.7 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|435849916|ref|YP_007301857.1| - 0.006 16.5 0.6 0.011 15.7 0.4 1.6 1 0 0 1 1 1 1 Transposase DDE domain Lactamase_B_2 PF12706.2 gi|435849916|ref|YP_007301857.1| - 0.048 13.1 0.1 0.095 12.2 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DNA_methylase PF00145.12 gi|435849917|ref|YP_007301858.1| - 1.5e-76 257.7 0.0 1.2e-75 254.7 0.0 1.9 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase DUF4180 PF13788.1 gi|435849918|ref|YP_007301859.1| - 0.058 13.0 0.2 0.067 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4180) DUF716 PF04819.7 gi|435849918|ref|YP_007301859.1| - 0.13 11.6 4.6 0.075 12.4 2.0 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF716) Fer4_NifH PF00142.13 gi|435849920|ref|YP_007301861.1| - 0.095 11.8 0.1 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Tox-MPTase2 PF15638.1 gi|435849920|ref|YP_007301861.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Metallopeptidase toxin 2 DUF1837 PF08878.6 gi|435849920|ref|YP_007301861.1| - 0.16 11.5 1.9 0.21 11.1 1.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1837) Peptidase_S13 PF02113.10 gi|435849922|ref|YP_007301863.1| - 0.12 10.8 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family Sgf11 PF08209.6 gi|435849922|ref|YP_007301863.1| - 4 6.8 7.1 0.63 9.4 0.6 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) pRN1_helical PF13010.1 gi|435849923|ref|YP_007301864.1| - 0.066 12.8 1.7 0.21 11.1 0.6 2.1 2 1 0 2 2 2 0 Primase helical domain N6_N4_Mtase PF01555.13 gi|435849924|ref|YP_007301865.1| - 2.1e-18 66.6 0.3 1.5e-10 41.0 0.0 2.2 1 1 1 2 2 2 2 DNA methylase Methyltransf_11 PF08241.7 gi|435849924|ref|YP_007301865.1| - 0.029 14.8 0.0 0.24 11.9 0.0 2.6 3 0 0 3 3 3 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435849924|ref|YP_007301865.1| - 0.052 13.5 0.0 0.12 12.4 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435849924|ref|YP_007301865.1| - 0.094 12.3 0.1 1.1 8.7 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase domain DUF433 PF04255.9 gi|435849924|ref|YP_007301865.1| - 0.12 11.8 0.0 0.33 10.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF433) DUF718 PF05336.8 gi|435849927|ref|YP_007301868.1| - 0.06 13.1 0.0 0.08 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF718) DUF965 PF06135.7 gi|435849927|ref|YP_007301868.1| - 0.092 12.7 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF965) RNase_H_2 PF13482.1 gi|435849930|ref|YP_007301871.1| - 2.8e-08 33.7 4.7 3.1e-06 27.0 0.4 2.4 1 1 1 2 2 2 2 RNase_H superfamily Rad50_zn_hook PF04423.9 gi|435849930|ref|YP_007301871.1| - 0.036 13.5 1.1 0.87 9.1 0.0 2.9 2 0 0 2 2 2 0 Rad50 zinc hook motif DNA_pol_B_exo2 PF10108.4 gi|435849930|ref|YP_007301871.1| - 0.058 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Sgf11 PF08209.6 gi|435849930|ref|YP_007301871.1| - 0.082 12.2 0.1 0.082 12.2 0.1 4.7 6 0 0 6 6 6 0 Sgf11 (transcriptional regulation protein) DUF723 PF05265.8 gi|435849930|ref|YP_007301871.1| - 0.28 10.9 2.9 0.35 10.7 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF723) zf-RING_3 PF14369.1 gi|435849930|ref|YP_007301871.1| - 4 7.5 16.2 4.7 7.2 0.0 4.5 4 1 1 5 5 5 0 zinc-finger RHH_3 PF12651.2 gi|435849932|ref|YP_007301873.1| - 0.02 14.6 0.0 0.71 9.6 0.0 2.8 2 1 1 3 3 3 0 Ribbon-helix-helix domain DNA_methylase PF00145.12 gi|435849933|ref|YP_007301874.1| - 1e-36 126.7 0.0 4.1e-36 124.7 0.0 1.7 1 1 1 2 2 2 1 C-5 cytosine-specific DNA methylase Interferon PF00143.14 gi|435849933|ref|YP_007301874.1| - 0.11 12.4 0.2 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Interferon alpha/beta domain DUF1286 PF06939.6 gi|435849934|ref|YP_007301875.1| - 0.078 13.1 0.6 0.078 13.1 0.4 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1286) NPCBM_assoc PF10633.4 gi|435849937|ref|YP_007301878.1| - 8.6e-06 25.7 2.7 0.14 12.2 0.2 4.6 4 1 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4352 PF11611.3 gi|435849937|ref|YP_007301878.1| - 0.00035 20.6 3.4 1.2 9.2 0.3 3.9 3 1 0 3 3 3 2 Domain of unknown function (DUF4352) DUF1034 PF06280.7 gi|435849937|ref|YP_007301878.1| - 0.0016 18.8 1.3 0.84 10.0 0.1 3.9 1 1 2 3 3 3 1 Fn3-like domain (DUF1034) ChiC PF06483.6 gi|435849937|ref|YP_007301878.1| - 0.0092 15.7 1.4 0.092 12.4 0.3 2.6 1 1 2 3 3 3 1 Chitinase C DUF4251 PF14059.1 gi|435849937|ref|YP_007301878.1| - 0.01 15.6 4.0 2.1 8.1 0.0 3.8 4 2 0 4 4 4 0 Domain of unknown function (DUF4251) DUF11 PF01345.13 gi|435849937|ref|YP_007301878.1| - 0.036 14.1 0.9 0.6 10.1 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function DUF11 ResB PF05140.9 gi|435849937|ref|YP_007301878.1| - 0.054 12.0 0.1 3.9 5.9 0.0 2.1 2 0 0 2 2 2 0 ResB-like family DUF1775 PF07987.6 gi|435849937|ref|YP_007301878.1| - 0.085 12.6 0.2 6.4 6.6 0.0 3.2 2 2 1 3 3 3 0 Domain of unkown function (DUF1775) DUF3988 PF13149.1 gi|435849937|ref|YP_007301878.1| - 0.14 11.6 15.4 0.01 15.3 5.6 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF3988) DUF2808 PF10989.3 gi|435849937|ref|YP_007301878.1| - 0.15 11.6 3.9 1.2 8.7 0.1 3.4 1 1 3 4 4 4 0 Protein of unknown function (DUF2808) BACON PF13004.2 gi|435849937|ref|YP_007301878.1| - 0.28 11.4 8.4 0.54 10.5 0.2 3.6 4 0 0 4 4 3 0 Bacteroidetes-Associated Carbohydrate-binding Often N-terminal CARDB PF07705.6 gi|435849937|ref|YP_007301878.1| - 0.32 11.0 7.9 3.8 7.6 0.4 4.0 2 1 1 4 4 4 0 CARDB HypA PF01155.14 gi|435849938|ref|YP_007301879.1| - 0.0025 17.4 0.4 0.0027 17.3 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|435849938|ref|YP_007301879.1| - 0.0037 16.5 1.2 0.086 12.1 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zf-Sec23_Sec24 PF04810.10 gi|435849938|ref|YP_007301879.1| - 0.0066 15.9 1.1 1.1 8.8 0.1 2.2 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger Zn_Tnp_IS1 PF03811.8 gi|435849938|ref|YP_007301879.1| - 0.019 14.4 2.4 0.15 11.5 0.0 2.1 2 0 0 2 2 2 0 InsA N-terminal domain Lar_restr_allev PF14354.1 gi|435849938|ref|YP_007301879.1| - 0.027 14.7 3.3 0.12 12.7 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2H2_4 PF13894.1 gi|435849938|ref|YP_007301879.1| - 0.03 14.6 0.6 4.8 7.7 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_5 PF13719.1 gi|435849938|ref|YP_007301879.1| - 0.031 13.8 2.9 0.046 13.3 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.17 gi|435849938|ref|YP_007301879.1| - 0.034 13.8 1.7 0.044 13.5 1.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Stc1 PF12898.2 gi|435849938|ref|YP_007301879.1| - 0.05 13.6 0.6 0.05 13.6 0.4 1.1 1 0 0 1 1 1 0 Stc1 domain OrfB_Zn_ribbon PF07282.6 gi|435849938|ref|YP_007301879.1| - 0.053 13.1 2.0 0.62 9.7 0.2 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-Di19 PF05605.7 gi|435849938|ref|YP_007301879.1| - 0.053 13.6 1.1 5.1 7.3 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DZR PF12773.2 gi|435849938|ref|YP_007301879.1| - 0.055 13.2 0.6 0.08 12.7 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_6 PF14599.1 gi|435849938|ref|YP_007301879.1| - 0.078 12.7 1.8 0.11 12.3 1.3 1.3 1 0 0 1 1 1 0 Zinc-ribbon Zn_Tnp_IS1595 PF12760.2 gi|435849938|ref|YP_007301879.1| - 0.08 12.7 1.7 4.6 7.1 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|435849938|ref|YP_007301879.1| - 0.092 13.0 4.5 2.4 8.6 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain DUF329 PF03884.9 gi|435849938|ref|YP_007301879.1| - 0.11 12.0 0.4 0.13 11.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF329) Cys_rich_CPXG PF14255.1 gi|435849938|ref|YP_007301879.1| - 0.11 12.3 0.4 2.6 7.9 0.0 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_4 PF13717.1 gi|435849938|ref|YP_007301879.1| - 0.29 10.8 5.9 1.9 8.2 4.1 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|435849938|ref|YP_007301879.1| - 0.33 10.6 3.9 0.5 10.0 2.7 1.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TFIIS_C PF01096.13 gi|435849938|ref|YP_007301879.1| - 0.39 10.3 2.0 8.5 6.1 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|435849938|ref|YP_007301879.1| - 0.43 9.8 5.3 1.7 7.9 3.8 1.8 1 1 1 2 2 2 0 zinc-ribbon domain DUF866 PF05907.8 gi|435849938|ref|YP_007301879.1| - 0.67 9.4 2.5 5.6 6.4 1.7 1.9 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) Mu-like_Com PF10122.4 gi|435849938|ref|YP_007301879.1| - 0.71 8.9 3.4 1.3 8.1 2.4 1.6 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-BED PF02892.10 gi|435849938|ref|YP_007301879.1| - 0.76 9.5 4.6 1.6 8.5 3.2 1.6 1 1 0 1 1 1 0 BED zinc finger Zn-ribbon_8 PF09723.5 gi|435849938|ref|YP_007301879.1| - 1.3 9.0 6.0 12 5.8 4.2 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-FCS PF06467.9 gi|435849938|ref|YP_007301879.1| - 7.1 6.3 6.9 34 4.1 4.8 1.9 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Disaggr_repeat PF06848.6 gi|435849939|ref|YP_007301880.1| - 6.1e-77 257.1 4.6 1.3e-76 256.1 3.2 1.6 1 0 0 1 1 1 1 Disaggregatase related repeat Disaggr_assoc PF08480.5 gi|435849939|ref|YP_007301880.1| - 3.4e-40 137.6 19.6 3.4e-40 137.6 13.6 2.7 2 1 0 2 2 2 1 Disaggregatase related PKD PF00801.15 gi|435849939|ref|YP_007301880.1| - 1.5e-13 50.2 7.7 1.5e-13 50.2 5.3 2.8 1 1 1 2 2 2 1 PKD domain Beta_helix PF13229.1 gi|435849939|ref|YP_007301880.1| - 1.2e-07 31.5 48.9 5.3e-06 26.2 19.5 4.7 2 2 2 4 4 4 2 Right handed beta helix region TGFb_propeptide PF00688.13 gi|435849939|ref|YP_007301880.1| - 0.00022 20.6 0.0 0.19 10.9 0.0 2.2 2 0 0 2 2 2 2 TGF-beta propeptide FGE-sulfatase PF03781.11 gi|435849940|ref|YP_007301881.1| - 1.7e-48 165.2 8.4 9.8e-48 162.7 5.8 2.1 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 ABC2_membrane_3 PF12698.2 gi|435849940|ref|YP_007301881.1| - 0.78 8.7 8.2 0.71 8.8 2.7 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein AAA_22 PF13401.1 gi|435849941|ref|YP_007301882.1| - 1.8e-14 53.9 0.0 4.8e-14 52.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|435849941|ref|YP_007301882.1| - 1.3e-09 37.6 1.1 2.7e-09 36.6 0.2 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|435849941|ref|YP_007301882.1| - 1.6e-08 34.7 0.0 2e-07 31.1 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|435849941|ref|YP_007301882.1| - 2.1e-07 31.2 0.2 6.6e-07 29.5 0.0 2.0 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|435849941|ref|YP_007301882.1| - 7.7e-05 22.4 0.0 0.00015 21.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|435849941|ref|YP_007301882.1| - 0.00019 21.1 0.0 0.00045 19.9 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_19 PF13245.1 gi|435849941|ref|YP_007301882.1| - 0.00052 19.7 0.0 0.004 16.8 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_5 PF07728.9 gi|435849941|ref|YP_007301882.1| - 0.011 15.4 0.3 0.083 12.6 0.2 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF2075 PF09848.4 gi|435849941|ref|YP_007301882.1| - 0.013 14.4 0.1 0.022 13.7 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|435849941|ref|YP_007301882.1| - 0.019 14.5 0.0 18 4.9 0.0 3.1 3 0 0 3 3 3 0 Bacterial dnaA protein NB-ARC PF00931.17 gi|435849941|ref|YP_007301882.1| - 0.021 13.6 0.0 0.034 13.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|435849941|ref|YP_007301882.1| - 0.026 13.9 0.6 0.066 12.6 0.1 2.1 2 1 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|435849941|ref|YP_007301882.1| - 0.026 15.3 0.1 0.11 13.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|435849941|ref|YP_007301882.1| - 0.026 14.0 0.2 0.065 12.8 0.2 1.8 1 1 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|435849941|ref|YP_007301882.1| - 0.036 12.9 0.0 0.087 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|435849941|ref|YP_007301882.1| - 0.041 14.0 0.1 0.21 11.8 0.0 2.1 2 0 0 2 2 2 0 RNA helicase KAP_NTPase PF07693.9 gi|435849941|ref|YP_007301882.1| - 0.044 12.7 0.4 6.8 5.5 0.0 2.4 1 1 0 2 2 2 0 KAP family P-loop domain AAA_30 PF13604.1 gi|435849941|ref|YP_007301882.1| - 0.058 12.9 0.1 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|435849941|ref|YP_007301882.1| - 0.12 11.9 0.0 0.25 10.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|435849941|ref|YP_007301882.1| - 0.13 11.4 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Cdc6_C PF09079.6 gi|435850243|ref|YP_007311829.1| - 3.8e-26 90.6 0.2 1.3e-25 88.8 0.1 2.0 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|435850243|ref|YP_007311829.1| - 7.7e-15 55.1 0.0 1.5e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|435850243|ref|YP_007311829.1| - 4.5e-12 46.3 1.8 5.1e-10 39.6 0.1 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|435850243|ref|YP_007311829.1| - 6.6e-09 36.0 0.0 1.4e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|435850243|ref|YP_007311829.1| - 9e-08 32.1 0.1 1.5e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|435850243|ref|YP_007311829.1| - 0.00017 21.2 0.0 0.00032 20.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain KAP_NTPase PF07693.9 gi|435850243|ref|YP_007311829.1| - 0.00019 20.5 1.9 0.11 11.4 0.5 2.2 1 1 1 2 2 2 2 KAP family P-loop domain DUF2075 PF09848.4 gi|435850243|ref|YP_007311829.1| - 0.00023 20.2 0.0 0.00031 19.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|435850243|ref|YP_007311829.1| - 0.00076 18.4 0.1 0.0011 17.8 0.1 1.2 1 0 0 1 1 1 1 NB-ARC domain Sigma54_activat PF00158.21 gi|435850243|ref|YP_007311829.1| - 0.0017 17.8 0.0 0.0037 16.7 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|435850243|ref|YP_007311829.1| - 0.0024 16.9 0.0 0.18 10.8 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|435850243|ref|YP_007311829.1| - 0.0026 16.7 0.1 0.0057 15.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|435850243|ref|YP_007311829.1| - 0.0047 16.3 0.0 0.01 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|435850243|ref|YP_007311829.1| - 0.0051 17.6 0.1 0.011 16.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|435850243|ref|YP_007311829.1| - 0.0083 15.6 6.6 0.64 9.4 0.1 3.1 2 1 0 3 3 3 2 DEAD/DEAH box helicase UDPG_MGDP_dh_C PF03720.10 gi|435850243|ref|YP_007311829.1| - 0.0094 16.0 0.1 0.023 14.8 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AAA_18 PF13238.1 gi|435850243|ref|YP_007311829.1| - 0.0096 16.2 0.4 0.03 14.6 0.1 2.1 2 1 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|435850243|ref|YP_007311829.1| - 0.014 14.2 0.0 0.031 13.1 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_2 PF07724.9 gi|435850243|ref|YP_007311829.1| - 0.015 15.2 0.5 0.088 12.7 0.3 2.1 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Bac_DnaA PF00308.13 gi|435850243|ref|YP_007311829.1| - 0.018 14.6 0.1 0.13 11.8 0.1 2.2 1 1 0 1 1 1 0 Bacterial dnaA protein AAA_24 PF13479.1 gi|435850243|ref|YP_007311829.1| - 0.055 13.0 0.2 0.13 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|435850243|ref|YP_007311829.1| - 0.067 12.6 0.1 0.45 9.9 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family ResIII PF04851.10 gi|435850243|ref|YP_007311829.1| - 0.082 12.7 0.0 0.15 11.8 0.0 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|435850243|ref|YP_007311829.1| - 0.091 12.9 0.1 0.31 11.2 0.0 2.1 2 1 0 2 2 1 0 RNA helicase KaiC PF06745.8 gi|435850243|ref|YP_007311829.1| - 0.26 10.3 1.8 3.5 6.6 1.2 2.3 1 1 0 1 1 1 0 KaiC Peptidase_S24 PF00717.18 gi|435850244|ref|YP_007311830.1| - 7.2e-05 22.3 0.2 0.00013 21.4 0.2 1.5 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|435850245|ref|YP_007311831.1| - 5e-16 58.5 0.0 8.7e-16 57.7 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|435850245|ref|YP_007311831.1| - 2.9e-11 43.4 0.0 5.7e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|435850245|ref|YP_007311831.1| - 1.9e-06 27.4 0.8 5.1e-06 26.0 0.2 2.0 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|435850245|ref|YP_007311831.1| - 1.3e-05 24.9 0.2 6.1e-05 22.8 0.0 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DUF4445 PF14574.1 gi|435850246|ref|YP_007311832.1| - 1.7e-104 349.3 3.1 2.3e-104 348.9 2.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_10 PF13237.1 gi|435850246|ref|YP_007311832.1| - 4e-06 26.5 12.4 1.5e-05 24.6 8.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435850246|ref|YP_007311832.1| - 4.2e-06 26.5 11.2 9.3e-06 25.4 7.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435850246|ref|YP_007311832.1| - 7e-06 26.3 11.1 1.4e-05 25.3 7.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435850246|ref|YP_007311832.1| - 1.6e-05 25.0 11.6 3e-05 24.1 8.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435850246|ref|YP_007311832.1| - 1.7e-05 24.4 13.3 0.0044 16.8 0.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435850246|ref|YP_007311832.1| - 5.5e-05 22.8 10.6 0.0046 16.7 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|435850246|ref|YP_007311832.1| - 0.00041 19.8 10.5 0.029 13.9 2.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435850246|ref|YP_007311832.1| - 0.00083 19.7 4.7 0.32 11.4 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435850246|ref|YP_007311832.1| - 0.0017 18.3 10.4 0.0059 16.6 7.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435850246|ref|YP_007311832.1| - 0.014 15.7 5.5 0.11 12.8 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435850246|ref|YP_007311832.1| - 0.055 14.2 13.2 8.5 7.2 1.6 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|435850246|ref|YP_007311832.1| - 0.06 13.7 14.9 0.48 10.8 2.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Porphobil_deam PF01379.15 gi|435850246|ref|YP_007311832.1| - 0.089 11.7 0.0 0.16 10.8 0.0 1.4 1 0 0 1 1 1 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain Fer4_3 PF12798.2 gi|435850246|ref|YP_007311832.1| - 1.9 9.2 15.0 2.7 8.7 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF2769 PF10967.3 gi|435850247|ref|YP_007311833.1| - 2.8e-11 43.5 12.8 2.8e-11 43.5 8.9 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2769) Papo_T_antigen PF02380.10 gi|435850247|ref|YP_007311833.1| - 0.26 11.2 7.0 0.33 10.8 4.8 1.2 1 0 0 1 1 1 0 T-antigen specific domain Myticin-prepro PF10690.4 gi|435850247|ref|YP_007311833.1| - 7.3 6.6 12.7 1.9e+02 2.1 8.8 2.1 1 1 0 1 1 1 0 Myticin pre-proprotein from the mussel TPR_2 PF07719.12 gi|435850248|ref|YP_007311834.1| - 9.6e-29 96.9 13.4 8.7e-08 31.5 0.2 6.1 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_1 PF00515.23 gi|435850248|ref|YP_007311834.1| - 1.3e-26 91.0 16.4 1.8e-07 30.4 0.1 6.4 6 1 1 7 7 7 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|435850248|ref|YP_007311834.1| - 1.8e-24 85.1 4.7 1.1e-11 44.1 0.1 4.4 2 1 2 4 4 4 4 TPR repeat TPR_16 PF13432.1 gi|435850248|ref|YP_007311834.1| - 2e-18 66.5 0.6 5.5e-05 23.7 0.0 4.4 3 2 1 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435850248|ref|YP_007311834.1| - 1e-15 56.2 10.0 0.00041 19.9 0.1 6.2 6 1 0 6 6 6 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|435850248|ref|YP_007311834.1| - 1.5e-15 56.8 5.4 2.4e-05 24.1 0.0 4.5 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435850248|ref|YP_007311834.1| - 2.5e-13 49.3 1.5 0.055 14.1 0.1 5.4 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435850248|ref|YP_007311834.1| - 6.7e-13 48.7 3.9 1.3e-07 31.7 0.0 4.6 3 2 1 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|435850248|ref|YP_007311834.1| - 8.7e-13 47.9 0.1 5.9e-06 26.0 0.0 3.5 2 1 1 3 3 3 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|435850248|ref|YP_007311834.1| - 1.1e-12 47.8 1.7 1.4e-06 28.3 0.0 3.9 3 1 1 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.1 gi|435850248|ref|YP_007311834.1| - 5.7e-12 44.8 3.4 0.012 15.7 0.0 5.6 6 1 0 6 6 6 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435850248|ref|YP_007311834.1| - 1e-09 37.4 2.2 0.18 11.6 0.0 5.2 4 1 0 4 4 4 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|435850248|ref|YP_007311834.1| - 3.4e-07 30.0 1.5 0.5 10.2 0.0 4.1 3 1 1 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat TPR_6 PF13174.1 gi|435850248|ref|YP_007311834.1| - 3.8e-07 30.1 9.1 3.3 8.3 0.0 5.9 5 1 1 6 6 6 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|435850248|ref|YP_007311834.1| - 4.8e-06 25.6 0.0 0.011 14.5 0.0 3.4 2 1 2 4 4 4 2 NMDA receptor-regulated protein 1 TPR_21 PF09976.4 gi|435850248|ref|YP_007311834.1| - 0.00012 22.0 0.1 2.2 8.2 0.0 3.6 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|435850248|ref|YP_007311834.1| - 0.0002 21.1 3.5 23 5.0 0.1 5.2 5 0 0 5 5 5 0 Tetratricopeptide repeat MIT PF04212.13 gi|435850248|ref|YP_007311834.1| - 0.00037 20.3 2.4 6.8 6.6 0.0 5.5 4 2 2 6 6 6 1 MIT (microtubule interacting and transport) domain TPR_3 PF07720.7 gi|435850248|ref|YP_007311834.1| - 0.047 13.5 5.2 21 5.0 0.0 4.6 5 0 0 5 5 5 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|435850248|ref|YP_007311834.1| - 0.049 13.0 5.4 4.8 6.5 0.0 3.8 3 1 1 4 4 4 0 26S proteasome subunit RPN7 TPR_20 PF14561.1 gi|435850248|ref|YP_007311834.1| - 0.071 13.2 0.0 2.9 8.0 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat URO-D PF01208.12 gi|435850249|ref|YP_007311835.1| - 2.6e-77 260.0 0.5 3e-77 259.8 0.3 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Desulfoferrodox PF01880.13 gi|435850250|ref|YP_007311836.1| - 2.1e-25 88.8 4.1 2e-20 72.8 1.0 2.1 2 0 0 2 2 2 2 Desulfoferrodoxin Chlam_vir PF05475.6 gi|435850250|ref|YP_007311836.1| - 0.028 13.5 0.0 0.035 13.2 0.0 1.1 1 0 0 1 1 1 0 Chlamydia virulence protein PGP3-D MMPL PF03176.10 gi|435850251|ref|YP_007311837.1| - 0.27 9.8 3.9 0.31 9.7 2.7 1.1 1 0 0 1 1 1 0 MMPL family PalH PF08733.5 gi|435850251|ref|YP_007311837.1| - 0.28 9.9 3.2 0.31 9.8 2.2 1.0 1 0 0 1 1 1 0 PalH/RIM21 Virul_fac_BrkB PF03631.10 gi|435850252|ref|YP_007311838.1| - 0.58 9.4 8.0 0.74 9.1 5.6 1.1 1 0 0 1 1 1 0 Virulence factor BrkB PepSY_TM_1 PF13172.1 gi|435850252|ref|YP_007311838.1| - 2.2 8.1 0.0 2.2 8.1 0.0 2.3 2 0 0 2 2 2 0 PepSY-associated TM helix AA_permease PF00324.16 gi|435850253|ref|YP_007311839.1| - 1.2e-34 119.4 48.2 1.7e-34 119.0 33.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|435850253|ref|YP_007311839.1| - 4.4e-25 88.1 52.2 6.2e-25 87.6 36.2 1.2 1 0 0 1 1 1 1 Amino acid permease MtmB PF05369.7 gi|435850255|ref|YP_007311841.1| - 6.4e-292 967.3 3.3 7.2e-292 967.2 2.3 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding_2 PF02607.12 gi|435850256|ref|YP_007311842.1| - 3.3e-17 62.2 0.2 5.6e-17 61.5 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.14 gi|435850256|ref|YP_007311842.1| - 3.6e-17 62.3 0.9 6.3e-17 61.5 0.6 1.4 1 0 0 1 1 1 1 B12 binding domain DUF1724 PF08350.5 gi|435850257|ref|YP_007311843.1| - 2.8e-22 77.9 0.2 5.1e-20 70.7 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|435850257|ref|YP_007311843.1| - 0.0018 18.0 0.5 0.0037 17.0 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix RRF PF01765.14 gi|435850257|ref|YP_007311843.1| - 0.061 12.7 0.8 0.11 11.9 0.1 1.7 2 0 0 2 2 2 0 Ribosome recycling factor DUF1724 PF08350.5 gi|435850258|ref|YP_007311844.1| - 2.2e-23 81.5 0.1 6.8e-23 79.9 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|435850258|ref|YP_007311844.1| - 0.061 12.9 0.0 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HisKA_2 PF07568.7 gi|435850259|ref|YP_007311845.1| - 1.1e-30 105.2 2.3 7e-30 102.7 0.9 3.0 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.6 gi|435850259|ref|YP_007311845.1| - 7.3e-17 61.2 0.3 1.1e-14 54.3 0.1 3.1 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|435850259|ref|YP_007311845.1| - 2e-16 60.2 0.2 6.2e-11 42.6 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|435850259|ref|YP_007311845.1| - 4.1e-14 52.2 0.1 9.2e-14 51.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_1 PF02743.13 gi|435850259|ref|YP_007311845.1| - 1.2e-10 40.7 0.3 3.8e-10 39.1 0.2 1.9 1 0 0 1 1 1 1 Cache domain PAS_4 PF08448.5 gi|435850259|ref|YP_007311845.1| - 5.5e-10 39.2 0.0 3.7e-06 26.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|435850259|ref|YP_007311845.1| - 8.7e-09 35.2 0.0 4.4e-07 29.7 0.0 2.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HAMP PF00672.20 gi|435850259|ref|YP_007311845.1| - 5.1e-08 32.9 5.3 5.3e-05 23.3 0.1 4.4 4 1 1 5 5 5 2 HAMP domain PAS_8 PF13188.1 gi|435850259|ref|YP_007311845.1| - 2.3e-07 30.4 0.0 7.1e-07 28.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|435850259|ref|YP_007311845.1| - 6.9e-07 29.0 0.1 0.046 13.5 0.1 3.2 3 0 0 3 3 3 2 PAS fold HWE_HK PF07536.9 gi|435850259|ref|YP_007311845.1| - 0.00019 21.8 0.1 0.00057 20.2 0.1 1.9 1 0 0 1 1 1 1 HWE histidine kinase Response_reg PF00072.19 gi|435850260|ref|YP_007311846.1| - 1.5e-20 73.2 0.1 1.8e-20 73.0 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain 3HCDH_N PF02737.13 gi|435850261|ref|YP_007311847.1| - 2.7e-05 23.9 0.0 4.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|435850261|ref|YP_007311847.1| - 3.6e-05 23.9 0.0 7.6e-05 22.9 0.0 1.5 2 0 0 2 2 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|435850261|ref|YP_007311847.1| - 0.00018 21.3 0.0 0.0003 20.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|435850261|ref|YP_007311847.1| - 0.00019 20.6 0.0 0.00037 19.7 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|435850261|ref|YP_007311847.1| - 0.0012 18.8 0.0 0.0021 18.0 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|435850261|ref|YP_007311847.1| - 0.0061 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|435850261|ref|YP_007311847.1| - 0.0063 16.9 0.0 0.014 15.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|435850261|ref|YP_007311847.1| - 0.015 14.2 0.0 0.077 11.8 0.0 2.0 2 1 0 2 2 2 0 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|435850261|ref|YP_007311847.1| - 0.02 14.6 0.0 0.1 12.3 0.0 2.1 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|435850261|ref|YP_007311847.1| - 0.037 13.4 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|435850261|ref|YP_007311847.1| - 0.046 13.8 0.0 0.088 12.9 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.16 gi|435850261|ref|YP_007311847.1| - 0.064 12.8 0.0 0.095 12.2 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IlvN PF07991.7 gi|435850261|ref|YP_007311847.1| - 0.076 12.3 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|435850261|ref|YP_007311847.1| - 0.1 12.4 0.6 0.48 10.2 0.2 2.1 1 1 1 2 2 2 0 ThiF family Pyr_redox_2 PF07992.9 gi|435850261|ref|YP_007311847.1| - 0.13 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ATP-grasp_4 PF13535.1 gi|435850262|ref|YP_007311848.1| - 5.6e-15 55.5 0.0 2.9e-14 53.2 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|435850262|ref|YP_007311848.1| - 1.3e-09 38.1 0.0 2.3e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|435850262|ref|YP_007311848.1| - 1e-08 34.3 0.0 2e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Ins134_P3_kin PF05770.6 gi|435850262|ref|YP_007311848.1| - 0.0051 15.8 0.0 0.046 12.7 0.0 2.1 2 0 0 2 2 2 1 Inositol 1, 3, 4-trisphosphate 5/6-kinase Dala_Dala_lig_C PF07478.8 gi|435850262|ref|YP_007311848.1| - 0.0087 15.4 0.0 0.021 14.2 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.14 gi|435850262|ref|YP_007311848.1| - 0.0093 15.5 0.0 3.1 7.3 0.0 3.1 4 0 0 4 4 4 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NAD_binding_2 PF03446.10 gi|435850262|ref|YP_007311848.1| - 0.053 13.3 0.0 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase GIDA PF01134.17 gi|435850262|ref|YP_007311848.1| - 0.081 11.7 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|435850262|ref|YP_007311848.1| - 0.11 12.9 0.0 0.28 11.6 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Radical_SAM PF04055.16 gi|435850263|ref|YP_007311849.1| - 2.2e-12 47.4 0.1 1.5e-11 44.7 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|435850263|ref|YP_007311849.1| - 6.7e-07 29.5 0.1 1.1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|435850263|ref|YP_007311849.1| - 8.4e-05 22.5 0.0 0.00015 21.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain BATS PF06968.8 gi|435850263|ref|YP_007311849.1| - 0.0034 17.1 0.2 0.036 13.9 0.0 2.4 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain His_biosynth PF00977.16 gi|435850263|ref|YP_007311849.1| - 0.052 12.8 0.0 0.15 11.2 0.0 1.7 2 0 0 2 2 2 0 Histidine biosynthesis protein tRNA-synt_2b PF00587.20 gi|435850264|ref|YP_007311850.1| - 2.9e-15 56.2 1.4 6e-15 55.2 0.0 2.1 3 0 0 3 3 3 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|435850264|ref|YP_007311850.1| - 5.3e-12 45.1 0.2 3.6e-10 39.1 0.2 2.8 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|435850264|ref|YP_007311850.1| - 1.1e-11 44.3 0.0 2.7e-09 36.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_His PF13393.1 gi|435850264|ref|YP_007311850.1| - 2.7e-05 23.3 0.0 4.4e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase Hydantoinase_A PF01968.13 gi|435850265|ref|YP_007311851.1| - 1e-78 264.4 0.0 2.2e-77 260.0 0.0 2.5 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|435850265|ref|YP_007311851.1| - 1.2e-43 148.6 2.0 8e-41 139.4 0.4 2.9 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|435850265|ref|YP_007311851.1| - 1.3e-07 30.3 0.1 0.0018 16.6 0.0 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|435850265|ref|YP_007311851.1| - 0.00074 18.8 0.8 0.041 13.1 0.0 3.0 3 0 0 3 3 3 1 BadF/BadG/BcrA/BcrD ATPase family Sigma54_AID PF00309.15 gi|435850265|ref|YP_007311851.1| - 0.2 11.1 0.4 0.44 10.0 0.3 1.6 1 0 0 1 1 1 0 Sigma-54 factor, Activator interacting domain (AID) Hydantoinase_A PF01968.13 gi|435850266|ref|YP_007311852.1| - 1.6e-75 253.9 0.0 6e-75 252.0 0.0 1.8 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|435850266|ref|YP_007311852.1| - 4.1e-42 143.6 0.9 1e-38 132.6 0.1 2.7 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|435850266|ref|YP_007311852.1| - 5.1e-08 31.6 0.4 0.0043 15.4 0.0 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|435850266|ref|YP_007311852.1| - 0.0016 17.8 0.0 0.16 11.2 0.0 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.6 gi|435850266|ref|YP_007311852.1| - 0.038 12.9 0.0 0.072 12.0 0.0 1.4 1 0 0 1 1 1 0 StbA protein Sda PF08970.5 gi|435850266|ref|YP_007311852.1| - 0.081 12.4 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 Sporulation inhibitor A FtsA PF14450.1 gi|435850266|ref|YP_007311852.1| - 0.45 10.3 1.9 1.3 8.8 0.2 2.5 2 1 1 3 3 3 0 Cell division protein FtsA DUF1638 PF07796.6 gi|435850267|ref|YP_007311853.1| - 3.2e-35 121.2 0.0 4.4e-35 120.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) PAS_3 PF08447.6 gi|435850268|ref|YP_007311854.1| - 1.9e-36 124.0 1.0 1.4e-16 60.3 0.1 4.0 5 0 0 5 5 5 2 PAS fold GAF_2 PF13185.1 gi|435850268|ref|YP_007311854.1| - 1e-33 116.9 0.0 3.7e-19 69.6 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.1 gi|435850268|ref|YP_007311854.1| - 2.8e-25 88.6 0.0 3.2e-05 24.2 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|435850268|ref|YP_007311854.1| - 1.5e-20 73.0 0.0 4.3e-05 23.2 0.0 4.4 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|435850268|ref|YP_007311854.1| - 1.2e-19 70.3 0.0 0.00021 21.3 0.0 4.3 4 0 0 4 4 4 4 PAS fold GAF_3 PF13492.1 gi|435850268|ref|YP_007311854.1| - 3.2e-13 49.8 0.0 1.1e-06 28.8 0.0 2.8 2 0 0 2 2 2 2 GAF domain PAS_11 PF14598.1 gi|435850268|ref|YP_007311854.1| - 2.6e-10 40.2 0.0 0.026 14.4 0.0 3.6 3 0 0 3 3 3 3 PAS domain GAF PF01590.21 gi|435850268|ref|YP_007311854.1| - 2.6e-09 37.3 0.0 0.0014 18.8 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS_8 PF13188.1 gi|435850268|ref|YP_007311854.1| - 2.6e-09 36.5 0.0 0.00021 21.0 0.0 2.8 2 0 0 2 2 2 2 PAS domain MTTB PF06253.6 gi|435850269|ref|YP_007311855.1| - 4.3e-89 298.5 0.1 5.5e-89 298.2 0.1 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) B12-binding PF02310.14 gi|435850270|ref|YP_007311856.1| - 7.2e-21 74.2 2.7 8e-21 74.1 1.0 1.7 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.12 gi|435850270|ref|YP_007311856.1| - 5.6e-20 71.1 0.3 5.6e-20 71.1 0.2 1.6 2 0 0 2 2 2 1 B12 binding domain EmrE PF13536.1 gi|435850271|ref|YP_007311857.1| - 4e-11 43.1 10.2 4e-11 43.1 7.1 3.6 3 1 1 4 4 4 2 Multidrug resistance efflux transporter EamA PF00892.15 gi|435850271|ref|YP_007311857.1| - 6.2e-07 29.4 42.8 9.8e-06 25.6 9.7 3.2 3 2 0 3 3 3 2 EamA-like transporter family B12-binding PF02310.14 gi|435850274|ref|YP_007311860.1| - 8.5e-26 90.2 0.2 1.5e-25 89.3 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|435850274|ref|YP_007311860.1| - 5.1e-18 64.8 0.6 8.8e-18 64.1 0.4 1.4 1 0 0 1 1 1 1 B12 binding domain Beta-lactamase2 PF13354.1 gi|435850274|ref|YP_007311860.1| - 0.064 12.7 0.1 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase enzyme family Dimeth_Pyl PF09505.5 gi|435850275|ref|YP_007311861.1| - 3.1e-285 945.6 11.3 3.5e-285 945.4 7.8 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) Antimicrobial_7 PF08102.6 gi|435850275|ref|YP_007311861.1| - 0.0059 16.5 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 Scorpion antimicrobial peptide EBV-NA1 PF02905.9 gi|435850275|ref|YP_007311861.1| - 0.092 12.2 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Epstein Barr virus nuclear antigen-1, DNA-binding domain B12-binding_2 PF02607.12 gi|435850276|ref|YP_007311862.1| - 3.3e-17 62.2 0.2 5.6e-17 61.5 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.14 gi|435850276|ref|YP_007311862.1| - 3.6e-17 62.3 0.9 6.3e-17 61.5 0.6 1.4 1 0 0 1 1 1 1 B12 binding domain MtmB PF05369.7 gi|435850277|ref|YP_007311863.1| - 1.7e-292 969.2 3.2 1.9e-292 969.0 2.2 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB MtmB PF05369.7 gi|435850278|ref|YP_007311864.1| - 3.2e-72 243.1 0.0 4.3e-72 242.7 0.0 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB DUF1759 PF03564.10 gi|435850278|ref|YP_007311864.1| - 0.084 12.6 0.1 16 5.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1759) URO-D PF01208.12 gi|435850279|ref|YP_007311865.1| - 2.6e-77 260.0 0.5 3e-77 259.8 0.3 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Wyosine_form PF08608.7 gi|435850280|ref|YP_007311866.1| - 6.1e-22 77.5 0.0 1.4e-21 76.3 0.0 1.7 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|435850280|ref|YP_007311866.1| - 6.1e-19 68.8 0.1 1.6e-18 67.4 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily HAD_2 PF13419.1 gi|435850280|ref|YP_007311866.1| - 0.00074 19.7 0.0 0.0016 18.7 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Fer4_12 PF13353.1 gi|435850280|ref|YP_007311866.1| - 0.013 15.5 0.3 0.068 13.2 0.1 2.1 1 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|435850280|ref|YP_007311866.1| - 0.015 15.3 0.0 0.035 14.1 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain eRF1_3 PF03465.10 gi|435850281|ref|YP_007311867.1| - 1.6e-33 115.3 0.0 2.5e-32 111.4 0.0 2.3 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|435850281|ref|YP_007311867.1| - 2.8e-33 115.0 0.0 5.3e-33 114.1 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_1 PF03463.10 gi|435850281|ref|YP_007311867.1| - 4.2e-24 84.5 0.1 1.2e-23 83.1 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 1 Rad50_zn_hook PF04423.9 gi|435850281|ref|YP_007311867.1| - 0.027 13.9 1.2 0.32 10.4 0.0 3.0 3 0 0 3 3 3 0 Rad50 zinc hook motif tRNA-synt_1d PF00750.14 gi|435850282|ref|YP_007311868.1| - 6.3e-58 196.2 0.0 8.8e-58 195.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|435850282|ref|YP_007311868.1| - 2.5e-32 111.3 0.1 8.3e-32 109.6 0.0 1.9 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|435850282|ref|YP_007311868.1| - 2.5e-11 43.9 0.1 6.9e-11 42.5 0.1 1.8 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|435850282|ref|YP_007311868.1| - 2.1e-06 26.7 0.0 0.024 13.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|435850282|ref|YP_007311868.1| - 2.1e-05 23.3 0.1 0.0046 15.6 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|435850282|ref|YP_007311868.1| - 0.0007 18.8 0.0 0.0012 18.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|435850282|ref|YP_007311868.1| - 0.004 15.2 0.0 0.0065 14.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) ABC_tran PF00005.22 gi|435850283|ref|YP_007311869.1| - 6.8e-27 94.4 0.0 1.1e-26 93.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435850283|ref|YP_007311869.1| - 1.9e-15 57.6 0.0 1.1e-13 51.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|435850283|ref|YP_007311869.1| - 2.4e-05 24.7 0.8 6.3e-05 23.3 0.6 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|435850283|ref|YP_007311869.1| - 0.00088 18.5 0.1 1.1 8.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|435850283|ref|YP_007311869.1| - 0.0039 15.7 0.1 1.2 7.5 0.0 2.3 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|435850283|ref|YP_007311869.1| - 0.01 16.6 0.1 0.09 13.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|435850283|ref|YP_007311869.1| - 0.01 15.3 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|435850283|ref|YP_007311869.1| - 0.016 14.2 0.1 3.3 6.6 0.0 2.2 1 1 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|435850283|ref|YP_007311869.1| - 0.024 14.1 0.0 0.58 9.5 0.0 2.4 2 1 0 2 2 2 0 AAA-like domain MobB PF03205.9 gi|435850283|ref|YP_007311869.1| - 0.026 14.2 0.6 0.084 12.5 0.1 2.0 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B TGT PF01702.13 gi|435850283|ref|YP_007311869.1| - 0.04 13.1 0.0 0.073 12.3 0.0 1.3 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase SRP54 PF00448.17 gi|435850283|ref|YP_007311869.1| - 0.044 13.2 0.0 0.091 12.1 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|435850283|ref|YP_007311869.1| - 0.048 13.5 0.0 0.95 9.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.1 gi|435850283|ref|YP_007311869.1| - 0.05 14.1 0.0 0.097 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_22 PF13401.1 gi|435850283|ref|YP_007311869.1| - 0.063 13.4 0.3 0.48 10.5 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|435850283|ref|YP_007311869.1| - 0.11 12.0 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|435850283|ref|YP_007311869.1| - 0.15 11.2 0.0 0.31 10.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|435850283|ref|YP_007311869.1| - 0.16 11.5 0.1 0.91 9.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain ABC2_membrane_3 PF12698.2 gi|435850284|ref|YP_007311870.1| - 2.1e-17 63.2 13.5 2.1e-17 63.2 9.4 2.8 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|435850285|ref|YP_007311871.1| - 7.4e-21 74.5 11.4 1e-20 74.0 7.9 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|435850285|ref|YP_007311871.1| - 3e-10 39.4 8.8 5.9e-10 38.4 6.1 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435850285|ref|YP_007311871.1| - 1.3e-09 37.6 10.3 3.8e-09 36.0 7.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|435850285|ref|YP_007311871.1| - 2.2e-08 33.5 11.2 2.2e-08 33.5 7.7 2.5 3 0 0 3 3 3 1 ABC-2 type transporter TRAP_beta PF05753.9 gi|435850286|ref|YP_007311872.1| - 3.2e-09 36.2 0.2 6.5e-05 22.1 0.1 3.6 2 1 1 3 3 3 2 Translocon-associated protein beta (TRAPB) DUF756 PF05506.7 gi|435850286|ref|YP_007311872.1| - 0.00032 21.1 0.0 0.16 12.4 0.0 3.4 3 0 0 3 3 3 1 Domain of unknown function (DUF756) DUF4139 PF13598.1 gi|435850286|ref|YP_007311872.1| - 0.0013 18.0 1.3 0.75 9.0 0.3 3.2 3 1 0 3 3 3 2 Domain of unknown function (DUF4139) DUF4137 PF13593.1 gi|435850287|ref|YP_007311873.1| - 0.0014 17.7 5.1 0.0016 17.6 3.6 1.0 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) CbiQ PF02361.11 gi|435850287|ref|YP_007311873.1| - 2.6 7.5 10.1 3.2 7.2 7.0 1.0 1 0 0 1 1 1 0 Cobalt transport protein YcfA PF07927.7 gi|435850288|ref|YP_007311874.1| - 1e-17 63.7 0.1 1.3e-17 63.4 0.1 1.1 1 0 0 1 1 1 1 YcfA-like protein PUB PF09409.5 gi|435850288|ref|YP_007311874.1| - 0.065 13.0 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 PUB domain UPF0150 PF03681.10 gi|435850289|ref|YP_007311875.1| - 1.1e-19 69.7 0.1 1.3e-19 69.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|435850289|ref|YP_007311875.1| - 0.0002 20.8 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) DUF1993 PF09351.5 gi|435850289|ref|YP_007311875.1| - 0.083 12.8 0.0 0.083 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) DUF2254 PF10011.4 gi|435850290|ref|YP_007311876.1| - 8.1e-17 60.7 5.6 5.1e-16 58.1 2.6 2.4 1 1 1 2 2 2 1 Predicted membrane protein (DUF2254) ATP-grasp_5 PF13549.1 gi|435850290|ref|YP_007311876.1| - 0.00077 18.7 0.2 0.0015 17.8 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Tctex-1 PF03645.8 gi|435850290|ref|YP_007311876.1| - 0.19 11.5 2.0 8.2 6.3 0.0 3.2 1 1 1 2 2 2 0 Tctex-1 family YfdX PF10938.3 gi|435850290|ref|YP_007311876.1| - 1.3 8.6 8.8 0.27 10.8 0.3 3.0 2 1 0 2 2 2 0 YfdX protein UPF0150 PF03681.10 gi|435850292|ref|YP_007311878.1| - 1.7e-15 56.3 0.4 2.3e-15 55.9 0.3 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|435850292|ref|YP_007311878.1| - 2.1e-05 23.9 0.0 2.6e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) DUF4473 PF14747.1 gi|435850292|ref|YP_007311878.1| - 0.097 12.9 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4473) YfcL PF08891.6 gi|435850292|ref|YP_007311878.1| - 0.14 12.1 0.1 0.24 11.3 0.0 1.4 2 0 0 2 2 2 0 YfcL protein YcfA PF07927.7 gi|435850293|ref|YP_007311879.1| - 3.4e-15 55.7 0.0 4.3e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 YcfA-like protein Fibrillarin PF01269.12 gi|435850294|ref|YP_007311880.1| - 1.2e-87 292.6 0.0 1.4e-87 292.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.13 gi|435850295|ref|YP_007311881.1| - 7.9e-51 171.3 0.0 1.3e-50 170.5 0.0 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|435850295|ref|YP_007311881.1| - 1.8e-13 50.0 0.0 3.3e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 NOSIC (NUC001) domain Transcrip_reg PF01709.15 gi|435850295|ref|YP_007311881.1| - 0.17 10.9 1.2 0.95 8.5 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator U79_P34 PF03064.11 gi|435850295|ref|YP_007311881.1| - 0.37 10.2 3.0 0.65 9.4 2.1 1.3 1 0 0 1 1 1 0 HSV U79 / HCMV P34 GHMP_kinases_C PF08544.8 gi|435850296|ref|YP_007311882.1| - 3.9e-10 39.7 0.0 8.4e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|435850296|ref|YP_007311882.1| - 8.5e-08 32.1 0.5 1.9e-07 31.0 0.3 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF4032 PF13224.1 gi|435850296|ref|YP_007311882.1| - 0.0083 15.8 0.0 1.1 8.9 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4032) DUF2953 PF11167.3 gi|435850297|ref|YP_007311883.1| - 8.4e-06 25.6 0.0 1.5e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) Spore_YtfJ PF09579.5 gi|435850298|ref|YP_007311884.1| - 3.9e-27 93.9 4.9 6.2e-27 93.2 3.4 1.3 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) Helicase_C_2 PF13307.1 gi|435850299|ref|YP_007311885.1| - 4.2e-29 101.6 0.1 5.5e-28 97.9 0.0 2.5 3 0 0 3 3 3 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|435850299|ref|YP_007311885.1| - 2.9e-21 75.6 1.8 2.3e-20 72.6 1.2 2.1 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|435850299|ref|YP_007311885.1| - 4.1e-06 26.3 0.8 0.013 15.0 0.1 3.3 3 0 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|435850299|ref|YP_007311885.1| - 4.3e-05 23.4 3.3 0.00088 19.1 2.3 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|435850299|ref|YP_007311885.1| - 0.00048 19.4 0.3 0.017 14.3 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein Zot PF05707.7 gi|435850299|ref|YP_007311885.1| - 0.0073 15.7 0.1 1.5 8.2 0.0 2.5 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_34 PF13872.1 gi|435850299|ref|YP_007311885.1| - 0.016 13.9 0.1 0.056 12.2 0.0 1.7 1 1 1 2 2 2 0 P-loop containing NTP hydrolase pore-1 DUF2075 PF09848.4 gi|435850299|ref|YP_007311885.1| - 0.017 14.0 0.3 4.4 6.1 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ArsA_ATPase PF02374.10 gi|435850299|ref|YP_007311885.1| - 0.022 13.8 0.7 0.058 12.4 0.0 1.9 2 0 0 2 2 2 0 Anion-transporting ATPase KaiC PF06745.8 gi|435850299|ref|YP_007311885.1| - 0.032 13.3 0.9 0.066 12.3 0.0 1.9 2 0 0 2 2 2 0 KaiC AAA_30 PF13604.1 gi|435850299|ref|YP_007311885.1| - 0.17 11.4 0.1 0.67 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain SNF2_N PF00176.18 gi|435850299|ref|YP_007311885.1| - 0.21 10.3 0.2 0.8 8.4 0.2 1.9 1 1 0 1 1 1 0 SNF2 family N-terminal domain AAA PF00004.24 gi|435850299|ref|YP_007311885.1| - 0.31 11.2 2.2 13 5.9 0.1 3.4 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) DUF1628 PF07790.6 gi|435850300|ref|YP_007311886.1| - 1.5e-13 51.2 0.2 3.6e-13 50.0 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) OrfB_Zn_ribbon PF07282.6 gi|435850301|ref|YP_007311887.1| - 6.7e-22 76.9 0.7 1.5e-21 75.8 0.5 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|435850301|ref|YP_007311887.1| - 1e-16 61.0 0.3 1.4e-16 60.6 0.2 1.3 1 0 0 1 1 1 1 Probable transposase OmpH PF03938.9 gi|435850301|ref|YP_007311887.1| - 0.019 14.8 1.0 0.027 14.4 0.1 1.6 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Ly49 PF08391.5 gi|435850302|ref|YP_007311888.1| - 0.14 12.2 0.6 0.23 11.6 0.3 1.5 1 1 0 1 1 1 0 Ly49-like protein, N-terminal region MliC PF09864.4 gi|435850304|ref|YP_007311890.1| - 0.076 12.7 0.2 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Membrane-bound lysozyme-inhibitor of c-type lysozyme Metallophos PF00149.23 gi|435850306|ref|YP_007311892.1| - 1.9e-14 53.5 0.0 3.2e-14 52.7 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|435850306|ref|YP_007311892.1| - 1.2e-13 51.2 0.0 2.1e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DHDPS PF00701.17 gi|435850306|ref|YP_007311892.1| - 0.025 13.1 0.0 0.05 12.1 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family AAA_23 PF13476.1 gi|435850307|ref|YP_007311893.1| - 6.7e-19 69.0 4.9 6.7e-19 69.0 3.4 5.3 1 1 3 4 4 4 1 AAA domain SMC_N PF02463.14 gi|435850307|ref|YP_007311893.1| - 5.2e-16 58.5 18.4 1.4e-14 53.9 12.8 3.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|435850307|ref|YP_007311893.1| - 4.6e-10 39.9 14.4 1.5e-06 28.3 2.4 3.8 3 2 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|435850307|ref|YP_007311893.1| - 2.4e-06 26.9 0.0 4.8e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|435850307|ref|YP_007311893.1| - 0.0002 21.2 0.0 0.0019 18.1 0.0 2.4 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Spc7 PF08317.6 gi|435850307|ref|YP_007311893.1| - 0.0036 16.0 18.2 0.0036 16.0 12.6 4.9 1 1 3 5 5 5 1 Spc7 kinetochore protein MukB PF04310.7 gi|435850307|ref|YP_007311893.1| - 0.021 14.1 0.0 0.21 10.8 0.0 2.7 2 0 0 2 2 2 0 MukB N-terminal AAA_16 PF13191.1 gi|435850307|ref|YP_007311893.1| - 0.1 12.5 4.7 0.43 10.5 0.0 3.3 3 2 1 4 4 4 0 AAA ATPase domain Miro PF08477.8 gi|435850307|ref|YP_007311893.1| - 0.11 12.9 0.0 0.11 12.9 0.0 3.2 2 1 0 3 3 3 0 Miro-like protein AAA_13 PF13166.1 gi|435850307|ref|YP_007311893.1| - 1.7 6.9 69.9 2.3 6.5 0.0 4.3 2 1 1 3 3 3 0 AAA domain KCNQ_channel PF03520.9 gi|435850308|ref|YP_007311894.1| - 0.027 13.7 0.4 0.05 12.9 0.3 1.5 1 0 0 1 1 1 0 KCNQ voltage-gated potassium channel V_ATPase_I PF01496.14 gi|435850308|ref|YP_007311894.1| - 0.042 11.7 0.9 0.056 11.3 0.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Spore_II_R PF09551.5 gi|435850308|ref|YP_007311894.1| - 0.07 13.1 0.5 0.15 12.0 0.4 1.6 1 0 0 1 1 1 0 Stage II sporulation protein R (spore_II_R) DUF641 PF04859.7 gi|435850308|ref|YP_007311894.1| - 0.08 12.7 1.4 0.15 11.8 0.6 1.7 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) Mei5 PF10376.4 gi|435850308|ref|YP_007311894.1| - 0.3 10.5 8.1 0.033 13.7 1.5 2.1 2 0 0 2 2 2 0 Double-strand recombination repair protein FliL PF03748.9 gi|435850308|ref|YP_007311894.1| - 0.55 10.2 3.0 1 9.4 2.1 1.4 1 0 0 1 1 1 0 Flagellar basal body-associated protein FliL SMC_N PF02463.14 gi|435850309|ref|YP_007311895.1| - 3.9e-73 245.3 0.0 7e-73 244.4 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|435850309|ref|YP_007311895.1| - 7.5e-34 116.2 0.0 3.2e-33 114.2 0.0 2.2 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_21 PF13304.1 gi|435850309|ref|YP_007311895.1| - 2.4e-10 40.8 7.1 4.5e-06 26.8 0.1 4.0 3 0 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|435850309|ref|YP_007311895.1| - 1.8e-07 30.5 0.0 4.2e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|435850309|ref|YP_007311895.1| - 1.8e-06 28.4 39.8 1.8e-06 28.4 27.6 5.9 2 2 0 2 2 1 1 AAA domain IncA PF04156.9 gi|435850309|ref|YP_007311895.1| - 4.4e-06 26.4 103.4 0.012 15.1 1.3 8.3 3 2 5 8 8 8 5 IncA protein AAA_13 PF13166.1 gi|435850309|ref|YP_007311895.1| - 5.6e-05 21.8 20.3 5.6e-05 21.8 14.1 5.5 3 2 2 5 5 5 2 AAA domain ADIP PF11559.3 gi|435850309|ref|YP_007311895.1| - 0.00032 20.6 1.9 0.00032 20.6 1.3 6.8 3 2 5 8 8 8 2 Afadin- and alpha -actinin-Binding Filament PF00038.16 gi|435850309|ref|YP_007311895.1| - 0.0008 18.9 2.4 0.0008 18.9 1.6 5.8 2 2 4 6 6 5 3 Intermediate filament protein Spc7 PF08317.6 gi|435850309|ref|YP_007311895.1| - 0.00089 18.0 12.3 0.00089 18.0 8.5 6.9 2 2 6 8 8 7 4 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|435850309|ref|YP_007311895.1| - 0.0014 17.8 30.1 0.3 10.2 0.5 4.6 2 2 1 4 4 4 3 Reovirus sigma C capsid protein DUF869 PF05911.6 gi|435850309|ref|YP_007311895.1| - 0.084 11.0 79.9 0.021 13.0 14.7 3.9 2 2 1 3 3 3 0 Plant protein of unknown function (DUF869) TPR_MLP1_2 PF07926.7 gi|435850309|ref|YP_007311895.1| - 0.25 11.0 72.0 0.38 10.4 0.0 7.9 2 2 5 7 7 7 0 TPR/MLP1/MLP2-like protein DUF3584 PF12128.3 gi|435850309|ref|YP_007311895.1| - 0.88 6.8 84.9 0.0036 14.7 12.9 4.6 2 2 0 3 3 3 0 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.4 gi|435850309|ref|YP_007311895.1| - 2.1 8.2 104.9 0.12 12.2 7.7 8.3 2 2 6 8 8 7 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ABC_tran PF00005.22 gi|435850309|ref|YP_007311895.1| - 2.4 8.4 0.0 2.4 8.4 0.0 5.6 4 2 0 4 4 2 0 ABC transporter ScpA_ScpB PF02616.9 gi|435850310|ref|YP_007311896.1| - 9.6e-33 113.7 7.9 7.7e-32 110.7 5.5 1.9 1 1 0 1 1 1 1 ScpA/B protein Rad21_Rec8 PF04824.11 gi|435850310|ref|YP_007311896.1| - 0.0051 15.9 0.0 0.01 15.0 0.0 1.5 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein DUF387 PF04079.11 gi|435850311|ref|YP_007311897.1| - 6.5e-36 123.1 0.0 1.9e-35 121.6 0.0 1.7 2 0 0 2 2 2 1 Putative transcriptional regulators (Ypuh-like) TrmB PF01978.14 gi|435850311|ref|YP_007311897.1| - 0.011 15.3 0.2 1.3 8.7 0.0 3.4 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_15 PF12324.3 gi|435850311|ref|YP_007311897.1| - 0.024 14.3 0.0 4 7.1 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain of alkylmercury lyase YozD PF14162.1 gi|435850311|ref|YP_007311897.1| - 0.31 11.1 3.7 1 9.5 0.2 2.7 2 1 1 3 3 3 0 YozD-like protein TBP PF00352.16 gi|435850312|ref|YP_007311898.1| - 2.3e-65 215.9 0.4 1e-31 108.1 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|435850312|ref|YP_007311898.1| - 2.2e-07 30.8 0.0 0.017 15.1 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3252 PF11623.3 gi|435850312|ref|YP_007311898.1| - 0.0084 15.4 0.0 2.1 7.8 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3252) Lip_prot_lig_C PF10437.4 gi|435850312|ref|YP_007311898.1| - 0.15 11.7 0.4 1 9.0 0.0 2.2 2 1 1 3 3 3 0 Bacterial lipoate protein ligase C-terminus Glycos_transf_2 PF00535.21 gi|435850313|ref|YP_007311899.1| - 7.6e-21 74.5 0.0 1.3e-20 73.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|435850313|ref|YP_007311899.1| - 3.6e-08 33.4 0.0 5e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|435850313|ref|YP_007311899.1| - 0.00025 21.2 0.0 0.00045 20.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Phage_holin_1 PF04531.8 gi|435850313|ref|YP_007311899.1| - 0.14 12.1 0.3 0.28 11.2 0.2 1.5 1 0 0 1 1 1 0 Bacteriophage holin ThiC PF01964.13 gi|435850314|ref|YP_007311900.1| - 5e-174 578.7 1.1 5.7e-174 578.5 0.8 1.0 1 0 0 1 1 1 1 ThiC family Methyltransf_11 PF08241.7 gi|435850315|ref|YP_007311901.1| - 2.5e-19 69.5 0.0 3.7e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|435850315|ref|YP_007311901.1| - 1.6e-17 63.4 0.1 2.2e-17 62.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|435850315|ref|YP_007311901.1| - 2.5e-17 62.8 0.0 3.5e-17 62.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435850315|ref|YP_007311901.1| - 2.8e-14 53.2 0.0 6.5e-14 52.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435850315|ref|YP_007311901.1| - 1.3e-11 45.0 0.0 2e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|435850315|ref|YP_007311901.1| - 1.7e-10 40.8 0.0 2.2e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|435850315|ref|YP_007311901.1| - 2.9e-09 37.3 0.0 4.6e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435850315|ref|YP_007311901.1| - 0.00017 21.5 0.0 0.00023 21.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|435850315|ref|YP_007311901.1| - 0.00018 21.1 0.0 0.00037 20.0 0.0 1.6 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase TPMT PF05724.6 gi|435850315|ref|YP_007311901.1| - 0.00029 20.3 0.0 0.0012 18.3 0.0 1.8 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) RrnaAD PF00398.15 gi|435850315|ref|YP_007311901.1| - 0.00042 19.4 0.0 0.00051 19.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|435850315|ref|YP_007311901.1| - 0.00065 19.2 0.0 0.00091 18.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|435850315|ref|YP_007311901.1| - 0.0013 17.9 0.1 0.002 17.3 0.0 1.3 1 1 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.15 gi|435850315|ref|YP_007311901.1| - 0.0021 17.1 0.0 0.0035 16.4 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|435850315|ref|YP_007311901.1| - 0.0052 16.1 0.0 0.007 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|435850315|ref|YP_007311901.1| - 0.0054 16.1 0.0 0.008 15.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|435850315|ref|YP_007311901.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|435850315|ref|YP_007311901.1| - 0.15 11.5 0.0 0.28 10.7 0.0 1.5 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 CMD PF02627.15 gi|435850316|ref|YP_007311902.1| - 3.6e-08 33.1 0.0 5.1e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PPR PF01535.15 gi|435850316|ref|YP_007311902.1| - 0.14 12.1 0.1 21 5.3 0.0 2.7 2 0 0 2 2 2 0 PPR repeat DUF1294 PF06961.8 gi|435850317|ref|YP_007311903.1| - 1.9e-19 69.3 0.2 2.6e-19 68.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) OSTbeta PF15048.1 gi|435850317|ref|YP_007311903.1| - 0.031 14.3 0.0 0.054 13.5 0.0 1.3 1 0 0 1 1 1 0 Organic solute transporter subunit beta protein WD40 PF00400.27 gi|435850318|ref|YP_007311904.1| - 3.9e-53 175.5 11.3 2.1e-13 49.5 0.1 6.4 7 0 0 7 7 7 6 WD domain, G-beta repeat Nucleoporin_N PF08801.6 gi|435850318|ref|YP_007311904.1| - 2.2e-05 23.4 2.8 0.05 12.3 1.4 3.0 1 1 2 3 3 3 2 Nup133 N terminal like Nbas_N PF15492.1 gi|435850318|ref|YP_007311904.1| - 0.00029 20.0 0.3 1.3 8.0 0.0 3.9 2 1 2 5 5 5 2 Neuroblastoma-amplified sequence, N terminal Nup160 PF11715.3 gi|435850318|ref|YP_007311904.1| - 0.0052 14.9 1.7 0.37 8.8 0.1 3.1 2 1 1 4 4 4 1 Nucleoporin Nup120/160 PD40 PF07676.7 gi|435850318|ref|YP_007311904.1| - 0.031 13.9 1.0 75 3.1 0.0 4.7 5 0 0 5 5 5 0 WD40-like Beta Propeller Repeat Cytochrom_D1 PF02239.11 gi|435850318|ref|YP_007311904.1| - 0.041 12.1 0.0 10 4.2 0.0 2.9 1 1 1 3 3 3 0 Cytochrome D1 heme domain PQQ_3 PF13570.1 gi|435850318|ref|YP_007311904.1| - 0.068 13.4 4.3 12 6.3 0.0 4.6 4 2 1 5 5 5 0 PQQ-like domain SelR PF01641.13 gi|435850319|ref|YP_007311905.1| - 3.5e-52 175.3 0.1 4e-52 175.1 0.0 1.0 1 0 0 1 1 1 1 SelR domain DZR PF12773.2 gi|435850319|ref|YP_007311905.1| - 0.00098 18.8 0.3 0.0037 17.0 0.2 2.0 1 1 0 1 1 1 1 Double zinc ribbon GFA PF04828.9 gi|435850319|ref|YP_007311905.1| - 0.0079 16.1 0.9 3.1 7.8 0.0 2.2 1 1 0 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37e PF01907.14 gi|435850319|ref|YP_007311905.1| - 0.0095 15.7 0.9 4 7.3 0.1 2.3 2 0 0 2 2 2 2 Ribosomal protein L37e TF_Zn_Ribbon PF08271.7 gi|435850319|ref|YP_007311905.1| - 0.014 14.7 2.6 1.3 8.4 0.2 2.8 2 1 1 3 3 3 0 TFIIB zinc-binding Tnp_zf-ribbon_2 PF13842.1 gi|435850319|ref|YP_007311905.1| - 0.016 15.6 0.5 5.7 7.4 0.1 2.5 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF678 PF05077.7 gi|435850319|ref|YP_007311905.1| - 0.017 15.0 0.1 7.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Yippee-Mis18 PF03226.9 gi|435850319|ref|YP_007311905.1| - 0.018 15.0 0.1 0.053 13.5 0.1 1.8 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly GATA PF00320.22 gi|435850319|ref|YP_007311905.1| - 0.038 13.3 0.4 8.4 5.8 0.0 2.5 2 0 0 2 2 2 0 GATA zinc finger zf-ribbon_3 PF13248.1 gi|435850319|ref|YP_007311905.1| - 0.039 13.1 2.3 1.7 7.9 0.4 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|435850319|ref|YP_007311905.1| - 0.046 13.2 1.8 5.2 6.6 0.0 3.1 3 0 0 3 3 3 0 zinc-ribbon domain DUF2296 PF10058.4 gi|435850319|ref|YP_007311905.1| - 0.067 12.9 0.7 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DNA_RNApol_7kD PF03604.8 gi|435850319|ref|YP_007311905.1| - 0.075 12.5 0.7 2.9 7.4 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit HNH_5 PF14279.1 gi|435850319|ref|YP_007311905.1| - 0.086 12.8 0.1 0.58 10.2 0.0 2.1 2 0 0 2 2 2 0 HNH endonuclease DUF2318 PF10080.4 gi|435850319|ref|YP_007311905.1| - 0.088 12.5 0.8 12 5.7 0.0 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) HECT_2 PF09814.4 gi|435850319|ref|YP_007311905.1| - 0.12 11.0 0.1 0.37 9.4 0.0 1.7 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding zf-NADH-PPase PF09297.6 gi|435850319|ref|YP_007311905.1| - 0.14 11.6 1.8 8.7 5.9 0.2 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L22e PF01776.12 gi|435850320|ref|YP_007311906.1| - 0.099 12.6 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal L22e protein family FliW PF02623.10 gi|435850320|ref|YP_007311906.1| - 0.13 11.8 0.0 0.32 10.5 0.0 1.7 2 1 0 2 2 2 0 FliW protein MarR_2 PF12802.2 gi|435850321|ref|YP_007311907.1| - 4.3e-13 48.7 0.1 6.1e-13 48.2 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|435850321|ref|YP_007311907.1| - 5.9e-11 41.9 0.0 1.1e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|435850321|ref|YP_007311907.1| - 3.6e-06 27.2 0.0 7.2e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|435850321|ref|YP_007311907.1| - 4e-05 23.7 0.0 6.3e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.7 gi|435850321|ref|YP_007311907.1| - 0.0002 20.9 0.0 0.00041 19.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|435850321|ref|YP_007311907.1| - 0.00025 20.3 0.1 0.00058 19.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|435850321|ref|YP_007311907.1| - 0.004 17.1 0.0 0.006 16.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|435850321|ref|YP_007311907.1| - 0.011 15.4 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|435850321|ref|YP_007311907.1| - 0.016 15.1 0.0 0.027 14.3 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|435850321|ref|YP_007311907.1| - 0.025 14.6 0.0 0.054 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|435850321|ref|YP_007311907.1| - 0.041 13.6 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|435850321|ref|YP_007311907.1| - 0.05 13.1 0.0 0.071 12.6 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.16 gi|435850321|ref|YP_007311907.1| - 0.062 12.7 0.1 0.13 11.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|435850321|ref|YP_007311907.1| - 0.095 12.3 0.1 0.19 11.3 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MatE PF01554.13 gi|435850322|ref|YP_007311908.1| - 8e-54 181.6 38.9 1.2e-31 109.5 8.0 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|435850322|ref|YP_007311908.1| - 9e-13 48.2 11.7 9e-13 48.2 8.1 4.6 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|435850322|ref|YP_007311908.1| - 2e-07 30.5 41.6 6.1e-06 25.6 8.1 2.5 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein CbiZ PF01955.13 gi|435850323|ref|YP_007311909.1| - 9.2e-53 178.8 0.2 1.2e-52 178.4 0.2 1.2 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase AP_endonuc_2 PF01261.19 gi|435850324|ref|YP_007311910.1| - 3.2e-11 42.9 0.0 8.9e-11 41.4 0.0 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel HTH_20 PF12840.2 gi|435850325|ref|YP_007311911.1| - 1.1e-10 41.1 0.1 1.1e-10 41.1 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|435850325|ref|YP_007311911.1| - 3.7e-07 29.6 0.3 7.8e-07 28.6 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|435850325|ref|YP_007311911.1| - 0.0028 17.3 0.1 0.0054 16.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|435850325|ref|YP_007311911.1| - 0.014 15.0 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.1 gi|435850325|ref|YP_007311911.1| - 0.035 14.1 0.0 0.068 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.12 gi|435850325|ref|YP_007311911.1| - 0.075 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|435850325|ref|YP_007311911.1| - 0.17 11.9 0.9 0.84 9.7 0.0 2.5 2 1 1 3 3 3 0 Winged helix DNA-binding domain Radical_SAM PF04055.16 gi|435850326|ref|YP_007311912.1| - 5.5e-08 33.1 0.0 1e-07 32.3 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.2 gi|435850326|ref|YP_007311912.1| - 4.5e-06 26.4 0.0 1.1e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|435850326|ref|YP_007311912.1| - 6.6e-06 25.5 0.0 1.5e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|435850326|ref|YP_007311912.1| - 0.0024 17.6 0.0 0.0066 16.2 0.0 1.7 1 0 0 1 1 1 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.1 gi|435850326|ref|YP_007311912.1| - 0.031 14.4 0.0 0.29 11.3 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain Fer4_12 PF13353.1 gi|435850326|ref|YP_007311912.1| - 0.059 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain HHH_2 PF12826.2 gi|435850326|ref|YP_007311912.1| - 0.086 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4130 PF13566.1 gi|435850327|ref|YP_007311913.1| - 3.6e-05 23.4 0.1 7e-05 22.4 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4130 Rsa3 PF14615.1 gi|435850327|ref|YP_007311913.1| - 0.0057 15.9 0.4 0.016 14.5 0.3 1.7 1 0 0 1 1 1 1 Ribosome-assembly protein 3 Acyl-CoA_dh_M PF02770.14 gi|435850327|ref|YP_007311913.1| - 0.052 13.0 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, middle domain MutS_V PF00488.16 gi|435850328|ref|YP_007311914.1| - 1.5e-11 44.1 0.0 3.4e-11 43.0 0.0 1.5 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.1 gi|435850328|ref|YP_007311914.1| - 3.3e-05 23.9 0.0 0.0002 21.4 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|435850328|ref|YP_007311914.1| - 8.6e-05 22.3 0.0 0.0003 20.6 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|435850328|ref|YP_007311914.1| - 0.0027 17.3 0.0 0.014 15.0 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|435850328|ref|YP_007311914.1| - 0.0027 17.8 0.2 5.3 7.3 0.0 4.1 2 1 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold AAA_21 PF13304.1 gi|435850328|ref|YP_007311914.1| - 0.01 15.7 2.2 0.4 10.5 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA PF00004.24 gi|435850328|ref|YP_007311914.1| - 0.013 15.7 0.4 0.082 13.1 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) IMS_HHH PF11798.3 gi|435850328|ref|YP_007311914.1| - 0.05 13.6 0.0 0.15 12.1 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif IGPD PF00475.13 gi|435850329|ref|YP_007311915.1| - 4.4e-64 214.7 1.9 5.4e-64 214.4 1.3 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.16 gi|435850330|ref|YP_007311916.1| - 2.9e-74 249.1 1.0 3.3e-74 249.0 0.7 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|435850330|ref|YP_007311916.1| - 4.1e-09 35.8 1.1 1.8e-05 23.8 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.12 gi|435850330|ref|YP_007311916.1| - 1.5e-08 33.8 0.2 0.00048 19.0 0.1 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|435850330|ref|YP_007311916.1| - 7.6e-08 31.8 1.1 1e-06 28.1 0.2 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|435850330|ref|YP_007311916.1| - 8e-08 31.5 1.5 0.00021 20.2 0.1 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase PcrB PF01884.12 gi|435850330|ref|YP_007311916.1| - 1.6e-06 27.5 0.7 0.00018 20.8 0.0 2.2 2 0 0 2 2 2 2 PcrB family TMP-TENI PF02581.12 gi|435850330|ref|YP_007311916.1| - 1.8e-05 23.9 0.3 9e-05 21.6 0.1 2.0 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|435850330|ref|YP_007311916.1| - 4.4e-05 22.5 1.2 0.009 14.9 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|435850330|ref|YP_007311916.1| - 8.3e-05 21.6 0.2 0.057 12.3 0.0 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|435850330|ref|YP_007311916.1| - 0.0003 19.9 0.1 0.0026 16.8 0.0 2.0 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase ThiG PF05690.9 gi|435850330|ref|YP_007311916.1| - 0.00061 18.9 1.6 0.45 9.5 0.0 2.1 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG ADH_zinc_N PF00107.21 gi|435850330|ref|YP_007311916.1| - 0.00084 18.8 0.2 0.14 11.6 0.0 2.2 2 0 0 2 2 2 1 Zinc-binding dehydrogenase DUF561 PF04481.7 gi|435850330|ref|YP_007311916.1| - 0.0012 17.7 0.1 0.002 17.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF561) Glu_synthase PF01645.12 gi|435850330|ref|YP_007311916.1| - 0.0017 17.3 2.7 0.0098 14.8 0.1 2.3 2 1 0 2 2 2 1 Conserved region in glutamate synthase Trp_syntA PF00290.15 gi|435850330|ref|YP_007311916.1| - 0.0049 15.4 0.5 0.12 10.9 0.1 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain HisG PF01634.13 gi|435850331|ref|YP_007311917.1| - 5.8e-52 175.5 0.2 8.3e-52 175.0 0.2 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|435850331|ref|YP_007311917.1| - 8.3e-25 86.5 0.3 1.8e-24 85.4 0.2 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|435850331|ref|YP_007311917.1| - 5e-06 26.2 0.1 0.0037 16.8 0.0 2.4 1 1 1 2 2 2 2 NMT1/THI5 like AdoMet_Synthase PF01941.14 gi|435850332|ref|YP_007311918.1| - 4.2e-179 595.1 2.9 4.8e-179 594.9 2.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Disaggr_repeat PF06848.6 gi|435850333|ref|YP_007311919.1| - 5.2e-77 257.4 3.8 1.2e-76 256.2 2.0 2.1 2 0 0 2 2 2 1 Disaggregatase related repeat Disaggr_assoc PF08480.5 gi|435850333|ref|YP_007311919.1| - 1.5e-29 102.8 17.6 1.5e-29 102.8 12.2 2.8 3 0 0 3 3 3 1 Disaggregatase related Beta_helix PF13229.1 gi|435850333|ref|YP_007311919.1| - 5e-13 49.1 53.0 2.6e-06 27.2 19.3 3.4 1 1 1 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|435850333|ref|YP_007311919.1| - 9.2e-08 32.4 12.4 9.2e-08 32.4 8.6 2.7 1 1 1 2 2 2 1 Pectate lyase superfamily protein TGFb_propeptide PF00688.13 gi|435850333|ref|YP_007311919.1| - 0.0035 16.6 0.0 0.82 8.8 0.0 2.2 2 0 0 2 2 2 2 TGF-beta propeptide LVIVD PF08309.6 gi|435850334|ref|YP_007311920.1| - 3.5e-176 569.9 98.4 8.2e-15 53.5 0.1 14.4 13 1 1 14 14 14 14 LVIVD repeat Beta_propel PF09826.4 gi|435850334|ref|YP_007311920.1| - 3.2e-12 45.5 3.7 0.0018 16.6 0.0 6.3 1 1 5 6 6 6 6 Beta propeller domain PQQ_3 PF13570.1 gi|435850334|ref|YP_007311920.1| - 1.7e-06 28.0 87.9 0.29 11.4 0.2 14.1 14 0 0 14 14 14 9 PQQ-like domain VCBS PF13517.1 gi|435850334|ref|YP_007311920.1| - 0.0014 18.9 64.8 0.0015 18.8 6.0 8.6 6 3 4 10 10 10 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella CPSF_A PF03178.10 gi|435850334|ref|YP_007311920.1| - 0.0094 15.0 0.1 2.4 7.1 0.0 3.6 3 1 1 4 4 4 1 CPSF A subunit region tRNA-synt_1e PF01406.14 gi|435850335|ref|YP_007311921.1| - 6e-77 258.7 0.0 9.1e-77 258.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|435850335|ref|YP_007311921.1| - 1.4e-13 50.2 0.1 2.5e-08 33.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|435850335|ref|YP_007311921.1| - 6.2e-07 27.8 0.0 2.4e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|435850335|ref|YP_007311921.1| - 0.0014 17.4 0.0 0.06 12.1 0.0 2.6 2 1 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|435850335|ref|YP_007311921.1| - 0.021 13.5 0.0 0.16 10.6 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (K) MMR_HSR1_C PF08438.5 gi|435850336|ref|YP_007311922.1| - 6.3e-33 113.2 0.1 1.2e-32 112.3 0.0 1.5 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|435850336|ref|YP_007311922.1| - 6.1e-17 61.6 0.0 2.6e-16 59.6 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|435850336|ref|YP_007311922.1| - 4.3e-10 39.2 0.1 2.2e-09 36.9 0.0 2.2 3 0 0 3 3 3 1 TGS domain FeoB_N PF02421.13 gi|435850336|ref|YP_007311922.1| - 2.3e-07 30.2 0.4 2.5e-06 26.8 0.0 2.5 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.8 gi|435850336|ref|YP_007311922.1| - 0.063 13.0 0.0 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF933) Prenyltransf PF01255.14 gi|435850337|ref|YP_007311923.1| - 8.5e-36 123.1 0.1 4.4e-32 111.0 0.0 2.0 1 1 1 2 2 2 2 Putative undecaprenyl diphosphate synthase Acetyltransf_1 PF00583.19 gi|435850338|ref|YP_007311924.1| - 1.2e-15 57.2 0.1 1.7e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|435850338|ref|YP_007311924.1| - 2.3e-15 56.5 0.1 3.2e-15 56.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|435850338|ref|YP_007311924.1| - 7.6e-09 35.6 0.1 7.6e-09 35.6 0.1 1.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|435850338|ref|YP_007311924.1| - 8e-09 35.6 0.0 9.7e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|435850338|ref|YP_007311924.1| - 6.5e-05 22.7 0.0 0.00031 20.6 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|435850338|ref|YP_007311924.1| - 0.00038 20.1 0.0 0.00054 19.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|435850338|ref|YP_007311924.1| - 0.00051 19.9 0.0 0.00075 19.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|435850338|ref|YP_007311924.1| - 0.0054 16.6 0.0 0.0079 16.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF2977 PF11192.3 gi|435850338|ref|YP_007311924.1| - 0.026 14.3 0.0 0.063 13.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2977) Acetyltransf_CG PF14542.1 gi|435850338|ref|YP_007311924.1| - 0.029 14.2 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Ribosomal_S4e PF00900.15 gi|435850339|ref|YP_007311925.1| - 0.012 15.2 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Ribosomal family S4e Ribosomal_S27e PF01667.12 gi|435850339|ref|YP_007311925.1| - 0.23 11.0 2.9 0.54 9.8 2.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|435850339|ref|YP_007311925.1| - 0.28 11.1 1.3 0.68 9.9 0.9 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|435850339|ref|YP_007311925.1| - 0.45 10.0 4.3 1.8 8.0 3.0 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF1451 PF07295.6 gi|435850339|ref|YP_007311925.1| - 0.75 9.5 3.1 2.6 7.8 1.4 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1451) AAA PF00004.24 gi|435850340|ref|YP_007311926.1| - 1.9e-36 125.2 0.1 6.8e-36 123.3 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|435850340|ref|YP_007311926.1| - 3.7e-07 30.9 0.2 2.2e-06 28.4 0.0 2.5 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|435850340|ref|YP_007311926.1| - 1.3e-06 28.2 0.2 7.6e-06 25.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|435850340|ref|YP_007311926.1| - 8.8e-05 22.5 0.3 0.045 13.7 0.0 2.6 1 1 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|435850340|ref|YP_007311926.1| - 9e-05 22.3 0.0 0.00023 21.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|435850340|ref|YP_007311926.1| - 0.00016 20.7 0.1 0.00064 18.7 0.0 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|435850340|ref|YP_007311926.1| - 0.00055 20.2 0.0 0.002 18.4 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|435850340|ref|YP_007311926.1| - 0.00062 19.7 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|435850340|ref|YP_007311926.1| - 0.00073 19.6 0.1 0.056 13.5 0.1 2.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|435850340|ref|YP_007311926.1| - 0.00083 18.8 0.1 0.062 12.6 0.0 2.5 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.8 gi|435850340|ref|YP_007311926.1| - 0.001 17.8 0.0 0.0019 16.9 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus Zeta_toxin PF06414.7 gi|435850340|ref|YP_007311926.1| - 0.0019 17.3 0.0 0.004 16.2 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.1 gi|435850340|ref|YP_007311926.1| - 0.0021 18.0 0.0 0.0061 16.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|435850340|ref|YP_007311926.1| - 0.0025 16.8 0.0 0.005 15.9 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|435850340|ref|YP_007311926.1| - 0.0036 16.4 0.0 0.01 14.9 0.0 1.8 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|435850340|ref|YP_007311926.1| - 0.006 16.3 0.1 0.021 14.5 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|435850340|ref|YP_007311926.1| - 0.0061 16.6 0.0 0.36 10.8 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_14 PF13173.1 gi|435850340|ref|YP_007311926.1| - 0.0081 16.0 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|435850340|ref|YP_007311926.1| - 0.0092 15.4 0.0 0.023 14.1 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|435850340|ref|YP_007311926.1| - 0.012 15.0 0.0 0.026 14.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain SKI PF01202.17 gi|435850340|ref|YP_007311926.1| - 0.017 14.9 0.0 0.041 13.7 0.0 1.7 1 0 0 1 1 1 0 Shikimate kinase MMR_HSR1 PF01926.18 gi|435850340|ref|YP_007311926.1| - 0.021 14.7 0.0 0.05 13.5 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.1 gi|435850340|ref|YP_007311926.1| - 0.036 13.6 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain CPT PF07931.7 gi|435850340|ref|YP_007311926.1| - 0.049 13.2 0.0 0.097 12.2 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_11 PF13086.1 gi|435850340|ref|YP_007311926.1| - 0.049 13.1 0.0 0.11 11.9 0.0 1.7 1 1 1 2 2 2 0 AAA domain Cytidylate_kin2 PF13189.1 gi|435850340|ref|YP_007311926.1| - 0.061 13.2 0.0 0.18 11.6 0.0 1.8 2 0 0 2 2 1 0 Cytidylate kinase-like family NACHT PF05729.7 gi|435850340|ref|YP_007311926.1| - 0.11 12.1 0.1 4.7 6.8 0.0 2.5 1 1 1 2 2 2 0 NACHT domain DEAD PF00270.24 gi|435850340|ref|YP_007311926.1| - 0.15 11.5 0.1 17 4.8 0.0 2.5 2 0 0 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.17 gi|435850340|ref|YP_007311926.1| - 0.16 12.1 0.0 0.32 11.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Lactamase_B_2 PF12706.2 gi|435850341|ref|YP_007311927.1| - 1.4e-24 86.7 1.0 1.7e-24 86.4 0.7 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|435850341|ref|YP_007311927.1| - 8.5e-19 67.9 1.3 1.2e-18 67.4 0.9 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|435850341|ref|YP_007311927.1| - 6.3e-07 29.2 1.5 1.1e-06 28.4 1.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF1049 PF06305.6 gi|435850342|ref|YP_007311928.1| - 0.036 13.5 0.2 0.036 13.5 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) CcmD PF04995.9 gi|435850342|ref|YP_007311928.1| - 0.091 12.5 0.4 0.17 11.6 0.3 1.5 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) ABC2_membrane PF01061.19 gi|435850343|ref|YP_007311929.1| - 1.1e-20 73.7 20.3 1.1e-20 73.7 14.1 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|435850343|ref|YP_007311929.1| - 3.2e-08 33.0 30.6 3.2e-08 33.0 21.2 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|435850344|ref|YP_007311930.1| - 4.4e-34 117.7 0.0 7.2e-34 117.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435850344|ref|YP_007311930.1| - 2.2e-16 60.6 0.1 2.3e-11 44.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|435850344|ref|YP_007311930.1| - 2.6e-05 23.4 0.0 0.0045 16.0 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|435850344|ref|YP_007311930.1| - 0.00043 20.6 0.1 0.00055 20.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|435850344|ref|YP_007311930.1| - 0.0014 17.8 0.0 0.064 12.4 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|435850344|ref|YP_007311930.1| - 0.0036 16.7 0.1 0.14 11.6 0.1 2.1 1 1 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|435850344|ref|YP_007311930.1| - 0.012 15.1 0.1 0.022 14.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|435850344|ref|YP_007311930.1| - 0.11 12.0 0.0 0.38 10.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|435850344|ref|YP_007311930.1| - 0.14 12.3 0.3 2 8.5 0.0 2.7 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) Fasciclin PF02469.17 gi|435850345|ref|YP_007311931.1| - 1.6e-26 92.7 0.0 2e-26 92.4 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain NPR PF07391.6 gi|435850345|ref|YP_007311931.1| - 0.51 10.7 7.8 1 9.8 5.4 1.5 1 0 0 1 1 1 0 NPR nonapeptide repeat (2 copies) DHBP_synthase PF00926.14 gi|435850346|ref|YP_007311932.1| - 1.7e-64 216.6 0.1 2e-64 216.4 0.1 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|435850347|ref|YP_007311933.1| - 2.7e-47 159.3 0.0 3.8e-47 158.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 DUF104 PF01954.11 gi|435850347|ref|YP_007311933.1| - 0.012 15.6 2.7 0.36 10.8 0.7 2.8 3 0 0 3 3 3 0 Protein of unknown function DUF104 MarR PF01047.17 gi|435850347|ref|YP_007311933.1| - 0.015 14.9 0.2 0.034 13.8 0.1 1.6 2 0 0 2 2 2 0 MarR family Antitoxin-MazE PF04014.13 gi|435850347|ref|YP_007311933.1| - 0.03 14.0 0.3 0.1 12.3 0.2 1.9 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MarR_2 PF12802.2 gi|435850347|ref|YP_007311933.1| - 0.042 13.5 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|435850347|ref|YP_007311933.1| - 0.078 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF1934 PF09148.5 gi|435850347|ref|YP_007311933.1| - 0.12 12.1 0.0 0.27 10.9 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1934) Pro_isomerase PF00160.16 gi|435850348|ref|YP_007311934.1| - 3.3e-49 167.0 0.6 3.8e-49 166.8 0.4 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Sigma70_r1_2 PF00140.15 gi|435850350|ref|YP_007311936.1| - 0.14 11.8 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70 factor, region 1.2 DUF1628 PF07790.6 gi|435850351|ref|YP_007311937.1| - 0.00011 22.8 1.9 0.00017 22.2 0.7 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) DUF4302 PF14135.1 gi|435850351|ref|YP_007311937.1| - 0.084 12.2 0.3 0.11 11.9 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4302) CpcD PF01383.16 gi|435850351|ref|YP_007311937.1| - 3.6 7.8 5.6 2.4 8.3 0.1 2.7 3 1 0 3 3 3 0 CpcD/allophycocyanin linker domain Fer4 PF00037.22 gi|435850355|ref|YP_007311941.1| - 8.4e-16 56.8 18.7 3.6e-08 32.6 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435850355|ref|YP_007311941.1| - 1.2e-12 47.4 10.0 1.4e-12 47.2 6.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435850355|ref|YP_007311941.1| - 2.7e-12 46.8 12.7 3.4e-12 46.5 8.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435850355|ref|YP_007311941.1| - 2.6e-11 42.7 17.9 1.1e-05 25.0 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435850355|ref|YP_007311941.1| - 5e-11 43.1 9.7 3.6e-05 24.4 1.4 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|435850355|ref|YP_007311941.1| - 5.5e-11 41.8 18.0 3.6e-06 26.5 3.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435850355|ref|YP_007311941.1| - 9.1e-11 41.8 12.9 2e-10 40.7 9.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435850355|ref|YP_007311941.1| - 1.4e-09 37.4 13.2 9.4e-05 22.4 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435850355|ref|YP_007311941.1| - 1.8e-09 37.2 11.9 2.8e-09 36.6 8.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435850355|ref|YP_007311941.1| - 1.1e-07 31.7 12.2 5.6e-07 29.5 8.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|435850355|ref|YP_007311941.1| - 1e-06 29.0 17.6 0.00055 20.3 2.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435850355|ref|YP_007311941.1| - 1.1e-06 28.9 11.6 0.0018 18.5 0.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435850355|ref|YP_007311941.1| - 1.4e-06 28.4 21.2 0.00079 19.8 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435850355|ref|YP_007311941.1| - 0.0001 22.5 13.1 0.029 14.7 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|435850355|ref|YP_007311941.1| - 0.0016 18.2 5.3 0.0019 18.0 3.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435850355|ref|YP_007311941.1| - 0.0031 18.0 17.1 0.39 11.3 11.8 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain zf-4CXXC_R1 PF10497.4 gi|435850355|ref|YP_007311941.1| - 8.7 6.5 9.3 36 4.5 6.5 1.8 1 1 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 Semialdhyde_dhC PF02774.13 gi|435850356|ref|YP_007311942.1| - 3e-39 134.7 0.0 5.6e-39 133.8 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|435850356|ref|YP_007311942.1| - 1.6e-34 118.8 0.1 2.9e-34 117.9 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|435850356|ref|YP_007311942.1| - 1.8e-05 25.2 0.0 3.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.11 gi|435850356|ref|YP_007311942.1| - 0.0077 16.7 0.0 0.023 15.2 0.0 1.7 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DapB_N PF01113.15 gi|435850356|ref|YP_007311942.1| - 0.0081 16.0 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|435850356|ref|YP_007311942.1| - 0.043 13.8 0.3 0.13 12.2 0.2 1.7 1 1 0 1 1 1 0 NADH(P)-binding Gp_dh_C PF02800.15 gi|435850356|ref|YP_007311942.1| - 0.081 12.3 0.0 0.35 10.2 0.0 2.0 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain tRNA_anti-like PF12869.2 gi|435850357|ref|YP_007311943.1| - 0.00063 19.2 0.7 0.0044 16.5 0.1 2.3 2 0 0 2 2 2 1 tRNA_anti-like V_ATPase_I PF01496.14 gi|435850357|ref|YP_007311943.1| - 0.027 12.3 0.3 0.034 12.0 0.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family AA_kinase PF00696.23 gi|435850358|ref|YP_007311944.1| - 4.3e-33 114.8 1.6 5.2e-33 114.5 1.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family SKI PF01202.17 gi|435850358|ref|YP_007311944.1| - 0.0066 16.3 0.1 0.019 14.8 0.0 1.8 2 0 0 2 2 2 1 Shikimate kinase AlaDh_PNT_C PF01262.16 gi|435850358|ref|YP_007311944.1| - 0.022 14.3 0.7 0.043 13.3 0.0 1.8 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain MoCF_biosynth PF00994.19 gi|435850358|ref|YP_007311944.1| - 0.08 12.3 0.5 1.2 8.5 0.0 2.2 1 1 0 2 2 2 0 Probable molybdopterin binding domain Glyco_hydro_2 PF00703.16 gi|435850359|ref|YP_007311945.1| - 3.8e-05 24.0 0.0 0.021 15.2 0.0 2.6 2 1 0 2 2 2 2 Glycosyl hydrolases family 2 Y_Y_Y PF07495.8 gi|435850359|ref|YP_007311945.1| - 0.0031 17.2 0.0 0.008 15.9 0.0 1.7 1 0 0 1 1 1 1 Y_Y_Y domain MacB_PCD PF12704.2 gi|435850360|ref|YP_007311946.1| - 3.2e-32 111.9 0.4 3.2e-32 111.9 0.3 2.5 3 0 0 3 3 3 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|435850360|ref|YP_007311946.1| - 5.5e-23 81.0 19.7 9.8e-23 80.2 10.5 2.3 2 0 0 2 2 2 1 FtsX-like permease family DUF4064 PF13273.1 gi|435850360|ref|YP_007311946.1| - 0.23 11.5 0.1 0.23 11.5 0.0 4.1 3 1 1 4 4 4 0 Protein of unknown function (DUF4064) Phage_holin_4 PF05105.7 gi|435850360|ref|YP_007311946.1| - 0.89 9.2 6.8 0.29 10.8 2.0 2.2 2 1 0 2 2 2 0 Holin family ABC_tran PF00005.22 gi|435850361|ref|YP_007311947.1| - 1e-33 116.5 0.0 1.6e-33 115.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435850361|ref|YP_007311947.1| - 2.5e-09 37.5 0.0 3.8e-07 30.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|435850361|ref|YP_007311947.1| - 1.1e-08 34.6 0.1 4.3e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|435850361|ref|YP_007311947.1| - 1.7e-05 24.2 0.2 3e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|435850361|ref|YP_007311947.1| - 8.4e-05 22.6 0.4 0.00018 21.5 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|435850361|ref|YP_007311947.1| - 0.00033 20.5 0.3 0.0022 17.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|435850361|ref|YP_007311947.1| - 0.0015 18.0 0.4 0.0052 16.2 0.2 1.8 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|435850361|ref|YP_007311947.1| - 0.0028 16.8 0.1 0.0068 15.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|435850361|ref|YP_007311947.1| - 0.003 17.4 0.0 0.05 13.5 0.0 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|435850361|ref|YP_007311947.1| - 0.004 17.9 0.8 0.0073 17.1 0.6 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|435850361|ref|YP_007311947.1| - 0.0042 17.4 1.4 0.38 11.0 1.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|435850361|ref|YP_007311947.1| - 0.0043 17.3 0.1 0.01 16.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|435850361|ref|YP_007311947.1| - 0.0094 15.3 0.5 0.025 13.9 0.1 1.8 2 1 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|435850361|ref|YP_007311947.1| - 0.0098 15.0 0.2 4.1 6.4 0.0 2.5 3 0 0 3 3 3 1 KaiC AAA_22 PF13401.1 gi|435850361|ref|YP_007311947.1| - 0.0099 16.0 0.3 0.051 13.7 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|435850361|ref|YP_007311947.1| - 0.018 14.6 0.2 0.06 12.9 0.1 1.7 2 0 0 2 2 2 0 AAA domain Zot PF05707.7 gi|435850361|ref|YP_007311947.1| - 0.028 13.8 0.1 0.71 9.3 0.0 2.1 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_15 PF13175.1 gi|435850361|ref|YP_007311947.1| - 0.033 13.2 0.0 0.37 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ATP-synt_ab PF00006.20 gi|435850361|ref|YP_007311947.1| - 0.034 13.6 0.1 0.039 13.4 0.1 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|435850361|ref|YP_007311947.1| - 0.039 12.8 0.4 0.35 9.6 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain ATP_bind_1 PF03029.12 gi|435850361|ref|YP_007311947.1| - 0.045 13.3 0.5 1 8.8 0.2 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ArgK PF03308.11 gi|435850361|ref|YP_007311947.1| - 0.065 12.0 1.0 0.2 10.3 0.3 1.9 2 0 0 2 2 2 0 ArgK protein Arch_ATPase PF01637.13 gi|435850361|ref|YP_007311947.1| - 0.067 12.8 0.3 0.61 9.7 0.2 2.0 1 1 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|435850361|ref|YP_007311947.1| - 0.078 12.6 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|435850361|ref|YP_007311947.1| - 0.1 13.1 0.1 0.38 11.2 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein IstB_IS21 PF01695.12 gi|435850361|ref|YP_007311947.1| - 0.1 11.9 0.4 0.25 10.7 0.0 1.7 2 1 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.7 gi|435850361|ref|YP_007311947.1| - 0.12 12.0 0.1 0.22 11.1 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|435850361|ref|YP_007311947.1| - 0.13 12.0 0.4 0.47 10.2 0.2 2.0 2 0 0 2 2 2 0 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|435850361|ref|YP_007311947.1| - 0.15 11.5 0.3 0.25 10.8 0.2 1.5 1 1 0 1 1 1 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|435850361|ref|YP_007311947.1| - 0.21 11.3 1.2 0.35 10.6 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 MMR_HSR1 PF01926.18 gi|435850361|ref|YP_007311947.1| - 0.22 11.4 1.4 1 9.3 0.9 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF2605 PF10792.4 gi|435850362|ref|YP_007311948.1| - 0.00031 20.3 1.4 0.00039 20.0 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2605) MscS_porin PF12795.2 gi|435850362|ref|YP_007311948.1| - 0.005 16.2 7.5 0.0055 16.0 5.2 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF4598 PF15370.1 gi|435850362|ref|YP_007311948.1| - 0.0075 16.5 6.4 0.1 12.8 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4598) DUF2317 PF10079.4 gi|435850362|ref|YP_007311948.1| - 0.018 13.7 3.5 0.019 13.5 2.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) GLYCAM-1 PF05242.6 gi|435850362|ref|YP_007311948.1| - 0.02 14.8 2.8 0.023 14.6 1.9 1.2 1 0 0 1 1 1 0 Glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1) Lebercilin PF15619.1 gi|435850362|ref|YP_007311948.1| - 0.026 13.9 11.4 0.035 13.5 7.9 1.2 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease RmuC PF02646.11 gi|435850362|ref|YP_007311948.1| - 0.053 12.3 4.7 0.065 12.0 3.3 1.1 1 0 0 1 1 1 0 RmuC family CobN-Mg_chel PF02514.11 gi|435850362|ref|YP_007311948.1| - 0.069 10.5 4.7 0.073 10.4 3.2 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase CorA PF01544.13 gi|435850362|ref|YP_007311948.1| - 0.071 12.1 2.4 0.077 12.0 1.7 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein BRE1 PF08647.6 gi|435850362|ref|YP_007311948.1| - 0.072 13.0 12.0 0.11 12.5 8.3 1.4 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase Mnd1 PF03962.10 gi|435850362|ref|YP_007311948.1| - 0.074 12.7 9.8 0.089 12.4 6.8 1.1 1 0 0 1 1 1 0 Mnd1 family Bul1_C PF04426.7 gi|435850362|ref|YP_007311948.1| - 0.1 11.7 5.6 0.13 11.4 3.9 1.2 1 0 0 1 1 1 0 Bul1 C terminus HR1 PF02185.11 gi|435850362|ref|YP_007311948.1| - 0.11 12.2 10.1 0.91 9.3 0.2 2.2 1 1 1 2 2 2 0 Hr1 repeat SNARE PF05739.14 gi|435850362|ref|YP_007311948.1| - 0.12 12.1 3.0 0.21 11.2 0.1 2.6 2 1 1 3 3 3 0 SNARE domain IncA PF04156.9 gi|435850362|ref|YP_007311948.1| - 0.14 11.7 9.4 0.17 11.4 6.5 1.1 1 0 0 1 1 1 0 IncA protein CENP-F_leu_zip PF10473.4 gi|435850362|ref|YP_007311948.1| - 0.23 11.2 14.1 0.3 10.9 5.8 2.0 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fmp27_WPPW PF10359.4 gi|435850362|ref|YP_007311948.1| - 0.6 8.4 8.0 0.74 8.1 5.6 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CCDC-167 PF15188.1 gi|435850362|ref|YP_007311948.1| - 0.71 9.8 6.9 0.88 9.5 4.7 1.4 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 AAA_32 PF13654.1 gi|435850362|ref|YP_007311948.1| - 0.77 8.3 7.5 0.84 8.2 5.2 1.0 1 0 0 1 1 1 0 AAA domain CASP_C PF08172.7 gi|435850362|ref|YP_007311948.1| - 0.88 8.5 7.7 1.5 7.7 4.2 1.9 1 1 1 2 2 2 0 CASP C terminal Atg14 PF10186.4 gi|435850362|ref|YP_007311948.1| - 1.6 7.5 9.9 1.9 7.3 6.9 1.0 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 TMPIT PF07851.8 gi|435850362|ref|YP_007311948.1| - 1.7 7.6 6.8 1.7 7.6 4.7 1.1 1 0 0 1 1 1 0 TMPIT-like protein APG6 PF04111.7 gi|435850362|ref|YP_007311948.1| - 2 7.3 11.0 2.3 7.1 7.6 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF2408 PF10303.4 gi|435850362|ref|YP_007311948.1| - 2.9 8.0 9.7 5.8 7.0 6.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DUF342 PF03961.8 gi|435850362|ref|YP_007311948.1| - 3 6.1 9.3 3.1 6.1 6.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Enkurin PF13864.1 gi|435850362|ref|YP_007311948.1| - 3 8.1 9.7 4.8 7.4 1.3 2.3 1 1 0 1 1 1 0 Calmodulin-binding Occludin_ELL PF07303.8 gi|435850362|ref|YP_007311948.1| - 3 8.6 9.2 8.3 7.2 5.6 2.0 1 1 1 2 2 2 0 Occludin homology domain Fib_alpha PF08702.5 gi|435850362|ref|YP_007311948.1| - 3 7.9 8.6 4.2 7.4 5.7 1.4 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Cut12 PF11500.3 gi|435850362|ref|YP_007311948.1| - 3.5 7.3 11.5 6 6.5 7.7 1.6 1 1 0 1 1 1 0 Spindle pole body formation-associated protein B12-binding_2 PF02607.12 gi|435850363|ref|YP_007311949.1| - 1e-14 54.2 0.1 2.7e-14 52.9 0.1 1.7 1 0 0 1 1 1 1 B12 binding domain UBN2 PF14223.1 gi|435850363|ref|YP_007311949.1| - 0.042 13.6 0.5 0.95 9.2 0.1 2.3 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type Iso_dh PF00180.15 gi|435850364|ref|YP_007311950.1| - 1.1e-95 320.5 0.0 1.3e-95 320.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|435850365|ref|YP_007311951.1| - 8.3e-20 71.2 0.0 1.3e-19 70.6 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|435850365|ref|YP_007311951.1| - 0.00032 20.1 0.0 0.017 14.5 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus TIP49 PF06068.8 gi|435850365|ref|YP_007311951.1| - 0.061 12.0 0.0 0.076 11.7 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus AAA_10 PF12846.2 gi|435850366|ref|YP_007311952.1| - 1.2e-14 54.5 0.0 2.8e-13 49.9 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|435850366|ref|YP_007311952.1| - 2.4e-07 30.8 0.0 5.5e-07 29.6 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function DUF87 Zot PF05707.7 gi|435850366|ref|YP_007311952.1| - 3.2e-05 23.4 0.0 0.00013 21.5 0.0 1.9 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|435850366|ref|YP_007311952.1| - 5.9e-05 22.6 0.3 0.049 13.1 0.0 2.6 2 1 0 2 2 2 2 FtsK/SpoIIIE family AAA PF00004.24 gi|435850366|ref|YP_007311952.1| - 0.00041 20.5 0.0 0.061 13.5 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF853 PF05872.7 gi|435850366|ref|YP_007311952.1| - 0.0021 16.4 0.0 0.011 14.1 0.0 1.9 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.1 gi|435850366|ref|YP_007311952.1| - 0.005 16.9 0.0 0.15 12.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain DUF1297 PF06973.7 gi|435850367|ref|YP_007311953.1| - 4.7e-64 215.1 0.0 6.4e-64 214.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|435850367|ref|YP_007311953.1| - 1.4e-47 160.4 0.0 2.6e-47 159.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.9 gi|435850367|ref|YP_007311953.1| - 6.7e-05 22.7 0.0 0.00014 21.7 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|435850367|ref|YP_007311953.1| - 0.001 18.8 0.1 0.75 9.5 0.0 2.5 1 1 0 2 2 2 2 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|435850367|ref|YP_007311953.1| - 0.0074 15.5 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain HTH_20 PF12840.2 gi|435850368|ref|YP_007311954.1| - 4.7e-10 39.1 0.0 8.8e-10 38.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|435850368|ref|YP_007311954.1| - 1.4e-06 27.5 0.2 8.9e-05 21.8 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|435850368|ref|YP_007311954.1| - 5e-05 22.9 0.0 0.00012 21.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|435850368|ref|YP_007311954.1| - 0.00053 19.5 0.1 0.0022 17.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|435850368|ref|YP_007311954.1| - 0.0016 17.9 0.0 0.076 12.6 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|435850368|ref|YP_007311954.1| - 0.0036 17.6 0.1 0.0085 16.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|435850368|ref|YP_007311954.1| - 0.0038 16.8 0.0 0.075 12.7 0.0 2.4 2 0 0 2 2 2 1 MarR family DUF742 PF05331.6 gi|435850368|ref|YP_007311954.1| - 0.0099 15.4 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF742) Phage_rep_org_N PF09681.5 gi|435850368|ref|YP_007311954.1| - 0.58 9.7 3.2 4.5 6.8 0.1 2.6 2 1 1 3 3 3 0 N-terminal phage replisome organiser (Phage_rep_org_N) PseudoU_synth_1 PF01416.15 gi|435850369|ref|YP_007311955.1| - 1.8e-31 108.6 0.0 2.7e-16 59.9 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF45 PF01863.12 gi|435850370|ref|YP_007311956.1| - 3.3e-35 121.7 0.4 2.6e-31 109.0 0.1 2.0 1 1 1 2 2 2 2 Protein of unknown function DUF45 SprT-like PF10263.4 gi|435850370|ref|YP_007311956.1| - 1.2e-07 31.5 0.0 1.9e-07 30.8 0.0 1.4 1 1 0 1 1 1 1 SprT-like family WLM PF08325.5 gi|435850370|ref|YP_007311956.1| - 6.5e-05 22.8 0.5 9.7e-05 22.3 0.3 1.2 1 0 0 1 1 1 1 WLM domain TPR_1 PF00515.23 gi|435850371|ref|YP_007311957.1| - 2.2e-128 413.1 60.9 6.8e-11 41.3 0.0 14.0 14 0 0 14 14 14 14 Tetratricopeptide repeat TPR_11 PF13414.1 gi|435850371|ref|YP_007311957.1| - 4.3e-120 391.5 70.5 1e-18 66.6 0.5 8.3 3 2 4 9 9 9 9 TPR repeat TPR_2 PF07719.12 gi|435850371|ref|YP_007311957.1| - 4.9e-103 328.9 56.4 1.2e-08 34.2 0.0 14.0 14 0 0 14 14 14 14 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435850371|ref|YP_007311957.1| - 2e-90 295.8 41.2 1.7e-12 47.6 0.0 8.5 3 2 8 11 11 11 11 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435850371|ref|YP_007311957.1| - 1.3e-87 280.8 45.6 4.8e-07 29.4 0.0 13.1 12 1 1 13 13 13 13 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435850371|ref|YP_007311957.1| - 2.8e-65 211.3 63.7 3.2e-06 26.5 0.0 14.0 11 2 3 14 14 14 13 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435850371|ref|YP_007311957.1| - 4.7e-59 191.4 25.3 2.8e-05 24.3 0.1 13.6 1 1 13 14 14 14 13 Tetratricopeptide repeat TPR_12 PF13424.1 gi|435850371|ref|YP_007311957.1| - 7.9e-56 185.9 37.5 3.1e-09 36.6 0.7 8.4 2 2 6 8 8 8 8 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435850371|ref|YP_007311957.1| - 8e-53 176.6 36.0 1.2e-08 35.1 0.1 8.1 5 1 4 9 9 9 9 Tetratricopeptide repeat TPR_9 PF13371.1 gi|435850371|ref|YP_007311957.1| - 4.8e-41 138.4 7.7 6.9e-08 32.2 0.0 8.6 3 1 8 11 11 11 10 Tetratricopeptide repeat Apc3 PF12895.2 gi|435850371|ref|YP_007311957.1| - 2.1e-38 130.3 44.6 8.7e-09 35.4 0.0 6.9 3 3 6 9 9 9 9 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|435850371|ref|YP_007311957.1| - 7e-35 117.1 38.8 0.031 14.7 0.0 14.1 14 0 0 14 14 14 10 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435850371|ref|YP_007311957.1| - 3.7e-24 82.5 29.5 0.0064 16.2 0.0 12.3 12 1 1 13 13 13 7 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|435850371|ref|YP_007311957.1| - 2.8e-17 62.3 18.8 0.008 16.0 0.0 9.1 9 0 0 9 9 8 3 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|435850371|ref|YP_007311957.1| - 4e-16 58.8 22.1 7.3e-05 21.7 0.2 6.7 1 1 4 6 6 6 5 NMDA receptor-regulated protein 1 BTAD PF03704.12 gi|435850371|ref|YP_007311957.1| - 8.4e-15 55.3 7.3 0.0069 16.7 0.1 6.1 2 2 3 6 6 6 5 Bacterial transcriptional activator domain DUF3856 PF12968.2 gi|435850371|ref|YP_007311957.1| - 3.6e-12 46.3 21.6 0.89 9.3 0.1 9.9 1 1 8 10 10 10 4 Domain of Unknown Function (DUF3856) TPR_10 PF13374.1 gi|435850371|ref|YP_007311957.1| - 1e-09 38.0 27.6 0.22 11.4 0.1 11.2 12 0 0 12 12 12 2 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|435850371|ref|YP_007311957.1| - 2.6e-09 37.4 16.7 0.19 11.9 0.2 6.8 5 3 3 8 8 8 4 Alkyl sulfatase dimerisation MIT PF04212.13 gi|435850371|ref|YP_007311957.1| - 1.1e-08 34.8 51.6 0.29 11.0 0.1 12.2 8 2 3 11 11 11 4 MIT (microtubule interacting and transport) domain TPR_5 PF12688.2 gi|435850371|ref|YP_007311957.1| - 4.7e-08 33.1 4.8 0.42 10.6 0.3 6.3 2 2 5 7 7 7 2 Tetratrico peptide repeat TPR_20 PF14561.1 gi|435850371|ref|YP_007311957.1| - 6.1e-08 32.6 15.8 0.046 13.8 0.2 7.6 2 2 5 9 9 9 2 Tetratricopeptide repeat TPR_3 PF07720.7 gi|435850371|ref|YP_007311957.1| - 9.1e-08 31.7 32.7 0.12 12.2 0.5 10.5 12 0 0 12 12 12 2 Tetratricopeptide repeat FAT PF02259.18 gi|435850371|ref|YP_007311957.1| - 3.2e-07 29.6 27.1 0.31 9.9 0.2 8.0 1 1 6 7 7 7 2 FAT domain DUF627 PF04781.7 gi|435850371|ref|YP_007311957.1| - 3.8e-05 23.2 0.2 25 4.5 0.0 5.8 6 1 1 7 7 7 0 Protein of unknown function (DUF627) Apc5 PF12862.2 gi|435850371|ref|YP_007311957.1| - 0.0002 21.1 19.9 4.7 7.1 0.2 10.2 6 3 4 10 10 10 0 Anaphase-promoting complex subunit 5 ChAPs PF09295.5 gi|435850371|ref|YP_007311957.1| - 0.00062 18.6 6.3 0.31 9.7 0.2 3.9 1 1 3 5 5 5 2 ChAPs (Chs5p-Arf1p-binding proteins) Rapsyn_N PF10579.4 gi|435850371|ref|YP_007311957.1| - 0.0016 18.2 12.1 14 5.5 0.0 6.6 5 3 3 8 8 7 0 Rapsyn N-terminal myristoylation and linker region PPTA PF01239.17 gi|435850371|ref|YP_007311957.1| - 0.0037 16.5 18.6 3.6 7.1 0.3 7.9 9 0 0 9 9 9 1 Protein prenyltransferase alpha subunit repeat Sda PF08970.5 gi|435850371|ref|YP_007311957.1| - 0.0079 15.6 10.6 33 4.0 0.0 7.4 9 0 0 9 9 8 0 Sporulation inhibitor A TPR_4 PF07721.9 gi|435850371|ref|YP_007311957.1| - 0.012 16.0 0.1 16 6.2 0.2 4.4 4 0 0 4 4 3 0 Tetratricopeptide repeat PPR PF01535.15 gi|435850371|ref|YP_007311957.1| - 0.017 15.0 9.6 7.8 6.7 0.1 7.8 9 0 0 9 9 8 0 PPR repeat Paf67 PF10255.4 gi|435850371|ref|YP_007311957.1| - 0.023 13.5 3.8 2.2 7.0 0.0 4.1 3 2 2 5 5 5 0 RNA polymerase I-associated factor PAF67 Lambda_Kil PF06301.6 gi|435850371|ref|YP_007311957.1| - 0.075 12.4 12.1 43 3.6 0.0 7.8 9 0 0 9 9 8 0 Bacteriophage lambda Kil protein RPN7 PF10602.4 gi|435850371|ref|YP_007311957.1| - 1.2 8.4 14.9 0.5 9.7 0.6 6.0 4 1 2 6 6 6 0 26S proteasome subunit RPN7 Coatomer_E PF04733.9 gi|435850371|ref|YP_007311957.1| - 1.7 7.7 8.6 15 4.6 0.2 4.4 2 1 2 5 5 5 0 Coatomer epsilon subunit DNA_pol_lambd_f PF10391.4 gi|435850371|ref|YP_007311957.1| - 2.7 7.5 5.5 23 4.6 0.0 4.9 7 0 0 7 7 5 0 Fingers domain of DNA polymerase lambda UPF0020 PF01170.13 gi|435850372|ref|YP_007311958.1| - 3.4e-33 114.7 0.0 4.9e-33 114.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|435850372|ref|YP_007311958.1| - 2.7e-13 49.9 0.0 5.9e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|435850372|ref|YP_007311958.1| - 2.5e-10 40.4 0.2 4.1e-10 39.7 0.1 1.3 1 0 0 1 1 1 1 THUMP domain N6_N4_Mtase PF01555.13 gi|435850372|ref|YP_007311958.1| - 2.4e-06 27.1 0.0 0.042 13.3 0.0 2.2 2 0 0 2 2 2 2 DNA methylase N6_Mtase PF02384.11 gi|435850372|ref|YP_007311958.1| - 0.00012 21.3 0.0 0.0002 20.5 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Cons_hypoth95 PF03602.10 gi|435850372|ref|YP_007311958.1| - 0.00025 20.4 0.0 0.00044 19.7 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|435850372|ref|YP_007311958.1| - 0.00035 21.0 0.0 0.001 19.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|435850372|ref|YP_007311958.1| - 0.0015 18.1 0.0 0.0027 17.2 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PAPS_reduct PF01507.14 gi|435850373|ref|YP_007311959.1| - 6e-45 153.1 0.0 1.1e-44 152.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.15 gi|435850373|ref|YP_007311959.1| - 2.6e-21 75.1 0.3 7.5e-21 73.6 0.2 1.9 1 0 0 1 1 1 1 PUA domain Fer4_7 PF12838.2 gi|435850373|ref|YP_007311959.1| - 1.2e-06 28.7 13.2 1.2e-06 28.7 9.2 2.8 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435850373|ref|YP_007311959.1| - 1.7e-06 28.1 13.7 1.7e-06 28.1 9.5 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435850373|ref|YP_007311959.1| - 3.9e-05 23.0 25.1 0.001 18.5 4.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|435850373|ref|YP_007311959.1| - 4e-05 23.8 9.8 0.0081 16.4 0.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435850373|ref|YP_007311959.1| - 5.2e-05 22.9 10.4 5.2e-05 22.9 7.2 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435850373|ref|YP_007311959.1| - 0.0032 17.2 14.5 0.0032 17.2 10.0 3.1 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435850373|ref|YP_007311959.1| - 0.0042 17.0 12.6 0.0042 17.0 8.8 3.3 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435850373|ref|YP_007311959.1| - 0.0068 16.2 3.4 0.0068 16.2 2.4 3.5 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435850373|ref|YP_007311959.1| - 0.0097 15.7 3.9 0.0097 15.7 2.7 3.2 3 0 0 3 3 2 1 4Fe-4S binding domain Mut7-C PF01927.11 gi|435850373|ref|YP_007311959.1| - 0.069 13.1 0.1 0.22 11.5 0.1 1.9 1 0 0 1 1 1 0 Mut7-C RNAse domain Fer4_16 PF13484.1 gi|435850373|ref|YP_007311959.1| - 0.33 11.7 19.0 0.6 10.9 1.2 3.5 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|435850373|ref|YP_007311959.1| - 0.4 11.1 20.2 0.41 11.1 3.8 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435850373|ref|YP_007311959.1| - 1.2 9.8 29.5 0.12 12.9 4.7 3.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435850373|ref|YP_007311959.1| - 4.9 7.6 12.1 10 6.5 2.2 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain AICARFT_IMPCHas PF01808.13 gi|435850374|ref|YP_007311960.1| - 3e-86 289.3 0.0 3.6e-86 289.1 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.17 gi|435850374|ref|YP_007311960.1| - 5.4e-28 96.7 0.0 1e-27 95.8 0.0 1.5 1 0 0 1 1 1 1 MGS-like domain MgsA_C PF12002.3 gi|435850374|ref|YP_007311960.1| - 0.038 13.6 0.0 0.084 12.5 0.0 1.5 1 0 0 1 1 1 0 MgsA AAA+ ATPase C terminal DUF1724 PF08350.5 gi|435850375|ref|YP_007311961.1| - 5.7e-21 73.8 0.2 1.4e-20 72.6 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_27 PF13463.1 gi|435850375|ref|YP_007311961.1| - 0.07 13.4 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|435850375|ref|YP_007311961.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 MarR family UbiA PF01040.13 gi|435850376|ref|YP_007311962.1| - 2.2e-24 86.0 11.8 2.9e-24 85.6 8.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Chordopox_A13L PF05961.6 gi|435850376|ref|YP_007311962.1| - 0.031 14.2 0.5 0.62 10.0 0.0 2.7 2 0 0 2 2 2 0 Chordopoxvirus A13L protein Metalloenzyme PF01676.13 gi|435850377|ref|YP_007311963.1| - 4.4e-86 288.3 0.0 5.2e-86 288.1 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.8 gi|435850377|ref|YP_007311963.1| - 8.4e-85 283.6 0.0 1.1e-84 283.2 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Phosphodiest PF01663.17 gi|435850377|ref|YP_007311963.1| - 5.2e-05 22.7 0.0 8.2e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|435850377|ref|YP_007311963.1| - 0.0065 16.1 0.5 0.014 15.0 0.3 1.5 1 0 0 1 1 1 1 PglZ domain Alk_phosphatase PF00245.15 gi|435850377|ref|YP_007311963.1| - 0.052 12.2 0.2 2.6 6.6 0.1 2.1 2 0 0 2 2 2 0 Alkaline phosphatase XPG_I PF00867.13 gi|435850378|ref|YP_007311964.1| - 2.3e-23 82.0 0.1 7.7e-23 80.3 0.0 2.0 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.12 gi|435850378|ref|YP_007311964.1| - 1e-21 77.0 0.0 2.5e-21 75.8 0.0 1.6 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|435850378|ref|YP_007311964.1| - 3.8e-06 27.0 0.0 8.2e-06 25.9 0.0 1.7 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|435850378|ref|YP_007311964.1| - 0.046 13.5 0.0 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|435850378|ref|YP_007311964.1| - 0.089 12.9 0.1 0.32 11.2 0.1 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix domain DUF4627 PF15425.1 gi|435850379|ref|YP_007311965.1| - 0.026 14.0 0.1 0.042 13.3 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4627) Oxidored_q2 PF00420.19 gi|435850380|ref|YP_007311966.1| - 4.8e-05 22.8 0.5 6.3e-05 22.4 0.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Baculo_PEP_C PF04513.7 gi|435850380|ref|YP_007311966.1| - 0.0066 16.2 3.1 0.0087 15.8 2.1 1.1 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.6 gi|435850380|ref|YP_007311966.1| - 0.023 14.5 1.4 0.041 13.7 1.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Herpes_U26 PF07402.6 gi|435850380|ref|YP_007311966.1| - 0.024 13.9 0.4 0.029 13.6 0.3 1.1 1 0 0 1 1 1 0 Human herpesvirus U26 protein Allexi_40kDa PF05549.6 gi|435850380|ref|YP_007311966.1| - 0.11 11.8 0.1 0.13 11.5 0.1 1.0 1 0 0 1 1 1 0 Allexivirus 40kDa protein PrgI PF12666.2 gi|435850380|ref|YP_007311966.1| - 0.11 12.6 0.1 0.13 12.4 0.1 1.2 1 0 0 1 1 1 0 PrgI family protein CmcI PF04989.7 gi|435850380|ref|YP_007311966.1| - 0.11 11.7 0.3 0.16 11.2 0.2 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase BROMI PF14961.1 gi|435850381|ref|YP_007311967.1| - 0.0019 15.4 0.0 0.0026 14.9 0.0 1.1 1 0 0 1 1 1 1 Broad-minded protein DUF2031 PF09592.5 gi|435850381|ref|YP_007311967.1| - 0.053 12.6 3.3 0.11 11.5 2.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2031) NusB PF01029.13 gi|435850381|ref|YP_007311967.1| - 0.071 13.0 0.3 0.13 12.2 0.2 1.4 1 0 0 1 1 1 0 NusB family Ribosomal_S25 PF03297.10 gi|435850381|ref|YP_007311967.1| - 0.13 12.2 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 S25 ribosomal protein FixQ PF05545.6 gi|435850382|ref|YP_007311968.1| - 4.5 6.9 12.1 0.83 9.3 4.4 2.4 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Peptidase_M24 PF00557.19 gi|435850383|ref|YP_007311969.1| - 8.2e-46 156.1 0.1 1.4e-45 155.3 0.1 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.19 gi|435850384|ref|YP_007311970.1| - 8.9e-46 156.0 0.1 1e-45 155.8 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Glyco_tranf_2_2 PF10111.4 gi|435850385|ref|YP_007311971.1| - 0.1 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Capsid-VNN PF11729.3 gi|435850385|ref|YP_007311971.1| - 0.16 10.8 0.2 0.45 9.4 0.0 1.8 2 0 0 2 2 2 0 nodavirus capsid protein DUF1805 PF08827.6 gi|435850386|ref|YP_007311972.1| - 1e-25 89.2 0.2 1.5e-25 88.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) DUF1119 PF06550.6 gi|435850387|ref|YP_007311973.1| - 7.6e-110 366.4 26.5 8.9e-110 366.2 18.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) CMD PF02627.15 gi|435850388|ref|YP_007311974.1| - 5.9e-15 54.8 0.0 8.5e-15 54.3 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family CAP_N PF01213.14 gi|435850388|ref|YP_007311974.1| - 0.0015 17.9 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Adenylate cyclase associated (CAP) N terminal DnaB_2 PF07261.6 gi|435850388|ref|YP_007311974.1| - 0.01 15.4 1.0 1 8.9 0.7 2.3 1 1 0 1 1 1 0 Replication initiation and membrane attachment MCR_C PF04609.7 gi|435850389|ref|YP_007311975.1| - 5.6e-109 363.0 0.1 6.6e-109 362.8 0.0 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.4 gi|435850390|ref|YP_007311976.1| - 1.7e-55 187.1 1.0 1.9e-55 186.9 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) Corona_S2 PF01601.11 gi|435850390|ref|YP_007311976.1| - 0.008 14.3 0.0 0.0093 14.1 0.0 1.1 1 0 0 1 1 1 1 Coronavirus S2 glycoprotein Adeno_E4 PF05385.6 gi|435850390|ref|YP_007311976.1| - 0.12 12.2 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Mastadenovirus early E4 13 kDa protein Pox_A3L PF05288.6 gi|435850390|ref|YP_007311976.1| - 0.14 11.9 0.2 0.26 11.0 0.2 1.4 1 0 0 1 1 1 0 Poxvirus A3L Protein BcrAD_BadFG PF01869.15 gi|435850391|ref|YP_007311977.1| - 1.7e-56 191.5 4.4 2.4e-56 191.0 3.0 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Hydant_A_N PF05378.8 gi|435850391|ref|YP_007311977.1| - 0.026 14.0 2.7 0.044 13.2 0.4 2.2 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.1 gi|435850391|ref|YP_007311977.1| - 0.11 12.3 5.4 2.6 7.8 3.7 2.8 1 1 0 1 1 1 0 Cell division protein FtsA DUF2112 PF09885.4 gi|435850392|ref|YP_007311978.1| - 7.6e-68 226.6 0.2 8.7e-68 226.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.4 gi|435850393|ref|YP_007311979.1| - 3.1e-42 142.3 0.1 3.9e-42 141.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Pro_isomerase PF00160.16 gi|435850394|ref|YP_007311980.1| - 6.1e-07 29.7 0.3 0.3 11.2 0.0 4.8 3 2 0 3 3 3 3 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABC_tran PF00005.22 gi|435850395|ref|YP_007311981.1| - 5.5e-50 169.2 0.0 2.7e-24 86.0 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|435850395|ref|YP_007311981.1| - 3.2e-09 37.1 0.1 0.0037 17.2 0.0 3.9 3 1 0 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|435850395|ref|YP_007311981.1| - 7.2e-08 31.8 0.6 0.031 13.3 0.1 3.3 3 0 0 3 3 3 2 AAA ATPase domain SMC_N PF02463.14 gi|435850395|ref|YP_007311981.1| - 1.9e-07 30.5 1.7 0.018 14.2 0.1 3.2 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|435850395|ref|YP_007311981.1| - 3e-05 23.2 0.2 0.21 10.7 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|435850395|ref|YP_007311981.1| - 8e-05 22.4 0.0 1.9 8.4 0.0 3.8 2 1 1 3 3 3 2 Putative exonuclease SbcCD, C subunit PRK PF00485.13 gi|435850395|ref|YP_007311981.1| - 8.6e-05 22.1 0.1 0.19 11.2 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family UPF0079 PF02367.12 gi|435850395|ref|YP_007311981.1| - 0.0021 17.6 0.3 1.1 8.9 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|435850395|ref|YP_007311981.1| - 0.0036 16.8 0.1 1.4 8.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|435850395|ref|YP_007311981.1| - 0.0038 16.7 0.1 0.013 14.9 0.0 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_17 PF13207.1 gi|435850395|ref|YP_007311981.1| - 0.0039 18.0 1.3 1.8 9.4 0.4 3.0 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|435850395|ref|YP_007311981.1| - 0.0048 16.4 0.7 3.2 7.3 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|435850395|ref|YP_007311981.1| - 0.0057 15.5 0.9 0.68 8.7 0.1 2.5 2 0 0 2 2 2 1 NB-ARC domain AAA_13 PF13166.1 gi|435850395|ref|YP_007311981.1| - 0.0061 15.0 0.0 2.6 6.4 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|435850395|ref|YP_007311981.1| - 0.0073 16.6 2.0 0.37 11.1 0.3 2.9 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|435850395|ref|YP_007311981.1| - 0.0099 16.0 0.2 2.4 8.3 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|435850395|ref|YP_007311981.1| - 0.014 15.3 1.4 2 8.3 0.1 2.9 2 2 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|435850395|ref|YP_007311981.1| - 0.017 15.4 2.4 2.3 8.4 0.1 2.6 3 0 0 3 3 2 0 AAA domain AAA_19 PF13245.1 gi|435850395|ref|YP_007311981.1| - 0.05 13.3 0.1 16 5.3 0.0 2.7 2 0 0 2 2 2 0 Part of AAA domain Zeta_toxin PF06414.7 gi|435850395|ref|YP_007311981.1| - 0.077 12.0 0.0 0.89 8.6 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin Nup54 PF13874.1 gi|435850395|ref|YP_007311981.1| - 0.081 12.5 0.5 0.18 11.4 0.4 1.6 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 AAA_33 PF13671.1 gi|435850395|ref|YP_007311981.1| - 0.089 12.6 0.0 4.5 7.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain RYDR_ITPR PF01365.16 gi|435850395|ref|YP_007311981.1| - 0.089 12.0 0.2 0.15 11.2 0.1 1.3 1 0 0 1 1 1 0 RIH domain DUF87 PF01935.12 gi|435850395|ref|YP_007311981.1| - 0.33 10.7 3.4 2.8 7.6 0.1 2.8 3 0 0 3 3 2 0 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|435850395|ref|YP_007311981.1| - 2.2 7.6 4.6 8 5.8 0.0 3.3 4 0 0 4 4 4 0 AAA-like domain Hydrolase PF00702.21 gi|435850396|ref|YP_007311982.1| - 1e-14 55.4 0.0 1.3e-14 55.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|435850396|ref|YP_007311982.1| - 4.7e-12 46.4 0.3 7.6e-12 45.7 0.2 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|435850396|ref|YP_007311982.1| - 1.7e-06 27.8 0.1 0.0014 18.2 0.1 2.5 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|435850396|ref|YP_007311982.1| - 0.0015 18.4 0.0 0.07 13.0 0.0 2.6 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|435850396|ref|YP_007311982.1| - 0.0027 17.3 0.0 0.006 16.2 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.1 gi|435850396|ref|YP_007311982.1| - 0.0061 16.7 0.0 0.19 11.9 0.0 2.4 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Peptidase_M10 PF00413.19 gi|435850397|ref|YP_007311983.1| - 9.2e-13 48.1 0.0 1.6e-12 47.4 0.0 1.3 1 1 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.4 gi|435850397|ref|YP_007311983.1| - 0.0012 17.7 0.1 0.0016 17.3 0.1 1.1 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_3 PF13582.1 gi|435850397|ref|YP_007311983.1| - 0.002 18.6 0.1 0.0026 18.2 0.1 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M57 PF12388.3 gi|435850397|ref|YP_007311983.1| - 0.0033 16.7 0.0 0.0042 16.4 0.0 1.1 1 0 0 1 1 1 1 Dual-action HEIGH metallo-peptidase Metallopep PF12044.3 gi|435850397|ref|YP_007311983.1| - 0.0039 15.7 0.0 0.0057 15.1 0.0 1.1 1 0 0 1 1 1 1 Putative peptidase family Astacin PF01400.19 gi|435850397|ref|YP_007311983.1| - 0.009 15.4 0.0 0.02 14.3 0.0 1.5 2 0 0 2 2 2 1 Astacin (Peptidase family M12A) Reprolysin_2 PF13574.1 gi|435850397|ref|YP_007311983.1| - 0.017 15.1 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M54 PF07998.6 gi|435850397|ref|YP_007311983.1| - 0.043 13.5 0.0 0.068 12.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M54 Reprolysin_5 PF13688.1 gi|435850397|ref|YP_007311983.1| - 0.066 13.1 0.0 0.078 12.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 PgaD PF13994.1 gi|435850397|ref|YP_007311983.1| - 0.075 12.5 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 PgaD-like protein Reprolysin_4 PF13583.1 gi|435850397|ref|YP_007311983.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like COX16 PF14138.1 gi|435850397|ref|YP_007311983.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Cytochrome c oxidase assembly protein COX16 DNA_binding_1 PF01035.15 gi|435850398|ref|YP_007311984.1| - 9.4e-29 99.0 0.0 1.2e-28 98.7 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain AFOR_C PF01314.13 gi|435850399|ref|YP_007311985.1| - 4.6e-100 334.9 0.0 1.1e-99 333.6 0.0 1.6 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|435850399|ref|YP_007311985.1| - 1.7e-77 259.3 0.1 2.4e-77 258.8 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain eIF-5a PF01287.15 gi|435850400|ref|YP_007311986.1| - 1.1e-14 54.1 0.4 1.1e-14 54.1 0.3 1.5 2 0 0 2 2 2 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|435850400|ref|YP_007311986.1| - 0.00016 21.4 0.0 0.00029 20.6 0.0 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KH_5 PF13184.1 gi|435850400|ref|YP_007311986.1| - 0.024 14.4 0.1 0.043 13.6 0.1 1.4 1 0 0 1 1 1 0 NusA-like KH domain KOW PF00467.24 gi|435850400|ref|YP_007311986.1| - 0.083 12.6 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 KOW motif Arginase PF00491.16 gi|435850401|ref|YP_007311987.1| - 1.1e-77 261.0 0.0 1.3e-77 260.8 0.0 1.0 1 0 0 1 1 1 1 Arginase family DUF2387 PF09526.5 gi|435850402|ref|YP_007311988.1| - 0.087 12.7 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Ribosomal_S27e PF01667.12 gi|435850402|ref|YP_007311988.1| - 0.13 11.8 1.7 0.3 10.6 1.2 1.5 1 1 0 1 1 1 0 Ribosomal protein S27 RRM_DME PF15628.1 gi|435850402|ref|YP_007311988.1| - 0.14 11.8 0.2 0.76 9.5 0.0 2.3 2 1 0 2 2 2 0 RRM in Demeter zf-ribbon_3 PF13248.1 gi|435850402|ref|YP_007311988.1| - 0.78 9.0 3.7 13 5.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PCMT PF01135.14 gi|435850403|ref|YP_007311989.1| - 1.8e-71 240.0 0.0 2.1e-71 239.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|435850403|ref|YP_007311989.1| - 1.2e-08 34.6 0.0 1.6e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435850403|ref|YP_007311989.1| - 1.7e-06 28.5 0.0 2.6e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435850403|ref|YP_007311989.1| - 1.1e-05 24.9 0.0 1.7e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.12 gi|435850403|ref|YP_007311989.1| - 7.8e-05 21.7 0.0 0.00014 20.8 0.0 1.4 1 0 0 1 1 1 1 Fibrillarin Methyltransf_3 PF01596.12 gi|435850403|ref|YP_007311989.1| - 0.00019 20.5 0.0 0.00024 20.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.15 gi|435850403|ref|YP_007311989.1| - 0.00064 18.8 0.0 0.00088 18.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|435850403|ref|YP_007311989.1| - 0.0019 17.3 0.0 0.0025 16.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|435850403|ref|YP_007311989.1| - 0.0023 17.0 0.0 0.0035 16.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|435850403|ref|YP_007311989.1| - 0.0046 16.6 0.0 0.0075 16.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.7 gi|435850403|ref|YP_007311989.1| - 0.0051 16.3 0.0 0.0078 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_26 PF13659.1 gi|435850403|ref|YP_007311989.1| - 0.0082 16.1 0.0 0.018 15.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|435850403|ref|YP_007311989.1| - 0.009 15.5 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit DNase-RNase PF02577.9 gi|435850404|ref|YP_007311990.1| - 1e-38 131.6 0.2 1.2e-38 131.4 0.1 1.0 1 0 0 1 1 1 1 Bifunctional nuclease DUF1614 PF07758.6 gi|435850405|ref|YP_007311991.1| - 3.2e-51 173.5 16.0 5.1e-51 172.8 11.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) His_biosynth PF00977.16 gi|435850406|ref|YP_007311992.1| - 1.1e-88 296.3 0.6 1.3e-88 296.1 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|435850406|ref|YP_007311992.1| - 1e-06 28.0 0.1 0.0083 15.2 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|435850406|ref|YP_007311992.1| - 1.2e-06 27.5 0.0 4.3e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|435850406|ref|YP_007311992.1| - 1.4e-06 27.7 0.3 0.0046 16.1 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.16 gi|435850406|ref|YP_007311992.1| - 2.6e-05 23.3 0.1 0.032 13.1 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|435850406|ref|YP_007311992.1| - 0.00012 21.2 0.1 0.047 12.7 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|435850406|ref|YP_007311992.1| - 0.00022 20.5 0.6 0.00071 18.8 0.1 2.0 2 1 1 3 3 3 1 PcrB family IMPDH PF00478.20 gi|435850406|ref|YP_007311992.1| - 0.0018 17.2 0.2 0.7 8.7 0.0 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|435850406|ref|YP_007311992.1| - 0.0095 14.9 0.2 0.043 12.8 0.0 1.9 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator SBP_bac_3 PF00497.15 gi|435850406|ref|YP_007311992.1| - 0.028 13.6 0.0 0.053 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 MazG PF03819.12 gi|435850407|ref|YP_007311993.1| - 1.8e-17 63.0 0.0 2.5e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|435850407|ref|YP_007311993.1| - 0.00018 21.7 0.2 0.00022 21.4 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Cation_efflux PF01545.16 gi|435850408|ref|YP_007311994.1| - 4.7e-67 226.0 5.1 5.8e-67 225.7 3.5 1.0 1 0 0 1 1 1 1 Cation efflux family DUF3754 PF12576.3 gi|435850408|ref|YP_007311994.1| - 0.1 12.2 0.1 0.1 12.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3754) DUF973 PF06157.6 gi|435850408|ref|YP_007311994.1| - 1.6 7.6 11.3 2.2 7.1 5.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF973) CARDB PF07705.6 gi|435850409|ref|YP_007311995.1| - 0.0058 16.6 3.8 0.061 13.3 0.2 2.6 2 0 0 2 2 2 2 CARDB DUF2141 PF09912.4 gi|435850409|ref|YP_007311995.1| - 0.031 13.9 0.0 0.32 10.6 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2141) Viral_Beta_CD PF04530.7 gi|435850410|ref|YP_007311996.1| - 0.014 15.5 0.8 2.9 8.0 0.0 2.0 1 1 1 2 2 2 0 Viral Beta C/D like family DUF4064 PF13273.1 gi|435850410|ref|YP_007311996.1| - 0.06 13.4 0.3 1.6 8.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Peptidase_U32 PF01136.14 gi|435850411|ref|YP_007311997.1| - 5.7e-112 372.3 0.1 5.4e-82 274.2 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|435850411|ref|YP_007311997.1| - 4e-27 94.6 0.0 7.1e-27 93.8 0.0 1.4 1 0 0 1 1 1 1 Collagenase PEP_mutase PF13714.1 gi|435850411|ref|YP_007311997.1| - 0.00018 20.8 0.4 0.0025 17.0 0.3 2.7 3 1 0 3 3 3 1 Phosphoenolpyruvate phosphomutase Radical_SAM PF04055.16 gi|435850411|ref|YP_007311997.1| - 0.083 13.0 0.3 1.3 9.1 0.0 2.9 3 0 0 3 3 3 0 Radical SAM superfamily DeoC PF01791.4 gi|435850411|ref|YP_007311997.1| - 0.097 11.9 0.2 0.24 10.6 0.2 1.6 1 0 0 1 1 1 0 DeoC/LacD family aldolase Glyco_hydro_97 PF10566.4 gi|435850411|ref|YP_007311997.1| - 0.22 10.5 0.1 0.39 9.7 0.0 1.3 1 0 0 1 1 1 0 Glycoside hydrolase 97 Nuc_deoxyrib_tr PF05014.10 gi|435850412|ref|YP_007311998.1| - 3.5e-08 33.3 0.0 3.9e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase BofA PF07441.6 gi|435850413|ref|YP_007311999.1| - 1e-06 28.6 18.5 1.3e-06 28.3 12.8 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Apq12 PF12716.2 gi|435850413|ref|YP_007311999.1| - 0.0018 17.9 10.1 0.0018 17.9 7.0 2.1 1 1 1 2 2 2 1 Nuclear pore assembly and biogenesis YqhR PF11085.3 gi|435850413|ref|YP_007311999.1| - 4.3 6.8 14.3 0.17 11.4 5.1 1.8 1 1 1 2 2 2 0 Conserved membrane protein YqhR Tweety PF04906.8 gi|435850413|ref|YP_007311999.1| - 4.6 5.5 10.2 4.6 5.5 7.1 1.1 1 0 0 1 1 1 0 Tweety Phage_holin_3 PF05106.7 gi|435850413|ref|YP_007311999.1| - 5.3 7.1 7.1 6.1 6.9 4.9 1.1 1 0 0 1 1 1 0 Phage holin family (Lysis protein S) Methyltransf_11 PF08241.7 gi|435850414|ref|YP_007312000.1| - 2.7e-20 72.6 0.0 4.1e-20 72.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435850414|ref|YP_007312000.1| - 7.5e-19 67.9 0.1 5.8e-18 65.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|435850414|ref|YP_007312000.1| - 3.2e-16 59.4 0.0 4.1e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|435850414|ref|YP_007312000.1| - 1.2e-14 54.5 0.0 2.1e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435850414|ref|YP_007312000.1| - 1.1e-12 47.8 0.0 1.5e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435850414|ref|YP_007312000.1| - 7.5e-09 36.1 0.0 1.1e-08 35.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|435850414|ref|YP_007312000.1| - 1.7e-08 33.8 0.0 2.4e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|435850414|ref|YP_007312000.1| - 5.2e-08 32.2 0.0 6.6e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|435850414|ref|YP_007312000.1| - 7.2e-07 28.1 0.0 1.1e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_26 PF13659.1 gi|435850414|ref|YP_007312000.1| - 3e-06 27.2 0.0 5e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|435850414|ref|YP_007312000.1| - 2.8e-05 23.5 0.0 3.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.6 gi|435850414|ref|YP_007312000.1| - 9.1e-05 21.9 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.9 gi|435850414|ref|YP_007312000.1| - 0.00032 20.0 0.0 0.00045 19.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|435850414|ref|YP_007312000.1| - 0.00065 18.9 0.0 0.00091 18.4 0.0 1.3 1 1 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_8 PF05148.10 gi|435850414|ref|YP_007312000.1| - 0.007 16.0 0.0 0.013 15.1 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase PrmA PF06325.8 gi|435850414|ref|YP_007312000.1| - 0.024 13.7 0.0 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|435850414|ref|YP_007312000.1| - 0.028 13.4 0.0 0.04 12.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) PCMT PF01135.14 gi|435850414|ref|YP_007312000.1| - 0.056 12.9 0.0 0.091 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CheR PF01739.13 gi|435850414|ref|YP_007312000.1| - 0.097 11.9 0.0 1.6 7.9 0.0 2.5 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain tRNA-synt_1f PF01921.13 gi|435850415|ref|YP_007312001.1| - 3.3e-134 447.1 0.0 9.6e-134 445.5 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|435850415|ref|YP_007312001.1| - 6.6e-08 31.6 0.2 0.0004 19.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|435850415|ref|YP_007312001.1| - 2e-05 23.9 0.0 0.07 12.2 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.20 gi|435850415|ref|YP_007312001.1| - 0.015 14.4 0.0 4.4 6.3 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) zf-Paramyx-P PF13008.2 gi|435850415|ref|YP_007312001.1| - 4.3 6.6 7.2 2.5 7.3 0.1 3.0 3 0 0 3 3 3 0 Zinc-binding domain of Paramyxoviridae V protein Rhabdo_NV PF02484.10 gi|435850416|ref|YP_007312002.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Rhabdovirus Non-virion protein TPD PF14811.1 gi|435850417|ref|YP_007312003.1| - 1e-43 148.1 0.5 1.5e-43 147.6 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function TPD sequence-motif HhH-GPD PF00730.20 gi|435850418|ref|YP_007312004.1| - 1e-13 51.5 0.0 1.4e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|435850418|ref|YP_007312004.1| - 0.0015 18.6 0.0 0.0022 18.1 0.0 1.5 1 1 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|435850418|ref|YP_007312004.1| - 0.0053 16.4 0.0 0.045 13.4 0.0 2.4 3 0 0 3 3 3 1 Helix-hairpin-helix motif Pribosyltran_N PF13793.1 gi|435850419|ref|YP_007312005.1| - 6.1e-28 96.8 0.2 2e-25 88.8 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|435850419|ref|YP_007312005.1| - 3.8e-16 58.9 0.1 8.9e-16 57.7 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|435850419|ref|YP_007312005.1| - 1.3e-07 31.5 0.4 2.4e-07 30.6 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|435850419|ref|YP_007312005.1| - 7.6e-07 28.5 0.1 1.8e-06 27.3 0.0 1.7 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|435850419|ref|YP_007312005.1| - 0.0023 17.2 0.1 0.0045 16.3 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase DUF1995 PF09353.5 gi|435850419|ref|YP_007312005.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1995) PAAR_motif PF05488.8 gi|435850419|ref|YP_007312005.1| - 0.055 13.4 0.1 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 PAAR motif MoaC PF01967.16 gi|435850420|ref|YP_007312006.1| - 2.8e-48 163.0 1.2 3.2e-48 162.8 0.8 1.0 1 0 0 1 1 1 1 MoaC family Arch_ATPase PF01637.13 gi|435850421|ref|YP_007312007.1| - 0.00012 21.8 2.0 0.00013 21.7 1.4 1.0 1 0 0 1 1 1 1 Archaeal ATPase BssS PF13991.1 gi|435850421|ref|YP_007312007.1| - 0.043 13.5 0.1 0.062 13.0 0.1 1.3 1 0 0 1 1 1 0 BssS protein family Ribosomal_L12 PF00542.14 gi|435850421|ref|YP_007312007.1| - 0.057 13.4 2.9 0.079 12.9 2.0 1.3 1 1 0 1 1 1 0 Ribosomal protein L7/L12 C-terminal domain DUF3750 PF12570.3 gi|435850421|ref|YP_007312007.1| - 0.11 12.7 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3750) MtrB PF05440.7 gi|435850421|ref|YP_007312007.1| - 0.14 12.1 0.5 0.15 12.0 0.3 1.1 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B Phage_connect_1 PF05135.8 gi|435850421|ref|YP_007312007.1| - 0.29 11.3 2.0 0.28 11.3 1.4 1.1 1 0 0 1 1 1 0 Phage gp6-like head-tail connector protein Translin PF01997.11 gi|435850421|ref|YP_007312007.1| - 0.45 10.0 2.9 0.48 9.9 2.0 1.0 1 0 0 1 1 1 0 Translin family Carb_kinase PF01256.12 gi|435850422|ref|YP_007312008.1| - 2.1e-52 177.8 3.4 2.9e-52 177.3 2.3 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|435850422|ref|YP_007312008.1| - 2.3e-40 137.9 4.1 3.5e-40 137.3 0.1 2.4 2 1 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|435850422|ref|YP_007312008.1| - 7.8e-08 31.7 0.5 1.7e-07 30.6 0.3 1.6 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family DUF4257 PF14074.1 gi|435850422|ref|YP_007312008.1| - 0.054 13.1 0.1 0.15 11.7 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4257) TrkA_N PF02254.13 gi|435850423|ref|YP_007312009.1| - 3.7e-24 84.9 0.1 7.1e-24 84.0 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.15 gi|435850423|ref|YP_007312009.1| - 1.5e-14 53.8 0.4 3.2e-14 52.7 0.1 1.7 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|435850423|ref|YP_007312009.1| - 1.1e-10 40.9 0.7 1.7e-09 37.2 0.2 2.5 2 0 0 2 2 2 1 DHHA1 domain F420_oxidored PF03807.12 gi|435850423|ref|YP_007312009.1| - 0.00061 20.1 0.0 0.0045 17.4 0.0 2.5 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Methyltransf_18 PF12847.2 gi|435850423|ref|YP_007312009.1| - 0.011 16.3 0.0 0.033 14.7 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain NAD_binding_10 PF13460.1 gi|435850423|ref|YP_007312009.1| - 0.021 14.8 0.0 0.07 13.1 0.0 1.8 2 0 0 2 2 2 0 NADH(P)-binding NAD_binding_2 PF03446.10 gi|435850423|ref|YP_007312009.1| - 0.03 14.1 0.0 0.082 12.7 0.0 1.7 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|435850423|ref|YP_007312009.1| - 0.037 14.1 0.0 0.2 11.7 0.0 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|435850423|ref|YP_007312009.1| - 0.04 13.6 0.0 0.11 12.1 0.0 1.8 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|435850423|ref|YP_007312009.1| - 0.05 12.9 0.0 0.086 12.2 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.16 gi|435850423|ref|YP_007312009.1| - 0.062 12.7 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ApbA PF02558.11 gi|435850423|ref|YP_007312009.1| - 0.073 12.5 0.0 0.17 11.3 0.0 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|435850423|ref|YP_007312009.1| - 0.15 11.0 0.0 0.32 9.9 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase CxxCxxCC PF03692.10 gi|435850424|ref|YP_007312010.1| - 1.5e-09 38.2 4.7 6e-09 36.2 3.3 1.9 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Aconitase PF00330.15 gi|435850425|ref|YP_007312011.1| - 5.2e-83 279.0 0.1 2.7e-58 197.5 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) PRA-PH PF01503.12 gi|435850426|ref|YP_007312012.1| - 1.5e-08 34.7 0.2 1.9e-08 34.4 0.1 1.3 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|435850426|ref|YP_007312012.1| - 6.4e-05 22.8 1.5 7.4e-05 22.6 0.7 1.4 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain HrcA_DNA-bdg PF03444.10 gi|435850427|ref|YP_007312013.1| - 1.2e-36 123.9 0.3 3.2e-36 122.6 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|435850427|ref|YP_007312013.1| - 4.6e-18 64.7 0.3 2e-08 33.8 0.0 2.7 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|435850427|ref|YP_007312013.1| - 5.1e-08 32.9 0.0 1.4e-07 31.4 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|435850427|ref|YP_007312013.1| - 1.6e-05 24.4 0.1 3.8e-05 23.2 0.1 1.7 1 0 0 1 1 1 1 HTH domain Aconitase_2_N PF06434.8 gi|435850427|ref|YP_007312013.1| - 0.0014 18.0 0.1 0.0024 17.3 0.0 1.4 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Sigma70_r4_2 PF08281.7 gi|435850427|ref|YP_007312013.1| - 0.013 14.9 0.2 0.097 12.1 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 TrmB PF01978.14 gi|435850427|ref|YP_007312013.1| - 0.024 14.3 0.0 0.053 13.2 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|435850427|ref|YP_007312013.1| - 0.026 13.9 0.5 0.093 12.1 0.3 2.1 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NOG1 PF06858.9 gi|435850428|ref|YP_007312014.1| - 2.2e-23 81.8 0.2 4.2e-23 80.9 0.2 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|435850428|ref|YP_007312014.1| - 1.5e-19 70.0 0.0 2.7e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|435850428|ref|YP_007312014.1| - 5.4e-10 38.7 0.0 9.1e-10 38.0 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|435850428|ref|YP_007312014.1| - 1.5e-07 31.9 0.0 2.7e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|435850428|ref|YP_007312014.1| - 0.00031 20.5 0.3 0.043 13.6 0.0 2.7 2 1 1 3 3 3 1 Dynamin family GTP_EFTU PF00009.22 gi|435850428|ref|YP_007312014.1| - 0.00074 19.0 0.1 0.0049 16.3 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|435850428|ref|YP_007312014.1| - 0.0011 18.2 0.0 0.014 14.6 0.0 2.3 1 1 0 1 1 1 1 ADP-ribosylation factor family AIG1 PF04548.11 gi|435850428|ref|YP_007312014.1| - 0.013 14.6 0.1 0.022 13.8 0.1 1.5 1 1 0 1 1 1 0 AIG1 family ATP_bind_1 PF03029.12 gi|435850428|ref|YP_007312014.1| - 0.053 13.0 0.6 1 8.8 0.1 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Ras PF00071.17 gi|435850428|ref|YP_007312014.1| - 0.055 12.8 0.1 0.46 9.8 0.0 2.4 1 1 0 1 1 1 0 Ras family DUF3734 PF12536.3 gi|435850428|ref|YP_007312014.1| - 0.1 12.7 0.0 0.25 11.4 0.0 1.8 1 1 0 1 1 1 0 Patatin phospholipase Aminotran_1_2 PF00155.16 gi|435850429|ref|YP_007312015.1| - 3.9e-66 223.4 0.0 4.7e-66 223.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|435850429|ref|YP_007312015.1| - 1.7e-11 43.5 0.0 3e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|435850429|ref|YP_007312015.1| - 7.6e-10 38.3 0.0 1.2e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|435850429|ref|YP_007312015.1| - 5.7e-07 28.1 0.1 8.7e-07 27.5 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|435850429|ref|YP_007312015.1| - 1.9e-05 23.9 0.1 4.6e-05 22.6 0.1 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase SIS PF01380.17 gi|435850430|ref|YP_007312016.1| - 1.5e-16 60.1 0.3 2.7e-16 59.3 0.2 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|435850430|ref|YP_007312016.1| - 1e-06 28.5 4.5 0.0052 16.5 0.3 2.2 1 1 1 2 2 2 2 SIS domain THF_DHG_CYH_C PF02882.14 gi|435850430|ref|YP_007312016.1| - 0.0078 15.3 1.0 0.011 14.7 0.7 1.4 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Viral_Rep PF02407.11 gi|435850430|ref|YP_007312016.1| - 0.15 12.1 0.2 0.47 10.4 0.1 1.8 2 0 0 2 2 2 0 Putative viral replication protein DUF2073 PF09846.4 gi|435850432|ref|YP_007312018.1| - 2.2e-43 146.1 0.4 2.8e-43 145.8 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) GTP_EFTU PF00009.22 gi|435850433|ref|YP_007312019.1| - 1.4e-17 63.7 0.7 1.3e-07 31.1 0.0 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|435850433|ref|YP_007312019.1| - 7.7e-16 58.0 0.0 1.1e-15 57.6 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase Arf PF00025.16 gi|435850433|ref|YP_007312019.1| - 1.1e-06 27.9 0.0 0.018 14.2 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family SRPRB PF09439.5 gi|435850433|ref|YP_007312019.1| - 6.3e-05 22.2 0.0 0.029 13.5 0.0 2.4 2 1 0 2 2 2 2 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|435850433|ref|YP_007312019.1| - 6.7e-05 22.2 0.1 0.00092 18.5 0.1 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B Septin PF00735.13 gi|435850433|ref|YP_007312019.1| - 0.00056 19.0 0.0 0.00077 18.5 0.0 1.2 1 0 0 1 1 1 1 Septin AAA_17 PF13207.1 gi|435850433|ref|YP_007312019.1| - 0.00067 20.4 0.1 0.0014 19.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain Ras PF00071.17 gi|435850433|ref|YP_007312019.1| - 0.0016 17.8 0.0 0.73 9.2 0.0 2.6 2 1 0 2 2 2 1 Ras family Miro PF08477.8 gi|435850433|ref|YP_007312019.1| - 0.002 18.5 0.0 0.0085 16.5 0.0 1.9 1 1 0 1 1 1 1 Miro-like protein AAA PF00004.24 gi|435850433|ref|YP_007312019.1| - 0.0025 18.0 0.1 0.0059 16.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|435850433|ref|YP_007312019.1| - 0.0031 17.2 0.0 0.0091 15.7 0.0 1.8 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.1 gi|435850433|ref|YP_007312019.1| - 0.0036 17.3 0.0 0.0072 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|435850433|ref|YP_007312019.1| - 0.0037 16.4 0.0 0.0068 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|435850433|ref|YP_007312019.1| - 0.0043 16.7 0.2 0.014 15.1 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain AAA_18 PF13238.1 gi|435850433|ref|YP_007312019.1| - 0.0049 17.1 0.0 0.0092 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain Parvo_NS1 PF01057.12 gi|435850433|ref|YP_007312019.1| - 0.0056 15.5 0.0 0.008 15.0 0.0 1.2 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_22 PF13401.1 gi|435850433|ref|YP_007312019.1| - 0.006 16.7 0.1 0.014 15.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|435850433|ref|YP_007312019.1| - 0.008 16.4 0.0 0.015 15.5 0.0 1.4 1 1 0 1 1 1 1 ABC transporter Arch_ATPase PF01637.13 gi|435850433|ref|YP_007312019.1| - 0.0085 15.8 0.0 0.018 14.7 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase PPV_E1_C PF00519.12 gi|435850433|ref|YP_007312019.1| - 0.019 13.5 0.0 0.028 13.0 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA_28 PF13521.1 gi|435850433|ref|YP_007312019.1| - 0.027 14.4 0.1 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|435850433|ref|YP_007312019.1| - 0.031 14.4 0.0 0.065 13.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ArgK PF03308.11 gi|435850433|ref|YP_007312019.1| - 0.04 12.6 0.0 0.72 8.5 0.0 2.4 3 0 0 3 3 3 0 ArgK protein Dynamin_N PF00350.18 gi|435850433|ref|YP_007312019.1| - 0.044 13.6 0.0 6.6 6.5 0.0 2.3 1 1 0 2 2 2 0 Dynamin family AAA_24 PF13479.1 gi|435850433|ref|YP_007312019.1| - 0.052 13.1 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|435850433|ref|YP_007312019.1| - 0.078 12.4 0.1 0.34 10.3 0.0 2.1 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|435850433|ref|YP_007312019.1| - 0.092 12.6 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|435850433|ref|YP_007312019.1| - 0.093 11.8 0.0 0.14 11.2 0.0 1.4 1 1 0 1 1 1 0 AIG1 family Guanylate_kin PF00625.16 gi|435850433|ref|YP_007312019.1| - 0.094 12.1 0.0 0.16 11.4 0.0 1.5 1 1 0 1 1 1 0 Guanylate kinase NACHT PF05729.7 gi|435850433|ref|YP_007312019.1| - 0.1 12.2 0.0 0.38 10.4 0.0 1.8 2 1 0 2 2 2 0 NACHT domain AAA_10 PF12846.2 gi|435850433|ref|YP_007312019.1| - 0.12 11.7 0.0 0.26 10.6 0.0 1.7 1 1 0 1 1 1 0 AAA-like domain NB-ARC PF00931.17 gi|435850433|ref|YP_007312019.1| - 0.14 10.9 0.0 0.21 10.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PhoU PF01895.14 gi|435850434|ref|YP_007312020.1| - 1.8e-25 89.1 13.3 1.6e-14 54.0 0.7 2.6 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|435850434|ref|YP_007312020.1| - 5.7e-12 45.0 0.1 1.5e-11 43.7 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ArdA PF07275.6 gi|435850434|ref|YP_007312020.1| - 0.013 15.7 1.2 0.024 14.8 0.8 1.4 1 0 0 1 1 1 0 Antirestriction protein (ArdA) PspA_IM30 PF04012.7 gi|435850434|ref|YP_007312020.1| - 0.015 14.6 1.2 3.7 6.8 0.7 2.4 2 0 0 2 2 2 0 PspA/IM30 family Gp-FAR-1 PF05823.7 gi|435850434|ref|YP_007312020.1| - 0.078 12.9 1.8 0.11 12.4 0.4 1.9 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Lactamase_B_3 PF13483.1 gi|435850435|ref|YP_007312021.1| - 3.9e-21 75.4 0.0 5.1e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|435850435|ref|YP_007312021.1| - 3.9e-05 23.3 0.0 4.8e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Rpr2 PF04032.11 gi|435850436|ref|YP_007312022.1| - 8.1e-20 70.4 0.2 1.1e-19 70.1 0.1 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain NMD3 PF04981.8 gi|435850436|ref|YP_007312022.1| - 0.003 16.7 0.6 0.007 15.5 0.4 1.5 1 1 0 1 1 1 1 NMD3 family DUF2863 PF11062.3 gi|435850436|ref|YP_007312022.1| - 0.034 12.2 0.0 0.04 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) IBR PF01485.16 gi|435850436|ref|YP_007312022.1| - 0.063 13.1 0.1 0.096 12.5 0.1 1.3 1 0 0 1 1 1 0 IBR domain DZR PF12773.2 gi|435850436|ref|YP_007312022.1| - 0.17 11.7 1.7 0.56 10.0 1.2 1.8 1 1 0 1 1 1 0 Double zinc ribbon Viral_NABP PF05515.6 gi|435850436|ref|YP_007312022.1| - 0.17 12.1 3.0 0.24 11.6 2.1 1.3 1 1 0 1 1 1 0 Viral nucleic acid binding zf-ribbon_3 PF13248.1 gi|435850436|ref|YP_007312022.1| - 0.28 10.4 3.2 2.7 7.3 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|435850436|ref|YP_007312022.1| - 0.47 10.0 3.7 2.6 7.6 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.1 gi|435850436|ref|YP_007312022.1| - 0.79 9.5 3.7 0.74 9.6 0.2 2.2 2 0 0 2 2 2 0 YhfH-like protein P12 PF12669.2 gi|435850437|ref|YP_007312023.1| - 0.031 14.4 2.9 0.031 14.4 2.0 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family TrmB PF01978.14 gi|435850438|ref|YP_007312024.1| - 1.4e-06 27.8 0.2 1.9e-06 27.4 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|435850438|ref|YP_007312024.1| - 1.8e-05 24.4 0.2 2.1e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|435850438|ref|YP_007312024.1| - 0.00023 21.4 0.0 0.00029 21.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|435850438|ref|YP_007312024.1| - 0.00025 20.6 0.1 0.00038 20.1 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|435850438|ref|YP_007312024.1| - 0.00096 19.0 0.1 0.0017 18.2 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.12 gi|435850438|ref|YP_007312024.1| - 0.0013 18.2 0.3 0.0014 18.0 0.2 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|435850438|ref|YP_007312024.1| - 0.0018 17.8 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|435850438|ref|YP_007312024.1| - 0.0053 16.8 0.1 0.0064 16.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HemN_C PF06969.11 gi|435850438|ref|YP_007312024.1| - 0.028 14.4 0.0 0.036 14.1 0.0 1.2 1 0 0 1 1 1 0 HemN C-terminal domain DUF4423 PF14394.1 gi|435850438|ref|YP_007312024.1| - 0.031 13.8 0.2 0.034 13.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Rio2_N PF09202.6 gi|435850438|ref|YP_007312024.1| - 0.037 14.1 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal HTH_20 PF12840.2 gi|435850438|ref|YP_007312024.1| - 0.048 13.4 0.0 0.067 13.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2067 PF09840.4 gi|435850438|ref|YP_007312024.1| - 0.071 12.6 0.6 0.13 11.7 0.3 1.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) DUF2250 PF10007.4 gi|435850438|ref|YP_007312024.1| - 0.097 12.5 0.3 0.15 11.9 0.2 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Glycos_transf_2 PF00535.21 gi|435850439|ref|YP_007312025.1| - 4.3e-22 78.5 0.0 5.8e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|435850439|ref|YP_007312025.1| - 1.7e-06 27.9 0.0 4.6e-06 26.5 0.0 1.7 1 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|435850439|ref|YP_007312025.1| - 0.02 14.1 0.0 0.034 13.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|435850439|ref|YP_007312025.1| - 0.025 14.8 0.0 0.05 13.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|435850440|ref|YP_007312026.1| - 1.5e-35 122.1 0.1 2e-35 121.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|435850440|ref|YP_007312026.1| - 4.3e-18 65.6 0.0 7.9e-18 64.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|435850440|ref|YP_007312026.1| - 3e-17 63.0 0.0 7.9e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|435850440|ref|YP_007312026.1| - 7.3e-11 42.4 0.0 1.3e-10 41.6 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|435850440|ref|YP_007312026.1| - 9.6e-07 28.9 0.0 1.9e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.14 gi|435850440|ref|YP_007312026.1| - 8.2e-05 21.5 0.0 0.00013 20.8 0.0 1.2 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_1 PF00534.15 gi|435850441|ref|YP_007312027.1| - 5.6e-30 104.0 0.0 9.8e-30 103.2 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|435850441|ref|YP_007312027.1| - 1.9e-12 47.4 0.0 3.1e-11 43.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Epimerase_2 PF02350.14 gi|435850441|ref|YP_007312027.1| - 0.00029 19.7 0.0 0.0035 16.1 0.0 2.1 2 0 0 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_1_2 PF13524.1 gi|435850441|ref|YP_007312027.1| - 0.02 15.1 0.0 0.062 13.5 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glyco_trans_1_3 PF13528.1 gi|435850441|ref|YP_007312027.1| - 0.056 12.6 0.0 0.13 11.4 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family 1 STT3 PF02516.9 gi|435850442|ref|YP_007312028.1| - 2.3e-28 99.4 41.2 3.8e-28 98.7 28.6 1.3 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|435850442|ref|YP_007312028.1| - 0.0002 21.2 7.7 0.0002 21.2 5.3 4.4 3 1 1 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase KaiC PF06745.8 gi|435850443|ref|YP_007312029.1| - 3.3e-72 242.2 0.7 3.8e-72 242.0 0.5 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|435850443|ref|YP_007312029.1| - 2.5e-07 29.4 0.1 3.1e-07 29.0 0.1 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|435850443|ref|YP_007312029.1| - 1.9e-06 27.4 0.0 2.6e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|435850443|ref|YP_007312029.1| - 0.012 14.5 0.0 0.27 10.0 0.0 2.1 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain ATP-synt_ab PF00006.20 gi|435850443|ref|YP_007312029.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF4024 PF13216.1 gi|435850444|ref|YP_007312030.1| - 0.05 13.4 2.0 0.061 13.1 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4024) DUF2985 PF11204.3 gi|435850444|ref|YP_007312030.1| - 0.063 13.0 0.1 0.063 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2985) S-layer PF07752.6 gi|435850445|ref|YP_007312031.1| - 2.3e-141 469.4 27.9 5.2e-72 242.1 7.6 2.0 2 0 0 2 2 2 2 S-layer protein DUF961 PF06125.6 gi|435850445|ref|YP_007312031.1| - 0.034 14.3 0.1 13 6.0 0.0 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF961) DNA_pol_B PF00136.16 gi|435850447|ref|YP_007312033.1| - 4.6e-116 388.3 0.0 6.2e-116 387.9 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|435850447|ref|YP_007312033.1| - 2.2e-58 197.6 0.0 4.1e-58 196.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|435850447|ref|YP_007312033.1| - 0.00011 22.0 0.0 0.00024 20.9 0.0 1.5 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|435850447|ref|YP_007312033.1| - 0.0045 16.5 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB PhoU PF01895.14 gi|435850448|ref|YP_007312034.1| - 1.2e-38 131.4 13.0 2.6e-22 79.0 2.4 2.1 2 0 0 2 2 2 2 PhoU domain DUF1664 PF07889.7 gi|435850448|ref|YP_007312034.1| - 0.22 11.3 2.4 4.1 7.2 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) ABC_tran PF00005.22 gi|435850449|ref|YP_007312035.1| - 1.1e-30 106.7 0.0 1.5e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435850449|ref|YP_007312035.1| - 2e-14 54.2 0.0 2.3e-07 31.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|435850449|ref|YP_007312035.1| - 3.3e-08 33.0 0.1 3.1e-06 26.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|435850449|ref|YP_007312035.1| - 6.1e-05 22.4 0.0 0.00018 20.9 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|435850449|ref|YP_007312035.1| - 8.8e-05 21.7 0.2 0.042 12.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|435850449|ref|YP_007312035.1| - 0.00018 21.6 0.0 0.00082 19.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|435850449|ref|YP_007312035.1| - 0.00019 21.8 0.0 0.00049 20.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|435850449|ref|YP_007312035.1| - 0.0005 19.2 0.0 0.00097 18.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|435850449|ref|YP_007312035.1| - 0.0013 18.7 0.1 0.01 15.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.1 gi|435850449|ref|YP_007312035.1| - 0.0047 15.4 0.1 0.77 8.1 0.1 2.1 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|435850449|ref|YP_007312035.1| - 0.0059 16.3 0.0 0.68 9.7 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|435850449|ref|YP_007312035.1| - 0.012 15.4 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|435850449|ref|YP_007312035.1| - 0.014 14.8 0.0 0.033 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|435850449|ref|YP_007312035.1| - 0.015 16.0 0.0 0.037 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|435850449|ref|YP_007312035.1| - 0.019 14.4 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain Arch_ATPase PF01637.13 gi|435850449|ref|YP_007312035.1| - 0.024 14.3 0.3 0.32 10.6 0.2 2.1 1 1 0 1 1 1 0 Archaeal ATPase Rad17 PF03215.10 gi|435850449|ref|YP_007312035.1| - 0.024 13.3 0.0 0.034 12.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_18 PF13238.1 gi|435850449|ref|YP_007312035.1| - 0.029 14.6 0.0 0.066 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|435850449|ref|YP_007312035.1| - 0.035 14.2 0.1 0.24 11.5 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|435850449|ref|YP_007312035.1| - 0.077 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|435850449|ref|YP_007312035.1| - 0.08 12.8 0.0 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|435850449|ref|YP_007312035.1| - 0.097 12.8 0.0 0.42 10.8 0.0 2.0 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.7 gi|435850449|ref|YP_007312035.1| - 0.11 12.1 0.0 0.3 10.7 0.0 1.7 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|435850449|ref|YP_007312035.1| - 0.11 12.4 0.1 0.32 10.9 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase BPD_transp_1 PF00528.17 gi|435850450|ref|YP_007312036.1| - 5.5e-26 91.2 17.4 5.5e-26 91.2 12.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|435850451|ref|YP_007312037.1| - 9.4e-21 74.1 15.4 9.4e-21 74.1 10.7 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|435850452|ref|YP_007312038.1| - 2.4e-45 155.1 3.3 4.7e-45 154.2 2.3 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|435850452|ref|YP_007312038.1| - 3.1e-20 71.9 0.1 3.9e-20 71.6 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|435850452|ref|YP_007312038.1| - 1.5e-07 31.2 0.0 3e-07 30.3 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|435850452|ref|YP_007312038.1| - 0.037 13.3 0.0 0.072 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF4097 PF13349.1 gi|435850452|ref|YP_007312038.1| - 1.5 8.3 5.3 0.5 9.9 0.2 2.3 2 1 0 3 3 3 0 Domain of unknown function (DUF4097) Amidohydro_4 PF13147.1 gi|435850453|ref|YP_007312039.1| - 4.3e-28 99.1 0.2 6e-28 98.6 0.1 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|435850453|ref|YP_007312039.1| - 6.4e-20 72.0 0.1 2.2e-19 70.3 0.1 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|435850453|ref|YP_007312039.1| - 7.7e-11 41.6 1.5 2.4e-10 40.0 1.0 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|435850453|ref|YP_007312039.1| - 3.9e-08 32.9 0.1 1.5e-05 24.3 0.0 2.4 3 0 0 3 3 3 2 Amidohydrolase family DHOase PF12890.2 gi|435850453|ref|YP_007312039.1| - 0.0055 16.3 0.0 0.012 15.2 0.0 1.6 1 1 0 1 1 1 1 Dihydro-orotase-like KaiC PF06745.8 gi|435850454|ref|YP_007312040.1| - 5.9e-43 146.5 0.0 1.4e-42 145.3 0.0 1.6 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|435850454|ref|YP_007312040.1| - 2.4e-13 49.9 0.0 4e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|435850454|ref|YP_007312040.1| - 1.2e-07 30.9 0.0 1.8e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain RecA PF00154.16 gi|435850454|ref|YP_007312040.1| - 7.3e-06 25.2 0.0 9.3e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_14 PF13173.1 gi|435850454|ref|YP_007312040.1| - 2e-05 24.4 0.0 0.0001 22.1 0.0 2.3 2 1 1 3 3 3 1 AAA domain GvpD PF07088.6 gi|435850454|ref|YP_007312040.1| - 2.1e-05 23.0 0.1 0.0045 15.3 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_17 PF13207.1 gi|435850454|ref|YP_007312040.1| - 0.00017 22.4 0.3 0.00038 21.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|435850454|ref|YP_007312040.1| - 0.00018 21.2 0.1 0.00046 19.8 0.0 1.6 1 1 0 1 1 1 1 NACHT domain PPV_E1_C PF00519.12 gi|435850454|ref|YP_007312040.1| - 0.00022 19.9 0.1 0.0027 16.3 0.0 2.0 2 0 0 2 2 2 1 Papillomavirus helicase AAA_19 PF13245.1 gi|435850454|ref|YP_007312040.1| - 0.00027 20.6 0.0 0.00062 19.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|435850454|ref|YP_007312040.1| - 0.00028 20.3 0.0 0.00047 19.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|435850454|ref|YP_007312040.1| - 0.00042 20.4 0.1 0.0012 19.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|435850454|ref|YP_007312040.1| - 0.00052 20.3 0.0 0.0016 18.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|435850454|ref|YP_007312040.1| - 0.00077 19.5 0.0 0.087 13.0 0.0 2.4 2 0 0 2 2 2 1 RNA helicase T2SE PF00437.15 gi|435850454|ref|YP_007312040.1| - 0.0012 17.8 0.0 0.002 17.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_32 PF13654.1 gi|435850454|ref|YP_007312040.1| - 0.0018 17.0 0.0 0.013 14.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|435850454|ref|YP_007312040.1| - 0.0019 17.7 0.0 0.0031 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|435850454|ref|YP_007312040.1| - 0.0029 17.8 0.0 0.0057 16.8 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|435850454|ref|YP_007312040.1| - 0.0048 16.6 0.0 0.0097 15.6 0.0 1.6 1 0 0 1 1 1 1 NTPase AAA_33 PF13671.1 gi|435850454|ref|YP_007312040.1| - 0.006 16.4 0.1 0.027 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|435850454|ref|YP_007312040.1| - 0.0065 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_28 PF13521.1 gi|435850454|ref|YP_007312040.1| - 0.013 15.4 0.6 0.045 13.7 0.0 2.1 2 1 1 3 3 2 0 AAA domain DUF2075 PF09848.4 gi|435850454|ref|YP_007312040.1| - 0.014 14.3 0.0 0.019 13.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|435850454|ref|YP_007312040.1| - 0.036 14.0 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_11 PF13086.1 gi|435850454|ref|YP_007312040.1| - 0.036 13.6 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|435850454|ref|YP_007312040.1| - 0.044 12.9 0.0 0.54 9.4 0.0 2.2 2 0 0 2 2 2 0 Chromatin associated protein KTI12 FtsK_SpoIIIE PF01580.13 gi|435850454|ref|YP_007312040.1| - 0.067 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|435850454|ref|YP_007312040.1| - 0.087 12.5 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|435850454|ref|YP_007312040.1| - 0.097 12.3 0.1 0.24 11.1 0.0 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP-synt_ab PF00006.20 gi|435850454|ref|YP_007312040.1| - 0.11 12.0 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Zot PF05707.7 gi|435850454|ref|YP_007312040.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.6 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_30 PF13604.1 gi|435850454|ref|YP_007312040.1| - 0.15 11.6 0.0 0.38 10.2 0.0 1.6 2 0 0 2 2 1 0 AAA domain DUF1614 PF07758.6 gi|435850455|ref|YP_007312041.1| - 1.2e-22 80.5 10.4 1.2e-22 80.5 7.2 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) Peptidase_A24 PF01478.13 gi|435850455|ref|YP_007312041.1| - 2.1 8.5 10.1 0.14 12.2 1.7 2.6 2 1 1 3 3 3 0 Type IV leader peptidase family KH_1 PF00013.24 gi|435850456|ref|YP_007312042.1| - 2.5e-14 52.6 12.4 5.6e-09 35.5 0.8 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|435850456|ref|YP_007312042.1| - 3.9e-06 26.3 9.2 0.0017 17.9 0.7 2.8 3 0 0 3 3 3 2 KH domain KH_2 PF07650.12 gi|435850456|ref|YP_007312042.1| - 0.016 14.7 6.4 0.51 9.9 1.0 2.5 2 0 0 2 2 2 0 KH domain Ribosomal_L6 PF00347.18 gi|435850456|ref|YP_007312042.1| - 0.02 15.4 0.2 1.1 9.8 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein L6 KH_4 PF13083.1 gi|435850456|ref|YP_007312042.1| - 0.029 14.0 1.9 2.7 7.7 0.2 2.7 2 0 0 2 2 2 0 KH domain RIO1 PF01163.17 gi|435850457|ref|YP_007312043.1| - 3.3e-60 202.6 0.7 5.1e-60 202.0 0.5 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|435850457|ref|YP_007312043.1| - 6.1e-05 22.1 0.0 0.00094 18.3 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|435850457|ref|YP_007312043.1| - 0.0038 16.9 0.0 0.15 11.7 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family DUF4461 PF14688.1 gi|435850457|ref|YP_007312043.1| - 0.075 12.3 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4461) eIF-1a PF01176.14 gi|435850458|ref|YP_007312044.1| - 3.4e-22 77.6 0.8 4.3e-22 77.2 0.6 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 TGT PF01702.13 gi|435850459|ref|YP_007312045.1| - 1.9e-51 174.6 0.0 2.5e-51 174.2 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase UbiA PF01040.13 gi|435850460|ref|YP_007312046.1| - 5.5e-35 120.8 23.3 6.8e-35 120.5 16.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Pex24p PF06398.6 gi|435850460|ref|YP_007312046.1| - 0.19 10.5 0.0 0.19 10.5 0.0 1.6 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin DUF4579 PF15158.1 gi|435850460|ref|YP_007312046.1| - 0.36 10.3 3.7 0.78 9.2 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4579) DAO PF01266.19 gi|435850461|ref|YP_007312047.1| - 5.3e-12 45.3 0.1 1e-06 27.8 0.0 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|435850461|ref|YP_007312047.1| - 4.5e-09 35.2 0.6 3.4e-07 29.0 0.2 2.3 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|435850461|ref|YP_007312047.1| - 3e-07 29.9 0.0 5.2e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|435850461|ref|YP_007312047.1| - 2.3e-06 26.7 0.0 3.6e-06 26.1 0.0 1.2 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|435850461|ref|YP_007312047.1| - 2.9e-06 27.3 0.4 5.7e-06 26.3 0.3 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|435850461|ref|YP_007312047.1| - 1.4e-05 24.3 0.0 0.00051 19.1 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|435850461|ref|YP_007312047.1| - 3.4e-05 23.0 0.0 0.00013 21.1 0.0 1.9 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|435850461|ref|YP_007312047.1| - 6.1e-05 22.0 0.0 0.00015 20.7 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|435850461|ref|YP_007312047.1| - 0.00079 19.5 0.0 0.0017 18.4 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|435850461|ref|YP_007312047.1| - 0.0014 19.0 0.3 0.25 11.7 0.0 2.7 2 1 1 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|435850461|ref|YP_007312047.1| - 0.0014 17.5 0.2 0.0042 15.9 0.2 1.9 2 1 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|435850461|ref|YP_007312047.1| - 0.013 15.5 0.0 0.041 13.9 0.0 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|435850461|ref|YP_007312047.1| - 0.029 13.0 0.7 0.67 8.5 0.0 2.1 1 1 0 2 2 2 0 Tryptophan halogenase Radical_SAM PF04055.16 gi|435850462|ref|YP_007312048.1| - 3.1e-18 66.5 0.0 4.4e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|435850462|ref|YP_007312048.1| - 7.1e-07 29.4 0.3 1.8e-06 28.1 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|435850462|ref|YP_007312048.1| - 3.9e-06 27.0 0.0 6.9e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|435850462|ref|YP_007312048.1| - 0.00097 19.1 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain IncA PF04156.9 gi|435850463|ref|YP_007312049.1| - 0.012 15.2 10.5 0.012 15.2 7.3 3.1 1 1 2 3 3 3 0 IncA protein Laminin_II PF06009.7 gi|435850463|ref|YP_007312049.1| - 1.7 8.3 29.7 0.11 12.2 0.6 4.0 1 1 4 5 5 5 0 Laminin Domain II FUSC-like PF12805.2 gi|435850463|ref|YP_007312049.1| - 5.5 5.8 10.6 0.54 9.1 1.7 2.2 2 0 0 2 2 2 0 FUSC-like inner membrane protein yccS HAD PF12710.2 gi|435850464|ref|YP_007312050.1| - 1.7e-17 64.2 0.0 2.1e-17 63.9 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|435850464|ref|YP_007312050.1| - 9.4e-14 52.3 1.1 1.4e-11 45.2 0.8 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|435850464|ref|YP_007312050.1| - 1.2e-10 41.3 0.1 7.3e-09 35.5 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|435850464|ref|YP_007312050.1| - 5.8e-09 35.4 0.0 3.3e-07 29.7 0.0 2.1 1 1 0 1 1 1 1 Putative Phosphatase HAD_2 PF13419.1 gi|435850464|ref|YP_007312050.1| - 1.8e-06 28.2 0.0 4.2e-06 27.1 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|435850464|ref|YP_007312050.1| - 0.00013 21.4 0.1 0.029 13.6 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase DUF705 PF05152.7 gi|435850464|ref|YP_007312050.1| - 0.046 12.7 0.1 0.083 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF705) B12-binding PF02310.14 gi|435850464|ref|YP_007312050.1| - 0.056 13.3 0.2 0.48 10.2 0.0 2.5 3 0 0 3 3 3 0 B12 binding domain Hydrolase_like PF13242.1 gi|435850464|ref|YP_007312050.1| - 0.058 13.1 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like MTD PF01993.13 gi|435850465|ref|YP_007312051.1| - 6.8e-94 313.9 4.0 7.5e-94 313.8 2.8 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase DUF996 PF06195.8 gi|435850466|ref|YP_007312052.1| - 0.021 14.7 0.7 0.022 14.7 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF996) DUF1469 PF07332.6 gi|435850466|ref|YP_007312052.1| - 0.048 13.3 0.0 0.05 13.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Tetraspannin PF00335.15 gi|435850466|ref|YP_007312052.1| - 0.093 11.9 0.1 0.093 11.9 0.1 1.0 1 0 0 1 1 1 0 Tetraspanin family PsbN PF02468.10 gi|435850466|ref|YP_007312052.1| - 1.1 8.9 4.4 1.4 8.5 3.0 1.2 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) PK_C PF02887.11 gi|435850467|ref|YP_007312053.1| - 1.8e-17 62.9 0.9 2.4e-17 62.5 0.6 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Pyr_redox PF00070.22 gi|435850467|ref|YP_007312053.1| - 0.019 15.3 0.3 0.24 11.8 0.1 2.4 1 1 2 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Aldo_ket_red PF00248.16 gi|435850467|ref|YP_007312053.1| - 0.02 13.7 0.0 0.026 13.3 0.0 1.1 1 0 0 1 1 1 0 Aldo/keto reductase family AP_endonuc_2 PF01261.19 gi|435850467|ref|YP_007312053.1| - 0.074 12.3 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel PAC2 PF09754.4 gi|435850468|ref|YP_007312054.1| - 2.2e-52 178.0 0.2 2.6e-52 177.8 0.1 1.0 1 0 0 1 1 1 1 PAC2 family DUF473 PF04322.7 gi|435850469|ref|YP_007312055.1| - 2.6e-39 133.5 0.0 2.9e-39 133.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) tRNA-synt_2d PF01409.15 gi|435850470|ref|YP_007312056.1| - 2.5e-55 187.3 0.6 9.5e-49 165.8 0.0 3.0 2 1 1 3 3 3 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|435850470|ref|YP_007312056.1| - 0.00044 19.8 0.1 0.0015 18.1 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|435850470|ref|YP_007312056.1| - 0.09 11.5 0.3 3.1 6.4 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) DUF4440 PF14534.1 gi|435850470|ref|YP_007312056.1| - 0.11 12.7 0.0 0.41 10.8 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) Translin PF01997.11 gi|435850471|ref|YP_007312057.1| - 4.9e-29 101.3 0.0 5.8e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Translin family LEA_1 PF03760.10 gi|435850471|ref|YP_007312057.1| - 0.16 12.1 1.4 0.27 11.3 0.0 2.0 3 0 0 3 3 3 0 Late embryogenesis abundant (LEA) group 1 UPF0147 PF03685.8 gi|435850472|ref|YP_007312058.1| - 1e-35 121.4 1.5 1.1e-35 121.3 1.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|435850472|ref|YP_007312058.1| - 0.00017 21.6 0.1 0.051 13.6 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.7 gi|435850473|ref|YP_007312059.1| - 2.4e-15 56.0 0.5 4.1e-15 55.2 0.4 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|435850473|ref|YP_007312059.1| - 0.0076 16.0 0.6 0.013 15.2 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF3279 PF11682.3 gi|435850473|ref|YP_007312059.1| - 0.14 11.7 0.4 0.29 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3279) Prok-RING_1 PF14446.1 gi|435850473|ref|YP_007312059.1| - 0.14 11.8 0.6 0.22 11.2 0.4 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF35_N PF12172.3 gi|435850473|ref|YP_007312059.1| - 0.51 10.3 2.8 1 9.3 2.0 1.5 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ERCC4 PF02732.10 gi|435850474|ref|YP_007312060.1| - 3.9e-30 104.4 0.4 8.4e-29 100.1 0.1 2.5 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|435850474|ref|YP_007312060.1| - 9.1e-20 70.3 0.0 3e-19 68.6 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|435850474|ref|YP_007312060.1| - 1.2e-17 63.9 0.3 6.3e-17 61.5 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_2 PF12826.2 gi|435850474|ref|YP_007312060.1| - 5e-14 51.9 0.1 1e-12 47.7 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif ResIII PF04851.10 gi|435850474|ref|YP_007312060.1| - 5.2e-14 52.4 2.7 8.3e-14 51.8 0.0 2.6 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|435850474|ref|YP_007312060.1| - 1.1e-09 38.3 0.1 5e-09 36.1 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|435850474|ref|YP_007312060.1| - 6.9e-06 25.4 0.0 0.0002 20.8 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|435850474|ref|YP_007312060.1| - 0.0001 22.4 3.9 0.0005 20.2 0.0 3.8 4 1 0 4 4 4 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.1 gi|435850474|ref|YP_007312060.1| - 0.042 14.0 0.0 0.17 12.1 0.0 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix domain PTPS_related PF10131.4 gi|435850474|ref|YP_007312060.1| - 0.076 11.1 0.2 0.11 10.6 0.1 1.2 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein tRNA-synt_2b PF00587.20 gi|435850475|ref|YP_007312061.1| - 4.6e-57 192.3 0.1 8.7e-57 191.4 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|435850475|ref|YP_007312061.1| - 1.3e-24 85.9 0.3 1.3e-23 82.7 0.1 2.5 2 0 0 2 2 2 1 Anticodon binding domain Zn-ribbon_8 PF09723.5 gi|435850475|ref|YP_007312061.1| - 0.024 14.5 1.2 4.9 7.2 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2 PF00096.21 gi|435850475|ref|YP_007312061.1| - 0.062 13.6 2.0 0.17 12.2 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type CpXC PF14353.1 gi|435850475|ref|YP_007312061.1| - 0.12 12.3 0.5 0.31 11.0 0.4 1.8 1 0 0 1 1 1 0 CpXC protein Cytochrom_C_2 PF01322.15 gi|435850475|ref|YP_007312061.1| - 1.3 9.6 3.3 3.4 8.2 0.1 2.8 3 0 0 3 3 3 0 Cytochrome C' DeoC PF01791.4 gi|435850476|ref|YP_007312062.1| - 4e-56 189.9 0.0 4.7e-56 189.7 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|435850476|ref|YP_007312062.1| - 9.6e-05 21.8 0.2 0.00018 20.9 0.1 1.5 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.12 gi|435850476|ref|YP_007312062.1| - 0.0043 16.1 0.0 1.3 8.1 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI AP_endonuc_2 PF01261.19 gi|435850476|ref|YP_007312062.1| - 0.018 14.3 0.0 0.026 13.8 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF561 PF04481.7 gi|435850476|ref|YP_007312062.1| - 0.12 11.2 0.1 0.22 10.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF561) Dus PF01207.12 gi|435850476|ref|YP_007312062.1| - 0.15 10.8 0.1 3.7 6.2 0.0 2.4 2 1 0 2 2 2 0 Dihydrouridine synthase (Dus) dUTPase PF00692.14 gi|435850477|ref|YP_007312063.1| - 3.2e-10 39.5 0.0 4.8e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 dUTPase VCBS PF13517.1 gi|435850478|ref|YP_007312064.1| - 9.3e-10 38.7 21.6 0.0001 22.6 3.5 4.3 2 2 2 4 4 4 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|435850478|ref|YP_007312064.1| - 0.0001 21.8 19.8 0.082 12.6 2.2 4.5 4 0 0 4 4 4 4 FG-GAP repeat SNARE_assoc PF09335.6 gi|435850480|ref|YP_007312066.1| - 1.4e-15 57.5 3.3 1.4e-15 57.5 2.3 1.8 1 1 1 2 2 2 1 SNARE associated Golgi protein HhH-GPD PF00730.20 gi|435850481|ref|YP_007312067.1| - 3.4e-24 85.2 0.0 4.5e-24 84.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|435850481|ref|YP_007312067.1| - 1.9e-10 39.8 0.0 3e-09 36.0 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|435850481|ref|YP_007312067.1| - 0.0005 20.1 4.4 0.0009 19.3 3.0 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|435850481|ref|YP_007312067.1| - 0.00069 19.7 0.1 0.018 15.1 0.1 2.3 1 1 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|435850481|ref|YP_007312067.1| - 0.08 12.8 0.0 6.6 6.6 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif Fae PF08714.6 gi|435850482|ref|YP_007312068.1| - 9.9e-72 239.8 0.3 2.6e-71 238.5 0.2 1.7 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|435850482|ref|YP_007312068.1| - 7.5e-24 84.3 3.2 2.7e-23 82.5 2.2 1.9 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|435850482|ref|YP_007312068.1| - 1.4e-05 24.2 0.9 6.4e-05 22.1 0.6 2.1 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|435850482|ref|YP_007312068.1| - 0.0008 18.7 3.0 0.0065 15.7 0.3 2.5 1 1 1 3 3 3 1 PcrB family QRPTase_C PF01729.14 gi|435850482|ref|YP_007312068.1| - 0.04 13.4 2.2 1.3 8.5 0.1 3.0 1 1 1 3 3 3 0 Quinolinate phosphoribosyl transferase, C-terminal domain TIM PF00121.13 gi|435850483|ref|YP_007312069.1| - 4.8e-30 104.4 0.3 7.2e-28 97.2 0.2 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|435850483|ref|YP_007312069.1| - 0.00025 20.2 1.2 0.00056 19.0 0.7 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|435850483|ref|YP_007312069.1| - 0.00076 18.7 2.2 0.0012 18.0 1.5 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|435850483|ref|YP_007312069.1| - 0.019 13.8 2.6 0.047 12.5 0.8 1.9 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Hydrolase_like PF13242.1 gi|435850483|ref|YP_007312069.1| - 0.03 14.0 0.3 3.1 7.5 0.0 2.3 2 0 0 2 2 2 0 HAD-hyrolase-like PDH PF02153.12 gi|435850485|ref|YP_007312071.1| - 7.1e-54 182.3 0.0 1.7e-53 181.1 0.0 1.6 2 0 0 2 2 2 1 Prephenate dehydrogenase NAD_binding_2 PF03446.10 gi|435850485|ref|YP_007312071.1| - 1.8e-08 34.3 0.0 3.3e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|435850485|ref|YP_007312071.1| - 6.6e-05 23.2 0.0 0.00017 21.9 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|435850485|ref|YP_007312071.1| - 0.00035 20.3 1.2 0.0079 15.9 0.8 2.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|435850485|ref|YP_007312071.1| - 0.0021 17.2 0.0 0.0036 16.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|435850485|ref|YP_007312071.1| - 0.0049 16.2 0.0 0.0098 15.2 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain FDX-ACB PF03147.9 gi|435850485|ref|YP_007312071.1| - 0.0086 16.2 0.0 0.019 15.1 0.0 1.5 1 0 0 1 1 1 1 Ferredoxin-fold anticodon binding domain 3HCDH_N PF02737.13 gi|435850485|ref|YP_007312071.1| - 0.023 14.3 0.1 3.1 7.4 0.0 2.4 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.8 gi|435850485|ref|YP_007312071.1| - 0.14 11.4 0.0 0.37 10.0 0.0 1.7 2 0 0 2 2 2 0 NmrA-like family Shikimate_dh_N PF08501.6 gi|435850486|ref|YP_007312072.1| - 2.4e-26 91.5 0.0 6.7e-26 90.1 0.0 1.8 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|435850486|ref|YP_007312072.1| - 1.8e-18 66.9 0.1 2.7e-18 66.3 0.1 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|435850486|ref|YP_007312072.1| - 1.1e-05 25.8 0.3 1.9e-05 25.0 0.2 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|435850486|ref|YP_007312072.1| - 0.00018 20.6 0.4 0.00023 20.2 0.3 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|435850486|ref|YP_007312072.1| - 0.00034 19.8 0.4 0.00075 18.7 0.1 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|435850486|ref|YP_007312072.1| - 0.00057 19.9 0.8 0.001 19.0 0.6 1.4 1 0 0 1 1 1 1 NADH(P)-binding AdoHcyase_NAD PF00670.16 gi|435850486|ref|YP_007312072.1| - 0.0048 16.7 1.6 0.0088 15.8 1.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|435850486|ref|YP_007312072.1| - 0.0062 15.9 0.1 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|435850486|ref|YP_007312072.1| - 0.0064 16.7 0.1 0.012 15.8 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|435850486|ref|YP_007312072.1| - 0.011 15.6 0.4 0.019 14.8 0.3 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|435850486|ref|YP_007312072.1| - 0.018 14.6 0.2 0.031 13.9 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|435850486|ref|YP_007312072.1| - 0.02 14.2 0.1 0.04 13.2 0.1 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|435850486|ref|YP_007312072.1| - 0.065 13.2 0.2 0.1 12.5 0.2 1.4 1 0 0 1 1 1 0 TrkA-N domain Glyco_trans_1_4 PF13692.1 gi|435850486|ref|YP_007312072.1| - 0.067 13.3 0.0 0.16 12.1 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferases group 1 GFO_IDH_MocA PF01408.17 gi|435850486|ref|YP_007312072.1| - 0.096 13.2 0.1 0.16 12.5 0.1 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.16 gi|435850486|ref|YP_007312072.1| - 0.19 11.3 4.4 1.2 8.6 2.0 2.6 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DHquinase_I PF01487.10 gi|435850487|ref|YP_007312073.1| - 3.4e-55 187.1 0.0 4e-55 186.9 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DHQS PF01959.11 gi|435850488|ref|YP_007312074.1| - 1.6e-152 507.3 4.2 1.8e-152 507.1 2.9 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) DUF2577 PF10844.3 gi|435850488|ref|YP_007312074.1| - 0.012 15.6 0.3 6.4 6.8 0.0 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2577) UPF0086 PF01868.11 gi|435850488|ref|YP_007312074.1| - 0.076 12.6 0.9 0.27 10.8 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function UPF0086 TPP_enzyme_M PF00205.17 gi|435850488|ref|YP_007312074.1| - 0.097 12.4 0.1 0.33 10.7 0.0 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain TOBE_2 PF08402.5 gi|435850488|ref|YP_007312074.1| - 0.16 11.9 0.6 1 9.3 0.0 2.5 3 0 0 3 3 3 0 TOBE domain DeoC PF01791.4 gi|435850489|ref|YP_007312075.1| - 1.2e-58 198.2 0.3 1.4e-58 197.9 0.2 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|435850489|ref|YP_007312075.1| - 0.012 14.9 0.1 0.018 14.4 0.1 1.2 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family KaiC PF06745.8 gi|435850490|ref|YP_007312076.1| - 6.9e-82 273.9 0.8 2.7e-47 160.7 0.3 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|435850490|ref|YP_007312076.1| - 5.6e-13 48.7 0.1 4.5e-07 29.4 0.0 2.5 2 1 0 2 2 2 2 AAA domain RecA PF00154.16 gi|435850490|ref|YP_007312076.1| - 1.5e-07 30.8 8.0 0.00017 20.8 0.1 3.0 3 0 0 3 3 3 2 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|435850490|ref|YP_007312076.1| - 3.5e-07 29.3 0.0 0.015 14.1 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain Rad51 PF08423.6 gi|435850490|ref|YP_007312076.1| - 6e-07 28.6 1.0 0.019 13.9 0.0 2.6 2 0 0 2 2 2 2 Rad51 DUF2075 PF09848.4 gi|435850490|ref|YP_007312076.1| - 9.7e-06 24.7 0.1 0.038 12.9 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ATP-synt_ab PF00006.20 gi|435850490|ref|YP_007312076.1| - 4.3e-05 23.1 0.3 0.24 10.8 0.0 2.7 3 0 0 3 3 3 2 ATP synthase alpha/beta family, nucleotide-binding domain PAXNEB PF05625.6 gi|435850490|ref|YP_007312076.1| - 5.5e-05 22.1 5.2 0.0055 15.5 0.5 2.4 2 1 0 2 2 2 2 PAXNEB protein ResIII PF04851.10 gi|435850490|ref|YP_007312076.1| - 0.00023 21.0 0.1 0.44 10.3 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|435850490|ref|YP_007312076.1| - 0.00033 20.3 2.2 0.019 14.6 0.1 2.4 2 0 0 2 2 2 1 Part of AAA domain IstB_IS21 PF01695.12 gi|435850490|ref|YP_007312076.1| - 0.00051 19.5 0.6 0.79 9.1 0.0 2.5 3 0 0 3 3 3 2 IstB-like ATP binding protein GvpD PF07088.6 gi|435850490|ref|YP_007312076.1| - 0.0012 17.2 1.0 0.048 11.9 0.0 2.6 2 1 1 3 3 3 1 GvpD gas vesicle protein PhoH PF02562.11 gi|435850490|ref|YP_007312076.1| - 0.0013 18.0 1.5 0.26 10.4 0.0 3.1 3 0 0 3 3 3 1 PhoH-like protein DEAD PF00270.24 gi|435850490|ref|YP_007312076.1| - 0.0037 16.7 0.1 0.65 9.4 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Sigma54_activat PF00158.21 gi|435850490|ref|YP_007312076.1| - 0.0041 16.5 0.1 0.58 9.6 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|435850490|ref|YP_007312076.1| - 0.0065 16.7 0.3 2.5 8.3 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|435850490|ref|YP_007312076.1| - 0.016 14.8 0.0 0.35 10.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|435850490|ref|YP_007312076.1| - 0.024 13.5 1.8 0.31 9.8 0.1 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|435850490|ref|YP_007312076.1| - 0.025 14.5 0.5 0.6 10.0 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain TrwB_AAD_bind PF10412.4 gi|435850490|ref|YP_007312076.1| - 0.045 12.3 2.1 1.7 7.1 0.2 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|435850490|ref|YP_007312076.1| - 0.047 13.1 0.2 10 5.5 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_5 PF07728.9 gi|435850490|ref|YP_007312076.1| - 0.078 12.7 0.5 1.1 8.9 0.0 2.7 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|435850490|ref|YP_007312076.1| - 0.093 12.1 0.0 1.4 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|435850490|ref|YP_007312076.1| - 0.9 9.7 5.0 37 4.5 0.8 3.2 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|435850490|ref|YP_007312076.1| - 2.1 7.7 7.3 4.1 6.8 0.7 2.8 4 0 0 4 4 3 0 FtsK/SpoIIIE family GATase PF00117.23 gi|435850491|ref|YP_007312077.1| - 7.4e-37 126.6 0.0 8.2e-37 126.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|435850491|ref|YP_007312077.1| - 3.5e-12 46.2 1.5 3e-11 43.1 0.2 2.5 1 1 1 2 2 2 1 Peptidase C26 SRP54 PF00448.17 gi|435850492|ref|YP_007312078.1| - 7.5e-70 234.3 0.0 1.5e-69 233.4 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|435850492|ref|YP_007312078.1| - 1.1e-29 102.7 1.7 1.1e-29 102.7 1.2 3.1 3 0 0 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|435850492|ref|YP_007312078.1| - 3.3e-15 55.9 0.7 1e-14 54.3 0.1 2.2 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|435850492|ref|YP_007312078.1| - 2e-07 30.5 1.2 4e-06 26.3 0.5 2.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|435850492|ref|YP_007312078.1| - 1.1e-06 28.1 0.2 8.4e-06 25.3 0.1 2.3 2 1 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|435850492|ref|YP_007312078.1| - 2.7e-05 23.9 0.0 6.5e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|435850492|ref|YP_007312078.1| - 0.00019 21.5 0.1 0.00074 19.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|435850492|ref|YP_007312078.1| - 0.00026 21.8 0.1 0.00092 20.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|435850492|ref|YP_007312078.1| - 0.00034 19.4 0.1 0.015 14.1 0.0 2.3 2 0 0 2 2 2 1 ArgK protein AAA_33 PF13671.1 gi|435850492|ref|YP_007312078.1| - 0.00048 20.0 0.0 0.0033 17.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain 6PF2K PF01591.13 gi|435850492|ref|YP_007312078.1| - 0.00062 18.8 0.0 0.0013 17.8 0.0 1.5 1 0 0 1 1 1 1 6-phosphofructo-2-kinase Zeta_toxin PF06414.7 gi|435850492|ref|YP_007312078.1| - 0.0012 17.9 0.0 0.0029 16.7 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin TFIIA_gamma_N PF02268.11 gi|435850492|ref|YP_007312078.1| - 0.0032 16.9 0.1 0.014 14.9 0.0 2.1 2 0 0 2 2 2 1 Transcription initiation factor IIA, gamma subunit, helical domain AAA_10 PF12846.2 gi|435850492|ref|YP_007312078.1| - 0.0073 15.7 0.1 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain APS_kinase PF01583.15 gi|435850492|ref|YP_007312078.1| - 0.0092 15.6 0.0 0.024 14.2 0.0 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.1 gi|435850492|ref|YP_007312078.1| - 0.011 15.6 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Thymidylate_kin PF02223.12 gi|435850492|ref|YP_007312078.1| - 0.014 14.7 0.0 0.042 13.2 0.0 1.8 1 0 0 1 1 1 0 Thymidylate kinase ATP_bind_1 PF03029.12 gi|435850492|ref|YP_007312078.1| - 0.015 14.8 0.0 0.062 12.8 0.0 2.0 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein LpxK PF02606.9 gi|435850492|ref|YP_007312078.1| - 0.017 14.1 0.0 0.036 13.0 0.0 1.5 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase TrwB_AAD_bind PF10412.4 gi|435850492|ref|YP_007312078.1| - 0.018 13.6 0.0 0.04 12.5 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PduV-EutP PF10662.4 gi|435850492|ref|YP_007312078.1| - 0.026 14.0 0.1 0.12 11.8 0.1 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation KTI12 PF08433.5 gi|435850492|ref|YP_007312078.1| - 0.027 13.6 0.0 0.066 12.4 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|435850492|ref|YP_007312078.1| - 0.032 13.8 0.0 0.1 12.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.1 gi|435850492|ref|YP_007312078.1| - 0.038 13.9 0.0 4.8 7.1 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.1 gi|435850492|ref|YP_007312078.1| - 0.045 14.0 1.6 0.12 12.6 0.3 2.3 2 1 0 2 2 1 0 AAA domain Glyco_transf_4 PF13439.1 gi|435850492|ref|YP_007312078.1| - 0.054 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 AAA_28 PF13521.1 gi|435850492|ref|YP_007312078.1| - 0.076 12.9 0.3 0.19 11.6 0.1 1.8 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|435850492|ref|YP_007312078.1| - 0.088 12.2 3.5 2.3 7.5 1.1 3.6 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|435850492|ref|YP_007312078.1| - 0.12 12.1 0.0 0.43 10.3 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain G-alpha PF00503.15 gi|435850492|ref|YP_007312078.1| - 0.12 11.0 0.3 0.37 9.4 0.2 1.8 1 1 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.1 gi|435850492|ref|YP_007312078.1| - 0.24 10.9 2.1 4.6 6.7 1.4 2.6 1 1 0 1 1 1 0 AAA domain Usp PF00582.21 gi|435850493|ref|YP_007312079.1| - 1.2e-31 109.7 0.5 1.5e-31 109.4 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family PGM_PMM_I PF02878.11 gi|435850493|ref|YP_007312079.1| - 0.08 12.4 0.0 0.45 9.9 0.0 2.0 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ADH_zinc_N PF00107.21 gi|435850493|ref|YP_007312079.1| - 3.8 7.0 5.7 27 4.3 0.1 3.4 3 1 1 4 4 4 0 Zinc-binding dehydrogenase DUF2072 PF09845.4 gi|435850494|ref|YP_007312080.1| - 1.4e-42 144.7 0.1 1.7e-42 144.4 0.1 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) zf-TFIIB PF13453.1 gi|435850494|ref|YP_007312080.1| - 0.016 14.3 5.7 0.033 13.3 0.3 2.4 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|435850494|ref|YP_007312080.1| - 0.22 10.7 1.7 9.5 5.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1624 PF07786.7 gi|435850495|ref|YP_007312081.1| - 3.3e-70 235.8 16.2 4e-70 235.6 11.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.17 gi|435850495|ref|YP_007312081.1| - 2.5e-09 36.4 31.4 6.5e-05 21.9 12.0 2.3 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.4 gi|435850495|ref|YP_007312081.1| - 9.7e-05 21.2 10.6 0.00017 20.4 3.0 2.7 2 1 0 2 2 2 2 OpgC protein DUF418 PF04235.7 gi|435850495|ref|YP_007312081.1| - 0.017 14.8 0.7 0.017 14.8 0.5 2.5 2 2 0 2 2 2 0 Protein of unknown function (DUF418) IMS PF00817.15 gi|435850496|ref|YP_007312082.1| - 2.5e-45 153.9 0.0 3.5e-45 153.4 0.0 1.2 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|435850496|ref|YP_007312082.1| - 6.5e-22 77.8 0.2 1.2e-21 76.9 0.1 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|435850496|ref|YP_007312082.1| - 1.7e-10 40.2 0.1 5.7e-10 38.6 0.0 2.0 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|435850496|ref|YP_007312082.1| - 5.7e-05 23.2 0.1 0.00013 22.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|435850496|ref|YP_007312082.1| - 0.00054 19.9 0.0 0.0009 19.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|435850496|ref|YP_007312082.1| - 0.0062 16.4 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|435850496|ref|YP_007312082.1| - 0.033 13.7 0.0 0.077 12.5 0.0 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HHH_8 PF14716.1 gi|435850496|ref|YP_007312082.1| - 0.1 12.7 0.1 1.7 8.8 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH PF00633.18 gi|435850496|ref|YP_007312082.1| - 0.11 12.2 0.1 0.31 10.8 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4199 PF13858.1 gi|435850497|ref|YP_007312083.1| - 0.65 9.9 6.9 0.4 10.5 3.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) PGPGW PF09656.5 gi|435850497|ref|YP_007312083.1| - 1.1 8.6 5.8 2 7.8 4.0 1.4 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) Ribosomal_S17e PF00833.13 gi|435850498|ref|YP_007312084.1| - 3.3e-15 55.9 1.3 3.4e-15 55.8 0.9 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.17 gi|435850499|ref|YP_007312085.1| - 1.1e-97 326.2 0.3 1.2e-97 326.0 0.2 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PA PF02225.17 gi|435850499|ref|YP_007312085.1| - 4.5e-05 23.0 1.5 0.00088 18.9 0.1 2.4 1 1 1 2 2 2 1 PA domain DUF849 PF05853.7 gi|435850499|ref|YP_007312085.1| - 0.024 13.5 0.5 0.088 11.6 0.3 1.9 1 1 1 2 2 2 0 Prokaryotic protein of unknown function (DUF849) DapB_C PF05173.9 gi|435850500|ref|YP_007312086.1| - 2.4e-47 160.0 0.3 3.5e-47 159.4 0.2 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|435850500|ref|YP_007312086.1| - 6.4e-32 110.0 1.7 1e-31 109.4 1.2 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|435850500|ref|YP_007312086.1| - 0.019 15.2 0.3 0.034 14.4 0.2 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain 3Beta_HSD PF01073.14 gi|435850500|ref|YP_007312086.1| - 0.045 12.4 1.0 0.081 11.6 0.7 1.5 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family PyrI PF01948.13 gi|435850501|ref|YP_007312087.1| - 3.6e-34 116.6 2.2 5.3e-34 116.1 1.5 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|435850501|ref|YP_007312087.1| - 3e-19 68.2 4.6 6e-19 67.2 3.2 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain RD3 PF14473.1 gi|435850501|ref|YP_007312087.1| - 0.041 13.3 0.2 7.1 6.1 0.0 2.2 1 1 1 2 2 2 0 RD3 protein TF_Zn_Ribbon PF08271.7 gi|435850501|ref|YP_007312087.1| - 0.069 12.4 0.2 0.14 11.4 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding OTCace_N PF02729.16 gi|435850502|ref|YP_007312088.1| - 4.5e-48 162.5 0.0 3.7e-47 159.5 0.0 2.0 1 1 1 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|435850502|ref|YP_007312088.1| - 3e-38 131.1 0.0 6.4e-38 130.0 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Methyltransf_6 PF03737.10 gi|435850503|ref|YP_007312089.1| - 1.8e-36 125.3 2.5 1.8e-36 125.3 1.7 1.9 2 0 0 2 2 2 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|435850503|ref|YP_007312089.1| - 3.7e-13 49.4 4.7 6.7e-13 48.5 3.3 1.5 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PEP_mutase PF13714.1 gi|435850503|ref|YP_007312089.1| - 4.3e-06 26.1 2.2 0.00052 19.2 0.1 2.5 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase NMO PF03060.10 gi|435850503|ref|YP_007312089.1| - 9.7e-06 24.9 9.1 1.7e-05 24.1 5.3 1.8 1 1 1 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|435850503|ref|YP_007312089.1| - 3.1e-05 23.3 0.4 3.1e-05 23.3 0.3 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.7 gi|435850503|ref|YP_007312089.1| - 0.00082 18.3 2.4 0.0019 17.1 0.5 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF561) TMP-TENI PF02581.12 gi|435850503|ref|YP_007312089.1| - 0.0067 15.5 3.9 0.0083 15.2 0.4 2.5 2 1 1 3 3 3 1 Thiamine monophosphate synthase/TENI Dus PF01207.12 gi|435850503|ref|YP_007312089.1| - 0.0086 14.9 1.4 0.017 13.9 0.2 2.1 1 1 2 3 3 3 1 Dihydrouridine synthase (Dus) CBM_17_28 PF03424.9 gi|435850503|ref|YP_007312089.1| - 0.051 13.2 0.1 0.24 10.9 0.0 2.0 2 0 0 2 2 2 0 Carbohydrate binding domain (family 17/28) Arc_PepC_II PF06847.6 gi|435850504|ref|YP_007312090.1| - 2.5e-21 75.9 5.3 3.4e-21 75.4 0.0 2.4 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|435850504|ref|YP_007312090.1| - 1.9e-11 44.0 7.3 1.9e-11 44.0 5.1 2.0 2 1 1 3 3 3 1 Type IV leader peptidase family RQC PF09382.5 gi|435850506|ref|YP_007312092.1| - 2.9e-27 94.4 0.2 3.4e-26 91.0 0.0 2.6 2 0 0 2 2 2 1 RQC domain HRDC PF00570.18 gi|435850506|ref|YP_007312092.1| - 2.1e-22 78.5 0.0 5.8e-22 77.1 0.0 1.8 1 0 0 1 1 1 1 HRDC domain DEAD PF00270.24 gi|435850506|ref|YP_007312092.1| - 8e-21 74.2 0.0 9.3e-20 70.7 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|435850506|ref|YP_007312092.1| - 3.9e-20 71.5 0.1 2e-17 62.8 0.0 3.5 3 0 0 3 3 3 1 Helicase conserved C-terminal domain Helicase_Sgs1 PF11408.3 gi|435850506|ref|YP_007312092.1| - 0.00026 20.7 0.0 0.00063 19.5 0.0 1.6 1 0 0 1 1 1 1 Sgs1 RecQ helicase ResIII PF04851.10 gi|435850506|ref|YP_007312092.1| - 0.00045 20.0 0.0 0.0023 17.7 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit zf-CXXC PF02008.15 gi|435850506|ref|YP_007312092.1| - 0.06 13.1 0.7 0.15 11.9 0.5 1.7 1 0 0 1 1 1 0 CXXC zinc finger domain DUF4224 PF13986.1 gi|435850506|ref|YP_007312092.1| - 0.12 11.9 0.2 3.3 7.3 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4224) GMP_synt_C PF00958.17 gi|435850507|ref|YP_007312093.1| - 5.6e-29 99.7 0.0 1.1e-28 98.8 0.0 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|435850507|ref|YP_007312093.1| - 2.3e-10 39.8 0.0 0.00011 21.1 0.0 2.1 2 0 0 2 2 2 2 NAD synthase QueC PF06508.8 gi|435850507|ref|YP_007312093.1| - 3.8e-05 23.0 0.0 0.00061 19.1 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|435850507|ref|YP_007312093.1| - 0.00011 20.9 0.0 0.011 14.3 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|435850507|ref|YP_007312093.1| - 0.00022 20.8 0.0 0.00041 19.9 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|435850507|ref|YP_007312093.1| - 0.0093 15.4 0.0 0.046 13.1 0.0 2.0 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|435850507|ref|YP_007312093.1| - 0.076 12.8 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family TFIID_90kDa PF04494.10 gi|435850507|ref|YP_007312093.1| - 0.15 12.0 0.0 0.79 9.7 0.0 1.9 2 0 0 2 2 2 0 WD40 associated region in TFIID subunit Radical_SAM PF04055.16 gi|435850508|ref|YP_007312094.1| - 2.3e-07 31.1 0.0 4e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Rubredoxin PF00301.15 gi|435850508|ref|YP_007312094.1| - 0.033 14.0 0.1 0.08 12.8 0.1 1.6 1 0 0 1 1 1 0 Rubredoxin UPF0547 PF10571.4 gi|435850508|ref|YP_007312094.1| - 0.93 9.2 5.5 0.82 9.4 0.1 2.9 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 AA_kinase PF00696.23 gi|435850509|ref|YP_007312095.1| - 5.3e-41 140.7 6.8 6.2e-41 140.5 4.7 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF458 PF04308.7 gi|435850509|ref|YP_007312095.1| - 0.021 14.5 1.3 0.024 14.3 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF458) MC1 PF05854.6 gi|435850510|ref|YP_007312096.1| - 7.7e-47 157.2 1.9 8.5e-47 157.0 1.3 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 GCHY-1 PF02649.9 gi|435850511|ref|YP_007312097.1| - 8.9e-90 300.6 4.5 1e-89 300.4 3.1 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF2098 PF09871.4 gi|435850512|ref|YP_007312098.1| - 1.3e-21 76.3 0.4 1.5e-21 76.0 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) NTP_transf_2 PF01909.18 gi|435850513|ref|YP_007312099.1| - 0.00037 20.7 0.1 0.00085 19.5 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain Pro-kuma_activ PF09286.6 gi|435850513|ref|YP_007312099.1| - 0.044 13.8 0.0 0.91 9.5 0.0 2.3 2 0 0 2 2 2 0 Pro-kumamolisin, activation domain Peptidase_M20 PF01546.23 gi|435850514|ref|YP_007312100.1| - 1.7e-27 96.1 0.0 2.2e-27 95.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|435850514|ref|YP_007312100.1| - 2e-11 43.6 0.0 3.6e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|435850514|ref|YP_007312100.1| - 0.054 13.2 0.0 0.32 10.7 0.0 1.9 2 0 0 2 2 2 0 Peptidase family M28 Acetyltransf_1 PF00583.19 gi|435850515|ref|YP_007312101.1| - 1e-13 51.0 0.0 1.4e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|435850515|ref|YP_007312101.1| - 6.3e-11 42.2 0.0 8.5e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|435850515|ref|YP_007312101.1| - 2.3e-08 34.1 0.0 2.7e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|435850515|ref|YP_007312101.1| - 2.4e-06 27.5 0.0 2.9e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|435850515|ref|YP_007312101.1| - 4.4e-05 23.1 0.0 6.2e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|435850515|ref|YP_007312101.1| - 4.8e-05 23.5 0.0 5.5e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|435850515|ref|YP_007312101.1| - 0.00018 21.0 0.0 0.00021 20.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|435850515|ref|YP_007312101.1| - 0.00038 20.3 0.0 0.00045 20.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|435850515|ref|YP_007312101.1| - 0.00071 19.4 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.1 gi|435850515|ref|YP_007312101.1| - 0.044 13.5 0.0 0.093 12.4 0.0 1.6 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|435850515|ref|YP_007312101.1| - 0.14 11.4 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Acetyltransf_1 PF00583.19 gi|435850516|ref|YP_007312102.1| - 1.2e-14 54.0 0.0 1.7e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|435850516|ref|YP_007312102.1| - 7e-14 51.7 0.1 1.1e-13 51.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|435850516|ref|YP_007312102.1| - 6.3e-11 42.4 0.3 1.7e-10 41.0 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|435850516|ref|YP_007312102.1| - 8.6e-09 35.5 0.0 1.1e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|435850516|ref|YP_007312102.1| - 2.8e-07 30.4 0.0 1.5e-06 28.0 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|435850516|ref|YP_007312102.1| - 1.2e-06 28.2 0.0 1.8e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|435850516|ref|YP_007312102.1| - 2.2e-05 24.6 0.0 3.5e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|435850516|ref|YP_007312102.1| - 0.00012 22.0 0.0 0.00015 21.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF615 PF04751.9 gi|435850516|ref|YP_007312102.1| - 0.13 11.9 0.1 0.17 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF615) Lambda_Bor PF06291.6 gi|435850517|ref|YP_007312103.1| - 0.0072 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Bor protein CCG PF02754.11 gi|435850518|ref|YP_007312104.1| - 1.8e-33 114.3 2.6 5.1e-21 74.4 0.6 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Prok-RING_4 PF14447.1 gi|435850518|ref|YP_007312104.1| - 0.035 13.6 0.8 0.098 12.2 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 Fer4_8 PF13183.1 gi|435850519|ref|YP_007312105.1| - 1.2e-13 50.8 9.8 2.1e-13 50.0 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435850519|ref|YP_007312105.1| - 2.1e-09 37.5 10.8 3.8e-09 36.7 7.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435850519|ref|YP_007312105.1| - 1.3e-08 34.9 8.3 2.7e-08 33.9 5.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435850519|ref|YP_007312105.1| - 1e-07 31.6 9.4 2e-07 30.6 6.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435850519|ref|YP_007312105.1| - 3.3e-06 26.8 6.0 6.1e-06 26.0 4.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435850519|ref|YP_007312105.1| - 6.5e-06 26.4 12.6 0.00023 21.4 10.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|435850519|ref|YP_007312105.1| - 1.3e-05 25.5 12.6 0.00036 20.8 1.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435850519|ref|YP_007312105.1| - 3e-05 23.6 10.2 0.005 16.6 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|435850519|ref|YP_007312105.1| - 0.00023 20.6 12.4 0.0057 16.2 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|435850519|ref|YP_007312105.1| - 0.011 15.3 6.4 0.13 11.8 0.6 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|435850519|ref|YP_007312105.1| - 0.023 15.4 13.5 0.48 11.2 1.7 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|435850519|ref|YP_007312105.1| - 0.04 14.4 4.3 0.54 10.8 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|435850519|ref|YP_007312105.1| - 0.074 13.4 12.1 0.2 12.0 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435850519|ref|YP_007312105.1| - 0.078 12.8 1.2 0.078 12.8 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Smoothelin PF12510.3 gi|435850519|ref|YP_007312105.1| - 0.23 11.3 1.2 0.61 9.9 0.2 2.1 2 0 0 2 2 2 0 Smoothelin cytoskeleton protein Fer4_3 PF12798.2 gi|435850519|ref|YP_007312105.1| - 0.46 11.1 15.6 0.73 10.5 1.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435850519|ref|YP_007312105.1| - 5.9 7.3 10.9 14 6.1 1.6 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain Gln-synt_C PF00120.19 gi|435850520|ref|YP_007312106.1| - 4.4e-98 327.5 0.0 5.5e-98 327.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|435850520|ref|YP_007312106.1| - 6.5e-29 99.3 0.0 1.1e-28 98.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain GATase_2 PF00310.16 gi|435850521|ref|YP_007312107.1| - 5.4e-23 81.2 0.0 4.4e-22 78.2 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|435850521|ref|YP_007312107.1| - 1.1e-18 67.5 0.0 5e-18 65.3 0.0 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|435850521|ref|YP_007312107.1| - 1.7e-12 47.1 0.0 2.2e-11 43.5 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|435850521|ref|YP_007312107.1| - 0.17 10.5 0.0 0.25 9.9 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II NADPH_Ox PF08414.5 gi|435850521|ref|YP_007312107.1| - 0.19 11.8 0.0 0.38 10.8 0.0 1.5 1 0 0 1 1 1 0 Respiratory burst NADPH oxidase Glu_synthase PF01645.12 gi|435850522|ref|YP_007312108.1| - 1.9e-133 444.9 0.0 3e-133 444.2 0.0 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase Fer4_10 PF13237.1 gi|435850522|ref|YP_007312108.1| - 1.3e-10 40.8 23.6 5e-07 29.4 9.6 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Glu_syn_central PF04898.9 gi|435850522|ref|YP_007312108.1| - 1.4e-10 40.9 0.2 6.5e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.13 gi|435850522|ref|YP_007312108.1| - 1.3e-09 37.4 6.1 6.9e-08 31.7 1.5 3.1 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Fer4_7 PF12838.2 gi|435850522|ref|YP_007312108.1| - 2.4e-09 37.4 14.9 7.7e-08 32.5 6.9 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain IMPDH PF00478.20 gi|435850522|ref|YP_007312108.1| - 7.7e-09 34.8 1.0 5.5e-07 28.7 1.7 2.6 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4 PF00037.22 gi|435850522|ref|YP_007312108.1| - 4.6e-08 32.3 20.0 5.7e-06 25.6 1.0 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435850522|ref|YP_007312108.1| - 1.2e-07 31.9 19.1 1.2e-07 31.8 8.4 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435850522|ref|YP_007312108.1| - 4.6e-07 29.4 22.9 4.2e-06 26.4 1.8 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435850522|ref|YP_007312108.1| - 8.8e-07 29.5 12.7 8.4e-05 23.2 0.3 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain NMO PF03060.10 gi|435850522|ref|YP_007312108.1| - 1e-06 28.1 3.9 1e-06 28.1 2.7 1.5 2 0 0 2 2 2 1 Nitronate monooxygenase Fer4_21 PF14697.1 gi|435850522|ref|YP_007312108.1| - 4.1e-06 26.5 10.7 4.1e-06 26.5 7.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435850522|ref|YP_007312108.1| - 5.3e-06 26.6 8.6 0.043 14.1 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435850522|ref|YP_007312108.1| - 1.2e-05 24.9 23.0 0.00017 21.2 1.8 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435850522|ref|YP_007312108.1| - 8.4e-05 22.5 17.2 0.052 13.5 1.8 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain DHO_dh PF01180.16 gi|435850522|ref|YP_007312108.1| - 0.00023 20.2 2.8 0.0021 17.1 1.9 2.1 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|435850522|ref|YP_007312108.1| - 0.0022 17.2 0.3 0.0045 16.2 0.2 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_11 PF13247.1 gi|435850522|ref|YP_007312108.1| - 0.0059 16.4 6.5 0.0059 16.4 4.5 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain PcrB PF01884.12 gi|435850522|ref|YP_007312108.1| - 0.012 14.8 0.7 0.54 9.4 0.3 2.4 1 1 1 2 2 2 0 PcrB family Fer4_4 PF12800.2 gi|435850522|ref|YP_007312108.1| - 0.044 14.1 2.3 0.044 14.1 1.6 4.1 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435850522|ref|YP_007312108.1| - 0.054 13.9 17.0 0.32 11.4 1.0 3.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435850522|ref|YP_007312108.1| - 3.6 8.2 21.7 0.09 13.3 1.4 3.3 2 1 1 3 3 2 0 4Fe-4S single cluster domain GXGXG PF01493.14 gi|435850523|ref|YP_007312109.1| - 7.2e-32 110.0 11.4 8.5e-32 109.7 7.9 1.0 1 0 0 1 1 1 1 GXGXG motif FrhB_FdhB_C PF04432.8 gi|435850524|ref|YP_007312110.1| - 1.3e-39 135.2 1.6 1.6e-39 134.8 0.0 1.9 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|435850524|ref|YP_007312110.1| - 7.1e-21 73.8 0.0 1.3e-20 73.0 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.1 gi|435850524|ref|YP_007312110.1| - 2.5e-06 27.1 8.9 2.5e-06 27.1 6.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435850524|ref|YP_007312110.1| - 5e-06 25.8 5.2 5e-06 25.8 3.6 3.3 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435850524|ref|YP_007312110.1| - 2.8e-05 24.3 9.6 2.8e-05 24.3 6.6 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435850524|ref|YP_007312110.1| - 3.4e-05 23.5 4.4 3.4e-05 23.5 3.1 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435850524|ref|YP_007312110.1| - 3.5e-05 23.9 9.0 3.5e-05 23.9 6.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435850524|ref|YP_007312110.1| - 0.00013 22.0 18.6 0.017 15.4 1.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435850524|ref|YP_007312110.1| - 0.00067 19.4 4.7 0.00067 19.4 3.2 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435850524|ref|YP_007312110.1| - 0.0059 17.3 15.9 0.057 14.1 8.8 3.0 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|435850524|ref|YP_007312110.1| - 0.011 16.1 0.9 0.011 16.1 0.6 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435850524|ref|YP_007312110.1| - 0.031 14.2 13.9 0.096 12.7 1.9 2.7 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|435850524|ref|YP_007312110.1| - 0.11 12.4 5.6 3 7.7 2.5 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435850524|ref|YP_007312110.1| - 0.35 11.2 12.5 0.25 11.7 1.3 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435850524|ref|YP_007312110.1| - 0.36 10.7 15.5 2.3 8.1 8.1 3.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435850524|ref|YP_007312110.1| - 0.55 10.6 10.1 0.95 9.8 1.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|435850524|ref|YP_007312110.1| - 3.7 8.1 10.1 0.54 10.8 1.0 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain DUF2933 PF11666.3 gi|435850525|ref|YP_007312111.1| - 0.14 11.7 1.1 0.25 10.9 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2933) Gln-synt_C PF00120.19 gi|435850526|ref|YP_007312112.1| - 2e-97 325.3 0.0 2.6e-97 325.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|435850526|ref|YP_007312112.1| - 2.8e-31 106.9 0.0 6.6e-31 105.7 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain HTH_24 PF13412.1 gi|435850528|ref|YP_007312114.1| - 0.00022 20.5 0.1 0.00078 18.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|435850528|ref|YP_007312114.1| - 0.00049 19.7 0.4 0.0046 16.6 0.0 2.4 2 0 0 2 2 2 1 MarR family FeoC PF09012.5 gi|435850528|ref|YP_007312114.1| - 0.0032 17.1 1.3 0.0093 15.6 0.1 2.1 2 0 0 2 2 2 1 FeoC like transcriptional regulator DUF4480 PF13715.1 gi|435850528|ref|YP_007312114.1| - 0.0072 16.3 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) DUF843 PF05814.6 gi|435850528|ref|YP_007312114.1| - 0.029 14.1 0.1 0.086 12.6 0.0 1.7 1 0 0 1 1 1 0 Baculovirus protein of unknown function (DUF843) HTH_27 PF13463.1 gi|435850528|ref|YP_007312114.1| - 0.041 14.2 0.1 0.19 12.0 0.0 2.1 3 0 0 3 3 2 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|435850528|ref|YP_007312114.1| - 0.046 13.4 0.0 0.092 12.4 0.0 1.4 1 0 0 1 1 1 0 MarR family HemY_N PF07219.8 gi|435850528|ref|YP_007312114.1| - 0.05 13.1 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 HemY protein N-terminus TrmB PF01978.14 gi|435850528|ref|YP_007312114.1| - 0.079 12.6 0.0 0.24 11.1 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|435850528|ref|YP_007312114.1| - 0.26 11.1 1.0 22 4.9 0.0 3.0 2 1 1 3 3 3 0 Winged helix-turn-helix Co_AT_N PF12557.3 gi|435850528|ref|YP_007312114.1| - 0.89 9.5 5.2 1.6 8.6 3.6 1.4 1 0 0 1 1 1 0 Cob(I)alamin adenosyltransferase N terminal CARDB PF07705.6 gi|435850529|ref|YP_007312115.1| - 5e-10 39.3 10.3 0.0051 16.8 0.4 3.3 3 0 0 3 3 3 3 CARDB NPCBM_assoc PF10633.4 gi|435850529|ref|YP_007312115.1| - 7.2e-08 32.3 2.7 0.071 13.1 0.0 5.0 3 2 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4625 PF15418.1 gi|435850529|ref|YP_007312115.1| - 7.2e-06 26.1 0.1 0.00021 21.3 0.0 2.8 2 1 1 3 3 3 1 Domain of unknown function (DUF4625) DUF11 PF01345.13 gi|435850529|ref|YP_007312115.1| - 9e-05 22.4 1.0 0.083 12.9 0.0 3.6 3 0 0 3 3 3 1 Domain of unknown function DUF11 DUF2393 PF09624.5 gi|435850529|ref|YP_007312115.1| - 0.0031 17.0 0.9 2 7.9 0.0 3.3 3 0 0 3 3 3 1 Protein of unknown function (DUF2393) TRAP_beta PF05753.9 gi|435850529|ref|YP_007312115.1| - 0.0063 15.6 1.6 0.092 11.9 0.3 2.7 2 1 0 2 2 2 1 Translocon-associated protein beta (TRAPB) Y_Y_Y PF07495.8 gi|435850529|ref|YP_007312115.1| - 0.024 14.4 0.9 16 5.3 0.0 3.6 3 0 0 3 3 3 0 Y_Y_Y domain A2M_N PF01835.14 gi|435850529|ref|YP_007312115.1| - 0.038 14.2 0.1 0.65 10.2 0.0 2.5 2 1 0 2 2 2 0 MG2 domain DUF4469 PF14734.1 gi|435850529|ref|YP_007312115.1| - 0.039 13.8 3.3 0.34 10.8 0.1 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4469) with IG-like fold CBM-like PF14683.1 gi|435850529|ref|YP_007312115.1| - 0.041 13.5 0.4 0.74 9.4 0.1 2.5 2 1 0 2 2 2 0 Polysaccharide lyase family 4, domain III DUF4397 PF14344.1 gi|435850529|ref|YP_007312115.1| - 0.074 13.3 3.9 0.6 10.4 1.3 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4397) He_PIG PF05345.7 gi|435850529|ref|YP_007312115.1| - 0.13 12.3 3.3 7.7 6.6 0.1 3.8 3 0 0 3 3 3 0 Putative Ig domain DUF3316 PF11777.3 gi|435850529|ref|YP_007312115.1| - 0.17 11.6 3.2 11 5.8 0.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3316) Rieske PF00355.21 gi|435850530|ref|YP_007312116.1| - 2.4e-21 75.0 0.0 2.7e-21 74.9 0.0 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|435850530|ref|YP_007312116.1| - 8.5e-11 41.5 0.0 9.6e-11 41.3 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Rieske PF00355.21 gi|435850531|ref|YP_007312117.1| - 5.7e-17 61.0 0.0 6.6e-17 60.8 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|435850531|ref|YP_007312117.1| - 8.8e-17 60.7 0.0 1e-16 60.5 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Complex1_49kDa PF00346.14 gi|435850531|ref|YP_007312117.1| - 0.051 12.5 0.0 0.051 12.5 0.0 1.0 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Glutaredoxin PF00462.19 gi|435850532|ref|YP_007312118.1| - 3.4e-10 39.7 0.1 4.4e-10 39.4 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin ArsC PF03960.10 gi|435850532|ref|YP_007312118.1| - 9e-07 28.9 0.4 2.4e-05 24.3 0.1 2.0 1 1 1 2 2 2 1 ArsC family GST_N_3 PF13417.1 gi|435850532|ref|YP_007312118.1| - 0.00023 21.3 0.0 0.00026 21.1 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF1462 PF07315.6 gi|435850532|ref|YP_007312118.1| - 0.0052 16.7 0.0 0.0059 16.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1462) GST_N_2 PF13409.1 gi|435850532|ref|YP_007312118.1| - 0.016 15.2 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain FeThRed_B PF02943.10 gi|435850533|ref|YP_007312119.1| - 9.6e-13 47.8 1.8 1.2e-12 47.5 1.2 1.1 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Arif-1 PF06770.6 gi|435850533|ref|YP_007312119.1| - 0.13 11.5 0.2 0.17 11.1 0.1 1.2 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) PAS_9 PF13426.1 gi|435850534|ref|YP_007312120.1| - 1.6e-59 198.7 5.2 5.4e-13 49.2 0.1 5.3 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|435850534|ref|YP_007312120.1| - 5.8e-50 167.8 1.8 1.7e-14 53.5 0.0 5.3 5 0 0 5 5 5 4 PAS fold PAS_4 PF08448.5 gi|435850534|ref|YP_007312120.1| - 2e-37 127.5 0.0 4.3e-11 42.8 0.0 5.3 5 0 0 5 5 5 5 PAS fold HATPase_c PF02518.21 gi|435850534|ref|YP_007312120.1| - 9.3e-35 118.7 0.1 2.8e-34 117.1 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|435850534|ref|YP_007312120.1| - 1.5e-34 116.7 0.3 7.3e-10 38.3 0.0 5.6 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.6 gi|435850534|ref|YP_007312120.1| - 6.4e-27 93.4 0.6 1.7e-11 44.0 0.1 5.5 5 0 0 5 5 5 5 PAS fold HisKA PF00512.20 gi|435850534|ref|YP_007312120.1| - 3.1e-18 65.5 0.6 5.6e-17 61.4 0.0 3.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|435850534|ref|YP_007312120.1| - 2e-06 27.5 0.0 6.4e-06 25.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|435850534|ref|YP_007312120.1| - 4.8e-05 23.5 0.5 0.51 10.6 0.1 3.0 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.1 gi|435850534|ref|YP_007312120.1| - 0.0039 16.8 0.0 0.012 15.2 0.0 1.9 1 0 0 1 1 1 1 GHKL domain N6_Mtase PF02384.11 gi|435850535|ref|YP_007312121.1| - 3.3e-67 226.7 0.0 4.7e-67 226.2 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|435850535|ref|YP_007312121.1| - 8e-14 52.2 0.3 1e-12 48.6 0.0 2.7 2 1 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|435850535|ref|YP_007312121.1| - 1.7e-10 40.9 0.0 3.4e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|435850535|ref|YP_007312121.1| - 5.4e-06 26.0 0.0 1.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|435850535|ref|YP_007312121.1| - 0.00051 20.3 0.0 0.0034 17.7 0.0 2.2 2 0 0 2 2 2 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|435850535|ref|YP_007312121.1| - 0.066 12.5 0.0 0.53 9.6 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase small domain FMN_red PF03358.10 gi|435850536|ref|YP_007312122.1| - 2.5e-26 91.9 0.0 3.6e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|435850536|ref|YP_007312122.1| - 1.1e-15 57.6 0.0 1.6e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|435850536|ref|YP_007312122.1| - 0.0061 16.5 0.0 0.12 12.3 0.0 2.3 2 0 0 2 2 2 1 Flavodoxin domain Methylase_S PF01420.14 gi|435850537|ref|YP_007312123.1| - 3.3e-31 108.5 0.8 1.1e-15 57.9 0.1 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Heme_oxygenase PF01126.15 gi|435850537|ref|YP_007312123.1| - 0.088 12.3 0.6 0.16 11.4 0.4 1.4 1 0 0 1 1 1 0 Heme oxygenase DUF4558 PF15104.1 gi|435850537|ref|YP_007312123.1| - 5.2 7.0 7.8 4 7.4 0.8 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4558) HATPase_c_4 PF13749.1 gi|435850538|ref|YP_007312124.1| - 2e-20 72.3 0.0 5.9e-20 70.8 0.0 1.9 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|435850538|ref|YP_007312124.1| - 4.7e-16 59.0 0.3 1.3e-15 57.5 0.0 1.9 2 0 0 2 2 2 1 Divergent AAA domain HTH_24 PF13412.1 gi|435850538|ref|YP_007312124.1| - 2.5e-08 33.1 1.2 2.2e-07 30.1 0.2 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|435850538|ref|YP_007312124.1| - 0.0009 18.9 0.1 0.0052 16.5 0.0 2.4 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|435850538|ref|YP_007312124.1| - 0.0069 16.0 0.0 0.035 13.7 0.0 2.1 2 0 0 2 2 2 1 MarR family FaeA PF04703.7 gi|435850538|ref|YP_007312124.1| - 0.0076 16.3 0.0 0.026 14.6 0.0 1.9 2 0 0 2 2 2 1 FaeA-like protein ResIII PF04851.10 gi|435850539|ref|YP_007312125.1| - 6.4e-42 143.4 0.0 1.5e-41 142.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit EcoEI_R_C PF08463.5 gi|435850539|ref|YP_007312125.1| - 1.7e-38 132.0 2.5 6.4e-38 130.1 1.7 2.1 1 0 0 1 1 1 1 EcoEI R protein C-terminal DEAD PF00270.24 gi|435850539|ref|YP_007312125.1| - 2.9e-10 39.9 0.0 4e-09 36.1 0.0 2.8 2 1 0 2 2 2 1 DEAD/DEAH box helicase HSDR_N PF04313.9 gi|435850539|ref|YP_007312125.1| - 2.3e-07 30.7 1.6 1.7e-05 24.6 0.0 3.5 3 1 1 4 4 4 1 Type I restriction enzyme R protein N terminus (HSDR_N) SNF2_N PF00176.18 gi|435850539|ref|YP_007312125.1| - 0.00015 20.6 0.0 0.00033 19.5 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain FtsK_SpoIIIE PF01580.13 gi|435850539|ref|YP_007312125.1| - 0.0016 17.9 0.0 0.005 16.3 0.0 1.8 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|435850539|ref|YP_007312125.1| - 0.0032 17.1 0.0 0.0085 15.8 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Zot PF05707.7 gi|435850539|ref|YP_007312125.1| - 0.0038 16.7 0.6 0.33 10.3 0.2 3.2 2 1 0 2 2 2 1 Zonular occludens toxin (Zot) N6_N4_Mtase PF01555.13 gi|435850540|ref|YP_007312126.1| - 1.5e-31 109.6 2.2 2.1e-31 109.2 1.6 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|435850540|ref|YP_007312126.1| - 4.2e-05 23.5 0.0 8.7e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435850540|ref|YP_007312126.1| - 0.12 11.7 0.0 0.31 10.4 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase small domain DUF128 PF01995.11 gi|435850541|ref|YP_007312127.1| - 8.6e-86 286.7 1.6 1e-85 286.4 1.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|435850541|ref|YP_007312127.1| - 1.5e-30 104.6 1.5 4.7e-30 103.1 1.0 1.9 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain NMT1_2 PF13379.1 gi|435850541|ref|YP_007312127.1| - 0.03 13.6 0.0 0.051 12.9 0.0 1.3 1 0 0 1 1 1 0 NMT1-like family Ribosomal_S19e PF01090.14 gi|435850541|ref|YP_007312127.1| - 0.033 13.6 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e Imm46 PF15585.1 gi|435850541|ref|YP_007312127.1| - 0.035 14.1 0.1 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 Immunity protein 46 DUF1108 PF06531.6 gi|435850541|ref|YP_007312127.1| - 0.054 13.6 0.6 0.43 10.7 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1108) DUF3303 PF11746.3 gi|435850542|ref|YP_007312128.1| - 1.1e-07 32.0 0.0 1.3e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) Phasin PF05597.6 gi|435850544|ref|YP_007312130.1| - 2.2e-05 24.2 10.2 2.2e-05 24.2 7.1 2.5 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) BMFP PF04380.8 gi|435850544|ref|YP_007312130.1| - 0.0027 17.7 8.1 0.0027 17.7 5.6 1.9 1 1 1 2 2 2 1 Membrane fusogenic activity DUF3288 PF11691.3 gi|435850544|ref|YP_007312130.1| - 0.063 13.0 2.7 0.4 10.4 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3288) Raftlin PF15250.1 gi|435850544|ref|YP_007312130.1| - 0.13 10.7 9.4 0.14 10.6 6.5 1.0 1 0 0 1 1 1 0 Raftlin YchF-GTPase_C PF06071.8 gi|435850544|ref|YP_007312130.1| - 0.15 11.8 1.5 0.25 11.1 0.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF933) Allexi_40kDa PF05549.6 gi|435850544|ref|YP_007312130.1| - 0.17 11.1 7.5 0.18 11.0 5.2 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3349 PF11829.3 gi|435850544|ref|YP_007312130.1| - 0.31 11.4 2.1 0.37 11.2 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3349) DUF87 PF01935.12 gi|435850544|ref|YP_007312130.1| - 0.45 10.3 9.2 0.51 10.1 6.4 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF87 PRESAN PF09687.5 gi|435850544|ref|YP_007312130.1| - 0.57 10.2 16.4 0.92 9.5 11.3 1.4 1 1 0 1 1 1 0 Plasmodium RESA N-terminal DUF883 PF05957.8 gi|435850544|ref|YP_007312130.1| - 0.64 10.4 8.9 1.5 9.2 2.7 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) YfcL PF08891.6 gi|435850544|ref|YP_007312130.1| - 0.72 9.8 6.6 0.34 10.8 2.7 1.8 1 1 1 2 2 2 0 YfcL protein EBV-NA3 PF05009.7 gi|435850544|ref|YP_007312130.1| - 1 8.5 5.2 1.4 8.1 3.6 1.2 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) KIP1 PF07765.7 gi|435850544|ref|YP_007312130.1| - 1.4 8.7 10.8 1.4 8.7 1.1 2.2 1 1 1 2 2 2 0 KIP1-like protein ATP-synt_B PF00430.13 gi|435850544|ref|YP_007312130.1| - 1.5 8.6 17.6 1.4 8.7 11.4 1.5 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) RNA_pol_Rpb1_1 PF04997.7 gi|435850544|ref|YP_007312130.1| - 2.2 7.4 14.5 2.2 7.4 10.1 1.0 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 1 Band_3_cyto PF07565.8 gi|435850544|ref|YP_007312130.1| - 3.2 7.1 9.1 3.6 7.0 6.3 1.0 1 0 0 1 1 1 0 Band 3 cytoplasmic domain PA26 PF04636.8 gi|435850544|ref|YP_007312130.1| - 4.8 5.7 10.0 6.1 5.4 7.0 1.3 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) TALPID3 PF15324.1 gi|435850544|ref|YP_007312130.1| - 5.5 4.2 17.0 6.7 3.9 11.8 1.0 1 0 0 1 1 1 0 Hedgehog signalling target DDHD PF02862.12 gi|435850544|ref|YP_007312130.1| - 5.9 6.6 9.4 7.2 6.3 6.5 1.1 1 0 0 1 1 1 0 DDHD domain ACCA PF03255.9 gi|435850544|ref|YP_007312130.1| - 6 6.3 10.8 3 7.3 5.1 1.7 1 1 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABC_tran PF00005.22 gi|435850545|ref|YP_007312131.1| - 8e-57 191.3 0.0 1.7e-27 96.3 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|435850545|ref|YP_007312131.1| - 5.8e-15 56.0 4.9 2.1e-06 27.9 0.3 4.1 2 2 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|435850545|ref|YP_007312131.1| - 2e-11 43.5 6.4 0.00051 19.2 0.5 4.3 3 1 0 4 4 4 4 AAA ATPase domain DUF258 PF03193.11 gi|435850545|ref|YP_007312131.1| - 3.7e-10 39.2 0.7 6.9e-05 22.0 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|435850545|ref|YP_007312131.1| - 2.2e-09 38.1 0.1 0.0018 19.0 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|435850545|ref|YP_007312131.1| - 1.9e-08 33.7 2.8 0.0032 16.9 0.3 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|435850545|ref|YP_007312131.1| - 3.9e-08 33.0 0.1 0.0025 17.6 0.0 4.6 3 2 0 3 3 3 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|435850545|ref|YP_007312131.1| - 1.5e-07 30.8 0.7 0.01 15.0 0.0 3.9 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|435850545|ref|YP_007312131.1| - 2.7e-07 30.7 0.6 0.024 14.6 0.1 3.2 3 1 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|435850545|ref|YP_007312131.1| - 2.8e-07 30.7 4.3 0.09 12.9 0.0 4.6 4 1 0 4 4 4 2 AAA domain AAA_23 PF13476.1 gi|435850545|ref|YP_007312131.1| - 5.2e-07 30.1 4.4 0.0019 18.5 0.3 2.7 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|435850545|ref|YP_007312131.1| - 5.8e-07 29.1 0.2 0.63 9.4 0.0 4.2 4 0 0 4 4 4 2 AAA domain AAA_18 PF13238.1 gi|435850545|ref|YP_007312131.1| - 1.1e-06 28.9 1.1 0.0084 16.4 0.0 3.4 2 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|435850545|ref|YP_007312131.1| - 3.6e-06 26.6 1.2 0.7 9.2 0.7 4.0 3 1 0 3 3 3 2 AAA-like domain Miro PF08477.8 gi|435850545|ref|YP_007312131.1| - 4.4e-05 23.9 0.5 1.1 9.7 0.0 3.9 4 0 0 4 4 3 2 Miro-like protein UPF0079 PF02367.12 gi|435850545|ref|YP_007312131.1| - 5.8e-05 22.7 0.6 0.013 15.0 0.0 2.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|435850545|ref|YP_007312131.1| - 6e-05 22.0 0.3 0.3 9.9 0.1 2.7 2 0 0 2 2 2 2 NB-ARC domain MobB PF03205.9 gi|435850545|ref|YP_007312131.1| - 9.9e-05 22.0 0.7 0.37 10.4 0.1 2.6 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|435850545|ref|YP_007312131.1| - 0.00013 21.6 0.4 0.59 9.6 0.0 3.0 3 0 0 3 3 3 2 AAA domain Zeta_toxin PF06414.7 gi|435850545|ref|YP_007312131.1| - 0.00033 19.8 0.0 0.096 11.7 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin PRK PF00485.13 gi|435850545|ref|YP_007312131.1| - 0.00037 20.1 0.0 0.23 10.9 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.1 gi|435850545|ref|YP_007312131.1| - 0.00039 20.3 0.2 3.5 7.5 0.0 4.0 4 1 0 4 4 4 0 AAA domain ArgK PF03308.11 gi|435850545|ref|YP_007312131.1| - 0.00045 19.0 0.3 0.029 13.1 0.0 2.3 2 0 0 2 2 2 1 ArgK protein T2SE PF00437.15 gi|435850545|ref|YP_007312131.1| - 0.0005 19.0 0.3 0.37 9.6 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|435850545|ref|YP_007312131.1| - 0.00092 18.9 2.8 0.27 10.8 0.1 3.7 3 2 1 4 4 4 1 Archaeal ATPase PduV-EutP PF10662.4 gi|435850545|ref|YP_007312131.1| - 0.001 18.6 0.6 0.095 12.1 0.1 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA PF00004.24 gi|435850545|ref|YP_007312131.1| - 0.001 19.2 0.1 14 5.9 0.0 4.9 5 1 0 5 5 5 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|435850545|ref|YP_007312131.1| - 0.0011 18.6 4.2 0.22 11.1 0.2 2.5 2 0 0 2 2 2 2 NACHT domain MMR_HSR1 PF01926.18 gi|435850545|ref|YP_007312131.1| - 0.0013 18.7 0.1 2 8.4 0.0 3.2 3 0 0 3 3 3 1 50S ribosome-binding GTPase cobW PF02492.14 gi|435850545|ref|YP_007312131.1| - 0.0019 17.6 1.1 1.8 7.9 0.2 2.5 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|435850545|ref|YP_007312131.1| - 0.0034 17.0 0.2 3.4 7.4 0.0 3.2 3 0 0 3 3 3 0 Part of AAA domain AAA_33 PF13671.1 gi|435850545|ref|YP_007312131.1| - 0.0035 17.2 0.2 1.8 8.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|435850545|ref|YP_007312131.1| - 0.0038 17.3 0.1 0.86 9.8 0.0 2.9 3 0 0 3 3 2 1 RNA helicase KAP_NTPase PF07693.9 gi|435850545|ref|YP_007312131.1| - 0.0039 16.2 0.3 0.59 9.0 0.0 2.6 2 1 0 2 2 2 1 KAP family P-loop domain G-alpha PF00503.15 gi|435850545|ref|YP_007312131.1| - 0.0082 14.8 0.0 0.65 8.6 0.0 2.4 2 0 0 2 2 2 1 G-protein alpha subunit NTPase_1 PF03266.10 gi|435850545|ref|YP_007312131.1| - 0.013 15.2 1.3 1.6 8.4 0.1 2.9 2 0 0 2 2 2 0 NTPase KaiC PF06745.8 gi|435850545|ref|YP_007312131.1| - 0.015 14.4 1.0 8.8 5.3 0.0 3.2 3 0 0 3 3 3 0 KaiC PhoH PF02562.11 gi|435850545|ref|YP_007312131.1| - 0.016 14.4 0.1 7.3 5.7 0.0 3.2 3 0 0 3 3 3 0 PhoH-like protein APS_kinase PF01583.15 gi|435850545|ref|YP_007312131.1| - 0.017 14.8 0.1 7.3 6.2 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase DUF87 PF01935.12 gi|435850545|ref|YP_007312131.1| - 0.018 14.8 4.1 2.4 7.9 0.2 2.8 2 1 0 2 2 2 0 Domain of unknown function DUF87 AAA_28 PF13521.1 gi|435850545|ref|YP_007312131.1| - 0.018 15.0 0.3 7.9 6.4 0.0 2.8 3 0 0 3 3 2 0 AAA domain PIF1 PF05970.9 gi|435850545|ref|YP_007312131.1| - 0.018 14.0 0.1 5.5 5.8 0.0 3.1 3 0 0 3 3 3 0 PIF1-like helicase AAA_24 PF13479.1 gi|435850545|ref|YP_007312131.1| - 0.02 14.4 2.2 1.2 8.7 0.0 3.0 4 0 0 4 4 2 0 AAA domain AAA_5 PF07728.9 gi|435850545|ref|YP_007312131.1| - 0.03 14.0 1.3 3.2 7.4 0.0 3.4 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF927 PF06048.6 gi|435850545|ref|YP_007312131.1| - 0.08 12.1 0.2 4.5 6.4 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF927) VirE PF05272.6 gi|435850545|ref|YP_007312131.1| - 0.081 12.3 0.1 0.71 9.3 0.0 2.2 2 0 0 2 2 2 0 Virulence-associated protein E Pox_A32 PF04665.7 gi|435850545|ref|YP_007312131.1| - 0.085 12.1 2.6 2.3 7.4 0.1 2.8 3 0 0 3 3 3 0 Poxvirus A32 protein Mg_chelatase PF01078.16 gi|435850545|ref|YP_007312131.1| - 0.088 11.9 0.1 1.8 7.6 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI GTP_EFTU PF00009.22 gi|435850545|ref|YP_007312131.1| - 0.14 11.5 0.8 25 4.2 0.0 3.3 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain FtsK_SpoIIIE PF01580.13 gi|435850545|ref|YP_007312131.1| - 0.21 11.0 0.7 11 5.4 0.1 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family ABC_ATPase PF09818.4 gi|435850545|ref|YP_007312131.1| - 2.1 6.8 6.5 11 4.4 0.1 3.3 5 0 0 5 5 5 0 Predicted ATPase of the ABC class PcrB PF01884.12 gi|435850546|ref|YP_007312132.1| - 3.3e-81 271.9 1.0 3.9e-81 271.6 0.7 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|435850546|ref|YP_007312132.1| - 1.2e-05 24.7 0.2 2.2e-05 23.8 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.9 gi|435850546|ref|YP_007312132.1| - 0.00032 19.7 2.0 0.15 11.0 0.1 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.15 gi|435850546|ref|YP_007312132.1| - 0.0007 18.2 0.2 0.019 13.5 0.1 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain Ribul_P_3_epim PF00834.14 gi|435850546|ref|YP_007312132.1| - 0.064 12.3 0.1 0.11 11.5 0.1 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.12 gi|435850546|ref|YP_007312132.1| - 0.074 12.1 0.0 0.18 10.9 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI MlrC_C PF07171.7 gi|435850546|ref|YP_007312132.1| - 0.14 11.7 4.1 2.2 7.8 0.3 2.2 2 0 0 2 2 2 0 MlrC C-terminus ThiG PF05690.9 gi|435850546|ref|YP_007312132.1| - 0.52 9.3 8.0 0.12 11.4 0.4 2.4 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG Ribosomal_L40e PF01020.12 gi|435850547|ref|YP_007312133.1| - 0.00029 20.3 8.2 0.00036 20.0 5.7 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|435850547|ref|YP_007312133.1| - 0.0012 18.5 2.2 0.0015 18.3 1.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-DHHC PF01529.15 gi|435850547|ref|YP_007312133.1| - 0.0065 15.8 2.1 0.007 15.7 1.4 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase zf-RanBP PF00641.13 gi|435850547|ref|YP_007312133.1| - 0.0097 15.0 3.5 0.013 14.6 2.4 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zinc_ribbon_2 PF13240.1 gi|435850547|ref|YP_007312133.1| - 0.014 14.8 0.4 0.023 14.1 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|435850547|ref|YP_007312133.1| - 0.019 14.9 1.6 0.022 14.8 1.1 1.1 1 0 0 1 1 1 0 DnaJ central domain zf-ribbon_3 PF13248.1 gi|435850547|ref|YP_007312133.1| - 0.033 13.4 1.6 0.043 13.0 1.1 1.2 1 0 0 1 1 1 0 zinc-ribbon domain FYVE PF01363.16 gi|435850547|ref|YP_007312133.1| - 0.1 12.5 2.7 0.12 12.3 1.9 1.2 1 0 0 1 1 1 0 FYVE zinc finger HypA PF01155.14 gi|435850547|ref|YP_007312133.1| - 0.15 11.7 1.7 0.18 11.5 1.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|435850547|ref|YP_007312133.1| - 0.25 10.8 8.6 0.2 11.1 4.3 2.0 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF2082 PF09855.4 gi|435850547|ref|YP_007312133.1| - 0.74 9.7 4.2 7.4 6.4 0.2 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn-ribbon_8 PF09723.5 gi|435850547|ref|YP_007312133.1| - 1.6 8.7 4.3 45 4.1 3.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain GatB_N PF02934.10 gi|435850548|ref|YP_007312134.1| - 3e-112 374.2 0.0 3.9e-112 373.8 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|435850548|ref|YP_007312134.1| - 5.7e-39 133.1 0.6 1e-38 132.3 0.4 1.4 1 0 0 1 1 1 1 GatB domain Pathogen_betaC1 PF09593.5 gi|435850548|ref|YP_007312134.1| - 0.08 12.6 0.9 0.19 11.4 0.1 2.0 2 0 0 2 2 2 0 Beta-satellite pathogenicity beta C1 protein Amidase PF01425.16 gi|435850549|ref|YP_007312135.1| - 7.4e-155 516.1 0.0 8.4e-155 515.9 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|435850550|ref|YP_007312136.1| - 6.9e-25 86.6 0.5 8.6e-25 86.3 0.4 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit TcdA_TcdB_pore PF12920.2 gi|435850550|ref|YP_007312136.1| - 0.12 10.2 0.1 0.15 9.9 0.0 1.0 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain Methyltransf_11 PF08241.7 gi|435850551|ref|YP_007312137.1| - 2e-18 66.6 0.0 3.7e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|435850551|ref|YP_007312137.1| - 4.2e-16 59.0 0.0 5.3e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435850551|ref|YP_007312137.1| - 1.5e-12 47.3 0.0 1.8e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|435850551|ref|YP_007312137.1| - 1.6e-12 47.0 0.0 1.9e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|435850551|ref|YP_007312137.1| - 3.4e-12 46.5 0.1 6.5e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435850551|ref|YP_007312137.1| - 7.9e-12 45.7 0.1 1.1e-11 45.2 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|435850551|ref|YP_007312137.1| - 1.6e-08 34.9 0.0 2.3e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435850551|ref|YP_007312137.1| - 7.5e-07 29.2 0.0 1.1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435850551|ref|YP_007312137.1| - 8.8e-06 25.2 0.0 1.4e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|435850551|ref|YP_007312137.1| - 0.00014 21.5 0.0 0.00022 20.9 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.6 gi|435850551|ref|YP_007312137.1| - 0.0017 17.7 0.0 0.0024 17.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|435850551|ref|YP_007312137.1| - 0.0063 15.7 0.0 0.014 14.5 0.0 1.6 1 1 0 1 1 1 1 Tellurite resistance protein TehB CheR PF01739.13 gi|435850551|ref|YP_007312137.1| - 0.052 12.8 0.0 2.6 7.2 0.0 2.4 1 1 0 2 2 2 0 CheR methyltransferase, SAM binding domain UPF0146 PF03686.8 gi|435850551|ref|YP_007312137.1| - 0.1 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) NNMT_PNMT_TEMT PF01234.12 gi|435850551|ref|YP_007312137.1| - 0.13 11.2 0.0 2.8 6.8 0.0 2.6 2 1 1 3 3 3 0 NNMT/PNMT/TEMT family DUF3746 PF12562.3 gi|435850551|ref|YP_007312137.1| - 0.14 12.0 0.5 0.26 11.1 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3746) NIR_SIR PF01077.17 gi|435850552|ref|YP_007312138.1| - 3.8e-37 127.0 1.4 5.5e-37 126.5 1.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|435850552|ref|YP_007312138.1| - 1.6e-19 69.3 0.0 4.6e-19 67.8 0.0 1.7 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|435850552|ref|YP_007312138.1| - 7e-13 47.5 14.3 4e-07 29.3 2.0 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435850552|ref|YP_007312138.1| - 6.5e-08 32.1 13.8 1.7e-06 27.5 2.6 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435850552|ref|YP_007312138.1| - 1.2e-07 31.9 12.8 1.2e-07 31.9 8.9 3.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435850552|ref|YP_007312138.1| - 3.8e-07 29.8 12.9 3.8e-07 29.8 8.9 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435850552|ref|YP_007312138.1| - 5.1e-07 29.4 20.2 0.00013 21.7 1.0 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435850552|ref|YP_007312138.1| - 2.4e-05 24.5 21.0 0.0064 16.7 0.6 3.2 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435850552|ref|YP_007312138.1| - 2.7e-05 24.1 12.6 0.032 14.2 0.0 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435850552|ref|YP_007312138.1| - 0.0004 20.8 15.0 0.0018 18.7 0.1 4.3 4 1 0 4 4 4 1 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|435850552|ref|YP_007312138.1| - 0.0017 18.1 3.5 0.0017 18.1 2.4 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435850552|ref|YP_007312138.1| - 0.0018 18.9 5.7 0.041 14.6 0.8 3.4 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|435850552|ref|YP_007312138.1| - 0.035 14.6 3.3 0.035 14.6 2.3 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435850552|ref|YP_007312138.1| - 0.049 13.9 2.7 0.049 13.9 1.9 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435850552|ref|YP_007312138.1| - 0.61 10.5 20.2 3.6 8.0 6.0 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435850552|ref|YP_007312138.1| - 1.7 9.0 20.5 1.5 9.2 2.1 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435850552|ref|YP_007312138.1| - 6.2 7.2 20.2 2 8.8 1.7 3.7 3 1 0 3 3 3 0 4Fe-4S single cluster domain DDE_Tnp_1 PF01609.16 gi|435850553|ref|YP_007312139.1| - 3.7e-09 36.4 1.1 6e-09 35.7 0.7 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|435850553|ref|YP_007312139.1| - 0.00057 19.7 0.0 0.0015 18.3 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) UPF0278 PF08745.6 gi|435850554|ref|YP_007312140.1| - 3e-87 291.2 0.0 3.4e-87 291.0 0.0 1.0 1 0 0 1 1 1 1 UPF0278 family UbiA PF01040.13 gi|435850555|ref|YP_007312141.1| - 2e-39 135.3 19.4 3e-39 134.8 13.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family NadA PF02445.11 gi|435850556|ref|YP_007312142.1| - 9.2e-123 408.7 5.1 1e-122 408.5 3.5 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF2046 PF09755.4 gi|435850556|ref|YP_007312142.1| - 0.056 12.3 0.3 0.11 11.3 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein H4 (DUF2046) Peptidase_S76 PF13611.1 gi|435850556|ref|YP_007312142.1| - 0.78 9.8 3.3 1.2 9.2 0.3 2.4 3 0 0 3 3 3 0 Serine peptidase of plant viral polyprotein, P1 DUF108 PF01958.13 gi|435850557|ref|YP_007312143.1| - 3.1e-35 120.2 0.5 4.9e-35 119.6 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|435850557|ref|YP_007312143.1| - 2.8e-23 82.5 0.3 5.1e-23 81.6 0.0 1.6 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|435850557|ref|YP_007312143.1| - 4.3e-06 26.6 0.1 1.1e-05 25.3 0.1 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|435850557|ref|YP_007312143.1| - 5.2e-06 26.9 0.1 8.8e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|435850557|ref|YP_007312143.1| - 1e-05 25.8 0.3 2.7e-05 24.4 0.1 1.8 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|435850557|ref|YP_007312143.1| - 1.2e-05 25.5 0.0 1.7e-05 25.0 0.0 1.4 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|435850557|ref|YP_007312143.1| - 0.0013 17.5 0.1 0.0022 16.7 0.1 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family 2-Hacid_dh_C PF02826.14 gi|435850557|ref|YP_007312143.1| - 0.0017 17.5 0.1 0.0032 16.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|435850557|ref|YP_007312143.1| - 0.007 16.2 0.1 0.011 15.5 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|435850557|ref|YP_007312143.1| - 0.0076 15.9 0.4 0.022 14.4 0.0 1.9 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|435850557|ref|YP_007312143.1| - 0.01 15.8 0.1 0.025 14.5 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain Rossmann-like PF10727.4 gi|435850557|ref|YP_007312143.1| - 0.014 15.0 0.1 0.038 13.7 0.1 1.7 1 1 1 2 2 2 0 Rossmann-like domain Gp_dh_N PF00044.19 gi|435850557|ref|YP_007312143.1| - 0.076 12.9 0.1 0.2 11.6 0.1 1.8 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|435850557|ref|YP_007312143.1| - 0.092 11.7 0.3 0.12 11.3 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Disaggr_repeat PF06848.6 gi|435850559|ref|YP_007312145.1| - 3.2e-151 499.2 10.5 9.8e-76 253.2 1.5 2.4 2 0 0 2 2 2 2 Disaggregatase related repeat PKD PF00801.15 gi|435850559|ref|YP_007312145.1| - 5.7e-79 259.8 110.0 3.2e-12 46.0 6.5 8.8 7 0 0 7 7 7 7 PKD domain Disaggr_assoc PF08480.5 gi|435850559|ref|YP_007312145.1| - 4.5e-30 104.5 14.7 4.5e-30 104.5 10.2 2.7 3 0 0 3 3 3 1 Disaggregatase related DUF4625 PF15418.1 gi|435850559|ref|YP_007312145.1| - 1.6e-14 54.1 17.2 0.78 9.8 0.0 9.5 8 2 0 8 8 8 7 Domain of unknown function (DUF4625) Y_Y_Y PF07495.8 gi|435850559|ref|YP_007312145.1| - 3.9e-14 52.1 13.8 0.18 11.5 0.0 7.8 7 0 0 7 7 7 6 Y_Y_Y domain Beta_helix PF13229.1 gi|435850559|ref|YP_007312145.1| - 1.7e-13 50.6 40.8 1.7e-06 27.8 7.7 3.2 1 1 0 2 2 2 2 Right handed beta helix region TGFb_propeptide PF00688.13 gi|435850559|ref|YP_007312145.1| - 1.8e-07 30.7 0.0 0.35 10.1 0.0 4.2 4 0 0 4 4 4 2 TGF-beta propeptide DUF2606 PF10794.4 gi|435850559|ref|YP_007312145.1| - 4.3e-05 22.9 18.4 4.3 6.7 0.1 7.2 7 0 0 7 7 7 3 Protein of unknown function (DUF2606) SCP2_2 PF13530.1 gi|435850559|ref|YP_007312145.1| - 0.0002 20.7 26.9 1.7 7.9 0.2 7.5 7 0 0 7 7 7 3 Sterol carrier protein domain Adipogenin PF15202.1 gi|435850560|ref|YP_007312146.1| - 0.14 12.0 0.7 0.15 11.9 0.5 1.1 1 0 0 1 1 1 0 Adipogenin VWA_2 PF13519.1 gi|435850561|ref|YP_007312147.1| - 1.7e-11 44.5 0.0 3e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|435850561|ref|YP_007312147.1| - 1.9e-11 44.0 0.2 2.5e-10 40.3 0.1 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain FGE-sulfatase PF03781.11 gi|435850562|ref|YP_007312148.1| - 1.1e-51 175.7 3.6 5.8e-51 173.3 2.5 1.8 1 1 0 1 1 1 1 Sulfatase-modifying factor enzyme 1 V4R PF02830.13 gi|435850563|ref|YP_007312149.1| - 0.054 13.3 0.6 0.1 12.4 0.2 1.6 1 1 0 1 1 1 0 V4R domain URO-D PF01208.12 gi|435850564|ref|YP_007312150.1| - 1.6e-78 264.0 0.0 3.8e-78 262.8 0.0 1.5 1 1 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) GAF_2 PF13185.1 gi|435850565|ref|YP_007312151.1| - 7.3e-33 114.1 0.0 2.8e-19 70.0 0.0 2.3 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.21 gi|435850565|ref|YP_007312151.1| - 4.1e-27 94.1 0.0 8.6e-27 93.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|435850565|ref|YP_007312151.1| - 2.2e-23 82.1 0.1 9.5e-17 60.8 0.1 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|435850565|ref|YP_007312151.1| - 7.9e-20 71.1 1.2 1.2e-10 41.6 0.1 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|435850565|ref|YP_007312151.1| - 3.1e-12 46.2 0.4 7.1e-06 25.7 0.0 2.8 2 0 0 2 2 2 2 PAS fold GAF PF01590.21 gi|435850565|ref|YP_007312151.1| - 9.5e-10 38.8 0.0 8.8e-06 25.9 0.0 2.3 2 0 0 2 2 2 2 GAF domain PAS_4 PF08448.5 gi|435850565|ref|YP_007312151.1| - 1.7e-09 37.6 0.0 0.00013 21.9 0.0 2.7 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.1 gi|435850565|ref|YP_007312151.1| - 8.7e-09 35.5 0.0 0.0013 18.7 0.0 2.4 2 0 0 2 2 2 2 GAF domain HATPase_c_3 PF13589.1 gi|435850565|ref|YP_007312151.1| - 9.5e-05 22.0 0.0 0.00023 20.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|435850565|ref|YP_007312151.1| - 0.0004 20.1 0.0 0.0019 18.0 0.0 2.2 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|435850565|ref|YP_007312151.1| - 0.023 14.6 0.6 0.15 12.0 0.1 2.5 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF1338 PF07063.8 gi|435850565|ref|YP_007312151.1| - 0.045 12.8 0.0 0.1 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) DUF4445 PF14574.1 gi|435850566|ref|YP_007312152.1| - 5.2e-110 367.5 4.9 8.4e-110 366.8 3.4 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_21 PF14697.1 gi|435850566|ref|YP_007312152.1| - 5.8e-07 29.2 8.7 1.2e-06 28.2 6.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435850566|ref|YP_007312152.1| - 7.7e-07 28.4 12.1 0.0011 18.4 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435850566|ref|YP_007312152.1| - 1.6e-06 28.2 11.1 3.2e-06 27.3 7.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435850566|ref|YP_007312152.1| - 1.7e-06 28.2 11.0 3.4e-06 27.3 7.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435850566|ref|YP_007312152.1| - 3.3e-06 27.7 5.2 0.013 16.1 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|435850566|ref|YP_007312152.1| - 4.7e-05 23.1 10.8 0.00024 20.8 7.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435850566|ref|YP_007312152.1| - 0.00015 21.4 11.2 0.0081 16.0 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435850566|ref|YP_007312152.1| - 0.00056 20.2 11.6 0.016 15.6 1.7 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435850566|ref|YP_007312152.1| - 0.00062 19.5 14.3 0.067 13.0 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435850566|ref|YP_007312152.1| - 0.0012 19.0 11.2 0.12 12.7 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435850566|ref|YP_007312152.1| - 0.0044 17.0 10.5 0.026 14.5 1.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435850566|ref|YP_007312152.1| - 0.13 12.6 11.2 0.067 13.5 1.8 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435850566|ref|YP_007312152.1| - 0.36 11.5 16.6 1.4 9.6 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF1724 PF08350.5 gi|435850568|ref|YP_007312154.1| - 2.8e-17 62.0 0.5 6.1e-17 60.9 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|435850568|ref|YP_007312154.1| - 0.00037 20.2 0.1 0.00094 18.9 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix Herpes_TAF50 PF03326.8 gi|435850568|ref|YP_007312154.1| - 0.0024 16.9 0.0 0.0033 16.4 0.0 1.1 1 0 0 1 1 1 1 Herpesvirus transcription activation factor (transactivator) HTH_27 PF13463.1 gi|435850568|ref|YP_007312154.1| - 0.0026 18.0 0.0 0.0048 17.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|435850568|ref|YP_007312154.1| - 0.016 14.9 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|435850568|ref|YP_007312154.1| - 0.017 14.8 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|435850568|ref|YP_007312154.1| - 0.041 13.4 0.7 0.11 12.0 0.1 1.9 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_5 PF01022.15 gi|435850568|ref|YP_007312154.1| - 0.05 13.2 0.0 0.087 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|435850568|ref|YP_007312154.1| - 0.089 12.8 0.1 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain PMSR PF01625.16 gi|435850569|ref|YP_007312155.1| - 7.7e-53 178.5 0.5 5.1e-32 110.9 0.0 2.0 1 1 1 2 2 2 2 Peptide methionine sulfoxide reductase Oxidored_FMN PF00724.15 gi|435850570|ref|YP_007312156.1| - 3.4e-49 167.6 0.0 8.6e-49 166.3 0.0 1.7 1 1 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox_2 PF07992.9 gi|435850570|ref|YP_007312156.1| - 3.7e-17 62.8 0.2 3.7e-07 30.2 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|435850570|ref|YP_007312156.1| - 1.2e-14 54.4 2.7 2.8e-06 27.6 0.2 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|435850570|ref|YP_007312156.1| - 8.9e-13 47.8 3.2 1.5e-05 24.1 0.2 3.3 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|435850570|ref|YP_007312156.1| - 2e-11 43.7 1.4 2e-07 30.9 0.0 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|435850570|ref|YP_007312156.1| - 2.6e-11 43.0 0.0 7e-07 28.4 0.0 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|435850570|ref|YP_007312156.1| - 3.9e-09 35.8 2.6 6.3e-06 25.2 0.4 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|435850570|ref|YP_007312156.1| - 5e-08 32.4 0.4 6.8e-07 28.7 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|435850570|ref|YP_007312156.1| - 6.5e-08 31.4 2.8 5.3e-07 28.4 0.3 2.3 2 0 0 2 2 2 1 HI0933-like protein 3HCDH_N PF02737.13 gi|435850570|ref|YP_007312156.1| - 1.4e-06 28.0 0.7 0.017 14.7 0.0 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|435850570|ref|YP_007312156.1| - 1.5e-06 28.4 0.1 0.13 12.4 0.0 3.1 2 1 0 2 2 2 2 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|435850570|ref|YP_007312156.1| - 1.9e-06 28.1 0.3 0.00027 21.0 0.0 2.7 2 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|435850570|ref|YP_007312156.1| - 2.3e-05 24.2 0.6 1.3 8.8 0.1 4.3 4 0 0 4 4 4 1 ThiF family Thi4 PF01946.12 gi|435850570|ref|YP_007312156.1| - 3.3e-05 23.0 0.2 0.0071 15.4 0.0 2.4 2 0 0 2 2 2 1 Thi4 family NAD_binding_10 PF13460.1 gi|435850570|ref|YP_007312156.1| - 0.0001 22.4 1.2 0.093 12.7 0.0 3.9 3 1 1 4 4 4 1 NADH(P)-binding FAD_binding_3 PF01494.14 gi|435850570|ref|YP_007312156.1| - 0.00012 21.3 1.2 0.31 10.0 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain ApbA PF02558.11 gi|435850570|ref|YP_007312156.1| - 0.00012 21.5 0.9 0.0095 15.3 0.1 2.8 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA K_oxygenase PF13434.1 gi|435850570|ref|YP_007312156.1| - 0.00038 19.5 0.0 1.5 7.6 0.0 3.0 2 1 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.16 gi|435850570|ref|YP_007312156.1| - 0.0006 19.4 0.3 0.017 14.7 0.0 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FMO-like PF00743.14 gi|435850570|ref|YP_007312156.1| - 0.00089 17.5 0.2 0.012 13.9 0.0 2.0 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like NAD_Gly3P_dh_N PF01210.18 gi|435850570|ref|YP_007312156.1| - 0.0013 18.4 0.2 0.059 13.1 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_9 PF13454.1 gi|435850570|ref|YP_007312156.1| - 0.0025 17.5 1.4 0.19 11.5 0.0 2.7 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|435850570|ref|YP_007312156.1| - 0.0029 16.6 0.5 1.1 8.1 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Shikimate_DH PF01488.15 gi|435850570|ref|YP_007312156.1| - 0.0051 16.9 5.1 0.55 10.3 0.4 3.6 3 1 0 4 4 4 1 Shikimate / quinate 5-dehydrogenase CPSase_L_chain PF00289.17 gi|435850570|ref|YP_007312156.1| - 0.0058 16.7 0.1 1.7 8.7 0.0 2.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Dus PF01207.12 gi|435850570|ref|YP_007312156.1| - 0.038 12.8 0.0 0.078 11.7 0.0 1.5 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) UDPG_MGDP_dh_N PF03721.9 gi|435850570|ref|YP_007312156.1| - 0.043 13.2 2.1 2.4 7.5 0.0 2.6 3 0 0 3 3 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|435850570|ref|YP_007312156.1| - 0.085 11.8 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|435850570|ref|YP_007312156.1| - 0.2 11.6 1.7 15 5.6 0.2 3.2 3 0 0 3 3 3 0 TrkA-N domain B12-binding PF02310.14 gi|435850571|ref|YP_007312157.1| - 2.1e-23 82.4 0.5 2.9e-23 81.9 0.4 1.2 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|435850571|ref|YP_007312157.1| - 8.7e-17 60.9 0.0 1.9e-16 59.8 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain APC8 PF04049.8 gi|435850571|ref|YP_007312157.1| - 0.11 12.2 0.3 0.22 11.2 0.1 1.6 2 0 0 2 2 2 0 Anaphase promoting complex subunit 8 / Cdc23 URO-D PF01208.12 gi|435850572|ref|YP_007312158.1| - 2.2e-82 276.7 1.9 2.5e-82 276.5 1.3 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_2 PF01717.13 gi|435850572|ref|YP_007312158.1| - 0.0021 17.1 0.7 0.0031 16.5 0.4 1.3 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain ATXN-1_C PF12547.3 gi|435850572|ref|YP_007312158.1| - 0.064 13.2 0.0 0.21 11.6 0.0 1.9 1 0 0 1 1 1 0 Capicua transcriptional repressor modulator ESSS PF10183.4 gi|435850573|ref|YP_007312159.1| - 0.79 10.1 7.1 1.4 9.3 0.0 3.7 4 0 0 4 4 4 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) Aldedh PF00171.17 gi|435850574|ref|YP_007312160.1| - 1.4e-90 303.8 0.0 1.6e-90 303.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|435850574|ref|YP_007312160.1| - 4.2e-07 29.0 0.0 5.3e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) adh_short PF00106.20 gi|435850575|ref|YP_007312161.1| - 3.6e-21 75.8 0.0 6.1e-21 75.0 0.0 1.4 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|435850575|ref|YP_007312161.1| - 4.5e-07 29.7 0.0 6.9e-07 29.0 0.0 1.4 1 1 0 1 1 1 1 KR domain ArgK PF03308.11 gi|435850575|ref|YP_007312161.1| - 0.045 12.5 0.0 0.45 9.2 0.0 2.0 2 0 0 2 2 2 0 ArgK protein RmlD_sub_bind PF04321.12 gi|435850575|ref|YP_007312161.1| - 0.07 12.0 0.0 0.12 11.2 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Epimerase PF01370.16 gi|435850575|ref|YP_007312161.1| - 0.092 12.1 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family C_GCAxxG_C_C PF09719.5 gi|435850576|ref|YP_007312162.1| - 0.0042 16.8 0.7 0.0042 16.8 0.5 1.8 2 0 0 2 2 2 1 Putative redox-active protein (C_GCAxxG_C_C) zf-P11 PF03854.9 gi|435850576|ref|YP_007312162.1| - 1.1 8.8 12.6 0.032 13.6 4.0 2.0 2 0 0 2 2 2 0 P-11 zinc finger Methyltransf_11 PF08241.7 gi|435850577|ref|YP_007312163.1| - 1e-16 61.1 0.0 2e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435850577|ref|YP_007312163.1| - 1.3e-12 48.3 0.0 2e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435850577|ref|YP_007312163.1| - 1.3e-12 47.5 0.0 1.7e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435850577|ref|YP_007312163.1| - 1.3e-11 44.7 0.0 5.6e-11 42.7 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.9 gi|435850577|ref|YP_007312163.1| - 5.9e-11 41.8 0.0 8.9e-11 41.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_26 PF13659.1 gi|435850577|ref|YP_007312163.1| - 2.9e-07 30.5 0.0 4.6e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|435850577|ref|YP_007312163.1| - 1e-06 28.5 0.0 1.4e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|435850577|ref|YP_007312163.1| - 0.00041 19.5 0.0 0.00055 19.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|435850577|ref|YP_007312163.1| - 0.00044 19.9 0.0 0.0016 18.1 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_12 PF08242.7 gi|435850577|ref|YP_007312163.1| - 0.0009 19.6 0.0 0.0018 18.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435850577|ref|YP_007312163.1| - 0.034 13.5 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DUF938 PF06080.7 gi|435850577|ref|YP_007312163.1| - 0.072 12.6 0.0 0.17 11.4 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_32 PF13679.1 gi|435850577|ref|YP_007312163.1| - 0.098 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.11 gi|435850577|ref|YP_007312163.1| - 0.16 10.2 0.0 0.2 9.9 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase AMP-binding PF00501.23 gi|435850578|ref|YP_007312164.1| - 8.1e-16 57.4 0.0 1.1e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Radical_SAM PF04055.16 gi|435850579|ref|YP_007312165.1| - 4.7e-17 62.6 0.2 4.7e-17 62.6 0.1 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|435850579|ref|YP_007312165.1| - 2.1e-06 27.7 0.1 2.1e-06 27.7 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|435850579|ref|YP_007312165.1| - 9e-06 25.8 0.2 9e-06 25.8 0.1 2.7 2 1 1 3 3 3 1 4Fe-4S single cluster domain DUF4258 PF14076.1 gi|435850580|ref|YP_007312166.1| - 0.0085 16.0 0.2 0.09 12.7 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4258) PHD_2 PF13831.1 gi|435850580|ref|YP_007312166.1| - 0.061 12.6 1.5 0.55 9.5 0.3 2.2 2 0 0 2 2 2 0 PHD-finger DUF2296 PF10058.4 gi|435850580|ref|YP_007312166.1| - 0.068 12.9 0.2 1.7 8.4 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) URO-D PF01208.12 gi|435850581|ref|YP_007312167.1| - 4.1e-38 131.1 0.0 4.9e-38 130.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) TehB PF03848.9 gi|435850582|ref|YP_007312168.1| - 0.04 13.0 0.2 0.045 12.9 0.1 1.0 1 0 0 1 1 1 0 Tellurite resistance protein TehB DUF1724 PF08350.5 gi|435850583|ref|YP_007312169.1| - 1.2e-23 82.4 0.2 2.2e-23 81.5 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|435850583|ref|YP_007312169.1| - 0.0001 21.8 0.1 0.00021 20.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|435850583|ref|YP_007312169.1| - 0.0003 20.5 2.7 0.00092 18.9 0.2 2.8 2 1 1 3 3 3 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|435850583|ref|YP_007312169.1| - 0.0014 18.4 0.0 0.0024 17.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|435850583|ref|YP_007312169.1| - 0.0062 16.5 0.3 0.014 15.4 0.1 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|435850583|ref|YP_007312169.1| - 0.008 16.4 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MotA_activ PF09114.5 gi|435850583|ref|YP_007312169.1| - 0.0097 15.6 0.2 0.019 14.6 0.1 1.5 1 0 0 1 1 1 1 Transcription factor MotA, activation domain TrmB PF01978.14 gi|435850583|ref|YP_007312169.1| - 0.029 14.0 0.1 0.058 13.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|435850583|ref|YP_007312169.1| - 0.072 12.8 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|435850583|ref|YP_007312169.1| - 0.076 12.6 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 HTH domain QRPTase_C PF01729.14 gi|435850584|ref|YP_007312170.1| - 7.2e-60 201.3 3.2 8.9e-60 201.0 2.2 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|435850584|ref|YP_007312170.1| - 1.4e-19 69.7 0.0 3e-19 68.6 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain IMPDH PF00478.20 gi|435850584|ref|YP_007312170.1| - 5.7e-05 22.1 0.2 6.3e-05 22.0 0.1 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.14 gi|435850584|ref|YP_007312170.1| - 0.002 17.2 0.3 0.0048 16.0 0.1 1.6 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.12 gi|435850584|ref|YP_007312170.1| - 0.037 13.1 0.2 0.076 12.1 0.1 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI DUF296 PF03479.10 gi|435850585|ref|YP_007312171.1| - 1.2e-18 66.8 0.0 1.4e-18 66.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) Enolase_C PF00113.17 gi|435850586|ref|YP_007312172.1| - 5e-113 376.9 0.4 6.6e-113 376.5 0.3 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|435850586|ref|YP_007312172.1| - 1.5e-59 199.6 0.3 3.3e-59 198.5 0.1 1.7 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|435850586|ref|YP_007312172.1| - 0.017 15.0 0.0 0.045 13.7 0.0 1.7 1 0 0 1 1 1 0 Enolase C-terminal domain-like LysE PF01810.13 gi|435850587|ref|YP_007312173.1| - 2.3e-27 95.5 16.9 2.8e-27 95.2 11.7 1.1 1 0 0 1 1 1 1 LysE type translocator DUF1418 PF07214.7 gi|435850587|ref|YP_007312173.1| - 0.089 12.4 3.1 0.16 11.6 1.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1418) TerC PF03741.11 gi|435850587|ref|YP_007312173.1| - 0.61 9.5 12.2 3.6 7.0 8.5 2.2 1 1 0 1 1 1 0 Integral membrane protein TerC family Pyrophosphatase PF00719.14 gi|435850588|ref|YP_007312174.1| - 4.4e-12 45.7 0.2 6.5e-12 45.1 0.1 1.5 1 1 0 1 1 1 1 Inorganic pyrophosphatase LGT PF01790.13 gi|435850588|ref|YP_007312174.1| - 0.083 11.8 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Prolipoprotein diacylglyceryl transferase PAS_9 PF13426.1 gi|435850589|ref|YP_007312175.1| - 1.1e-21 77.1 0.1 2.3e-11 44.0 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|435850589|ref|YP_007312175.1| - 5e-19 68.1 0.0 2.8e-08 33.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|435850589|ref|YP_007312175.1| - 5.2e-18 64.7 0.0 1.1e-17 63.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|435850589|ref|YP_007312175.1| - 2.9e-09 36.9 0.0 1.2e-07 31.7 0.0 2.7 2 1 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|435850589|ref|YP_007312175.1| - 5.3e-08 32.7 0.7 2.8e-07 30.4 0.1 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|435850589|ref|YP_007312175.1| - 5.6e-07 29.1 0.1 0.028 14.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|435850589|ref|YP_007312175.1| - 4.7e-05 23.3 0.1 0.1 12.7 0.0 2.8 3 0 0 3 3 3 2 PAS fold HATPase_c_2 PF13581.1 gi|435850589|ref|YP_007312175.1| - 0.00056 19.6 0.0 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|435850589|ref|YP_007312175.1| - 0.016 15.2 0.5 1.7 8.6 0.1 3.6 3 1 0 3 3 3 0 PAS fold NYD-SP28_assoc PF14775.1 gi|435850589|ref|YP_007312175.1| - 0.13 12.0 0.8 0.29 10.8 0.0 2.1 2 0 0 2 2 2 0 Sperm tail C-terminal domain MacB_PCD PF12704.2 gi|435850590|ref|YP_007312176.1| - 4.3e-38 131.1 2.1 4.3e-38 131.1 1.4 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|435850590|ref|YP_007312176.1| - 3.4e-22 78.4 18.3 1.9e-21 76.0 9.1 2.3 2 0 0 2 2 2 2 FtsX-like permease family DUF202 PF02656.10 gi|435850590|ref|YP_007312176.1| - 5.6 7.2 5.9 38 4.6 2.4 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF202) ABC_tran PF00005.22 gi|435850591|ref|YP_007312177.1| - 3.5e-35 121.2 0.0 4.8e-35 120.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435850591|ref|YP_007312177.1| - 7.9e-13 49.0 0.2 2.6e-08 34.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|435850591|ref|YP_007312177.1| - 2.7e-07 30.0 0.3 3.1e-05 23.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|435850591|ref|YP_007312177.1| - 0.00025 20.4 0.1 0.00052 19.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|435850591|ref|YP_007312177.1| - 0.0018 17.4 0.5 0.26 10.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|435850591|ref|YP_007312177.1| - 0.0024 17.9 0.4 1.2 9.2 0.1 3.0 2 1 0 4 4 4 1 AAA domain DUF258 PF03193.11 gi|435850591|ref|YP_007312177.1| - 0.0038 16.4 0.1 0.007 15.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|435850591|ref|YP_007312177.1| - 0.02 14.2 0.0 0.081 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|435850591|ref|YP_007312177.1| - 0.03 14.2 0.0 0.25 11.2 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|435850591|ref|YP_007312177.1| - 0.043 13.7 0.2 0.09 12.7 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|435850591|ref|YP_007312177.1| - 0.045 13.1 0.2 0.27 10.6 0.1 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|435850591|ref|YP_007312177.1| - 0.047 13.5 0.0 0.34 10.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|435850591|ref|YP_007312177.1| - 0.1 12.9 0.5 1.2 9.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|435850591|ref|YP_007312177.1| - 0.14 11.7 0.1 0.57 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|435850591|ref|YP_007312177.1| - 0.14 12.4 0.7 0.46 10.7 0.5 2.0 1 1 0 1 1 1 0 AAA domain DUF11 PF01345.13 gi|435850592|ref|YP_007312178.1| - 0.019 15.0 1.1 0.072 13.1 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|435850592|ref|YP_007312178.1| - 0.039 14.0 0.1 2.3 8.3 0.0 3.3 4 0 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase OppC_N PF12911.2 gi|435850592|ref|YP_007312178.1| - 0.058 12.7 0.3 0.058 12.7 0.2 2.0 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF3938 PF13074.1 gi|435850592|ref|YP_007312178.1| - 0.069 13.0 0.1 1.1 9.1 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3938) DUF912 PF06024.7 gi|435850592|ref|YP_007312178.1| - 0.17 11.9 0.1 0.17 11.9 0.1 2.0 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Chordopox_A13L PF05961.6 gi|435850592|ref|YP_007312178.1| - 1.1 9.3 4.8 1.1 9.2 0.4 2.7 3 0 0 3 3 3 0 Chordopoxvirus A13L protein Yip1 PF04893.12 gi|435850593|ref|YP_007312179.1| - 3.3e-30 104.8 17.6 4e-30 104.5 12.2 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|435850593|ref|YP_007312179.1| - 7.4e-08 32.2 23.5 8.1e-07 28.8 16.3 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) MtrF PF09472.5 gi|435850593|ref|YP_007312179.1| - 0.017 14.3 2.9 0.017 14.3 2.0 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) Yip1 PF04893.12 gi|435850594|ref|YP_007312180.1| - 4.7e-23 81.5 14.9 5.8e-23 81.2 10.3 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|435850594|ref|YP_007312180.1| - 0.043 13.4 17.6 0.12 12.0 12.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) DUF334 PF03904.8 gi|435850594|ref|YP_007312180.1| - 0.74 9.0 4.0 1.4 8.1 2.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF334) DUF4212 PF13937.1 gi|435850594|ref|YP_007312180.1| - 6.4 6.8 11.6 0.061 13.3 2.0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4212) ABC_tran PF00005.22 gi|435850595|ref|YP_007312181.1| - 3.2e-34 118.1 0.0 4.1e-34 117.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435850595|ref|YP_007312181.1| - 3.8e-14 53.3 0.0 8.7e-09 35.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|435850595|ref|YP_007312181.1| - 5.6e-07 29.0 0.2 0.014 14.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|435850595|ref|YP_007312181.1| - 6.6e-05 23.0 0.3 0.0011 19.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|435850595|ref|YP_007312181.1| - 0.00018 21.0 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_29 PF13555.1 gi|435850595|ref|YP_007312181.1| - 0.00031 20.2 0.1 0.00083 18.8 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain Adeno_IVa2 PF02456.10 gi|435850595|ref|YP_007312181.1| - 0.00063 18.5 0.0 0.0025 16.5 0.0 1.8 2 0 0 2 2 2 1 Adenovirus IVa2 protein DUF258 PF03193.11 gi|435850595|ref|YP_007312181.1| - 0.00099 18.3 0.0 0.0016 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|435850595|ref|YP_007312181.1| - 0.0018 17.7 0.0 0.0058 16.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|435850595|ref|YP_007312181.1| - 0.0021 17.9 0.0 0.0037 17.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|435850595|ref|YP_007312181.1| - 0.0091 16.3 0.0 0.9 9.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|435850595|ref|YP_007312181.1| - 0.013 16.2 0.0 0.03 15.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|435850595|ref|YP_007312181.1| - 0.018 15.0 0.1 0.024 14.6 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.1 gi|435850595|ref|YP_007312181.1| - 0.037 14.3 0.1 0.075 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|435850595|ref|YP_007312181.1| - 0.043 13.7 0.2 0.061 13.2 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|435850595|ref|YP_007312181.1| - 0.062 12.9 0.0 0.41 10.2 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase AAA_15 PF13175.1 gi|435850595|ref|YP_007312181.1| - 0.072 12.1 0.0 3 6.7 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|435850595|ref|YP_007312181.1| - 0.13 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|435850595|ref|YP_007312181.1| - 0.14 12.0 0.1 1.1 9.2 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|435850595|ref|YP_007312181.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain CARDB PF07705.6 gi|435850596|ref|YP_007312182.1| - 0.00022 21.2 2.9 0.64 10.1 0.0 3.8 2 2 1 3 3 3 1 CARDB Cadherin-like PF12733.2 gi|435850596|ref|YP_007312182.1| - 0.0008 19.6 5.6 0.075 13.3 0.3 4.1 2 2 1 3 3 3 1 Cadherin-like beta sandwich domain Wzt_C PF14524.1 gi|435850596|ref|YP_007312182.1| - 0.0079 15.8 0.6 0.34 10.5 0.4 2.5 1 1 0 1 1 1 1 Wzt C-terminal domain DUF11 PF01345.13 gi|435850596|ref|YP_007312182.1| - 0.01 15.8 0.0 0.17 11.9 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF11 DUF4366 PF14283.1 gi|435850596|ref|YP_007312182.1| - 0.012 15.0 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) DUF4448 PF14610.1 gi|435850596|ref|YP_007312182.1| - 0.068 12.6 0.8 11 5.4 0.0 3.0 2 2 1 3 3 3 0 Protein of unknown function (DUF4448) PPC PF04151.10 gi|435850596|ref|YP_007312182.1| - 1.3 10.0 4.8 4 8.4 3.4 2.0 1 0 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain MacB_PCD PF12704.2 gi|435850597|ref|YP_007312183.1| - 2.5e-36 125.4 6.2 2.5e-36 125.4 4.3 2.8 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|435850597|ref|YP_007312183.1| - 1.7e-24 85.8 14.7 6.2e-24 84.0 5.7 2.2 2 0 0 2 2 2 2 FtsX-like permease family Myc_target_1 PF15179.1 gi|435850597|ref|YP_007312183.1| - 0.16 11.5 0.2 0.16 11.5 0.2 2.0 2 0 0 2 2 2 0 Myc target protein 1 DUF1625 PF07787.7 gi|435850597|ref|YP_007312183.1| - 0.17 11.1 2.0 0.2 10.8 0.4 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1625) ATPase_gene1 PF09527.5 gi|435850597|ref|YP_007312183.1| - 7.8 6.3 10.7 4.2 7.2 0.1 3.5 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) MacB_PCD PF12704.2 gi|435850598|ref|YP_007312184.1| - 1.2e-35 123.2 6.1 1.2e-35 123.2 4.2 2.3 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|435850598|ref|YP_007312184.1| - 1e-22 80.1 9.3 1e-22 80.1 6.5 2.2 2 0 0 2 2 2 1 FtsX-like permease family YbjQ_1 PF01906.12 gi|435850599|ref|YP_007312185.1| - 3.4e-36 123.8 1.2 3.8e-36 123.7 0.8 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|435850599|ref|YP_007312185.1| - 0.0019 18.2 0.4 0.089 12.9 0.0 2.1 1 1 1 2 2 2 2 Selenium binding protein 3-alpha PF03475.9 gi|435850599|ref|YP_007312185.1| - 0.15 11.8 0.2 0.23 11.1 0.1 1.3 1 0 0 1 1 1 0 3-alpha domain Orn_Arg_deC_N PF02784.11 gi|435850600|ref|YP_007312186.1| - 5.6e-48 163.3 0.0 7.5e-48 162.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|435850600|ref|YP_007312186.1| - 2.1e-19 69.3 0.0 3.2e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|435850600|ref|YP_007312186.1| - 0.0021 17.6 0.0 0.0028 17.2 0.0 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain EamA PF00892.15 gi|435850601|ref|YP_007312187.1| - 1.2e-05 25.3 5.0 2e-05 24.6 2.4 2.0 1 1 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|435850601|ref|YP_007312187.1| - 0.25 11.5 6.7 0.058 13.5 1.3 2.2 1 1 1 2 2 2 0 Multidrug resistance efflux transporter Oxidored_q4 PF00507.14 gi|435850601|ref|YP_007312187.1| - 0.45 10.3 5.4 0.098 12.4 1.3 1.7 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 META PF03724.11 gi|435850602|ref|YP_007312188.1| - 9e-14 51.1 0.0 1.3e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 META domain Lipocalin_4 PF13648.1 gi|435850602|ref|YP_007312188.1| - 0.046 14.3 4.9 0.11 13.1 3.1 1.7 1 1 1 2 2 2 0 Lipocalin-like domain Disaggr_repeat PF06848.6 gi|435850603|ref|YP_007312189.1| - 9.7e-77 256.5 2.4 9.7e-77 256.5 1.7 2.3 3 0 0 3 3 3 1 Disaggregatase related repeat Disaggr_assoc PF08480.5 gi|435850603|ref|YP_007312189.1| - 7e-29 100.6 19.7 7e-29 100.6 13.7 2.9 3 0 0 3 3 3 1 Disaggregatase related PKD PF00801.15 gi|435850603|ref|YP_007312189.1| - 4.5e-13 48.7 10.7 9.1e-13 47.7 5.5 3.2 2 0 0 2 2 2 1 PKD domain Beta_helix PF13229.1 gi|435850603|ref|YP_007312189.1| - 1.4e-10 41.1 57.1 5.2e-06 26.2 19.7 3.5 1 1 1 2 2 2 2 Right handed beta helix region TGFb_propeptide PF00688.13 gi|435850603|ref|YP_007312189.1| - 0.0084 15.4 0.0 1.6 7.9 0.0 2.2 2 0 0 2 2 2 2 TGF-beta propeptide DUF4625 PF15418.1 gi|435850603|ref|YP_007312189.1| - 0.055 13.5 1.8 1 9.4 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4625) PAS_8 PF13188.1 gi|435850604|ref|YP_007312190.1| - 0.00043 20.0 0.0 0.0011 18.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.21 gi|435850605|ref|YP_007312191.1| - 1.9e-18 66.2 0.1 3.1e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|435850605|ref|YP_007312191.1| - 1.1e-06 28.3 0.0 2.1e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|435850605|ref|YP_007312191.1| - 4.3e-05 23.1 0.7 8.6e-05 22.2 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|435850605|ref|YP_007312191.1| - 6.4e-05 22.8 0.1 0.00018 21.4 0.0 1.7 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain CtIP_N PF10482.4 gi|435850605|ref|YP_007312191.1| - 0.015 15.0 1.9 0.027 14.2 1.3 1.4 1 0 0 1 1 1 0 Tumour-suppressor protein CtIP N-terminal domain SPOB_a PF14689.1 gi|435850605|ref|YP_007312191.1| - 0.017 14.6 2.2 0.031 13.8 1.1 1.9 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Syntaxin-6_N PF09177.6 gi|435850605|ref|YP_007312191.1| - 0.047 14.0 1.5 0.093 13.1 1.1 1.5 1 0 0 1 1 1 0 Syntaxin 6, N-terminal Na_H_Exchanger PF00999.16 gi|435850606|ref|YP_007312192.1| - 5e-71 239.2 54.6 5e-71 239.2 37.8 1.3 2 0 0 2 2 2 1 Sodium/hydrogen exchanger family PHP_C PF13263.1 gi|435850608|ref|YP_007312194.1| - 0.0013 18.1 0.0 0.0028 17.1 0.0 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|435850608|ref|YP_007312194.1| - 0.0074 16.0 0.2 0.011 15.5 0.1 1.4 1 0 0 1 1 1 1 PHP domain PAC2 PF09754.4 gi|435850609|ref|YP_007312195.1| - 8.9e-52 176.1 0.0 1.1e-51 175.8 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Radical_SAM PF04055.16 gi|435850609|ref|YP_007312195.1| - 0.0078 16.3 0.0 0.038 14.1 0.0 2.1 2 1 0 2 2 2 1 Radical SAM superfamily Nop10p PF04135.7 gi|435850610|ref|YP_007312196.1| - 2.1e-23 81.8 0.5 2.4e-23 81.5 0.4 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.10 gi|435850610|ref|YP_007312196.1| - 0.0019 17.5 0.6 0.0026 17.1 0.4 1.3 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.8 gi|435850610|ref|YP_007312196.1| - 0.11 10.0 0.3 0.1 10.2 0.2 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF1272 PF06906.6 gi|435850610|ref|YP_007312196.1| - 0.2 11.5 2.4 0.3 10.9 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-tcix PF14952.1 gi|435850610|ref|YP_007312196.1| - 0.66 9.3 7.0 0.29 10.5 0.4 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Fer4 PF00037.22 gi|435850610|ref|YP_007312196.1| - 1.2 8.8 4.5 14 5.4 0.4 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435850610|ref|YP_007312196.1| - 1.3 9.1 4.0 11 6.1 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435850610|ref|YP_007312196.1| - 1.6 9.2 4.7 17 6.0 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain zf-FCS PF06467.9 gi|435850610|ref|YP_007312196.1| - 2.1 8.0 7.1 37 4.0 5.0 2.2 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif zf-ribbon_3 PF13248.1 gi|435850610|ref|YP_007312196.1| - 2.8 7.2 6.1 26 4.2 4.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|435850610|ref|YP_007312196.1| - 4.8 6.7 7.8 2.2e+02 1.4 5.4 2.5 1 1 0 1 1 1 0 zinc-ribbon domain EIF_2_alpha PF07541.7 gi|435850611|ref|YP_007312197.1| - 7.9e-27 93.2 0.2 1.3e-26 92.5 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|435850611|ref|YP_007312197.1| - 1.4e-11 44.3 0.2 3.6e-11 42.9 0.2 1.7 1 0 0 1 1 1 1 S1 RNA binding domain Ribosomal_S27e PF01667.12 gi|435850612|ref|YP_007312198.1| - 5.4e-24 83.5 1.1 5.8e-24 83.3 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-BED PF02892.10 gi|435850612|ref|YP_007312198.1| - 0.0038 16.9 4.9 0.097 12.4 3.4 2.0 1 1 0 1 1 1 1 BED zinc finger Zn_Tnp_IS91 PF14319.1 gi|435850612|ref|YP_007312198.1| - 0.006 16.0 0.3 0.006 16.0 0.2 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain Sgf11 PF08209.6 gi|435850612|ref|YP_007312198.1| - 0.0073 15.6 2.5 0.037 13.3 0.0 2.2 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) HypA PF01155.14 gi|435850612|ref|YP_007312198.1| - 0.032 13.9 0.4 0.037 13.7 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|435850612|ref|YP_007312198.1| - 0.081 12.6 0.4 0.1 12.3 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|435850612|ref|YP_007312198.1| - 0.082 12.8 1.0 0.12 12.3 0.7 1.2 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_6 PF14599.1 gi|435850612|ref|YP_007312198.1| - 0.12 12.2 2.3 0.24 11.2 1.4 1.8 2 1 0 2 2 2 0 Zinc-ribbon BIR PF00653.16 gi|435850612|ref|YP_007312198.1| - 0.15 12.5 0.4 0.6 10.5 0.0 1.8 1 1 1 2 2 2 0 Inhibitor of Apoptosis domain zf-C2H2_3 PF13878.1 gi|435850612|ref|YP_007312198.1| - 0.17 11.4 0.8 10 5.7 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO TF_Zn_Ribbon PF08271.7 gi|435850612|ref|YP_007312198.1| - 0.2 10.9 1.5 0.28 10.5 1.1 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding DUF2180 PF09947.4 gi|435850612|ref|YP_007312198.1| - 0.41 10.4 2.0 0.77 9.5 1.4 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) zf-RanBP PF00641.13 gi|435850612|ref|YP_007312198.1| - 0.64 9.1 2.8 6.8 5.8 0.1 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others TFIIS_C PF01096.13 gi|435850612|ref|YP_007312198.1| - 1.4 8.6 4.0 16 5.2 0.3 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L44 PF00935.14 gi|435850613|ref|YP_007312199.1| - 8.4e-28 96.2 6.0 8.4e-28 96.2 4.1 1.4 1 1 1 2 2 2 1 Ribosomal protein L44 Zn-ribbon_8 PF09723.5 gi|435850613|ref|YP_007312199.1| - 0.18 11.7 2.0 5 7.1 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|435850613|ref|YP_007312199.1| - 0.21 11.9 6.4 5.1 7.5 0.1 2.6 2 0 0 2 2 2 0 Zinc-finger double domain zf-C4_ClpX PF06689.8 gi|435850613|ref|YP_007312199.1| - 0.3 10.6 4.4 7.6 6.1 0.5 2.2 2 0 0 2 2 2 0 ClpX C4-type zinc finger zf-met PF12874.2 gi|435850613|ref|YP_007312199.1| - 0.39 10.9 5.7 0.76 10.0 0.9 2.3 2 0 0 2 2 2 0 Zinc-finger of C2H2 type zf-C3HC4_3 PF13920.1 gi|435850613|ref|YP_007312199.1| - 0.62 9.7 4.8 3 7.5 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) RNHCP PF12647.2 gi|435850613|ref|YP_007312199.1| - 0.64 9.8 4.3 4.4 7.1 0.4 2.1 1 1 0 2 2 2 0 RNHCP domain Zn_Tnp_IS1 PF03811.8 gi|435850613|ref|YP_007312199.1| - 1.1 8.7 7.5 0.66 9.5 0.1 2.7 2 1 0 2 2 2 0 InsA N-terminal domain DUF2225 PF09986.4 gi|435850613|ref|YP_007312199.1| - 2.5 7.5 5.6 12 5.2 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) Ribosomal_L33 PF00471.15 gi|435850613|ref|YP_007312199.1| - 4.6 7.5 9.7 1.1 9.5 2.0 2.3 2 0 0 2 2 2 0 Ribosomal protein L33 Mon1 PF03164.9 gi|435850614|ref|YP_007312200.1| - 0.062 11.8 0.1 0.087 11.4 0.0 1.2 1 0 0 1 1 1 0 Trafficking protein Mon1 Prismane PF03063.15 gi|435850615|ref|YP_007312201.1| - 6e-162 539.6 0.0 6.8e-162 539.4 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family DNA_primase_S PF01896.14 gi|435850616|ref|YP_007312202.1| - 1.5e-22 79.9 0.0 3.1e-22 78.9 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit HHH_5 PF14520.1 gi|435850616|ref|YP_007312202.1| - 3.8e-07 30.1 0.8 0.019 15.0 0.0 2.8 3 0 0 3 3 3 2 Helix-hairpin-helix domain HHH PF00633.18 gi|435850616|ref|YP_007312202.1| - 0.028 14.1 0.0 0.15 11.7 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|435850616|ref|YP_007312202.1| - 0.091 12.6 0.1 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif FbpA PF05833.6 gi|435850617|ref|YP_007312203.1| - 9.2e-98 327.7 1.4 1.2e-97 327.3 0.9 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|435850617|ref|YP_007312203.1| - 5.3e-29 99.9 0.0 1.5e-28 98.5 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF814) Laminin_I PF06008.9 gi|435850617|ref|YP_007312203.1| - 1.4 8.1 7.5 1 8.6 0.4 2.2 1 1 0 2 2 2 0 Laminin Domain I eRF1_1 PF03463.10 gi|435850618|ref|YP_007312204.1| - 1.8e-29 101.9 0.5 3.2e-29 101.1 0.4 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|435850618|ref|YP_007312204.1| - 2e-21 76.3 0.1 5e-21 75.0 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|435850618|ref|YP_007312204.1| - 7.6e-19 68.3 0.2 1.2e-18 67.6 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 2 Grp1_Fun34_YaaH PF01184.14 gi|435850619|ref|YP_007312205.1| - 5.2e-29 101.0 27.7 6.2e-29 100.8 19.2 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family DisA_N PF02457.11 gi|435850620|ref|YP_007312206.1| - 2.1e-28 97.8 0.1 4e-28 97.0 0.1 1.5 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding LigT_PEase PF02834.11 gi|435850621|ref|YP_007312207.1| - 2.7e-29 100.9 0.0 1.4e-16 60.1 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|435850621|ref|YP_007312207.1| - 1e-09 38.3 0.0 1.2e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|435850621|ref|YP_007312207.1| - 0.0097 15.6 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain ApbE PF02424.10 gi|435850622|ref|YP_007312208.1| - 2.6e-73 246.4 0.0 3.2e-73 246.1 0.0 1.1 1 0 0 1 1 1 1 ApbE family Methyltransf_6 PF03737.10 gi|435850622|ref|YP_007312208.1| - 0.019 14.8 0.1 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 Demethylmenaquinone methyltransferase Cytochrome_C7 PF14522.1 gi|435850624|ref|YP_007312210.1| - 6.3e-09 35.3 34.1 0.00021 20.8 0.5 5.1 4 1 1 5 5 5 5 Cytochrome c7 Cytochrome_C554 PF13435.1 gi|435850624|ref|YP_007312210.1| - 2.9e-06 27.3 31.3 0.037 14.0 0.2 4.9 3 2 1 4 4 4 3 Cytochrome c554 and c-prime Cytochrom_CIII PF02085.11 gi|435850624|ref|YP_007312210.1| - 0.0098 15.9 34.2 0.64 10.1 3.3 5.4 4 1 1 5 5 5 3 Class III cytochrome C family DUF164 PF02591.10 gi|435850624|ref|YP_007312210.1| - 0.9 9.4 8.6 4.8 7.0 0.0 3.6 3 0 0 3 3 3 0 Putative zinc ribbon domain Cytochrom_C PF00034.16 gi|435850624|ref|YP_007312210.1| - 3 8.7 18.3 13 6.6 0.0 6.0 5 1 1 6 6 6 0 Cytochrome c SIR2 PF02146.12 gi|435850624|ref|YP_007312210.1| - 4.7 6.8 9.0 0.49 10.1 0.1 3.0 3 1 0 3 3 3 0 Sir2 family RnfC_N PF13375.1 gi|435850625|ref|YP_007312211.1| - 1.7e-20 72.6 0.3 4e-20 71.4 0.2 1.6 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Complex1_51K PF01512.12 gi|435850625|ref|YP_007312211.1| - 5.4e-19 68.4 0.0 8e-19 67.8 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit Fer4_10 PF13237.1 gi|435850625|ref|YP_007312211.1| - 1.6e-08 34.1 11.1 4.4e-08 32.7 7.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435850625|ref|YP_007312211.1| - 1.7e-08 33.9 15.5 4.7e-05 23.0 1.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435850625|ref|YP_007312211.1| - 2.4e-08 34.2 13.0 6.3e-08 32.8 9.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435850625|ref|YP_007312211.1| - 2.6e-08 33.7 35.3 7e-06 25.9 9.6 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435850625|ref|YP_007312211.1| - 1.2e-07 31.8 12.1 0.00061 20.0 1.7 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435850625|ref|YP_007312211.1| - 1.4e-07 30.8 17.0 0.00041 19.8 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|435850625|ref|YP_007312211.1| - 1.5e-07 31.6 9.7 3.3e-07 30.5 6.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435850625|ref|YP_007312211.1| - 1.6e-07 31.0 13.8 0.0014 18.8 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435850625|ref|YP_007312211.1| - 3.3e-07 30.0 8.5 0.001 18.8 1.0 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435850625|ref|YP_007312211.1| - 1.1e-06 28.2 14.9 0.0032 17.2 2.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435850625|ref|YP_007312211.1| - 1.8e-06 28.2 9.2 0.014 15.8 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435850625|ref|YP_007312211.1| - 5e-06 27.1 9.2 0.015 16.0 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|435850625|ref|YP_007312211.1| - 0.00013 22.2 20.6 0.028 14.9 5.4 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain SLBB PF10531.4 gi|435850625|ref|YP_007312211.1| - 0.00013 21.7 0.0 0.00041 20.1 0.0 1.9 1 0 0 1 1 1 1 SLBB domain NQRA PF05896.6 gi|435850625|ref|YP_007312211.1| - 0.00018 20.7 0.0 0.0003 20.0 0.0 1.2 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Fer4_20 PF14691.1 gi|435850625|ref|YP_007312211.1| - 0.33 10.5 11.8 1.7 8.2 7.1 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.1 gi|435850625|ref|YP_007312211.1| - 2.4 8.6 14.8 1.1 9.7 1.6 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain NQR2_RnfD_RnfE PF03116.10 gi|435850626|ref|YP_007312212.1| - 1.6e-64 218.0 22.0 5.2e-36 124.4 7.1 2.3 1 1 1 2 2 2 2 NQR2, RnfD, RnfE family Vma12 PF11712.3 gi|435850626|ref|YP_007312212.1| - 0.09 12.4 5.4 2.8 7.6 0.3 2.7 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase FMN_bind PF04205.9 gi|435850627|ref|YP_007312213.1| - 6.6e-16 58.2 0.6 1.1e-15 57.4 0.4 1.4 1 0 0 1 1 1 1 FMN-binding domain Rnf-Nqr PF02508.9 gi|435850628|ref|YP_007312214.1| - 1.6e-56 190.9 13.6 1.8e-56 190.7 9.4 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein HA2 PF04408.18 gi|435850628|ref|YP_007312214.1| - 0.094 12.7 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 Helicase associated domain (HA2) Rnf-Nqr PF02508.9 gi|435850629|ref|YP_007312215.1| - 1.2e-58 197.8 18.8 1.3e-58 197.7 13.0 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein Sec62 PF03839.11 gi|435850629|ref|YP_007312215.1| - 0.91 8.8 4.7 1.5 8.1 3.3 1.4 1 0 0 1 1 1 0 Translocation protein Sec62 Fer4 PF00037.22 gi|435850630|ref|YP_007312216.1| - 4.8e-17 60.7 45.9 1.1e-06 27.9 2.5 5.9 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435850630|ref|YP_007312216.1| - 2.8e-14 53.1 37.9 1.4e-07 31.6 3.8 4.1 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435850630|ref|YP_007312216.1| - 1.6e-13 50.7 24.0 1.6e-08 34.7 3.2 4.0 3 2 0 3 3 3 2 4Fe-4S dicluster domain FeS PF04060.8 gi|435850630|ref|YP_007312216.1| - 2.5e-12 46.1 1.8 2.5e-12 46.1 1.3 4.0 5 0 0 5 5 3 1 Putative Fe-S cluster Fer4_10 PF13237.1 gi|435850630|ref|YP_007312216.1| - 2.3e-11 43.2 44.1 1.1e-07 31.5 10.0 4.2 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435850630|ref|YP_007312216.1| - 1.2e-10 40.7 43.8 0.00026 20.7 1.3 5.8 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435850630|ref|YP_007312216.1| - 2.1e-10 39.9 45.0 0.00012 21.8 1.8 5.7 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435850630|ref|YP_007312216.1| - 4e-08 33.1 50.8 0.00029 20.8 9.8 3.9 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435850630|ref|YP_007312216.1| - 1.2e-07 32.3 38.4 0.017 15.8 1.3 4.9 5 0 0 5 5 5 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|435850630|ref|YP_007312216.1| - 1.1e-06 28.4 47.1 0.0022 18.1 1.0 6.1 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435850630|ref|YP_007312216.1| - 3e-06 26.9 43.6 0.00078 19.2 4.9 4.6 3 2 2 5 5 5 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435850630|ref|YP_007312216.1| - 0.0006 20.1 43.3 0.02 15.2 1.1 5.1 1 1 4 5 5 5 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|435850630|ref|YP_007312216.1| - 0.0052 17.1 41.5 0.14 12.6 0.7 4.7 5 0 0 5 5 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435850630|ref|YP_007312216.1| - 0.024 15.1 1.5 0.024 15.1 1.0 5.7 5 2 3 8 8 6 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|435850630|ref|YP_007312216.1| - 0.046 14.2 57.1 0.12 12.9 2.5 6.4 7 0 0 7 7 6 0 4Fe-4S binding domain Tic20 PF09685.5 gi|435850631|ref|YP_007312217.1| - 4.3e-11 42.7 9.7 5.2e-11 42.5 6.7 1.1 1 0 0 1 1 1 1 Tic20-like protein FA_desaturase PF00487.19 gi|435850631|ref|YP_007312217.1| - 6.6 6.0 9.5 8 5.8 6.6 1.1 1 0 0 1 1 1 0 Fatty acid desaturase DUF2207 PF09972.4 gi|435850631|ref|YP_007312217.1| - 8 4.9 6.1 8.4 4.8 4.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Rep_fac_C PF08542.6 gi|435850632|ref|YP_007312218.1| - 6.5e-22 77.3 0.0 1.4e-21 76.3 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|435850632|ref|YP_007312218.1| - 1.4e-18 67.3 0.0 1.5e-17 63.9 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|435850632|ref|YP_007312218.1| - 1.6e-17 63.5 0.0 2.5e-11 43.5 0.0 2.5 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|435850632|ref|YP_007312218.1| - 2.3e-09 36.6 0.0 1.5e-08 34.0 0.0 2.3 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|435850632|ref|YP_007312218.1| - 2.4e-08 33.1 0.0 1.6e-05 23.7 0.0 2.3 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|435850632|ref|YP_007312218.1| - 6.4e-08 32.5 0.0 1.2e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|435850632|ref|YP_007312218.1| - 3e-07 30.6 0.1 7.8e-05 22.7 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|435850632|ref|YP_007312218.1| - 2.6e-06 27.6 0.0 0.0046 17.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|435850632|ref|YP_007312218.1| - 7e-06 25.6 0.0 1.3e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|435850632|ref|YP_007312218.1| - 8.7e-06 24.6 0.0 4.7e-05 22.2 0.0 2.0 2 1 0 2 2 2 1 TIP49 C-terminus Mg_chelatase PF01078.16 gi|435850632|ref|YP_007312218.1| - 0.00011 21.4 0.0 0.014 14.5 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI ResIII PF04851.10 gi|435850632|ref|YP_007312218.1| - 0.0002 21.2 0.0 0.00053 19.8 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|435850632|ref|YP_007312218.1| - 0.00059 19.3 0.0 0.0019 17.6 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|435850632|ref|YP_007312218.1| - 0.00062 20.0 0.0 0.0039 17.4 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|435850632|ref|YP_007312218.1| - 0.00079 19.1 0.0 0.002 17.8 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|435850632|ref|YP_007312218.1| - 0.0011 19.0 0.0 0.0021 18.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|435850632|ref|YP_007312218.1| - 0.0019 17.9 0.0 0.014 15.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_11 PF13086.1 gi|435850632|ref|YP_007312218.1| - 0.0019 17.8 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|435850632|ref|YP_007312218.1| - 0.0028 17.2 0.0 0.006 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|435850632|ref|YP_007312218.1| - 0.0045 17.8 0.0 0.015 16.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|435850632|ref|YP_007312218.1| - 0.0055 16.1 0.0 2.4 7.6 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|435850632|ref|YP_007312218.1| - 0.0061 16.4 0.0 0.023 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_10 PF12846.2 gi|435850632|ref|YP_007312218.1| - 0.011 15.2 0.1 1.2 8.5 0.0 2.7 3 0 0 3 3 3 0 AAA-like domain SNF2_N PF00176.18 gi|435850632|ref|YP_007312218.1| - 0.021 13.6 0.0 0.72 8.5 0.0 2.1 1 1 1 2 2 2 0 SNF2 family N-terminal domain Viral_helicase1 PF01443.13 gi|435850632|ref|YP_007312218.1| - 0.056 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|435850632|ref|YP_007312218.1| - 0.058 12.6 0.0 3.5 6.7 0.0 2.3 1 1 0 2 2 2 0 PhoH-like protein DUF2075 PF09848.4 gi|435850632|ref|YP_007312218.1| - 0.069 12.1 0.0 0.18 10.7 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|435850632|ref|YP_007312218.1| - 0.086 13.0 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.1 gi|435850632|ref|YP_007312218.1| - 0.12 11.7 0.1 0.22 10.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain TPR_16 PF13432.1 gi|435850632|ref|YP_007312218.1| - 0.13 12.9 0.6 18 6.1 0.0 3.2 4 0 0 4 4 3 0 Tetratricopeptide repeat Sm_multidrug_ex PF06695.6 gi|435850633|ref|YP_007312219.1| - 4e-42 143.2 0.8 5.4e-42 142.7 0.5 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein PIRT PF15099.1 gi|435850633|ref|YP_007312219.1| - 0.075 12.2 1.5 0.11 11.7 1.0 1.2 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family MAPEG PF01124.13 gi|435850633|ref|YP_007312219.1| - 0.23 11.0 6.8 0.84 9.2 1.9 2.6 2 1 0 2 2 2 0 MAPEG family HXXEE PF13787.1 gi|435850633|ref|YP_007312219.1| - 9.1 6.6 8.6 1.2 9.5 2.1 2.1 1 1 1 2 2 2 0 Protein of unknown function with HXXEE motif CBFD_NFYB_HMF PF00808.18 gi|435850634|ref|YP_007312220.1| - 9.5e-16 57.6 0.1 1.2e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|435850634|ref|YP_007312220.1| - 4.4e-12 45.9 0.0 5.5e-12 45.6 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.8 gi|435850634|ref|YP_007312220.1| - 3.7e-05 23.3 0.0 4.5e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.1 gi|435850634|ref|YP_007312220.1| - 7.4e-05 22.8 0.0 8.9e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S DUF1931 PF09123.6 gi|435850634|ref|YP_007312220.1| - 0.0012 18.8 0.1 0.0012 18.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) TAF PF02969.12 gi|435850634|ref|YP_007312220.1| - 0.0041 17.0 0.2 0.0049 16.7 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-18kDa PF02269.11 gi|435850634|ref|YP_007312220.1| - 0.013 15.2 0.0 0.015 15.1 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit TFIID-31kDa PF02291.10 gi|435850634|ref|YP_007312220.1| - 0.016 14.9 0.0 0.017 14.8 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit CENP-T PF15511.1 gi|435850634|ref|YP_007312220.1| - 0.023 13.9 0.0 0.023 13.9 0.0 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T TFIID_20kDa PF03847.8 gi|435850634|ref|YP_007312220.1| - 0.052 13.8 0.1 0.06 13.6 0.0 1.2 1 0 0 1 1 1 0 Transcription initiation factor TFIID subunit A Peptidase_C39 PF03412.10 gi|435850634|ref|YP_007312220.1| - 0.067 12.9 0.0 0.072 12.8 0.0 1.1 1 0 0 1 1 1 0 Peptidase C39 family PCP_red PF08369.5 gi|435850634|ref|YP_007312220.1| - 0.082 12.7 0.4 0.52 10.2 0.1 2.0 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit DUF2703 PF10865.3 gi|435850634|ref|YP_007312220.1| - 0.14 12.1 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2703) Flavodoxin_1 PF00258.20 gi|435850635|ref|YP_007312221.1| - 5.3e-12 45.9 0.0 9.2e-12 45.1 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|435850635|ref|YP_007312221.1| - 5.5e-09 36.1 0.0 1e-08 35.2 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|435850635|ref|YP_007312221.1| - 2.7e-05 23.6 0.1 0.033 13.5 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_3 PF12641.2 gi|435850635|ref|YP_007312221.1| - 0.0014 18.0 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain PTS_IIB PF02302.12 gi|435850635|ref|YP_007312221.1| - 0.0089 16.4 0.1 0.025 15.0 0.0 1.8 2 0 0 2 2 2 1 PTS system, Lactose/Cellobiose specific IIB subunit FMN_red PF03358.10 gi|435850635|ref|YP_007312221.1| - 0.016 14.7 0.4 1.4 8.3 0.0 2.1 1 1 1 2 2 2 0 NADPH-dependent FMN reductase tRNA_anti-codon PF01336.20 gi|435850636|ref|YP_007312222.1| - 1.2e-07 31.4 1.1 0.0028 17.4 0.1 3.8 3 1 0 3 3 3 2 OB-fold nucleic acid binding domain Ribosomal_L35Ae PF01247.13 gi|435850636|ref|YP_007312222.1| - 0.2 11.4 1.0 14 5.4 0.1 2.8 3 0 0 3 3 3 0 Ribosomal protein L35Ae DeoC PF01791.4 gi|435850640|ref|YP_007312226.1| - 2.2e-44 151.5 0.0 2.7e-44 151.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AA_permease_2 PF13520.1 gi|435850641|ref|YP_007312227.1| - 1.7e-47 161.9 56.2 2.2e-47 161.5 38.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|435850641|ref|YP_007312227.1| - 4.6e-43 147.2 50.3 6.4e-43 146.7 34.9 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|435850641|ref|YP_007312227.1| - 2.9e-24 85.8 0.1 6.1e-11 42.6 0.0 2.3 2 0 0 2 2 2 2 Universal stress protein family IRF PF00605.12 gi|435850642|ref|YP_007312228.1| - 0.014 15.1 0.4 5.6 6.7 0.0 2.6 2 1 0 2 2 2 0 Interferon regulatory factor transcription factor DUF3823 PF12866.2 gi|435850642|ref|YP_007312228.1| - 0.048 13.1 2.3 1.1 8.7 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3823) UPF0150 PF03681.10 gi|435850642|ref|YP_007312228.1| - 0.084 12.5 0.4 0.23 11.1 0.3 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) AMH_N PF04709.7 gi|435850643|ref|YP_007312229.1| - 0.002 17.1 0.1 0.0026 16.7 0.1 1.1 1 0 0 1 1 1 1 Anti-Mullerian hormone, N terminal region Metallophos_2 PF12850.2 gi|435850645|ref|YP_007312231.1| - 2.3e-27 95.7 0.0 2.7e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|435850645|ref|YP_007312231.1| - 0.00011 21.6 0.8 0.0031 16.9 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase MarR_2 PF12802.2 gi|435850646|ref|YP_007312232.1| - 5e-10 38.9 0.0 1.2e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|435850646|ref|YP_007312232.1| - 1.8e-09 36.8 0.1 6.2e-09 35.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|435850646|ref|YP_007312232.1| - 1.9e-07 31.3 0.0 6.9e-07 29.4 0.0 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|435850646|ref|YP_007312232.1| - 1.9e-07 30.6 0.2 6.7e-07 28.9 0.0 2.0 3 0 0 3 3 1 1 MarR family HTH_Crp_2 PF13545.1 gi|435850646|ref|YP_007312232.1| - 7.6e-07 28.8 0.1 6.7e-06 25.7 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|435850646|ref|YP_007312232.1| - 2.3e-06 27.1 0.1 5.1e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|435850646|ref|YP_007312232.1| - 9.3e-05 22.4 0.1 0.00024 21.1 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.1 gi|435850646|ref|YP_007312232.1| - 0.0001 22.0 0.0 0.00023 20.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_3 PF01381.17 gi|435850646|ref|YP_007312232.1| - 0.0002 21.1 0.1 0.0017 18.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix Fe_dep_repress PF01325.14 gi|435850646|ref|YP_007312232.1| - 0.00024 20.9 0.1 0.00058 19.7 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|435850646|ref|YP_007312232.1| - 0.0003 20.1 0.1 0.00084 18.7 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|435850646|ref|YP_007312232.1| - 0.00057 19.4 0.0 0.0013 18.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|435850646|ref|YP_007312232.1| - 0.0024 17.4 0.0 0.0052 16.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.15 gi|435850646|ref|YP_007312232.1| - 0.004 16.7 0.0 0.0095 15.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|435850646|ref|YP_007312232.1| - 0.0043 17.0 0.0 0.014 15.4 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|435850646|ref|YP_007312232.1| - 0.0045 16.6 0.1 0.012 15.3 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|435850646|ref|YP_007312232.1| - 0.0055 16.8 0.0 0.018 15.1 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain Mnd1 PF03962.10 gi|435850646|ref|YP_007312232.1| - 0.0086 15.7 0.1 0.016 14.8 0.0 1.4 1 1 0 1 1 1 1 Mnd1 family HTH_13 PF11972.3 gi|435850646|ref|YP_007312232.1| - 0.012 15.4 0.0 0.037 13.8 0.0 1.9 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.1 gi|435850646|ref|YP_007312232.1| - 0.016 15.3 0.1 0.036 14.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix EAP30 PF04157.11 gi|435850646|ref|YP_007312232.1| - 0.017 14.3 0.1 0.12 11.4 0.0 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family DUF4423 PF14394.1 gi|435850646|ref|YP_007312232.1| - 0.02 14.4 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_10 PF04967.7 gi|435850646|ref|YP_007312232.1| - 0.027 14.0 0.0 0.073 12.6 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain KorB PF08535.5 gi|435850646|ref|YP_007312232.1| - 0.028 14.5 0.0 0.089 12.9 0.0 1.9 1 0 0 1 1 1 0 KorB domain HTH_20 PF12840.2 gi|435850646|ref|YP_007312232.1| - 0.029 14.1 0.0 0.07 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|435850646|ref|YP_007312232.1| - 0.034 14.1 0.1 0.061 13.2 0.1 1.4 1 0 0 1 1 1 0 Transposase Mrr_N PF14338.1 gi|435850646|ref|YP_007312232.1| - 0.046 13.8 0.1 0.42 10.7 0.1 2.3 2 1 0 2 2 2 0 Mrr N-terminal domain DUF387 PF04079.11 gi|435850646|ref|YP_007312232.1| - 0.066 12.5 0.1 0.15 11.4 0.1 1.6 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_AsnC-type PF13404.1 gi|435850646|ref|YP_007312232.1| - 0.095 12.2 0.0 0.36 10.4 0.0 2.0 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain HTH_38 PF13936.1 gi|435850646|ref|YP_007312232.1| - 0.095 12.2 0.2 0.27 10.8 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|435850646|ref|YP_007312232.1| - 0.1 12.7 0.3 0.36 11.0 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein HemN_C PF06969.11 gi|435850646|ref|YP_007312232.1| - 0.14 12.2 0.0 0.45 10.6 0.0 1.9 1 0 0 1 1 1 0 HemN C-terminal domain ArsR PF09824.4 gi|435850647|ref|YP_007312233.1| - 3.1e-71 237.8 0.4 3.6e-71 237.6 0.3 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator Glyco_hydro_26 PF02156.10 gi|435850647|ref|YP_007312233.1| - 0.001 18.6 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 DUF387 PF04079.11 gi|435850647|ref|YP_007312233.1| - 0.0099 15.2 0.0 0.2 10.9 0.0 2.2 2 0 0 2 2 2 1 Putative transcriptional regulators (Ypuh-like) DUF3418 PF11898.3 gi|435850647|ref|YP_007312233.1| - 0.044 12.1 0.0 0.047 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3418) LMWPc PF01451.16 gi|435850647|ref|YP_007312233.1| - 0.094 13.0 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Low molecular weight phosphotyrosine protein phosphatase SlyX PF04102.7 gi|435850647|ref|YP_007312233.1| - 0.12 12.7 0.4 2.6 8.4 0.0 2.4 1 1 1 2 2 2 0 SlyX UPF0066 PF01980.11 gi|435850649|ref|YP_007312235.1| - 3.3e-26 91.5 0.0 4.2e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 CN_hydrolase PF00795.17 gi|435850650|ref|YP_007312236.1| - 2e-26 92.5 0.0 2.5e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase PHP PF02811.14 gi|435850651|ref|YP_007312237.1| - 1.7e-16 60.5 0.1 2.3e-16 60.0 0.1 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|435850651|ref|YP_007312237.1| - 0.047 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 PHP-associated TPR_12 PF13424.1 gi|435850653|ref|YP_007312239.1| - 7.7e-40 134.7 42.4 5e-07 29.5 0.1 11.5 8 4 2 10 10 10 8 Tetratricopeptide repeat TPR_11 PF13414.1 gi|435850653|ref|YP_007312239.1| - 7.3e-26 89.6 32.6 5.8e-05 22.6 0.3 8.8 7 1 1 8 8 8 6 TPR repeat TPR_10 PF13374.1 gi|435850653|ref|YP_007312239.1| - 3.3e-20 71.3 32.9 1.7e-05 24.5 0.5 10.9 12 0 0 12 12 11 5 Tetratricopeptide repeat TPR_2 PF07719.12 gi|435850653|ref|YP_007312239.1| - 8e-18 62.8 36.5 0.044 13.7 0.2 13.2 14 0 0 14 14 13 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|435850653|ref|YP_007312239.1| - 2.3e-14 52.3 31.5 0.027 14.0 0.1 11.0 12 0 0 12 12 11 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435850653|ref|YP_007312239.1| - 1.4e-13 51.1 23.6 0.066 13.9 0.2 10.5 7 4 3 10 10 10 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435850653|ref|YP_007312239.1| - 3e-11 42.8 29.1 1 10.2 0.1 13.2 9 5 5 14 14 13 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435850653|ref|YP_007312239.1| - 1.2e-08 34.1 27.8 1.3 9.0 0.0 11.8 14 0 0 14 14 13 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435850653|ref|YP_007312239.1| - 3.3e-08 33.1 22.4 0.86 9.9 0.0 10.9 12 1 0 12 12 9 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|435850653|ref|YP_007312239.1| - 1.2e-07 31.4 6.4 2.9 8.5 0.0 8.2 8 0 0 8 8 7 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|435850653|ref|YP_007312239.1| - 6.3e-06 26.3 33.1 1.3 9.6 0.1 12.0 13 1 0 13 13 11 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435850653|ref|YP_007312239.1| - 8.9e-05 22.0 35.9 4.5 7.2 0.1 11.5 12 0 0 12 12 11 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435850653|ref|YP_007312239.1| - 0.00036 20.7 38.0 0.94 9.8 0.2 10.2 7 4 5 12 12 12 2 Tetratricopeptide repeat DUF2225 PF09986.4 gi|435850653|ref|YP_007312239.1| - 0.00045 19.7 21.3 0.22 10.9 0.3 5.4 4 2 2 6 6 6 4 Uncharacterized protein conserved in bacteria (DUF2225) TOM20_plant PF06552.7 gi|435850653|ref|YP_007312239.1| - 0.00049 19.7 4.8 0.62 9.6 0.1 4.0 3 1 0 3 3 3 2 Plant specific mitochondrial import receptor subunit TOM20 MIT PF04212.13 gi|435850653|ref|YP_007312239.1| - 0.00096 18.9 26.2 1.1 9.1 0.0 8.9 7 2 3 10 10 9 1 MIT (microtubule interacting and transport) domain SAC3_GANP PF03399.11 gi|435850653|ref|YP_007312239.1| - 0.0029 17.2 4.9 0.14 11.6 0.5 3.0 1 1 1 2 2 2 2 SAC3/GANP/Nin1/mts3/eIF-3 p25 family HHH_8 PF14716.1 gi|435850653|ref|YP_007312239.1| - 0.0079 16.3 3.6 0.77 9.9 0.0 4.9 3 1 2 5 5 5 1 Helix-hairpin-helix domain Fes1 PF08609.5 gi|435850653|ref|YP_007312239.1| - 0.37 11.3 7.4 5 7.6 0.1 3.7 3 1 1 4 4 3 0 Nucleotide exchange factor Fes1 PPR_2 PF13041.1 gi|435850653|ref|YP_007312239.1| - 9.3 6.3 10.2 27 4.8 0.0 5.4 7 0 0 7 7 4 0 PPR repeat family Aldolase_II PF00596.16 gi|435850654|ref|YP_007312240.1| - 8.7e-35 119.9 0.1 9.7e-35 119.8 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain 3Beta_HSD PF01073.14 gi|435850654|ref|YP_007312240.1| - 0.012 14.3 0.1 0.021 13.5 0.1 1.4 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family CDP-OH_P_transf PF01066.16 gi|435850655|ref|YP_007312241.1| - 4.3e-12 46.2 14.6 3.6e-11 43.2 9.6 2.2 1 1 1 2 2 2 1 CDP-alcohol phosphatidyltransferase Archease PF01951.11 gi|435850656|ref|YP_007312242.1| - 5.2e-45 152.7 0.8 5.8e-45 152.6 0.6 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) UPF0150 PF03681.10 gi|435850656|ref|YP_007312242.1| - 0.059 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) Jag_N PF14804.1 gi|435850656|ref|YP_007312242.1| - 0.16 11.9 0.1 0.4 10.7 0.0 1.7 2 0 0 2 2 2 0 Jag N-terminus RtcB PF01139.12 gi|435850657|ref|YP_007312243.1| - 2.9e-154 514.0 0.0 3.3e-154 513.9 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB TGT_C2 PF14810.1 gi|435850658|ref|YP_007312244.1| - 2.4e-31 107.4 0.0 5e-31 106.3 0.0 1.6 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|435850658|ref|YP_007312244.1| - 2.5e-14 52.7 0.0 4.6e-14 51.9 0.0 1.4 1 0 0 1 1 1 1 PUA domain Bactofilin PF04519.8 gi|435850659|ref|YP_007312245.1| - 7.1e-12 45.2 11.5 1.2e-06 28.3 1.2 3.8 2 2 2 4 4 4 4 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|435850659|ref|YP_007312245.1| - 0.032 13.7 25.9 0.3 10.6 0.4 6.7 6 1 2 8 8 8 0 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.3 gi|435850659|ref|YP_007312245.1| - 0.13 11.8 0.0 0.61 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3494) DUF2721 PF11026.3 gi|435850660|ref|YP_007312246.1| - 1.3 8.7 13.2 0.24 11.0 6.5 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) Aminotran_3 PF00202.16 gi|435850661|ref|YP_007312247.1| - 7.4e-112 373.5 0.4 8.9e-112 373.2 0.3 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|435850661|ref|YP_007312247.1| - 5.5e-08 32.3 0.1 3.9e-07 29.5 0.0 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|435850661|ref|YP_007312247.1| - 0.00061 18.1 0.0 0.00099 17.4 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|435850661|ref|YP_007312247.1| - 0.0018 17.4 0.3 0.27 10.2 0.0 2.3 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|435850661|ref|YP_007312247.1| - 0.0063 15.5 0.0 0.015 14.2 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_1_2 PF00155.16 gi|435850662|ref|YP_007312248.1| - 2.3e-56 191.3 0.0 2.6e-56 191.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|435850662|ref|YP_007312248.1| - 1.5e-08 34.0 0.0 2.2e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|435850662|ref|YP_007312248.1| - 1.2e-05 24.2 0.0 0.00013 20.8 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|435850662|ref|YP_007312248.1| - 0.00025 19.4 0.1 0.00062 18.1 0.0 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|435850662|ref|YP_007312248.1| - 0.0054 15.4 0.0 0.011 14.4 0.0 1.5 2 0 0 2 2 2 1 Allinase DUF381 PF04038.7 gi|435850663|ref|YP_007312249.1| - 1.8e-24 85.5 0.6 2.5e-24 85.1 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|435850663|ref|YP_007312249.1| - 1.2e-21 75.8 0.0 1.7e-21 75.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF372) CDP-OH_P_transf PF01066.16 gi|435850664|ref|YP_007312250.1| - 1.4e-11 44.6 6.0 1.4e-11 44.6 4.2 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PS_Dcarbxylase PF02666.10 gi|435850665|ref|YP_007312251.1| - 9.4e-32 109.9 1.3 1.4e-27 96.2 0.3 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase PsbT PF01405.12 gi|435850665|ref|YP_007312251.1| - 0.011 15.3 2.2 0.017 14.6 1.5 1.4 1 0 0 1 1 1 0 Photosystem II reaction centre T protein Peptidase_M23 PF01551.17 gi|435850665|ref|YP_007312251.1| - 0.11 12.6 0.1 1.1 9.3 0.0 2.7 1 1 1 2 2 2 0 Peptidase family M23 Biotin_lipoyl_2 PF13533.1 gi|435850665|ref|YP_007312251.1| - 0.13 11.9 0.2 0.92 9.2 0.0 2.3 2 0 0 2 2 2 0 Biotin-lipoyl like DUF4131 PF13567.1 gi|435850665|ref|YP_007312251.1| - 0.14 11.5 0.2 0.19 11.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Exosortase_EpsH PF09721.5 gi|435850666|ref|YP_007312252.1| - 6.6e-49 166.4 22.6 8.2e-49 166.1 15.6 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) NUDIX PF00293.23 gi|435850667|ref|YP_007312253.1| - 1.8e-18 66.4 0.0 2.1e-18 66.2 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain TFIIS_C PF01096.13 gi|435850668|ref|YP_007312254.1| - 1.8e-18 65.8 15.6 1.5e-17 62.9 3.0 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|435850668|ref|YP_007312254.1| - 9e-07 28.4 7.5 0.00025 20.6 0.5 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.2 gi|435850668|ref|YP_007312254.1| - 1e-06 28.4 5.4 0.0065 16.2 0.7 2.2 2 0 0 2 2 2 2 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|435850668|ref|YP_007312254.1| - 2.1e-06 27.2 1.4 2.1e-06 27.2 1.0 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|435850668|ref|YP_007312254.1| - 2e-05 24.3 13.2 0.00028 20.6 0.7 2.9 2 1 1 3 3 3 2 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|435850668|ref|YP_007312254.1| - 0.00067 19.5 8.6 1.7 8.6 0.1 4.2 4 0 0 4 4 4 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|435850668|ref|YP_007312254.1| - 0.0023 17.2 14.2 0.0059 15.9 1.6 3.2 2 2 0 2 2 2 1 TFIIB zinc-binding UPF0547 PF10571.4 gi|435850668|ref|YP_007312254.1| - 0.0025 17.4 11.7 0.0049 16.5 0.0 3.7 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|435850668|ref|YP_007312254.1| - 0.0033 16.8 15.9 0.3 10.6 0.1 3.5 3 1 0 3 3 3 2 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|435850668|ref|YP_007312254.1| - 0.01 15.5 7.5 1.3 8.7 1.1 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Ogr_Delta PF04606.7 gi|435850668|ref|YP_007312254.1| - 0.012 15.2 1.0 0.012 15.2 0.7 3.1 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger DNA_RNApol_7kD PF03604.8 gi|435850668|ref|YP_007312254.1| - 0.018 14.5 10.3 0.066 12.6 0.0 3.5 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|435850668|ref|YP_007312254.1| - 0.024 14.2 18.5 0.3 10.7 0.4 4.7 5 0 0 5 5 5 0 zinc-ribbon domain WSS_VP PF12175.3 gi|435850668|ref|YP_007312254.1| - 0.024 13.7 0.0 0.031 13.3 0.0 1.1 1 0 0 1 1 1 0 White spot syndrome virus structural envelope protein VP RRN7 PF11781.3 gi|435850668|ref|YP_007312254.1| - 0.038 13.4 10.7 0.19 11.2 0.4 3.5 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-Mss51 PF13824.1 gi|435850668|ref|YP_007312254.1| - 0.044 13.6 0.3 0.044 13.6 0.2 2.8 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.1 gi|435850668|ref|YP_007312254.1| - 0.045 13.4 11.5 1.1 8.9 0.5 3.9 3 1 0 3 3 3 0 Nudix N-terminal DUF2296 PF10058.4 gi|435850668|ref|YP_007312254.1| - 0.057 13.1 9.7 5.6 6.7 0.1 4.5 4 1 1 5 5 5 0 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_4 PF13717.1 gi|435850668|ref|YP_007312254.1| - 0.07 12.8 19.3 0.39 10.4 0.6 4.5 5 0 0 5 5 5 0 zinc-ribbon domain CpXC PF14353.1 gi|435850668|ref|YP_007312254.1| - 0.081 12.8 0.1 0.081 12.8 0.1 2.9 3 1 0 3 3 3 0 CpXC protein zinc-ribbons_6 PF07191.7 gi|435850668|ref|YP_007312254.1| - 0.09 12.5 0.9 0.09 12.5 0.6 2.9 2 2 0 2 2 2 0 zinc-ribbons GFA PF04828.9 gi|435850668|ref|YP_007312254.1| - 0.11 12.4 0.3 0.11 12.4 0.2 2.9 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Terminase_GpA PF05876.7 gi|435850668|ref|YP_007312254.1| - 0.12 10.7 4.2 0.031 12.6 0.7 1.6 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) zf-DNA_Pol PF08996.5 gi|435850668|ref|YP_007312254.1| - 0.14 11.4 0.1 0.14 11.4 0.1 2.4 2 1 0 2 2 2 0 DNA Polymerase alpha zinc finger DNA_ligase_ZBD PF03119.11 gi|435850668|ref|YP_007312254.1| - 0.15 11.8 3.8 0.69 9.6 0.2 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Lar_restr_allev PF14354.1 gi|435850668|ref|YP_007312254.1| - 0.15 12.3 8.5 0.16 12.2 0.3 2.9 2 1 0 2 2 2 0 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.7 gi|435850668|ref|YP_007312254.1| - 0.23 11.2 13.0 5.5 6.8 1.6 3.7 2 2 0 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|435850668|ref|YP_007312254.1| - 0.34 10.1 18.2 0.52 9.6 0.2 3.7 3 1 0 3 3 3 0 zinc-ribbon domain zf-RING_UBOX PF13445.1 gi|435850668|ref|YP_007312254.1| - 0.47 10.2 4.2 9.2 6.0 0.0 2.3 2 0 0 2 2 2 0 RING-type zinc-finger DUF2387 PF09526.5 gi|435850668|ref|YP_007312254.1| - 0.51 10.2 8.9 0.93 9.4 0.1 3.0 2 2 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-AN1 PF01428.11 gi|435850668|ref|YP_007312254.1| - 0.77 9.6 11.3 2 8.3 2.1 3.0 3 0 0 3 3 3 0 AN1-like Zinc finger Opy2 PF09463.5 gi|435850668|ref|YP_007312254.1| - 0.78 9.8 11.1 0.68 10.0 0.4 3.0 3 0 0 3 3 3 0 Opy2 protein Rubredoxin PF00301.15 gi|435850668|ref|YP_007312254.1| - 0.92 9.4 7.0 30 4.5 0.0 3.9 4 0 0 4 4 4 0 Rubredoxin ArfGap PF01412.13 gi|435850668|ref|YP_007312254.1| - 0.98 9.2 3.8 2.3 8.0 0.4 2.2 2 0 0 2 2 2 0 Putative GTPase activating protein for Arf zf-C2H2_4 PF13894.1 gi|435850668|ref|YP_007312254.1| - 1.5 9.3 10.3 27 5.3 0.1 4.1 4 0 0 4 4 4 0 C2H2-type zinc finger DiS_P_DiS PF06750.8 gi|435850668|ref|YP_007312254.1| - 2.6 7.8 0.0 2.6 7.8 0.0 2.8 3 1 0 3 3 2 0 Bacterial Peptidase A24 N-terminal domain HypA PF01155.14 gi|435850668|ref|YP_007312254.1| - 2.6 7.7 9.9 1.3 8.7 0.5 2.8 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|435850668|ref|YP_007312254.1| - 2.6 8.0 11.2 4.2 7.4 0.1 3.8 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 PolC_DP2 PF03833.8 gi|435850668|ref|YP_007312254.1| - 2.9 5.4 4.4 4.1 4.9 2.4 1.7 1 1 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-C4_Topoisom PF01396.14 gi|435850668|ref|YP_007312254.1| - 3.5 7.1 12.7 3.3 7.2 0.0 3.7 4 1 1 5 5 4 0 Topoisomerase DNA binding C4 zinc finger A2L_zn_ribbon PF08792.5 gi|435850668|ref|YP_007312254.1| - 4 7.0 15.1 28 4.3 0.0 4.0 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-trcl PF13451.1 gi|435850668|ref|YP_007312254.1| - 4.2 7.0 8.9 8.2 6.1 0.0 3.7 4 0 0 4 4 4 0 Probable zinc-binding domain Baculo_LEF5_C PF11792.3 gi|435850668|ref|YP_007312254.1| - 6 6.3 12.1 0.54 9.6 1.0 3.2 3 1 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-ISL3 PF14690.1 gi|435850668|ref|YP_007312254.1| - 6.6 6.8 14.2 3.4 7.7 0.0 3.8 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.1 gi|435850668|ref|YP_007312254.1| - 7.7 5.8 13.8 5.2 6.3 1.6 3.2 2 2 0 2 2 2 0 Transcription factor zinc-finger zf-ZPR1 PF03367.8 gi|435850668|ref|YP_007312254.1| - 7.9 5.6 6.4 15 4.6 0.2 2.5 1 1 0 2 2 2 0 ZPR1 zinc-finger domain FYVE PF01363.16 gi|435850668|ref|YP_007312254.1| - 9.4 6.2 9.9 1.7e+02 2.2 6.9 2.6 1 1 0 1 1 1 0 FYVE zinc finger PCNA_N PF00705.13 gi|435850669|ref|YP_007312255.1| - 6.2e-16 58.0 1.2 9.4e-15 54.2 0.2 2.5 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|435850669|ref|YP_007312255.1| - 2.1e-09 37.3 0.1 1.8e-08 34.3 0.0 2.3 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|435850669|ref|YP_007312255.1| - 0.00039 19.6 0.0 0.0093 15.1 0.0 2.1 2 0 0 2 2 2 1 Rad9 Rad1 PF02144.11 gi|435850669|ref|YP_007312255.1| - 0.0078 15.0 0.1 0.15 10.7 0.0 2.1 1 1 1 2 2 2 1 Repair protein Rad1/Rec1/Rad17 DNA_primase_lrg PF04104.9 gi|435850670|ref|YP_007312256.1| - 1.7e-39 135.6 0.0 3.7e-39 134.5 0.0 1.4 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PspA_IM30 PF04012.7 gi|435850671|ref|YP_007312257.1| - 4.8e-26 91.5 31.6 5.3e-26 91.3 21.9 1.0 1 0 0 1 1 1 1 PspA/IM30 family Flagellin_C PF00700.16 gi|435850671|ref|YP_007312257.1| - 1.3e-05 25.2 12.3 0.034 14.3 0.1 3.5 3 0 0 3 3 3 2 Bacterial flagellin C-terminal helical region DUF1664 PF07889.7 gi|435850671|ref|YP_007312257.1| - 0.023 14.5 15.0 0.3 10.8 2.6 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Snf7 PF03357.16 gi|435850671|ref|YP_007312257.1| - 0.032 13.6 30.9 0.23 10.8 18.0 3.0 1 1 1 2 2 2 0 Snf7 Reo_sigmaC PF04582.7 gi|435850671|ref|YP_007312257.1| - 0.041 13.0 11.3 0.29 10.2 2.9 2.3 1 1 1 2 2 2 0 Reovirus sigma C capsid protein NOG1 PF06858.9 gi|435850671|ref|YP_007312257.1| - 0.061 13.2 0.0 0.24 11.3 0.0 2.0 2 0 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) DUF342 PF03961.8 gi|435850671|ref|YP_007312257.1| - 0.41 9.0 18.8 0.058 11.7 8.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Baculo_PEP_C PF04513.7 gi|435850671|ref|YP_007312257.1| - 0.47 10.2 13.4 4.2 7.1 1.2 3.2 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF743 PF05332.6 gi|435850671|ref|YP_007312257.1| - 0.52 10.2 9.3 1.2e+02 2.6 6.3 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF743) DUF972 PF06156.8 gi|435850671|ref|YP_007312257.1| - 0.86 9.9 19.8 1.1 9.6 2.3 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF972) ORF6C PF10552.4 gi|435850671|ref|YP_007312257.1| - 2.2 8.0 15.6 0.37 10.5 1.6 3.0 1 1 3 4 4 4 0 ORF6C domain COG5 PF10392.4 gi|435850671|ref|YP_007312257.1| - 3 7.8 12.7 0.94 9.4 5.2 2.7 1 1 0 2 2 2 0 Golgi transport complex subunit 5 DUF2937 PF11157.3 gi|435850671|ref|YP_007312257.1| - 3.7 6.8 7.7 19 4.5 5.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2937) DUF3584 PF12128.3 gi|435850671|ref|YP_007312257.1| - 4.6 4.4 27.9 0.24 8.6 11.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) DivIC PF04977.10 gi|435850671|ref|YP_007312257.1| - 5.1 6.6 26.3 0.64 9.5 2.5 4.2 3 1 1 4 4 4 0 Septum formation initiator V_ATPase_I PF01496.14 gi|435850671|ref|YP_007312257.1| - 5.8 4.6 18.2 1.5 6.5 2.7 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family APG6 PF04111.7 gi|435850671|ref|YP_007312257.1| - 6.9 5.6 29.5 0.39 9.7 12.1 2.2 1 1 1 2 2 2 0 Autophagy protein Apg6 MbeD_MobD PF04899.7 gi|435850671|ref|YP_007312257.1| - 9.9 6.1 11.5 4.8 7.1 2.8 2.9 2 1 1 3 3 2 0 MbeD/MobD like Peptidase_M48 PF01435.13 gi|435850674|ref|YP_007312260.1| - 1e-41 142.9 0.0 1.4e-41 142.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|435850674|ref|YP_007312260.1| - 6.6e-07 28.5 0.3 3.4e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|435850674|ref|YP_007312260.1| - 0.042 13.8 0.0 0.073 13.1 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily Polysacc_synt_3 PF13440.1 gi|435850674|ref|YP_007312260.1| - 0.18 11.2 15.2 0.8 9.1 3.4 2.2 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein GATase_3 PF07685.9 gi|435850675|ref|YP_007312261.1| - 1.4e-29 102.7 0.0 2e-29 102.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|435850675|ref|YP_007312261.1| - 3e-26 92.0 0.1 4.7e-26 91.4 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|435850675|ref|YP_007312261.1| - 1.4e-19 70.5 1.5 9.2e-12 44.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF1611 PF07755.6 gi|435850675|ref|YP_007312261.1| - 0.003 16.2 0.3 0.005 15.5 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) VirC1 PF07015.6 gi|435850675|ref|YP_007312261.1| - 0.065 12.2 0.1 0.11 11.5 0.1 1.3 1 0 0 1 1 1 0 VirC1 protein CobA_CobO_BtuR PF02572.10 gi|435850675|ref|YP_007312261.1| - 0.21 11.1 0.7 0.35 10.4 0.5 1.3 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Radical_SAM PF04055.16 gi|435850676|ref|YP_007312262.1| - 6e-31 107.8 0.0 2.6e-30 105.7 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|435850676|ref|YP_007312262.1| - 4.2e-23 81.4 0.0 6.3e-23 80.8 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|435850676|ref|YP_007312262.1| - 1.4e-07 31.6 0.0 2.6e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|435850676|ref|YP_007312262.1| - 4.3e-07 29.9 0.0 8.1e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PA-IIL PF07472.6 gi|435850677|ref|YP_007312263.1| - 0.0018 18.4 0.0 0.0019 18.3 0.0 1.0 1 0 0 1 1 1 1 Fucose-binding lectin II (PA-IIL) DUF4444 PF14563.1 gi|435850677|ref|YP_007312263.1| - 0.066 12.6 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4444) SurE PF01975.12 gi|435850678|ref|YP_007312264.1| - 2e-59 200.2 0.1 2.5e-59 199.8 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE AAA_23 PF13476.1 gi|435850679|ref|YP_007312265.1| - 0.23 11.7 4.6 0.27 11.5 3.2 1.1 1 0 0 1 1 1 0 AAA domain DUF848 PF05852.6 gi|435850679|ref|YP_007312265.1| - 0.41 10.4 5.2 0.36 10.6 2.7 1.5 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) tRNA-synt_2c PF01411.14 gi|435850681|ref|YP_007312267.1| - 2.5e-130 435.3 0.0 3.3e-130 435.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|435850681|ref|YP_007312267.1| - 9.1e-12 44.6 0.2 1.7e-11 43.8 0.2 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|435850681|ref|YP_007312267.1| - 1.8e-07 30.7 6.6 6.4e-07 28.9 4.6 2.0 1 0 0 1 1 1 1 DHHA1 domain P5CR_dimer PF14748.1 gi|435850681|ref|YP_007312267.1| - 0.03 14.3 0.0 0.079 12.9 0.0 1.6 1 0 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation DUF3232 PF11554.3 gi|435850681|ref|YP_007312267.1| - 0.034 14.0 0.9 0.38 10.6 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3232) Response_reg PF00072.19 gi|435850682|ref|YP_007312268.1| - 5.3e-29 100.4 1.6 6.2e-29 100.2 0.4 1.7 2 0 0 2 2 2 1 Response regulator receiver domain Peripla_BP_2 PF01497.13 gi|435850682|ref|YP_007312268.1| - 0.084 11.9 0.2 0.54 9.3 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding protein Methyltransf_15 PF09445.5 gi|435850683|ref|YP_007312269.1| - 3.7e-12 46.1 0.0 6.3e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|435850683|ref|YP_007312269.1| - 7.3e-11 42.6 0.1 1.5e-10 41.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435850683|ref|YP_007312269.1| - 7.9e-10 38.8 0.0 1.5e-09 37.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435850683|ref|YP_007312269.1| - 9.9e-10 38.1 0.0 2.3e-09 37.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|435850683|ref|YP_007312269.1| - 1.6e-05 25.3 0.0 7.4e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|435850683|ref|YP_007312269.1| - 5.9e-05 22.5 0.0 9.4e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|435850683|ref|YP_007312269.1| - 0.00021 20.3 0.0 0.0028 16.7 0.0 2.2 2 0 0 2 2 2 1 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|435850683|ref|YP_007312269.1| - 0.00063 18.5 0.0 0.0012 17.5 0.0 1.4 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Cons_hypoth95 PF03602.10 gi|435850683|ref|YP_007312269.1| - 0.0011 18.4 0.0 0.002 17.5 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|435850683|ref|YP_007312269.1| - 0.0012 18.5 0.0 0.0025 17.4 0.0 1.5 1 0 0 1 1 1 1 Met-10+ like-protein RrnaAD PF00398.15 gi|435850683|ref|YP_007312269.1| - 0.009 15.0 0.0 0.015 14.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|435850683|ref|YP_007312269.1| - 0.014 14.4 0.0 0.024 13.7 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|435850683|ref|YP_007312269.1| - 0.014 15.8 0.0 0.34 11.4 0.0 2.6 1 1 1 2 2 2 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|435850683|ref|YP_007312269.1| - 0.028 15.2 0.0 0.059 14.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|435850683|ref|YP_007312269.1| - 0.15 11.6 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Arch_fla_DE PF04659.8 gi|435850684|ref|YP_007312270.1| - 1.2e-30 105.2 1.6 1.7e-30 104.7 0.0 2.0 3 0 0 3 3 1 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|435850684|ref|YP_007312270.1| - 4.9e-15 55.1 3.5 4.9e-15 55.1 2.4 4.2 4 1 1 5 5 5 1 Flagella accessory protein C (FlaC) Tropomyosin PF00261.15 gi|435850684|ref|YP_007312270.1| - 0.00071 18.7 7.3 0.0068 15.5 0.5 2.9 2 1 0 2 2 2 1 Tropomyosin NPV_P10 PF05531.7 gi|435850684|ref|YP_007312270.1| - 0.016 15.4 3.4 0.71 10.1 0.0 3.6 3 1 1 4 4 3 0 Nucleopolyhedrovirus P10 protein AKNA PF12443.3 gi|435850684|ref|YP_007312270.1| - 0.025 14.5 0.0 0.13 12.2 0.0 2.2 1 1 1 2 2 2 0 AT-hook-containing transcription factor AAA_13 PF13166.1 gi|435850684|ref|YP_007312270.1| - 0.1 11.0 8.4 0.018 13.5 2.7 1.7 1 1 1 2 2 2 0 AAA domain Spc7 PF08317.6 gi|435850684|ref|YP_007312270.1| - 0.12 10.9 10.3 0.69 8.5 0.1 2.5 1 1 1 2 2 2 0 Spc7 kinetochore protein Spectrin PF00435.16 gi|435850684|ref|YP_007312270.1| - 0.17 12.2 1.7 2.2 8.6 0.1 2.6 2 0 0 2 2 2 0 Spectrin repeat AATF-Che1 PF13339.1 gi|435850684|ref|YP_007312270.1| - 0.29 11.2 2.6 1.4 9.0 1.0 2.6 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor bZIP_1 PF00170.16 gi|435850684|ref|YP_007312270.1| - 0.48 10.4 6.5 6.1 6.8 0.1 2.8 2 0 0 2 2 2 0 bZIP transcription factor Myosin_tail_1 PF01576.14 gi|435850684|ref|YP_007312270.1| - 0.53 7.9 8.7 0.081 10.6 0.5 2.1 2 0 0 2 2 2 0 Myosin tail Sec34 PF04136.10 gi|435850684|ref|YP_007312270.1| - 0.71 9.5 4.4 0.82 9.3 0.4 2.4 2 1 0 2 2 2 0 Sec34-like family Tropomyosin_1 PF12718.2 gi|435850684|ref|YP_007312270.1| - 0.81 9.5 9.0 4.1 7.2 0.6 2.4 2 0 0 2 2 2 0 Tropomyosin like MCPsignal PF00015.16 gi|435850684|ref|YP_007312270.1| - 0.85 9.1 11.1 0.38 10.2 2.8 2.3 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain MitMem_reg PF13012.1 gi|435850684|ref|YP_007312270.1| - 1.1 9.3 5.3 2.4 8.2 0.2 3.1 2 1 1 3 3 3 0 Maintenance of mitochondrial structure and function Laminin_II PF06009.7 gi|435850684|ref|YP_007312270.1| - 1.3 8.8 13.2 0.23 11.2 1.5 3.1 4 0 0 4 4 4 0 Laminin Domain II Reo_sigmaC PF04582.7 gi|435850684|ref|YP_007312270.1| - 1.7 7.7 8.0 0.7 9.0 2.6 1.9 1 1 1 2 2 2 0 Reovirus sigma C capsid protein DUF948 PF06103.6 gi|435850684|ref|YP_007312270.1| - 2.5 8.0 6.9 2.8 7.8 0.8 3.0 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) CENP-F_leu_zip PF10473.4 gi|435850684|ref|YP_007312270.1| - 2.6 7.8 10.0 0.5 10.2 0.8 2.6 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Allexi_40kDa PF05549.6 gi|435850684|ref|YP_007312270.1| - 3.2 6.9 5.8 1.8 7.7 1.7 2.2 1 1 0 2 2 2 0 Allexivirus 40kDa protein DUF4200 PF13863.1 gi|435850684|ref|YP_007312270.1| - 3.8 7.4 8.2 2.2 8.2 0.6 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) DUF972 PF06156.8 gi|435850684|ref|YP_007312270.1| - 6.6 7.1 9.7 1.9 8.8 0.6 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF972) Blo-t-5 PF11642.3 gi|435850684|ref|YP_007312270.1| - 9 6.0 12.8 14 5.4 1.9 3.8 2 1 1 4 4 3 0 Mite allergen Blo t 5 Arch_flagellin PF01917.11 gi|435850685|ref|YP_007312271.1| - 0.00014 21.4 6.4 0.00051 19.7 4.2 1.7 1 1 1 2 2 2 1 Archaebacterial flagellin CARDB PF07705.6 gi|435850685|ref|YP_007312271.1| - 0.015 15.3 0.3 0.034 14.1 0.1 1.7 1 1 1 2 2 2 0 CARDB BiPBP_C PF06832.7 gi|435850685|ref|YP_007312271.1| - 0.088 12.7 0.0 0.24 11.3 0.0 1.7 1 1 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family Arch_flagellin PF01917.11 gi|435850686|ref|YP_007312272.1| - 2.9e-12 46.5 1.9 8.3e-12 45.1 1.3 1.6 1 1 0 1 1 1 1 Archaebacterial flagellin Dexa_ind PF15198.1 gi|435850686|ref|YP_007312272.1| - 0.26 11.1 3.1 6.5 6.7 0.1 2.7 2 1 0 2 2 2 0 Dexamethasone-induced KaiC PF06745.8 gi|435850687|ref|YP_007312273.1| - 2e-16 59.8 0.1 2.5e-16 59.4 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|435850687|ref|YP_007312273.1| - 1.3e-06 27.9 0.2 5.8e-06 25.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|435850687|ref|YP_007312273.1| - 0.002 17.6 0.0 0.0039 16.6 0.0 1.6 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|435850687|ref|YP_007312273.1| - 0.0029 17.9 1.6 0.011 15.9 1.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|435850687|ref|YP_007312273.1| - 0.013 15.6 1.4 0.054 13.6 1.0 1.9 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|435850687|ref|YP_007312273.1| - 0.023 15.0 0.3 0.043 14.1 0.2 1.4 1 0 0 1 1 1 0 ABC transporter CbiA PF01656.18 gi|435850687|ref|YP_007312273.1| - 0.023 14.1 1.3 0.05 12.9 0.9 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.1 gi|435850687|ref|YP_007312273.1| - 0.028 14.3 0.1 0.047 13.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|435850687|ref|YP_007312273.1| - 0.029 14.0 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PRK PF00485.13 gi|435850687|ref|YP_007312273.1| - 0.034 13.7 0.1 0.059 12.9 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family PAXNEB PF05625.6 gi|435850687|ref|YP_007312273.1| - 0.065 12.0 3.5 0.36 9.6 0.4 2.0 2 0 0 2 2 2 0 PAXNEB protein AAA_17 PF13207.1 gi|435850687|ref|YP_007312273.1| - 0.11 13.3 0.6 0.18 12.6 0.4 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|435850687|ref|YP_007312273.1| - 0.18 11.4 1.2 0.66 9.6 0.8 1.9 1 1 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|435850687|ref|YP_007312273.1| - 0.2 11.0 0.7 0.63 9.4 0.1 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SE PF00437.15 gi|435850688|ref|YP_007312274.1| - 1.1e-44 152.4 0.0 1.5e-44 151.9 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|435850688|ref|YP_007312274.1| - 0.00021 20.7 0.0 0.00038 19.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Pox_VLTF3 PF04947.9 gi|435850688|ref|YP_007312274.1| - 0.12 11.9 0.2 0.27 10.7 0.1 1.5 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like AAA_23 PF13476.1 gi|435850688|ref|YP_007312274.1| - 0.59 10.4 0.1 0.59 10.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain T2SF PF00482.18 gi|435850689|ref|YP_007312275.1| - 8.8e-17 61.1 0.4 3.6e-12 46.2 0.3 3.7 4 1 0 4 4 4 2 Type II secretion system (T2SS), protein F BNIP3 PF06553.7 gi|435850689|ref|YP_007312275.1| - 5.2 6.3 4.6 0.84 8.9 0.1 1.8 2 0 0 2 2 2 0 BNIP3 Iso_dh PF00180.15 gi|435850690|ref|YP_007312276.1| - 1.8e-95 319.8 0.1 2.1e-95 319.6 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|435850692|ref|YP_007312278.1| - 6.3e-20 71.6 0.1 1.1e-19 70.8 0.1 1.5 1 1 0 1 1 1 1 Aconitase C-terminal domain STT3 PF02516.9 gi|435850693|ref|YP_007312279.1| - 3.7e-30 105.3 38.7 1.1e-28 100.4 26.8 2.3 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit CoA_binding_3 PF13727.1 gi|435850693|ref|YP_007312279.1| - 0.65 9.7 6.4 2.9 7.6 0.1 2.7 2 0 0 2 2 2 0 CoA-binding domain Glyco_trans_1_4 PF13692.1 gi|435850694|ref|YP_007312280.1| - 7e-17 61.8 0.0 2.4e-16 60.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|435850694|ref|YP_007312280.1| - 5e-14 52.0 0.1 7.9e-14 51.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|435850694|ref|YP_007312280.1| - 3.4e-10 39.9 0.5 5.9e-10 39.1 0.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|435850694|ref|YP_007312280.1| - 9.4e-08 31.9 4.2 1.7e-07 31.1 2.9 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|435850694|ref|YP_007312280.1| - 2.1e-06 27.9 0.0 4.5e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|435850694|ref|YP_007312280.1| - 5.2e-06 26.6 0.0 7.1e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|435850695|ref|YP_007312281.1| - 2.1e-27 95.6 0.0 3.4e-27 94.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|435850695|ref|YP_007312281.1| - 9.8e-18 64.6 0.0 1.5e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|435850695|ref|YP_007312281.1| - 4.4e-14 52.5 0.0 1.3e-13 50.9 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|435850695|ref|YP_007312281.1| - 1.6e-13 50.6 1.3 3.2e-13 49.6 0.9 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|435850695|ref|YP_007312281.1| - 1.4e-07 31.7 0.0 2.3e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|435850695|ref|YP_007312281.1| - 6.2e-07 29.3 0.1 9.7e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_90 PF05686.7 gi|435850695|ref|YP_007312281.1| - 0.084 11.5 0.1 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 90 Polysacc_synt PF01943.12 gi|435850696|ref|YP_007312282.1| - 9e-27 94.0 37.4 9e-27 94.0 25.9 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|435850696|ref|YP_007312282.1| - 5.4e-21 74.9 22.2 5.4e-21 74.9 15.4 4.6 1 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|435850696|ref|YP_007312282.1| - 1.7e-15 57.1 35.3 1.7e-15 57.1 24.5 2.6 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|435850696|ref|YP_007312282.1| - 3.1e-09 35.7 46.0 3.1e-09 35.7 31.1 1.6 1 1 0 1 1 1 1 MviN-like protein Glycos_transf_1 PF00534.15 gi|435850697|ref|YP_007312283.1| - 1.2e-15 57.3 0.1 4.2e-15 55.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|435850697|ref|YP_007312283.1| - 4.4e-14 52.7 0.0 7.9e-14 51.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|435850697|ref|YP_007312283.1| - 4.6e-11 42.8 0.0 1e-10 41.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|435850698|ref|YP_007312284.1| - 1.7e-05 24.6 1.5 7.1e-05 22.6 0.3 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|435850698|ref|YP_007312284.1| - 0.0032 16.9 0.1 0.028 13.8 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|435850698|ref|YP_007312284.1| - 0.016 15.3 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|435850698|ref|YP_007312284.1| - 0.038 14.2 0.0 0.076 13.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|435850698|ref|YP_007312284.1| - 0.048 13.3 0.0 0.12 12.0 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 NTP_transferase PF00483.18 gi|435850699|ref|YP_007312285.1| - 3.5e-31 108.4 0.0 4.2e-31 108.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|435850699|ref|YP_007312285.1| - 1.1e-09 38.5 0.0 2.5e-09 37.3 0.0 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.21 gi|435850699|ref|YP_007312285.1| - 1.4e-05 24.8 0.0 2.1e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 CTP_transf_3 PF02348.14 gi|435850699|ref|YP_007312285.1| - 0.0049 16.5 0.0 0.0072 15.9 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|435850699|ref|YP_007312285.1| - 0.0064 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MannoseP_isomer PF01050.13 gi|435850700|ref|YP_007312286.1| - 4e-57 192.0 0.2 6.7e-57 191.3 0.2 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.18 gi|435850700|ref|YP_007312286.1| - 1.2e-51 175.3 0.0 1.9e-51 174.7 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.6 gi|435850700|ref|YP_007312286.1| - 2.8e-11 42.7 0.0 5.5e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.2 gi|435850700|ref|YP_007312286.1| - 1.5e-05 25.1 0.0 2.8e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain AraC_binding PF02311.14 gi|435850700|ref|YP_007312286.1| - 0.0022 17.6 0.0 0.0049 16.5 0.0 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain IspD PF01128.14 gi|435850700|ref|YP_007312286.1| - 0.043 13.3 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NAD_binding_1 PF00175.16 gi|435850701|ref|YP_007312287.1| - 6.1e-17 62.1 0.0 1e-16 61.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|435850701|ref|YP_007312287.1| - 3.7e-13 48.7 2.4 9.3e-13 47.4 1.7 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_8 PF08022.7 gi|435850701|ref|YP_007312287.1| - 0.0048 16.7 0.0 0.0093 15.8 0.0 1.5 1 0 0 1 1 1 1 FAD-binding domain Fer2_3 PF13085.1 gi|435850701|ref|YP_007312287.1| - 0.034 13.9 0.1 0.061 13.1 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_20 PF14691.1 gi|435850702|ref|YP_007312288.1| - 1.4e-44 150.2 4.1 2.3e-44 149.5 2.9 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|435850702|ref|YP_007312288.1| - 2.7e-21 76.4 2.9 1.3e-10 41.5 1.6 4.1 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|435850702|ref|YP_007312288.1| - 7.3e-16 58.8 0.1 2.8e-05 24.2 0.0 3.1 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|435850702|ref|YP_007312288.1| - 2.4e-13 50.3 3.0 3.4e-06 27.3 0.1 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|435850702|ref|YP_007312288.1| - 4e-09 36.3 1.3 6.6e-09 35.6 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|435850702|ref|YP_007312288.1| - 4.9e-08 33.1 1.0 0.012 15.8 0.0 2.7 3 0 0 3 3 2 2 Putative NAD(P)-binding Thi4 PF01946.12 gi|435850702|ref|YP_007312288.1| - 3.1e-07 29.7 0.9 1.3e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|435850702|ref|YP_007312288.1| - 1.7e-06 27.6 10.5 0.0017 17.9 0.0 3.1 4 0 0 4 4 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.19 gi|435850702|ref|YP_007312288.1| - 3e-06 26.3 0.7 3e-06 26.3 0.5 2.4 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.19 gi|435850702|ref|YP_007312288.1| - 4.8e-06 25.7 5.2 1.9e-05 23.7 0.2 3.3 4 0 0 4 4 4 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|435850702|ref|YP_007312288.1| - 6.2e-06 25.5 4.0 6e-05 22.2 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|435850702|ref|YP_007312288.1| - 1.8e-05 23.8 2.3 0.0011 17.8 0.1 3.0 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|435850702|ref|YP_007312288.1| - 1.9e-05 23.3 0.2 1.9e-05 23.3 0.1 2.7 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|435850702|ref|YP_007312288.1| - 6.9e-05 22.0 0.8 0.00038 19.6 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain Shikimate_DH PF01488.15 gi|435850702|ref|YP_007312288.1| - 0.00048 20.2 2.5 0.24 11.4 0.0 3.8 5 0 0 5 5 3 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|435850702|ref|YP_007312288.1| - 0.00055 20.3 0.2 1.5 9.2 0.0 3.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Amino_oxidase PF01593.19 gi|435850702|ref|YP_007312288.1| - 0.00059 19.0 3.4 0.0013 17.8 0.1 2.4 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|435850702|ref|YP_007312288.1| - 0.0007 19.4 0.4 0.042 13.6 0.1 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding ELFV_dehydrog PF00208.16 gi|435850702|ref|YP_007312288.1| - 0.00076 19.1 0.1 0.17 11.4 0.0 2.3 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|435850702|ref|YP_007312288.1| - 0.0019 17.9 0.2 0.039 13.6 0.1 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|435850702|ref|YP_007312288.1| - 0.0022 17.4 0.0 0.04 13.3 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K_oxygenase PF13434.1 gi|435850702|ref|YP_007312288.1| - 0.0036 16.2 0.0 8.6 5.1 0.0 3.1 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Oxidored_nitro PF00148.14 gi|435850702|ref|YP_007312288.1| - 0.0061 15.2 0.0 0.11 11.0 0.0 2.1 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase 3HCDH_N PF02737.13 gi|435850702|ref|YP_007312288.1| - 0.0064 16.1 0.2 0.07 12.7 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DJ-1_PfpI PF01965.19 gi|435850702|ref|YP_007312288.1| - 0.0084 15.5 0.3 0.18 11.2 0.1 2.7 1 1 0 2 2 2 1 DJ-1/PfpI family 2-Hacid_dh_C PF02826.14 gi|435850702|ref|YP_007312288.1| - 0.01 15.0 0.1 2.6 7.1 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Fer4_7 PF12838.2 gi|435850702|ref|YP_007312288.1| - 0.02 15.2 0.7 0.02 15.2 0.5 2.8 3 1 1 4 4 2 0 4Fe-4S dicluster domain YjeF_N PF03853.10 gi|435850702|ref|YP_007312288.1| - 0.029 13.9 0.0 6.4 6.3 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus Trp_halogenase PF04820.9 gi|435850702|ref|YP_007312288.1| - 0.047 12.3 1.5 0.063 11.8 0.0 1.8 2 0 0 2 2 2 0 Tryptophan halogenase ApbA PF02558.11 gi|435850702|ref|YP_007312288.1| - 0.067 12.6 0.1 0.2 11.0 0.0 1.8 2 0 0 2 2 1 0 Ketopantoate reductase PanE/ApbA FMO-like PF00743.14 gi|435850702|ref|YP_007312288.1| - 0.074 11.2 0.0 1.6 6.8 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like Fer4_8 PF13183.1 gi|435850702|ref|YP_007312288.1| - 0.12 12.4 0.1 0.12 12.4 0.1 2.3 2 1 0 2 2 1 0 4Fe-4S dicluster domain NAD_binding_10 PF13460.1 gi|435850702|ref|YP_007312288.1| - 0.16 11.9 2.0 3.9 7.4 0.0 3.4 4 0 0 4 4 4 0 NADH(P)-binding Lycopene_cycl PF05834.7 gi|435850702|ref|YP_007312288.1| - 0.22 10.4 0.2 0.56 9.0 0.1 1.7 1 0 0 1 1 1 0 Lycopene cyclase protein AdoHcyase_NAD PF00670.16 gi|435850702|ref|YP_007312288.1| - 0.26 11.1 2.9 4.7 7.0 0.0 3.1 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Fer4_18 PF13746.1 gi|435850702|ref|YP_007312288.1| - 1.3 9.4 6.3 0.37 11.2 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain PAPS_reduct PF01507.14 gi|435850703|ref|YP_007312289.1| - 3.5e-41 140.9 0.0 6.3e-41 140.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|435850703|ref|YP_007312289.1| - 0.00018 21.8 10.9 0.00018 21.8 7.5 2.7 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435850703|ref|YP_007312289.1| - 0.00021 21.4 11.0 0.00021 21.4 7.6 2.2 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435850703|ref|YP_007312289.1| - 0.00034 20.0 6.6 0.00034 20.0 4.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435850703|ref|YP_007312289.1| - 0.001 18.8 14.7 0.001 18.8 10.2 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435850703|ref|YP_007312289.1| - 0.0047 16.9 12.8 0.0047 16.9 8.9 2.9 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435850703|ref|YP_007312289.1| - 0.0081 16.8 0.9 0.0081 16.8 0.6 3.9 3 1 0 4 4 4 1 4Fe-4S double cluster binding domain NAD_synthase PF02540.12 gi|435850703|ref|YP_007312289.1| - 0.022 13.6 0.0 0.037 12.9 0.0 1.3 1 0 0 1 1 1 0 NAD synthase PUA PF01472.15 gi|435850703|ref|YP_007312289.1| - 0.024 14.3 0.0 0.066 12.9 0.0 1.7 1 0 0 1 1 1 0 PUA domain ATP_bind_3 PF01171.15 gi|435850703|ref|YP_007312289.1| - 0.11 12.0 0.0 0.26 10.7 0.0 1.7 2 0 0 2 2 2 0 PP-loop family Fer4_6 PF12837.2 gi|435850703|ref|YP_007312289.1| - 0.92 9.4 23.1 0.16 11.9 3.7 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435850703|ref|YP_007312289.1| - 7.1 7.1 19.4 8.1 6.9 4.8 2.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain UPF0118 PF01594.11 gi|435850704|ref|YP_007312290.1| - 4.2e-40 137.7 47.6 5e-40 137.4 33.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF2611 PF11022.3 gi|435850704|ref|YP_007312290.1| - 3.4 7.8 4.5 1.2 9.3 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2611) tRNA-Thr_ED PF08915.6 gi|435850705|ref|YP_007312291.1| - 1.3e-54 183.9 0.3 2.2e-54 183.1 0.2 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|435850705|ref|YP_007312291.1| - 8.6e-23 80.7 2.0 1.4e-22 80.0 1.4 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|435850705|ref|YP_007312291.1| - 6.1e-19 67.7 0.6 1.3e-18 66.6 0.4 1.6 1 0 0 1 1 1 1 Anticodon binding domain Acylphosphatase PF00708.13 gi|435850706|ref|YP_007312292.1| - 2.5e-26 91.6 0.0 2.9e-26 91.4 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase ThiI PF02568.9 gi|435850707|ref|YP_007312293.1| - 9.8e-54 181.8 0.0 1.4e-53 181.2 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|435850707|ref|YP_007312293.1| - 5.2e-18 65.3 0.0 3.7e-17 62.5 0.0 2.1 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|435850707|ref|YP_007312293.1| - 0.0003 20.1 0.0 0.43 9.8 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|435850707|ref|YP_007312293.1| - 0.00073 18.1 0.0 0.0012 17.5 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase PA PF02225.17 gi|435850707|ref|YP_007312293.1| - 0.11 12.1 0.1 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 PA domain Arch_fla_DE PF04659.8 gi|435850708|ref|YP_007312294.1| - 3.9e-28 97.2 0.5 8.4e-28 96.1 0.3 1.6 1 0 0 1 1 1 1 Archaeal flagella protein EzrA PF06160.7 gi|435850708|ref|YP_007312294.1| - 1.6e-05 23.3 2.1 3.1e-05 22.3 1.5 1.4 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA FlaC_arch PF05377.6 gi|435850708|ref|YP_007312294.1| - 2.5e-05 24.0 2.3 0.92 9.4 0.2 4.0 3 0 0 3 3 3 1 Flagella accessory protein C (FlaC) Reo_sigmaC PF04582.7 gi|435850708|ref|YP_007312294.1| - 0.0046 16.1 8.8 0.074 12.2 3.6 2.8 1 1 2 3 3 3 2 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|435850708|ref|YP_007312294.1| - 0.0066 14.9 0.2 0.0093 14.4 0.1 1.1 1 0 0 1 1 1 1 AAA domain Baculo_PEP_C PF04513.7 gi|435850708|ref|YP_007312294.1| - 0.013 15.2 1.3 2.5 7.9 0.0 2.9 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus MCPsignal PF00015.16 gi|435850708|ref|YP_007312294.1| - 0.014 14.9 4.8 0.2 11.2 2.7 2.3 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF972 PF06156.8 gi|435850708|ref|YP_007312294.1| - 0.018 15.3 4.9 3.6 7.9 0.3 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF972) CENP-F_leu_zip PF10473.4 gi|435850708|ref|YP_007312294.1| - 0.029 14.2 3.7 0.069 12.9 0.6 2.3 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 IncA PF04156.9 gi|435850708|ref|YP_007312294.1| - 0.042 13.4 1.5 0.17 11.4 1.1 1.9 1 1 0 1 1 1 0 IncA protein FH2 PF02181.18 gi|435850708|ref|YP_007312294.1| - 0.056 12.3 1.8 0.6 8.9 0.1 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain RNA_pol_Rpc82 PF05645.8 gi|435850708|ref|YP_007312294.1| - 0.057 12.9 0.3 6 6.3 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 Spc7 PF08317.6 gi|435850708|ref|YP_007312294.1| - 0.081 11.5 2.1 0.45 9.1 1.4 1.9 1 1 0 2 2 2 0 Spc7 kinetochore protein Myosin_tail_1 PF01576.14 gi|435850708|ref|YP_007312294.1| - 0.084 10.5 1.1 0.13 9.9 0.8 1.2 1 0 0 1 1 1 0 Myosin tail Syntaxin_2 PF14523.1 gi|435850708|ref|YP_007312294.1| - 0.12 12.4 3.0 8.6 6.4 0.5 3.3 2 1 1 3 3 3 0 Syntaxin-like protein Filament PF00038.16 gi|435850708|ref|YP_007312294.1| - 0.14 11.6 3.4 3 7.2 0.0 2.4 1 1 2 3 3 3 0 Intermediate filament protein Laminin_II PF06009.7 gi|435850708|ref|YP_007312294.1| - 0.18 11.5 8.4 4.4 7.0 0.3 3.6 2 1 2 4 4 4 0 Laminin Domain II Nsp1_C PF05064.8 gi|435850708|ref|YP_007312294.1| - 0.2 11.2 2.1 0.35 10.5 0.2 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region TBPIP PF07106.8 gi|435850708|ref|YP_007312294.1| - 0.23 11.0 1.9 6.7 6.2 0.2 2.6 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Sec34 PF04136.10 gi|435850708|ref|YP_007312294.1| - 0.29 10.8 1.2 0.51 10.0 0.3 1.8 2 0 0 2 2 1 0 Sec34-like family TMCO5 PF14992.1 gi|435850708|ref|YP_007312294.1| - 0.33 10.0 3.4 0.18 10.9 0.9 1.5 2 0 0 2 2 2 0 TMCO5 family DUF1664 PF07889.7 gi|435850708|ref|YP_007312294.1| - 0.52 10.1 3.5 17 5.2 0.1 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TMF_TATA_bd PF12325.3 gi|435850708|ref|YP_007312294.1| - 0.58 9.8 5.0 6.2 6.5 0.1 2.5 1 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding COG2 PF06148.6 gi|435850708|ref|YP_007312294.1| - 4.6 7.1 7.2 4.2 7.2 0.8 2.9 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 GPDPase_memb PF10110.4 gi|435850709|ref|YP_007312295.1| - 0.00027 20.3 17.1 0.00037 19.9 5.2 3.2 2 1 1 3 3 3 2 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF4013 PF13197.1 gi|435850709|ref|YP_007312295.1| - 0.00038 19.8 30.2 0.012 14.9 7.7 2.8 1 1 2 3 3 3 2 Protein of unknown function (DUF4013) DUF975 PF06161.6 gi|435850709|ref|YP_007312295.1| - 0.0013 18.5 18.8 0.0028 17.4 13.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF975) UPF0259 PF06790.6 gi|435850709|ref|YP_007312295.1| - 0.0024 17.3 23.4 0.019 14.4 13.2 2.1 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0259) PufQ PF05398.6 gi|435850709|ref|YP_007312295.1| - 0.49 10.4 0.1 0.49 10.4 0.1 2.7 3 0 0 3 3 3 0 PufQ cytochrome subunit Tetraspannin PF00335.15 gi|435850709|ref|YP_007312295.1| - 1.3 8.2 16.2 0.5 9.5 5.0 2.2 1 1 1 2 2 2 0 Tetraspanin family GPDPase_memb PF10110.4 gi|435850710|ref|YP_007312296.1| - 2.4e-05 23.7 3.8 0.0025 17.2 2.7 3.0 1 1 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase EMP70 PF02990.11 gi|435850710|ref|YP_007312296.1| - 3.3 6.0 6.8 33 2.7 1.7 2.2 1 1 1 2 2 2 0 Endomembrane protein 70 DUF2937 PF11157.3 gi|435850710|ref|YP_007312296.1| - 6.9 5.9 6.9 0.45 9.8 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) DUF3087 PF11286.3 gi|435850712|ref|YP_007312298.1| - 0.048 12.8 2.3 0.057 12.6 1.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3087) Ferric_reduct PF01794.14 gi|435850712|ref|YP_007312298.1| - 1.5 8.9 7.0 4.3 7.4 4.8 1.8 1 1 0 1 1 1 0 Ferric reductase like transmembrane component Ion_trans_2 PF07885.11 gi|435850712|ref|YP_007312298.1| - 2 8.1 9.0 2.7 7.7 6.2 1.2 1 0 0 1 1 1 0 Ion channel DUF3112 PF11309.3 gi|435850712|ref|YP_007312298.1| - 5.9 6.6 9.3 13 5.5 6.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3112) DUF1628 PF07790.6 gi|435850713|ref|YP_007312299.1| - 4.8e-25 88.1 3.0 4.8e-25 88.1 2.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF3280 PF11684.3 gi|435850713|ref|YP_007312299.1| - 0.011 15.9 0.5 0.021 15.0 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2380) RHH_1 PF01402.16 gi|435850714|ref|YP_007312300.1| - 0.035 14.0 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family ACT_6 PF13740.1 gi|435850715|ref|YP_007312301.1| - 3.9e-16 58.5 1.0 4.4e-16 58.3 0.7 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|435850715|ref|YP_007312301.1| - 1.1e-08 34.3 0.9 1.5e-08 33.9 0.6 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|435850715|ref|YP_007312301.1| - 2.4e-05 24.5 1.7 3.8e-05 23.9 1.2 1.3 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|435850715|ref|YP_007312301.1| - 0.0011 18.3 0.5 0.0018 17.7 0.3 1.4 1 1 0 1 1 1 1 ACT domain UDPG_MGDP_dh_N PF03721.9 gi|435850715|ref|YP_007312301.1| - 0.048 13.0 0.1 0.049 13.0 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF711 PF05167.7 gi|435850716|ref|YP_007312302.1| - 5.7e-181 601.5 7.9 7e-181 601.2 5.5 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) DUF2493 PF10686.4 gi|435850716|ref|YP_007312302.1| - 0.075 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) SKI PF01202.17 gi|435850717|ref|YP_007312303.1| - 2.1e-30 105.7 0.0 2.3e-30 105.5 0.0 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_17 PF13207.1 gi|435850717|ref|YP_007312303.1| - 4.6e-09 37.1 0.0 7.3e-09 36.4 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|435850717|ref|YP_007312303.1| - 2.4e-06 27.9 0.1 3.4e-06 27.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|435850717|ref|YP_007312303.1| - 0.00021 21.1 0.0 0.00037 20.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|435850717|ref|YP_007312303.1| - 0.00074 19.4 0.1 0.0024 17.8 0.1 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA PF00004.24 gi|435850717|ref|YP_007312303.1| - 0.0017 18.5 0.0 0.0028 17.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|435850717|ref|YP_007312303.1| - 0.012 15.3 0.0 0.11 12.2 0.0 2.0 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|435850717|ref|YP_007312303.1| - 0.076 13.0 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|435850717|ref|YP_007312303.1| - 0.11 11.6 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CbiM PF01891.11 gi|435850718|ref|YP_007312304.1| - 3.8e-55 186.6 23.7 4.3e-55 186.4 16.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3815 PF12821.2 gi|435850718|ref|YP_007312304.1| - 0.0013 18.6 11.3 0.0013 18.6 7.8 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF3815) PDGLE PF13190.1 gi|435850719|ref|YP_007312305.1| - 4.3e-19 67.9 2.8 5e-19 67.7 2.0 1.1 1 0 0 1 1 1 1 PDGLE domain OppC_N PF12911.2 gi|435850719|ref|YP_007312305.1| - 0.0043 16.3 1.7 0.057 12.7 0.1 2.2 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C Yip1 PF04893.12 gi|435850719|ref|YP_007312305.1| - 0.047 13.1 0.2 0.058 12.8 0.1 1.1 1 0 0 1 1 1 0 Yip1 domain Sulfate_transp PF00916.15 gi|435850720|ref|YP_007312306.1| - 0.087 11.8 1.2 0.085 11.8 0.8 1.0 1 0 0 1 1 1 0 Sulfate transporter family DUF2208 PF09973.4 gi|435850720|ref|YP_007312306.1| - 0.31 10.2 2.1 0.32 10.1 1.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) DUF4063 PF13272.1 gi|435850720|ref|YP_007312306.1| - 0.34 10.7 2.0 11 5.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4063) DUF3311 PF11755.3 gi|435850720|ref|YP_007312306.1| - 1.2 8.7 7.7 1.1 8.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3311) YqhR PF11085.3 gi|435850720|ref|YP_007312306.1| - 1.2 8.6 5.5 2.5 7.5 3.8 1.5 1 1 0 1 1 1 0 Conserved membrane protein YqhR Apq12 PF12716.2 gi|435850720|ref|YP_007312306.1| - 6.9 6.4 8.5 15 5.3 0.8 2.5 2 1 0 2 2 2 0 Nuclear pore assembly and biogenesis UPF0104 PF03706.8 gi|435850721|ref|YP_007312307.1| - 5.4e-21 75.1 32.0 6.8e-21 74.8 22.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Polysacc_deac_1 PF01522.16 gi|435850722|ref|YP_007312308.1| - 9.1e-17 60.8 0.0 1.3e-16 60.3 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glycos_transf_1 PF00534.15 gi|435850723|ref|YP_007312309.1| - 4.8e-39 133.5 0.6 6.9e-39 133.0 0.4 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|435850723|ref|YP_007312309.1| - 3.4e-14 53.1 0.0 6.1e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|435850723|ref|YP_007312309.1| - 1.7e-10 41.0 0.0 3.5e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|435850723|ref|YP_007312309.1| - 8.8e-08 32.0 0.0 2.2e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|435850723|ref|YP_007312309.1| - 1.4e-06 28.2 0.7 1.2e-05 25.1 0.2 2.5 2 1 1 3 3 3 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|435850723|ref|YP_007312309.1| - 7.6e-06 26.1 0.0 1e-05 25.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain PIGA PF08288.7 gi|435850723|ref|YP_007312309.1| - 0.00083 19.6 0.0 0.0022 18.2 0.0 1.7 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Sigma54_DBD PF04552.8 gi|435850723|ref|YP_007312309.1| - 0.26 10.8 1.3 0.32 10.4 0.1 1.8 2 0 0 2 2 2 0 Sigma-54, DNA binding domain UPF0104 PF03706.8 gi|435850724|ref|YP_007312310.1| - 2.1e-33 115.8 23.5 2.8e-33 115.4 16.2 1.2 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0104) E1-E2_ATPase PF00122.15 gi|435850725|ref|YP_007312311.1| - 9.4e-60 201.5 0.7 9.4e-60 201.5 0.5 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|435850725|ref|YP_007312311.1| - 1.1e-22 81.5 0.0 2e-22 80.6 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|435850725|ref|YP_007312311.1| - 2.6e-17 62.0 0.2 6.2e-17 60.8 0.1 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Cation_ATPase_C PF00689.16 gi|435850725|ref|YP_007312311.1| - 7.8e-17 61.3 12.5 7.8e-17 61.3 8.6 2.1 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus HAD PF12710.2 gi|435850725|ref|YP_007312311.1| - 3.1e-12 47.0 0.0 6.7e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|435850725|ref|YP_007312311.1| - 3.9e-05 23.5 0.0 0.0001 22.1 0.0 1.7 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|435850725|ref|YP_007312311.1| - 0.00048 19.7 2.5 0.0012 18.4 0.6 2.1 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase PrgI PF12666.2 gi|435850725|ref|YP_007312311.1| - 0.041 14.0 0.6 0.041 14.0 0.4 3.1 2 0 0 2 2 2 0 PrgI family protein CorA PF01544.13 gi|435850726|ref|YP_007312312.1| - 9.4e-61 205.3 9.3 1.1e-60 205.1 6.4 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein RPW8 PF05659.6 gi|435850726|ref|YP_007312312.1| - 0.61 9.6 5.8 0.34 10.4 2.2 2.0 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF2232 PF09991.4 gi|435850727|ref|YP_007312313.1| - 0.00015 20.8 1.3 0.00015 20.8 0.9 3.6 1 1 2 3 3 3 1 Predicted membrane protein (DUF2232) TMEM154 PF15102.1 gi|435850727|ref|YP_007312313.1| - 0.21 11.2 1.6 0.66 9.6 0.9 2.1 2 0 0 2 2 2 0 TMEM154 protein family TMEM192 PF14802.1 gi|435850727|ref|YP_007312313.1| - 0.22 10.3 6.1 0.094 11.5 0.5 2.5 1 1 1 2 2 2 0 TMEM192 family NfeD PF01957.13 gi|435850727|ref|YP_007312313.1| - 0.61 10.2 10.0 0.57 10.3 0.2 3.4 1 1 2 3 3 3 0 NfeD-like C-terminal, partner-binding DUF373 PF04123.8 gi|435850727|ref|YP_007312313.1| - 1.4 7.8 12.2 0.59 9.0 6.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF373) DUF3671 PF12420.3 gi|435850727|ref|YP_007312313.1| - 9.4 6.2 19.1 2.5 8.1 0.9 3.3 1 1 1 2 2 2 0 Protein of unknown function CcoS PF03597.10 gi|435850728|ref|YP_007312314.1| - 4.6e-08 32.3 1.2 6e-08 32.0 0.8 1.2 1 0 0 1 1 1 1 Cytochrome oxidase maturation protein cbb3-type Tetraspannin PF00335.15 gi|435850728|ref|YP_007312314.1| - 0.13 11.5 0.1 0.13 11.5 0.0 1.0 1 0 0 1 1 1 0 Tetraspanin family COX1 PF00115.15 gi|435850729|ref|YP_007312315.1| - 5e-82 275.8 60.0 1.9e-81 273.9 39.1 2.2 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I FixO PF02433.10 gi|435850729|ref|YP_007312315.1| - 1.2e-30 106.6 0.2 4.4e-30 104.7 0.2 1.9 1 1 0 1 1 1 1 Cytochrome C oxidase, mono-heme subunit/FixO Cytochrome_CBB3 PF13442.1 gi|435850729|ref|YP_007312315.1| - 1.4e-25 89.2 0.1 1.5e-08 34.6 0.0 3.8 3 1 0 3 3 3 3 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.16 gi|435850729|ref|YP_007312315.1| - 1.8e-18 67.1 0.0 6e-05 23.7 0.0 3.8 3 0 0 3 3 3 3 Cytochrome c Cytochrome_C7 PF14522.1 gi|435850729|ref|YP_007312315.1| - 0.0051 16.4 2.4 13 5.5 0.0 3.3 3 0 0 3 3 3 1 Cytochrome c7 Cytochrom_C550 PF14495.1 gi|435850729|ref|YP_007312315.1| - 0.19 11.1 5.4 1.1 8.7 0.0 2.7 3 0 0 3 3 3 0 Cytochrome c-550 domain Haem_bd PF14376.1 gi|435850729|ref|YP_007312315.1| - 0.2 11.3 0.3 67 3.1 0.0 3.7 4 0 0 4 4 4 0 Haem-binding domain UPF0182 PF03699.8 gi|435850729|ref|YP_007312315.1| - 8.3 4.2 15.0 0.0086 14.0 1.5 2.2 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0182) Cytochrom_C1 PF02167.10 gi|435850729|ref|YP_007312315.1| - 8.5 5.9 9.7 12 5.4 0.1 3.4 3 0 0 3 3 3 0 Cytochrome C1 family Cupredoxin_1 PF13473.1 gi|435850731|ref|YP_007312317.1| - 1.9e-12 46.9 0.1 2.3e-12 46.7 0.1 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|435850731|ref|YP_007312317.1| - 3.7e-11 43.1 1.1 6e-09 36.0 0.8 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family N_NLPC_P60 PF12912.2 gi|435850731|ref|YP_007312317.1| - 0.13 12.3 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 NLPC_P60 stabilising domain, N term PKD PF00801.15 gi|435850731|ref|YP_007312317.1| - 0.4 10.4 3.7 6.8 6.5 2.5 2.2 1 1 0 1 1 1 0 PKD domain DUF2156 PF09924.4 gi|435850732|ref|YP_007312318.1| - 1.8e-92 309.3 0.0 2.3e-92 309.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2156) UPF0104 PF03706.8 gi|435850732|ref|YP_007312318.1| - 1.8e-13 50.4 25.4 1.8e-13 50.4 17.6 3.2 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0104) CbiQ PF02361.11 gi|435850733|ref|YP_007312319.1| - 3.1e-33 115.2 8.9 5.1e-33 114.5 6.2 1.3 1 0 0 1 1 1 1 Cobalt transport protein Herpes_pp85 PF04637.7 gi|435850733|ref|YP_007312319.1| - 0.092 11.0 0.0 0.13 10.5 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) ABC_tran PF00005.22 gi|435850734|ref|YP_007312320.1| - 7.7e-33 113.6 0.0 1.1e-32 113.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435850734|ref|YP_007312320.1| - 1.1e-16 61.6 0.4 2.1e-11 44.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|435850734|ref|YP_007312320.1| - 4.1e-10 39.2 0.0 6e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|435850734|ref|YP_007312320.1| - 1.5e-07 30.8 0.1 0.00014 21.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|435850734|ref|YP_007312320.1| - 0.0016 17.8 0.0 0.003 17.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|435850734|ref|YP_007312320.1| - 0.0069 16.2 0.0 0.054 13.4 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|435850734|ref|YP_007312320.1| - 0.0086 16.4 0.3 0.016 15.5 0.2 1.4 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|435850734|ref|YP_007312320.1| - 0.017 14.3 0.1 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|435850734|ref|YP_007312320.1| - 0.024 13.1 0.2 3.8 5.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|435850734|ref|YP_007312320.1| - 0.029 14.3 0.1 0.057 13.3 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.1 gi|435850734|ref|YP_007312320.1| - 0.037 14.0 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|435850734|ref|YP_007312320.1| - 0.058 12.5 0.0 0.096 11.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI G-alpha PF00503.15 gi|435850734|ref|YP_007312320.1| - 0.081 11.5 0.0 0.081 11.5 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_10 PF12846.2 gi|435850734|ref|YP_007312320.1| - 0.13 11.6 0.1 4 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain ABC_tran PF00005.22 gi|435850735|ref|YP_007312321.1| - 3.4e-22 79.2 0.0 5.5e-22 78.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435850735|ref|YP_007312321.1| - 2.9e-11 43.8 4.3 2.8e-05 24.2 0.3 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|435850735|ref|YP_007312321.1| - 1e-07 31.6 0.0 0.0032 16.9 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|435850735|ref|YP_007312321.1| - 5.5e-05 22.5 0.4 0.0013 18.0 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|435850735|ref|YP_007312321.1| - 5.7e-05 22.5 0.1 0.00013 21.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|435850735|ref|YP_007312321.1| - 0.00011 22.2 0.8 0.0017 18.3 0.5 2.2 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|435850735|ref|YP_007312321.1| - 0.0021 17.9 0.1 0.003 17.5 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|435850735|ref|YP_007312321.1| - 0.0023 18.0 0.3 0.014 15.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|435850735|ref|YP_007312321.1| - 0.0026 18.1 0.1 0.0042 17.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|435850735|ref|YP_007312321.1| - 0.0028 16.6 0.1 0.0086 15.0 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_15 PF13175.1 gi|435850735|ref|YP_007312321.1| - 0.0046 16.0 0.2 0.072 12.1 0.1 2.1 1 1 0 2 2 2 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|435850735|ref|YP_007312321.1| - 0.0053 16.2 0.1 0.016 14.7 0.0 1.7 2 1 0 2 2 2 1 FtsK/SpoIIIE family Miro PF08477.8 gi|435850735|ref|YP_007312321.1| - 0.011 16.2 0.0 0.023 15.1 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_17 PF13207.1 gi|435850735|ref|YP_007312321.1| - 0.011 16.5 0.1 0.016 15.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|435850735|ref|YP_007312321.1| - 0.015 14.4 0.1 0.027 13.6 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|435850735|ref|YP_007312321.1| - 0.028 14.1 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|435850735|ref|YP_007312321.1| - 0.044 13.6 0.0 0.23 11.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|435850735|ref|YP_007312321.1| - 0.046 13.1 0.0 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|435850735|ref|YP_007312321.1| - 0.072 12.7 0.1 0.25 11.0 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase AAA_33 PF13671.1 gi|435850735|ref|YP_007312321.1| - 0.089 12.6 0.0 0.34 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|435850735|ref|YP_007312321.1| - 0.096 12.2 0.1 0.2 11.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|435850735|ref|YP_007312321.1| - 0.1 11.4 0.0 0.15 10.8 0.0 1.4 1 1 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|435850735|ref|YP_007312321.1| - 0.1 12.7 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.12 gi|435850735|ref|YP_007312321.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA PF00004.24 gi|435850735|ref|YP_007312321.1| - 0.12 12.5 0.0 0.42 10.8 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|435850735|ref|YP_007312321.1| - 0.13 11.9 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|435850735|ref|YP_007312321.1| - 0.19 10.1 0.1 4.8 5.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain PMSR PF01625.16 gi|435850736|ref|YP_007312322.1| - 8.9e-33 113.3 0.1 1.1e-32 113.0 0.1 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF1283 PF06932.6 gi|435850736|ref|YP_007312322.1| - 0.067 13.2 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1283) NnrU PF07298.6 gi|435850737|ref|YP_007312323.1| - 2.6e-05 23.6 8.9 3.6e-05 23.2 6.2 1.2 1 0 0 1 1 1 1 NnrU protein PEMT PF04191.8 gi|435850737|ref|YP_007312323.1| - 0.0022 18.1 0.4 0.0022 18.1 0.3 1.9 2 0 0 2 2 2 1 Phospholipid methyltransferase DUF3754 PF12576.3 gi|435850737|ref|YP_007312323.1| - 1.6 8.3 3.6 2.1 7.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3754) TPR_12 PF13424.1 gi|435850738|ref|YP_007312324.1| - 1.8e-09 37.3 4.7 0.00077 19.3 0.1 3.8 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435850738|ref|YP_007312324.1| - 2.9e-05 24.3 0.7 30 5.6 0.0 5.1 3 1 2 5 5 5 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|435850738|ref|YP_007312324.1| - 7.3e-05 22.1 0.5 0.19 11.4 0.0 3.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435850738|ref|YP_007312324.1| - 0.00011 22.0 1.5 1.9 8.9 0.0 4.4 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|435850738|ref|YP_007312324.1| - 0.0006 19.3 9.6 0.14 11.8 0.1 4.4 4 1 1 5 5 5 2 TPR repeat TPR_10 PF13374.1 gi|435850738|ref|YP_007312324.1| - 0.0033 17.3 0.2 0.42 10.6 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|435850738|ref|YP_007312324.1| - 0.0098 16.0 8.5 0.2 11.7 0.2 3.5 3 1 1 4 4 3 2 Anaphase-promoting complex, cyclosome, subunit 3 Cas_Cas02710 PF09670.5 gi|435850738|ref|YP_007312324.1| - 0.019 13.5 3.4 0.071 11.7 0.2 2.1 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Cas02710) TPR_8 PF13181.1 gi|435850738|ref|YP_007312324.1| - 0.02 14.6 12.0 0.19 11.6 0.1 4.4 5 0 0 5 5 4 0 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|435850738|ref|YP_007312324.1| - 0.024 14.2 0.7 0.061 12.9 0.0 2.0 2 1 0 2 2 2 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_21 PF09976.4 gi|435850738|ref|YP_007312324.1| - 0.049 13.5 0.1 0.49 10.3 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|435850738|ref|YP_007312324.1| - 0.082 12.8 9.1 1.8 8.6 0.1 4.7 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435850738|ref|YP_007312324.1| - 0.3 10.9 6.7 11 6.0 0.1 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435850738|ref|YP_007312324.1| - 0.6 10.4 8.3 3.5 8.0 0.2 4.5 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|435850738|ref|YP_007312324.1| - 1.3 9.6 5.1 71 4.1 0.1 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat LrgA PF03788.9 gi|435850739|ref|YP_007312325.1| - 3.8e-28 97.0 9.1 4.7e-28 96.7 6.3 1.1 1 0 0 1 1 1 1 LrgA family YIEGIA PF14045.1 gi|435850739|ref|YP_007312325.1| - 0.014 14.0 1.1 0.018 13.6 0.4 1.5 1 1 0 1 1 1 0 YIEGIA protein LrgB PF04172.11 gi|435850740|ref|YP_007312326.1| - 4.6e-80 267.8 14.4 5.2e-80 267.6 10.0 1.0 1 0 0 1 1 1 1 LrgB-like family DNA_alkylation PF08713.6 gi|435850741|ref|YP_007312327.1| - 2e-59 200.6 2.2 2.2e-59 200.5 1.5 1.0 1 0 0 1 1 1 1 DNA alkylation repair enzyme Cnd3 PF12719.2 gi|435850741|ref|YP_007312327.1| - 0.027 13.4 0.0 0.038 12.9 0.0 1.1 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain AAA PF00004.24 gi|435850742|ref|YP_007312328.1| - 4.3e-100 331.1 0.0 1.2e-49 167.8 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|435850742|ref|YP_007312328.1| - 5.5e-26 90.3 0.3 7.1e-25 86.7 0.1 2.8 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|435850742|ref|YP_007312328.1| - 1e-14 54.1 0.0 2.5e-07 29.9 0.0 2.8 2 1 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|435850742|ref|YP_007312328.1| - 1.1e-14 54.7 0.0 2.4e-06 27.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|435850742|ref|YP_007312328.1| - 3.9e-13 49.6 1.0 0.00059 19.9 0.1 4.4 3 2 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|435850742|ref|YP_007312328.1| - 5.3e-13 49.3 0.0 2.8e-05 24.1 0.0 3.3 2 2 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|435850742|ref|YP_007312328.1| - 6.5e-13 48.1 0.1 1.7e-12 46.7 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.9 gi|435850742|ref|YP_007312328.1| - 4.3e-12 45.9 1.6 0.00034 20.3 0.1 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|435850742|ref|YP_007312328.1| - 8.1e-12 46.0 0.0 0.00017 22.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|435850742|ref|YP_007312328.1| - 1.2e-11 44.0 0.3 4.7e-05 22.2 0.0 2.6 3 0 0 3 3 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|435850742|ref|YP_007312328.1| - 1.9e-11 43.4 0.3 0.00011 21.3 0.0 2.8 3 0 0 3 3 3 2 Zeta toxin AAA_14 PF13173.1 gi|435850742|ref|YP_007312328.1| - 6e-11 42.3 0.0 0.00039 20.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|435850742|ref|YP_007312328.1| - 7.5e-10 38.8 0.0 0.0013 18.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|435850742|ref|YP_007312328.1| - 1.9e-09 37.1 0.1 0.0024 17.3 0.0 3.9 2 2 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|435850742|ref|YP_007312328.1| - 8.5e-08 31.5 0.6 0.0044 16.2 0.0 2.9 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|435850742|ref|YP_007312328.1| - 1.4e-07 31.2 0.2 0.012 15.1 0.0 2.9 3 1 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|435850742|ref|YP_007312328.1| - 1.7e-07 30.8 0.9 0.0083 15.8 0.0 3.0 3 0 0 3 3 2 2 Part of AAA domain AAA_18 PF13238.1 gi|435850742|ref|YP_007312328.1| - 2.3e-07 31.1 0.0 0.037 14.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|435850742|ref|YP_007312328.1| - 2.4e-07 30.3 0.0 0.0044 16.4 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.1 gi|435850742|ref|YP_007312328.1| - 3.8e-07 30.2 0.0 0.03 14.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|435850742|ref|YP_007312328.1| - 8.2e-07 28.8 0.1 0.22 11.1 0.0 4.0 3 1 0 3 3 3 2 NACHT domain AAA_25 PF13481.1 gi|435850742|ref|YP_007312328.1| - 8.9e-07 28.4 4.4 0.025 13.9 0.1 3.7 2 2 1 3 3 3 2 AAA domain DUF815 PF05673.8 gi|435850742|ref|YP_007312328.1| - 1.8e-06 27.0 0.0 0.016 14.1 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|435850742|ref|YP_007312328.1| - 2.6e-06 27.3 0.0 0.14 11.8 0.0 3.1 2 1 1 3 3 3 2 Archaeal ATPase RNA_helicase PF00910.17 gi|435850742|ref|YP_007312328.1| - 4e-06 26.9 0.0 0.049 13.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Sigma54_activ_2 PF14532.1 gi|435850742|ref|YP_007312328.1| - 5.7e-06 26.4 0.0 0.1 12.6 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|435850742|ref|YP_007312328.1| - 9.9e-06 25.2 0.1 0.15 11.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|435850742|ref|YP_007312328.1| - 2.4e-05 24.6 0.0 0.29 11.4 0.0 3.0 3 0 0 3 3 2 2 ABC transporter Cytidylate_kin2 PF13189.1 gi|435850742|ref|YP_007312328.1| - 3.9e-05 23.6 0.0 0.049 13.5 0.0 2.9 3 0 0 3 3 2 1 Cytidylate kinase-like family ATP-synt_ab PF00006.20 gi|435850742|ref|YP_007312328.1| - 7.5e-05 22.3 0.1 0.039 13.4 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.10 gi|435850742|ref|YP_007312328.1| - 0.00013 21.7 4.0 2.2 7.9 0.0 5.0 3 2 2 5 5 5 1 NTPase KaiC PF06745.8 gi|435850742|ref|YP_007312328.1| - 0.00019 20.6 2.9 0.45 9.5 0.1 3.5 2 2 1 3 3 3 1 KaiC PhoH PF02562.11 gi|435850742|ref|YP_007312328.1| - 0.00019 20.7 0.1 0.33 10.1 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein AAA_30 PF13604.1 gi|435850742|ref|YP_007312328.1| - 0.00031 20.3 0.1 0.3 10.6 0.0 2.8 3 0 0 3 3 2 1 AAA domain Parvo_NS1 PF01057.12 gi|435850742|ref|YP_007312328.1| - 0.00032 19.6 0.2 0.72 8.6 0.0 2.5 3 0 0 3 3 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|435850742|ref|YP_007312328.1| - 0.00033 19.7 0.0 0.14 11.0 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) UPF0079 PF02367.12 gi|435850742|ref|YP_007312328.1| - 0.00048 19.7 0.5 1.4 8.5 0.0 3.1 2 1 1 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 KAP_NTPase PF07693.9 gi|435850742|ref|YP_007312328.1| - 0.00096 18.2 0.1 1.7 7.5 0.1 2.9 2 1 1 3 3 3 1 KAP family P-loop domain NB-ARC PF00931.17 gi|435850742|ref|YP_007312328.1| - 0.0018 17.2 0.0 1.1 8.0 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain Bac_DnaA PF00308.13 gi|435850742|ref|YP_007312328.1| - 0.0029 17.2 0.0 1.9 8.0 0.0 2.9 2 1 0 2 2 2 1 Bacterial dnaA protein AAA_11 PF13086.1 gi|435850742|ref|YP_007312328.1| - 0.0034 16.9 0.0 1.3 8.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain CPT PF07931.7 gi|435850742|ref|YP_007312328.1| - 0.0058 16.2 0.0 1.6 8.2 0.0 2.7 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein SKI PF01202.17 gi|435850742|ref|YP_007312328.1| - 0.0061 16.4 0.2 3.6 7.4 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase Guanylate_kin PF00625.16 gi|435850742|ref|YP_007312328.1| - 0.013 14.9 0.3 3.7 6.9 0.0 3.8 3 1 1 4 4 4 0 Guanylate kinase KTI12 PF08433.5 gi|435850742|ref|YP_007312328.1| - 0.013 14.6 0.0 5.2 6.1 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_23 PF13476.1 gi|435850742|ref|YP_007312328.1| - 0.016 15.5 0.1 7.2 6.8 0.0 2.7 3 0 0 3 3 2 0 AAA domain Vps4_C PF09336.5 gi|435850742|ref|YP_007312328.1| - 0.017 14.9 0.1 0.65 9.9 0.0 2.6 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain AFG1_ATPase PF03969.11 gi|435850742|ref|YP_007312328.1| - 0.023 13.5 0.0 1.2 7.8 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase Viral_helicase1 PF01443.13 gi|435850742|ref|YP_007312328.1| - 0.027 13.9 0.0 0.94 8.9 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase IPT PF01745.11 gi|435850742|ref|YP_007312328.1| - 0.028 13.6 0.1 8.3 5.4 0.0 2.6 2 0 0 2 2 2 0 Isopentenyl transferase T2SE PF00437.15 gi|435850742|ref|YP_007312328.1| - 0.032 13.1 0.0 3 6.6 0.0 2.7 2 1 0 3 3 3 0 Type II/IV secretion system protein ResIII PF04851.10 gi|435850742|ref|YP_007312328.1| - 0.038 13.8 0.0 14 5.4 0.0 2.7 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Zot PF05707.7 gi|435850742|ref|YP_007312328.1| - 0.052 13.0 1.5 6.8 6.1 0.1 4.0 3 2 1 4 4 4 0 Zonular occludens toxin (Zot) MCM PF00493.18 gi|435850742|ref|YP_007312328.1| - 0.11 11.3 0.6 13 4.4 0.0 3.2 4 0 0 4 4 3 0 MCM2/3/5 family AAA_10 PF12846.2 gi|435850742|ref|YP_007312328.1| - 0.14 11.6 2.5 2.9 7.2 0.0 3.3 3 1 0 4 4 3 0 AAA-like domain OrfB_IS605 PF01385.14 gi|435850743|ref|YP_007312329.1| - 3.3e-33 115.0 6.4 4.9e-33 114.4 4.4 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435850743|ref|YP_007312329.1| - 8.6e-23 79.7 0.3 2.3e-22 78.4 0.2 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435850743|ref|YP_007312329.1| - 7e-13 47.6 0.2 2.1e-12 46.1 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain Exo_endo_phos_2 PF14529.1 gi|435850743|ref|YP_007312329.1| - 0.007 15.9 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase UPF0081 PF03652.10 gi|435850743|ref|YP_007312329.1| - 0.03 14.4 0.1 0.17 12.0 0.0 2.3 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0081) Y1_Tnp PF01797.11 gi|435850744|ref|YP_007312330.1| - 5.4e-37 126.3 1.4 6.2e-37 126.1 1.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like Peptidase_M76 PF09768.4 gi|435850744|ref|YP_007312330.1| - 0.069 12.6 0.1 0.085 12.3 0.1 1.2 1 0 0 1 1 1 0 Peptidase M76 family AMP-binding_C_2 PF14535.1 gi|435850745|ref|YP_007312331.1| - 1e-22 79.9 0.0 2.2e-22 78.8 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|435850745|ref|YP_007312331.1| - 1.3e-14 53.4 0.0 2.4e-14 52.5 0.0 1.5 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.8 gi|435850745|ref|YP_007312331.1| - 0.017 13.6 0.0 0.07 11.6 0.0 1.9 2 0 0 2 2 2 0 GH3 auxin-responsive promoter HisG PF01634.13 gi|435850746|ref|YP_007312332.1| - 1.4e-41 141.7 0.0 2.2e-41 141.1 0.0 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|435850746|ref|YP_007312332.1| - 2.2e-25 88.3 0.0 4.9e-25 87.2 0.0 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain UPF0016 PF01169.14 gi|435850747|ref|YP_007312333.1| - 5.2e-43 145.0 18.1 4.3e-23 81.2 4.0 2.0 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 TauE PF01925.14 gi|435850747|ref|YP_007312333.1| - 2.2e-07 30.5 9.5 0.00062 19.2 0.2 2.2 1 1 0 2 2 2 2 Sulfite exporter TauE/SafE TerC PF03741.11 gi|435850747|ref|YP_007312333.1| - 4.8e-06 26.1 8.7 7.7e-05 22.2 6.1 2.0 1 1 0 1 1 1 1 Integral membrane protein TerC family Syndecan PF01034.15 gi|435850747|ref|YP_007312333.1| - 0.00019 20.9 1.7 0.0011 18.6 0.0 2.4 2 0 0 2 2 2 1 Syndecan domain MFS_1 PF07690.11 gi|435850747|ref|YP_007312333.1| - 0.017 13.8 8.8 0.085 11.5 6.1 1.8 1 1 0 1 1 1 0 Major Facilitator Superfamily Acyl_transf_3 PF01757.17 gi|435850747|ref|YP_007312333.1| - 0.023 13.5 3.9 0.02 13.7 2.1 1.4 1 1 0 1 1 1 0 Acyltransferase family PhaG_MnhG_YufB PF03334.9 gi|435850747|ref|YP_007312333.1| - 0.036 14.0 2.9 0.036 14.0 2.0 2.8 3 0 0 3 3 3 0 Na+/H+ antiporter subunit DUF4234 PF14018.1 gi|435850747|ref|YP_007312333.1| - 0.039 13.6 1.4 0.31 10.8 1.0 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) DUF4306 PF14154.1 gi|435850747|ref|YP_007312333.1| - 0.19 11.7 2.6 0.29 11.1 1.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4306) DUF1774 PF08611.5 gi|435850747|ref|YP_007312333.1| - 0.32 11.1 6.2 0.56 10.3 0.5 2.4 2 0 0 2 2 2 0 Fungal protein of unknown function (DUF1774) DUF4131 PF13567.1 gi|435850747|ref|YP_007312333.1| - 0.66 9.3 5.7 16 4.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DsbD_2 PF13386.1 gi|435850747|ref|YP_007312333.1| - 0.66 9.6 10.5 1.5 8.4 1.0 2.2 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region DUF4181 PF13789.1 gi|435850747|ref|YP_007312333.1| - 2.2 8.2 10.0 0.097 12.5 1.8 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4181) Tetraspannin PF00335.15 gi|435850747|ref|YP_007312333.1| - 4.4 6.5 6.9 72 2.5 4.8 2.3 1 1 0 1 1 1 0 Tetraspanin family FAM92 PF06730.6 gi|435850748|ref|YP_007312334.1| - 0.026 13.8 0.1 0.029 13.6 0.0 1.0 1 0 0 1 1 1 0 FAM92 protein DUF1059 PF06348.6 gi|435850748|ref|YP_007312334.1| - 0.076 12.8 1.0 0.14 12.0 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1059) FAD_binding_3 PF01494.14 gi|435850749|ref|YP_007312335.1| - 5.3e-17 61.9 0.3 9.3e-09 34.7 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|435850749|ref|YP_007312335.1| - 1e-13 50.9 1.8 1.5e-06 27.3 0.1 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|435850749|ref|YP_007312335.1| - 1.2e-13 50.5 0.1 4.7e-07 28.8 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.9 gi|435850749|ref|YP_007312335.1| - 3.4e-09 35.6 1.0 3e-07 29.2 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|435850749|ref|YP_007312335.1| - 1.8e-08 34.5 0.5 5.6e-08 32.9 0.4 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|435850749|ref|YP_007312335.1| - 5.2e-08 32.3 0.2 7.4e-08 31.8 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|435850749|ref|YP_007312335.1| - 7.4e-08 31.6 0.8 1.4e-07 30.6 0.4 1.5 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|435850749|ref|YP_007312335.1| - 5.9e-07 28.7 0.1 8.6e-05 21.6 0.1 2.3 2 1 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.12 gi|435850749|ref|YP_007312335.1| - 2.1e-05 23.7 0.4 4.1e-05 22.7 0.1 1.6 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|435850749|ref|YP_007312335.1| - 5.2e-05 23.1 0.3 0.00019 21.3 0.2 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|435850749|ref|YP_007312335.1| - 5.8e-05 22.1 2.6 0.00028 19.8 0.2 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|435850749|ref|YP_007312335.1| - 0.028 14.4 0.0 0.045 13.8 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|435850749|ref|YP_007312335.1| - 0.04 14.3 1.8 0.35 11.2 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|435850749|ref|YP_007312335.1| - 0.077 13.2 0.0 0.21 11.8 0.0 1.9 1 1 0 1 1 1 0 Putative NAD(P)-binding GATase_3 PF07685.9 gi|435850750|ref|YP_007312336.1| - 3e-32 111.4 0.6 4.8e-32 110.7 0.4 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|435850750|ref|YP_007312336.1| - 1.4e-24 86.6 0.1 2.3e-24 85.8 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|435850750|ref|YP_007312336.1| - 3.7e-15 56.0 2.7 4.8e-13 49.1 1.9 2.6 1 1 0 1 1 1 1 AAA domain Peptidase_S51 PF03575.12 gi|435850750|ref|YP_007312336.1| - 0.0033 17.1 0.0 0.0085 15.8 0.0 1.7 1 0 0 1 1 1 1 Peptidase family S51 AAA_25 PF13481.1 gi|435850750|ref|YP_007312336.1| - 0.012 15.0 1.3 1.4 8.2 0.5 3.0 2 1 0 2 2 2 0 AAA domain DUF1611 PF07755.6 gi|435850750|ref|YP_007312336.1| - 0.016 13.8 0.1 2.9 6.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) MobB PF03205.9 gi|435850750|ref|YP_007312336.1| - 0.095 12.4 0.9 0.19 11.4 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|435850750|ref|YP_007312336.1| - 0.098 12.0 0.3 6.6 6.1 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SNO PF01174.14 gi|435850750|ref|YP_007312336.1| - 0.12 11.9 0.1 0.32 10.6 0.0 1.6 2 0 0 2 2 2 0 SNO glutamine amidotransferase family Fer4_NifH PF00142.13 gi|435850751|ref|YP_007312337.1| - 4.8e-90 301.4 0.8 5.5e-90 301.2 0.5 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|435850751|ref|YP_007312337.1| - 2.9e-12 46.4 0.0 4.7e-12 45.7 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|435850751|ref|YP_007312337.1| - 5.3e-08 32.2 0.1 3.3e-07 29.6 0.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|435850751|ref|YP_007312337.1| - 2.8e-06 27.3 0.0 7.1e-06 26.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|435850751|ref|YP_007312337.1| - 8.7e-05 21.4 0.1 0.00013 20.8 0.1 1.2 1 0 0 1 1 1 1 ArgK protein AAA_10 PF12846.2 gi|435850751|ref|YP_007312337.1| - 0.00036 20.0 0.0 0.00054 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain MipZ PF09140.6 gi|435850751|ref|YP_007312337.1| - 0.00081 18.5 0.3 0.0063 15.6 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.17 gi|435850751|ref|YP_007312337.1| - 0.0027 17.1 0.0 0.0051 16.2 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|435850751|ref|YP_007312337.1| - 0.0045 16.7 0.1 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CPSase_L_chain PF00289.17 gi|435850751|ref|YP_007312337.1| - 0.012 15.6 0.0 0.12 12.4 0.0 2.3 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AAA_16 PF13191.1 gi|435850751|ref|YP_007312337.1| - 0.015 15.3 0.1 0.18 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|435850751|ref|YP_007312337.1| - 0.02 14.4 0.0 0.049 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|435850751|ref|YP_007312337.1| - 0.021 14.2 0.7 0.033 13.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|435850751|ref|YP_007312337.1| - 0.025 14.1 0.2 0.041 13.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|435850751|ref|YP_007312337.1| - 0.028 13.9 0.3 1.6 8.1 0.1 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.17 gi|435850751|ref|YP_007312337.1| - 0.049 12.4 0.0 0.074 11.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.12 gi|435850751|ref|YP_007312337.1| - 0.073 12.4 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein ADH_N_assoc PF13823.1 gi|435850751|ref|YP_007312337.1| - 0.079 12.6 0.1 0.19 11.3 0.1 1.7 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-associated AAA_17 PF13207.1 gi|435850751|ref|YP_007312337.1| - 0.27 12.0 1.1 0.56 11.0 0.7 2.0 1 1 0 1 1 1 0 AAA domain Oxidored_nitro PF00148.14 gi|435850752|ref|YP_007312338.1| - 7.1e-17 61.1 0.0 1.3e-16 60.2 0.0 1.4 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SHOCT PF09851.4 gi|435850752|ref|YP_007312338.1| - 0.018 14.5 0.2 0.05 13.0 0.1 1.7 1 0 0 1 1 1 0 Short C-terminal domain GvpG PF05120.7 gi|435850752|ref|YP_007312338.1| - 0.042 13.6 0.2 0.075 12.8 0.1 1.4 1 0 0 1 1 1 0 Gas vesicle protein G Glyco_trans_4_2 PF13477.1 gi|435850752|ref|YP_007312338.1| - 0.099 12.4 0.1 12 5.6 0.0 3.2 3 1 1 4 4 4 0 Glycosyl transferase 4-like Mur_ligase_M PF08245.7 gi|435850753|ref|YP_007312339.1| - 0.00023 21.2 0.0 0.00041 20.4 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain HEM4 PF02602.10 gi|435850753|ref|YP_007312339.1| - 0.14 11.3 0.0 0.32 10.2 0.0 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD DUF2150 PF09920.4 gi|435850754|ref|YP_007312340.1| - 1.7e-63 213.6 4.0 2e-63 213.4 2.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) UPF0179 PF03684.8 gi|435850755|ref|YP_007312341.1| - 4e-47 159.3 0.2 4.5e-47 159.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|435850755|ref|YP_007312341.1| - 0.031 14.2 0.1 0.046 13.7 0.1 1.3 1 0 0 1 1 1 0 Transposase DDE domain Fe-ADH_2 PF13685.1 gi|435850756|ref|YP_007312342.1| - 6.1e-70 235.3 2.4 7.4e-70 235.1 1.7 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|435850756|ref|YP_007312342.1| - 5.7e-25 87.7 5.0 1.2e-24 86.6 3.5 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|435850756|ref|YP_007312342.1| - 1.1e-08 34.3 0.1 3.4e-08 32.7 0.1 1.7 1 1 0 1 1 1 1 3-dehydroquinate synthase LPP20 PF02169.11 gi|435850756|ref|YP_007312342.1| - 0.066 13.3 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 LPP20 lipoprotein DUF63 PF01889.12 gi|435850757|ref|YP_007312343.1| - 8.1e-102 340.9 18.0 9.2e-102 340.7 12.5 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF3367 PF11847.3 gi|435850757|ref|YP_007312343.1| - 2.5 5.9 5.5 0.41 8.5 0.3 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3367) RseC_MucC PF04246.7 gi|435850757|ref|YP_007312343.1| - 7.7 6.0 8.7 0.9 9.1 1.1 2.9 3 1 1 4 4 4 0 Positive regulator of sigma(E), RseC/MucC Lig_chan PF00060.21 gi|435850757|ref|YP_007312343.1| - 7.9 6.1 7.3 0.56 9.9 1.6 1.7 2 0 0 2 2 2 0 Ligand-gated ion channel DUF95 PF01944.12 gi|435850758|ref|YP_007312344.1| - 2.6e-30 105.3 22.5 3.1e-30 105.0 15.6 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF1297 PF06973.7 gi|435850759|ref|YP_007312345.1| - 1.1e-76 256.3 0.0 1.5e-76 255.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|435850759|ref|YP_007312345.1| - 1.3e-43 147.6 0.0 2.1e-43 147.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|435850759|ref|YP_007312345.1| - 0.046 13.4 0.0 4.7 6.9 0.0 2.3 1 1 1 2 2 2 0 ATP-grasp domain GTP_EFTU PF00009.22 gi|435850760|ref|YP_007312346.1| - 9.3e-45 152.3 0.0 1.4e-44 151.7 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|435850760|ref|YP_007312346.1| - 2.6e-29 101.1 0.8 6e-29 99.9 0.5 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|435850760|ref|YP_007312346.1| - 4.2e-05 23.5 0.1 0.00013 21.9 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|435850760|ref|YP_007312346.1| - 0.00029 20.3 2.6 0.5 9.8 0.4 3.2 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation Nop10p PF04135.7 gi|435850760|ref|YP_007312346.1| - 0.0018 17.9 0.8 0.0032 17.1 0.5 1.4 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family MMR_HSR1 PF01926.18 gi|435850760|ref|YP_007312346.1| - 0.0025 17.7 0.0 0.0059 16.5 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|435850760|ref|YP_007312346.1| - 0.081 12.2 1.3 11 5.2 0.0 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B cobW PF02492.14 gi|435850760|ref|YP_007312346.1| - 0.086 12.2 0.4 0.89 8.9 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Fcf1 PF04900.7 gi|435850761|ref|YP_007312347.1| - 4.8e-08 33.0 0.0 6.4e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|435850761|ref|YP_007312347.1| - 5e-05 23.4 0.2 0.00015 21.9 0.1 1.7 1 1 1 2 2 2 1 PIN domain DUF188 PF02639.9 gi|435850761|ref|YP_007312347.1| - 0.00092 18.6 0.1 0.0012 18.3 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 UPF0278 PF08745.6 gi|435850761|ref|YP_007312347.1| - 0.0088 15.3 0.1 0.046 12.9 0.1 1.8 1 1 1 2 2 2 1 UPF0278 family RNase_Zc3h12a PF11977.3 gi|435850761|ref|YP_007312347.1| - 0.12 12.2 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain XPG_I_2 PF12813.2 gi|435850761|ref|YP_007312347.1| - 0.13 11.6 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 XPG domain containing DDE_Tnp_1 PF01609.16 gi|435850762|ref|YP_007312348.1| - 3.7e-09 36.4 1.1 6e-09 35.7 0.7 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|435850762|ref|YP_007312348.1| - 0.00057 19.7 0.0 0.0015 18.3 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) SHS2_Rpb7-N PF03876.12 gi|435850763|ref|YP_007312349.1| - 2.4e-20 72.3 0.1 4.3e-20 71.5 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|435850763|ref|YP_007312349.1| - 2e-11 43.8 0.5 3.3e-11 43.1 0.1 1.6 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|435850763|ref|YP_007312349.1| - 0.047 13.8 0.0 0.095 12.9 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.8 gi|435850764|ref|YP_007312350.1| - 2.1e-13 49.9 0.9 2.6e-13 49.6 0.6 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger Laminin_EGF PF00053.19 gi|435850764|ref|YP_007312350.1| - 0.041 13.8 0.6 0.052 13.4 0.4 1.1 1 0 0 1 1 1 0 Laminin EGF-like (Domains III and V) RecR PF02132.10 gi|435850764|ref|YP_007312350.1| - 0.22 10.9 3.4 0.31 10.5 2.4 1.2 1 0 0 1 1 1 0 RecR protein PHF5 PF03660.9 gi|435850764|ref|YP_007312350.1| - 0.52 10.3 2.8 0.73 9.9 1.7 1.4 1 1 1 2 2 2 0 PHF5-like protein DUF359 PF04019.7 gi|435850765|ref|YP_007312351.1| - 3.1e-40 136.3 0.1 4.2e-40 135.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) SpoIIAA-like PF11964.3 gi|435850765|ref|YP_007312351.1| - 0.12 12.7 0.1 0.49 10.7 0.0 1.9 2 0 0 2 2 2 0 SpoIIAA-like Ribosomal_S24e PF01282.14 gi|435850766|ref|YP_007312352.1| - 2e-28 97.9 0.1 2.6e-28 97.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.14 gi|435850767|ref|YP_007312353.1| - 1e-20 73.2 4.3 1.1e-20 73.1 3.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.14 gi|435850767|ref|YP_007312353.1| - 2.9e-06 26.9 3.2 3.3e-06 26.7 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|435850767|ref|YP_007312353.1| - 0.00032 20.4 1.1 0.0004 20.1 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|435850767|ref|YP_007312353.1| - 0.00048 19.2 3.5 0.00095 18.3 2.4 1.6 1 1 0 1 1 1 1 zinc-ribbon domain IBR PF01485.16 gi|435850767|ref|YP_007312353.1| - 0.0012 18.6 0.4 0.0013 18.5 0.3 1.1 1 0 0 1 1 1 1 IBR domain OrfB_Zn_ribbon PF07282.6 gi|435850767|ref|YP_007312353.1| - 0.0015 18.1 1.1 0.0018 17.8 0.8 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|435850767|ref|YP_007312353.1| - 0.0046 16.3 2.9 0.33 10.4 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|435850767|ref|YP_007312353.1| - 0.0048 16.3 1.5 0.029 13.8 1.1 2.1 1 1 1 2 2 2 1 A2L zinc ribbon domain GCC2_GCC3 PF07699.8 gi|435850767|ref|YP_007312353.1| - 0.0076 15.8 1.8 0.0092 15.5 1.2 1.2 1 0 0 1 1 1 1 GCC2 and GCC3 Zn_Tnp_IS1595 PF12760.2 gi|435850767|ref|YP_007312353.1| - 0.022 14.5 5.2 0.034 13.9 3.4 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF1451 PF07295.6 gi|435850767|ref|YP_007312353.1| - 0.024 14.4 1.1 0.024 14.4 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DUF2082 PF09855.4 gi|435850767|ref|YP_007312353.1| - 0.029 14.2 4.0 0.22 11.4 0.5 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn_Tnp_IS91 PF14319.1 gi|435850767|ref|YP_007312353.1| - 0.031 13.7 0.7 0.031 13.7 0.5 1.0 1 0 0 1 1 1 0 Transposase zinc-binding domain GFA PF04828.9 gi|435850767|ref|YP_007312353.1| - 0.033 14.1 2.2 0.12 12.3 0.1 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HypA PF01155.14 gi|435850767|ref|YP_007312353.1| - 0.033 13.8 1.0 0.035 13.7 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1936 PF09151.5 gi|435850767|ref|YP_007312353.1| - 0.037 13.5 1.0 0.42 10.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) zf-NADH-PPase PF09297.6 gi|435850767|ref|YP_007312353.1| - 0.048 13.1 8.0 0.28 10.7 5.5 1.9 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain NCD3G PF07562.9 gi|435850767|ref|YP_007312353.1| - 0.048 13.3 0.8 0.055 13.2 0.5 1.2 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR Nudix_N_2 PF14803.1 gi|435850767|ref|YP_007312353.1| - 0.077 12.7 7.7 1.6 8.4 4.6 2.3 1 1 1 2 2 2 0 Nudix N-terminal RNA_POL_M_15KD PF02150.11 gi|435850767|ref|YP_007312353.1| - 0.08 12.6 0.9 0.15 11.7 0.5 1.5 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.14 gi|435850767|ref|YP_007312353.1| - 0.088 12.3 1.2 1.2 8.7 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF2387 PF09526.5 gi|435850767|ref|YP_007312353.1| - 0.12 12.3 1.9 0.25 11.2 1.3 1.6 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-HIT PF04438.11 gi|435850767|ref|YP_007312353.1| - 0.2 11.3 2.3 6.1 6.5 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger TF_Zn_Ribbon PF08271.7 gi|435850767|ref|YP_007312353.1| - 0.26 10.6 4.4 0.55 9.6 3.1 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|435850767|ref|YP_007312353.1| - 0.28 11.1 3.4 0.27 11.2 0.3 1.9 1 1 1 2 2 2 0 zinc-finger zf-C2H2_3 PF13878.1 gi|435850767|ref|YP_007312353.1| - 0.31 10.6 4.1 6.9 6.3 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Auto_anti-p27 PF06677.7 gi|435850767|ref|YP_007312353.1| - 0.34 10.7 3.8 2.7 7.8 2.8 2.0 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.5 gi|435850767|ref|YP_007312353.1| - 0.48 10.4 5.5 2.6 8.0 0.5 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|435850767|ref|YP_007312353.1| - 0.5 10.6 2.9 0.73 10.1 2.0 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF3797 PF12677.2 gi|435850767|ref|YP_007312353.1| - 0.57 9.8 4.4 14 5.3 3.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) Opy2 PF09463.5 gi|435850767|ref|YP_007312353.1| - 0.69 10.0 4.1 5.6 7.1 2.9 2.0 1 1 0 1 1 1 0 Opy2 protein ADK_lid PF05191.9 gi|435850767|ref|YP_007312353.1| - 0.76 9.4 7.1 2.6 7.7 0.9 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid UPF0547 PF10571.4 gi|435850767|ref|YP_007312353.1| - 1.2 8.9 5.5 4.5 7.0 3.8 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|435850767|ref|YP_007312353.1| - 1.9 8.1 4.9 14 5.3 0.6 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|435850767|ref|YP_007312353.1| - 2.1 8.4 7.4 2.2 8.3 0.7 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|435850767|ref|YP_007312353.1| - 2.3 7.9 4.8 17 5.1 0.6 2.4 2 1 0 2 2 2 0 zinc-ribbon domain DUF2703 PF10865.3 gi|435850767|ref|YP_007312353.1| - 2.4 8.0 4.6 7.9 6.4 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF2703) FeS PF04060.8 gi|435850767|ref|YP_007312353.1| - 3.8 7.1 5.7 0.92 9.1 0.5 2.1 2 0 0 2 2 2 0 Putative Fe-S cluster DUF2162 PF09930.4 gi|435850768|ref|YP_007312354.1| - 7.2e-68 228.0 19.3 8.2e-68 227.8 13.4 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) Scs3p PF10261.4 gi|435850768|ref|YP_007312354.1| - 0.033 13.2 0.1 0.061 12.3 0.1 1.5 1 0 0 1 1 1 0 Inositol phospholipid synthesis and fat-storage-inducing TM MotA_ExbB PF01618.11 gi|435850769|ref|YP_007312355.1| - 4.5e-11 42.5 0.2 4.5e-11 42.5 0.2 1.5 2 0 0 2 2 2 1 MotA/TolQ/ExbB proton channel family NfeD PF01957.13 gi|435850769|ref|YP_007312355.1| - 0.068 13.2 2.0 1 9.4 0.0 2.1 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF3169 PF11368.3 gi|435850769|ref|YP_007312355.1| - 0.19 10.9 3.6 0.059 12.5 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) DUF3165 PF11364.3 gi|435850769|ref|YP_007312355.1| - 4.7 7.4 8.7 17 5.6 1.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3165) DUF2149 PF09919.4 gi|435850770|ref|YP_007312356.1| - 6.5e-33 112.6 0.2 7.6e-33 112.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) CobN-Mg_chel PF02514.11 gi|435850771|ref|YP_007312357.1| - 0 1267.9 10.6 0 1261.5 5.4 2.1 2 0 0 2 2 2 2 CobN/Magnesium Chelatase DUF3753 PF12575.3 gi|435850771|ref|YP_007312357.1| - 0.099 12.4 0.9 0.47 10.2 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) CobN-Mg_chel PF02514.11 gi|435850772|ref|YP_007312358.1| - 0 1152.7 3.7 0 1152.3 2.6 1.2 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CobN-Mg_chel PF02514.11 gi|435850773|ref|YP_007312359.1| - 0 1239.0 5.5 0 1238.7 3.8 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CarboxypepD_reg PF13620.1 gi|435850773|ref|YP_007312359.1| - 1.3e-27 95.6 26.8 3e-07 30.3 1.1 5.8 5 1 0 5 5 5 4 Carboxypeptidase regulatory-like domain fn3_3 PF14686.1 gi|435850773|ref|YP_007312359.1| - 1.9e-09 37.5 10.9 0.06 13.4 0.0 4.9 4 0 0 4 4 4 4 Polysaccharide lyase family 4, domain II DUF2012 PF09430.5 gi|435850773|ref|YP_007312359.1| - 5.9e-09 35.8 3.8 0.071 12.9 0.0 4.8 4 0 0 4 4 4 2 Protein of unknown function (DUF2012) Cna_B PF05738.8 gi|435850773|ref|YP_007312359.1| - 1e-08 34.8 23.1 0.012 15.4 0.2 5.3 6 0 0 6 6 6 4 Cna protein B-type domain SoxE PF06525.6 gi|435850773|ref|YP_007312359.1| - 0.0078 15.5 23.4 0.55 9.4 0.1 5.5 4 2 2 6 6 6 4 Sulfocyanin (SoxE) PfkB PF00294.19 gi|435850774|ref|YP_007312360.1| - 1.1e-44 152.7 0.0 1.4e-44 152.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|435850774|ref|YP_007312360.1| - 2.1e-08 33.6 0.0 3e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|435850774|ref|YP_007312360.1| - 0.00011 21.6 0.1 0.00015 21.1 0.0 1.1 1 0 0 1 1 1 1 Carbohydrate kinase PGM_PMM_II PF02879.11 gi|435850774|ref|YP_007312360.1| - 0.027 14.8 0.0 0.33 11.2 0.0 2.3 2 1 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II He_PIG PF05345.7 gi|435850775|ref|YP_007312361.1| - 4.8e-18 64.8 28.7 4.9e-06 26.4 1.1 7.5 7 0 0 7 7 7 5 Putative Ig domain Peptidase_S8 PF00082.17 gi|435850775|ref|YP_007312361.1| - 3.8e-14 52.5 1.4 3.8e-14 52.5 1.0 3.1 3 1 0 3 3 3 1 Subtilase family fn3 PF00041.16 gi|435850775|ref|YP_007312361.1| - 0.0016 18.5 7.8 0.027 14.5 1.4 4.7 4 1 0 4 4 4 1 Fibronectin type III domain PKD PF00801.15 gi|435850775|ref|YP_007312361.1| - 0.016 14.9 10.7 0.23 11.2 0.4 5.4 5 0 0 5 5 5 0 PKD domain Big_3_4 PF13754.1 gi|435850775|ref|YP_007312361.1| - 6.6 7.1 29.2 2.7 8.3 3.4 6.5 6 0 0 6 6 6 0 Bacterial Ig-like domain (group 3) LVIVD PF08309.6 gi|435850776|ref|YP_007312362.1| - 1.1e-81 267.5 63.5 1.3e-16 59.2 1.5 7.9 6 2 1 7 7 7 7 LVIVD repeat He_PIG PF05345.7 gi|435850776|ref|YP_007312362.1| - 2.1e-05 24.4 0.2 2.1e-05 24.4 0.1 4.9 4 0 0 4 4 4 1 Putative Ig domain Beta_propel PF09826.4 gi|435850776|ref|YP_007312362.1| - 0.00029 19.3 1.2 0.037 12.3 0.2 3.7 1 1 0 2 2 2 1 Beta propeller domain fn3 PF00041.16 gi|435850776|ref|YP_007312362.1| - 0.16 12.1 2.3 1 9.5 0.5 2.8 2 1 0 2 2 2 0 Fibronectin type III domain NHL PF01436.16 gi|435850776|ref|YP_007312362.1| - 1.8 8.7 10.0 3.5 7.7 0.2 4.0 3 0 0 3 3 3 0 NHL repeat FIVAR PF07554.8 gi|435850777|ref|YP_007312363.1| - 5.6e-09 35.9 20.1 0.009 16.2 4.2 4.3 3 0 0 3 3 3 3 Uncharacterised Sugar-binding Domain CAMP_factor PF07373.6 gi|435850777|ref|YP_007312363.1| - 5.3e-05 22.8 10.8 0.2 11.0 0.1 3.4 3 0 0 3 3 3 3 CAMP factor (Cfa) DUF148 PF02520.12 gi|435850777|ref|YP_007312363.1| - 0.0013 18.4 8.2 1.7 8.4 0.0 3.4 2 1 1 3 3 3 3 Domain of unknown function DUF148 Apc5 PF12862.2 gi|435850777|ref|YP_007312363.1| - 2.4 8.0 3.8 20 5.1 0.2 3.1 3 0 0 3 3 3 0 Anaphase-promoting complex subunit 5 MxiH PF09392.5 gi|435850777|ref|YP_007312363.1| - 5.4 7.6 17.7 2.1 8.9 2.8 3.5 3 0 0 3 3 3 0 Type III secretion needle MxiH like Peptidase_M22 PF00814.20 gi|435850778|ref|YP_007312364.1| - 2.2e-85 286.4 0.1 2.6e-85 286.1 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family CmcH_NodU PF02543.10 gi|435850778|ref|YP_007312364.1| - 0.023 13.8 0.0 0.03 13.4 0.0 1.2 1 0 0 1 1 1 0 Carbamoyltransferase RIO1 PF01163.17 gi|435850779|ref|YP_007312365.1| - 4e-10 39.3 0.0 7.5e-10 38.4 0.0 1.5 1 1 0 1 1 1 1 RIO1 family APH PF01636.18 gi|435850779|ref|YP_007312365.1| - 5.7e-10 39.3 0.1 5.4e-06 26.3 0.1 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|435850779|ref|YP_007312365.1| - 9e-09 34.6 0.0 8.5e-07 28.2 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|435850779|ref|YP_007312365.1| - 2.5e-07 30.1 0.0 2.8e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Choline_kinase PF01633.15 gi|435850779|ref|YP_007312365.1| - 1.1e-05 25.1 0.3 0.062 12.8 0.0 2.2 1 1 1 2 2 2 2 Choline/ethanolamine kinase WaaY PF06176.6 gi|435850779|ref|YP_007312365.1| - 9.7e-05 21.6 0.1 0.00011 21.5 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|435850779|ref|YP_007312365.1| - 0.00078 18.5 0.0 0.00085 18.4 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase EcKinase PF02958.15 gi|435850779|ref|YP_007312365.1| - 0.0029 16.7 0.0 0.0029 16.7 0.0 1.3 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.6 gi|435850779|ref|YP_007312365.1| - 0.0045 15.6 0.0 0.0057 15.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) Fructosamin_kin PF03881.9 gi|435850779|ref|YP_007312365.1| - 0.025 13.5 0.1 0.052 12.5 0.0 1.6 1 1 0 1 1 1 0 Fructosamine kinase Kinase-like PF14531.1 gi|435850779|ref|YP_007312365.1| - 0.13 11.2 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Kinase-like Ham1p_like PF01725.11 gi|435850780|ref|YP_007312366.1| - 1.1e-51 174.9 0.0 1.2e-51 174.8 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Qn_am_d_aIV PF09100.5 gi|435850780|ref|YP_007312366.1| - 0.066 12.8 0.1 0.43 10.2 0.0 2.0 1 1 0 1 1 1 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain IV Arch_flagellin PF01917.11 gi|435850782|ref|YP_007312368.1| - 2.1e-38 131.8 4.1 7.9e-25 87.5 4.1 2.1 1 1 1 2 2 2 2 Archaebacterial flagellin Cyclase PF04199.8 gi|435850783|ref|YP_007312369.1| - 3.9e-25 88.5 0.0 5.1e-25 88.1 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase PHP PF02811.14 gi|435850784|ref|YP_007312370.1| - 2.6e-16 59.9 0.3 3.7e-16 59.4 0.2 1.4 1 1 0 1 1 1 1 PHP domain SpoU_methylase PF00588.14 gi|435850784|ref|YP_007312370.1| - 0.0091 15.8 0.4 1.2 8.9 0.0 2.6 1 1 2 3 3 3 2 SpoU rRNA Methylase family PhageP22-tail PF09251.5 gi|435850784|ref|YP_007312370.1| - 0.043 12.0 0.0 0.078 11.2 0.0 1.3 1 0 0 1 1 1 0 Salmonella phage P22 tail-spike RNase_P_p30 PF01876.11 gi|435850784|ref|YP_007312370.1| - 0.089 12.0 0.0 0.14 11.3 0.0 1.6 1 1 0 1 1 1 0 RNase P subunit p30 DUF211 PF02680.9 gi|435850785|ref|YP_007312371.1| - 8.7e-40 134.4 0.8 9.5e-40 134.3 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.21 gi|435850785|ref|YP_007312371.1| - 0.16 12.1 0.4 0.44 10.7 0.1 1.9 1 1 0 2 2 2 0 Heavy-metal-associated domain FtsZ_C PF12327.3 gi|435850785|ref|YP_007312371.1| - 0.18 11.8 0.9 4.6 7.3 0.3 2.0 1 1 1 2 2 2 0 FtsZ family, C-terminal domain FtsJ PF01728.14 gi|435850786|ref|YP_007312372.1| - 4.8e-58 196.1 0.0 6.1e-58 195.7 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|435850786|ref|YP_007312372.1| - 2.8e-12 46.2 2.4 5e-12 45.4 1.7 1.4 1 0 0 1 1 1 1 TRAM domain Methyltransf_18 PF12847.2 gi|435850786|ref|YP_007312372.1| - 1.4e-06 28.8 0.1 0.0001 22.8 0.1 2.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|435850786|ref|YP_007312372.1| - 6.1e-06 26.0 0.0 2.9e-05 23.8 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435850786|ref|YP_007312372.1| - 7.6e-06 25.5 0.0 0.00022 20.8 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain DUF4265 PF14085.1 gi|435850786|ref|YP_007312372.1| - 0.0043 16.7 0.1 0.088 12.5 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4265) Methyltransf_11 PF08241.7 gi|435850786|ref|YP_007312372.1| - 0.018 15.5 0.0 0.083 13.3 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain NNMT_PNMT_TEMT PF01234.12 gi|435850786|ref|YP_007312372.1| - 0.064 12.2 0.0 3 6.7 0.0 2.2 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family BSD PF03909.12 gi|435850787|ref|YP_007312373.1| - 0.032 13.9 0.4 0.4 10.4 0.3 2.2 2 0 0 2 2 2 0 BSD domain IFNGR1 PF07140.6 gi|435850787|ref|YP_007312373.1| - 0.06 13.0 0.0 0.09 12.4 0.0 1.2 1 0 0 1 1 1 0 Interferon gamma receptor (IFNGR1) tRNA-synt_1 PF00133.17 gi|435850788|ref|YP_007312374.1| - 9.5e-67 225.3 0.9 4.5e-49 166.9 0.2 3.0 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|435850788|ref|YP_007312374.1| - 7.2e-31 107.2 1.5 5.3e-12 45.1 0.0 3.3 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|435850788|ref|YP_007312374.1| - 1.8e-22 79.7 0.1 3.5e-22 78.8 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|435850788|ref|YP_007312374.1| - 1.3e-10 40.8 0.0 1.9e-06 27.2 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|435850788|ref|YP_007312374.1| - 1.3e-08 34.3 0.0 2.8e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.14 gi|435850788|ref|YP_007312374.1| - 8.2e-05 21.5 0.0 0.00033 19.5 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (R) CGI-121 PF08617.5 gi|435850789|ref|YP_007312375.1| - 2.5e-19 69.5 0.5 3.1e-19 69.2 0.3 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 IMD PF08397.6 gi|435850789|ref|YP_007312375.1| - 0.034 13.4 0.1 0.047 12.9 0.0 1.2 1 0 0 1 1 1 0 IRSp53/MIM homology domain FBPase_glpX PF03320.8 gi|435850790|ref|YP_007312376.1| - 1.1e-115 385.5 7.2 1.3e-115 385.3 5.0 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Radical_SAM PF04055.16 gi|435850791|ref|YP_007312377.1| - 6.6e-24 84.9 0.2 1.4e-22 80.6 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|435850791|ref|YP_007312377.1| - 2.1e-21 75.5 0.8 3.8e-21 74.7 0.2 1.7 2 0 0 2 2 2 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|435850791|ref|YP_007312377.1| - 0.00019 21.1 0.0 0.00044 19.9 0.0 1.6 1 0 0 1 1 1 1 TRAM domain Voltage_CLC PF00654.15 gi|435850792|ref|YP_007312378.1| - 4.3e-92 308.8 33.3 4.3e-92 308.8 23.1 1.6 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.23 gi|435850792|ref|YP_007312378.1| - 5.3e-23 80.5 3.7 3.2e-11 42.8 0.1 3.0 3 0 0 3 3 3 2 CBS domain PIRT PF15099.1 gi|435850793|ref|YP_007312379.1| - 0.038 13.1 0.0 0.038 13.1 0.0 1.1 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family ATP-grasp_5 PF13549.1 gi|435850794|ref|YP_007312380.1| - 2.5e-80 268.8 0.1 4.4e-80 268.0 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|435850794|ref|YP_007312380.1| - 8.4e-56 187.3 2.2 1.8e-55 186.3 0.2 2.6 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|435850794|ref|YP_007312380.1| - 7.1e-28 97.1 8.2 1e-27 96.5 0.4 3.8 5 0 0 5 5 5 1 CoA binding domain CoA_binding PF02629.14 gi|435850794|ref|YP_007312380.1| - 2.7e-16 59.8 1.3 2.7e-16 59.8 0.9 2.8 3 0 0 3 3 3 1 CoA binding domain ATP-grasp_4 PF13535.1 gi|435850794|ref|YP_007312380.1| - 0.015 15.0 0.0 0.037 13.7 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|435850794|ref|YP_007312380.1| - 0.027 14.9 1.3 0.77 10.2 0.1 2.9 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Ligase_CoA PF00549.14 gi|435850794|ref|YP_007312380.1| - 0.028 14.0 0.0 0.29 10.7 0.0 2.4 2 0 0 2 2 2 0 CoA-ligase DRTGG PF07085.7 gi|435850795|ref|YP_007312381.1| - 1.7e-33 114.3 0.9 4.2e-33 113.0 0.1 2.0 2 0 0 2 2 2 1 DRTGG domain AAA_26 PF13500.1 gi|435850795|ref|YP_007312381.1| - 1.2e-28 100.1 0.2 3.3e-28 98.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|435850795|ref|YP_007312381.1| - 6.8e-09 35.4 0.1 1.4e-08 34.3 0.1 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Hpr_kinase_N PF02603.11 gi|435850795|ref|YP_007312381.1| - 0.00078 19.1 0.0 0.011 15.3 0.0 2.3 2 0 0 2 2 2 1 HPr Serine kinase N terminus AAA_31 PF13614.1 gi|435850795|ref|YP_007312381.1| - 0.012 15.5 0.1 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Peptidase_M55 PF04951.8 gi|435850795|ref|YP_007312381.1| - 0.028 13.6 0.0 2.6 7.1 0.0 2.2 1 1 1 2 2 2 0 D-aminopeptidase MobB PF03205.9 gi|435850795|ref|YP_007312381.1| - 0.034 13.8 0.2 0.32 10.7 0.0 2.6 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B FMN_red PF03358.10 gi|435850796|ref|YP_007312382.1| - 3.3e-34 117.6 0.0 4.1e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|435850796|ref|YP_007312382.1| - 6.4e-14 51.9 0.0 8.5e-14 51.5 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|435850796|ref|YP_007312382.1| - 0.002 18.1 0.0 0.0026 17.7 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain ACT_5 PF13710.1 gi|435850796|ref|YP_007312382.1| - 0.0099 15.6 0.0 0.47 10.2 0.0 2.5 2 0 0 2 2 2 1 ACT domain Flavodoxin_1 PF00258.20 gi|435850796|ref|YP_007312382.1| - 0.035 14.1 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin Fer4_8 PF13183.1 gi|435850796|ref|YP_007312382.1| - 0.04 13.9 0.1 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain PGK PF00162.14 gi|435850797|ref|YP_007312383.1| - 3.4e-120 401.1 0.4 3.9e-120 400.9 0.3 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase AMMECR1 PF01871.12 gi|435850798|ref|YP_007312384.1| - 5e-58 195.0 0.0 6.1e-58 194.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Nuc_deoxyrib_tr PF05014.10 gi|435850799|ref|YP_007312385.1| - 5.5e-31 106.7 0.0 6.4e-31 106.5 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase TIR_2 PF13676.1 gi|435850799|ref|YP_007312385.1| - 0.00029 20.9 0.0 0.00048 20.2 0.0 1.4 1 1 0 1 1 1 1 TIR domain DUF4406 PF14359.1 gi|435850799|ref|YP_007312385.1| - 0.00073 19.5 0.0 0.00097 19.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4406) Erythro-docking PF09277.6 gi|435850799|ref|YP_007312385.1| - 0.15 11.7 0.1 12 5.6 0.0 2.3 2 0 0 2 2 2 0 Erythronolide synthase, docking Arch_ATPase PF01637.13 gi|435850801|ref|YP_007312387.1| - 2.7e-31 109.0 0.0 6.3e-31 107.8 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|435850801|ref|YP_007312387.1| - 9.8e-27 93.0 0.7 2.2e-26 91.8 0.1 1.9 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|435850801|ref|YP_007312387.1| - 1.2e-09 38.1 0.1 5.8e-09 35.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|435850801|ref|YP_007312387.1| - 3e-08 33.8 0.0 7.5e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|435850801|ref|YP_007312387.1| - 9.3e-05 22.4 0.0 0.00036 20.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain HTH_45 PF14947.1 gi|435850801|ref|YP_007312387.1| - 0.00081 19.1 0.0 0.0018 18.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|435850801|ref|YP_007312387.1| - 0.0057 16.2 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Miro PF08477.8 gi|435850801|ref|YP_007312387.1| - 0.13 12.7 0.0 1.6 9.2 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein MarR_2 PF12802.2 gi|435850801|ref|YP_007312387.1| - 0.17 11.6 0.0 0.38 10.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.1 gi|435850802|ref|YP_007312388.1| - 6.3e-06 25.6 0.0 1.4e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|435850802|ref|YP_007312388.1| - 0.00041 20.1 0.2 0.00059 19.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|435850802|ref|YP_007312388.1| - 0.00082 18.9 0.0 0.0015 18.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.1 gi|435850802|ref|YP_007312388.1| - 0.0031 17.2 0.1 0.0048 16.6 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|435850802|ref|YP_007312388.1| - 0.016 14.6 0.1 0.033 13.6 0.0 1.5 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_31 PF13560.1 gi|435850802|ref|YP_007312388.1| - 0.026 14.7 0.0 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|435850802|ref|YP_007312388.1| - 0.03 13.7 0.0 0.054 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|435850802|ref|YP_007312388.1| - 0.042 13.5 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_19 PF12844.2 gi|435850802|ref|YP_007312388.1| - 0.046 13.7 0.0 0.07 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|435850802|ref|YP_007312388.1| - 0.05 13.2 0.3 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Cdd1 PF11731.3 gi|435850802|ref|YP_007312388.1| - 0.069 13.0 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 Pathogenicity locus DUF4473 PF14747.1 gi|435850802|ref|YP_007312388.1| - 0.093 12.9 0.0 0.15 12.2 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4473) ThiS PF02597.15 gi|435850803|ref|YP_007312389.1| - 6.5e-08 32.8 0.1 7e-08 32.7 0.0 1.0 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.1 gi|435850803|ref|YP_007312389.1| - 0.041 13.7 0.3 0.044 13.6 0.2 1.2 1 0 0 1 1 1 0 ThiS-like ubiquitin DUF1269 PF06897.7 gi|435850803|ref|YP_007312389.1| - 0.077 13.0 0.0 0.084 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) DUF59 PF01883.14 gi|435850804|ref|YP_007312390.1| - 1.6e-16 60.0 0.6 2.9e-16 59.2 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF59 Hexapep PF00132.19 gi|435850804|ref|YP_007312390.1| - 6.9e-13 47.4 8.9 6.7e-08 31.6 1.1 3.5 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|435850804|ref|YP_007312390.1| - 1.2e-09 37.6 10.1 3.2e-05 23.3 1.0 2.6 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|435850804|ref|YP_007312390.1| - 0.0002 21.5 0.0 0.00046 20.3 0.0 1.5 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal PALP PF00291.20 gi|435850805|ref|YP_007312391.1| - 6.7e-63 212.7 0.5 7.6e-63 212.5 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|435850805|ref|YP_007312391.1| - 0.0016 18.0 0.1 0.013 15.0 0.1 2.2 1 1 0 1 1 1 1 Zinc-binding dehydrogenase DFP PF04127.10 gi|435850805|ref|YP_007312391.1| - 0.068 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein THUMP PF02926.12 gi|435850806|ref|YP_007312392.1| - 1.4e-05 25.0 0.0 1.6e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 THUMP domain DUF1903 PF08991.5 gi|435850806|ref|YP_007312392.1| - 0.081 13.0 0.1 0.12 12.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1903) Cys_Met_Meta_PP PF01053.15 gi|435850807|ref|YP_007312393.1| - 1.2e-144 481.4 0.0 1.3e-144 481.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|435850807|ref|YP_007312393.1| - 6.2e-15 55.1 0.1 2.6e-14 53.0 0.2 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|435850807|ref|YP_007312393.1| - 1.5e-06 27.1 0.0 2.7e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|435850807|ref|YP_007312393.1| - 2.7e-06 26.6 0.0 4.3e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|435850807|ref|YP_007312393.1| - 0.00015 20.9 0.0 0.00028 20.1 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.11 gi|435850807|ref|YP_007312393.1| - 0.0013 17.5 0.0 0.0018 17.0 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Met_gamma_lyase PF06838.6 gi|435850807|ref|YP_007312393.1| - 0.11 10.7 0.2 8.5 4.5 0.0 2.1 2 0 0 2 2 2 0 Methionine gamma-lyase SLA_LP_auto_ag PF05889.8 gi|435850808|ref|YP_007312394.1| - 1.4e-22 79.7 0.0 2.2e-22 79.0 0.0 1.2 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|435850808|ref|YP_007312394.1| - 2.9e-20 72.3 0.0 4e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|435850808|ref|YP_007312394.1| - 1.7e-05 24.1 0.0 2.8e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|435850808|ref|YP_007312394.1| - 0.0027 16.7 0.0 0.0041 16.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|435850808|ref|YP_007312394.1| - 0.0048 15.9 0.3 0.0079 15.2 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF4384 PF14326.1 gi|435850809|ref|YP_007312395.1| - 0.13 12.1 0.0 12 5.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4384) PMBR PF09373.5 gi|435850809|ref|YP_007312395.1| - 0.21 11.6 1.8 0.77 9.8 0.1 2.5 2 0 0 2 2 2 0 Pseudomurein-binding repeat HTH_24 PF13412.1 gi|435850810|ref|YP_007312396.1| - 6.7e-07 28.5 0.1 9.2e-07 28.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|435850810|ref|YP_007312396.1| - 0.00033 20.1 0.0 0.00037 19.9 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|435850810|ref|YP_007312396.1| - 0.0024 18.1 0.0 0.0027 17.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|435850810|ref|YP_007312396.1| - 0.0029 17.2 0.0 0.0035 16.9 0.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|435850810|ref|YP_007312396.1| - 0.032 13.9 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2582 PF10771.4 gi|435850810|ref|YP_007312396.1| - 0.035 13.9 0.0 0.049 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) RNA_pol_Rpc34 PF05158.7 gi|435850810|ref|YP_007312396.1| - 0.12 11.4 0.0 0.13 11.3 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit B12-binding_2 PF02607.12 gi|435850812|ref|YP_007312398.1| - 3.2e-14 52.7 0.4 4e-14 52.3 0.3 1.1 1 0 0 1 1 1 1 B12 binding domain TraC PF07820.7 gi|435850812|ref|YP_007312398.1| - 0.0083 16.3 0.4 0.011 15.8 0.3 1.2 1 0 0 1 1 1 1 TraC-like protein Prenyltrans PF00432.16 gi|435850812|ref|YP_007312398.1| - 0.091 12.3 0.2 0.15 11.6 0.1 1.5 1 1 0 1 1 1 0 Prenyltransferase and squalene oxidase repeat FdhD-NarQ PF02634.10 gi|435850813|ref|YP_007312399.1| - 2.9e-66 223.3 0.1 3.3e-66 223.1 0.1 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DUF4096 PF13340.1 gi|435850814|ref|YP_007312400.1| - 2e-26 91.6 0.6 2e-26 91.6 0.4 1.9 2 1 0 2 2 2 1 Putative transposase of IS4/5 family (DUF4096) DDE_Tnp_1 PF01609.16 gi|435850814|ref|YP_007312400.1| - 1.3e-23 83.7 0.3 2e-23 83.0 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|435850814|ref|YP_007312400.1| - 3e-20 72.2 0.5 7.9e-20 70.8 0.4 1.8 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|435850814|ref|YP_007312400.1| - 8.5e-10 38.4 0.1 1.2e-09 37.9 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_7 PF13843.1 gi|435850814|ref|YP_007312400.1| - 0.013 14.5 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 Transposase IS4 DDE_Tnp_Tn3 PF01526.12 gi|435850814|ref|YP_007312400.1| - 0.013 14.1 0.0 0.018 13.6 0.0 1.1 1 0 0 1 1 1 0 Tn3 transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|435850814|ref|YP_007312400.1| - 0.015 15.0 0.0 0.067 12.9 0.0 1.8 1 1 0 1 1 1 0 Transposase DDE domain NadA PF02445.11 gi|435850815|ref|YP_007312401.1| - 1.1e-121 405.2 7.8 1.2e-121 405.0 5.4 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein HTH_5 PF01022.15 gi|435850816|ref|YP_007312402.1| - 1e-17 63.5 1.7 1.2e-17 63.2 0.3 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|435850816|ref|YP_007312402.1| - 1.7e-12 46.9 0.1 3e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|435850816|ref|YP_007312402.1| - 0.0011 19.0 0.1 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Arg_repressor PF01316.16 gi|435850816|ref|YP_007312402.1| - 0.037 13.5 1.9 0.043 13.3 0.0 2.2 3 1 0 3 3 3 0 Arginine repressor, DNA binding domain HTH_38 PF13936.1 gi|435850816|ref|YP_007312402.1| - 0.052 13.1 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|435850816|ref|YP_007312402.1| - 0.082 12.4 0.2 0.14 11.6 0.0 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit MarR_2 PF12802.2 gi|435850816|ref|YP_007312402.1| - 0.085 12.5 0.2 0.23 11.1 0.1 1.7 2 0 0 2 2 2 0 MarR family E1-E2_ATPase PF00122.15 gi|435850817|ref|YP_007312403.1| - 8.4e-52 175.4 1.0 8.4e-52 175.4 0.7 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|435850817|ref|YP_007312403.1| - 4.7e-45 154.6 2.5 1.2e-44 153.2 1.8 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|435850817|ref|YP_007312403.1| - 4.4e-24 84.3 0.1 1e-10 41.5 0.0 2.9 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|435850817|ref|YP_007312403.1| - 5.7e-14 52.7 0.0 2.4e-13 50.6 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|435850817|ref|YP_007312403.1| - 0.0082 15.7 5.8 0.015 14.8 0.3 3.3 4 0 0 4 4 4 1 haloacid dehalogenase-like hydrolase DUF3227 PF11537.3 gi|435850817|ref|YP_007312403.1| - 0.023 14.8 0.0 16 5.6 0.0 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3227) zf-LYAR PF08790.6 gi|435850817|ref|YP_007312403.1| - 0.023 14.3 1.3 6.2 6.6 0.1 2.3 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger zf-dskA_traR PF01258.12 gi|435850817|ref|YP_007312403.1| - 0.067 12.9 0.4 12 5.7 0.0 2.6 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger CPSase_L_chain PF00289.17 gi|435850817|ref|YP_007312403.1| - 0.14 12.2 2.1 8.8 6.4 0.0 4.3 5 0 0 5 5 5 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Peptidase_C71 PF12386.3 gi|435850817|ref|YP_007312403.1| - 0.16 11.4 0.1 18 4.7 0.0 2.4 2 0 0 2 2 2 0 Pseudomurein endo-isopeptidase Pei OST3_OST6 PF04756.8 gi|435850819|ref|YP_007312405.1| - 0.045 13.3 0.0 0.045 13.3 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family HTH_AsnC-type PF13404.1 gi|435850820|ref|YP_007312406.1| - 0.086 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|435850820|ref|YP_007312406.1| - 0.12 11.7 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding AAA PF00004.24 gi|435850822|ref|YP_007312408.1| - 3.4e-44 150.2 0.3 2e-43 147.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|435850822|ref|YP_007312408.1| - 5.6e-06 26.1 0.1 2.4e-05 24.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|435850822|ref|YP_007312408.1| - 1.7e-05 24.9 0.1 0.00041 20.4 0.1 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|435850822|ref|YP_007312408.1| - 4.6e-05 23.5 0.2 0.0019 18.3 0.2 2.5 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|435850822|ref|YP_007312408.1| - 6.9e-05 22.0 0.0 0.00027 20.0 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|435850822|ref|YP_007312408.1| - 0.00011 22.1 0.1 0.0011 18.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|435850822|ref|YP_007312408.1| - 0.00092 19.1 0.1 0.0028 17.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|435850822|ref|YP_007312408.1| - 0.0011 18.6 0.1 0.0024 17.5 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain KaiC PF06745.8 gi|435850822|ref|YP_007312408.1| - 0.0019 17.3 0.3 0.018 14.1 0.0 2.5 2 1 1 3 3 3 1 KaiC AAA_17 PF13207.1 gi|435850822|ref|YP_007312408.1| - 0.0024 18.6 0.1 0.0057 17.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|435850822|ref|YP_007312408.1| - 0.0029 16.5 0.0 0.0059 15.5 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF815) Leu_zip PF15294.1 gi|435850822|ref|YP_007312408.1| - 0.0051 15.9 0.8 0.0095 15.0 0.6 1.4 1 0 0 1 1 1 1 Leucine zipper AAA_3 PF07726.6 gi|435850822|ref|YP_007312408.1| - 0.0069 15.9 0.0 0.016 14.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|435850822|ref|YP_007312408.1| - 0.0073 16.3 0.1 0.074 13.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|435850822|ref|YP_007312408.1| - 0.0098 16.2 0.2 0.11 12.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|435850822|ref|YP_007312408.1| - 0.011 15.1 0.0 0.024 14.0 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein TIP49 PF06068.8 gi|435850822|ref|YP_007312408.1| - 0.014 14.1 0.1 0.035 12.8 0.0 1.6 1 0 0 1 1 1 0 TIP49 C-terminus RNA_helicase PF00910.17 gi|435850822|ref|YP_007312408.1| - 0.017 15.2 0.0 0.036 14.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.21 gi|435850822|ref|YP_007312408.1| - 0.019 14.4 0.1 0.19 11.2 0.0 2.5 3 0 0 3 3 3 0 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|435850822|ref|YP_007312408.1| - 0.03 13.4 0.1 0.074 12.1 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|435850822|ref|YP_007312408.1| - 0.036 13.4 0.5 0.13 11.6 0.1 2.1 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|435850822|ref|YP_007312408.1| - 0.039 13.5 0.0 0.081 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|435850822|ref|YP_007312408.1| - 0.04 13.0 0.0 0.067 12.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.1 gi|435850822|ref|YP_007312408.1| - 0.045 13.7 0.0 0.093 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|435850822|ref|YP_007312408.1| - 0.047 12.5 0.1 0.1 11.4 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_33 PF13671.1 gi|435850822|ref|YP_007312408.1| - 0.049 13.5 0.1 0.092 12.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|435850822|ref|YP_007312408.1| - 0.07 12.0 0.0 0.14 11.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|435850822|ref|YP_007312408.1| - 0.089 11.6 0.2 0.7 8.7 0.0 2.3 3 0 0 3 3 3 0 NB-ARC domain Penicillinase_R PF03965.11 gi|435850823|ref|YP_007312409.1| - 0.0072 16.4 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor PAT1 PF09770.4 gi|435850823|ref|YP_007312409.1| - 0.055 11.7 16.6 0.072 11.3 11.5 1.2 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 DUF131 PF01998.12 gi|435850824|ref|YP_007312410.1| - 1.4e-12 46.7 3.4 1.4e-12 46.7 2.4 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF131 Claudin_3 PF06653.6 gi|435850824|ref|YP_007312410.1| - 0.0069 16.1 1.0 0.0077 15.9 0.7 1.0 1 0 0 1 1 1 1 Tight junction protein, Claudin-like DUF872 PF05915.7 gi|435850824|ref|YP_007312410.1| - 0.01 15.6 1.6 0.014 15.2 1.1 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF4282 PF14110.1 gi|435850824|ref|YP_007312410.1| - 0.026 14.6 4.3 0.11 12.6 3.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) DUF2975 PF11188.3 gi|435850824|ref|YP_007312410.1| - 3.7 7.2 5.7 24 4.6 3.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) DUF131 PF01998.12 gi|435850825|ref|YP_007312411.1| - 2.8e-14 52.2 7.4 2.8e-14 52.2 5.1 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF2583 PF10762.4 gi|435850825|ref|YP_007312411.1| - 0.017 15.2 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2583) UvrB PF12344.3 gi|435850826|ref|YP_007312412.1| - 7.6e-21 73.3 0.5 1.6e-20 72.3 0.3 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|435850826|ref|YP_007312412.1| - 2.3e-16 59.4 0.1 5.8e-16 58.1 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|435850826|ref|YP_007312412.1| - 1e-12 48.2 0.0 2.8e-11 43.5 0.0 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|435850826|ref|YP_007312412.1| - 4.8e-11 41.8 5.0 1.7e-10 40.0 3.4 2.1 1 0 0 1 1 1 1 UvrB/uvrC motif DEAD PF00270.24 gi|435850826|ref|YP_007312412.1| - 3.9e-06 26.4 0.0 0.00033 20.1 0.0 3.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|435850826|ref|YP_007312412.1| - 0.0081 15.8 0.0 0.057 13.1 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain Kinesin PF00225.18 gi|435850826|ref|YP_007312412.1| - 0.035 12.8 0.0 0.064 11.9 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain ABC_tran PF00005.22 gi|435850826|ref|YP_007312412.1| - 0.066 13.5 0.1 3 8.1 0.0 2.6 2 0 0 2 2 2 0 ABC transporter Flavi_DEAD PF07652.9 gi|435850826|ref|YP_007312412.1| - 0.12 12.1 0.0 1.3 8.8 0.0 2.7 3 0 0 3 3 3 0 Flavivirus DEAD domain AAA_22 PF13401.1 gi|435850826|ref|YP_007312412.1| - 0.16 12.0 0.9 0.98 9.5 0.1 2.8 2 2 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|435850826|ref|YP_007312412.1| - 0.36 10.6 2.8 0.28 10.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF87 SOUL PF04832.7 gi|435850827|ref|YP_007312413.1| - 2e-45 154.4 0.0 2.2e-45 154.3 0.0 1.0 1 0 0 1 1 1 1 SOUL heme-binding protein FAD_binding_7 PF03441.9 gi|435850828|ref|YP_007312414.1| - 1.6e-93 312.9 0.0 2e-93 312.6 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|435850828|ref|YP_007312414.1| - 7.7e-45 152.6 0.0 1.3e-44 151.8 0.0 1.3 1 0 0 1 1 1 1 DNA photolyase MatE PF01554.13 gi|435850829|ref|YP_007312415.1| - 3.6e-37 127.4 42.7 2.5e-22 79.2 10.9 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|435850829|ref|YP_007312415.1| - 1.1e-08 34.9 25.5 2.5e-07 30.5 6.9 4.8 1 1 3 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Fer4 PF00037.22 gi|435850830|ref|YP_007312416.1| - 4.1e-12 45.1 13.2 3.1e-06 26.5 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435850830|ref|YP_007312416.1| - 2.9e-11 42.7 14.1 1.1e-06 28.2 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435850830|ref|YP_007312416.1| - 1.3e-10 41.3 23.3 3.6e-08 33.5 9.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435850830|ref|YP_007312416.1| - 4.2e-10 39.2 9.7 4.2e-10 39.2 6.7 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435850830|ref|YP_007312416.1| - 1.9e-07 31.3 17.6 0.00039 20.7 0.7 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435850830|ref|YP_007312416.1| - 5.1e-06 26.0 12.2 0.00018 21.2 0.9 3.1 3 1 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435850830|ref|YP_007312416.1| - 7.6e-06 25.6 11.8 7.6e-06 25.6 8.2 1.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435850830|ref|YP_007312416.1| - 1.5e-05 25.6 16.7 0.014 16.1 0.5 2.3 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|435850830|ref|YP_007312416.1| - 3.9e-05 23.6 19.0 4.7e-05 23.3 10.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435850830|ref|YP_007312416.1| - 0.00012 22.1 12.5 0.0019 18.3 1.5 2.9 3 1 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435850830|ref|YP_007312416.1| - 0.00068 20.0 14.8 0.0061 16.9 0.4 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435850830|ref|YP_007312416.1| - 0.006 16.8 20.5 0.012 15.9 0.8 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435850830|ref|YP_007312416.1| - 0.031 14.6 13.8 0.075 13.4 0.4 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|435850830|ref|YP_007312416.1| - 4.3 7.9 18.0 45 4.7 10.2 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain CdhD PF03599.11 gi|435850831|ref|YP_007312417.1| - 1.1e-09 37.2 0.0 1.5e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Antitoxin-MazE PF04014.13 gi|435850832|ref|YP_007312418.1| - 8.4e-06 25.3 0.0 1.5e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE GATA PF00320.22 gi|435850832|ref|YP_007312418.1| - 0.067 12.5 0.7 0.14 11.5 0.5 1.5 1 0 0 1 1 1 0 GATA zinc finger N6_Mtase PF02384.11 gi|435850833|ref|YP_007312419.1| - 2.6e-51 174.5 0.0 3.8e-51 174.0 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|435850833|ref|YP_007312419.1| - 2.6e-22 79.6 0.3 8.8e-22 78.0 0.2 2.0 1 0 0 1 1 1 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|435850833|ref|YP_007312419.1| - 2.3e-09 37.2 0.0 5.7e-09 36.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|435850833|ref|YP_007312419.1| - 0.00026 20.6 0.0 0.00051 19.6 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 DUF1016 PF06250.6 gi|435850834|ref|YP_007312420.1| - 7.2e-13 48.1 0.0 8.3e-13 47.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1016) Hypoth_Ymh PF09509.5 gi|435850835|ref|YP_007312421.1| - 6.9e-41 138.7 0.0 1e-40 138.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (Hypoth_ymh) Methylase_S PF01420.14 gi|435850836|ref|YP_007312422.1| - 4.3e-11 43.0 0.0 0.00029 20.8 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Hexokinase_1 PF00349.16 gi|435850837|ref|YP_007312423.1| - 0.0033 16.8 0.2 0.0094 15.3 0.0 1.8 2 1 0 2 2 2 1 Hexokinase TnpB_IS66 PF05717.8 gi|435850837|ref|YP_007312423.1| - 0.0051 16.2 0.0 0.022 14.1 0.0 2.0 2 0 0 2 2 2 1 IS66 Orf2 like protein HSDR_N PF04313.9 gi|435850839|ref|YP_007312425.1| - 1.7e-17 63.8 0.2 8.5e-17 61.5 0.0 2.3 3 0 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|435850839|ref|YP_007312425.1| - 6.4e-15 55.4 0.2 6.4e-15 55.4 0.2 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|435850839|ref|YP_007312425.1| - 1.4e-08 34.4 0.1 2.8e-08 33.4 0.1 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Flu_M1_C PF08289.6 gi|435850840|ref|YP_007312426.1| - 0.035 14.1 0.5 0.054 13.5 0.3 1.4 1 1 0 1 1 1 0 Influenza Matrix protein (M1) C-terminal domain Rubrerythrin PF02915.12 gi|435850841|ref|YP_007312427.1| - 3.3e-05 24.2 1.9 6.1e-05 23.3 1.3 1.4 1 0 0 1 1 1 1 Rubrerythrin DUF3450 PF11932.3 gi|435850841|ref|YP_007312427.1| - 0.0037 16.5 1.0 0.0039 16.4 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) DUF2383 PF09537.5 gi|435850841|ref|YP_007312427.1| - 0.014 15.6 0.5 0.02 15.1 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) Ferritin PF00210.19 gi|435850841|ref|YP_007312427.1| - 0.014 15.1 1.7 0.023 14.4 1.1 1.5 1 1 0 1 1 1 0 Ferritin-like domain DUF892 PF05974.7 gi|435850841|ref|YP_007312427.1| - 0.02 14.7 0.9 0.034 13.9 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF892) vATP-synt_E PF01991.13 gi|435850841|ref|YP_007312427.1| - 0.044 13.0 2.4 0.055 12.7 1.6 1.1 1 0 0 1 1 1 0 ATP synthase (E/31 kDa) subunit Phage_GP20 PF06810.6 gi|435850841|ref|YP_007312427.1| - 0.14 11.5 4.1 0.21 11.0 2.8 1.3 1 1 0 1 1 1 0 Phage minor structural protein GP20 KMP11 PF03037.11 gi|435850841|ref|YP_007312427.1| - 1.8 9.2 5.3 14 6.3 1.2 2.2 1 1 1 2 2 2 0 Kinetoplastid membrane protein 11 HEAT_2 PF13646.1 gi|435850842|ref|YP_007312428.1| - 9.2e-24 83.5 0.0 2.1e-23 82.4 0.0 1.5 1 1 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.11 gi|435850842|ref|YP_007312428.1| - 8.7e-16 56.7 0.1 6e-06 26.2 0.0 3.3 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|435850842|ref|YP_007312428.1| - 8.2e-13 48.4 0.0 0.00036 20.9 0.0 3.1 3 0 0 3 3 3 3 HEAT-like repeat HEAT PF02985.17 gi|435850842|ref|YP_007312428.1| - 1.9e-12 46.1 0.0 0.00025 20.8 0.0 3.1 3 0 0 3 3 3 3 HEAT repeat Arm PF00514.18 gi|435850842|ref|YP_007312428.1| - 1.7e-09 37.1 0.0 0.0001 21.9 0.0 3.1 1 1 2 3 3 3 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|435850842|ref|YP_007312428.1| - 0.0069 14.7 0.0 0.26 9.5 0.0 2.2 1 1 1 2 2 2 2 Adaptin N terminal region DUF3385 PF11865.3 gi|435850842|ref|YP_007312428.1| - 0.032 14.1 0.0 0.049 13.5 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3385) Aconitase_B_N PF11791.3 gi|435850842|ref|YP_007312428.1| - 0.061 13.1 0.0 1.6 8.5 0.0 2.1 1 1 1 2 2 2 0 Aconitate B N-terminal domain Vac14_Fab1_bd PF12755.2 gi|435850842|ref|YP_007312428.1| - 0.13 12.6 0.0 0.19 12.1 0.0 1.4 1 1 0 1 1 1 0 Vacuolar 14 Fab1-binding region PhoQ_Sensor PF08918.5 gi|435850843|ref|YP_007312429.1| - 0.00012 21.6 0.1 0.00033 20.2 0.1 1.7 1 0 0 1 1 1 1 PhoQ Sensor SIMPL PF04402.9 gi|435850844|ref|YP_007312430.1| - 7.4e-49 166.4 11.6 8.7e-49 166.2 8.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) TPPK_C PF12555.3 gi|435850844|ref|YP_007312430.1| - 0.089 12.5 0.7 0.089 12.5 0.5 1.8 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal HD PF01966.17 gi|435850845|ref|YP_007312431.1| - 2.1e-07 30.9 0.6 4.2e-07 30.0 0.3 1.6 2 0 0 2 2 2 1 HD domain SSF PF00474.12 gi|435850846|ref|YP_007312432.1| - 5.8e-47 160.2 33.5 8.6e-47 159.6 23.2 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family GPI2 PF06432.6 gi|435850846|ref|YP_007312432.1| - 2.7 7.2 12.3 0.045 13.0 0.2 3.0 1 1 1 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF3267 PF11667.3 gi|435850847|ref|YP_007312433.1| - 2.2e-24 85.8 10.0 2.2e-24 85.8 6.9 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF3267) DUF998 PF06197.8 gi|435850848|ref|YP_007312434.1| - 8.7e-25 87.0 18.9 1e-24 86.8 13.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) VIT1 PF01988.14 gi|435850848|ref|YP_007312434.1| - 0.48 9.8 11.0 0.37 10.2 6.4 1.7 1 1 0 1 1 1 0 VIT family DUF2569 PF10754.4 gi|435850848|ref|YP_007312434.1| - 0.75 9.9 5.9 0.38 10.9 2.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2569) DUF1422 PF07226.6 gi|435850848|ref|YP_007312434.1| - 0.96 9.2 8.2 0.19 11.4 0.7 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1422) LysE PF01810.13 gi|435850849|ref|YP_007312435.1| - 8.6e-24 83.8 18.7 1.1e-23 83.5 12.9 1.1 1 0 0 1 1 1 1 LysE type translocator Peptidase_S8 PF00082.17 gi|435850850|ref|YP_007312436.1| - 1.6e-47 162.0 6.8 2.7e-47 161.2 4.7 1.4 1 0 0 1 1 1 1 Subtilase family Big_2 PF02368.13 gi|435850850|ref|YP_007312436.1| - 2.2e-08 33.8 3.5 2.9e-08 33.4 0.5 2.8 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 2) PALP PF00291.20 gi|435850851|ref|YP_007312437.1| - 1.1e-23 84.0 0.0 1.8e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thr_synth_N PF14821.1 gi|435850851|ref|YP_007312437.1| - 8.8e-19 67.3 0.1 3.9e-18 65.2 0.0 2.2 2 0 0 2 2 2 1 Threonine synthase N terminus DUF21 PF01595.15 gi|435850852|ref|YP_007312438.1| - 1.6e-48 164.4 11.9 2.4e-48 163.8 8.2 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|435850852|ref|YP_007312438.1| - 4.5e-23 80.8 1.5 9e-23 79.8 0.3 2.2 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|435850852|ref|YP_007312438.1| - 3.5e-18 65.1 6.8 6.2e-11 41.9 0.1 3.7 4 0 0 4 4 4 2 CBS domain MFS_1 PF07690.11 gi|435850853|ref|YP_007312439.1| - 9e-67 225.2 69.6 5.8e-50 169.9 25.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|435850853|ref|YP_007312439.1| - 2.7e-08 32.6 28.6 3.5e-05 22.3 3.0 2.7 2 1 1 3 3 3 2 MFS/sugar transport protein NapE PF06796.6 gi|435850853|ref|YP_007312439.1| - 5.9 6.2 9.0 2.6 7.4 1.2 3.5 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE Mem_trans PF03547.13 gi|435850853|ref|YP_007312439.1| - 7.2 4.7 17.7 0.025 12.8 0.9 3.1 2 1 1 3 3 3 0 Membrane transport protein cobW PF02492.14 gi|435850854|ref|YP_007312440.1| - 1.4e-21 76.7 0.3 1.6e-21 76.5 0.2 1.0 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|435850854|ref|YP_007312440.1| - 0.00071 19.8 0.6 0.0016 18.7 0.1 1.8 2 1 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|435850854|ref|YP_007312440.1| - 0.0028 16.4 0.2 1.7 7.3 0.0 2.3 2 0 0 2 2 2 2 ArgK protein ATP_bind_1 PF03029.12 gi|435850854|ref|YP_007312440.1| - 0.029 13.9 2.0 0.57 9.6 1.4 2.2 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein YojJ PF10372.4 gi|435850854|ref|YP_007312440.1| - 0.039 13.8 0.3 4 7.3 0.0 2.5 2 0 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus AAA_17 PF13207.1 gi|435850854|ref|YP_007312440.1| - 0.04 14.7 0.0 0.053 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|435850854|ref|YP_007312440.1| - 0.055 12.9 0.0 0.058 12.8 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|435850854|ref|YP_007312440.1| - 0.081 12.3 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Thymidylate_kin PF02223.12 gi|435850854|ref|YP_007312440.1| - 0.098 12.0 0.3 1.1 8.6 0.1 2.1 1 1 0 2 2 2 0 Thymidylate kinase CutA1 PF03091.10 gi|435850855|ref|YP_007312441.1| - 3.5e-27 94.0 1.9 4e-27 93.8 1.3 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DEP PF00610.16 gi|435850855|ref|YP_007312441.1| - 0.089 12.5 0.0 0.53 10.0 0.0 2.1 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) Abhydrolase_5 PF12695.2 gi|435850855|ref|YP_007312441.1| - 0.096 12.4 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase family TP6A_N PF04406.9 gi|435850856|ref|YP_007312442.1| - 6.1e-19 67.4 0.1 1.1e-18 66.6 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase S1_2 PF13509.1 gi|435850856|ref|YP_007312442.1| - 0.0058 16.5 0.0 0.017 15.0 0.0 1.7 1 0 0 1 1 1 1 S1 domain Tn7_Tnp_TnsA_N PF08722.6 gi|435850856|ref|YP_007312442.1| - 0.088 12.8 0.1 0.37 10.8 0.0 2.1 2 0 0 2 2 2 0 TnsA endonuclease N terminal Methyltrans_Mon PF14314.1 gi|435850856|ref|YP_007312442.1| - 0.15 9.9 0.1 0.2 9.4 0.0 1.1 1 0 0 1 1 1 0 Virus-capping methyltransferase Topo-VIb_trans PF09239.6 gi|435850857|ref|YP_007312443.1| - 1e-70 236.4 0.0 1.7e-70 235.6 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|435850857|ref|YP_007312443.1| - 2.2e-13 49.8 0.0 4.2e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|435850857|ref|YP_007312443.1| - 1.8e-10 40.5 0.0 4.1e-10 39.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|435850857|ref|YP_007312443.1| - 0.0038 15.8 0.0 0.0093 14.5 0.0 1.6 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_5 PF14501.1 gi|435850857|ref|YP_007312443.1| - 0.014 15.1 0.2 0.046 13.4 0.0 1.9 2 0 0 2 2 2 0 GHKL domain MAF_flag10 PF01973.13 gi|435850857|ref|YP_007312443.1| - 0.023 14.2 0.0 0.054 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF115 HATPase_c_2 PF13581.1 gi|435850857|ref|YP_007312443.1| - 0.036 13.8 0.0 0.38 10.5 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain AsnC_trans_reg PF01037.16 gi|435850858|ref|YP_007312444.1| - 5.9e-11 41.9 0.1 6.6e-11 41.7 0.1 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|435850858|ref|YP_007312444.1| - 0.0014 18.2 0.1 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 GYD domain MIase PF02426.11 gi|435850858|ref|YP_007312444.1| - 0.0074 16.0 0.0 0.0083 15.9 0.0 1.1 1 0 0 1 1 1 1 Muconolactone delta-isomerase Chlor_dismutase PF06778.7 gi|435850858|ref|YP_007312444.1| - 0.023 14.3 0.1 0.025 14.3 0.0 1.1 1 0 0 1 1 1 0 Chlorite dismutase Ribosomal_L10 PF00466.15 gi|435850858|ref|YP_007312444.1| - 0.14 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L10 AAA PF00004.24 gi|435850859|ref|YP_007312445.1| - 4.4e-12 46.3 0.2 2e-11 44.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|435850859|ref|YP_007312445.1| - 2.9e-11 42.7 0.2 9e-05 21.3 0.0 2.3 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|435850859|ref|YP_007312445.1| - 6.5e-07 29.5 0.1 0.0011 19.0 0.0 3.2 3 1 1 4 4 3 2 AAA domain RuvB_N PF05496.7 gi|435850859|ref|YP_007312445.1| - 4.9e-06 25.7 0.0 1.1e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|435850859|ref|YP_007312445.1| - 1.5e-05 25.0 0.0 3.4e-05 23.9 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|435850859|ref|YP_007312445.1| - 0.0001 23.1 0.2 0.00052 20.8 0.0 2.3 3 0 0 3 3 2 1 AAA domain AAA_14 PF13173.1 gi|435850859|ref|YP_007312445.1| - 0.00011 22.1 0.0 0.00037 20.3 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|435850859|ref|YP_007312445.1| - 0.00032 20.4 0.0 0.0008 19.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|435850859|ref|YP_007312445.1| - 0.00038 19.6 0.0 0.00077 18.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.12 gi|435850859|ref|YP_007312445.1| - 0.00058 19.3 0.0 0.0013 18.1 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF815 PF05673.8 gi|435850859|ref|YP_007312445.1| - 0.00093 18.1 0.0 0.0026 16.7 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|435850859|ref|YP_007312445.1| - 0.0021 18.1 0.0 0.041 14.0 0.0 2.6 2 0 0 2 2 2 1 RNA helicase NACHT PF05729.7 gi|435850859|ref|YP_007312445.1| - 0.003 17.2 0.0 0.15 11.7 0.0 2.7 3 0 0 3 3 2 1 NACHT domain AAA_2 PF07724.9 gi|435850859|ref|YP_007312445.1| - 0.0046 16.8 0.0 0.028 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_30 PF13604.1 gi|435850859|ref|YP_007312445.1| - 0.0049 16.4 0.5 0.014 14.9 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|435850859|ref|YP_007312445.1| - 0.0064 16.3 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain IPT PF01745.11 gi|435850859|ref|YP_007312445.1| - 0.0075 15.4 0.0 0.026 13.6 0.0 1.8 2 0 0 2 2 2 1 Isopentenyl transferase AAA_18 PF13238.1 gi|435850859|ref|YP_007312445.1| - 0.011 15.9 0.6 0.094 13.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|435850859|ref|YP_007312445.1| - 0.029 13.5 0.0 0.056 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|435850859|ref|YP_007312445.1| - 0.03 14.0 0.0 0.068 12.9 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain PhoH PF02562.11 gi|435850859|ref|YP_007312445.1| - 0.032 13.4 0.0 0.46 9.6 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein DEAD PF00270.24 gi|435850859|ref|YP_007312445.1| - 0.044 13.2 0.1 2.9 7.3 0.0 2.5 1 1 0 2 2 2 0 DEAD/DEAH box helicase NB-ARC PF00931.17 gi|435850859|ref|YP_007312445.1| - 0.051 12.4 0.0 0.11 11.2 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Sigma54_activat PF00158.21 gi|435850859|ref|YP_007312445.1| - 0.098 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|435850859|ref|YP_007312445.1| - 0.14 12.2 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain PTA_PTB PF01515.14 gi|435850860|ref|YP_007312446.1| - 0.00087 18.4 0.2 0.27 10.2 0.3 2.2 1 1 1 2 2 2 2 Phosphate acetyl/butaryl transferase Thymidylat_synt PF00303.14 gi|435850861|ref|YP_007312447.1| - 2.9e-12 46.1 0.1 1.7e-11 43.6 0.1 1.9 1 1 0 1 1 1 1 Thymidylate synthase Zn_Tnp_IS1595 PF12760.2 gi|435850861|ref|YP_007312447.1| - 0.004 16.9 0.4 0.0077 16.0 0.3 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|435850861|ref|YP_007312447.1| - 0.79 9.4 3.1 1.7 8.3 0.0 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS ILVD_EDD PF00920.16 gi|435850864|ref|YP_007312450.1| - 5.1e-223 741.2 6.4 5.7e-223 741.0 4.4 1.0 1 0 0 1 1 1 1 Dehydratase family Radical_SAM PF04055.16 gi|435850865|ref|YP_007312451.1| - 1.9e-14 54.1 0.0 6.2e-14 52.5 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.2 gi|435850865|ref|YP_007312451.1| - 1.2e-09 37.9 0.0 2.9e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|435850865|ref|YP_007312451.1| - 2.1e-05 24.2 0.0 7.5e-05 22.5 0.0 1.9 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH PF00633.18 gi|435850865|ref|YP_007312451.1| - 6.2e-05 22.4 0.0 0.00021 20.8 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|435850865|ref|YP_007312451.1| - 0.034 14.3 0.0 0.15 12.2 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_8 PF14716.1 gi|435850865|ref|YP_007312451.1| - 0.038 14.1 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|435850865|ref|YP_007312451.1| - 0.15 11.9 0.0 0.45 10.4 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif UPF0104 PF03706.8 gi|435850866|ref|YP_007312452.1| - 2.6e-36 125.4 25.0 3.2e-36 125.0 17.4 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) NTP_transferase PF00483.18 gi|435850867|ref|YP_007312453.1| - 2.9e-49 167.6 0.0 3.6e-49 167.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|435850867|ref|YP_007312453.1| - 1.7e-18 65.1 23.6 3.5e-07 29.4 0.3 4.8 1 1 3 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|435850867|ref|YP_007312453.1| - 1.5e-09 38.1 0.0 2.2e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|435850867|ref|YP_007312453.1| - 3.9e-08 32.7 20.3 1.2e-05 24.7 1.4 4.2 2 2 2 4 4 4 4 Hexapeptide repeat of succinyl-transferase Glycos_transf_2 PF00535.21 gi|435850867|ref|YP_007312453.1| - 0.0019 17.9 0.0 0.0032 17.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Fer4_12 PF13353.1 gi|435850867|ref|YP_007312453.1| - 0.11 12.6 0.0 5.5 7.1 0.0 2.3 1 1 0 2 2 2 0 4Fe-4S single cluster domain tRNA_anti-codon PF01336.20 gi|435850868|ref|YP_007312454.1| - 7.6e-10 38.5 1.1 1.1e-09 37.9 0.6 1.4 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|435850868|ref|YP_007312454.1| - 0.00027 20.4 0.7 0.00027 20.4 0.5 1.7 1 1 1 2 2 2 1 tRNA_anti-like DUF4131 PF13567.1 gi|435850868|ref|YP_007312454.1| - 0.018 14.4 0.1 0.029 13.7 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) FKBP_C PF00254.23 gi|435850869|ref|YP_007312455.1| - 6.4e-22 77.3 0.0 1.1e-21 76.5 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase PAP2 PF01569.16 gi|435850870|ref|YP_007312456.1| - 3.4e-12 46.1 8.8 3.4e-12 46.1 6.1 2.4 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|435850870|ref|YP_007312456.1| - 0.002 17.6 11.8 0.002 17.6 8.2 2.0 2 1 0 2 2 2 1 PAP2 superfamily FIVAR PF07554.8 gi|435850871|ref|YP_007312457.1| - 1e-06 28.7 22.9 0.0021 18.2 0.8 4.5 2 2 2 4 4 4 2 Uncharacterised Sugar-binding Domain fn3 PF00041.16 gi|435850871|ref|YP_007312457.1| - 0.00015 21.8 22.2 0.068 13.3 1.9 5.4 4 2 0 4 4 4 3 Fibronectin type III domain DUF2846 PF11008.3 gi|435850871|ref|YP_007312457.1| - 0.043 13.6 0.1 0.38 10.5 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2846) Phage_integrase PF00589.17 gi|435850872|ref|YP_007312458.1| - 1.8e-22 79.8 0.0 3.7e-22 78.7 0.0 1.6 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|435850872|ref|YP_007312458.1| - 4.7e-08 33.2 0.1 1e-07 32.1 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|435850872|ref|YP_007312458.1| - 1.9e-05 24.7 0.1 6.4e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.1 gi|435850872|ref|YP_007312458.1| - 7.9e-05 21.7 1.3 0.00016 20.7 0.9 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|435850872|ref|YP_007312458.1| - 0.0019 17.9 1.2 0.0042 16.8 0.8 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-AD PF07776.10 gi|435850872|ref|YP_007312458.1| - 0.003 17.4 1.1 0.0071 16.3 0.7 1.6 1 0 0 1 1 1 1 Zinc-finger associated domain (zf-AD) zf-FPG_IleRS PF06827.9 gi|435850872|ref|YP_007312458.1| - 0.013 15.0 1.7 0.038 13.6 1.2 1.9 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.1 gi|435850872|ref|YP_007312458.1| - 0.024 14.1 3.3 0.024 14.1 2.3 1.7 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|435850872|ref|YP_007312458.1| - 0.064 12.9 3.7 0.13 12.0 2.6 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Cript PF10235.4 gi|435850872|ref|YP_007312458.1| - 0.11 12.9 1.1 0.21 11.9 0.8 1.4 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT Acetyltransf_7 PF13508.1 gi|435850873|ref|YP_007312459.1| - 2.7e-10 40.2 0.0 4.2e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|435850873|ref|YP_007312459.1| - 0.00019 21.3 0.0 0.00027 20.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|435850873|ref|YP_007312459.1| - 0.0062 16.6 0.0 0.012 15.7 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain ECIST_Cterm PF14784.1 gi|435850873|ref|YP_007312459.1| - 0.052 13.4 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 C-terminal domain of the ECSIT protein DUF2129 PF09902.4 gi|435850873|ref|YP_007312459.1| - 0.073 12.8 0.2 0.55 10.0 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2129) PaaSYMP PF14738.1 gi|435850874|ref|YP_007312460.1| - 0.054 13.2 0.0 0.057 13.1 0.0 1.1 1 0 0 1 1 1 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 PT-TG PF14449.1 gi|435850874|ref|YP_007312460.1| - 0.06 13.1 0.0 0.062 13.0 0.0 1.1 1 0 0 1 1 1 0 Pre-toxin TG UPF0697 PF15117.1 gi|435850874|ref|YP_007312460.1| - 0.13 12.0 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0697 TACC PF05010.9 gi|435850875|ref|YP_007312461.1| - 0.0014 18.4 2.5 0.0015 18.3 1.7 1.1 1 0 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC) Matrilin_ccoil PF10393.4 gi|435850875|ref|YP_007312461.1| - 0.0058 15.9 0.9 0.014 14.7 0.5 1.8 1 1 1 2 2 2 1 Trimeric coiled-coil oligomerisation domain of matrilin DUF4600 PF15372.1 gi|435850875|ref|YP_007312461.1| - 0.0073 16.5 2.7 0.009 16.2 1.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4600) Lipoprotein_6 PF01441.14 gi|435850875|ref|YP_007312461.1| - 0.0081 16.0 0.7 0.0089 15.8 0.5 1.2 1 0 0 1 1 1 1 Lipoprotein Lebercilin PF15619.1 gi|435850875|ref|YP_007312461.1| - 0.0094 15.3 3.7 0.011 15.1 2.5 1.3 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease DMPK_coil PF08826.5 gi|435850875|ref|YP_007312461.1| - 0.014 15.2 4.3 0.014 15.2 3.0 1.5 2 0 0 2 2 2 0 DMPK coiled coil domain like Halo_GVPC PF05465.8 gi|435850875|ref|YP_007312461.1| - 0.027 14.4 0.1 0.051 13.5 0.1 1.5 1 0 0 1 1 1 0 Halobacterial gas vesicle protein C (GVPC) repeat DUF4174 PF13778.1 gi|435850875|ref|YP_007312461.1| - 0.03 14.4 1.0 0.036 14.1 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4174) RHH_1 PF01402.16 gi|435850875|ref|YP_007312461.1| - 0.037 13.9 0.9 0.71 9.8 0.0 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF2721 PF11026.3 gi|435850875|ref|YP_007312461.1| - 0.038 13.6 0.4 0.051 13.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF16 PF01519.11 gi|435850875|ref|YP_007312461.1| - 0.11 12.7 4.0 0.13 12.4 2.6 1.3 1 1 0 1 1 1 0 Protein of unknown function DUF16 XhlA PF10779.4 gi|435850875|ref|YP_007312461.1| - 0.13 12.1 3.7 0.24 11.3 2.6 1.4 1 0 0 1 1 1 0 Haemolysin XhlA DUF724 PF05266.9 gi|435850875|ref|YP_007312461.1| - 0.15 11.6 3.9 0.17 11.5 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Bap31 PF05529.7 gi|435850875|ref|YP_007312461.1| - 0.38 10.1 2.7 0.48 9.8 1.9 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF4446 PF14584.1 gi|435850875|ref|YP_007312461.1| - 0.67 9.7 3.9 0.99 9.2 2.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) DivIC PF04977.10 gi|435850875|ref|YP_007312461.1| - 0.69 9.4 4.6 0.3 10.6 1.7 1.5 2 0 0 2 2 2 0 Septum formation initiator SseC PF04888.7 gi|435850875|ref|YP_007312461.1| - 7.2 5.8 6.9 8.4 5.6 4.6 1.2 1 1 0 1 1 1 0 Secretion system effector C (SseC) like family Antitoxin-MazE PF04014.13 gi|435850876|ref|YP_007312462.1| - 1.7e-05 24.4 0.0 2.1e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DsbC_N PF10411.4 gi|435850878|ref|YP_007312464.1| - 0.081 12.1 0.0 5.1 6.4 0.0 2.2 2 0 0 2 2 2 0 Disulfide bond isomerase protein N-terminus DUF3753 PF12575.3 gi|435850879|ref|YP_007312465.1| - 0.19 11.5 2.0 0.18 11.6 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3753) zf-CHC2 PF01807.15 gi|435850882|ref|YP_007312468.1| - 1.2e-09 37.5 0.0 2.7e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 CHC2 zinc finger Toprim_N PF08275.6 gi|435850882|ref|YP_007312468.1| - 6.4e-09 35.8 0.0 1.1e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 DNA primase catalytic core, N-terminal domain Toprim_3 PF13362.1 gi|435850882|ref|YP_007312468.1| - 9.9e-05 22.5 0.0 0.00017 21.7 0.0 1.4 1 0 0 1 1 1 1 Toprim domain Endonuc-dimeris PF09124.5 gi|435850882|ref|YP_007312468.1| - 5.2 6.7 5.9 6.5 6.4 0.0 3.5 4 0 0 4 4 4 0 T4 recombination endonuclease VII, dimerisation D5_N PF08706.6 gi|435850883|ref|YP_007312469.1| - 3.3e-09 36.9 0.2 1.6e-08 34.7 0.0 2.3 2 0 0 2 2 2 1 D5 N terminal like Pox_D5 PF03288.11 gi|435850883|ref|YP_007312469.1| - 0.00069 19.8 0.0 0.0022 18.2 0.0 1.9 1 0 0 1 1 1 1 Poxvirus D5 protein-like ABC_tran PF00005.22 gi|435850883|ref|YP_007312469.1| - 0.14 12.4 0.1 0.54 10.5 0.1 1.9 1 1 0 1 1 1 0 ABC transporter PAZ_siRNAbind PF12212.3 gi|435850884|ref|YP_007312470.1| - 0.28 10.8 2.5 6 6.5 0.2 2.5 2 1 0 2 2 2 0 Piwi/Argonaute/Zwille siRNA-binding domain HSDR_N PF04313.9 gi|435850886|ref|YP_007312472.1| - 4.4e-11 42.8 0.0 2.8e-08 33.7 0.0 2.2 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.1 gi|435850886|ref|YP_007312472.1| - 1.1e-05 25.1 0.0 2.8e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) LTD PF00932.14 gi|435850887|ref|YP_007312473.1| - 6.9e-17 61.5 4.0 6.9e-17 61.5 2.8 3.8 4 2 0 4 4 4 1 Lamin Tail Domain VCBS PF13517.1 gi|435850887|ref|YP_007312473.1| - 8.5e-07 29.2 56.2 0.00014 22.0 7.7 6.5 2 2 5 7 7 7 6 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|435850887|ref|YP_007312473.1| - 1.3e-05 24.6 38.8 0.062 13.0 0.5 6.2 6 0 0 6 6 6 5 FG-GAP repeat Ribosomal_S16 PF00886.14 gi|435850887|ref|YP_007312473.1| - 0.031 13.9 0.2 19 5.0 0.0 3.1 3 0 0 3 3 3 0 Ribosomal protein S16 LTD PF00932.14 gi|435850888|ref|YP_007312474.1| - 8.2e-25 87.1 3.3 8.2e-25 87.1 2.3 3.5 2 1 2 4 4 4 1 Lamin Tail Domain Lactamase_B PF00753.22 gi|435850888|ref|YP_007312474.1| - 2.1e-13 50.3 0.2 5.2e-13 49.0 0.1 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|435850888|ref|YP_007312474.1| - 2.7e-07 30.4 0.1 8e-07 28.9 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|435850888|ref|YP_007312474.1| - 6e-06 25.9 0.0 1.5e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain VCBS PF13517.1 gi|435850888|ref|YP_007312474.1| - 5.5e-05 23.4 43.8 0.0026 18.0 5.6 6.7 4 1 2 6 6 6 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|435850888|ref|YP_007312474.1| - 0.0064 16.1 19.4 1.5 8.6 0.0 5.4 5 0 0 5 5 5 3 FG-GAP repeat HTH_23 PF13384.1 gi|435850889|ref|YP_007312475.1| - 3.1e-07 29.8 0.0 6.4e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|435850889|ref|YP_007312475.1| - 0.00016 21.4 0.0 0.00036 20.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|435850889|ref|YP_007312475.1| - 0.00039 19.9 0.0 0.0012 18.4 0.0 1.8 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|435850889|ref|YP_007312475.1| - 0.00063 19.0 0.3 0.0027 16.9 0.0 2.0 1 1 1 2 2 2 1 Sigma-70, region 4 HTH_29 PF13551.1 gi|435850889|ref|YP_007312475.1| - 0.0012 18.9 0.2 0.026 14.6 0.0 2.2 1 1 1 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|435850889|ref|YP_007312475.1| - 0.0013 18.6 0.1 0.0028 17.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|435850889|ref|YP_007312475.1| - 0.0017 17.8 0.3 0.0089 15.4 0.0 2.1 1 1 1 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|435850889|ref|YP_007312475.1| - 0.0019 17.7 0.0 0.0038 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|435850889|ref|YP_007312475.1| - 0.004 16.8 0.8 0.49 10.1 0.0 3.3 4 0 0 4 4 4 1 MarR family HTH_17 PF12728.2 gi|435850889|ref|YP_007312475.1| - 0.004 17.3 0.0 0.0091 16.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_2 PF13591.1 gi|435850889|ref|YP_007312475.1| - 0.018 14.6 0.1 0.032 13.8 0.1 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_31 PF13560.1 gi|435850889|ref|YP_007312475.1| - 0.025 14.7 0.5 0.074 13.2 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|435850889|ref|YP_007312475.1| - 0.028 14.2 0.1 0.094 12.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix HTH_IclR PF09339.5 gi|435850889|ref|YP_007312475.1| - 0.028 13.9 0.0 0.068 12.7 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|435850889|ref|YP_007312475.1| - 0.053 13.2 0.0 0.12 12.0 0.0 1.7 1 1 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|435850889|ref|YP_007312475.1| - 0.073 12.8 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|435850889|ref|YP_007312475.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like TrmB PF01978.14 gi|435850890|ref|YP_007312476.1| - 0.022 14.4 0.0 0.043 13.5 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|435850890|ref|YP_007312476.1| - 0.043 13.3 0.2 0.053 13.0 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.17 gi|435850890|ref|YP_007312476.1| - 0.065 12.9 0.1 0.25 11.0 0.0 1.9 2 1 0 2 2 2 0 MarR family MarR_2 PF12802.2 gi|435850890|ref|YP_007312476.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family Peptidase_M42 PF05343.9 gi|435850890|ref|YP_007312476.1| - 0.14 10.9 0.0 0.16 10.6 0.0 1.1 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase Aconitase PF00330.15 gi|435850891|ref|YP_007312477.1| - 1.9e-90 303.5 1.9 3.3e-62 210.5 0.1 2.3 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|435850891|ref|YP_007312477.1| - 0.03 12.8 0.0 0.052 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF521) SprT-like PF10263.4 gi|435850892|ref|YP_007312478.1| - 0.058 13.0 0.3 0.074 12.6 0.2 1.2 1 0 0 1 1 1 0 SprT-like family UvrD_C PF13361.1 gi|435850892|ref|YP_007312478.1| - 0.063 12.7 0.1 0.066 12.6 0.1 1.0 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain Seryl_tRNA_N PF02403.17 gi|435850892|ref|YP_007312478.1| - 0.066 13.2 0.6 0.088 12.8 0.4 1.2 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DDE_Tnp_ISL3 PF01610.12 gi|435850892|ref|YP_007312478.1| - 0.074 12.6 0.3 0.077 12.5 0.2 1.0 1 0 0 1 1 1 0 Transposase HMG-CoA_red PF00368.13 gi|435850893|ref|YP_007312479.1| - 1.2e-146 488.1 2.9 1.4e-146 487.9 2.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DrsE PF02635.10 gi|435850894|ref|YP_007312480.1| - 1.4e-08 34.8 0.0 1.6e-08 34.6 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|435850894|ref|YP_007312480.1| - 1.5e-06 28.0 0.0 1.5e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family KaiC PF06745.8 gi|435850895|ref|YP_007312481.1| - 4.8e-49 166.5 1.9 5.5e-49 166.3 1.4 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|435850895|ref|YP_007312481.1| - 5.7e-10 38.1 0.2 7.1e-10 37.8 0.1 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|435850895|ref|YP_007312481.1| - 5.7e-06 25.8 0.0 9.2e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|435850895|ref|YP_007312481.1| - 0.0011 19.1 0.7 0.0044 17.2 0.5 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DnaB_C PF03796.10 gi|435850895|ref|YP_007312481.1| - 0.0013 17.6 0.0 0.0024 16.8 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|435850895|ref|YP_007312481.1| - 0.024 14.7 0.0 0.039 14.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|435850895|ref|YP_007312481.1| - 0.025 13.5 0.1 0.035 13.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF3542 PF12061.3 gi|435850895|ref|YP_007312481.1| - 0.048 12.6 0.0 0.055 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3542) Zot PF05707.7 gi|435850895|ref|YP_007312481.1| - 0.076 12.4 0.2 0.52 9.7 0.1 2.0 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) Rad51 PF08423.6 gi|435850895|ref|YP_007312481.1| - 0.1 11.4 2.3 0.29 10.0 0.2 2.2 2 1 0 2 2 2 0 Rad51 IstB_IS21 PF01695.12 gi|435850895|ref|YP_007312481.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Fzo_mitofusin PF04799.8 gi|435850896|ref|YP_007312482.1| - 0.11 11.8 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 fzo-like conserved region TrmB PF01978.14 gi|435850897|ref|YP_007312483.1| - 6.2e-16 57.8 0.2 8.5e-16 57.4 0.2 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|435850897|ref|YP_007312483.1| - 0.00023 20.6 0.2 0.00038 19.9 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|435850897|ref|YP_007312483.1| - 0.0005 19.6 0.0 0.00075 19.1 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|435850897|ref|YP_007312483.1| - 0.00087 18.9 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|435850897|ref|YP_007312483.1| - 0.0012 18.5 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|435850897|ref|YP_007312483.1| - 0.011 15.4 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.1 gi|435850897|ref|YP_007312483.1| - 0.014 15.2 0.1 0.029 14.1 0.1 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|435850897|ref|YP_007312483.1| - 0.027 14.7 0.0 0.041 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|435850897|ref|YP_007312483.1| - 0.035 13.6 0.1 0.045 13.2 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_5 PF01022.15 gi|435850897|ref|YP_007312483.1| - 0.037 13.7 0.1 0.072 12.7 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|435850897|ref|YP_007312483.1| - 0.057 12.9 0.0 0.42 10.2 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain OrfB_IS605 PF01385.14 gi|435850898|ref|YP_007312484.1| - 2.7e-45 154.5 6.5 2.7e-45 154.5 4.5 1.5 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|435850898|ref|YP_007312484.1| - 1.7e-21 75.2 1.5 3.6e-21 74.2 1.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|435850898|ref|YP_007312484.1| - 9.7e-19 66.8 0.4 2e-18 65.7 0.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF2296 PF10058.4 gi|435850898|ref|YP_007312484.1| - 0.026 14.2 0.5 0.053 13.2 0.3 1.5 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) DUF4428 PF14471.1 gi|435850898|ref|YP_007312484.1| - 0.033 13.9 1.5 0.033 13.9 1.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Nepo_coat_C PF03688.9 gi|435850898|ref|YP_007312484.1| - 0.034 13.7 0.1 1.6 8.3 0.0 2.8 3 0 0 3 3 3 0 Nepovirus coat protein, C-terminal domain zf-piccolo PF05715.8 gi|435850898|ref|YP_007312484.1| - 0.11 12.5 0.4 0.26 11.3 0.3 1.6 1 0 0 1 1 1 0 Piccolo Zn-finger HypA PF01155.14 gi|435850898|ref|YP_007312484.1| - 0.12 12.0 0.2 0.26 10.9 0.1 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|435850898|ref|YP_007312484.1| - 4 7.3 9.0 1.3e+02 2.5 6.2 2.6 1 1 0 1 1 1 0 Rubredoxin Aminotran_1_2 PF00155.16 gi|435850899|ref|YP_007312485.1| - 3.6e-65 220.2 0.0 4.1e-65 220.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|435850899|ref|YP_007312485.1| - 3.7e-15 55.8 0.0 5.3e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|435850899|ref|YP_007312485.1| - 9.2e-10 37.7 0.0 1.3e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|435850899|ref|YP_007312485.1| - 2.3e-08 32.7 0.0 3.3e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|435850899|ref|YP_007312485.1| - 2e-07 30.4 0.0 3e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Alliinase_C PF04864.8 gi|435850899|ref|YP_007312485.1| - 0.00045 18.9 0.0 0.0045 15.6 0.0 1.9 2 0 0 2 2 2 1 Allinase OKR_DC_1 PF01276.15 gi|435850899|ref|YP_007312485.1| - 0.0027 16.3 0.0 0.0037 15.8 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain CP_ATPgrasp_2 PF14403.1 gi|435850899|ref|YP_007312485.1| - 0.081 11.5 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Circularly permuted ATP-grasp type 2 Aminotran_3 PF00202.16 gi|435850899|ref|YP_007312485.1| - 0.13 11.1 0.0 0.87 8.3 0.0 2.0 1 1 1 2 2 2 0 Aminotransferase class-III AsnC_trans_reg PF01037.16 gi|435850900|ref|YP_007312486.1| - 1e-14 53.9 0.2 2e-14 53.0 0.1 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|435850900|ref|YP_007312486.1| - 2.5e-12 45.9 0.0 9.9e-12 44.0 0.0 2.0 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|435850900|ref|YP_007312486.1| - 3.3e-07 29.7 0.0 1.3e-06 27.8 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|435850900|ref|YP_007312486.1| - 3.6e-05 23.4 0.0 6.9e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|435850900|ref|YP_007312486.1| - 8.2e-05 22.3 0.1 0.00045 19.9 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|435850900|ref|YP_007312486.1| - 0.00029 20.2 0.2 0.00063 19.2 0.1 1.6 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|435850900|ref|YP_007312486.1| - 0.00031 20.3 0.0 0.00063 19.3 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|435850900|ref|YP_007312486.1| - 0.0009 18.8 0.0 0.0019 17.8 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF1670 PF07900.6 gi|435850900|ref|YP_007312486.1| - 0.0027 16.9 0.2 0.0042 16.3 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1670) DUF2250 PF10007.4 gi|435850900|ref|YP_007312486.1| - 0.045 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|435850900|ref|YP_007312486.1| - 0.049 13.2 0.0 0.13 11.9 0.0 1.8 1 1 0 1 1 1 0 HTH domain Phage_rep_org_N PF09681.5 gi|435850900|ref|YP_007312486.1| - 0.059 12.9 0.1 3 7.4 0.0 2.2 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) Acyl_transf_2 PF02273.10 gi|435850900|ref|YP_007312486.1| - 0.059 12.3 0.0 0.08 11.9 0.0 1.2 1 0 0 1 1 1 0 Acyl transferase TrmB PF01978.14 gi|435850900|ref|YP_007312486.1| - 0.061 13.0 0.1 0.43 10.3 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|435850900|ref|YP_007312486.1| - 0.073 13.1 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|435850900|ref|YP_007312486.1| - 0.086 12.9 0.1 0.77 9.9 0.0 2.4 2 1 0 3 3 3 0 Transcriptional regulator RPA_C PF08784.6 gi|435850900|ref|YP_007312486.1| - 0.093 13.1 0.1 0.33 11.3 0.0 1.9 3 0 0 3 3 3 0 Replication protein A C terminal Phage_rep_O PF04492.8 gi|435850900|ref|YP_007312486.1| - 0.1 12.8 0.2 1.5 9.0 0.0 2.1 2 0 0 2 2 2 0 Bacteriophage replication protein O Rio2_N PF09202.6 gi|435850900|ref|YP_007312486.1| - 0.1 12.6 0.1 4.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Rio2, N-terminal Ribosomal_S8e PF01201.17 gi|435850901|ref|YP_007312487.1| - 1.5e-36 125.4 3.7 1.6e-36 125.3 2.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF4216 PF13952.1 gi|435850901|ref|YP_007312487.1| - 0.06 12.8 0.1 0.087 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4216) Lactamase_B_2 PF12706.2 gi|435850902|ref|YP_007312488.1| - 2.8e-32 111.8 0.0 3.7e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|435850902|ref|YP_007312488.1| - 2.4e-17 63.2 0.0 1.2e-16 60.9 0.0 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|435850902|ref|YP_007312488.1| - 0.00022 20.6 0.0 0.00045 19.6 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease DUF3601 PF12208.3 gi|435850903|ref|YP_007312489.1| - 0.0071 16.2 0.0 0.0088 15.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3601) AAA PF00004.24 gi|435850904|ref|YP_007312490.1| - 4.1e-38 130.5 0.0 7.1e-38 129.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|435850904|ref|YP_007312490.1| - 3.1e-08 34.4 0.1 1.4e-07 32.3 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|435850904|ref|YP_007312490.1| - 1.1e-07 31.9 0.1 3e-07 30.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|435850904|ref|YP_007312490.1| - 2.6e-07 29.9 0.0 5e-06 25.7 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|435850904|ref|YP_007312490.1| - 5.1e-06 26.6 0.4 0.00048 20.2 0.0 2.5 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.8 gi|435850904|ref|YP_007312490.1| - 1.2e-05 24.2 0.0 2.3e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|435850904|ref|YP_007312490.1| - 2.3e-05 23.9 0.0 3.8e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|435850904|ref|YP_007312490.1| - 3.1e-05 23.7 0.0 0.00021 20.9 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|435850904|ref|YP_007312490.1| - 4.2e-05 23.5 0.0 7.7e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|435850904|ref|YP_007312490.1| - 0.00027 21.0 0.3 0.0055 16.7 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain DUF815 PF05673.8 gi|435850904|ref|YP_007312490.1| - 0.00027 19.9 0.0 0.00074 18.5 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|435850904|ref|YP_007312490.1| - 0.00052 20.3 0.0 0.0036 17.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|435850904|ref|YP_007312490.1| - 0.00096 19.0 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|435850904|ref|YP_007312490.1| - 0.0011 18.1 0.1 0.0028 16.8 0.1 1.6 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI Bac_DnaA PF00308.13 gi|435850904|ref|YP_007312490.1| - 0.002 17.8 0.0 0.0033 17.0 0.0 1.4 1 1 0 1 1 1 1 Bacterial dnaA protein Sigma54_activat PF00158.21 gi|435850904|ref|YP_007312490.1| - 0.007 15.8 0.0 0.017 14.6 0.0 1.7 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|435850904|ref|YP_007312490.1| - 0.0079 15.6 2.7 0.14 11.5 0.1 2.2 1 1 1 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|435850904|ref|YP_007312490.1| - 0.0091 16.1 0.0 0.032 14.3 0.0 1.9 2 0 0 2 2 2 1 RNA helicase PhoH PF02562.11 gi|435850904|ref|YP_007312490.1| - 0.015 14.4 0.0 0.028 13.6 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein NACHT PF05729.7 gi|435850904|ref|YP_007312490.1| - 0.02 14.5 0.1 0.048 13.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain PduV-EutP PF10662.4 gi|435850904|ref|YP_007312490.1| - 0.025 14.0 0.0 0.062 12.7 0.0 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation IPT PF01745.11 gi|435850904|ref|YP_007312490.1| - 0.026 13.7 0.0 0.041 13.0 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase AAA_10 PF12846.2 gi|435850904|ref|YP_007312490.1| - 0.031 13.7 1.2 0.1 11.9 0.1 2.2 3 0 0 3 3 2 0 AAA-like domain AAA_24 PF13479.1 gi|435850904|ref|YP_007312490.1| - 0.033 13.7 0.0 0.061 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|435850904|ref|YP_007312490.1| - 0.034 13.0 0.0 0.063 12.1 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF258 PF03193.11 gi|435850904|ref|YP_007312490.1| - 0.044 12.9 0.0 0.077 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|435850904|ref|YP_007312490.1| - 0.047 12.5 0.0 0.082 11.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|435850904|ref|YP_007312490.1| - 0.053 13.8 0.0 0.17 12.1 0.0 1.8 2 0 0 2 2 1 0 ABC transporter Sigma54_activ_2 PF14532.1 gi|435850904|ref|YP_007312490.1| - 0.06 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain PEPCK_ATP PF01293.15 gi|435850904|ref|YP_007312490.1| - 0.062 11.8 0.0 0.093 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase ATP-synt_ab PF00006.20 gi|435850904|ref|YP_007312490.1| - 0.064 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_14 PF13173.1 gi|435850904|ref|YP_007312490.1| - 0.071 13.0 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain GATase_7 PF13537.1 gi|435850905|ref|YP_007312491.1| - 7.6e-25 87.0 0.0 1.3e-24 86.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|435850905|ref|YP_007312491.1| - 4e-24 85.0 0.0 8.5e-24 84.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|435850905|ref|YP_007312491.1| - 4.8e-23 81.4 0.0 4.2e-16 58.6 0.0 3.0 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|435850905|ref|YP_007312491.1| - 3.7e-11 42.8 0.7 7.7e-11 41.8 0.2 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|435850905|ref|YP_007312491.1| - 2.9e-08 32.7 0.0 4.4e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II PRTase_2 PF15609.1 gi|435850905|ref|YP_007312491.1| - 0.12 11.7 0.1 0.48 9.7 0.0 1.9 2 0 0 2 2 2 0 Phosphoribosyl transferase Ribosomal_L37e PF01907.14 gi|435850906|ref|YP_007312492.1| - 4e-23 80.9 11.7 4.3e-23 80.8 8.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|435850906|ref|YP_007312492.1| - 0.0072 16.1 1.6 0.011 15.5 1.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-piccolo PF05715.8 gi|435850906|ref|YP_007312492.1| - 0.027 14.4 1.8 0.063 13.2 1.3 1.6 1 1 0 1 1 1 0 Piccolo Zn-finger zf-ribbon_3 PF13248.1 gi|435850906|ref|YP_007312492.1| - 0.073 12.2 4.6 0.067 12.4 1.9 1.9 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|435850906|ref|YP_007312492.1| - 0.078 12.4 2.6 0.071 12.6 1.8 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain HypA PF01155.14 gi|435850906|ref|YP_007312492.1| - 0.19 11.4 1.0 0.21 11.2 0.7 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|435850906|ref|YP_007312492.1| - 0.29 10.4 2.0 1.7 8.0 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|435850906|ref|YP_007312492.1| - 0.38 10.2 3.6 1.3 8.6 2.5 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2_3 PF13878.1 gi|435850906|ref|YP_007312492.1| - 0.56 9.8 4.5 4.6 6.8 0.4 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DNA_RNApol_7kD PF03604.8 gi|435850906|ref|YP_007312492.1| - 0.79 9.2 6.8 1.8 8.0 0.6 2.3 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit MraY_sig1 PF10555.4 gi|435850906|ref|YP_007312492.1| - 0.81 9.1 3.9 0.74 9.2 0.6 2.1 2 0 0 2 2 2 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RRN7 PF11781.3 gi|435850906|ref|YP_007312492.1| - 0.87 9.1 3.9 3.1 7.3 0.2 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn-ribbon_8 PF09723.5 gi|435850906|ref|YP_007312492.1| - 1 9.3 5.1 5.8 6.9 0.1 2.2 1 1 2 3 3 3 0 Zinc ribbon domain YhfH PF14149.1 gi|435850906|ref|YP_007312492.1| - 1.2 8.9 5.9 0.92 9.3 0.4 2.3 1 1 1 2 2 2 0 YhfH-like protein OrfB_Zn_ribbon PF07282.6 gi|435850906|ref|YP_007312492.1| - 3.3 7.4 7.3 1.7 8.3 3.8 1.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|435850906|ref|YP_007312492.1| - 7.7 6.4 9.2 32 4.4 6.3 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|435850906|ref|YP_007312492.1| - 9.5 6.0 7.4 11 5.7 1.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain LSM PF01423.17 gi|435850907|ref|YP_007312493.1| - 3.8e-22 77.6 0.2 4.1e-22 77.4 0.1 1.0 1 0 0 1 1 1 1 LSM domain Phos_pyr_kin PF08543.7 gi|435850908|ref|YP_007312494.1| - 5.2e-82 274.7 3.9 5.2e-82 274.7 1.8 1.6 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|435850908|ref|YP_007312494.1| - 2.9e-54 183.0 0.4 4.8e-54 182.2 0.3 1.3 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|435850908|ref|YP_007312494.1| - 1.6e-10 40.5 0.5 2.5e-10 39.9 0.3 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.10 gi|435850908|ref|YP_007312494.1| - 0.00044 19.4 1.5 0.00044 19.4 1.1 1.7 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|435850908|ref|YP_007312494.1| - 0.0025 17.1 0.6 0.0036 16.6 0.4 1.4 1 1 0 1 1 1 1 Carbohydrate kinase Methyltrn_RNA_2 PF04013.7 gi|435850909|ref|YP_007312495.1| - 3.7e-61 206.1 0.0 4.1e-61 206.0 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase THUMP PF02926.12 gi|435850910|ref|YP_007312496.1| - 1.9e-11 44.0 0.0 3.8e-11 43.0 0.0 1.6 1 0 0 1 1 1 1 THUMP domain Fusion_gly PF00523.13 gi|435850910|ref|YP_007312496.1| - 0.11 10.5 0.0 0.16 9.9 0.0 1.2 1 0 0 1 1 1 0 Fusion glycoprotein F0 Ribosomal_L21e PF01157.13 gi|435850911|ref|YP_007312497.1| - 1.5e-28 98.4 0.4 1.6e-28 98.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|435850912|ref|YP_007312498.1| - 1.7e-16 60.2 3.0 2e-16 60.0 2.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 7TMR-HDED PF07697.6 gi|435850912|ref|YP_007312498.1| - 0.016 14.9 0.4 0.025 14.3 0.3 1.3 1 0 0 1 1 1 0 7TM-HD extracellular HEM4 PF02602.10 gi|435850912|ref|YP_007312498.1| - 0.12 11.5 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD SelB-wing_2 PF09106.6 gi|435850912|ref|YP_007312498.1| - 0.14 12.1 0.8 0.39 10.6 0.1 2.0 2 0 0 2 2 2 0 Elongation factor SelB, winged helix Rep_fac_C PF08542.6 gi|435850912|ref|YP_007312498.1| - 0.14 12.1 0.7 0.4 10.6 0.5 1.9 1 1 0 1 1 1 0 Replication factor C C-terminal domain FliG_M PF14841.1 gi|435850912|ref|YP_007312498.1| - 0.16 11.9 2.4 0.39 10.7 0.2 2.2 2 0 0 2 2 2 0 FliG middle domain EF-hand_8 PF13833.1 gi|435850912|ref|YP_007312498.1| - 0.21 11.2 2.1 0.64 9.6 0.1 2.4 3 0 0 3 3 3 0 EF-hand domain pair DUF1515 PF07439.6 gi|435850912|ref|YP_007312498.1| - 0.25 11.1 1.1 0.35 10.7 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) DUF655 PF04919.7 gi|435850913|ref|YP_007312499.1| - 4e-65 218.9 0.0 4.5e-65 218.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|435850913|ref|YP_007312499.1| - 0.00094 19.0 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|435850913|ref|YP_007312499.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif RrnaAD PF00398.15 gi|435850914|ref|YP_007312500.1| - 5.2e-60 202.6 0.0 6.8e-60 202.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|435850914|ref|YP_007312500.1| - 1.5e-10 41.1 0.0 2e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435850914|ref|YP_007312500.1| - 3.4e-08 34.0 0.0 5.5e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|435850914|ref|YP_007312500.1| - 2.6e-06 27.1 0.4 4e-06 26.5 0.0 1.5 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|435850914|ref|YP_007312500.1| - 1e-05 25.1 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435850914|ref|YP_007312500.1| - 0.00017 20.9 0.0 0.00027 20.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|435850914|ref|YP_007312500.1| - 0.00034 21.0 0.0 0.00061 20.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435850914|ref|YP_007312500.1| - 0.00063 20.0 0.0 0.0012 19.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|435850914|ref|YP_007312500.1| - 0.0065 16.0 0.1 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|435850914|ref|YP_007312500.1| - 0.011 16.1 0.0 0.02 15.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|435850914|ref|YP_007312500.1| - 0.071 12.4 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_PK PF05891.7 gi|435850914|ref|YP_007312500.1| - 0.12 11.6 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase CMAS PF02353.15 gi|435850914|ref|YP_007312500.1| - 0.15 11.0 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|435850915|ref|YP_007312501.1| - 2.6e-11 43.5 0.0 4.4e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435850915|ref|YP_007312501.1| - 3e-10 39.7 0.0 4.2e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|435850915|ref|YP_007312501.1| - 3e-09 36.6 0.0 3.7e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435850915|ref|YP_007312501.1| - 7.5e-05 23.2 0.0 0.00014 22.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0146 PF03686.8 gi|435850915|ref|YP_007312501.1| - 0.0002 21.1 0.1 0.00053 19.8 0.0 1.7 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0146) PCMT PF01135.14 gi|435850915|ref|YP_007312501.1| - 0.00033 20.2 0.0 0.00045 19.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.1 gi|435850915|ref|YP_007312501.1| - 0.00056 19.6 0.0 0.0008 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|435850915|ref|YP_007312501.1| - 0.0019 17.3 0.1 0.0022 17.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|435850915|ref|YP_007312501.1| - 0.0025 17.2 0.0 0.0055 16.0 0.0 1.5 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.7 gi|435850915|ref|YP_007312501.1| - 0.0072 16.7 0.0 0.012 16.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|435850915|ref|YP_007312501.1| - 0.013 14.9 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_11 PF08241.7 gi|435850915|ref|YP_007312501.1| - 0.016 15.6 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TPP_enzyme_C PF02775.16 gi|435850916|ref|YP_007312502.1| - 2.1e-29 102.0 0.1 2.9e-29 101.6 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|435850916|ref|YP_007312502.1| - 8.2e-24 83.3 0.0 1.7e-23 82.3 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|435850917|ref|YP_007312503.1| - 1.4e-60 204.6 0.2 2e-60 204.1 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|435850917|ref|YP_007312503.1| - 3.6e-37 127.9 0.1 6.8e-37 127.0 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|435850917|ref|YP_007312503.1| - 4.8e-05 23.2 0.0 0.00011 22.0 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|435850917|ref|YP_007312503.1| - 0.00018 21.0 0.5 0.00029 20.3 0.4 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KaiC PF06745.8 gi|435850918|ref|YP_007312504.1| - 1.7e-44 151.6 0.1 4e-44 150.4 0.1 1.6 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|435850918|ref|YP_007312504.1| - 4.6e-06 26.1 0.1 1.3e-05 24.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|435850918|ref|YP_007312504.1| - 6.7e-05 22.0 0.0 9.9e-05 21.5 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|435850918|ref|YP_007312504.1| - 8.7e-05 21.0 0.0 0.00017 20.0 0.0 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein DUF2075 PF09848.4 gi|435850918|ref|YP_007312504.1| - 0.00047 19.2 0.0 0.0007 18.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|435850918|ref|YP_007312504.1| - 0.0008 18.8 0.3 0.0028 17.1 0.0 1.9 2 1 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|435850918|ref|YP_007312504.1| - 0.0013 17.7 0.0 0.0026 16.6 0.0 1.5 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_19 PF13245.1 gi|435850918|ref|YP_007312504.1| - 0.0041 16.8 0.0 0.009 15.7 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain NTPase_1 PF03266.10 gi|435850918|ref|YP_007312504.1| - 0.019 14.6 0.3 2.8 7.6 0.0 2.2 2 0 0 2 2 2 0 NTPase Sigma54_activat PF00158.21 gi|435850918|ref|YP_007312504.1| - 0.027 13.9 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.1 gi|435850918|ref|YP_007312504.1| - 0.029 14.5 0.1 0.24 11.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|435850918|ref|YP_007312504.1| - 0.15 12.0 1.2 0.63 10.0 0.8 1.9 1 1 0 1 1 1 0 AAA ATPase domain AIRC PF00731.15 gi|435850919|ref|YP_007312505.1| - 3e-43 146.6 3.9 3.3e-43 146.5 2.7 1.0 1 0 0 1 1 1 1 AIR carboxylase CM_2 PF01817.16 gi|435850920|ref|YP_007312506.1| - 1.1e-18 67.1 3.6 1.2e-18 66.9 2.5 1.0 1 0 0 1 1 1 1 Chorismate mutase type II GHMP_kinases_N PF00288.21 gi|435850921|ref|YP_007312507.1| - 2.2e-12 46.8 1.8 4.9e-12 45.7 1.2 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|435850921|ref|YP_007312507.1| - 0.033 14.3 0.0 0.18 11.9 0.0 2.2 2 0 0 2 2 2 0 GHMP kinases C terminal Fer4 PF00037.22 gi|435850922|ref|YP_007312508.1| - 4.2e-50 165.4 90.1 1.7e-07 30.5 3.3 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435850922|ref|YP_007312508.1| - 3.2e-36 123.4 69.9 2.4e-11 43.8 5.6 5.3 4 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435850922|ref|YP_007312508.1| - 4.8e-34 116.3 65.6 3.8e-10 39.8 8.2 5.9 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435850922|ref|YP_007312508.1| - 6.9e-30 101.6 86.7 6.8e-06 25.7 1.9 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435850922|ref|YP_007312508.1| - 1.2e-27 96.3 59.3 8.3e-10 39.2 4.1 7.1 7 0 0 7 7 7 7 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|435850922|ref|YP_007312508.1| - 9.2e-26 89.4 74.4 2.2e-08 33.7 7.1 6.7 3 3 5 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435850922|ref|YP_007312508.1| - 1.6e-25 87.4 80.4 1.8e-05 24.3 2.1 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435850922|ref|YP_007312508.1| - 5.3e-24 84.0 62.2 1.3e-09 37.8 1.9 5.7 2 2 5 7 7 7 7 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435850922|ref|YP_007312508.1| - 6.1e-24 83.6 75.9 6.2e-07 29.1 9.1 6.1 3 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435850922|ref|YP_007312508.1| - 9.1e-21 72.3 76.9 0.0016 18.5 2.1 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_17 PF13534.1 gi|435850922|ref|YP_007312508.1| - 1.9e-19 69.7 62.2 9.8e-06 25.8 1.2 6.3 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435850922|ref|YP_007312508.1| - 7e-14 51.2 111.3 0.008 16.6 4.8 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435850922|ref|YP_007312508.1| - 2.6e-13 50.1 75.2 0.0011 19.3 0.8 8.1 6 2 2 8 8 8 7 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435850922|ref|YP_007312508.1| - 2.8e-09 37.2 74.0 0.15 12.5 0.6 8.4 8 0 0 8 8 8 7 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|435850922|ref|YP_007312508.1| - 5.2e-09 36.5 68.6 0.073 13.6 0.5 8.7 7 1 1 8 8 7 5 4Fe-4S single cluster domain Amidohydro_3 PF07969.6 gi|435850923|ref|YP_007312509.1| - 3.3e-65 220.8 0.1 3.8e-65 220.6 0.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|435850923|ref|YP_007312509.1| - 7.4e-09 35.2 0.1 3.6e-08 33.0 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|435850923|ref|YP_007312509.1| - 0.0027 17.7 0.8 0.23 11.4 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase Pyrophosphatase PF00719.14 gi|435850923|ref|YP_007312509.1| - 0.092 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Inorganic pyrophosphatase GXGXG PF01493.14 gi|435850924|ref|YP_007312510.1| - 1.7e-42 144.6 21.4 2.5e-42 144.1 14.8 1.2 1 0 0 1 1 1 1 GXGXG motif Molydop_binding PF01568.16 gi|435850925|ref|YP_007312511.1| - 1e-10 41.3 0.0 1.3e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|435850926|ref|YP_007312512.1| - 6.8e-16 58.0 0.0 1.3e-15 57.0 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.17 gi|435850926|ref|YP_007312512.1| - 0.012 15.3 0.0 12 5.6 0.0 3.4 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain FdhD-NarQ PF02634.10 gi|435850927|ref|YP_007312513.1| - 1e-51 175.7 0.0 1.2e-51 175.4 0.0 1.1 1 0 0 1 1 1 1 FdhD/NarQ family DUF3653 PF12375.3 gi|435850927|ref|YP_007312513.1| - 0.1 12.8 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Phage protein CbiX PF01903.12 gi|435850928|ref|YP_007312514.1| - 8.4e-30 103.0 0.0 9.5e-30 102.8 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|435850928|ref|YP_007312514.1| - 2.2e-07 30.2 0.0 2.5e-07 30.0 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Peptidase_C11 PF03415.9 gi|435850929|ref|YP_007312515.1| - 9.1e-40 136.8 0.1 1.8e-38 132.6 0.1 2.0 1 1 0 1 1 1 1 Clostripain family DUF169 PF02596.10 gi|435850930|ref|YP_007312516.1| - 3.5e-70 235.7 0.0 4.1e-70 235.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 AAA_2 PF07724.9 gi|435850931|ref|YP_007312517.1| - 9e-57 191.7 0.1 1.5e-51 174.7 0.0 2.9 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA PF00004.24 gi|435850931|ref|YP_007312517.1| - 1.2e-25 90.2 0.2 2e-12 47.4 0.0 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Clp_N PF02861.15 gi|435850931|ref|YP_007312517.1| - 2.9e-24 84.7 2.8 5.4e-13 48.6 0.2 3.4 2 0 0 2 2 2 2 Clp amino terminal domain ClpB_D2-small PF10431.4 gi|435850931|ref|YP_007312517.1| - 2.9e-24 84.7 0.4 2.9e-24 84.7 0.2 3.3 3 0 0 3 3 2 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.9 gi|435850931|ref|YP_007312517.1| - 2.5e-19 69.3 0.3 9.7e-14 51.2 0.0 3.5 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|435850931|ref|YP_007312517.1| - 1.3e-13 51.3 7.7 1.6e-06 28.2 0.0 5.3 5 2 2 7 7 4 3 AAA ATPase domain AAA_22 PF13401.1 gi|435850931|ref|YP_007312517.1| - 9.1e-12 45.2 0.3 0.00036 20.6 0.0 4.0 3 1 1 4 4 4 2 AAA domain AAA_14 PF13173.1 gi|435850931|ref|YP_007312517.1| - 2e-09 37.4 0.0 0.00025 20.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|435850931|ref|YP_007312517.1| - 4.9e-09 37.0 4.3 0.00018 22.3 0.0 4.3 3 2 0 3 3 2 2 AAA domain IstB_IS21 PF01695.12 gi|435850931|ref|YP_007312517.1| - 7.2e-09 35.2 0.1 0.0011 18.4 0.0 2.9 3 0 0 3 3 3 2 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|435850931|ref|YP_007312517.1| - 2.5e-08 33.5 0.0 0.00016 21.2 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_18 PF13238.1 gi|435850931|ref|YP_007312517.1| - 3.1e-07 30.7 5.1 0.011 15.9 0.0 3.9 4 0 0 4 4 3 2 AAA domain T2SE PF00437.15 gi|435850931|ref|YP_007312517.1| - 1.1e-06 27.7 0.0 0.0016 17.3 0.0 3.1 3 0 0 3 3 3 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|435850931|ref|YP_007312517.1| - 1.6e-06 28.0 12.3 0.00053 19.7 1.0 4.5 4 1 0 4 4 3 2 Archaeal ATPase Zeta_toxin PF06414.7 gi|435850931|ref|YP_007312517.1| - 3e-06 26.4 0.0 0.0002 20.5 0.0 2.9 2 0 0 2 2 2 1 Zeta toxin NACHT PF05729.7 gi|435850931|ref|YP_007312517.1| - 4.9e-06 26.2 0.0 0.011 15.3 0.0 2.9 2 1 0 2 2 2 2 NACHT domain ABC_tran PF00005.22 gi|435850931|ref|YP_007312517.1| - 1.3e-05 25.5 0.2 0.074 13.3 0.0 3.6 3 0 0 3 3 3 1 ABC transporter AAA_23 PF13476.1 gi|435850931|ref|YP_007312517.1| - 1.3e-05 25.6 17.6 0.22 11.8 0.0 3.8 3 1 0 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|435850931|ref|YP_007312517.1| - 2.1e-05 24.1 0.0 0.44 10.3 0.0 3.1 3 0 0 3 3 2 2 Part of AAA domain DUF258 PF03193.11 gi|435850931|ref|YP_007312517.1| - 2.2e-05 23.6 0.0 0.11 11.6 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|435850931|ref|YP_007312517.1| - 2.8e-05 24.2 0.0 0.2 11.8 0.0 2.8 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.1 gi|435850931|ref|YP_007312517.1| - 3e-05 24.0 1.5 0.3 11.0 0.0 4.0 3 1 0 3 3 3 2 AAA domain DUF815 PF05673.8 gi|435850931|ref|YP_007312517.1| - 3.3e-05 22.9 0.1 0.011 14.7 0.1 2.9 2 1 0 2 2 2 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.16 gi|435850931|ref|YP_007312517.1| - 0.00019 20.6 0.2 1.3 8.1 0.0 3.3 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|435850931|ref|YP_007312517.1| - 0.00025 20.5 0.6 1.2 8.4 0.0 3.5 2 2 0 2 2 2 2 AAA domain DNA_pol3_delta2 PF13177.1 gi|435850931|ref|YP_007312517.1| - 0.00048 19.8 0.0 0.009 15.6 0.0 2.6 2 0 0 2 2 2 1 DNA polymerase III, delta subunit Miro PF08477.8 gi|435850931|ref|YP_007312517.1| - 0.00056 20.4 0.1 0.17 12.3 0.0 3.2 3 0 0 3 3 2 1 Miro-like protein MMR_HSR1 PF01926.18 gi|435850931|ref|YP_007312517.1| - 0.0006 19.7 0.0 0.51 10.3 0.0 3.3 2 1 0 2 2 2 1 50S ribosome-binding GTPase PhoH PF02562.11 gi|435850931|ref|YP_007312517.1| - 0.00062 19.0 0.0 0.7 9.0 0.0 2.7 2 0 0 2 2 2 2 PhoH-like protein ResIII PF04851.10 gi|435850931|ref|YP_007312517.1| - 0.00079 19.3 4.1 0.56 10.0 0.0 3.6 3 1 1 4 4 3 2 Type III restriction enzyme, res subunit Torsin PF06309.6 gi|435850931|ref|YP_007312517.1| - 0.0012 18.7 0.0 0.0042 16.9 0.0 1.9 2 0 0 2 2 1 1 Torsin AAA_10 PF12846.2 gi|435850931|ref|YP_007312517.1| - 0.0014 18.1 0.2 0.31 10.4 0.0 3.7 3 2 0 4 4 4 1 AAA-like domain AAA_3 PF07726.6 gi|435850931|ref|YP_007312517.1| - 0.0014 18.1 0.1 0.27 10.8 0.0 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.12 gi|435850931|ref|YP_007312517.1| - 0.0018 18.1 10.1 0.35 10.6 0.0 4.5 5 0 0 5 5 4 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|435850931|ref|YP_007312517.1| - 0.002 16.8 0.1 0.4 9.2 0.0 2.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.9 gi|435850931|ref|YP_007312517.1| - 0.0027 17.4 0.0 3.7 7.2 0.0 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|435850931|ref|YP_007312517.1| - 0.0037 16.7 0.0 0.56 9.7 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|435850931|ref|YP_007312517.1| - 0.007 15.9 0.0 2.5 7.7 0.0 2.9 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activ_2 PF14532.1 gi|435850931|ref|YP_007312517.1| - 0.0072 16.3 0.0 0.3 11.1 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|435850931|ref|YP_007312517.1| - 0.013 15.1 0.0 5.6 6.6 0.0 3.1 3 0 0 3 3 2 0 NTPase AAA_33 PF13671.1 gi|435850931|ref|YP_007312517.1| - 0.015 15.1 0.0 0.58 10.0 0.0 2.9 3 0 0 3 3 2 0 AAA domain PduV-EutP PF10662.4 gi|435850931|ref|YP_007312517.1| - 0.015 14.7 0.0 3.3 7.1 0.0 2.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Ras PF00071.17 gi|435850931|ref|YP_007312517.1| - 0.027 13.8 0.0 9 5.6 0.0 3.3 3 0 0 3 3 2 0 Ras family AAA_15 PF13175.1 gi|435850931|ref|YP_007312517.1| - 0.034 13.2 0.0 0.034 13.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain DUF778 PF05608.7 gi|435850931|ref|YP_007312517.1| - 0.036 14.0 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF778) CbiA PF01656.18 gi|435850931|ref|YP_007312517.1| - 0.037 13.4 0.7 3.4 7.0 0.0 2.9 3 0 0 3 3 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|435850931|ref|YP_007312517.1| - 0.049 13.5 0.0 9.2 6.1 0.0 2.9 2 1 0 2 2 2 0 AAA domain AAA_21 PF13304.1 gi|435850931|ref|YP_007312517.1| - 0.16 11.9 0.0 27 4.6 0.0 3.2 3 0 0 3 3 3 0 AAA domain AAA_13 PF13166.1 gi|435850931|ref|YP_007312517.1| - 0.31 9.4 9.3 0.53 8.6 6.4 1.3 1 0 0 1 1 1 0 AAA domain EHN PF06441.7 gi|435850931|ref|YP_007312517.1| - 0.62 10.0 2.7 3.7 7.4 1.0 2.8 3 0 0 3 3 2 0 Epoxide hydrolase N terminus Atg14 PF10186.4 gi|435850931|ref|YP_007312517.1| - 1.5 7.7 9.7 2.7 6.8 6.7 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 HSP20 PF00011.16 gi|435850932|ref|YP_007312518.1| - 2.7e-21 75.3 0.4 3.3e-21 75.0 0.3 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|435850932|ref|YP_007312518.1| - 0.011 15.3 0.2 0.016 14.8 0.1 1.3 1 0 0 1 1 1 0 GvpH CS PF04969.11 gi|435850932|ref|YP_007312518.1| - 0.036 14.6 0.0 0.14 12.7 0.0 1.8 1 1 0 1 1 1 0 CS domain Cpn60_TCP1 PF00118.19 gi|435850933|ref|YP_007312519.1| - 2.5e-123 412.2 15.6 2.8e-123 412.0 10.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Cpn10 PF00166.16 gi|435850934|ref|YP_007312520.1| - 1.1e-23 82.9 1.2 1.3e-23 82.7 0.9 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit HTH_20 PF12840.2 gi|435850935|ref|YP_007312521.1| - 2.1e-07 30.6 0.3 8.8e-07 28.6 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|435850935|ref|YP_007312521.1| - 3.1e-06 26.4 0.0 2.2e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|435850935|ref|YP_007312521.1| - 3.5e-05 23.4 0.1 7.6e-05 22.3 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|435850935|ref|YP_007312521.1| - 0.00024 20.6 0.1 0.00056 19.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|435850935|ref|YP_007312521.1| - 0.00051 19.6 0.2 0.00085 18.9 0.1 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|435850935|ref|YP_007312521.1| - 0.0033 17.4 0.1 0.0054 16.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|435850935|ref|YP_007312521.1| - 0.0034 17.0 0.2 0.0064 16.1 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_15 PF12324.3 gi|435850935|ref|YP_007312521.1| - 0.0081 15.8 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase TFIIE_alpha PF02002.12 gi|435850935|ref|YP_007312521.1| - 0.0084 15.6 0.4 0.019 14.4 0.3 1.6 1 0 0 1 1 1 1 TFIIE alpha subunit DUF2250 PF10007.4 gi|435850935|ref|YP_007312521.1| - 0.022 14.6 0.2 0.038 13.8 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.1 gi|435850935|ref|YP_007312521.1| - 0.022 14.5 0.2 0.044 13.5 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RPA_C PF08784.6 gi|435850935|ref|YP_007312521.1| - 0.024 15.0 0.0 0.042 14.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_45 PF14947.1 gi|435850935|ref|YP_007312521.1| - 0.03 14.1 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix EAP30 PF04157.11 gi|435850935|ref|YP_007312521.1| - 0.032 13.4 0.4 0.063 12.4 0.0 1.7 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_34 PF13601.1 gi|435850935|ref|YP_007312521.1| - 0.072 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MoaE PF02391.12 gi|435850936|ref|YP_007312522.1| - 2e-25 88.8 0.5 3.3e-25 88.1 0.3 1.3 1 0 0 1 1 1 1 MoaE protein MobB PF03205.9 gi|435850936|ref|YP_007312522.1| - 1.1e-18 67.3 1.1 2e-18 66.4 0.2 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|435850936|ref|YP_007312522.1| - 9.6e-05 22.4 0.2 0.00033 20.6 0.1 2.0 1 1 1 2 2 2 1 AAA ATPase domain Miro PF08477.8 gi|435850936|ref|YP_007312522.1| - 0.018 15.5 0.9 0.088 13.3 0.4 2.4 3 1 0 3 3 3 0 Miro-like protein AAA_14 PF13173.1 gi|435850936|ref|YP_007312522.1| - 0.04 13.8 0.4 0.12 12.2 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|435850936|ref|YP_007312522.1| - 0.042 14.6 2.1 0.48 11.2 1.4 2.6 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|435850936|ref|YP_007312522.1| - 0.066 12.4 0.1 0.31 10.2 0.1 2.0 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit MMR_HSR1 PF01926.18 gi|435850936|ref|YP_007312522.1| - 0.11 12.4 0.9 0.19 11.7 0.3 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|435850936|ref|YP_007312522.1| - 0.12 12.5 1.0 0.41 10.7 0.3 2.2 2 1 0 2 2 2 0 AAA domain CbiA PF01656.18 gi|435850936|ref|YP_007312522.1| - 0.17 11.2 4.1 1.9 7.8 0.6 2.9 1 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain GTP_EFTU PF00009.22 gi|435850936|ref|YP_007312522.1| - 0.17 11.2 0.7 0.44 9.9 0.1 2.0 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain NTPase_1 PF03266.10 gi|435850936|ref|YP_007312522.1| - 1.3 8.7 4.1 1.7 8.3 1.1 2.1 2 0 0 2 2 2 0 NTPase RadC PF04002.10 gi|435850937|ref|YP_007312523.1| - 2.8e-46 156.2 0.0 4.4e-46 155.5 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain HHH_2 PF12826.2 gi|435850937|ref|YP_007312523.1| - 0.00093 19.0 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Prok-JAB PF14464.1 gi|435850937|ref|YP_007312523.1| - 0.0023 17.4 0.0 0.0047 16.4 0.0 1.5 2 0 0 2 2 2 1 Prokaryotic homologs of the JAB domain Toxin-JAB1 PF15659.1 gi|435850937|ref|YP_007312523.1| - 0.012 15.4 0.2 0.024 14.5 0.0 1.5 2 0 0 2 2 2 0 JAB-like toxin 1 HHH PF00633.18 gi|435850937|ref|YP_007312523.1| - 0.029 14.0 0.1 0.11 12.2 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif HhH-GPD PF00730.20 gi|435850937|ref|YP_007312523.1| - 0.052 13.8 0.0 0.063 13.5 0.0 1.4 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein HHH_3 PF12836.2 gi|435850937|ref|YP_007312523.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF1743 PF08489.6 gi|435850938|ref|YP_007312524.1| - 9.5e-23 80.1 0.8 3.5e-21 75.1 0.0 2.9 3 1 1 4 4 4 2 Domain of unknown function (DUF1743) YorP PF09629.5 gi|435850938|ref|YP_007312524.1| - 0.0064 16.4 0.0 0.016 15.1 0.0 1.7 1 0 0 1 1 1 1 YorP protein TPP_enzyme_C PF02775.16 gi|435850939|ref|YP_007312525.1| - 6.2e-10 38.8 0.6 2.9e-09 36.6 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|435850939|ref|YP_007312525.1| - 1.3e-06 28.0 0.2 2.8e-06 26.9 0.1 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|435850939|ref|YP_007312525.1| - 0.0036 16.8 1.1 0.0074 15.7 0.2 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|435850939|ref|YP_007312525.1| - 0.1 11.4 0.2 0.18 10.7 0.2 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase tRNA_int_endo PF01974.12 gi|435850940|ref|YP_007312526.1| - 1.1e-48 162.9 2.3 2.2e-24 85.0 0.6 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|435850940|ref|YP_007312526.1| - 6.3e-38 128.1 2.0 1.2e-17 63.1 0.1 3.1 3 1 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.5 gi|435850940|ref|YP_007312526.1| - 0.0094 16.1 0.0 0.022 14.9 0.0 1.6 1 0 0 1 1 1 1 Sen15 protein DUF2209 PF09974.4 gi|435850941|ref|YP_007312527.1| - 6.3e-42 142.6 0.1 7.5e-42 142.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) MMR_HSR1 PF01926.18 gi|435850942|ref|YP_007312528.1| - 2.8e-21 75.6 0.0 6.2e-21 74.5 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|435850942|ref|YP_007312528.1| - 1.1e-14 54.2 0.3 3.9e-14 52.5 0.2 1.9 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|435850942|ref|YP_007312528.1| - 1.1e-07 31.3 0.2 3e-07 29.8 0.1 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B cobW PF02492.14 gi|435850942|ref|YP_007312528.1| - 3e-05 23.5 3.0 0.00053 19.4 0.3 2.5 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.22 gi|435850942|ref|YP_007312528.1| - 3e-05 23.5 0.1 0.0066 15.8 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|435850942|ref|YP_007312528.1| - 0.00082 19.2 0.0 0.0095 15.7 0.0 2.2 1 1 1 2 2 2 1 Dynamin family Arf PF00025.16 gi|435850942|ref|YP_007312528.1| - 0.0097 15.1 0.6 0.03 13.5 0.4 1.8 1 1 0 1 1 1 1 ADP-ribosylation factor family AAA_29 PF13555.1 gi|435850942|ref|YP_007312528.1| - 0.01 15.3 0.0 0.023 14.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|435850942|ref|YP_007312528.1| - 0.012 15.1 0.1 4.8 6.6 0.0 2.8 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation GBP PF02263.14 gi|435850942|ref|YP_007312528.1| - 0.021 13.9 0.0 9.1 5.2 0.0 3.0 3 0 0 3 3 3 0 Guanylate-binding protein, N-terminal domain DUF258 PF03193.11 gi|435850942|ref|YP_007312528.1| - 0.04 13.1 0.0 0.1 11.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|435850942|ref|YP_007312528.1| - 0.041 14.1 0.0 0.24 11.7 0.0 2.1 2 0 0 2 2 2 0 ABC transporter DUF1192 PF06698.6 gi|435850942|ref|YP_007312528.1| - 0.31 10.8 3.8 15 5.4 0.5 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) PHP_C PF13263.1 gi|435850943|ref|YP_007312529.1| - 3e-16 58.6 0.0 6.6e-16 57.5 0.0 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|435850943|ref|YP_007312529.1| - 3.3e-13 49.7 0.0 3.7e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 PHP domain Dynactin PF12455.3 gi|435850943|ref|YP_007312529.1| - 0.034 13.0 0.0 0.049 12.5 0.0 1.1 1 0 0 1 1 1 0 Dynein associated protein DUF447 PF04289.7 gi|435850944|ref|YP_007312530.1| - 8.1e-56 188.3 0.1 9.2e-56 188.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.11 gi|435850945|ref|YP_007312531.1| - 9.8e-77 257.8 0.0 1.2e-76 257.5 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Dus PF01207.12 gi|435850946|ref|YP_007312532.1| - 2e-13 49.8 0.4 2.9e-13 49.3 0.3 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) IMPDH PF00478.20 gi|435850946|ref|YP_007312532.1| - 4.4e-09 35.6 1.5 6.3e-09 35.1 1.1 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|435850946|ref|YP_007312532.1| - 9e-08 31.6 0.9 1.7e-07 30.7 0.3 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein Oxidored_FMN PF00724.15 gi|435850946|ref|YP_007312532.1| - 0.004 16.1 0.2 0.019 13.9 0.1 2.0 2 0 0 2 2 2 1 NADH:flavin oxidoreductase / NADH oxidase family Aldolase PF01081.14 gi|435850946|ref|YP_007312532.1| - 0.018 14.2 1.7 0.044 12.9 1.0 1.7 2 0 0 2 2 2 0 KDPG and KHG aldolase Glu_synthase PF01645.12 gi|435850946|ref|YP_007312532.1| - 0.023 13.6 3.0 0.06 12.2 0.5 2.0 2 0 0 2 2 2 0 Conserved region in glutamate synthase PcrB PF01884.12 gi|435850946|ref|YP_007312532.1| - 0.065 12.4 1.1 0.19 10.9 0.1 2.0 2 0 0 2 2 2 0 PcrB family RecR PF02132.10 gi|435850947|ref|YP_007312533.1| - 0.081 12.3 0.7 0.16 11.4 0.5 1.6 1 0 0 1 1 1 0 RecR protein YhfH PF14149.1 gi|435850947|ref|YP_007312533.1| - 0.2 11.4 0.2 0.2 11.4 0.1 2.0 1 1 1 2 2 2 0 YhfH-like protein Nudix_N_2 PF14803.1 gi|435850947|ref|YP_007312533.1| - 0.22 11.2 2.3 0.35 10.6 0.0 2.3 3 0 0 3 3 3 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|435850947|ref|YP_007312533.1| - 0.25 10.8 2.1 0.51 9.8 0.1 2.1 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1289 PF06945.8 gi|435850947|ref|YP_007312533.1| - 0.3 10.6 1.7 0.46 9.9 1.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1289) zf-ribbon_3 PF13248.1 gi|435850947|ref|YP_007312533.1| - 0.64 9.3 3.4 2.6 7.3 2.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|435850947|ref|YP_007312533.1| - 1.2 8.6 4.4 5.4 6.6 3.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain ELFV_dehydrog PF00208.16 gi|435850948|ref|YP_007312534.1| - 1.2e-74 250.9 2.2 1.4e-74 250.7 1.0 1.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|435850948|ref|YP_007312534.1| - 6.4e-50 168.1 0.0 1e-49 167.4 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Malic_M PF03949.10 gi|435850948|ref|YP_007312534.1| - 0.0011 18.5 0.5 0.0016 18.0 0.4 1.2 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|435850948|ref|YP_007312534.1| - 0.006 15.7 0.2 0.011 14.8 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|435850949|ref|YP_007312535.1| - 1.2e-20 73.6 0.7 2.7e-20 72.6 0.4 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|435850949|ref|YP_007312535.1| - 4.4e-06 26.2 0.1 6.9e-06 25.5 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|435850949|ref|YP_007312535.1| - 8.8e-05 22.2 0.1 0.00012 21.8 0.1 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|435850949|ref|YP_007312535.1| - 0.00082 19.4 0.0 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|435850949|ref|YP_007312535.1| - 0.0032 16.4 0.1 0.0041 16.1 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|435850949|ref|YP_007312535.1| - 0.0057 16.9 0.1 0.01 16.1 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|435850949|ref|YP_007312535.1| - 0.027 14.5 0.1 0.16 12.0 0.0 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase adh_short PF00106.20 gi|435850949|ref|YP_007312535.1| - 0.04 13.8 0.1 0.06 13.2 0.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Transglut_C PF00927.17 gi|435850949|ref|YP_007312535.1| - 0.13 12.3 0.0 0.3 11.1 0.0 1.7 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain PPDK_N PF01326.14 gi|435850950|ref|YP_007312536.1| - 3.3e-57 194.0 0.0 7.4e-57 192.8 0.0 1.5 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DUF2094 PF09867.4 gi|435850950|ref|YP_007312536.1| - 0.088 12.7 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2094) Glu_synthase PF01645.12 gi|435850951|ref|YP_007312537.1| - 1.3e-11 44.0 0.0 3.9e-10 39.2 0.0 2.1 1 1 0 1 1 1 1 Conserved region in glutamate synthase PLA1 PF02253.10 gi|435850951|ref|YP_007312537.1| - 0.18 11.1 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 Phospholipase A1 PMT_2 PF13231.1 gi|435850952|ref|YP_007312538.1| - 8.3e-05 22.5 20.8 8.3e-05 22.5 14.4 5.0 4 1 1 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase EpsG PF14897.1 gi|435850952|ref|YP_007312538.1| - 0.017 14.0 72.6 0.0044 16.0 34.7 2.2 2 0 0 2 2 2 0 EpsG family Glyco_trans_1_4 PF13692.1 gi|435850953|ref|YP_007312539.1| - 8e-17 61.6 0.0 1.3e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|435850953|ref|YP_007312539.1| - 1.9e-12 46.9 0.0 4.8e-12 45.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|435850953|ref|YP_007312539.1| - 9.2e-08 32.2 0.0 1.8e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|435850953|ref|YP_007312539.1| - 0.00097 19.3 0.0 0.0013 18.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|435850953|ref|YP_007312539.1| - 0.0031 17.2 0.0 0.0049 16.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 B12-binding_2 PF02607.12 gi|435850954|ref|YP_007312540.1| - 5e-10 39.2 0.0 5.9e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 B12 binding domain URO-D PF01208.12 gi|435850955|ref|YP_007312541.1| - 6.6e-83 278.4 0.0 7.5e-83 278.2 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DDE_Tnp_1 PF01609.16 gi|435850956|ref|YP_007312542.1| - 3.7e-09 36.4 1.1 6e-09 35.7 0.7 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|435850956|ref|YP_007312542.1| - 0.00057 19.7 0.0 0.0015 18.3 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) NAD_binding_10 PF13460.1 gi|435850957|ref|YP_007312543.1| - 0.0068 16.4 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding TrkA_N PF02254.13 gi|435850957|ref|YP_007312543.1| - 0.044 13.7 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain TM_helix PF05552.7 gi|435850958|ref|YP_007312544.1| - 1.3e-27 95.2 43.9 1.3e-10 40.7 2.0 4.6 5 0 0 5 5 5 3 Conserved TM helix Aminotran_1_2 PF00155.16 gi|435850959|ref|YP_007312545.1| - 2.3e-61 207.7 0.0 2.6e-61 207.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|435850959|ref|YP_007312545.1| - 1.9e-09 36.3 0.0 1.1e-08 33.7 0.0 1.8 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|435850959|ref|YP_007312545.1| - 3e-09 36.4 0.0 4.7e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|435850959|ref|YP_007312545.1| - 7.1e-06 25.3 0.0 1.2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|435850959|ref|YP_007312545.1| - 5.4e-05 22.1 0.0 8.5e-05 21.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_MocR PF12897.2 gi|435850959|ref|YP_007312545.1| - 0.029 12.9 0.0 0.042 12.4 0.0 1.3 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase Fe_dep_repress PF01325.14 gi|435850960|ref|YP_007312546.1| - 8.2e-19 67.2 1.2 1.2e-18 66.7 0.8 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|435850960|ref|YP_007312546.1| - 2.1e-17 62.5 0.3 5.4e-17 61.2 0.2 1.7 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain FeoC PF09012.5 gi|435850960|ref|YP_007312546.1| - 9.1e-07 28.5 0.0 1.5e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator LexA_DNA_bind PF01726.11 gi|435850960|ref|YP_007312546.1| - 0.00017 21.0 0.0 0.00026 20.4 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.14 gi|435850960|ref|YP_007312546.1| - 0.00047 19.8 0.1 0.00084 18.9 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|435850960|ref|YP_007312546.1| - 0.00077 19.0 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|435850960|ref|YP_007312546.1| - 0.0008 18.7 0.0 0.0013 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|435850960|ref|YP_007312546.1| - 0.0022 17.6 0.0 0.0053 16.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|435850960|ref|YP_007312546.1| - 0.011 16.0 0.0 0.016 15.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|435850960|ref|YP_007312546.1| - 0.024 14.3 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|435850960|ref|YP_007312546.1| - 0.029 14.2 0.6 0.048 13.5 0.4 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|435850960|ref|YP_007312546.1| - 0.051 13.6 0.1 0.075 13.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator SWIRM PF04433.12 gi|435850960|ref|YP_007312546.1| - 0.07 13.2 0.0 0.2 11.8 0.0 1.7 2 0 0 2 2 2 0 SWIRM domain HTH_IclR PF09339.5 gi|435850960|ref|YP_007312546.1| - 0.082 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_26 PF13443.1 gi|435850960|ref|YP_007312546.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_45 PF14947.1 gi|435850960|ref|YP_007312546.1| - 0.23 11.3 1.9 0.6 9.9 0.6 2.1 1 1 1 2 2 2 0 Winged helix-turn-helix FeoA PF04023.9 gi|435850961|ref|YP_007312547.1| - 2.6e-18 65.7 0.2 2.8e-18 65.6 0.1 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|435850962|ref|YP_007312548.1| - 3.2e-66 221.4 0.8 4.9e-66 220.8 0.5 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|435850962|ref|YP_007312548.1| - 1.3e-47 160.2 12.0 8.8e-31 106.0 0.8 2.8 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.7 gi|435850962|ref|YP_007312548.1| - 9.3e-22 76.2 4.7 7.9e-21 73.2 0.1 3.0 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|435850962|ref|YP_007312548.1| - 5.8e-15 55.2 0.2 1.1e-14 54.4 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|435850962|ref|YP_007312548.1| - 0.00039 19.6 0.0 0.00067 18.9 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.11 gi|435850962|ref|YP_007312548.1| - 0.0077 15.3 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 AIG1 family NTPase_1 PF03266.10 gi|435850962|ref|YP_007312548.1| - 0.068 12.8 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 NTPase FeoC PF09012.5 gi|435850964|ref|YP_007312550.1| - 1.2e-05 24.8 0.3 1.8e-05 24.3 0.2 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_24 PF13412.1 gi|435850964|ref|YP_007312550.1| - 0.00017 20.8 0.0 0.00028 20.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|435850964|ref|YP_007312550.1| - 0.0072 15.6 0.1 0.011 15.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 FaeA PF04703.7 gi|435850964|ref|YP_007312550.1| - 0.016 15.3 0.1 0.024 14.7 0.1 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_45 PF14947.1 gi|435850964|ref|YP_007312550.1| - 0.029 14.1 0.8 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix Sigma70_r4_2 PF08281.7 gi|435850964|ref|YP_007312550.1| - 0.097 12.1 0.1 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DUF4445 PF14574.1 gi|435850965|ref|YP_007312551.1| - 1e-100 336.8 1.9 1.5e-100 336.3 1.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_7 PF12838.2 gi|435850965|ref|YP_007312551.1| - 9.6e-07 29.0 11.4 2e-06 28.0 7.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435850965|ref|YP_007312551.1| - 2.6e-05 23.6 11.0 0.0012 18.3 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435850965|ref|YP_007312551.1| - 3.3e-05 24.5 11.8 0.00029 21.5 2.1 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_11 PF13247.1 gi|435850965|ref|YP_007312551.1| - 5.8e-05 22.9 5.1 0.00012 21.8 3.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435850965|ref|YP_007312551.1| - 0.00013 21.6 14.9 0.043 13.6 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435850965|ref|YP_007312551.1| - 0.00017 21.3 13.6 0.00056 19.6 9.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435850965|ref|YP_007312551.1| - 0.00048 19.9 10.9 0.00095 18.9 7.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435850965|ref|YP_007312551.1| - 0.00055 20.1 12.8 0.0023 18.1 9.1 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|435850965|ref|YP_007312551.1| - 0.0076 16.6 7.7 0.048 14.0 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435850965|ref|YP_007312551.1| - 0.017 15.4 15.8 0.48 10.8 2.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain PepSY_2 PF13670.1 gi|435850965|ref|YP_007312551.1| - 0.028 14.2 0.2 0.35 10.7 0.0 2.7 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain DUF326 PF03860.11 gi|435850965|ref|YP_007312551.1| - 0.27 11.1 7.3 3.2 7.7 0.3 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) Fer4_3 PF12798.2 gi|435850965|ref|YP_007312551.1| - 0.5 11.0 17.0 1.1 10.0 3.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435850965|ref|YP_007312551.1| - 0.63 10.0 14.9 0.36 10.8 1.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain cobW PF02492.14 gi|435850966|ref|YP_007312552.1| - 2.4e-33 115.0 1.3 5.1e-33 114.0 0.4 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|435850966|ref|YP_007312552.1| - 0.0086 15.7 0.1 0.017 14.8 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B RNase_E_G PF10150.4 gi|435850966|ref|YP_007312552.1| - 0.0093 15.2 0.3 1.6 7.8 0.0 2.1 2 0 0 2 2 2 2 Ribonuclease E/G family ArgK PF03308.11 gi|435850966|ref|YP_007312552.1| - 0.03 13.0 0.8 0.06 12.1 0.6 1.5 1 0 0 1 1 1 0 ArgK protein SRP54 PF00448.17 gi|435850966|ref|YP_007312552.1| - 0.034 13.5 0.7 0.065 12.6 0.2 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|435850966|ref|YP_007312552.1| - 0.085 11.9 0.2 0.16 11.0 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin LpxK PF02606.9 gi|435850966|ref|YP_007312552.1| - 0.16 10.9 0.7 0.24 10.3 0.5 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase DUF2922 PF11148.3 gi|435850966|ref|YP_007312552.1| - 0.19 11.3 1.9 0.46 10.1 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2922) AAA_18 PF13238.1 gi|435850966|ref|YP_007312552.1| - 0.33 11.2 1.5 0.68 10.2 1.0 1.5 1 0 0 1 1 1 0 AAA domain B12-binding PF02310.14 gi|435850967|ref|YP_007312553.1| - 2.1e-19 69.5 0.7 4e-19 68.6 0.5 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|435850967|ref|YP_007312553.1| - 2.5e-16 59.4 0.1 5.2e-16 58.4 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain DNA_pol3_gamma3 PF12169.3 gi|435850967|ref|YP_007312553.1| - 0.21 11.3 1.2 0.23 11.1 0.0 1.6 2 0 0 2 2 2 0 DNA polymerase III subunits gamma and tau domain III MtaB PF12176.3 gi|435850968|ref|YP_007312554.1| - 6.1e-230 763.4 3.5 6.8e-230 763.2 2.4 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit URO-D PF01208.12 gi|435850969|ref|YP_007312555.1| - 2.3e-89 299.7 2.4 2.6e-89 299.5 1.7 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_2 PF01717.13 gi|435850969|ref|YP_007312555.1| - 0.00057 18.9 0.1 0.00086 18.3 0.0 1.3 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain PEP_mutase PF13714.1 gi|435850969|ref|YP_007312555.1| - 0.035 13.3 0.6 0.1 11.8 0.2 1.9 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase DEAD_assoc PF08494.6 gi|435850970|ref|YP_007312556.1| - 1.2e-42 145.7 0.0 2.4e-42 144.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|435850970|ref|YP_007312556.1| - 1.3e-28 99.6 0.0 4.1e-28 97.9 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|435850970|ref|YP_007312556.1| - 1.8e-19 69.3 0.2 7.7e-17 60.9 0.0 3.5 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|435850970|ref|YP_007312556.1| - 5.4e-05 23.0 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit T4SS-DNA_transf PF02534.9 gi|435850970|ref|YP_007312556.1| - 0.013 14.1 0.0 0.13 10.8 0.0 2.1 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer SNF2_N PF00176.18 gi|435850970|ref|YP_007312556.1| - 0.04 12.7 0.0 0.069 11.9 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain Metallophos PF00149.23 gi|435850971|ref|YP_007312557.1| - 1.3e-07 31.1 0.1 1.7e-07 30.8 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|435850971|ref|YP_007312557.1| - 0.00011 22.0 0.0 0.00018 21.4 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DNA_pol_E_B PF04042.11 gi|435850971|ref|YP_007312557.1| - 0.023 13.9 0.0 0.073 12.3 0.0 1.7 1 1 0 1 1 1 0 DNA polymerase alpha/epsilon subunit B DS PF01916.12 gi|435850972|ref|YP_007312558.1| - 2e-85 286.5 0.2 2.4e-85 286.2 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase OMPdecase PF00215.19 gi|435850973|ref|YP_007312559.1| - 2.8e-42 144.6 3.0 3.6e-42 144.3 2.1 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family YfdX PF10938.3 gi|435850973|ref|YP_007312559.1| - 0.00087 18.9 0.4 0.78 9.3 0.0 2.2 2 0 0 2 2 2 2 YfdX protein PcrB PF01884.12 gi|435850973|ref|YP_007312559.1| - 0.0034 16.6 2.8 0.022 14.0 0.3 2.5 1 1 1 2 2 2 1 PcrB family Trp_syntA PF00290.15 gi|435850973|ref|YP_007312559.1| - 0.0072 14.8 1.3 0.013 14.0 0.5 1.6 1 1 0 2 2 2 1 Tryptophan synthase alpha chain Ribul_P_3_epim PF00834.14 gi|435850973|ref|YP_007312559.1| - 0.025 13.7 1.2 0.045 12.8 0.8 1.5 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DHO_dh PF01180.16 gi|435850973|ref|YP_007312559.1| - 0.027 13.4 0.4 0.042 12.8 0.3 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase AP_endonuc_2 PF01261.19 gi|435850973|ref|YP_007312559.1| - 0.065 12.5 0.1 0.47 9.7 0.0 2.1 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel DEAD_assoc PF08494.6 gi|435850973|ref|YP_007312559.1| - 0.15 11.8 0.0 0.31 10.7 0.0 1.5 2 0 0 2 2 2 0 DEAD/H associated NIF3 PF01784.13 gi|435850973|ref|YP_007312559.1| - 0.42 10.1 2.2 2.3 7.7 0.1 2.3 1 1 1 2 2 2 0 NIF3 (NGG1p interacting factor 3) Ppx-GppA PF02541.11 gi|435850974|ref|YP_007312560.1| - 3.3e-36 124.9 0.0 7.3e-35 120.5 0.0 2.0 1 1 0 1 1 1 1 Ppx/GppA phosphatase family FtsA PF14450.1 gi|435850974|ref|YP_007312560.1| - 0.00058 19.6 0.4 0.029 14.2 0.0 2.8 2 1 0 2 2 2 1 Cell division protein FtsA EutA PF06277.6 gi|435850974|ref|YP_007312560.1| - 0.0012 17.5 0.1 0.0032 16.1 0.0 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation protein EutA MreB_Mbl PF06723.8 gi|435850974|ref|YP_007312560.1| - 0.028 13.0 0.0 0.038 12.5 0.0 1.3 1 0 0 1 1 1 0 MreB/Mbl protein PilM_2 PF11104.3 gi|435850974|ref|YP_007312560.1| - 0.12 11.2 0.0 0.3 9.9 0.0 1.6 2 0 0 2 2 2 0 Type IV pilus assembly protein PilM; PP_kinase_C PF13090.1 gi|435850975|ref|YP_007312561.1| - 1.9e-146 487.2 5.5 2.7e-146 486.7 3.8 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|435850975|ref|YP_007312561.1| - 2.3e-52 177.5 1.3 4.2e-52 176.6 0.9 1.5 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|435850975|ref|YP_007312561.1| - 3.4e-36 123.6 0.3 8.7e-36 122.3 0.2 1.8 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|435850975|ref|YP_007312561.1| - 3.7e-14 52.5 1.2 9.3e-07 28.6 0.1 3.1 3 0 0 3 3 3 2 PLD-like domain Toxin_51 PF15531.1 gi|435850975|ref|YP_007312561.1| - 0.022 14.5 0.2 0.086 12.6 0.1 2.0 2 0 0 2 2 2 0 Putative toxin 51 CHAD PF05235.9 gi|435850976|ref|YP_007312562.1| - 2.9e-48 164.4 0.4 3.6e-48 164.1 0.3 1.1 1 0 0 1 1 1 1 CHAD domain PhaG_MnhG_YufB PF03334.9 gi|435850976|ref|YP_007312562.1| - 0.065 13.2 1.8 0.26 11.3 0.1 2.3 2 0 0 2 2 2 0 Na+/H+ antiporter subunit Claudin_2 PF13903.1 gi|435850976|ref|YP_007312562.1| - 4 7.1 10.5 15 5.1 0.1 2.7 2 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF4010 PF13194.1 gi|435850977|ref|YP_007312563.1| - 1.3e-44 152.0 21.9 1.3e-44 152.0 15.2 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|435850977|ref|YP_007312563.1| - 1.3e-12 47.7 7.4 1.3e-12 47.7 5.1 2.8 3 0 0 3 3 3 1 MgtC family PPK2 PF03976.9 gi|435850978|ref|YP_007312564.1| - 3.9e-132 438.5 13.7 4.1e-85 284.6 5.0 2.0 2 0 0 2 2 2 2 Polyphosphate kinase 2 (PPK2) PP1 PF07430.6 gi|435850978|ref|YP_007312564.1| - 0.0025 17.4 1.2 0.11 12.0 0.1 2.6 2 0 0 2 2 2 1 Phloem filament protein PP1 BBP1_C PF15272.1 gi|435850978|ref|YP_007312564.1| - 0.029 13.9 1.0 0.029 13.9 0.7 2.9 4 1 0 4 4 4 0 Spindle pole body component BBP1, C-terminal AAA_18 PF13238.1 gi|435850978|ref|YP_007312564.1| - 0.031 14.5 3.8 0.027 14.7 0.8 2.3 2 1 0 2 2 2 0 AAA domain Patched PF02460.13 gi|435850978|ref|YP_007312564.1| - 3 5.6 5.1 1.2 6.9 1.5 1.7 2 0 0 2 2 2 0 Patched family CYTH PF01928.16 gi|435850979|ref|YP_007312565.1| - 1e-15 57.9 0.1 2.1e-15 56.8 0.1 1.6 1 0 0 1 1 1 1 CYTH domain HD PF01966.17 gi|435850979|ref|YP_007312565.1| - 4.2e-09 36.4 0.5 1.3e-08 34.9 0.4 1.8 1 0 0 1 1 1 1 HD domain PYC_OADA PF02436.13 gi|435850980|ref|YP_007312566.1| - 1.4e-66 223.6 0.2 2.5e-66 222.8 0.1 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|435850980|ref|YP_007312566.1| - 2.4e-43 148.4 0.0 3.5e-43 147.9 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|435850980|ref|YP_007312566.1| - 4.8e-18 64.5 2.6 4.8e-18 64.5 1.8 1.9 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|435850980|ref|YP_007312566.1| - 1.7e-08 33.9 0.1 0.0024 17.5 0.0 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|435850980|ref|YP_007312566.1| - 7.5e-05 22.1 0.0 0.019 14.2 0.0 2.3 1 1 1 2 2 2 2 HlyD family secretion protein RnfC_N PF13375.1 gi|435850980|ref|YP_007312566.1| - 0.00011 21.8 1.0 0.00052 19.6 0.4 2.2 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain NQRA PF05896.6 gi|435850980|ref|YP_007312566.1| - 0.0014 17.8 0.1 0.0025 17.0 0.1 1.3 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HlyD_2 PF12700.2 gi|435850980|ref|YP_007312566.1| - 0.0063 15.7 0.0 1.7 7.7 0.0 2.5 1 1 1 2 2 2 2 HlyD family secretion protein TGT PF01702.13 gi|435850980|ref|YP_007312566.1| - 0.01 15.1 0.0 0.019 14.2 0.0 1.5 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase GCV_H PF01597.14 gi|435850980|ref|YP_007312566.1| - 0.014 15.1 1.1 0.17 11.5 0.1 2.5 1 1 1 2 2 2 0 Glycine cleavage H-protein HlyD_3 PF13437.1 gi|435850980|ref|YP_007312566.1| - 0.026 14.8 0.0 0.17 12.2 0.0 2.3 2 0 0 2 2 2 0 HlyD family secretion protein CPSase_L_D2 PF02786.12 gi|435850981|ref|YP_007312567.1| - 1.6e-79 266.0 0.3 3.5e-79 264.9 0.2 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|435850981|ref|YP_007312567.1| - 4.6e-46 155.4 0.1 3e-45 152.8 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|435850981|ref|YP_007312567.1| - 2.3e-41 140.1 0.0 5.4e-41 138.9 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|435850981|ref|YP_007312567.1| - 4.7e-17 62.3 0.2 1.2e-16 60.9 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|435850981|ref|YP_007312567.1| - 1.3e-13 50.3 0.0 4.3e-13 48.7 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|435850981|ref|YP_007312567.1| - 4.9e-11 42.4 0.0 1.3e-10 41.0 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|435850981|ref|YP_007312567.1| - 4.1e-06 26.3 0.0 2.4e-05 23.8 0.0 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|435850981|ref|YP_007312567.1| - 5.6e-06 26.2 0.1 1.3e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|435850981|ref|YP_007312567.1| - 2.6e-05 23.8 0.1 5.1e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|435850981|ref|YP_007312567.1| - 0.00093 18.5 0.0 0.0018 17.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|435850981|ref|YP_007312567.1| - 0.0038 16.4 0.1 0.0078 15.4 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain Bacteriocin_II PF01721.13 gi|435850981|ref|YP_007312567.1| - 0.021 14.3 2.2 0.031 13.8 0.0 2.2 2 0 0 2 2 2 0 Class II bacteriocin BPL_LplA_LipB PF03099.14 gi|435850982|ref|YP_007312568.1| - 1e-24 86.9 0.0 1.6e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|435850982|ref|YP_007312568.1| - 2.6e-17 62.1 0.1 5.2e-17 61.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|435850982|ref|YP_007312568.1| - 1.7e-06 27.5 0.0 4e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|435850982|ref|YP_007312568.1| - 1.3e-05 24.4 0.1 3.7e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|435850982|ref|YP_007312568.1| - 0.015 15.3 0.0 0.046 13.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|435850982|ref|YP_007312568.1| - 0.024 14.5 0.0 0.058 13.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|435850982|ref|YP_007312568.1| - 0.026 14.1 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain DUF3348 PF11828.3 gi|435850982|ref|YP_007312568.1| - 0.031 13.7 0.0 0.074 12.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3348) Rrf2 PF02082.15 gi|435850982|ref|YP_007312568.1| - 0.046 13.8 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.14 gi|435850982|ref|YP_007312568.1| - 0.09 12.4 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_17 PF12728.2 gi|435850982|ref|YP_007312568.1| - 0.11 12.7 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|435850982|ref|YP_007312568.1| - 0.11 12.0 0.0 0.31 10.6 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|435850982|ref|YP_007312568.1| - 0.11 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 MarR family S-layer PF07752.6 gi|435850983|ref|YP_007312569.1| - 7.7e-10 38.4 0.1 9.2e-10 38.1 0.0 1.1 1 0 0 1 1 1 1 S-layer protein DUF4448 PF14610.1 gi|435850983|ref|YP_007312569.1| - 0.006 16.0 0.0 0.0089 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4448) SKG6 PF08693.5 gi|435850983|ref|YP_007312569.1| - 0.024 13.9 0.2 0.024 13.9 0.1 2.0 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Seryl_tRNA_N PF02403.17 gi|435850984|ref|YP_007312570.1| - 0.00055 19.9 27.8 0.073 13.0 6.5 4.5 2 2 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain MCPsignal PF00015.16 gi|435850984|ref|YP_007312570.1| - 0.0011 18.5 7.0 0.079 12.4 0.8 2.4 2 1 0 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain V_ATPase_I PF01496.14 gi|435850984|ref|YP_007312570.1| - 0.0022 15.9 20.6 0.0038 15.1 13.7 1.5 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family Syntaxin_2 PF14523.1 gi|435850984|ref|YP_007312570.1| - 0.0074 16.2 4.7 0.0074 16.2 3.3 3.7 2 2 1 3 3 3 1 Syntaxin-like protein GAS PF13851.1 gi|435850984|ref|YP_007312570.1| - 0.0079 15.4 33.2 0.05 12.7 11.2 2.5 1 1 0 2 2 2 2 Growth-arrest specific micro-tubule binding DUF2443 PF10398.4 gi|435850984|ref|YP_007312570.1| - 0.011 15.5 0.0 0.011 15.5 0.0 3.8 3 2 0 4 4 4 0 Protein of unknown function (DUF2443) IncA PF04156.9 gi|435850984|ref|YP_007312570.1| - 0.014 15.0 10.7 0.014 15.0 7.4 2.4 2 1 0 2 2 2 0 IncA protein GTP_EFTU PF00009.22 gi|435850984|ref|YP_007312570.1| - 0.048 13.0 0.4 0.25 10.7 0.0 2.2 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain Spc7 PF08317.6 gi|435850984|ref|YP_007312570.1| - 0.061 11.9 27.3 0.012 14.3 6.5 2.3 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF503 PF04456.7 gi|435850984|ref|YP_007312570.1| - 0.14 11.7 4.3 5.8 6.5 0.1 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF503) Flu_NS2 PF00601.14 gi|435850984|ref|YP_007312570.1| - 0.17 12.0 9.6 0.057 13.6 0.7 3.3 3 1 0 3 3 3 0 Influenza non-structural protein (NS2) Laminin_II PF06009.7 gi|435850984|ref|YP_007312570.1| - 0.41 10.3 20.9 1 9.0 6.2 3.4 1 1 1 3 3 3 0 Laminin Domain II Reo_sigmaC PF04582.7 gi|435850984|ref|YP_007312570.1| - 0.81 8.8 5.9 2.3 7.3 1.0 2.6 1 1 2 3 3 3 0 Reovirus sigma C capsid protein Prenyltransf PF01255.14 gi|435850984|ref|YP_007312570.1| - 1.6 7.7 7.2 0.28 10.2 0.6 2.3 1 1 0 2 2 2 0 Putative undecaprenyl diphosphate synthase Fzo_mitofusin PF04799.8 gi|435850984|ref|YP_007312570.1| - 2 7.7 12.9 0.37 10.1 0.5 3.1 2 1 1 3 3 3 0 fzo-like conserved region SecIII_SopE_N PF05364.9 gi|435850984|ref|YP_007312570.1| - 2.4 8.0 6.2 20 5.0 0.0 3.1 2 1 1 3 3 3 0 Salmonella type III secretion SopE effector N-terminus DUF4527 PF15030.1 gi|435850984|ref|YP_007312570.1| - 2.8 7.1 12.1 0.18 11.1 4.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4527) TMF_TATA_bd PF12325.3 gi|435850984|ref|YP_007312570.1| - 2.9 7.6 30.6 4.2 7.1 5.8 4.2 2 2 2 4 4 4 0 TATA element modulatory factor 1 TATA binding APG6 PF04111.7 gi|435850984|ref|YP_007312570.1| - 4.5 6.2 28.6 2.1 7.3 6.3 2.4 1 1 0 2 2 2 0 Autophagy protein Apg6 Fmp27_WPPW PF10359.4 gi|435850984|ref|YP_007312570.1| - 4.8 5.4 21.8 0.95 7.8 2.7 2.4 1 1 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain DUF948 PF06103.6 gi|435850984|ref|YP_007312570.1| - 6 6.8 10.8 2.2 8.2 0.7 3.6 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|435850984|ref|YP_007312570.1| - 7 6.9 10.8 9.1 6.6 2.3 3.8 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein ApoO PF09769.4 gi|435850984|ref|YP_007312570.1| - 7.6 6.2 7.7 12 5.6 0.1 2.9 3 1 0 3 3 3 0 Apolipoprotein O Mod_r PF07200.8 gi|435850984|ref|YP_007312570.1| - 9.9 6.0 27.9 0.9 9.4 5.5 2.9 3 1 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Hemagglutinin PF00509.13 gi|435850985|ref|YP_007312571.1| - 0.0069 14.5 0.2 0.009 14.2 0.2 1.3 1 0 0 1 1 1 1 Haemagglutinin Seryl_tRNA_N PF02403.17 gi|435850985|ref|YP_007312571.1| - 0.0075 16.2 1.1 0.0075 16.2 0.8 3.1 2 2 1 3 3 3 1 Seryl-tRNA synthetase N-terminal domain FlaC_arch PF05377.6 gi|435850985|ref|YP_007312571.1| - 0.01 15.6 0.3 0.01 15.6 0.2 2.6 4 0 0 4 4 3 0 Flagella accessory protein C (FlaC) Vps5 PF09325.5 gi|435850985|ref|YP_007312571.1| - 0.065 12.4 11.6 0.48 9.6 1.0 2.8 2 1 0 3 3 3 0 Vps5 C terminal like DNA_repr_REX1B PF14966.1 gi|435850985|ref|YP_007312571.1| - 0.082 13.2 1.7 1.2 9.5 0.0 2.4 1 1 1 2 2 2 0 DNA repair REX1-B Occludin_ELL PF07303.8 gi|435850985|ref|YP_007312571.1| - 0.18 12.5 7.5 0.24 12.1 1.0 2.3 2 0 0 2 2 2 0 Occludin homology domain Nup54 PF13874.1 gi|435850985|ref|YP_007312571.1| - 0.28 10.8 5.4 0.061 12.9 0.4 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 GAS PF13851.1 gi|435850985|ref|YP_007312571.1| - 0.31 10.1 16.7 0.025 13.8 4.3 2.3 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Uds1 PF15456.1 gi|435850985|ref|YP_007312571.1| - 0.34 10.9 9.2 1 9.3 2.4 2.5 1 1 0 2 2 2 0 Up-regulated During Septation DUF1204 PF06721.6 gi|435850985|ref|YP_007312571.1| - 0.38 9.9 7.2 2.2 7.4 1.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1204) KxDL PF10241.4 gi|435850985|ref|YP_007312571.1| - 0.9 9.4 5.5 0.19 11.6 0.4 2.3 3 0 0 3 3 3 0 Uncharacterized conserved protein FlgN PF05130.7 gi|435850985|ref|YP_007312571.1| - 1.2 9.3 12.2 0.37 11.0 3.3 2.4 1 1 1 2 2 2 0 FlgN protein Phage_lysis PF03245.8 gi|435850985|ref|YP_007312571.1| - 1.4 8.9 5.1 0.73 9.8 0.4 2.5 2 2 1 3 3 3 0 Bacteriophage Rz lysis protein DUF4140 PF13600.1 gi|435850985|ref|YP_007312571.1| - 2.1 8.8 5.7 11 6.5 0.4 2.6 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.15 gi|435850985|ref|YP_007312571.1| - 4.1 7.2 12.9 0.82 9.4 1.0 2.9 2 1 1 3 3 3 0 Prefoldin subunit IncA PF04156.9 gi|435850985|ref|YP_007312571.1| - 4.4 6.8 18.3 4.7 6.7 4.1 2.1 1 1 1 2 2 2 0 IncA protein V_ATPase_I PF01496.14 gi|435850985|ref|YP_007312571.1| - 8.1 4.1 12.0 14 3.3 8.3 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF424 PF04242.8 gi|435850986|ref|YP_007312572.1| - 1.9e-29 101.5 0.4 2.2e-29 101.3 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MCM PF00493.18 gi|435850987|ref|YP_007312573.1| - 2.3e-133 444.1 0.1 3.1e-133 443.6 0.1 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|435850987|ref|YP_007312573.1| - 5.8e-18 65.5 0.3 3.7e-17 62.9 0.1 2.5 3 0 0 3 3 3 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|435850987|ref|YP_007312573.1| - 3.5e-07 29.6 0.1 9.2e-05 21.6 0.0 2.3 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|435850987|ref|YP_007312573.1| - 2.4e-06 27.3 0.0 8.2e-06 25.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|435850987|ref|YP_007312573.1| - 0.003 17.1 0.0 0.011 15.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|435850987|ref|YP_007312573.1| - 0.054 13.7 0.0 0.27 11.4 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SpoU_methylase PF00588.14 gi|435850988|ref|YP_007312574.1| - 2.3e-29 102.1 0.0 3.1e-29 101.6 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF321 PF03778.8 gi|435850988|ref|YP_007312574.1| - 0.35 10.3 2.8 0.29 10.6 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF321) ACPS PF01648.15 gi|435850989|ref|YP_007312575.1| - 2.2e-05 24.2 0.1 8.8e-05 22.2 0.0 2.0 2 1 0 2 2 2 1 4'-phosphopantetheinyl transferase superfamily RIO1 PF01163.17 gi|435850990|ref|YP_007312576.1| - 3.4e-42 143.9 0.0 5e-42 143.4 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|435850990|ref|YP_007312576.1| - 3.9e-26 90.9 0.1 6.6e-26 90.2 0.0 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|435850990|ref|YP_007312576.1| - 6.1e-05 22.8 0.2 0.00017 21.4 0.1 1.6 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|435850990|ref|YP_007312576.1| - 0.0045 16.1 0.0 0.0077 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain DDE_Tnp_1_3 PF13612.1 gi|435850990|ref|YP_007312576.1| - 0.17 11.6 0.5 0.33 10.6 0.2 1.6 2 0 0 2 2 2 0 Transposase DDE domain DUF460 PF04312.8 gi|435850991|ref|YP_007312577.1| - 2.9e-47 159.6 0.1 7.5e-47 158.3 0.1 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Hydrolase PF00702.21 gi|435850991|ref|YP_007312577.1| - 0.0083 16.5 5.3 0.53 10.6 3.1 3.5 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase ALMT PF11744.3 gi|435850991|ref|YP_007312577.1| - 0.047 12.3 1.2 0.062 11.9 0.8 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter Reo_sigmaC PF04582.7 gi|435850991|ref|YP_007312577.1| - 1.2 8.2 3.9 3.4 6.7 2.6 1.8 1 1 1 2 2 2 0 Reovirus sigma C capsid protein IncA PF04156.9 gi|435850991|ref|YP_007312577.1| - 1.8 8.1 26.7 0.05 13.2 13.2 2.0 2 0 0 2 2 2 0 IncA protein PEP-utilisers_N PF05524.8 gi|435850991|ref|YP_007312577.1| - 3.8 7.3 8.5 0.54 10.0 1.0 3.1 1 1 0 2 2 2 0 PEP-utilising enzyme, N-terminal DUF2148 PF09918.4 gi|435850992|ref|YP_007312578.1| - 3.2e-31 106.8 2.2 4.8e-31 106.2 0.9 1.7 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.8 gi|435850992|ref|YP_007312578.1| - 0.00046 19.6 0.7 0.001 18.5 0.5 1.6 1 0 0 1 1 1 1 Putative Fe-S cluster NTP_transf_3 PF12804.2 gi|435850993|ref|YP_007312579.1| - 9.4e-33 113.5 0.1 1.2e-32 113.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|435850993|ref|YP_007312579.1| - 1.2e-05 24.9 0.0 1.8e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.11 gi|435850993|ref|YP_007312579.1| - 0.00034 19.6 0.1 0.00098 18.1 0.1 1.7 1 1 0 1 1 1 1 Guanylyl transferase CofC like NTP_transferase PF00483.18 gi|435850993|ref|YP_007312579.1| - 0.00097 18.4 0.0 0.0013 18.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Glycos_transf_2 PF00535.21 gi|435850993|ref|YP_007312579.1| - 0.0052 16.4 0.0 0.0089 15.7 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 HTH_Tnp_ISL3 PF13542.1 gi|435850994|ref|YP_007312580.1| - 0.1 11.8 0.0 0.22 10.7 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 CheR_N PF03705.10 gi|435850994|ref|YP_007312580.1| - 0.16 11.4 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 CheR methyltransferase, all-alpha domain DUF1638 PF07796.6 gi|435850995|ref|YP_007312581.1| - 4.5e-37 127.2 0.0 6.2e-37 126.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Chalcone PF02431.10 gi|435850995|ref|YP_007312581.1| - 0.019 14.3 0.0 0.034 13.5 0.0 1.3 1 0 0 1 1 1 0 Chalcone-flavanone isomerase Beta-Casp PF10996.3 gi|435850996|ref|YP_007312582.1| - 7.5e-22 77.6 0.0 1.3e-21 76.8 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_2 PF12706.2 gi|435850996|ref|YP_007312582.1| - 1.5e-11 44.1 0.0 3.9e-11 42.8 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|435850996|ref|YP_007312582.1| - 1.3e-09 38.0 0.3 3.8e-09 36.4 0.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|435850996|ref|YP_007312582.1| - 7.9e-08 31.9 0.0 2.6e-07 30.3 0.0 1.9 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|435850996|ref|YP_007312582.1| - 0.12 12.1 0.1 0.25 11.0 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Topoisom_bac PF01131.15 gi|435850997|ref|YP_007312583.1| - 5.9e-116 387.6 1.2 3.3e-115 385.1 0.2 2.1 2 0 0 2 2 2 1 DNA topoisomerase Toprim PF01751.17 gi|435850997|ref|YP_007312583.1| - 4.2e-15 55.5 1.0 1e-14 54.3 0.2 2.1 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|435850997|ref|YP_007312583.1| - 2.6e-11 42.8 1.5 2.6e-11 42.8 1.0 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.1 gi|435850997|ref|YP_007312583.1| - 1.3e-07 31.7 0.9 2.3e-05 24.4 0.1 3.7 3 1 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|435850997|ref|YP_007312583.1| - 9.7e-06 25.0 0.1 0.0011 18.5 0.0 2.6 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|435850997|ref|YP_007312583.1| - 2e-05 24.3 0.1 7.4e-05 22.5 0.1 1.9 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|435850997|ref|YP_007312583.1| - 0.00081 19.2 0.3 0.0028 17.5 0.1 2.1 2 0 0 2 2 2 1 IMS family HHH motif MerR PF00376.18 gi|435850997|ref|YP_007312583.1| - 0.17 11.4 0.5 1.1 8.8 0.0 2.7 3 0 0 3 3 3 0 MerR family regulatory protein FMN_red PF03358.10 gi|435850998|ref|YP_007312584.1| - 1.3e-27 96.1 0.0 1.8e-27 95.7 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|435850998|ref|YP_007312584.1| - 1.4e-16 60.5 0.0 3.1e-16 59.4 0.0 1.6 1 1 1 2 2 2 1 Flavodoxin-like fold DUF169 PF02596.10 gi|435850999|ref|YP_007312585.1| - 2.2e-33 115.4 0.0 2.6e-33 115.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 tRNA-synt_1c PF00749.16 gi|435851000|ref|YP_007312586.1| - 2.2e-60 203.9 0.0 2.8e-60 203.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|435851000|ref|YP_007312586.1| - 1e-27 96.9 0.0 1.6e-27 96.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain HTH_24 PF13412.1 gi|435851001|ref|YP_007312587.1| - 0.00014 21.1 0.1 0.00022 20.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|435851001|ref|YP_007312587.1| - 0.0031 17.1 0.0 0.0041 16.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RNA_pol_Rpc34 PF05158.7 gi|435851001|ref|YP_007312587.1| - 0.012 14.7 0.1 0.016 14.3 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit RepL PF05732.6 gi|435851001|ref|YP_007312587.1| - 0.024 13.8 0.0 0.041 13.1 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) FaeA PF04703.7 gi|435851001|ref|YP_007312587.1| - 0.027 14.6 0.0 0.039 14.1 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.15 gi|435851001|ref|YP_007312587.1| - 0.032 14.3 0.0 0.043 13.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_12 PF08461.5 gi|435851001|ref|YP_007312587.1| - 0.037 13.7 0.1 0.075 12.7 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_5 PF01022.15 gi|435851001|ref|YP_007312587.1| - 0.055 13.1 0.1 0.14 11.8 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|435851001|ref|YP_007312587.1| - 0.06 13.0 0.1 0.09 12.4 0.1 1.2 1 0 0 1 1 1 0 MarR family FAA_hydrolase PF01557.13 gi|435851002|ref|YP_007312588.1| - 7.6e-68 228.2 0.0 9.2e-68 227.9 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family PKD PF00801.15 gi|435851004|ref|YP_007312590.1| - 8.7e-06 25.4 5.3 1.2 8.9 0.0 3.5 3 0 0 3 3 3 3 PKD domain Y_Y_Y PF07495.8 gi|435851004|ref|YP_007312590.1| - 7.5e-05 22.4 6.7 0.32 10.8 0.1 3.4 3 0 0 3 3 3 3 Y_Y_Y domain DUF4165 PF13752.1 gi|435851004|ref|YP_007312590.1| - 0.0013 18.4 1.7 6 6.6 0.0 3.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4165) Copper-bind PF00127.15 gi|435851004|ref|YP_007312590.1| - 0.0044 17.2 10.1 12 6.1 0.1 5.4 3 3 0 3 3 3 2 Copper binding proteins, plastocyanin/azurin family YhjQ PF06564.7 gi|435851004|ref|YP_007312590.1| - 0.012 15.0 0.3 6.1 6.1 0.0 2.9 3 0 0 3 3 3 0 YhjQ protein SSI PF00720.12 gi|435851004|ref|YP_007312590.1| - 0.047 13.6 0.7 62 3.6 0.0 4.0 3 1 1 4 4 4 0 Subtilisin inhibitor-like Rdx PF10262.4 gi|435851004|ref|YP_007312590.1| - 0.059 13.3 0.3 24 5.0 0.0 3.2 3 1 0 3 3 3 0 Rdx family Big_3_4 PF13754.1 gi|435851004|ref|YP_007312590.1| - 3.6 7.9 10.0 15 5.9 0.6 3.9 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) TPR_1 PF00515.23 gi|435851005|ref|YP_007312591.1| - 1.5e-09 37.0 0.1 3.6e-06 26.3 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|435851005|ref|YP_007312591.1| - 3.7e-09 35.7 0.1 2.7e-06 26.8 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|435851005|ref|YP_007312591.1| - 7.1e-08 31.9 0.0 1.3e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 TPR repeat TPR_17 PF13431.1 gi|435851005|ref|YP_007312591.1| - 4.2e-06 26.5 0.0 5.4e-05 23.0 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435851005|ref|YP_007312591.1| - 2.3e-05 23.8 1.9 0.00022 20.7 0.0 2.6 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|435851005|ref|YP_007312591.1| - 3e-05 23.7 0.0 4.3e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435851005|ref|YP_007312591.1| - 6.4e-05 23.2 0.0 0.002 18.6 0.0 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435851005|ref|YP_007312591.1| - 7.1e-05 23.0 0.0 0.00012 22.3 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435851005|ref|YP_007312591.1| - 0.00017 22.1 0.0 0.00026 21.5 0.0 1.3 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435851005|ref|YP_007312591.1| - 0.00084 18.9 0.0 0.22 11.4 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|435851005|ref|YP_007312591.1| - 0.013 14.3 0.0 0.023 13.4 0.0 1.3 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 TPR_12 PF13424.1 gi|435851005|ref|YP_007312591.1| - 0.027 14.4 0.0 0.055 13.3 0.0 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|435851005|ref|YP_007312591.1| - 0.084 13.3 0.0 0.4 11.2 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF3856 PF12968.2 gi|435851005|ref|YP_007312591.1| - 0.091 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF3856) MSC PF09402.5 gi|435851005|ref|YP_007312591.1| - 0.13 10.9 1.4 0.42 9.2 1.0 1.9 1 1 0 1 1 1 0 Man1-Src1p-C-terminal domain Adeno_E3 PF06040.6 gi|435851005|ref|YP_007312591.1| - 0.17 11.8 0.1 0.44 10.4 0.0 1.8 2 0 0 2 2 2 0 Adenovirus E3 protein NAD_binding_1 PF00175.16 gi|435851006|ref|YP_007312592.1| - 6.5e-14 52.4 0.0 1e-13 51.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|435851006|ref|YP_007312592.1| - 5.5e-13 48.1 6.1 1.1e-12 47.1 4.2 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|435851006|ref|YP_007312592.1| - 0.0021 18.1 0.0 0.01 15.9 0.0 2.0 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|435851006|ref|YP_007312592.1| - 0.02 14.7 0.1 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 Ferric reductase NAD binding domain DHO_dh PF01180.16 gi|435851007|ref|YP_007312593.1| - 3.2e-67 226.5 1.7 3.6e-67 226.3 1.2 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|435851007|ref|YP_007312593.1| - 7.5e-09 34.8 0.3 0.00036 19.4 0.0 2.0 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|435851007|ref|YP_007312593.1| - 0.001 18.3 6.7 0.0031 16.7 4.7 1.8 1 1 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.20 gi|435851007|ref|YP_007312593.1| - 0.0014 17.5 0.4 0.0027 16.6 0.3 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|435851007|ref|YP_007312593.1| - 0.0025 17.1 0.9 0.0065 15.7 0.0 2.0 2 1 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.7 gi|435851007|ref|YP_007312593.1| - 0.0047 15.9 1.5 0.009 14.9 0.1 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF561) PcrB PF01884.12 gi|435851007|ref|YP_007312593.1| - 0.025 13.8 1.3 0.23 10.6 0.1 2.2 2 0 0 2 2 2 0 PcrB family Porphobil_deam PF01379.15 gi|435851008|ref|YP_007312594.1| - 3.4e-67 225.5 0.2 5.1e-67 224.9 0.1 1.3 1 1 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|435851008|ref|YP_007312594.1| - 3.4e-10 39.8 0.0 7.2e-10 38.8 0.0 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.16 gi|435851009|ref|YP_007312595.1| - 1.6e-70 237.6 0.0 2.1e-70 237.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III ALAD PF00490.16 gi|435851010|ref|YP_007312596.1| - 9.3e-145 481.5 0.1 1e-144 481.3 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase GlutR_N PF05201.10 gi|435851011|ref|YP_007312597.1| - 3.3e-38 130.6 0.1 7.9e-38 129.4 0.0 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|435851011|ref|YP_007312597.1| - 5.4e-35 120.4 3.2 5.6e-35 120.3 0.3 2.1 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|435851011|ref|YP_007312597.1| - 3e-23 81.6 1.8 5.9e-23 80.7 1.3 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|435851011|ref|YP_007312597.1| - 8.8e-10 38.8 0.4 3.7e-09 36.9 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|435851011|ref|YP_007312597.1| - 2e-07 31.0 0.9 3.5e-07 30.1 0.1 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|435851011|ref|YP_007312597.1| - 3.7e-05 22.9 0.1 8.8e-05 21.7 0.1 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|435851011|ref|YP_007312597.1| - 0.0001 21.1 0.8 0.00015 20.6 0.0 1.6 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_10 PF13460.1 gi|435851011|ref|YP_007312597.1| - 0.00011 22.3 0.1 0.00021 21.3 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding GFO_IDH_MocA PF01408.17 gi|435851011|ref|YP_007312597.1| - 0.00064 20.2 0.0 0.002 18.6 0.0 1.9 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.1 gi|435851011|ref|YP_007312597.1| - 0.00069 19.8 0.3 0.002 18.3 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|435851011|ref|YP_007312597.1| - 0.0021 18.0 1.6 0.0075 16.2 0.8 2.3 1 1 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|435851011|ref|YP_007312597.1| - 0.0051 15.8 0.0 0.009 15.0 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase IlvN PF07991.7 gi|435851011|ref|YP_007312597.1| - 0.0081 15.5 0.0 0.058 12.7 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain THF_DHG_CYH_C PF02882.14 gi|435851011|ref|YP_007312597.1| - 0.015 14.3 0.5 0.36 9.8 0.2 2.8 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.10 gi|435851011|ref|YP_007312597.1| - 0.021 14.4 0.2 0.047 13.3 0.1 1.6 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Peptidase_M15_2 PF05951.8 gi|435851011|ref|YP_007312597.1| - 0.037 13.4 0.6 0.091 12.2 0.4 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF882) DUF2325 PF10087.4 gi|435851011|ref|YP_007312597.1| - 0.05 13.4 0.0 0.19 11.5 0.0 2.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2325) ApbA PF02558.11 gi|435851011|ref|YP_007312597.1| - 0.063 12.7 0.0 0.19 11.1 0.0 1.8 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short PF00106.20 gi|435851011|ref|YP_007312597.1| - 0.098 12.5 1.1 0.62 9.9 0.1 2.5 1 1 2 3 3 3 0 short chain dehydrogenase NAD_binding_7 PF13241.1 gi|435851012|ref|YP_007312598.1| - 1.1e-19 70.6 0.1 3e-19 69.1 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|435851012|ref|YP_007312598.1| - 1.8e-05 24.6 0.3 4.1e-05 23.5 0.2 1.6 1 0 0 1 1 1 1 TrkA-N domain Sirohm_synth_M PF14824.1 gi|435851012|ref|YP_007312598.1| - 0.0024 16.7 0.4 0.0066 15.4 0.0 2.0 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central NAD_Gly3P_dh_N PF01210.18 gi|435851012|ref|YP_007312598.1| - 0.0053 16.5 0.0 0.01 15.5 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|435851012|ref|YP_007312598.1| - 0.0066 15.6 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|435851012|ref|YP_007312598.1| - 0.011 15.2 0.1 0.024 14.2 0.0 1.6 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 3HCDH_N PF02737.13 gi|435851012|ref|YP_007312598.1| - 0.058 13.0 0.0 0.19 11.3 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|435851012|ref|YP_007312598.1| - 0.059 13.7 1.3 2.4 8.6 0.0 3.2 2 2 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase YqzH PF14164.1 gi|435851012|ref|YP_007312598.1| - 0.064 13.1 0.7 1.1 9.2 0.0 2.4 2 0 0 2 2 2 0 YqzH-like protein F420_oxidored PF03807.12 gi|435851012|ref|YP_007312598.1| - 0.074 13.4 0.0 0.19 12.1 0.0 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent HTH_11 PF08279.7 gi|435851013|ref|YP_007312599.1| - 0.026 14.1 0.3 1.6 8.4 0.1 2.3 1 1 1 2 2 2 0 HTH domain Sigma70_r4 PF04545.11 gi|435851013|ref|YP_007312599.1| - 0.053 12.8 0.3 0.13 11.5 0.2 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 DUF4423 PF14394.1 gi|435851013|ref|YP_007312599.1| - 0.088 12.3 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Sigma70_r4_2 PF08281.7 gi|435851013|ref|YP_007312599.1| - 0.16 11.4 0.6 2.3 7.7 0.1 2.7 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|435851014|ref|YP_007312600.1| - 5.1e-06 25.9 0.1 1.9e-05 24.0 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|435851014|ref|YP_007312600.1| - 0.00012 21.7 0.0 0.0002 20.9 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|435851014|ref|YP_007312600.1| - 0.0064 15.8 0.7 0.027 13.8 0.0 2.4 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding PKD PF00801.15 gi|435851014|ref|YP_007312600.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 PKD domain VASP_tetra PF08776.6 gi|435851014|ref|YP_007312600.1| - 2.7 7.3 6.8 2.1 7.7 2.2 2.3 2 0 0 2 2 2 0 VASP tetramerisation domain Radical_SAM PF04055.16 gi|435851015|ref|YP_007312601.1| - 3.3e-22 79.4 0.7 1.1e-21 77.7 0.0 2.1 1 1 2 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|435851015|ref|YP_007312601.1| - 4e-12 46.4 0.0 9.5e-12 45.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|435851015|ref|YP_007312601.1| - 3.3e-09 36.7 1.6 4.3e-09 36.4 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|435851015|ref|YP_007312601.1| - 2.5e-08 34.1 1.3 6.8e-08 32.7 0.9 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Ribosomal_S11 PF00411.14 gi|435851015|ref|YP_007312601.1| - 0.0089 16.1 0.0 0.029 14.5 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein S11 Hydrolase_6 PF13344.1 gi|435851015|ref|YP_007312601.1| - 0.04 13.7 0.0 2.5 8.0 0.0 2.7 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Viral_env_E26 PF11050.3 gi|435851015|ref|YP_007312601.1| - 0.093 11.9 0.0 5.5 6.1 0.0 2.1 2 0 0 2 2 2 0 Virus envelope protein E26 DUF1049 PF06305.6 gi|435851016|ref|YP_007312602.1| - 0.0043 16.4 0.1 0.0049 16.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1049) EVC2_like PF12297.3 gi|435851016|ref|YP_007312602.1| - 0.056 12.0 0.4 0.052 12.1 0.3 1.0 1 0 0 1 1 1 0 Ellis van Creveld protein 2 like protein DUF2621 PF11084.3 gi|435851016|ref|YP_007312602.1| - 0.059 13.0 0.9 0.06 13.0 0.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2621) DUF1467 PF07330.7 gi|435851016|ref|YP_007312602.1| - 0.27 11.0 1.9 0.26 11.0 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1467) CcmE PF03100.10 gi|435851017|ref|YP_007312603.1| - 3.3e-11 42.8 0.2 4.1e-11 42.5 0.1 1.0 1 0 0 1 1 1 1 CcmE SecE PF00584.15 gi|435851017|ref|YP_007312603.1| - 0.016 14.8 1.2 0.016 14.8 0.8 1.8 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex Tad PF13400.1 gi|435851017|ref|YP_007312603.1| - 0.38 10.8 1.6 0.63 10.1 1.1 1.3 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like polyprenyl_synt PF00348.12 gi|435851018|ref|YP_007312604.1| - 5.8e-49 166.2 0.1 7.6e-49 165.8 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Radical_SAM PF04055.16 gi|435851019|ref|YP_007312605.1| - 1.2e-15 58.0 0.0 1.8e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|435851019|ref|YP_007312605.1| - 5e-08 33.1 0.0 1.3e-07 31.8 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|435851019|ref|YP_007312605.1| - 0.00063 19.8 0.0 0.0077 16.3 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain ATP-synt_B PF00430.13 gi|435851020|ref|YP_007312606.1| - 3.5e-05 23.6 23.3 5.1e-05 23.0 10.4 2.0 1 1 1 2 2 2 1 ATP synthase B/B' CF(0) DUF4398 PF14346.1 gi|435851020|ref|YP_007312606.1| - 0.03 14.3 11.3 0.035 14.1 6.9 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) Exonuc_VII_L PF02601.10 gi|435851020|ref|YP_007312606.1| - 0.033 13.3 6.4 0.043 13.0 4.4 1.4 1 1 0 1 1 1 0 Exonuclease VII, large subunit V-ATPase_G PF03179.10 gi|435851020|ref|YP_007312606.1| - 0.041 14.1 16.8 0.065 13.5 11.6 1.4 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Hanta_nucleocap PF00846.13 gi|435851020|ref|YP_007312606.1| - 0.16 10.6 5.4 0.18 10.4 3.7 1.1 1 0 0 1 1 1 0 Hantavirus nucleocapsid protein HrpE PF06188.7 gi|435851020|ref|YP_007312606.1| - 0.17 11.5 8.9 0.49 10.1 6.1 1.7 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.8 gi|435851020|ref|YP_007312606.1| - 0.29 11.5 10.4 0.51 10.7 3.8 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Transposase_24 PF03004.9 gi|435851020|ref|YP_007312606.1| - 0.4 10.5 4.2 0.5 10.2 2.9 1.2 1 0 0 1 1 1 0 Plant transposase (Ptta/En/Spm family) DivIVA PF05103.8 gi|435851020|ref|YP_007312606.1| - 4.2 7.4 17.4 1.2 9.1 5.5 2.1 1 1 1 2 2 2 0 DivIVA protein UCN2 PF11613.3 gi|435851020|ref|YP_007312606.1| - 4.3 7.3 0.0 4.3 7.3 0.0 3.0 3 0 0 3 3 3 0 Agonist of corticotropin releasing factor R2, Urocortin-2 Borrelia_P83 PF05262.6 gi|435851020|ref|YP_007312606.1| - 5.4 5.1 14.8 6.2 4.9 10.3 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein V_ATPase_I PF01496.14 gi|435851021|ref|YP_007312607.1| - 4.6e-107 358.7 13.1 2e-72 244.2 3.5 3.1 1 1 0 2 2 2 2 V-type ATPase 116kDa subunit family Vps51 PF08700.6 gi|435851021|ref|YP_007312607.1| - 0.1 12.4 0.7 0.22 11.3 0.0 1.8 2 0 0 2 2 2 0 Vps51/Vps67 ATP-synt_C PF00137.16 gi|435851022|ref|YP_007312608.1| - 3e-19 68.6 10.9 3.6e-19 68.4 7.6 1.1 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.13 gi|435851023|ref|YP_007312609.1| - 5.4e-29 100.8 15.6 1.8e-28 99.1 10.8 1.7 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|435851023|ref|YP_007312609.1| - 0.012 15.3 10.3 0.013 15.2 6.1 1.9 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) DUF2508 PF10704.4 gi|435851023|ref|YP_007312609.1| - 2.6 8.2 5.3 20 5.4 1.4 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2508) vATP-synt_AC39 PF01992.11 gi|435851024|ref|YP_007312610.1| - 5.1e-90 302.0 8.0 5.8e-90 301.8 5.5 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit MerR-DNA-bind PF09278.6 gi|435851024|ref|YP_007312610.1| - 0.0072 16.7 2.1 1.9 8.9 0.0 3.7 4 0 0 4 4 4 2 MerR, DNA binding ATP-synt_F PF01990.12 gi|435851025|ref|YP_007312611.1| - 1e-17 64.2 0.1 1.2e-17 64.0 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit SOCS PF12610.3 gi|435851025|ref|YP_007312611.1| - 0.033 14.4 0.0 0.049 13.9 0.0 1.2 1 0 0 1 1 1 0 Suppressor of cytokine signalling ATP-synt_ab PF00006.20 gi|435851026|ref|YP_007312612.1| - 9e-98 326.0 0.0 1.2e-97 325.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|435851026|ref|YP_007312612.1| - 7.4e-20 71.5 0.5 1.6e-19 70.4 0.4 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|435851026|ref|YP_007312612.1| - 7.5e-17 61.3 1.6 7.5e-17 61.3 1.1 2.5 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.1 gi|435851026|ref|YP_007312612.1| - 0.0017 18.0 1.9 0.0042 16.7 0.1 2.3 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.17 gi|435851026|ref|YP_007312612.1| - 0.0093 16.0 0.3 3.4 7.7 0.0 2.6 2 0 0 2 2 2 2 Peptidase family M23 NQRA PF05896.6 gi|435851026|ref|YP_007312612.1| - 0.0097 15.1 0.6 0.015 14.4 0.0 1.5 2 0 0 2 2 2 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AAA_22 PF13401.1 gi|435851026|ref|YP_007312612.1| - 0.057 13.5 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF1932 PF09130.6 gi|435851026|ref|YP_007312612.1| - 0.065 12.9 1.0 1.7 8.4 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1932) ATP-synt_ab PF00006.20 gi|435851027|ref|YP_007312613.1| - 9.2e-59 198.5 0.0 1.2e-58 198.2 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|435851027|ref|YP_007312613.1| - 4.1e-18 65.8 0.1 9.4e-18 64.7 0.0 1.6 2 0 0 2 2 2 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|435851027|ref|YP_007312613.1| - 1.3e-10 41.3 1.6 1.3e-10 41.3 1.1 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|435851027|ref|YP_007312613.1| - 1.5e-05 24.8 0.7 3.8e-05 23.5 0.5 1.8 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.12 gi|435851028|ref|YP_007312614.1| - 7e-63 211.7 7.6 7.8e-63 211.5 5.3 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Ead_Ea22 PF13935.1 gi|435851028|ref|YP_007312614.1| - 0.0029 17.9 0.6 0.11 12.8 0.1 2.2 1 1 1 2 2 2 1 Ead/Ea22-like protein TPR_MLP1_2 PF07926.7 gi|435851028|ref|YP_007312614.1| - 0.052 13.2 2.0 1.8 8.3 0.1 2.4 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF3753 PF12575.3 gi|435851029|ref|YP_007312615.1| - 0.029 14.1 0.3 0.035 13.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3753) DUF4051 PF13260.1 gi|435851029|ref|YP_007312615.1| - 0.27 10.6 4.7 0.39 10.0 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) AhpC-TSA PF00578.16 gi|435851030|ref|YP_007312616.1| - 5.7e-38 129.3 0.0 6.7e-38 129.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|435851030|ref|YP_007312616.1| - 2.3e-16 59.6 0.0 2.8e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.9 gi|435851030|ref|YP_007312616.1| - 0.0017 17.9 0.0 0.0069 16.0 0.0 1.9 1 1 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.1 gi|435851030|ref|YP_007312616.1| - 0.016 15.3 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like GSHPx PF00255.14 gi|435851030|ref|YP_007312616.1| - 0.018 14.3 0.0 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 Glutathione peroxidase AhpC-TSA_2 PF13911.1 gi|435851030|ref|YP_007312616.1| - 0.068 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Orn_Arg_deC_N PF02784.11 gi|435851031|ref|YP_007312617.1| - 2e-37 128.7 0.0 2.5e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|435851031|ref|YP_007312617.1| - 1.9e-17 63.0 0.0 2.9e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NT5C PF06941.7 gi|435851032|ref|YP_007312618.1| - 0.0019 17.7 0.0 0.0021 17.6 0.0 1.0 1 0 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) HAD_2 PF13419.1 gi|435851032|ref|YP_007312618.1| - 0.0024 18.1 0.0 0.0026 17.9 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase CMD PF02627.15 gi|435851033|ref|YP_007312619.1| - 6.4e-05 22.7 0.0 8.5e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family tRNA_synt_1c_R1 PF04558.10 gi|435851034|ref|YP_007312620.1| - 0.0073 15.8 1.5 0.011 15.2 0.8 1.4 1 1 0 1 1 1 1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 SMC_Nse1 PF07574.8 gi|435851034|ref|YP_007312620.1| - 0.019 14.6 1.1 0.024 14.2 0.8 1.3 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex LRR_4 PF12799.2 gi|435851034|ref|YP_007312620.1| - 0.021 14.4 0.2 1 9.0 0.0 2.3 2 0 0 2 2 2 0 Leucine Rich repeats (2 copies) DUF1287 PF06940.6 gi|435851034|ref|YP_007312620.1| - 0.024 14.0 0.1 0.027 13.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1287) DUF2317 PF10079.4 gi|435851034|ref|YP_007312620.1| - 0.16 10.5 4.4 0.18 10.3 3.1 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) RapA_C PF12137.3 gi|435851034|ref|YP_007312620.1| - 0.17 10.6 5.1 0.22 10.2 3.5 1.2 1 0 0 1 1 1 0 RNA polymerase recycling family C-terminal FlaC_arch PF05377.6 gi|435851034|ref|YP_007312620.1| - 2.2 8.2 5.7 3.6 7.5 0.3 2.6 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF2680 PF10925.3 gi|435851034|ref|YP_007312620.1| - 2.2 8.1 6.2 36 4.3 0.0 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2680) M PF02370.11 gi|435851034|ref|YP_007312620.1| - 7.7 7.2 7.6 15 6.3 0.2 3.8 3 1 0 3 3 3 0 M protein repeat DUF1616 PF07760.6 gi|435851035|ref|YP_007312621.1| - 3.9e-108 360.9 4.8 4.4e-108 360.7 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) MFS_1 PF07690.11 gi|435851035|ref|YP_007312621.1| - 5.5e-06 25.3 7.8 9.4e-06 24.5 5.4 1.3 1 1 0 1 1 1 1 Major Facilitator Superfamily 7TMR-DISM_7TM PF07695.6 gi|435851035|ref|YP_007312621.1| - 4.1 7.0 13.6 4.3 6.9 2.2 2.8 2 1 0 3 3 3 0 7TM diverse intracellular signalling PrgI PF12666.2 gi|435851035|ref|YP_007312621.1| - 9.4 6.4 8.1 3.7 7.7 0.3 2.8 3 0 0 3 3 3 0 PrgI family protein Abi PF02517.11 gi|435851036|ref|YP_007312622.1| - 1.5e-16 60.2 6.4 1.5e-16 60.2 4.4 3.0 2 1 0 2 2 2 1 CAAX protease self-immunity Transport_MerF PF11431.3 gi|435851037|ref|YP_007312623.1| - 0.019 14.5 0.8 0.068 12.8 0.6 1.9 1 1 0 1 1 1 0 Membrane transport protein MerF DUF3355 PF11835.3 gi|435851037|ref|YP_007312623.1| - 0.27 11.0 1.6 0.31 10.8 1.1 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF3355) NfeD PF01957.13 gi|435851037|ref|YP_007312623.1| - 0.29 11.2 6.3 0.088 12.9 2.3 1.6 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding DUF2069 PF09842.4 gi|435851037|ref|YP_007312623.1| - 0.32 10.9 4.0 0.13 12.2 1.2 1.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2069) Adenylsucc_synt PF00709.16 gi|435851039|ref|YP_007312625.1| - 1.5e-156 521.3 0.0 1.7e-156 521.1 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Ribosomal_S19e PF01090.14 gi|435851040|ref|YP_007312626.1| - 3.9e-57 191.6 0.0 4.4e-57 191.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e dsDNA_bind PF01984.15 gi|435851041|ref|YP_007312627.1| - 3.1e-30 104.2 18.9 3.5e-30 104.1 13.1 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain eIF3_N PF09440.5 gi|435851041|ref|YP_007312627.1| - 0.01 15.9 4.9 0.013 15.6 3.4 1.2 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain Gemini_AL1 PF00799.15 gi|435851041|ref|YP_007312627.1| - 0.037 13.8 0.7 0.11 12.3 0.2 1.8 1 1 1 2 2 2 0 Geminivirus Rep catalytic domain SMC_N PF02463.14 gi|435851041|ref|YP_007312627.1| - 0.11 11.6 1.0 0.13 11.4 0.7 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF4085 PF13315.1 gi|435851041|ref|YP_007312627.1| - 0.16 11.3 1.9 0.22 10.8 1.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4085) DUF3989 PF13150.1 gi|435851041|ref|YP_007312627.1| - 0.39 10.1 3.1 0.64 9.5 0.1 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3989) DUF4355 PF14265.1 gi|435851041|ref|YP_007312627.1| - 2.3 8.1 13.3 9.9 6.1 9.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4355) DUF1104 PF06518.6 gi|435851041|ref|YP_007312627.1| - 5.5 7.1 8.1 5.4 7.2 3.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1104) QueC PF06508.8 gi|435851042|ref|YP_007312628.1| - 0.0027 17.0 0.0 0.0095 15.2 0.0 1.8 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|435851042|ref|YP_007312628.1| - 0.0059 16.1 0.2 0.0088 15.5 0.0 1.4 2 0 0 2 2 2 1 Asparagine synthase Ribosomal_L39 PF00832.15 gi|435851043|ref|YP_007312629.1| - 7.7e-21 73.2 4.8 9.2e-21 73.0 3.4 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein PGAMP PF07644.6 gi|435851043|ref|YP_007312629.1| - 0.11 12.2 0.3 0.18 11.5 0.2 1.4 1 0 0 1 1 1 0 Planctomycete PGAMP Ribosomal_L31e PF01198.14 gi|435851044|ref|YP_007312630.1| - 1.7e-25 88.4 0.7 2e-25 88.2 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|435851045|ref|YP_007312631.1| - 6.3e-64 214.7 0.1 7.3e-64 214.5 0.1 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18ae PF01775.12 gi|435851046|ref|YP_007312632.1| - 4.9e-10 39.3 0.2 5.3e-10 39.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain SelR PF01641.13 gi|435851046|ref|YP_007312632.1| - 0.008 15.8 0.1 0.0085 15.7 0.1 1.1 1 0 0 1 1 1 1 SelR domain Prefoldin PF02996.12 gi|435851047|ref|YP_007312633.1| - 1.7e-29 101.9 2.3 1.9e-29 101.7 1.6 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|435851047|ref|YP_007312633.1| - 2.3e-07 30.5 4.2 0.00067 19.3 0.2 2.1 2 0 0 2 2 2 2 Prefoldin subunit DNA_pol3_delt_C PF14840.1 gi|435851047|ref|YP_007312633.1| - 0.0036 17.4 0.4 0.024 14.7 0.0 2.0 2 0 0 2 2 2 1 Processivity clamp loader gamma complex DNA pol III C-term Fib_alpha PF08702.5 gi|435851047|ref|YP_007312633.1| - 0.01 15.9 3.4 1.8 8.6 0.1 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF722 PF05263.6 gi|435851047|ref|YP_007312633.1| - 0.016 15.3 0.4 0.043 13.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF722) DUF1664 PF07889.7 gi|435851047|ref|YP_007312633.1| - 0.025 14.3 1.5 0.17 11.6 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Tektin PF03148.9 gi|435851047|ref|YP_007312633.1| - 0.052 12.0 3.9 1 7.8 0.1 2.0 2 0 0 2 2 2 0 Tektin family Muted PF14942.1 gi|435851047|ref|YP_007312633.1| - 0.059 13.2 5.6 0.26 11.1 0.2 2.1 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein Syntaxin-6_N PF09177.6 gi|435851047|ref|YP_007312633.1| - 0.062 13.7 2.0 3.8 7.9 0.0 2.1 2 0 0 2 2 2 0 Syntaxin 6, N-terminal CK2S PF15011.1 gi|435851047|ref|YP_007312633.1| - 0.13 12.0 1.5 0.2 11.4 0.1 1.8 1 1 0 2 2 2 0 Casein Kinase 2 substrate DASH_Dad2 PF08654.5 gi|435851047|ref|YP_007312633.1| - 0.15 12.1 4.1 0.088 12.8 0.9 1.9 2 0 0 2 2 2 0 DASH complex subunit Dad2 DUF948 PF06103.6 gi|435851047|ref|YP_007312633.1| - 0.16 11.8 2.9 0.29 11.0 0.5 2.2 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4618 PF15397.1 gi|435851047|ref|YP_007312633.1| - 0.21 10.8 4.7 0.11 11.7 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) IncA PF04156.9 gi|435851047|ref|YP_007312633.1| - 0.25 10.9 4.9 4.7 6.7 0.0 2.1 2 0 0 2 2 2 0 IncA protein Seryl_tRNA_N PF02403.17 gi|435851047|ref|YP_007312633.1| - 0.5 10.4 3.7 3.6 7.6 0.2 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF3287 PF11690.3 gi|435851047|ref|YP_007312633.1| - 0.57 10.2 3.2 13 5.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3287) IFT57 PF10498.4 gi|435851047|ref|YP_007312633.1| - 0.58 8.8 5.4 1.3 7.6 0.1 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Spc7 PF08317.6 gi|435851047|ref|YP_007312633.1| - 0.62 8.6 5.4 0.67 8.5 0.3 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|435851047|ref|YP_007312633.1| - 1.4 8.5 4.5 3.8 7.1 0.8 2.1 2 0 0 2 2 2 0 Mnd1 family Tropomyosin_1 PF12718.2 gi|435851047|ref|YP_007312633.1| - 2.3 8.0 6.7 13 5.6 1.0 2.2 2 0 0 2 2 2 0 Tropomyosin like SlyX PF04102.7 gi|435851047|ref|YP_007312633.1| - 7.8 6.9 9.7 0.65 10.4 1.0 2.4 2 1 0 2 2 2 0 SlyX SRP54 PF00448.17 gi|435851048|ref|YP_007312634.1| - 5.6e-72 241.3 0.4 1e-71 240.4 0.3 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|435851048|ref|YP_007312634.1| - 3.3e-11 43.1 2.1 3.3e-11 43.1 1.4 2.8 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|435851048|ref|YP_007312634.1| - 5.1e-05 22.4 0.1 0.0001 21.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.12 gi|435851048|ref|YP_007312634.1| - 0.00016 21.0 0.1 0.0039 16.5 0.0 2.3 2 0 0 2 2 2 1 Thymidylate kinase AAA_30 PF13604.1 gi|435851048|ref|YP_007312634.1| - 0.00071 19.2 0.7 0.0017 17.9 0.5 1.6 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|435851048|ref|YP_007312634.1| - 0.0013 18.4 0.5 0.0035 17.0 0.1 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|435851048|ref|YP_007312634.1| - 0.0025 17.9 0.4 0.0091 16.1 0.1 2.1 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|435851048|ref|YP_007312634.1| - 0.01 16.0 1.5 0.025 14.7 0.0 2.5 3 1 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|435851048|ref|YP_007312634.1| - 0.016 14.9 0.0 0.035 13.7 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase cobW PF02492.14 gi|435851048|ref|YP_007312634.1| - 0.019 14.4 0.1 0.038 13.4 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF853 PF05872.7 gi|435851048|ref|YP_007312634.1| - 0.024 13.0 0.1 0.32 9.2 0.0 2.3 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF853) AAA_19 PF13245.1 gi|435851048|ref|YP_007312634.1| - 0.063 13.0 0.1 0.14 11.9 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_28 PF13521.1 gi|435851048|ref|YP_007312634.1| - 0.075 12.9 0.2 0.3 11.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|435851048|ref|YP_007312634.1| - 0.079 12.8 0.2 0.19 11.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|435851048|ref|YP_007312634.1| - 0.093 12.4 0.8 0.54 9.9 0.6 2.2 1 1 0 1 1 1 0 NTPase CbiA PF01656.18 gi|435851048|ref|YP_007312634.1| - 0.52 9.6 5.2 3.3 7.0 1.5 2.9 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Trp_syntA PF00290.15 gi|435851049|ref|YP_007312635.1| - 2.1e-89 298.5 0.2 2.4e-89 298.2 0.2 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|435851049|ref|YP_007312635.1| - 1.1e-07 31.3 0.8 1.8e-06 27.4 0.4 2.3 2 0 0 2 2 2 1 PcrB family FMN_dh PF01070.13 gi|435851049|ref|YP_007312635.1| - 3.9e-05 22.6 0.5 6.9e-05 21.8 0.3 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|435851049|ref|YP_007312635.1| - 5.3e-05 22.5 0.2 9e-05 21.8 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|435851049|ref|YP_007312635.1| - 0.00077 18.5 0.4 0.0011 18.0 0.3 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|435851049|ref|YP_007312635.1| - 0.0026 16.9 0.1 0.0042 16.2 0.1 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.20 gi|435851049|ref|YP_007312635.1| - 0.0037 16.1 0.5 0.13 11.1 0.2 2.6 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Methyltrn_RNA_4 PF09936.4 gi|435851049|ref|YP_007312635.1| - 0.004 16.6 0.0 0.0063 16.0 0.0 1.3 1 0 0 1 1 1 1 SAM-dependent RNA methyltransferase ThiG PF05690.9 gi|435851049|ref|YP_007312635.1| - 0.012 14.6 0.1 0.017 14.1 0.1 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG OAF PF14941.1 gi|435851049|ref|YP_007312635.1| - 0.026 13.6 0.0 0.041 13.0 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator, Out at first IGPS PF00218.16 gi|435851049|ref|YP_007312635.1| - 0.026 13.5 0.0 0.042 12.9 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PucR PF07905.6 gi|435851049|ref|YP_007312635.1| - 0.099 12.2 0.1 1.2 8.6 0.0 2.5 3 0 0 3 3 3 0 Purine catabolism regulatory protein-like family PALP PF00291.20 gi|435851050|ref|YP_007312636.1| - 7.4e-39 133.7 0.7 9.1e-39 133.4 0.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PspC PF04024.7 gi|435851051|ref|YP_007312637.1| - 6.2e-27 92.8 1.0 6.7e-27 92.7 0.7 1.0 1 0 0 1 1 1 1 PspC domain IGPS PF00218.16 gi|435851052|ref|YP_007312638.1| - 1.3e-67 227.5 0.9 1.4e-67 227.4 0.6 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|435851052|ref|YP_007312638.1| - 0.00035 19.5 0.6 0.033 13.1 0.0 2.9 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|435851052|ref|YP_007312638.1| - 0.00044 19.5 0.7 0.0013 18.0 0.2 1.9 2 0 0 2 2 2 1 PcrB family ThiG PF05690.9 gi|435851052|ref|YP_007312638.1| - 0.0017 17.5 0.2 0.016 14.3 0.0 2.2 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|435851052|ref|YP_007312638.1| - 0.0044 16.0 0.4 0.0044 16.0 0.3 1.8 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|435851052|ref|YP_007312638.1| - 0.0064 15.7 0.1 0.011 14.9 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|435851052|ref|YP_007312638.1| - 0.021 13.7 0.0 0.039 12.8 0.0 1.5 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Arch_flagellin PF01917.11 gi|435851053|ref|YP_007312639.1| - 1.3e-41 142.2 14.4 1.7e-41 141.9 10.0 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin OppC_N PF12911.2 gi|435851053|ref|YP_007312639.1| - 0.029 13.7 0.1 0.057 12.7 0.1 1.4 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Arch_flagellin PF01917.11 gi|435851054|ref|YP_007312640.1| - 3.3e-42 144.2 12.0 4e-42 144.0 8.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Mrr_N PF14338.1 gi|435851055|ref|YP_007312641.1| - 0.12 12.4 0.0 0.33 11.0 0.0 1.7 2 0 0 2 2 2 0 Mrr N-terminal domain DUF962 PF06127.6 gi|435851056|ref|YP_007312642.1| - 7.5 6.5 6.7 3 7.8 0.2 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF962) Arch_flagellin PF01917.11 gi|435851057|ref|YP_007312643.1| - 2.1e-41 141.6 16.4 2.5e-41 141.3 11.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|435851058|ref|YP_007312644.1| - 1.2e-39 135.8 9.0 1.6e-39 135.5 6.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Alpha_adaptinC2 PF02883.15 gi|435851060|ref|YP_007312646.1| - 0.046 14.0 0.1 0.23 11.8 0.1 2.0 2 0 0 2 2 2 0 Adaptin C-terminal domain Lumazine_bd PF12870.2 gi|435851060|ref|YP_007312646.1| - 0.13 12.3 0.1 0.34 10.9 0.1 1.8 1 1 0 1 1 1 0 Lumazine-binding domain Hist_deacetyl PF00850.14 gi|435851061|ref|YP_007312647.1| - 1.7e-82 277.2 0.1 3.8e-82 276.0 0.0 1.6 1 0 0 1 1 1 1 Histone deacetylase domain Acetyltransf_10 PF13673.1 gi|435851063|ref|YP_007312649.1| - 0.0039 17.3 0.0 0.0062 16.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|435851063|ref|YP_007312649.1| - 0.041 14.0 0.0 0.082 13.0 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CheF-arch PF04283.7 gi|435851064|ref|YP_007312650.1| - 0.0025 17.0 0.0 0.0036 16.5 0.0 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea GRAM PF02893.15 gi|435851064|ref|YP_007312650.1| - 0.02 14.4 0.0 0.1 12.1 0.0 2.0 2 0 0 2 2 2 0 GRAM domain Ubiquitin_2 PF14560.1 gi|435851064|ref|YP_007312650.1| - 0.12 12.6 0.0 0.24 11.7 0.0 1.5 1 1 0 1 1 1 0 Ubiquitin-like domain V4R PF02830.13 gi|435851065|ref|YP_007312651.1| - 0.00072 19.3 2.2 0.0017 18.1 1.5 1.6 1 0 0 1 1 1 1 V4R domain KaiC PF06745.8 gi|435851067|ref|YP_007312653.1| - 1.7e-45 154.9 0.0 3.2e-45 154.0 0.0 1.4 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|435851067|ref|YP_007312653.1| - 1.2e-12 47.6 0.0 2.1e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|435851067|ref|YP_007312653.1| - 6.1e-05 21.5 0.0 0.022 13.0 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_14 PF13173.1 gi|435851067|ref|YP_007312653.1| - 0.001 18.9 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|435851067|ref|YP_007312653.1| - 0.0018 17.7 0.0 0.0042 16.5 0.0 1.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|435851067|ref|YP_007312653.1| - 0.0038 17.3 0.0 0.0075 16.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|435851067|ref|YP_007312653.1| - 0.0041 16.9 0.0 0.012 15.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|435851067|ref|YP_007312653.1| - 0.0046 15.9 0.0 0.008 15.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|435851067|ref|YP_007312653.1| - 0.005 16.5 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|435851067|ref|YP_007312653.1| - 0.0059 17.4 0.1 0.018 15.8 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|435851067|ref|YP_007312653.1| - 0.0062 16.2 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|435851067|ref|YP_007312653.1| - 0.01 15.3 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_29 PF13555.1 gi|435851067|ref|YP_007312653.1| - 0.011 15.2 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activat PF00158.21 gi|435851067|ref|YP_007312653.1| - 0.016 14.6 0.0 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF2075 PF09848.4 gi|435851067|ref|YP_007312653.1| - 0.02 13.9 0.0 0.032 13.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.2 gi|435851067|ref|YP_007312653.1| - 0.023 14.1 0.1 0.041 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|435851067|ref|YP_007312653.1| - 0.028 14.1 0.0 0.056 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RecA PF00154.16 gi|435851067|ref|YP_007312653.1| - 0.056 12.5 0.0 0.091 11.7 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein ABC_tran PF00005.22 gi|435851067|ref|YP_007312653.1| - 0.085 13.1 0.0 0.26 11.6 0.0 1.8 2 0 0 2 2 2 0 ABC transporter MobB PF03205.9 gi|435851067|ref|YP_007312653.1| - 0.089 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CobU PF02283.11 gi|435851067|ref|YP_007312653.1| - 0.092 12.1 0.2 0.59 9.5 0.0 2.2 3 0 0 3 3 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_16 PF13191.1 gi|435851067|ref|YP_007312653.1| - 0.099 12.6 0.1 0.44 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.17 gi|435851067|ref|YP_007312653.1| - 0.13 12.4 0.0 0.57 10.3 0.0 2.1 2 0 0 2 2 2 0 RNA helicase SSFA2_C PF14723.1 gi|435851068|ref|YP_007312654.1| - 0.054 13.2 0.6 0.089 12.5 0.4 1.3 1 0 0 1 1 1 0 Sperm-specific antigen 2 C-terminus DUF4201 PF13870.1 gi|435851069|ref|YP_007312655.1| - 0.00033 20.1 15.6 0.0023 17.3 5.2 3.3 3 0 0 3 3 3 2 Domain of unknown function (DUF4201) Seryl_tRNA_N PF02403.17 gi|435851069|ref|YP_007312655.1| - 0.016 15.2 11.7 0.11 12.5 2.1 3.6 3 0 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.6 gi|435851069|ref|YP_007312655.1| - 0.031 14.1 10.3 0.35 10.7 0.6 4.3 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) FliJ PF02050.11 gi|435851069|ref|YP_007312655.1| - 0.05 13.6 12.3 7.6 6.6 3.7 3.9 3 2 0 3 3 3 0 Flagellar FliJ protein NPV_P10 PF05531.7 gi|435851069|ref|YP_007312655.1| - 0.058 13.6 17.6 0.078 13.2 1.2 5.0 2 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein HAMP PF00672.20 gi|435851069|ref|YP_007312655.1| - 0.1 12.7 0.2 2.2 8.5 0.0 2.8 2 1 0 2 2 2 0 HAMP domain DUF2730 PF10805.3 gi|435851069|ref|YP_007312655.1| - 0.31 10.7 11.0 4.9 6.9 0.1 4.8 3 2 2 5 5 5 0 Protein of unknown function (DUF2730) ATG16 PF08614.6 gi|435851069|ref|YP_007312655.1| - 1.8 8.3 18.1 0.62 9.8 3.9 3.4 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) NYD-SP28 PF14772.1 gi|435851069|ref|YP_007312655.1| - 2.4 8.3 9.7 4.1 7.5 0.1 3.3 3 0 0 3 3 3 0 Sperm tail SNARE PF05739.14 gi|435851069|ref|YP_007312655.1| - 2.5 7.8 15.0 0.39 10.4 1.6 4.0 3 1 1 4 4 4 0 SNARE domain Laminin_II PF06009.7 gi|435851069|ref|YP_007312655.1| - 5.2 6.8 24.8 0.51 10.0 6.8 4.3 2 2 2 4 4 4 0 Laminin Domain II IncA PF04156.9 gi|435851069|ref|YP_007312655.1| - 6 6.4 22.3 13 5.2 0.5 3.5 2 1 0 2 2 2 0 IncA protein Acetyltransf_1 PF00583.19 gi|435851070|ref|YP_007312656.1| - 4.3e-06 26.6 0.0 1.4e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|435851070|ref|YP_007312656.1| - 1.5e-05 25.0 0.0 2.7e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|435851070|ref|YP_007312656.1| - 0.00013 22.0 0.1 0.0003 20.8 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|435851070|ref|YP_007312656.1| - 0.0024 17.5 0.2 0.019 14.6 0.0 2.6 3 1 0 3 3 3 1 FR47-like protein Glyoxalase PF00903.20 gi|435851070|ref|YP_007312656.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HMGL-like PF00682.14 gi|435851073|ref|YP_007312659.1| - 6.4e-72 242.0 2.6 8.5e-72 241.6 1.8 1.2 1 0 0 1 1 1 1 HMGL-like DUF561 PF04481.7 gi|435851073|ref|YP_007312659.1| - 0.059 12.3 0.2 1.6 7.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF561) NAD_kinase PF01513.16 gi|435851074|ref|YP_007312660.1| - 7.3e-59 198.8 0.0 8.8e-59 198.6 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase Cu-oxidase_2 PF07731.9 gi|435851074|ref|YP_007312660.1| - 0.0068 15.9 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 Multicopper oxidase DAGK_cat PF00781.19 gi|435851074|ref|YP_007312660.1| - 0.042 13.2 0.0 0.089 12.2 0.0 1.6 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Inositol_P PF00459.20 gi|435851075|ref|YP_007312661.1| - 5.4e-34 117.7 0.0 5.8e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|435851075|ref|YP_007312661.1| - 0.0029 16.4 0.0 0.0096 14.7 0.0 1.7 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase FBPase_glpX PF03320.8 gi|435851075|ref|YP_007312661.1| - 0.0088 14.7 0.0 0.011 14.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Gp_dh_C PF02800.15 gi|435851076|ref|YP_007312662.1| - 4.5e-24 84.6 0.0 7.1e-24 84.0 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|435851076|ref|YP_007312662.1| - 2.3e-22 79.5 0.2 1.5e-21 76.9 0.2 2.1 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|435851076|ref|YP_007312662.1| - 3.2e-11 43.2 0.4 8.5e-11 41.8 0.3 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|435851076|ref|YP_007312662.1| - 0.00032 21.0 0.1 0.0011 19.3 0.0 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|435851076|ref|YP_007312662.1| - 0.00068 19.9 0.1 0.0013 19.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|435851076|ref|YP_007312662.1| - 0.00089 18.4 0.1 0.0071 15.5 0.1 2.1 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|435851076|ref|YP_007312662.1| - 0.0033 17.9 0.0 0.0071 16.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|435851076|ref|YP_007312662.1| - 0.0046 15.9 0.1 0.0076 15.2 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase RNA_bind_2 PF10133.4 gi|435851077|ref|YP_007312663.1| - 7.9e-21 73.8 1.2 8.6e-21 73.7 0.8 1.0 1 0 0 1 1 1 1 Predicted RNA-binding protein DUF89 PF01937.14 gi|435851078|ref|YP_007312664.1| - 1.1e-53 182.3 0.0 1.2e-53 182.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 DUF2701 PF10857.3 gi|435851078|ref|YP_007312664.1| - 0.064 13.0 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2701) DUF3760 PF12586.3 gi|435851078|ref|YP_007312664.1| - 0.068 13.0 0.0 0.18 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3760) VIT1 PF01988.14 gi|435851079|ref|YP_007312665.1| - 6.4e-27 94.4 12.5 4.9e-14 52.3 1.7 2.0 1 1 1 2 2 2 2 VIT family DUF1700 PF08006.6 gi|435851079|ref|YP_007312665.1| - 5.2 6.3 6.9 0.94 8.7 1.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) Na_Ca_ex PF01699.19 gi|435851080|ref|YP_007312666.1| - 3e-54 182.4 26.9 1.3e-29 102.6 6.1 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein MORN_2 PF07661.8 gi|435851081|ref|YP_007312667.1| - 8.5e-07 28.3 1.7 0.00037 20.2 0.1 3.1 2 1 1 3 3 3 2 MORN repeat variant CopK PF11525.3 gi|435851081|ref|YP_007312667.1| - 0.0069 16.0 4.2 0.1 12.2 0.2 2.9 3 0 0 3 3 3 2 Copper resistance protein K DsbD_2 PF13386.1 gi|435851082|ref|YP_007312668.1| - 3.5e-22 79.1 23.5 4.2e-22 78.8 16.3 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2182 PF09948.4 gi|435851082|ref|YP_007312668.1| - 1.7 8.5 8.8 9.7 6.0 6.1 2.0 1 1 0 1 1 1 0 Predicted metal-binding integral membrane protein (DUF2182) Cad PF03596.8 gi|435851082|ref|YP_007312668.1| - 3 7.4 14.2 0.29 10.7 3.8 2.7 2 2 0 2 2 2 0 Cadmium resistance transporter DUF318 PF03773.8 gi|435851083|ref|YP_007312669.1| - 3.5e-10 39.3 2.7 3.5e-10 39.3 1.8 1.3 2 0 0 2 2 2 1 Predicted permease DUF318 PF03773.8 gi|435851084|ref|YP_007312670.1| - 1.7e-10 40.3 13.6 2.2e-10 40.0 9.4 1.1 1 0 0 1 1 1 1 Predicted permease Herpes_glycop PF01528.11 gi|435851084|ref|YP_007312670.1| - 0.03 13.0 7.7 0.037 12.7 5.3 1.2 1 0 0 1 1 1 0 Herpesvirus glycoprotein M ABA_GPCR PF12430.3 gi|435851084|ref|YP_007312670.1| - 0.057 12.5 2.8 0.048 12.8 0.9 1.6 1 1 1 2 2 2 0 Abscisic acid G-protein coupled receptor DUF1450 PF07293.6 gi|435851085|ref|YP_007312671.1| - 0.0018 18.2 0.1 0.0027 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1450) SBF PF01758.11 gi|435851086|ref|YP_007312672.1| - 5.4e-48 162.8 17.2 5.4e-48 162.8 11.9 2.9 3 0 0 3 3 3 2 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|435851086|ref|YP_007312672.1| - 1.2e-07 31.1 27.0 1.7e-07 30.7 18.7 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) HTH_5 PF01022.15 gi|435851087|ref|YP_007312673.1| - 7.5e-11 41.5 0.1 1.2e-10 40.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|435851087|ref|YP_007312673.1| - 5.4e-08 32.5 0.0 7.2e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain CCDC50_N PF15295.1 gi|435851087|ref|YP_007312673.1| - 0.06 13.2 0.2 0.065 13.1 0.1 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 50 N-terminus SBF PF01758.11 gi|435851088|ref|YP_007312674.1| - 2.2e-25 89.1 15.2 2.2e-25 89.1 10.5 2.2 2 1 0 2 2 2 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|435851088|ref|YP_007312674.1| - 3.3e-14 52.7 24.2 4.2e-14 52.3 16.8 1.2 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) LHC PF00556.15 gi|435851088|ref|YP_007312674.1| - 2.8 7.8 7.1 0.7 9.7 1.2 3.0 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit DUF986 PF06173.7 gi|435851088|ref|YP_007312674.1| - 8.8 6.1 9.8 1.9 8.2 3.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF986) TauE PF01925.14 gi|435851089|ref|YP_007312675.1| - 5e-31 107.9 35.1 5.8e-31 107.7 24.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE CorA PF01544.13 gi|435851090|ref|YP_007312676.1| - 5e-84 281.7 2.7 6.3e-84 281.4 1.9 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein T2SF PF00482.18 gi|435851090|ref|YP_007312676.1| - 0.03 14.2 0.7 0.39 10.6 0.2 2.3 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F DUF4428 PF14471.1 gi|435851092|ref|YP_007312678.1| - 0.011 15.4 4.1 0.019 14.7 2.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) HTH_5 PF01022.15 gi|435851093|ref|YP_007312679.1| - 6.2e-17 60.9 0.9 1.4e-16 59.8 0.6 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|435851093|ref|YP_007312679.1| - 2.7e-15 55.9 0.0 5.4e-15 54.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|435851093|ref|YP_007312679.1| - 0.00015 21.3 0.0 0.00098 18.7 0.0 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|435851093|ref|YP_007312679.1| - 0.0064 15.8 0.2 0.69 9.3 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Lipoprotein_9 PF03180.9 gi|435851093|ref|YP_007312679.1| - 0.007 15.2 0.0 0.01 14.7 0.0 1.3 1 0 0 1 1 1 1 NLPA lipoprotein PaaX PF07848.7 gi|435851093|ref|YP_007312679.1| - 0.0092 15.9 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 PaaX-like protein HTH_34 PF13601.1 gi|435851093|ref|YP_007312679.1| - 0.017 15.1 0.0 0.038 14.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|435851093|ref|YP_007312679.1| - 0.025 14.2 0.1 0.084 12.5 0.0 1.9 2 0 0 2 2 2 0 MarR family DUF2250 PF10007.4 gi|435851093|ref|YP_007312679.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Cdc6_C PF09079.6 gi|435851093|ref|YP_007312679.1| - 0.12 12.0 0.0 0.35 10.6 0.0 1.7 2 0 0 2 2 2 0 CDC6, C terminal DUF2513 PF10711.4 gi|435851093|ref|YP_007312679.1| - 0.13 12.3 0.0 0.49 10.4 0.0 2.0 1 1 2 3 3 3 0 Hypothetical protein (DUF2513) DUF318 PF03773.8 gi|435851094|ref|YP_007312680.1| - 8.5e-59 199.0 27.9 4.1e-58 196.7 19.3 1.8 1 1 0 1 1 1 1 Predicted permease BAG PF02179.11 gi|435851095|ref|YP_007312681.1| - 0.1 12.7 0.2 0.34 11.0 0.0 1.9 2 0 0 2 2 2 0 BAG domain MtrA PF04208.9 gi|435851098|ref|YP_007312684.1| - 1.2e-45 155.1 0.2 1.5e-45 154.8 0.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A Phage_int_SAM_3 PF14659.1 gi|435851098|ref|YP_007312684.1| - 0.083 13.1 0.4 20 5.5 0.1 2.5 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Staph_haemo PF05480.6 gi|435851098|ref|YP_007312684.1| - 0.22 11.2 0.7 0.77 9.4 0.0 2.1 2 0 0 2 2 2 0 Staphylococcus haemolytic protein DGC PF08859.6 gi|435851099|ref|YP_007312685.1| - 4.5e-35 119.8 4.5 6.1e-35 119.4 3.1 1.2 1 0 0 1 1 1 1 DGC domain Thioredoxin_3 PF13192.1 gi|435851100|ref|YP_007312686.1| - 3.1e-27 94.1 3.4 3.4e-27 94.0 2.4 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|435851100|ref|YP_007312686.1| - 0.00012 21.9 0.3 0.00023 21.1 0.2 1.5 1 1 0 1 1 1 1 Glutaredoxin ArsD PF06953.6 gi|435851100|ref|YP_007312686.1| - 0.034 14.3 0.1 0.051 13.7 0.0 1.3 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD DUF2703 PF10865.3 gi|435851100|ref|YP_007312686.1| - 0.049 13.5 0.1 0.049 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2703) NADHdeh_related PF10125.4 gi|435851100|ref|YP_007312686.1| - 0.071 12.2 0.1 0.078 12.1 0.1 1.1 1 0 0 1 1 1 0 NADH dehydrogenase I, subunit N related protein DUF1525 PF07511.6 gi|435851100|ref|YP_007312686.1| - 0.073 13.0 0.3 0.081 12.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) Thioredoxin PF00085.15 gi|435851100|ref|YP_007312686.1| - 0.12 12.0 0.2 0.13 12.0 0.2 1.1 1 0 0 1 1 1 0 Thioredoxin Metallophos_2 PF12850.2 gi|435851101|ref|YP_007312687.1| - 1.7e-31 109.1 0.0 2.1e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|435851101|ref|YP_007312687.1| - 1.7e-13 50.4 0.2 2.9e-13 49.6 0.2 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|435851101|ref|YP_007312687.1| - 0.0047 16.1 0.0 0.085 11.9 0.0 2.1 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily DUF318 PF03773.8 gi|435851102|ref|YP_007312688.1| - 3.1e-81 272.7 29.2 3.8e-81 272.4 20.3 1.0 1 0 0 1 1 1 1 Predicted permease Hydantoinase_A PF01968.13 gi|435851104|ref|YP_007312690.1| - 2.1e-74 250.2 0.0 2.1e-74 250.2 0.0 2.1 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|435851104|ref|YP_007312690.1| - 2.8e-39 134.4 1.8 1.5e-36 125.5 0.1 2.6 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|435851104|ref|YP_007312690.1| - 1.3e-06 27.0 2.3 0.009 14.3 0.1 2.2 2 0 0 2 2 2 2 MutL protein StbA PF06406.6 gi|435851104|ref|YP_007312690.1| - 0.0016 17.4 0.1 0.0051 15.8 0.0 1.8 2 0 0 2 2 2 1 StbA protein FtsA PF14450.1 gi|435851104|ref|YP_007312690.1| - 0.058 13.2 1.0 12 5.7 0.1 2.7 2 0 0 2 2 2 0 Cell division protein FtsA PS_pyruv_trans PF04230.8 gi|435851104|ref|YP_007312690.1| - 0.14 11.8 0.0 0.58 9.8 0.0 1.9 2 0 0 2 2 2 0 Polysaccharide pyruvyl transferase BcrAD_BadFG PF01869.15 gi|435851104|ref|YP_007312690.1| - 0.78 8.9 6.2 9.8 5.3 3.8 2.6 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family CBS PF00571.23 gi|435851105|ref|YP_007312691.1| - 7.6e-18 64.0 3.2 1.5e-11 43.8 0.1 2.2 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|435851105|ref|YP_007312691.1| - 1.5e-14 53.5 0.5 4e-14 52.1 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|435851105|ref|YP_007312691.1| - 1.6e-12 47.4 0.1 3.6e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|435851105|ref|YP_007312691.1| - 2.6e-09 37.0 0.6 8.6e-09 35.3 0.0 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|435851105|ref|YP_007312691.1| - 1.7e-05 24.3 0.2 0.00012 21.6 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|435851105|ref|YP_007312691.1| - 1.8e-05 24.4 0.1 0.0004 20.1 0.0 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|435851105|ref|YP_007312691.1| - 0.0017 18.5 0.0 0.019 15.1 0.0 2.4 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|435851105|ref|YP_007312691.1| - 0.019 14.3 0.1 0.049 13.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DNA_pol3_beta_2 PF02767.11 gi|435851105|ref|YP_007312691.1| - 0.022 14.8 0.2 0.041 13.9 0.1 1.6 1 1 0 1 1 1 0 DNA polymerase III beta subunit, central domain MarR_2 PF12802.2 gi|435851105|ref|YP_007312691.1| - 0.12 12.0 0.1 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 MarR family Aminotran_5 PF00266.14 gi|435851106|ref|YP_007312692.1| - 1.5e-45 155.5 0.0 1.9e-45 155.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|435851106|ref|YP_007312692.1| - 5.4e-07 29.0 0.0 8e-07 28.4 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|435851106|ref|YP_007312692.1| - 9.3e-05 21.5 0.0 0.00019 20.5 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_3 PF00202.16 gi|435851106|ref|YP_007312692.1| - 0.0069 15.2 0.0 0.88 8.3 0.0 2.2 1 1 0 2 2 2 2 Aminotransferase class-III DMRL_synthase PF00885.14 gi|435851107|ref|YP_007312693.1| - 3.6e-21 75.3 0.1 4.1e-21 75.1 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.14 gi|435851108|ref|YP_007312694.1| - 1.3e-31 109.2 0.2 1.4e-31 109.0 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.16 gi|435851109|ref|YP_007312695.1| - 2.1e-65 221.0 0.0 2.4e-65 220.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|435851109|ref|YP_007312695.1| - 0.00042 19.4 0.0 0.00062 18.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|435851109|ref|YP_007312695.1| - 0.00094 18.0 0.0 0.015 14.0 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|435851109|ref|YP_007312695.1| - 0.0012 17.2 0.0 0.0027 16.0 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Rsbr_N PF08678.5 gi|435851109|ref|YP_007312695.1| - 0.09 12.6 0.1 0.24 11.2 0.0 1.7 2 0 0 2 2 2 0 Rsbr N terminal CTP_transf_2 PF01467.21 gi|435851110|ref|YP_007312696.1| - 2.4e-18 66.6 0.0 3.2e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|435851110|ref|YP_007312696.1| - 0.058 13.0 0.0 0.17 11.5 0.0 1.9 1 1 0 1 1 1 0 FAD synthetase DUF39 PF01837.11 gi|435851111|ref|YP_007312697.1| - 1.5e-150 500.5 0.5 2e-150 500.1 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|435851111|ref|YP_007312697.1| - 2.2e-26 91.3 2.1 2.7e-12 46.2 0.0 2.6 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|435851111|ref|YP_007312697.1| - 0.037 14.1 0.0 1.8 8.6 0.0 2.5 1 1 1 2 2 2 0 Ribosomal protein L9, C-terminal domain Fer4 PF00037.22 gi|435851112|ref|YP_007312698.1| - 5.4e-18 63.7 12.1 3.6e-09 35.8 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435851112|ref|YP_007312698.1| - 5.9e-13 48.8 24.7 1.5e-09 37.9 9.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851112|ref|YP_007312698.1| - 1.7e-12 46.4 14.4 3.3e-06 26.7 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435851112|ref|YP_007312698.1| - 1.4e-11 43.6 13.0 4.4e-06 26.3 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435851112|ref|YP_007312698.1| - 2.2e-11 43.9 12.1 3.6e-11 43.2 8.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435851112|ref|YP_007312698.1| - 2.2e-11 43.3 26.8 6.7e-09 35.4 10.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435851112|ref|YP_007312698.1| - 1.6e-10 40.8 5.8 1.1e-05 25.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851112|ref|YP_007312698.1| - 3.9e-10 40.3 10.0 0.00011 22.9 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|435851112|ref|YP_007312698.1| - 5e-09 36.3 4.2 0.00052 20.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435851112|ref|YP_007312698.1| - 5.5e-08 33.0 13.8 0.00015 22.1 0.8 2.6 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|435851112|ref|YP_007312698.1| - 1.5e-07 31.1 13.4 0.00053 19.7 1.7 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435851112|ref|YP_007312698.1| - 4.8e-07 29.5 15.0 0.00041 20.4 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435851112|ref|YP_007312698.1| - 5.6e-07 29.8 13.1 0.00054 20.3 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435851112|ref|YP_007312698.1| - 1.9e-06 28.0 19.9 0.0049 17.3 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|435851112|ref|YP_007312698.1| - 5.7e-06 26.8 16.4 0.00034 21.1 2.2 2.7 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|435851112|ref|YP_007312698.1| - 0.00024 20.9 5.6 0.0006 19.6 3.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain NIL PF09383.5 gi|435851112|ref|YP_007312698.1| - 0.0004 19.8 0.2 0.0005 19.5 0.1 1.1 1 0 0 1 1 1 1 NIL domain Fer4_19 PF06902.6 gi|435851112|ref|YP_007312698.1| - 0.067 13.0 4.7 0.13 12.0 3.3 1.5 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster c-SKI_SMAD_bind PF08782.5 gi|435851112|ref|YP_007312698.1| - 0.22 11.6 8.2 1.7 8.8 0.3 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain DUF678 PF05077.7 gi|435851112|ref|YP_007312698.1| - 1.7 8.6 7.2 8.1 6.5 5.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF678) ApbE PF02424.10 gi|435851113|ref|YP_007312699.1| - 1.2e-22 80.4 6.9 1.6e-22 80.0 4.8 1.2 1 0 0 1 1 1 1 ApbE family AIM24 PF01987.12 gi|435851114|ref|YP_007312700.1| - 4.9e-56 189.5 0.3 6e-56 189.2 0.2 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Thioredoxin_3 PF13192.1 gi|435851115|ref|YP_007312701.1| - 5.2e-14 51.8 0.0 6.3e-14 51.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|435851115|ref|YP_007312701.1| - 7e-08 32.3 0.1 9.1e-08 31.9 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.15 gi|435851115|ref|YP_007312701.1| - 4.9e-05 22.9 0.1 5.4e-05 22.8 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|435851115|ref|YP_007312701.1| - 0.0017 18.5 0.2 0.0045 17.1 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|435851115|ref|YP_007312701.1| - 0.0061 16.6 1.1 0.11 12.5 0.0 2.5 1 1 2 3 3 3 1 Thioredoxin-like DUF836 PF05768.9 gi|435851115|ref|YP_007312701.1| - 0.0074 16.5 0.0 0.0074 16.5 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_4 PF13462.1 gi|435851115|ref|YP_007312701.1| - 0.25 11.3 1.2 0.94 9.4 0.1 1.9 1 1 1 2 2 2 0 Thioredoxin Pyr_redox_2 PF07992.9 gi|435851116|ref|YP_007312702.1| - 3.1e-34 118.6 1.0 3.9e-34 118.3 0.7 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|435851116|ref|YP_007312702.1| - 2.7e-17 63.4 0.5 1.9e-13 50.9 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|435851116|ref|YP_007312702.1| - 2.3e-14 53.5 7.3 1.2e-12 48.0 0.2 3.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|435851116|ref|YP_007312702.1| - 2.2e-09 36.7 4.9 0.00017 20.6 0.5 2.5 1 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|435851116|ref|YP_007312702.1| - 1.1e-08 34.3 3.2 2e-05 23.6 0.2 3.8 3 1 1 4 4 4 1 FAD binding domain HI0933_like PF03486.9 gi|435851116|ref|YP_007312702.1| - 2.4e-08 32.8 2.7 0.00023 19.7 0.1 3.2 3 0 0 3 3 3 2 HI0933-like protein Thi4 PF01946.12 gi|435851116|ref|YP_007312702.1| - 2.2e-06 26.9 0.8 0.00024 20.3 0.1 2.5 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|435851116|ref|YP_007312702.1| - 2.4e-06 26.9 0.4 7.3e-06 25.3 0.1 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|435851116|ref|YP_007312702.1| - 3.9e-06 25.9 13.6 0.011 14.6 0.4 4.3 3 2 2 5 5 5 3 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|435851116|ref|YP_007312702.1| - 2.9e-05 23.2 2.4 0.0017 17.4 0.2 2.5 3 0 0 3 3 3 1 FAD binding domain NAD_binding_7 PF13241.1 gi|435851116|ref|YP_007312702.1| - 0.00022 21.4 1.0 0.074 13.3 0.1 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|435851116|ref|YP_007312702.1| - 0.00031 20.7 0.2 0.0038 17.2 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|435851116|ref|YP_007312702.1| - 0.0029 16.6 0.3 0.088 11.7 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|435851116|ref|YP_007312702.1| - 0.012 14.5 2.8 1.9 7.3 0.0 2.4 2 1 1 3 3 3 0 Lycopene cyclase protein Shikimate_DH PF01488.15 gi|435851116|ref|YP_007312702.1| - 0.012 15.6 1.2 0.018 15.1 0.0 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase FMO-like PF00743.14 gi|435851116|ref|YP_007312702.1| - 0.035 12.3 0.2 0.098 10.8 0.0 1.8 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.1 gi|435851116|ref|YP_007312702.1| - 0.2 11.4 5.4 0.91 9.2 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|435851116|ref|YP_007312702.1| - 0.98 7.9 3.7 3.3 6.2 0.4 2.5 2 1 1 3 3 3 0 Tryptophan halogenase DUF2111 PF09884.4 gi|435851117|ref|YP_007312703.1| - 1e-33 115.0 2.8 1.5e-33 114.4 2.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) UPF0104 PF03706.8 gi|435851118|ref|YP_007312704.1| - 0.039 13.2 1.3 0.042 13.1 0.9 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF3671 PF12420.3 gi|435851118|ref|YP_007312704.1| - 0.26 11.2 4.2 0.31 11.0 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function TRIQK PF15168.1 gi|435851118|ref|YP_007312704.1| - 1.9 8.4 5.7 0.71 9.8 0.7 1.9 1 1 1 2 2 2 0 Triple QxxK/R motif-containing protein family DUF3894 PF13033.1 gi|435851118|ref|YP_007312704.1| - 4 7.5 10.2 2.2 8.3 2.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3894) ATP-synt_8 PF00895.15 gi|435851118|ref|YP_007312704.1| - 4.2 7.6 8.0 0.13 12.4 1.1 1.8 2 0 0 2 2 2 0 ATP synthase protein 8 Maf PF02545.9 gi|435851119|ref|YP_007312705.1| - 5.6e-56 188.7 0.1 6.7e-56 188.5 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein YjgF_endoribonc PF14588.1 gi|435851119|ref|YP_007312705.1| - 0.09 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease EF1_GNE PF00736.14 gi|435851121|ref|YP_007312707.1| - 1.8e-21 75.6 0.1 1.9e-21 75.5 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|435851121|ref|YP_007312707.1| - 0.097 12.8 0.2 9 6.5 0.0 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF1610 PF07754.6 gi|435851122|ref|YP_007312708.1| - 7.3e-11 41.9 18.8 2.7e-05 24.1 4.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.1 gi|435851122|ref|YP_007312708.1| - 0.0033 16.8 1.4 0.0033 16.8 0.9 3.0 2 2 0 2 2 2 1 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|435851122|ref|YP_007312708.1| - 0.011 15.4 7.3 0.074 12.7 0.1 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|435851122|ref|YP_007312708.1| - 0.011 15.4 12.7 0.045 13.5 8.8 2.0 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|435851122|ref|YP_007312708.1| - 0.018 14.7 9.8 0.13 11.9 2.7 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-UBP PF02148.14 gi|435851122|ref|YP_007312708.1| - 0.027 14.5 1.1 0.027 14.5 0.7 2.1 2 0 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-HYPF PF07503.7 gi|435851122|ref|YP_007312708.1| - 0.068 12.5 12.1 0.83 9.1 0.1 2.2 2 0 0 2 2 2 0 HypF finger zf-H2C2_2 PF13465.1 gi|435851122|ref|YP_007312708.1| - 0.07 13.4 10.3 2.6 8.5 0.5 3.5 3 1 1 4 4 4 0 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|435851122|ref|YP_007312708.1| - 0.13 11.4 14.0 3.4 6.9 0.0 3.7 2 1 1 3 3 3 0 zinc-ribbon domain PolC_DP2 PF03833.8 gi|435851122|ref|YP_007312708.1| - 0.45 8.1 6.3 0.49 7.9 4.3 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-piccolo PF05715.8 gi|435851122|ref|YP_007312708.1| - 0.49 10.4 7.5 0.28 11.2 2.0 2.0 2 0 0 2 2 2 0 Piccolo Zn-finger zf-CHY PF05495.7 gi|435851122|ref|YP_007312708.1| - 0.64 10.2 6.4 0.98 9.6 4.4 1.4 1 1 0 1 1 1 0 CHY zinc finger DNA_RNApol_7kD PF03604.8 gi|435851122|ref|YP_007312708.1| - 0.68 9.4 12.6 1.6 8.2 0.1 3.5 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit C1_1 PF00130.17 gi|435851122|ref|YP_007312708.1| - 0.72 9.6 10.1 2.1 8.1 0.2 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS91 PF14319.1 gi|435851122|ref|YP_007312708.1| - 0.96 8.9 10.0 1.7 8.1 6.9 1.4 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-HIT PF04438.11 gi|435851122|ref|YP_007312708.1| - 1.2 8.8 15.6 0.28 10.8 3.4 2.9 1 1 1 2 2 2 0 HIT zinc finger zf-RING_5 PF14634.1 gi|435851122|ref|YP_007312708.1| - 1.2 8.9 11.8 1 9.1 0.6 2.4 2 1 0 2 2 2 0 zinc-RING finger domain Tnp_zf-ribbon_2 PF13842.1 gi|435851122|ref|YP_007312708.1| - 1.4 9.3 15.2 0.38 11.2 4.4 2.8 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon C1_3 PF07649.7 gi|435851122|ref|YP_007312708.1| - 1.5 8.8 11.2 16 5.6 5.3 2.9 2 1 0 2 2 2 0 C1-like domain HypA PF01155.14 gi|435851122|ref|YP_007312708.1| - 1.6 8.4 9.9 0.62 9.7 3.0 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|435851122|ref|YP_007312708.1| - 1.7 7.9 15.3 3.1 7.1 0.2 3.2 2 1 0 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|435851122|ref|YP_007312708.1| - 1.9 8.0 12.5 0.48 9.9 0.5 3.1 2 2 0 2 2 2 0 A2L zinc ribbon domain zf-tcix PF14952.1 gi|435851122|ref|YP_007312708.1| - 2 7.8 14.0 3.3 7.1 0.1 2.9 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding DUF4428 PF14471.1 gi|435851122|ref|YP_007312708.1| - 2.4 7.9 8.0 0.13 12.0 1.9 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4428) UPF0547 PF10571.4 gi|435851122|ref|YP_007312708.1| - 2.4 7.9 9.6 1.4 8.6 3.7 2.6 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Mss51 PF13824.1 gi|435851122|ref|YP_007312708.1| - 3.1 7.7 12.7 21 5.0 5.7 2.8 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_4 PF13894.1 gi|435851122|ref|YP_007312708.1| - 3.2 8.2 12.4 7.2 7.1 1.5 3.2 3 1 0 3 3 3 0 C2H2-type zinc finger Elf1 PF05129.8 gi|435851122|ref|YP_007312708.1| - 3.5 7.3 10.6 3.7 7.2 3.3 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like ADK_lid PF05191.9 gi|435851122|ref|YP_007312708.1| - 3.7 7.3 11.0 6.3 6.5 0.1 3.5 4 0 0 4 4 4 0 Adenylate kinase, active site lid Spt4 PF06093.8 gi|435851122|ref|YP_007312708.1| - 4.3 7.2 8.1 0.39 10.6 0.7 2.0 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger Nudix_N_2 PF14803.1 gi|435851122|ref|YP_007312708.1| - 5.1 6.8 14.5 20 4.9 2.1 3.1 1 1 1 2 2 2 0 Nudix N-terminal Prok-RING_2 PF14445.1 gi|435851122|ref|YP_007312708.1| - 5.2 7.1 9.2 4 7.4 3.1 2.6 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 zf-trcl PF13451.1 gi|435851122|ref|YP_007312708.1| - 6.5 6.4 14.3 19 4.9 2.6 3.8 2 1 1 3 3 3 0 Probable zinc-binding domain zf-C3HC4_2 PF13923.1 gi|435851122|ref|YP_007312708.1| - 7.4 6.6 9.0 7 6.7 0.7 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1595 PF12760.2 gi|435851122|ref|YP_007312708.1| - 8.2 6.3 15.5 1.4e+02 2.3 10.7 2.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|435851122|ref|YP_007312708.1| - 9.9 5.4 15.2 7.4e+02 -0.6 10.5 3.0 1 1 0 1 1 1 0 Transcription factor zinc-finger AA_kinase PF00696.23 gi|435851123|ref|YP_007312709.1| - 8.8e-11 41.8 0.0 1.4e-09 37.8 0.0 2.1 1 1 0 1 1 1 1 Amino acid kinase family Hydantoinase_A PF01968.13 gi|435851124|ref|YP_007312710.1| - 6.3e-20 71.4 3.8 3.5e-19 68.9 0.3 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.1 gi|435851124|ref|YP_007312710.1| - 0.00025 19.5 0.8 0.011 14.1 0.0 2.6 3 0 0 3 3 3 2 MutL protein Glycos_transf_1 PF00534.15 gi|435851124|ref|YP_007312710.1| - 0.0076 15.6 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Avirulence PF03377.8 gi|435851124|ref|YP_007312710.1| - 0.085 11.5 0.0 0.099 11.3 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA Hydant_A_N PF05378.8 gi|435851124|ref|YP_007312710.1| - 1.2 8.6 5.5 7 6.1 0.1 3.0 2 1 1 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.1 gi|435851124|ref|YP_007312710.1| - 9.5 6.0 6.6 30 4.4 0.1 3.7 2 2 2 4 4 4 0 Cell division protein FtsA ATP-grasp_3 PF02655.9 gi|435851125|ref|YP_007312711.1| - 5.4e-36 123.8 0.0 7.4e-36 123.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|435851125|ref|YP_007312711.1| - 1.2e-07 30.8 0.0 1.5e-05 23.9 0.0 2.5 3 0 0 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|435851125|ref|YP_007312711.1| - 8.5e-06 25.6 0.0 4.6e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|435851125|ref|YP_007312711.1| - 0.0077 15.7 0.0 0.77 9.1 0.0 2.2 2 0 0 2 2 2 2 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|435851125|ref|YP_007312711.1| - 0.0078 15.6 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus EcsB PF05975.7 gi|435851126|ref|YP_007312712.1| - 0.21 10.0 4.9 0.28 9.5 3.4 1.1 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB Ilm1 PF10311.4 gi|435851126|ref|YP_007312712.1| - 0.87 9.0 5.2 0.66 9.4 2.5 1.6 1 1 1 2 2 2 0 Increased loss of mitochondrial DNA protein 1 PrgI PF12666.2 gi|435851126|ref|YP_007312712.1| - 4.3 7.5 14.2 0.65 10.1 2.5 2.2 2 0 0 2 2 2 0 PrgI family protein YjgP_YjgQ PF03739.9 gi|435851126|ref|YP_007312712.1| - 4.6 5.8 16.7 1.9 7.1 4.8 2.0 1 1 1 2 2 2 0 Predicted permease YjgP/YjgQ family DUF4131 PF13567.1 gi|435851126|ref|YP_007312712.1| - 5.3 6.4 8.5 0.82 9.0 1.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF983 PF06170.7 gi|435851126|ref|YP_007312712.1| - 8.7 6.5 7.6 46 4.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF983) GrpE PF01025.14 gi|435851127|ref|YP_007312713.1| - 7e-58 194.8 4.3 8.4e-58 194.5 3.0 1.0 1 0 0 1 1 1 1 GrpE IncA PF04156.9 gi|435851127|ref|YP_007312713.1| - 0.068 12.7 1.7 0.082 12.4 1.2 1.2 1 0 0 1 1 1 0 IncA protein CorA PF01544.13 gi|435851127|ref|YP_007312713.1| - 0.098 11.6 1.4 0.14 11.1 1.0 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TMF_TATA_bd PF12325.3 gi|435851127|ref|YP_007312713.1| - 0.21 11.3 3.2 0.65 9.7 2.2 1.9 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding HSP70 PF00012.15 gi|435851128|ref|YP_007312714.1| - 7.6e-251 833.2 14.1 4.1e-222 738.3 5.7 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|435851128|ref|YP_007312714.1| - 3.5e-18 65.2 2.0 3.5e-18 65.2 1.4 2.4 2 1 0 2 2 2 1 MreB/Mbl protein FtsA PF14450.1 gi|435851128|ref|YP_007312714.1| - 5.7e-06 26.1 6.7 0.0041 16.9 0.8 5.0 2 2 0 2 2 2 1 Cell division protein FtsA FGGY_C PF02782.11 gi|435851128|ref|YP_007312714.1| - 0.0023 17.5 0.0 0.0046 16.5 0.0 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Hydantoinase_A PF01968.13 gi|435851128|ref|YP_007312714.1| - 0.04 13.0 0.2 0.04 13.0 0.1 3.6 4 0 0 4 4 4 0 Hydantoinase/oxoprolinase DUF3347 PF11827.3 gi|435851128|ref|YP_007312714.1| - 0.058 13.3 10.4 0.23 11.4 5.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) Vfa1 PF08432.5 gi|435851128|ref|YP_007312714.1| - 5.2 7.0 9.2 9 6.2 6.3 1.3 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 CTDII PF01556.13 gi|435851129|ref|YP_007312715.1| - 5.7e-32 109.4 1.5 1e-22 79.7 0.1 3.2 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|435851129|ref|YP_007312715.1| - 6.5e-30 102.6 4.3 1.4e-29 101.5 3.0 1.6 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|435851129|ref|YP_007312715.1| - 5.7e-17 61.5 14.0 9.7e-17 60.7 9.7 1.4 1 0 0 1 1 1 1 DnaJ central domain Prim_Zn_Ribbon PF08273.7 gi|435851129|ref|YP_007312715.1| - 0.056 13.5 14.7 0.3 11.1 1.5 3.6 3 0 0 3 3 3 0 Zinc-binding domain of primase-helicase Cytochrom_c3_2 PF14537.1 gi|435851129|ref|YP_007312715.1| - 0.44 10.9 3.2 1.1 9.7 2.2 1.7 1 0 0 1 1 1 0 Cytochrome c3 HypA PF01155.14 gi|435851129|ref|YP_007312715.1| - 0.44 10.2 8.3 2.6 7.7 0.6 2.3 1 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|435851129|ref|YP_007312715.1| - 0.93 9.8 11.7 0.7 10.2 3.0 3.0 1 1 2 3 3 3 0 Restriction alleviation protein Lar zf-C3HC4_3 PF13920.1 gi|435851129|ref|YP_007312715.1| - 1.8 8.2 6.0 31 4.3 0.1 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 gi|435851129|ref|YP_007312715.1| - 2.7 7.8 10.9 4.3 7.1 1.7 2.3 2 0 0 2 2 2 0 zinc-RING finger domain DUF1356 PF07092.7 gi|435851129|ref|YP_007312715.1| - 3 6.9 14.7 6 5.9 3.8 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1356) DZR PF12773.2 gi|435851129|ref|YP_007312715.1| - 5.1 6.9 12.9 0.34 10.7 1.5 2.3 1 1 1 2 2 2 0 Double zinc ribbon TrkA_N PF02254.13 gi|435851130|ref|YP_007312716.1| - 1.8e-49 166.5 8.4 1.5e-26 92.7 0.3 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|435851130|ref|YP_007312716.1| - 2.9e-32 110.0 0.1 1e-14 53.8 0.0 2.9 2 0 0 2 2 2 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|435851130|ref|YP_007312716.1| - 8.5e-10 38.8 5.6 0.00049 20.3 0.1 2.8 3 0 0 3 3 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|435851130|ref|YP_007312716.1| - 7.8e-09 35.7 4.1 0.00016 21.7 0.1 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|435851130|ref|YP_007312716.1| - 1.9e-08 34.1 0.3 0.00026 20.7 0.0 2.6 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|435851130|ref|YP_007312716.1| - 2.9e-06 27.5 5.6 0.031 14.6 0.2 3.5 4 1 0 4 4 2 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.9 gi|435851130|ref|YP_007312716.1| - 6.3e-06 26.2 1.0 0.026 14.4 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|435851130|ref|YP_007312716.1| - 1.1e-05 24.5 4.4 0.005 15.8 0.5 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|435851130|ref|YP_007312716.1| - 2.8e-05 24.4 2.9 0.02 15.2 0.3 3.0 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|435851130|ref|YP_007312716.1| - 0.00027 20.6 2.5 0.36 10.4 0.2 2.6 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|435851130|ref|YP_007312716.1| - 0.00046 19.6 3.4 0.27 10.6 0.3 3.0 2 1 1 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|435851130|ref|YP_007312716.1| - 0.00047 19.6 0.2 0.61 9.5 0.0 2.4 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|435851130|ref|YP_007312716.1| - 0.00068 19.6 2.0 0.11 12.4 0.2 2.4 2 0 0 2 2 2 1 NADH(P)-binding XdhC_C PF13478.1 gi|435851130|ref|YP_007312716.1| - 0.00073 19.8 0.1 0.69 10.2 0.0 2.6 2 0 0 2 2 2 1 XdhC Rossmann domain FAD_binding_3 PF01494.14 gi|435851130|ref|YP_007312716.1| - 0.0012 18.0 0.2 0.36 9.8 0.0 2.4 2 0 0 2 2 2 1 FAD binding domain NmrA PF05368.8 gi|435851130|ref|YP_007312716.1| - 0.0026 17.0 3.6 0.05 12.8 0.5 2.2 2 0 0 2 2 2 1 NmrA-like family NAD_binding_8 PF13450.1 gi|435851130|ref|YP_007312716.1| - 0.0029 17.5 0.8 0.02 14.9 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|435851130|ref|YP_007312716.1| - 0.0051 15.3 0.4 0.64 8.4 0.1 2.8 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.19 gi|435851130|ref|YP_007312716.1| - 0.0052 15.7 0.8 0.5 9.2 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Reovirus_L2 PF06016.6 gi|435851130|ref|YP_007312716.1| - 0.017 12.1 0.1 0.025 11.5 0.1 1.1 1 0 0 1 1 1 0 Reovirus core-spike protein lambda-2 (L2) ThiF PF00899.16 gi|435851130|ref|YP_007312716.1| - 0.022 14.5 4.0 4.3 7.1 0.0 3.5 2 1 1 3 3 3 0 ThiF family Ribosom_S12_S23 PF00164.20 gi|435851130|ref|YP_007312716.1| - 0.03 13.7 0.8 0.5 9.8 0.1 2.5 2 0 0 2 2 2 0 Ribosomal protein S12/S23 AlaDh_PNT_C PF01262.16 gi|435851130|ref|YP_007312716.1| - 0.034 13.7 2.5 0.52 9.8 0.0 3.1 3 1 1 4 4 4 0 Alanine dehydrogenase/PNT, C-terminal domain GARS_A PF01071.14 gi|435851130|ref|YP_007312716.1| - 0.041 13.4 0.5 0.11 12.0 0.3 1.7 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Trp_halogenase PF04820.9 gi|435851130|ref|YP_007312716.1| - 0.06 11.9 0.3 0.66 8.5 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|435851130|ref|YP_007312716.1| - 0.073 12.8 0.0 5.3 6.7 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding TrkH PF02386.11 gi|435851131|ref|YP_007312717.1| - 1.5e-57 194.7 32.5 3.8e-57 193.4 12.2 2.3 1 1 1 2 2 2 2 Cation transport protein DUF2545 PF10810.3 gi|435851131|ref|YP_007312717.1| - 0.012 15.9 1.1 0.012 15.9 0.8 3.5 3 2 0 3 3 3 0 Protein of unknown function (DUF2545) DUF2536 PF10750.4 gi|435851131|ref|YP_007312717.1| - 0.12 11.9 0.3 0.38 10.3 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2536) FAD_binding_3 PF01494.14 gi|435851132|ref|YP_007312718.1| - 8e-16 58.0 0.8 1.2e-07 31.1 0.1 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|435851132|ref|YP_007312718.1| - 7.2e-11 41.5 0.6 2.4e-07 29.9 0.1 2.3 1 1 1 2 2 2 2 FAD binding domain DAO PF01266.19 gi|435851132|ref|YP_007312718.1| - 1.3e-09 37.5 0.2 4.9e-06 25.6 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|435851132|ref|YP_007312718.1| - 2.7e-09 36.6 1.3 3.9e-08 32.8 1.1 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|435851132|ref|YP_007312718.1| - 8.9e-08 31.0 0.2 1.6e-07 30.1 0.1 1.4 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|435851132|ref|YP_007312718.1| - 3e-07 29.6 0.1 0.00015 20.7 0.2 2.7 2 1 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|435851132|ref|YP_007312718.1| - 9.8e-07 28.7 0.1 2.3e-06 27.5 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|435851132|ref|YP_007312718.1| - 1.8e-06 27.2 1.3 1.7e-05 24.0 0.9 2.1 1 1 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|435851132|ref|YP_007312718.1| - 5.2e-06 26.4 6.9 1.7e-05 24.8 4.8 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|435851132|ref|YP_007312718.1| - 1.2e-05 24.3 1.7 2.2e-05 23.4 1.2 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|435851132|ref|YP_007312718.1| - 3.1e-05 22.8 0.0 0.03 12.9 0.1 2.2 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|435851132|ref|YP_007312718.1| - 0.011 16.1 0.1 0.011 16.1 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|435851132|ref|YP_007312718.1| - 0.014 15.0 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDI PF00996.13 gi|435851132|ref|YP_007312718.1| - 0.016 13.5 0.0 0.025 12.8 0.0 1.3 1 0 0 1 1 1 0 GDP dissociation inhibitor Pyr_redox_3 PF13738.1 gi|435851132|ref|YP_007312718.1| - 0.022 14.8 0.0 0.035 14.1 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase P22_AR_C PF10548.4 gi|435851132|ref|YP_007312718.1| - 0.072 12.9 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 P22AR C-terminal domain SE PF08491.5 gi|435851132|ref|YP_007312718.1| - 1.4 7.6 3.6 0.56 8.9 0.1 2.0 3 0 0 3 3 3 0 Squalene epoxidase Fer4 PF00037.22 gi|435851133|ref|YP_007312719.1| - 3.3e-13 48.6 15.7 2e-07 30.3 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435851133|ref|YP_007312719.1| - 4.2e-10 39.8 9.9 5.5e-10 39.4 6.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851133|ref|YP_007312719.1| - 7.5e-09 36.2 8.6 7.5e-05 23.4 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|435851133|ref|YP_007312719.1| - 1.7e-08 33.9 12.2 1.4e-05 24.7 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435851133|ref|YP_007312719.1| - 3.7e-08 33.5 9.1 0.00033 20.8 1.0 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435851133|ref|YP_007312719.1| - 8.2e-07 28.7 21.7 8.5e-06 25.4 7.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435851133|ref|YP_007312719.1| - 3.6e-06 26.7 10.7 1.4e-05 24.8 7.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435851133|ref|YP_007312719.1| - 3.4e-05 23.7 12.2 0.0004 20.3 8.5 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851133|ref|YP_007312719.1| - 4.2e-05 23.2 12.7 0.0018 18.0 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435851133|ref|YP_007312719.1| - 0.00017 21.8 11.2 0.03 14.7 1.9 2.3 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|435851133|ref|YP_007312719.1| - 0.0005 20.5 11.8 0.023 15.2 0.6 2.7 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|435851133|ref|YP_007312719.1| - 0.00057 20.2 12.3 0.061 13.7 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435851133|ref|YP_007312719.1| - 0.00084 19.7 21.4 0.056 14.0 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|435851133|ref|YP_007312719.1| - 0.0018 18.5 12.9 0.12 12.7 1.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435851133|ref|YP_007312719.1| - 0.0022 18.2 12.6 0.094 13.0 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Desulfoferrod_N PF06397.7 gi|435851133|ref|YP_007312719.1| - 0.013 14.9 3.8 0.013 14.9 2.6 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Stig1 PF04885.8 gi|435851133|ref|YP_007312719.1| - 0.29 11.3 9.1 0.41 10.8 6.3 1.3 1 1 0 1 1 1 0 Stigma-specific protein, Stig1 Fer4_5 PF12801.2 gi|435851133|ref|YP_007312719.1| - 0.56 10.0 0.1 0.56 10.0 0.1 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain zf-Paramyx-P PF13008.2 gi|435851133|ref|YP_007312719.1| - 1.2 8.3 7.6 1.9 7.7 0.5 2.2 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein Fer4_19 PF06902.6 gi|435851133|ref|YP_007312719.1| - 2.5 7.9 9.1 2.6 7.9 1.0 3.1 2 2 1 3 3 3 0 Divergent 4Fe-4S mono-cluster C1_1 PF00130.17 gi|435851133|ref|YP_007312719.1| - 3.4 7.4 8.2 1.7 8.4 0.5 2.0 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) CofC PF01983.11 gi|435851134|ref|YP_007312720.1| - 1.2e-47 161.6 0.1 1.5e-47 161.4 0.1 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|435851134|ref|YP_007312720.1| - 0.00024 21.2 0.0 0.00032 20.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Radical_SAM PF04055.16 gi|435851135|ref|YP_007312721.1| - 1.6e-17 64.1 0.1 2.2e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer2 PF00111.22 gi|435851135|ref|YP_007312721.1| - 0.19 11.4 0.7 0.57 9.9 0.1 2.0 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Radical_SAM PF04055.16 gi|435851136|ref|YP_007312722.1| - 1.1e-15 58.1 0.1 1.7e-15 57.6 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|435851137|ref|YP_007312723.1| - 3e-15 56.8 0.0 5.1e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily BATS PF06968.8 gi|435851137|ref|YP_007312723.1| - 0.013 15.3 0.1 0.031 14.0 0.1 1.6 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain NAD_binding_8 PF13450.1 gi|435851138|ref|YP_007312724.1| - 2.6e-11 43.3 0.1 6.4e-11 42.1 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|435851138|ref|YP_007312724.1| - 3.1e-08 32.9 0.6 5e-05 22.3 0.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|435851138|ref|YP_007312724.1| - 7.7e-08 31.5 0.5 0.00019 20.3 0.0 3.0 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|435851138|ref|YP_007312724.1| - 9.9e-06 25.5 0.0 0.0011 18.9 0.0 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|435851138|ref|YP_007312724.1| - 6.6e-05 21.5 0.4 0.0097 14.4 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.22 gi|435851138|ref|YP_007312724.1| - 0.00056 20.2 0.4 0.0039 17.5 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|435851138|ref|YP_007312724.1| - 0.0031 16.6 0.7 0.005 15.9 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain GDI PF00996.13 gi|435851138|ref|YP_007312724.1| - 0.0035 15.7 0.0 0.66 8.2 0.0 2.1 2 0 0 2 2 2 2 GDP dissociation inhibitor Amino_oxidase PF01593.19 gi|435851138|ref|YP_007312724.1| - 0.006 15.7 0.4 0.079 12.0 0.1 2.3 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.1 gi|435851138|ref|YP_007312724.1| - 0.0093 16.0 0.1 0.075 13.0 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|435851138|ref|YP_007312724.1| - 0.022 13.8 0.4 0.049 12.7 0.1 1.7 2 0 0 2 2 2 0 Thi4 family ApbA PF02558.11 gi|435851138|ref|YP_007312724.1| - 0.04 13.3 0.3 0.072 12.5 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|435851138|ref|YP_007312724.1| - 0.058 13.1 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.17 gi|435851138|ref|YP_007312724.1| - 0.063 12.1 1.5 0.55 9.0 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|435851138|ref|YP_007312724.1| - 0.078 12.6 0.2 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|435851138|ref|YP_007312724.1| - 0.091 12.1 0.1 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GMC_oxred_N PF00732.14 gi|435851138|ref|YP_007312724.1| - 0.11 11.5 0.0 0.52 9.4 0.0 1.8 2 0 0 2 2 2 0 GMC oxidoreductase Fer4 PF00037.22 gi|435851139|ref|YP_007312725.1| - 8.3e-13 47.3 16.0 2.2e-07 30.1 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435851139|ref|YP_007312725.1| - 1.7e-10 40.3 11.5 6e-06 26.1 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435851139|ref|YP_007312725.1| - 7.5e-09 35.8 13.5 0.00014 22.1 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435851139|ref|YP_007312725.1| - 8.2e-09 35.6 13.4 2.5e-05 24.4 2.1 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435851139|ref|YP_007312725.1| - 8.8e-09 35.0 27.1 8.4e-07 28.6 10.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435851139|ref|YP_007312725.1| - 2.2e-08 33.5 15.4 0.00014 21.5 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435851139|ref|YP_007312725.1| - 3.3e-08 32.9 13.4 0.00023 20.9 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435851139|ref|YP_007312725.1| - 1.9e-07 30.8 13.9 1.7e-06 27.7 9.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851139|ref|YP_007312725.1| - 3.5e-07 30.8 13.0 0.0022 18.7 2.7 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|435851139|ref|YP_007312725.1| - 1.8e-06 28.2 15.4 0.0014 19.0 3.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435851139|ref|YP_007312725.1| - 3.2e-05 23.8 14.6 0.0012 18.7 10.3 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435851139|ref|YP_007312725.1| - 6e-05 23.3 14.4 0.02 15.2 2.4 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435851139|ref|YP_007312725.1| - 0.00021 21.5 17.6 0.014 15.8 4.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435851139|ref|YP_007312725.1| - 0.0033 17.7 14.3 0.018 15.4 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|435851139|ref|YP_007312725.1| - 0.16 12.5 16.5 0.083 13.4 3.0 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain zf-CXXC PF02008.15 gi|435851139|ref|YP_007312725.1| - 1.7 8.5 9.8 2 8.2 0.5 2.2 2 0 0 2 2 2 0 CXXC zinc finger domain c-SKI_SMAD_bind PF08782.5 gi|435851139|ref|YP_007312725.1| - 3.8 7.6 10.6 3.2 7.9 0.5 2.0 1 1 1 2 2 2 0 c-SKI Smad4 binding domain DUF91 PF01939.11 gi|435851140|ref|YP_007312726.1| - 2.3e-09 36.7 1.7 2.7e-09 36.5 0.2 1.7 1 1 0 2 2 2 1 Protein of unknown function DUF91 PDDEXK_4 PF14281.1 gi|435851140|ref|YP_007312726.1| - 0.00029 20.7 1.3 0.0003 20.7 0.2 1.6 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF1703 PF08011.6 gi|435851140|ref|YP_007312726.1| - 0.00086 19.0 0.2 0.0023 17.6 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1703) mTERF PF02536.9 gi|435851140|ref|YP_007312726.1| - 0.0062 15.1 0.1 0.0083 14.7 0.0 1.2 1 0 0 1 1 1 1 mTERF NUDIX PF00293.23 gi|435851141|ref|YP_007312727.1| - 1.6e-05 24.5 0.0 1.9e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Na_Ca_ex PF01699.19 gi|435851142|ref|YP_007312728.1| - 1.4e-57 193.2 36.5 5.2e-29 100.6 8.5 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein FKBP_C PF00254.23 gi|435851144|ref|YP_007312730.1| - 1.8e-13 50.3 0.1 8.7e-13 48.1 0.1 2.1 1 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase MCPsignal PF00015.16 gi|435851145|ref|YP_007312731.1| - 1.7e-60 204.2 58.6 3.3e-56 190.2 28.0 2.7 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Cache_1 PF02743.13 gi|435851145|ref|YP_007312731.1| - 6.8e-13 47.9 0.1 4.9e-12 45.2 0.0 2.5 1 1 1 2 2 2 1 Cache domain HAMP PF00672.20 gi|435851145|ref|YP_007312731.1| - 9.6e-07 28.8 0.1 9.6e-07 28.8 0.1 4.4 5 2 0 5 5 5 1 HAMP domain SNARE PF05739.14 gi|435851145|ref|YP_007312731.1| - 0.3 10.8 12.3 0.76 9.5 0.9 4.2 4 0 0 4 4 4 0 SNARE domain DUF948 PF06103.6 gi|435851145|ref|YP_007312731.1| - 1.6 8.6 33.2 0.4 10.5 0.9 5.4 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Cache_2 PF08269.6 gi|435851145|ref|YP_007312731.1| - 2.7 8.0 0.0 2.7 8.0 0.0 4.9 5 0 0 5 5 5 0 Cache domain HOASN PF14515.1 gi|435851145|ref|YP_007312731.1| - 4.9 7.6 13.7 0.24 11.7 2.9 3.1 3 0 0 3 3 3 0 Haem-oxygenase-associated N-terminal helices Laminin_II PF06009.7 gi|435851145|ref|YP_007312731.1| - 5 6.8 32.1 1.2 8.9 2.8 4.2 2 2 2 4 4 4 0 Laminin Domain II APG6 PF04111.7 gi|435851145|ref|YP_007312731.1| - 6.7 5.6 17.2 0.34 9.9 4.1 2.4 2 1 0 2 2 2 0 Autophagy protein Apg6 Spc7 PF08317.6 gi|435851145|ref|YP_007312731.1| - 6.9 5.2 18.1 0.41 9.2 2.7 2.7 2 1 1 3 3 3 0 Spc7 kinetochore protein SSF PF00474.12 gi|435851147|ref|YP_007312733.1| - 3.3e-60 203.8 43.1 4.6e-60 203.3 29.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF3285 PF11688.3 gi|435851147|ref|YP_007312733.1| - 7.3 6.2 9.1 1.3 8.6 0.1 3.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3285) SSF PF00474.12 gi|435851149|ref|YP_007312735.1| - 8.8e-65 218.9 41.3 1.2e-64 218.4 28.6 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2973 PF11189.3 gi|435851149|ref|YP_007312735.1| - 1 9.1 0.0 1 9.1 0.0 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF2973) Lactamase_B_3 PF13483.1 gi|435851150|ref|YP_007312736.1| - 1.6e-27 96.2 0.1 1.9e-27 95.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|435851150|ref|YP_007312736.1| - 8.9e-23 80.8 0.2 1.1e-22 80.5 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|435851150|ref|YP_007312736.1| - 4.1e-09 36.3 0.5 5.7e-09 35.8 0.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF2117 PF09890.4 gi|435851151|ref|YP_007312737.1| - 1.9e-65 220.0 1.5 1.9e-65 220.0 1.1 1.7 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.16 gi|435851151|ref|YP_007312737.1| - 0.004 15.9 0.3 0.0072 15.1 0.2 1.4 1 0 0 1 1 1 1 ATP-NAD kinase HTH_34 PF13601.1 gi|435851152|ref|YP_007312738.1| - 0.0004 20.3 0.0 0.00063 19.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|435851152|ref|YP_007312738.1| - 0.0084 15.5 0.3 0.011 15.2 0.2 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|435851152|ref|YP_007312738.1| - 0.018 14.7 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|435851152|ref|YP_007312738.1| - 0.019 14.7 0.0 0.043 13.5 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|435851152|ref|YP_007312738.1| - 0.034 14.4 0.0 0.06 13.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|435851152|ref|YP_007312738.1| - 0.12 12.0 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DDE_Tnp_ISL3 PF01610.12 gi|435851154|ref|YP_007312740.1| - 1.5e-65 221.2 6.7 2.1e-65 220.7 4.7 1.2 1 0 0 1 1 1 1 Transposase zf-ISL3 PF14690.1 gi|435851154|ref|YP_007312740.1| - 5.9e-14 51.8 2.7 1.2e-13 50.8 1.9 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Tnp_ISL3 PF13542.1 gi|435851154|ref|YP_007312740.1| - 1.2e-11 43.5 0.0 2.8e-11 42.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.1 gi|435851154|ref|YP_007312740.1| - 0.0042 16.6 0.0 0.02 14.5 0.0 2.1 3 0 0 3 3 3 1 Homeodomain-like domain UCR_14kD PF02271.11 gi|435851154|ref|YP_007312740.1| - 0.035 13.8 0.1 0.11 12.3 0.1 1.8 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase complex 14kD subunit NYN PF01936.13 gi|435851155|ref|YP_007312741.1| - 2.6e-24 86.1 0.0 3.5e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 NYN domain iPGM_N PF06415.8 gi|435851155|ref|YP_007312741.1| - 0.025 13.9 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 BPG-independent PGAM N-terminus (iPGM_N) DUF4479 PF14794.1 gi|435851155|ref|YP_007312741.1| - 0.097 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) Rhomboid PF01694.17 gi|435851157|ref|YP_007312743.1| - 2.2e-33 115.3 16.0 2.2e-33 115.3 11.1 1.6 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|435851157|ref|YP_007312743.1| - 2.2e-14 53.0 7.0 3.1e-14 52.5 4.9 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|435851157|ref|YP_007312743.1| - 0.00019 21.7 0.8 0.00019 21.7 0.5 2.6 2 1 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) Prismane PF03063.15 gi|435851158|ref|YP_007312744.1| - 2.7e-112 375.8 5.2 8e-96 321.4 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_10 PF13237.1 gi|435851158|ref|YP_007312744.1| - 3.7e-08 33.0 21.3 1.8e-06 27.6 8.2 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435851158|ref|YP_007312744.1| - 8.8e-08 32.0 10.0 8.8e-08 32.0 7.0 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435851158|ref|YP_007312744.1| - 4.6e-07 30.0 8.6 4.6e-07 30.0 6.0 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435851158|ref|YP_007312744.1| - 3e-06 27.4 13.9 0.0011 19.3 0.1 3.5 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435851158|ref|YP_007312744.1| - 7e-06 26.3 9.8 7e-06 26.3 6.8 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|435851158|ref|YP_007312744.1| - 1.1e-05 25.6 12.4 0.0058 17.0 0.7 3.1 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435851158|ref|YP_007312744.1| - 1.2e-05 25.0 7.2 1.2e-05 25.0 5.0 2.4 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851158|ref|YP_007312744.1| - 1.5e-05 25.6 6.2 0.035 14.8 0.0 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|435851158|ref|YP_007312744.1| - 4.2e-05 22.9 24.8 0.00032 20.1 1.9 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435851158|ref|YP_007312744.1| - 0.0037 17.0 2.0 0.0037 17.0 1.4 3.0 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435851158|ref|YP_007312744.1| - 0.01 15.6 2.9 0.01 15.6 2.0 3.6 3 0 0 3 3 2 0 4Fe-4S binding domain DUF4287 PF14117.1 gi|435851158|ref|YP_007312744.1| - 0.037 13.7 0.3 0.068 12.8 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) Fer4_15 PF13459.1 gi|435851158|ref|YP_007312744.1| - 0.15 12.6 7.0 4.5 7.9 0.2 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|435851158|ref|YP_007312744.1| - 0.82 10.1 26.0 0.046 14.0 1.4 3.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435851158|ref|YP_007312744.1| - 6 7.3 14.8 6.8 7.1 1.1 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain CO_dh PF02552.11 gi|435851159|ref|YP_007312745.1| - 1.4e-31 109.3 0.0 1.6e-31 109.1 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|435851159|ref|YP_007312745.1| - 0.00031 20.5 0.0 0.00042 20.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CdhC PF03598.10 gi|435851160|ref|YP_007312746.1| - 3.3e-185 615.4 0.1 4.2e-185 615.0 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit DUF4128 PF13554.1 gi|435851160|ref|YP_007312746.1| - 0.09 12.4 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage related domain of unknown function CbiA PF01656.18 gi|435851161|ref|YP_007312747.1| - 1.4e-30 106.1 0.2 1.7e-30 105.8 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|435851161|ref|YP_007312747.1| - 2.1e-11 43.5 0.3 7.1e-11 41.8 0.2 1.7 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|435851161|ref|YP_007312747.1| - 4.2e-08 32.5 0.9 3.3e-07 29.6 0.6 2.4 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|435851161|ref|YP_007312747.1| - 4e-07 30.0 0.0 3e-06 27.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|435851161|ref|YP_007312747.1| - 3.1e-05 23.7 0.4 0.00087 19.0 0.0 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|435851161|ref|YP_007312747.1| - 0.00041 20.3 0.0 0.00074 19.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Toprim PF01751.17 gi|435851161|ref|YP_007312747.1| - 0.0011 18.8 0.1 0.24 11.4 0.0 2.3 1 1 1 2 2 2 1 Toprim domain CoA_binding_3 PF13727.1 gi|435851161|ref|YP_007312747.1| - 0.0015 18.3 0.0 0.23 11.2 0.0 2.2 2 0 0 2 2 2 1 CoA-binding domain Toprim_4 PF13662.1 gi|435851161|ref|YP_007312747.1| - 0.0016 18.3 0.2 0.032 14.2 0.0 2.2 2 0 0 2 2 2 1 Toprim domain AAA_17 PF13207.1 gi|435851161|ref|YP_007312747.1| - 0.0038 18.0 0.8 0.022 15.5 0.5 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|435851161|ref|YP_007312747.1| - 0.0042 16.2 0.1 0.44 9.5 0.0 2.3 2 0 0 2 2 2 1 ATPase MipZ YhjQ PF06564.7 gi|435851161|ref|YP_007312747.1| - 0.0046 16.3 0.1 0.032 13.5 0.0 2.2 1 1 0 1 1 1 1 YhjQ protein AAA_19 PF13245.1 gi|435851161|ref|YP_007312747.1| - 0.013 15.2 0.8 0.033 13.9 0.6 1.7 1 0 0 1 1 1 0 Part of AAA domain PIF1 PF05970.9 gi|435851161|ref|YP_007312747.1| - 0.013 14.4 0.2 0.023 13.6 0.1 1.4 1 0 0 1 1 1 0 PIF1-like helicase SRP54 PF00448.17 gi|435851161|ref|YP_007312747.1| - 0.014 14.8 2.1 2.3 7.6 0.3 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|435851161|ref|YP_007312747.1| - 0.02 15.0 0.1 0.074 13.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|435851161|ref|YP_007312747.1| - 0.041 14.1 0.6 0.089 13.1 0.4 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|435851161|ref|YP_007312747.1| - 0.055 12.8 2.6 0.11 11.9 0.2 2.5 2 2 1 3 3 3 0 AAA domain NTPase_1 PF03266.10 gi|435851161|ref|YP_007312747.1| - 0.06 13.0 3.2 2.6 7.7 0.5 2.3 2 0 0 2 2 2 0 NTPase ArgK PF03308.11 gi|435851161|ref|YP_007312747.1| - 0.065 11.9 0.3 0.065 11.9 0.2 2.0 2 0 0 2 2 2 0 ArgK protein DUF2075 PF09848.4 gi|435851161|ref|YP_007312747.1| - 0.082 11.8 0.2 0.094 11.6 0.2 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF87 PF01935.12 gi|435851161|ref|YP_007312747.1| - 0.082 12.7 2.4 0.17 11.7 0.3 2.3 2 1 0 2 2 2 0 Domain of unknown function DUF87 AAA_24 PF13479.1 gi|435851161|ref|YP_007312747.1| - 0.094 12.2 0.1 0.34 10.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain CoA_binding PF02629.14 gi|435851161|ref|YP_007312747.1| - 0.14 12.7 0.2 2.8 8.5 0.0 2.6 2 1 1 3 3 3 0 CoA binding domain AAA_26 PF13500.1 gi|435851161|ref|YP_007312747.1| - 0.57 9.7 3.0 8.8 5.8 0.4 2.3 2 0 0 2 2 2 0 AAA domain CdhD PF03599.11 gi|435851162|ref|YP_007312748.1| - 2.5e-86 289.6 1.4 2.4e-79 266.6 0.2 3.1 1 1 1 2 2 2 2 CO dehydrogenase/acetyl-CoA synthase delta subunit CdhD PF03599.11 gi|435851163|ref|YP_007312749.1| - 4.3e-154 512.6 0.2 5e-154 512.4 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|435851163|ref|YP_007312749.1| - 1.8e-17 62.5 1.3 3.4e-17 61.6 0.9 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster DUF362 PF04015.7 gi|435851167|ref|YP_007312753.1| - 7.9e-23 81.0 0.0 7.1e-22 77.8 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|435851167|ref|YP_007312753.1| - 2.6e-09 36.2 4.7 2.6e-09 36.2 3.2 2.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435851167|ref|YP_007312753.1| - 3.1e-08 33.8 4.8 6.2e-08 32.8 3.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851167|ref|YP_007312753.1| - 6.3e-08 32.0 11.8 2.5e-07 30.2 2.8 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435851167|ref|YP_007312753.1| - 2.1e-07 30.6 5.4 4.2e-07 29.6 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435851167|ref|YP_007312753.1| - 1.2e-06 28.1 3.4 1.2e-06 28.1 2.4 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435851167|ref|YP_007312753.1| - 1.2e-05 25.0 4.8 3.8e-05 23.4 3.3 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435851167|ref|YP_007312753.1| - 1.4e-05 25.2 4.8 3e-05 24.1 3.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851167|ref|YP_007312753.1| - 7.6e-05 23.3 2.1 0.00057 20.5 1.5 2.2 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|435851167|ref|YP_007312753.1| - 0.00012 22.1 1.4 0.00012 22.1 1.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|435851167|ref|YP_007312753.1| - 0.00086 19.8 6.2 0.0076 16.7 4.3 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|435851167|ref|YP_007312753.1| - 0.0013 18.5 1.3 0.0037 17.1 0.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435851167|ref|YP_007312753.1| - 0.0017 18.7 5.8 0.0017 18.7 4.1 2.3 2 0 0 2 2 1 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435851167|ref|YP_007312753.1| - 0.0026 18.1 2.1 0.0026 18.1 1.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435851167|ref|YP_007312753.1| - 0.0066 16.8 2.5 0.0066 16.8 1.7 1.9 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|435851167|ref|YP_007312753.1| - 0.02 14.9 5.7 0.071 13.1 3.8 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF2088 PF09861.4 gi|435851167|ref|YP_007312753.1| - 0.073 12.0 0.4 0.12 11.3 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) Fer4_17 PF13534.1 gi|435851167|ref|YP_007312753.1| - 0.1 12.9 6.2 0.067 13.5 1.6 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF2193 PF09959.4 gi|435851168|ref|YP_007312754.1| - 1.2e-274 911.0 5.9 1.4e-274 910.9 4.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) zf-HIT PF04438.11 gi|435851168|ref|YP_007312754.1| - 0.32 10.6 4.3 0.56 9.8 3.0 1.4 1 0 0 1 1 1 0 HIT zinc finger MIP PF00230.15 gi|435851169|ref|YP_007312755.1| - 2.7e-49 167.6 19.0 3.1e-49 167.4 13.2 1.0 1 0 0 1 1 1 1 Major intrinsic protein NMD3 PF04981.8 gi|435851170|ref|YP_007312756.1| - 3.1e-55 186.8 0.3 4e-55 186.5 0.2 1.1 1 0 0 1 1 1 1 NMD3 family GFA PF04828.9 gi|435851170|ref|YP_007312756.1| - 0.16 11.9 6.0 3.5 7.6 0.0 3.3 2 1 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.6 gi|435851170|ref|YP_007312756.1| - 0.27 10.7 6.9 1.2 8.6 0.6 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|435851170|ref|YP_007312756.1| - 0.4 9.9 3.2 2.1 7.6 2.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-CCHC_5 PF14787.1 gi|435851170|ref|YP_007312756.1| - 0.94 9.0 6.7 0.089 12.2 1.0 2.0 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger DZR PF12773.2 gi|435851170|ref|YP_007312756.1| - 6.1 6.7 8.9 3.4 7.5 3.2 2.5 2 1 1 3 3 3 0 Double zinc ribbon ATP-grasp_3 PF02655.9 gi|435851171|ref|YP_007312757.1| - 3.3e-40 137.5 0.0 4.6e-40 137.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|435851171|ref|YP_007312757.1| - 1.2e-18 67.5 0.0 2.8e-18 66.3 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|435851171|ref|YP_007312757.1| - 2e-13 49.7 0.0 2e-12 46.4 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|435851171|ref|YP_007312757.1| - 1.6e-12 47.1 0.0 2.6e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.1 gi|435851171|ref|YP_007312757.1| - 3.1e-05 23.2 0.0 0.0067 15.5 0.0 2.6 2 1 0 2 2 2 2 Sugar-transfer associated ATP-grasp RimK PF08443.6 gi|435851171|ref|YP_007312757.1| - 5.3e-05 22.7 0.0 0.00017 21.1 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|435851171|ref|YP_007312757.1| - 0.0015 17.9 0.0 0.013 14.8 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.14 gi|435851171|ref|YP_007312757.1| - 0.0064 16.0 0.0 3 7.3 0.0 2.3 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|435851171|ref|YP_007312757.1| - 0.16 11.2 0.0 0.32 10.3 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain TFIIE_alpha PF02002.12 gi|435851172|ref|YP_007312758.1| - 1.8e-15 56.3 0.5 2.6e-15 55.8 0.4 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HD PF01966.17 gi|435851173|ref|YP_007312759.1| - 1.1e-12 48.0 0.8 1.8e-12 47.3 0.5 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|435851173|ref|YP_007312759.1| - 0.00013 21.3 0.6 0.012 14.9 0.0 2.3 2 1 1 3 3 3 2 HDOD domain Proteasome PF00227.21 gi|435851174|ref|YP_007312760.1| - 1e-53 181.4 0.6 1.2e-53 181.2 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF4191 PF13829.1 gi|435851174|ref|YP_007312760.1| - 0.081 12.0 0.2 0.12 11.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Beta-Casp PF10996.3 gi|435851175|ref|YP_007312761.1| - 3.8e-36 123.8 0.0 1.3e-35 122.1 0.0 1.9 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|435851175|ref|YP_007312761.1| - 2.4e-23 82.8 0.2 3.9e-23 82.1 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|435851175|ref|YP_007312761.1| - 5.7e-12 45.2 0.1 1.7e-11 43.7 0.0 1.9 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|435851175|ref|YP_007312761.1| - 2e-09 37.3 0.1 4.6e-09 36.0 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|435851175|ref|YP_007312761.1| - 4.7e-06 26.0 0.3 6.8e-05 22.3 0.1 2.9 3 0 0 3 3 3 1 KH domain KH_1 PF00013.24 gi|435851175|ref|YP_007312761.1| - 7.1e-05 22.3 2.1 0.0007 19.1 0.4 2.5 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|435851175|ref|YP_007312761.1| - 0.00088 18.8 0.0 0.002 17.7 0.0 1.6 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.1 gi|435851175|ref|YP_007312761.1| - 0.0014 18.4 0.0 0.0068 16.1 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_3 PF13014.1 gi|435851175|ref|YP_007312761.1| - 0.027 14.1 1.8 0.093 12.4 0.5 2.4 2 0 0 2 2 2 0 KH domain DUF3489 PF11994.3 gi|435851175|ref|YP_007312761.1| - 0.089 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HAD_2 PF13419.1 gi|435851176|ref|YP_007312762.1| - 1.1e-25 90.9 0.0 1.2e-25 90.7 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|435851176|ref|YP_007312762.1| - 1.4e-09 38.6 0.0 1.6e-08 35.2 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|435851176|ref|YP_007312762.1| - 1.8e-07 30.7 0.0 3e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like FtsZ_C PF12327.3 gi|435851178|ref|YP_007312764.1| - 3.2e-34 116.8 0.3 1.1e-33 115.1 0.0 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|435851178|ref|YP_007312764.1| - 1.4e-33 116.5 1.0 6.6e-33 114.3 0.7 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|435851178|ref|YP_007312764.1| - 0.091 12.5 0.0 0.091 12.5 0.0 2.8 3 1 0 3 3 3 0 ThiF family Pterin_bind PF00809.17 gi|435851179|ref|YP_007312765.1| - 3.9e-13 49.2 0.3 1.8e-11 43.7 0.2 2.4 1 1 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.11 gi|435851179|ref|YP_007312765.1| - 3.1e-09 35.8 0.1 5.2e-09 35.0 0.1 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF4346 PF14251.1 gi|435851179|ref|YP_007312765.1| - 2.4e-08 33.7 0.1 1.2e-07 31.4 0.0 2.2 2 1 1 3 3 3 1 Domain of unknown function (DUF4346) H_PPase PF03030.11 gi|435851181|ref|YP_007312767.1| - 4.2e-272 904.4 53.5 4.8e-272 904.2 37.1 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Flavi_NS4A PF01350.12 gi|435851181|ref|YP_007312767.1| - 0.11 12.0 0.1 0.11 12.0 0.1 3.5 3 0 0 3 3 3 0 Flavivirus non-structural protein NS4A ATP_bind_3 PF01171.15 gi|435851183|ref|YP_007312769.1| - 6.5e-15 55.0 0.0 1e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|435851183|ref|YP_007312769.1| - 5.9e-06 25.0 0.0 8.2e-06 24.6 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|435851183|ref|YP_007312769.1| - 1.5e-05 24.9 0.0 2.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|435851183|ref|YP_007312769.1| - 0.0016 17.3 0.0 0.0021 16.9 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|435851183|ref|YP_007312769.1| - 0.002 17.6 0.0 0.003 17.1 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ZZ PF00569.12 gi|435851183|ref|YP_007312769.1| - 0.034 13.6 0.7 0.034 13.6 0.5 3.1 3 1 0 3 3 3 0 Zinc finger, ZZ type QueC PF06508.8 gi|435851183|ref|YP_007312769.1| - 0.06 12.6 0.0 0.06 12.6 0.0 2.2 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC DUF3798 PF12683.2 gi|435851183|ref|YP_007312769.1| - 0.14 11.2 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) RecR PF02132.10 gi|435851183|ref|YP_007312769.1| - 0.26 10.7 5.5 1.7 8.1 2.2 2.5 2 0 0 2 2 2 0 RecR protein TctA PF01970.11 gi|435851184|ref|YP_007312770.1| - 2.7e-81 273.1 39.4 3.1e-81 272.9 27.3 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family UPF0444 PF15475.1 gi|435851184|ref|YP_007312770.1| - 0.039 13.9 0.1 0.092 12.8 0.0 1.6 1 0 0 1 1 1 0 Transmembrane protein C12orf23, UPF0444 CbiA PF01656.18 gi|435851185|ref|YP_007312771.1| - 1.8e-29 102.5 0.1 2.2e-29 102.2 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|435851185|ref|YP_007312771.1| - 4.2e-08 32.5 0.3 1.8e-07 30.4 0.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|435851185|ref|YP_007312771.1| - 5.2e-05 24.0 0.2 0.0001 23.1 0.1 1.8 1 1 1 2 2 2 1 AAA domain AAA_31 PF13614.1 gi|435851185|ref|YP_007312771.1| - 6.1e-05 22.9 0.0 0.00044 20.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|435851185|ref|YP_007312771.1| - 9.5e-05 21.7 0.1 0.0041 16.3 0.1 2.3 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_18 PF13238.1 gi|435851185|ref|YP_007312771.1| - 0.00011 22.5 0.0 0.0002 21.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|435851185|ref|YP_007312771.1| - 0.00016 21.3 1.8 0.0053 16.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|435851185|ref|YP_007312771.1| - 0.00033 20.3 0.1 0.001 18.7 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|435851185|ref|YP_007312771.1| - 0.001 18.7 0.1 0.0082 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|435851185|ref|YP_007312771.1| - 0.0013 18.4 0.0 0.0039 16.9 0.0 1.9 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|435851185|ref|YP_007312771.1| - 0.0015 18.5 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.17 gi|435851185|ref|YP_007312771.1| - 0.0058 16.0 0.6 0.0096 15.3 0.4 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|435851185|ref|YP_007312771.1| - 0.0092 15.4 0.0 0.016 14.6 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain MipZ PF09140.6 gi|435851185|ref|YP_007312771.1| - 0.012 14.6 0.5 0.021 13.8 0.3 1.3 1 0 0 1 1 1 0 ATPase MipZ DUF87 PF01935.12 gi|435851185|ref|YP_007312771.1| - 0.013 15.3 0.1 0.029 14.2 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF87 APS_kinase PF01583.15 gi|435851185|ref|YP_007312771.1| - 0.022 14.4 0.1 0.036 13.7 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase ArgK PF03308.11 gi|435851185|ref|YP_007312771.1| - 0.024 13.4 0.1 0.036 12.8 0.1 1.4 1 0 0 1 1 1 0 ArgK protein AAA_28 PF13521.1 gi|435851185|ref|YP_007312771.1| - 0.028 14.4 0.0 0.053 13.4 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.1 gi|435851185|ref|YP_007312771.1| - 0.036 13.6 0.0 0.054 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|435851185|ref|YP_007312771.1| - 0.047 12.8 0.0 0.064 12.4 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|435851185|ref|YP_007312771.1| - 0.056 13.5 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|435851185|ref|YP_007312771.1| - 0.064 12.5 0.1 0.33 10.2 0.2 1.8 2 0 0 2 2 2 0 YhjQ protein AAA_5 PF07728.9 gi|435851185|ref|YP_007312771.1| - 0.067 12.9 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF1860 PF08949.5 gi|435851185|ref|YP_007312771.1| - 0.076 12.6 0.3 0.15 11.6 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1860) PRK PF00485.13 gi|435851185|ref|YP_007312771.1| - 0.079 12.5 0.1 0.15 11.5 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|435851185|ref|YP_007312771.1| - 0.15 11.7 0.2 0.25 10.9 0.1 1.3 1 0 0 1 1 1 0 NACHT domain Cation_efflux PF01545.16 gi|435851186|ref|YP_007312772.1| - 7.2e-63 212.3 7.3 8e-63 212.1 5.0 1.0 1 0 0 1 1 1 1 Cation efflux family 2TM PF13239.1 gi|435851186|ref|YP_007312772.1| - 6 6.9 6.4 2.4 8.2 1.3 2.4 2 1 0 2 2 2 0 2TM domain Chorismate_synt PF01264.16 gi|435851187|ref|YP_007312773.1| - 1e-149 497.7 1.8 1.1e-149 497.6 1.2 1.0 1 0 0 1 1 1 1 Chorismate synthase PhoU PF01895.14 gi|435851188|ref|YP_007312774.1| - 8.8e-24 83.7 10.0 1.2e-17 64.1 0.6 2.8 3 0 0 3 3 3 2 PhoU domain Antitoxin-MazE PF04014.13 gi|435851188|ref|YP_007312774.1| - 4.5e-06 26.2 0.0 9.7e-06 25.1 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE SpoIIID PF12116.3 gi|435851188|ref|YP_007312774.1| - 0.12 12.2 0.7 0.35 10.8 0.1 2.0 2 0 0 2 2 2 0 Stage III sporulation protein D Aminotran_1_2 PF00155.16 gi|435851189|ref|YP_007312775.1| - 2.2e-61 207.8 0.0 2.5e-61 207.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|435851189|ref|YP_007312775.1| - 0.019 13.6 0.0 0.18 10.4 0.0 2.0 2 0 0 2 2 2 0 Allinase Cys_Met_Meta_PP PF01053.15 gi|435851189|ref|YP_007312775.1| - 0.029 12.6 0.0 0.046 12.0 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme HATPase_c PF02518.21 gi|435851190|ref|YP_007312776.1| - 1.5e-28 98.7 0.1 2.5e-28 97.9 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|435851190|ref|YP_007312776.1| - 5.7e-14 52.3 0.1 2.2e-07 31.1 0.0 2.8 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|435851190|ref|YP_007312776.1| - 2.4e-13 49.8 0.1 8.2e-13 48.1 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|435851190|ref|YP_007312776.1| - 6.9e-12 45.3 0.2 3.1e-06 27.1 0.0 3.8 3 2 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|435851190|ref|YP_007312776.1| - 8.8e-08 31.7 0.1 1.4e-05 24.7 0.0 3.0 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|435851190|ref|YP_007312776.1| - 6.9e-07 29.0 0.1 6.5e-05 22.6 0.0 3.6 5 0 0 5 5 5 1 PAS fold HATPase_c_3 PF13589.1 gi|435851190|ref|YP_007312776.1| - 0.0018 17.9 0.1 0.0039 16.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|435851190|ref|YP_007312776.1| - 0.0023 17.6 0.3 0.008 15.8 0.0 2.1 2 0 0 2 2 2 1 GHKL domain PAS_7 PF12860.2 gi|435851190|ref|YP_007312776.1| - 0.0024 17.8 0.1 0.27 11.2 0.0 3.2 3 0 0 3 3 3 1 PAS fold HATPase_c PF02518.21 gi|435851191|ref|YP_007312777.1| - 1.6e-32 111.4 0.3 4.1e-32 110.1 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|435851191|ref|YP_007312777.1| - 4.3e-22 78.4 0.0 1.7e-08 34.7 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|435851191|ref|YP_007312777.1| - 9.3e-21 73.7 0.0 8.7e-15 54.5 0.0 3.2 3 0 0 3 3 3 2 PAS fold PAS PF00989.19 gi|435851191|ref|YP_007312777.1| - 2.2e-20 72.5 0.0 2.6e-10 40.0 0.0 3.5 3 0 0 3 3 3 3 PAS fold HisKA PF00512.20 gi|435851191|ref|YP_007312777.1| - 8.2e-17 60.9 3.0 1.4e-16 60.1 0.1 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|435851191|ref|YP_007312777.1| - 1.1e-15 57.6 0.0 1.7e-09 37.6 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|435851191|ref|YP_007312777.1| - 2.3e-09 36.7 0.0 7.1e-05 22.5 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_5 PF14501.1 gi|435851191|ref|YP_007312777.1| - 2.9e-06 26.8 0.0 1.1e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 GHKL domain PAS_10 PF13596.1 gi|435851191|ref|YP_007312777.1| - 0.00013 22.1 0.0 0.052 13.8 0.0 3.1 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.2 gi|435851191|ref|YP_007312777.1| - 0.00017 21.5 0.0 0.069 13.1 0.0 3.1 2 1 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|435851191|ref|YP_007312777.1| - 0.0027 17.3 0.0 0.0088 15.6 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VASP_tetra PF08776.6 gi|435851191|ref|YP_007312777.1| - 0.022 14.0 0.4 0.86 8.9 0.0 2.6 2 1 0 2 2 2 0 VASP tetramerisation domain HATPase_c_2 PF13581.1 gi|435851191|ref|YP_007312777.1| - 0.027 14.2 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain MutS_III PF05192.13 gi|435851191|ref|YP_007312777.1| - 0.037 13.7 0.4 0.1 12.3 0.3 1.7 2 0 0 2 2 2 0 MutS domain III Lyase_1 PF00206.15 gi|435851192|ref|YP_007312778.1| - 2.5e-63 214.1 0.0 4.9e-63 213.1 0.0 1.5 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|435851192|ref|YP_007312778.1| - 8e-12 45.0 0.0 2.4e-11 43.5 0.0 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Asparaginase PF00710.15 gi|435851193|ref|YP_007312779.1| - 2.6e-89 299.1 0.0 3.2e-89 298.8 0.0 1.1 1 0 0 1 1 1 1 Asparaginase Asp_Glu_race PF01177.17 gi|435851193|ref|YP_007312779.1| - 0.00099 19.0 1.0 0.033 14.0 0.7 2.3 1 1 1 2 2 2 2 Asp/Glu/Hydantoin racemase tRNA-synt_2 PF00152.15 gi|435851194|ref|YP_007312780.1| - 5.2e-96 321.3 0.1 6.9e-96 320.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|435851194|ref|YP_007312780.1| - 4.1e-14 52.2 0.0 8.9e-14 51.1 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|435851194|ref|YP_007312780.1| - 0.00017 20.8 0.6 0.0082 15.3 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) Rib_5-P_isom_A PF06026.9 gi|435851195|ref|YP_007312781.1| - 6.7e-60 201.3 0.6 8.2e-60 201.0 0.4 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|435851195|ref|YP_007312781.1| - 3.9e-07 29.8 1.0 0.00012 21.8 0.0 2.3 1 1 0 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|435851195|ref|YP_007312781.1| - 0.083 11.7 0.1 0.13 11.1 0.1 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain TrkA_C PF02080.16 gi|435851196|ref|YP_007312782.1| - 1e-29 101.8 0.1 1.2e-13 50.3 0.0 2.7 3 0 0 3 3 3 2 TrkA-C domain PhoU PF01895.14 gi|435851196|ref|YP_007312782.1| - 1e-15 57.9 15.0 4.1e-09 36.7 4.1 2.5 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|435851196|ref|YP_007312782.1| - 0.00012 21.3 12.1 0.021 14.0 1.5 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF47 MgtE PF01769.11 gi|435851197|ref|YP_007312783.1| - 9.3e-17 61.5 10.1 1.6e-16 60.8 7.0 1.3 1 0 0 1 1 1 1 Divalent cation transporter ABC2_membrane_4 PF12730.2 gi|435851197|ref|YP_007312783.1| - 3.3 6.8 17.8 1.7 7.7 10.1 1.9 1 1 1 2 2 2 0 ABC-2 family transporter protein Ycf1 PF05758.7 gi|435851197|ref|YP_007312783.1| - 3.4 5.2 5.8 6 4.4 1.6 2.0 2 0 0 2 2 2 0 Ycf1 MgtE PF01769.11 gi|435851198|ref|YP_007312784.1| - 1.1e-20 74.3 9.9 1.1e-20 74.3 6.8 1.5 2 0 0 2 2 2 1 Divalent cation transporter SUR7 PF06687.7 gi|435851198|ref|YP_007312784.1| - 8.7 5.8 12.5 11 5.4 4.1 2.3 1 1 1 2 2 2 0 SUR7/PalI family Zeta_toxin PF06414.7 gi|435851199|ref|YP_007312785.1| - 7e-05 22.0 0.0 0.01 14.9 0.0 2.0 2 0 0 2 2 2 2 Zeta toxin AAA_33 PF13671.1 gi|435851199|ref|YP_007312785.1| - 0.011 15.6 0.0 0.16 11.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|435851199|ref|YP_007312785.1| - 0.044 14.0 0.1 0.078 13.2 0.0 1.7 1 1 0 1 1 1 0 ABC transporter Miro PF08477.8 gi|435851199|ref|YP_007312785.1| - 0.065 13.7 0.0 0.22 12.0 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein DUF3795 PF12675.2 gi|435851201|ref|YP_007312787.1| - 1.7e-08 34.4 13.5 4e-08 33.3 9.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3795) Pro-MCH PF05824.7 gi|435851201|ref|YP_007312787.1| - 0.0089 15.5 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Pro-melanin-concentrating hormone (Pro-MCH) A2L_zn_ribbon PF08792.5 gi|435851201|ref|YP_007312787.1| - 0.13 11.7 6.6 1.3 8.5 4.6 2.5 1 1 0 1 1 1 0 A2L zinc ribbon domain CorA PF01544.13 gi|435851202|ref|YP_007312788.1| - 4.1e-59 200.0 11.5 4.9e-59 199.7 8.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF1145 PF06611.7 gi|435851202|ref|YP_007312788.1| - 3.7 7.2 8.5 0.59 9.8 2.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1145) CheW PF01584.14 gi|435851203|ref|YP_007312789.1| - 8.2e-39 132.2 3.6 9.2e-39 132.0 2.5 1.0 1 0 0 1 1 1 1 CheW-like domain FKBP_C PF00254.23 gi|435851204|ref|YP_007312790.1| - 9e-26 89.7 0.0 1.2e-25 89.3 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Flavodoxin_2 PF02525.12 gi|435851205|ref|YP_007312791.1| - 2.1e-54 184.1 0.1 2.4e-54 183.8 0.1 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|435851205|ref|YP_007312791.1| - 1.8e-12 47.0 0.0 4.3e-12 45.7 0.0 1.6 1 1 0 1 1 1 1 NADPH-dependent FMN reductase ETRAMP PF09716.5 gi|435851206|ref|YP_007312792.1| - 0.077 12.9 0.0 0.085 12.8 0.0 1.0 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) AA_permease_2 PF13520.1 gi|435851207|ref|YP_007312793.1| - 1.2e-63 215.1 49.0 1.5e-63 214.8 34.0 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|435851207|ref|YP_007312793.1| - 4.1e-12 45.1 38.8 6.7e-12 44.4 26.8 1.4 1 1 0 1 1 1 1 Amino acid permease Dimeth_Pyl PF09505.5 gi|435851208|ref|YP_007312794.1| - 3.1e-285 945.6 11.2 3.4e-285 945.4 7.8 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) Antimicrobial_7 PF08102.6 gi|435851208|ref|YP_007312794.1| - 0.0059 16.5 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 Scorpion antimicrobial peptide EBV-NA1 PF02905.9 gi|435851208|ref|YP_007312794.1| - 0.093 12.2 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Epstein Barr virus nuclear antigen-1, DNA-binding domain B12-binding PF02310.14 gi|435851209|ref|YP_007312795.1| - 8.5e-26 90.2 0.2 1.5e-25 89.3 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|435851209|ref|YP_007312795.1| - 5.1e-18 64.8 0.6 8.8e-18 64.1 0.4 1.4 1 0 0 1 1 1 1 B12 binding domain Beta-lactamase2 PF13354.1 gi|435851209|ref|YP_007312795.1| - 0.064 12.7 0.1 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase enzyme family HisKA_2 PF07568.7 gi|435851210|ref|YP_007312796.1| - 8.2e-33 112.0 2.0 2.3e-32 110.6 1.4 1.9 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.21 gi|435851210|ref|YP_007312796.1| - 6.4e-12 45.1 0.3 2.1e-11 43.5 0.0 2.1 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_1 PF02743.13 gi|435851210|ref|YP_007312796.1| - 2.2e-11 43.1 0.1 1.8e-10 40.2 0.0 2.4 2 0 0 2 2 2 1 Cache domain HATPase_c_2 PF13581.1 gi|435851210|ref|YP_007312796.1| - 6.6e-10 38.8 0.1 1.8e-09 37.4 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HAMP PF00672.20 gi|435851210|ref|YP_007312796.1| - 9.6e-10 38.5 11.1 0.00027 21.0 0.1 3.8 3 1 1 4 4 4 2 HAMP domain HWE_HK PF07536.9 gi|435851210|ref|YP_007312796.1| - 0.00019 21.8 0.2 0.00058 20.2 0.1 1.9 1 0 0 1 1 1 1 HWE histidine kinase PAS_10 PF13596.1 gi|435851210|ref|YP_007312796.1| - 0.019 15.2 0.1 0.13 12.5 0.0 2.5 3 0 0 3 3 3 0 PAS domain Response_reg PF00072.19 gi|435851211|ref|YP_007312797.1| - 8.9e-21 73.9 0.5 1e-20 73.7 0.4 1.1 1 0 0 1 1 1 1 Response regulator receiver domain His_biosynth PF00977.16 gi|435851211|ref|YP_007312797.1| - 0.11 11.8 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Histidine biosynthesis protein DUF1724 PF08350.5 gi|435851212|ref|YP_007312798.1| - 3.4e-21 74.5 0.0 7.3e-21 73.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_11 PF08279.7 gi|435851212|ref|YP_007312798.1| - 0.00062 19.3 0.2 0.0013 18.2 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|435851212|ref|YP_007312798.1| - 0.001 18.7 0.2 0.002 17.7 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|435851212|ref|YP_007312798.1| - 0.0018 17.9 0.1 0.0036 16.9 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|435851212|ref|YP_007312798.1| - 0.014 15.6 0.0 0.036 14.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain DNA_gyraseB PF00204.20 gi|435851213|ref|YP_007312799.1| - 1.6e-63 213.0 2.4 2.7e-63 212.3 1.7 1.4 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|435851213|ref|YP_007312799.1| - 6.9e-31 105.7 0.1 1.4e-30 104.8 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|435851213|ref|YP_007312799.1| - 4.2e-23 81.1 0.0 1.1e-22 79.8 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|435851213|ref|YP_007312799.1| - 2e-19 69.3 0.1 4.3e-19 68.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|435851213|ref|YP_007312799.1| - 3.6e-05 23.4 0.0 9.1e-05 22.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.15 gi|435851214|ref|YP_007312800.1| - 1.8e-154 514.7 0.8 2.4e-154 514.3 0.6 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|435851214|ref|YP_007312800.1| - 7.6e-69 226.8 19.6 1.3e-16 59.6 0.4 6.6 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller SOR_SNZ PF01680.12 gi|435851215|ref|YP_007312801.1| - 5.4e-108 359.3 8.2 7.5e-108 358.8 5.7 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|435851215|ref|YP_007312801.1| - 4e-12 45.7 6.4 7.7e-08 31.7 0.6 2.4 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|435851215|ref|YP_007312801.1| - 0.0012 17.8 2.5 0.036 13.0 0.0 3.0 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.12 gi|435851215|ref|YP_007312801.1| - 0.0013 17.5 1.1 0.081 11.7 0.1 2.3 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|435851215|ref|YP_007312801.1| - 0.0046 16.0 0.1 0.078 12.0 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|435851215|ref|YP_007312801.1| - 0.017 14.3 0.4 0.017 14.3 0.3 2.2 2 0 0 2 2 2 0 Nitronate monooxygenase PcrB PF01884.12 gi|435851215|ref|YP_007312801.1| - 0.031 13.5 0.6 0.054 12.7 0.0 1.7 2 1 0 2 2 2 0 PcrB family His_biosynth PF00977.16 gi|435851215|ref|YP_007312801.1| - 0.046 12.9 0.4 0.23 10.6 0.0 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein SNO PF01174.14 gi|435851216|ref|YP_007312802.1| - 1e-54 185.0 0.1 1.2e-54 184.8 0.1 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|435851216|ref|YP_007312802.1| - 5e-12 45.6 0.1 6.6e-12 45.2 0.1 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|435851216|ref|YP_007312802.1| - 6.5e-10 38.7 0.0 1e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|435851216|ref|YP_007312802.1| - 2.2e-05 24.2 0.0 2.9e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|435851216|ref|YP_007312802.1| - 0.00012 21.5 0.1 0.00015 21.2 0.1 1.4 1 1 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.8 gi|435851216|ref|YP_007312802.1| - 0.00019 20.9 0.1 0.0021 17.5 0.1 2.2 2 1 0 2 2 2 1 Peptidase C26 DUF4066 PF13278.1 gi|435851216|ref|YP_007312802.1| - 0.0042 16.3 0.0 0.0065 15.7 0.0 1.3 1 0 0 1 1 1 1 Putative amidotransferase BPL_N PF09825.4 gi|435851216|ref|YP_007312802.1| - 0.084 11.6 0.0 0.14 10.9 0.0 1.4 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal Pyridox_oxidase PF01243.15 gi|435851217|ref|YP_007312803.1| - 1.2e-17 63.6 0.0 1.4e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|435851217|ref|YP_007312803.1| - 0.037 13.5 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF447) Pyridox_oxase_2 PF12766.2 gi|435851217|ref|YP_007312803.1| - 0.11 12.7 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase TrmB PF01978.14 gi|435851218|ref|YP_007312804.1| - 4.1e-22 77.6 0.0 8.2e-22 76.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|435851218|ref|YP_007312804.1| - 3.3e-06 26.2 0.0 0.0002 20.3 0.0 2.1 1 1 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.5 gi|435851218|ref|YP_007312804.1| - 6.1e-06 25.7 0.1 1.4e-05 24.5 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|435851218|ref|YP_007312804.1| - 0.00038 20.0 0.0 0.0007 19.2 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|435851218|ref|YP_007312804.1| - 0.00075 19.1 0.0 0.0019 17.8 0.0 1.7 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.11 gi|435851218|ref|YP_007312804.1| - 0.0012 18.8 0.3 0.01 15.9 0.0 2.4 3 1 0 3 3 3 1 Penicillinase repressor Lant_dehyd_C PF04738.8 gi|435851218|ref|YP_007312804.1| - 0.0086 14.3 0.0 0.013 13.8 0.0 1.1 1 0 0 1 1 1 1 Lantibiotic dehydratase, C terminus Rrf2 PF02082.15 gi|435851218|ref|YP_007312804.1| - 0.015 15.3 0.0 0.053 13.6 0.0 1.9 1 0 0 1 1 1 0 Transcriptional regulator HTH_9 PF08221.6 gi|435851218|ref|YP_007312804.1| - 0.021 14.6 0.0 0.18 11.6 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|435851218|ref|YP_007312804.1| - 0.05 13.3 0.1 0.18 11.6 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|435851218|ref|YP_007312804.1| - 0.052 13.8 0.0 0.17 12.2 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|435851218|ref|YP_007312804.1| - 0.092 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain NPCBM_assoc PF10633.4 gi|435851219|ref|YP_007312805.1| - 1.6e-09 37.6 0.0 0.00061 19.7 0.0 2.9 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|435851219|ref|YP_007312805.1| - 0.00053 19.9 0.4 0.014 15.4 0.0 2.8 2 1 1 3 3 3 1 CARDB DUF4366 PF14283.1 gi|435851219|ref|YP_007312805.1| - 0.0071 15.7 0.9 0.25 10.7 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4366) TRAP_beta PF05753.9 gi|435851219|ref|YP_007312805.1| - 0.051 12.7 0.2 0.14 11.3 0.1 1.8 1 1 0 1 1 1 0 Translocon-associated protein beta (TRAPB) TrbC PF04956.8 gi|435851219|ref|YP_007312805.1| - 0.076 13.0 0.4 14 5.7 0.0 2.3 2 0 0 2 2 2 0 TrbC/VIRB2 family CARDB PF07705.6 gi|435851220|ref|YP_007312806.1| - 0.0045 17.0 0.6 0.82 9.7 0.0 2.5 2 1 0 2 2 2 2 CARDB MacB_PCD PF12704.2 gi|435851220|ref|YP_007312806.1| - 0.05 13.1 2.1 1.5 8.3 0.0 2.3 2 0 0 2 2 2 0 MacB-like periplasmic core domain NPCBM_assoc PF10633.4 gi|435851220|ref|YP_007312806.1| - 0.093 12.7 0.2 16 5.6 0.1 3.4 3 1 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|435851220|ref|YP_007312806.1| - 0.097 12.7 1.2 0.27 11.3 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF11 MMPL PF03176.10 gi|435851221|ref|YP_007312807.1| - 7.9e-62 208.8 3.8 1.3e-31 109.6 0.1 2.2 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|435851221|ref|YP_007312807.1| - 1.8e-19 69.6 6.4 1.4e-09 37.6 0.3 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.14 gi|435851221|ref|YP_007312807.1| - 3.8e-17 61.0 16.2 6.3e-12 43.7 5.0 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family SecD_SecF PF02355.11 gi|435851221|ref|YP_007312807.1| - 2.4e-11 43.1 6.7 2.4e-11 43.1 4.6 2.4 2 0 0 2 2 2 1 Protein export membrane protein Patched PF02460.13 gi|435851221|ref|YP_007312807.1| - 1.5e-09 36.3 17.9 8.4e-07 27.3 3.6 2.2 2 0 0 2 2 2 2 Patched family DUF1129 PF06570.6 gi|435851221|ref|YP_007312807.1| - 2.1 7.6 11.2 5.2 6.3 0.0 3.5 2 1 0 3 3 3 0 Protein of unknown function (DUF1129) Macro PF01661.16 gi|435851222|ref|YP_007312808.1| - 1.8e-40 137.5 0.0 2.4e-40 137.1 0.0 1.2 1 0 0 1 1 1 1 Macro domain Peptidase_M20 PF01546.23 gi|435851223|ref|YP_007312809.1| - 2.2e-23 82.7 0.0 2.9e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|435851223|ref|YP_007312809.1| - 6.3e-06 25.9 0.0 1.8e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|435851223|ref|YP_007312809.1| - 0.0024 17.6 0.0 0.0043 16.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M28 DUF523 PF04463.7 gi|435851224|ref|YP_007312810.1| - 1.4e-40 138.3 0.0 2.9e-39 134.0 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|435851224|ref|YP_007312810.1| - 6e-07 29.3 0.1 1.3e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) CCG PF02754.11 gi|435851225|ref|YP_007312811.1| - 9.2e-23 80.0 0.2 1.7e-14 53.5 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|435851225|ref|YP_007312811.1| - 4.1e-09 36.3 1.7 4.1e-09 36.3 1.2 2.3 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851225|ref|YP_007312811.1| - 3e-07 31.1 3.6 3e-07 31.1 2.5 2.4 3 0 0 3 3 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|435851225|ref|YP_007312811.1| - 1.5e-06 28.4 1.3 1.5e-06 28.4 0.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435851225|ref|YP_007312811.1| - 1.6e-05 25.1 6.3 1.6e-05 25.1 4.3 2.9 4 1 0 4 4 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435851225|ref|YP_007312811.1| - 2e-05 24.2 7.4 2e-05 24.2 5.1 2.8 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435851225|ref|YP_007312811.1| - 6.1e-05 22.4 12.0 0.00011 21.6 1.6 3.7 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435851225|ref|YP_007312811.1| - 0.00012 22.4 15.2 0.022 15.1 1.3 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435851225|ref|YP_007312811.1| - 0.0017 18.1 11.6 0.01 15.6 1.2 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435851225|ref|YP_007312811.1| - 0.0022 18.2 10.8 0.0022 18.2 7.5 3.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435851225|ref|YP_007312811.1| - 0.0049 17.0 2.6 0.0049 17.0 1.8 4.2 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435851225|ref|YP_007312811.1| - 0.0094 15.8 1.9 0.0094 15.8 1.3 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|435851225|ref|YP_007312811.1| - 0.014 15.0 2.0 4.3 7.0 0.2 2.6 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|435851225|ref|YP_007312811.1| - 0.092 13.3 1.2 0.092 13.3 0.8 4.3 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435851225|ref|YP_007312811.1| - 0.7 10.3 10.3 0.2 12.0 1.8 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain ResIII PF04851.10 gi|435851226|ref|YP_007312812.1| - 6.4e-09 35.9 0.0 2e-08 34.2 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|435851226|ref|YP_007312812.1| - 3.6e-08 33.0 0.0 2.2e-07 30.5 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.1 gi|435851226|ref|YP_007312812.1| - 7.3e-08 32.5 0.2 4.6e-07 29.9 0.0 2.3 2 0 0 2 2 2 1 Helicase C-terminal domain Cna_B PF05738.8 gi|435851227|ref|YP_007312813.1| - 0.0017 18.0 1.6 0.0017 18.0 1.1 3.1 3 2 0 3 3 3 1 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|435851227|ref|YP_007312813.1| - 0.016 15.2 1.3 0.084 12.9 0.0 2.6 2 2 0 2 2 2 0 Carboxypeptidase regulatory-like domain ATP_bind_4 PF01902.12 gi|435851228|ref|YP_007312814.1| - 4.5e-69 232.1 2.0 1.6e-68 230.3 0.2 2.5 2 1 0 2 2 2 1 ATP-binding region Asn_synthase PF00733.16 gi|435851228|ref|YP_007312814.1| - 3.7e-54 183.8 0.0 2.1e-48 165.0 0.0 3.0 2 1 0 2 2 2 2 Asparagine synthase GATase_7 PF13537.1 gi|435851228|ref|YP_007312814.1| - 1.4e-16 60.3 0.0 3.8e-16 58.9 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|435851228|ref|YP_007312814.1| - 1.9e-08 34.3 0.0 8.6e-08 32.2 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain tRNA_Me_trans PF03054.11 gi|435851228|ref|YP_007312814.1| - 0.0019 16.7 0.0 0.8 8.1 0.0 2.6 3 0 0 3 3 3 2 tRNA methyl transferase QueC PF06508.8 gi|435851228|ref|YP_007312814.1| - 0.002 17.4 0.0 1.1 8.4 0.0 2.7 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|435851228|ref|YP_007312814.1| - 0.002 17.0 0.0 0.0047 15.8 0.0 1.7 1 1 0 1 1 1 1 NAD synthase GATase_2 PF00310.16 gi|435851228|ref|YP_007312814.1| - 0.051 12.2 0.0 0.92 8.1 0.0 2.3 1 1 0 2 2 2 0 Glutamine amidotransferases class-II CDP-OH_P_transf PF01066.16 gi|435851230|ref|YP_007312816.1| - 3.8e-17 62.4 12.2 6.9e-17 61.6 8.4 1.6 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Mid2 PF04478.7 gi|435851230|ref|YP_007312816.1| - 0.022 14.1 0.4 0.051 12.9 0.0 1.7 2 0 0 2 2 2 0 Mid2 like cell wall stress sensor DUF2830 PF11125.3 gi|435851230|ref|YP_007312816.1| - 0.3 10.8 1.8 13 5.5 0.8 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2830) DUF1624 PF07786.7 gi|435851230|ref|YP_007312816.1| - 3.5 6.8 10.4 41 3.3 6.6 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1624) PurS PF02700.9 gi|435851231|ref|YP_007312817.1| - 4e-26 90.7 0.1 4.3e-26 90.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF2184 PF09950.4 gi|435851231|ref|YP_007312817.1| - 0.016 14.3 0.0 0.018 14.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) Pro_CA PF00484.14 gi|435851231|ref|YP_007312817.1| - 0.056 13.4 0.0 0.061 13.3 0.0 1.0 1 0 0 1 1 1 0 Carbonic anhydrase MRP-S26 PF14943.1 gi|435851231|ref|YP_007312817.1| - 0.11 12.0 0.1 0.13 11.7 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S26 GATase_5 PF13507.1 gi|435851232|ref|YP_007312818.1| - 6.6e-44 149.7 0.0 8.1e-44 149.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|435851232|ref|YP_007312818.1| - 1.2e-07 31.3 0.0 1.8e-07 30.8 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|435851232|ref|YP_007312818.1| - 2.4e-07 30.4 0.0 5.2e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|435851232|ref|YP_007312818.1| - 4.5e-07 29.4 0.0 6.9e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|435851232|ref|YP_007312818.1| - 2.5e-06 26.8 0.0 3.7e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase SNO PF01174.14 gi|435851232|ref|YP_007312818.1| - 0.00039 20.0 0.0 0.0021 17.6 0.0 1.9 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|435851232|ref|YP_007312818.1| - 0.0036 16.7 0.1 0.0077 15.7 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 RNase_HII PF01351.13 gi|435851233|ref|YP_007312819.1| - 4.2e-48 163.6 0.0 4.8e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII T2SF PF00482.18 gi|435851234|ref|YP_007312820.1| - 8.1e-18 64.5 1.9 8.1e-18 64.5 1.3 2.9 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F B5 PF03484.10 gi|435851236|ref|YP_007312822.1| - 7e-18 64.2 0.5 3.3e-16 58.8 0.1 2.6 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|435851236|ref|YP_007312822.1| - 8.5e-14 51.3 0.0 1.5e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|435851236|ref|YP_007312822.1| - 0.023 13.9 0.0 0.051 12.7 0.0 1.6 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) Gly_radical PF01228.16 gi|435851237|ref|YP_007312823.1| - 0.091 13.1 0.0 0.1 12.9 0.0 1.1 1 0 0 1 1 1 0 Glycine radical NTP_transf_2 PF01909.18 gi|435851238|ref|YP_007312824.1| - 1.4e-15 57.3 0.1 1.6e-15 57.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|435851238|ref|YP_007312824.1| - 0.0021 18.0 0.0 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.8 gi|435851238|ref|YP_007312824.1| - 0.081 12.5 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF86 PF01934.12 gi|435851239|ref|YP_007312825.1| - 3.1e-23 81.6 0.1 4.6e-23 81.1 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF86 FlaC_arch PF05377.6 gi|435851239|ref|YP_007312825.1| - 0.13 12.1 0.2 0.61 10.0 0.0 2.1 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) SIR2 PF02146.12 gi|435851241|ref|YP_007312827.1| - 3.7e-54 183.1 0.0 4.5e-54 182.8 0.0 1.1 1 0 0 1 1 1 1 Sir2 family DZR PF12773.2 gi|435851241|ref|YP_007312827.1| - 0.044 13.5 0.1 0.077 12.8 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon FYVE_2 PF02318.11 gi|435851241|ref|YP_007312827.1| - 0.11 12.3 0.7 2.9 7.8 0.5 2.1 1 1 0 1 1 1 0 FYVE-type zinc finger HypA PF01155.14 gi|435851241|ref|YP_007312827.1| - 0.13 11.9 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Sif PF06767.6 gi|435851241|ref|YP_007312827.1| - 0.14 10.9 0.0 0.25 10.0 0.0 1.3 1 0 0 1 1 1 0 Sif protein Disaggr_repeat PF06848.6 gi|435851243|ref|YP_007312829.1| - 2.2e-69 232.5 3.4 2.2e-69 232.5 2.3 2.1 2 0 0 2 2 2 1 Disaggregatase related repeat TGFb_propeptide PF00688.13 gi|435851243|ref|YP_007312829.1| - 0.00047 19.5 0.0 0.13 11.5 0.0 2.2 2 0 0 2 2 2 2 TGF-beta propeptide Flavodoxin_NdrI PF07972.6 gi|435851243|ref|YP_007312829.1| - 0.075 12.9 6.4 25 4.8 0.0 5.1 5 1 1 6 6 6 0 NrdI Flavodoxin like P-II PF00543.17 gi|435851244|ref|YP_007312830.1| - 1.3e-34 118.7 0.7 1.4e-34 118.5 0.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.16 gi|435851245|ref|YP_007312831.1| - 2e-127 424.9 42.4 2.3e-127 424.8 29.4 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family CS PF04969.11 gi|435851246|ref|YP_007312832.1| - 0.059 13.9 0.0 0.092 13.2 0.0 1.3 1 0 0 1 1 1 0 CS domain UPF0047 PF01894.12 gi|435851247|ref|YP_007312833.1| - 2.3e-41 140.2 0.0 2.6e-41 140.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 ACT PF01842.20 gi|435851247|ref|YP_007312833.1| - 0.058 12.8 0.0 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 ACT domain MarR_2 PF12802.2 gi|435851248|ref|YP_007312834.1| - 0.00077 19.0 0.0 0.00085 18.9 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|435851248|ref|YP_007312834.1| - 0.0014 17.9 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|435851248|ref|YP_007312834.1| - 0.0021 17.5 0.0 0.0023 17.4 0.0 1.0 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|435851248|ref|YP_007312834.1| - 0.006 16.8 0.0 0.0063 16.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|435851248|ref|YP_007312834.1| - 0.0063 16.0 0.0 0.0073 15.8 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|435851248|ref|YP_007312834.1| - 0.0071 16.0 0.2 0.013 15.2 0.1 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Retro_M PF02813.9 gi|435851248|ref|YP_007312834.1| - 0.0072 16.4 0.1 0.014 15.4 0.1 1.6 1 1 0 1 1 1 1 Retroviral M domain z-alpha PF02295.12 gi|435851248|ref|YP_007312834.1| - 0.03 14.1 0.0 0.036 13.8 0.0 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain Fe_dep_repress PF01325.14 gi|435851248|ref|YP_007312834.1| - 0.043 13.7 0.0 0.056 13.3 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|435851248|ref|YP_007312834.1| - 0.075 13.1 0.0 0.089 12.9 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator DUF3783 PF12646.2 gi|435851248|ref|YP_007312834.1| - 0.092 12.5 0.0 0.55 10.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) HHH_5 PF14520.1 gi|435851248|ref|YP_007312834.1| - 0.094 12.9 0.1 0.13 12.4 0.0 1.3 1 1 0 1 1 1 0 Helix-hairpin-helix domain PAX PF00292.13 gi|435851248|ref|YP_007312834.1| - 0.13 12.0 0.0 0.14 11.8 0.0 1.0 1 0 0 1 1 1 0 'Paired box' domain HTH_36 PF13730.1 gi|435851248|ref|YP_007312834.1| - 0.14 12.3 0.1 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain NicO PF03824.11 gi|435851250|ref|YP_007312836.1| - 1.2e-23 83.8 23.2 8.4e-15 54.8 6.8 2.0 1 1 1 2 2 2 2 High-affinity nickel-transport protein DsbD_2 PF13386.1 gi|435851250|ref|YP_007312836.1| - 8.2e-09 35.4 12.7 5.8e-08 32.7 8.6 2.3 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.10 gi|435851250|ref|YP_007312836.1| - 4.2e-07 29.7 16.9 8.1e-07 28.8 11.4 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF3754 PF12576.3 gi|435851250|ref|YP_007312836.1| - 0.0011 18.6 0.2 0.0032 17.1 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3754) DUF2910 PF11139.3 gi|435851250|ref|YP_007312836.1| - 0.014 14.5 16.8 0.39 9.8 5.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2910) RseC_MucC PF04246.7 gi|435851250|ref|YP_007312836.1| - 0.095 12.2 0.1 0.095 12.2 0.0 2.6 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC MscS_TM PF12794.2 gi|435851250|ref|YP_007312836.1| - 0.11 11.0 4.6 0.13 10.8 0.4 2.2 1 1 1 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 DUF4131 PF13567.1 gi|435851250|ref|YP_007312836.1| - 0.2 11.0 6.3 0.88 8.9 0.0 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF202 PF02656.10 gi|435851250|ref|YP_007312836.1| - 1.6 9.0 13.1 8.8 6.6 2.3 3.5 2 2 0 2 2 2 0 Domain of unknown function (DUF202) Tetraspannin PF00335.15 gi|435851250|ref|YP_007312836.1| - 6.3 6.0 15.5 0.46 9.7 4.9 2.9 1 1 1 2 2 2 0 Tetraspanin family Cupin_2 PF07883.6 gi|435851251|ref|YP_007312837.1| - 5.1e-15 54.7 0.0 7.1e-15 54.2 0.0 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|435851251|ref|YP_007312837.1| - 0.00023 20.6 0.0 0.00029 20.3 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|435851251|ref|YP_007312837.1| - 0.0045 16.6 0.0 0.0056 16.3 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain KduI PF04962.7 gi|435851251|ref|YP_007312837.1| - 0.0059 15.7 0.0 0.0064 15.6 0.0 1.2 1 0 0 1 1 1 1 KduI/IolB family MannoseP_isomer PF01050.13 gi|435851251|ref|YP_007312837.1| - 0.0087 15.6 0.1 0.01 15.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Pirin_C PF05726.8 gi|435851251|ref|YP_007312837.1| - 0.13 12.3 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Prismane PF03063.15 gi|435851252|ref|YP_007312838.1| - 9.2e-175 581.8 0.0 1e-174 581.7 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family HTH_42 PF06224.7 gi|435851254|ref|YP_007312840.1| - 3.1e-69 233.8 1.1 3.5e-69 233.6 0.7 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1638 PF07796.6 gi|435851255|ref|YP_007312841.1| - 9.3e-39 132.7 0.0 1.2e-38 132.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) TetR_N PF00440.18 gi|435851256|ref|YP_007312842.1| - 1.6e-10 40.4 0.0 2.6e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.7 gi|435851256|ref|YP_007312842.1| - 0.0017 17.8 0.0 0.0035 16.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Terminase_5 PF06056.7 gi|435851256|ref|YP_007312842.1| - 0.0087 15.5 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.1 gi|435851256|ref|YP_007312842.1| - 0.06 12.8 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|435851256|ref|YP_007312842.1| - 0.07 12.8 0.1 0.27 10.9 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain LexA_DNA_bind PF01726.11 gi|435851256|ref|YP_007312842.1| - 0.079 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain AAA_13 PF13166.1 gi|435851257|ref|YP_007312843.1| - 3.5e-152 508.3 54.6 4e-152 508.2 37.9 1.0 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|435851257|ref|YP_007312843.1| - 0.00084 19.3 61.3 0.0011 19.0 19.7 3.4 2 1 1 3 3 3 2 AAA domain ABC_tran PF00005.22 gi|435851257|ref|YP_007312843.1| - 0.0073 16.6 4.9 0.043 14.1 1.0 3.0 2 1 0 2 2 2 1 ABC transporter DUF4163 PF13739.1 gi|435851257|ref|YP_007312843.1| - 0.02 15.6 4.8 0.02 15.6 3.3 5.1 1 1 5 6 6 6 0 Domain of unknown function (DUF4163) SbcCD_C PF13558.1 gi|435851257|ref|YP_007312843.1| - 0.021 14.7 0.0 0.052 13.4 0.0 1.7 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|435851257|ref|YP_007312843.1| - 0.023 13.9 21.8 0.21 10.7 0.0 2.8 3 1 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|435851257|ref|YP_007312843.1| - 0.055 13.6 0.6 0.36 10.9 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|435851257|ref|YP_007312843.1| - 1.3 9.8 5.5 96 3.8 3.9 3.9 1 1 0 1 1 1 0 AAA domain FlpD PF02662.11 gi|435851258|ref|YP_007312844.1| - 1.6e-49 166.6 4.7 2.4e-49 166.1 0.1 3.3 4 0 0 4 4 3 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|435851258|ref|YP_007312844.1| - 8.7e-16 56.7 55.0 1.1e-08 34.2 2.8 5.7 6 1 0 6 6 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435851258|ref|YP_007312844.1| - 2.4e-15 56.0 34.3 6.6e-08 32.2 6.9 4.7 4 1 0 4 4 4 3 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|435851258|ref|YP_007312844.1| - 1.1e-13 51.5 2.7 1e-10 41.8 1.4 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.2 gi|435851258|ref|YP_007312844.1| - 3.9e-13 49.5 43.6 9.9e-08 32.2 8.8 5.1 3 2 4 7 7 7 5 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435851258|ref|YP_007312844.1| - 8.4e-12 44.4 59.5 3.4e-05 23.4 2.0 6.1 7 0 0 7 7 5 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435851258|ref|YP_007312844.1| - 5.2e-11 42.2 50.7 3.4e-07 30.0 8.6 5.7 6 1 0 6 6 5 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851258|ref|YP_007312844.1| - 1.7e-10 40.1 48.4 2.6e-05 23.8 2.0 5.8 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435851258|ref|YP_007312844.1| - 1.8e-09 37.7 42.5 2.8e-07 30.6 9.2 4.4 4 1 2 6 6 5 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435851258|ref|YP_007312844.1| - 2.4e-08 34.4 21.7 0.011 16.2 0.2 4.8 4 0 0 4 4 4 3 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|435851258|ref|YP_007312844.1| - 2.8e-08 33.6 36.3 0.00088 19.2 8.2 4.8 3 2 3 6 6 6 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851258|ref|YP_007312844.1| - 8.5e-08 32.8 35.0 0.0011 19.6 0.1 5.1 5 1 0 5 5 4 3 4Fe-4S double cluster binding domain NAD_binding_8 PF13450.1 gi|435851258|ref|YP_007312844.1| - 4.1e-07 29.9 0.0 9.4e-07 28.7 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_17 PF13534.1 gi|435851258|ref|YP_007312844.1| - 5.4e-07 29.8 29.7 0.0023 18.2 5.2 4.6 4 1 0 4 4 3 3 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|435851258|ref|YP_007312844.1| - 7.7e-07 28.2 0.7 1.4e-06 27.4 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|435851258|ref|YP_007312844.1| - 9.2e-07 28.0 0.3 1.6e-05 23.9 0.1 2.4 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|435851258|ref|YP_007312844.1| - 2e-06 28.1 2.2 5.4e-06 26.7 0.3 2.6 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|435851258|ref|YP_007312844.1| - 3e-06 26.3 0.3 6.2e-05 22.0 0.6 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|435851258|ref|YP_007312844.1| - 1.5e-05 24.2 0.1 2.5e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|435851258|ref|YP_007312844.1| - 6.8e-05 21.5 0.6 0.00011 20.7 0.4 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|435851258|ref|YP_007312844.1| - 0.00025 20.2 0.5 0.00052 19.1 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|435851258|ref|YP_007312844.1| - 0.00033 20.7 0.6 0.0015 18.5 0.2 2.1 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_18 PF13746.1 gi|435851258|ref|YP_007312844.1| - 0.00094 19.5 40.7 0.003 17.9 0.3 5.4 5 1 1 6 6 4 3 4Fe-4S dicluster domain NAD_binding_7 PF13241.1 gi|435851258|ref|YP_007312844.1| - 0.0018 18.4 0.2 0.011 15.9 0.0 2.4 3 1 0 3 3 1 1 Putative NAD(P)-binding Thi4 PF01946.12 gi|435851258|ref|YP_007312844.1| - 0.0019 17.3 0.1 0.005 15.9 0.1 1.6 1 0 0 1 1 1 1 Thi4 family Fer4_4 PF12800.2 gi|435851258|ref|YP_007312844.1| - 0.013 15.8 3.0 0.013 15.8 2.1 6.0 6 0 0 6 6 4 0 4Fe-4S binding domain K_oxygenase PF13434.1 gi|435851258|ref|YP_007312844.1| - 0.013 14.4 0.1 5.5 5.8 0.0 2.7 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_13 PF13370.1 gi|435851258|ref|YP_007312844.1| - 0.03 14.7 29.4 0.18 12.2 1.1 4.5 4 0 0 4 4 4 0 4Fe-4S single cluster domain AlaDh_PNT_C PF01262.16 gi|435851258|ref|YP_007312844.1| - 0.042 13.4 0.0 0.077 12.5 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|435851258|ref|YP_007312844.1| - 0.059 13.1 0.0 2.4 7.9 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|435851258|ref|YP_007312844.1| - 0.072 12.7 0.5 0.17 11.5 0.3 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|435851258|ref|YP_007312844.1| - 0.13 10.9 0.6 0.45 9.0 0.3 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|435851258|ref|YP_007312844.1| - 0.18 10.7 0.3 0.27 10.1 0.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Fer4_3 PF12798.2 gi|435851258|ref|YP_007312844.1| - 1.1 9.9 65.8 0.062 13.8 4.2 7.0 7 0 0 7 7 6 0 4Fe-4S binding domain Fer4 PF00037.22 gi|435851259|ref|YP_007312845.1| - 3.6e-38 127.6 68.5 3.1e-07 29.6 1.4 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435851259|ref|YP_007312845.1| - 1.2e-33 115.2 57.0 6.9e-11 42.3 4.4 4.8 3 1 3 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435851259|ref|YP_007312845.1| - 1.1e-28 98.8 62.1 1.8e-08 34.0 5.7 6.9 4 3 4 8 8 8 8 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435851259|ref|YP_007312845.1| - 3.3e-26 89.9 75.4 0.00016 21.3 2.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435851259|ref|YP_007312845.1| - 3.9e-24 84.6 63.8 2.1e-06 27.9 6.6 6.0 2 1 6 8 8 8 8 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851259|ref|YP_007312845.1| - 6.8e-24 82.3 68.7 0.0001 21.9 1.8 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435851259|ref|YP_007312845.1| - 3.4e-23 81.2 58.9 1.4e-06 28.0 4.2 5.8 3 2 3 6 6 6 6 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851259|ref|YP_007312845.1| - 6.2e-18 65.3 55.5 0.00012 22.7 5.4 6.8 4 3 2 6 6 6 5 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|435851259|ref|YP_007312845.1| - 1.4e-17 63.4 60.0 5.5e-07 29.5 4.6 5.4 1 1 6 7 7 7 7 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435851259|ref|YP_007312845.1| - 1.3e-10 41.4 60.8 0.00074 19.8 5.9 7.2 2 2 6 8 8 8 6 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435851259|ref|YP_007312845.1| - 6.3e-10 39.4 59.7 0.052 14.1 0.5 8.0 6 2 2 8 8 8 5 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|435851259|ref|YP_007312845.1| - 5.7e-09 35.5 77.6 0.016 15.4 1.6 8.2 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435851259|ref|YP_007312845.1| - 1.3e-06 28.6 61.1 0.018 15.4 0.2 8.2 6 2 2 8 8 8 5 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435851259|ref|YP_007312845.1| - 1.6e-06 28.2 92.9 0.069 13.7 4.1 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_11 PF13247.1 gi|435851259|ref|YP_007312845.1| - 2.5e-06 27.2 38.3 0.0064 16.3 3.8 5.4 1 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435851259|ref|YP_007312845.1| - 3.8e-06 27.1 67.2 0.17 12.2 0.9 8.3 7 1 1 8 8 8 5 4Fe-4S single cluster domain GatB_N PF02934.10 gi|435851260|ref|YP_007312846.1| - 1.3e-70 237.5 0.0 1.7e-70 237.1 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|435851260|ref|YP_007312846.1| - 1.1e-17 64.1 0.0 2e-17 63.2 0.0 1.5 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|435851260|ref|YP_007312846.1| - 1.6e-17 63.4 0.0 4.5e-17 61.9 0.0 1.8 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|435851260|ref|YP_007312846.1| - 0.0001 22.1 0.3 0.00027 20.8 0.2 1.7 1 0 0 1 1 1 1 Yqey-like protein PD40 PF07676.7 gi|435851261|ref|YP_007312847.1| - 0.0069 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 WD40-like Beta Propeller Repeat OppC_N PF12911.2 gi|435851261|ref|YP_007312847.1| - 0.29 10.5 1.4 12 5.3 0.5 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C CPSase_sm_chain PF00988.17 gi|435851262|ref|YP_007312848.1| - 7e-49 164.6 0.0 1.4e-48 163.6 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|435851262|ref|YP_007312848.1| - 7.3e-40 136.4 0.0 1.1e-39 135.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|435851262|ref|YP_007312848.1| - 6.4e-06 25.7 0.2 0.00096 18.6 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 CPSase_L_D2 PF02786.12 gi|435851263|ref|YP_007312849.1| - 9e-108 358.3 0.7 7.7e-71 237.7 0.1 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|435851263|ref|YP_007312849.1| - 7.4e-47 158.0 0.0 7.1e-23 80.8 0.0 3.4 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|435851263|ref|YP_007312849.1| - 1.2e-43 147.8 0.0 2.9e-43 146.5 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|435851263|ref|YP_007312849.1| - 2.7e-39 134.8 0.0 2.6e-18 66.4 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|435851263|ref|YP_007312849.1| - 3.7e-26 91.6 0.0 1.1e-10 40.8 0.0 3.8 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|435851263|ref|YP_007312849.1| - 9.7e-24 83.1 1.1 2.5e-22 78.6 0.1 3.6 4 0 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.17 gi|435851263|ref|YP_007312849.1| - 3.4e-17 62.3 0.0 2.3e-08 33.5 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|435851263|ref|YP_007312849.1| - 4.5e-17 62.1 0.0 2.9e-07 30.0 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|435851263|ref|YP_007312849.1| - 1.3e-14 54.4 0.3 1.5e-06 28.1 0.1 2.5 2 0 0 2 2 2 2 ATP-grasp domain B12-binding PF02310.14 gi|435851263|ref|YP_007312849.1| - 0.0057 16.5 0.0 0.63 9.9 0.0 3.3 3 0 0 3 3 3 1 B12 binding domain ATP-grasp_5 PF13549.1 gi|435851263|ref|YP_007312849.1| - 0.0072 15.5 0.0 0.087 12.0 0.0 2.5 2 0 0 2 2 2 1 ATP-grasp domain MerR-DNA-bind PF09278.6 gi|435851263|ref|YP_007312849.1| - 0.07 13.5 0.8 2 8.8 0.0 3.3 5 0 0 5 5 3 0 MerR, DNA binding Arginosuc_synth PF00764.14 gi|435851264|ref|YP_007312850.1| - 7.3e-176 584.9 0.0 8.3e-176 584.7 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.8 gi|435851264|ref|YP_007312850.1| - 0.00042 19.6 0.0 0.0012 18.2 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|435851264|ref|YP_007312850.1| - 0.00046 19.7 0.0 0.00073 19.1 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|435851264|ref|YP_007312850.1| - 0.0022 16.9 0.0 0.0041 16.0 0.0 1.5 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|435851264|ref|YP_007312850.1| - 0.13 10.7 0.0 0.22 10.0 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase Reticulon PF02453.12 gi|435851265|ref|YP_007312851.1| - 0.028 14.0 0.3 0.029 13.9 0.2 1.0 1 0 0 1 1 1 0 Reticulon DctQ PF04290.7 gi|435851265|ref|YP_007312851.1| - 0.27 10.9 4.9 0.32 10.7 3.4 1.0 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component RELT PF12606.3 gi|435851266|ref|YP_007312852.1| - 0.88 8.7 3.0 2.2 7.4 0.0 2.3 2 0 0 2 2 2 0 Tumour necrosis factor receptor superfamily member 19 Cys_Met_Meta_PP PF01053.15 gi|435851267|ref|YP_007312853.1| - 5.8e-144 479.1 0.0 6.5e-144 478.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|435851267|ref|YP_007312853.1| - 3.1e-14 52.8 0.1 7e-14 51.6 0.1 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|435851267|ref|YP_007312853.1| - 2.2e-05 23.4 0.2 4.1e-05 22.4 0.2 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|435851267|ref|YP_007312853.1| - 3.2e-05 23.0 0.0 5.3e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|435851267|ref|YP_007312853.1| - 0.00045 19.4 0.0 0.00099 18.3 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Met_gamma_lyase PF06838.6 gi|435851267|ref|YP_007312853.1| - 0.0032 15.8 0.1 0.93 7.7 0.0 2.2 2 0 0 2 2 2 2 Methionine gamma-lyase GDC-P PF02347.11 gi|435851267|ref|YP_007312853.1| - 0.006 15.3 0.0 0.0085 14.8 0.0 1.1 1 0 0 1 1 1 1 Glycine cleavage system P-protein ADH_zinc_N PF00107.21 gi|435851267|ref|YP_007312853.1| - 0.076 12.5 0.1 3.1 7.3 0.0 2.5 1 1 1 2 2 2 0 Zinc-binding dehydrogenase CBS PF00571.23 gi|435851268|ref|YP_007312854.1| - 9.6e-28 95.7 0.1 1.9e-12 46.7 0.0 2.5 2 0 0 2 2 2 2 CBS domain Abhydrolase_1 PF00561.15 gi|435851268|ref|YP_007312854.1| - 2.2e-26 92.8 0.0 3.3e-26 92.2 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|435851268|ref|YP_007312854.1| - 6.9e-10 39.1 0.0 1.1e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|435851268|ref|YP_007312854.1| - 0.0013 18.1 0.0 0.0022 17.4 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Abhydrolase_5 PF12695.2 gi|435851268|ref|YP_007312854.1| - 0.0016 18.2 0.0 0.0092 15.7 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Response_reg PF00072.19 gi|435851269|ref|YP_007312855.1| - 8.5e-28 96.6 0.5 2.7e-27 94.9 0.4 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|435851269|ref|YP_007312855.1| - 3.5e-27 94.8 0.2 1.1e-13 51.4 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|435851269|ref|YP_007312855.1| - 6.9e-21 74.0 0.2 1.8e-20 72.7 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|435851269|ref|YP_007312855.1| - 1.2e-14 54.2 0.0 8.8e-09 35.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|435851269|ref|YP_007312855.1| - 6.6e-14 51.6 0.0 9.6e-06 25.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|435851269|ref|YP_007312855.1| - 9.7e-11 41.6 0.0 1.5e-05 24.9 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|435851269|ref|YP_007312855.1| - 1.9e-08 33.8 0.1 0.00077 19.2 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|435851269|ref|YP_007312855.1| - 0.00046 20.1 0.0 11 6.1 0.0 3.6 3 1 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|435851269|ref|YP_007312855.1| - 0.0093 15.7 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|435851269|ref|YP_007312855.1| - 0.06 13.3 0.0 0.18 11.7 0.0 1.8 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain GDE_C PF06202.9 gi|435851270|ref|YP_007312856.1| - 1.7e-130 435.0 0.0 2.2e-130 434.7 0.0 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|435851270|ref|YP_007312856.1| - 5e-71 238.4 0.0 7.8e-71 237.8 0.0 1.3 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Bac_rhamnosid PF05592.6 gi|435851270|ref|YP_007312856.1| - 6.7e-07 27.8 0.3 1.5e-06 26.7 0.2 1.5 2 0 0 2 2 2 1 Bacterial alpha-L-rhamnosidase DUF608 PF04685.8 gi|435851270|ref|YP_007312856.1| - 8.3e-06 24.7 1.3 1.3e-05 24.0 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Glyco_hydro_100 PF12899.2 gi|435851270|ref|YP_007312856.1| - 1.8e-05 23.3 0.0 0.086 11.2 0.0 2.2 2 0 0 2 2 2 2 Alkaline and neutral invertase Trehalase PF01204.13 gi|435851270|ref|YP_007312856.1| - 0.043 12.4 0.0 0.065 11.8 0.0 1.2 1 0 0 1 1 1 0 Trehalase Glyco_hydro_15 PF00723.16 gi|435851271|ref|YP_007312857.1| - 6.2e-16 57.9 0.0 2.8e-09 36.0 0.0 3.4 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 Prenyltrans_2 PF13249.1 gi|435851271|ref|YP_007312857.1| - 0.049 14.0 1.4 0.65 10.4 0.9 2.6 1 1 1 2 2 2 0 Prenyltransferase-like V4R PF02830.13 gi|435851272|ref|YP_007312858.1| - 6.4e-16 57.9 0.1 1.1e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 V4R domain ACT_4 PF13291.1 gi|435851272|ref|YP_007312858.1| - 0.04 14.2 0.0 0.093 13.0 0.0 1.6 1 0 0 1 1 1 0 ACT domain ACT PF01842.20 gi|435851272|ref|YP_007312858.1| - 0.11 11.9 0.0 0.28 10.7 0.0 1.7 1 0 0 1 1 1 0 ACT domain Glyco_hydro_57 PF03065.10 gi|435851273|ref|YP_007312859.1| - 1.9e-69 234.2 0.8 8.9e-69 232.0 0.5 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|435851273|ref|YP_007312859.1| - 1.3e-05 24.7 0.0 2.2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.10 gi|435851274|ref|YP_007312860.1| - 3.5e-41 141.3 0.0 9.2e-40 136.6 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|435851274|ref|YP_007312860.1| - 0.015 14.9 0.0 0.048 13.2 0.0 1.7 1 1 1 2 2 2 0 Polysaccharide deacetylase Glycogen_syn PF05693.8 gi|435851275|ref|YP_007312861.1| - 8.6e-17 60.6 0.1 3.9e-08 32.0 0.0 2.9 2 1 0 2 2 2 2 Glycogen synthase Glycos_transf_1 PF00534.15 gi|435851275|ref|YP_007312861.1| - 0.00053 19.4 0.1 0.0064 15.9 0.0 2.6 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|435851275|ref|YP_007312861.1| - 0.11 12.0 0.2 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 Starch synthase catalytic domain GalP_UDP_transf PF01087.17 gi|435851276|ref|YP_007312862.1| - 4e-13 49.8 0.0 1.3e-12 48.1 0.0 1.9 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain HIT PF01230.18 gi|435851276|ref|YP_007312862.1| - 7.5e-09 36.0 0.0 0.0066 16.9 0.0 2.4 2 0 0 2 2 2 2 HIT domain GalP_UDP_tr_C PF02744.12 gi|435851276|ref|YP_007312862.1| - 1.1e-07 31.5 0.0 3.9e-07 29.7 0.0 2.1 2 1 0 2 2 2 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.3 gi|435851276|ref|YP_007312862.1| - 3.7e-05 23.9 0.3 0.0055 16.9 0.1 2.3 2 0 0 2 2 2 2 Scavenger mRNA decapping enzyme C-term binding Glycos_transf_1 PF00534.15 gi|435851277|ref|YP_007312863.1| - 5.2e-30 104.1 0.0 1e-29 103.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|435851277|ref|YP_007312863.1| - 7.7e-16 58.6 0.0 1.4e-15 57.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|435851277|ref|YP_007312863.1| - 1.1e-14 54.6 0.0 2.6e-14 53.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|435851277|ref|YP_007312863.1| - 2.8e-14 53.2 1.6 6.7e-13 48.6 1.1 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|435851277|ref|YP_007312863.1| - 4.7e-14 52.4 0.3 9.4e-14 51.5 0.2 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|435851277|ref|YP_007312863.1| - 2.6e-07 30.5 0.0 5.3e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|435851277|ref|YP_007312863.1| - 0.0097 16.1 0.0 0.021 15.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 NIF3 PF01784.13 gi|435851279|ref|YP_007312865.1| - 3.7e-55 187.1 0.0 4.6e-55 186.8 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) KaiC PF06745.8 gi|435851280|ref|YP_007312866.1| - 6.5e-48 162.8 0.0 9.1e-48 162.3 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|435851280|ref|YP_007312866.1| - 4.1e-09 36.1 0.0 0.0012 18.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain DnaB_C PF03796.10 gi|435851280|ref|YP_007312866.1| - 0.002 17.0 0.0 0.013 14.4 0.0 1.9 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|435851280|ref|YP_007312866.1| - 0.015 15.4 0.1 0.15 12.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|435851280|ref|YP_007312866.1| - 0.015 16.0 0.3 0.07 13.9 0.2 1.9 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|435851280|ref|YP_007312866.1| - 0.022 14.4 0.2 0.044 13.5 0.1 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|435851280|ref|YP_007312866.1| - 0.044 13.6 0.0 0.12 12.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|435851280|ref|YP_007312866.1| - 0.081 12.8 0.2 0.44 10.4 0.0 2.1 2 1 1 3 3 3 0 AAA domain GvpD PF07088.6 gi|435851280|ref|YP_007312866.1| - 0.11 10.8 0.0 0.21 9.8 0.0 1.4 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA PF00004.24 gi|435851280|ref|YP_007312866.1| - 0.18 12.0 0.8 0.42 10.8 0.5 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PAS_9 PF13426.1 gi|435851282|ref|YP_007312868.1| - 7.8e-48 161.1 0.5 9.7e-13 48.3 0.0 4.4 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|435851282|ref|YP_007312868.1| - 4.5e-36 123.0 0.1 3e-11 43.0 0.0 4.6 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|435851282|ref|YP_007312868.1| - 9.5e-31 105.8 0.3 2.1e-30 104.6 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|435851282|ref|YP_007312868.1| - 5.5e-29 100.4 0.0 4.3e-08 33.1 0.0 4.3 4 0 0 4 4 4 4 PAS fold HisKA PF00512.20 gi|435851282|ref|YP_007312868.1| - 4.3e-19 68.2 0.1 1.3e-18 66.7 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|435851282|ref|YP_007312868.1| - 2.7e-15 55.5 0.0 2.2e-06 27.2 0.0 4.8 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.6 gi|435851282|ref|YP_007312868.1| - 4.6e-10 39.4 0.2 8.9e-06 25.7 0.0 4.4 5 0 0 5 5 4 2 PAS fold PAS_10 PF13596.1 gi|435851282|ref|YP_007312868.1| - 9.7e-06 25.8 0.0 0.34 11.1 0.0 4.0 4 0 0 4 4 4 2 PAS domain HATPase_c_5 PF14501.1 gi|435851282|ref|YP_007312868.1| - 5.2e-05 22.8 0.1 0.00015 21.3 0.1 1.9 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|435851282|ref|YP_007312868.1| - 0.0022 17.7 0.0 0.0061 16.3 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|435851282|ref|YP_007312868.1| - 0.0091 15.9 0.1 6.7 6.7 0.0 3.5 3 1 0 3 3 3 1 PAS fold DUF11 PF01345.13 gi|435851283|ref|YP_007312869.1| - 7.2e-05 22.7 0.0 0.00085 19.3 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|435851283|ref|YP_007312869.1| - 0.039 13.0 0.0 0.16 11.1 0.0 1.9 1 1 1 2 2 2 0 Translocon-associated protein beta (TRAPB) DHHA1 PF02272.14 gi|435851284|ref|YP_007312870.1| - 7.3e-08 32.0 0.0 1.7e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|435851284|ref|YP_007312870.1| - 2.5e-07 30.4 0.2 9.5e-07 28.5 0.0 2.0 1 1 1 2 2 2 1 DHH family SEC-C PF02810.10 gi|435851284|ref|YP_007312870.1| - 0.076 12.5 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 SEC-C motif DUF3240 PF11582.3 gi|435851284|ref|YP_007312870.1| - 0.13 12.2 0.0 0.38 10.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3240) MMR_HSR1 PF01926.18 gi|435851285|ref|YP_007312871.1| - 1.7e-18 66.6 0.0 2.3e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|435851285|ref|YP_007312871.1| - 1.3e-14 53.8 0.8 8.2e-14 51.1 0.5 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|435851285|ref|YP_007312871.1| - 4.9e-08 32.6 0.3 8.9e-07 28.5 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|435851285|ref|YP_007312871.1| - 5.8e-05 22.9 0.1 0.00011 22.0 0.1 1.4 1 1 0 1 1 1 1 Dynamin family ArgK PF03308.11 gi|435851285|ref|YP_007312871.1| - 0.00026 19.8 0.5 0.059 12.1 0.1 2.2 2 0 0 2 2 2 2 ArgK protein MobB PF03205.9 gi|435851285|ref|YP_007312871.1| - 0.00067 19.3 1.2 0.0016 18.1 0.2 2.0 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|435851285|ref|YP_007312871.1| - 0.0031 18.3 0.0 0.0054 17.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain SRPRB PF09439.5 gi|435851285|ref|YP_007312871.1| - 0.009 15.2 0.9 0.21 10.7 0.3 2.5 1 1 1 2 2 2 1 Signal recognition particle receptor beta subunit DUF258 PF03193.11 gi|435851285|ref|YP_007312871.1| - 0.01 15.0 0.6 0.03 13.5 0.4 1.7 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|435851285|ref|YP_007312871.1| - 0.014 15.6 0.0 0.026 14.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain Septin PF00735.13 gi|435851285|ref|YP_007312871.1| - 0.02 13.9 0.8 0.085 11.8 0.5 2.2 1 1 0 1 1 1 0 Septin Miro PF08477.8 gi|435851285|ref|YP_007312871.1| - 0.02 15.3 0.9 0.15 12.5 0.6 2.2 1 1 0 1 1 1 0 Miro-like protein AAA_22 PF13401.1 gi|435851285|ref|YP_007312871.1| - 0.021 14.9 0.3 0.17 12.0 0.2 2.2 1 1 1 2 2 2 0 AAA domain Arf PF00025.16 gi|435851285|ref|YP_007312871.1| - 0.032 13.4 0.6 1.2 8.3 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family AIG1 PF04548.11 gi|435851285|ref|YP_007312871.1| - 0.034 13.2 0.0 0.065 12.3 0.0 1.5 1 0 0 1 1 1 0 AIG1 family PduV-EutP PF10662.4 gi|435851285|ref|YP_007312871.1| - 0.094 12.2 0.1 0.92 8.9 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF2303 PF10065.4 gi|435851285|ref|YP_007312871.1| - 0.14 11.0 0.3 1.3 7.7 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2303) Diphtheria_C PF02763.9 gi|435851285|ref|YP_007312871.1| - 0.15 11.4 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Diphtheria toxin, C domain Phosphorylase PF00343.15 gi|435851286|ref|YP_007312872.1| - 1.8e-27 95.6 0.3 2.8e-18 65.2 0.0 3.6 2 1 1 4 4 4 3 Carbohydrate phosphorylase CTP_transf_1 PF01148.15 gi|435851287|ref|YP_007312873.1| - 3.4e-09 36.7 18.8 7.6e-08 32.3 6.1 2.9 1 1 1 2 2 2 2 Cytidylyltransferase family DUF4177 PF13783.1 gi|435851288|ref|YP_007312874.1| - 7e-10 38.4 0.1 9e-10 38.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) Aconitase PF00330.15 gi|435851289|ref|YP_007312875.1| - 8e-137 456.4 0.0 1.2e-95 320.7 0.0 2.2 2 0 0 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|435851289|ref|YP_007312875.1| - 5.6e-43 146.1 0.0 1.3e-42 144.9 0.0 1.7 2 0 0 2 2 2 1 Aconitase C-terminal domain zinc_ribbon_6 PF14599.1 gi|435851290|ref|YP_007312876.1| - 0.0033 17.1 0.5 0.075 12.8 0.0 2.0 2 0 0 2 2 2 1 Zinc-ribbon DZR PF12773.2 gi|435851290|ref|YP_007312876.1| - 0.055 13.2 1.0 0.068 12.9 0.7 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-trcl PF13451.1 gi|435851290|ref|YP_007312876.1| - 0.22 11.1 2.4 4 7.1 0.1 2.2 2 0 0 2 2 2 0 Probable zinc-binding domain DNA_RNApol_7kD PF03604.8 gi|435851290|ref|YP_007312876.1| - 0.29 10.6 2.5 0.91 9.0 1.7 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit ArfGap PF01412.13 gi|435851290|ref|YP_007312876.1| - 0.43 10.3 1.7 0.76 9.5 1.2 1.4 1 1 0 1 1 1 0 Putative GTPase activating protein for Arf Citrate_synt PF00285.16 gi|435851291|ref|YP_007312877.1| - 5.8e-126 419.9 0.0 6.5e-126 419.8 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase Chordopox_G2 PF05796.7 gi|435851291|ref|YP_007312877.1| - 0.063 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Chordopoxvirus protein G2 Polyketide_cyc2 PF10604.4 gi|435851292|ref|YP_007312878.1| - 1.1e-07 32.0 0.0 1.4e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|435851292|ref|YP_007312878.1| - 0.033 14.2 0.1 0.043 13.9 0.0 1.2 1 0 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.15 gi|435851292|ref|YP_007312878.1| - 0.053 13.5 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport UAA PF08449.6 gi|435851293|ref|YP_007312879.1| - 0.091 11.6 0.0 0.098 11.5 0.0 1.0 1 0 0 1 1 1 0 UAA transporter family DUF2582 PF10771.4 gi|435851294|ref|YP_007312880.1| - 4.6e-18 64.8 0.0 4.8e-18 64.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) DUF494 PF04361.8 gi|435851294|ref|YP_007312880.1| - 0.047 13.3 0.0 0.05 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF494) Fer4_5 PF12801.2 gi|435851296|ref|YP_007312882.1| - 8.1e-13 47.9 8.1 2.5e-10 39.9 1.4 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435851296|ref|YP_007312882.1| - 4.9e-11 42.2 44.5 4.5e-07 29.5 11.8 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435851296|ref|YP_007312882.1| - 5.9e-09 35.1 22.4 1e-05 24.9 2.1 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435851296|ref|YP_007312882.1| - 1.1e-08 35.3 14.1 0.00046 20.5 3.1 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435851296|ref|YP_007312882.1| - 2.7e-08 33.9 18.0 1.4e-06 28.4 11.0 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435851296|ref|YP_007312882.1| - 4.4e-07 29.6 15.1 0.00011 22.0 2.2 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435851296|ref|YP_007312882.1| - 5.8e-07 29.7 11.0 0.00028 21.1 1.1 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435851296|ref|YP_007312882.1| - 2.9e-06 27.1 28.0 3.2e-05 23.8 9.7 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435851296|ref|YP_007312882.1| - 1.6e-05 24.5 20.2 0.00041 20.1 2.3 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435851296|ref|YP_007312882.1| - 2e-05 24.8 21.7 0.00054 20.3 2.1 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851296|ref|YP_007312882.1| - 2.2e-05 24.0 18.5 0.0013 18.5 2.4 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435851296|ref|YP_007312882.1| - 0.001 19.7 18.7 0.006 17.3 1.9 2.8 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|435851296|ref|YP_007312882.1| - 0.0011 19.3 3.5 0.0011 19.3 2.5 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435851296|ref|YP_007312882.1| - 0.011 16.1 14.5 0.095 13.0 1.1 2.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|435851296|ref|YP_007312882.1| - 0.025 14.8 15.5 0.046 14.0 3.1 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|435851296|ref|YP_007312882.1| - 0.42 11.2 13.0 1.8 9.1 1.4 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain MarR_2 PF12802.2 gi|435851297|ref|YP_007312883.1| - 2e-08 33.7 0.0 3.1e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|435851297|ref|YP_007312883.1| - 1.6e-06 27.7 0.0 2.4e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|435851297|ref|YP_007312883.1| - 0.00037 20.7 0.1 0.0011 19.2 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain Mga PF05043.8 gi|435851297|ref|YP_007312883.1| - 0.0033 17.6 0.2 0.0063 16.7 0.0 1.6 2 0 0 2 2 2 1 Mga helix-turn-helix domain HTH_24 PF13412.1 gi|435851297|ref|YP_007312883.1| - 0.0046 16.3 0.1 0.01 15.1 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding FUR PF01475.14 gi|435851297|ref|YP_007312883.1| - 0.0087 15.9 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family TFIIE_alpha PF02002.12 gi|435851297|ref|YP_007312883.1| - 0.0089 15.5 1.7 0.011 15.1 1.2 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit Penicillinase_R PF03965.11 gi|435851297|ref|YP_007312883.1| - 0.0092 16.0 0.3 0.012 15.6 0.2 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.5 gi|435851297|ref|YP_007312883.1| - 0.0096 15.4 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain Trans_reg_C PF00486.23 gi|435851297|ref|YP_007312883.1| - 0.01 15.7 0.2 0.045 13.6 0.1 2.1 1 1 0 1 1 1 0 Transcriptional regulatory protein, C terminal HTH_11 PF08279.7 gi|435851297|ref|YP_007312883.1| - 0.012 15.2 0.2 0.028 14.0 0.1 1.6 1 0 0 1 1 1 0 HTH domain GerE PF00196.14 gi|435851297|ref|YP_007312883.1| - 0.027 13.7 0.1 0.085 12.1 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF3283 PF11686.3 gi|435851297|ref|YP_007312883.1| - 0.029 14.1 0.2 0.059 13.1 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3283) Fe_dep_repress PF01325.14 gi|435851297|ref|YP_007312883.1| - 0.082 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|435851297|ref|YP_007312883.1| - 0.19 11.4 0.6 0.36 10.5 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain BPD_transp_1 PF00528.17 gi|435851298|ref|YP_007312884.1| - 3.4e-22 78.8 18.4 3.6e-22 78.7 12.4 1.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MscL PF01741.13 gi|435851298|ref|YP_007312884.1| - 0.45 10.6 3.1 1.3 9.1 2.2 1.8 1 0 0 1 1 1 0 Large-conductance mechanosensitive channel, MscL Caps_synth_CapC PF14102.1 gi|435851298|ref|YP_007312884.1| - 7.2 6.7 15.2 0.38 10.8 5.9 2.0 2 1 0 2 2 2 0 Capsule biosynthesis CapC BPD_transp_1 PF00528.17 gi|435851299|ref|YP_007312885.1| - 4.6e-18 65.3 12.2 6.3e-18 64.9 8.5 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|435851300|ref|YP_007312886.1| - 1.6e-33 115.8 0.0 3.2e-33 114.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435851300|ref|YP_007312886.1| - 9e-12 45.5 0.0 2.4e-06 27.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|435851300|ref|YP_007312886.1| - 0.00024 21.1 0.0 0.00064 19.7 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain CBS PF00571.23 gi|435851300|ref|YP_007312886.1| - 0.00025 20.7 0.7 0.31 10.8 0.1 2.8 2 0 0 2 2 2 2 CBS domain AAA_22 PF13401.1 gi|435851300|ref|YP_007312886.1| - 0.00049 20.2 0.0 0.0018 18.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|435851300|ref|YP_007312886.1| - 0.00065 18.9 0.0 0.0023 17.1 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|435851300|ref|YP_007312886.1| - 0.0015 18.2 0.0 0.0028 17.3 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|435851300|ref|YP_007312886.1| - 0.0018 17.8 0.0 0.0038 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|435851300|ref|YP_007312886.1| - 0.0019 17.4 0.0 0.091 11.9 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.16 gi|435851300|ref|YP_007312886.1| - 0.002 17.3 0.0 0.0039 16.3 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI G-alpha PF00503.15 gi|435851300|ref|YP_007312886.1| - 0.0024 16.6 0.0 0.0037 16.0 0.0 1.4 1 1 0 1 1 1 1 G-protein alpha subunit Zeta_toxin PF06414.7 gi|435851300|ref|YP_007312886.1| - 0.0026 16.8 0.0 0.005 15.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|435851300|ref|YP_007312886.1| - 0.0052 16.2 0.0 0.0097 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SE PF00437.15 gi|435851300|ref|YP_007312886.1| - 0.0058 15.5 0.0 0.011 14.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|435851300|ref|YP_007312886.1| - 0.0067 17.2 0.2 0.032 15.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|435851300|ref|YP_007312886.1| - 0.0096 16.1 0.0 0.029 14.5 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|435851300|ref|YP_007312886.1| - 0.011 14.7 0.1 2.3 7.1 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|435851300|ref|YP_007312886.1| - 0.013 15.3 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|435851300|ref|YP_007312886.1| - 0.013 15.7 0.1 0.11 12.8 0.0 2.4 2 1 1 3 3 3 0 AAA domain AAA_5 PF07728.9 gi|435851300|ref|YP_007312886.1| - 0.019 14.7 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|435851300|ref|YP_007312886.1| - 0.029 13.7 0.1 0.14 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|435851300|ref|YP_007312886.1| - 0.031 14.6 0.0 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|435851300|ref|YP_007312886.1| - 0.031 13.7 0.0 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase MobB PF03205.9 gi|435851300|ref|YP_007312886.1| - 0.045 13.4 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|435851300|ref|YP_007312886.1| - 0.057 13.0 0.0 0.14 11.8 0.0 1.6 2 0 0 2 2 1 0 NACHT domain AAA_25 PF13481.1 gi|435851300|ref|YP_007312886.1| - 0.1 11.9 0.2 0.83 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|435851300|ref|YP_007312886.1| - 0.11 12.1 0.1 0.26 10.9 0.0 1.6 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 Rad17 PF03215.10 gi|435851300|ref|YP_007312886.1| - 0.12 10.9 0.0 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_24 PF13479.1 gi|435851300|ref|YP_007312886.1| - 0.12 11.8 0.0 0.35 10.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain OpuAC PF04069.7 gi|435851301|ref|YP_007312887.1| - 2.6e-57 194.1 5.1 3e-57 193.8 3.5 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system NMT1 PF09084.6 gi|435851301|ref|YP_007312887.1| - 0.012 15.1 0.9 0.022 14.3 0.2 1.7 2 0 0 2 2 2 0 NMT1/THI5 like Sod_Fe_C PF02777.13 gi|435851302|ref|YP_007312888.1| - 3.1e-39 133.0 0.4 8.8e-39 131.6 0.2 1.7 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|435851302|ref|YP_007312888.1| - 6.5e-27 93.6 2.0 1.1e-26 92.8 1.4 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain EFhand_Ca_insen PF08726.5 gi|435851302|ref|YP_007312888.1| - 0.11 12.4 0.2 0.23 11.4 0.1 1.5 1 0 0 1 1 1 0 Ca2+ insensitive EF hand DUF1972 PF09314.6 gi|435851303|ref|YP_007312889.1| - 0.13 11.6 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1972) VWA_2 PF13519.1 gi|435851304|ref|YP_007312890.1| - 1e-20 74.5 4.6 1.9e-16 60.6 0.0 3.7 2 1 1 3 3 3 2 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|435851304|ref|YP_007312890.1| - 3.5e-07 29.5 0.0 3.6e-05 22.9 0.0 2.9 2 1 1 3 3 3 1 VWA domain containing CoxE-like protein DUF1355 PF07090.6 gi|435851304|ref|YP_007312890.1| - 5.7e-07 29.0 0.0 1.6e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) VWA PF00092.23 gi|435851304|ref|YP_007312890.1| - 0.00015 21.5 1.5 0.055 13.1 0.1 2.6 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_3 PF13768.1 gi|435851304|ref|YP_007312890.1| - 0.0052 16.4 0.0 0.038 13.6 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain O-antigen_lig PF13425.1 gi|435851304|ref|YP_007312890.1| - 0.039 13.9 0.3 0.26 11.2 0.1 2.2 2 0 0 2 2 2 0 O-antigen ligase like membrane protein BatA PF07584.6 gi|435851305|ref|YP_007312891.1| - 3.7e-13 49.4 15.4 7.4e-13 48.4 8.3 2.3 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|435851305|ref|YP_007312891.1| - 2e-07 31.2 2.2 1.2e-06 28.7 1.4 2.3 1 1 0 1 1 1 1 von Willebrand factor type A domain ABC_transp_aux PF09822.4 gi|435851305|ref|YP_007312891.1| - 0.00099 18.6 0.0 0.0023 17.4 0.0 1.6 2 0 0 2 2 2 1 ABC-type uncharacterized transport system DUF2194 PF09960.4 gi|435851305|ref|YP_007312891.1| - 0.0014 16.7 0.0 0.0028 15.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2194) VWA_CoxE PF05762.9 gi|435851305|ref|YP_007312891.1| - 0.097 11.7 0.1 0.18 10.9 0.1 1.3 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein ThuA PF06283.6 gi|435851305|ref|YP_007312891.1| - 0.17 11.5 0.0 0.38 10.4 0.0 1.5 1 1 0 1 1 1 0 Trehalose utilisation DUF58 PF01882.13 gi|435851306|ref|YP_007312892.1| - 6e-22 77.5 0.0 1e-21 76.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_CoxE PF05762.9 gi|435851306|ref|YP_007312892.1| - 0.00019 20.6 0.1 0.00052 19.2 0.1 1.7 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|435851306|ref|YP_007312892.1| - 0.00022 21.3 0.0 0.0003 20.9 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_3 PF07726.6 gi|435851307|ref|YP_007312893.1| - 1.4e-62 209.1 0.1 2.5e-62 208.2 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|435851307|ref|YP_007312893.1| - 4.6e-10 39.3 0.0 1.1e-09 38.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|435851307|ref|YP_007312893.1| - 2e-06 26.8 0.5 5.3e-06 25.4 0.3 1.8 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|435851307|ref|YP_007312893.1| - 1.6e-05 25.1 0.0 3e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|435851307|ref|YP_007312893.1| - 0.0087 15.1 0.2 0.045 12.7 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|435851307|ref|YP_007312893.1| - 0.02 14.3 0.4 0.12 11.8 0.1 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain SecA_DEAD PF07517.9 gi|435851307|ref|YP_007312893.1| - 0.045 13.0 0.3 0.088 12.0 0.1 1.5 2 0 0 2 2 2 0 SecA DEAD-like domain Mg_chelatase PF01078.16 gi|435851307|ref|YP_007312893.1| - 0.071 12.2 0.1 0.65 9.1 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF4231 PF14015.1 gi|435851308|ref|YP_007312894.1| - 0.032 14.2 0.2 0.032 14.2 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) PDT PF00800.13 gi|435851309|ref|YP_007312895.1| - 7.9e-58 194.9 0.0 1e-57 194.6 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|435851309|ref|YP_007312895.1| - 1.6e-07 30.6 0.0 3.6e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 ACT domain dCMP_cyt_deam_1 PF00383.17 gi|435851312|ref|YP_007312898.1| - 3.4e-23 81.2 0.0 5.1e-23 80.6 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|435851312|ref|YP_007312898.1| - 0.0063 16.3 0.8 0.11 12.3 0.6 2.2 1 1 0 1 1 1 1 Bd3614-like deaminase MafB19-deam PF14437.1 gi|435851312|ref|YP_007312898.1| - 0.0073 15.9 0.0 0.0098 15.5 0.0 1.3 1 0 0 1 1 1 1 MafB19-like deaminase APOBEC_N PF08210.6 gi|435851312|ref|YP_007312898.1| - 0.048 13.2 0.2 0.056 13.0 0.2 1.3 1 1 0 1 1 1 0 APOBEC-like N-terminal domain OTT_1508_deam PF14441.1 gi|435851312|ref|YP_007312898.1| - 0.053 13.3 0.0 0.067 12.9 0.0 1.2 1 0 0 1 1 1 0 OTT_1508-like deaminase DUF2162 PF09930.4 gi|435851312|ref|YP_007312898.1| - 0.13 11.3 0.1 0.17 10.9 0.1 1.2 1 0 0 1 1 1 0 Predicted transporter (DUF2162) DUF1823 PF08853.6 gi|435851313|ref|YP_007312899.1| - 0.052 13.2 0.0 0.053 13.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1823) SEFIR PF08357.6 gi|435851314|ref|YP_007312900.1| - 0.047 13.7 0.0 0.061 13.3 0.0 1.2 1 0 0 1 1 1 0 SEFIR domain zinc_ribbon_2 PF13240.1 gi|435851314|ref|YP_007312900.1| - 0.064 12.7 1.2 5.2 6.6 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Cas_Cas1 PF01867.11 gi|435851317|ref|YP_007312903.1| - 2.5e-80 269.5 0.1 2.9e-80 269.3 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|435851318|ref|YP_007312904.1| - 2.3e-21 75.7 0.5 2.7e-21 75.4 0.3 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Lys PF00062.15 gi|435851318|ref|YP_007312904.1| - 0.0077 16.2 0.1 0.01 15.8 0.1 1.1 1 0 0 1 1 1 1 C-type lysozyme/alpha-lactalbumin family Cas_Cas4 PF01930.12 gi|435851319|ref|YP_007312905.1| - 8.8e-23 80.9 6.7 1.1e-22 80.6 4.7 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|435851319|ref|YP_007312905.1| - 1.9e-12 47.1 2.0 1.9e-12 47.1 1.4 1.8 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily RVT_1 PF00078.22 gi|435851321|ref|YP_007312907.1| - 1.1e-39 136.0 0.0 1.7e-39 135.4 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase (RNA-dependent DNA polymerase) GIIM PF08388.6 gi|435851321|ref|YP_007312907.1| - 5.6e-05 22.8 2.1 0.00016 21.3 0.0 2.5 3 0 0 3 3 3 1 Group II intron, maturase-specific domain RAMPs PF03787.10 gi|435851323|ref|YP_007312909.1| - 6.9e-09 35.8 0.0 9.3e-09 35.4 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|435851324|ref|YP_007312910.1| - 2.5e-07 30.7 0.0 1.7e-06 28.0 0.0 2.1 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|435851326|ref|YP_007312912.1| - 2.8e-20 73.0 0.0 4.2e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 RAMP superfamily TIR-like PF10137.4 gi|435851329|ref|YP_007312915.1| - 4.7e-33 113.4 0.0 6.9e-33 112.9 0.0 1.2 1 0 0 1 1 1 1 Predicted nucleotide-binding protein containing TIR-like domain Transposase_mut PF00872.13 gi|435851330|ref|YP_007312916.1| - 6.4e-102 340.9 0.9 8e-102 340.6 0.6 1.0 1 0 0 1 1 1 1 Transposase, Mutator family MULE PF10551.4 gi|435851330|ref|YP_007312916.1| - 1.1e-11 44.6 0.0 6e-11 42.3 0.0 2.3 3 0 0 3 3 3 1 MULE transposase domain DDE_Tnp_IS66 PF03050.9 gi|435851330|ref|YP_007312916.1| - 3.8e-06 26.3 0.0 5.9e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_ISL3 PF01610.12 gi|435851330|ref|YP_007312916.1| - 0.013 15.1 0.8 0.036 13.6 0.0 2.1 2 1 1 3 3 3 0 Transposase Ribosomal_S13 PF00416.17 gi|435851330|ref|YP_007312916.1| - 0.02 15.3 0.3 0.11 12.9 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S13/S18 Kinocilin PF15033.1 gi|435851330|ref|YP_007312916.1| - 0.021 14.3 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 Kinocilin protein Anti-adapt_IraP PF10796.4 gi|435851330|ref|YP_007312916.1| - 0.078 13.3 0.1 0.21 11.9 0.1 1.7 1 0 0 1 1 1 0 Sigma-S stabilisation anti-adaptor protein Peptidase_C97 PF05903.9 gi|435851330|ref|YP_007312916.1| - 0.11 12.2 0.2 0.41 10.4 0.0 1.9 2 0 0 2 2 2 0 PPPDE putative peptidase domain TAF PF02969.12 gi|435851330|ref|YP_007312916.1| - 0.13 12.1 1.0 2.6 8.0 0.1 2.4 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) Glycos_trans_3N PF02885.12 gi|435851332|ref|YP_007312918.1| - 2.1e-17 62.4 0.3 4.8e-17 61.3 0.2 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.8 gi|435851332|ref|YP_007312918.1| - 1.5e-15 56.4 0.0 4e-15 55.0 0.0 1.8 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|435851332|ref|YP_007312918.1| - 6.9e-12 45.2 2.4 4.9e-11 42.5 0.5 2.7 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain CDC48_N PF02359.13 gi|435851332|ref|YP_007312918.1| - 1.6e-06 27.9 0.3 8.2e-06 25.6 0.0 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Molydop_binding PF01568.16 gi|435851332|ref|YP_007312918.1| - 1.4e-05 24.8 0.1 2.9e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF2254 PF10011.4 gi|435851332|ref|YP_007312918.1| - 0.011 14.1 0.0 0.019 13.4 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) HlyD_3 PF13437.1 gi|435851332|ref|YP_007312918.1| - 0.056 13.7 0.2 0.97 9.8 0.0 2.9 3 0 0 3 3 3 0 HlyD family secretion protein Peptidase_C26 PF07722.8 gi|435851332|ref|YP_007312918.1| - 0.062 12.7 0.1 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase C26 HTH_37 PF13744.1 gi|435851332|ref|YP_007312918.1| - 0.15 11.8 0.9 0.65 9.8 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Trm56 PF01994.11 gi|435851333|ref|YP_007312919.1| - 1.9e-48 163.2 0.0 2.3e-48 162.9 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 DUF3852 PF12963.2 gi|435851334|ref|YP_007312920.1| - 0.012 15.5 1.1 0.013 15.4 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3852) DUF2877 PF11392.3 gi|435851334|ref|YP_007312920.1| - 0.057 13.6 0.2 0.067 13.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2877) Phage_T4_gp36 PF03903.8 gi|435851334|ref|YP_007312920.1| - 0.087 12.9 1.6 0.093 12.8 1.1 1.0 1 0 0 1 1 1 0 Phage T4 tail fibre EamA PF00892.15 gi|435851335|ref|YP_007312921.1| - 9.5e-19 67.6 44.8 1.5e-09 38.0 12.4 2.4 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|435851335|ref|YP_007312921.1| - 2.2e-05 24.6 6.3 2.2e-05 24.6 4.4 4.1 1 1 3 4 4 4 1 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|435851335|ref|YP_007312921.1| - 0.0011 18.7 11.9 0.11 12.3 1.8 3.1 2 1 1 3 3 3 2 Uncharacterised protein family UPF0546 ABC_tran PF00005.22 gi|435851336|ref|YP_007312922.1| - 1.9e-37 128.5 0.0 2.6e-37 128.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435851336|ref|YP_007312922.1| - 7.7e-17 62.1 0.0 1.1e-09 38.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|435851336|ref|YP_007312922.1| - 1.5e-09 37.4 0.2 1.2e-07 31.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|435851336|ref|YP_007312922.1| - 1.2e-06 28.2 0.1 0.0075 15.7 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|435851336|ref|YP_007312922.1| - 8.5e-06 25.9 0.0 3.1e-05 24.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|435851336|ref|YP_007312922.1| - 2.9e-05 24.1 0.1 4.8e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|435851336|ref|YP_007312922.1| - 0.00014 21.3 0.0 0.00031 20.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|435851336|ref|YP_007312922.1| - 0.00023 20.3 0.0 0.23 10.4 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|435851336|ref|YP_007312922.1| - 0.00042 20.6 0.1 0.00083 19.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|435851336|ref|YP_007312922.1| - 0.00043 18.9 0.1 0.15 10.5 0.1 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|435851336|ref|YP_007312922.1| - 0.00069 20.4 1.5 0.0032 18.2 1.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|435851336|ref|YP_007312922.1| - 0.00098 17.7 0.0 0.05 12.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|435851336|ref|YP_007312922.1| - 0.0021 17.5 0.3 0.14 11.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|435851336|ref|YP_007312922.1| - 0.0032 17.3 0.1 0.0048 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|435851336|ref|YP_007312922.1| - 0.0047 16.1 0.0 0.0068 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|435851336|ref|YP_007312922.1| - 0.0062 16.4 0.1 0.059 13.3 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|435851336|ref|YP_007312922.1| - 0.0079 15.8 0.0 0.029 14.0 0.0 1.8 2 0 0 2 2 2 1 NACHT domain Arch_ATPase PF01637.13 gi|435851336|ref|YP_007312922.1| - 0.021 14.5 0.1 0.081 12.6 0.0 1.9 1 1 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|435851336|ref|YP_007312922.1| - 0.031 13.9 0.0 0.075 12.7 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|435851336|ref|YP_007312922.1| - 0.032 13.8 0.0 0.066 12.8 0.0 1.6 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 G-alpha PF00503.15 gi|435851336|ref|YP_007312922.1| - 0.032 12.9 0.0 0.034 12.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit T2SE PF00437.15 gi|435851336|ref|YP_007312922.1| - 0.033 13.1 0.0 0.069 12.0 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|435851336|ref|YP_007312922.1| - 0.034 13.6 0.0 0.082 12.3 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|435851336|ref|YP_007312922.1| - 0.049 13.9 0.0 0.092 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|435851336|ref|YP_007312922.1| - 0.068 12.5 0.0 0.17 11.2 0.0 1.6 2 0 0 2 2 2 0 MutS domain V AAA_19 PF13245.1 gi|435851336|ref|YP_007312922.1| - 0.074 12.8 0.0 0.28 10.9 0.0 1.9 2 0 0 2 2 1 0 Part of AAA domain AAA_30 PF13604.1 gi|435851336|ref|YP_007312922.1| - 0.076 12.5 0.0 0.22 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|435851336|ref|YP_007312922.1| - 0.099 12.1 0.2 0.51 9.8 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein BPD_transp_1 PF00528.17 gi|435851337|ref|YP_007312923.1| - 1e-25 90.3 6.9 1.3e-25 90.0 4.8 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component LVIVD PF08309.6 gi|435851338|ref|YP_007312924.1| - 2.8e-186 602.3 128.3 1.3e-19 68.9 1.4 14.6 14 1 0 14 14 14 14 LVIVD repeat Beta_propel PF09826.4 gi|435851338|ref|YP_007312924.1| - 1.9e-13 49.6 3.6 4.8e-07 28.4 0.3 5.4 1 1 3 5 5 5 3 Beta propeller domain FG-GAP PF01839.18 gi|435851338|ref|YP_007312924.1| - 9.6e-06 25.1 26.2 0.3 10.8 2.4 7.1 5 0 0 5 5 5 4 FG-GAP repeat VCBS PF13517.1 gi|435851338|ref|YP_007312924.1| - 1.3e-05 25.4 59.7 0.00033 20.9 7.8 8.3 3 3 7 10 10 10 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella CPSF_A PF03178.10 gi|435851338|ref|YP_007312924.1| - 0.00044 19.4 0.2 6.5 5.7 0.0 4.4 2 2 3 5 5 5 2 CPSF A subunit region PQQ_3 PF13570.1 gi|435851338|ref|YP_007312924.1| - 0.001 19.2 109.0 0.065 13.5 0.8 14.2 14 0 0 14 14 14 7 PQQ-like domain Fae PF08714.6 gi|435851339|ref|YP_007312925.1| - 4.2e-70 234.5 1.4 4.7e-70 234.4 1.0 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) zf-CDGSH PF09360.5 gi|435851341|ref|YP_007312927.1| - 3.6e-15 55.4 0.0 5.1e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type TrmB PF01978.14 gi|435851342|ref|YP_007312928.1| - 0.0038 16.9 0.0 0.0076 15.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|435851342|ref|YP_007312928.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2551 PF10826.3 gi|435851343|ref|YP_007312929.1| - 2e-30 104.4 0.5 2.5e-30 104.2 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.11 gi|435851343|ref|YP_007312929.1| - 0.0071 16.4 0.0 0.0099 15.9 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor Ded_cyto PF06920.8 gi|435851343|ref|YP_007312929.1| - 0.1 11.8 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Dedicator of cytokinesis Lar_restr_allev PF14354.1 gi|435851344|ref|YP_007312930.1| - 0.057 13.7 0.4 0.093 13.0 0.3 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar MFS_1 PF07690.11 gi|435851345|ref|YP_007312931.1| - 8.4e-36 123.3 37.0 1.5e-29 102.7 19.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|435851345|ref|YP_007312931.1| - 6.3e-11 41.5 3.2 6.3e-11 41.5 2.2 2.3 1 1 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|435851345|ref|YP_007312931.1| - 2e-05 22.9 1.8 2e-05 22.9 1.3 2.1 1 1 0 2 2 2 1 Transmembrane secretion effector 4HB_MCP_1 PF12729.2 gi|435851345|ref|YP_007312931.1| - 0.19 11.0 0.1 0.44 9.8 0.1 1.6 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Metalloenzyme PF01676.13 gi|435851346|ref|YP_007312932.1| - 5.4e-15 55.4 0.4 1.1e-14 54.4 0.2 1.6 1 1 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|435851346|ref|YP_007312932.1| - 5.8e-09 35.7 0.3 2.1e-08 33.9 0.2 1.8 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|435851346|ref|YP_007312932.1| - 6.1e-09 35.4 0.1 1.1e-08 34.6 0.1 1.3 1 0 0 1 1 1 1 Sulfatase Colicin_Ia PF11504.3 gi|435851346|ref|YP_007312932.1| - 0.072 13.0 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Colicin Ia TusA PF01206.12 gi|435851347|ref|YP_007312933.1| - 6.5e-21 73.7 0.1 7e-21 73.6 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.1 gi|435851348|ref|YP_007312934.1| - 7.8e-34 116.5 0.7 4.1e-33 114.2 0.5 1.8 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|435851348|ref|YP_007312934.1| - 3.2e-05 23.9 0.0 4.9e-05 23.3 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family Aminotran_5 PF00266.14 gi|435851349|ref|YP_007312935.1| - 6.6e-76 255.4 0.1 8e-76 255.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|435851349|ref|YP_007312935.1| - 7.4e-06 25.3 0.1 1.1e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|435851349|ref|YP_007312935.1| - 2.9e-05 23.2 0.1 4.8e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|435851349|ref|YP_007312935.1| - 0.0007 18.6 0.0 0.001 18.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|435851349|ref|YP_007312935.1| - 0.0092 14.2 0.2 0.016 13.5 0.2 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|435851349|ref|YP_007312935.1| - 0.13 10.7 0.1 0.27 9.6 0.0 1.5 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain NifU_N PF01592.11 gi|435851350|ref|YP_007312936.1| - 1e-44 151.5 0.0 1.8e-44 150.6 0.0 1.4 1 0 0 1 1 1 1 NifU-like N terminal domain DUF59 PF01883.14 gi|435851350|ref|YP_007312936.1| - 2.8e-11 43.2 1.3 7.4e-11 41.8 0.9 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF59 ECH PF00378.15 gi|435851350|ref|YP_007312936.1| - 0.041 13.0 0.1 0.07 12.2 0.0 1.4 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase family DUF2284 PF10050.4 gi|435851351|ref|YP_007312937.1| - 1.1e-42 145.4 0.1 1.3e-42 145.2 0.1 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) Fer4_8 PF13183.1 gi|435851351|ref|YP_007312937.1| - 0.029 14.3 1.1 0.056 13.4 0.8 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435851351|ref|YP_007312937.1| - 0.58 10.4 5.8 1.3 9.3 3.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain TPR_11 PF13414.1 gi|435851352|ref|YP_007312938.1| - 7.3e-11 41.5 0.4 0.00023 20.7 0.0 2.3 2 0 0 2 2 2 2 TPR repeat TPR_2 PF07719.12 gi|435851352|ref|YP_007312938.1| - 9e-10 37.7 2.4 4.8e-05 22.9 0.2 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|435851352|ref|YP_007312938.1| - 5.2e-09 35.3 4.8 0.00016 21.0 0.7 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435851352|ref|YP_007312938.1| - 1.8e-08 34.7 0.0 1.6e-05 25.4 0.0 2.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435851352|ref|YP_007312938.1| - 2.7e-08 33.0 5.0 2.9e-07 29.7 0.6 3.4 2 1 1 3 3 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|435851352|ref|YP_007312938.1| - 5.3e-07 29.4 3.2 1.8e-05 24.4 0.8 2.8 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_17 PF13431.1 gi|435851352|ref|YP_007312938.1| - 1e-06 28.4 2.3 0.0005 20.0 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|435851352|ref|YP_007312938.1| - 3.2e-06 26.9 0.1 0.017 15.0 0.1 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|435851352|ref|YP_007312938.1| - 0.00099 19.1 0.3 0.0041 17.2 0.2 2.1 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|435851352|ref|YP_007312938.1| - 0.0019 18.6 0.0 0.31 11.7 0.0 2.8 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|435851352|ref|YP_007312938.1| - 0.0032 17.2 0.0 1.5 8.7 0.0 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat Disintegrin PF00200.18 gi|435851352|ref|YP_007312938.1| - 0.018 15.2 4.5 0.03 14.5 3.1 1.3 1 0 0 1 1 1 0 Disintegrin TPR_19 PF14559.1 gi|435851352|ref|YP_007312938.1| - 0.019 15.2 0.3 0.22 11.8 0.1 2.2 1 1 1 2 2 2 0 Tetratricopeptide repeat SPATA6 PF14909.1 gi|435851352|ref|YP_007312938.1| - 0.075 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Spermatogenesis-assoc protein 6 LAGLIDADG_1 PF00961.14 gi|435851352|ref|YP_007312938.1| - 6.8 7.3 8.8 0.92 10.0 1.4 2.5 1 1 1 2 2 2 0 LAGLIDADG endonuclease TRAM PF01938.15 gi|435851353|ref|YP_007312939.1| - 2.1e-17 62.6 1.0 2.3e-17 62.5 0.7 1.0 1 0 0 1 1 1 1 TRAM domain S1 PF00575.18 gi|435851353|ref|YP_007312939.1| - 0.055 13.5 2.1 4.7 7.3 0.1 2.3 2 1 0 2 2 2 0 S1 RNA binding domain EXOSC1 PF10447.4 gi|435851353|ref|YP_007312939.1| - 0.13 12.2 0.1 0.82 9.6 0.0 1.9 2 0 0 2 2 2 0 Exosome component EXOSC1/CSL4 DEAD PF00270.24 gi|435851354|ref|YP_007312940.1| - 2.4e-51 173.5 0.5 5.2e-51 172.4 0.3 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|435851354|ref|YP_007312940.1| - 3.6e-27 94.0 1.2 2.5e-26 91.3 0.2 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|435851354|ref|YP_007312940.1| - 4.4e-06 26.6 0.0 1e-05 25.4 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit CMS1 PF14617.1 gi|435851354|ref|YP_007312940.1| - 1.7e-05 24.0 0.2 6e-05 22.2 0.1 1.8 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit AAA_30 PF13604.1 gi|435851354|ref|YP_007312940.1| - 5.7e-05 22.7 0.0 0.00012 21.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain Helicase_RecD PF05127.9 gi|435851354|ref|YP_007312940.1| - 0.00037 20.1 0.0 0.00063 19.4 0.0 1.4 1 1 0 1 1 1 1 Helicase DUF1253 PF06862.7 gi|435851354|ref|YP_007312940.1| - 0.0065 14.9 0.0 0.16 10.3 0.0 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF1253) Helicase_C_2 PF13307.1 gi|435851354|ref|YP_007312940.1| - 0.009 15.9 0.0 0.22 11.4 0.0 2.3 2 1 0 2 2 2 1 Helicase C-terminal domain Nsp3_PL2pro PF12124.3 gi|435851354|ref|YP_007312940.1| - 0.027 14.0 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 Coronavirus polyprotein cleavage domain AAA_19 PF13245.1 gi|435851354|ref|YP_007312940.1| - 0.032 13.9 0.2 0.14 11.9 0.0 2.2 2 1 0 2 2 2 0 Part of AAA domain Flavi_DEAD PF07652.9 gi|435851354|ref|YP_007312940.1| - 0.094 12.4 0.2 0.27 10.9 0.2 1.9 1 1 0 1 1 1 0 Flavivirus DEAD domain Radical_SAM PF04055.16 gi|435851356|ref|YP_007312942.1| - 2e-19 70.3 0.1 2e-19 70.3 0.1 1.9 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|435851356|ref|YP_007312942.1| - 9.2e-06 25.8 0.0 9.2e-06 25.8 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain DZR PF12773.2 gi|435851356|ref|YP_007312942.1| - 0.057 13.2 0.1 0.057 13.2 0.1 3.0 3 0 0 3 3 3 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|435851356|ref|YP_007312942.1| - 0.13 11.7 0.1 0.13 11.7 0.1 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|435851356|ref|YP_007312942.1| - 0.4 10.7 12.7 12 6.0 0.0 4.1 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|435851356|ref|YP_007312942.1| - 4.2 6.7 9.5 5.5 6.3 0.1 3.4 2 1 1 3 3 3 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|435851356|ref|YP_007312942.1| - 5 6.7 7.8 1 8.9 0.1 2.9 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_4 PF13717.1 gi|435851356|ref|YP_007312942.1| - 9 6.0 15.8 4.3 7.1 0.7 4.2 4 0 0 4 4 4 0 zinc-ribbon domain Dabb PF07876.7 gi|435851357|ref|YP_007312943.1| - 5.5e-26 90.8 0.7 6.1e-26 90.6 0.5 1.0 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain ABM PF03992.11 gi|435851357|ref|YP_007312943.1| - 0.13 12.3 0.0 0.16 12.0 0.0 1.4 1 1 0 1 1 1 0 Antibiotic biosynthesis monooxygenase Polysacc_synt PF01943.12 gi|435851358|ref|YP_007312944.1| - 1.5e-15 57.2 17.8 1.5e-15 57.2 12.3 2.7 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|435851358|ref|YP_007312944.1| - 3.4e-08 33.2 16.7 3.4e-08 33.2 11.6 3.6 2 2 1 3 3 3 1 Polysaccharide biosynthesis protein Glyoxalase_2 PF12681.2 gi|435851359|ref|YP_007312945.1| - 2.7e-11 44.0 0.0 3.2e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|435851359|ref|YP_007312945.1| - 0.025 14.5 0.0 0.075 13.0 0.0 1.6 1 1 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Lon_C PF05362.8 gi|435851360|ref|YP_007312946.1| - 6.9e-15 54.9 0.3 1.3e-14 53.9 0.2 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|435851360|ref|YP_007312946.1| - 0.039 13.4 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 Subunit ChlI of Mg-chelatase TSC22 PF01166.13 gi|435851360|ref|YP_007312946.1| - 0.079 12.9 0.4 0.2 11.6 0.3 1.7 1 0 0 1 1 1 0 TSC-22/dip/bun family DUF4352 PF11611.3 gi|435851362|ref|YP_007312948.1| - 1.2e-20 73.9 0.0 1.6e-20 73.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) DUF3157 PF11355.3 gi|435851362|ref|YP_007312948.1| - 0.052 12.8 0.4 0.072 12.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3157) Fst_toxin PF13955.1 gi|435851362|ref|YP_007312948.1| - 0.26 11.0 3.1 0.51 10.0 2.1 1.4 1 0 0 1 1 1 0 Toxin Fst, type I toxin-antitoxin system RHH_1 PF01402.16 gi|435851363|ref|YP_007312949.1| - 0.0016 18.2 0.0 0.0032 17.2 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|435851363|ref|YP_007312949.1| - 0.0051 16.5 1.3 0.011 15.4 0.9 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain DUF3166 PF11365.3 gi|435851367|ref|YP_007312953.1| - 0.0057 17.0 0.2 0.0057 17.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3166) bZIP_1 PF00170.16 gi|435851367|ref|YP_007312953.1| - 0.072 13.0 0.4 0.092 12.7 0.3 1.1 1 0 0 1 1 1 0 bZIP transcription factor TF_Zn_Ribbon PF08271.7 gi|435851368|ref|YP_007312954.1| - 4.2e-06 25.9 0.3 7.8e-06 25.1 0.2 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|435851368|ref|YP_007312954.1| - 0.00017 21.4 1.1 0.57 10.1 0.1 2.4 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|435851368|ref|YP_007312954.1| - 0.0058 16.4 2.9 0.012 15.3 2.0 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-HIT PF04438.11 gi|435851368|ref|YP_007312954.1| - 0.077 12.6 1.2 0.73 9.5 0.0 2.2 2 0 0 2 2 2 0 HIT zinc finger OrfB_Zn_ribbon PF07282.6 gi|435851368|ref|YP_007312954.1| - 0.095 12.3 1.2 1.4 8.5 0.4 2.3 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|435851368|ref|YP_007312954.1| - 0.18 11.4 1.4 13 5.5 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2 PF00096.21 gi|435851368|ref|YP_007312954.1| - 0.26 11.7 1.6 3.5 8.1 0.2 2.7 2 0 0 2 2 2 0 Zinc finger, C2H2 type A2L_zn_ribbon PF08792.5 gi|435851368|ref|YP_007312954.1| - 0.29 10.6 2.1 13 5.3 0.0 2.7 3 0 0 3 3 3 0 A2L zinc ribbon domain Cobl PF09469.5 gi|435851372|ref|YP_007312958.1| - 0.14 12.1 0.8 2 8.4 0.1 2.3 2 0 0 2 2 2 0 Cordon-bleu ubiquitin-like domain RecT PF03837.9 gi|435851373|ref|YP_007312959.1| - 1.4e-37 128.8 0.0 2.2e-37 128.2 0.0 1.2 1 0 0 1 1 1 1 RecT family ADPrib_exo_Tox PF03496.9 gi|435851375|ref|YP_007312961.1| - 0.069 12.3 0.0 0.075 12.2 0.0 1.1 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme Lar_restr_allev PF14354.1 gi|435851376|ref|YP_007312962.1| - 0.0037 17.5 0.2 0.0065 16.7 0.2 1.6 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|435851376|ref|YP_007312962.1| - 0.011 14.9 1.7 0.024 13.8 1.2 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|435851376|ref|YP_007312962.1| - 0.012 15.1 0.2 0.024 14.1 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|435851376|ref|YP_007312962.1| - 0.017 14.4 1.7 0.032 13.5 1.2 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.1 gi|435851376|ref|YP_007312962.1| - 0.048 13.9 0.7 0.36 11.1 0.1 2.3 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Pectate_lyase_2 PF06917.7 gi|435851376|ref|YP_007312962.1| - 0.15 10.2 0.0 0.19 9.9 0.0 1.1 1 0 0 1 1 1 0 Periplasmic pectate lyase Gin PF10764.4 gi|435851376|ref|YP_007312962.1| - 0.17 11.6 3.4 0.89 9.3 2.1 2.2 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin DZR PF12773.2 gi|435851376|ref|YP_007312962.1| - 0.21 11.4 1.3 1.2 9.0 1.1 1.8 1 1 0 1 1 1 0 Double zinc ribbon DUF2296 PF10058.4 gi|435851376|ref|YP_007312962.1| - 0.42 10.3 6.3 70 3.2 3.2 3.4 2 1 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_2 PF13240.1 gi|435851376|ref|YP_007312962.1| - 0.86 9.1 4.7 6.3 6.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|435851376|ref|YP_007312962.1| - 1.5 8.6 5.7 9.1 6.1 0.3 2.9 3 0 0 3 3 3 0 PhnA Zinc-Ribbon YopX PF09643.5 gi|435851378|ref|YP_007312964.1| - 1.8e-26 92.4 5.9 2.2e-26 92.2 4.1 1.1 1 0 0 1 1 1 1 YopX protein DNA_ligase_ZBD PF03119.11 gi|435851379|ref|YP_007312965.1| - 0.00096 18.8 2.3 0.0017 17.9 1.6 1.4 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain GFA PF04828.9 gi|435851379|ref|YP_007312965.1| - 0.0057 16.5 1.1 0.35 10.8 0.0 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.1 gi|435851379|ref|YP_007312965.1| - 0.0061 16.0 0.2 0.011 15.2 0.2 1.5 1 1 0 1 1 1 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|435851379|ref|YP_007312965.1| - 0.0067 16.0 2.1 0.051 13.2 1.8 1.9 1 1 1 2 2 2 1 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|435851379|ref|YP_007312965.1| - 0.037 13.4 0.4 9.5 5.8 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.2 gi|435851379|ref|YP_007312965.1| - 0.07 12.9 3.1 0.18 11.6 2.2 1.7 1 1 0 1 1 1 0 Double zinc ribbon RRN7 PF11781.3 gi|435851379|ref|YP_007312965.1| - 0.081 12.4 2.1 1.3 8.6 0.2 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DNA_RNApol_7kD PF03604.8 gi|435851379|ref|YP_007312965.1| - 0.085 12.3 1.7 4.9 6.6 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-TFIIIC PF12660.2 gi|435851379|ref|YP_007312965.1| - 0.11 12.4 0.5 0.12 12.3 0.4 1.1 1 0 0 1 1 1 0 Putative zinc-finger of transcription factor IIIC complex zinc-ribbons_6 PF07191.7 gi|435851379|ref|YP_007312965.1| - 0.22 11.3 2.8 0.48 10.2 1.9 1.5 1 1 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|435851379|ref|YP_007312965.1| - 0.28 10.9 4.4 0.98 9.1 3.0 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) IBR PF01485.16 gi|435851379|ref|YP_007312965.1| - 0.32 10.8 2.6 0.41 10.5 1.8 1.2 1 0 0 1 1 1 0 IBR domain Prok-RING_1 PF14446.1 gi|435851379|ref|YP_007312965.1| - 0.38 10.5 2.9 4.9 6.9 2.1 2.1 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.7 gi|435851379|ref|YP_007312965.1| - 0.41 10.4 4.0 4.1 7.2 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|435851379|ref|YP_007312965.1| - 0.5 9.6 5.6 1.7 7.9 4.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|435851379|ref|YP_007312965.1| - 0.7 9.5 4.5 40 3.9 3.1 2.2 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Baculo_IE-1 PF05290.6 gi|435851379|ref|YP_007312965.1| - 1.7 8.3 4.7 5.2 6.7 3.2 1.7 1 1 0 1 1 1 0 Baculovirus immediate-early protein (IE-0) Zn-ribbon_8 PF09723.5 gi|435851379|ref|YP_007312965.1| - 1.8 8.6 4.6 2.2 8.2 0.6 2.2 1 1 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|435851379|ref|YP_007312965.1| - 2.1 7.7 7.1 19 4.6 4.9 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding BMFP PF04380.8 gi|435851380|ref|YP_007312966.1| - 0.028 14.5 0.9 0.066 13.3 0.6 1.6 1 1 0 1 1 1 0 Membrane fusogenic activity NGP1NT PF08153.7 gi|435851381|ref|YP_007312967.1| - 0.0038 17.1 0.1 0.017 15.0 0.0 2.0 1 1 0 1 1 1 1 NGP1NT (NUC091) domain FAD-SLDH PF12318.3 gi|435851381|ref|YP_007312967.1| - 0.08 12.6 0.1 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 Membrane bound FAD containing D-sorbitol dehydrogenase DUF713 PF05218.9 gi|435851381|ref|YP_007312967.1| - 0.083 12.6 0.1 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF713) TF_Zn_Ribbon PF08271.7 gi|435851382|ref|YP_007312968.1| - 0.0018 17.5 3.1 0.0038 16.5 2.1 1.5 1 1 1 2 2 2 1 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|435851382|ref|YP_007312968.1| - 0.0049 16.3 1.4 0.21 11.1 0.2 2.2 1 1 1 2 2 2 1 Topoisomerase DNA binding C4 zinc finger DZR PF12773.2 gi|435851382|ref|YP_007312968.1| - 0.0074 16.0 0.4 0.011 15.5 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon IBR PF01485.16 gi|435851382|ref|YP_007312968.1| - 0.0091 15.8 1.3 0.013 15.3 0.9 1.2 1 0 0 1 1 1 1 IBR domain zinc_ribbon_2 PF13240.1 gi|435851382|ref|YP_007312968.1| - 0.013 14.9 0.8 1.2 8.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|435851382|ref|YP_007312968.1| - 0.014 14.6 0.5 0.57 9.4 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger Lar_restr_allev PF14354.1 gi|435851382|ref|YP_007312968.1| - 0.029 14.6 0.3 0.047 14.0 0.2 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-C3HC4_3 PF13920.1 gi|435851382|ref|YP_007312968.1| - 0.029 14.0 0.7 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-CHY PF05495.7 gi|435851382|ref|YP_007312968.1| - 0.035 14.2 1.0 0.055 13.6 0.7 1.2 1 0 0 1 1 1 0 CHY zinc finger zinc-ribbons_6 PF07191.7 gi|435851382|ref|YP_007312968.1| - 0.045 13.5 0.4 0.082 12.7 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbons Cys_rich_CPXG PF14255.1 gi|435851382|ref|YP_007312968.1| - 0.045 13.5 0.3 4.6 7.1 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-RING_4 PF14570.1 gi|435851382|ref|YP_007312968.1| - 0.055 13.0 1.5 6.6 6.4 0.0 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-Di19 PF05605.7 gi|435851382|ref|YP_007312968.1| - 0.074 13.1 0.9 10 6.3 0.1 2.3 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF1610 PF07754.6 gi|435851382|ref|YP_007312968.1| - 0.087 12.9 2.7 0.24 11.5 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) SprT-like PF10263.4 gi|435851382|ref|YP_007312968.1| - 0.13 11.9 0.1 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 SprT-like family zf-HIT PF04438.11 gi|435851382|ref|YP_007312968.1| - 0.14 11.7 0.6 0.14 11.7 0.4 2.1 2 0 0 2 2 2 0 HIT zinc finger Zn-ribbon_8 PF09723.5 gi|435851382|ref|YP_007312968.1| - 0.22 11.4 2.8 1.2 9.1 1.7 2.1 1 1 2 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|435851382|ref|YP_007312968.1| - 0.25 10.6 3.3 16 4.8 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|435851382|ref|YP_007312968.1| - 0.42 10.4 2.8 0.87 9.4 1.9 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|435851382|ref|YP_007312968.1| - 0.47 10.5 3.1 12 5.9 0.1 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-LITAF-like PF10601.4 gi|435851382|ref|YP_007312968.1| - 0.47 10.3 2.4 11 5.9 0.1 2.2 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|435851382|ref|YP_007312968.1| - 0.49 10.0 3.0 1.6 8.3 2.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|435851382|ref|YP_007312968.1| - 0.52 9.8 2.8 3.7 7.0 1.9 2.1 1 1 0 1 1 1 0 Cysteine-rich KTR zinc_ribbon_4 PF13717.1 gi|435851382|ref|YP_007312968.1| - 0.7 9.6 3.4 3 7.5 2.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain HTH_23 PF13384.1 gi|435851384|ref|YP_007312970.1| - 0.0013 18.3 0.0 0.0031 17.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_1_2 PF13022.1 gi|435851384|ref|YP_007312970.1| - 0.0055 16.4 0.4 0.013 15.2 0.2 1.6 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_Crp_2 PF13545.1 gi|435851384|ref|YP_007312970.1| - 0.0065 16.2 0.0 0.033 13.9 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_3 PF01381.17 gi|435851384|ref|YP_007312970.1| - 0.014 15.2 0.1 0.041 13.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix GntR PF00392.16 gi|435851384|ref|YP_007312970.1| - 0.027 13.8 0.0 0.076 12.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Terminase_5 PF06056.7 gi|435851384|ref|YP_007312970.1| - 0.047 13.2 0.3 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.1 gi|435851384|ref|YP_007312970.1| - 0.071 13.2 0.1 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_38 PF13936.1 gi|435851384|ref|YP_007312970.1| - 0.079 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Homeobox PF00046.24 gi|435851384|ref|YP_007312970.1| - 0.081 12.5 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 Homeobox domain HTH_11 PF08279.7 gi|435851384|ref|YP_007312970.1| - 0.091 12.4 0.3 1.7 8.3 0.0 2.4 2 0 0 2 2 2 0 HTH domain DUF1323 PF07037.6 gi|435851384|ref|YP_007312970.1| - 0.095 12.8 0.2 0.12 12.5 0.1 1.5 1 1 0 1 1 1 0 Putative transcription regulator (DUF1323) Terminase_6 PF03237.10 gi|435851385|ref|YP_007312971.1| - 7.3e-30 103.9 0.2 2.6e-24 85.7 0.0 2.2 2 0 0 2 2 2 2 Terminase-like family PT-HINT PF07591.6 gi|435851385|ref|YP_007312971.1| - 1.3e-08 34.7 0.6 5.3e-06 26.3 0.0 2.3 2 0 0 2 2 2 2 Pretoxin HINT domain Intein_splicing PF14890.1 gi|435851385|ref|YP_007312971.1| - 9.2e-07 28.0 0.5 0.031 13.1 0.2 2.2 2 0 0 2 2 2 2 Intein splicing domain Cnd3 PF12719.2 gi|435851386|ref|YP_007312972.1| - 0.016 14.1 1.4 0.018 14.0 0.9 1.0 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain EDR1 PF14381.1 gi|435851386|ref|YP_007312972.1| - 0.022 14.3 0.3 0.022 14.3 0.2 1.1 1 0 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 HAUS6_N PF14661.1 gi|435851386|ref|YP_007312972.1| - 0.048 13.0 3.7 0.049 12.9 2.6 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Nipped-B_C PF12830.2 gi|435851386|ref|YP_007312972.1| - 0.096 12.3 0.3 0.097 12.3 0.2 1.1 1 0 0 1 1 1 0 Sister chromatid cohesion C-terminus LsmAD PF06741.8 gi|435851386|ref|YP_007312972.1| - 0.3 11.2 2.1 0.82 9.8 1.4 1.8 1 1 0 1 1 1 0 LsmAD domain CTV_P6 PF06706.6 gi|435851390|ref|YP_007312976.1| - 3.7 7.1 5.8 14 5.2 0.0 2.7 3 0 0 3 3 3 0 Citrus tristeza virus 6-kDa protein Phage_Mu_F PF04233.9 gi|435851392|ref|YP_007312978.1| - 1.2e-08 35.4 0.1 3.3e-08 34.0 0.0 1.8 2 0 0 2 2 2 1 Phage Mu protein F like protein DUF4239 PF14023.1 gi|435851392|ref|YP_007312978.1| - 0.058 12.7 0.0 0.099 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) PIN_4 PF13638.1 gi|435851393|ref|YP_007312979.1| - 0.12 12.4 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 PIN domain YchF-GTPase_C PF06071.8 gi|435851393|ref|YP_007312979.1| - 0.13 12.0 0.4 0.19 11.5 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF933) bZIP_1 PF00170.16 gi|435851394|ref|YP_007312980.1| - 0.077 12.9 2.0 0.14 12.1 0.8 1.9 1 1 0 1 1 1 0 bZIP transcription factor HALZ PF02183.13 gi|435851394|ref|YP_007312980.1| - 0.099 12.3 0.8 0.19 11.4 0.5 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper DUF972 PF06156.8 gi|435851394|ref|YP_007312980.1| - 0.51 10.7 2.9 0.97 9.8 2.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF972) APG6 PF04111.7 gi|435851394|ref|YP_007312980.1| - 0.56 9.2 6.8 0.86 8.5 4.7 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 TBPIP PF07106.8 gi|435851394|ref|YP_007312980.1| - 0.68 9.4 5.7 1.2 8.6 3.9 1.4 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DivIC PF04977.10 gi|435851394|ref|YP_007312980.1| - 0.99 8.9 10.5 0.31 10.5 2.2 2.5 2 0 0 2 2 2 0 Septum formation initiator HDPD PF02924.9 gi|435851395|ref|YP_007312981.1| - 0.95 9.2 5.5 0.29 10.9 2.0 1.6 2 0 0 2 2 2 0 Bacteriophage lambda head decoration protein D Linocin_M18 PF04454.7 gi|435851396|ref|YP_007312982.1| - 4.5e-08 32.3 0.1 6.7e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Encapsulating protein for peroxidase NFRKB_winged PF14465.1 gi|435851400|ref|YP_007312986.1| - 0.062 13.1 0.0 0.075 12.8 0.0 1.1 1 0 0 1 1 1 0 NFRKB Winged Helix-like DUF1830 PF08865.6 gi|435851400|ref|YP_007312986.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1830) HK97-gp10_like PF04883.7 gi|435851401|ref|YP_007312987.1| - 1.1e-09 39.0 0.3 2e-09 38.2 0.1 1.5 2 0 0 2 2 2 1 Bacteriophage HK97-gp10, putative tail-component DUF3168 PF11367.3 gi|435851402|ref|YP_007312988.1| - 8.5e-07 29.1 0.0 1e-06 28.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3168) DUF3756 PF12581.3 gi|435851403|ref|YP_007312989.1| - 0.049 13.3 0.2 0.14 11.8 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3756) Ubiq-assoc PF09145.5 gi|435851405|ref|YP_007312991.1| - 0.045 13.6 0.2 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 Ubiquitin-associated PhageMin_Tail PF10145.4 gi|435851406|ref|YP_007312992.1| - 1.9e-37 128.8 23.8 1.9e-37 128.8 16.5 4.4 4 2 1 5 5 5 1 Phage-related minor tail protein Apolipoprotein PF01442.13 gi|435851406|ref|YP_007312992.1| - 3.9e-11 42.8 0.0 1e-07 31.6 0.0 3.6 2 1 1 3 3 3 2 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.7 gi|435851406|ref|YP_007312992.1| - 4.1e-06 26.6 72.3 0.0097 15.7 3.1 8.7 3 1 4 8 8 8 3 Baculovirus polyhedron envelope protein, PEP, C terminus Prominin PF05478.6 gi|435851406|ref|YP_007312992.1| - 6.3e-06 24.0 14.2 2.3e-05 22.1 9.7 1.7 1 1 0 1 1 1 1 Prominin NRN1 PF15056.1 gi|435851406|ref|YP_007312992.1| - 4.1e-05 23.4 18.8 3.9 7.4 0.0 7.6 2 2 4 8 8 8 2 Neuritin protein family SF-assemblin PF06705.6 gi|435851406|ref|YP_007312992.1| - 0.00022 20.4 1.7 0.02 14.0 0.8 2.9 1 1 1 2 2 2 2 SF-assemblin/beta giardin Col_cuticle_N PF01484.12 gi|435851406|ref|YP_007312992.1| - 0.00034 20.2 5.2 11 5.7 0.0 6.5 2 2 4 7 7 7 1 Nematode cuticle collagen N-terminal domain Phasin PF05597.6 gi|435851406|ref|YP_007312992.1| - 0.0053 16.5 3.7 9.6 5.9 0.0 6.1 3 1 4 7 7 7 1 Poly(hydroxyalcanoate) granule associated protein (phasin) HisKA_3 PF07730.8 gi|435851406|ref|YP_007312992.1| - 0.0062 16.8 4.1 26 5.2 0.0 6.4 5 1 4 9 9 7 0 Histidine kinase PhaP_Bmeg PF09602.5 gi|435851406|ref|YP_007312992.1| - 0.26 11.1 5.0 20 4.9 0.0 3.8 3 1 0 3 3 3 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) Carbpep_Y_N PF05388.6 gi|435851406|ref|YP_007312992.1| - 0.51 10.5 23.5 12 6.0 1.4 7.3 3 1 3 6 6 6 0 Carboxypeptidase Y pro-peptide AIP3 PF03915.8 gi|435851406|ref|YP_007312992.1| - 1.5 7.6 12.5 2 7.2 2.0 2.4 1 1 1 2 2 2 0 Actin interacting protein 3 DUF2341 PF10102.4 gi|435851410|ref|YP_007312996.1| - 1.3e-20 73.3 2.5 1.3e-20 73.3 1.8 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF2341) Beta_helix PF13229.1 gi|435851412|ref|YP_007312998.1| - 1.4e-10 41.1 18.3 2.6e-07 30.5 0.3 2.7 1 1 0 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|435851412|ref|YP_007312998.1| - 2.1e-09 37.8 4.3 7.3e-08 32.8 0.0 2.4 1 1 1 2 2 2 2 Pectate lyase superfamily protein Tctex-1 PF03645.8 gi|435851413|ref|YP_007312999.1| - 0.13 12.1 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Tctex-1 family H-kinase_dim PF02895.9 gi|435851415|ref|YP_007313001.1| - 0.064 13.6 0.0 0.11 12.7 0.0 1.6 2 0 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain DUF2286 PF10051.4 gi|435851415|ref|YP_007313001.1| - 0.09 12.4 0.1 7.5 6.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2286) HTH_11 PF08279.7 gi|435851416|ref|YP_007313002.1| - 0.045 13.3 0.1 0.36 10.5 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_41 PF14502.1 gi|435851416|ref|YP_007313002.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_integrase PF00589.17 gi|435851418|ref|YP_007313004.1| - 7.1e-09 35.5 0.1 3.5e-08 33.3 0.0 2.0 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|435851418|ref|YP_007313004.1| - 0.00015 22.0 0.1 0.0012 19.0 0.1 2.5 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|435851418|ref|YP_007313004.1| - 0.003 17.6 1.4 0.092 12.9 0.2 3.2 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain AIRC PF00731.15 gi|435851419|ref|YP_007313005.1| - 1.6e-21 76.1 5.3 2.5e-21 75.5 3.7 1.3 1 0 0 1 1 1 1 AIR carboxylase DUF111 PF01969.12 gi|435851420|ref|YP_007313006.1| - 1.2e-133 445.5 0.4 1.4e-133 445.4 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 DUF475 PF04332.10 gi|435851421|ref|YP_007313007.1| - 3.3e-45 154.9 13.7 4e-45 154.6 9.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.11 gi|435851421|ref|YP_007313007.1| - 1.4e-17 63.6 13.8 1.8e-09 37.2 5.2 2.2 1 1 1 2 2 2 2 Integral membrane protein TerC family DUF4491 PF14898.1 gi|435851421|ref|YP_007313007.1| - 0.031 14.4 0.9 0.031 14.4 0.6 3.0 3 2 0 3 3 3 0 Domain of unknown function (DUF4491) K_trans PF02705.11 gi|435851422|ref|YP_007313008.1| - 3.5e-162 540.4 42.0 4e-162 540.2 29.1 1.0 1 0 0 1 1 1 1 K+ potassium transporter Cation_efflux PF01545.16 gi|435851423|ref|YP_007313009.1| - 2.2e-58 197.5 9.1 2.5e-58 197.4 6.3 1.0 1 0 0 1 1 1 1 Cation efflux family OppC_N PF12911.2 gi|435851424|ref|YP_007313010.1| - 6.1 6.3 6.4 0.32 10.4 0.2 1.9 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C E1-E2_ATPase PF00122.15 gi|435851425|ref|YP_007313011.1| - 2.2e-51 174.0 1.6 2.2e-51 174.0 1.1 2.2 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|435851425|ref|YP_007313011.1| - 2.6e-45 155.4 1.7 2.6e-45 155.4 1.2 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|435851425|ref|YP_007313011.1| - 5.6e-16 59.2 0.0 1e-15 58.4 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|435851425|ref|YP_007313011.1| - 7.1e-06 25.7 0.5 0.0034 16.9 0.3 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Cytochrom_C PF00034.16 gi|435851426|ref|YP_007313012.1| - 6.8e-07 30.0 0.1 1.6e-06 28.8 0.0 1.8 1 1 1 2 2 2 1 Cytochrome c Cytochrome_CBB3 PF13442.1 gi|435851426|ref|YP_007313012.1| - 4.2e-06 26.8 0.0 9.6e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III ODV-E18 PF10717.4 gi|435851426|ref|YP_007313012.1| - 0.036 13.4 0.4 0.069 12.5 0.3 1.4 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Fic PF02661.13 gi|435851429|ref|YP_007313015.1| - 8.7e-09 35.9 0.4 2.9e-08 34.2 0.2 1.7 2 0 0 2 2 2 1 Fic/DOC family DUF3567 PF12091.3 gi|435851429|ref|YP_007313015.1| - 0.12 12.3 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) DUF4445 PF14574.1 gi|435851431|ref|YP_007313017.1| - 1.9e-108 362.3 5.3 3.5e-108 361.4 3.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_9 PF13187.1 gi|435851431|ref|YP_007313017.1| - 8.1e-07 29.2 11.7 1.6e-06 28.2 8.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435851431|ref|YP_007313017.1| - 1.1e-06 28.0 12.0 0.0021 17.5 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435851431|ref|YP_007313017.1| - 1.4e-06 28.5 10.4 3.5e-06 27.3 7.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435851431|ref|YP_007313017.1| - 8.8e-06 25.4 12.5 9.2e-05 22.1 9.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435851431|ref|YP_007313017.1| - 2.2e-05 24.1 15.0 0.0024 17.6 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435851431|ref|YP_007313017.1| - 2.6e-05 24.5 4.5 0.065 13.6 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435851431|ref|YP_007313017.1| - 3e-05 23.8 10.8 7e-05 22.6 7.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851431|ref|YP_007313017.1| - 0.00013 22.6 11.3 0.074 13.8 1.1 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|435851431|ref|YP_007313017.1| - 0.00059 19.6 11.7 0.024 14.5 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|435851431|ref|YP_007313017.1| - 0.0025 18.1 5.7 0.039 14.2 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435851431|ref|YP_007313017.1| - 0.0029 17.8 12.3 0.027 14.7 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435851431|ref|YP_007313017.1| - 0.0048 16.8 12.1 0.098 12.7 1.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain FGGY_N PF00370.16 gi|435851431|ref|YP_007313017.1| - 0.022 14.0 0.0 0.045 13.0 0.0 1.5 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Fer4_3 PF12798.2 gi|435851431|ref|YP_007313017.1| - 0.17 12.5 16.9 1.1 10.0 2.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435851431|ref|YP_007313017.1| - 0.75 10.2 8.5 1.5 9.2 5.9 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain URO-D PF01208.12 gi|435851432|ref|YP_007313018.1| - 1.5e-78 264.1 0.0 1.7e-78 263.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Cpn60_TCP1 PF00118.19 gi|435851433|ref|YP_007313019.1| - 1e-103 347.6 10.3 1.1e-103 347.4 7.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DAGK_acc PF00609.14 gi|435851433|ref|YP_007313019.1| - 0.052 13.6 0.1 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 Diacylglycerol kinase accessory domain Hydantoinase_A PF01968.13 gi|435851434|ref|YP_007313020.1| - 2e-76 256.8 0.0 2e-76 256.8 0.0 1.9 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|435851434|ref|YP_007313020.1| - 3.4e-40 137.4 2.1 9.1e-37 126.2 0.1 2.7 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|435851434|ref|YP_007313020.1| - 7.7e-06 24.4 1.6 0.0068 14.7 0.0 2.2 2 0 0 2 2 2 2 MutL protein StbA PF06406.6 gi|435851434|ref|YP_007313020.1| - 0.055 12.4 0.1 0.11 11.4 0.1 1.4 1 0 0 1 1 1 0 StbA protein DDR PF08841.5 gi|435851434|ref|YP_007313020.1| - 0.089 11.6 2.4 0.12 11.1 0.1 2.0 2 0 0 2 2 2 0 Diol dehydratase reactivase ATPase-like domain BcrAD_BadFG PF01869.15 gi|435851434|ref|YP_007313020.1| - 0.16 11.1 0.9 0.36 10.0 0.0 2.1 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family URO-D PF01208.12 gi|435851435|ref|YP_007313021.1| - 5.2e-59 199.9 0.2 3.3e-57 193.9 0.0 2.5 2 1 1 3 3 3 2 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.14 gi|435851435|ref|YP_007313021.1| - 4e-23 81.5 0.2 1.1e-22 80.1 0.1 1.8 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|435851435|ref|YP_007313021.1| - 1.3e-16 60.3 0.2 3.8e-16 58.8 0.1 1.9 1 0 0 1 1 1 1 B12 binding domain SRP54_N PF02881.14 gi|435851435|ref|YP_007313021.1| - 0.22 11.6 3.6 2.7 8.1 0.1 3.0 3 0 0 3 3 3 0 SRP54-type protein, helical bundle domain DUF1724 PF08350.5 gi|435851436|ref|YP_007313022.1| - 3.3e-24 84.1 0.5 8.3e-24 82.8 0.2 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|435851436|ref|YP_007313022.1| - 9.6e-05 22.1 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|435851436|ref|YP_007313022.1| - 0.00027 20.5 0.1 0.00053 19.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|435851436|ref|YP_007313022.1| - 0.0013 18.1 2.6 0.0022 17.3 1.8 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|435851436|ref|YP_007313022.1| - 0.0075 15.8 0.2 0.015 14.9 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|435851436|ref|YP_007313022.1| - 0.031 14.2 0.1 0.077 13.0 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|435851436|ref|YP_007313022.1| - 0.094 12.4 0.9 0.18 11.5 0.1 1.8 2 0 0 2 2 2 0 MarR family GAF_2 PF13185.1 gi|435851437|ref|YP_007313023.1| - 8e-37 126.9 0.0 9e-21 74.9 0.0 2.3 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.21 gi|435851437|ref|YP_007313023.1| - 7.1e-27 93.3 0.0 1.7e-26 92.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|435851437|ref|YP_007313023.1| - 8.3e-25 86.7 0.2 1.7e-18 66.4 0.3 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|435851437|ref|YP_007313023.1| - 3.2e-20 72.4 0.4 5.6e-11 42.7 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|435851437|ref|YP_007313023.1| - 1.2e-17 63.7 0.1 2.8e-08 33.5 0.0 3.2 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.1 gi|435851437|ref|YP_007313023.1| - 1.2e-12 48.0 0.0 4.2e-06 26.8 0.0 2.3 2 0 0 2 2 2 2 GAF domain GAF PF01590.21 gi|435851437|ref|YP_007313023.1| - 4.5e-10 39.8 0.0 2.3e-05 24.5 0.0 2.4 2 0 0 2 2 2 2 GAF domain PAS_4 PF08448.5 gi|435851437|ref|YP_007313023.1| - 1.3e-07 31.5 0.0 0.025 14.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_11 PF14598.1 gi|435851437|ref|YP_007313023.1| - 8.9e-05 22.4 0.1 0.27 11.2 0.0 3.1 3 0 0 3 3 3 2 PAS domain HATPase_c_3 PF13589.1 gi|435851437|ref|YP_007313023.1| - 0.0012 18.5 0.0 0.0026 17.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|435851437|ref|YP_007313023.1| - 0.0039 16.9 0.0 0.016 15.0 0.0 2.1 1 0 0 1 1 1 1 PAS domain Nup54 PF13874.1 gi|435851437|ref|YP_007313023.1| - 0.0075 15.9 1.0 0.017 14.8 0.3 1.8 2 0 0 2 2 2 1 Nucleoporin complex subunit 54 SIR2_2 PF13289.1 gi|435851438|ref|YP_007313024.1| - 1.9e-12 47.2 1.6 9.8e-12 44.9 0.3 2.9 2 0 0 2 2 2 1 SIR2-like domain SIR2 PF02146.12 gi|435851438|ref|YP_007313024.1| - 0.00056 19.6 1.0 0.016 14.9 0.0 3.5 3 1 0 3 3 3 1 Sir2 family Nup54 PF13874.1 gi|435851438|ref|YP_007313024.1| - 0.084 12.5 2.3 18 4.9 0.0 3.7 3 1 0 3 3 3 0 Nucleoporin complex subunit 54 NUDIX PF00293.23 gi|435851439|ref|YP_007313025.1| - 3.3e-13 49.4 0.0 4.3e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Phage_integrase PF00589.17 gi|435851440|ref|YP_007313026.1| - 3.4e-17 62.6 0.0 6.8e-17 61.6 0.0 1.6 1 1 0 1 1 1 1 Phage integrase family DUF3435 PF11917.3 gi|435851440|ref|YP_007313026.1| - 0.0045 15.7 0.0 0.0093 14.7 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3435) Phage_int_SAM_4 PF13495.1 gi|435851440|ref|YP_007313026.1| - 0.093 13.0 2.4 0.28 11.5 1.0 2.3 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain TPR_1 PF00515.23 gi|435851441|ref|YP_007313027.1| - 4.6e-89 288.7 0.8 7.9e-10 37.9 0.0 11.3 12 0 0 12 12 10 10 Tetratricopeptide repeat TPR_11 PF13414.1 gi|435851441|ref|YP_007313027.1| - 9.3e-80 262.2 1.8 3.2e-16 58.7 0.1 5.7 5 0 0 5 5 5 5 TPR repeat TPR_2 PF07719.12 gi|435851441|ref|YP_007313027.1| - 1.3e-76 246.4 1.2 3.3e-07 29.7 0.0 11.2 11 0 0 11 11 10 10 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435851441|ref|YP_007313027.1| - 9.9e-68 218.8 0.0 1.2e-06 28.2 0.0 10.6 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435851441|ref|YP_007313027.1| - 2.7e-55 180.0 8.5 0.00018 21.0 0.0 11.6 11 0 0 11 11 11 10 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435851441|ref|YP_007313027.1| - 1.4e-47 159.4 0.3 2.2e-10 40.8 0.0 5.6 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|435851441|ref|YP_007313027.1| - 6.7e-41 138.1 1.9 2e-07 30.8 0.0 6.8 4 3 2 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435851441|ref|YP_007313027.1| - 8.9e-40 131.5 5.8 0.00084 19.7 0.0 10.0 2 2 7 9 9 9 8 Tetratricopeptide repeat TPR_6 PF13174.1 gi|435851441|ref|YP_007313027.1| - 9.8e-30 100.9 8.7 0.022 15.1 0.0 11.2 11 0 0 11 11 10 6 Tetratricopeptide repeat Mrr_cat PF04471.7 gi|435851441|ref|YP_007313027.1| - 1e-29 102.6 0.1 2.5e-29 101.3 0.0 1.7 1 0 0 1 1 1 1 Restriction endonuclease TPR_19 PF14559.1 gi|435851441|ref|YP_007313027.1| - 1.8e-29 101.8 1.7 8.6e-06 26.0 0.0 6.0 4 1 2 6 6 6 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435851441|ref|YP_007313027.1| - 1.2e-27 93.5 2.7 0.085 12.6 0.0 10.5 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_9 PF13371.1 gi|435851441|ref|YP_007313027.1| - 5.5e-26 90.2 0.8 2.7e-05 23.9 0.0 6.8 2 1 7 9 9 9 8 Tetratricopeptide repeat Apc3 PF12895.2 gi|435851441|ref|YP_007313027.1| - 2.8e-23 81.8 0.3 1e-07 31.9 0.0 5.1 2 1 4 6 6 5 5 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|435851441|ref|YP_007313027.1| - 1.5e-21 76.7 10.1 0.39 10.5 0.0 10.0 2 2 7 9 9 9 7 Domain of Unknown Function (DUF3856) BTAD PF03704.12 gi|435851441|ref|YP_007313027.1| - 1.7e-18 67.3 0.1 0.0087 16.3 0.0 6.0 3 2 2 6 6 6 5 Bacterial transcriptional activator domain TPR_15 PF13429.1 gi|435851441|ref|YP_007313027.1| - 2.4e-11 43.2 3.9 0.00019 20.5 0.8 3.4 1 1 3 4 4 4 4 Tetratricopeptide repeat MIT PF04212.13 gi|435851441|ref|YP_007313027.1| - 8.6e-11 41.5 18.7 0.051 13.4 0.3 8.7 9 0 0 9 9 8 2 MIT (microtubule interacting and transport) domain TPR_10 PF13374.1 gi|435851441|ref|YP_007313027.1| - 9.3e-11 41.2 11.2 5 7.1 0.0 9.5 10 0 0 10 10 10 0 Tetratricopeptide repeat TPR_5 PF12688.2 gi|435851441|ref|YP_007313027.1| - 6.4e-10 39.1 0.6 0.0078 16.2 0.0 4.9 1 1 3 5 5 5 2 Tetratrico peptide repeat NARP1 PF12569.3 gi|435851441|ref|YP_007313027.1| - 4e-08 32.4 4.5 1.4 7.5 0.0 5.8 3 1 2 6 6 6 3 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|435851441|ref|YP_007313027.1| - 3.7e-05 23.5 0.0 38 4.2 0.0 6.3 7 0 0 7 7 6 0 Fis1 C-terminal tetratricopeptide repeat PPTA PF01239.17 gi|435851441|ref|YP_007313027.1| - 0.00012 21.2 19.1 7.9 6.0 0.1 8.6 9 0 0 9 9 9 0 Protein prenyltransferase alpha subunit repeat DUF3775 PF12616.3 gi|435851441|ref|YP_007313027.1| - 0.00048 19.8 4.0 19 5.1 0.0 6.8 6 1 1 7 7 7 0 Protein of unknown function (DUF3775) Cylicin_N PF15241.1 gi|435851441|ref|YP_007313027.1| - 0.019 14.8 0.2 57 3.6 0.0 4.8 5 0 0 5 5 5 0 Cylicin N-terminus Membr_traf_MHD PF10540.4 gi|435851441|ref|YP_007313027.1| - 0.082 12.7 0.2 0.26 11.0 0.1 2.0 1 1 0 1 1 1 0 Munc13 (mammalian uncoordinated) homology domain TPR_21 PF09976.4 gi|435851441|ref|YP_007313027.1| - 0.11 12.4 17.4 0.8 9.6 0.0 6.4 6 2 1 7 7 6 0 Tetratricopeptide repeat TPR_20 PF14561.1 gi|435851441|ref|YP_007313027.1| - 0.12 12.5 1.1 16 5.7 0.0 4.2 3 1 3 6 6 5 0 Tetratricopeptide repeat TPR_3 PF07720.7 gi|435851441|ref|YP_007313027.1| - 0.16 11.7 17.9 52 3.7 0.0 7.5 8 0 0 8 8 7 0 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|435851441|ref|YP_007313027.1| - 0.17 11.1 4.6 52 3.2 0.0 5.1 6 0 0 6 6 6 0 SHNi-TPR Tn7_Tnp_TnsA_C PF08721.6 gi|435851441|ref|YP_007313027.1| - 0.34 10.9 3.9 0.93 9.5 0.0 3.5 4 0 0 4 4 4 0 TnsA endonuclease C terminal Nitroreductase PF00881.19 gi|435851442|ref|YP_007313028.1| - 1.5e-26 93.1 0.0 2e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Podovirus_Gp16 PF05894.7 gi|435851442|ref|YP_007313028.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.1 1 0 0 1 1 1 0 Podovirus DNA encapsidation protein (Gp16) Vitellogenin_N PF01347.17 gi|435851442|ref|YP_007313028.1| - 0.18 9.9 0.0 0.22 9.7 0.0 1.1 1 0 0 1 1 1 0 Lipoprotein amino terminal region Met_10 PF02475.11 gi|435851443|ref|YP_007313029.1| - 5.2e-61 205.7 0.1 6.7e-61 205.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|435851443|ref|YP_007313029.1| - 3.8e-11 42.6 0.1 6.4e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|435851443|ref|YP_007313029.1| - 6.5e-11 42.7 0.0 1.4e-10 41.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435851443|ref|YP_007313029.1| - 1.8e-10 40.5 0.0 2.8e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435851443|ref|YP_007313029.1| - 2.8e-08 33.7 0.1 5.7e-08 32.8 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|435851443|ref|YP_007313029.1| - 1.1e-05 25.0 0.0 1.8e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.11 gi|435851443|ref|YP_007313029.1| - 3.2e-05 23.0 0.1 4.4e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.8 gi|435851443|ref|YP_007313029.1| - 4.4e-05 22.7 0.1 9.2e-05 21.6 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|435851443|ref|YP_007313029.1| - 0.00012 21.5 0.0 0.00022 20.6 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_4 PF02390.12 gi|435851443|ref|YP_007313029.1| - 0.00017 20.7 0.0 0.00029 19.9 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase ADH_zinc_N PF00107.21 gi|435851443|ref|YP_007313029.1| - 0.00018 21.0 0.0 0.0005 19.6 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase N6_Mtase PF02384.11 gi|435851443|ref|YP_007313029.1| - 0.004 16.2 0.0 0.023 13.7 0.0 1.9 2 0 0 2 2 2 1 N-6 DNA Methylase Methyltransf_24 PF13578.1 gi|435851443|ref|YP_007313029.1| - 0.0051 17.6 0.0 0.08 13.7 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain GidB PF02527.10 gi|435851443|ref|YP_007313029.1| - 0.02 14.0 0.0 0.032 13.3 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_21 PF05050.7 gi|435851443|ref|YP_007313029.1| - 0.028 14.3 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase FkbM domain tRNA_U5-meth_tr PF05958.6 gi|435851443|ref|YP_007313029.1| - 0.041 12.5 0.0 0.061 11.9 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_23 PF13489.1 gi|435851443|ref|YP_007313029.1| - 0.042 13.5 0.0 0.37 10.4 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain RrnaAD PF00398.15 gi|435851443|ref|YP_007313029.1| - 0.042 12.8 0.0 0.063 12.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|435851443|ref|YP_007313029.1| - 0.05 14.0 0.0 0.14 12.7 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|435851443|ref|YP_007313029.1| - 0.071 12.5 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.14 gi|435851443|ref|YP_007313029.1| - 0.084 12.3 0.0 0.17 11.4 0.0 1.5 2 0 0 2 2 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|435851443|ref|YP_007313029.1| - 0.089 13.2 0.0 0.22 12.0 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain PRMT5 PF05185.11 gi|435851443|ref|YP_007313029.1| - 0.11 11.4 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase LysE PF01810.13 gi|435851444|ref|YP_007313030.1| - 9.4e-28 96.7 15.3 1.1e-27 96.5 10.6 1.0 1 0 0 1 1 1 1 LysE type translocator TFIIB PF00382.14 gi|435851445|ref|YP_007313031.1| - 1.6e-47 159.1 1.6 2.6e-24 84.7 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|435851445|ref|YP_007313031.1| - 1.7e-18 65.6 1.8 3.1e-18 64.8 0.8 1.8 2 0 0 2 2 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|435851445|ref|YP_007313031.1| - 2.8e-05 23.3 0.5 0.017 14.4 0.1 3.1 2 0 0 2 2 2 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|435851445|ref|YP_007313031.1| - 0.00037 20.0 0.3 0.00096 18.7 0.2 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|435851445|ref|YP_007313031.1| - 0.001 18.2 0.3 0.001 18.2 0.2 1.9 2 0 0 2 2 1 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|435851445|ref|YP_007313031.1| - 0.01 15.2 0.6 0.023 14.1 0.4 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain HTH_AsnC-type PF13404.1 gi|435851445|ref|YP_007313031.1| - 0.024 14.1 0.7 0.084 12.4 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Lar_restr_allev PF14354.1 gi|435851445|ref|YP_007313031.1| - 0.027 14.7 0.6 0.27 11.5 0.2 2.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar Ribosomal_S27e PF01667.12 gi|435851445|ref|YP_007313031.1| - 0.029 13.9 0.4 0.029 13.9 0.3 1.8 2 0 0 2 2 2 0 Ribosomal protein S27 DZR PF12773.2 gi|435851445|ref|YP_007313031.1| - 0.04 13.7 2.5 0.088 12.6 0.5 2.2 2 0 0 2 2 2 0 Double zinc ribbon RPA_interact_C PF14768.1 gi|435851445|ref|YP_007313031.1| - 0.047 14.0 0.3 3.9 7.9 0.0 2.4 2 0 0 2 2 2 0 Replication protein A interacting C-terminal Elf1 PF05129.8 gi|435851445|ref|YP_007313031.1| - 0.057 13.1 1.9 0.097 12.3 0.4 2.0 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Cyclin_C PF02984.14 gi|435851445|ref|YP_007313031.1| - 0.16 11.9 0.0 7.6 6.4 0.0 2.4 2 0 0 2 2 2 0 Cyclin, C-terminal domain zf-C4_Topoisom PF01396.14 gi|435851445|ref|YP_007313031.1| - 0.25 10.8 1.4 0.3 10.6 0.3 1.7 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf-CHY PF05495.7 gi|435851445|ref|YP_007313031.1| - 0.3 11.2 2.2 0.71 10.0 0.7 2.1 2 0 0 2 2 2 0 CHY zinc finger HypA PF01155.14 gi|435851445|ref|YP_007313031.1| - 0.3 10.7 3.6 0.69 9.6 0.6 2.6 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family HTH_31 PF13560.1 gi|435851445|ref|YP_007313031.1| - 0.33 11.1 3.7 3.5 7.9 0.0 3.4 2 1 1 3 3 3 0 Helix-turn-helix domain DNA_RNApol_7kD PF03604.8 gi|435851445|ref|YP_007313031.1| - 0.59 9.6 6.0 0.58 9.6 0.1 3.0 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Stc1 PF12898.2 gi|435851445|ref|YP_007313031.1| - 0.67 10.0 5.6 0.71 9.9 0.6 2.6 3 0 0 3 3 2 0 Stc1 domain Zn_Tnp_IS1595 PF12760.2 gi|435851445|ref|YP_007313031.1| - 1.1 9.0 4.0 0.28 11.0 0.2 2.0 2 0 0 2 2 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|435851445|ref|YP_007313031.1| - 2.3 8.2 7.6 0.57 10.1 0.2 2.9 2 1 1 3 3 3 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|435851445|ref|YP_007313031.1| - 4.6 7.1 7.5 1.1 9.1 2.5 2.0 2 1 0 2 2 2 0 PhnA Zinc-Ribbon Gar1 PF04410.9 gi|435851446|ref|YP_007313032.1| - 1.6e-09 37.4 0.0 1.8e-09 37.2 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region DUF1059 PF06348.6 gi|435851447|ref|YP_007313033.1| - 0.00035 20.3 1.4 0.00048 19.8 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) NTR PF01759.16 gi|435851447|ref|YP_007313033.1| - 0.023 14.2 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 UNC-6/NTR/C345C module Tmemb_185A PF10269.4 gi|435851448|ref|YP_007313034.1| - 0.015 14.8 6.8 0.026 14.1 4.7 1.4 1 0 0 1 1 1 0 Transmembrane Fragile-X-F protein DUF3317 PF11779.3 gi|435851448|ref|YP_007313034.1| - 0.42 10.0 4.8 0.97 8.9 3.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3317) DUF4381 PF14316.1 gi|435851448|ref|YP_007313034.1| - 3.1 7.9 6.5 4.5 7.3 4.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) XPG_I PF00867.13 gi|435851449|ref|YP_007313035.1| - 6.6e-25 86.9 0.0 1.3e-24 86.1 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|435851449|ref|YP_007313035.1| - 3.5e-23 81.7 0.0 5.9e-23 81.0 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|435851449|ref|YP_007313035.1| - 0.0013 18.8 0.0 0.0034 17.6 0.0 1.8 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|435851449|ref|YP_007313035.1| - 0.043 13.6 0.0 0.13 12.1 0.0 1.8 1 1 0 1 1 1 0 Helix-hairpin-helix motif MS_channel PF00924.13 gi|435851450|ref|YP_007313036.1| - 4.5e-34 117.5 0.0 7.3e-34 116.9 0.0 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel AzlD PF05437.7 gi|435851450|ref|YP_007313036.1| - 0.9 9.5 4.4 1.4 8.9 3.1 1.3 1 0 0 1 1 1 0 Branched-chain amino acid transport protein (AzlD) ABC2_membrane PF01061.19 gi|435851452|ref|YP_007313038.1| - 2.8e-27 95.2 27.9 2.8e-27 95.2 19.4 2.0 1 1 1 2 2 2 1 ABC-2 type transporter Wzt_C PF14524.1 gi|435851453|ref|YP_007313039.1| - 1.6e-34 118.6 0.0 2.7e-34 117.9 0.0 1.4 1 0 0 1 1 1 1 Wzt C-terminal domain ABC_tran PF00005.22 gi|435851453|ref|YP_007313039.1| - 8.2e-24 84.4 0.0 4.2e-23 82.1 0.0 2.2 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|435851453|ref|YP_007313039.1| - 6.8e-12 45.9 4.9 1.2e-05 25.4 0.4 2.9 2 1 1 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|435851453|ref|YP_007313039.1| - 1e-07 32.5 0.4 5e-07 30.2 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|435851453|ref|YP_007313039.1| - 1.6e-06 27.4 0.2 0.006 15.6 0.2 2.4 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|435851453|ref|YP_007313039.1| - 3.5e-06 26.4 0.0 8.5e-06 25.2 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|435851453|ref|YP_007313039.1| - 0.00062 19.2 0.3 0.26 10.6 0.1 2.3 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|435851453|ref|YP_007313039.1| - 0.0031 16.7 0.4 0.037 13.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|435851453|ref|YP_007313039.1| - 0.0087 16.2 0.1 0.062 13.4 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|435851453|ref|YP_007313039.1| - 0.018 15.1 0.0 0.039 14.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|435851453|ref|YP_007313039.1| - 0.036 13.7 0.1 0.19 11.3 0.0 2.2 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|435851453|ref|YP_007313039.1| - 0.081 12.1 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|435851453|ref|YP_007313039.1| - 0.11 13.3 0.3 0.28 11.9 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|435851453|ref|YP_007313039.1| - 0.17 11.8 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Methyltransf_23 PF13489.1 gi|435851454|ref|YP_007313040.1| - 2.3e-15 56.6 0.1 1.5e-14 54.0 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|435851454|ref|YP_007313040.1| - 5.3e-12 45.5 0.1 1.2e-11 44.3 0.1 1.5 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.7 gi|435851454|ref|YP_007313040.1| - 1.4e-07 31.9 0.0 3.2e-07 30.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435851454|ref|YP_007313040.1| - 9.4e-07 28.5 2.4 4.6e-06 26.2 0.1 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435851454|ref|YP_007313040.1| - 8.8e-06 26.2 0.1 2.7e-05 24.7 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435851454|ref|YP_007313040.1| - 2.3e-05 24.6 0.1 5.1e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|435851454|ref|YP_007313040.1| - 0.00017 21.9 0.0 0.00062 20.1 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435851454|ref|YP_007313040.1| - 0.00018 21.5 0.0 0.00057 19.9 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|435851454|ref|YP_007313040.1| - 0.018 15.0 0.0 0.047 13.6 0.0 1.8 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_4 PF02390.12 gi|435851454|ref|YP_007313040.1| - 0.095 11.7 0.9 0.26 10.3 0.0 2.2 2 0 0 2 2 2 0 Putative methyltransferase EcoEI_R_C PF08463.5 gi|435851454|ref|YP_007313040.1| - 0.24 11.2 4.7 0.64 9.8 3.3 1.8 1 1 0 1 1 1 0 EcoEI R protein C-terminal DUF2856 PF11043.3 gi|435851454|ref|YP_007313040.1| - 1.4 9.1 4.5 1.5 8.9 0.6 2.8 3 1 1 4 4 4 0 Protein of unknown function (DUF2856) IncA PF04156.9 gi|435851454|ref|YP_007313040.1| - 3.9 7.0 8.4 6.2 6.3 5.8 1.3 1 0 0 1 1 1 0 IncA protein Glycos_transf_1 PF00534.15 gi|435851455|ref|YP_007313041.1| - 6.9e-21 74.4 0.0 6.3e-20 71.2 0.0 2.1 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|435851455|ref|YP_007313041.1| - 1e-12 48.1 0.0 4.1e-12 46.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|435851455|ref|YP_007313041.1| - 6.1e-12 45.8 0.0 1.3e-11 44.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|435851455|ref|YP_007313041.1| - 0.004 16.9 0.0 0.035 13.8 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|435851455|ref|YP_007313041.1| - 0.0055 16.8 0.0 0.35 10.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain DUF4513 PF14983.1 gi|435851455|ref|YP_007313041.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4513) Glycos_transf_1 PF00534.15 gi|435851456|ref|YP_007313042.1| - 1.6e-20 73.2 0.0 5.7e-20 71.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|435851456|ref|YP_007313042.1| - 3.7e-10 40.0 0.0 7.2e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|435851456|ref|YP_007313042.1| - 0.00038 20.6 0.0 0.0014 18.8 0.0 2.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|435851457|ref|YP_007313043.1| - 1.5e-19 70.1 0.0 3.7e-19 68.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|435851457|ref|YP_007313043.1| - 2.3e-11 43.9 0.0 5.3e-11 42.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|435851457|ref|YP_007313043.1| - 2.9e-09 37.0 0.0 7.4e-09 35.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 HIT PF01230.18 gi|435851458|ref|YP_007313044.1| - 4.1e-26 91.3 0.0 5.9e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|435851458|ref|YP_007313044.1| - 5.4e-14 52.4 0.0 6.7e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|435851458|ref|YP_007313044.1| - 0.0059 16.2 0.1 0.0082 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 PMT_2 PF13231.1 gi|435851459|ref|YP_007313045.1| - 0.00022 21.1 20.5 0.00022 21.1 14.2 2.8 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Zip PF02535.17 gi|435851459|ref|YP_007313045.1| - 0.0026 16.8 0.3 0.0064 15.5 0.2 1.6 1 0 0 1 1 1 1 ZIP Zinc transporter Pex14_N PF04695.8 gi|435851459|ref|YP_007313045.1| - 0.32 11.0 5.4 0.67 9.9 3.8 1.5 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region SelP_N PF04592.9 gi|435851459|ref|YP_007313045.1| - 1.4 8.2 13.6 2.5 7.4 9.4 1.3 1 0 0 1 1 1 0 Selenoprotein P, N terminal region Macoilin PF09726.4 gi|435851459|ref|YP_007313045.1| - 9.4 4.3 19.9 14 3.8 13.8 1.1 1 0 0 1 1 1 0 Transmembrane protein UPF0104 PF03706.8 gi|435851460|ref|YP_007313046.1| - 1.2e-31 110.0 27.4 1.5e-31 109.7 19.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Methyltransf_23 PF13489.1 gi|435851461|ref|YP_007313047.1| - 5.4e-19 68.4 0.0 7.7e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435851461|ref|YP_007313047.1| - 3e-14 52.8 0.1 4.1e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|435851461|ref|YP_007313047.1| - 1.6e-11 44.5 0.1 2.3e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|435851461|ref|YP_007313047.1| - 2.3e-11 44.0 0.3 4.1e-11 43.2 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435851461|ref|YP_007313047.1| - 1.8e-10 41.3 0.0 2.6e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|435851461|ref|YP_007313047.1| - 1.2e-06 27.8 0.1 1.6e-06 27.4 0.1 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_26 PF13659.1 gi|435851461|ref|YP_007313047.1| - 3.7e-06 26.9 0.1 7.2e-06 26.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|435851461|ref|YP_007313047.1| - 6.8e-06 25.6 0.0 1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_25 PF13649.1 gi|435851461|ref|YP_007313047.1| - 1e-05 25.8 0.1 1.9e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_PK PF05891.7 gi|435851461|ref|YP_007313047.1| - 1.7e-05 24.2 0.1 2.3e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase MTS PF05175.9 gi|435851461|ref|YP_007313047.1| - 2.4e-05 23.7 0.1 4.4e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|435851461|ref|YP_007313047.1| - 4e-05 22.8 0.1 5.7e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|435851461|ref|YP_007313047.1| - 7.8e-05 21.5 0.1 8.6e-05 21.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|435851461|ref|YP_007313047.1| - 0.00011 21.9 0.1 0.00016 21.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|435851461|ref|YP_007313047.1| - 0.00042 19.3 0.0 0.00054 19.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) MetW PF07021.7 gi|435851461|ref|YP_007313047.1| - 0.00062 19.2 0.1 0.0011 18.3 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|435851461|ref|YP_007313047.1| - 0.0011 18.0 0.1 0.0013 17.7 0.1 1.3 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase DREV PF05219.7 gi|435851461|ref|YP_007313047.1| - 0.004 16.0 0.1 0.0058 15.5 0.1 1.2 1 0 0 1 1 1 1 DREV methyltransferase PrmA PF06325.8 gi|435851461|ref|YP_007313047.1| - 0.018 14.1 0.3 0.024 13.7 0.2 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|435851461|ref|YP_007313047.1| - 0.04 13.0 0.0 0.069 12.2 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family MethyltransfD12 PF02086.10 gi|435851461|ref|YP_007313047.1| - 0.049 13.0 0.0 0.068 12.6 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase PCMT PF01135.14 gi|435851461|ref|YP_007313047.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Glycos_transf_2 PF00535.21 gi|435851462|ref|YP_007313048.1| - 3.1e-27 95.3 0.2 4.5e-27 94.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|435851462|ref|YP_007313048.1| - 1.5e-09 37.9 0.0 2.6e-09 37.2 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|435851462|ref|YP_007313048.1| - 9.4e-08 31.4 0.2 1.7e-07 30.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|435851462|ref|YP_007313048.1| - 0.02 15.1 0.0 0.063 13.5 0.0 1.9 1 1 0 1 1 1 0 Glycosyl transferase family 2 Lip_A_acyltrans PF03279.8 gi|435851462|ref|YP_007313048.1| - 0.046 12.5 0.0 0.075 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial lipid A biosynthesis acyltransferase Glyco_transf_7N PF13733.1 gi|435851462|ref|YP_007313048.1| - 0.11 11.9 0.0 0.53 9.6 0.0 2.0 1 1 1 2 2 2 0 N-terminal region of glycosyl transferase group 7 FKBP_C PF00254.23 gi|435851463|ref|YP_007313049.1| - 1.1e-21 76.5 0.1 2e-21 75.8 0.1 1.5 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase cobW PF02492.14 gi|435851464|ref|YP_007313050.1| - 4.3e-37 127.2 0.7 7.1e-37 126.5 0.5 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|435851464|ref|YP_007313050.1| - 6.2e-05 22.7 0.2 0.00018 21.1 0.1 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|435851464|ref|YP_007313050.1| - 0.0025 17.2 0.1 0.0067 15.8 0.1 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CbiA PF01656.18 gi|435851464|ref|YP_007313050.1| - 0.0031 16.9 0.3 0.0081 15.5 0.2 1.7 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|435851464|ref|YP_007313050.1| - 0.0047 15.7 0.8 0.0047 15.7 0.6 1.6 2 0 0 2 2 2 1 ArgK protein AAA_10 PF12846.2 gi|435851464|ref|YP_007313050.1| - 0.012 15.1 0.0 0.022 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain ATP_bind_1 PF03029.12 gi|435851464|ref|YP_007313050.1| - 0.014 14.9 0.8 0.57 9.6 0.1 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|435851464|ref|YP_007313050.1| - 0.02 14.6 0.1 0.13 12.0 0.1 2.1 2 0 0 2 2 2 0 Part of AAA domain FeoB_N PF02421.13 gi|435851464|ref|YP_007313050.1| - 0.022 14.0 0.5 0.11 11.7 0.2 2.2 3 0 0 3 3 3 0 Ferrous iron transport protein B KTI12 PF08433.5 gi|435851464|ref|YP_007313050.1| - 0.082 12.0 0.1 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 T2SE PF00437.15 gi|435851464|ref|YP_007313050.1| - 0.089 11.6 0.3 0.17 10.7 0.2 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|435851464|ref|YP_007313050.1| - 0.096 11.2 0.5 0.14 10.7 0.3 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.1 gi|435851464|ref|YP_007313050.1| - 0.12 12.6 2.2 0.17 12.2 0.6 2.0 2 0 0 2 2 2 0 AAA domain HATPase_c PF02518.21 gi|435851465|ref|YP_007313051.1| - 1.7e-33 114.6 0.0 3.6e-33 113.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MEDS PF14417.1 gi|435851465|ref|YP_007313051.1| - 2.1e-24 85.6 0.0 4.8e-24 84.4 0.0 1.6 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain GAF_2 PF13185.1 gi|435851465|ref|YP_007313051.1| - 5.8e-23 82.0 0.0 2.5e-22 79.9 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|435851465|ref|YP_007313051.1| - 1.2e-18 67.3 0.0 8.1e-09 35.7 0.0 2.9 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|435851465|ref|YP_007313051.1| - 5.3e-18 64.7 0.1 5.3e-18 64.7 0.1 2.8 2 1 1 3 3 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|435851465|ref|YP_007313051.1| - 1.8e-17 63.3 0.0 7.7e-08 32.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|435851465|ref|YP_007313051.1| - 2.9e-16 59.2 0.0 8.6e-07 28.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|435851465|ref|YP_007313051.1| - 8.1e-13 47.7 0.1 4.6e-07 29.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|435851465|ref|YP_007313051.1| - 1.6e-08 34.5 0.2 0.15 12.0 0.0 4.3 3 1 0 3 3 3 3 PAS fold PAS_10 PF13596.1 gi|435851465|ref|YP_007313051.1| - 7.6e-08 32.5 0.0 0.00011 22.3 0.0 2.8 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|435851465|ref|YP_007313051.1| - 6.8e-05 22.9 0.0 0.00051 20.1 0.0 2.2 2 0 0 2 2 2 1 GAF domain HATPase_c_5 PF14501.1 gi|435851465|ref|YP_007313051.1| - 0.0021 17.7 0.0 0.0045 16.6 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|435851465|ref|YP_007313051.1| - 0.0038 16.8 1.0 0.0067 16.0 0.0 1.9 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|435851465|ref|YP_007313051.1| - 0.0066 16.5 0.0 1.5 8.9 0.0 2.9 2 1 0 2 2 2 1 PAS fold AKAP7_NLS PF10469.4 gi|435851465|ref|YP_007313051.1| - 0.0091 15.7 0.1 0.022 14.4 0.1 1.5 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain GSDH PF07995.6 gi|435851466|ref|YP_007313052.1| - 6.6e-30 104.3 0.0 1.5e-29 103.1 0.0 1.5 2 0 0 2 2 2 1 Glucose / Sorbosone dehydrogenase NHL PF01436.16 gi|435851466|ref|YP_007313052.1| - 0.00023 20.9 0.1 0.68 10.0 0.1 3.1 3 0 0 3 3 3 2 NHL repeat ABC1 PF03109.11 gi|435851467|ref|YP_007313053.1| - 5.1e-29 100.6 0.0 9.9e-29 99.7 0.0 1.5 1 0 0 1 1 1 1 ABC1 family RIO1 PF01163.17 gi|435851467|ref|YP_007313053.1| - 5.2e-09 35.7 0.0 2.3e-08 33.5 0.0 1.9 2 0 0 2 2 2 1 RIO1 family WaaY PF06176.6 gi|435851467|ref|YP_007313053.1| - 8.5e-06 25.1 0.2 1.9e-05 24.0 0.1 1.7 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) APH PF01636.18 gi|435851467|ref|YP_007313053.1| - 0.00019 21.2 0.1 0.00095 18.9 0.1 1.9 1 1 1 2 2 2 1 Phosphotransferase enzyme family dCMP_cyt_deam_1 PF00383.17 gi|435851468|ref|YP_007313054.1| - 7.8e-23 80.0 0.0 9.7e-23 79.7 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|435851468|ref|YP_007313054.1| - 0.0094 15.8 0.5 0.059 13.2 0.1 1.9 1 1 1 2 2 2 1 Bd3614-like deaminase XOO_2897-deam PF14440.1 gi|435851468|ref|YP_007313054.1| - 0.12 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase AAL_decarboxy PF03306.8 gi|435851469|ref|YP_007313055.1| - 8e-89 296.4 0.0 9.2e-89 296.2 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase TRAM PF01938.15 gi|435851470|ref|YP_007313056.1| - 3.4e-18 65.1 2.0 3.8e-18 65.0 1.4 1.0 1 0 0 1 1 1 1 TRAM domain DUF4265 PF14085.1 gi|435851470|ref|YP_007313056.1| - 0.11 12.2 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4265) eIF-1a PF01176.14 gi|435851471|ref|YP_007313057.1| - 2e-19 68.7 0.1 2.8e-19 68.2 0.1 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 INT_SG_DDX_CT_C PF15300.1 gi|435851471|ref|YP_007313057.1| - 0.13 11.7 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 INTS6/SAGE1/DDX26B/CT45 C-terminus DUF2088 PF09861.4 gi|435851472|ref|YP_007313058.1| - 2.9e-57 193.0 0.0 4.1e-57 192.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) Mur_ligase_C PF02875.16 gi|435851472|ref|YP_007313058.1| - 0.01 15.8 0.0 0.029 14.4 0.0 1.7 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain DEAD PF00270.24 gi|435851473|ref|YP_007313059.1| - 3.4e-46 156.8 0.1 6.9e-46 155.8 0.1 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|435851473|ref|YP_007313059.1| - 6.3e-28 96.4 0.1 2.4e-26 91.4 0.1 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DbpA PF03880.10 gi|435851473|ref|YP_007313059.1| - 3.1e-11 42.7 0.0 1.2e-10 40.8 0.0 2.0 2 0 0 2 2 2 1 DbpA RNA binding domain CMS1 PF14617.1 gi|435851473|ref|YP_007313059.1| - 3.3e-06 26.3 0.7 8e-06 25.0 0.1 1.9 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit ResIII PF04851.10 gi|435851473|ref|YP_007313059.1| - 4.6e-05 23.3 0.0 0.00012 21.9 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|435851473|ref|YP_007313059.1| - 0.093 12.2 0.0 0.23 11.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|435851474|ref|YP_007313060.1| - 1.5e-50 170.5 0.0 2.3e-50 169.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|435851474|ref|YP_007313060.1| - 1.2e-08 34.8 0.1 3.9e-08 33.2 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|435851474|ref|YP_007313060.1| - 2.7e-07 30.9 0.1 7.3e-07 29.5 0.0 1.6 1 1 0 1 1 1 1 ABC transporter FeoB_N PF02421.13 gi|435851474|ref|YP_007313060.1| - 2.7e-06 26.7 0.3 0.072 12.3 0.0 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B Septin PF00735.13 gi|435851474|ref|YP_007313060.1| - 3.4e-06 26.2 0.0 5.4e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Septin PduV-EutP PF10662.4 gi|435851474|ref|YP_007313060.1| - 5e-06 26.0 0.3 0.054 12.9 0.1 2.5 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|435851474|ref|YP_007313060.1| - 1.9e-05 24.1 0.6 0.0078 15.6 0.0 2.3 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain AAA_29 PF13555.1 gi|435851474|ref|YP_007313060.1| - 0.00013 21.4 0.1 0.00027 20.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Miro PF08477.8 gi|435851474|ref|YP_007313060.1| - 0.00023 21.6 0.1 0.00067 20.1 0.0 1.8 2 0 0 2 2 1 1 Miro-like protein AAA_16 PF13191.1 gi|435851474|ref|YP_007313060.1| - 0.00024 21.1 0.0 0.00076 19.5 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|435851474|ref|YP_007313060.1| - 0.00055 19.4 0.1 0.0021 17.5 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain Dynamin_N PF00350.18 gi|435851474|ref|YP_007313060.1| - 0.0017 18.1 3.0 0.037 13.8 0.3 2.9 2 1 1 3 3 3 1 Dynamin family AAA_22 PF13401.1 gi|435851474|ref|YP_007313060.1| - 0.0021 18.2 0.0 0.026 14.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|435851474|ref|YP_007313060.1| - 0.0021 17.9 0.0 0.016 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|435851474|ref|YP_007313060.1| - 0.0021 17.5 0.1 0.64 9.4 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Guanylate_kin PF00625.16 gi|435851474|ref|YP_007313060.1| - 0.0035 16.7 0.0 0.007 15.8 0.0 1.5 1 0 0 1 1 1 1 Guanylate kinase MobB PF03205.9 gi|435851474|ref|YP_007313060.1| - 0.0068 16.1 0.4 0.021 14.5 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1_C PF08438.5 gi|435851474|ref|YP_007313060.1| - 0.0097 16.1 0.8 0.11 12.7 0.1 2.7 2 1 0 2 2 2 1 GTPase of unknown function C-terminal AAA_17 PF13207.1 gi|435851474|ref|YP_007313060.1| - 0.0099 16.7 0.3 0.032 15.0 0.2 1.9 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|435851474|ref|YP_007313060.1| - 0.018 13.8 0.7 0.066 11.9 0.0 2.1 1 1 1 2 2 2 0 ArgK protein IstB_IS21 PF01695.12 gi|435851474|ref|YP_007313060.1| - 0.018 14.4 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AIG1 PF04548.11 gi|435851474|ref|YP_007313060.1| - 0.018 14.1 0.0 0.037 13.1 0.0 1.5 1 0 0 1 1 1 0 AIG1 family Ras PF00071.17 gi|435851474|ref|YP_007313060.1| - 0.021 14.2 0.1 0.5 9.7 0.0 2.3 2 0 0 2 2 2 0 Ras family AAA_25 PF13481.1 gi|435851474|ref|YP_007313060.1| - 0.027 13.8 0.1 0.047 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|435851474|ref|YP_007313060.1| - 0.028 14.4 0.0 0.057 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|435851474|ref|YP_007313060.1| - 0.031 14.1 0.0 0.098 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|435851474|ref|YP_007313060.1| - 0.033 14.3 0.0 0.073 13.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.8 gi|435851474|ref|YP_007313060.1| - 0.041 12.8 0.0 0.069 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) KAP_NTPase PF07693.9 gi|435851474|ref|YP_007313060.1| - 0.049 12.6 0.0 0.23 10.4 0.0 2.0 2 0 0 2 2 2 0 KAP family P-loop domain Sigma54_activat PF00158.21 gi|435851474|ref|YP_007313060.1| - 0.049 13.1 0.0 0.11 11.9 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|435851474|ref|YP_007313060.1| - 0.054 12.3 0.0 0.088 11.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF87 PF01935.12 gi|435851474|ref|YP_007313060.1| - 0.065 13.0 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|435851474|ref|YP_007313060.1| - 0.079 13.2 0.0 0.23 11.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|435851474|ref|YP_007313060.1| - 0.094 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|435851474|ref|YP_007313060.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain PAS_3 PF08447.6 gi|435851475|ref|YP_007313061.1| - 2.5e-12 46.7 0.0 2.7e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|435851475|ref|YP_007313061.1| - 0.00023 21.4 0.1 0.00025 21.3 0.0 1.0 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|435851475|ref|YP_007313061.1| - 0.011 15.8 0.0 0.011 15.7 0.0 1.1 1 0 0 1 1 1 0 PAS fold PAS PF00989.19 gi|435851475|ref|YP_007313061.1| - 0.062 13.0 0.0 0.07 12.9 0.0 1.1 1 0 0 1 1 1 0 PAS fold UPF0118 PF01594.11 gi|435851476|ref|YP_007313062.1| - 1.7e-46 158.7 44.6 2e-46 158.4 30.9 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 PAGK PF15284.1 gi|435851476|ref|YP_007313062.1| - 0.063 13.0 0.7 0.32 10.7 0.5 2.2 1 0 0 1 1 1 0 Phage-encoded virulence factor Dicistro_VP4 PF11492.3 gi|435851476|ref|YP_007313062.1| - 0.12 12.4 3.1 0.15 12.0 0.0 2.5 3 0 0 3 3 3 0 Cricket paralysis virus, VP4 Spore_III_AF PF09581.5 gi|435851476|ref|YP_007313062.1| - 0.31 10.8 6.8 0.2 11.4 3.4 1.7 1 1 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) PPDK_N PF01326.14 gi|435851477|ref|YP_007313063.1| - 8.9e-91 304.3 0.0 1.4e-89 300.3 0.0 2.0 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|435851477|ref|YP_007313063.1| - 3.4e-59 200.1 0.0 5.6e-59 199.4 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|435851477|ref|YP_007313063.1| - 3.7e-24 84.0 0.6 1.1e-23 82.5 0.4 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain DJ-1_PfpI PF01965.19 gi|435851478|ref|YP_007313064.1| - 1.2e-29 102.7 0.3 1.4e-29 102.4 0.2 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|435851478|ref|YP_007313064.1| - 1.2e-13 50.7 0.0 1.3e-13 50.5 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase Gly_transf_sug PF04488.10 gi|435851478|ref|YP_007313064.1| - 0.017 15.5 0.0 0.035 14.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase sugar-binding region containing DXD motif Exonuc_VII_L PF02601.10 gi|435851478|ref|YP_007313064.1| - 0.023 13.8 0.0 0.039 13.1 0.0 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit GATase PF00117.23 gi|435851478|ref|YP_007313064.1| - 0.089 12.2 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Lactamase_B_2 PF12706.2 gi|435851479|ref|YP_007313065.1| - 2.1e-19 69.8 1.8 3e-19 69.3 1.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|435851479|ref|YP_007313065.1| - 1.9e-12 47.2 6.7 2.6e-12 46.8 3.8 1.8 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|435851479|ref|YP_007313065.1| - 0.0039 16.9 0.0 0.0071 16.0 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Tcf25 PF04910.9 gi|435851479|ref|YP_007313065.1| - 0.23 10.3 0.4 0.32 9.9 0.3 1.1 1 0 0 1 1 1 0 Transcriptional repressor TCF25 PDEase_II PF02112.10 gi|435851479|ref|YP_007313065.1| - 0.82 8.5 2.8 1.6 7.5 1.4 1.8 1 1 1 2 2 2 0 cAMP phosphodiesterases class-II N6_Mtase PF02384.11 gi|435851480|ref|YP_007313066.1| - 1.5e-116 388.8 0.0 1.9e-116 388.4 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|435851480|ref|YP_007313066.1| - 5.6e-29 101.3 0.1 1.4e-28 99.9 0.0 1.7 1 0 0 1 1 1 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|435851480|ref|YP_007313066.1| - 1.1e-08 35.1 0.0 2e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|435851480|ref|YP_007313066.1| - 6.8e-06 25.7 0.0 1.3e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|435851480|ref|YP_007313066.1| - 9.9e-05 21.7 0.0 0.00021 20.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|435851480|ref|YP_007313066.1| - 0.012 15.0 0.0 0.093 12.1 0.0 2.1 1 1 0 1 1 1 0 Conserved hypothetical protein 95 DUF1219 PF06755.7 gi|435851481|ref|YP_007313067.1| - 0.11 12.0 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1219) ORF6N PF10543.4 gi|435851482|ref|YP_007313068.1| - 2.7e-25 88.1 3.6 2.6e-22 78.6 0.1 2.5 1 1 1 2 2 2 2 ORF6N domain Methylase_S PF01420.14 gi|435851483|ref|YP_007313069.1| - 1.4e-32 112.9 0.9 5.4e-18 65.5 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DoxX_3 PF13781.1 gi|435851484|ref|YP_007313070.1| - 0.95 9.8 5.1 3.6 7.9 0.6 2.4 2 1 0 2 2 2 0 DoxX-like family CRPA PF05745.6 gi|435851484|ref|YP_007313070.1| - 5.7 6.7 5.7 0.6 9.9 0.2 1.9 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) Lipocalin_5 PF13924.1 gi|435851485|ref|YP_007313071.1| - 0.019 14.6 0.0 0.063 12.9 0.0 1.8 1 1 1 2 2 2 0 Lipocalin-like domain Thioredoxin_6 PF13848.1 gi|435851485|ref|YP_007313071.1| - 0.03 14.1 0.1 0.052 13.3 0.1 1.4 1 0 0 1 1 1 0 Thioredoxin-like domain Virulence_RhuM PF13310.1 gi|435851486|ref|YP_007313072.1| - 3e-119 396.8 9.2 3.7e-119 396.5 6.4 1.1 1 0 0 1 1 1 1 Virulence protein RhuM family Mrr_N PF14338.1 gi|435851486|ref|YP_007313072.1| - 0.0021 18.0 0.7 0.22 11.6 0.1 2.8 2 1 0 2 2 2 1 Mrr N-terminal domain HTH_5 PF01022.15 gi|435851486|ref|YP_007313072.1| - 0.046 13.4 0.0 0.096 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|435851486|ref|YP_007313072.1| - 0.068 12.5 0.0 0.17 11.3 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|435851486|ref|YP_007313072.1| - 0.075 12.5 0.0 0.26 10.8 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_pRha PF09669.5 gi|435851486|ref|YP_007313072.1| - 0.6 10.4 4.8 1.3 9.4 0.1 3.1 2 1 1 3 3 3 0 Phage regulatory protein Rha (Phage_pRha) DUF3387 PF11867.3 gi|435851487|ref|YP_007313073.1| - 5e-132 439.9 17.0 8.2e-132 439.2 11.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) HSDR_N PF04313.9 gi|435851487|ref|YP_007313073.1| - 4.4e-48 163.6 0.1 4.4e-48 163.6 0.0 3.1 3 0 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|435851487|ref|YP_007313073.1| - 7.4e-16 58.5 0.0 6.4e-15 55.4 0.0 2.5 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit Glyco_hydro_44 PF12891.2 gi|435851487|ref|YP_007313073.1| - 0.00011 21.8 0.1 0.00033 20.2 0.0 1.8 2 0 0 2 2 2 1 Glycoside hydrolase family 44 DEAD PF00270.24 gi|435851487|ref|YP_007313073.1| - 0.00038 20.0 0.4 0.0026 17.2 0.0 2.5 3 1 0 3 3 3 1 DEAD/DEAH box helicase PDDEXK_4 PF14281.1 gi|435851487|ref|YP_007313073.1| - 0.0029 17.4 0.0 0.0068 16.2 0.0 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2285 PF10074.4 gi|435851487|ref|YP_007313073.1| - 0.039 14.2 0.5 8.6 6.7 0.0 2.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2285) Thr_synth_N PF14821.1 gi|435851487|ref|YP_007313073.1| - 0.097 12.6 0.0 0.3 11.1 0.0 1.8 1 0 0 1 1 1 0 Threonine synthase N terminus Nitro_FeMo-Co PF02579.12 gi|435851488|ref|YP_007313074.1| - 4.5e-20 71.5 0.4 7e-20 70.9 0.0 1.5 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor Methyltransf_11 PF08241.7 gi|435851490|ref|YP_007313076.1| - 3e-14 53.2 0.0 4.8e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435851490|ref|YP_007313076.1| - 4.6e-12 46.4 0.0 7e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435851490|ref|YP_007313076.1| - 8.9e-11 41.5 0.0 1.2e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435851490|ref|YP_007313076.1| - 4e-10 39.9 0.0 6.7e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|435851490|ref|YP_007313076.1| - 3.5e-08 32.8 0.0 7e-08 31.8 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|435851490|ref|YP_007313076.1| - 1.8e-07 30.6 0.0 3.3e-07 29.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|435851490|ref|YP_007313076.1| - 1.1e-06 29.0 0.0 2.2e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435851490|ref|YP_007313076.1| - 6e-06 26.2 0.0 2.4e-05 24.3 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|435851490|ref|YP_007313076.1| - 6.1e-06 26.0 0.0 1.7e-05 24.6 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_PK PF05891.7 gi|435851490|ref|YP_007313076.1| - 2.4e-05 23.7 0.0 3.7e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Methyltransf_4 PF02390.12 gi|435851490|ref|YP_007313076.1| - 4.6e-05 22.5 0.0 7.8e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|435851490|ref|YP_007313076.1| - 5.4e-05 22.4 0.0 6.5e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|435851490|ref|YP_007313076.1| - 9.7e-05 21.6 0.0 0.00014 21.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|435851490|ref|YP_007313076.1| - 0.00035 19.6 0.0 0.00047 19.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|435851490|ref|YP_007313076.1| - 0.00037 21.2 0.0 0.00071 20.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|435851490|ref|YP_007313076.1| - 0.00064 18.9 0.1 0.0019 17.4 0.0 1.7 2 0 0 2 2 2 1 Tellurite resistance protein TehB PCMT PF01135.14 gi|435851490|ref|YP_007313076.1| - 0.00082 18.9 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.5 gi|435851490|ref|YP_007313076.1| - 0.0021 17.6 0.0 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|435851490|ref|YP_007313076.1| - 0.0056 16.2 0.0 0.0088 15.6 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_16 PF10294.4 gi|435851490|ref|YP_007313076.1| - 0.014 14.8 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase FmrO PF07091.6 gi|435851490|ref|YP_007313076.1| - 0.022 13.7 0.1 0.038 12.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DUF938 PF06080.7 gi|435851490|ref|YP_007313076.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) GidB PF02527.10 gi|435851490|ref|YP_007313076.1| - 0.13 11.3 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Pyridox_oxidase PF01243.15 gi|435851491|ref|YP_007313077.1| - 1.5e-07 31.3 0.0 1.9e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase CpeT PF06206.6 gi|435851491|ref|YP_007313077.1| - 0.06 13.0 0.0 0.073 12.7 0.0 1.1 1 0 0 1 1 1 0 CpeT/CpcT family (DUF1001) DUF2798 PF11391.3 gi|435851492|ref|YP_007313078.1| - 7e-11 41.7 20.4 1.8e-05 24.3 5.6 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2798) Cyt_c_ox_IV PF12270.3 gi|435851492|ref|YP_007313078.1| - 3.1 7.5 8.5 1 9.0 1.2 2.4 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV Multi_Drug_Res PF00893.14 gi|435851493|ref|YP_007313079.1| - 3.5e-30 104.3 7.6 4.1e-30 104.0 5.2 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|435851493|ref|YP_007313079.1| - 0.0096 16.1 12.7 0.012 15.7 5.3 2.0 1 1 1 2 2 2 2 Multidrug resistance efflux transporter CLN6 PF15156.1 gi|435851493|ref|YP_007313079.1| - 0.011 14.8 0.7 0.012 14.7 0.5 1.1 1 0 0 1 1 1 0 Ceroid-lipofuscinosis neuronal protein 6 EamA PF00892.15 gi|435851493|ref|YP_007313079.1| - 0.077 13.0 14.6 0.39 10.7 10.2 2.0 1 1 0 1 1 1 0 EamA-like transporter family Ceramidase PF05875.7 gi|435851493|ref|YP_007313079.1| - 0.11 11.5 0.8 0.14 11.2 0.6 1.1 1 0 0 1 1 1 0 Ceramidase UPF0060 PF02694.10 gi|435851493|ref|YP_007313079.1| - 0.4 10.7 4.5 0.47 10.5 3.1 1.2 1 0 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family DUF4131 PF13567.1 gi|435851493|ref|YP_007313079.1| - 8.6 5.7 7.7 13 5.1 0.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) HTH_24 PF13412.1 gi|435851494|ref|YP_007313080.1| - 0.003 16.8 0.2 0.0076 15.6 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|435851494|ref|YP_007313080.1| - 0.021 14.4 0.1 0.052 13.1 0.1 1.6 1 0 0 1 1 1 0 HTH domain Caudo_TAP PF02413.12 gi|435851494|ref|YP_007313080.1| - 0.026 14.6 0.3 0.032 14.4 0.2 1.3 1 0 0 1 1 1 0 Caudovirales tail fibre assembly protein DUF3723 PF12520.3 gi|435851494|ref|YP_007313080.1| - 0.032 12.7 0.1 0.034 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3723) DUF3782 PF12644.2 gi|435851494|ref|YP_007313080.1| - 0.066 13.0 0.4 0.093 12.5 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) EHN PF06441.7 gi|435851494|ref|YP_007313080.1| - 0.11 12.4 0.3 0.2 11.5 0.2 1.4 1 0 0 1 1 1 0 Epoxide hydrolase N terminus Phage_int_SAM_4 PF13495.1 gi|435851494|ref|YP_007313080.1| - 0.27 11.5 3.5 2 8.8 0.3 2.8 2 1 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Med28 PF11594.3 gi|435851494|ref|YP_007313080.1| - 0.6 10.3 3.7 0.69 10.1 1.0 2.0 1 1 1 2 2 2 0 Mediator complex subunit 28 SIMPL PF04402.9 gi|435851495|ref|YP_007313081.1| - 3.7e-50 170.7 12.4 4.3e-50 170.4 8.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Amidase PF01425.16 gi|435851495|ref|YP_007313081.1| - 0.0014 17.5 0.9 0.0015 17.4 0.6 1.1 1 0 0 1 1 1 1 Amidase Peptidase_M18 PF02127.10 gi|435851497|ref|YP_007313083.1| - 2.6e-121 405.1 0.0 2.9e-121 404.9 0.0 1.0 1 0 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) DUF1724 PF08350.5 gi|435851498|ref|YP_007313084.1| - 1.8e-17 62.5 1.4 2.6e-17 62.1 0.3 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|435851498|ref|YP_007313084.1| - 0.047 13.4 0.5 0.099 12.4 0.4 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain VCBS PF13517.1 gi|435851499|ref|YP_007313085.1| - 9e-05 22.7 47.0 0.011 16.0 7.2 5.7 1 1 5 6 6 6 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|435851499|ref|YP_007313085.1| - 0.0052 16.4 24.4 0.39 10.4 0.4 4.8 4 0 0 4 4 4 3 FG-GAP repeat PetN PF03742.9 gi|435851499|ref|YP_007313085.1| - 5.9 6.5 11.1 55 3.4 0.1 5.0 5 0 0 5 5 5 0 PetN AMP-binding PF00501.23 gi|435851500|ref|YP_007313086.1| - 6.5e-83 278.4 0.0 7.6e-83 278.2 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|435851500|ref|YP_007313086.1| - 2.8e-17 63.4 0.1 7.3e-17 62.0 0.0 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain HTH_17 PF12728.2 gi|435851500|ref|YP_007313086.1| - 3.5e-08 33.5 0.0 1.3e-07 31.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Acetyltransf_9 PF13527.1 gi|435851501|ref|YP_007313087.1| - 2.5e-13 49.9 0.0 3.4e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|435851501|ref|YP_007313087.1| - 1.9e-11 43.8 0.0 4.2e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|435851501|ref|YP_007313087.1| - 3.9e-08 33.3 0.0 6.5e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|435851501|ref|YP_007313087.1| - 0.0029 17.7 0.0 0.0047 17.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|435851501|ref|YP_007313087.1| - 0.01 15.7 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase MOZ_SAS PF01853.13 gi|435851501|ref|YP_007313087.1| - 0.013 14.7 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 MOZ/SAS family DUF2140 PF09911.4 gi|435851502|ref|YP_007313088.1| - 0.12 11.5 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2140) DUF4405 PF14358.1 gi|435851503|ref|YP_007313089.1| - 1.2e-15 57.3 4.2 1.4e-15 57.1 2.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.15 gi|435851503|ref|YP_007313089.1| - 7.2e-06 25.5 0.6 7.9e-06 25.3 0.4 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Cytochrom_B_N PF00033.14 gi|435851503|ref|YP_007313089.1| - 0.00045 19.6 0.9 0.0006 19.2 0.6 1.2 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB CopD PF05425.8 gi|435851503|ref|YP_007313089.1| - 0.024 14.8 0.6 0.033 14.3 0.4 1.2 1 0 0 1 1 1 0 Copper resistance protein D EpsG PF14897.1 gi|435851503|ref|YP_007313089.1| - 0.045 12.6 1.6 0.054 12.4 1.1 1.1 1 0 0 1 1 1 0 EpsG family PepSY_TM_3 PF13706.1 gi|435851503|ref|YP_007313089.1| - 0.11 11.9 2.1 0.27 10.6 1.5 1.7 1 0 0 1 1 1 0 PepSY-associated TM helix DUF2516 PF10724.4 gi|435851503|ref|YP_007313089.1| - 0.26 11.2 2.5 0.4 10.7 1.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2516) PepSY_TM_2 PF13703.1 gi|435851503|ref|YP_007313089.1| - 2.8 8.1 8.0 7.5 6.7 0.3 2.0 1 1 0 2 2 2 0 PepSY-associated TM helix PsbN PF02468.10 gi|435851503|ref|YP_007313089.1| - 4.4 6.9 5.9 0.59 9.7 1.2 1.7 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) Erythro_esteras PF05139.9 gi|435851504|ref|YP_007313090.1| - 6.9e-52 176.7 0.0 8e-52 176.5 0.0 1.1 1 0 0 1 1 1 1 Erythromycin esterase DUF399 PF04187.8 gi|435851504|ref|YP_007313090.1| - 0.0021 17.6 0.2 0.029 13.8 0.2 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF399 3-dmu-9_3-mt PF06983.8 gi|435851505|ref|YP_007313091.1| - 1.3e-06 28.6 0.0 1.5e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 3-demethylubiquinone-9 3-methyltransferase Glyoxalase PF00903.20 gi|435851505|ref|YP_007313091.1| - 0.0036 17.2 0.0 0.0039 17.1 0.0 1.2 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ala_racemase_N PF01168.15 gi|435851506|ref|YP_007313092.1| - 3.3e-40 137.9 0.0 3.9e-40 137.7 0.0 1.0 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Orn_Arg_deC_N PF02784.11 gi|435851506|ref|YP_007313092.1| - 0.00099 18.3 0.1 0.0013 18.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Peptidase_U32 PF01136.14 gi|435851507|ref|YP_007313093.1| - 2.6e-90 301.4 0.1 1.4e-71 240.0 0.0 2.7 2 1 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|435851507|ref|YP_007313093.1| - 2.3e-29 101.9 0.0 5.2e-29 100.7 0.0 1.7 1 0 0 1 1 1 1 Collagenase TF_Zn_Ribbon PF08271.7 gi|435851508|ref|YP_007313094.1| - 0.00034 19.8 0.5 0.00046 19.4 0.3 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|435851508|ref|YP_007313094.1| - 0.00036 19.6 0.5 0.00053 19.1 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|435851508|ref|YP_007313094.1| - 0.002 17.8 0.6 0.0023 17.6 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Cys_rich_CPCC PF14206.1 gi|435851508|ref|YP_007313094.1| - 0.0027 17.2 0.4 0.0027 17.2 0.3 1.0 1 0 0 1 1 1 1 Cysteine-rich CPCC RecR PF02132.10 gi|435851508|ref|YP_007313094.1| - 0.0057 16.0 1.0 0.41 10.1 0.0 2.1 1 1 1 2 2 2 1 RecR protein FYVE PF01363.16 gi|435851508|ref|YP_007313094.1| - 0.0091 15.8 0.8 0.01 15.7 0.6 1.1 1 0 0 1 1 1 1 FYVE zinc finger FYDLN_acid PF09538.5 gi|435851508|ref|YP_007313094.1| - 0.012 16.2 0.2 0.012 16.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zinc-ribbons_6 PF07191.7 gi|435851508|ref|YP_007313094.1| - 0.024 14.4 0.6 0.026 14.2 0.4 1.1 1 0 0 1 1 1 0 zinc-ribbons Rubredoxin PF00301.15 gi|435851508|ref|YP_007313094.1| - 0.046 13.5 2.3 1.8 8.5 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin zf-H2C2_2 PF13465.1 gi|435851508|ref|YP_007313094.1| - 0.056 13.7 2.2 6.2 7.2 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-RING_3 PF14369.1 gi|435851508|ref|YP_007313094.1| - 0.059 13.3 0.1 0.059 13.3 0.1 1.5 2 0 0 2 2 1 0 zinc-finger zf-HIT PF04438.11 gi|435851508|ref|YP_007313094.1| - 0.071 12.7 2.9 1.3 8.7 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger A2L_zn_ribbon PF08792.5 gi|435851508|ref|YP_007313094.1| - 0.076 12.4 1.0 0.12 11.8 0.7 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain RPA_interact_C PF14768.1 gi|435851508|ref|YP_007313094.1| - 0.1 12.9 0.4 0.11 12.9 0.3 1.1 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DUF35_N PF12172.3 gi|435851508|ref|YP_007313094.1| - 0.11 12.4 0.7 12 5.9 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.4 gi|435851508|ref|YP_007313094.1| - 0.21 11.2 8.0 1.1 9.0 5.5 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|435851508|ref|YP_007313094.1| - 0.25 11.1 2.9 0.38 10.5 2.0 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.6 gi|435851508|ref|YP_007313094.1| - 0.27 10.9 2.0 0.41 10.3 1.4 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain PADR1 PF08063.7 gi|435851508|ref|YP_007313094.1| - 0.29 10.5 3.0 0.4 10.1 1.4 1.9 1 1 1 2 2 2 0 PADR1 (NUC008) domain Ogr_Delta PF04606.7 gi|435851508|ref|YP_007313094.1| - 0.36 10.5 1.7 2.3 7.9 0.3 2.0 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_2 PF13240.1 gi|435851508|ref|YP_007313094.1| - 0.5 9.9 4.7 8.8 5.9 3.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|435851508|ref|YP_007313094.1| - 0.5 9.8 2.7 2.2 7.8 1.9 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-Dof PF02701.10 gi|435851508|ref|YP_007313094.1| - 0.58 10.1 3.0 1.5 8.7 2.1 1.7 1 1 0 1 1 1 0 Dof domain, zinc finger Zn-ribbon_8 PF09723.5 gi|435851508|ref|YP_007313094.1| - 1.5 8.8 4.6 1.4 8.9 0.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|435851508|ref|YP_007313094.1| - 1.7 8.2 5.2 8.8 6.0 3.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|435851508|ref|YP_007313094.1| - 2 8.1 5.5 0.54 9.9 0.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Response_reg PF00072.19 gi|435851509|ref|YP_007313095.1| - 5.9e-27 93.9 0.2 6.5e-27 93.7 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF1638 PF07796.6 gi|435851510|ref|YP_007313096.1| - 2e-41 141.3 0.1 2.9e-41 140.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) TrmB PF01978.14 gi|435851511|ref|YP_007313097.1| - 1.6e-20 72.5 0.0 4.2e-20 71.2 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|435851511|ref|YP_007313097.1| - 0.012 15.5 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Syntaxin-6_N PF09177.6 gi|435851511|ref|YP_007313097.1| - 0.035 14.5 0.1 0.093 13.1 0.1 1.9 1 0 0 1 1 1 0 Syntaxin 6, N-terminal DUF4393 PF14337.1 gi|435851511|ref|YP_007313097.1| - 0.035 13.5 0.1 0.072 12.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) FlpD PF02662.11 gi|435851511|ref|YP_007313097.1| - 0.075 12.7 0.2 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit PadR PF03551.9 gi|435851511|ref|YP_007313097.1| - 0.1 12.3 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family EF1G PF00647.14 gi|435851511|ref|YP_007313097.1| - 0.3 10.7 3.2 0.23 11.1 0.6 2.0 2 0 0 2 2 2 0 Elongation factor 1 gamma, conserved domain CARDB PF07705.6 gi|435851512|ref|YP_007313098.1| - 7.5e-13 48.4 2.7 0.0019 18.2 0.0 3.5 3 0 0 3 3 3 3 CARDB NPCBM_assoc PF10633.4 gi|435851512|ref|YP_007313098.1| - 5.2e-06 26.4 0.0 0.0059 16.6 0.0 3.4 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|435851512|ref|YP_007313098.1| - 0.00083 19.3 4.3 1.1 9.2 0.2 3.3 3 0 0 3 3 3 2 Domain of unknown function DUF11 DUF2393 PF09624.5 gi|435851512|ref|YP_007313098.1| - 4 6.9 16.2 3.3 7.2 0.4 4.0 2 2 1 3 3 3 0 Protein of unknown function (DUF2393) MacB_PCD PF12704.2 gi|435851513|ref|YP_007313099.1| - 3.7e-17 62.6 0.4 6e-17 62.0 0.3 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|435851513|ref|YP_007313099.1| - 9.4e-14 51.2 11.9 9.4e-14 51.2 8.2 2.1 2 0 0 2 2 2 1 FtsX-like permease family ABC_tran PF00005.22 gi|435851514|ref|YP_007313100.1| - 6.9e-36 123.5 0.0 9e-36 123.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435851514|ref|YP_007313100.1| - 8.8e-10 39.0 0.1 2.8e-08 34.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|435851514|ref|YP_007313100.1| - 2.1e-08 33.6 0.5 6.9e-08 31.9 0.3 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|435851514|ref|YP_007313100.1| - 2.2e-05 24.6 0.2 8.1e-05 22.7 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|435851514|ref|YP_007313100.1| - 7.5e-05 22.1 0.0 0.00015 21.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|435851514|ref|YP_007313100.1| - 0.0001 21.5 2.3 0.0091 15.0 0.7 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|435851514|ref|YP_007313100.1| - 0.00012 21.5 0.0 0.0056 16.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|435851514|ref|YP_007313100.1| - 0.0002 21.3 0.0 0.00036 20.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|435851514|ref|YP_007313100.1| - 0.00029 20.0 0.1 0.00054 19.1 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|435851514|ref|YP_007313100.1| - 0.0008 19.8 0.0 0.0018 18.7 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein G-alpha PF00503.15 gi|435851514|ref|YP_007313100.1| - 0.0013 17.4 0.0 0.0015 17.2 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit DUF87 PF01935.12 gi|435851514|ref|YP_007313100.1| - 0.0019 18.0 1.0 0.43 10.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF87 SbcCD_C PF13558.1 gi|435851514|ref|YP_007313100.1| - 0.002 17.9 0.2 0.019 14.8 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|435851514|ref|YP_007313100.1| - 0.0061 16.8 2.4 0.085 13.1 1.7 2.3 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|435851514|ref|YP_007313100.1| - 0.011 15.3 0.8 0.36 10.3 0.1 2.7 2 1 1 3 3 3 0 AAA domain MMR_HSR1 PF01926.18 gi|435851514|ref|YP_007313100.1| - 0.012 15.5 1.1 0.054 13.4 0.8 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|435851514|ref|YP_007313100.1| - 0.014 15.3 0.2 0.035 13.9 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|435851514|ref|YP_007313100.1| - 0.02 15.7 1.2 0.048 14.4 0.8 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|435851514|ref|YP_007313100.1| - 0.021 14.5 0.1 0.044 13.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain KaiC PF06745.8 gi|435851514|ref|YP_007313100.1| - 0.021 13.9 0.3 0.88 8.6 0.1 2.3 2 1 0 2 2 2 0 KaiC FtsK_SpoIIIE PF01580.13 gi|435851514|ref|YP_007313100.1| - 0.034 13.6 0.1 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family NB-ARC PF00931.17 gi|435851514|ref|YP_007313100.1| - 0.038 12.8 0.2 0.12 11.1 0.0 1.8 2 1 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.1 gi|435851514|ref|YP_007313100.1| - 0.04 14.2 1.7 0.1 12.9 1.0 2.0 1 1 1 2 2 2 0 AAA domain MobB PF03205.9 gi|435851514|ref|YP_007313100.1| - 0.1 12.3 0.1 0.25 11.0 0.1 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|435851514|ref|YP_007313100.1| - 0.11 11.9 1.9 0.21 10.9 1.2 1.8 1 1 0 1 1 1 0 AAA-like domain DUF427 PF04248.7 gi|435851515|ref|YP_007313101.1| - 2.3e-13 49.5 0.1 2.7e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF427) DDE_Tnp_1 PF01609.16 gi|435851516|ref|YP_007313102.1| - 0.00015 21.3 0.4 0.00022 20.8 0.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain HTH_29 PF13551.1 gi|435851517|ref|YP_007313103.1| - 2e-12 47.2 0.0 3.4e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|435851517|ref|YP_007313103.1| - 3.6e-08 34.0 0.0 7.5e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|435851517|ref|YP_007313103.1| - 6.1e-08 32.5 0.0 1.4e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|435851517|ref|YP_007313103.1| - 1.3e-07 31.0 0.3 9.5e-07 28.2 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain LZ_Tnp_IS481 PF13011.1 gi|435851517|ref|YP_007313103.1| - 0.0017 18.6 0.0 0.0038 17.5 0.0 1.6 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 PvlArgDC PF01862.11 gi|435851520|ref|YP_007313106.1| - 5.2e-65 218.0 0.2 5.8e-65 217.9 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DICT PF10069.4 gi|435851520|ref|YP_007313106.1| - 0.011 15.3 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Sensory domain found in DIguanylate Cyclases & Two-component systems DUF898 PF05987.8 gi|435851520|ref|YP_007313106.1| - 0.062 12.1 0.0 0.069 12.0 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) FrhB_FdhB_C PF04432.8 gi|435851521|ref|YP_007313107.1| - 5.6e-38 129.8 1.7 7.8e-38 129.4 0.0 1.9 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|435851521|ref|YP_007313107.1| - 4e-26 90.6 0.1 7.4e-26 89.8 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.1 gi|435851521|ref|YP_007313107.1| - 0.00013 21.7 10.8 0.00013 21.7 7.5 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435851521|ref|YP_007313107.1| - 0.00014 22.1 9.5 0.02 15.2 0.6 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435851521|ref|YP_007313107.1| - 0.00023 21.1 14.2 0.011 15.7 9.3 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435851521|ref|YP_007313107.1| - 0.00047 19.6 20.1 0.0052 16.3 2.2 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435851521|ref|YP_007313107.1| - 0.0014 18.8 19.1 0.014 15.6 1.5 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435851521|ref|YP_007313107.1| - 0.0019 17.9 11.8 0.23 11.3 0.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435851521|ref|YP_007313107.1| - 0.0062 16.7 15.8 0.78 10.0 1.3 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435851521|ref|YP_007313107.1| - 0.0088 16.4 15.3 0.1 12.9 0.7 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain DUF2615 PF11027.3 gi|435851521|ref|YP_007313107.1| - 0.014 15.2 0.3 0.064 13.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2615) Fer4_15 PF13459.1 gi|435851521|ref|YP_007313107.1| - 0.018 15.6 7.6 0.78 10.3 0.5 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|435851521|ref|YP_007313107.1| - 0.026 15.2 11.5 0.93 10.2 0.4 3.3 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|435851521|ref|YP_007313107.1| - 0.064 13.6 13.4 0.45 10.9 1.8 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851521|ref|YP_007313107.1| - 0.19 11.6 18.1 0.22 11.5 1.0 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435851521|ref|YP_007313107.1| - 0.87 9.4 16.2 0.26 11.1 8.7 2.1 2 1 0 2 2 1 0 4Fe-4S dicluster domain E1-E2_ATPase PF00122.15 gi|435851522|ref|YP_007313108.1| - 2.4e-54 183.8 5.5 2.4e-54 183.8 3.8 2.5 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|435851522|ref|YP_007313108.1| - 1.5e-17 64.7 0.0 3e-17 63.7 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|435851522|ref|YP_007313108.1| - 3.7e-15 55.1 0.1 3.7e-15 55.1 0.1 2.4 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Cation_ATPase_C PF00689.16 gi|435851522|ref|YP_007313108.1| - 2.4e-14 53.2 11.3 2.4e-14 53.2 7.8 2.1 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus HAD PF12710.2 gi|435851522|ref|YP_007313108.1| - 8.6e-09 35.8 0.1 3.6e-08 33.7 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Alpha-amylase PF00128.19 gi|435851523|ref|YP_007313109.1| - 3.9e-37 128.3 10.2 9.1e-37 127.1 7.0 1.5 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Glyco_hydro_70 PF02324.11 gi|435851523|ref|YP_007313109.1| - 5.8e-14 50.8 10.0 5.2e-08 31.1 0.1 3.1 2 1 1 3 3 3 3 Glycosyl hydrolase family 70 DUF1939 PF09154.5 gi|435851523|ref|YP_007313109.1| - 0.022 14.6 0.8 0.088 12.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1939) adh_short PF00106.20 gi|435851524|ref|YP_007313110.1| - 6.7e-32 110.7 0.1 8e-32 110.4 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|435851524|ref|YP_007313110.1| - 4.8e-27 95.2 0.0 6e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|435851524|ref|YP_007313110.1| - 5.7e-15 55.4 0.1 8e-15 54.9 0.1 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|435851524|ref|YP_007313110.1| - 0.00012 22.1 0.0 0.00019 21.4 0.0 1.3 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|435851524|ref|YP_007313110.1| - 0.00044 19.7 0.1 0.00092 18.7 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.15 gi|435851524|ref|YP_007313110.1| - 0.048 13.7 0.6 0.097 12.7 0.4 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Glyco_transf_4 PF13439.1 gi|435851524|ref|YP_007313110.1| - 0.052 13.2 0.0 4.6 6.9 0.0 2.3 2 1 0 2 2 2 0 Glycosyltransferase Family 4 DUF285 PF03382.9 gi|435851524|ref|YP_007313110.1| - 0.074 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Mycoplasma protein of unknown function, DUF285 THF_DHG_CYH_C PF02882.14 gi|435851524|ref|YP_007313110.1| - 0.087 11.9 0.2 0.26 10.3 0.0 1.8 3 0 0 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3Beta_HSD PF01073.14 gi|435851524|ref|YP_007313110.1| - 0.091 11.4 0.1 0.11 11.1 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Spore_IV_A PF09547.5 gi|435851524|ref|YP_007313110.1| - 0.095 11.3 0.1 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) N6_Mtase PF02384.11 gi|435851525|ref|YP_007313111.1| - 2.9e-100 335.3 0.0 4.4e-100 334.7 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|435851525|ref|YP_007313111.1| - 7.5e-15 55.5 2.7 3.7e-13 50.0 0.0 4.3 3 1 1 4 4 4 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|435851525|ref|YP_007313111.1| - 9.1e-09 35.3 0.0 2.5e-08 33.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|435851525|ref|YP_007313111.1| - 7.5e-06 25.6 0.0 1.6e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|435851525|ref|YP_007313111.1| - 0.00097 18.5 0.0 0.0019 17.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Eco57I PF07669.6 gi|435851525|ref|YP_007313111.1| - 0.0012 19.2 0.0 0.0049 17.2 0.0 2.1 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.1 gi|435851525|ref|YP_007313111.1| - 0.075 12.6 0.0 0.19 11.2 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Methylase_S PF01420.14 gi|435851526|ref|YP_007313112.1| - 5.1e-49 166.4 1.1 5.9e-26 91.4 0.2 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain SANTA PF09133.5 gi|435851526|ref|YP_007313112.1| - 0.094 12.6 0.1 6.1 6.8 0.0 2.7 2 0 0 2 2 2 0 SANTA (SANT Associated) HATPase_c_4 PF13749.1 gi|435851527|ref|YP_007313113.1| - 2.1e-21 75.5 0.0 4.9e-21 74.3 0.0 1.7 2 0 0 2 2 2 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|435851527|ref|YP_007313113.1| - 3.9e-13 49.6 0.1 6.5e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Divergent AAA domain HTH_24 PF13412.1 gi|435851527|ref|YP_007313113.1| - 2.2e-09 36.5 0.1 3.8e-09 35.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Mga PF08280.6 gi|435851527|ref|YP_007313113.1| - 0.00025 20.7 0.0 0.00045 19.9 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.1 gi|435851527|ref|YP_007313113.1| - 0.003 17.2 0.0 0.0063 16.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|435851527|ref|YP_007313113.1| - 0.0031 17.1 0.0 0.0078 15.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|435851527|ref|YP_007313113.1| - 0.005 16.4 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|435851527|ref|YP_007313113.1| - 0.027 14.2 0.1 0.056 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|435851527|ref|YP_007313113.1| - 0.037 13.6 0.9 0.061 13.0 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|435851527|ref|YP_007313113.1| - 0.048 13.2 0.0 0.093 12.2 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Crp PF00325.15 gi|435851527|ref|YP_007313113.1| - 0.11 11.9 0.1 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HSDR_N PF04313.9 gi|435851528|ref|YP_007313114.1| - 6.5e-33 114.1 0.3 2.1e-32 112.4 0.2 1.9 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|435851528|ref|YP_007313114.1| - 1.1e-12 48.2 0.1 2.8e-11 43.5 0.0 2.9 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|435851528|ref|YP_007313114.1| - 0.0065 16.6 0.0 0.15 12.1 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|435851528|ref|YP_007313114.1| - 0.0074 15.7 0.4 2.6 7.3 0.2 3.1 3 0 0 3 3 3 1 AAA-like domain VRR_NUC PF08774.6 gi|435851528|ref|YP_007313114.1| - 0.03 14.3 0.0 0.1 12.6 0.0 1.9 1 0 0 1 1 1 0 VRR-NUC domain DEAD PF00270.24 gi|435851528|ref|YP_007313114.1| - 0.039 13.4 0.0 0.11 12.0 0.0 1.7 1 0 0 1 1 1 0 DEAD/DEAH box helicase DUF45 PF01863.12 gi|435851529|ref|YP_007313115.1| - 2.4e-59 200.6 1.4 2.7e-59 200.4 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 SprT-like PF10263.4 gi|435851529|ref|YP_007313115.1| - 1.7e-07 31.0 0.0 2.5e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 SprT-like family WLM PF08325.5 gi|435851529|ref|YP_007313115.1| - 0.0036 17.1 0.6 0.0054 16.6 0.4 1.4 1 1 0 1 1 1 1 WLM domain DUF1937 PF09152.5 gi|435851529|ref|YP_007313115.1| - 0.034 14.6 0.1 0.062 13.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1937) CsbD PF05532.7 gi|435851530|ref|YP_007313116.1| - 6.2e-17 61.0 6.6 6.9e-17 60.8 4.6 1.1 1 0 0 1 1 1 1 CsbD-like ISG65-75 PF11727.3 gi|435851530|ref|YP_007313116.1| - 0.073 12.1 1.4 0.074 12.1 1.0 1.0 1 0 0 1 1 1 0 Invariant surface glycoprotein MT0933_antitox PF14013.1 gi|435851530|ref|YP_007313116.1| - 0.45 10.6 3.7 8.6 6.5 0.2 2.2 2 0 0 2 2 2 0 MT0933-like antitoxin protein Virul_fac_BrkB PF03631.10 gi|435851531|ref|YP_007313117.1| - 1.3e-45 155.8 22.6 1.4e-45 155.7 15.6 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF919 PF06034.6 gi|435851532|ref|YP_007313118.1| - 0.055 13.1 3.6 0.11 12.0 2.5 1.6 1 1 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) APC2 PF08672.6 gi|435851532|ref|YP_007313118.1| - 0.14 12.4 1.0 1.3 9.3 0.0 2.4 2 1 0 2 2 2 0 Anaphase promoting complex (APC) subunit 2 DUF2680 PF10925.3 gi|435851532|ref|YP_007313118.1| - 0.19 11.6 5.4 0.76 9.6 0.1 3.2 2 2 1 3 3 3 0 Protein of unknown function (DUF2680) FlaC_arch PF05377.6 gi|435851532|ref|YP_007313118.1| - 0.66 9.9 5.6 6.2 6.7 0.1 2.6 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) SlyX PF04102.7 gi|435851532|ref|YP_007313118.1| - 2.6 8.4 5.2 3.6 8.0 1.8 2.3 1 1 1 2 2 2 0 SlyX DUF2989 PF11207.3 gi|435851533|ref|YP_007313119.1| - 0.024 14.0 1.2 0.75 9.2 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2989) NYN PF01936.13 gi|435851534|ref|YP_007313120.1| - 7e-35 120.4 0.2 8.6e-35 120.1 0.1 1.0 1 0 0 1 1 1 1 NYN domain TPP_enzyme_C PF02775.16 gi|435851534|ref|YP_007313120.1| - 0.082 12.4 0.3 0.88 9.1 0.1 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NAPRTase PF04095.11 gi|435851535|ref|YP_007313121.1| - 4.6e-57 193.1 0.0 5.8e-57 192.7 0.0 1.1 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family FeoA PF04023.9 gi|435851536|ref|YP_007313122.1| - 5.4e-15 55.1 0.0 6e-15 54.9 0.0 1.0 1 0 0 1 1 1 1 FeoA domain Thioredox_DsbH PF03190.10 gi|435851537|ref|YP_007313123.1| - 1.9e-75 252.0 0.0 6.6e-75 250.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|435851537|ref|YP_007313123.1| - 1.5e-12 47.3 0.0 4.3e-12 45.8 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|435851537|ref|YP_007313123.1| - 7.8e-05 22.8 0.0 0.00019 21.6 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_9 PF00759.14 gi|435851537|ref|YP_007313123.1| - 0.00022 20.2 0.1 0.0014 17.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase family 9 Glyco_hydro_88 PF07470.8 gi|435851537|ref|YP_007313123.1| - 0.00027 20.1 0.5 0.064 12.2 0.0 2.2 2 0 0 2 2 2 2 Glycosyl Hydrolase Family 88 GlcNAc_2-epim PF07221.6 gi|435851537|ref|YP_007313123.1| - 0.0016 17.4 1.2 1.2 8.0 0.0 3.1 2 1 1 3 3 3 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) DUF1680 PF07944.7 gi|435851537|ref|YP_007313123.1| - 0.0071 14.6 0.5 0.45 8.7 0.0 2.6 2 1 0 2 2 2 1 Putative glycosyl hydrolase of unknown function (DUF1680) Glyco_hydro_76 PF03663.9 gi|435851537|ref|YP_007313123.1| - 0.027 13.8 0.0 1.1 8.6 0.0 2.8 2 1 1 3 3 3 0 Glycosyl hydrolase family 76 Lon_2 PF13337.1 gi|435851538|ref|YP_007313124.1| - 3.9e-216 717.7 0.4 4.7e-216 717.5 0.2 1.1 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease Lon_C PF05362.8 gi|435851538|ref|YP_007313124.1| - 8.7e-11 41.5 0.0 1.8e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|435851538|ref|YP_007313124.1| - 0.079 12.4 0.1 0.22 11.0 0.0 1.9 2 0 0 2 2 2 0 Subunit ChlI of Mg-chelatase MUG2_C PF08593.5 gi|435851538|ref|YP_007313124.1| - 0.2 11.9 4.3 6.6 7.0 0.3 3.2 3 0 0 3 3 3 0 Meiotically up-regulated glycoproteins C-terminal PglZ PF08665.7 gi|435851539|ref|YP_007313125.1| - 2.7e-54 183.5 0.3 2.7e-54 183.5 0.2 2.1 3 0 0 3 3 3 1 PglZ domain RVT_3 PF13456.1 gi|435851539|ref|YP_007313125.1| - 0.045 13.5 0.1 1.1 9.1 0.0 3.0 3 0 0 3 3 3 0 Reverse transcriptase-like RloB PF13707.1 gi|435851540|ref|YP_007313126.1| - 9.3e-36 123.1 0.0 1.1e-35 122.9 0.0 1.0 1 0 0 1 1 1 1 RloB-like protein AAA_21 PF13304.1 gi|435851541|ref|YP_007313127.1| - 3.5e-45 155.2 12.2 5e-45 154.6 8.5 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|435851541|ref|YP_007313127.1| - 1.4e-07 30.9 16.6 0.22 10.5 11.5 2.7 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|435851541|ref|YP_007313127.1| - 1e-05 24.8 2.0 0.0013 17.9 1.4 2.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|435851541|ref|YP_007313127.1| - 0.005 17.1 5.4 0.005 17.1 3.8 2.2 1 1 1 2 2 2 1 AAA domain DUF3467 PF11950.3 gi|435851543|ref|YP_007313129.1| - 6.7e-08 32.4 0.2 7.6e-08 32.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) BssS PF13991.1 gi|435851543|ref|YP_007313129.1| - 0.087 12.5 0.1 0.16 11.7 0.0 1.5 2 0 0 2 2 2 0 BssS protein family HTH_Crp_2 PF13545.1 gi|435851544|ref|YP_007313130.1| - 9e-05 22.1 0.0 0.00015 21.4 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|435851544|ref|YP_007313130.1| - 0.00013 21.5 0.1 0.00025 20.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|435851544|ref|YP_007313130.1| - 0.0056 16.0 0.1 0.015 14.7 0.1 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|435851544|ref|YP_007313130.1| - 0.013 15.1 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|435851544|ref|YP_007313130.1| - 0.023 14.3 0.1 0.042 13.4 0.0 1.5 1 0 0 1 1 1 0 HTH domain Phage_rep_O PF04492.8 gi|435851544|ref|YP_007313130.1| - 0.057 13.6 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage replication protein O DUF1323 PF07037.6 gi|435851544|ref|YP_007313130.1| - 0.079 13.1 0.0 0.21 11.7 0.0 1.6 1 1 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_23 PF13384.1 gi|435851544|ref|YP_007313130.1| - 0.086 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|435851544|ref|YP_007313130.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HATPase_c_4 PF13749.1 gi|435851548|ref|YP_007313134.1| - 1.3e-26 92.2 0.1 4.2e-26 90.5 0.1 1.9 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|435851548|ref|YP_007313134.1| - 2.1e-24 85.9 0.0 5.3e-24 84.7 0.0 1.7 2 0 0 2 2 2 1 Divergent AAA domain HATPase_c_2 PF13581.1 gi|435851548|ref|YP_007313134.1| - 0.0044 16.8 0.0 0.0094 15.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF4106 PF13388.1 gi|435851548|ref|YP_007313134.1| - 0.0076 15.2 2.1 0.012 14.6 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4106) HTH_45 PF14947.1 gi|435851548|ref|YP_007313134.1| - 0.071 12.9 0.1 0.29 10.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix PT PF04886.7 gi|435851548|ref|YP_007313134.1| - 2.8 7.3 39.0 5.1 6.5 27.0 1.4 1 0 0 1 1 1 0 PT repeat Methyltransf_26 PF13659.1 gi|435851549|ref|YP_007313135.1| - 7.7e-18 64.6 0.0 1.7e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|435851549|ref|YP_007313135.1| - 3.7e-13 49.2 0.0 9.1e-07 28.2 0.0 2.4 2 0 0 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.6 gi|435851549|ref|YP_007313135.1| - 7e-10 39.2 0.0 2.3e-09 37.5 0.0 1.9 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|435851549|ref|YP_007313135.1| - 0.0029 17.1 0.1 1.7 8.1 0.0 2.8 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 DUF4144 PF13642.1 gi|435851550|ref|YP_007313136.1| - 0.041 14.2 2.1 1 9.7 0.1 2.8 2 0 0 2 2 2 0 protein structure with unknown function Hormone_3 PF00159.13 gi|435851550|ref|YP_007313136.1| - 0.078 12.9 0.5 0.23 11.4 0.1 2.0 2 0 0 2 2 2 0 Pancreatic hormone peptide DUF1788 PF08747.6 gi|435851551|ref|YP_007313137.1| - 7.3e-43 145.4 0.3 1.2e-42 144.7 0.1 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1788) 3-dmu-9_3-mt PF06983.8 gi|435851553|ref|YP_007313139.1| - 6.6e-76 252.1 0.5 1.4e-37 128.5 0.1 2.1 2 0 0 2 2 2 2 3-demethylubiquinone-9 3-methyltransferase Glyoxalase_2 PF12681.2 gi|435851553|ref|YP_007313139.1| - 0.0027 18.2 0.0 0.0076 16.8 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|435851553|ref|YP_007313139.1| - 0.004 17.1 0.0 0.028 14.4 0.0 2.3 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VKG_Carbox PF05090.9 gi|435851553|ref|YP_007313139.1| - 0.064 12.1 0.3 0.19 10.5 0.0 1.7 2 0 0 2 2 2 0 Vitamin K-dependent gamma-carboxylase TPR_11 PF13414.1 gi|435851554|ref|YP_007313140.1| - 3e-48 161.3 26.2 1.1e-18 66.6 4.0 2.8 1 1 2 3 3 3 3 TPR repeat TPR_1 PF00515.23 gi|435851554|ref|YP_007313140.1| - 7.8e-40 132.8 16.2 4.4e-11 41.8 0.9 4.2 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|435851554|ref|YP_007313140.1| - 1.8e-32 108.6 13.3 3.3e-08 32.8 0.3 4.3 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435851554|ref|YP_007313140.1| - 2e-23 80.5 13.1 1.4e-07 31.1 0.7 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435851554|ref|YP_007313140.1| - 4.3e-22 76.1 15.2 1.4e-06 27.6 0.8 4.4 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435851554|ref|YP_007313140.1| - 1e-20 73.8 13.3 5.4e-09 36.4 1.5 2.8 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|435851554|ref|YP_007313140.1| - 1.8e-20 72.6 7.7 1.9e-11 43.7 1.2 2.8 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435851554|ref|YP_007313140.1| - 5.7e-17 61.8 21.6 2.4e-07 30.9 1.7 3.0 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435851554|ref|YP_007313140.1| - 6.7e-15 54.2 6.2 1.9e-05 24.8 0.4 4.1 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|435851554|ref|YP_007313140.1| - 5e-14 51.9 3.1 1.5e-05 24.7 0.1 2.5 1 1 2 3 3 3 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|435851554|ref|YP_007313140.1| - 2.6e-11 43.5 4.8 1.2e-06 28.5 0.4 2.2 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|435851554|ref|YP_007313140.1| - 3.9e-11 41.8 6.7 0.0039 16.8 0.1 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|435851554|ref|YP_007313140.1| - 4.8e-09 36.1 0.8 0.0024 17.7 0.2 4.1 1 1 2 3 3 3 2 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|435851554|ref|YP_007313140.1| - 4.9e-09 35.4 0.3 2.8e-05 23.1 0.0 2.1 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_6 PF13174.1 gi|435851554|ref|YP_007313140.1| - 1.3e-08 34.7 9.2 0.043 14.2 0.3 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|435851554|ref|YP_007313140.1| - 2.4e-08 33.6 7.2 0.021 14.7 0.2 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|435851554|ref|YP_007313140.1| - 2.2e-07 30.6 0.1 0.071 13.5 0.0 4.0 4 0 0 4 4 3 1 Tetratricopeptide repeat BTAD PF03704.12 gi|435851554|ref|YP_007313140.1| - 2.6e-06 27.7 2.3 0.016 15.5 0.2 2.6 1 1 2 3 3 3 2 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|435851554|ref|YP_007313140.1| - 4.7e-06 26.6 1.5 0.021 14.8 0.1 3.1 2 1 1 3 3 3 2 Tetratrico peptide repeat TPR_20 PF14561.1 gi|435851554|ref|YP_007313140.1| - 1.5e-05 24.9 2.8 0.01 15.9 1.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat FAT PF02259.18 gi|435851554|ref|YP_007313140.1| - 5.2e-05 22.3 6.4 0.049 12.6 0.5 2.8 1 1 2 3 3 3 2 FAT domain MIT PF04212.13 gi|435851554|ref|YP_007313140.1| - 0.00012 21.8 14.2 1.3 8.9 0.2 4.3 4 0 0 4 4 4 1 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.1 gi|435851554|ref|YP_007313140.1| - 0.00017 21.3 2.3 0.056 13.3 0.1 2.9 3 0 0 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat RPN7 PF10602.4 gi|435851554|ref|YP_007313140.1| - 0.0023 17.3 5.8 0.28 10.5 0.4 2.8 1 1 2 3 3 3 2 26S proteasome subunit RPN7 Amidase_5 PF05382.8 gi|435851554|ref|YP_007313140.1| - 0.0035 16.9 0.6 0.011 15.3 0.4 1.8 1 1 0 1 1 1 1 Bacteriophage peptidoglycan hydrolase Alkyl_sulf_dimr PF14863.1 gi|435851554|ref|YP_007313140.1| - 0.0052 17.0 3.7 0.25 11.5 0.4 2.6 1 1 2 3 3 3 2 Alkyl sulfatase dimerisation Coatomer_E PF04733.9 gi|435851554|ref|YP_007313140.1| - 0.0087 15.2 1.8 0.028 13.5 0.3 2.1 1 1 1 2 2 2 1 Coatomer epsilon subunit Ribosomal_S16 PF00886.14 gi|435851554|ref|YP_007313140.1| - 0.0099 15.5 1.7 0.33 10.6 0.0 3.0 1 1 2 3 3 3 1 Ribosomal protein S16 TPR_3 PF07720.7 gi|435851554|ref|YP_007313140.1| - 0.013 15.2 4.3 8.6 6.2 0.1 4.6 5 0 0 5 5 5 0 Tetratricopeptide repeat PPR PF01535.15 gi|435851554|ref|YP_007313140.1| - 0.014 15.3 2.4 17 5.6 0.0 4.1 5 0 0 5 5 4 0 PPR repeat DUF1514 PF07438.6 gi|435851554|ref|YP_007313140.1| - 0.024 14.5 0.4 0.061 13.2 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1514) TPR_15 PF13429.1 gi|435851554|ref|YP_007313140.1| - 0.024 13.7 7.0 0.049 12.6 4.8 1.5 1 1 0 1 1 1 0 Tetratricopeptide repeat ODV-E18 PF10717.4 gi|435851554|ref|YP_007313140.1| - 0.15 11.5 0.0 0.28 10.6 0.0 1.5 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Bacteriocin_IIi PF11758.3 gi|435851554|ref|YP_007313140.1| - 0.19 11.3 3.9 26 4.5 0.0 3.6 4 0 0 4 4 4 0 Aureocin-like type II bacteriocin TPR_21 PF09976.4 gi|435851554|ref|YP_007313140.1| - 2.3 8.1 11.8 2.1 8.2 1.3 2.7 2 1 1 3 3 3 0 Tetratricopeptide repeat ATP-synt_8 PF00895.15 gi|435851555|ref|YP_007313141.1| - 0.12 12.6 1.2 0.26 11.5 0.8 1.7 1 0 0 1 1 1 0 ATP synthase protein 8 DUF3244 PF11589.3 gi|435851555|ref|YP_007313141.1| - 0.2 11.3 1.1 0.34 10.6 0.3 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3244) PIG-P PF08510.7 gi|435851555|ref|YP_007313141.1| - 5.1 6.7 6.4 19 4.9 4.4 1.8 1 1 0 1 1 1 0 PIG-P Cupin_2 PF07883.6 gi|435851556|ref|YP_007313142.1| - 2.3e-16 59.0 0.0 3.1e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|435851556|ref|YP_007313142.1| - 0.0014 18.3 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|435851556|ref|YP_007313142.1| - 0.0035 16.9 0.0 0.0043 16.6 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.3 gi|435851556|ref|YP_007313142.1| - 0.017 15.0 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Mif2/CENP-C like Cupin_1 PF00190.17 gi|435851556|ref|YP_007313142.1| - 0.024 14.0 0.0 0.025 13.9 0.0 1.2 1 0 0 1 1 1 0 Cupin Cupin_3 PF05899.7 gi|435851556|ref|YP_007313142.1| - 0.046 13.1 0.0 0.079 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) DUF1958 PF09211.5 gi|435851556|ref|YP_007313142.1| - 0.13 12.3 0.2 1.5 8.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1958) AMP-binding PF00501.23 gi|435851557|ref|YP_007313143.1| - 1.1e-18 66.8 0.0 1.5e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme TspO_MBR PF03073.10 gi|435851558|ref|YP_007313144.1| - 0.71 9.3 8.2 0.55 9.7 4.8 1.4 1 1 0 1 1 1 0 TspO/MBR family DUF420 PF04238.7 gi|435851558|ref|YP_007313144.1| - 0.92 9.4 12.8 2.6 7.9 8.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF420) DUF434 PF04256.7 gi|435851559|ref|YP_007313145.1| - 1.1e-21 75.8 0.1 1.9e-21 75.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) Bombinin PF05298.6 gi|435851559|ref|YP_007313145.1| - 0.09 12.2 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Bombinin Prominin PF05478.6 gi|435851560|ref|YP_007313146.1| - 0.00046 17.8 2.8 0.00046 17.8 1.9 1.5 1 1 1 2 2 2 1 Prominin DivIC PF04977.10 gi|435851560|ref|YP_007313146.1| - 0.1 12.1 2.3 0.29 10.6 1.6 1.8 1 0 0 1 1 1 0 Septum formation initiator DUF4239 PF14023.1 gi|435851560|ref|YP_007313146.1| - 0.1 11.9 1.1 1.1 8.6 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4239) FTSW_RODA_SPOVE PF01098.14 gi|435851560|ref|YP_007313146.1| - 0.13 11.0 6.9 0.033 12.9 2.3 1.7 2 0 0 2 2 2 0 Cell cycle protein Nup54 PF13874.1 gi|435851560|ref|YP_007313146.1| - 0.16 11.6 3.7 0.28 10.8 2.6 1.3 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 DUF342 PF03961.8 gi|435851560|ref|YP_007313146.1| - 0.31 9.3 8.2 0.42 8.9 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) VIT1 PF01988.14 gi|435851560|ref|YP_007313146.1| - 0.33 10.4 2.6 0.76 9.2 1.8 1.7 1 1 0 1 1 1 0 VIT family DUF948 PF06103.6 gi|435851560|ref|YP_007313146.1| - 2.7 7.8 6.6 0.26 11.1 0.8 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1700 PF08006.6 gi|435851560|ref|YP_007313146.1| - 8.2 5.6 18.6 3.9 6.7 6.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1700) UbiA PF01040.13 gi|435851561|ref|YP_007313147.1| - 1.6e-35 122.5 23.5 2.3e-35 122.0 16.3 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF2206 PF09971.4 gi|435851561|ref|YP_007313147.1| - 0.05 12.4 11.2 0.084 11.6 7.7 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) RimK PF08443.6 gi|435851562|ref|YP_007313148.1| - 1.6e-39 135.3 0.0 2.1e-39 134.9 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|435851562|ref|YP_007313148.1| - 1.4e-16 60.0 0.0 2.6e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|435851562|ref|YP_007313148.1| - 5.5e-15 55.5 0.0 7.8e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|435851562|ref|YP_007313148.1| - 8.2e-12 44.5 0.0 1.2e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|435851562|ref|YP_007313148.1| - 1.8e-09 37.7 0.0 3e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.1 gi|435851562|ref|YP_007313148.1| - 7.7e-06 24.8 0.0 0.0043 15.9 0.0 2.2 2 0 0 2 2 2 2 YheC/D like ATP-grasp CP_ATPgrasp_1 PF04174.8 gi|435851562|ref|YP_007313148.1| - 1.1e-05 24.2 0.0 0.021 13.4 0.0 2.1 2 0 0 2 2 2 2 A circularly permuted ATPgrasp ATP-grasp PF02222.17 gi|435851562|ref|YP_007313148.1| - 0.0051 16.1 0.0 0.012 14.9 0.0 1.9 2 1 0 2 2 2 1 ATP-grasp domain PTH2 PF01981.11 gi|435851563|ref|YP_007313149.1| - 3.6e-42 142.7 0.0 4e-42 142.5 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF2622 PF11080.3 gi|435851563|ref|YP_007313149.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2622) Prismane PF03063.15 gi|435851565|ref|YP_007313151.1| - 6.1e-135 450.5 0.1 7e-135 450.3 0.1 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Rieske PF00355.21 gi|435851566|ref|YP_007313152.1| - 6.1e-16 57.7 0.0 7.5e-16 57.4 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|435851566|ref|YP_007313152.1| - 1.6e-11 43.8 0.0 3.7e-11 42.6 0.0 1.6 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain FMN_red PF03358.10 gi|435851567|ref|YP_007313153.1| - 1.8e-22 79.5 0.0 2.2e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|435851567|ref|YP_007313153.1| - 3.6e-15 55.9 0.0 4.7e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|435851567|ref|YP_007313153.1| - 6.9e-05 22.8 0.0 0.00013 22.0 0.0 1.5 1 1 0 1 1 1 1 Flavodoxin domain Abhydrolase_6 PF12697.2 gi|435851568|ref|YP_007313154.1| - 1.2e-40 139.8 0.7 1.4e-40 139.6 0.5 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|435851568|ref|YP_007313154.1| - 6.9e-23 81.4 0.0 4e-13 49.4 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|435851568|ref|YP_007313154.1| - 6.4e-20 71.3 0.0 2.6e-18 66.1 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|435851568|ref|YP_007313154.1| - 2.8e-06 26.0 0.0 3.6e-06 25.6 0.0 1.0 1 0 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.5 gi|435851568|ref|YP_007313154.1| - 4.1e-06 26.6 0.0 1.2e-05 25.1 0.0 1.7 2 0 0 2 2 2 1 TAP-like protein Hydrolase_4 PF12146.3 gi|435851568|ref|YP_007313154.1| - 0.0047 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase SCFA_trans PF02667.9 gi|435851568|ref|YP_007313154.1| - 0.026 13.3 0.0 0.033 12.9 0.0 1.2 1 0 0 1 1 1 0 Short chain fatty acid transporter DLH PF01738.13 gi|435851568|ref|YP_007313154.1| - 0.063 12.5 0.0 0.13 11.4 0.0 1.6 2 0 0 2 2 2 0 Dienelactone hydrolase family Hemerythrin PF01814.18 gi|435851569|ref|YP_007313155.1| - 1e-17 64.5 3.0 1e-17 64.5 2.1 2.3 2 1 0 2 2 2 1 Hemerythrin HHE cation binding domain UPF0228 PF05727.6 gi|435851569|ref|YP_007313155.1| - 0.0032 17.2 1.0 0.0052 16.5 0.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) Pec_lyase PF09492.5 gi|435851569|ref|YP_007313155.1| - 0.034 13.3 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 Pectic acid lyase DUF1699 PF08004.6 gi|435851570|ref|YP_007313156.1| - 1.3e-61 205.8 1.0 1.5e-61 205.6 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) TRCF PF03461.10 gi|435851570|ref|YP_007313156.1| - 0.063 13.2 0.1 4.8 7.1 0.1 2.2 2 0 0 2 2 2 0 TRCF domain DUF948 PF06103.6 gi|435851572|ref|YP_007313158.1| - 0.0066 16.2 0.2 0.0075 16.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DUF4577 PF15145.1 gi|435851572|ref|YP_007313158.1| - 0.027 14.3 0.5 0.03 14.2 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4577) ODV-E18 PF10717.4 gi|435851572|ref|YP_007313158.1| - 0.046 13.1 0.1 0.053 12.9 0.1 1.2 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Prominin PF05478.6 gi|435851572|ref|YP_007313158.1| - 0.074 10.5 0.1 0.088 10.3 0.0 1.1 1 0 0 1 1 1 0 Prominin Peptidase_S49_N PF08496.5 gi|435851572|ref|YP_007313158.1| - 0.094 12.5 0.2 0.1 12.3 0.2 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal DUF2730 PF10805.3 gi|435851572|ref|YP_007313158.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) DUF1043 PF06295.7 gi|435851572|ref|YP_007313158.1| - 0.12 12.0 0.6 0.15 11.6 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) DUF1517 PF07466.6 gi|435851572|ref|YP_007313158.1| - 0.14 11.1 0.4 0.14 11.1 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) DUF2614 PF11023.3 gi|435851572|ref|YP_007313158.1| - 0.14 11.9 0.7 0.15 11.8 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) DUF919 PF06034.6 gi|435851572|ref|YP_007313158.1| - 0.16 11.5 0.9 0.24 11.0 0.6 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) Phospholamban PF04272.9 gi|435851572|ref|YP_007313158.1| - 0.84 9.1 3.4 1.2 8.6 2.4 1.2 1 0 0 1 1 1 0 Phospholamban FUN14 PF04930.10 gi|435851572|ref|YP_007313158.1| - 2.6 8.3 5.3 5.1 7.4 3.7 1.5 1 1 0 1 1 1 0 FUN14 family HTH_5 PF01022.15 gi|435851573|ref|YP_007313159.1| - 2.5e-13 49.4 0.2 3.6e-13 48.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|435851573|ref|YP_007313159.1| - 3.6e-12 45.9 0.2 4.9e-12 45.4 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|435851573|ref|YP_007313159.1| - 1e-06 28.2 0.1 1.4e-06 27.9 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|435851573|ref|YP_007313159.1| - 2.5e-06 27.1 0.1 3.3e-06 26.7 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|435851573|ref|YP_007313159.1| - 2.9e-06 26.8 0.2 4.4e-06 26.2 0.2 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|435851573|ref|YP_007313159.1| - 1.1e-05 25.0 0.0 1.7e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|435851573|ref|YP_007313159.1| - 4.4e-05 22.7 0.2 0.00038 19.7 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|435851573|ref|YP_007313159.1| - 0.00017 21.2 0.4 0.0016 18.1 0.3 2.0 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family Rrf2 PF02082.15 gi|435851573|ref|YP_007313159.1| - 0.00072 19.6 0.1 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.1 gi|435851573|ref|YP_007313159.1| - 0.0015 18.5 0.2 0.002 18.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|435851573|ref|YP_007313159.1| - 0.0016 18.3 0.1 0.0027 17.5 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.11 gi|435851573|ref|YP_007313159.1| - 0.0075 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain Mga PF05043.8 gi|435851573|ref|YP_007313159.1| - 0.0099 16.1 0.9 0.077 13.2 0.5 2.1 1 1 0 1 1 1 1 Mga helix-turn-helix domain HTH_36 PF13730.1 gi|435851573|ref|YP_007313159.1| - 0.012 15.6 0.1 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|435851573|ref|YP_007313159.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HxlR PF01638.12 gi|435851573|ref|YP_007313159.1| - 0.037 13.6 0.2 0.049 13.2 0.1 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix GntR PF00392.16 gi|435851573|ref|YP_007313159.1| - 0.043 13.2 0.0 0.069 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|435851573|ref|YP_007313159.1| - 0.045 13.5 0.0 0.065 13.0 0.0 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|435851573|ref|YP_007313159.1| - 0.046 13.8 0.1 0.055 13.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix DUF2513 PF10711.4 gi|435851573|ref|YP_007313159.1| - 0.05 13.6 0.2 0.066 13.3 0.1 1.1 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF2250 PF10007.4 gi|435851573|ref|YP_007313159.1| - 0.064 13.1 0.2 0.078 12.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_41 PF14502.1 gi|435851573|ref|YP_007313159.1| - 0.087 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.1 gi|435851573|ref|YP_007313159.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_10 PF04967.7 gi|435851573|ref|YP_007313159.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_28 PF13518.1 gi|435851573|ref|YP_007313159.1| - 0.14 12.1 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TRAM PF01938.15 gi|435851574|ref|YP_007313160.1| - 8.4e-17 60.7 1.3 8.9e-17 60.6 0.9 1.0 1 0 0 1 1 1 1 TRAM domain RsgI_N PF12791.2 gi|435851574|ref|YP_007313160.1| - 0.027 14.1 0.1 0.59 9.8 0.0 2.0 2 0 0 2 2 2 0 Anti-sigma factor N-terminus TruD PF01142.13 gi|435851575|ref|YP_007313161.1| - 6.3e-113 377.2 0.0 7e-113 377.1 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) CTP_synth_N PF06418.9 gi|435851576|ref|YP_007313162.1| - 2.3e-130 433.6 0.7 3.5e-130 433.0 0.5 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|435851576|ref|YP_007313162.1| - 8.8e-52 175.3 0.0 1.9e-51 174.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.18 gi|435851576|ref|YP_007313162.1| - 8.6e-10 38.3 0.1 1.4e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.8 gi|435851576|ref|YP_007313162.1| - 6.2e-09 35.6 0.0 2.7e-08 33.5 0.0 2.1 2 1 0 2 2 2 1 Peptidase C26 DUF2207 PF09972.4 gi|435851577|ref|YP_007313163.1| - 0.14 10.7 3.7 0.18 10.3 2.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Trm112p PF03966.11 gi|435851578|ref|YP_007313164.1| - 2.9e-10 40.3 1.9 5e-10 39.5 1.3 1.4 1 1 0 1 1 1 1 Trm112p-like protein Elf1 PF05129.8 gi|435851578|ref|YP_007313164.1| - 0.00098 18.7 0.1 0.0011 18.5 0.0 1.0 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Cys_rich_KTR PF14205.1 gi|435851578|ref|YP_007313164.1| - 0.002 17.5 1.1 0.0035 16.7 0.8 1.4 1 1 0 1 1 1 1 Cysteine-rich KTR Lar_restr_allev PF14354.1 gi|435851578|ref|YP_007313164.1| - 0.0055 16.9 0.1 0.0067 16.6 0.1 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-piccolo PF05715.8 gi|435851578|ref|YP_007313164.1| - 0.02 14.8 0.2 0.028 14.4 0.1 1.3 1 0 0 1 1 1 0 Piccolo Zn-finger CK_II_beta PF01214.13 gi|435851578|ref|YP_007313164.1| - 0.022 14.2 0.4 0.024 14.1 0.2 1.0 1 0 0 1 1 1 0 Casein kinase II regulatory subunit Prim_Zn_Ribbon PF08273.7 gi|435851578|ref|YP_007313164.1| - 0.024 14.6 0.9 0.062 13.3 0.6 1.6 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase A2L_zn_ribbon PF08792.5 gi|435851578|ref|YP_007313164.1| - 0.074 12.5 2.1 0.76 9.3 1.4 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-DNA_Pol PF08996.5 gi|435851578|ref|YP_007313164.1| - 0.094 12.0 0.0 0.094 12.0 0.0 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zf-C4_Topoisom PF01396.14 gi|435851578|ref|YP_007313164.1| - 0.44 10.0 2.6 0.56 9.7 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF3797 PF12677.2 gi|435851578|ref|YP_007313164.1| - 0.44 10.1 2.5 0.98 9.0 1.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) Gate PF07670.9 gi|435851579|ref|YP_007313165.1| - 3e-06 27.1 22.7 0.00012 21.9 4.7 3.4 1 1 2 3 3 3 2 Nucleoside recognition Plectin PF00681.15 gi|435851579|ref|YP_007313165.1| - 0.04 13.4 0.0 0.079 12.5 0.0 1.5 1 0 0 1 1 1 0 Plectin repeat Shisa PF13908.1 gi|435851579|ref|YP_007313165.1| - 0.2 11.7 0.2 0.38 10.9 0.1 1.5 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Response_reg PF00072.19 gi|435851580|ref|YP_007313166.1| - 3.6e-28 97.8 2.1 4e-28 97.6 1.4 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheB_methylest PF01339.12 gi|435851581|ref|YP_007313167.1| - 2.5e-64 216.0 0.5 4.9e-64 215.1 0.4 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|435851581|ref|YP_007313167.1| - 2.2e-22 79.1 0.6 1.2e-21 76.8 0.1 2.3 2 1 0 2 2 2 1 Response regulator receiver domain TIM PF00121.13 gi|435851581|ref|YP_007313167.1| - 0.049 12.6 0.3 2.4 7.1 0.1 2.1 2 0 0 2 2 2 0 Triosephosphate isomerase CheW PF01584.14 gi|435851582|ref|YP_007313168.1| - 1e-23 83.2 2.1 2.7e-23 81.9 0.9 2.1 2 0 0 2 2 2 1 CheW-like domain P2 PF07194.6 gi|435851582|ref|YP_007313168.1| - 1.8e-23 82.1 1.5 4.8e-23 80.8 1.0 1.8 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c PF02518.21 gi|435851582|ref|YP_007313168.1| - 7.2e-21 73.9 0.6 4e-20 71.5 0.1 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.18 gi|435851582|ref|YP_007313168.1| - 1.4e-20 73.0 1.6 2.1e-20 72.5 0.2 2.0 2 0 0 2 2 2 1 Hpt domain H-kinase_dim PF02895.9 gi|435851582|ref|YP_007313168.1| - 5.4e-20 71.4 3.9 5.4e-20 71.4 2.7 2.4 2 1 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.1 gi|435851582|ref|YP_007313168.1| - 0.00075 19.1 0.0 0.0019 17.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|435851582|ref|YP_007313168.1| - 0.00096 18.9 0.1 0.0039 16.9 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Fes1 PF08609.5 gi|435851582|ref|YP_007313168.1| - 0.015 15.7 1.1 0.015 15.7 0.7 2.5 2 0 0 2 2 2 0 Nucleotide exchange factor Fes1 DUF1265 PF06887.9 gi|435851582|ref|YP_007313168.1| - 0.064 12.9 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1265) GTPase_Cys_C PF12631.2 gi|435851582|ref|YP_007313168.1| - 1.5 9.3 5.0 2.9 8.3 0.0 3.7 4 0 0 4 4 4 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Snf7 PF03357.16 gi|435851582|ref|YP_007313168.1| - 1.7 8.0 14.5 0.027 13.8 3.5 2.6 2 1 0 2 2 2 0 Snf7 CheC PF04509.7 gi|435851583|ref|YP_007313169.1| - 2.3e-07 30.4 0.0 5.4e-07 29.2 0.0 1.7 2 0 0 2 2 2 1 CheC-like family CheX PF13690.1 gi|435851583|ref|YP_007313169.1| - 0.017 15.0 0.0 0.21 11.4 0.0 2.2 1 1 1 2 2 2 0 Chemotaxis phosphatase CheX CheR PF01739.13 gi|435851584|ref|YP_007313170.1| - 5.4e-54 182.4 0.1 8.6e-54 181.8 0.0 1.3 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|435851584|ref|YP_007313170.1| - 1.8e-14 52.8 0.6 3.4e-14 51.9 0.4 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_18 PF12847.2 gi|435851584|ref|YP_007313170.1| - 0.00012 22.6 0.0 0.00019 21.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|435851584|ref|YP_007313170.1| - 0.00054 20.3 0.1 0.0075 16.7 0.1 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435851584|ref|YP_007313170.1| - 0.022 14.3 0.1 1.4 8.5 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain UN_NPL4 PF11543.3 gi|435851584|ref|YP_007313170.1| - 0.68 10.2 3.1 0.78 10.0 0.3 2.5 3 1 0 3 3 3 0 Nuclear pore localisation protein NPL4 CheC PF04509.7 gi|435851585|ref|YP_007313171.1| - 8.7e-16 57.3 0.4 4.7e-10 39.0 0.2 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|435851585|ref|YP_007313171.1| - 1.9e-07 30.8 0.1 0.00068 19.4 0.0 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheD PF03975.8 gi|435851586|ref|YP_007313172.1| - 4.9e-31 106.8 0.1 5.8e-31 106.6 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction DUF998 PF06197.8 gi|435851587|ref|YP_007313173.1| - 7.9e-05 22.0 5.7 0.00014 21.2 4.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF2621 PF11084.3 gi|435851587|ref|YP_007313173.1| - 0.03 13.9 0.1 0.03 13.9 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2621) TPPK_C PF12555.3 gi|435851587|ref|YP_007313173.1| - 0.034 13.8 0.5 0.074 12.7 0.3 1.7 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Git3 PF11710.3 gi|435851587|ref|YP_007313173.1| - 0.11 12.0 3.8 0.17 11.4 2.7 1.3 1 0 0 1 1 1 0 G protein-coupled glucose receptor regulating Gpa2 DUF2079 PF09852.4 gi|435851587|ref|YP_007313173.1| - 0.42 9.2 5.6 0.59 8.7 3.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) CheC PF04509.7 gi|435851588|ref|YP_007313174.1| - 3.8e-16 58.5 0.1 2e-07 30.6 0.0 2.6 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|435851588|ref|YP_007313174.1| - 1.1e-11 44.4 0.2 1.2e-10 41.1 0.1 2.1 2 0 0 2 2 2 1 Chemotaxis phosphatase CheX FliM PF02154.10 gi|435851588|ref|YP_007313174.1| - 0.12 12.0 1.0 0.22 11.1 0.7 1.6 1 1 0 1 1 1 0 Flagellar motor switch protein FliM Rbsn PF11464.3 gi|435851589|ref|YP_007313175.1| - 0.062 12.8 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Rabenosyn Rab binding domain DUF4214 PF13946.1 gi|435851591|ref|YP_007313177.1| - 9.5e-11 41.2 0.0 2.6e-10 39.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4214) Methyltransf_23 PF13489.1 gi|435851591|ref|YP_007313177.1| - 3.5e-05 23.5 0.2 6.8e-05 22.6 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|435851591|ref|YP_007313177.1| - 0.001 19.4 0.0 0.0021 18.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|435851591|ref|YP_007313177.1| - 0.0078 16.6 0.0 0.013 15.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GntP_permease PF02447.11 gi|435851592|ref|YP_007313178.1| - 1.6e-61 208.1 26.8 2.2e-61 207.6 18.6 1.1 1 0 0 1 1 1 1 GntP family permease DUF2852 PF11014.3 gi|435851592|ref|YP_007313178.1| - 0.034 14.0 0.4 7.3 6.5 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2852) Phage_P2_GpE PF06528.7 gi|435851592|ref|YP_007313178.1| - 0.044 13.2 1.7 0.13 11.7 0.0 2.2 2 0 0 2 2 2 0 Phage P2 GpE FpoO PF10621.4 gi|435851593|ref|YP_007313179.1| - 2.1e-40 137.5 1.1 2.3e-40 137.3 0.7 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO zf-AD PF07776.10 gi|435851593|ref|YP_007313179.1| - 0.0014 18.5 3.8 0.0058 16.5 2.9 1.7 1 1 1 2 2 2 1 Zinc-finger associated domain (zf-AD) PhnA_Zn_Ribbon PF08274.7 gi|435851593|ref|YP_007313179.1| - 0.11 12.2 0.3 0.11 12.2 0.2 2.3 3 0 0 3 3 3 0 PhnA Zinc-Ribbon amfpi-1 PF12190.3 gi|435851593|ref|YP_007313179.1| - 0.23 12.0 1.8 0.34 11.4 1.3 1.2 1 0 0 1 1 1 0 Fungal protease inhibitor DZR PF12773.2 gi|435851593|ref|YP_007313179.1| - 0.49 10.2 4.3 4.8 7.0 3.0 2.4 1 1 0 1 1 1 0 Double zinc ribbon Oxidored_q1 PF00361.15 gi|435851594|ref|YP_007313180.1| - 8.7e-64 215.3 23.7 8.7e-64 215.3 16.4 2.8 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|435851594|ref|YP_007313180.1| - 0.0004 19.8 2.0 0.002 17.6 1.4 2.3 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Bacillus_PapR PF05968.6 gi|435851594|ref|YP_007313180.1| - 0.087 12.9 0.5 0.087 12.9 0.4 3.1 4 1 0 4 4 4 0 Bacillus PapR protein Oxidored_q1 PF00361.15 gi|435851595|ref|YP_007313181.1| - 1e-63 215.1 28.8 1e-63 215.1 20.0 2.7 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|435851595|ref|YP_007313181.1| - 0.008 16.0 6.8 0.008 16.0 4.7 5.2 3 3 1 5 5 5 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus VirArc_Nuclease PF12187.3 gi|435851595|ref|YP_007313181.1| - 0.028 13.8 0.1 0.058 12.7 0.0 1.4 1 0 0 1 1 1 0 Viral/Archaeal nuclease Oxidored_q1 PF00361.15 gi|435851596|ref|YP_007313182.1| - 3.4e-76 256.0 16.5 3.4e-76 256.0 11.4 3.2 3 1 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|435851596|ref|YP_007313182.1| - 2.4e-13 49.4 0.6 2.4e-13 49.4 0.4 3.2 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|435851596|ref|YP_007313182.1| - 0.0032 17.0 1.3 0.0032 17.0 0.9 2.3 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Oxidored_q2 PF00420.19 gi|435851597|ref|YP_007313183.1| - 5.9e-25 86.7 6.2 6.7e-25 86.5 4.3 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q3 PF00499.15 gi|435851598|ref|YP_007313184.1| - 0.00015 21.5 7.4 0.00018 21.3 5.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF3792 PF12670.2 gi|435851598|ref|YP_007313184.1| - 0.047 13.5 2.3 3.2 7.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) DUF2208 PF09973.4 gi|435851598|ref|YP_007313184.1| - 0.22 10.7 2.4 0.26 10.4 1.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) CAAD PF14159.1 gi|435851598|ref|YP_007313184.1| - 0.28 10.8 3.0 0.24 11.0 1.3 1.6 1 1 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Oxidored_q3 PF00499.15 gi|435851599|ref|YP_007313185.1| - 6.9e-17 61.5 10.2 6.9e-17 61.5 7.1 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|435851599|ref|YP_007313185.1| - 0.0055 16.6 13.9 0.0055 16.6 9.6 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) DUF805 PF05656.9 gi|435851599|ref|YP_007313185.1| - 0.3 10.9 4.3 0.47 10.2 3.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF805) Claudin_2 PF13903.1 gi|435851599|ref|YP_007313185.1| - 0.6 9.7 10.5 0.74 9.4 7.2 1.2 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3165 PF11364.3 gi|435851599|ref|YP_007313185.1| - 1.1 9.4 14.6 2.4 8.3 10.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3165) DUF2101 PF09874.4 gi|435851599|ref|YP_007313185.1| - 1.5 8.2 9.9 2.6 7.4 6.9 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2101) DUF4239 PF14023.1 gi|435851599|ref|YP_007313185.1| - 1.7 7.9 7.5 1.5 8.1 4.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4239) Bax1-I PF01027.15 gi|435851599|ref|YP_007313185.1| - 1.7 8.1 15.6 2.2 7.8 10.8 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF2109 PF09882.4 gi|435851599|ref|YP_007313185.1| - 2 8.3 13.1 1.3 8.9 7.2 1.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2109) DUF998 PF06197.8 gi|435851599|ref|YP_007313185.1| - 2.4 7.4 17.8 2.9 7.1 12.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) Fer4 PF00037.22 gi|435851600|ref|YP_007313186.1| - 8.8e-15 53.6 14.3 2.9e-09 36.1 2.2 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435851600|ref|YP_007313186.1| - 1e-11 44.4 14.0 1e-08 34.8 6.4 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435851600|ref|YP_007313186.1| - 6.3e-11 42.4 7.5 6.3e-11 42.4 5.2 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435851600|ref|YP_007313186.1| - 8.5e-10 38.7 6.8 8.5e-10 38.7 4.7 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851600|ref|YP_007313186.1| - 9.8e-10 39.0 4.4 0.00037 21.1 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|435851600|ref|YP_007313186.1| - 1.1e-08 34.8 6.4 2e-08 33.9 4.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435851600|ref|YP_007313186.1| - 1.1e-08 34.9 5.5 2.4e-08 33.8 3.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851600|ref|YP_007313186.1| - 6.2e-08 32.1 15.4 9.1e-05 22.1 2.0 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435851600|ref|YP_007313186.1| - 1e-06 29.0 5.6 0.00044 20.6 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435851600|ref|YP_007313186.1| - 8.6e-06 25.4 17.5 1e-05 25.1 2.2 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435851600|ref|YP_007313186.1| - 6.9e-05 22.8 13.4 0.0045 17.2 2.4 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|435851600|ref|YP_007313186.1| - 7.1e-05 23.0 9.7 0.0049 17.1 7.0 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435851600|ref|YP_007313186.1| - 9.5e-05 22.8 7.3 0.0011 19.4 0.6 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|435851600|ref|YP_007313186.1| - 0.00032 21.0 19.5 0.02 15.4 1.7 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435851600|ref|YP_007313186.1| - 0.0023 18.2 10.9 0.0034 17.7 1.9 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|435851600|ref|YP_007313186.1| - 0.079 12.8 2.6 1.7 8.5 2.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF4033 PF13225.1 gi|435851600|ref|YP_007313186.1| - 5.6 6.6 6.5 0.6 9.7 0.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4033) NADHdh PF00146.16 gi|435851601|ref|YP_007313187.1| - 1.2e-94 316.9 18.6 1.5e-94 316.5 12.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|435851602|ref|YP_007313188.1| - 2.1e-73 246.6 0.0 1.5e-49 168.4 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|435851602|ref|YP_007313188.1| - 1.2e-08 34.2 0.0 6.3e-08 31.8 0.0 1.9 2 0 0 2 2 2 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.14 gi|435851603|ref|YP_007313189.1| - 6.3e-32 109.8 0.1 1.5e-31 108.6 0.0 1.6 2 1 1 3 3 3 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LBP_BPI_CETP_C PF02886.12 gi|435851603|ref|YP_007313189.1| - 0.044 12.9 0.0 0.06 12.5 0.0 1.2 1 0 0 1 1 1 0 LBP / BPI / CETP family, C-terminal domain Oxidored_q6 PF01058.17 gi|435851604|ref|YP_007313190.1| - 6.1e-23 80.8 0.0 8.9e-23 80.3 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.14 gi|435851605|ref|YP_007313191.1| - 5.8e-26 90.2 5.4 8.3e-26 89.7 3.6 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TRAM_LAG1_CLN8 PF03798.11 gi|435851605|ref|YP_007313191.1| - 0.092 12.2 5.0 0.11 12.0 3.5 1.3 1 1 0 1 1 1 0 TLC domain NfeD PF01957.13 gi|435851605|ref|YP_007313191.1| - 0.42 10.7 2.2 0.93 9.6 0.5 1.9 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF4428 PF14471.1 gi|435851606|ref|YP_007313192.1| - 0.00051 19.7 4.0 0.14 11.8 1.2 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF4428) DUF35_N PF12172.3 gi|435851606|ref|YP_007313192.1| - 0.0032 17.3 1.8 1.5 8.7 0.0 2.6 3 0 0 3 3 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) A2L_zn_ribbon PF08792.5 gi|435851606|ref|YP_007313192.1| - 0.015 14.7 0.4 0.015 14.7 0.3 3.4 3 1 0 3 3 3 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|435851606|ref|YP_007313192.1| - 0.048 13.4 0.7 0.048 13.4 0.5 2.6 3 1 0 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|435851606|ref|YP_007313192.1| - 0.048 13.1 0.0 0.048 13.1 0.0 2.1 3 1 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|435851606|ref|YP_007313192.1| - 0.076 13.3 5.3 0.12 12.7 0.4 2.4 2 0 0 2 2 2 0 Restriction alleviation protein Lar Prok-RING_2 PF14445.1 gi|435851606|ref|YP_007313192.1| - 0.09 12.7 0.2 0.09 12.7 0.2 2.9 3 0 0 3 3 3 0 Prokaryotic RING finger family 2 Arc_trans_TRASH PF08394.5 gi|435851606|ref|YP_007313192.1| - 0.098 12.8 1.4 0.098 12.8 0.9 3.2 3 0 0 3 3 3 0 Archaeal TRASH domain FdhE PF04216.7 gi|435851606|ref|YP_007313192.1| - 0.27 10.9 2.0 3.1 7.4 0.4 2.1 1 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.1 gi|435851606|ref|YP_007313192.1| - 0.35 10.1 0.2 0.35 10.1 0.1 3.1 3 1 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|435851606|ref|YP_007313192.1| - 0.37 10.1 14.6 1.6 8.0 2.8 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|435851606|ref|YP_007313192.1| - 1.4 8.7 7.8 0.89 9.4 0.4 2.7 2 2 0 2 2 2 0 Double zinc ribbon Sgf11 PF08209.6 gi|435851606|ref|YP_007313192.1| - 1.5 8.2 6.4 0.55 9.5 0.2 2.7 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) GFA PF04828.9 gi|435851606|ref|YP_007313192.1| - 1.5 8.7 5.0 0.33 10.9 0.4 2.3 2 1 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-C4 PF00105.13 gi|435851606|ref|YP_007313192.1| - 1.7 8.9 4.8 11 6.3 0.6 2.5 2 1 0 2 2 2 0 Zinc finger, C4 type (two domains) Prim_Zn_Ribbon PF08273.7 gi|435851606|ref|YP_007313192.1| - 2.5 8.2 11.0 9.8 6.3 2.1 2.6 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase Auto_anti-p27 PF06677.7 gi|435851606|ref|YP_007313192.1| - 4.9 6.9 0.0 4.9 6.9 0.0 3.3 4 0 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PhnA_Zn_Ribbon PF08274.7 gi|435851606|ref|YP_007313192.1| - 6.3 6.6 7.1 1.1 9.0 0.1 2.9 3 0 0 3 3 3 0 PhnA Zinc-Ribbon C1_1 PF00130.17 gi|435851606|ref|YP_007313192.1| - 7.5 6.3 8.7 2.5 7.9 0.6 2.8 2 2 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF22 PF01629.11 gi|435851607|ref|YP_007313193.1| - 4.7e-29 100.1 0.3 5.8e-29 99.8 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF22 HTH_AsnC-type PF13404.1 gi|435851608|ref|YP_007313194.1| - 8.3e-13 47.6 0.0 1.2e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|435851608|ref|YP_007313194.1| - 1.3e-12 46.9 0.0 2.2e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|435851608|ref|YP_007313194.1| - 8e-10 38.2 0.3 3.9e-09 36.0 0.0 2.0 2 0 0 2 2 2 1 AsnC family HTH_IclR PF09339.5 gi|435851608|ref|YP_007313194.1| - 2.9e-06 26.7 0.1 4.6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|435851608|ref|YP_007313194.1| - 8.8e-06 25.2 0.9 1.6e-05 24.4 0.1 1.8 2 0 0 2 2 2 1 HTH domain HTH_Mga PF08280.6 gi|435851608|ref|YP_007313194.1| - 5e-05 22.9 0.1 0.00013 21.6 0.1 1.7 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR_2 PF12802.2 gi|435851608|ref|YP_007313194.1| - 6.9e-05 22.4 0.0 0.0001 21.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|435851608|ref|YP_007313194.1| - 0.00013 21.7 0.1 0.00028 20.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|435851608|ref|YP_007313194.1| - 0.0015 18.4 0.4 0.0035 17.2 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|435851608|ref|YP_007313194.1| - 0.0018 18.5 0.0 0.0042 17.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|435851608|ref|YP_007313194.1| - 0.0049 16.7 0.2 0.014 15.3 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|435851608|ref|YP_007313194.1| - 0.0055 16.3 0.1 0.013 15.2 0.1 1.6 1 0 0 1 1 1 1 MarR family Mga PF05043.8 gi|435851608|ref|YP_007313194.1| - 0.0065 16.7 0.7 0.099 12.9 0.0 2.3 2 1 0 2 2 2 1 Mga helix-turn-helix domain Rrf2 PF02082.15 gi|435851608|ref|YP_007313194.1| - 0.014 15.4 0.1 0.067 13.3 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator HTH_10 PF04967.7 gi|435851608|ref|YP_007313194.1| - 0.015 14.8 0.2 0.029 13.9 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_45 PF14947.1 gi|435851608|ref|YP_007313194.1| - 0.021 14.6 0.3 0.055 13.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix TFIIE_alpha PF02002.12 gi|435851608|ref|YP_007313194.1| - 0.024 14.1 0.0 0.049 13.1 0.0 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit TrmB PF01978.14 gi|435851608|ref|YP_007313194.1| - 0.029 14.0 0.0 0.075 12.7 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|435851608|ref|YP_007313194.1| - 0.043 13.6 0.2 0.079 12.8 0.1 1.7 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_Tnp_ISL3 PF13542.1 gi|435851608|ref|YP_007313194.1| - 0.049 12.8 0.0 0.084 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 FaeA PF04703.7 gi|435851608|ref|YP_007313194.1| - 0.049 13.7 0.1 0.13 12.4 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein HTH_DeoR PF08220.7 gi|435851608|ref|YP_007313194.1| - 0.055 13.0 0.0 0.16 11.5 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|435851608|ref|YP_007313194.1| - 0.075 13.0 0.2 0.2 11.7 0.1 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_CodY PF08222.6 gi|435851608|ref|YP_007313194.1| - 0.099 12.0 0.5 0.43 9.9 0.2 2.2 2 1 0 2 2 2 0 CodY helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|435851608|ref|YP_007313194.1| - 0.1 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Pup PF05639.6 gi|435851608|ref|YP_007313194.1| - 0.18 12.3 0.5 0.52 10.8 0.0 1.9 2 0 0 2 2 2 0 Pup-like protein OrfB_Zn_ribbon PF07282.6 gi|435851609|ref|YP_007313195.1| - 1.3e-23 82.4 0.4 1.3e-23 82.4 0.3 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|435851609|ref|YP_007313195.1| - 5.3e-13 48.8 0.1 8e-13 48.3 0.1 1.2 1 0 0 1 1 1 1 Probable transposase NTS PF15447.1 gi|435851609|ref|YP_007313195.1| - 0.025 14.9 0.0 0.25 11.7 0.0 2.6 2 0 0 2 2 2 0 N-terminal segments of PfEMP1 GxDLY PF14607.1 gi|435851609|ref|YP_007313195.1| - 0.083 12.3 0.1 0.16 11.4 0.1 1.4 1 0 0 1 1 1 0 N-terminus of Esterase_SGNH_hydro-type DUF2387 PF09526.5 gi|435851609|ref|YP_007313195.1| - 0.2 11.6 2.9 5.3 7.0 0.9 2.8 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) SBP_bac_3 PF00497.15 gi|435851610|ref|YP_007313196.1| - 1.4e-63 214.1 1.1 1.7e-63 213.9 0.8 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 OrfB_IS605 PF01385.14 gi|435851611|ref|YP_007313197.1| - 1.6e-47 161.7 3.2 1.6e-47 161.7 2.2 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435851611|ref|YP_007313197.1| - 4.7e-23 80.6 0.1 9.4e-23 79.6 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435851611|ref|YP_007313197.1| - 1.7e-20 72.0 0.2 3.7e-20 70.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|435851611|ref|YP_007313197.1| - 0.11 12.3 0.6 0.21 11.4 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|435851611|ref|YP_007313197.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RanBP PF00641.13 gi|435851611|ref|YP_007313197.1| - 1.3 8.1 4.3 5.9 6.0 0.5 2.5 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Rubredoxin PF00301.15 gi|435851611|ref|YP_007313197.1| - 1.8 8.4 5.4 27 4.7 3.7 2.6 1 1 0 1 1 1 0 Rubredoxin PIN_2 PF10130.4 gi|435851612|ref|YP_007313198.1| - 1.1e-05 25.5 0.0 1.1e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|435851612|ref|YP_007313198.1| - 0.0065 17.1 0.0 0.0069 17.0 0.0 1.1 1 0 0 1 1 1 1 PIN domain HTH_Tnp_ISL3 PF13542.1 gi|435851613|ref|YP_007313199.1| - 0.011 14.8 0.0 0.03 13.5 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 VirE_N PF08800.5 gi|435851614|ref|YP_007313200.1| - 0.047 13.4 0.2 1.9 8.2 0.0 2.5 2 0 0 2 2 2 0 VirE N-terminal domain TrmB PF01978.14 gi|435851614|ref|YP_007313200.1| - 0.071 12.8 0.1 0.17 11.5 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB YcfA PF07927.7 gi|435851615|ref|YP_007313201.1| - 5.6e-14 51.8 0.1 6.9e-14 51.5 0.1 1.1 1 0 0 1 1 1 1 YcfA-like protein UPF0150 PF03681.10 gi|435851616|ref|YP_007313202.1| - 3e-20 71.5 0.0 4.2e-20 71.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) CagY_M PF07337.6 gi|435851616|ref|YP_007313202.1| - 0.0042 16.5 1.3 0.54 9.7 0.9 2.3 1 1 0 1 1 1 1 DC-EC Repeat DUF3832 PF12909.2 gi|435851616|ref|YP_007313202.1| - 0.036 14.1 0.0 0.04 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) DUF4373 PF14297.1 gi|435851616|ref|YP_007313202.1| - 0.069 13.4 0.0 0.075 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4373) OrfB_Zn_ribbon PF07282.6 gi|435851618|ref|YP_007313204.1| - 7.1e-22 76.8 0.6 1.5e-21 75.7 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|435851618|ref|YP_007313204.1| - 1.3e-16 60.7 0.3 1.8e-16 60.2 0.2 1.3 1 0 0 1 1 1 1 Probable transposase OmpH PF03938.9 gi|435851618|ref|YP_007313204.1| - 0.019 14.9 1.0 0.027 14.4 0.1 1.6 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Plasmid_stabil PF05016.9 gi|435851619|ref|YP_007313205.1| - 9.4e-13 48.3 0.2 1e-12 48.2 0.1 1.0 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|435851619|ref|YP_007313205.1| - 1.4e-05 25.0 0.0 1.7e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) RHH_1 PF01402.16 gi|435851620|ref|YP_007313206.1| - 0.025 14.4 0.4 0.28 11.1 0.0 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family GvpK PF05121.7 gi|435851620|ref|YP_007313206.1| - 0.073 12.8 0.1 0.098 12.4 0.0 1.4 1 1 0 1 1 1 0 Gas vesicle protein K Fic PF02661.13 gi|435851623|ref|YP_007313209.1| - 1e-09 38.9 1.3 3e-08 34.2 0.9 2.6 1 1 0 1 1 1 1 Fic/DOC family Epimerase_2 PF02350.14 gi|435851624|ref|YP_007313210.1| - 1.2e-110 369.5 0.0 1.4e-110 369.3 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.1 gi|435851624|ref|YP_007313210.1| - 0.0042 17.2 0.0 0.0075 16.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|435851624|ref|YP_007313210.1| - 0.0048 16.7 0.0 0.0088 15.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF354 PF04007.7 gi|435851624|ref|YP_007313210.1| - 0.0089 14.9 0.0 0.049 12.4 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF354) MGDG_synth PF06925.6 gi|435851624|ref|YP_007313210.1| - 0.092 12.6 0.0 0.58 10.0 0.0 2.0 2 0 0 2 2 2 0 Monogalactosyldiacylglycerol (MGDG) synthase Polysacc_synt PF01943.12 gi|435851625|ref|YP_007313211.1| - 2.5e-23 82.7 35.9 2.5e-23 82.7 24.9 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|435851625|ref|YP_007313211.1| - 2.1e-20 73.2 24.2 2.1e-20 73.2 16.8 2.6 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|435851625|ref|YP_007313211.1| - 7.6e-20 71.2 46.3 1.4e-13 50.9 18.3 4.0 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|435851625|ref|YP_007313211.1| - 1.9e-06 26.6 43.8 1.9e-06 26.6 30.3 2.2 1 1 1 2 2 2 1 MviN-like protein DDE_Tnp_ISL3 PF01610.12 gi|435851626|ref|YP_007313212.1| - 1.1e-65 221.6 7.5 1.5e-65 221.2 5.2 1.2 1 0 0 1 1 1 1 Transposase zf-ISL3 PF14690.1 gi|435851626|ref|YP_007313212.1| - 2.5e-14 53.0 2.6 5.2e-14 52.0 1.8 1.6 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Tnp_ISL3 PF13542.1 gi|435851626|ref|YP_007313212.1| - 1.2e-11 43.5 0.0 2.8e-11 42.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.1 gi|435851626|ref|YP_007313212.1| - 0.0051 16.4 0.1 0.02 14.5 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain QueC PF06508.8 gi|435851627|ref|YP_007313213.1| - 4.6e-05 22.7 0.7 0.00027 20.3 0.1 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC PMT_2 PF13231.1 gi|435851628|ref|YP_007313214.1| - 0.0011 18.8 23.0 0.0011 18.8 15.9 4.9 4 1 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase AMP-binding_C_2 PF14535.1 gi|435851630|ref|YP_007313216.1| - 0.0018 18.2 0.4 0.0051 16.8 0.3 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Epimerase PF01370.16 gi|435851631|ref|YP_007313217.1| - 3.1e-64 216.6 0.1 3.8e-64 216.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|435851631|ref|YP_007313217.1| - 4.1e-22 78.2 0.1 5.4e-22 77.8 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|435851631|ref|YP_007313217.1| - 2e-19 69.5 0.2 9.6e-19 67.3 0.2 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|435851631|ref|YP_007313217.1| - 6.4e-16 58.0 0.0 8.4e-16 57.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|435851631|ref|YP_007313217.1| - 2.6e-11 42.9 0.1 2.7e-10 39.5 0.1 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|435851631|ref|YP_007313217.1| - 7.2e-10 39.1 0.1 1.5e-09 38.1 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|435851631|ref|YP_007313217.1| - 1.9e-09 37.6 0.0 3.5e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|435851631|ref|YP_007313217.1| - 1.3e-07 31.1 0.2 2.6e-07 30.1 0.1 1.5 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|435851631|ref|YP_007313217.1| - 6.1e-05 22.7 0.0 0.00014 21.6 0.0 1.6 2 0 0 2 2 2 1 KR domain ApbA PF02558.11 gi|435851631|ref|YP_007313217.1| - 0.0013 18.1 0.0 0.0024 17.3 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|435851631|ref|YP_007313217.1| - 0.0043 17.4 0.1 0.012 15.9 0.0 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|435851631|ref|YP_007313217.1| - 0.0066 16.4 0.2 0.017 15.1 0.1 1.7 1 1 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.13 gi|435851631|ref|YP_007313217.1| - 0.0076 15.9 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|435851631|ref|YP_007313217.1| - 0.0083 15.5 0.5 0.025 13.9 0.1 1.9 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.15 gi|435851631|ref|YP_007313217.1| - 0.012 15.4 0.2 0.024 14.5 0.2 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Pyr_redox PF00070.22 gi|435851631|ref|YP_007313217.1| - 0.026 14.9 0.2 0.092 13.1 0.1 2.0 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|435851631|ref|YP_007313217.1| - 0.043 12.7 0.0 0.061 12.2 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_8 PF13450.1 gi|435851631|ref|YP_007313217.1| - 0.07 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|435851631|ref|YP_007313217.1| - 0.08 12.8 0.4 0.34 10.7 0.1 2.0 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.1 gi|435851631|ref|YP_007313217.1| - 0.089 12.5 0.2 0.22 11.2 0.1 1.7 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Epimerase_Csub PF13950.1 gi|435851631|ref|YP_007313217.1| - 0.13 12.2 0.0 0.33 10.9 0.0 1.7 2 0 0 2 2 1 0 UDP-glucose 4-epimerase C-term subunit DAO PF01266.19 gi|435851631|ref|YP_007313217.1| - 0.13 11.1 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Glycos_transf_1 PF00534.15 gi|435851632|ref|YP_007313218.1| - 1.3e-37 128.8 0.0 1.9e-37 128.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|435851632|ref|YP_007313218.1| - 1.8e-20 73.4 0.0 3e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|435851632|ref|YP_007313218.1| - 2.1e-16 60.1 0.0 2.9e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|435851632|ref|YP_007313218.1| - 5.7e-16 59.0 0.0 8.2e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|435851632|ref|YP_007313218.1| - 4.8e-11 42.7 0.0 1.2e-10 41.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|435851632|ref|YP_007313218.1| - 1.8e-07 31.0 0.8 6.5e-07 29.2 0.4 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|435851632|ref|YP_007313218.1| - 0.09 12.2 0.2 0.47 9.8 0.1 1.9 1 1 1 2 2 2 0 Starch synthase catalytic domain DUF3492 PF11997.3 gi|435851632|ref|YP_007313218.1| - 3.8 6.9 5.1 20 4.6 0.6 2.8 1 1 0 2 2 2 0 Domain of unknown function (DUF3492) tRNA_Me_trans PF03054.11 gi|435851633|ref|YP_007313219.1| - 6.8e-05 21.5 0.2 0.00011 20.9 0.1 1.3 1 0 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.9 gi|435851633|ref|YP_007313219.1| - 0.0005 19.5 0.0 0.00096 18.6 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.12 gi|435851633|ref|YP_007313219.1| - 0.0023 16.8 0.0 0.0039 16.1 0.0 1.3 1 0 0 1 1 1 1 NAD synthase TusA PF01206.12 gi|435851633|ref|YP_007313219.1| - 0.019 14.5 0.0 0.12 12.0 0.0 2.3 2 1 0 2 2 2 0 Sulfurtransferase TusA QueC PF06508.8 gi|435851633|ref|YP_007313219.1| - 0.036 13.3 0.0 0.06 12.6 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|435851633|ref|YP_007313219.1| - 0.037 13.5 0.0 0.083 12.3 0.0 1.6 1 0 0 1 1 1 0 PP-loop family PAPS_reduct PF01507.14 gi|435851633|ref|YP_007313219.1| - 0.067 13.0 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family AMP_N PF05195.11 gi|435851633|ref|YP_007313219.1| - 0.12 11.7 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Aminopeptidase P, N-terminal domain THP2 PF09432.5 gi|435851633|ref|YP_007313219.1| - 0.14 12.0 1.8 0.27 11.1 0.3 2.1 2 0 0 2 2 2 0 Tho complex subunit THP2 Glycos_transf_2 PF00535.21 gi|435851634|ref|YP_007313220.1| - 5.2e-21 75.0 0.0 9.2e-21 74.2 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|435851634|ref|YP_007313220.1| - 2.1e-05 24.4 0.0 2.9e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF374 PF04028.8 gi|435851634|ref|YP_007313220.1| - 0.0055 15.9 0.0 0.017 14.3 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF374) Glyco_tranf_2_4 PF13704.1 gi|435851634|ref|YP_007313220.1| - 0.0084 16.4 0.0 0.014 15.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|435851634|ref|YP_007313220.1| - 0.1 11.8 0.0 0.24 10.6 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 21 FtsX PF02687.16 gi|435851634|ref|YP_007313220.1| - 9.7 5.9 10.0 27 4.5 7.0 1.7 1 1 0 1 1 1 0 FtsX-like permease family FIVAR PF07554.8 gi|435851635|ref|YP_007313221.1| - 1.2e-08 34.9 26.8 0.0002 21.4 6.3 3.2 2 0 0 2 2 2 2 Uncharacterised Sugar-binding Domain RE_Eco47II PF09553.5 gi|435851635|ref|YP_007313221.1| - 0.017 14.2 0.2 1 8.4 0.0 2.2 2 0 0 2 2 2 0 Eco47II restriction endonuclease Cob_adeno_trans PF01923.13 gi|435851635|ref|YP_007313221.1| - 0.034 13.9 7.1 1.2 8.9 0.2 2.3 2 0 0 2 2 2 0 Cobalamin adenosyltransferase fn3 PF00041.16 gi|435851635|ref|YP_007313221.1| - 0.041 14.0 12.4 1.2 9.3 1.4 3.9 2 2 0 2 2 2 0 Fibronectin type III domain DUF2863 PF11062.3 gi|435851635|ref|YP_007313221.1| - 0.45 8.5 8.2 1.9 6.4 5.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2863) Apc5 PF12862.2 gi|435851635|ref|YP_007313221.1| - 0.75 9.6 4.2 11 5.9 0.3 2.6 1 1 1 2 2 2 0 Anaphase-promoting complex subunit 5 DUF148 PF02520.12 gi|435851635|ref|YP_007313221.1| - 1.3 8.8 9.8 6.5 6.5 1.3 2.4 1 1 1 2 2 2 0 Domain of unknown function DUF148 HpaB PF03241.8 gi|435851635|ref|YP_007313221.1| - 1.5 7.6 6.4 2 7.1 0.6 3.2 2 1 0 3 3 3 0 4-hydroxyphenylacetate 3-hydroxylase C terminal DUF2937 PF11157.3 gi|435851635|ref|YP_007313221.1| - 1.9 7.8 7.6 2.6 7.3 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) DUF3713 PF12506.3 gi|435851635|ref|YP_007313221.1| - 6.2 6.9 6.5 6.7 6.8 0.7 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3713) OrfB_Zn_ribbon PF07282.6 gi|435851636|ref|YP_007313222.1| - 2.1e-25 88.1 0.6 5.5e-25 86.8 0.4 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|435851636|ref|YP_007313222.1| - 2.4e-16 59.8 0.8 4.8e-16 58.8 0.6 1.5 1 0 0 1 1 1 1 Probable transposase C1_1 PF00130.17 gi|435851636|ref|YP_007313222.1| - 0.00045 19.8 0.6 0.00098 18.8 0.4 1.5 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) TF_Zn_Ribbon PF08271.7 gi|435851636|ref|YP_007313222.1| - 0.0038 16.5 0.0 0.0078 15.5 0.0 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|435851636|ref|YP_007313222.1| - 0.041 13.4 1.3 0.079 12.4 0.9 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|435851636|ref|YP_007313222.1| - 0.07 12.9 1.0 0.14 11.9 0.7 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.6 gi|435851636|ref|YP_007313222.1| - 0.11 12.6 6.3 0.24 11.5 4.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Desulfoferrod_N PF06397.7 gi|435851636|ref|YP_007313222.1| - 0.26 10.7 2.7 7.9 5.9 0.1 2.4 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_2 PF13240.1 gi|435851636|ref|YP_007313222.1| - 1.6 8.2 4.2 6.8 6.3 2.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF457 PF04307.9 gi|435851637|ref|YP_007313223.1| - 2.7e-08 33.2 19.0 6.5e-07 28.8 13.2 2.1 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2304 PF10066.4 gi|435851637|ref|YP_007313223.1| - 0.067 13.0 0.1 0.067 13.0 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) DUF347 PF03988.7 gi|435851637|ref|YP_007313223.1| - 2.8 7.9 10.1 5.3 6.9 0.0 3.3 3 0 0 3 3 3 0 Repeat of Unknown Function (DUF347) DDE_3 PF13358.1 gi|435851638|ref|YP_007313224.1| - 1.7e-19 70.0 0.0 3.7e-19 68.9 0.0 1.5 2 0 0 2 2 2 1 DDE superfamily endonuclease DDE_1 PF03184.14 gi|435851638|ref|YP_007313224.1| - 3.2e-06 26.4 0.1 3.6e-06 26.2 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|435851638|ref|YP_007313224.1| - 0.00037 20.5 0.0 0.00058 19.9 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DUF4635 PF15466.1 gi|435851638|ref|YP_007313224.1| - 0.023 13.9 0.0 0.029 13.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4635) DDE_Tnp_ISAZ013 PF07592.6 gi|435851638|ref|YP_007313224.1| - 0.047 12.4 0.0 0.068 11.9 0.0 1.3 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain HTH_29 PF13551.1 gi|435851639|ref|YP_007313225.1| - 2.1e-14 53.6 0.0 3.3e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|435851639|ref|YP_007313225.1| - 4.9e-09 36.8 0.3 1.6e-08 35.2 0.1 2.0 1 1 1 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|435851639|ref|YP_007313225.1| - 3.4e-08 33.3 0.0 7.9e-08 32.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|435851639|ref|YP_007313225.1| - 9.5e-08 31.4 0.2 4.7e-07 29.2 0.0 2.1 3 0 0 3 3 3 1 Homeodomain-like domain HTH_33 PF13592.1 gi|435851639|ref|YP_007313225.1| - 1.2e-06 27.9 0.0 2.6e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix LZ_Tnp_IS481 PF13011.1 gi|435851639|ref|YP_007313225.1| - 0.00063 20.0 0.0 0.00094 19.4 0.0 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 DUF3650 PF12368.3 gi|435851639|ref|YP_007313225.1| - 2.5 7.6 4.7 0.38 10.2 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3650) DUF457 PF04307.9 gi|435851640|ref|YP_007313226.1| - 5.2e-12 45.3 13.2 7.2e-12 44.9 9.1 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2231 PF09990.4 gi|435851640|ref|YP_007313226.1| - 0.4 11.0 10.3 0.15 12.4 0.9 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) DUF2069 PF09842.4 gi|435851641|ref|YP_007313227.1| - 0.04 13.8 0.4 0.062 13.2 0.2 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2069) Transport_MerF PF11431.3 gi|435851641|ref|YP_007313227.1| - 0.075 12.6 1.2 0.25 11.0 0.0 2.2 2 0 0 2 2 2 0 Membrane transport protein MerF Polysacc_synt PF01943.12 gi|435851643|ref|YP_007313229.1| - 9.1e-11 41.5 32.5 9.1e-11 41.5 22.5 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|435851643|ref|YP_007313229.1| - 7.7e-07 28.8 31.1 7.7e-07 28.8 21.6 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|435851643|ref|YP_007313229.1| - 0.0033 17.2 4.1 0.0033 17.2 2.8 4.2 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Exosortase_EpsH PF09721.5 gi|435851644|ref|YP_007313230.1| - 2.9e-10 39.8 27.9 3.7e-10 39.4 19.3 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Cytochrom_B_N PF00033.14 gi|435851644|ref|YP_007313230.1| - 0.89 8.8 20.8 0.041 13.2 1.2 3.0 2 1 1 3 3 3 0 Cytochrome b(N-terminal)/b6/petB DUF2259 PF10016.4 gi|435851645|ref|YP_007313231.1| - 0.11 12.2 0.0 0.13 11.9 0.0 1.0 1 0 0 1 1 1 0 Predicted secreted protein (DUF2259) Abi PF02517.11 gi|435851648|ref|YP_007313234.1| - 1.4e-19 70.0 4.0 1.4e-19 70.0 2.8 2.9 2 1 0 2 2 2 1 CAAX protease self-immunity Glycos_transf_1 PF00534.15 gi|435851649|ref|YP_007313235.1| - 8.2e-39 132.7 0.0 1.2e-38 132.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|435851649|ref|YP_007313235.1| - 1.6e-18 67.1 0.1 2.6e-18 66.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|435851649|ref|YP_007313235.1| - 1.7e-12 47.3 0.0 3.1e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|435851649|ref|YP_007313235.1| - 8.8e-08 32.0 0.0 2.4e-07 30.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|435851649|ref|YP_007313235.1| - 5.3e-06 26.6 0.0 1.4e-05 25.3 0.0 1.7 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain NIR_SIR PF01077.17 gi|435851651|ref|YP_007313237.1| - 5.4e-35 120.0 0.0 9e-35 119.3 0.0 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|435851651|ref|YP_007313237.1| - 7.8e-17 60.6 0.0 1.4e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain GcpE PF04551.9 gi|435851651|ref|YP_007313237.1| - 0.015 14.1 0.1 0.023 13.5 0.1 1.4 1 0 0 1 1 1 0 GcpE protein PMBR PF09373.5 gi|435851651|ref|YP_007313237.1| - 0.031 14.2 0.1 0.074 13.0 0.0 1.6 1 0 0 1 1 1 0 Pseudomurein-binding repeat Nitrate_red_gam PF02665.9 gi|435851652|ref|YP_007313238.1| - 6.9e-05 22.3 17.8 8.9e-05 21.9 1.2 3.1 1 1 2 3 3 3 2 Nitrate reductase gamma subunit CCG PF02754.11 gi|435851653|ref|YP_007313239.1| - 5.8e-34 115.9 7.1 2.5e-17 62.6 0.0 2.8 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|435851653|ref|YP_007313239.1| - 1.1e-09 38.1 3.0 1.1e-09 38.1 2.1 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435851653|ref|YP_007313239.1| - 4.1e-07 30.2 4.9 4.1e-07 30.2 3.4 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435851653|ref|YP_007313239.1| - 4.4e-07 30.1 4.1 4.4e-07 30.1 2.8 2.9 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435851653|ref|YP_007313239.1| - 3.7e-06 26.6 8.5 3.7e-06 26.6 5.9 2.9 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|435851653|ref|YP_007313239.1| - 4.7e-06 26.9 7.4 0.02 15.2 0.3 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435851653|ref|YP_007313239.1| - 7.3e-05 22.9 15.1 0.014 15.6 0.5 3.8 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435851653|ref|YP_007313239.1| - 0.00073 19.3 7.6 0.27 11.0 0.3 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851653|ref|YP_007313239.1| - 0.058 13.3 19.1 0.2 11.6 1.7 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435851653|ref|YP_007313239.1| - 0.085 13.6 15.4 0.092 13.5 7.6 3.0 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|435851653|ref|YP_007313239.1| - 0.22 12.1 5.9 6.9 7.3 0.3 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF4001 PF13165.1 gi|435851653|ref|YP_007313239.1| - 0.29 10.8 5.4 0.51 10.0 0.2 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4001) DUF116 PF01976.12 gi|435851654|ref|YP_007313240.1| - 3.8e-47 159.6 2.8 4.6e-47 159.4 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 DUF116 PF01976.12 gi|435851655|ref|YP_007313241.1| - 2.2e-40 137.7 0.0 2.6e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF116 Mtr2 PF10429.4 gi|435851655|ref|YP_007313241.1| - 0.072 12.8 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Nuclear pore RNA shuttling protein Mtr2 Fer4_6 PF12837.2 gi|435851655|ref|YP_007313241.1| - 3.8 7.5 7.0 1.4 8.8 1.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF3458 PF11940.3 gi|435851656|ref|YP_007313242.1| - 1.7e-62 211.3 2.4 1.7e-62 211.3 1.7 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3458) Peptidase_M1 PF01433.15 gi|435851656|ref|YP_007313242.1| - 1.6e-29 103.2 0.1 1.3e-16 60.7 0.0 2.2 1 1 0 2 2 2 2 Peptidase family M1 Peptidase_MA_2 PF13485.1 gi|435851656|ref|YP_007313242.1| - 7.3e-14 51.9 0.1 1.9e-13 50.5 0.0 1.8 1 0 0 1 1 1 1 Peptidase MA superfamily Acetyltransf_7 PF13508.1 gi|435851657|ref|YP_007313243.1| - 2.3e-11 43.6 0.1 2e-08 34.2 0.0 2.6 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|435851657|ref|YP_007313243.1| - 6.6e-11 42.0 0.0 4.9e-08 32.8 0.0 2.6 2 1 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|435851657|ref|YP_007313243.1| - 5.3e-05 23.1 0.0 0.00015 21.6 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|435851657|ref|YP_007313243.1| - 0.00038 20.5 0.0 0.0043 17.1 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|435851657|ref|YP_007313243.1| - 0.014 15.3 0.0 0.057 13.3 0.0 2.1 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|435851657|ref|YP_007313243.1| - 0.014 15.3 0.1 2.2 8.2 0.0 2.5 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|435851657|ref|YP_007313243.1| - 0.075 12.8 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_3 PF13302.1 gi|435851657|ref|YP_007313243.1| - 0.099 12.8 0.1 0.38 10.8 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Cyt-b5 PF00173.23 gi|435851658|ref|YP_007313244.1| - 3.8e-10 39.4 0.1 4.4e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Cytochrome b5-like Heme/Steroid binding domain ABC_tran PF00005.22 gi|435851659|ref|YP_007313245.1| - 6.9e-20 71.7 0.0 1.2e-19 70.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435851659|ref|YP_007313245.1| - 3.5e-08 33.7 0.5 0.00021 21.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|435851659|ref|YP_007313245.1| - 0.014 15.7 0.4 0.026 14.8 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|435851659|ref|YP_007313245.1| - 0.017 14.6 0.1 0.039 13.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|435851659|ref|YP_007313245.1| - 0.021 13.3 0.1 0.032 12.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|435851659|ref|YP_007313245.1| - 0.032 13.4 0.0 0.16 11.1 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 LSM14 PF12701.2 gi|435851659|ref|YP_007313245.1| - 0.058 13.2 0.0 0.49 10.2 0.0 2.3 1 1 1 2 2 2 0 Scd6-like Sm domain SMC_N PF02463.14 gi|435851659|ref|YP_007313245.1| - 0.13 11.5 2.3 0.14 11.3 0.3 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Adeno_IVa2 PF02456.10 gi|435851659|ref|YP_007313245.1| - 0.14 10.7 0.0 0.2 10.2 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein UPF0051 PF01458.12 gi|435851660|ref|YP_007313246.1| - 1.1e-53 182.1 0.1 1.7e-53 181.4 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Ribosomal_L7Ae PF01248.21 gi|435851662|ref|YP_007313248.1| - 8.5e-27 92.5 1.6 9.7e-27 92.3 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_3 PF03465.10 gi|435851662|ref|YP_007313248.1| - 0.01 16.0 0.2 0.014 15.6 0.2 1.2 1 1 0 1 1 1 0 eRF1 domain 3 RNase_P_pop3 PF08228.6 gi|435851662|ref|YP_007313248.1| - 0.083 12.7 0.0 0.085 12.6 0.0 1.2 1 0 0 1 1 1 0 RNase P subunit Pop3 Ribosomal_S28e PF01200.13 gi|435851663|ref|YP_007313249.1| - 2.7e-27 94.2 0.3 2.9e-27 94.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|435851664|ref|YP_007313250.1| - 2.3e-22 78.5 0.4 2.4e-22 78.5 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|435851664|ref|YP_007313250.1| - 1.3e-05 24.7 3.7 1.7e-05 24.3 2.6 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|435851664|ref|YP_007313250.1| - 0.00042 20.0 1.7 0.0006 19.6 1.2 1.3 1 0 0 1 1 1 1 YHS domain Ta0938 PF11494.3 gi|435851664|ref|YP_007313250.1| - 0.01 15.9 0.1 0.011 15.8 0.1 1.1 1 0 0 1 1 1 0 Ta0938 SerH PF06873.6 gi|435851664|ref|YP_007313250.1| - 0.026 13.1 0.0 0.026 13.1 0.0 1.0 1 0 0 1 1 1 0 Cell surface immobilisation antigen SerH C1_3 PF07649.7 gi|435851664|ref|YP_007313250.1| - 0.1 12.6 2.0 3.3 7.8 0.1 2.2 2 0 0 2 2 2 0 C1-like domain Peptidase_M49 PF03571.10 gi|435851664|ref|YP_007313250.1| - 0.15 10.1 0.0 0.17 9.9 0.0 1.0 1 0 0 1 1 1 0 Peptidase family M49 zf-C4_ClpX PF06689.8 gi|435851664|ref|YP_007313250.1| - 0.16 11.4 2.8 0.26 10.8 1.9 1.5 1 1 0 1 1 1 0 ClpX C4-type zinc finger DUF581 PF04570.9 gi|435851664|ref|YP_007313250.1| - 0.77 9.0 3.5 2.3 7.5 2.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF581) NDK PF00334.14 gi|435851665|ref|YP_007313251.1| - 6.1e-55 184.6 0.1 6.9e-55 184.5 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase DUF2173 PF09941.4 gi|435851665|ref|YP_007313251.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) GTP_EFTU PF00009.22 gi|435851666|ref|YP_007313252.1| - 1.7e-32 112.3 0.7 1.8e-31 109.0 0.1 2.5 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|435851666|ref|YP_007313252.1| - 6.4e-23 80.7 6.0 6.4e-23 80.7 4.1 2.3 3 0 0 3 3 3 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|435851666|ref|YP_007313252.1| - 1.2e-10 41.3 10.1 2.7e-07 30.6 0.0 3.4 3 1 0 3 3 3 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|435851666|ref|YP_007313252.1| - 5.1e-10 38.8 2.3 5.1e-10 38.8 1.6 2.6 3 0 0 3 3 3 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|435851666|ref|YP_007313252.1| - 5.1e-07 29.6 0.4 2e-06 27.7 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase Miro PF08477.8 gi|435851666|ref|YP_007313252.1| - 0.00013 22.4 0.0 0.0011 19.4 0.0 2.4 2 0 0 2 2 2 1 Miro-like protein PduV-EutP PF10662.4 gi|435851666|ref|YP_007313252.1| - 0.0053 16.2 0.2 0.3 10.5 0.0 2.9 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|435851666|ref|YP_007313252.1| - 0.0093 15.5 0.0 0.04 13.4 0.0 2.1 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|435851666|ref|YP_007313252.1| - 0.024 14.4 0.6 1.3 8.8 0.0 3.0 3 0 0 3 3 3 0 Dynamin family Ribosomal_S6e PF01092.14 gi|435851667|ref|YP_007313253.1| - 2.1e-34 117.9 1.0 2.4e-34 117.7 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e APH PF01636.18 gi|435851668|ref|YP_007313254.1| - 9e-10 38.6 0.0 1.3e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family HAD_2 PF13419.1 gi|435851669|ref|YP_007313255.1| - 1e-28 100.7 0.1 1.3e-28 100.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|435851669|ref|YP_007313255.1| - 4.9e-11 43.4 0.0 6e-10 39.8 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|435851669|ref|YP_007313255.1| - 9.7e-06 25.2 0.0 1.6e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Nitroreductase PF00881.19 gi|435851670|ref|YP_007313256.1| - 2.3e-31 108.8 0.0 3.2e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Fer4 PF00037.22 gi|435851670|ref|YP_007313256.1| - 9.6e-12 43.9 14.9 1.3e-06 27.7 2.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435851670|ref|YP_007313256.1| - 5.2e-09 36.2 12.7 1.1e-08 35.1 8.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435851670|ref|YP_007313256.1| - 6.3e-09 36.0 33.8 1.2e-05 25.5 9.7 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851670|ref|YP_007313256.1| - 2e-08 34.8 3.1 0.0019 18.8 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|435851670|ref|YP_007313256.1| - 2e-08 34.1 9.7 3.9e-08 33.2 6.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435851670|ref|YP_007313256.1| - 5.3e-08 32.3 15.4 9.5e-05 22.1 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435851670|ref|YP_007313256.1| - 1.2e-07 31.2 13.3 0.00012 21.8 2.0 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435851670|ref|YP_007313256.1| - 2.2e-07 30.6 8.7 0.0026 17.9 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435851670|ref|YP_007313256.1| - 9.9e-07 28.4 12.5 4.3e-06 26.4 9.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|435851670|ref|YP_007313256.1| - 1.7e-05 25.1 11.8 0.0064 16.8 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435851670|ref|YP_007313256.1| - 4.1e-05 23.8 11.3 0.0023 18.2 7.8 2.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435851670|ref|YP_007313256.1| - 0.0018 18.1 12.7 0.02 14.7 8.8 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435851670|ref|YP_007313256.1| - 0.0065 16.9 17.2 0.38 11.4 2.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435851670|ref|YP_007313256.1| - 0.015 15.6 10.4 0.091 13.1 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|435851670|ref|YP_007313256.1| - 0.23 12.0 9.1 0.43 11.1 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Spore_coat_CotO PF14153.1 gi|435851671|ref|YP_007313257.1| - 0.014 14.8 0.3 0.014 14.8 0.2 1.1 1 0 0 1 1 1 0 Spore coat protein CotO MoaE PF02391.12 gi|435851671|ref|YP_007313257.1| - 0.04 13.7 0.1 0.04 13.7 0.0 1.0 1 0 0 1 1 1 0 MoaE protein Adenine_deam_C PF13382.1 gi|435851672|ref|YP_007313258.1| - 7.5e-59 197.7 0.0 2e-58 196.3 0.0 1.8 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|435851672|ref|YP_007313258.1| - 7.8e-30 104.6 0.2 7.1e-29 101.5 0.2 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|435851672|ref|YP_007313258.1| - 8.5e-08 31.9 0.0 2.4e-07 30.4 0.0 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|435851672|ref|YP_007313258.1| - 0.00049 20.2 0.1 0.076 13.0 0.0 2.9 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|435851672|ref|YP_007313258.1| - 0.047 12.8 0.1 0.3 10.2 0.1 2.1 2 0 0 2 2 2 0 Amidohydrolase family VPS11_C PF12451.3 gi|435851672|ref|YP_007313258.1| - 0.072 12.9 0.4 12 5.9 0.1 2.8 2 0 0 2 2 2 0 Vacuolar protein sorting protein 11 C terminal Disaggr_repeat PF06848.6 gi|435851673|ref|YP_007313259.1| - 5.3e-233 765.7 23.4 1.2e-78 262.7 1.6 3.7 3 0 0 3 3 3 3 Disaggregatase related repeat Disaggr_assoc PF08480.5 gi|435851673|ref|YP_007313259.1| - 2e-43 148.1 19.9 2e-43 148.1 13.8 2.4 2 1 1 3 3 3 1 Disaggregatase related PKD PF00801.15 gi|435851673|ref|YP_007313259.1| - 2.4e-38 129.7 46.9 5.6e-15 54.8 5.3 5.2 5 0 0 5 5 5 3 PKD domain TGFb_propeptide PF00688.13 gi|435851673|ref|YP_007313259.1| - 4.4e-15 55.6 0.0 0.078 12.2 0.0 6.1 6 0 0 6 6 6 5 TGF-beta propeptide Beta_helix PF13229.1 gi|435851673|ref|YP_007313259.1| - 3.1e-11 43.2 38.5 4e-09 36.4 12.9 4.5 2 1 2 4 4 4 3 Right handed beta helix region Y_Y_Y PF07495.8 gi|435851673|ref|YP_007313259.1| - 1.9e-08 33.9 1.2 0.0053 16.4 0.0 4.0 3 0 0 3 3 3 2 Y_Y_Y domain DUF4625 PF15418.1 gi|435851673|ref|YP_007313259.1| - 6.2e-05 23.1 0.4 3.2 7.8 0.0 3.8 3 0 0 3 3 3 2 Domain of unknown function (DUF4625) DUF4380 PF14315.1 gi|435851673|ref|YP_007313259.1| - 0.0042 16.2 0.2 0.12 11.5 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4380) He_PIG PF05345.7 gi|435851673|ref|YP_007313259.1| - 0.014 15.4 30.0 1.2 9.2 4.6 5.0 3 0 0 3 3 3 0 Putative Ig domain Big_3_4 PF13754.1 gi|435851673|ref|YP_007313259.1| - 0.19 12.0 55.8 0.018 15.3 5.7 5.7 5 1 0 5 5 4 0 Bacterial Ig-like domain (group 3) Hemopexin PF00045.14 gi|435851673|ref|YP_007313259.1| - 0.88 9.3 4.9 7.9 6.2 0.0 3.5 3 0 0 3 3 3 0 Hemopexin MCH PF02289.11 gi|435851674|ref|YP_007313260.1| - 2.4e-150 499.8 0.3 2.7e-150 499.6 0.2 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Met_10 PF02475.11 gi|435851675|ref|YP_007313261.1| - 1.2e-64 217.5 0.0 1.8e-64 217.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|435851675|ref|YP_007313261.1| - 0.0001 21.9 0.0 0.00018 21.1 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|435851675|ref|YP_007313261.1| - 0.00073 20.1 0.0 0.0013 19.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435851675|ref|YP_007313261.1| - 0.0012 18.8 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435851675|ref|YP_007313261.1| - 0.0013 18.0 0.0 0.0032 16.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.8 gi|435851675|ref|YP_007313261.1| - 0.01 14.9 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_21 PF05050.7 gi|435851675|ref|YP_007313261.1| - 0.027 14.3 0.0 0.047 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.6 gi|435851675|ref|YP_007313261.1| - 0.086 11.8 0.0 0.26 10.3 0.0 1.7 2 0 0 2 2 2 0 Vibrio cholerae RfbT protein HTH_5 PF01022.15 gi|435851676|ref|YP_007313262.1| - 1.1e-09 37.7 0.2 3.7e-09 36.1 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family V4R PF02830.13 gi|435851676|ref|YP_007313262.1| - 2.3e-09 36.9 4.2 4.6e-09 35.9 2.9 1.5 1 0 0 1 1 1 1 V4R domain MarR_2 PF12802.2 gi|435851676|ref|YP_007313262.1| - 1.2e-05 24.8 0.0 2.1e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|435851676|ref|YP_007313262.1| - 6e-05 22.7 0.0 0.00013 21.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|435851676|ref|YP_007313262.1| - 0.002 17.6 0.0 0.0036 16.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|435851676|ref|YP_007313262.1| - 0.0059 16.5 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_38 PF13936.1 gi|435851676|ref|YP_007313262.1| - 0.012 15.1 0.0 0.12 11.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|435851676|ref|YP_007313262.1| - 0.026 14.4 0.1 0.045 13.6 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) XLF PF09302.6 gi|435851676|ref|YP_007313262.1| - 0.036 13.8 0.0 0.055 13.2 0.0 1.2 1 0 0 1 1 1 0 XLF (XRCC4-like factor) TrmB PF01978.14 gi|435851676|ref|YP_007313262.1| - 0.062 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2110 PF09883.4 gi|435851677|ref|YP_007313263.1| - 2.7e-70 236.5 0.8 3.1e-70 236.3 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) S1 PF00575.18 gi|435851677|ref|YP_007313263.1| - 0.0035 17.4 0.3 0.0071 16.4 0.2 1.5 1 0 0 1 1 1 1 S1 RNA binding domain HTH_27 PF13463.1 gi|435851678|ref|YP_007313264.1| - 0.00054 20.2 0.0 0.0012 19.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|435851678|ref|YP_007313264.1| - 0.0052 16.5 0.4 0.011 15.5 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix GerPC PF10737.4 gi|435851678|ref|YP_007313264.1| - 0.03 14.1 0.2 0.067 12.9 0.1 1.6 1 0 0 1 1 1 0 Spore germination protein GerPC DUF4364 PF14277.1 gi|435851678|ref|YP_007313264.1| - 0.035 13.7 1.3 0.072 12.6 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) DUF2250 PF10007.4 gi|435851678|ref|YP_007313264.1| - 0.048 13.5 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|435851678|ref|YP_007313264.1| - 0.091 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family TRM PF02005.11 gi|435851679|ref|YP_007313265.1| - 2.7e-110 368.8 0.0 3.3e-110 368.5 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|435851679|ref|YP_007313265.1| - 0.095 12.2 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|435851679|ref|YP_007313265.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Lipase_bact_N PF12262.3 gi|435851680|ref|YP_007313266.1| - 0.0035 16.5 0.3 0.007 15.6 0.1 1.5 1 1 1 2 2 2 1 Bacterial virulence factor lipase N-terminal Cupredoxin_1 PF13473.1 gi|435851680|ref|YP_007313266.1| - 0.099 12.5 0.0 0.22 11.4 0.0 1.6 1 1 0 1 1 1 0 Cupredoxin-like domain Lysis_col PF02402.11 gi|435851680|ref|YP_007313266.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Lysis protein Metallophos_2 PF12850.2 gi|435851681|ref|YP_007313267.1| - 2.4e-19 69.6 0.0 3.6e-19 69.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|435851681|ref|YP_007313267.1| - 1.1e-14 54.2 1.8 6e-14 51.9 1.2 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|435851681|ref|YP_007313267.1| - 2.9e-06 26.6 1.0 0.0016 17.6 0.0 3.0 2 1 1 3 3 3 2 Metallophosphoesterase, calcineurin superfamily DrsE PF02635.10 gi|435851681|ref|YP_007313267.1| - 0.022 14.8 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 DsrE/DsrF-like family AIM24 PF01987.12 gi|435851682|ref|YP_007313268.1| - 4.3e-68 228.9 0.4 5.2e-68 228.7 0.3 1.1 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 zf-like PF04071.7 gi|435851683|ref|YP_007313269.1| - 2.1e-28 97.8 4.6 4.4e-28 96.8 3.2 1.5 1 0 0 1 1 1 1 Cysteine-rich small domain Aminotran_1_2 PF00155.16 gi|435851683|ref|YP_007313269.1| - 2.2e-27 95.9 0.0 3.2e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_1_2 PF00155.16 gi|435851684|ref|YP_007313270.1| - 1.5e-43 149.1 0.0 1.9e-43 148.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.7 gi|435851684|ref|YP_007313270.1| - 3.1e-29 100.4 5.6 3.1e-29 100.4 3.9 1.8 2 0 0 2 2 2 1 Cysteine-rich small domain VacA PF02691.10 gi|435851684|ref|YP_007313270.1| - 0.11 10.1 0.0 0.15 9.6 0.0 1.1 1 0 0 1 1 1 0 Vacuolating cyotoxin CobD_Cbib PF03186.8 gi|435851685|ref|YP_007313271.1| - 2.8e-97 325.3 0.2 3.5e-97 325.0 0.1 1.1 1 0 0 1 1 1 1 CobD/Cbib protein PgpA PF04608.8 gi|435851686|ref|YP_007313272.1| - 1e-08 35.0 0.0 1.4e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.10 gi|435851687|ref|YP_007313273.1| - 9.4e-45 153.0 20.3 1.2e-43 149.4 14.1 1.9 1 1 0 1 1 1 1 Cobalamin-5-phosphate synthase TcpE PF12648.2 gi|435851687|ref|YP_007313273.1| - 0.68 10.1 7.2 2.1 8.5 0.0 2.9 2 1 0 3 3 3 0 TcpE family Flp_Fap PF04964.9 gi|435851687|ref|YP_007313273.1| - 4.2 7.0 6.8 2.3 7.8 0.3 3.4 3 0 0 3 3 3 0 Flp/Fap pilin component DUF1469 PF07332.6 gi|435851687|ref|YP_007313273.1| - 6.1 6.6 22.4 0.71 9.6 3.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1469) NTP_transf_3 PF12804.2 gi|435851688|ref|YP_007313274.1| - 2.3e-15 57.0 0.0 3.1e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|435851688|ref|YP_007313274.1| - 1.2e-07 31.5 0.0 2.4e-07 30.4 0.0 1.5 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|435851688|ref|YP_007313274.1| - 2e-06 27.6 0.0 1.1e-05 25.1 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|435851688|ref|YP_007313274.1| - 0.0003 20.1 0.0 0.00041 19.7 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.11 gi|435851688|ref|YP_007313274.1| - 0.0072 15.3 0.0 0.011 14.6 0.0 1.4 1 0 0 1 1 1 1 Guanylyl transferase CofC like tRNA-synt_1 PF00133.17 gi|435851690|ref|YP_007313276.1| - 1.9e-203 676.7 1.4 2.5e-203 676.3 1.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|435851690|ref|YP_007313276.1| - 2.5e-37 127.9 0.2 6e-37 126.7 0.1 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|435851690|ref|YP_007313276.1| - 4.8e-27 94.6 4.7 4.6e-12 45.2 0.1 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|435851690|ref|YP_007313276.1| - 1.1e-07 31.2 0.0 5e-07 29.1 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|435851690|ref|YP_007313276.1| - 0.00051 19.3 0.0 0.0056 16.0 0.0 2.8 2 1 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|435851690|ref|YP_007313276.1| - 0.009 14.7 0.0 0.026 13.2 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetases class I (K) MAF_flag10 PF01973.13 gi|435851691|ref|YP_007313277.1| - 1.1e-29 103.1 0.0 1.3e-29 102.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|435851691|ref|YP_007313277.1| - 0.047 13.2 0.7 0.4 10.2 0.2 2.1 1 1 0 2 2 2 0 Thiamin pyrophosphokinase, catalytic domain DUF373 PF04123.8 gi|435851692|ref|YP_007313278.1| - 1.7e-113 379.1 9.5 1.9e-113 379.0 6.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) PNP_UDP_1 PF01048.15 gi|435851693|ref|YP_007313279.1| - 7e-40 136.4 0.1 7.8e-40 136.3 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DEAD PF00270.24 gi|435851694|ref|YP_007313280.1| - 1.8e-24 86.1 0.1 7e-24 84.2 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|435851694|ref|YP_007313280.1| - 1.8e-12 46.9 0.0 4.8e-12 45.5 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|435851694|ref|YP_007313280.1| - 6.7e-05 22.7 0.0 0.00015 21.6 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|435851694|ref|YP_007313280.1| - 0.025 13.3 0.0 0.04 12.7 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_34 PF13872.1 gi|435851694|ref|YP_007313280.1| - 0.094 11.4 0.0 0.18 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 DsbD PF02683.10 gi|435851695|ref|YP_007313281.1| - 6.2e-21 74.9 19.2 6.2e-21 74.9 13.3 1.5 2 0 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|435851695|ref|YP_007313281.1| - 3.6e-10 39.9 17.1 5.9e-10 39.2 11.6 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|435851695|ref|YP_007313281.1| - 7.3e-08 32.1 0.1 1.3e-07 31.2 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.15 gi|435851695|ref|YP_007313281.1| - 0.00032 20.3 0.0 0.00053 19.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.1 gi|435851695|ref|YP_007313281.1| - 0.028 13.9 0.0 0.24 10.8 0.0 2.0 1 1 1 2 2 2 0 F plasmid transfer operon protein DUF2910 PF11139.3 gi|435851695|ref|YP_007313281.1| - 0.094 11.8 18.3 0.024 13.7 3.2 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2910) Thioredoxin_2 PF13098.1 gi|435851695|ref|YP_007313281.1| - 0.13 12.4 0.1 0.55 10.4 0.1 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain DUF3995 PF13160.1 gi|435851695|ref|YP_007313281.1| - 1.1 9.3 6.2 0.23 11.5 0.2 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF3995) Abhydrolase_9_N PF15420.1 gi|435851695|ref|YP_007313281.1| - 4.2 7.0 6.8 11 5.6 1.0 3.0 3 1 0 3 3 3 0 Alpha/beta-hydrolase family N-terminus FtsL PF04999.8 gi|435851695|ref|YP_007313281.1| - 4.8 6.9 6.3 6.3 6.5 0.3 2.8 3 0 0 3 3 3 0 Cell division protein FtsL TarH PF02203.10 gi|435851696|ref|YP_007313282.1| - 0.034 13.9 1.3 0.048 13.5 0.6 1.4 2 0 0 2 2 2 0 Tar ligand binding domain homologue Jiraiya PF15038.1 gi|435851696|ref|YP_007313282.1| - 0.039 13.3 0.1 0.06 12.7 0.1 1.2 1 0 0 1 1 1 0 Jiraiya DUF1726 PF08351.6 gi|435851696|ref|YP_007313282.1| - 0.08 12.6 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1726) DUF3172 PF11371.3 gi|435851696|ref|YP_007313282.1| - 0.1 12.1 0.1 0.17 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3172) DUF3467 PF11950.3 gi|435851697|ref|YP_007313283.1| - 9.5e-15 54.3 0.0 1.4e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) LSM PF01423.17 gi|435851698|ref|YP_007313284.1| - 2.7e-15 55.6 0.5 3.1e-15 55.4 0.4 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|435851698|ref|YP_007313284.1| - 0.024 14.5 0.0 0.032 14.1 0.0 1.3 1 1 0 1 1 1 0 Ataxin 2 SM domain B-block_TFIIIC PF04182.7 gi|435851699|ref|YP_007313285.1| - 2.4e-05 24.1 0.0 3.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|435851699|ref|YP_007313285.1| - 0.0088 15.7 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|435851699|ref|YP_007313285.1| - 0.055 13.1 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 MarR family MFS_1 PF07690.11 gi|435851700|ref|YP_007313286.1| - 3.8e-45 154.1 64.4 2.8e-30 105.2 23.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|435851700|ref|YP_007313286.1| - 3.6e-09 35.7 44.2 1.2e-08 33.9 12.9 3.3 1 1 1 3 3 3 3 Sugar (and other) transporter MFS_3 PF05977.8 gi|435851700|ref|YP_007313286.1| - 9.7e-05 20.6 10.1 0.00014 20.1 7.0 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector DUF1514 PF07438.6 gi|435851700|ref|YP_007313286.1| - 3.9 7.4 6.0 1.7 8.6 0.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1514) MarR PF01047.17 gi|435851701|ref|YP_007313287.1| - 1.2e-13 50.5 0.0 1.9e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|435851701|ref|YP_007313287.1| - 7.4e-10 39.0 0.0 1.1e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|435851701|ref|YP_007313287.1| - 2.1e-09 36.9 0.0 2.9e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|435851701|ref|YP_007313287.1| - 2.9e-05 24.0 0.6 5.1e-05 23.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|435851701|ref|YP_007313287.1| - 5.3e-05 22.5 0.0 0.0001 21.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RPA_C PF08784.6 gi|435851701|ref|YP_007313287.1| - 6e-05 23.4 0.0 9.5e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal B-block_TFIIIC PF04182.7 gi|435851701|ref|YP_007313287.1| - 0.00017 21.3 0.1 0.00027 20.7 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.14 gi|435851701|ref|YP_007313287.1| - 0.00081 19.2 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|435851701|ref|YP_007313287.1| - 0.0023 17.5 0.1 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|435851701|ref|YP_007313287.1| - 0.0037 17.0 0.0 0.0063 16.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain STN1_2 PF09170.5 gi|435851701|ref|YP_007313287.1| - 0.011 15.5 0.3 0.017 14.9 0.2 1.3 1 0 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 HTH_36 PF13730.1 gi|435851701|ref|YP_007313287.1| - 0.018 15.1 0.1 0.028 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|435851701|ref|YP_007313287.1| - 0.055 13.3 1.4 0.058 13.2 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_11 PF08279.7 gi|435851701|ref|YP_007313287.1| - 0.073 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain PadR PF03551.9 gi|435851701|ref|YP_007313287.1| - 0.074 12.8 0.1 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Mga PF05043.8 gi|435851701|ref|YP_007313287.1| - 0.088 13.0 0.1 0.16 12.2 0.1 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain Mur_ligase_C PF02875.16 gi|435851701|ref|YP_007313287.1| - 0.11 12.5 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain HTH_IclR PF09339.5 gi|435851701|ref|YP_007313287.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|435851701|ref|YP_007313287.1| - 0.12 12.0 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HEAT_2 PF13646.1 gi|435851702|ref|YP_007313288.1| - 4.6e-12 46.0 0.2 0.0029 17.8 0.0 4.4 1 1 4 5 5 5 5 HEAT repeats HEAT PF02985.17 gi|435851702|ref|YP_007313288.1| - 5.3e-07 29.1 0.9 0.29 11.3 0.0 5.4 6 0 0 6 6 6 2 HEAT repeat HEAT_EZ PF13513.1 gi|435851702|ref|YP_007313288.1| - 1.1e-06 28.9 0.2 2.8 8.5 0.0 4.9 5 1 1 6 6 6 3 HEAT-like repeat Adaptin_N PF01602.15 gi|435851702|ref|YP_007313288.1| - 3.2e-05 22.4 1.0 0.96 7.6 0.0 3.5 2 2 2 4 4 4 3 Adaptin N terminal region CLASP_N PF12348.3 gi|435851702|ref|YP_007313288.1| - 0.0011 18.3 0.8 0.55 9.5 0.1 3.2 3 0 0 3 3 3 2 CLASP N terminal Vac14_Fab1_bd PF12755.2 gi|435851702|ref|YP_007313288.1| - 0.0057 17.0 0.7 8.3 6.8 0.0 3.9 4 0 0 4 4 4 1 Vacuolar 14 Fab1-binding region Sec16_C PF12931.2 gi|435851702|ref|YP_007313288.1| - 0.062 13.0 0.1 0.1 12.3 0.1 1.3 1 0 0 1 1 1 0 Sec23-binding domain of Sec16 Cytochrom_C_asm PF01578.15 gi|435851703|ref|YP_007313289.1| - 3.9e-27 95.2 15.6 3.9e-27 95.2 10.8 2.0 2 0 0 2 2 2 1 Cytochrome C assembly protein YesK PF14150.1 gi|435851703|ref|YP_007313289.1| - 0.019 15.0 0.2 0.019 15.0 0.1 3.6 4 1 0 4 4 4 0 YesK-like protein CcmB PF03379.8 gi|435851704|ref|YP_007313290.1| - 8.9e-33 113.3 18.3 9.9e-33 113.1 12.7 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.19 gi|435851704|ref|YP_007313290.1| - 4.7e-13 48.7 10.8 8e-13 48.0 7.5 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|435851704|ref|YP_007313290.1| - 4.8e-08 32.4 16.2 8.3e-08 31.6 10.8 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|435851705|ref|YP_007313291.1| - 2.9e-32 111.8 0.0 4.4e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435851705|ref|YP_007313291.1| - 3.8e-13 50.0 0.3 2.7e-11 43.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|435851705|ref|YP_007313291.1| - 1.6e-05 24.1 0.0 0.0074 15.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|435851705|ref|YP_007313291.1| - 1.8e-05 25.1 0.0 2.5e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|435851705|ref|YP_007313291.1| - 0.00029 20.2 0.0 0.00053 19.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|435851705|ref|YP_007313291.1| - 0.00034 19.9 0.1 0.13 11.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|435851705|ref|YP_007313291.1| - 0.0035 17.3 0.1 0.0044 17.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|435851705|ref|YP_007313291.1| - 0.0042 16.6 0.0 0.0068 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|435851705|ref|YP_007313291.1| - 0.0046 16.1 0.0 0.0073 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|435851705|ref|YP_007313291.1| - 0.0047 17.0 0.4 0.015 15.4 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|435851705|ref|YP_007313291.1| - 0.0084 14.6 0.0 0.01 14.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|435851705|ref|YP_007313291.1| - 0.01 15.8 0.1 0.027 14.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|435851705|ref|YP_007313291.1| - 0.012 15.3 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|435851705|ref|YP_007313291.1| - 0.012 15.8 0.4 0.086 13.0 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|435851705|ref|YP_007313291.1| - 0.012 15.0 0.3 0.28 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|435851705|ref|YP_007313291.1| - 0.015 14.9 0.0 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|435851705|ref|YP_007313291.1| - 0.017 14.5 0.0 0.044 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|435851705|ref|YP_007313291.1| - 0.017 14.7 0.1 0.039 13.6 0.0 1.6 2 0 0 2 2 1 0 NACHT domain AAA_18 PF13238.1 gi|435851705|ref|YP_007313291.1| - 0.018 15.3 1.1 0.031 14.5 0.7 1.8 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|435851705|ref|YP_007313291.1| - 0.019 15.7 0.9 0.042 14.6 0.6 2.0 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|435851705|ref|YP_007313291.1| - 0.023 14.1 0.3 0.26 10.6 0.1 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|435851705|ref|YP_007313291.1| - 0.027 14.0 0.0 0.084 12.4 0.0 1.8 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|435851705|ref|YP_007313291.1| - 0.029 13.2 0.6 0.19 10.6 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein MutS_V PF00488.16 gi|435851705|ref|YP_007313291.1| - 0.035 13.4 0.0 0.09 12.1 0.0 1.6 2 0 0 2 2 2 0 MutS domain V AAA_24 PF13479.1 gi|435851705|ref|YP_007313291.1| - 0.044 13.3 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|435851705|ref|YP_007313291.1| - 0.083 12.7 0.1 0.16 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|435851705|ref|YP_007313291.1| - 0.095 12.5 0.1 0.14 12.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|435851705|ref|YP_007313291.1| - 0.096 11.2 0.4 0.47 8.9 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MobB PF03205.9 gi|435851705|ref|YP_007313291.1| - 0.097 12.3 0.2 0.26 10.9 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|435851705|ref|YP_007313291.1| - 0.11 12.2 0.2 0.62 9.7 0.1 2.2 2 0 0 2 2 2 0 NTPase SRP54 PF00448.17 gi|435851705|ref|YP_007313291.1| - 0.11 11.9 0.1 0.45 9.9 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.12 gi|435851705|ref|YP_007313291.1| - 0.12 11.7 0.5 0.52 9.7 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|435851705|ref|YP_007313291.1| - 0.14 11.2 0.0 0.3 10.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.9 gi|435851705|ref|YP_007313291.1| - 0.18 11.5 0.9 0.75 9.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Oxidored_molyb PF00174.14 gi|435851706|ref|YP_007313292.1| - 1.4e-42 144.9 0.0 1.8e-42 144.6 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain HTH_45 PF14947.1 gi|435851707|ref|YP_007313293.1| - 4.2e-09 36.0 0.5 6.7e-09 35.4 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.1 gi|435851707|ref|YP_007313293.1| - 0.0026 17.7 0.1 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 Mrr N-terminal domain HemN_C PF06969.11 gi|435851707|ref|YP_007313293.1| - 0.047 13.7 0.1 0.077 13.0 0.1 1.4 1 0 0 1 1 1 0 HemN C-terminal domain HTH_27 PF13463.1 gi|435851707|ref|YP_007313293.1| - 0.057 13.7 0.0 0.12 12.7 0.0 1.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF4093 PF13331.1 gi|435851707|ref|YP_007313293.1| - 0.06 13.5 0.3 0.25 11.5 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4093) Rio2_N PF09202.6 gi|435851707|ref|YP_007313293.1| - 0.15 12.1 0.4 0.33 11.0 0.1 1.6 2 0 0 2 2 2 0 Rio2, N-terminal Peripla_BP_2 PF01497.13 gi|435851709|ref|YP_007313295.1| - 1.1e-23 83.6 0.0 1.5e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|435851710|ref|YP_007313296.1| - 2.1e-92 309.3 31.6 2.5e-92 309.0 21.9 1.0 1 0 0 1 1 1 1 FecCD transport family RhodobacterPufX PF11511.3 gi|435851710|ref|YP_007313296.1| - 1.9 7.9 10.4 0.13 11.6 0.3 3.2 3 0 0 3 3 3 0 Intrinsic membrane protein PufX ABC_tran PF00005.22 gi|435851711|ref|YP_007313297.1| - 5.6e-30 104.4 0.0 7.6e-30 103.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435851711|ref|YP_007313297.1| - 4e-12 46.7 0.7 8.3e-06 25.9 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|435851711|ref|YP_007313297.1| - 4.1e-08 32.6 0.1 0.00047 19.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|435851711|ref|YP_007313297.1| - 2e-05 25.0 0.1 2.9e-05 24.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|435851711|ref|YP_007313297.1| - 4.6e-05 22.7 0.5 0.0023 17.1 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|435851711|ref|YP_007313297.1| - 0.00014 21.2 0.0 0.00033 20.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|435851711|ref|YP_007313297.1| - 0.00019 21.5 2.2 0.0039 17.3 1.5 2.4 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|435851711|ref|YP_007313297.1| - 0.00022 20.4 0.0 0.00034 19.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|435851711|ref|YP_007313297.1| - 0.00043 20.0 0.1 0.00065 19.4 0.1 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|435851711|ref|YP_007313297.1| - 0.0011 18.8 0.2 0.036 13.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|435851711|ref|YP_007313297.1| - 0.0027 17.7 0.1 0.0057 16.6 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|435851711|ref|YP_007313297.1| - 0.0085 15.8 0.0 0.53 10.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|435851711|ref|YP_007313297.1| - 0.01 15.7 0.0 0.1 12.5 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|435851711|ref|YP_007313297.1| - 0.014 14.5 0.0 0.032 13.4 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|435851711|ref|YP_007313297.1| - 0.014 14.2 0.2 0.055 12.3 0.0 1.8 1 1 1 2 2 2 0 Type II/IV secretion system protein NB-ARC PF00931.17 gi|435851711|ref|YP_007313297.1| - 0.016 14.0 0.0 0.17 10.6 0.0 2.2 2 1 0 2 2 2 0 NB-ARC domain AAA_13 PF13166.1 gi|435851711|ref|YP_007313297.1| - 0.017 13.6 0.0 0.92 7.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|435851711|ref|YP_007313297.1| - 0.027 13.0 0.0 7.6 4.9 0.0 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class SRP54 PF00448.17 gi|435851711|ref|YP_007313297.1| - 0.03 13.7 0.0 0.068 12.6 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|435851711|ref|YP_007313297.1| - 0.035 13.5 0.0 0.33 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|435851711|ref|YP_007313297.1| - 0.047 13.4 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_24 PF13479.1 gi|435851711|ref|YP_007313297.1| - 0.063 12.8 0.0 0.099 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|435851711|ref|YP_007313297.1| - 0.08 12.3 0.0 1.4 8.2 0.0 2.1 2 0 0 2 2 2 0 MutS domain V MobB PF03205.9 gi|435851711|ref|YP_007313297.1| - 0.083 12.5 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|435851711|ref|YP_007313297.1| - 0.088 11.5 0.0 0.18 10.5 0.0 1.5 2 0 0 2 2 2 0 ArgK protein NTPase_1 PF03266.10 gi|435851711|ref|YP_007313297.1| - 0.092 12.4 0.5 0.94 9.1 0.1 2.2 2 0 0 2 2 2 0 NTPase NACHT PF05729.7 gi|435851711|ref|YP_007313297.1| - 0.097 12.3 0.3 0.19 11.3 0.1 1.5 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.12 gi|435851711|ref|YP_007313297.1| - 0.12 11.7 0.2 0.32 10.4 0.0 1.9 2 1 0 2 2 2 0 IstB-like ATP binding protein Rad17 PF03215.10 gi|435851711|ref|YP_007313297.1| - 0.13 10.9 0.5 0.23 10.0 0.0 1.5 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|435851711|ref|YP_007313297.1| - 0.2 11.8 1.0 0.76 9.9 0.7 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Methyltransf_18 PF12847.2 gi|435851712|ref|YP_007313298.1| - 4e-12 46.7 0.0 7.7e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|435851712|ref|YP_007313298.1| - 4.3e-10 39.9 0.1 9.5e-09 35.6 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435851712|ref|YP_007313298.1| - 1.9e-09 37.3 0.0 2.9e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|435851712|ref|YP_007313298.1| - 3.6e-08 33.2 0.0 5.7e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435851712|ref|YP_007313298.1| - 3.7e-07 29.6 0.0 5.9e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|435851712|ref|YP_007313298.1| - 4.9e-07 29.0 0.0 7.8e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|435851712|ref|YP_007313298.1| - 6.3e-07 29.7 0.0 1.2e-06 28.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435851712|ref|YP_007313298.1| - 1.1e-06 28.9 0.0 2.1e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|435851712|ref|YP_007313298.1| - 1.7e-06 27.2 0.0 2.4e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PCMT PF01135.14 gi|435851712|ref|YP_007313298.1| - 1.3e-05 24.8 0.0 2.1e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|435851712|ref|YP_007313298.1| - 0.0003 20.0 0.0 0.00054 19.1 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.13 gi|435851712|ref|YP_007313298.1| - 0.00058 19.0 0.0 0.0011 18.1 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.7 gi|435851712|ref|YP_007313298.1| - 0.00059 18.8 0.0 0.0009 18.1 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase CMAS PF02353.15 gi|435851712|ref|YP_007313298.1| - 0.00079 18.5 0.0 0.0016 17.5 0.0 1.5 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|435851712|ref|YP_007313298.1| - 0.00098 19.1 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|435851712|ref|YP_007313298.1| - 0.0014 17.7 0.1 0.0027 16.8 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|435851712|ref|YP_007313298.1| - 0.0015 17.6 0.0 0.0025 16.9 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Met_10 PF02475.11 gi|435851712|ref|YP_007313298.1| - 0.0026 17.3 0.0 0.0048 16.5 0.0 1.7 1 1 0 1 1 1 1 Met-10+ like-protein tRNA_U5-meth_tr PF05958.6 gi|435851712|ref|YP_007313298.1| - 0.0039 15.9 0.0 0.0057 15.3 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Cons_hypoth95 PF03602.10 gi|435851712|ref|YP_007313298.1| - 0.0049 16.2 0.0 0.0077 15.6 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|435851712|ref|YP_007313298.1| - 0.0095 15.4 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_16 PF10294.4 gi|435851712|ref|YP_007313298.1| - 0.012 15.1 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase DUF938 PF06080.7 gi|435851712|ref|YP_007313298.1| - 0.026 14.0 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) MetW PF07021.7 gi|435851712|ref|YP_007313298.1| - 0.078 12.3 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FmdE PF02663.9 gi|435851713|ref|YP_007313299.1| - 9.3e-41 138.7 0.1 1.3e-40 138.3 0.1 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|435851713|ref|YP_007313299.1| - 5.4e-05 22.8 2.4 0.00018 21.1 1.8 1.8 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger LIM PF00412.17 gi|435851713|ref|YP_007313299.1| - 0.043 13.8 1.0 0.11 12.6 0.7 1.6 1 0 0 1 1 1 0 LIM domain zinc_ribbon_5 PF13719.1 gi|435851713|ref|YP_007313299.1| - 0.05 13.1 0.0 0.2 11.2 0.0 2.0 1 0 0 1 1 1 0 zinc-ribbon domain RRN7 PF11781.3 gi|435851713|ref|YP_007313299.1| - 0.19 11.2 2.7 0.28 10.7 0.5 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 OrfB_Zn_ribbon PF07282.6 gi|435851713|ref|YP_007313299.1| - 0.91 9.2 4.9 0.33 10.6 0.2 2.5 3 0 0 3 3 3 0 Putative transposase DNA-binding domain Fer4 PF00037.22 gi|435851714|ref|YP_007313300.1| - 1.9e-17 62.0 15.0 3.7e-09 35.7 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435851714|ref|YP_007313300.1| - 1.7e-15 56.1 16.2 3.8e-08 32.8 1.8 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435851714|ref|YP_007313300.1| - 2.4e-13 50.1 25.0 4.6e-10 39.5 9.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435851714|ref|YP_007313300.1| - 3.4e-12 46.5 10.8 4.3e-12 46.2 7.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435851714|ref|YP_007313300.1| - 8.5e-11 41.4 10.9 1.4e-10 40.8 7.6 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435851714|ref|YP_007313300.1| - 9.1e-11 42.3 7.8 5.8e-05 23.7 0.4 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|435851714|ref|YP_007313300.1| - 1.6e-10 40.3 14.3 3e-05 23.9 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435851714|ref|YP_007313300.1| - 4.5e-10 38.8 16.5 4.5e-05 23.1 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435851714|ref|YP_007313300.1| - 3.5e-08 33.1 14.0 8.4e-08 31.9 9.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|435851714|ref|YP_007313300.1| - 6.9e-08 32.8 14.7 0.00021 21.6 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435851714|ref|YP_007313300.1| - 8.8e-08 32.0 13.0 0.0053 16.7 2.5 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435851714|ref|YP_007313300.1| - 2.6e-07 30.6 20.3 0.0012 19.2 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|435851714|ref|YP_007313300.1| - 8.7e-06 26.2 16.9 0.0037 17.8 11.6 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|435851714|ref|YP_007313300.1| - 2.1e-05 24.7 12.4 0.0066 16.7 1.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|435851714|ref|YP_007313300.1| - 6.8e-05 22.6 5.0 0.00011 22.0 3.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435851714|ref|YP_007313300.1| - 0.00028 21.2 15.1 0.023 15.0 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|435851714|ref|YP_007313300.1| - 0.0089 15.8 7.0 0.012 15.3 4.9 1.4 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster HCV_NS2 PF01538.13 gi|435851714|ref|YP_007313300.1| - 0.038 13.4 8.9 0.35 10.2 1.1 2.0 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS2 Fer4_20 PF14691.1 gi|435851714|ref|YP_007313300.1| - 0.56 9.8 9.1 0.36 10.4 0.6 2.0 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NinF PF05810.7 gi|435851714|ref|YP_007313300.1| - 4.4 7.1 6.5 1 9.2 0.5 2.1 1 1 1 2 2 2 0 NinF protein MafB19-deam PF14437.1 gi|435851714|ref|YP_007313300.1| - 5.4 6.6 7.1 2.3 7.8 3.3 1.5 1 1 1 2 2 2 0 MafB19-like deaminase DUF1801 PF08818.6 gi|435851715|ref|YP_007313301.1| - 8.2e-20 70.8 0.0 9.5e-20 70.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DU1801) Fer4_13 PF13370.1 gi|435851716|ref|YP_007313302.1| - 2.4e-20 72.6 4.9 2.9e-20 72.3 3.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|435851716|ref|YP_007313302.1| - 1.1e-12 48.3 4.0 1.3e-12 48.0 2.8 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|435851716|ref|YP_007313302.1| - 1.1e-05 25.6 1.8 1.5e-05 25.1 1.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435851716|ref|YP_007313302.1| - 2.4e-05 24.0 0.6 0.002 17.9 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435851716|ref|YP_007313302.1| - 0.0015 18.0 8.0 0.026 14.1 0.9 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435851716|ref|YP_007313302.1| - 0.012 15.9 2.9 0.037 14.4 2.0 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435851716|ref|YP_007313302.1| - 0.031 14.0 3.0 0.14 12.0 2.4 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851716|ref|YP_007313302.1| - 0.062 13.2 0.4 0.062 13.2 0.3 2.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|435851716|ref|YP_007313302.1| - 0.14 11.9 0.7 0.2 11.4 0.5 1.3 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_4 PF12800.2 gi|435851716|ref|YP_007313302.1| - 2.2 8.8 6.1 1.7 9.1 0.8 2.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435851716|ref|YP_007313302.1| - 2.6 8.0 6.8 5.5 7.0 0.5 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain B12-binding PF02310.14 gi|435851717|ref|YP_007313303.1| - 6.3e-20 71.2 0.5 9.8e-20 70.6 0.4 1.2 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|435851717|ref|YP_007313303.1| - 6e-11 42.2 2.4 1.2e-10 41.2 0.3 2.2 2 1 0 2 2 2 1 B12 binding domain Apo-CIII PF05778.7 gi|435851717|ref|YP_007313303.1| - 0.0027 17.0 0.0 0.0065 15.8 0.0 1.6 1 0 0 1 1 1 1 Apolipoprotein CIII (Apo-CIII) NHase_alpha PF02979.11 gi|435851717|ref|YP_007313303.1| - 0.1 11.8 0.3 1.6 8.0 0.0 2.1 2 0 0 2 2 2 0 Nitrile hydratase, alpha chain MarR_2 PF12802.2 gi|435851718|ref|YP_007313304.1| - 4.5e-09 35.8 0.0 7.5e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|435851718|ref|YP_007313304.1| - 5.6e-09 35.5 0.0 1.1e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|435851718|ref|YP_007313304.1| - 2.4e-05 24.5 0.0 4.7e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|435851718|ref|YP_007313304.1| - 0.00019 21.2 0.2 0.0006 19.7 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|435851718|ref|YP_007313304.1| - 0.0069 16.0 0.0 0.017 14.8 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|435851718|ref|YP_007313304.1| - 0.028 14.5 0.3 0.053 13.6 0.2 1.6 1 1 0 1 1 1 0 Penicillinase repressor HTH_24 PF13412.1 gi|435851718|ref|YP_007313304.1| - 0.028 13.7 0.0 0.075 12.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding KIP1 PF07765.7 gi|435851718|ref|YP_007313304.1| - 0.1 12.4 0.3 0.85 9.5 0.0 2.3 2 0 0 2 2 2 0 KIP1-like protein Lon_C PF05362.8 gi|435851719|ref|YP_007313305.1| - 1.9e-87 291.9 1.5 3.9e-87 290.8 1.0 1.6 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA PF00004.24 gi|435851719|ref|YP_007313305.1| - 1.9e-21 76.6 0.0 1.2e-20 73.9 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) LON PF02190.11 gi|435851719|ref|YP_007313305.1| - 1.9e-14 53.8 0.1 1.9e-14 53.8 0.1 1.9 2 0 0 2 2 1 1 ATP-dependent protease La (LON) domain ChlI PF13541.1 gi|435851719|ref|YP_007313305.1| - 2.7e-11 43.0 0.1 5.1e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|435851719|ref|YP_007313305.1| - 8.9e-09 35.1 0.0 4.7e-08 32.8 0.0 2.3 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|435851719|ref|YP_007313305.1| - 3.2e-05 24.7 3.3 9.2e-05 23.2 0.2 3.3 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|435851719|ref|YP_007313305.1| - 3.3e-05 23.9 0.1 0.00018 21.5 0.1 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|435851719|ref|YP_007313305.1| - 3.6e-05 23.9 0.3 0.00047 20.2 0.0 2.8 2 1 0 2 2 1 1 AAA domain AAA_2 PF07724.9 gi|435851719|ref|YP_007313305.1| - 7.4e-05 22.7 0.0 0.00023 21.0 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|435851719|ref|YP_007313305.1| - 0.00023 20.3 0.7 0.001 18.1 0.0 2.4 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|435851719|ref|YP_007313305.1| - 0.00027 20.4 0.0 0.0006 19.2 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein Birna_VP4 PF01768.11 gi|435851719|ref|YP_007313305.1| - 0.00043 19.4 0.1 0.00086 18.4 0.1 1.5 1 0 0 1 1 1 1 Birnavirus VP4 protein AAA_33 PF13671.1 gi|435851719|ref|YP_007313305.1| - 0.0011 18.7 0.1 0.003 17.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|435851719|ref|YP_007313305.1| - 0.0012 17.6 2.7 0.025 13.3 0.0 2.6 3 0 0 3 3 2 1 TIP49 C-terminus AAA_PrkA PF08298.6 gi|435851719|ref|YP_007313305.1| - 0.0012 17.6 0.0 0.0023 16.6 0.0 1.4 1 0 0 1 1 1 1 PrkA AAA domain AAA_19 PF13245.1 gi|435851719|ref|YP_007313305.1| - 0.0032 17.1 0.1 0.0084 15.8 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain Rad17 PF03215.10 gi|435851719|ref|YP_007313305.1| - 0.0059 15.3 0.0 0.013 14.2 0.0 1.5 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|435851719|ref|YP_007313305.1| - 0.0082 16.0 0.0 0.044 13.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|435851719|ref|YP_007313305.1| - 0.0092 15.5 0.0 0.033 13.7 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|435851719|ref|YP_007313305.1| - 0.011 15.3 0.8 0.041 13.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|435851719|ref|YP_007313305.1| - 0.016 14.8 1.5 0.1 12.3 0.1 2.9 2 1 1 3 3 2 0 NTPase Viral_helicase1 PF01443.13 gi|435851719|ref|YP_007313305.1| - 0.018 14.5 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.1 gi|435851719|ref|YP_007313305.1| - 0.02 15.2 0.1 0.02 15.2 0.1 3.7 4 1 0 4 4 3 0 AAA domain RNA_helicase PF00910.17 gi|435851719|ref|YP_007313305.1| - 0.028 14.5 0.0 0.083 13.0 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Parvo_NS1 PF01057.12 gi|435851719|ref|YP_007313305.1| - 0.036 12.9 0.0 0.076 11.8 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.7 gi|435851719|ref|YP_007313305.1| - 0.045 12.8 0.1 0.11 11.5 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.1 gi|435851719|ref|YP_007313305.1| - 0.047 13.2 0.0 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|435851719|ref|YP_007313305.1| - 0.048 13.0 0.1 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|435851719|ref|YP_007313305.1| - 0.066 13.1 0.1 0.21 11.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|435851719|ref|YP_007313305.1| - 0.085 11.7 0.8 0.32 9.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) TFIIA_gamma_N PF02268.11 gi|435851719|ref|YP_007313305.1| - 0.1 12.1 0.2 1.3 8.6 0.0 2.7 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain NACHT PF05729.7 gi|435851719|ref|YP_007313305.1| - 0.11 12.1 0.0 0.64 9.6 0.0 2.2 2 0 0 2 2 2 0 NACHT domain SKI PF01202.17 gi|435851719|ref|YP_007313305.1| - 0.14 12.0 1.7 0.26 11.1 0.1 2.1 2 0 0 2 2 2 0 Shikimate kinase AAA_24 PF13479.1 gi|435851719|ref|YP_007313305.1| - 0.15 11.6 0.5 0.28 10.7 0.3 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|435851719|ref|YP_007313305.1| - 1.3 9.2 11.2 0.98 9.7 0.0 2.6 1 1 0 2 2 2 0 AAA domain Radical_SAM PF04055.16 gi|435851720|ref|YP_007313306.1| - 1.4e-14 54.6 0.0 2e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily AIG2 PF06094.7 gi|435851720|ref|YP_007313306.1| - 3.9e-13 49.7 0.0 1e-12 48.3 0.0 1.7 2 0 0 2 2 2 1 AIG2-like family Fer4_14 PF13394.1 gi|435851720|ref|YP_007313306.1| - 5.5e-08 32.8 0.0 1.3e-07 31.6 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF2746 PF10874.3 gi|435851720|ref|YP_007313306.1| - 0.022 14.9 0.0 0.56 10.4 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2746) FAD_binding_3 PF01494.14 gi|435851721|ref|YP_007313307.1| - 2.2e-10 40.1 1.3 0.00025 20.2 0.0 3.1 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|435851721|ref|YP_007313307.1| - 1.1e-09 37.6 5.6 4.9e-07 28.9 0.3 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|435851721|ref|YP_007313307.1| - 3.7e-09 35.9 0.0 5.4e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|435851721|ref|YP_007313307.1| - 2.5e-08 33.4 0.7 6.3e-08 32.1 0.5 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|435851721|ref|YP_007313307.1| - 7.1e-08 31.3 0.2 1.1e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|435851721|ref|YP_007313307.1| - 1.4e-07 31.5 0.2 3.1e-07 30.4 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|435851721|ref|YP_007313307.1| - 1.4e-07 31.3 0.0 9.7e-07 28.7 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|435851721|ref|YP_007313307.1| - 9.7e-07 27.9 0.6 1.7e-06 27.1 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|435851721|ref|YP_007313307.1| - 1.5e-05 24.0 0.1 0.00023 20.2 0.0 2.3 2 1 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.12 gi|435851721|ref|YP_007313307.1| - 1.7e-05 24.0 0.0 3.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|435851721|ref|YP_007313307.1| - 0.00077 19.5 0.1 0.0019 18.2 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|435851721|ref|YP_007313307.1| - 0.0046 16.6 0.3 0.011 15.4 0.2 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|435851721|ref|YP_007313307.1| - 0.0054 15.4 0.3 0.021 13.4 0.0 1.9 2 1 0 2 2 2 1 Tryptophan halogenase Pyr_redox PF00070.22 gi|435851721|ref|YP_007313307.1| - 0.023 15.0 0.1 0.1 12.9 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|435851721|ref|YP_007313307.1| - 0.066 11.5 0.0 0.11 10.7 0.0 1.2 1 0 0 1 1 1 0 GDP dissociation inhibitor TrkA_N PF02254.13 gi|435851721|ref|YP_007313307.1| - 0.099 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_9 PF13454.1 gi|435851721|ref|YP_007313307.1| - 0.13 12.0 0.0 0.75 9.5 0.0 2.3 2 1 0 2 2 2 0 FAD-NAD(P)-binding SPX PF03105.14 gi|435851722|ref|YP_007313308.1| - 0.033 13.9 2.4 0.043 13.6 1.7 1.1 1 0 0 1 1 1 0 SPX domain DUF3410 PF11890.3 gi|435851722|ref|YP_007313308.1| - 0.25 10.9 4.0 4.1 7.1 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3410) DivIC PF04977.10 gi|435851722|ref|YP_007313308.1| - 1.1 8.8 5.4 0.39 10.2 1.3 2.0 2 0 0 2 2 2 0 Septum formation initiator Methyltransf_12 PF08242.7 gi|435851723|ref|YP_007313309.1| - 4.8e-15 55.8 0.0 9.1e-15 54.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435851723|ref|YP_007313309.1| - 4.7e-14 52.9 0.0 1.5e-13 51.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|435851723|ref|YP_007313309.1| - 9.7e-10 38.8 0.0 1.7e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435851723|ref|YP_007313309.1| - 7.1e-08 32.1 0.0 2.4e-07 30.4 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435851723|ref|YP_007313309.1| - 7.8e-08 32.6 0.0 2.4e-07 31.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|435851723|ref|YP_007313309.1| - 5e-05 22.5 0.0 5.9e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|435851723|ref|YP_007313309.1| - 5.4e-05 22.9 0.0 6.9e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_PK PF05891.7 gi|435851723|ref|YP_007313309.1| - 0.013 14.7 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase ResIII PF04851.10 gi|435851723|ref|YP_007313309.1| - 0.016 15.0 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit MTS PF05175.9 gi|435851723|ref|YP_007313309.1| - 0.019 14.3 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_5 PF01795.14 gi|435851723|ref|YP_007313309.1| - 0.11 11.7 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 MraW methylase family zf-RING_3 PF14369.1 gi|435851724|ref|YP_007313310.1| - 0.044 13.7 1.5 0.068 13.1 1.0 1.3 1 0 0 1 1 1 0 zinc-finger zf-C2HC_2 PF13913.1 gi|435851724|ref|YP_007313310.1| - 0.048 13.3 4.4 0.16 11.6 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Tmemb_55A PF09788.4 gi|435851724|ref|YP_007313310.1| - 0.054 12.6 0.2 0.054 12.6 0.1 1.1 1 0 0 1 1 1 0 Transmembrane protein 55A zinc_ribbon_5 PF13719.1 gi|435851724|ref|YP_007313310.1| - 0.12 11.9 3.8 2.7 7.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|435851724|ref|YP_007313310.1| - 0.17 11.6 4.3 3.6 7.3 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|435851724|ref|YP_007313310.1| - 0.21 10.9 1.0 9 5.7 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Sgf11 PF08209.6 gi|435851724|ref|YP_007313310.1| - 0.7 9.2 4.6 2.3 7.6 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-CCHC PF00098.18 gi|435851724|ref|YP_007313310.1| - 0.74 9.8 0.4 0.74 9.8 0.3 2.2 2 0 0 2 2 2 0 Zinc knuckle Fer4 PF00037.22 gi|435851725|ref|YP_007313311.1| - 4.3e-09 35.5 14.2 6.6e-06 25.4 1.2 2.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435851725|ref|YP_007313311.1| - 1e-06 29.0 14.8 1.3e-06 28.6 10.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435851725|ref|YP_007313311.1| - 4e-06 26.4 15.1 8.2e-05 22.3 1.0 2.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435851725|ref|YP_007313311.1| - 4.6e-06 26.8 14.7 7.1e-06 26.1 10.2 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435851725|ref|YP_007313311.1| - 2.2e-05 24.2 14.0 2.7e-05 23.9 9.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435851725|ref|YP_007313311.1| - 5.1e-05 22.9 13.9 6.5e-05 22.6 9.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851725|ref|YP_007313311.1| - 0.00025 20.7 2.2 0.00025 20.7 1.5 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435851725|ref|YP_007313311.1| - 0.0016 18.5 3.3 0.0016 18.5 2.3 2.9 2 1 1 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435851725|ref|YP_007313311.1| - 0.002 18.8 12.3 0.15 12.8 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|435851725|ref|YP_007313311.1| - 0.099 13.2 13.7 1.5 9.4 9.5 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|435851725|ref|YP_007313311.1| - 0.1 12.9 3.4 0.1 12.9 2.4 2.2 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435851725|ref|YP_007313311.1| - 0.14 12.7 4.7 0.14 12.7 3.3 2.7 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435851725|ref|YP_007313311.1| - 1.6 8.7 17.1 33 4.6 12.0 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435851725|ref|YP_007313311.1| - 6.6 7.2 14.6 94 3.5 10.1 2.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain Yip1 PF04893.12 gi|435851726|ref|YP_007313312.1| - 0.062 12.8 9.2 0.54 9.7 6.4 2.1 1 1 0 1 1 1 0 Yip1 domain Guanylate_cyc PF00211.15 gi|435851727|ref|YP_007313313.1| - 4.5e-13 48.9 0.2 6.6e-13 48.4 0.2 1.1 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain Guanylate_cyc PF00211.15 gi|435851728|ref|YP_007313314.1| - 4.1e-05 23.0 0.0 5.3e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain HTH_Mga PF08280.6 gi|435851728|ref|YP_007313314.1| - 0.12 12.1 1.3 0.29 10.9 0.9 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Methyltransf_31 PF13847.1 gi|435851729|ref|YP_007313315.1| - 5.1e-26 91.0 0.0 8.9e-26 90.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|435851729|ref|YP_007313315.1| - 9.9e-25 86.8 0.0 3e-24 85.3 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|435851729|ref|YP_007313315.1| - 6.8e-22 77.7 0.0 1.5e-21 76.6 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|435851729|ref|YP_007313315.1| - 5.1e-20 71.8 0.0 1.1e-19 70.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|435851729|ref|YP_007313315.1| - 2.1e-19 69.8 0.0 3.6e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435851729|ref|YP_007313315.1| - 9.4e-17 61.2 0.0 2.1e-16 60.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435851729|ref|YP_007313315.1| - 1.5e-13 51.2 0.0 2.4e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435851729|ref|YP_007313315.1| - 9.1e-10 38.1 0.0 1.8e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|435851729|ref|YP_007313315.1| - 6e-09 35.3 0.0 8.4e-09 34.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|435851729|ref|YP_007313315.1| - 8.8e-08 31.4 0.0 9.2e-07 28.1 0.0 2.1 1 1 0 1 1 1 1 Putative methyltransferase PCMT PF01135.14 gi|435851729|ref|YP_007313315.1| - 1.9e-07 30.8 0.0 2.4e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|435851729|ref|YP_007313315.1| - 1e-06 28.0 0.0 2.3e-06 26.9 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|435851729|ref|YP_007313315.1| - 4.4e-06 26.7 0.0 8.4e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|435851729|ref|YP_007313315.1| - 9.4e-06 24.5 0.0 1.4e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.10 gi|435851729|ref|YP_007313315.1| - 6.4e-05 22.6 0.0 0.00062 19.4 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase DREV PF05219.7 gi|435851729|ref|YP_007313315.1| - 0.00011 21.1 0.0 0.00017 20.5 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase FmrO PF07091.6 gi|435851729|ref|YP_007313315.1| - 0.00017 20.6 0.0 0.00023 20.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) NodS PF05401.6 gi|435851729|ref|YP_007313315.1| - 0.0004 19.8 0.0 0.0011 18.4 0.0 1.6 2 0 0 2 2 2 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.11 gi|435851729|ref|YP_007313315.1| - 0.00048 18.6 0.0 0.00074 17.9 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_32 PF13679.1 gi|435851729|ref|YP_007313315.1| - 0.00098 18.8 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|435851729|ref|YP_007313315.1| - 0.0015 18.0 0.0 0.0024 17.4 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|435851729|ref|YP_007313315.1| - 0.0025 17.4 0.1 0.005 16.4 0.1 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.9 gi|435851729|ref|YP_007313315.1| - 0.014 14.6 0.0 0.023 13.8 0.0 1.5 1 0 0 1 1 1 0 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|435851729|ref|YP_007313315.1| - 0.061 12.3 0.0 1.1 8.2 0.0 2.1 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase DUF3249 PF11615.3 gi|435851729|ref|YP_007313315.1| - 0.11 12.2 0.2 0.72 9.6 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3249) HK PF02110.10 gi|435851730|ref|YP_007313316.1| - 2.5e-84 282.3 2.7 2.8e-84 282.1 1.8 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|435851730|ref|YP_007313316.1| - 1.9e-09 37.0 1.1 2.2e-09 36.9 0.7 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|435851730|ref|YP_007313316.1| - 4.3e-07 29.4 0.5 5.9e-07 29.0 0.4 1.1 1 0 0 1 1 1 1 Carbohydrate kinase TMP-TENI PF02581.12 gi|435851731|ref|YP_007313317.1| - 1.4e-63 213.2 3.1 1.7e-63 212.9 2.1 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI Ribul_P_3_epim PF00834.14 gi|435851731|ref|YP_007313317.1| - 0.00098 18.2 0.4 0.0025 16.9 0.3 1.7 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family NMO PF03060.10 gi|435851731|ref|YP_007313317.1| - 0.0011 18.1 3.9 0.0032 16.6 2.4 1.9 1 1 1 2 2 2 1 Nitronate monooxygenase Oxidored_FMN PF00724.15 gi|435851731|ref|YP_007313317.1| - 0.0065 15.4 0.2 0.013 14.5 0.1 1.5 1 1 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family ThiF PF00899.16 gi|435851732|ref|YP_007313318.1| - 1.1e-44 151.5 0.2 1.6e-44 150.9 0.1 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|435851732|ref|YP_007313318.1| - 4.4e-19 67.8 0.0 9.9e-19 66.7 0.0 1.6 2 0 0 2 2 2 1 MoeZ/MoeB domain Hormone_3 PF00159.13 gi|435851732|ref|YP_007313318.1| - 5.8 7.0 6.8 4.6 7.3 0.5 2.6 2 0 0 2 2 2 0 Pancreatic hormone peptide SnoaL PF07366.7 gi|435851733|ref|YP_007313319.1| - 4.2e-35 120.0 0.0 4.7e-35 119.9 0.0 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|435851733|ref|YP_007313319.1| - 1.3e-11 44.7 0.2 1.5e-11 44.5 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|435851733|ref|YP_007313319.1| - 6.2e-05 23.1 0.0 8e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) Abi PF02517.11 gi|435851734|ref|YP_007313320.1| - 2e-17 63.1 4.3 2e-17 63.1 3.0 2.7 2 1 0 2 2 2 2 CAAX protease self-immunity DUF3303 PF11746.3 gi|435851736|ref|YP_007313322.1| - 7.5e-07 29.4 0.1 8.7e-07 29.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) PAS_9 PF13426.1 gi|435851738|ref|YP_007313324.1| - 2.6e-51 172.3 5.5 5.8e-12 45.8 0.0 6.4 6 0 0 6 6 6 6 PAS domain PAS PF00989.19 gi|435851738|ref|YP_007313324.1| - 5.1e-43 145.4 1.4 8.8e-08 31.9 0.0 6.0 6 0 0 6 6 6 5 PAS fold PAS_3 PF08447.6 gi|435851738|ref|YP_007313324.1| - 1.3e-37 127.7 0.1 6e-15 55.1 0.0 5.4 5 0 0 5 5 5 4 PAS fold PAS_4 PF08448.5 gi|435851738|ref|YP_007313324.1| - 6.4e-30 103.4 0.0 0.00016 21.7 0.0 6.9 6 1 0 6 6 6 6 PAS fold PAS_8 PF13188.1 gi|435851738|ref|YP_007313324.1| - 3.5e-25 86.9 2.7 1.6e-06 27.7 0.0 5.1 4 0 0 4 4 4 4 PAS domain GAF_2 PF13185.1 gi|435851738|ref|YP_007313324.1| - 3.8e-12 46.9 0.0 8.1e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|435851738|ref|YP_007313324.1| - 1.3e-09 38.1 0.0 3.2e-09 36.9 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_11 PF14598.1 gi|435851738|ref|YP_007313324.1| - 2.3e-06 27.5 0.0 0.077 12.9 0.0 3.6 3 0 0 3 3 3 2 PAS domain PAS_10 PF13596.1 gi|435851738|ref|YP_007313324.1| - 4.8e-05 23.5 0.0 0.22 11.7 0.0 3.9 2 1 1 3 3 3 1 PAS domain GAF PF01590.21 gi|435851738|ref|YP_007313324.1| - 0.0025 17.9 0.0 0.005 16.9 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.2 gi|435851738|ref|YP_007313324.1| - 0.0031 17.5 6.1 1.5 8.8 0.0 5.2 5 3 0 5 5 4 1 PAS fold B12-binding PF02310.14 gi|435851739|ref|YP_007313325.1| - 2.8e-17 62.7 0.1 6.3e-17 61.5 0.1 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|435851739|ref|YP_007313325.1| - 2e-14 53.3 0.1 4.7e-14 52.1 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain BMC PF00936.14 gi|435851739|ref|YP_007313325.1| - 0.014 15.0 1.4 0.27 10.9 0.0 2.9 3 0 0 3 3 3 0 BMC domain DNA_pol3_gamma3 PF12169.3 gi|435851739|ref|YP_007313325.1| - 0.046 13.4 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III B12-binding PF02310.14 gi|435851740|ref|YP_007313326.1| - 2.1e-20 72.7 0.5 3.9e-20 71.9 0.3 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|435851740|ref|YP_007313326.1| - 5.9e-15 55.0 0.1 1.5e-14 53.7 0.1 1.7 1 0 0 1 1 1 1 B12 binding domain MtaB PF12176.3 gi|435851741|ref|YP_007313327.1| - 1.2e-236 785.5 6.0 1.4e-236 785.3 4.2 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit CN_hydrolase PF00795.17 gi|435851742|ref|YP_007313328.1| - 2.1e-22 79.4 0.0 2.6e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF4440 PF14534.1 gi|435851744|ref|YP_007313330.1| - 6.2e-09 36.0 0.0 8.3e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.1 gi|435851744|ref|YP_007313330.1| - 0.0085 16.1 0.0 0.018 15.0 0.0 1.5 1 1 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.1 gi|435851744|ref|YP_007313330.1| - 0.033 14.0 0.1 0.13 12.2 0.1 1.7 1 1 0 1 1 1 0 SnoaL-like domain DUF4157 PF13699.1 gi|435851745|ref|YP_007313331.1| - 3.1e-31 107.3 0.2 7.2e-31 106.1 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) DUF4157 PF13699.1 gi|435851746|ref|YP_007313332.1| - 4.8e-30 103.5 0.4 7.8e-30 102.8 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_MA_2 PF13485.1 gi|435851746|ref|YP_007313332.1| - 0.082 12.9 0.1 0.15 12.0 0.1 1.5 1 1 0 1 1 1 0 Peptidase MA superfamily DUF4157 PF13699.1 gi|435851747|ref|YP_007313333.1| - 2.1e-25 88.6 0.1 4e-25 87.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) UCR_14kD PF02271.11 gi|435851747|ref|YP_007313333.1| - 0.14 11.9 0.2 1.1 9.0 0.1 2.2 2 1 0 2 2 2 0 Ubiquinol-cytochrome C reductase complex 14kD subunit Bromo_TP PF07524.8 gi|435851749|ref|YP_007313335.1| - 0.12 12.1 0.1 0.41 10.4 0.1 1.9 2 0 0 2 2 2 0 Bromodomain associated Pex19 PF04614.7 gi|435851749|ref|YP_007313335.1| - 0.17 11.5 3.2 0.34 10.4 2.2 1.4 1 0 0 1 1 1 0 Pex19 protein family Tail_P2_I PF09684.5 gi|435851750|ref|YP_007313336.1| - 1.4e-10 40.8 0.0 3e-09 36.5 0.0 2.3 2 0 0 2 2 2 1 Phage tail protein (Tail_P2_I) NHL PF01436.16 gi|435851750|ref|YP_007313336.1| - 4.3e-06 26.4 0.7 4.4 7.4 0.0 6.0 6 0 0 6 6 6 2 NHL repeat SBBP PF06739.6 gi|435851750|ref|YP_007313336.1| - 0.0017 18.1 0.0 0.11 12.3 0.0 3.2 3 0 0 3 3 3 1 Beta-propeller repeat Baseplate_J PF04865.9 gi|435851751|ref|YP_007313337.1| - 4.6e-07 29.4 0.0 1.3e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 Baseplate J-like protein Jag_N PF14804.1 gi|435851751|ref|YP_007313337.1| - 0.12 12.4 0.1 0.42 10.6 0.0 1.9 2 0 0 2 2 2 0 Jag N-terminus DUF879 PF05947.7 gi|435851751|ref|YP_007313337.1| - 0.15 10.3 0.0 0.21 9.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF879) Baseplate_J PF04865.9 gi|435851752|ref|YP_007313338.1| - 9.7e-18 64.3 0.1 2.2e-17 63.2 0.0 1.5 2 0 0 2 2 2 1 Baseplate J-like protein HHH_5 PF14520.1 gi|435851752|ref|YP_007313338.1| - 0.0032 17.6 0.0 0.0076 16.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain Mitofilin PF09731.4 gi|435851752|ref|YP_007313338.1| - 0.066 11.8 0.1 0.11 11.0 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial inner membrane protein GPW_gp25 PF04965.9 gi|435851753|ref|YP_007313339.1| - 1.7e-19 69.1 0.0 2e-19 68.9 0.0 1.0 1 0 0 1 1 1 1 Gene 25-like lysozyme PAAR_motif PF05488.8 gi|435851754|ref|YP_007313340.1| - 1.8e-16 59.8 4.1 6.3e-15 54.9 1.9 2.7 1 1 0 1 1 1 1 PAAR motif DUF4150 PF13665.1 gi|435851754|ref|YP_007313340.1| - 0.001 18.9 0.0 1.6 8.6 0.0 2.5 2 1 1 3 3 3 2 Domain of unknown function (DUF4150) Phage_base_V PF04717.7 gi|435851755|ref|YP_007313341.1| - 5.6e-21 74.2 0.1 8e-21 73.7 0.1 1.2 1 0 0 1 1 1 1 Phage-related baseplate assembly protein DUF1312 PF07009.6 gi|435851755|ref|YP_007313341.1| - 0.043 13.6 1.0 0.078 12.8 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1312) RTX_C PF08339.5 gi|435851755|ref|YP_007313341.1| - 0.067 12.8 4.8 0.12 12.1 3.3 1.4 1 0 0 1 1 1 0 RTX C-terminal domain Phage_GPD PF05954.6 gi|435851756|ref|YP_007313342.1| - 2.5e-07 30.2 0.0 2.8e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) LysM PF01476.15 gi|435851757|ref|YP_007313343.1| - 7.1e-08 32.2 0.0 2.8e-07 30.2 0.0 2.1 2 1 0 2 2 2 1 LysM domain DIX PF00778.12 gi|435851757|ref|YP_007313343.1| - 0.057 13.1 0.0 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 DIX domain Phage_tail_X PF05489.7 gi|435851757|ref|YP_007313343.1| - 0.091 12.2 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Phage Tail Protein X ORF6C PF10552.4 gi|435851758|ref|YP_007313344.1| - 0.095 12.4 1.3 1 9.0 0.2 2.8 2 1 0 2 2 2 0 ORF6C domain Phage_T4_gp19 PF06841.7 gi|435851759|ref|YP_007313345.1| - 3.1e-45 153.0 0.3 3.4e-45 152.9 0.2 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 Phage_P2_GpE PF06528.7 gi|435851760|ref|YP_007313346.1| - 0.00083 18.7 0.6 0.0012 18.1 0.5 1.4 1 0 0 1 1 1 1 Phage P2 GpE zinc_ribbon_5 PF13719.1 gi|435851761|ref|YP_007313347.1| - 0.007 15.9 0.1 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|435851761|ref|YP_007313347.1| - 0.011 15.3 0.1 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|435851761|ref|YP_007313347.1| - 0.093 12.4 0.3 0.14 11.8 0.2 1.3 1 0 0 1 1 1 0 zinc-finger of a C2HC-type DUF2072 PF09845.4 gi|435851761|ref|YP_007313347.1| - 0.11 12.4 0.1 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Phage_T4_gp19 PF06841.7 gi|435851762|ref|YP_007313348.1| - 2.8e-44 150.0 0.0 3.1e-44 149.8 0.0 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 CLN5 PF15014.1 gi|435851762|ref|YP_007313348.1| - 0.02 14.2 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Ceroid-lipofuscinosis neuronal protein 5 Scm3 PF10384.4 gi|435851762|ref|YP_007313348.1| - 0.11 11.9 0.0 0.46 9.9 0.0 2.0 2 0 0 2 2 2 0 Centromere protein Scm3 Phage_sheath_1 PF04984.9 gi|435851763|ref|YP_007313349.1| - 7.7e-75 252.1 0.0 2.7e-74 250.3 0.0 1.7 1 1 0 1 1 1 1 Phage tail sheath protein CarboxypepD_reg PF13620.1 gi|435851764|ref|YP_007313350.1| - 3.9e-14 52.4 1.2 1.5e-06 28.1 0.0 2.3 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|435851764|ref|YP_007313350.1| - 5.5e-12 45.5 2.4 3.4e-05 23.8 0.3 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) DUF2012 PF09430.5 gi|435851764|ref|YP_007313350.1| - 0.00022 21.0 0.0 0.00047 19.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2012) Cna_B PF05738.8 gi|435851764|ref|YP_007313350.1| - 0.0041 16.8 2.9 0.0042 16.8 0.3 2.2 2 1 0 2 2 2 1 Cna protein B-type domain phage_tail_N PF08400.5 gi|435851764|ref|YP_007313350.1| - 0.048 13.3 1.5 3.3 7.4 0.1 2.9 2 2 1 3 3 3 0 Prophage tail fibre N-terminal PEGA PF08308.6 gi|435851764|ref|YP_007313350.1| - 0.11 12.2 0.2 0.75 9.6 0.0 2.2 2 0 0 2 2 2 0 PEGA domain DUF4255 PF14065.1 gi|435851765|ref|YP_007313351.1| - 7.5e-42 142.7 0.1 8.4e-42 142.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4255) AAA PF00004.24 gi|435851766|ref|YP_007313352.1| - 1.3e-36 125.6 0.2 4.1e-27 94.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|435851766|ref|YP_007313352.1| - 4.8e-09 37.0 0.0 0.007 17.1 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_2 PF07724.9 gi|435851766|ref|YP_007313352.1| - 1.3e-06 28.4 0.2 0.0019 18.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) ABC_tran PF00005.22 gi|435851766|ref|YP_007313352.1| - 5.5e-06 26.7 0.0 0.015 15.5 0.0 2.9 3 0 0 3 3 2 2 ABC transporter AAA_16 PF13191.1 gi|435851766|ref|YP_007313352.1| - 1e-05 25.6 0.1 0.2 11.6 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|435851766|ref|YP_007313352.1| - 1.1e-05 25.5 0.2 0.052 13.6 0.1 3.6 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|435851766|ref|YP_007313352.1| - 8e-05 22.5 0.0 0.52 10.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|435851766|ref|YP_007313352.1| - 8.3e-05 22.4 1.0 0.0017 18.2 0.1 3.0 3 0 0 3 3 3 1 AAA domain Sigma54_activ_2 PF14532.1 gi|435851766|ref|YP_007313352.1| - 0.00026 21.0 0.0 0.73 9.8 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|435851766|ref|YP_007313352.1| - 0.00054 19.6 0.0 0.19 11.5 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_18 PF13238.1 gi|435851766|ref|YP_007313352.1| - 0.0012 19.0 0.1 0.5 10.6 0.0 2.7 2 0 0 2 2 2 1 AAA domain DEAD PF00270.24 gi|435851766|ref|YP_007313352.1| - 0.0026 17.2 0.9 1.6 8.2 0.1 3.2 2 1 0 3 3 3 1 DEAD/DEAH box helicase Mg_chelatase PF01078.16 gi|435851766|ref|YP_007313352.1| - 0.0028 16.8 0.0 0.15 11.1 0.0 2.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|435851766|ref|YP_007313352.1| - 0.0033 16.4 0.0 0.019 14.0 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_29 PF13555.1 gi|435851766|ref|YP_007313352.1| - 0.0035 16.8 0.6 3.5 7.2 0.2 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain T2SE PF00437.15 gi|435851766|ref|YP_007313352.1| - 0.0039 16.1 0.0 1.3 7.8 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|435851766|ref|YP_007313352.1| - 0.013 15.0 0.0 0.51 9.7 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_8 PF12780.2 gi|435851766|ref|YP_007313352.1| - 0.014 14.3 0.2 0.48 9.3 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 Torsin PF06309.6 gi|435851766|ref|YP_007313352.1| - 0.023 14.5 0.1 0.66 9.8 0.0 3.0 3 0 0 3 3 3 0 Torsin Zeta_toxin PF06414.7 gi|435851766|ref|YP_007313352.1| - 0.025 13.6 0.0 1.7 7.6 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin IstB_IS21 PF01695.12 gi|435851766|ref|YP_007313352.1| - 0.033 13.6 0.0 0.56 9.5 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.1 gi|435851766|ref|YP_007313352.1| - 0.04 14.2 11.7 0.85 9.9 0.0 3.9 3 1 0 3 3 3 0 AAA domain AAA_24 PF13479.1 gi|435851766|ref|YP_007313352.1| - 0.049 13.2 0.5 6.3 6.3 0.0 2.9 2 1 1 3 3 3 0 AAA domain Zot PF05707.7 gi|435851766|ref|YP_007313352.1| - 0.049 13.0 1.6 0.49 9.8 0.0 2.6 2 1 1 3 3 3 0 Zonular occludens toxin (Zot) AAA_10 PF12846.2 gi|435851766|ref|YP_007313352.1| - 0.049 13.0 2.4 2.1 7.7 0.0 3.2 3 1 1 4 4 4 0 AAA-like domain AAA_5 PF07728.9 gi|435851766|ref|YP_007313352.1| - 0.065 12.9 0.0 1.3 8.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|435851766|ref|YP_007313352.1| - 0.075 13.2 0.0 2.6 8.2 0.0 2.5 2 0 0 2 2 2 0 RNA helicase DUF927 PF06048.6 gi|435851766|ref|YP_007313352.1| - 0.09 12.0 0.2 4.8 6.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF927) AAA_30 PF13604.1 gi|435851766|ref|YP_007313352.1| - 0.097 12.2 0.1 4 6.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain RGS PF00615.14 gi|435851767|ref|YP_007313353.1| - 0.097 12.7 0.2 1 9.4 0.0 2.0 2 0 0 2 2 2 0 Regulator of G protein signaling domain PEP-utilizers_C PF02896.13 gi|435851768|ref|YP_007313354.1| - 1.5e-101 339.1 0.1 2.7e-101 338.3 0.1 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|435851768|ref|YP_007313354.1| - 6.8e-61 206.1 0.0 1.7e-60 204.8 0.0 1.6 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|435851768|ref|YP_007313354.1| - 7e-23 79.9 1.2 2.1e-22 78.4 0.8 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain polyprenyl_synt PF00348.12 gi|435851769|ref|YP_007313355.1| - 1.7e-69 233.5 0.0 2e-69 233.3 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|435851770|ref|YP_007313356.1| - 2.4e-18 66.5 1.3 8.1e-18 64.7 0.2 2.1 2 1 1 3 3 3 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|435851770|ref|YP_007313356.1| - 4.1e-09 36.1 0.3 9.9e-09 34.8 0.2 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|435851770|ref|YP_007313356.1| - 2.3e-08 33.8 0.8 3.8e-07 29.8 0.2 2.3 1 1 1 2 2 2 1 Beta-lactamase superfamily domain DRTGG PF07085.7 gi|435851770|ref|YP_007313356.1| - 0.072 12.6 0.1 3.4 7.2 0.0 2.6 2 0 0 2 2 2 0 DRTGG domain FMN_dh PF01070.13 gi|435851771|ref|YP_007313357.1| - 4.7e-33 114.4 0.0 1.4e-20 73.4 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|435851771|ref|YP_007313357.1| - 9e-06 24.8 0.4 0.00033 19.6 0.4 2.5 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|435851771|ref|YP_007313357.1| - 0.00044 19.5 0.3 0.00044 19.5 0.2 1.9 3 0 0 3 3 3 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|435851771|ref|YP_007313357.1| - 0.00066 18.7 1.9 0.0036 16.2 0.1 2.3 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|435851771|ref|YP_007313357.1| - 0.023 13.6 1.8 0.047 12.6 1.2 1.6 1 1 0 1 1 1 0 Conserved region in glutamate synthase AA_kinase PF00696.23 gi|435851772|ref|YP_007313358.1| - 2.7e-34 118.8 0.7 3.1e-34 118.6 0.5 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.21 gi|435851773|ref|YP_007313359.1| - 9.6e-17 60.8 2.5 1e-16 60.7 0.6 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|435851773|ref|YP_007313359.1| - 4.2e-16 58.9 0.2 4.2e-16 58.9 0.2 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|435851773|ref|YP_007313359.1| - 0.025 13.8 0.0 0.086 12.1 0.0 1.9 2 0 0 2 2 2 0 Galactokinase galactose-binding signature Peptidase_M66 PF10462.4 gi|435851773|ref|YP_007313359.1| - 0.12 11.2 0.1 0.17 10.7 0.1 1.3 1 0 0 1 1 1 0 Peptidase M66 Memo PF01875.12 gi|435851774|ref|YP_007313360.1| - 8.7e-82 274.0 0.0 9.8e-82 273.9 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|435851774|ref|YP_007313360.1| - 0.00014 20.9 0.0 0.00018 20.5 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase LeuA_dimer PF08502.5 gi|435851774|ref|YP_007313360.1| - 0.039 13.7 0.1 0.056 13.2 0.1 1.3 1 0 0 1 1 1 0 LeuA allosteric (dimerisation) domain Ribosomal_S2 PF00318.15 gi|435851775|ref|YP_007313361.1| - 3e-41 140.9 0.5 4.6e-21 75.0 0.5 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.1 gi|435851775|ref|YP_007313361.1| - 0.011 15.0 0.5 0.022 14.1 0.3 1.5 1 0 0 1 1 1 0 Periplasmic binding protein domain PHP PF02811.14 gi|435851775|ref|YP_007313361.1| - 0.12 12.1 0.0 0.7 9.6 0.0 2.0 2 0 0 2 2 2 0 PHP domain RNA_pol_Rpb6 PF01192.17 gi|435851776|ref|YP_007313362.1| - 3.8e-15 55.3 0.0 4.2e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 NifT PF06988.6 gi|435851776|ref|YP_007313362.1| - 0.074 12.5 0.0 0.095 12.1 0.0 1.2 1 0 0 1 1 1 0 NifT/FixU protein RNA_pol_N PF01194.12 gi|435851777|ref|YP_007313363.1| - 4.1e-29 100.3 0.3 4.4e-29 100.2 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.14 gi|435851778|ref|YP_007313364.1| - 1.9e-34 118.5 0.9 2.2e-34 118.3 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|435851779|ref|YP_007313365.1| - 2.1e-24 85.9 0.0 2.8e-24 85.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 DUF3659 PF12396.3 gi|435851779|ref|YP_007313365.1| - 0.024 14.3 0.3 0.11 12.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Ribosomal_L18e PF00828.14 gi|435851780|ref|YP_007313366.1| - 3.9e-14 53.1 0.2 5e-14 52.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 DUF2240 PF09999.4 gi|435851781|ref|YP_007313367.1| - 2.9e-46 156.4 0.0 3.3e-46 156.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) 2-Hacid_dh_C PF02826.14 gi|435851783|ref|YP_007313369.1| - 1.4e-64 216.5 0.1 2.3e-64 215.8 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|435851783|ref|YP_007313369.1| - 1.2e-38 131.5 1.0 1.2e-38 131.5 0.7 2.1 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.7 gi|435851783|ref|YP_007313369.1| - 4.2e-06 26.2 0.3 1.3e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|435851783|ref|YP_007313369.1| - 6.5e-06 26.0 0.2 2.3e-05 24.2 0.1 1.9 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ACT PF01842.20 gi|435851783|ref|YP_007313369.1| - 0.00084 18.7 0.1 0.003 16.9 0.0 2.0 2 0 0 2 2 2 1 ACT domain F420_oxidored PF03807.12 gi|435851783|ref|YP_007313369.1| - 0.0037 17.6 0.1 0.016 15.6 0.0 2.1 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_C PF03720.10 gi|435851783|ref|YP_007313369.1| - 0.0075 16.4 0.1 0.037 14.1 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain tRNA_SAD PF07973.9 gi|435851784|ref|YP_007313370.1| - 2.6e-13 49.6 0.3 4.3e-13 48.9 0.2 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|435851784|ref|YP_007313370.1| - 4.6e-13 48.3 0.0 6.8e-13 47.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) MFS_1 PF07690.11 gi|435851785|ref|YP_007313371.1| - 4.7e-47 160.3 44.1 2.5e-46 158.0 26.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|435851785|ref|YP_007313371.1| - 0.00053 18.5 34.6 0.001 17.5 4.4 2.9 1 1 1 3 3 3 2 MFS/sugar transport protein DUF2892 PF11127.3 gi|435851786|ref|YP_007313372.1| - 6.1e-15 54.8 0.3 6.4e-15 54.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Pyridox_oxidase PF01243.15 gi|435851787|ref|YP_007313373.1| - 1.3e-06 28.3 0.0 1.8e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_oxidase_2 PF13883.1 gi|435851787|ref|YP_007313373.1| - 0.0095 15.7 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase CitMHS PF03600.11 gi|435851788|ref|YP_007313374.1| - 1.7e-28 99.2 33.4 1.1e-27 96.5 17.2 2.0 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|435851788|ref|YP_007313374.1| - 9e-05 21.5 33.3 0.004 16.0 12.3 3.0 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region Oxidored_q1 PF00361.15 gi|435851790|ref|YP_007313376.1| - 1.1e-68 231.4 19.9 1.1e-68 231.4 13.8 4.1 4 2 1 5 5 5 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|435851790|ref|YP_007313376.1| - 3.2e-18 65.4 7.9 3.2e-18 65.4 5.5 5.2 6 0 0 6 6 6 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|435851790|ref|YP_007313376.1| - 8e-10 38.1 1.1 1e-08 34.5 0.2 3.4 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2585 PF10755.4 gi|435851790|ref|YP_007313376.1| - 0.0001 21.7 3.7 0.038 13.4 0.4 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF2585) MnhB PF04039.8 gi|435851791|ref|YP_007313377.1| - 3.2e-24 85.3 13.2 3.6e-24 85.1 9.1 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF3522 PF12036.3 gi|435851791|ref|YP_007313377.1| - 0.08 12.7 0.3 0.12 12.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3522) LPAM_1 PF08139.7 gi|435851791|ref|YP_007313377.1| - 9.1 6.6 6.8 1.1 9.5 0.4 2.8 3 0 0 3 3 3 0 Prokaryotic membrane lipoprotein lipid attachment site Oxidored_q2 PF00420.19 gi|435851792|ref|YP_007313378.1| - 6.6e-31 105.7 4.4 7.6e-31 105.5 3.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q1 PF00361.15 gi|435851793|ref|YP_007313379.1| - 8e-61 205.6 24.0 8e-61 205.6 16.7 3.1 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|435851793|ref|YP_007313379.1| - 2.1e-06 27.0 6.5 2.1e-06 27.0 4.5 2.5 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein MNHE PF01899.11 gi|435851794|ref|YP_007313380.1| - 8.5e-46 155.4 0.1 9.7e-46 155.2 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit 7TM_GPCR_Srz PF10325.4 gi|435851794|ref|YP_007313380.1| - 0.0041 16.2 1.3 0.0053 15.9 0.9 1.1 1 0 0 1 1 1 1 Serpentine type 7TM GPCR chemoreceptor Srz MrpF_PhaF PF04066.8 gi|435851795|ref|YP_007313381.1| - 1.9e-19 69.6 3.9 1.9e-19 69.6 2.7 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2108 PF09881.4 gi|435851795|ref|YP_007313381.1| - 1.2 9.0 7.3 1.1 9.1 0.2 2.8 3 0 0 3 3 3 0 Predicted membrane protein (DUF2108) PhaG_MnhG_YufB PF03334.9 gi|435851796|ref|YP_007313382.1| - 3.5e-24 84.6 10.9 4.9e-24 84.1 7.5 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Ifi-6-16 PF06140.8 gi|435851796|ref|YP_007313382.1| - 0.13 12.0 2.8 0.9 9.3 2.0 2.1 1 1 0 1 1 1 0 Interferon-induced 6-16 family DUF2976 PF11190.3 gi|435851796|ref|YP_007313382.1| - 0.21 11.1 5.0 0.64 9.5 3.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2976) DUF973 PF06157.6 gi|435851796|ref|YP_007313382.1| - 0.37 9.7 9.2 0.43 9.4 6.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) RuBisCO_large PF00016.15 gi|435851797|ref|YP_007313383.1| - 2.3e-58 197.5 0.0 2.9e-58 197.1 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|435851797|ref|YP_007313383.1| - 2.3e-13 49.9 0.0 1.3e-12 47.5 0.0 2.0 2 1 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain MtrH PF02007.13 gi|435851797|ref|YP_007313383.1| - 0.034 13.1 0.0 0.054 12.4 0.0 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase MtrH subunit PMM PF03332.8 gi|435851797|ref|YP_007313383.1| - 0.08 12.4 0.1 0.43 10.1 0.0 2.0 1 1 1 2 2 2 0 Eukaryotic phosphomannomutase Sua5_yciO_yrdC PF01300.13 gi|435851798|ref|YP_007313384.1| - 2.9e-58 196.0 0.1 4.1e-58 195.5 0.1 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|435851798|ref|YP_007313384.1| - 1.3e-28 99.5 0.0 2e-28 98.9 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Gly_reductase PF09338.6 gi|435851798|ref|YP_007313384.1| - 0.093 10.8 0.0 0.13 10.3 0.0 1.1 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase component B subunits Holin_BlyA PF05102.7 gi|435851799|ref|YP_007313385.1| - 1.9 8.2 4.5 4.1 7.1 0.0 2.4 2 1 1 3 3 3 0 holin, BlyA family Transketolase_C PF02780.15 gi|435851800|ref|YP_007313386.1| - 0.024 14.5 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 Transketolase, C-terminal domain PolC_DP2 PF03833.8 gi|435851801|ref|YP_007313387.1| - 0 1221.0 0.0 0 1219.5 0.0 1.6 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 TerY-C PF15616.1 gi|435851801|ref|YP_007313387.1| - 0.081 12.8 9.8 0.035 14.0 3.8 2.3 2 0 0 2 2 2 0 TerY-C metal binding domain DUF2072 PF09845.4 gi|435851801|ref|YP_007313387.1| - 0.087 12.7 0.1 0.087 12.7 0.1 3.2 3 0 0 3 3 3 0 Zn-ribbon containing protein (DUF2072) DUF512 PF04459.7 gi|435851802|ref|YP_007313388.1| - 6.9e-22 77.5 0.0 9.4e-22 77.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|435851802|ref|YP_007313388.1| - 5.2e-12 46.2 6.6 3.6e-10 40.2 4.5 2.7 1 1 0 1 1 1 1 Radical SAM superfamily MCR_beta PF02241.13 gi|435851803|ref|YP_007313389.1| - 5e-127 422.4 4.3 8.7e-127 421.6 3.0 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|435851803|ref|YP_007313389.1| - 1.1e-79 266.1 6.5 1.6e-79 265.5 4.5 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.9 gi|435851804|ref|YP_007313390.1| - 1.6e-48 164.1 0.0 1.9e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_C PF04609.7 gi|435851805|ref|YP_007313391.1| - 8.7e-41 139.4 8.1 2.3e-37 128.2 0.9 3.0 1 1 2 3 3 3 3 Methyl-coenzyme M reductase operon protein C DUF1758 PF05585.7 gi|435851805|ref|YP_007313391.1| - 0.051 13.1 0.1 0.091 12.3 0.0 1.3 1 1 0 1 1 1 0 Putative peptidase (DUF1758) DUF2404 PF10296.4 gi|435851805|ref|YP_007313391.1| - 0.089 12.9 0.1 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative integral membrane protein conserved region (DUF2404) MCR_gamma PF02240.11 gi|435851806|ref|YP_007313392.1| - 4.8e-120 399.2 0.9 5.4e-120 399.1 0.6 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.10 gi|435851807|ref|YP_007313393.1| - 1.2e-138 460.7 0.5 1.6e-138 460.3 0.3 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|435851807|ref|YP_007313393.1| - 1.8e-66 221.9 5.1 5.2e-66 220.4 3.6 1.8 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain Hydantoinase_A PF01968.13 gi|435851808|ref|YP_007313394.1| - 1.4e-79 267.2 0.2 3.4e-77 259.4 0.0 3.0 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|435851808|ref|YP_007313394.1| - 1.5e-42 145.0 3.6 3.5e-39 134.1 0.3 2.9 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|435851808|ref|YP_007313394.1| - 2.5e-07 29.4 1.8 0.0034 15.7 0.2 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|435851808|ref|YP_007313394.1| - 0.0044 16.3 0.1 0.74 9.0 0.0 2.8 2 1 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.6 gi|435851808|ref|YP_007313394.1| - 0.044 12.7 0.4 0.21 10.4 0.1 2.3 2 1 0 3 3 3 0 StbA protein EPSP_synthase PF00275.15 gi|435851809|ref|YP_007313395.1| - 3e-109 365.2 1.5 3.6e-109 364.9 1.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DUF488 PF04343.8 gi|435851810|ref|YP_007313396.1| - 2.8e-19 69.6 0.0 3.8e-18 66.0 0.0 2.1 1 1 0 1 1 1 1 Protein of unknown function, DUF488 Peptidase_M48 PF01435.13 gi|435851811|ref|YP_007313397.1| - 6.4e-38 130.5 0.2 8e-38 130.2 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|435851811|ref|YP_007313397.1| - 0.00032 19.7 0.0 0.00073 18.5 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|435851811|ref|YP_007313397.1| - 0.013 15.1 0.1 0.017 14.7 0.1 1.2 1 0 0 1 1 1 0 SprT-like family Yip1 PF04893.12 gi|435851811|ref|YP_007313397.1| - 0.016 14.6 0.6 0.016 14.6 0.4 2.2 2 0 0 2 2 2 0 Yip1 domain BSP PF04450.7 gi|435851811|ref|YP_007313397.1| - 0.068 12.6 0.1 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria DUF1282 PF06930.7 gi|435851811|ref|YP_007313397.1| - 1.6 8.3 9.1 0.32 10.6 1.7 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1282) Angiomotin_C PF12240.3 gi|435851812|ref|YP_007313398.1| - 0.018 14.5 0.8 0.021 14.3 0.5 1.1 1 0 0 1 1 1 0 Angiomotin C terminal DUF4098 PF13345.1 gi|435851812|ref|YP_007313398.1| - 0.034 14.0 0.4 0.044 13.7 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4098) DUF4055 PF13264.1 gi|435851812|ref|YP_007313398.1| - 0.091 12.8 0.4 0.1 12.6 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4055) AAA_17 PF13207.1 gi|435851813|ref|YP_007313399.1| - 0.68 10.7 5.2 1.9 9.3 3.5 1.9 1 1 0 1 1 1 0 AAA domain CorA PF01544.13 gi|435851813|ref|YP_007313399.1| - 6.9 5.6 13.8 1.7 7.5 3.0 2.6 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein DUF1065 PF06358.6 gi|435851814|ref|YP_007313400.1| - 0.069 12.8 0.0 0.079 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1065) HTH_24 PF13412.1 gi|435851815|ref|YP_007313401.1| - 8.8e-06 25.0 0.4 1.6e-05 24.1 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Gram_pos_anchor PF00746.16 gi|435851815|ref|YP_007313401.1| - 0.0013 18.4 2.5 0.0023 17.6 1.8 1.4 1 0 0 1 1 1 1 Gram positive anchor MarR_2 PF12802.2 gi|435851815|ref|YP_007313401.1| - 0.0014 18.2 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|435851815|ref|YP_007313401.1| - 0.0029 17.2 0.0 0.0049 16.5 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|435851815|ref|YP_007313401.1| - 0.016 14.8 0.2 0.032 13.9 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FeoC PF09012.5 gi|435851815|ref|YP_007313401.1| - 0.018 14.7 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator IncA PF04156.9 gi|435851815|ref|YP_007313401.1| - 0.029 13.9 0.1 0.043 13.3 0.1 1.3 1 0 0 1 1 1 0 IncA protein HTH_27 PF13463.1 gi|435851815|ref|YP_007313401.1| - 0.048 13.9 0.0 0.099 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Pro-kuma_activ PF09286.6 gi|435851815|ref|YP_007313401.1| - 0.059 13.3 0.0 0.24 11.4 0.0 1.8 1 1 1 2 2 2 0 Pro-kumamolisin, activation domain DUF4366 PF14283.1 gi|435851815|ref|YP_007313401.1| - 0.062 12.7 0.0 0.078 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Penicillinase_R PF03965.11 gi|435851815|ref|YP_007313401.1| - 0.096 12.7 0.1 0.2 11.7 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor HMA PF00403.21 gi|435851816|ref|YP_007313402.1| - 0.12 12.5 0.1 25 5.1 0.0 2.6 2 0 0 2 2 2 0 Heavy-metal-associated domain Homoserine_dh PF00742.14 gi|435851817|ref|YP_007313403.1| - 5.5e-59 198.8 0.8 9.3e-59 198.0 0.2 1.6 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|435851817|ref|YP_007313403.1| - 2.9e-11 43.7 0.4 8.6e-11 42.2 0.3 1.9 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|435851817|ref|YP_007313403.1| - 0.0011 18.6 0.2 0.0022 17.5 0.1 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Saccharop_dh PF03435.13 gi|435851817|ref|YP_007313403.1| - 0.0022 17.0 0.1 0.0036 16.3 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|435851817|ref|YP_007313403.1| - 0.028 14.0 0.5 0.056 13.0 0.4 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|435851817|ref|YP_007313403.1| - 0.035 14.1 0.6 0.08 12.9 0.4 1.6 1 0 0 1 1 1 0 TrkA-N domain DUF3564 PF12087.3 gi|435851817|ref|YP_007313403.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3564) DNA_ligase_A_M PF01068.16 gi|435851818|ref|YP_007313404.1| - 2.6e-57 193.4 0.0 4.2e-57 192.7 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|435851818|ref|YP_007313404.1| - 4.8e-41 140.4 0.0 8.6e-41 139.6 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|435851818|ref|YP_007313404.1| - 2e-19 69.8 0.0 5.6e-19 68.3 0.0 1.8 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|435851818|ref|YP_007313404.1| - 0.0037 16.9 0.0 0.14 11.7 0.0 2.7 1 1 0 1 1 1 1 mRNA capping enzyme, catalytic domain Cupredoxin_1 PF13473.1 gi|435851819|ref|YP_007313405.1| - 8.8e-07 28.7 0.0 1.1e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|435851819|ref|YP_007313405.1| - 0.00079 19.6 0.3 0.05 13.8 0.2 2.3 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family MFS_1 PF07690.11 gi|435851820|ref|YP_007313406.1| - 1.1e-63 215.1 38.2 6.3e-34 117.2 8.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|435851820|ref|YP_007313406.1| - 4.2e-11 42.0 36.6 1.2e-07 30.6 8.9 3.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|435851820|ref|YP_007313406.1| - 6.6e-06 24.5 18.9 0.0016 16.6 1.8 2.1 1 1 1 2 2 2 2 Transmembrane secretion effector DUF4271 PF14093.1 gi|435851820|ref|YP_007313406.1| - 0.01 15.5 1.7 0.01 15.5 1.2 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4271) MFS_1_like PF12832.2 gi|435851820|ref|YP_007313406.1| - 0.29 10.9 0.0 0.29 10.9 0.0 3.4 4 0 0 4 4 4 0 MFS_1 like family DUF4131 PF13567.1 gi|435851820|ref|YP_007313406.1| - 1.2 8.5 11.7 0.14 11.5 1.2 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) Bacteriocin_IIc PF10439.4 gi|435851820|ref|YP_007313406.1| - 9 6.4 17.2 4.2 7.5 0.9 2.9 2 1 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide DUF4117 PF13491.1 gi|435851820|ref|YP_007313406.1| - 10 5.5 30.0 0.16 11.3 6.4 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4117) PmbA_TldD PF01523.11 gi|435851821|ref|YP_007313407.1| - 1.4e-63 214.8 0.5 2.1e-63 214.3 0.3 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|435851822|ref|YP_007313408.1| - 6.8e-72 242.2 0.5 9.4e-72 241.7 0.4 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Lon_C PF05362.8 gi|435851823|ref|YP_007313409.1| - 1.4e-32 112.6 3.4 2.3e-32 111.9 2.4 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|435851823|ref|YP_007313409.1| - 6.3e-25 87.8 0.1 6.5e-17 61.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|435851823|ref|YP_007313409.1| - 1.3e-16 60.3 0.1 4.6e-10 38.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|435851823|ref|YP_007313409.1| - 5.6e-15 55.2 0.2 1.6e-08 34.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.9 gi|435851823|ref|YP_007313409.1| - 4.7e-12 45.7 0.1 0.00018 21.2 0.0 3.8 4 0 0 4 4 4 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|435851823|ref|YP_007313409.1| - 1.5e-10 40.6 0.6 3.3e-10 39.5 0.4 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|435851823|ref|YP_007313409.1| - 4.1e-08 33.5 0.0 0.0092 16.1 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|435851823|ref|YP_007313409.1| - 9e-06 25.8 0.0 0.0031 17.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|435851823|ref|YP_007313409.1| - 2.1e-05 24.6 0.0 0.086 12.8 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|435851823|ref|YP_007313409.1| - 2.3e-05 23.3 6.4 0.055 12.2 0.0 4.0 5 0 0 5 5 5 2 MCM2/3/5 family AAA_3 PF07726.6 gi|435851823|ref|YP_007313409.1| - 7.5e-05 22.3 0.2 0.28 10.7 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|435851823|ref|YP_007313409.1| - 0.00013 21.0 0.0 0.033 13.2 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|435851823|ref|YP_007313409.1| - 0.00014 21.5 0.0 0.00054 19.6 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain AAA_18 PF13238.1 gi|435851823|ref|YP_007313409.1| - 0.00016 22.0 0.0 0.00044 20.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|435851823|ref|YP_007313409.1| - 0.0017 18.4 0.2 0.032 14.2 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain PhoH PF02562.11 gi|435851823|ref|YP_007313409.1| - 0.003 16.8 0.1 0.01 15.1 0.0 1.8 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.1 gi|435851823|ref|YP_007313409.1| - 0.004 16.7 1.2 0.0071 15.9 0.0 2.0 3 0 0 3 3 2 1 AAA domain Parvo_NS1 PF01057.12 gi|435851823|ref|YP_007313409.1| - 0.0055 15.6 0.0 0.01 14.7 0.0 1.3 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 L_lac_phage_MSP PF06488.6 gi|435851823|ref|YP_007313409.1| - 0.0059 15.6 0.5 0.0093 15.0 0.3 1.3 1 0 0 1 1 1 1 Lactococcus lactis bacteriophage major structural protein AAA_33 PF13671.1 gi|435851823|ref|YP_007313409.1| - 0.013 15.3 0.0 0.035 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|435851823|ref|YP_007313409.1| - 0.017 14.5 0.0 0.052 12.9 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.4 gi|435851823|ref|YP_007313409.1| - 0.019 13.5 0.0 0.038 12.6 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.1 gi|435851823|ref|YP_007313409.1| - 0.028 15.2 0.0 0.1 13.3 0.0 2.1 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|435851823|ref|YP_007313409.1| - 0.028 14.6 0.0 0.11 12.7 0.0 2.0 2 0 0 2 2 2 0 ABC transporter DUF815 PF05673.8 gi|435851823|ref|YP_007313409.1| - 0.034 13.0 0.0 0.11 11.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|435851823|ref|YP_007313409.1| - 0.071 13.0 0.0 0.2 11.5 0.0 1.9 2 0 0 2 2 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|435851823|ref|YP_007313409.1| - 0.079 12.4 1.1 0.21 11.0 0.0 2.2 2 1 0 2 2 2 0 FtsK/SpoIIIE family DUF2075 PF09848.4 gi|435851823|ref|YP_007313409.1| - 0.085 11.8 0.0 0.17 10.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.2 gi|435851823|ref|YP_007313409.1| - 0.092 12.1 0.0 0.78 9.1 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain NACHT PF05729.7 gi|435851823|ref|YP_007313409.1| - 0.12 12.0 0.1 0.45 10.1 0.0 2.0 3 0 0 3 3 1 0 NACHT domain Rubrerythrin PF02915.12 gi|435851825|ref|YP_007313411.1| - 8.6e-25 87.6 6.2 1.3e-23 83.8 4.2 2.1 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|435851825|ref|YP_007313411.1| - 5.1e-05 23.0 0.9 6.9e-05 22.6 0.6 1.4 1 1 0 1 1 1 1 Ferritin-like domain DZR PF12773.2 gi|435851825|ref|YP_007313411.1| - 0.02 14.7 0.9 0.032 14.0 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ogr_Delta PF04606.7 gi|435851825|ref|YP_007313411.1| - 0.024 14.2 1.2 3.9 7.2 0.0 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Prok-RING_4 PF14447.1 gi|435851825|ref|YP_007313411.1| - 0.037 13.5 0.7 0.066 12.7 0.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 zf-C3HC4_3 PF13920.1 gi|435851825|ref|YP_007313411.1| - 0.069 12.8 0.5 0.1 12.2 0.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Rubredoxin PF00301.15 gi|435851825|ref|YP_007313411.1| - 0.1 12.4 4.9 2.6 7.9 0.5 2.4 1 1 1 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|435851825|ref|YP_007313411.1| - 0.1 11.8 5.8 0.18 11.0 4.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|435851825|ref|YP_007313411.1| - 0.11 12.2 0.3 0.11 12.2 0.2 2.4 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Ribosomal_L37e PF01907.14 gi|435851825|ref|YP_007313411.1| - 0.12 12.2 0.4 0.21 11.3 0.3 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e Rad50_zn_hook PF04423.9 gi|435851825|ref|YP_007313411.1| - 0.16 11.4 2.1 7.1 6.1 0.2 2.9 3 0 0 3 3 3 0 Rad50 zinc hook motif OrfB_Zn_ribbon PF07282.6 gi|435851825|ref|YP_007313411.1| - 0.19 11.4 1.2 0.36 10.5 0.8 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-Mss51 PF13824.1 gi|435851825|ref|YP_007313411.1| - 0.29 11.0 3.5 0.85 9.5 2.6 1.6 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 A2L_zn_ribbon PF08792.5 gi|435851825|ref|YP_007313411.1| - 0.65 9.5 4.1 5 6.7 2.8 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|435851825|ref|YP_007313411.1| - 0.67 9.9 4.3 6.4 6.8 3.0 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|435851825|ref|YP_007313411.1| - 2.1 7.9 5.3 5.1 6.7 3.6 1.7 1 1 1 2 2 2 0 zinc-ribbon domain LMWPc PF01451.16 gi|435851826|ref|YP_007313412.1| - 3.7e-23 82.3 0.0 4.4e-23 82.1 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase PfkB PF00294.19 gi|435851827|ref|YP_007313413.1| - 2.9e-50 171.1 0.0 3.5e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase FTHFS PF01268.14 gi|435851827|ref|YP_007313413.1| - 0.11 10.4 0.0 0.15 10.0 0.0 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase DUF555 PF04475.7 gi|435851828|ref|YP_007313414.1| - 1.5e-49 166.1 0.1 1.8e-49 165.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) UPF0081 PF03652.10 gi|435851828|ref|YP_007313414.1| - 0.025 14.6 0.0 0.032 14.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) DUF357 PF04010.8 gi|435851829|ref|YP_007313415.1| - 1.1e-28 98.7 0.2 1.3e-28 98.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF87 PF01935.12 gi|435851830|ref|YP_007313416.1| - 7.2e-39 133.9 0.1 1.1e-38 133.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|435851830|ref|YP_007313416.1| - 2e-24 86.5 0.0 1.3e-23 83.9 0.0 1.9 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|435851830|ref|YP_007313416.1| - 7.5e-05 21.5 0.0 0.0095 14.5 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|435851830|ref|YP_007313416.1| - 8.5e-05 21.0 0.0 0.093 11.0 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|435851830|ref|YP_007313416.1| - 0.00053 19.5 0.0 0.036 13.5 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family HAS-barrel PF09378.5 gi|435851830|ref|YP_007313416.1| - 0.0024 17.7 0.3 0.0085 15.9 0.1 2.1 2 0 0 2 2 2 1 HAS barrel domain TraG-D_C PF12696.2 gi|435851830|ref|YP_007313416.1| - 0.018 14.9 0.0 0.054 13.3 0.0 1.8 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG Zot PF05707.7 gi|435851830|ref|YP_007313416.1| - 0.065 12.6 0.0 0.53 9.7 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) TP_methylase PF00590.15 gi|435851831|ref|YP_007313417.1| - 8.2e-16 58.3 0.0 1e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Cpn60_TCP1 PF00118.19 gi|435851832|ref|YP_007313418.1| - 5.5e-155 516.6 18.1 6.3e-155 516.4 12.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF2119 PF09892.4 gi|435851833|ref|YP_007313419.1| - 1.8e-65 219.8 0.0 2.2e-65 219.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) Chordopox_G2 PF05796.7 gi|435851833|ref|YP_007313419.1| - 0.016 14.3 0.2 0.026 13.6 0.1 1.3 1 0 0 1 1 1 0 Chordopoxvirus protein G2 Ribosomal_S8 PF00410.14 gi|435851833|ref|YP_007313419.1| - 0.028 14.2 0.7 2.1 8.2 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein S8 S4 PF01479.20 gi|435851834|ref|YP_007313420.1| - 2.6e-11 42.7 0.1 5.3e-11 41.7 0.0 1.6 1 0 0 1 1 1 1 S4 domain FtsJ PF01728.14 gi|435851834|ref|YP_007313420.1| - 1.5e-08 34.8 0.0 2.8e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|435851834|ref|YP_007313420.1| - 1.4e-07 31.2 0.0 2e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|435851834|ref|YP_007313420.1| - 5.2e-07 28.8 0.0 6.7e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_18 PF12847.2 gi|435851834|ref|YP_007313420.1| - 2.3e-06 28.1 0.0 3.8e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435851834|ref|YP_007313420.1| - 2e-05 24.5 0.0 3.6e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|435851834|ref|YP_007313420.1| - 0.0014 18.3 0.0 0.002 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|435851834|ref|YP_007313420.1| - 0.046 12.7 0.0 3.9 6.4 0.0 2.2 1 1 1 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.1 gi|435851834|ref|YP_007313420.1| - 0.056 14.2 0.0 0.1 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain SBF PF01758.11 gi|435851835|ref|YP_007313421.1| - 3.8e-46 156.8 20.1 6.6e-46 156.0 13.9 1.4 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|435851835|ref|YP_007313421.1| - 2.8e-16 59.4 21.1 3.3e-16 59.2 14.7 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.13 gi|435851835|ref|YP_007313421.1| - 0.0041 15.4 6.6 0.0041 15.4 4.6 2.4 1 1 0 2 2 2 1 Membrane transport protein HAD_2 PF13419.1 gi|435851836|ref|YP_007313422.1| - 1.7e-28 100.0 0.0 2e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|435851836|ref|YP_007313422.1| - 4.1e-10 40.4 0.1 1.8e-09 38.3 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|435851836|ref|YP_007313422.1| - 2.8e-07 30.1 0.0 5.2e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.13 gi|435851836|ref|YP_007313422.1| - 9.5e-07 28.6 0.0 2.8e-05 23.8 0.0 2.1 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase HAD PF12710.2 gi|435851836|ref|YP_007313422.1| - 0.00016 21.9 0.0 0.00031 20.9 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Methyltransf_31 PF13847.1 gi|435851836|ref|YP_007313422.1| - 0.14 11.7 0.5 0.6 9.6 0.0 2.3 2 1 1 3 3 3 0 Methyltransferase domain Oxidored_FMN PF00724.15 gi|435851837|ref|YP_007313423.1| - 6.3e-76 255.5 0.0 7.5e-76 255.3 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|435851837|ref|YP_007313423.1| - 6.5e-05 22.3 0.0 0.00016 20.9 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein Dus PF01207.12 gi|435851837|ref|YP_007313423.1| - 0.00034 19.5 0.0 0.00088 18.1 0.0 1.7 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) HMGL-like PF00682.14 gi|435851837|ref|YP_007313423.1| - 0.016 14.9 0.1 0.041 13.5 0.0 1.7 2 0 0 2 2 2 0 HMGL-like TMP-TENI PF02581.12 gi|435851837|ref|YP_007313423.1| - 0.061 12.4 0.0 0.12 11.5 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI FMN_red PF03358.10 gi|435851838|ref|YP_007313424.1| - 3.5e-24 85.0 0.0 4.3e-24 84.7 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|435851838|ref|YP_007313424.1| - 7e-14 51.8 0.0 9e-14 51.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|435851838|ref|YP_007313424.1| - 0.0017 18.3 0.0 0.0032 17.4 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain HxlR PF01638.12 gi|435851839|ref|YP_007313425.1| - 3.2e-32 110.0 0.1 3.8e-32 109.7 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|435851839|ref|YP_007313425.1| - 0.046 13.4 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.17 gi|435851839|ref|YP_007313425.1| - 0.064 12.9 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|435851839|ref|YP_007313425.1| - 0.1 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Flavodoxin_3 PF12641.2 gi|435851840|ref|YP_007313426.1| - 6.1e-21 74.5 0.0 7.3e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|435851840|ref|YP_007313426.1| - 3.3e-11 43.3 0.0 4.6e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|435851840|ref|YP_007313426.1| - 2e-10 40.2 0.2 2.7e-05 23.5 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_1 PF00258.20 gi|435851840|ref|YP_007313426.1| - 6.6e-05 22.9 0.0 0.0001 22.2 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin Plasmod_dom_1 PF09715.5 gi|435851841|ref|YP_007313427.1| - 0.16 11.8 0.9 0.3 11.0 0.6 1.4 1 0 0 1 1 1 0 Plasmodium protein of unknown function (Plasmod_dom_1) Radical_SAM PF04055.16 gi|435851842|ref|YP_007313428.1| - 2e-13 50.8 0.5 3.7e-13 49.9 0.3 1.5 1 1 0 1 1 1 1 Radical SAM superfamily G5 PF07501.7 gi|435851842|ref|YP_007313428.1| - 0.03 14.2 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 G5 domain Acetyltransf_3 PF13302.1 gi|435851843|ref|YP_007313429.1| - 2.6e-25 89.2 0.0 3.1e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|435851843|ref|YP_007313429.1| - 1.7e-13 50.8 0.1 1.9e-13 50.6 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|435851843|ref|YP_007313429.1| - 1.3e-08 34.7 0.3 1.9e-08 34.2 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|435851843|ref|YP_007313429.1| - 5.2e-07 29.6 0.0 6.2e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|435851843|ref|YP_007313429.1| - 0.00033 20.7 0.0 0.00041 20.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|435851843|ref|YP_007313429.1| - 0.0011 18.6 0.1 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|435851843|ref|YP_007313429.1| - 0.013 15.6 0.2 0.02 15.0 0.2 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF2637 PF10935.3 gi|435851843|ref|YP_007313429.1| - 0.15 11.9 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2637) Na_Ala_symp PF01235.12 gi|435851844|ref|YP_007313430.1| - 0.014 14.0 1.3 0.014 13.9 0.9 1.0 1 0 0 1 1 1 0 Sodium:alanine symporter family DUF4079 PF13301.1 gi|435851844|ref|YP_007313430.1| - 0.015 15.2 0.1 0.017 15.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) Virul_fac_BrkB PF03631.10 gi|435851844|ref|YP_007313430.1| - 0.02 14.2 1.3 0.023 14.0 0.9 1.0 1 0 0 1 1 1 0 Virulence factor BrkB DUF1516 PF07457.6 gi|435851844|ref|YP_007313430.1| - 0.045 13.8 1.5 0.051 13.6 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1516) Fun_ATP-synt_8 PF05933.8 gi|435851844|ref|YP_007313430.1| - 0.094 12.7 0.2 0.094 12.7 0.2 1.6 2 0 0 2 2 2 0 Fungal ATP synthase protein 8 (A6L) FtsX PF02687.16 gi|435851844|ref|YP_007313430.1| - 0.15 11.8 5.2 0.18 11.5 3.6 1.1 1 0 0 1 1 1 0 FtsX-like permease family DUF454 PF04304.8 gi|435851844|ref|YP_007313430.1| - 0.64 10.0 7.0 0.28 11.2 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF454) Hydrolase PF00702.21 gi|435851845|ref|YP_007313431.1| - 2.4e-58 198.0 8.0 5.8e-58 196.8 5.6 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|435851845|ref|YP_007313431.1| - 2.9e-57 193.3 4.3 2.9e-57 193.3 3.0 1.7 2 0 0 2 2 2 1 E1-E2 ATPase HMA PF00403.21 gi|435851845|ref|YP_007313431.1| - 1.4e-41 140.4 8.3 5.6e-15 55.2 1.0 3.7 3 0 0 3 3 3 3 Heavy-metal-associated domain HAD PF12710.2 gi|435851845|ref|YP_007313431.1| - 1.6e-19 70.8 0.0 5.5e-19 69.0 0.0 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|435851845|ref|YP_007313431.1| - 3.2e-08 33.4 4.4 2.4e-05 24.0 0.5 2.9 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|435851845|ref|YP_007313431.1| - 0.011 15.5 0.0 0.14 12.0 0.0 2.6 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase YscJ_FliF PF01514.12 gi|435851845|ref|YP_007313431.1| - 0.013 14.6 2.1 1.3 8.1 0.0 3.2 3 0 0 3 3 3 0 Secretory protein of YscJ/FliF family GARS_C PF02843.11 gi|435851845|ref|YP_007313431.1| - 0.016 15.3 0.8 0.1 12.7 0.2 2.6 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, C domain Tox-PL-2 PF15643.1 gi|435851845|ref|YP_007313431.1| - 0.062 13.2 0.3 17 5.4 0.0 3.1 3 0 0 3 3 3 0 Papain fold toxin 2 DUF2575 PF10837.3 gi|435851845|ref|YP_007313431.1| - 0.11 12.6 0.1 0.27 11.3 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2575) Thioredoxin_3 PF13192.1 gi|435851845|ref|YP_007313431.1| - 2 8.2 5.8 1.8 8.4 0.1 3.6 4 0 0 4 4 4 0 Thioredoxin domain HMA PF00403.21 gi|435851846|ref|YP_007313432.1| - 1.7e-20 72.8 3.5 1.9e-20 72.7 2.4 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Lumazine_bd PF12870.2 gi|435851846|ref|YP_007313432.1| - 0.057 13.4 1.3 0.064 13.3 0.9 1.1 1 0 0 1 1 1 0 Lumazine-binding domain Thioredoxin PF00085.15 gi|435851846|ref|YP_007313432.1| - 0.12 12.1 1.2 0.19 11.4 0.8 1.5 1 1 0 1 1 1 0 Thioredoxin Thioredoxin_3 PF13192.1 gi|435851846|ref|YP_007313432.1| - 0.44 10.3 2.7 0.73 9.6 1.9 1.4 1 1 0 1 1 1 0 Thioredoxin domain Mrr_cat PF04471.7 gi|435851847|ref|YP_007313433.1| - 2.3e-28 98.2 0.0 4.5e-28 97.3 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease bPH_3 PF14470.1 gi|435851847|ref|YP_007313433.1| - 4.9e-05 23.5 0.1 0.38 11.0 0.0 2.4 1 1 1 2 2 2 2 Bacterial PH domain Thioredoxin PF00085.15 gi|435851848|ref|YP_007313434.1| - 7.6e-26 89.8 0.0 9.7e-26 89.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|435851848|ref|YP_007313434.1| - 1.1e-07 32.0 0.0 1.3e-06 28.5 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|435851848|ref|YP_007313434.1| - 2.8e-05 24.1 0.1 0.008 16.2 0.0 2.4 1 1 1 2 2 2 2 Thioredoxin-like HyaE PF07449.6 gi|435851848|ref|YP_007313434.1| - 0.0016 18.3 0.0 0.0075 16.1 0.0 1.8 2 0 0 2 2 2 1 Hydrogenase-1 expression protein HyaE Thioredoxin_9 PF14595.1 gi|435851848|ref|YP_007313434.1| - 0.0017 17.9 0.1 0.0021 17.6 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|435851848|ref|YP_007313434.1| - 0.018 14.8 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin domain Thioredoxin_6 PF13848.1 gi|435851848|ref|YP_007313434.1| - 0.065 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain DUF2114 PF09887.4 gi|435851849|ref|YP_007313435.1| - 7.9e-221 733.1 6.2 9.5e-221 732.8 4.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) DNA_pol_B_thumb PF14791.1 gi|435851850|ref|YP_007313436.1| - 1.8e-22 78.7 0.0 5.5e-22 77.2 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|435851850|ref|YP_007313436.1| - 3.6e-22 78.3 3.0 5.6e-20 71.2 0.7 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.14 gi|435851850|ref|YP_007313436.1| - 1.3e-17 64.1 0.2 4.6e-17 62.3 0.1 2.0 2 0 0 2 2 2 1 PHP domain HHH_5 PF14520.1 gi|435851850|ref|YP_007313436.1| - 4.3e-08 33.2 1.2 0.00045 20.3 0.1 3.0 2 1 2 4 4 4 3 Helix-hairpin-helix domain HHH PF00633.18 gi|435851850|ref|YP_007313436.1| - 2e-06 27.1 1.8 0.0091 15.6 0.0 3.6 4 0 0 4 4 4 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|435851850|ref|YP_007313436.1| - 7e-05 22.8 0.2 0.00042 20.3 0.0 2.2 2 0 0 2 2 2 1 DNA polymerase beta palm HHH_2 PF12826.2 gi|435851850|ref|YP_007313436.1| - 0.001 18.8 1.6 1.8 8.5 0.0 4.4 4 1 2 6 6 6 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|435851850|ref|YP_007313436.1| - 0.0026 17.7 0.1 13 6.0 0.0 4.1 3 0 0 3 3 3 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|435851850|ref|YP_007313436.1| - 0.021 14.3 0.0 0.064 12.8 0.0 1.9 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Peripla_BP_6 PF13458.1 gi|435851850|ref|YP_007313436.1| - 0.12 11.7 0.0 7.2 5.8 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein DREV PF05219.7 gi|435851850|ref|YP_007313436.1| - 0.14 11.0 0.0 0.28 10.0 0.0 1.4 1 0 0 1 1 1 0 DREV methyltransferase dTMP_synthase PF02593.9 gi|435851851|ref|YP_007313437.1| - 1.2e-63 214.3 0.0 1.4e-63 214.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DapB_N PF01113.15 gi|435851851|ref|YP_007313437.1| - 0.024 14.5 0.0 0.077 12.9 0.0 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CoA_binding_2 PF13380.1 gi|435851851|ref|YP_007313437.1| - 0.094 12.8 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain E1-E2_ATPase PF00122.15 gi|435851852|ref|YP_007313438.1| - 8.6e-72 240.8 7.6 4.5e-71 238.5 4.4 2.5 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|435851852|ref|YP_007313438.1| - 3.3e-40 137.5 11.8 8.4e-40 136.2 5.4 2.5 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|435851852|ref|YP_007313438.1| - 4.6e-35 121.9 3.0 3.9e-34 118.9 2.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|435851852|ref|YP_007313438.1| - 6.6e-18 63.9 0.2 4.1e-17 61.4 0.0 2.4 2 1 1 3 3 3 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|435851852|ref|YP_007313438.1| - 1.1e-17 64.7 0.1 3.4e-17 63.2 0.0 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|435851852|ref|YP_007313438.1| - 1.4e-13 50.6 0.0 3.1e-13 49.4 0.0 1.7 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|435851852|ref|YP_007313438.1| - 9.1e-09 35.2 0.4 2.8e-05 23.8 0.2 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|435851852|ref|YP_007313438.1| - 0.031 14.4 0.0 0.17 12.0 0.0 2.0 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Thymidylate_kin PF02223.12 gi|435851853|ref|YP_007313439.1| - 3.6e-44 150.3 0.0 4.3e-44 150.1 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|435851853|ref|YP_007313439.1| - 1.2e-07 32.1 0.0 2.3e-07 31.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|435851853|ref|YP_007313439.1| - 7.9e-06 26.6 0.2 3.5e-05 24.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|435851853|ref|YP_007313439.1| - 1e-05 25.4 0.0 1.9e-05 24.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|435851853|ref|YP_007313439.1| - 6.7e-05 22.9 0.0 8.3e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain CPT PF07931.7 gi|435851853|ref|YP_007313439.1| - 0.0045 16.6 0.0 0.03 13.9 0.0 2.1 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein APS_kinase PF01583.15 gi|435851853|ref|YP_007313439.1| - 0.07 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase ABC_tran PF00005.22 gi|435851853|ref|YP_007313439.1| - 0.12 12.7 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter His_biosynth PF00977.16 gi|435851855|ref|YP_007313441.1| - 3.8e-36 124.4 0.3 4.3e-36 124.3 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|435851855|ref|YP_007313441.1| - 0.0076 15.3 0.3 0.021 13.9 0.2 1.6 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG PRAI PF00697.17 gi|435851855|ref|YP_007313441.1| - 0.069 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase UDPG_MGDP_dh_C PF03720.10 gi|435851855|ref|YP_007313441.1| - 0.084 13.0 0.0 0.25 11.4 0.0 1.8 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACT PF01842.20 gi|435851855|ref|YP_007313441.1| - 0.1 12.1 0.1 0.64 9.5 0.0 2.4 3 0 0 3 3 3 0 ACT domain DUF556 PF04476.8 gi|435851856|ref|YP_007313442.1| - 5.3e-96 320.3 0.3 5.8e-96 320.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) Epimerase PF01370.16 gi|435851857|ref|YP_007313443.1| - 2.4e-47 161.3 0.0 2.9e-47 161.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|435851857|ref|YP_007313443.1| - 1.4e-22 79.7 0.0 1.7e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|435851857|ref|YP_007313443.1| - 2.4e-16 59.5 0.0 3.4e-15 55.7 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|435851857|ref|YP_007313443.1| - 2.4e-16 59.4 0.0 2.9e-16 59.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|435851857|ref|YP_007313443.1| - 2.6e-15 56.0 0.0 8.4e-14 51.0 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|435851857|ref|YP_007313443.1| - 1.9e-14 54.0 0.0 3.3e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|435851857|ref|YP_007313443.1| - 2.4e-09 37.3 0.2 8.7e-09 35.5 0.0 2.0 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|435851857|ref|YP_007313443.1| - 4e-07 29.5 0.1 7.8e-07 28.5 0.0 1.5 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|435851857|ref|YP_007313443.1| - 0.00039 20.1 0.0 0.00083 19.0 0.0 1.5 1 1 0 1 1 1 1 KR domain Saccharop_dh PF03435.13 gi|435851857|ref|YP_007313443.1| - 0.00083 18.4 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|435851857|ref|YP_007313443.1| - 0.016 15.2 0.0 0.055 13.4 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_2 PF03446.10 gi|435851857|ref|YP_007313443.1| - 0.037 13.8 0.0 0.075 12.8 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase PhoH PF02562.11 gi|435851857|ref|YP_007313443.1| - 0.077 12.2 0.1 1.4 8.0 0.0 2.3 2 1 0 2 2 2 0 PhoH-like protein DUF1945 PF09178.5 gi|435851857|ref|YP_007313443.1| - 0.11 12.4 0.3 0.31 10.9 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1945) Antitoxin-MazE PF04014.13 gi|435851858|ref|YP_007313444.1| - 0.0077 15.9 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE HTH_38 PF13936.1 gi|435851859|ref|YP_007313445.1| - 1.2e-05 24.7 0.7 2.6e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|435851859|ref|YP_007313445.1| - 6.3e-05 22.7 0.2 0.00011 21.9 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|435851859|ref|YP_007313445.1| - 0.0025 17.3 0.0 0.0047 16.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|435851859|ref|YP_007313445.1| - 0.006 16.0 0.0 0.012 15.0 0.0 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|435851859|ref|YP_007313445.1| - 0.0082 15.9 0.3 0.017 14.9 0.1 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_1 PF00126.22 gi|435851859|ref|YP_007313445.1| - 0.035 13.8 0.2 0.058 13.1 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_31 PF13560.1 gi|435851859|ref|YP_007313445.1| - 0.049 13.8 0.0 0.067 13.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|435851859|ref|YP_007313445.1| - 0.076 13.0 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Cdd1 PF11731.3 gi|435851859|ref|YP_007313445.1| - 0.091 12.6 0.0 0.73 9.8 0.0 1.9 1 1 1 2 2 2 0 Pathogenicity locus DUF4473 PF14747.1 gi|435851859|ref|YP_007313445.1| - 0.14 12.3 0.1 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4473) Glycos_transf_2 PF00535.21 gi|435851860|ref|YP_007313446.1| - 8.5e-44 149.2 0.1 8.5e-26 90.6 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|435851860|ref|YP_007313446.1| - 2.3e-13 50.5 0.0 4.9e-08 33.0 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|435851860|ref|YP_007313446.1| - 1.4e-08 34.9 0.0 0.0055 16.9 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferase family 2 DAGK_cat PF00781.19 gi|435851860|ref|YP_007313446.1| - 0.064 12.6 0.1 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Polysacc_deac_1 PF01522.16 gi|435851861|ref|YP_007313447.1| - 6.9e-25 87.0 0.0 7.2e-21 74.0 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide deacetylase DUF3473 PF11959.3 gi|435851861|ref|YP_007313447.1| - 2.4e-20 72.3 0.0 9.4e-20 70.4 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3473) Glyco_hydro_57 PF03065.10 gi|435851861|ref|YP_007313447.1| - 0.0024 16.8 0.0 0.0053 15.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 UBA PF00627.26 gi|435851861|ref|YP_007313447.1| - 0.0041 16.9 0.3 2 8.3 0.0 4.0 4 1 0 4 4 4 1 UBA/TS-N domain Methyltransf_18 PF12847.2 gi|435851863|ref|YP_007313449.1| - 9.2e-18 64.8 0.0 1.3e-17 64.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435851863|ref|YP_007313449.1| - 1.1e-16 60.7 0.0 1.5e-16 60.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435851863|ref|YP_007313449.1| - 7e-10 38.5 0.0 1.6e-09 37.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|435851863|ref|YP_007313449.1| - 1.1e-09 38.6 0.0 1.9e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|435851863|ref|YP_007313449.1| - 5.7e-09 35.8 0.0 1.1e-08 34.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|435851863|ref|YP_007313449.1| - 8.7e-09 35.7 0.0 1.4e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|435851863|ref|YP_007313449.1| - 9.9e-09 35.0 0.0 1.4e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|435851863|ref|YP_007313449.1| - 1e-08 35.1 0.0 2.4e-08 34.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435851863|ref|YP_007313449.1| - 4.5e-08 33.3 0.0 8.1e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|435851863|ref|YP_007313449.1| - 1.4e-07 30.8 0.0 2.3e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.8 gi|435851863|ref|YP_007313449.1| - 1.3e-06 27.7 0.0 1.6e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|435851863|ref|YP_007313449.1| - 3e-06 26.4 0.0 3.8e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|435851863|ref|YP_007313449.1| - 1.8e-05 23.9 0.1 2.3e-05 23.6 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|435851863|ref|YP_007313449.1| - 0.00017 21.0 0.0 0.00024 20.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_15 PF09445.5 gi|435851863|ref|YP_007313449.1| - 0.00029 20.4 0.0 0.00072 19.1 0.0 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase CheR PF01739.13 gi|435851863|ref|YP_007313449.1| - 0.00057 19.2 0.1 0.21 10.8 0.0 2.7 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain Methyltransf_32 PF13679.1 gi|435851863|ref|YP_007313449.1| - 0.0014 18.3 0.0 0.0036 16.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|435851863|ref|YP_007313449.1| - 0.0037 16.7 0.0 0.0059 16.0 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_5 PF01795.14 gi|435851863|ref|YP_007313449.1| - 0.0085 15.4 0.0 0.014 14.7 0.0 1.3 1 1 0 1 1 1 1 MraW methylase family DUF4284 PF14112.1 gi|435851863|ref|YP_007313449.1| - 0.018 15.5 1.8 0.74 10.2 0.7 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4284) CMAS PF02353.15 gi|435851863|ref|YP_007313449.1| - 0.034 13.2 0.0 0.044 12.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF938 PF06080.7 gi|435851863|ref|YP_007313449.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF938) DUF354 PF04007.7 gi|435851864|ref|YP_007313450.1| - 9e-22 77.3 0.0 9.5e-22 77.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.14 gi|435851864|ref|YP_007313450.1| - 0.1 11.3 0.0 0.23 10.1 0.0 1.5 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Epimerase_2 PF02350.14 gi|435851865|ref|YP_007313451.1| - 1.7e-113 378.9 0.0 2e-113 378.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|435851865|ref|YP_007313451.1| - 1.1e-05 24.5 0.3 4.8e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF354) Glyco_trans_1_4 PF13692.1 gi|435851865|ref|YP_007313451.1| - 0.034 14.3 0.0 1.1 9.4 0.0 2.5 2 1 0 2 2 2 0 Glycosyl transferases group 1 MGDG_synth PF06925.6 gi|435851865|ref|YP_007313451.1| - 0.04 13.8 0.0 3.1 7.6 0.0 2.6 3 0 0 3 3 3 0 Monogalactosyldiacylglycerol (MGDG) synthase Polysacc_deac_1 PF01522.16 gi|435851866|ref|YP_007313452.1| - 0.0053 16.3 0.0 0.012 15.1 0.0 1.6 1 1 0 1 1 1 1 Polysaccharide deacetylase Glycos_transf_1 PF00534.15 gi|435851867|ref|YP_007313453.1| - 7.4e-36 123.1 0.1 5.8e-35 120.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|435851867|ref|YP_007313453.1| - 2.3e-18 66.6 0.0 1.6e-17 63.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|435851867|ref|YP_007313453.1| - 5.6e-10 39.1 0.8 1e-09 38.3 0.2 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|435851867|ref|YP_007313453.1| - 6.3e-10 39.4 0.0 9.4e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|435851867|ref|YP_007313453.1| - 4.4e-09 36.3 0.0 1e-08 35.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|435851867|ref|YP_007313453.1| - 1.7e-07 31.3 0.0 8.6e-06 25.9 0.0 2.8 3 0 0 3 3 3 1 Glycosyl transferases group 1 DUF3492 PF11997.3 gi|435851867|ref|YP_007313453.1| - 0.011 15.2 0.0 0.041 13.4 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3492) Haemolytic PF01809.13 gi|435851867|ref|YP_007313453.1| - 0.073 12.7 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 Haemolytic domain Hexapep PF00132.19 gi|435851868|ref|YP_007313454.1| - 4.3e-08 32.3 10.3 7e-07 28.4 1.9 2.3 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|435851868|ref|YP_007313454.1| - 5.8e-05 22.5 7.5 0.0017 17.8 1.7 2.4 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.19 gi|435851869|ref|YP_007313455.1| - 3.4e-16 57.9 20.4 1.6e-06 27.3 0.8 4.8 4 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|435851869|ref|YP_007313455.1| - 5.2e-05 22.7 12.8 0.0014 18.1 1.4 3.4 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase DUF188 PF02639.9 gi|435851869|ref|YP_007313455.1| - 0.01 15.2 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 Fucokinase PF07959.7 gi|435851869|ref|YP_007313455.1| - 0.081 11.4 1.3 0.53 8.7 0.2 2.1 1 1 1 2 2 2 0 L-fucokinase TrmB PF01978.14 gi|435851870|ref|YP_007313456.1| - 1e-05 25.1 0.0 1.4e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|435851870|ref|YP_007313456.1| - 1.4e-05 24.8 0.2 5.5e-05 22.9 0.2 1.7 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|435851870|ref|YP_007313456.1| - 4.3e-05 23.2 0.2 5.8e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|435851870|ref|YP_007313456.1| - 9.3e-05 22.0 0.1 0.00024 20.7 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|435851870|ref|YP_007313456.1| - 0.00043 19.5 0.0 0.00076 18.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|435851870|ref|YP_007313456.1| - 0.00046 20.1 0.0 0.00057 19.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|435851870|ref|YP_007313456.1| - 0.00054 19.5 0.0 0.00071 19.2 0.0 1.2 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|435851870|ref|YP_007313456.1| - 0.00086 18.9 0.1 0.0013 18.4 0.1 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_20 PF12840.2 gi|435851870|ref|YP_007313456.1| - 0.0016 18.2 0.0 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|435851870|ref|YP_007313456.1| - 0.0018 17.8 0.1 0.0027 17.2 0.0 1.4 1 1 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_27 PF13463.1 gi|435851870|ref|YP_007313456.1| - 0.0026 18.0 0.0 0.0038 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|435851870|ref|YP_007313456.1| - 0.0046 17.0 0.0 0.0074 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.1 gi|435851870|ref|YP_007313456.1| - 0.0078 15.8 0.0 0.0095 15.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_5 PF01022.15 gi|435851870|ref|YP_007313456.1| - 0.0096 15.5 0.1 0.014 15.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HxlR PF01638.12 gi|435851870|ref|YP_007313456.1| - 0.0099 15.4 0.0 0.014 15.0 0.0 1.4 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_Crp_2 PF13545.1 gi|435851870|ref|YP_007313456.1| - 0.017 14.8 0.1 0.02 14.6 0.0 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Replic_Relax PF13814.1 gi|435851870|ref|YP_007313456.1| - 0.021 14.6 0.0 0.026 14.3 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF3116 PF11313.3 gi|435851870|ref|YP_007313456.1| - 0.029 13.9 0.1 0.036 13.6 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) Ribosomal_S19e PF01090.14 gi|435851870|ref|YP_007313456.1| - 0.047 13.1 0.0 0.055 12.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein S19e PadR PF03551.9 gi|435851870|ref|YP_007313456.1| - 0.05 13.3 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family B-block_TFIIIC PF04182.7 gi|435851870|ref|YP_007313456.1| - 0.063 13.1 0.0 0.095 12.5 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Glyco_tranf_2_4 PF13704.1 gi|435851870|ref|YP_007313456.1| - 0.082 13.2 0.1 0.11 12.7 0.0 1.3 1 1 0 1 1 1 0 Glycosyl transferase family 2 DUF4393 PF14337.1 gi|435851870|ref|YP_007313456.1| - 0.093 12.1 0.0 0.097 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) LOH1CR12 PF10158.4 gi|435851870|ref|YP_007313456.1| - 0.099 12.4 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Tumour suppressor protein TIP39 PF14980.1 gi|435851870|ref|YP_007313456.1| - 0.12 12.0 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 TIP39 peptide OrfB_IS605 PF01385.14 gi|435851871|ref|YP_007313457.1| - 4.8e-46 156.9 2.2 4.8e-46 156.9 1.5 1.8 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|435851871|ref|YP_007313457.1| - 1.2e-24 85.7 1.0 2.3e-24 84.8 0.1 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|435851871|ref|YP_007313457.1| - 2.9e-17 61.6 2.4 7e-17 60.4 1.7 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain CEP19 PF14933.1 gi|435851871|ref|YP_007313457.1| - 0.025 14.8 0.9 0.077 13.2 0.0 2.2 3 0 0 3 3 3 0 CEP19-like protein TF_Zn_Ribbon PF08271.7 gi|435851871|ref|YP_007313457.1| - 0.13 11.5 0.2 0.33 10.2 0.0 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding Catalase PF00199.14 gi|435851872|ref|YP_007313458.1| - 1e-181 603.8 0.2 1.2e-181 603.5 0.1 1.0 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.7 gi|435851872|ref|YP_007313458.1| - 3e-21 75.0 0.0 5.7e-21 74.1 0.0 1.5 1 0 0 1 1 1 1 Catalase-related immune-responsive AhpC-TSA PF00578.16 gi|435851873|ref|YP_007313459.1| - 4.3e-35 120.1 0.1 5.6e-35 119.7 0.1 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|435851873|ref|YP_007313459.1| - 8.1e-15 54.6 0.0 1e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|435851873|ref|YP_007313459.1| - 8.1e-15 54.1 0.6 3.1e-14 52.3 0.4 2.0 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin DUF4511 PF14974.1 gi|435851873|ref|YP_007313459.1| - 0.0041 16.8 0.1 0.0079 15.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4511) FUR PF01475.14 gi|435851874|ref|YP_007313460.1| - 4.1e-31 107.3 0.1 4.8e-31 107.1 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.9 gi|435851874|ref|YP_007313460.1| - 0.0052 16.5 0.0 0.0078 15.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4182 PF13790.1 gi|435851874|ref|YP_007313460.1| - 0.006 16.3 3.5 0.64 9.8 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4182) Penicillinase_R PF03965.11 gi|435851874|ref|YP_007313460.1| - 0.0091 16.0 0.0 0.012 15.7 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.2 gi|435851874|ref|YP_007313460.1| - 0.014 15.1 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|435851874|ref|YP_007313460.1| - 0.021 14.7 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) zf-trcl PF13451.1 gi|435851874|ref|YP_007313460.1| - 0.028 14.0 0.8 0.63 9.7 0.1 2.2 2 0 0 2 2 2 0 Probable zinc-binding domain TrmB PF01978.14 gi|435851874|ref|YP_007313460.1| - 0.03 14.0 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|435851874|ref|YP_007313460.1| - 0.054 13.1 0.0 0.63 9.7 0.0 2.1 2 0 0 2 2 2 0 HTH domain HTH_5 PF01022.15 gi|435851874|ref|YP_007313460.1| - 0.082 12.5 0.0 0.43 10.2 0.0 2.0 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Exo_endo_phos PF03372.18 gi|435851875|ref|YP_007313461.1| - 9.6e-28 97.7 0.0 1.1e-27 97.5 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|435851875|ref|YP_007313461.1| - 1.7e-14 53.4 0.0 2.4e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase Lysine_decarbox PF03641.9 gi|435851876|ref|YP_007313462.1| - 4.7e-09 36.1 0.2 7.1e-09 35.5 0.1 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|435851876|ref|YP_007313462.1| - 8.9e-09 34.5 3.8 7.5e-06 24.9 0.4 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|435851876|ref|YP_007313462.1| - 0.14 12.0 0.1 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase DUF367 PF04034.8 gi|435851877|ref|YP_007313463.1| - 5.8e-45 152.0 0.0 7.1e-45 151.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|435851877|ref|YP_007313463.1| - 8.1e-14 50.9 0.5 1.2e-13 50.3 0.4 1.2 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI CbiA PF01656.18 gi|435851878|ref|YP_007313464.1| - 4.8e-26 91.3 0.4 6.3e-26 90.9 0.3 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|435851878|ref|YP_007313464.1| - 1.3e-18 67.4 0.0 1.7e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|435851878|ref|YP_007313464.1| - 1.6e-08 34.0 0.2 0.0002 20.6 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|435851878|ref|YP_007313464.1| - 1.5e-06 27.7 0.0 3.3e-06 26.6 0.0 1.7 1 1 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|435851878|ref|YP_007313464.1| - 9.8e-06 24.8 0.1 2.4e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|435851878|ref|YP_007313464.1| - 6e-05 22.5 0.0 8.3e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|435851878|ref|YP_007313464.1| - 0.00015 20.9 0.4 0.0025 16.9 0.1 2.4 2 1 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.4 gi|435851878|ref|YP_007313464.1| - 0.0017 18.2 0.1 0.0031 17.3 0.1 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like T2SE PF00437.15 gi|435851879|ref|YP_007313465.1| - 2.6e-51 174.1 0.1 6.4e-51 172.8 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF2145 PF09916.4 gi|435851879|ref|YP_007313465.1| - 0.0056 16.2 0.2 0.016 14.6 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2145) AAA_29 PF13555.1 gi|435851879|ref|YP_007313465.1| - 0.0067 15.9 0.1 0.016 14.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2294 PF10057.4 gi|435851879|ref|YP_007313465.1| - 0.023 14.3 0.8 0.06 12.9 0.5 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) ABC_tran PF00005.22 gi|435851879|ref|YP_007313465.1| - 0.046 14.0 0.3 0.25 11.6 0.0 2.4 3 0 0 3 3 3 0 ABC transporter AAA_17 PF13207.1 gi|435851879|ref|YP_007313465.1| - 0.068 13.9 2.0 0.58 10.9 0.0 3.2 4 1 0 4 4 4 0 AAA domain AAA_21 PF13304.1 gi|435851879|ref|YP_007313465.1| - 0.14 12.0 0.0 0.14 12.0 0.0 3.0 3 1 0 4 4 4 0 AAA domain AAA_23 PF13476.1 gi|435851879|ref|YP_007313465.1| - 1.7 8.9 0.0 1.7 8.9 0.0 3.1 3 1 0 3 3 3 0 AAA domain T2SF PF00482.18 gi|435851880|ref|YP_007313466.1| - 1.3e-10 41.2 3.9 2.2e-10 40.5 0.1 2.7 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F DUF3112 PF11309.3 gi|435851880|ref|YP_007313466.1| - 4.5 7.0 11.3 0.036 13.8 0.6 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3112) T2SF PF00482.18 gi|435851881|ref|YP_007313467.1| - 3.5e-22 78.5 3.6 7e-22 77.6 2.5 1.5 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F DUF3278 PF11683.3 gi|435851881|ref|YP_007313467.1| - 0.3 11.1 8.4 0.75 9.7 0.2 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF3278) DUF1129 PF06570.6 gi|435851881|ref|YP_007313467.1| - 0.78 9.0 5.2 0.54 9.5 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Fumerase_C PF05683.7 gi|435851882|ref|YP_007313468.1| - 4e-50 169.8 0.1 4.5e-50 169.6 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.9 gi|435851883|ref|YP_007313469.1| - 4e-96 321.2 0.0 4.5e-96 321.0 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) DBI_PRT PF02277.12 gi|435851883|ref|YP_007313469.1| - 0.07 12.2 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyltransferase Peptidase_M50 PF02163.17 gi|435851884|ref|YP_007313470.1| - 1.8e-27 95.5 0.0 5.6e-27 93.9 0.0 1.8 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|435851884|ref|YP_007313470.1| - 9.6e-13 47.8 0.0 3.6e-06 26.7 0.0 2.5 1 1 1 2 2 2 2 PDZ domain PDZ PF00595.19 gi|435851884|ref|YP_007313470.1| - 9.2e-07 28.9 0.1 1.9e-05 24.7 0.0 2.3 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) PDZ_1 PF12812.2 gi|435851884|ref|YP_007313470.1| - 0.025 14.4 0.0 0.24 11.2 0.0 2.2 2 0 0 2 2 2 0 PDZ-like domain TauE PF01925.14 gi|435851885|ref|YP_007313471.1| - 3.8e-42 144.4 38.4 4.6e-42 144.1 26.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1049 PF06305.6 gi|435851885|ref|YP_007313471.1| - 1 8.8 0.0 1 8.8 0.0 3.9 3 1 1 5 5 5 0 Protein of unknown function (DUF1049) SfsA PF03749.8 gi|435851886|ref|YP_007313472.1| - 2.8e-58 196.9 0.0 3.6e-58 196.5 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein TPP_enzyme_C PF02775.16 gi|435851887|ref|YP_007313473.1| - 4.3e-19 68.5 0.0 6.9e-19 67.9 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|435851888|ref|YP_007313474.1| - 3.5e-12 46.1 0.1 4e-12 45.9 0.0 1.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.14 gi|435851888|ref|YP_007313474.1| - 0.0038 16.7 1.0 0.0065 16.0 0.7 1.4 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FeS PF04060.8 gi|435851889|ref|YP_007313475.1| - 8.1e-11 41.3 1.2 1.6e-10 40.3 0.9 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.14 gi|435851890|ref|YP_007313476.1| - 4.1e-14 52.4 0.0 5.7e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|435851890|ref|YP_007313476.1| - 1.4e-05 24.7 0.0 2.6e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|435851890|ref|YP_007313476.1| - 0.0025 16.9 0.0 0.0031 16.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|435851890|ref|YP_007313476.1| - 0.012 15.0 0.2 0.019 14.4 0.1 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF2075 PF09848.4 gi|435851890|ref|YP_007313476.1| - 0.014 14.4 0.0 0.018 14.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|435851890|ref|YP_007313476.1| - 0.018 14.4 0.0 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|435851890|ref|YP_007313476.1| - 0.019 14.2 0.0 0.026 13.7 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ArgK PF03308.11 gi|435851890|ref|YP_007313476.1| - 0.02 13.6 0.1 2.3 6.9 0.0 2.2 2 0 0 2 2 2 0 ArgK protein AAA_18 PF13238.1 gi|435851890|ref|YP_007313476.1| - 0.024 14.9 0.0 0.045 14.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain Viral_helicase1 PF01443.13 gi|435851890|ref|YP_007313476.1| - 0.025 14.0 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MobB PF03205.9 gi|435851890|ref|YP_007313476.1| - 0.03 14.0 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|435851890|ref|YP_007313476.1| - 0.07 13.1 0.0 0.096 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_11 PF13086.1 gi|435851890|ref|YP_007313476.1| - 0.12 11.9 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|435851890|ref|YP_007313476.1| - 0.14 11.7 0.2 0.26 10.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|435851890|ref|YP_007313476.1| - 0.15 10.9 0.1 0.22 10.3 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_17 PF13207.1 gi|435851890|ref|YP_007313476.1| - 0.2 12.5 0.6 0.37 11.6 0.4 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|435851890|ref|YP_007313476.1| - 0.2 11.4 0.4 0.35 10.7 0.3 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|435851891|ref|YP_007313477.1| - 5.5e-13 49.3 0.0 8.2e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435851891|ref|YP_007313477.1| - 4.4e-08 33.4 0.3 0.00047 20.2 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|435851891|ref|YP_007313477.1| - 1.2e-05 24.7 0.1 2.8e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|435851891|ref|YP_007313477.1| - 6e-05 23.1 0.1 0.00012 22.1 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|435851891|ref|YP_007313477.1| - 0.0001 22.7 0.0 0.00014 22.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|435851891|ref|YP_007313477.1| - 0.00027 21.0 0.4 0.0025 17.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|435851891|ref|YP_007313477.1| - 0.00078 18.7 0.2 0.034 13.3 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|435851891|ref|YP_007313477.1| - 0.0015 17.9 0.0 0.0028 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|435851891|ref|YP_007313477.1| - 0.0018 19.0 0.0 0.0042 17.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|435851891|ref|YP_007313477.1| - 0.0025 17.5 0.0 0.0063 16.2 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|435851891|ref|YP_007313477.1| - 0.0031 17.2 0.5 1 9.0 0.0 2.3 2 0 0 2 2 2 1 NTPase AAA_14 PF13173.1 gi|435851891|ref|YP_007313477.1| - 0.0037 17.1 0.1 0.13 12.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|435851891|ref|YP_007313477.1| - 0.0071 16.6 0.0 0.017 15.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|435851891|ref|YP_007313477.1| - 0.0072 15.1 0.0 0.013 14.2 0.0 1.6 1 0 0 1 1 1 1 ArgK protein Arch_ATPase PF01637.13 gi|435851891|ref|YP_007313477.1| - 0.0087 15.7 0.3 0.065 12.9 0.2 2.0 1 1 0 1 1 1 1 Archaeal ATPase DUF258 PF03193.11 gi|435851891|ref|YP_007313477.1| - 0.01 15.0 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|435851891|ref|YP_007313477.1| - 0.012 15.1 0.0 0.068 12.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|435851891|ref|YP_007313477.1| - 0.026 14.3 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit MMR_HSR1 PF01926.18 gi|435851891|ref|YP_007313477.1| - 0.028 14.3 0.0 0.075 12.9 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.14 gi|435851891|ref|YP_007313477.1| - 0.033 13.6 0.0 0.075 12.4 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|435851891|ref|YP_007313477.1| - 0.037 13.9 0.0 0.051 13.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|435851891|ref|YP_007313477.1| - 0.04 12.8 0.5 0.085 11.7 0.3 1.6 1 1 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.17 gi|435851891|ref|YP_007313477.1| - 0.044 12.6 0.0 0.077 11.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain KAP_NTPase PF07693.9 gi|435851891|ref|YP_007313477.1| - 0.077 11.9 0.0 0.11 11.4 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain AAA_5 PF07728.9 gi|435851891|ref|YP_007313477.1| - 0.11 12.1 0.0 1.9 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|435851891|ref|YP_007313477.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Peptidase_M23 PF01551.17 gi|435851891|ref|YP_007313477.1| - 0.12 12.4 0.2 6.6 6.8 0.0 2.3 2 0 0 2 2 2 0 Peptidase family M23 Adeno_IVa2 PF02456.10 gi|435851891|ref|YP_007313477.1| - 0.14 10.7 0.0 0.22 10.1 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein Zeta_toxin PF06414.7 gi|435851891|ref|YP_007313477.1| - 0.14 11.2 0.0 0.26 10.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin PALP PF00291.20 gi|435851892|ref|YP_007313478.1| - 1.6e-20 73.5 0.1 2.3e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.11 gi|435851892|ref|YP_007313478.1| - 0.058 12.9 0.3 1.1 8.8 0.0 2.2 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain DASH_Dam1 PF08653.5 gi|435851893|ref|YP_007313479.1| - 0.0059 16.3 2.7 0.014 15.1 1.9 1.6 1 0 0 1 1 1 1 DASH complex subunit Dam1 TPR_16 PF13432.1 gi|435851894|ref|YP_007313480.1| - 1.7e-10 41.3 4.1 3.6e-07 30.6 0.6 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435851894|ref|YP_007313480.1| - 4.8e-09 36.0 1.7 0.00062 20.1 0.1 3.9 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435851894|ref|YP_007313480.1| - 9.7e-09 35.4 13.3 6.2e-05 23.2 1.3 2.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|435851894|ref|YP_007313480.1| - 1.2e-08 34.2 0.2 0.00054 19.6 0.0 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|435851894|ref|YP_007313480.1| - 5.9e-06 25.8 1.1 0.00052 19.6 0.1 2.3 1 1 1 2 2 2 2 TPR repeat TPR_1 PF00515.23 gi|435851894|ref|YP_007313480.1| - 1.3e-05 24.6 0.2 0.0033 16.9 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|435851894|ref|YP_007313480.1| - 3e-05 23.8 1.5 0.069 13.0 0.0 2.9 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435851894|ref|YP_007313480.1| - 3.3e-05 23.3 1.0 0.0018 17.8 0.0 2.8 2 1 1 3 3 2 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|435851894|ref|YP_007313480.1| - 3.9e-05 23.8 0.3 0.026 14.9 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|435851894|ref|YP_007313480.1| - 0.00018 21.2 0.1 0.0011 18.8 0.1 2.1 2 0 0 2 2 2 1 Fis1 C-terminal tetratricopeptide repeat TPR_9 PF13371.1 gi|435851894|ref|YP_007313480.1| - 0.0013 18.5 0.1 0.014 15.2 0.0 2.3 2 1 0 2 2 2 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|435851894|ref|YP_007313480.1| - 0.002 16.9 0.0 0.0028 16.4 0.0 1.1 1 0 0 1 1 1 1 NMDA receptor-regulated protein 1 Apc3 PF12895.2 gi|435851894|ref|YP_007313480.1| - 0.0023 18.0 0.3 0.0043 17.1 0.2 1.4 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 CPSase_L_D3 PF02787.14 gi|435851894|ref|YP_007313480.1| - 0.023 14.4 0.1 0.79 9.4 0.0 2.2 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TPR_10 PF13374.1 gi|435851894|ref|YP_007313480.1| - 0.05 13.5 0.1 12 5.9 0.0 3.5 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435851894|ref|YP_007313480.1| - 0.063 13.4 1.1 0.86 9.9 0.1 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat UPF0223 PF05256.7 gi|435851894|ref|YP_007313480.1| - 0.064 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0223) BTAD PF03704.12 gi|435851894|ref|YP_007313480.1| - 0.16 12.2 0.4 2.4 8.4 0.1 2.1 1 1 1 2 2 2 0 Bacterial transcriptional activator domain MIT PF04212.13 gi|435851894|ref|YP_007313480.1| - 0.19 11.6 1.0 4.3 7.2 0.1 2.8 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain HAD_2 PF13419.1 gi|435851895|ref|YP_007313481.1| - 2.5e-25 89.7 0.0 3.1e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|435851895|ref|YP_007313481.1| - 4.9e-12 46.7 0.0 1.2e-11 45.4 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|435851895|ref|YP_007313481.1| - 2.2e-06 27.3 0.0 4.2e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.13 gi|435851895|ref|YP_007313481.1| - 4e-05 23.3 0.0 0.00039 20.1 0.0 2.0 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase HAD PF12710.2 gi|435851895|ref|YP_007313481.1| - 0.0067 16.6 0.0 0.0089 16.2 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CbbQ_C PF08406.5 gi|435851896|ref|YP_007313482.1| - 3.8e-34 116.5 0.1 3.4e-33 113.4 0.0 2.2 2 0 0 2 2 2 1 CbbQ/NirQ/NorQ C-terminal AAA_5 PF07728.9 gi|435851896|ref|YP_007313482.1| - 7.6e-30 103.4 0.0 1e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|435851896|ref|YP_007313482.1| - 0.0037 17.3 0.0 0.0063 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|435851896|ref|YP_007313482.1| - 0.012 14.8 0.0 0.2 10.8 0.0 2.1 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|435851896|ref|YP_007313482.1| - 0.039 13.5 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|435851896|ref|YP_007313482.1| - 0.048 13.8 0.0 0.077 13.2 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|435851896|ref|YP_007313482.1| - 0.048 13.1 0.0 0.12 11.8 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_33 PF13671.1 gi|435851896|ref|YP_007313482.1| - 0.049 13.4 0.0 0.078 12.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|435851896|ref|YP_007313482.1| - 0.057 13.2 0.0 0.094 12.5 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_14 PF13173.1 gi|435851896|ref|YP_007313482.1| - 0.079 12.8 0.0 0.16 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain VWA_2 PF13519.1 gi|435851897|ref|YP_007313483.1| - 6.1e-10 39.4 0.0 1.2e-09 38.5 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|435851897|ref|YP_007313483.1| - 4.7e-05 23.1 0.1 0.00011 21.9 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain Glyoxalase PF00903.20 gi|435851897|ref|YP_007313483.1| - 0.025 14.5 0.0 0.056 13.4 0.0 1.6 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MtN3_slv PF03083.11 gi|435851899|ref|YP_007313485.1| - 5.4e-10 39.0 1.4 6.7e-10 38.7 1.0 1.2 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PQ-loop PF04193.9 gi|435851899|ref|YP_007313485.1| - 1.9e-09 36.8 0.3 1.9e-09 36.8 0.2 1.5 2 0 0 2 2 2 1 PQ loop repeat LAB_N PF07578.6 gi|435851899|ref|YP_007313485.1| - 0.0014 18.4 0.1 0.0018 18.1 0.1 1.2 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain zinc_ribbon_6 PF14599.1 gi|435851900|ref|YP_007313486.1| - 0.02 14.7 0.3 0.037 13.8 0.2 1.5 1 1 0 1 1 1 0 Zinc-ribbon DZR PF12773.2 gi|435851900|ref|YP_007313486.1| - 0.035 13.9 1.0 0.046 13.5 0.7 1.2 1 0 0 1 1 1 0 Double zinc ribbon LIM PF00412.17 gi|435851900|ref|YP_007313486.1| - 0.063 13.3 0.9 0.083 12.9 0.6 1.1 1 0 0 1 1 1 0 LIM domain DNA_RNApol_7kD PF03604.8 gi|435851900|ref|YP_007313486.1| - 0.1 12.1 2.2 0.33 10.4 1.5 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|435851900|ref|YP_007313486.1| - 0.17 11.8 2.0 0.25 11.3 1.4 1.2 1 0 0 1 1 1 0 Zinc ribbon domain zf-dskA_traR PF01258.12 gi|435851900|ref|YP_007313486.1| - 0.28 10.9 3.7 7.2 6.4 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Prok-JAB PF14464.1 gi|435851901|ref|YP_007313487.1| - 5.5e-11 41.9 0.0 7.3e-11 41.5 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.10 gi|435851901|ref|YP_007313487.1| - 0.012 15.2 0.1 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 RadC-like JAB domain JAB PF01398.16 gi|435851901|ref|YP_007313487.1| - 0.042 13.5 0.0 0.059 13.1 0.0 1.5 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF997 PF06196.7 gi|435851902|ref|YP_007313488.1| - 7.9 6.0 6.5 1.9 8.0 1.8 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF997) 4HBT PF03061.17 gi|435851903|ref|YP_007313489.1| - 4.6e-16 58.7 0.5 6.5e-16 58.2 0.4 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|435851903|ref|YP_007313489.1| - 1.4e-08 34.7 0.1 1.9e-08 34.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|435851903|ref|YP_007313489.1| - 0.0097 15.6 0.0 0.011 15.5 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF2099 PF09872.4 gi|435851904|ref|YP_007313490.1| - 4.3e-115 383.1 1.2 4.9e-115 382.9 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) AMP-binding_C_2 PF14535.1 gi|435851905|ref|YP_007313491.1| - 6e-30 103.1 1.8 1.4e-29 101.9 1.3 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|435851905|ref|YP_007313491.1| - 5.1e-20 71.2 0.1 1.2e-19 70.0 0.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme TrmE_N PF10396.4 gi|435851905|ref|YP_007313491.1| - 0.029 14.3 0.0 0.054 13.4 0.0 1.5 1 0 0 1 1 1 0 GTP-binding protein TrmE N-terminus Peptidase_MA_2 PF13485.1 gi|435851906|ref|YP_007313492.1| - 8.5e-10 38.7 0.2 2.6e-09 37.1 0.1 1.8 1 0 0 1 1 1 1 Peptidase MA superfamily Peptidase_M1 PF01433.15 gi|435851906|ref|YP_007313492.1| - 3.5e-06 26.3 0.5 2.5e-05 23.5 0.3 2.0 1 1 0 1 1 1 1 Peptidase family M1 DUF3160 PF11369.3 gi|435851907|ref|YP_007313493.1| - 0.18 10.0 2.9 0.22 9.7 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3160) DUF432 PF04254.8 gi|435851908|ref|YP_007313494.1| - 1.8e-36 124.7 0.0 2.8e-36 124.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.13 gi|435851909|ref|YP_007313495.1| - 7.3e-53 178.9 4.9 7.3e-53 178.9 3.4 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF3917 PF13055.1 gi|435851909|ref|YP_007313495.1| - 0.044 14.0 3.1 0.044 14.0 2.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3917) PepSY_TM_2 PF13703.1 gi|435851909|ref|YP_007313495.1| - 0.057 13.5 4.5 2.6 8.2 0.7 2.3 1 1 1 2 2 2 0 PepSY-associated TM helix S-layer PF07752.6 gi|435851910|ref|YP_007313496.1| - 1.9e-153 509.0 22.9 2.9e-81 272.4 2.4 2.7 3 0 0 3 3 3 2 S-layer protein CARDB PF07705.6 gi|435851910|ref|YP_007313496.1| - 2.9e-09 36.8 2.0 2.9e-09 36.8 1.4 4.1 5 0 0 5 5 5 1 CARDB tRNA-synt_1c_C PF03950.13 gi|435851910|ref|YP_007313496.1| - 4.2e-05 23.2 0.6 0.15 11.7 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (E and Q), anti-codon binding domain DUF3380 PF11860.3 gi|435851910|ref|YP_007313496.1| - 0.0012 18.9 0.1 0.2 11.6 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3380) DUF4198 PF10670.4 gi|435851910|ref|YP_007313496.1| - 0.026 14.5 6.1 0.24 11.3 0.2 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4198) Cupredoxin_1 PF13473.1 gi|435851910|ref|YP_007313496.1| - 0.036 13.9 3.4 2.1 8.3 0.1 4.7 4 1 0 4 4 4 0 Cupredoxin-like domain Fn3-like PF14310.1 gi|435851910|ref|YP_007313496.1| - 0.12 12.2 1.4 0.49 10.3 0.1 2.6 3 0 0 3 3 3 0 Fibronectin type III-like domain Transglut_C PF00927.17 gi|435851910|ref|YP_007313496.1| - 0.38 10.8 2.7 0.39 10.7 0.2 2.3 3 0 0 3 3 3 0 Transglutaminase family, C-terminal ig like domain E1-E2_ATPase PF00122.15 gi|435851911|ref|YP_007313497.1| - 1.4e-66 223.8 1.2 1.4e-66 223.8 0.8 3.4 2 1 1 3 3 3 2 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|435851911|ref|YP_007313497.1| - 2.6e-44 150.9 2.7 2.6e-44 150.9 1.9 2.6 2 1 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|435851911|ref|YP_007313497.1| - 2.9e-36 125.9 0.1 5.1e-36 125.0 0.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|435851911|ref|YP_007313497.1| - 3e-18 65.5 0.0 1.4e-17 63.3 0.0 2.1 2 0 0 2 2 2 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Cation_ATPase_N PF00690.21 gi|435851911|ref|YP_007313497.1| - 1.1e-17 63.2 1.1 1.9e-17 62.4 0.0 2.1 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|435851911|ref|YP_007313497.1| - 3.3e-17 63.2 0.0 6.9e-17 62.2 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|435851911|ref|YP_007313497.1| - 9e-11 41.8 3.4 1.6e-06 27.9 2.4 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Bac_rhamnosid_N PF08531.5 gi|435851911|ref|YP_007313497.1| - 0.052 13.0 0.0 0.086 12.3 0.0 1.2 1 0 0 1 1 1 0 Alpha-L-rhamnosidase N-terminal domain SpoVA PF03862.8 gi|435851911|ref|YP_007313497.1| - 0.25 11.4 5.7 0.91 9.6 0.5 2.7 2 0 0 2 2 2 0 SpoVA protein MarC PF01914.12 gi|435851912|ref|YP_007313498.1| - 7.3e-59 198.2 16.4 8.2e-59 198.1 11.4 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF2269 PF10027.4 gi|435851912|ref|YP_007313498.1| - 4.6 6.9 14.8 0.19 11.4 2.5 3.3 1 1 2 3 3 3 0 Predicted integral membrane protein (DUF2269) ThiC PF01964.13 gi|435851913|ref|YP_007313499.1| - 2.1e-183 609.6 0.7 2.4e-183 609.4 0.5 1.0 1 0 0 1 1 1 1 ThiC family Topoisom_bac PF01131.15 gi|435851915|ref|YP_007313501.1| - 3.8e-100 335.5 0.6 4.7e-100 335.2 0.4 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|435851915|ref|YP_007313501.1| - 1e-15 56.9 16.7 9.1e-11 41.0 1.2 3.7 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|435851915|ref|YP_007313501.1| - 5.2e-14 52.0 0.0 2.3e-13 49.9 0.0 2.1 2 0 0 2 2 2 1 Toprim domain Toprim_4 PF13662.1 gi|435851915|ref|YP_007313501.1| - 0.014 15.3 2.1 2.3 8.2 0.1 3.2 2 1 1 3 3 3 0 Toprim domain Nitroreductase PF00881.19 gi|435851916|ref|YP_007313502.1| - 1.3e-31 109.6 0.0 1.7e-31 109.2 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|435851916|ref|YP_007313502.1| - 0.051 12.7 0.1 0.097 11.8 0.0 1.6 1 1 1 2 2 2 0 Putative TM nitroreductase Entericidin PF08085.6 gi|435851916|ref|YP_007313502.1| - 0.14 11.9 0.1 0.24 11.2 0.1 1.4 1 0 0 1 1 1 0 Entericidin EcnA/B family IlvN PF07991.7 gi|435851917|ref|YP_007313503.1| - 1e-76 255.8 0.7 1.4e-76 255.4 0.5 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|435851917|ref|YP_007313503.1| - 1.4e-54 183.9 0.1 2.2e-54 183.3 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|435851917|ref|YP_007313503.1| - 1.9e-07 30.4 0.0 3.3e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|435851917|ref|YP_007313503.1| - 2.8e-07 30.5 0.0 5.2e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|435851917|ref|YP_007313503.1| - 1e-06 29.0 0.0 2.4e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|435851917|ref|YP_007313503.1| - 1.5e-05 24.9 0.0 2.6e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Oxidored_nitro PF00148.14 gi|435851917|ref|YP_007313503.1| - 0.0052 15.4 0.2 0.015 13.9 0.0 1.7 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase ApbA PF02558.11 gi|435851917|ref|YP_007313503.1| - 0.012 15.0 0.1 0.021 14.2 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|435851917|ref|YP_007313503.1| - 0.083 13.4 0.1 0.24 11.8 0.1 1.9 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ALS_ss_C PF10369.4 gi|435851918|ref|YP_007313504.1| - 1.6e-33 114.1 2.0 1.6e-33 114.1 1.4 1.8 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|435851918|ref|YP_007313504.1| - 3.4e-19 68.4 1.5 6.5e-19 67.4 0.2 2.1 2 1 0 2 2 2 1 ACT domain ACT PF01842.20 gi|435851918|ref|YP_007313504.1| - 1.5e-16 59.4 1.4 9.6e-16 56.9 0.1 2.3 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|435851918|ref|YP_007313504.1| - 1.8e-05 25.0 0.6 1.8e-05 25.0 0.4 2.1 2 0 0 2 2 2 1 ACT domain SLS PF14611.1 gi|435851918|ref|YP_007313504.1| - 0.066 12.6 1.5 0.88 8.9 0.2 2.0 1 1 0 2 2 2 0 Mitochondrial inner-membrane-bound regulator DUF2683 PF10884.3 gi|435851918|ref|YP_007313504.1| - 0.08 12.8 1.4 0.16 11.9 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2683) NIL PF09383.5 gi|435851918|ref|YP_007313504.1| - 0.09 12.3 0.1 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 NIL domain KH_1 PF00013.24 gi|435851918|ref|YP_007313504.1| - 0.15 11.7 3.6 0.29 10.8 0.8 2.5 2 1 0 2 2 2 0 KH domain TPP_enzyme_N PF02776.13 gi|435851919|ref|YP_007313505.1| - 2.7e-62 209.2 0.1 9.7e-61 204.2 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|435851919|ref|YP_007313505.1| - 3.7e-56 188.9 0.0 1.9e-55 186.6 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|435851919|ref|YP_007313505.1| - 8.7e-48 161.5 0.1 1.5e-47 160.7 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|435851919|ref|YP_007313505.1| - 0.02 14.3 0.9 0.065 12.7 0.4 1.7 1 1 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HMGL-like PF00682.14 gi|435851920|ref|YP_007313506.1| - 2.7e-70 236.7 0.8 4.9e-70 235.8 0.5 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|435851920|ref|YP_007313506.1| - 3.7e-37 127.0 1.0 7.3e-37 126.1 0.7 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain IMPDH PF00478.20 gi|435851920|ref|YP_007313506.1| - 0.00048 19.1 1.3 0.00074 18.5 0.9 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Peptidase_M42 PF05343.9 gi|435851921|ref|YP_007313507.1| - 4.8e-113 376.7 2.9 5.8e-113 376.4 2.0 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|435851921|ref|YP_007313507.1| - 6.6e-11 42.0 0.1 1e-10 41.4 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|435851921|ref|YP_007313507.1| - 3e-06 27.0 0.0 5.6e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M28 RNA_pol_N PF01194.12 gi|435851922|ref|YP_007313508.1| - 0.19 11.7 1.6 0.2 11.6 1.1 1.2 1 1 0 1 1 1 0 RNA polymerases N / 8 kDa subunit zf-HIT PF04438.11 gi|435851922|ref|YP_007313508.1| - 0.9 9.2 4.5 6.3 6.5 3.1 1.9 1 1 0 1 1 1 0 HIT zinc finger DUF2685 PF10886.3 gi|435851922|ref|YP_007313508.1| - 2.3 8.3 4.6 7 6.7 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2685) Epimerase PF01370.16 gi|435851923|ref|YP_007313509.1| - 2.5e-61 207.1 0.0 2.9e-61 206.9 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|435851923|ref|YP_007313509.1| - 4.5e-22 78.0 0.0 5.7e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|435851923|ref|YP_007313509.1| - 2.2e-21 75.9 0.0 3.1e-21 75.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|435851923|ref|YP_007313509.1| - 4.2e-18 65.1 0.0 6.1e-17 61.3 0.0 2.0 1 1 1 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|435851923|ref|YP_007313509.1| - 1.4e-17 63.5 0.1 2.3e-16 59.5 0.1 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|435851923|ref|YP_007313509.1| - 4.6e-11 43.0 0.0 6.4e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|435851923|ref|YP_007313509.1| - 2.9e-07 30.5 0.3 8e-07 29.1 0.2 1.7 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|435851923|ref|YP_007313509.1| - 4.4e-06 26.5 0.0 1.6e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose 4-epimerase C-term subunit TrkA_N PF02254.13 gi|435851923|ref|YP_007313509.1| - 0.00021 21.2 0.2 0.0012 18.8 0.1 2.1 2 0 0 2 2 2 1 TrkA-N domain KR PF08659.5 gi|435851923|ref|YP_007313509.1| - 0.0013 18.4 0.5 0.084 12.5 0.3 2.2 1 1 0 1 1 1 1 KR domain Methyltransf_17 PF12692.2 gi|435851923|ref|YP_007313509.1| - 0.003 17.2 0.0 0.79 9.3 0.0 2.2 2 0 0 2 2 2 2 S-adenosyl-L-methionine methyltransferase DapB_N PF01113.15 gi|435851923|ref|YP_007313509.1| - 0.0054 16.6 0.1 0.009 15.9 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NmrA PF05368.8 gi|435851923|ref|YP_007313509.1| - 0.0058 15.9 0.0 2.1 7.5 0.0 2.2 2 0 0 2 2 2 2 NmrA-like family Semialdhyde_dh PF01118.19 gi|435851923|ref|YP_007313509.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|435851924|ref|YP_007313510.1| - 1.3e-34 119.2 0.0 2.1e-34 118.5 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|435851924|ref|YP_007313510.1| - 6.2e-20 71.3 0.0 1.7e-19 69.8 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|435851924|ref|YP_007313510.1| - 5e-19 68.3 0.0 1.4e-18 66.9 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.10 gi|435851924|ref|YP_007313510.1| - 0.0016 18.3 0.1 9.4 6.0 0.0 3.4 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|435851924|ref|YP_007313510.1| - 0.004 17.4 0.1 1 9.6 0.0 2.7 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|435851924|ref|YP_007313510.1| - 0.081 12.6 0.1 8.5 6.0 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.17 gi|435851925|ref|YP_007313511.1| - 7.5e-30 103.9 0.2 1.4e-29 103.0 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|435851925|ref|YP_007313511.1| - 1.5e-05 24.7 0.0 3.5e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.14 gi|435851925|ref|YP_007313511.1| - 5.1e-05 23.7 0.5 0.0001 22.7 0.3 1.5 1 0 0 1 1 1 1 CoA binding domain NAD_binding_2 PF03446.10 gi|435851925|ref|YP_007313511.1| - 0.00015 21.6 0.5 0.00029 20.7 0.3 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.19 gi|435851925|ref|YP_007313511.1| - 0.00066 19.6 0.1 0.0013 18.6 0.1 1.6 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|435851925|ref|YP_007313511.1| - 0.00093 19.1 1.6 0.0075 16.1 1.1 2.3 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|435851925|ref|YP_007313511.1| - 0.0094 15.1 0.1 0.022 13.9 0.1 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|435851925|ref|YP_007313511.1| - 0.014 15.8 0.1 0.027 14.9 0.1 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.10 gi|435851925|ref|YP_007313511.1| - 0.027 13.2 0.1 0.039 12.7 0.1 1.5 1 1 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Semialdhyde_dh PF01118.19 gi|435851925|ref|YP_007313511.1| - 0.034 14.4 0.2 0.074 13.3 0.1 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DegT_DnrJ_EryC1 PF01041.12 gi|435851926|ref|YP_007313512.1| - 3.7e-135 450.6 0.7 4.1e-135 450.4 0.5 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|435851926|ref|YP_007313512.1| - 4.1e-10 39.2 1.0 1.2e-09 37.7 0.7 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|435851926|ref|YP_007313512.1| - 1.9e-07 29.7 0.2 3.1e-07 29.0 0.2 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|435851926|ref|YP_007313512.1| - 8.7e-07 28.2 0.1 1.5e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|435851926|ref|YP_007313512.1| - 8.8e-06 24.6 0.7 0.00012 20.9 0.3 2.0 2 0 0 2 2 2 1 Aminotransferase class-V SelA PF03841.8 gi|435851926|ref|YP_007313512.1| - 0.023 13.4 0.2 0.13 10.9 0.1 2.0 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase OKR_DC_1 PF01276.15 gi|435851926|ref|YP_007313512.1| - 0.033 12.7 0.8 0.054 12.0 0.2 1.6 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, major domain Hexapep PF00132.19 gi|435851927|ref|YP_007313513.1| - 4e-30 101.9 20.0 2.6e-09 36.1 2.3 5.2 5 0 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|435851927|ref|YP_007313513.1| - 4.4e-14 51.7 21.4 6.8e-06 25.5 0.2 5.1 5 0 0 5 5 5 4 Hexapeptide repeat of succinyl-transferase DUF457 PF04307.9 gi|435851928|ref|YP_007313514.1| - 2.2e-16 59.5 5.2 2.7e-16 59.2 3.6 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) YbjM PF11045.3 gi|435851928|ref|YP_007313514.1| - 0.016 14.9 0.1 0.025 14.3 0.1 1.4 1 0 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae FixQ PF05545.6 gi|435851928|ref|YP_007313514.1| - 2.2 8.0 7.2 0.28 10.8 1.3 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ ATP_bind_4 PF01902.12 gi|435851929|ref|YP_007313515.1| - 0.002 17.5 0.1 0.0076 15.6 0.0 2.0 2 1 0 2 2 2 1 ATP-binding region Asn_synthase PF00733.16 gi|435851929|ref|YP_007313515.1| - 0.012 15.1 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Tachystatin_A PF11406.3 gi|435851929|ref|YP_007313515.1| - 0.023 14.5 0.2 0.053 13.3 0.1 1.6 1 0 0 1 1 1 0 Antimicrobial peptide tachystatin A KASH PF10541.4 gi|435851929|ref|YP_007313515.1| - 0.11 12.3 0.2 0.27 11.1 0.2 1.6 1 0 0 1 1 1 0 Nuclear envelope localisation domain CTP_transf_2 PF01467.21 gi|435851930|ref|YP_007313516.1| - 1.3e-07 31.7 0.1 4.3e-07 30.1 0.0 1.9 2 1 0 2 2 2 1 Cytidylyltransferase DUF749 PF05370.6 gi|435851930|ref|YP_007313516.1| - 0.0088 15.9 0.1 0.021 14.7 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF749) CENP-M PF11111.3 gi|435851930|ref|YP_007313516.1| - 0.098 11.8 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Centromere protein M (CENP-M) TFR_dimer PF04253.10 gi|435851931|ref|YP_007313517.1| - 0.009 15.5 0.1 0.032 13.7 0.0 1.8 1 1 0 1 1 1 1 Transferrin receptor-like dimerisation domain HJURP_C PF12347.3 gi|435851931|ref|YP_007313517.1| - 0.16 11.5 0.6 0.34 10.5 0.4 1.5 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat Disaggr_repeat PF06848.6 gi|435851932|ref|YP_007313518.1| - 6.4e-228 749.2 26.9 7.6e-78 260.1 3.0 3.6 3 0 0 3 3 3 3 Disaggregatase related repeat PKD PF00801.15 gi|435851932|ref|YP_007313518.1| - 7e-38 128.2 55.4 3.3e-16 58.7 6.6 7.1 6 0 0 6 6 6 3 PKD domain TGFb_propeptide PF00688.13 gi|435851932|ref|YP_007313518.1| - 2.1e-12 46.8 0.0 1 8.6 0.0 6.1 6 0 0 6 6 6 5 TGF-beta propeptide DUF11 PF01345.13 gi|435851932|ref|YP_007313518.1| - 5.6e-12 45.5 110.6 0.0042 17.0 1.4 14.3 15 3 0 15 15 15 10 Domain of unknown function DUF11 Toxin_56 PF15534.1 gi|435851932|ref|YP_007313518.1| - 0.47 10.9 9.3 45 4.6 0.1 6.1 6 0 0 6 6 6 0 Putative toxin 56 DUF457 PF04307.9 gi|435851933|ref|YP_007313519.1| - 3.5e-25 88.1 11.9 5.8e-25 87.4 8.2 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) PsbK PF02533.10 gi|435851933|ref|YP_007313519.1| - 0.046 13.6 1.0 0.14 12.1 0.7 1.8 1 0 0 1 1 1 0 Photosystem II 4 kDa reaction centre component DUF4267 PF14087.1 gi|435851933|ref|YP_007313519.1| - 0.08 12.5 0.0 0.21 11.2 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4267) CoA_binding_2 PF13380.1 gi|435851934|ref|YP_007313520.1| - 0.015 15.4 0.0 0.017 15.2 0.0 1.1 1 0 0 1 1 1 0 CoA binding domain Dus PF01207.12 gi|435851934|ref|YP_007313520.1| - 0.059 12.1 0.0 0.068 11.9 0.0 1.1 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Molydop_binding PF01568.16 gi|435851935|ref|YP_007313521.1| - 1.4e-15 57.0 0.0 1.8e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|435851935|ref|YP_007313521.1| - 7.4e-05 22.6 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain TPP_enzyme_M PF00205.17 gi|435851936|ref|YP_007313522.1| - 0.0011 18.7 0.0 0.016 14.9 0.0 2.6 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|435851936|ref|YP_007313522.1| - 0.14 11.7 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit FeS PF04060.8 gi|435851937|ref|YP_007313523.1| - 4.1e-15 55.0 1.6 4.1e-15 55.0 1.1 2.5 3 0 0 3 3 2 1 Putative Fe-S cluster Fer4 PF00037.22 gi|435851937|ref|YP_007313523.1| - 4.8e-11 41.7 19.5 2.3e-08 33.2 3.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435851937|ref|YP_007313523.1| - 1.6e-09 37.9 27.9 2.2e-07 31.0 6.8 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435851937|ref|YP_007313523.1| - 3.5e-09 36.1 20.2 1.5e-06 27.8 2.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435851937|ref|YP_007313523.1| - 3.9e-08 33.1 20.6 3.8e-05 23.6 5.7 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435851937|ref|YP_007313523.1| - 1.1e-07 31.3 16.8 9e-07 28.4 1.8 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435851937|ref|YP_007313523.1| - 5.6e-07 29.2 15.5 8.8e-06 25.4 7.3 3.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435851937|ref|YP_007313523.1| - 2.8e-06 27.6 19.9 0.0029 17.9 7.8 2.9 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435851937|ref|YP_007313523.1| - 3.5e-05 23.5 12.7 8.3e-05 22.3 0.7 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435851937|ref|YP_007313523.1| - 5.2e-05 23.2 19.5 0.00024 21.1 1.8 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435851937|ref|YP_007313523.1| - 0.00021 21.9 18.8 0.00056 20.6 7.4 3.0 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|435851937|ref|YP_007313523.1| - 0.00039 20.7 0.6 0.00039 20.7 0.4 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435851937|ref|YP_007313523.1| - 0.0005 20.4 23.4 0.018 15.5 5.5 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|435851937|ref|YP_007313523.1| - 0.001 19.6 7.1 0.001 19.6 4.9 2.8 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|435851937|ref|YP_007313523.1| - 0.001 19.3 10.6 0.0014 18.9 2.8 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435851937|ref|YP_007313523.1| - 0.0019 18.5 14.8 0.0025 18.1 5.9 3.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|435851937|ref|YP_007313523.1| - 0.0045 16.8 11.0 3.2 7.6 7.7 3.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain YhfH PF14149.1 gi|435851937|ref|YP_007313523.1| - 0.015 15.1 1.1 0.015 15.1 0.8 2.5 2 0 0 2 2 2 0 YhfH-like protein NOB1_Zn_bind PF08772.6 gi|435851937|ref|YP_007313523.1| - 4.8 7.0 10.8 3.7 7.4 0.1 2.9 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like FYVE PF01363.16 gi|435851937|ref|YP_007313523.1| - 4.9 7.1 11.4 4.6e+02 0.7 7.9 2.6 1 1 0 1 1 1 0 FYVE zinc finger FeThRed_B PF02943.10 gi|435851938|ref|YP_007313524.1| - 2.5e-26 91.5 0.7 2.8e-26 91.3 0.5 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain ABC_tran PF00005.22 gi|435851940|ref|YP_007313526.1| - 9.1e-33 113.4 0.0 1.3e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435851940|ref|YP_007313526.1| - 1.3e-14 54.8 0.0 1.4e-07 31.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|435851940|ref|YP_007313526.1| - 1.9e-08 33.8 0.1 4.3e-08 32.6 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|435851940|ref|YP_007313526.1| - 2.2e-07 31.2 0.7 0.00053 20.2 0.0 2.6 2 1 1 3 3 2 2 AAA domain AAA_15 PF13175.1 gi|435851940|ref|YP_007313526.1| - 6.3e-06 25.4 0.0 0.034 13.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|435851940|ref|YP_007313526.1| - 0.0001 22.3 0.1 0.00032 20.7 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|435851940|ref|YP_007313526.1| - 0.00011 21.9 0.2 0.0015 18.4 0.0 2.5 2 1 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|435851940|ref|YP_007313526.1| - 0.00025 20.5 0.1 0.00048 19.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|435851940|ref|YP_007313526.1| - 0.00027 21.0 2.2 0.00028 21.0 0.1 2.1 2 1 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|435851940|ref|YP_007313526.1| - 0.00029 20.3 0.5 0.067 12.5 0.2 2.4 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|435851940|ref|YP_007313526.1| - 0.00076 18.9 0.1 0.11 11.9 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|435851940|ref|YP_007313526.1| - 0.0013 18.7 0.1 0.0013 18.7 0.0 2.2 2 1 0 3 3 2 1 AAA domain AAA_17 PF13207.1 gi|435851940|ref|YP_007313526.1| - 0.0016 19.2 0.6 0.0025 18.6 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|435851940|ref|YP_007313526.1| - 0.0019 17.7 0.0 0.056 12.8 0.0 2.1 1 1 0 2 2 2 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|435851940|ref|YP_007313526.1| - 0.0027 17.2 0.2 0.0058 16.1 0.0 1.6 2 0 0 2 2 1 1 FtsK/SpoIIIE family DUF258 PF03193.11 gi|435851940|ref|YP_007313526.1| - 0.0032 16.6 0.0 0.0066 15.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 NACHT PF05729.7 gi|435851940|ref|YP_007313526.1| - 0.01 15.5 0.0 0.025 14.2 0.0 1.7 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.1 gi|435851940|ref|YP_007313526.1| - 0.012 15.9 0.6 0.032 14.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|435851940|ref|YP_007313526.1| - 0.014 15.1 0.0 0.043 13.5 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|435851940|ref|YP_007313526.1| - 0.015 14.7 0.0 0.14 11.5 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein G-alpha PF00503.15 gi|435851940|ref|YP_007313526.1| - 0.023 13.4 0.0 0.027 13.1 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.1 gi|435851940|ref|YP_007313526.1| - 0.033 14.0 0.1 0.065 13.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain Pox_A32 PF04665.7 gi|435851940|ref|YP_007313526.1| - 0.041 13.1 0.1 0.11 11.8 0.0 1.7 2 0 0 2 2 2 0 Poxvirus A32 protein T2SE PF00437.15 gi|435851940|ref|YP_007313526.1| - 0.046 12.6 0.2 0.099 11.5 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|435851940|ref|YP_007313526.1| - 0.049 13.3 0.4 0.21 11.2 0.3 2.0 1 1 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|435851940|ref|YP_007313526.1| - 0.053 13.4 0.0 0.13 12.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain ATP-synt_ab PF00006.20 gi|435851940|ref|YP_007313526.1| - 0.053 13.0 0.0 0.054 12.9 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF3584 PF12128.3 gi|435851940|ref|YP_007313526.1| - 0.057 10.7 0.1 0.075 10.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Miro PF08477.8 gi|435851940|ref|YP_007313526.1| - 0.065 13.7 0.1 0.17 12.3 0.0 1.9 2 0 0 2 2 1 0 Miro-like protein AAA_30 PF13604.1 gi|435851940|ref|YP_007313526.1| - 0.065 12.7 0.5 0.17 11.4 0.1 1.9 1 1 1 2 2 1 0 AAA domain NB-ARC PF00931.17 gi|435851940|ref|YP_007313526.1| - 0.067 12.0 0.2 0.16 10.7 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain KaiC PF06745.8 gi|435851940|ref|YP_007313526.1| - 0.072 12.2 0.6 0.8 8.7 0.2 2.3 2 1 0 2 2 2 0 KaiC UPF0079 PF02367.12 gi|435851940|ref|YP_007313526.1| - 0.085 12.4 1.7 0.11 12.0 0.3 1.9 2 1 1 3 3 1 0 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|435851940|ref|YP_007313526.1| - 0.11 12.2 0.1 1.6 8.3 0.0 2.3 2 1 0 2 2 2 0 NTPase DUF87 PF01935.12 gi|435851940|ref|YP_007313526.1| - 0.18 11.5 0.8 0.78 9.5 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_19 PF13245.1 gi|435851940|ref|YP_007313526.1| - 0.27 11.0 3.6 0.6 9.9 0.1 2.5 1 1 1 2 2 2 0 Part of AAA domain AAA PF00004.24 gi|435851940|ref|YP_007313526.1| - 0.37 10.9 2.9 3.1 7.9 0.3 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FtsX PF02687.16 gi|435851941|ref|YP_007313527.1| - 1.4e-15 57.0 19.8 5.1e-15 55.2 10.8 2.4 2 0 0 2 2 2 2 FtsX-like permease family MacB_PCD PF12704.2 gi|435851941|ref|YP_007313527.1| - 1e-13 51.4 2.6 1e-13 51.4 1.8 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain CARDB PF07705.6 gi|435851942|ref|YP_007313528.1| - 4.5e-10 39.4 0.2 0.0005 20.0 0.0 3.4 3 0 0 3 3 3 3 CARDB Big_1 PF02369.11 gi|435851942|ref|YP_007313528.1| - 0.0053 16.6 0.0 0.023 14.6 0.0 2.1 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) DUF11 PF01345.13 gi|435851942|ref|YP_007313528.1| - 0.013 15.5 0.1 0.42 10.6 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function DUF11 Filamin PF00630.14 gi|435851942|ref|YP_007313528.1| - 0.025 15.1 0.5 0.84 10.2 0.3 3.0 1 1 0 1 1 1 0 Filamin/ABP280 repeat RAMP4 PF06624.7 gi|435851942|ref|YP_007313528.1| - 0.24 10.9 1.6 2.3 7.8 0.1 2.4 2 0 0 2 2 2 0 Ribosome associated membrane protein RAMP4 Disaggr_repeat PF06848.6 gi|435851943|ref|YP_007313529.1| - 5.1e-71 237.8 4.5 5.1e-71 237.8 3.1 2.3 2 0 0 2 2 2 1 Disaggregatase related repeat Big_1 PF02369.11 gi|435851943|ref|YP_007313529.1| - 1.1e-07 31.6 6.1 1.1e-07 31.6 4.2 3.1 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 1) TGFb_propeptide PF00688.13 gi|435851943|ref|YP_007313529.1| - 0.0005 19.4 0.0 0.55 9.4 0.0 2.3 2 0 0 2 2 2 2 TGF-beta propeptide NUDIX PF00293.23 gi|435851945|ref|YP_007313531.1| - 0.00043 19.9 0.0 0.00074 19.1 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain COMPASS-Shg1 PF05205.7 gi|435851946|ref|YP_007313532.1| - 0.054 13.7 1.3 0.081 13.2 0.9 1.3 1 0 0 1 1 1 0 COMPASS (Complex proteins associated with Set1p) component shg1 DUF3753 PF12575.3 gi|435851946|ref|YP_007313532.1| - 0.071 12.9 0.6 0.071 12.9 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) CHAT PF12770.2 gi|435851947|ref|YP_007313533.1| - 1.8e-19 69.9 0.0 2.8e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 CHAT domain TPR_12 PF13424.1 gi|435851947|ref|YP_007313533.1| - 4.2e-05 23.4 1.4 0.028 14.3 0.0 4.0 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|435851947|ref|YP_007313533.1| - 0.0028 17.4 2.3 0.65 10.0 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|435851947|ref|YP_007313533.1| - 0.1 12.2 10.2 0.35 10.5 0.1 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat Peptidase_M23 PF01551.17 gi|435851948|ref|YP_007313534.1| - 1.6e-16 60.1 1.4 4.2e-16 58.7 1.0 1.7 1 0 0 1 1 1 1 Peptidase family M23 He_PIG PF05345.7 gi|435851948|ref|YP_007313534.1| - 4.9e-07 29.6 10.9 2.9e-06 27.1 6.2 3.2 3 0 0 3 3 3 1 Putative Ig domain BACON PF13004.2 gi|435851948|ref|YP_007313534.1| - 1.3 9.3 8.4 3.5 7.9 5.8 1.9 1 1 0 1 1 1 0 Bacteroidetes-Associated Carbohydrate-binding Often N-terminal DUF98 PF01947.11 gi|435851949|ref|YP_007313535.1| - 2.7e-19 69.3 0.0 3.4e-19 69.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF98) Chor_lyase PF04345.8 gi|435851949|ref|YP_007313535.1| - 0.021 14.2 0.0 0.027 13.8 0.0 1.1 1 0 0 1 1 1 0 Chorismate lyase NGF PF00243.13 gi|435851950|ref|YP_007313536.1| - 0.074 12.7 0.2 0.097 12.4 0.1 1.2 1 0 0 1 1 1 0 Nerve growth factor family UCR_Fe-S_N PF10399.4 gi|435851950|ref|YP_007313536.1| - 0.15 11.2 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DPRP PF04244.8 gi|435851951|ref|YP_007313537.1| - 1.5e-48 165.3 0.0 2e-48 164.8 0.0 1.2 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|435851951|ref|YP_007313537.1| - 3.4e-12 46.1 0.0 6.3e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase Radical_SAM PF04055.16 gi|435851952|ref|YP_007313538.1| - 2.2e-11 44.1 0.0 1.5e-10 41.5 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|435851952|ref|YP_007313538.1| - 1.1e-07 31.9 0.0 1.9e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|435851952|ref|YP_007313538.1| - 1.6e-06 28.2 0.0 3.2e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Pyridox_oxidase PF01243.15 gi|435851953|ref|YP_007313539.1| - 1.8e-16 59.9 0.0 2.4e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase AIRS PF00586.19 gi|435851955|ref|YP_007313541.1| - 4.1e-21 75.0 0.4 8.9e-21 73.9 0.3 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|435851955|ref|YP_007313541.1| - 1.9e-14 53.9 0.0 3.1e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Radical_SAM PF04055.16 gi|435851956|ref|YP_007313542.1| - 4.8e-18 65.8 0.0 7.6e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|435851956|ref|YP_007313542.1| - 3.9e-05 23.6 0.0 0.00013 21.9 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|435851956|ref|YP_007313542.1| - 0.00065 19.8 0.1 0.0042 17.1 0.0 2.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain PTPS PF01242.14 gi|435851957|ref|YP_007313543.1| - 1e-30 105.9 0.3 1.2e-30 105.7 0.2 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Fer4_14 PF13394.1 gi|435851958|ref|YP_007313544.1| - 7.7e-13 48.5 0.1 1.6e-12 47.5 0.0 1.6 1 1 1 2 2 2 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|435851958|ref|YP_007313544.1| - 5.6e-12 46.1 0.1 8.6e-12 45.5 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|435851958|ref|YP_007313544.1| - 1e-08 35.3 0.0 2.2e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF366 PF04017.7 gi|435851959|ref|YP_007313545.1| - 3.1e-71 238.4 1.0 3.5e-71 238.2 0.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) QueC PF06508.8 gi|435851960|ref|YP_007313546.1| - 2.3e-54 183.8 0.0 2.6e-54 183.6 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|435851960|ref|YP_007313546.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase DUF523 PF04463.7 gi|435851961|ref|YP_007313547.1| - 5.3e-33 113.7 0.0 8.9e-33 113.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|435851961|ref|YP_007313547.1| - 2.8e-31 107.8 0.2 4.3e-31 107.2 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) Zn_Tnp_IS1595 PF12760.2 gi|435851962|ref|YP_007313548.1| - 2.1e-07 30.5 0.0 2.7e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|435851962|ref|YP_007313548.1| - 0.0028 17.9 0.2 0.0046 17.2 0.2 1.5 1 1 0 1 1 1 1 Restriction alleviation protein Lar RecR PF02132.10 gi|435851962|ref|YP_007313548.1| - 0.0033 16.8 0.2 2 7.9 0.0 2.3 2 0 0 2 2 2 2 RecR protein A2L_zn_ribbon PF08792.5 gi|435851962|ref|YP_007313548.1| - 0.0061 15.9 2.6 0.014 14.8 1.8 1.6 1 1 0 1 1 1 1 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|435851962|ref|YP_007313548.1| - 0.0077 15.5 4.4 0.037 13.3 3.0 2.1 1 1 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|435851962|ref|YP_007313548.1| - 0.012 15.5 1.8 1.1 9.2 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|435851962|ref|YP_007313548.1| - 0.019 14.6 1.2 0.047 13.3 0.8 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|435851962|ref|YP_007313548.1| - 0.02 14.0 2.1 2.2 7.6 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|435851962|ref|YP_007313548.1| - 0.028 14.3 0.3 6.6 6.6 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin C1_2 PF03107.11 gi|435851962|ref|YP_007313548.1| - 0.031 14.3 0.5 0.12 12.5 0.0 1.9 2 0 0 2 2 2 0 C1 domain zf-ISL3 PF14690.1 gi|435851962|ref|YP_007313548.1| - 0.035 14.1 0.7 4.3 7.4 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF164 PF02591.10 gi|435851962|ref|YP_007313548.1| - 0.059 13.2 0.7 11 5.9 0.0 2.3 1 1 1 2 2 2 0 Putative zinc ribbon domain TFIIS_C PF01096.13 gi|435851962|ref|YP_007313548.1| - 0.06 12.9 2.8 1.8 8.2 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|435851962|ref|YP_007313548.1| - 0.067 12.8 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.1 gi|435851962|ref|YP_007313548.1| - 0.095 11.9 1.0 0.18 11.0 0.5 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-NADH-PPase PF09297.6 gi|435851962|ref|YP_007313548.1| - 0.11 12.0 1.0 2.5 7.6 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-HIT PF04438.11 gi|435851962|ref|YP_007313548.1| - 0.27 10.9 2.3 12 5.6 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger Cys_rich_CPXG PF14255.1 gi|435851962|ref|YP_007313548.1| - 0.31 10.8 1.9 13 5.6 0.2 2.3 2 1 0 2 2 2 0 Cysteine-rich CPXCG Nudix_N_2 PF14803.1 gi|435851962|ref|YP_007313548.1| - 0.34 10.6 3.3 11 5.8 0.4 2.1 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|435851962|ref|YP_007313548.1| - 0.59 9.6 4.1 8.7 5.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RRN7 PF11781.3 gi|435851962|ref|YP_007313548.1| - 2.4 7.7 5.5 13 5.3 3.8 2.1 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 UPF0547 PF10571.4 gi|435851962|ref|YP_007313548.1| - 3.5 7.3 5.3 11 5.7 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF3797 PF12677.2 gi|435851962|ref|YP_007313548.1| - 5.3 6.7 8.0 0.54 9.9 0.1 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) Rad50_zn_hook PF04423.9 gi|435851962|ref|YP_007313548.1| - 5.5 6.5 8.5 8.5 5.9 3.9 2.5 2 1 0 2 2 2 0 Rad50 zinc hook motif Ribosomal_S3Ae PF01015.13 gi|435851963|ref|YP_007313549.1| - 1.3e-73 246.4 4.0 1.4e-73 246.3 2.8 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DUF2584 PF10763.4 gi|435851963|ref|YP_007313549.1| - 0.0077 16.0 0.6 0.028 14.2 0.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2584) DUF3672 PF12421.3 gi|435851963|ref|YP_007313549.1| - 0.13 12.4 0.7 0.24 11.5 0.4 1.3 1 1 0 1 1 1 0 Fibronectin type III protein tRNA-synt_2b PF00587.20 gi|435851964|ref|YP_007313550.1| - 8e-12 45.0 0.0 1.4e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Fez1 PF06818.10 gi|435851964|ref|YP_007313550.1| - 0.3 11.0 1.4 0.47 10.4 0.1 1.9 2 0 0 2 2 2 0 Fez1 MRP-L28 PF09812.4 gi|435851965|ref|YP_007313551.1| - 0.011 15.5 1.0 0.026 14.3 0.7 1.6 1 1 1 2 2 2 0 Mitochondrial ribosomal protein L28 Transglut_core PF01841.14 gi|435851966|ref|YP_007313552.1| - 0.0024 18.0 0.0 0.0048 17.0 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4131 PF13567.1 gi|435851966|ref|YP_007313552.1| - 0.014 14.7 0.1 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2208 PF09973.4 gi|435851966|ref|YP_007313552.1| - 0.063 12.5 0.5 0.1 11.8 0.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) ApbA_C PF08546.6 gi|435851967|ref|YP_007313553.1| - 3.7e-34 117.4 0.0 5.5e-34 116.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|435851967|ref|YP_007313553.1| - 7.4e-26 90.4 0.0 1.1e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|435851967|ref|YP_007313553.1| - 4.2e-05 23.3 0.3 0.0014 18.3 0.1 2.9 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATHILA PF03078.10 gi|435851967|ref|YP_007313553.1| - 0.00082 18.0 0.1 0.0012 17.5 0.1 1.1 1 0 0 1 1 1 1 ATHILA ORF-1 family F420_oxidored PF03807.12 gi|435851967|ref|YP_007313553.1| - 0.044 14.2 0.2 0.8 10.1 0.1 2.4 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.1 gi|435851967|ref|YP_007313553.1| - 0.11 12.5 0.2 0.23 11.5 0.1 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain UDG PF03167.14 gi|435851968|ref|YP_007313554.1| - 9.5e-38 129.0 0.0 1.3e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DHH PF01368.15 gi|435851970|ref|YP_007313556.1| - 4.7e-17 61.9 0.7 7.5e-17 61.3 0.3 1.5 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|435851970|ref|YP_007313556.1| - 7.1e-13 48.0 0.6 2.2e-12 46.4 0.4 1.9 1 0 0 1 1 1 1 DHHA1 domain NTP_transferase PF00483.18 gi|435851971|ref|YP_007313557.1| - 3.7e-44 150.8 0.0 5e-44 150.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|435851971|ref|YP_007313557.1| - 8.3e-17 61.7 0.0 1.1e-16 61.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|435851971|ref|YP_007313557.1| - 5.2e-16 57.3 33.6 4.4e-08 32.2 4.0 4.7 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|435851971|ref|YP_007313557.1| - 4.1e-08 32.6 4.7 4.1e-08 32.6 3.3 4.6 5 0 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|435851971|ref|YP_007313557.1| - 3.6e-05 23.4 0.0 0.0001 21.9 0.0 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|435851971|ref|YP_007313557.1| - 0.00047 19.8 0.0 0.0014 18.3 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase PGM_PMM_I PF02878.11 gi|435851972|ref|YP_007313558.1| - 4.7e-38 129.7 0.0 8.7e-38 128.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|435851972|ref|YP_007313558.1| - 7.6e-25 87.2 0.0 1.7e-24 86.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|435851972|ref|YP_007313558.1| - 3.2e-17 62.5 0.0 7.5e-17 61.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|435851972|ref|YP_007313558.1| - 2.5e-11 43.4 0.1 5.5e-11 42.3 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain SIS PF01380.17 gi|435851973|ref|YP_007313559.1| - 3.4e-52 175.5 1.9 1.3e-25 89.5 0.1 2.6 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|435851973|ref|YP_007313559.1| - 6.1e-23 81.2 0.1 2.1e-22 79.5 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|435851973|ref|YP_007313559.1| - 3.9e-22 78.4 0.4 1.3e-16 60.2 0.1 2.5 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|435851973|ref|YP_007313559.1| - 3.3e-18 65.6 0.0 6.5e-17 61.4 0.0 2.3 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|435851973|ref|YP_007313559.1| - 3e-06 26.1 0.1 5e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Rep_2 PF01719.12 gi|435851973|ref|YP_007313559.1| - 0.039 13.4 0.1 0.076 12.5 0.1 1.4 1 0 0 1 1 1 0 Plasmid replication protein NTP_transferase PF00483.18 gi|435851974|ref|YP_007313560.1| - 1.1e-38 132.9 0.0 1.5e-38 132.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|435851974|ref|YP_007313560.1| - 1.4e-15 55.9 33.9 7.3e-08 31.5 1.3 4.9 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|435851974|ref|YP_007313560.1| - 1.7e-12 47.7 0.0 2.2e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|435851974|ref|YP_007313560.1| - 7.4e-10 38.2 27.8 3.7e-06 26.3 3.7 4.5 3 1 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|435851974|ref|YP_007313560.1| - 0.0068 15.9 0.0 0.013 15.0 0.0 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.7 gi|435851974|ref|YP_007313560.1| - 0.08 11.4 1.2 0.56 8.7 0.1 2.2 1 1 0 2 2 2 0 L-fucokinase Ribosomal_S13_N PF08069.7 gi|435851975|ref|YP_007313561.1| - 2.2e-25 88.2 3.5 3.8e-25 87.4 2.0 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|435851975|ref|YP_007313561.1| - 1.1e-18 66.7 0.2 1.5e-18 66.3 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 SPC22 PF04573.7 gi|435851977|ref|YP_007313563.1| - 0.13 11.4 0.1 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Signal peptidase subunit tRNA-synt_His PF13393.1 gi|435851980|ref|YP_007313566.1| - 1.4e-65 221.4 0.0 1.6e-65 221.1 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|435851980|ref|YP_007313566.1| - 1.9e-24 86.1 0.0 3e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|435851980|ref|YP_007313566.1| - 2.1e-10 40.3 0.0 3.8e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|435851980|ref|YP_007313566.1| - 0.00021 20.2 0.7 0.39 9.4 0.1 2.5 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|435851980|ref|YP_007313566.1| - 0.0015 17.7 0.0 0.022 13.9 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) PALP PF00291.20 gi|435851981|ref|YP_007313567.1| - 3.6e-35 121.6 0.0 4.7e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme MS_channel PF00924.13 gi|435851982|ref|YP_007313568.1| - 8.3e-43 146.1 1.3 1.5e-42 145.3 0.9 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel UPF0182 PF03699.8 gi|435851982|ref|YP_007313568.1| - 0.0088 14.0 1.5 0.011 13.7 1.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) DEAD PF00270.24 gi|435851983|ref|YP_007313569.1| - 4e-29 101.2 0.1 2.6e-28 98.6 0.0 2.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|435851983|ref|YP_007313569.1| - 5e-10 39.3 0.1 2.7e-09 37.0 0.0 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|435851983|ref|YP_007313569.1| - 1.7e-09 37.4 0.0 5.3e-09 35.8 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|435851983|ref|YP_007313569.1| - 1.3e-06 28.3 0.0 2.8e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|435851983|ref|YP_007313569.1| - 0.00045 20.0 0.2 0.0018 18.0 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif Sec63 PF02889.11 gi|435851983|ref|YP_007313569.1| - 0.00051 19.3 0.0 0.00078 18.7 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain DNA_pol_lambd_f PF10391.4 gi|435851983|ref|YP_007313569.1| - 0.0056 16.1 0.0 0.03 13.8 0.0 2.3 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|435851983|ref|YP_007313569.1| - 0.0092 15.6 0.0 5.9 6.7 0.0 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif HemN_C PF06969.11 gi|435851983|ref|YP_007313569.1| - 0.012 15.6 0.2 0.039 14.0 0.1 1.9 1 0 0 1 1 1 0 HemN C-terminal domain ANF_receptor PF01094.23 gi|435851983|ref|YP_007313569.1| - 0.031 13.0 0.0 0.059 12.1 0.0 1.4 1 0 0 1 1 1 0 Receptor family ligand binding region Histidinol_dh PF00815.15 gi|435851984|ref|YP_007313570.1| - 8.2e-167 554.9 7.6 9.7e-167 554.7 5.3 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DUF2963 PF11178.3 gi|435851984|ref|YP_007313570.1| - 0.12 11.8 0.0 0.29 10.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2963) DUF1699 PF08004.6 gi|435851985|ref|YP_007313571.1| - 5.1e-66 220.1 2.6 5.8e-66 219.9 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) LKAAEAR PF15478.1 gi|435851985|ref|YP_007313571.1| - 0.016 15.4 0.5 0.024 14.8 0.0 1.5 2 0 0 2 2 2 0 Family of unknown function with LKAAEAR motif TP_methylase PF00590.15 gi|435851986|ref|YP_007313572.1| - 2.5e-52 177.6 0.0 2.9e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.10 gi|435851987|ref|YP_007313573.1| - 1.7e-45 155.0 0.0 2e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Peripla_BP_6 PF13458.1 gi|435851987|ref|YP_007313573.1| - 0.027 13.8 0.0 0.41 9.9 0.0 2.2 2 1 0 2 2 2 0 Periplasmic binding protein Nitro_FeMo-Co PF02579.12 gi|435851987|ref|YP_007313573.1| - 0.086 12.9 0.1 5.1 7.2 0.0 2.4 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Radical_SAM PF04055.16 gi|435851988|ref|YP_007313574.1| - 1.6e-26 93.4 0.1 6e-26 91.5 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|435851988|ref|YP_007313574.1| - 8.7e-13 48.5 0.0 1.7e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|435851988|ref|YP_007313574.1| - 1e-10 41.6 0.0 1.9e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Pterin_bind PF00809.17 gi|435851988|ref|YP_007313574.1| - 0.11 11.8 0.0 6.4 6.0 0.0 2.2 1 1 1 2 2 2 0 Pterin binding enzyme Glyco_hydro_97 PF10566.4 gi|435851988|ref|YP_007313574.1| - 0.12 11.4 0.0 0.23 10.5 0.0 1.5 1 1 0 1 1 1 0 Glycoside hydrolase 97 Desulfoferrodox PF01880.13 gi|435851989|ref|YP_007313575.1| - 1.1e-22 80.1 0.8 1.2e-22 79.9 0.6 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin Cutinase PF01083.17 gi|435851989|ref|YP_007313575.1| - 0.091 12.4 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Cutinase tRNA-synt_1 PF00133.17 gi|435851990|ref|YP_007313576.1| - 3e-132 441.6 3.8 2.2e-131 438.8 2.6 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|435851990|ref|YP_007313576.1| - 2.2e-36 124.8 0.0 4.1e-36 124.0 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|435851990|ref|YP_007313576.1| - 1.7e-26 92.8 0.9 2.7e-13 49.3 0.0 3.7 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|435851990|ref|YP_007313576.1| - 3.1e-06 26.5 0.0 0.0033 16.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|435851990|ref|YP_007313576.1| - 3.3e-05 23.2 0.0 0.00035 19.9 0.0 2.2 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.14 gi|435851990|ref|YP_007313576.1| - 0.14 10.9 0.0 16 4.1 0.0 2.5 2 1 0 2 2 2 0 tRNA synthetases class I (R) RRN7 PF11781.3 gi|435851990|ref|YP_007313576.1| - 0.26 10.8 1.8 2.5 7.6 0.1 2.6 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 PUA PF01472.15 gi|435851991|ref|YP_007313577.1| - 2.3e-17 62.4 0.7 4.4e-17 61.5 0.5 1.5 1 0 0 1 1 1 1 PUA domain DUF552 PF04472.7 gi|435851992|ref|YP_007313578.1| - 4.5e-16 58.5 1.2 6.5e-16 58.0 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) zf-ZPR1 PF03367.8 gi|435851993|ref|YP_007313579.1| - 7.7e-40 135.6 0.1 1e-39 135.3 0.1 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Nse4-Nse3_bdg PF15412.1 gi|435851993|ref|YP_007313579.1| - 0.062 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Binding domain of Nse4/EID3 to Nse3-MAGE AhpC-TSA PF00578.16 gi|435851994|ref|YP_007313580.1| - 2e-30 105.0 0.0 2.7e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|435851994|ref|YP_007313580.1| - 1.4e-13 50.2 0.2 2.8e-13 49.2 0.2 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|435851994|ref|YP_007313580.1| - 9.5e-08 31.7 0.0 1.2e-06 28.0 0.0 2.0 1 1 0 1 1 1 1 Redoxin HGTP_anticodon PF03129.15 gi|435851995|ref|YP_007313581.1| - 3.5e-22 78.1 0.1 6.5e-22 77.2 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|435851995|ref|YP_007313581.1| - 8.9e-21 74.2 0.0 6.6e-20 71.3 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|435851995|ref|YP_007313581.1| - 1.1e-18 66.8 0.2 3.5e-18 65.2 0.0 1.9 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal UPF0150 PF03681.10 gi|435851995|ref|YP_007313581.1| - 0.044 13.4 0.1 0.13 11.9 0.1 1.9 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) DUF384 PF04064.8 gi|435851995|ref|YP_007313581.1| - 0.12 12.0 0.2 11 5.7 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF384) DBI_PRT PF02277.12 gi|435851996|ref|YP_007313582.1| - 3.2e-26 92.2 1.1 4.4e-26 91.7 0.7 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase Response_reg PF00072.19 gi|435851998|ref|YP_007313584.1| - 2.2e-26 92.0 0.1 5e-26 90.9 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|435851998|ref|YP_007313584.1| - 2e-13 50.6 0.1 1.2e-12 48.1 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|435851998|ref|YP_007313584.1| - 1.9e-11 43.7 0.0 3.9e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|435851998|ref|YP_007313584.1| - 9.3e-11 41.7 0.0 2.2e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|435851998|ref|YP_007313584.1| - 1.2e-08 34.9 0.0 3.5e-08 33.4 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_10 PF13596.1 gi|435851998|ref|YP_007313584.1| - 0.049 13.9 0.1 0.15 12.3 0.0 1.9 2 0 0 2 2 2 0 PAS domain Ribosomal_L15e PF00827.12 gi|435851999|ref|YP_007313585.1| - 8.1e-84 279.9 10.9 9.5e-84 279.6 7.6 1.0 1 0 0 1 1 1 1 Ribosomal L15 OpcA_G6PD_assem PF10128.4 gi|435851999|ref|YP_007313585.1| - 0.071 12.0 0.7 0.11 11.3 0.5 1.2 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase subunit RNA_binding PF01877.12 gi|435852000|ref|YP_007313586.1| - 7e-33 113.1 0.9 9.3e-33 112.7 0.6 1.2 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.11 gi|435852001|ref|YP_007313587.1| - 6.9e-35 119.4 0.0 8.4e-35 119.2 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 DCX PF03607.12 gi|435852001|ref|YP_007313587.1| - 0.11 12.1 0.0 4.6 6.9 0.0 2.5 2 0 0 2 2 2 0 Doublecortin Amidohydro_4 PF13147.1 gi|435852001|ref|YP_007313587.1| - 0.12 12.4 0.1 0.32 10.9 0.0 1.6 2 0 0 2 2 2 0 Amidohydrolase gp32 PF08804.5 gi|435852001|ref|YP_007313587.1| - 0.17 12.0 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 gp32 DNA binding protein like RNase_P_Rpp14 PF01900.14 gi|435852002|ref|YP_007313588.1| - 1.6e-21 76.1 0.3 1.9e-21 75.9 0.2 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family NPR1_like_C PF12313.3 gi|435852002|ref|YP_007313588.1| - 0.048 13.0 0.0 0.052 12.9 0.0 1.1 1 0 0 1 1 1 0 NPR1/NIM1 like defence protein C terminal Proteasome PF00227.21 gi|435852003|ref|YP_007313589.1| - 6e-60 201.7 0.4 9e-60 201.2 0.3 1.3 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|435852003|ref|YP_007313589.1| - 3.7e-15 54.9 0.4 1.3e-14 53.2 0.1 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature PDT PF00800.13 gi|435852003|ref|YP_007313589.1| - 0.093 12.2 0.1 0.25 10.8 0.0 1.8 1 1 0 1 1 1 0 Prephenate dehydratase SBDS PF01172.13 gi|435852004|ref|YP_007313590.1| - 1.7e-24 85.3 0.5 2.7e-24 84.7 0.3 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|435852004|ref|YP_007313590.1| - 2.3e-24 85.4 0.1 3.5e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain KH_1 PF00013.24 gi|435852005|ref|YP_007313591.1| - 4.3e-10 39.0 0.0 1.1e-09 37.7 0.0 1.7 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.1 gi|435852005|ref|YP_007313591.1| - 7e-09 34.8 0.1 1.2e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|435852005|ref|YP_007313591.1| - 5.7e-05 23.1 1.0 0.0018 18.3 0.0 2.8 3 1 0 3 3 3 1 S1 RNA binding domain KH_3 PF13014.1 gi|435852005|ref|YP_007313591.1| - 0.00022 20.8 0.1 0.00066 19.2 0.0 1.9 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|435852005|ref|YP_007313591.1| - 0.0024 17.4 0.5 0.014 14.9 0.0 2.5 2 1 0 2 2 2 1 KH domain RNase_PH PF01138.16 gi|435852006|ref|YP_007313592.1| - 1e-32 113.2 0.0 1.7e-32 112.5 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|435852006|ref|YP_007313592.1| - 1.1e-18 66.8 0.4 1.1e-18 66.8 0.3 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|435852007|ref|YP_007313593.1| - 6.7e-29 100.8 0.0 1.1e-28 100.1 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|435852007|ref|YP_007313593.1| - 3.2e-12 46.2 0.8 6.2e-12 45.2 0.5 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.14 gi|435852008|ref|YP_007313594.1| - 7.2e-31 105.9 1.7 8.1e-31 105.7 1.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family C1_1 PF00130.17 gi|435852008|ref|YP_007313594.1| - 0.0017 18.0 0.7 0.0025 17.4 0.5 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|435852008|ref|YP_007313594.1| - 0.0027 17.4 2.5 0.0042 16.8 1.7 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|435852008|ref|YP_007313594.1| - 0.0049 17.0 0.3 0.98 9.8 0.0 2.3 2 0 0 2 2 2 1 Zinc-finger double domain OrfB_Zn_ribbon PF07282.6 gi|435852008|ref|YP_007313594.1| - 0.024 14.2 0.4 0.036 13.7 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rep_fac-A_C PF08646.5 gi|435852008|ref|YP_007313594.1| - 0.11 12.1 0.2 0.15 11.7 0.1 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain RNA_POL_M_15KD PF02150.11 gi|435852008|ref|YP_007313594.1| - 0.12 12.0 0.2 0.56 9.9 0.0 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.5 gi|435852008|ref|YP_007313594.1| - 0.15 12.0 2.8 6.6 6.7 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|435852009|ref|YP_007313595.1| - 3.8e-08 32.6 9.3 5.8e-08 32.0 6.4 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DUF951 PF06107.6 gi|435852009|ref|YP_007313595.1| - 0.00072 19.0 4.5 0.034 13.6 0.2 2.0 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF951) zinc_ribbon_6 PF14599.1 gi|435852009|ref|YP_007313595.1| - 0.01 15.6 1.5 0.013 15.2 1.0 1.2 1 0 0 1 1 1 1 Zinc-ribbon HypA PF01155.14 gi|435852009|ref|YP_007313595.1| - 0.013 15.2 0.3 0.013 15.2 0.2 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|435852009|ref|YP_007313595.1| - 0.021 14.7 1.4 2.7 8.0 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF2072 PF09845.4 gi|435852009|ref|YP_007313595.1| - 0.023 14.6 0.7 0.023 14.6 0.5 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zinc_ribbon_2 PF13240.1 gi|435852009|ref|YP_007313595.1| - 0.035 13.5 1.4 0.16 11.4 1.1 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zf-FCS PF06467.9 gi|435852009|ref|YP_007313595.1| - 0.035 13.7 0.6 0.28 10.8 0.0 2.0 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif C1_1 PF00130.17 gi|435852009|ref|YP_007313595.1| - 0.035 13.8 2.0 3 7.6 0.2 1.8 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Desulfoferrod_N PF06397.7 gi|435852009|ref|YP_007313595.1| - 0.038 13.3 3.8 0.3 10.5 0.4 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain A2L_zn_ribbon PF08792.5 gi|435852009|ref|YP_007313595.1| - 0.042 13.3 2.5 0.64 9.5 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain ZZ PF00569.12 gi|435852009|ref|YP_007313595.1| - 0.042 13.4 4.1 0.59 9.7 0.4 2.0 1 1 1 2 2 2 0 Zinc finger, ZZ type Arc_trans_TRASH PF08394.5 gi|435852009|ref|YP_007313595.1| - 0.048 13.8 0.1 0.048 13.8 0.0 1.9 2 0 0 2 2 2 0 Archaeal TRASH domain zf-ribbon_3 PF13248.1 gi|435852009|ref|YP_007313595.1| - 0.057 12.6 0.3 4.4 6.6 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.16 gi|435852009|ref|YP_007313595.1| - 0.065 13.1 0.8 0.077 12.8 0.6 1.1 1 0 0 1 1 1 0 IBR domain zf-AN1 PF01428.11 gi|435852009|ref|YP_007313595.1| - 0.067 13.0 1.4 0.19 11.6 1.1 1.6 1 1 1 2 2 2 0 AN1-like Zinc finger zf-TFIIB PF13453.1 gi|435852009|ref|YP_007313595.1| - 0.091 11.9 1.1 0.12 11.5 0.8 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-ISL3 PF14690.1 gi|435852009|ref|YP_007313595.1| - 0.094 12.7 2.2 0.53 10.3 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2197 PF09963.4 gi|435852009|ref|YP_007313595.1| - 0.1 12.5 1.9 3.3 7.7 0.2 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) zinc_ribbon_5 PF13719.1 gi|435852009|ref|YP_007313595.1| - 0.12 12.0 4.0 2.1 8.0 2.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|435852009|ref|YP_007313595.1| - 0.13 11.9 4.2 2.8 7.7 2.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|435852009|ref|YP_007313595.1| - 0.14 11.8 2.4 5.6 6.6 0.3 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) PyrI_C PF02748.10 gi|435852009|ref|YP_007313595.1| - 0.16 11.4 0.2 0.16 11.4 0.1 2.0 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Zn_Tnp_IS1595 PF12760.2 gi|435852009|ref|YP_007313595.1| - 0.19 11.5 2.3 7.4 6.4 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain CpXC PF14353.1 gi|435852009|ref|YP_007313595.1| - 0.35 10.8 1.5 8 6.4 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zf-FPG_IleRS PF06827.9 gi|435852009|ref|YP_007313595.1| - 0.58 9.8 4.5 1.2 8.8 0.3 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS UPF0547 PF10571.4 gi|435852009|ref|YP_007313595.1| - 2.5 7.8 6.7 11 5.8 3.7 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Mu-like_Com PF10122.4 gi|435852009|ref|YP_007313595.1| - 4 6.5 7.5 4.6 6.3 0.3 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com Brix PF04427.13 gi|435852010|ref|YP_007313596.1| - 1.2e-09 38.1 0.0 1.4e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Brix domain Pcc1 PF09341.5 gi|435852011|ref|YP_007313597.1| - 3.6e-16 58.9 0.7 4e-16 58.8 0.5 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|435852012|ref|YP_007313598.1| - 2e-21 75.7 21.6 2.3e-21 75.5 15.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF948 PF06103.6 gi|435852012|ref|YP_007313598.1| - 0.011 15.6 10.4 0.043 13.6 0.7 2.4 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) THOC7 PF05615.8 gi|435852012|ref|YP_007313598.1| - 0.14 12.3 11.8 0.77 10.0 8.2 1.9 1 1 0 1 1 1 0 Tho complex subunit 7 AKNA PF12443.3 gi|435852012|ref|YP_007313598.1| - 0.18 11.8 14.1 0.47 10.4 9.8 1.8 1 1 0 1 1 1 0 AT-hook-containing transcription factor Nup54 PF13874.1 gi|435852012|ref|YP_007313598.1| - 0.19 11.3 17.0 1.8 8.2 11.8 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 V_ATPase_I PF01496.14 gi|435852012|ref|YP_007313598.1| - 0.21 9.4 8.7 0.26 9.0 6.0 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Spc7 PF08317.6 gi|435852012|ref|YP_007313598.1| - 0.25 9.9 14.1 0.29 9.7 9.7 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF1040 PF06288.8 gi|435852012|ref|YP_007313598.1| - 0.28 11.4 2.4 0.41 10.8 1.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1040) ubiquitin PF00240.18 gi|435852012|ref|YP_007313598.1| - 0.41 10.0 0.1 0.41 10.0 0.1 2.7 3 0 0 3 3 3 0 Ubiquitin family Binary_toxB PF03495.9 gi|435852012|ref|YP_007313598.1| - 0.66 8.5 3.8 0.8 8.2 2.7 1.0 1 0 0 1 1 1 0 Clostridial binary toxin B/anthrax toxin PA DUF342 PF03961.8 gi|435852012|ref|YP_007313598.1| - 2.1 6.6 11.6 2.4 6.4 8.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Laminin_II PF06009.7 gi|435852012|ref|YP_007313598.1| - 2.3 7.9 14.1 19 4.9 9.7 2.0 1 1 0 1 1 1 0 Laminin Domain II DUF4559 PF15112.1 gi|435852012|ref|YP_007313598.1| - 3.7 6.6 8.2 4.2 6.4 5.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Seryl_tRNA_N PF02403.17 gi|435852012|ref|YP_007313598.1| - 4.2 7.4 14.0 2.8 7.9 2.1 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Med10 PF09748.4 gi|435852012|ref|YP_007313598.1| - 5.3 6.8 9.9 97 2.7 6.9 2.1 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex UN_NPL4 PF11543.3 gi|435852012|ref|YP_007313598.1| - 6.1 7.2 9.5 12 6.2 0.8 2.8 1 1 1 2 2 2 0 Nuclear pore localisation protein NPL4 DUF3552 PF12072.3 gi|435852012|ref|YP_007313598.1| - 6.4 5.9 19.6 2.1 7.5 4.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Syntaxin PF00804.20 gi|435852012|ref|YP_007313598.1| - 7.3 6.8 18.5 6.3 7.0 3.4 2.3 1 1 0 2 2 2 0 Syntaxin Tropomyosin_1 PF12718.2 gi|435852012|ref|YP_007313598.1| - 8.1 6.2 18.1 3.9e+02 0.8 12.5 2.1 1 1 0 1 1 1 0 Tropomyosin like CDC37_N PF03234.9 gi|435852012|ref|YP_007313598.1| - 8.8 6.6 13.8 5.6 7.2 2.2 2.0 1 1 1 2 2 2 0 Cdc37 N terminal kinase binding DHH PF01368.15 gi|435852013|ref|YP_007313599.1| - 1.1e-12 47.8 0.2 4.5e-12 45.8 0.1 1.9 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|435852013|ref|YP_007313599.1| - 1.9e-09 37.1 1.1 4.4e-09 35.8 0.5 1.8 2 0 0 2 2 2 1 DHHA1 domain FliG_M PF14841.1 gi|435852013|ref|YP_007313599.1| - 0.1 12.6 0.2 0.49 10.4 0.0 2.0 2 0 0 2 2 2 0 FliG middle domain AMP-binding_C_2 PF14535.1 gi|435852014|ref|YP_007313600.1| - 1.6e-31 108.1 0.5 3.8e-31 106.9 0.3 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|435852014|ref|YP_007313600.1| - 2.1e-18 65.9 1.1 7.9e-18 64.0 0.8 1.8 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|435852014|ref|YP_007313600.1| - 5e-08 32.0 0.0 7.2e-06 24.9 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|435852014|ref|YP_007313600.1| - 0.016 13.7 0.0 0.39 9.1 0.0 2.2 2 0 0 2 2 2 0 GH3 auxin-responsive promoter ACT PF01842.20 gi|435852015|ref|YP_007313601.1| - 1.9e-16 59.1 0.6 2.8e-08 33.0 0.1 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|435852015|ref|YP_007313601.1| - 3.6e-07 30.4 0.1 0.014 15.7 0.0 2.3 2 1 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|435852015|ref|YP_007313601.1| - 1.2e-05 24.6 0.4 0.018 14.5 0.1 2.6 2 1 0 2 2 2 2 ACT domain DUF2103 PF09876.4 gi|435852016|ref|YP_007313602.1| - 6.2e-37 125.4 1.3 7.1e-37 125.3 0.9 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) DUF1464 PF07318.7 gi|435852017|ref|YP_007313603.1| - 0.00025 19.9 1.1 0.0021 16.9 0.8 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1464) Glyco_trans_1_4 PF13692.1 gi|435852018|ref|YP_007313604.1| - 4.8e-34 117.4 0.0 2.4e-16 60.1 0.0 2.5 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|435852018|ref|YP_007313604.1| - 3.2e-32 111.2 0.8 5e-24 84.6 0.0 3.1 3 0 0 3 3 3 2 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|435852018|ref|YP_007313604.1| - 6e-19 68.1 0.0 1.2e-09 38.3 0.0 2.8 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|435852018|ref|YP_007313604.1| - 1.5e-09 37.7 0.1 1.1e-05 25.2 0.0 3.4 3 0 0 3 3 3 2 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|435852018|ref|YP_007313604.1| - 0.00039 20.5 0.0 0.00094 19.3 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|435852019|ref|YP_007313605.1| - 1.2e-16 60.5 0.0 2.1e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|435852019|ref|YP_007313605.1| - 3e-12 46.6 0.0 1.9e-11 44.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|435852019|ref|YP_007313605.1| - 7e-09 35.9 0.0 1.3e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 LVIVD PF08309.6 gi|435852020|ref|YP_007313606.1| - 1.1e-123 401.9 85.3 1.1e-15 56.3 1.8 14.4 14 0 0 14 14 14 14 LVIVD repeat Beta_propel PF09826.4 gi|435852020|ref|YP_007313606.1| - 5.6e-11 41.4 1.9 0.015 13.6 0.4 4.9 1 1 2 3 3 3 3 Beta propeller domain CPSF_A PF03178.10 gi|435852020|ref|YP_007313606.1| - 2.3e-06 26.9 1.9 1.1 8.2 0.0 4.2 3 1 1 4 4 4 3 CPSF A subunit region VCBS PF13517.1 gi|435852020|ref|YP_007313606.1| - 0.001 19.3 4.4 0.001 19.3 3.1 8.7 2 2 6 8 8 8 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella DUF1726 PF08351.6 gi|435852020|ref|YP_007313606.1| - 0.099 12.3 0.1 14 5.4 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1726) Cupin_2 PF07883.6 gi|435852021|ref|YP_007313607.1| - 3.7e-15 55.1 0.5 6.2e-15 54.4 0.4 1.3 1 0 0 1 1 1 1 Cupin domain HTH_31 PF13560.1 gi|435852021|ref|YP_007313607.1| - 3.7e-11 43.0 0.3 5.3e-11 42.5 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|435852021|ref|YP_007313607.1| - 9.1e-11 41.4 0.2 1.2e-10 41.0 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|435852021|ref|YP_007313607.1| - 4e-09 36.3 0.0 8.5e-09 35.3 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain AraC_binding PF02311.14 gi|435852021|ref|YP_007313607.1| - 8e-06 25.5 0.2 1.5e-05 24.6 0.2 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_25 PF13413.1 gi|435852021|ref|YP_007313607.1| - 0.00015 21.2 1.1 0.00028 20.4 0.8 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Cupin_3 PF05899.7 gi|435852021|ref|YP_007313607.1| - 0.0015 17.8 0.0 0.0028 17.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HTH_26 PF13443.1 gi|435852021|ref|YP_007313607.1| - 0.0022 18.1 0.0 0.0035 17.5 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MannoseP_isomer PF01050.13 gi|435852021|ref|YP_007313607.1| - 0.014 14.9 0.2 0.025 14.1 0.1 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase HTH_37 PF13744.1 gi|435852021|ref|YP_007313607.1| - 0.074 12.8 0.4 0.12 12.1 0.3 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain 4HBT_2 PF13279.1 gi|435852022|ref|YP_007313608.1| - 1.3e-12 48.2 0.0 1.5e-12 47.9 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|435852022|ref|YP_007313608.1| - 2.2e-08 34.1 0.0 3.4e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|435852022|ref|YP_007313608.1| - 7.1e-06 25.1 0.0 0.021 13.7 0.0 2.1 1 1 1 2 2 2 2 Acyl-ACP thioesterase AMP-binding PF00501.23 gi|435852023|ref|YP_007313609.1| - 2.4e-105 352.3 0.0 2.9e-105 352.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|435852023|ref|YP_007313609.1| - 3.2e-15 56.8 0.0 6.9e-15 55.7 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF2341 PF10102.4 gi|435852024|ref|YP_007313610.1| - 1.1e-21 76.8 0.1 3.3e-21 75.2 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) Thioredoxin PF00085.15 gi|435852025|ref|YP_007313611.1| - 2.1e-22 78.7 0.1 2.4e-22 78.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|435852025|ref|YP_007313611.1| - 3.2e-08 33.7 0.3 9.3e-07 29.0 0.2 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|435852025|ref|YP_007313611.1| - 0.0001 22.0 0.1 0.00018 21.2 0.1 1.5 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.16 gi|435852025|ref|YP_007313611.1| - 0.0029 17.3 0.1 0.0041 16.7 0.1 1.3 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_6 PF13848.1 gi|435852025|ref|YP_007313611.1| - 0.0099 15.6 0.0 0.013 15.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|435852025|ref|YP_007313611.1| - 0.016 15.2 0.0 0.023 14.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_8 PF13905.1 gi|435852025|ref|YP_007313611.1| - 0.034 14.2 0.0 0.065 13.3 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like DUF2156 PF09924.4 gi|435852026|ref|YP_007313612.1| - 8e-92 307.2 0.0 1e-91 306.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2156) UPF0104 PF03706.8 gi|435852026|ref|YP_007313612.1| - 2.9e-08 33.3 32.2 2.9e-08 33.3 22.4 2.7 2 1 1 3 3 3 1 Uncharacterised protein family (UPF0104) Acetyltransf_6 PF13480.1 gi|435852026|ref|YP_007313612.1| - 0.051 13.5 0.0 0.14 12.0 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DEAD PF00270.24 gi|435852027|ref|YP_007313613.1| - 4.9e-26 91.2 0.0 8.3e-26 90.4 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase TPR_11 PF13414.1 gi|435852027|ref|YP_007313613.1| - 2.7e-18 65.3 0.1 6.6e-09 35.2 0.0 2.9 2 0 0 2 2 2 2 TPR repeat TPR_1 PF00515.23 gi|435852027|ref|YP_007313613.1| - 2.3e-17 61.7 5.4 1.6e-07 30.6 0.0 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat DUF1998 PF09369.5 gi|435852027|ref|YP_007313613.1| - 3.3e-17 62.8 0.1 9.2e-17 61.3 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) TPR_2 PF07719.12 gi|435852027|ref|YP_007313613.1| - 2.3e-15 55.1 0.4 5.6e-06 25.8 0.0 4.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|435852027|ref|YP_007313613.1| - 5.4e-12 45.3 0.1 1e-06 28.4 0.0 2.6 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435852027|ref|YP_007313613.1| - 1.7e-10 41.3 0.9 0.00015 22.3 0.0 3.1 2 1 1 3 3 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435852027|ref|YP_007313613.1| - 1.6e-09 37.5 0.2 0.0068 16.9 0.0 3.9 1 1 2 3 3 3 2 Tetratricopeptide repeat Helicase_C PF00271.26 gi|435852027|ref|YP_007313613.1| - 2.5e-09 36.8 0.3 1.3e-08 34.5 0.0 2.4 3 0 0 3 3 3 1 Helicase conserved C-terminal domain TPR_12 PF13424.1 gi|435852027|ref|YP_007313613.1| - 5.1e-09 35.9 0.0 0.00013 21.7 0.0 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435852027|ref|YP_007313613.1| - 6.6e-09 35.9 0.7 6e-06 26.5 0.1 2.7 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435852027|ref|YP_007313613.1| - 6.6e-09 34.9 1.2 0.018 14.8 0.0 4.3 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435852027|ref|YP_007313613.1| - 8.7e-07 28.6 1.0 0.0047 17.0 0.1 3.8 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435852027|ref|YP_007313613.1| - 2e-05 24.0 0.4 0.93 9.4 0.0 4.0 2 1 1 3 3 3 2 Tetratricopeptide repeat ResIII PF04851.10 gi|435852027|ref|YP_007313613.1| - 6.8e-05 22.7 0.0 0.00019 21.3 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit TPR_6 PF13174.1 gi|435852027|ref|YP_007313613.1| - 6.8e-05 23.0 0.3 3.2 8.4 0.0 3.9 3 0 0 3 3 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|435852027|ref|YP_007313613.1| - 7.7e-05 22.4 1.4 0.2 11.5 0.0 2.6 2 0 0 2 2 2 2 Fis1 C-terminal tetratricopeptide repeat Apc3 PF12895.2 gi|435852027|ref|YP_007313613.1| - 0.0043 17.1 0.0 0.25 11.5 0.1 3.0 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_15 PF13429.1 gi|435852027|ref|YP_007313613.1| - 0.079 11.9 0.0 0.19 10.7 0.0 1.7 1 1 0 1 1 1 0 Tetratricopeptide repeat Pirin PF02678.11 gi|435852028|ref|YP_007313614.1| - 1.4e-33 114.9 0.0 2.4e-33 114.1 0.0 1.4 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.8 gi|435852028|ref|YP_007313614.1| - 2.5e-25 88.5 0.0 1.7e-24 85.9 0.0 2.1 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Disaggr_assoc PF08480.5 gi|435852030|ref|YP_007313616.1| - 7e-43 146.3 17.4 7e-43 146.3 12.1 3.0 2 1 0 2 2 2 1 Disaggregatase related Beta_helix PF13229.1 gi|435852030|ref|YP_007313616.1| - 7.7e-11 41.9 49.1 1.1e-10 41.4 9.2 3.2 1 1 2 3 3 3 2 Right handed beta helix region DFP PF04127.10 gi|435852031|ref|YP_007313617.1| - 7.6e-50 169.1 0.3 1e-47 162.1 0.0 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|435852031|ref|YP_007313617.1| - 5.3e-29 100.5 1.7 1e-28 99.6 1.2 1.5 1 0 0 1 1 1 1 Flavoprotein Pyr_redox PF00070.22 gi|435852031|ref|YP_007313617.1| - 0.017 15.5 0.4 0.21 12.0 0.1 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|435852031|ref|YP_007313617.1| - 0.019 14.9 0.3 0.28 11.1 0.0 2.3 2 0 0 2 2 2 0 NADH(P)-binding Glyco_transf_4 PF13439.1 gi|435852031|ref|YP_007313617.1| - 0.21 11.2 0.6 1.2 8.7 0.1 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 GHMP_kinases_N PF00288.21 gi|435852032|ref|YP_007313618.1| - 3.4e-09 36.6 1.7 8e-09 35.4 1.2 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|435852032|ref|YP_007313618.1| - 0.017 15.3 0.0 0.017 15.3 0.0 1.9 2 0 0 2 2 2 0 GHMP kinases C terminal DUF137 PF02006.11 gi|435852033|ref|YP_007313619.1| - 8.4e-73 243.5 1.6 1e-72 243.2 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 DUF1722 PF08349.6 gi|435852033|ref|YP_007313619.1| - 0.028 14.2 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1722) HD PF01966.17 gi|435852034|ref|YP_007313620.1| - 1.4e-15 57.3 4.8 2.6e-15 56.5 3.3 1.4 1 0 0 1 1 1 1 HD domain DUF706 PF05153.10 gi|435852034|ref|YP_007313620.1| - 0.067 12.5 0.1 0.11 11.7 0.1 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF706) Amidohydro_1 PF01979.15 gi|435852035|ref|YP_007313621.1| - 1.1e-59 202.8 1.9 1.4e-59 202.4 1.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|435852035|ref|YP_007313621.1| - 8.5e-15 55.5 0.1 7.7e-13 49.0 0.0 2.7 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|435852035|ref|YP_007313621.1| - 3.1e-14 53.0 0.4 9.4e-12 44.8 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|435852035|ref|YP_007313621.1| - 5.6e-12 45.3 0.7 2.7e-11 43.1 0.3 2.5 3 1 0 3 3 3 1 Amidohydrolase A_deaminase PF00962.17 gi|435852035|ref|YP_007313621.1| - 0.00064 18.7 0.0 0.0014 17.6 0.0 1.5 1 0 0 1 1 1 1 Adenosine/AMP deaminase AdoHcyase PF05221.12 gi|435852036|ref|YP_007313622.1| - 5.7e-57 192.6 0.2 6.5e-57 192.5 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|435852036|ref|YP_007313622.1| - 2.5e-51 173.7 1.2 2.5e-51 173.7 0.8 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|435852036|ref|YP_007313622.1| - 6.3e-09 35.2 0.2 1.1e-08 34.5 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|435852036|ref|YP_007313622.1| - 1.3e-05 24.5 0.1 2.4e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|435852036|ref|YP_007313622.1| - 0.0044 16.5 0.1 0.011 15.2 0.1 1.8 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain RNA_pol_Rpb5_C PF01191.14 gi|435852037|ref|YP_007313623.1| - 2.7e-30 103.7 0.1 2.9e-30 103.6 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain CDC48_N PF02359.13 gi|435852037|ref|YP_007313623.1| - 0.07 13.0 0.0 0.079 12.9 0.0 1.1 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Toxin_64 PF15542.1 gi|435852037|ref|YP_007313623.1| - 0.096 13.2 0.1 0.11 13.1 0.0 1.1 1 0 0 1 1 1 0 Putative toxin 64 Trp_repressor PF01371.14 gi|435852037|ref|YP_007313623.1| - 0.1 12.5 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein Nha1_C PF08619.5 gi|435852037|ref|YP_007313623.1| - 0.15 11.3 0.1 0.16 11.1 0.1 1.0 1 0 0 1 1 1 0 Alkali metal cation/H+ antiporter Nha1 C terminus RNA_pol_Rpb2_1 PF04563.10 gi|435852038|ref|YP_007313624.1| - 3.4e-59 199.1 0.1 4.3e-59 198.8 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|435852038|ref|YP_007313624.1| - 1.2e-27 96.5 0.0 1.9e-27 95.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|435852038|ref|YP_007313624.1| - 5e-25 87.0 0.0 8.6e-25 86.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.23 gi|435852039|ref|YP_007313625.1| - 6.9e-124 413.5 0.0 9.5e-124 413.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|435852039|ref|YP_007313625.1| - 1.5e-28 98.9 0.1 4.1e-28 97.4 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|435852039|ref|YP_007313625.1| - 2.4e-21 75.3 2.0 4.8e-21 74.3 1.4 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|435852039|ref|YP_007313625.1| - 4.7e-16 58.4 0.6 9.7e-16 57.4 0.4 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 zf-NADH-PPase PF09297.6 gi|435852039|ref|YP_007313625.1| - 0.028 13.9 1.2 0.12 11.8 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|435852039|ref|YP_007313625.1| - 0.069 12.3 1.3 0.18 11.0 0.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|435852039|ref|YP_007313625.1| - 0.083 12.6 0.4 17 5.2 0.0 2.7 2 0 0 2 2 2 0 Nudix N-terminal DUF1451 PF07295.6 gi|435852039|ref|YP_007313625.1| - 0.16 11.7 0.4 0.31 10.8 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) RNA_pol_Rpb1_1 PF04997.7 gi|435852040|ref|YP_007313626.1| - 9.7e-91 304.5 0.0 4.7e-88 295.6 0.0 2.3 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|435852040|ref|YP_007313626.1| - 7.4e-66 221.1 0.2 1.2e-65 220.4 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|435852040|ref|YP_007313626.1| - 1.8e-33 114.5 0.0 5.8e-33 112.8 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.13 gi|435852040|ref|YP_007313626.1| - 3.9e-31 107.9 0.0 7.5e-31 106.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|435852040|ref|YP_007313626.1| - 4.3e-31 108.1 0.1 9.6e-31 107.0 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-ribbon_3 PF13248.1 gi|435852040|ref|YP_007313626.1| - 0.013 14.7 0.7 0.18 11.0 0.6 2.5 1 1 1 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.12 gi|435852041|ref|YP_007313627.1| - 1.2e-52 178.8 2.1 1.7e-52 178.4 1.5 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 NAC PF01849.13 gi|435852041|ref|YP_007313627.1| - 0.02 14.3 0.2 0.069 12.6 0.1 1.9 1 0 0 1 1 1 0 NAC domain Ribosomal_L7Ae PF01248.21 gi|435852042|ref|YP_007313628.1| - 4.9e-14 51.5 0.3 6.4e-14 51.2 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|435852043|ref|YP_007313629.1| - 5.4e-21 73.9 6.6 1.5e-17 62.9 0.2 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|435852043|ref|YP_007313629.1| - 1.8e-14 53.2 2.7 5e-14 51.8 0.5 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|435852043|ref|YP_007313629.1| - 6.4e-06 25.7 1.2 0.0078 15.8 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|435852043|ref|YP_007313629.1| - 0.00023 20.7 2.0 0.049 13.2 0.1 2.6 3 0 0 3 3 3 2 KH domain KH_3 PF13014.1 gi|435852043|ref|YP_007313629.1| - 1.2 8.8 5.8 1.3 8.7 0.3 2.7 2 0 0 2 2 2 0 KH domain Ribosom_S12_S23 PF00164.20 gi|435852044|ref|YP_007313630.1| - 4.3e-38 129.4 0.1 5.1e-38 129.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|435852045|ref|YP_007313631.1| - 3.9e-38 130.3 4.7 4.5e-38 130.1 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.22 gi|435852046|ref|YP_007313632.1| - 1.5e-59 200.5 0.2 2.8e-59 199.7 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|435852046|ref|YP_007313632.1| - 2.3e-31 107.8 0.0 6.1e-31 106.4 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|435852046|ref|YP_007313632.1| - 1.3e-24 85.8 2.1 2.6e-24 84.8 0.6 2.1 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|435852046|ref|YP_007313632.1| - 3.6e-23 81.2 0.0 1.2e-22 79.5 0.0 2.0 1 1 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|435852046|ref|YP_007313632.1| - 4.3e-16 58.7 0.2 2.8e-15 56.1 0.4 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|435852046|ref|YP_007313632.1| - 3.7e-05 23.6 0.0 8.4e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF4473 PF14747.1 gi|435852046|ref|YP_007313632.1| - 0.019 15.1 0.2 0.074 13.2 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) AAA_10 PF12846.2 gi|435852046|ref|YP_007313632.1| - 0.02 14.3 0.0 0.047 13.1 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain Ras PF00071.17 gi|435852046|ref|YP_007313632.1| - 0.035 13.4 0.0 0.066 12.6 0.0 1.3 1 0 0 1 1 1 0 Ras family Paramyxo_PCT PF14320.1 gi|435852046|ref|YP_007313632.1| - 0.058 12.2 0.0 0.13 11.1 0.0 1.5 2 0 0 2 2 2 0 Phosphoprotein P region PCT disordered GTP_EFTU PF00009.22 gi|435852047|ref|YP_007313633.1| - 5.6e-59 198.7 0.0 6.9e-59 198.4 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|435852047|ref|YP_007313633.1| - 2.9e-31 107.5 1.1 7e-31 106.3 0.1 2.2 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|435852047|ref|YP_007313633.1| - 2.8e-17 62.5 2.2 8e-17 61.1 1.5 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|435852047|ref|YP_007313633.1| - 3.5e-07 30.1 0.0 8.9e-07 28.8 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|435852047|ref|YP_007313633.1| - 7.6e-07 29.6 0.0 0.00021 21.7 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|435852047|ref|YP_007313633.1| - 4.9e-06 26.0 1.3 7.2e-06 25.5 0.4 1.7 2 0 0 2 2 1 1 Elongation factor Tu domain 4 Ras PF00071.17 gi|435852047|ref|YP_007313633.1| - 0.001 18.4 0.0 0.0076 15.6 0.0 2.1 2 0 0 2 2 2 1 Ras family Gtr1_RagA PF04670.7 gi|435852047|ref|YP_007313633.1| - 0.0012 18.0 0.0 0.078 12.0 0.0 2.1 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region FeoB_N PF02421.13 gi|435852047|ref|YP_007313633.1| - 0.0016 17.7 0.1 0.056 12.7 0.0 2.7 2 1 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|435852047|ref|YP_007313633.1| - 0.0026 17.6 0.0 2 8.2 0.0 2.5 1 1 1 2 2 2 2 Dynamin family Septin PF00735.13 gi|435852047|ref|YP_007313633.1| - 0.069 12.1 0.0 0.14 11.0 0.0 1.5 1 1 0 1 1 1 0 Septin Ribosomal_S10 PF00338.17 gi|435852048|ref|YP_007313634.1| - 3.2e-29 100.6 0.0 3.5e-29 100.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e DEAD PF00270.24 gi|435852049|ref|YP_007313635.1| - 5.6e-47 159.3 0.0 1.7e-45 154.5 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|435852049|ref|YP_007313635.1| - 4.6e-29 100.1 0.1 8.9e-29 99.1 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF1253 PF06862.7 gi|435852049|ref|YP_007313635.1| - 4.5e-06 25.3 0.0 0.0004 18.9 0.0 2.8 2 1 1 3 3 3 1 Protein of unknown function (DUF1253) ResIII PF04851.10 gi|435852049|ref|YP_007313635.1| - 7.8e-06 25.8 0.0 2.5e-05 24.2 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|435852049|ref|YP_007313635.1| - 5.3e-05 22.8 0.0 0.00088 18.9 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|435852049|ref|YP_007313635.1| - 0.0081 15.7 0.9 0.039 13.5 0.0 2.2 2 1 0 2 2 2 1 AAA domain DsrH PF04077.7 gi|435852049|ref|YP_007313635.1| - 0.04 13.5 0.2 0.091 12.4 0.2 1.6 1 0 0 1 1 1 0 DsrH like protein AAA_19 PF13245.1 gi|435852049|ref|YP_007313635.1| - 0.043 13.5 1.0 0.28 10.9 0.1 2.8 2 1 0 3 3 3 0 Part of AAA domain Abhydrolase_5 PF12695.2 gi|435852050|ref|YP_007313636.1| - 1.4e-22 80.0 0.0 1.8e-22 79.6 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|435852050|ref|YP_007313636.1| - 5e-12 46.1 0.0 1.2e-10 41.6 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|435852050|ref|YP_007313636.1| - 3.2e-11 42.2 0.4 4.2e-10 38.6 0.0 2.5 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) DLH PF01738.13 gi|435852050|ref|YP_007313636.1| - 3.3e-09 36.3 0.1 7.7e-09 35.1 0.1 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|435852050|ref|YP_007313636.1| - 6.1e-07 28.8 0.1 4.9e-06 25.9 0.1 2.1 1 1 0 1 1 1 1 Prolyl oligopeptidase family BAAT_C PF08840.6 gi|435852050|ref|YP_007313636.1| - 2e-06 27.6 0.0 3.3e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_1 PF00561.15 gi|435852050|ref|YP_007313636.1| - 0.00015 21.4 0.0 0.011 15.3 0.0 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|435852050|ref|YP_007313636.1| - 0.0064 16.0 0.0 0.0087 15.6 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF308 PF03729.8 gi|435852050|ref|YP_007313636.1| - 0.017 15.0 0.2 0.033 14.1 0.1 1.4 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) PhoPQ_related PF10142.4 gi|435852050|ref|YP_007313636.1| - 0.043 12.3 0.5 4 5.8 0.1 2.1 1 1 1 2 2 2 0 PhoPQ-activated pathogenicity-related protein DUF2974 PF11187.3 gi|435852050|ref|YP_007313636.1| - 0.078 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Hydrolase_4 PF12146.3 gi|435852050|ref|YP_007313636.1| - 0.1 12.4 0.0 0.28 11.0 0.0 1.8 1 0 0 1 1 1 0 Putative lysophospholipase Esterase PF00756.15 gi|435852050|ref|YP_007313636.1| - 0.16 11.3 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Putative esterase HAD_2 PF13419.1 gi|435852051|ref|YP_007313637.1| - 1.2e-27 97.2 0.1 1.5e-27 96.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|435852051|ref|YP_007313637.1| - 1.1e-15 58.6 0.0 6.4e-14 52.8 0.0 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|435852051|ref|YP_007313637.1| - 1.2e-09 37.7 0.0 2.3e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|435852051|ref|YP_007313637.1| - 1.9e-05 24.9 0.5 2.6e-05 24.4 0.0 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|435852051|ref|YP_007313637.1| - 0.015 15.1 0.1 0.061 13.2 0.0 1.9 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.9 gi|435852051|ref|YP_007313637.1| - 0.019 14.3 0.0 0.56 9.5 0.0 2.2 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) NT5C PF06941.7 gi|435852051|ref|YP_007313637.1| - 0.045 13.2 0.3 0.37 10.2 0.2 2.1 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) NIF PF03031.13 gi|435852051|ref|YP_007313637.1| - 0.094 12.3 0.0 1.2 8.8 0.0 2.4 1 1 1 2 2 2 0 NLI interacting factor-like phosphatase FAD_binding_3 PF01494.14 gi|435852052|ref|YP_007313638.1| - 3.8e-18 65.6 2.6 1e-06 28.1 0.0 3.0 3 0 0 3 3 3 3 FAD binding domain FAD_oxidored PF12831.2 gi|435852052|ref|YP_007313638.1| - 9.3e-15 54.6 0.4 1.3e-14 54.1 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|435852052|ref|YP_007313638.1| - 3e-13 49.4 0.7 2e-07 30.2 0.3 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|435852052|ref|YP_007313638.1| - 7.1e-11 42.3 1.6 1.9e-10 40.9 1.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|435852052|ref|YP_007313638.1| - 9.7e-10 37.8 0.7 8.7e-09 34.7 0.5 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.12 gi|435852052|ref|YP_007313638.1| - 1e-07 31.3 0.4 2e-07 30.3 0.1 1.6 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.9 gi|435852052|ref|YP_007313638.1| - 5.7e-07 28.5 3.3 0.005 15.5 1.0 2.7 1 1 1 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.9 gi|435852052|ref|YP_007313638.1| - 5.8e-07 28.3 1.8 3.6e-06 25.6 0.3 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|435852052|ref|YP_007313638.1| - 4.4e-06 26.9 0.3 0.00086 19.4 0.5 2.8 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|435852052|ref|YP_007313638.1| - 3.5e-05 22.8 0.5 3.5e-05 22.8 0.3 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|435852052|ref|YP_007313638.1| - 4.7e-05 23.3 0.3 4.7e-05 23.3 0.2 2.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|435852052|ref|YP_007313638.1| - 0.00012 21.1 6.1 0.00074 18.4 1.3 2.3 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|435852052|ref|YP_007313638.1| - 0.00093 19.5 1.3 0.0099 16.2 0.5 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|435852052|ref|YP_007313638.1| - 0.0026 17.9 0.2 0.0049 17.0 0.1 1.6 1 1 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|435852052|ref|YP_007313638.1| - 0.013 15.5 0.5 0.041 13.8 0.1 1.9 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.13 gi|435852052|ref|YP_007313638.1| - 0.071 12.7 0.3 0.14 11.7 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain L_biotic_typeA PF04604.8 gi|435852052|ref|YP_007313638.1| - 0.079 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Type-A lantibiotic GMC_oxred_N PF00732.14 gi|435852052|ref|YP_007313638.1| - 0.088 11.9 0.2 0.33 10.0 0.0 1.9 2 0 0 2 2 2 0 GMC oxidoreductase OppC_N PF12911.2 gi|435852053|ref|YP_007313639.1| - 0.21 11.0 2.4 0.22 10.9 1.6 1.1 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C ATP-synt_8 PF00895.15 gi|435852053|ref|YP_007313639.1| - 0.26 11.5 2.7 0.26 11.5 1.9 1.2 1 0 0 1 1 1 0 ATP synthase protein 8 RELT PF12606.3 gi|435852053|ref|YP_007313639.1| - 0.54 9.4 3.2 0.59 9.3 2.2 1.1 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 PsbH PF00737.15 gi|435852053|ref|YP_007313639.1| - 8.2 6.0 8.7 29 4.3 5.5 1.9 1 1 1 2 2 2 0 Photosystem II 10 kDa phosphoprotein ACT PF01842.20 gi|435852054|ref|YP_007313640.1| - 0.0001 21.7 0.5 0.00039 19.8 0.3 2.0 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|435852054|ref|YP_007313640.1| - 0.032 14.5 0.1 0.076 13.3 0.0 1.6 1 0 0 1 1 1 0 ACT domain CM_2 PF01817.16 gi|435852054|ref|YP_007313640.1| - 0.054 13.5 0.0 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 Chorismate mutase type II HTH_Crp_2 PF13545.1 gi|435852054|ref|YP_007313640.1| - 0.063 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HMGL-like PF00682.14 gi|435852055|ref|YP_007313641.1| - 1.1e-34 120.1 0.0 1.6e-34 119.6 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Iso_dh PF00180.15 gi|435852056|ref|YP_007313642.1| - 2.2e-84 283.3 0.0 2.7e-84 283.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase TatD_DNase PF01026.16 gi|435852057|ref|YP_007313643.1| - 2.5e-23 82.5 0.0 3.1e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase DUF4147 PF13660.1 gi|435852058|ref|YP_007313644.1| - 8.5e-84 280.3 0.0 1.2e-83 279.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|435852058|ref|YP_007313644.1| - 2.8e-36 123.8 2.1 6.1e-36 122.7 1.5 1.6 1 0 0 1 1 1 1 MOFRL family Peptidase_C13 PF01650.13 gi|435852058|ref|YP_007313644.1| - 0.097 11.9 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase C13 family HxlR PF01638.12 gi|435852059|ref|YP_007313645.1| - 2.8e-23 81.3 0.1 3.4e-23 81.0 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF2513 PF10711.4 gi|435852059|ref|YP_007313645.1| - 4.5e-08 33.1 0.0 6.1e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_24 PF13412.1 gi|435852059|ref|YP_007313645.1| - 3.4e-05 23.1 0.1 4.7e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|435852059|ref|YP_007313645.1| - 0.0001 22.0 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|435852059|ref|YP_007313645.1| - 0.0019 17.8 0.0 0.0034 17.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family YjcQ PF09639.5 gi|435852059|ref|YP_007313645.1| - 0.0045 17.0 0.0 0.0065 16.5 0.0 1.3 1 0 0 1 1 1 1 YjcQ protein DUF4423 PF14394.1 gi|435852059|ref|YP_007313645.1| - 0.0048 16.4 0.0 0.0061 16.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) DUF505 PF04458.7 gi|435852059|ref|YP_007313645.1| - 0.0095 14.1 0.1 0.01 14.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_5 PF01022.15 gi|435852059|ref|YP_007313645.1| - 0.012 15.2 0.0 0.026 14.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|435852059|ref|YP_007313645.1| - 0.016 14.8 0.0 0.029 14.0 0.0 1.4 1 1 0 1 1 1 0 MarR family HTH_12 PF08461.5 gi|435852059|ref|YP_007313645.1| - 0.018 14.7 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain MarR PF01047.17 gi|435852059|ref|YP_007313645.1| - 0.027 14.1 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|435852059|ref|YP_007313645.1| - 0.034 14.1 0.0 0.046 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain RPA_C PF08784.6 gi|435852059|ref|YP_007313645.1| - 0.036 14.4 0.1 0.075 13.4 0.0 1.6 2 0 0 2 2 2 0 Replication protein A C terminal HTH_27 PF13463.1 gi|435852059|ref|YP_007313645.1| - 0.074 13.3 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF438 PF04282.8 gi|435852059|ref|YP_007313645.1| - 0.15 11.8 0.2 0.15 11.8 0.2 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF438) Cupin_2 PF07883.6 gi|435852060|ref|YP_007313646.1| - 2.1e-08 33.5 0.0 2.8e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|435852060|ref|YP_007313646.1| - 3.6e-07 29.9 0.0 4.6e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.7 gi|435852060|ref|YP_007313646.1| - 0.0026 17.3 0.0 0.0059 16.1 0.0 1.6 1 1 0 1 1 1 1 Ethanolamine utilisation protein EutQ Ectoine_synth PF06339.7 gi|435852060|ref|YP_007313646.1| - 0.008 16.1 0.0 0.014 15.3 0.0 1.3 1 1 0 1 1 1 1 Ectoine synthase AraC_binding_2 PF14525.1 gi|435852060|ref|YP_007313646.1| - 0.01 15.3 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain MannoseP_isomer PF01050.13 gi|435852060|ref|YP_007313646.1| - 0.016 14.7 0.0 0.018 14.6 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase ARD PF03079.9 gi|435852060|ref|YP_007313646.1| - 0.017 15.1 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family Cupin_3 PF05899.7 gi|435852060|ref|YP_007313646.1| - 0.027 13.8 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|435852060|ref|YP_007313646.1| - 0.049 13.2 0.0 0.056 13.0 0.0 1.1 1 0 0 1 1 1 0 Cupin 3-HAO PF06052.7 gi|435852060|ref|YP_007313646.1| - 0.051 12.9 0.0 0.056 12.8 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase Pirin_C PF05726.8 gi|435852060|ref|YP_007313646.1| - 0.083 12.9 0.1 0.21 11.7 0.0 1.6 1 1 1 2 2 2 0 Pirin C-terminal cupin domain CENP-C_C PF11699.3 gi|435852060|ref|YP_007313646.1| - 0.11 12.4 0.0 0.21 11.6 0.0 1.4 1 1 0 1 1 1 0 Mif2/CENP-C like CGGC PF08821.6 gi|435852061|ref|YP_007313647.1| - 2.7e-35 120.6 1.3 3e-35 120.5 0.9 1.0 1 0 0 1 1 1 1 CGGC domain KH_5 PF13184.1 gi|435852061|ref|YP_007313647.1| - 0.14 11.9 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 NusA-like KH domain Fer4_21 PF14697.1 gi|435852062|ref|YP_007313648.1| - 2.3e-09 36.9 6.7 2.3e-09 36.9 4.6 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435852062|ref|YP_007313648.1| - 6.3e-09 36.0 32.0 2.8e-06 27.6 5.6 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435852062|ref|YP_007313648.1| - 4.6e-08 33.6 12.7 5.4e-05 23.8 2.5 2.3 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|435852062|ref|YP_007313648.1| - 2.8e-07 29.8 12.1 3.2e-05 23.3 3.2 3.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435852062|ref|YP_007313648.1| - 3.7e-07 29.7 20.6 6.4e-07 28.9 2.3 4.0 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435852062|ref|YP_007313648.1| - 3.9e-06 27.0 7.5 3.9e-06 27.0 5.2 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435852062|ref|YP_007313648.1| - 5.1e-06 26.1 7.5 5.1e-06 26.1 5.2 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852062|ref|YP_007313648.1| - 0.00021 21.7 7.9 0.0029 18.1 5.3 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|435852062|ref|YP_007313648.1| - 0.0014 18.4 3.7 0.0014 18.4 2.6 3.8 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|435852062|ref|YP_007313648.1| - 0.011 16.1 11.1 0.59 10.5 0.5 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435852062|ref|YP_007313648.1| - 0.097 13.0 3.6 0.097 13.0 2.5 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435852062|ref|YP_007313648.1| - 0.16 11.9 15.6 26 4.9 10.8 2.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|435852062|ref|YP_007313648.1| - 0.43 10.4 8.5 2 8.3 5.9 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435852062|ref|YP_007313648.1| - 5.8 7.3 7.8 5.1 7.5 2.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain GXGXG PF01493.14 gi|435852063|ref|YP_007313649.1| - 3.8e-25 88.0 19.9 3.8e-19 68.4 9.1 2.9 1 1 1 2 2 2 2 GXGXG motif DUF342 PF03961.8 gi|435852063|ref|YP_007313649.1| - 5.3 5.3 10.5 0.99 7.7 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF342) PMSR PF01625.16 gi|435852064|ref|YP_007313650.1| - 6.8e-66 220.9 0.5 7.4e-66 220.8 0.3 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase PK PF00224.16 gi|435852065|ref|YP_007313651.1| - 7.8e-123 409.5 1.6 1e-122 409.1 1.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|435852065|ref|YP_007313651.1| - 1.6e-20 72.7 0.0 1.2e-19 70.0 0.0 2.3 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|435852065|ref|YP_007313651.1| - 5.4e-06 25.4 1.9 1.8e-05 23.7 1.2 1.9 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family PIG-H PF10181.4 gi|435852065|ref|YP_007313651.1| - 0.094 12.3 0.7 0.72 9.5 0.0 2.7 4 0 0 4 4 4 0 GPI-GlcNAc transferase complex, PIG-H component Tocopherol_cycl PF14249.1 gi|435852065|ref|YP_007313651.1| - 0.14 10.7 0.1 0.34 9.5 0.0 1.4 1 1 0 1 1 1 0 Tocopherol cyclase FAD_binding_4 PF01565.18 gi|435852066|ref|YP_007313652.1| - 6.3e-36 122.9 0.1 1.5e-35 121.6 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain CCG PF02754.11 gi|435852066|ref|YP_007313652.1| - 5.5e-34 116.0 4.3 5e-16 58.4 0.3 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.1 gi|435852066|ref|YP_007313652.1| - 1.1e-09 38.4 5.8 4.6e-09 36.5 4.0 2.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435852066|ref|YP_007313652.1| - 2.3e-05 24.3 6.1 2.3e-05 24.3 4.2 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain FAD-oxidase_C PF02913.14 gi|435852066|ref|YP_007313652.1| - 0.00084 18.7 0.0 0.0055 16.0 0.0 2.3 1 1 0 1 1 1 1 FAD linked oxidases, C-terminal domain Fer4_7 PF12838.2 gi|435852066|ref|YP_007313652.1| - 0.0025 18.1 5.5 0.0076 16.6 3.8 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435852066|ref|YP_007313652.1| - 0.016 15.4 6.4 0.016 15.4 4.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435852066|ref|YP_007313652.1| - 0.036 13.8 11.5 0.015 15.0 5.1 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain DUF1328 PF07043.8 gi|435852067|ref|YP_007313653.1| - 2.9e-13 49.5 12.9 3.8e-13 49.1 9.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF420 PF04238.7 gi|435852067|ref|YP_007313653.1| - 0.16 11.9 4.7 0.17 11.7 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF420) ABC2_membrane_2 PF12679.2 gi|435852067|ref|YP_007313653.1| - 1.3 7.8 11.1 1.3 7.7 7.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4271 PF14093.1 gi|435852067|ref|YP_007313653.1| - 1.5 8.4 7.4 1.5 8.4 5.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) SecG PF03840.9 gi|435852067|ref|YP_007313653.1| - 2.4 7.9 9.7 0.43 10.3 1.1 2.0 1 1 1 2 2 2 0 Preprotein translocase SecG subunit DUF202 PF02656.10 gi|435852067|ref|YP_007313653.1| - 5.1 7.3 10.4 28 4.9 7.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) COX2-transmemb PF09125.5 gi|435852067|ref|YP_007313653.1| - 6.1 6.4 10.6 0.29 10.6 1.0 2.1 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane BTP PF05232.7 gi|435852067|ref|YP_007313653.1| - 7.4 6.4 8.0 9 6.1 5.5 1.1 1 0 0 1 1 1 0 Bacterial Transmembrane Pair family NfeD PF01957.13 gi|435852067|ref|YP_007313653.1| - 8.1 6.5 9.9 8.1 6.5 6.9 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Cation_ATPase_C PF00689.16 gi|435852067|ref|YP_007313653.1| - 9.2 5.7 8.4 9.4 5.7 5.8 1.0 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus ABC_tran PF00005.22 gi|435852068|ref|YP_007313654.1| - 6e-20 71.9 0.3 7.6e-09 35.9 0.0 4.4 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|435852068|ref|YP_007313654.1| - 1.3e-12 47.4 0.6 0.0097 15.1 0.0 4.2 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|435852068|ref|YP_007313654.1| - 1.6e-08 34.9 7.3 6.2e-05 23.0 0.0 4.3 4 0 0 4 4 4 2 AAA domain AAA_16 PF13191.1 gi|435852068|ref|YP_007313654.1| - 4.7e-07 29.9 0.0 0.002 18.1 0.0 2.8 3 0 0 3 3 2 2 AAA ATPase domain DnaJ_CXXCXGXG PF00684.14 gi|435852068|ref|YP_007313654.1| - 2.1e-06 27.6 5.4 0.027 14.5 0.1 3.5 3 0 0 3 3 3 2 DnaJ central domain AAA_29 PF13555.1 gi|435852068|ref|YP_007313654.1| - 2.2e-06 27.1 0.1 0.054 13.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|435852068|ref|YP_007313654.1| - 2.6e-06 28.2 5.6 0.26 12.1 0.0 4.4 4 0 0 4 4 3 2 AAA domain DUF258 PF03193.11 gi|435852068|ref|YP_007313654.1| - 3.7e-06 26.2 0.1 0.039 13.1 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|435852068|ref|YP_007313654.1| - 1.4e-05 24.9 0.2 0.75 9.6 0.0 4.0 3 1 1 4 4 4 2 AAA domain AAA_23 PF13476.1 gi|435852068|ref|YP_007313654.1| - 2.4e-05 24.7 0.5 0.045 14.0 0.1 2.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|435852068|ref|YP_007313654.1| - 4e-05 23.7 0.8 0.55 10.3 0.0 3.8 4 0 0 4 4 3 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|435852068|ref|YP_007313654.1| - 4.1e-05 23.1 1.4 0.063 12.9 0.1 2.5 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter AAA_25 PF13481.1 gi|435852068|ref|YP_007313654.1| - 4.3e-05 23.0 0.0 0.043 13.2 0.0 3.4 4 0 0 4 4 3 1 AAA domain AAA_18 PF13238.1 gi|435852068|ref|YP_007313654.1| - 6e-05 23.3 0.4 0.67 10.2 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_33 PF13671.1 gi|435852068|ref|YP_007313654.1| - 6.9e-05 22.7 0.0 1.2 9.0 0.0 3.6 4 0 0 4 4 3 2 AAA domain Arch_ATPase PF01637.13 gi|435852068|ref|YP_007313654.1| - 0.00018 21.2 0.8 0.68 9.5 0.0 3.3 3 1 0 3 3 3 2 Archaeal ATPase APS_kinase PF01583.15 gi|435852068|ref|YP_007313654.1| - 0.00022 20.9 0.3 1 8.9 0.0 3.1 3 0 0 3 3 2 2 Adenylylsulphate kinase Viral_helicase1 PF01443.13 gi|435852068|ref|YP_007313654.1| - 0.00049 19.6 0.1 0.02 14.3 0.0 2.7 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase MobB PF03205.9 gi|435852068|ref|YP_007313654.1| - 0.00054 19.6 0.3 0.061 13.0 0.1 3.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|435852068|ref|YP_007313654.1| - 0.00075 19.4 0.6 0.16 11.9 0.0 3.4 4 0 0 4 4 2 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|435852068|ref|YP_007313654.1| - 0.0014 18.1 0.1 0.59 9.5 0.0 2.5 2 0 0 2 2 2 1 AAA-like domain DUF2075 PF09848.4 gi|435852068|ref|YP_007313654.1| - 0.0041 16.1 0.0 1.7 7.5 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_15 PF13175.1 gi|435852068|ref|YP_007313654.1| - 0.0047 16.0 5.7 0.036 13.1 0.0 3.8 5 0 0 5 5 5 1 AAA ATPase domain PRK PF00485.13 gi|435852068|ref|YP_007313654.1| - 0.0062 16.1 0.1 1.4 8.4 0.0 2.7 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family cobW PF02492.14 gi|435852068|ref|YP_007313654.1| - 0.0075 15.7 0.2 0.52 9.7 0.0 2.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|435852068|ref|YP_007313654.1| - 0.0087 15.1 0.0 5 6.1 0.0 2.6 2 0 0 2 2 2 0 Zeta toxin AAA_19 PF13245.1 gi|435852068|ref|YP_007313654.1| - 0.0094 15.6 0.0 7.3 6.4 0.0 2.9 2 0 0 2 2 2 0 Part of AAA domain T2SE PF00437.15 gi|435852068|ref|YP_007313654.1| - 0.01 14.7 0.1 3.8 6.3 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Miro PF08477.8 gi|435852068|ref|YP_007313654.1| - 0.012 16.0 0.2 4.1 7.9 0.0 3.0 3 0 0 3 3 2 0 Miro-like protein YwpF PF14183.1 gi|435852068|ref|YP_007313654.1| - 0.015 15.0 0.0 0.043 13.5 0.0 1.7 1 0 0 1 1 1 0 YwpF-like protein NACHT PF05729.7 gi|435852068|ref|YP_007313654.1| - 0.023 14.3 0.0 3.1 7.4 0.0 2.5 2 0 0 2 2 2 0 NACHT domain IIGP PF05049.8 gi|435852068|ref|YP_007313654.1| - 0.037 12.8 0.3 0.56 8.9 0.0 2.6 3 0 0 3 3 3 0 Interferon-inducible GTPase (IIGP) LuxS PF02664.10 gi|435852068|ref|YP_007313654.1| - 0.06 12.9 0.1 13 5.2 0.0 3.8 5 0 0 5 5 4 0 S-Ribosylhomocysteinase (LuxS) RNA12 PF10443.4 gi|435852068|ref|YP_007313654.1| - 0.068 11.6 0.0 7.2 4.9 0.0 2.2 2 0 0 2 2 2 0 RNA12 protein RNA_helicase PF00910.17 gi|435852068|ref|YP_007313654.1| - 0.07 13.3 0.0 5.2 7.2 0.0 2.6 2 0 0 2 2 2 0 RNA helicase TF_Zn_Ribbon PF08271.7 gi|435852068|ref|YP_007313654.1| - 0.078 12.3 7.7 1.9 7.8 0.1 3.9 4 0 0 4 4 3 0 TFIIB zinc-binding HypA PF01155.14 gi|435852068|ref|YP_007313654.1| - 0.43 10.2 2.4 1.1 8.9 0.0 2.7 3 0 0 3 3 2 0 Hydrogenase expression/synthesis hypA family zf-RING_3 PF14369.1 gi|435852068|ref|YP_007313654.1| - 1.3 9.0 6.1 4.7 7.3 0.0 3.2 3 0 0 3 3 3 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|435852068|ref|YP_007313654.1| - 1.5 8.8 14.8 0.14 12.1 1.1 4.1 4 0 0 4 4 4 0 Zinc ribbon domain UPF0547 PF10571.4 gi|435852068|ref|YP_007313654.1| - 2 8.1 10.2 2.2 8.0 0.1 3.1 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|435852068|ref|YP_007313654.1| - 2.1 7.6 7.4 5.1 6.4 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|435852068|ref|YP_007313654.1| - 2.6 7.9 7.2 1.2 8.9 0.2 2.9 3 0 0 3 3 2 0 Double zinc ribbon DUF35_N PF12172.3 gi|435852068|ref|YP_007313654.1| - 6.7 6.7 9.7 37 4.3 0.1 4.2 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Lyase_1 PF00206.15 gi|435852069|ref|YP_007313655.1| - 2.7e-53 181.2 1.1 2.7e-53 181.2 0.8 1.5 2 0 0 2 2 2 1 Lyase ADSL_C PF10397.4 gi|435852069|ref|YP_007313655.1| - 7.3e-28 96.3 0.1 1.6e-27 95.2 0.1 1.6 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C2 PF14698.1 gi|435852069|ref|YP_007313655.1| - 0.0029 17.6 0.2 0.15 12.1 0.0 3.1 3 0 0 3 3 3 1 Argininosuccinate lyase C-terminal FumaraseC_C PF10415.4 gi|435852069|ref|YP_007313655.1| - 0.027 14.5 0.0 0.11 12.6 0.0 2.1 1 0 0 1 1 1 0 Fumarase C C-terminus TPR_1 PF00515.23 gi|435852070|ref|YP_007313656.1| - 1.9e-140 451.3 44.4 7.5e-10 37.9 0.1 24.7 25 0 0 25 25 25 22 Tetratricopeptide repeat TPR_11 PF13414.1 gi|435852070|ref|YP_007313656.1| - 1e-136 444.7 55.7 3.3e-16 58.6 0.1 15.5 4 4 12 19 19 19 19 TPR repeat TPR_2 PF07719.12 gi|435852070|ref|YP_007313656.1| - 7.2e-135 428.3 31.0 1.6e-07 30.6 0.0 24.3 24 0 0 24 24 24 22 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435852070|ref|YP_007313656.1| - 6.5e-101 329.3 18.1 2.5e-10 40.7 4.3 14.0 8 3 9 17 17 17 15 Tetratricopeptide repeat TPR_17 PF13431.1 gi|435852070|ref|YP_007313656.1| - 4.8e-81 260.3 44.8 5.2e-05 23.1 0.0 23.5 24 0 0 24 24 23 18 Tetratricopeptide repeat TPR_8 PF13181.1 gi|435852070|ref|YP_007313656.1| - 2.5e-77 249.0 61.0 1.1e-05 24.8 0.1 24.1 22 3 3 25 25 25 18 Tetratricopeptide repeat TPR_12 PF13424.1 gi|435852070|ref|YP_007313656.1| - 8.7e-71 233.8 44.6 1.7e-08 34.3 0.3 15.0 7 3 11 18 18 18 16 Tetratricopeptide repeat TPR_14 PF13428.1 gi|435852070|ref|YP_007313656.1| - 1e-70 227.6 12.8 3.7e-05 23.9 0.0 22.2 5 5 18 23 23 23 15 Tetratricopeptide repeat TPR_19 PF14559.1 gi|435852070|ref|YP_007313656.1| - 1.1e-61 205.0 28.8 1e-06 28.9 0.1 14.1 9 3 3 13 13 13 11 Tetratricopeptide repeat TPR_9 PF13371.1 gi|435852070|ref|YP_007313656.1| - 1.4e-56 188.2 6.6 1.3e-05 24.9 0.0 14.3 5 5 13 18 18 18 13 Tetratricopeptide repeat TPR_6 PF13174.1 gi|435852070|ref|YP_007313656.1| - 7.7e-52 170.2 39.2 0.00023 21.4 0.0 22.4 23 0 0 23 23 22 10 Tetratricopeptide repeat Apc3 PF12895.2 gi|435852070|ref|YP_007313656.1| - 2.4e-45 152.5 33.5 7.4e-07 29.2 0.2 10.9 5 2 7 12 12 12 10 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|435852070|ref|YP_007313656.1| - 3.1e-41 135.8 36.1 0.00075 19.1 0.0 20.9 22 1 1 23 23 22 8 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|435852070|ref|YP_007313656.1| - 1e-25 89.3 29.9 0.0098 15.7 0.0 16.9 13 3 5 18 18 17 6 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|435852070|ref|YP_007313656.1| - 2.5e-22 79.3 11.9 0.0074 15.0 0.0 9.7 4 3 3 11 11 11 6 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|435852070|ref|YP_007313656.1| - 4e-16 59.1 7.5 0.49 10.2 0.1 12.5 8 3 5 13 13 11 2 Domain of Unknown Function (DUF3856) TPR_15 PF13429.1 gi|435852070|ref|YP_007313656.1| - 1.3e-14 53.9 13.8 0.0062 15.6 0.0 10.2 4 3 4 9 9 9 3 Tetratricopeptide repeat TPR_3 PF07720.7 gi|435852070|ref|YP_007313656.1| - 7e-14 51.2 29.6 0.15 11.8 0.0 13.0 13 0 0 13 13 12 4 Tetratricopeptide repeat MIT PF04212.13 gi|435852070|ref|YP_007313656.1| - 2.8e-13 49.5 51.6 0.025 14.4 0.0 16.2 16 3 2 18 18 17 4 MIT (microtubule interacting and transport) domain BTAD PF03704.12 gi|435852070|ref|YP_007313656.1| - 2.8e-10 40.6 8.0 0.57 10.4 0.0 7.4 6 3 1 8 8 7 2 Bacterial transcriptional activator domain TPR_10 PF13374.1 gi|435852070|ref|YP_007313656.1| - 7.9e-09 35.1 29.6 2.6 8.0 0.0 12.4 15 0 0 15 15 12 2 Tetratricopeptide repeat TPR_5 PF12688.2 gi|435852070|ref|YP_007313656.1| - 1.5e-08 34.6 17.3 2.7 8.0 0.2 9.9 9 2 0 11 11 11 2 Tetratrico peptide repeat Alkyl_sulf_dimr PF14863.1 gi|435852070|ref|YP_007313656.1| - 4.4e-06 26.9 9.4 1.1 9.5 0.0 6.5 6 1 1 7 7 7 2 Alkyl sulfatase dimerisation TPR_20 PF14561.1 gi|435852070|ref|YP_007313656.1| - 1.8e-05 24.7 14.6 1.9 8.6 0.1 7.8 5 1 3 8 8 8 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|435852070|ref|YP_007313656.1| - 2.1e-05 24.4 0.1 76 4.1 0.0 8.2 8 0 0 8 8 6 0 Tetratricopeptide repeat Aida_N PF08910.5 gi|435852070|ref|YP_007313656.1| - 0.0016 18.6 8.7 3.6 7.8 0.1 6.6 4 2 2 6 6 5 1 Aida N-terminus TPR_21 PF09976.4 gi|435852070|ref|YP_007313656.1| - 0.0024 17.7 0.1 0.0024 17.7 0.0 4.3 5 0 0 5 5 5 1 Tetratricopeptide repeat Paf67 PF10255.4 gi|435852070|ref|YP_007313656.1| - 0.0098 14.8 10.8 0.064 12.1 0.0 5.6 6 1 1 7 7 7 1 RNA polymerase I-associated factor PAF67 PPTA PF01239.17 gi|435852070|ref|YP_007313656.1| - 0.013 14.8 3.3 5.8 6.4 0.0 4.6 4 0 0 4 4 4 0 Protein prenyltransferase alpha subunit repeat DUF3105 PF11303.3 gi|435852070|ref|YP_007313656.1| - 0.067 13.0 0.2 4.8 7.0 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3105) Coatomer_E PF04733.9 gi|435852070|ref|YP_007313656.1| - 0.77 8.9 10.7 5.9 5.9 0.4 4.2 4 1 0 4 4 3 0 Coatomer epsilon subunit DUF2225 PF09986.4 gi|435852070|ref|YP_007313656.1| - 3.9 6.8 23.8 3.1 7.2 0.2 6.0 4 2 2 6 6 6 0 Uncharacterized protein conserved in bacteria (DUF2225) AzlD PF05437.7 gi|435852071|ref|YP_007313657.1| - 1.2e-22 79.7 5.9 1.4e-22 79.5 4.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AzlC PF03591.9 gi|435852072|ref|YP_007313658.1| - 3.1e-43 147.1 10.3 3.1e-43 147.1 7.1 1.8 2 0 0 2 2 2 1 AzlC protein V_ATPase_I PF01496.14 gi|435852072|ref|YP_007313658.1| - 2.9 5.6 9.5 1.9 6.2 0.2 2.1 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family RuBisCO_large PF00016.15 gi|435852073|ref|YP_007313659.1| - 6.9e-76 255.0 0.3 1.8e-58 197.8 0.0 2.1 1 1 1 2 2 2 2 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|435852073|ref|YP_007313659.1| - 8e-22 77.2 0.0 1.6e-21 76.2 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain EamA PF00892.15 gi|435852074|ref|YP_007313660.1| - 5.9e-17 61.8 36.4 6.2e-14 52.1 9.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|435852074|ref|YP_007313660.1| - 3.6e-08 33.5 5.2 3.6e-08 33.5 3.6 4.0 1 1 2 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|435852074|ref|YP_007313660.1| - 0.01 15.5 0.5 0.01 15.5 0.3 3.9 2 1 1 3 3 3 0 Triose-phosphate Transporter family UPF0546 PF10639.4 gi|435852074|ref|YP_007313660.1| - 0.1 12.4 0.3 0.1 12.4 0.2 2.4 2 1 1 3 3 3 0 Uncharacterised protein family UPF0546 RskA PF10099.4 gi|435852074|ref|YP_007313660.1| - 1.9 8.1 4.9 0.32 10.7 0.2 2.1 2 1 0 2 2 2 0 Anti-sigma-K factor rskA DUF1418 PF07214.7 gi|435852074|ref|YP_007313660.1| - 4.6 6.9 11.3 0.28 10.8 1.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1418) DUF4112 PF13430.1 gi|435852076|ref|YP_007313662.1| - 0.022 14.6 0.2 0.026 14.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4112) Cad PF03596.8 gi|435852076|ref|YP_007313662.1| - 0.024 14.3 1.5 0.026 14.2 1.1 1.1 1 0 0 1 1 1 0 Cadmium resistance transporter AAA_4 PF04326.9 gi|435852077|ref|YP_007313663.1| - 6.5e-20 71.4 0.3 6.5e-20 71.4 0.2 1.8 2 0 0 2 2 2 1 Divergent AAA domain DUF2227 PF09988.4 gi|435852078|ref|YP_007313664.1| - 1.8e-30 105.7 9.2 2e-28 99.1 4.8 2.1 1 1 1 2 2 2 2 Uncharacterized metal-binding protein (DUF2227) DUF457 PF04307.9 gi|435852078|ref|YP_007313664.1| - 3.7e-05 23.0 7.8 5.9e-05 22.4 5.4 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF1724 PF08350.5 gi|435852079|ref|YP_007313665.1| - 2.4e-13 49.3 0.0 4.3e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) Perilipin PF03036.11 gi|435852080|ref|YP_007313666.1| - 0.005 15.7 9.2 0.022 13.6 5.6 1.9 1 1 1 2 2 2 2 Perilipin family Phe_tRNA-synt_N PF02912.13 gi|435852080|ref|YP_007313666.1| - 0.028 14.1 7.1 0.87 9.3 0.3 3.7 1 1 3 4 4 4 0 Aminoacyl tRNA synthetase class II, N-terminal domain Smr PF01713.16 gi|435852080|ref|YP_007313666.1| - 0.029 14.5 0.1 0.073 13.2 0.1 1.9 1 1 0 1 1 1 0 Smr domain Virul_fac_BrkB PF03631.10 gi|435852080|ref|YP_007313666.1| - 0.034 13.5 2.4 0.35 10.1 1.4 2.0 1 1 0 1 1 1 0 Virulence factor BrkB DUF445 PF04286.7 gi|435852080|ref|YP_007313666.1| - 0.078 12.4 4.0 0.22 10.9 2.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF445) Phage_min_cap2 PF06152.6 gi|435852080|ref|YP_007313666.1| - 0.11 11.4 9.9 0.14 11.0 6.8 1.1 1 0 0 1 1 1 0 Phage minor capsid protein 2 MT0933_antitox PF14013.1 gi|435852080|ref|YP_007313666.1| - 0.13 12.4 2.5 0.95 9.6 1.5 2.5 2 1 0 2 2 2 0 MT0933-like antitoxin protein Herpes_UL51 PF04540.8 gi|435852080|ref|YP_007313666.1| - 0.13 11.7 3.4 0.64 9.5 1.1 2.3 1 1 1 2 2 2 0 Herpesvirus UL51 protein Activator-TraM PF11657.3 gi|435852080|ref|YP_007313666.1| - 0.17 11.3 6.7 1.6 8.1 0.8 2.6 1 1 2 3 3 3 0 Transcriptional activator TraM ARGLU PF15346.1 gi|435852080|ref|YP_007313666.1| - 0.22 11.2 2.8 0.77 9.5 0.7 2.0 1 1 2 3 3 3 0 Arginine and glutamate-rich 1 DUF503 PF04456.7 gi|435852080|ref|YP_007313666.1| - 0.24 11.0 1.5 0.91 9.1 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF503) RNA_pol_Rpb1_4 PF05000.12 gi|435852080|ref|YP_007313666.1| - 0.24 11.1 6.1 0.4 10.4 1.4 2.5 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 4 PhaP_Bmeg PF09602.5 gi|435852080|ref|YP_007313666.1| - 0.3 10.8 7.8 0.74 9.6 5.4 1.7 1 1 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) YpjP PF14005.1 gi|435852080|ref|YP_007313666.1| - 0.32 10.7 3.7 1.1 8.9 1.9 1.9 1 1 1 2 2 2 0 YpjP-like protein MCP_N PF05581.7 gi|435852080|ref|YP_007313666.1| - 0.35 11.0 3.3 0.46 10.6 1.5 1.8 1 1 1 2 2 2 0 Vibrio chemotaxis protein N terminus DUF1870 PF08965.5 gi|435852080|ref|YP_007313666.1| - 0.63 9.7 3.1 1.2 8.7 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1870) YtxH PF12732.2 gi|435852080|ref|YP_007313666.1| - 0.84 10.0 5.8 8.2 6.8 4.0 2.3 1 1 0 1 1 1 0 YtxH-like protein ATP-synt_B PF00430.13 gi|435852080|ref|YP_007313666.1| - 1.4 8.7 8.6 1.6 8.5 4.8 1.8 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) SecD_SecF PF02355.11 gi|435852080|ref|YP_007313666.1| - 2.7 7.1 10.3 5.6 6.0 0.4 3.5 1 1 2 3 3 3 0 Protein export membrane protein CtnDOT_TraJ PF07863.6 gi|435852080|ref|YP_007313666.1| - 8.1 6.9 11.8 4.5e+02 1.3 0.1 3.3 1 1 1 2 2 2 0 Homologues of TraJ from Bacteroides conjugative transposon MFS_1 PF07690.11 gi|435852081|ref|YP_007313667.1| - 3.3e-55 187.2 45.0 3.3e-55 187.2 31.2 2.3 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|435852081|ref|YP_007313667.1| - 9.3e-10 37.6 11.2 9.3e-10 37.6 7.7 2.5 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|435852081|ref|YP_007313667.1| - 4.3e-09 35.0 13.3 1.4e-07 30.0 4.6 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|435852081|ref|YP_007313667.1| - 7e-08 31.2 43.6 0.00012 20.6 15.7 3.0 1 1 2 3 3 3 2 MFS/sugar transport protein PUCC PF03209.10 gi|435852081|ref|YP_007313667.1| - 0.00016 20.5 6.6 0.00016 20.5 4.6 2.3 2 0 0 2 2 2 2 PUCC protein MFS_1_like PF12832.2 gi|435852081|ref|YP_007313667.1| - 0.027 14.2 7.6 0.049 13.4 0.2 3.8 3 0 0 3 3 3 0 MFS_1 like family NPCBM_assoc PF10633.4 gi|435852082|ref|YP_007313668.1| - 2.1e-05 24.4 0.0 0.028 14.4 0.0 2.6 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|435852082|ref|YP_007313668.1| - 0.00013 21.9 4.2 0.0016 18.4 0.3 3.3 2 1 2 4 4 4 1 CARDB ABC2_membrane_3 PF12698.2 gi|435852083|ref|YP_007313669.1| - 2.4e-41 141.9 23.1 2.9e-41 141.6 16.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|435852083|ref|YP_007313669.1| - 7.9e-38 129.7 19.7 4e-34 117.6 11.0 2.3 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|435852083|ref|YP_007313669.1| - 9.9e-22 77.0 15.1 1.4e-21 76.6 10.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435852083|ref|YP_007313669.1| - 1.5e-09 37.4 18.1 2.3e-09 36.7 12.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2074 PF09847.4 gi|435852083|ref|YP_007313669.1| - 1.3e-05 24.1 15.5 0.0005 18.9 6.9 2.2 2 0 0 2 2 2 2 Predicted permease (DUF2074) CcmB PF03379.8 gi|435852083|ref|YP_007313669.1| - 2.5e-05 23.6 4.2 2.5e-05 23.6 2.9 2.4 2 0 0 2 2 2 1 CcmB protein HlyD_3 PF13437.1 gi|435852083|ref|YP_007313669.1| - 0.016 15.5 0.0 0.03 14.6 0.0 1.4 1 0 0 1 1 1 0 HlyD family secretion protein ABC2_membrane_5 PF13346.1 gi|435852083|ref|YP_007313669.1| - 0.58 9.4 24.3 0.19 10.9 11.2 3.1 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|435852084|ref|YP_007313670.1| - 4.9e-30 104.6 0.0 9.3e-30 103.7 0.0 1.4 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|435852084|ref|YP_007313670.1| - 3.9e-15 56.5 0.1 1.3e-09 38.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|435852084|ref|YP_007313670.1| - 0.00012 21.5 0.3 0.00024 20.5 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|435852084|ref|YP_007313670.1| - 0.00073 19.9 0.2 0.0012 19.2 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|435852084|ref|YP_007313670.1| - 0.0037 16.3 0.0 0.62 9.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|435852084|ref|YP_007313670.1| - 0.027 14.3 0.0 0.98 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|435852084|ref|YP_007313670.1| - 0.032 13.4 0.1 0.61 9.2 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|435852084|ref|YP_007313670.1| - 0.032 13.4 0.1 0.1 11.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DEAD PF00270.24 gi|435852084|ref|YP_007313670.1| - 0.12 11.9 0.0 12 5.3 0.0 2.2 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|435852084|ref|YP_007313670.1| - 0.15 11.5 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain TetR_N PF00440.18 gi|435852085|ref|YP_007313671.1| - 1.1e-15 56.9 0.3 2e-15 56.1 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family NACHT PF05729.7 gi|435852085|ref|YP_007313671.1| - 0.011 15.3 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain HTH_7 PF02796.10 gi|435852085|ref|YP_007313671.1| - 0.013 15.3 0.2 1.7 8.5 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|435852085|ref|YP_007313671.1| - 0.048 13.3 0.0 7.2 6.4 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HD_2 PF12917.2 gi|435852085|ref|YP_007313671.1| - 0.12 12.1 0.7 0.16 11.7 0.1 1.4 2 0 0 2 2 2 0 HD containing hydrolase-like enzyme OTCace PF00185.19 gi|435852086|ref|YP_007313672.1| - 3.3e-57 192.7 0.0 5e-57 192.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|435852086|ref|YP_007313672.1| - 6.8e-50 168.4 0.3 9.7e-50 167.9 0.2 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GARS_A PF01071.14 gi|435852087|ref|YP_007313673.1| - 2.7e-54 183.6 0.3 5.8e-54 182.6 0.1 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|435852087|ref|YP_007313673.1| - 2.5e-31 108.0 1.5 1.8e-30 105.3 0.3 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|435852087|ref|YP_007313673.1| - 1.2e-22 79.9 1.2 6.4e-22 77.5 0.2 2.6 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|435852087|ref|YP_007313673.1| - 1.6e-14 54.0 0.0 5.6e-14 52.2 0.0 1.8 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|435852087|ref|YP_007313673.1| - 0.065 12.5 0.0 0.26 10.5 0.0 1.9 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.9 gi|435852087|ref|YP_007313673.1| - 0.074 12.9 0.0 0.16 11.8 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain Pribosyltran PF00156.22 gi|435852088|ref|YP_007313674.1| - 3.7e-14 52.5 2.6 1e-13 51.1 1.8 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|435852088|ref|YP_007313674.1| - 0.076 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase DUF46 PF01864.12 gi|435852089|ref|YP_007313675.1| - 1.9e-50 171.1 3.8 2.1e-50 171.0 2.7 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|435852089|ref|YP_007313675.1| - 1e-08 35.1 4.7 1e-08 35.1 3.3 1.7 1 1 1 2 2 2 1 Cytidylyltransferase family ResB PF05140.9 gi|435852090|ref|YP_007313676.1| - 0.0026 16.4 0.0 0.073 11.6 0.0 2.2 2 0 0 2 2 2 2 ResB-like family ABC2_membrane_2 PF12679.2 gi|435852090|ref|YP_007313676.1| - 0.096 11.5 19.8 0.27 10.0 13.4 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein YfhO PF09586.5 gi|435852090|ref|YP_007313676.1| - 0.14 10.1 2.3 0.19 9.7 1.6 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Cytochrom_C_asm PF01578.15 gi|435852091|ref|YP_007313677.1| - 7.2e-33 113.9 19.6 7.2e-33 113.9 13.6 1.8 2 0 0 2 2 2 1 Cytochrome C assembly protein Exonuc_VII_S PF02609.11 gi|435852092|ref|YP_007313678.1| - 3.1e-20 71.6 4.6 3.1e-20 71.6 3.2 1.4 2 0 0 2 2 2 1 Exonuclease VII small subunit IncA PF04156.9 gi|435852092|ref|YP_007313678.1| - 0.15 11.6 2.8 0.17 11.4 1.9 1.1 1 0 0 1 1 1 0 IncA protein FCH PF00611.18 gi|435852092|ref|YP_007313678.1| - 0.16 12.1 0.8 0.2 11.8 0.5 1.2 1 0 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain bZIP_1 PF00170.16 gi|435852092|ref|YP_007313678.1| - 0.65 9.9 3.8 0.44 10.5 0.2 2.1 2 0 0 2 2 2 0 bZIP transcription factor Exonuc_VII_L PF02601.10 gi|435852093|ref|YP_007313679.1| - 1.8e-77 260.6 0.0 3.8e-70 236.6 0.0 2.1 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|435852093|ref|YP_007313679.1| - 5e-31 106.4 0.0 9.3e-31 105.6 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|435852093|ref|YP_007313679.1| - 3.1e-06 26.9 0.0 7.2e-06 25.7 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain NYD-SP28 PF14772.1 gi|435852093|ref|YP_007313679.1| - 0.0099 15.9 0.1 0.02 14.9 0.0 1.4 1 0 0 1 1 1 1 Sperm tail DUF86 PF01934.12 gi|435852093|ref|YP_007313679.1| - 0.032 13.8 0.1 0.066 12.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF86 Epimerase PF01370.16 gi|435852094|ref|YP_007313680.1| - 3.9e-65 219.5 0.1 4.7e-65 219.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|435852094|ref|YP_007313680.1| - 1.1e-10 40.8 0.0 1.9e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|435852094|ref|YP_007313680.1| - 2.3e-05 23.7 0.0 3.8e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.1 gi|435852094|ref|YP_007313680.1| - 0.00015 21.7 0.0 0.0003 20.8 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding Epimerase_Csub PF13950.1 gi|435852094|ref|YP_007313680.1| - 0.0044 16.9 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit 3Beta_HSD PF01073.14 gi|435852094|ref|YP_007313680.1| - 0.0063 15.2 0.0 0.0087 14.7 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase_2 PF02350.14 gi|435852095|ref|YP_007313681.1| - 1.5e-44 152.2 0.0 1.9e-44 151.8 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.1 gi|435852095|ref|YP_007313681.1| - 0.09 12.4 0.0 2.3 7.9 0.0 2.2 1 1 1 2 2 2 0 Glycosyltransferase Family 4 Polysacc_synt PF01943.12 gi|435852096|ref|YP_007313682.1| - 5.7e-30 104.5 26.2 5.7e-30 104.5 18.2 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|435852096|ref|YP_007313682.1| - 1.3e-18 67.3 22.6 1.3e-18 67.3 15.7 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein MatE PF01554.13 gi|435852096|ref|YP_007313682.1| - 8e-14 51.5 29.7 2.1e-09 37.2 10.0 2.6 2 1 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|435852096|ref|YP_007313682.1| - 3.7e-13 49.5 6.1 3.7e-13 49.5 4.3 4.8 3 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|435852096|ref|YP_007313682.1| - 5.7e-11 41.5 35.1 1.1e-10 40.4 24.3 1.5 1 1 0 1 1 1 1 MviN-like protein Glycos_transf_2 PF00535.21 gi|435852097|ref|YP_007313683.1| - 5.3e-25 88.0 0.0 8.2e-25 87.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|435852097|ref|YP_007313683.1| - 3.2e-08 33.6 0.0 4.5e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|435852097|ref|YP_007313683.1| - 0.11 11.7 0.0 0.2 10.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 21 T2SE PF00437.15 gi|435852098|ref|YP_007313684.1| - 4.3e-36 124.2 0.0 7.8e-36 123.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein CUB PF00431.15 gi|435852098|ref|YP_007313684.1| - 0.0073 16.3 0.3 0.026 14.5 0.2 2.0 1 0 0 1 1 1 1 CUB domain cobW PF02492.14 gi|435852098|ref|YP_007313684.1| - 0.0079 15.6 0.0 0.022 14.2 0.0 1.8 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|435852098|ref|YP_007313684.1| - 0.016 14.2 0.0 0.032 13.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|435852098|ref|YP_007313684.1| - 0.04 13.3 0.1 0.081 12.3 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|435852098|ref|YP_007313684.1| - 0.052 14.0 0.0 0.28 11.6 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein KaiC PF06745.8 gi|435852098|ref|YP_007313684.1| - 0.059 12.4 0.0 0.19 10.8 0.0 1.8 1 0 0 1 1 1 0 KaiC AAA_29 PF13555.1 gi|435852098|ref|YP_007313684.1| - 0.11 12.0 0.1 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|435852098|ref|YP_007313684.1| - 0.13 12.0 0.0 0.44 10.3 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain ABC_tran PF00005.22 gi|435852098|ref|YP_007313684.1| - 0.14 12.4 0.1 0.53 10.5 0.0 2.0 2 0 0 2 2 2 0 ABC transporter Fer4 PF00037.22 gi|435852100|ref|YP_007313686.1| - 8.6e-10 37.8 13.9 4.1e-05 22.9 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435852100|ref|YP_007313686.1| - 7.9e-09 35.1 31.4 8.3e-07 28.7 11.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435852100|ref|YP_007313686.1| - 3.3e-08 33.0 16.3 2.9e-05 23.7 4.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435852100|ref|YP_007313686.1| - 3.8e-07 30.3 14.6 5.2e-07 29.9 10.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435852100|ref|YP_007313686.1| - 3.2e-06 27.3 14.0 4.4e-06 26.8 9.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435852100|ref|YP_007313686.1| - 5.6e-06 27.0 14.4 0.00024 21.7 2.4 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|435852100|ref|YP_007313686.1| - 9.2e-06 25.4 11.8 1.2e-05 25.0 8.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435852100|ref|YP_007313686.1| - 1.1e-05 25.0 16.6 0.00019 21.1 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|435852100|ref|YP_007313686.1| - 0.00043 20.6 20.5 0.024 15.1 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435852100|ref|YP_007313686.1| - 0.00055 20.0 17.3 0.1 12.9 5.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435852100|ref|YP_007313686.1| - 0.0017 18.3 16.4 0.0032 17.4 11.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852100|ref|YP_007313686.1| - 0.046 14.2 12.5 0.22 12.1 2.9 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|435852100|ref|YP_007313686.1| - 0.09 13.1 3.7 0.09 13.1 2.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435852100|ref|YP_007313686.1| - 0.3 11.5 14.8 1 9.8 1.2 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|435852100|ref|YP_007313686.1| - 0.64 10.4 20.1 0.24 11.8 3.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.16 gi|435852101|ref|YP_007313687.1| - 1.2e-08 35.3 0.1 4.1e-08 33.5 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|435852101|ref|YP_007313687.1| - 1.8e-06 27.9 0.1 4.6e-06 26.6 0.1 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|435852101|ref|YP_007313687.1| - 1.4e-05 25.2 0.1 3e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain FrhB_FdhB_C PF04432.8 gi|435852101|ref|YP_007313687.1| - 0.08 12.3 0.1 0.19 11.1 0.1 1.6 1 0 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus DUF2551 PF10826.3 gi|435852102|ref|YP_007313688.1| - 4.7e-33 112.9 0.6 5.6e-33 112.6 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Prenyltransf PF01255.14 gi|435852103|ref|YP_007313689.1| - 5.8e-74 247.9 0.0 7.5e-74 247.6 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase FtsA PF14450.1 gi|435852103|ref|YP_007313689.1| - 0.025 14.4 0.1 0.072 12.9 0.0 1.8 2 0 0 2 2 2 0 Cell division protein FtsA RNA_pol_A_bac PF01000.21 gi|435852104|ref|YP_007313690.1| - 8.5e-28 96.7 0.0 2.1e-27 95.4 0.0 1.6 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|435852104|ref|YP_007313690.1| - 2.4e-12 45.7 0.0 3e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.22 gi|435852104|ref|YP_007313690.1| - 1e-06 28.0 13.1 4.1e-05 22.9 2.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435852104|ref|YP_007313690.1| - 1.5e-06 28.3 9.1 1.5e-06 28.3 6.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435852104|ref|YP_007313690.1| - 2.5e-06 27.7 8.8 2.5e-06 27.7 6.1 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435852104|ref|YP_007313690.1| - 5.2e-06 26.3 9.3 0.026 14.5 3.7 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435852104|ref|YP_007313690.1| - 2.6e-05 23.9 13.2 3.4e-05 23.5 6.5 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435852104|ref|YP_007313690.1| - 0.00032 21.3 11.7 0.0091 16.7 0.8 3.1 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|435852104|ref|YP_007313690.1| - 0.0074 16.7 5.3 0.0074 16.7 3.7 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435852104|ref|YP_007313690.1| - 0.034 14.0 5.8 0.034 14.0 4.0 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435852104|ref|YP_007313690.1| - 0.039 13.8 3.4 0.039 13.8 2.3 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|435852104|ref|YP_007313690.1| - 0.13 12.6 17.7 0.48 10.8 1.3 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain OapA PF04225.7 gi|435852104|ref|YP_007313690.1| - 0.15 11.9 0.0 0.67 9.8 0.0 2.0 2 0 0 2 2 2 0 Opacity-associated protein A LysM-like domain Fer4_18 PF13746.1 gi|435852104|ref|YP_007313690.1| - 0.16 12.4 15.0 0.55 10.6 3.5 2.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852104|ref|YP_007313690.1| - 0.27 11.8 11.8 0.61 10.6 1.8 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|435852104|ref|YP_007313690.1| - 1.4 9.4 21.7 0.28 11.6 1.0 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435852104|ref|YP_007313690.1| - 1.5 8.7 22.0 0.15 11.9 9.5 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Ribosomal_S11 PF00411.14 gi|435852105|ref|YP_007313691.1| - 3.4e-43 146.3 1.2 3.9e-43 146.0 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|435852106|ref|YP_007313692.1| - 7.3e-12 44.5 0.0 1.3e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|435852106|ref|YP_007313692.1| - 0.0063 16.8 1.1 0.013 15.8 0.4 1.9 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.17 gi|435852107|ref|YP_007313693.1| - 3.8e-30 104.4 0.1 4.6e-30 104.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_5 PF14520.1 gi|435852107|ref|YP_007313693.1| - 0.051 13.7 0.1 0.15 12.2 0.0 1.7 2 0 0 2 2 2 0 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|435852107|ref|YP_007313693.1| - 0.099 12.7 0.1 0.23 11.6 0.1 1.6 1 0 0 1 1 1 0 IMS family HHH motif NUDIX PF00293.23 gi|435852108|ref|YP_007313694.1| - 1.7e-18 66.5 0.0 2.7e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain OrfB_Zn_ribbon PF07282.6 gi|435852108|ref|YP_007313694.1| - 1.4e-05 24.6 0.0 2.7e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|435852108|ref|YP_007313694.1| - 1.7e-05 24.2 0.2 5e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain NUDIX-like PF09296.6 gi|435852108|ref|YP_007313694.1| - 0.00019 21.7 0.0 0.00029 21.1 0.0 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase-like rudimentary NUDIX domain DZR PF12773.2 gi|435852108|ref|YP_007313694.1| - 0.066 13.0 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|435852108|ref|YP_007313694.1| - 0.55 9.9 4.0 2.4 7.9 0.3 2.6 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Stomoxyn PF11585.3 gi|435852109|ref|YP_007313695.1| - 0.32 10.8 0.9 2.2 8.1 0.9 2.1 2 0 0 2 2 2 0 Insect antimicrobial peptide, stomoxyn Fic_N PF13784.1 gi|435852110|ref|YP_007313696.1| - 9.3e-29 99.1 0.0 1.6e-28 98.3 0.0 1.4 1 0 0 1 1 1 1 Fic/DOC family N-terminal Fic PF02661.13 gi|435852110|ref|YP_007313696.1| - 3.1e-21 75.8 0.0 7.3e-21 74.6 0.0 1.6 1 0 0 1 1 1 1 Fic/DOC family HTH_13 PF11972.3 gi|435852110|ref|YP_007313696.1| - 1.6e-05 24.6 0.0 5.9e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_24 PF13412.1 gi|435852110|ref|YP_007313696.1| - 0.00052 19.3 0.1 0.0012 18.1 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|435852110|ref|YP_007313696.1| - 0.0023 17.5 0.2 0.011 15.3 0.1 2.2 2 0 0 2 2 2 1 HTH domain HTH_Mga PF08280.6 gi|435852110|ref|YP_007313696.1| - 0.014 15.1 0.0 0.041 13.6 0.0 1.8 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain DUF1612 PF07756.7 gi|435852110|ref|YP_007313696.1| - 0.051 13.6 0.0 0.092 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1612) TruB_N PF01509.13 gi|435852111|ref|YP_007313697.1| - 1.1e-24 87.3 0.2 1.8e-14 54.1 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|435852111|ref|YP_007313697.1| - 3.4e-16 58.9 0.1 6.9e-16 57.9 0.1 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|435852111|ref|YP_007313697.1| - 2.1e-15 56.1 0.2 4.4e-15 55.1 0.1 1.6 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.1 gi|435852112|ref|YP_007313698.1| - 1.8e-20 73.6 0.8 1.2e-19 70.9 0.6 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|435852112|ref|YP_007313698.1| - 7.6e-13 48.8 0.1 1.3e-12 48.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|435852112|ref|YP_007313698.1| - 3.2e-11 44.1 0.1 6.6e-11 43.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|435852112|ref|YP_007313698.1| - 2.6e-06 27.3 0.7 4.2e-06 26.7 0.5 1.4 1 1 0 1 1 1 1 Shikimate kinase Cytidylate_kin PF02224.13 gi|435852112|ref|YP_007313698.1| - 3.2e-06 26.6 0.2 4.4e-06 26.2 0.1 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_33 PF13671.1 gi|435852112|ref|YP_007313698.1| - 2.7e-05 24.0 0.4 0.00044 20.1 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|435852112|ref|YP_007313698.1| - 3.5e-05 23.8 0.4 8.4e-05 22.5 0.2 1.8 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|435852112|ref|YP_007313698.1| - 0.00011 22.0 0.1 0.00019 21.3 0.1 1.6 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|435852112|ref|YP_007313698.1| - 0.00031 20.1 1.1 0.21 10.9 0.0 2.2 1 1 1 2 2 2 2 Dephospho-CoA kinase PRK PF00485.13 gi|435852112|ref|YP_007313698.1| - 0.066 12.7 0.6 0.73 9.3 0.1 2.3 1 1 2 3 3 3 0 Phosphoribulokinase / Uridine kinase family DUF106 PF01956.11 gi|435852113|ref|YP_007313699.1| - 1.6e-43 148.1 5.5 1.9e-43 147.8 3.8 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|435852113|ref|YP_007313699.1| - 0.0021 17.7 9.6 0.0043 16.7 6.3 1.7 1 1 1 2 2 2 1 60Kd inner membrane protein DUF4446 PF14584.1 gi|435852113|ref|YP_007313699.1| - 0.099 12.4 3.1 0.16 11.8 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) ADK PF00406.17 gi|435852114|ref|YP_007313700.1| - 7.6e-59 197.9 0.0 9.2e-59 197.6 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|435852114|ref|YP_007313700.1| - 1.4e-13 50.2 1.8 3.4e-13 48.9 1.2 1.7 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|435852114|ref|YP_007313700.1| - 7.8e-12 46.0 0.3 1.5e-11 45.1 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|435852114|ref|YP_007313700.1| - 1.2e-05 25.6 0.1 3.6e-05 24.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|435852114|ref|YP_007313700.1| - 9.1e-05 22.3 0.0 0.00022 21.1 0.0 1.6 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|435852114|ref|YP_007313700.1| - 0.00039 20.4 0.0 0.0049 16.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|435852114|ref|YP_007313700.1| - 0.0015 18.7 0.0 0.0033 17.6 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|435852114|ref|YP_007313700.1| - 0.0047 17.0 0.0 0.058 13.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain Cytidylate_kin2 PF13189.1 gi|435852114|ref|YP_007313700.1| - 0.022 14.6 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase-like family zf-IS66 PF13005.2 gi|435852114|ref|YP_007313700.1| - 0.031 14.2 0.6 0.073 13.0 0.0 1.9 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 SKI PF01202.17 gi|435852114|ref|YP_007313700.1| - 0.069 13.0 0.0 0.21 11.4 0.0 1.8 2 0 0 2 2 2 0 Shikimate kinase KTI12 PF08433.5 gi|435852114|ref|YP_007313700.1| - 0.074 12.2 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|435852114|ref|YP_007313700.1| - 0.079 12.0 0.0 0.23 10.5 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin ANF_receptor PF01094.23 gi|435852114|ref|YP_007313700.1| - 0.096 11.4 0.0 0.16 10.7 0.0 1.4 1 1 0 1 1 1 0 Receptor family ligand binding region Thymidylate_kin PF02223.12 gi|435852114|ref|YP_007313700.1| - 0.1 11.9 0.1 0.33 10.2 0.0 1.8 2 1 0 2 2 2 0 Thymidylate kinase Mg_chelatase PF01078.16 gi|435852114|ref|YP_007313700.1| - 0.14 11.2 0.0 0.28 10.3 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SecY PF00344.15 gi|435852115|ref|YP_007313701.1| - 5e-95 318.3 28.5 5.9e-95 318.1 19.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|435852115|ref|YP_007313701.1| - 8.7e-11 41.1 0.6 8.7e-11 41.1 0.4 2.2 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|435852116|ref|YP_007313702.1| - 5.1e-32 110.9 0.5 6.1e-32 110.7 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|435852117|ref|YP_007313703.1| - 2.6e-16 58.9 0.3 4e-16 58.3 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|435852118|ref|YP_007313704.1| - 2.4e-27 94.4 2.5 4.9e-27 93.4 1.1 2.0 3 0 0 3 3 3 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|435852118|ref|YP_007313704.1| - 1.9e-24 84.7 1.0 3.3e-24 83.9 0.7 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|435852119|ref|YP_007313705.1| - 3.7e-31 107.7 0.0 4.5e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|435852119|ref|YP_007313705.1| - 0.15 12.6 0.1 0.39 11.3 0.0 1.7 1 1 1 2 2 2 0 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|435852120|ref|YP_007313706.1| - 3e-56 189.3 9.2 3.4e-56 189.1 6.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF3253 PF11625.3 gi|435852120|ref|YP_007313706.1| - 0.067 13.0 1.6 4 7.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) CdhD PF03599.11 gi|435852120|ref|YP_007313706.1| - 0.1 11.0 0.0 0.14 10.6 0.0 1.2 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF350 PF03994.9 gi|435852120|ref|YP_007313706.1| - 0.16 11.7 0.0 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF350) Ribosomal_L32e PF01655.13 gi|435852121|ref|YP_007313707.1| - 6.1e-34 116.3 0.1 7.7e-34 116.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|435852122|ref|YP_007313708.1| - 3.6e-28 97.8 2.7 1.1e-17 64.3 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.14 gi|435852123|ref|YP_007313709.1| - 2.1e-25 89.0 0.0 2.7e-25 88.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|435852124|ref|YP_007313710.1| - 1.2e-19 69.3 2.9 1.3e-19 69.2 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-P11 PF03854.9 gi|435852124|ref|YP_007313710.1| - 0.00034 20.0 2.0 0.00042 19.7 1.4 1.1 1 0 0 1 1 1 1 P-11 zinc finger DUF4428 PF14471.1 gi|435852124|ref|YP_007313710.1| - 0.00051 19.7 0.4 0.00058 19.5 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L37ae PF01780.14 gi|435852124|ref|YP_007313710.1| - 0.0042 16.9 1.0 0.0046 16.7 0.7 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family DUF1451 PF07295.6 gi|435852124|ref|YP_007313710.1| - 0.036 13.8 0.8 0.04 13.6 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zf-UBR PF02207.15 gi|435852124|ref|YP_007313710.1| - 0.043 13.5 0.8 0.049 13.3 0.5 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) A2L_zn_ribbon PF08792.5 gi|435852124|ref|YP_007313710.1| - 0.099 12.1 2.5 0.17 11.3 1.7 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain DZR PF12773.2 gi|435852124|ref|YP_007313710.1| - 0.1 12.4 1.0 0.16 11.7 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF2318 PF10080.4 gi|435852124|ref|YP_007313710.1| - 0.13 12.0 0.4 0.13 12.0 0.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Sgf11 PF08209.6 gi|435852124|ref|YP_007313710.1| - 0.15 11.3 2.7 6.6 6.1 0.0 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) FYVE PF01363.16 gi|435852124|ref|YP_007313710.1| - 1.1 9.1 5.5 1.6 8.7 3.8 1.3 1 1 0 1 1 1 0 FYVE zinc finger Rsm1 PF08600.5 gi|435852124|ref|YP_007313710.1| - 2.2 8.2 5.0 7 6.5 0.3 2.0 1 1 1 2 2 2 0 Rsm1-like zf-C2HC_2 PF13913.1 gi|435852124|ref|YP_007313710.1| - 4.5 7.0 8.6 14 5.4 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2_6 PF13912.1 gi|435852124|ref|YP_007313710.1| - 5.6 7.0 7.0 2.1 8.3 0.6 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2757 PF10955.3 gi|435852124|ref|YP_007313710.1| - 5.9 7.1 7.0 4.8 7.4 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) Ribosomal_L5_C PF00673.16 gi|435852125|ref|YP_007313711.1| - 4.5e-27 93.6 0.0 6.7e-27 93.0 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|435852125|ref|YP_007313711.1| - 7.7e-16 57.6 0.2 1.4e-15 56.8 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|435852126|ref|YP_007313712.1| - 1.6e-26 91.7 0.4 3.5e-26 90.6 0.1 1.7 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.7 gi|435852126|ref|YP_007313712.1| - 3.5e-12 45.9 2.7 6.9e-12 45.0 1.9 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|435852126|ref|YP_007313712.1| - 1.5e-05 24.2 0.6 0.00011 21.5 0.0 2.3 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|435852126|ref|YP_007313712.1| - 7.2e-05 22.3 2.2 8.5e-05 22.1 0.1 2.3 2 0 0 2 2 2 1 KOW motif S4_2 PF13275.1 gi|435852126|ref|YP_007313712.1| - 0.0083 15.6 0.1 0.091 12.3 0.0 2.3 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|435852127|ref|YP_007313713.1| - 4.3e-06 26.2 4.1 9.5e-06 25.1 2.8 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.14 gi|435852128|ref|YP_007313714.1| - 4.7e-37 126.4 0.2 5.3e-37 126.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Tox-REase-9 PF15650.1 gi|435852128|ref|YP_007313714.1| - 0.024 14.8 0.1 1.5 9.0 0.0 2.2 2 0 0 2 2 2 0 Restriction endonuclease fold toxin 9 Ribosomal_S17 PF00366.15 gi|435852129|ref|YP_007313715.1| - 3.1e-28 97.5 3.3 3.8e-28 97.3 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|435852130|ref|YP_007313716.1| - 3.3e-25 87.5 0.4 4e-25 87.2 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Btz PF09405.5 gi|435852130|ref|YP_007313716.1| - 0.041 13.9 0.0 0.046 13.7 0.0 1.1 1 0 0 1 1 1 0 CASC3/Barentsz eIF4AIII binding DUF3023 PF11224.3 gi|435852130|ref|YP_007313716.1| - 0.16 11.5 1.0 0.52 9.9 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3023) Ribosomal_L29 PF00831.18 gi|435852131|ref|YP_007313717.1| - 2.1e-16 59.3 0.0 2.4e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.15 gi|435852132|ref|YP_007313718.1| - 2.2e-16 59.8 0.2 4e-16 59.0 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|435852132|ref|YP_007313718.1| - 3.8e-14 52.0 0.0 8.2e-14 50.9 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|435852132|ref|YP_007313718.1| - 0.0099 15.5 1.1 0.039 13.5 0.1 2.4 3 0 0 3 3 3 1 KH domain KH_4 PF13083.1 gi|435852132|ref|YP_007313718.1| - 0.026 14.1 0.1 0.091 12.4 0.0 1.9 1 0 0 1 1 1 0 KH domain KH_3 PF13014.1 gi|435852132|ref|YP_007313718.1| - 0.22 11.1 1.3 0.99 9.1 0.1 2.4 3 0 0 3 3 3 0 KH domain Ribosomal_L22 PF00237.14 gi|435852133|ref|YP_007313719.1| - 1.3e-28 99.0 0.0 1.5e-28 98.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|435852134|ref|YP_007313720.1| - 8.5e-24 82.9 0.2 1.5e-23 82.2 0.1 1.5 1 1 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.16 gi|435852134|ref|YP_007313720.1| - 0.086 11.5 0.0 0.096 11.4 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase DUF2521 PF10730.4 gi|435852134|ref|YP_007313720.1| - 0.13 12.1 0.0 7.4 6.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2521) Ribosomal_L2_C PF03947.13 gi|435852135|ref|YP_007313721.1| - 1.3e-46 157.5 0.9 2e-46 156.9 0.6 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|435852135|ref|YP_007313721.1| - 1.7e-14 53.5 0.0 4.9e-14 52.0 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|435852136|ref|YP_007313722.1| - 1.3e-15 57.0 1.3 1.7e-15 56.7 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L23 Acid_PPase PF12689.2 gi|435852136|ref|YP_007313722.1| - 0.05 13.2 0.1 0.055 13.0 0.1 1.0 1 0 0 1 1 1 0 Acid Phosphatase DUF3834 PF12916.2 gi|435852136|ref|YP_007313722.1| - 0.071 12.0 0.2 0.084 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) Ribosomal_L4 PF00573.17 gi|435852137|ref|YP_007313723.1| - 1.6e-45 154.8 1.1 1.8e-45 154.6 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|435852138|ref|YP_007313724.1| - 1.1e-67 228.2 1.4 1.2e-67 228.0 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 DUF4431 PF14485.1 gi|435852138|ref|YP_007313724.1| - 0.077 12.6 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4431) POR PF01558.13 gi|435852139|ref|YP_007313725.1| - 8.1e-38 130.0 0.1 9.5e-38 129.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|435852140|ref|YP_007313726.1| - 8.4e-25 87.1 0.3 1.6e-24 86.2 0.2 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|435852140|ref|YP_007313726.1| - 1.3e-10 41.1 0.2 3.1e-10 39.9 0.2 1.6 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|435852140|ref|YP_007313726.1| - 8.8e-09 34.6 11.1 8.2e-05 22.0 2.1 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435852140|ref|YP_007313726.1| - 9.6e-07 28.3 13.0 0.00011 21.9 1.7 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435852140|ref|YP_007313726.1| - 2.9e-06 26.9 10.3 6.9e-06 25.7 7.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435852140|ref|YP_007313726.1| - 4.9e-06 26.7 12.4 1.3e-05 25.3 8.6 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435852140|ref|YP_007313726.1| - 8.1e-06 25.7 13.1 0.0067 16.6 1.9 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435852140|ref|YP_007313726.1| - 0.00017 21.3 11.0 0.001 18.8 7.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain TPP_enzyme_N PF02776.13 gi|435852140|ref|YP_007313726.1| - 0.00048 19.6 0.1 0.0012 18.3 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_7 PF12838.2 gi|435852140|ref|YP_007313726.1| - 0.00064 20.0 12.6 0.00064 20.0 8.7 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435852140|ref|YP_007313726.1| - 0.0023 17.6 16.9 0.048 13.5 2.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435852140|ref|YP_007313726.1| - 0.26 11.7 14.3 3.9e+02 1.5 9.9 2.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435852140|ref|YP_007313726.1| - 0.39 10.7 12.8 2.3 8.2 9.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852140|ref|YP_007313726.1| - 1.3 9.6 15.7 0.82 10.2 1.4 3.3 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|435852140|ref|YP_007313726.1| - 2 8.7 12.4 6 7.3 1.8 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435852140|ref|YP_007313726.1| - 2 9.1 12.3 1.7 9.4 1.8 2.7 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|435852140|ref|YP_007313726.1| - 3.1 8.2 11.8 2.7 8.4 0.7 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Aldedh PF00171.17 gi|435852141|ref|YP_007313727.1| - 2.7e-23 82.0 1.0 6.6e-18 64.2 0.1 2.2 2 0 0 2 2 2 2 Aldehyde dehydrogenase family AA_kinase PF00696.23 gi|435852142|ref|YP_007313728.1| - 8.4e-36 123.7 0.2 1.4e-35 122.9 0.1 1.4 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.15 gi|435852142|ref|YP_007313728.1| - 8.8e-22 76.6 0.1 1.6e-21 75.7 0.1 1.5 1 0 0 1 1 1 1 PUA domain tRNA_NucTransf2 PF09249.6 gi|435852143|ref|YP_007313729.1| - 2e-44 150.1 0.0 3.8e-44 149.2 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|435852143|ref|YP_007313729.1| - 8.5e-10 38.8 0.0 2.2e-09 37.5 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain OGG_N PF07934.7 gi|435852146|ref|YP_007313732.1| - 5.5e-23 81.1 0.1 1.4e-22 79.8 0.1 1.7 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|435852146|ref|YP_007313732.1| - 3.6e-05 23.9 0.0 6.1e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|435852146|ref|YP_007313732.1| - 4.8e-05 22.8 0.0 0.00022 20.7 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif ADP_PFK_GK PF04587.10 gi|435852147|ref|YP_007313733.1| - 7.1e-66 222.2 0.0 8.1e-66 222.0 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region PfkB PF00294.19 gi|435852147|ref|YP_007313733.1| - 0.0019 17.3 0.0 0.37 9.8 0.0 2.3 2 0 0 2 2 2 2 pfkB family carbohydrate kinase ADP_PFK_GK PF04587.10 gi|435852148|ref|YP_007313734.1| - 2.4e-118 395.2 0.0 2.8e-118 394.9 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ArgJ PF01960.13 gi|435852149|ref|YP_007313735.1| - 1e-137 458.7 6.1 1.2e-137 458.4 4.2 1.0 1 0 0 1 1 1 1 ArgJ family CBS PF00571.23 gi|435852150|ref|YP_007313736.1| - 1.1e-37 127.4 4.0 2.1e-19 69.0 0.2 2.1 2 0 0 2 2 2 2 CBS domain Semialdhyde_dh PF01118.19 gi|435852151|ref|YP_007313737.1| - 1.7e-34 118.7 0.0 2.6e-34 118.1 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|435852151|ref|YP_007313737.1| - 7.4e-26 91.1 0.0 1.3e-25 90.3 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|435852151|ref|YP_007313737.1| - 0.00026 21.5 0.0 0.00048 20.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|435852151|ref|YP_007313737.1| - 0.0022 18.0 0.0 0.015 15.2 0.0 2.1 1 1 1 2 2 2 1 NADH(P)-binding F420_oxidored PF03807.12 gi|435852151|ref|YP_007313737.1| - 0.0029 18.0 0.0 0.0056 17.0 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.12 gi|435852151|ref|YP_007313737.1| - 0.022 13.6 0.1 0.048 12.5 0.1 1.5 1 0 0 1 1 1 0 Prephenate dehydrogenase DapB_N PF01113.15 gi|435852151|ref|YP_007313737.1| - 0.042 13.7 0.0 0.079 12.8 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus HATPase_c_4 PF13749.1 gi|435852152|ref|YP_007313738.1| - 2.1e-16 59.4 0.1 5.4e-16 58.1 0.0 1.7 1 0 0 1 1 1 1 ATP-dependent DNA helicase recG C-terminal AAA_4 PF04326.9 gi|435852152|ref|YP_007313738.1| - 3.3e-13 49.8 0.0 7.7e-13 48.6 0.0 1.7 1 0 0 1 1 1 1 Divergent AAA domain Disaggr_repeat PF06848.6 gi|435852153|ref|YP_007313739.1| - 2.4e-232 763.6 25.2 1e-78 262.9 2.0 3.4 3 0 0 3 3 3 3 Disaggregatase related repeat Disaggr_assoc PF08480.5 gi|435852153|ref|YP_007313739.1| - 8.4e-27 93.9 18.0 8.4e-27 93.9 12.5 2.8 3 0 0 3 3 3 1 Disaggregatase related PKD PF00801.15 gi|435852153|ref|YP_007313739.1| - 4.5e-19 67.9 35.4 1.6e-10 40.5 4.8 5.0 5 0 0 5 5 5 2 PKD domain TGFb_propeptide PF00688.13 gi|435852153|ref|YP_007313739.1| - 1.1e-11 44.5 0.0 0.34 10.1 0.0 6.0 6 0 0 6 6 6 5 TGF-beta propeptide Beta_helix PF13229.1 gi|435852153|ref|YP_007313739.1| - 5.6e-10 39.1 54.0 3.6e-05 23.5 12.0 4.0 2 1 1 3 3 3 2 Right handed beta helix region DDE_Tnp_1 PF01609.16 gi|435852154|ref|YP_007313740.1| - 3.7e-09 36.4 1.1 6e-09 35.7 0.7 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|435852154|ref|YP_007313740.1| - 0.00034 20.4 0.0 0.00099 18.9 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DUF92 PF01940.11 gi|435852155|ref|YP_007313741.1| - 2.5e-72 242.6 12.6 2.5e-72 242.6 8.8 2.7 3 0 0 3 3 3 1 Integral membrane protein DUF92 DUF2951 PF11166.3 gi|435852155|ref|YP_007313741.1| - 0.0048 16.7 0.1 0.036 13.9 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2951) Cupin_2 PF07883.6 gi|435852156|ref|YP_007313742.1| - 2.7e-14 52.3 0.1 4.6e-14 51.6 0.1 1.4 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.2 gi|435852156|ref|YP_007313742.1| - 3.3e-11 43.0 0.1 4.9e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|435852156|ref|YP_007313742.1| - 7.9e-09 35.2 0.1 1.3e-08 34.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|435852156|ref|YP_007313742.1| - 4.3e-05 23.6 0.0 6.1e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MannoseP_isomer PF01050.13 gi|435852156|ref|YP_007313742.1| - 0.0042 16.7 0.0 0.0078 15.8 0.0 1.5 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase EutQ PF06249.7 gi|435852156|ref|YP_007313742.1| - 0.0061 16.1 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ AraC_binding PF02311.14 gi|435852156|ref|YP_007313742.1| - 0.022 14.4 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain 2OG-FeII_Oxy_3 PF13640.1 gi|435852156|ref|YP_007313742.1| - 0.054 14.0 0.0 0.088 13.3 0.0 1.4 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily Nbl1_Borealin_N PF10444.4 gi|435852156|ref|YP_007313742.1| - 0.081 12.2 0.7 0.2 11.0 0.5 1.6 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal AMP-binding PF00501.23 gi|435852157|ref|YP_007313743.1| - 1.1e-82 277.6 0.0 1.4e-82 277.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|435852157|ref|YP_007313743.1| - 2.2e-18 66.9 1.9 3e-18 66.5 0.6 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Fer4_7 PF12838.2 gi|435852158|ref|YP_007313744.1| - 1e-08 35.4 12.6 1.3e-08 35.0 8.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435852158|ref|YP_007313744.1| - 2.1e-07 30.7 8.7 2.8e-07 30.2 6.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435852158|ref|YP_007313744.1| - 2.5e-05 23.6 16.4 0.0022 17.5 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435852158|ref|YP_007313744.1| - 4.1e-05 23.2 13.6 0.013 15.3 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435852158|ref|YP_007313744.1| - 4.4e-05 23.1 24.4 0.00072 19.3 9.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435852158|ref|YP_007313744.1| - 7.1e-05 22.5 13.6 0.0053 16.6 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435852158|ref|YP_007313744.1| - 0.00019 21.5 37.9 0.0051 17.0 11.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435852158|ref|YP_007313744.1| - 0.00063 20.0 12.5 0.045 14.1 2.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435852158|ref|YP_007313744.1| - 0.0033 17.4 13.7 0.035 14.1 9.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435852158|ref|YP_007313744.1| - 0.0039 17.9 13.9 0.097 13.4 9.9 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|435852158|ref|YP_007313744.1| - 0.0069 16.6 16.1 0.047 14.0 2.0 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435852158|ref|YP_007313744.1| - 0.013 15.8 9.4 0.04 14.2 1.2 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|435852158|ref|YP_007313744.1| - 0.03 14.7 15.1 0.055 13.9 1.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852158|ref|YP_007313744.1| - 0.13 12.8 12.3 0.15 12.6 1.4 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain P12 PF12669.2 gi|435852158|ref|YP_007313744.1| - 0.89 9.7 5.6 0.8 9.9 0.2 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family Fer4_3 PF12798.2 gi|435852158|ref|YP_007313744.1| - 1 10.1 16.5 0.97 10.1 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|435852159|ref|YP_007313745.1| - 6.4e-59 199.2 0.0 8e-59 198.9 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|435852159|ref|YP_007313745.1| - 7.3e-05 22.7 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain DUF134 PF02001.11 gi|435852159|ref|YP_007313745.1| - 0.085 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 POR PF01558.13 gi|435852160|ref|YP_007313746.1| - 2.3e-38 131.7 0.1 3.6e-38 131.1 0.1 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|435852160|ref|YP_007313746.1| - 1.6e-23 82.9 0.1 2.5e-23 82.3 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain P-II PF00543.17 gi|435852161|ref|YP_007313747.1| - 0.0004 20.8 0.5 0.00051 20.4 0.4 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF1538 PF07556.6 gi|435852162|ref|YP_007313748.1| - 1.5e-67 226.7 25.9 1.8e-67 226.5 17.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) NADH_oxidored PF08040.6 gi|435852162|ref|YP_007313748.1| - 7.3 6.2 11.5 0.6 9.7 0.7 2.9 2 1 1 3 3 3 0 MNLL subunit DUF1538 PF07556.6 gi|435852163|ref|YP_007313749.1| - 4.5e-65 218.6 27.0 5.2e-65 218.4 18.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) SecE PF00584.15 gi|435852163|ref|YP_007313749.1| - 0.15 11.6 0.1 0.15 11.6 0.1 4.2 4 1 1 5 5 5 0 SecE/Sec61-gamma subunits of protein translocation complex Usp PF00582.21 gi|435852164|ref|YP_007313750.1| - 3.9e-37 127.5 0.4 4.3e-37 127.4 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family B12-binding PF02310.14 gi|435852164|ref|YP_007313750.1| - 0.014 15.2 0.1 0.023 14.5 0.0 1.5 1 1 0 1 1 1 0 B12 binding domain DXP_reductoisom PF02670.11 gi|435852164|ref|YP_007313750.1| - 0.026 15.0 0.3 0.065 13.7 0.2 1.9 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase GARS_N PF02844.10 gi|435852164|ref|YP_007313750.1| - 0.053 13.9 0.1 0.15 12.5 0.0 1.6 1 1 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain Toprim_4 PF13662.1 gi|435852164|ref|YP_007313750.1| - 0.28 11.2 2.2 24 5.0 0.6 3.0 2 1 0 2 2 2 0 Toprim domain Na_H_Exchanger PF00999.16 gi|435852165|ref|YP_007313751.1| - 2.3e-77 260.1 52.2 3.1e-77 259.6 36.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|435852165|ref|YP_007313751.1| - 6.8e-24 84.1 0.3 1.7e-23 82.8 0.2 1.7 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|435852165|ref|YP_007313751.1| - 8.7e-17 60.4 0.1 3.5e-16 58.5 0.0 2.2 1 0 0 1 1 1 1 TrkA-C domain CPSase_L_chain PF00289.17 gi|435852165|ref|YP_007313751.1| - 0.054 13.6 0.1 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain DUF39 PF01837.11 gi|435852167|ref|YP_007313753.1| - 7.2e-107 356.9 0.0 8.3e-107 356.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_10 PF13237.1 gi|435852167|ref|YP_007313753.1| - 3.6e-07 29.8 7.1 9.9e-07 28.4 4.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435852167|ref|YP_007313753.1| - 7.8e-07 29.3 8.4 3.3e-06 27.3 6.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435852167|ref|YP_007313753.1| - 4e-06 26.1 8.9 0.0024 17.4 0.3 3.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435852167|ref|YP_007313753.1| - 2.6e-05 23.8 9.9 0.0013 18.4 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435852167|ref|YP_007313753.1| - 7.8e-05 22.8 10.0 0.0012 19.1 6.5 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435852167|ref|YP_007313753.1| - 9.4e-05 22.1 8.8 0.051 13.5 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435852167|ref|YP_007313753.1| - 9.7e-05 22.3 9.7 0.00031 20.6 6.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435852167|ref|YP_007313753.1| - 0.00014 21.6 6.7 0.00014 21.6 4.6 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|435852167|ref|YP_007313753.1| - 0.00071 19.4 3.3 0.0017 18.1 2.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435852167|ref|YP_007313753.1| - 0.01 16.1 12.2 4.7 7.6 2.6 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852167|ref|YP_007313753.1| - 0.019 15.5 8.3 0.53 10.8 0.1 3.6 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|435852167|ref|YP_007313753.1| - 0.073 13.4 11.4 1.2 9.6 0.2 3.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|435852167|ref|YP_007313753.1| - 0.11 13.1 7.9 3.7 8.3 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|435852167|ref|YP_007313753.1| - 0.32 11.4 11.0 0.22 11.9 0.6 2.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435852167|ref|YP_007313753.1| - 4.2 8.1 12.5 3.2 8.5 2.9 3.2 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435852167|ref|YP_007313753.1| - 4.9 7.7 12.8 1.8 9.1 1.2 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain tRNA-synt_1b PF00579.20 gi|435852169|ref|YP_007313755.1| - 1.6e-57 194.9 0.0 1.9e-57 194.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|435852169|ref|YP_007313755.1| - 0.0018 17.0 0.0 0.35 9.4 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) Msg2_C PF12373.3 gi|435852169|ref|YP_007313755.1| - 0.36 10.0 1.6 0.86 8.8 1.1 1.7 1 0 0 1 1 1 0 Major surface glycoprotein 2 C terminal Thg1C PF14413.1 gi|435852170|ref|YP_007313756.1| - 5.2e-28 97.1 0.1 7.4e-28 96.6 0.0 1.2 1 0 0 1 1 1 1 Thg1 C terminal domain Thg1 PF04446.7 gi|435852170|ref|YP_007313756.1| - 2.7e-27 95.0 0.0 3.9e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase PRC PF05239.11 gi|435852171|ref|YP_007313757.1| - 3.8e-12 45.8 2.4 5.1e-12 45.4 1.7 1.1 1 0 0 1 1 1 1 PRC-barrel domain Ldh_1_N PF00056.18 gi|435852172|ref|YP_007313758.1| - 5.7e-40 136.4 0.4 8e-40 135.9 0.3 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|435852172|ref|YP_007313758.1| - 7.5e-29 100.6 0.0 1.5e-28 99.7 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|435852172|ref|YP_007313758.1| - 6.1e-05 22.4 0.1 0.00016 21.0 0.0 1.7 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase 3Beta_HSD PF01073.14 gi|435852172|ref|YP_007313758.1| - 0.00044 19.0 0.0 0.00062 18.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family F420_oxidored PF03807.12 gi|435852172|ref|YP_007313758.1| - 0.0053 17.1 0.3 0.18 12.2 0.1 2.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|435852172|ref|YP_007313758.1| - 0.012 15.0 0.5 0.24 10.7 0.4 2.3 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|435852172|ref|YP_007313758.1| - 0.095 12.5 0.1 0.21 11.4 0.1 1.6 1 0 0 1 1 1 0 ThiF family RNase_H_2 PF13482.1 gi|435852173|ref|YP_007313759.1| - 2.1e-34 118.7 0.0 3e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|435852173|ref|YP_007313759.1| - 0.0019 17.7 0.0 0.79 9.2 0.0 2.2 2 0 0 2 2 2 2 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_exo1 PF03104.14 gi|435852173|ref|YP_007313759.1| - 0.087 11.6 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase family B, exonuclease domain TrkH PF02386.11 gi|435852174|ref|YP_007313760.1| - 3.5e-59 200.1 27.2 3.5e-59 200.1 18.9 2.2 1 1 1 2 2 2 1 Cation transport protein DUF2545 PF10810.3 gi|435852174|ref|YP_007313760.1| - 0.029 14.7 0.6 0.029 14.7 0.4 3.9 4 3 0 4 4 4 0 Protein of unknown function (DUF2545) UvrC_HhH_N PF08459.6 gi|435852175|ref|YP_007313761.1| - 1.6e-54 183.6 0.0 3.7e-54 182.4 0.0 1.6 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal GIY-YIG PF01541.19 gi|435852175|ref|YP_007313761.1| - 7.2e-11 42.3 0.1 7.2e-11 42.3 0.1 2.6 3 0 0 3 3 3 1 GIY-YIG catalytic domain HHH_2 PF12826.2 gi|435852175|ref|YP_007313761.1| - 1.1e-10 41.1 0.1 6e-10 38.8 0.0 2.3 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|435852175|ref|YP_007313761.1| - 1.5e-09 37.8 0.3 9.7e-09 35.2 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain UVR PF02151.14 gi|435852175|ref|YP_007313761.1| - 7.4e-09 34.8 5.7 1.9e-08 33.5 4.0 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif HHH_3 PF12836.2 gi|435852175|ref|YP_007313761.1| - 2.6e-05 24.0 0.3 0.00042 20.2 0.0 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH PF00633.18 gi|435852175|ref|YP_007313761.1| - 3e-05 23.4 0.2 0.0031 17.1 0.0 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif TFIIA_gamma_N PF02268.11 gi|435852175|ref|YP_007313761.1| - 0.00048 19.6 0.0 0.23 11.0 0.0 2.7 2 0 0 2 2 2 2 Transcription initiation factor IIA, gamma subunit, helical domain 5_3_exonuc PF01367.15 gi|435852175|ref|YP_007313761.1| - 0.032 14.4 0.1 0.032 14.4 0.1 2.6 3 0 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold GPI PF06560.6 gi|435852176|ref|YP_007313762.1| - 3.6e-58 195.5 2.0 4.7e-58 195.2 1.4 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|435852176|ref|YP_007313762.1| - 3.7e-05 23.1 0.5 9.1e-05 21.8 0.1 1.9 2 1 0 2 2 2 1 Cupin domain Cupin_1 PF00190.17 gi|435852176|ref|YP_007313762.1| - 0.00039 19.8 0.0 0.00063 19.1 0.0 1.3 1 0 0 1 1 1 1 Cupin ARD PF03079.9 gi|435852176|ref|YP_007313762.1| - 0.041 13.8 0.0 0.084 12.8 0.0 1.4 1 0 0 1 1 1 0 ARD/ARD' family DUF128 PF01995.11 gi|435852177|ref|YP_007313763.1| - 5.6e-91 303.6 1.8 6.3e-91 303.5 1.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 DHH PF01368.15 gi|435852178|ref|YP_007313764.1| - 1e-15 57.6 0.6 1.6e-15 57.0 0.4 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|435852178|ref|YP_007313764.1| - 1.2e-13 50.5 0.5 2.3e-13 49.6 0.4 1.5 1 0 0 1 1 1 1 DHHA1 domain CDC45 PF02724.9 gi|435852178|ref|YP_007313764.1| - 0.036 12.1 0.1 0.08 10.9 0.1 1.5 1 1 1 2 2 2 0 CDC45-like protein DUF3671 PF12420.3 gi|435852180|ref|YP_007313766.1| - 0.01 15.8 3.6 0.01 15.7 2.5 1.0 1 0 0 1 1 1 0 Protein of unknown function NMN_transporter PF04973.7 gi|435852180|ref|YP_007313766.1| - 0.042 13.3 0.3 0.051 13.0 0.2 1.0 1 0 0 1 1 1 0 Nicotinamide mononucleotide transporter DUF1516 PF07457.6 gi|435852180|ref|YP_007313766.1| - 0.044 13.8 2.0 0.052 13.6 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1516) TctB PF07331.6 gi|435852180|ref|YP_007313766.1| - 0.066 12.8 1.0 0.074 12.7 0.7 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Cytochrom_B_C PF00032.12 gi|435852180|ref|YP_007313766.1| - 0.074 13.2 1.9 0.081 13.1 1.3 1.0 1 0 0 1 1 1 0 Cytochrome b(C-terminal)/b6/petD OapA_N PF08525.6 gi|435852180|ref|YP_007313766.1| - 0.09 12.5 0.9 0.09 12.5 0.6 2.1 2 0 0 2 2 2 0 Opacity-associated protein A N-terminal motif Tmemb_cc2 PF10267.4 gi|435852180|ref|YP_007313766.1| - 0.43 9.1 1.5 0.43 9.1 1.0 1.0 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF3611 PF12263.3 gi|435852180|ref|YP_007313766.1| - 0.52 9.6 2.8 0.59 9.5 1.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3611) DUF975 PF06161.6 gi|435852180|ref|YP_007313766.1| - 0.57 9.8 5.6 0.66 9.6 3.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF975) Tetraspannin PF00335.15 gi|435852180|ref|YP_007313766.1| - 1.3 8.2 3.6 1.6 7.9 2.5 1.1 1 0 0 1 1 1 0 Tetraspanin family ATP-synt_8 PF00895.15 gi|435852180|ref|YP_007313766.1| - 1.7 8.9 6.4 0.44 10.7 0.8 2.0 2 0 0 2 2 2 0 ATP synthase protein 8 PepSY_TM PF03929.11 gi|435852180|ref|YP_007313766.1| - 2.8 8.5 8.7 1.7 9.1 2.3 2.1 2 0 0 2 2 2 0 PepSY-associated TM helix DUF1699 PF08004.6 gi|435852181|ref|YP_007313767.1| - 6.9e-63 210.0 0.8 7.7e-63 209.8 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF1699 PF08004.6 gi|435852182|ref|YP_007313768.1| - 2.5e-53 179.0 0.6 2.8e-53 178.9 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Aida_N PF08910.5 gi|435852182|ref|YP_007313768.1| - 0.1 12.8 0.2 0.89 9.8 0.0 2.0 1 1 1 2 2 2 0 Aida N-terminus Radical_SAM PF04055.16 gi|435852184|ref|YP_007313770.1| - 5.4e-16 59.1 0.0 1.3e-15 58.0 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|435852184|ref|YP_007313770.1| - 5.9e-09 35.8 0.2 1.8e-08 34.2 0.2 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|435852184|ref|YP_007313770.1| - 0.0027 17.7 0.1 0.007 16.4 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF1617 PF07761.7 gi|435852184|ref|YP_007313770.1| - 0.066 13.2 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1617) Acyl-CoA_dh_1 PF00441.19 gi|435852184|ref|YP_007313770.1| - 0.093 12.8 0.0 0.27 11.3 0.0 1.8 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain Acetyltransf_7 PF13508.1 gi|435852184|ref|YP_007313770.1| - 0.1 12.7 0.7 0.71 10.0 0.5 2.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_pol3_delta2 PF13177.1 gi|435852185|ref|YP_007313771.1| - 6e-15 55.2 0.0 8.8e-15 54.7 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|435852185|ref|YP_007313771.1| - 9.6e-10 38.3 0.0 5.6e-09 35.8 0.0 2.1 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.24 gi|435852185|ref|YP_007313771.1| - 1.7e-09 37.9 0.0 3.1e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|435852185|ref|YP_007313771.1| - 1.6e-07 30.5 0.1 0.0043 16.1 0.0 3.0 3 1 1 4 4 4 2 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|435852185|ref|YP_007313771.1| - 1.9e-05 24.5 0.1 9.6e-05 22.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.8 gi|435852185|ref|YP_007313771.1| - 0.0003 20.3 0.0 0.00056 19.4 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.1 gi|435852185|ref|YP_007313771.1| - 0.0016 18.5 0.0 0.0041 17.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|435852185|ref|YP_007313771.1| - 0.0037 16.0 0.0 0.005 15.5 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein TIP49 PF06068.8 gi|435852185|ref|YP_007313771.1| - 0.0053 15.5 0.0 0.052 12.2 0.0 2.2 1 1 0 2 2 2 1 TIP49 C-terminus AAA_17 PF13207.1 gi|435852185|ref|YP_007313771.1| - 0.016 16.0 0.0 0.05 14.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|435852185|ref|YP_007313771.1| - 0.052 13.2 0.0 0.097 12.3 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase RNA_helicase PF00910.17 gi|435852185|ref|YP_007313771.1| - 0.066 13.3 0.0 0.14 12.2 0.0 1.6 1 1 0 1 1 1 0 RNA helicase AAA_16 PF13191.1 gi|435852185|ref|YP_007313771.1| - 0.069 13.1 0.0 0.35 10.8 0.0 2.2 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|435852185|ref|YP_007313771.1| - 0.073 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|435852185|ref|YP_007313771.1| - 0.077 12.4 0.0 0.33 10.3 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein SecD_SecF PF02355.11 gi|435852186|ref|YP_007313772.1| - 4.7e-15 55.2 8.0 4.7e-15 55.2 5.6 2.0 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|435852186|ref|YP_007313772.1| - 0.00023 20.2 0.2 0.00066 18.7 0.1 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|435852186|ref|YP_007313772.1| - 0.00027 19.7 11.1 0.00027 19.7 7.7 2.1 2 0 0 2 2 2 1 MMPL family DUF3060 PF11259.3 gi|435852186|ref|YP_007313772.1| - 0.45 10.1 3.9 0.26 10.9 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3060) SecD_SecF PF02355.11 gi|435852187|ref|YP_007313773.1| - 1.7e-38 131.7 17.0 3e-38 130.9 11.8 1.4 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|435852187|ref|YP_007313773.1| - 3.7e-06 25.8 0.0 1.1e-05 24.3 0.0 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|435852187|ref|YP_007313773.1| - 0.012 13.5 12.9 0.018 13.0 8.9 1.1 1 0 0 1 1 1 0 Patched family dCMP_cyt_deam_1 PF00383.17 gi|435852188|ref|YP_007313774.1| - 1.2e-28 98.7 1.5 1.6e-28 98.3 1.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|435852188|ref|YP_007313774.1| - 3.9e-06 26.6 0.4 4.6e-06 26.3 0.3 1.1 1 0 0 1 1 1 1 APOBEC-like N-terminal domain MafB19-deam PF14437.1 gi|435852188|ref|YP_007313774.1| - 0.00097 18.7 1.6 0.0012 18.4 1.1 1.2 1 0 0 1 1 1 1 MafB19-like deaminase XOO_2897-deam PF14440.1 gi|435852188|ref|YP_007313774.1| - 0.0028 17.3 0.1 0.0031 17.2 0.1 1.2 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase Bd3614-deam PF14439.1 gi|435852188|ref|YP_007313774.1| - 0.0056 16.5 0.8 0.013 15.3 0.3 1.7 1 1 1 2 2 2 1 Bd3614-like deaminase CoA_binding_2 PF13380.1 gi|435852188|ref|YP_007313774.1| - 0.078 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain zf-C3HC4 PF00097.20 gi|435852188|ref|YP_007313774.1| - 0.12 12.0 5.1 0.49 10.0 3.5 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) F420_ligase PF01996.11 gi|435852189|ref|YP_007313775.1| - 1.4e-63 213.9 0.3 1.7e-63 213.7 0.2 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase HSP20 PF00011.16 gi|435852190|ref|YP_007313776.1| - 3.9e-23 81.2 2.8 4.7e-23 80.9 2.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|435852190|ref|YP_007313776.1| - 9.9e-05 22.8 0.3 0.0002 21.8 0.1 1.6 2 0 0 2 2 2 1 CS domain GvpH PF05455.6 gi|435852190|ref|YP_007313776.1| - 0.0074 15.9 0.2 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 GvpH PhosphMutase PF10143.4 gi|435852191|ref|YP_007313777.1| - 7.3e-57 191.7 0.0 1e-56 191.3 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|435852191|ref|YP_007313777.1| - 6.5e-46 156.7 0.2 7.3e-46 156.6 0.2 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|435852191|ref|YP_007313777.1| - 0.011 15.1 0.1 0.022 14.0 0.1 1.4 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase S-layer PF07752.6 gi|435852192|ref|YP_007313778.1| - 7.4e-12 45.0 11.9 3.3e-11 42.9 0.7 2.7 1 1 1 2 2 2 2 S-layer protein AA_kinase PF00696.23 gi|435852193|ref|YP_007313779.1| - 9.6e-50 169.3 1.2 1.1e-49 169.2 0.1 1.6 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|435852193|ref|YP_007313779.1| - 3.2e-22 77.8 7.0 1.1e-10 40.8 0.0 3.1 3 1 1 4 4 4 2 ACT domain ACT PF01842.20 gi|435852193|ref|YP_007313779.1| - 1.8e-20 72.0 5.1 8.4e-10 37.9 0.0 3.0 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.1 gi|435852193|ref|YP_007313779.1| - 0.49 10.1 3.1 2.2 8.0 0.1 2.8 3 0 0 3 3 3 0 ACT domain AIRS_C PF02769.17 gi|435852194|ref|YP_007313780.1| - 4.2e-17 62.5 0.0 7e-17 61.8 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|435852194|ref|YP_007313780.1| - 4.2e-16 58.9 0.5 8.2e-16 58.0 0.2 1.6 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain RRM_6 PF14259.1 gi|435852194|ref|YP_007313780.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) DUF1894 PF08979.6 gi|435852195|ref|YP_007313781.1| - 5.3e-29 100.1 0.1 5.7e-29 100.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) OrfB_IS605 PF01385.14 gi|435852196|ref|YP_007313782.1| - 7.5e-48 162.8 4.7 1.3e-47 162.1 3.2 1.3 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|435852196|ref|YP_007313782.1| - 4.5e-24 83.4 0.5 8e-23 79.5 1.2 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|435852196|ref|YP_007313782.1| - 8.8e-22 76.5 0.4 1.7e-21 75.6 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Phage_HK97_TLTM PF06120.6 gi|435852196|ref|YP_007313782.1| - 0.0011 18.3 0.2 0.0019 17.5 0.1 1.3 1 0 0 1 1 1 1 Tail length tape measure protein zf-piccolo PF05715.8 gi|435852196|ref|YP_007313782.1| - 0.043 13.8 1.6 0.093 12.7 1.1 1.5 1 0 0 1 1 1 0 Piccolo Zn-finger HypA PF01155.14 gi|435852196|ref|YP_007313782.1| - 0.13 11.9 0.1 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|435852196|ref|YP_007313782.1| - 0.14 11.9 1.1 0.3 10.9 0.8 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Borrelia_REV PF03978.8 gi|435852196|ref|YP_007313782.1| - 0.22 11.2 8.6 2.5 7.7 0.2 3.1 1 1 1 3 3 3 0 Borrelia burgdorferi REV protein Rep_fac-A_C PF08646.5 gi|435852196|ref|YP_007313782.1| - 1 9.0 10.7 0.46 10.1 0.1 3.4 2 1 2 4 4 4 0 Replication factor-A C terminal domain zf-RING_4 PF14570.1 gi|435852196|ref|YP_007313782.1| - 1.3 8.7 4.2 1.2 8.7 1.1 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain Rubredoxin PF00301.15 gi|435852196|ref|YP_007313782.1| - 4.1 7.3 7.9 1.1e+02 2.7 5.5 2.5 1 1 0 1 1 1 0 Rubredoxin zf-RanBP PF00641.13 gi|435852196|ref|YP_007313782.1| - 6.3 6.0 9.4 11 5.2 1.3 2.5 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others BPL_N PF09825.4 gi|435852197|ref|YP_007313783.1| - 0.00016 20.5 0.1 0.032 13.0 0.0 2.1 2 0 0 2 2 2 2 Biotin-protein ligase, N terminal DUF2194 PF09960.4 gi|435852197|ref|YP_007313783.1| - 0.016 13.2 0.0 0.02 12.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2194) ADH_zinc_N PF00107.21 gi|435852197|ref|YP_007313783.1| - 0.14 11.7 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase MtrH PF02007.13 gi|435852199|ref|YP_007313785.1| - 2.8e-135 450.0 1.4 3.2e-135 449.8 0.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrG PF04210.8 gi|435852200|ref|YP_007313786.1| - 2.3e-28 97.6 0.1 2.7e-28 97.4 0.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G MtrF PF09472.5 gi|435852201|ref|YP_007313787.1| - 6.3e-27 92.5 0.8 7.5e-27 92.3 0.6 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF389 PF04087.9 gi|435852201|ref|YP_007313787.1| - 0.016 15.1 1.5 0.03 14.2 1.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF389) DUF2570 PF10828.3 gi|435852201|ref|YP_007313787.1| - 0.22 11.1 0.6 1 8.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) MtrA PF04208.9 gi|435852202|ref|YP_007313788.1| - 2.4e-78 261.5 2.2 3e-78 261.2 1.6 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrB PF05440.7 gi|435852203|ref|YP_007313789.1| - 8.8e-36 121.8 0.1 1e-35 121.6 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrC PF04211.8 gi|435852204|ref|YP_007313790.1| - 1.9e-93 312.2 31.9 2.2e-93 312.0 22.1 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C DUF308 PF03729.8 gi|435852204|ref|YP_007313790.1| - 0.0018 18.2 5.9 0.0018 18.2 4.1 5.0 3 2 0 4 4 4 1 Short repeat of unknown function (DUF308) TRI9 PF08195.6 gi|435852204|ref|YP_007313790.1| - 0.15 11.7 2.1 0.36 10.5 1.5 1.6 1 0 0 1 1 1 0 TRI9 protein IncA PF04156.9 gi|435852204|ref|YP_007313790.1| - 0.58 9.7 0.0 0.58 9.7 0.0 4.3 3 1 2 5 5 5 0 IncA protein MtrD PF04207.7 gi|435852205|ref|YP_007313791.1| - 6.4e-99 329.8 28.0 8.3e-99 329.4 19.4 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D DUF3318 PF11780.3 gi|435852205|ref|YP_007313791.1| - 1.7 8.2 7.4 0.66 9.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3318) MtrE PF04206.7 gi|435852206|ref|YP_007313792.1| - 8.5e-128 425.0 9.8 9.7e-128 424.8 6.8 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E RabGAP-TBC PF00566.13 gi|435852206|ref|YP_007313792.1| - 0.16 11.3 0.4 0.4 10.1 0.0 1.7 2 0 0 2 2 2 0 Rab-GTPase-TBC domain AP_endonuc_2 PF01261.19 gi|435852207|ref|YP_007313793.1| - 6.5e-30 104.0 0.0 8.4e-30 103.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HMGL-like PF00682.14 gi|435852207|ref|YP_007313793.1| - 0.067 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 HMGL-like Usp PF00582.21 gi|435852208|ref|YP_007313794.1| - 7.1e-22 78.1 0.0 9.7e-22 77.6 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family Exotox-A_bind PF09101.5 gi|435852208|ref|YP_007313794.1| - 0.04 13.0 0.1 0.042 12.9 0.0 1.1 1 0 0 1 1 1 0 Exotoxin A binding SRP19 PF01922.12 gi|435852211|ref|YP_007313797.1| - 1.2e-28 99.5 0.2 1.4e-28 99.3 0.1 1.0 1 0 0 1 1 1 1 SRP19 protein Sec61_beta PF03911.11 gi|435852212|ref|YP_007313798.1| - 1.3e-08 34.4 0.3 1.8e-08 34.0 0.2 1.2 1 0 0 1 1 1 1 Sec61beta family IF-2B PF01008.12 gi|435852213|ref|YP_007313799.1| - 3.2e-83 278.9 0.0 3.8e-83 278.7 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family HD PF01966.17 gi|435852215|ref|YP_007313801.1| - 2.9e-12 46.6 2.1 3.3e-12 46.4 0.1 2.2 3 0 0 3 3 3 1 HD domain HDOD PF08668.7 gi|435852215|ref|YP_007313801.1| - 0.0025 17.1 0.1 0.0062 15.8 0.0 1.6 2 0 0 2 2 2 1 HDOD domain GCD14 PF08704.5 gi|435852216|ref|YP_007313802.1| - 6.1e-14 52.1 0.0 3.4e-12 46.3 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|435852216|ref|YP_007313802.1| - 1e-12 48.6 0.0 1.9e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435852216|ref|YP_007313802.1| - 1.4e-12 47.4 0.0 2.2e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435852216|ref|YP_007313802.1| - 3.9e-09 36.5 0.0 1e-08 35.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|435852216|ref|YP_007313802.1| - 1.6e-07 30.6 0.0 2e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|435852216|ref|YP_007313802.1| - 2.6e-07 31.0 0.0 5.9e-07 29.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|435852216|ref|YP_007313802.1| - 1.1e-06 28.0 0.1 1.4e-06 27.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|435852216|ref|YP_007313802.1| - 1.2e-06 28.0 0.1 1.8e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|435852216|ref|YP_007313802.1| - 6.9e-06 25.7 0.0 8.9e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|435852216|ref|YP_007313802.1| - 0.00013 22.3 0.0 0.00032 21.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435852216|ref|YP_007313802.1| - 0.00022 21.5 0.0 0.00039 20.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|435852216|ref|YP_007313802.1| - 0.00033 19.8 0.1 0.00046 19.3 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_30 PF05430.6 gi|435852216|ref|YP_007313802.1| - 0.0071 16.0 0.0 0.022 14.3 0.0 1.8 1 1 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_23 PF13489.1 gi|435852216|ref|YP_007313802.1| - 0.0091 15.7 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|435852216|ref|YP_007313802.1| - 0.032 13.6 0.1 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical protein 95 N6_N4_Mtase PF01555.13 gi|435852216|ref|YP_007313802.1| - 0.08 12.4 0.0 0.45 9.9 0.0 1.9 2 0 0 2 2 2 0 DNA methylase Methyltransf_3 PF01596.12 gi|435852216|ref|YP_007313802.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Rad51 PF08423.6 gi|435852217|ref|YP_007313803.1| - 4.4e-34 117.5 0.5 5e-34 117.3 0.4 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|435852217|ref|YP_007313803.1| - 2.2e-16 59.8 0.0 3.2e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|435852217|ref|YP_007313803.1| - 3.1e-12 46.1 2.0 5.7e-12 45.2 1.4 1.5 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|435852217|ref|YP_007313803.1| - 2.3e-08 33.7 0.1 2.8e-08 33.4 0.1 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) RecA PF00154.16 gi|435852217|ref|YP_007313803.1| - 6.9e-08 31.9 0.4 7.6e-08 31.7 0.3 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein SRP54 PF00448.17 gi|435852217|ref|YP_007313803.1| - 2.3e-07 30.4 0.0 3.3e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.4 gi|435852217|ref|YP_007313803.1| - 1.6e-06 26.9 0.2 2.2e-05 23.2 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.18 gi|435852217|ref|YP_007313803.1| - 2.3e-05 23.9 0.0 3e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.2 gi|435852217|ref|YP_007313803.1| - 4.1e-05 23.1 0.0 0.0075 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_30 PF13604.1 gi|435852217|ref|YP_007313803.1| - 0.00034 20.2 0.0 0.00054 19.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|435852217|ref|YP_007313803.1| - 0.00094 18.4 0.0 0.0023 17.1 0.0 1.6 2 0 0 2 2 2 1 PhoH-like protein MobB PF03205.9 gi|435852217|ref|YP_007313803.1| - 0.0011 18.7 0.1 0.0017 18.0 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.12 gi|435852217|ref|YP_007313803.1| - 0.0013 18.6 0.1 0.047 13.4 0.0 2.0 1 1 0 2 2 2 1 Domain of unknown function DUF87 PIF1 PF05970.9 gi|435852217|ref|YP_007313803.1| - 0.0036 16.2 0.0 0.0048 15.8 0.0 1.2 1 0 0 1 1 1 1 PIF1-like helicase AAA_22 PF13401.1 gi|435852217|ref|YP_007313803.1| - 0.0091 16.1 0.1 0.024 14.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|435852217|ref|YP_007313803.1| - 0.014 14.8 0.1 0.03 13.7 0.0 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein ArsA_ATPase PF02374.10 gi|435852217|ref|YP_007313803.1| - 0.015 14.3 0.2 0.037 13.0 0.1 1.7 1 1 1 2 2 2 0 Anion-transporting ATPase AAA_31 PF13614.1 gi|435852217|ref|YP_007313803.1| - 0.021 14.7 0.0 0.035 14.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|435852217|ref|YP_007313803.1| - 0.025 14.3 0.0 0.084 12.6 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain ABC_tran PF00005.22 gi|435852217|ref|YP_007313803.1| - 0.027 14.7 0.0 0.05 13.8 0.0 1.4 1 1 0 1 1 1 0 ABC transporter RVT_1 PF00078.22 gi|435852217|ref|YP_007313803.1| - 0.03 13.6 0.0 0.042 13.2 0.0 1.2 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) AAA_24 PF13479.1 gi|435852217|ref|YP_007313803.1| - 0.031 13.8 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|435852217|ref|YP_007313803.1| - 0.039 14.2 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MipZ PF09140.6 gi|435852217|ref|YP_007313803.1| - 0.054 12.5 0.0 0.073 12.1 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ ArgK PF03308.11 gi|435852217|ref|YP_007313803.1| - 0.058 12.1 0.0 0.095 11.4 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Arch_ATPase PF01637.13 gi|435852217|ref|YP_007313803.1| - 0.067 12.8 0.0 0.085 12.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase DnaB_C PF03796.10 gi|435852217|ref|YP_007313803.1| - 0.075 11.9 0.1 2.2 7.0 0.1 2.1 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain AAA PF00004.24 gi|435852217|ref|YP_007313803.1| - 0.08 13.1 0.1 0.13 12.4 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|435852217|ref|YP_007313803.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF2075 PF09848.4 gi|435852217|ref|YP_007313803.1| - 0.12 11.2 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DEAD PF00270.24 gi|435852217|ref|YP_007313803.1| - 0.13 11.7 0.1 0.36 10.3 0.1 1.7 1 1 0 1 1 1 0 DEAD/DEAH box helicase Glutaredoxin PF00462.19 gi|435852218|ref|YP_007313804.1| - 5.1e-09 36.0 0.1 6.8e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.9 gi|435852218|ref|YP_007313804.1| - 0.00015 21.9 0.0 0.00018 21.7 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N_3 PF13417.1 gi|435852218|ref|YP_007313804.1| - 0.0087 16.2 0.0 0.011 15.8 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.1 gi|435852218|ref|YP_007313804.1| - 0.022 14.5 0.2 0.031 14.0 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin domain Tox-PL-2 PF15643.1 gi|435852218|ref|YP_007313804.1| - 0.029 14.3 0.1 0.067 13.1 0.1 1.6 1 1 0 1 1 1 0 Papain fold toxin 2 Thioredoxin_2 PF13098.1 gi|435852218|ref|YP_007313804.1| - 0.098 12.8 0.3 0.13 12.4 0.2 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain NRDD PF13597.1 gi|435852219|ref|YP_007313805.1| - 9e-153 509.2 0.0 1.1e-152 508.9 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|435852219|ref|YP_007313805.1| - 0.0077 16.6 0.0 0.018 15.4 0.0 1.6 1 0 0 1 1 1 1 ATP cone domain Radical_SAM PF04055.16 gi|435852220|ref|YP_007313806.1| - 3.4e-17 63.1 0.0 5.2e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|435852220|ref|YP_007313806.1| - 2e-11 44.1 0.0 3.3e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|435852220|ref|YP_007313806.1| - 4.4e-09 36.3 0.0 8.8e-09 35.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4349 PF14257.1 gi|435852221|ref|YP_007313807.1| - 3.8e-69 232.8 2.3 4.5e-69 232.5 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) LOH1CR12 PF10158.4 gi|435852221|ref|YP_007313807.1| - 0.0061 16.3 0.4 0.056 13.2 0.0 2.1 1 1 1 2 2 2 1 Tumour suppressor protein Glycoprotein_B PF00606.13 gi|435852221|ref|YP_007313807.1| - 0.043 11.8 3.2 0.074 11.0 0.2 2.0 2 0 0 2 2 2 0 Herpesvirus Glycoprotein B DUF3316 PF11777.3 gi|435852221|ref|YP_007313807.1| - 0.084 12.6 4.2 0.54 10.0 0.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3316) AIRS PF00586.19 gi|435852222|ref|YP_007313808.1| - 3e-25 88.2 0.1 7e-25 87.1 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|435852222|ref|YP_007313808.1| - 3.1e-08 33.7 0.0 4.8e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain S-layer PF07752.6 gi|435852223|ref|YP_007313809.1| - 3.4e-155 514.7 38.4 4.9e-80 268.4 9.3 3.2 3 0 0 3 3 3 2 S-layer protein BiPBP_C PF06832.7 gi|435852223|ref|YP_007313809.1| - 1e-17 63.8 1.2 0.41 10.5 0.0 7.8 7 0 0 7 7 7 6 Penicillin-Binding Protein C-terminus Family PKD PF00801.15 gi|435852223|ref|YP_007313809.1| - 6.4e-11 41.8 59.4 0.0053 16.4 0.7 9.2 8 1 0 8 8 8 5 PKD domain PEGA PF08308.6 gi|435852223|ref|YP_007313809.1| - 6.8e-09 35.4 1.1 0.015 15.0 0.0 4.6 3 0 0 3 3 3 2 PEGA domain tRNA-synt_1c_C PF03950.13 gi|435852223|ref|YP_007313809.1| - 0.0001 22.0 0.4 0.54 9.9 0.0 3.0 2 1 0 2 2 2 2 tRNA synthetases class I (E and Q), anti-codon binding domain I-set PF07679.11 gi|435852223|ref|YP_007313809.1| - 0.00031 20.5 15.6 0.16 11.8 0.0 7.6 7 1 1 8 8 8 1 Immunoglobulin I-set domain PapC_N PF13954.1 gi|435852223|ref|YP_007313809.1| - 0.034 13.7 0.6 0.57 9.7 0.0 3.2 4 0 0 4 4 4 0 PapC N-terminal domain C1-set PF07654.10 gi|435852223|ref|YP_007313809.1| - 0.087 12.8 9.5 12 6.0 0.2 6.2 6 0 0 6 6 6 0 Immunoglobulin C1-set domain Tweety PF04906.8 gi|435852223|ref|YP_007313809.1| - 4 5.7 4.9 2.6 6.3 0.1 2.5 3 0 0 3 3 3 0 Tweety HTH_3 PF01381.17 gi|435852224|ref|YP_007313810.1| - 7.5e-08 32.1 0.1 1.7e-07 30.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|435852224|ref|YP_007313810.1| - 0.0005 20.2 0.0 0.0012 19.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|435852224|ref|YP_007313810.1| - 0.00064 19.7 0.1 0.0018 18.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|435852224|ref|YP_007313810.1| - 0.0028 17.8 0.1 0.0058 16.8 0.1 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain PrpR_N PF06506.6 gi|435852224|ref|YP_007313810.1| - 0.025 13.9 1.9 0.057 12.8 0.4 2.1 2 1 0 2 2 2 0 Propionate catabolism activator HTH_psq PF05225.11 gi|435852224|ref|YP_007313810.1| - 0.22 11.1 1.3 20 4.8 0.0 3.4 4 0 0 4 4 4 0 helix-turn-helix, Psq domain NMT1_2 PF13379.1 gi|435852225|ref|YP_007313811.1| - 6.3e-45 153.5 0.2 8.2e-45 153.1 0.1 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|435852225|ref|YP_007313811.1| - 6.3e-22 78.2 0.0 8.9e-22 77.7 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|435852225|ref|YP_007313811.1| - 2.6e-10 40.0 0.0 3.7e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|435852225|ref|YP_007313811.1| - 7.3e-05 22.1 0.0 0.00015 21.0 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 SBP_bac_7 PF03480.8 gi|435852225|ref|YP_007313811.1| - 0.0011 18.2 0.0 0.0032 16.6 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 LysR_substrate PF03466.15 gi|435852225|ref|YP_007313811.1| - 0.1 11.6 0.0 0.87 8.6 0.0 2.1 1 1 1 2 2 2 0 LysR substrate binding domain BPD_transp_1 PF00528.17 gi|435852226|ref|YP_007313812.1| - 1.4e-21 76.8 11.0 1.4e-21 76.8 7.6 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Phage_holin_1 PF04531.8 gi|435852226|ref|YP_007313812.1| - 1.8 8.6 4.8 2.1 8.4 0.0 3.0 2 1 1 3 3 3 0 Bacteriophage holin ABC_tran PF00005.22 gi|435852227|ref|YP_007313813.1| - 9e-35 119.9 0.0 1.4e-34 119.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435852227|ref|YP_007313813.1| - 1.3e-10 41.7 0.0 0.00016 21.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA PF00004.24 gi|435852227|ref|YP_007313813.1| - 5.5e-07 29.8 0.2 7.8e-06 26.1 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|435852227|ref|YP_007313813.1| - 1.5e-06 27.5 0.1 0.0035 16.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|435852227|ref|YP_007313813.1| - 8.7e-05 22.6 0.2 0.0011 19.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|435852227|ref|YP_007313813.1| - 0.00035 20.6 0.1 0.00096 19.1 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|435852227|ref|YP_007313813.1| - 0.00089 18.4 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|435852227|ref|YP_007313813.1| - 0.00095 19.9 0.3 0.0028 18.4 0.0 2.0 3 0 0 3 3 2 1 AAA domain AAA_23 PF13476.1 gi|435852227|ref|YP_007313813.1| - 0.0026 18.1 0.1 0.0035 17.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|435852227|ref|YP_007313813.1| - 0.0042 16.8 0.0 0.072 12.7 0.0 2.2 1 1 0 1 1 1 1 Archaeal ATPase AAA_28 PF13521.1 gi|435852227|ref|YP_007313813.1| - 0.0046 16.9 0.1 0.02 14.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|435852227|ref|YP_007313813.1| - 0.0055 15.4 0.0 0.0078 14.9 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_18 PF13238.1 gi|435852227|ref|YP_007313813.1| - 0.0073 16.6 0.8 0.018 15.3 0.5 2.1 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|435852227|ref|YP_007313813.1| - 0.0098 15.5 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.1 gi|435852227|ref|YP_007313813.1| - 0.011 15.5 0.1 0.035 13.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|435852227|ref|YP_007313813.1| - 0.013 14.9 0.0 0.094 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|435852227|ref|YP_007313813.1| - 0.02 14.1 0.0 3.9 6.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|435852227|ref|YP_007313813.1| - 0.023 14.4 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|435852227|ref|YP_007313813.1| - 0.024 14.3 0.0 0.068 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|435852227|ref|YP_007313813.1| - 0.029 13.8 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|435852227|ref|YP_007313813.1| - 0.032 13.7 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.17 gi|435852227|ref|YP_007313813.1| - 0.038 12.8 0.0 0.073 11.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain ABC_ATPase PF09818.4 gi|435852227|ref|YP_007313813.1| - 0.07 11.7 0.1 1.7 7.1 0.0 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|435852227|ref|YP_007313813.1| - 0.084 12.2 0.1 0.42 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|435852227|ref|YP_007313813.1| - 0.093 12.6 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|435852227|ref|YP_007313813.1| - 0.1 12.3 0.0 0.39 10.5 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain IstB_IS21 PF01695.12 gi|435852227|ref|YP_007313813.1| - 0.1 11.9 0.1 0.24 10.8 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|435852227|ref|YP_007313813.1| - 0.13 12.4 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ResIII PF04851.10 gi|435852227|ref|YP_007313813.1| - 0.13 12.0 0.0 0.38 10.5 0.0 1.9 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|435852227|ref|YP_007313813.1| - 0.14 11.3 0.0 0.25 10.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Bactofilin PF04519.8 gi|435852228|ref|YP_007313814.1| - 2.4e-05 24.2 0.1 7.7e-05 22.6 0.0 1.8 1 1 1 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|435852228|ref|YP_007313814.1| - 0.00059 19.2 2.2 0.0081 15.6 0.1 3.4 3 1 1 4 4 4 1 Bacterial transferase hexapeptide (six repeats) Prenyltrans_2 PF13249.1 gi|435852229|ref|YP_007313815.1| - 2e-12 47.5 1.2 1e-08 35.5 0.6 3.4 2 1 2 4 4 4 3 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|435852229|ref|YP_007313815.1| - 7.3e-12 45.2 1.8 1e-05 25.5 0.3 4.2 2 1 1 3 3 3 2 Prenyltransferase-like A2M_comp PF07678.9 gi|435852229|ref|YP_007313815.1| - 0.00094 18.4 0.0 0.58 9.3 0.0 3.0 2 1 1 3 3 3 2 A-macroglobulin complement component Prenyltrans PF00432.16 gi|435852229|ref|YP_007313815.1| - 0.046 13.2 4.3 1.1 8.8 0.1 3.8 4 0 0 4 4 4 0 Prenyltransferase and squalene oxidase repeat Pec_lyase PF09492.5 gi|435852229|ref|YP_007313815.1| - 0.093 11.8 0.1 1.1 8.4 0.0 2.2 1 1 1 2 2 2 0 Pectic acid lyase ParA PF10609.4 gi|435852230|ref|YP_007313816.1| - 4.3e-34 116.2 0.4 9.8e-34 115.0 0.3 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|435852230|ref|YP_007313816.1| - 3.4e-21 75.5 0.1 4.4e-21 75.1 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|435852230|ref|YP_007313816.1| - 4.1e-12 46.3 0.0 8.3e-09 35.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.10 gi|435852230|ref|YP_007313816.1| - 4.9e-09 35.6 0.7 7.1e-08 31.8 0.2 2.3 1 1 1 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|435852230|ref|YP_007313816.1| - 7.4e-08 31.7 0.0 1.1e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|435852230|ref|YP_007313816.1| - 8.6e-07 28.7 0.5 0.021 14.4 0.1 2.3 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.13 gi|435852230|ref|YP_007313816.1| - 3.7e-06 26.3 0.3 0.0011 18.2 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.15 gi|435852230|ref|YP_007313816.1| - 3.5e-05 23.4 0.0 5.1e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_25 PF13481.1 gi|435852230|ref|YP_007313816.1| - 9e-05 21.9 0.1 0.00015 21.2 0.1 1.5 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|435852230|ref|YP_007313816.1| - 0.00039 19.9 0.2 0.00091 18.7 0.2 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|435852230|ref|YP_007313816.1| - 0.0004 20.0 2.2 0.0014 18.3 0.1 2.4 2 1 0 2 2 2 1 Part of AAA domain DUF258 PF03193.11 gi|435852230|ref|YP_007313816.1| - 0.00082 18.5 0.1 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ArgK PF03308.11 gi|435852230|ref|YP_007313816.1| - 0.00092 18.0 0.1 0.0019 17.0 0.1 1.5 1 0 0 1 1 1 1 ArgK protein VirC1 PF07015.6 gi|435852230|ref|YP_007313816.1| - 0.0066 15.5 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein MobB PF03205.9 gi|435852230|ref|YP_007313816.1| - 0.0093 15.6 0.1 0.024 14.3 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|435852230|ref|YP_007313816.1| - 0.01 16.6 0.0 0.019 15.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|435852230|ref|YP_007313816.1| - 0.011 15.1 0.1 0.019 14.3 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain IstB_IS21 PF01695.12 gi|435852230|ref|YP_007313816.1| - 0.013 14.9 0.1 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF4182 PF13790.1 gi|435852230|ref|YP_007313816.1| - 0.02 14.7 0.1 0.037 13.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4182) NTPase_1 PF03266.10 gi|435852230|ref|YP_007313816.1| - 0.021 14.5 0.1 0.046 13.4 0.1 1.5 1 0 0 1 1 1 0 NTPase AAA_16 PF13191.1 gi|435852230|ref|YP_007313816.1| - 0.023 14.6 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|435852230|ref|YP_007313816.1| - 0.025 14.7 0.0 0.061 13.4 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|435852230|ref|YP_007313816.1| - 0.031 14.5 0.0 0.064 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|435852230|ref|YP_007313816.1| - 0.032 13.4 0.2 0.057 12.6 0.2 1.4 1 0 0 1 1 1 0 PhoH-like protein RNA_helicase PF00910.17 gi|435852230|ref|YP_007313816.1| - 0.035 14.2 0.0 0.098 12.8 0.0 1.9 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|435852230|ref|YP_007313816.1| - 0.048 12.5 0.1 0.074 11.8 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain MmgE_PrpD PF03972.9 gi|435852230|ref|YP_007313816.1| - 0.058 11.5 0.1 6.5 4.7 0.1 2.1 2 0 0 2 2 2 0 MmgE/PrpD family KTI12 PF08433.5 gi|435852230|ref|YP_007313816.1| - 0.072 12.2 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|435852230|ref|YP_007313816.1| - 0.077 12.5 0.7 0.16 11.5 0.2 1.7 2 0 0 2 2 2 0 AAA domain YhjQ PF06564.7 gi|435852230|ref|YP_007313816.1| - 0.12 11.7 0.2 2.9 7.1 0.1 2.1 2 0 0 2 2 2 0 YhjQ protein AAA_33 PF13671.1 gi|435852230|ref|YP_007313816.1| - 0.14 12.0 0.1 0.25 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|435852230|ref|YP_007313816.1| - 0.18 11.4 0.7 0.32 10.6 0.5 1.4 1 0 0 1 1 1 0 NACHT domain DUF134 PF02001.11 gi|435852231|ref|YP_007313817.1| - 1.9e-27 95.2 0.1 2.1e-27 95.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|435852231|ref|YP_007313817.1| - 0.00018 20.8 0.1 0.00026 20.4 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.6 gi|435852231|ref|YP_007313817.1| - 0.0012 18.6 0.3 0.0014 18.3 0.2 1.1 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.11 gi|435852231|ref|YP_007313817.1| - 0.0029 16.8 0.2 0.0052 16.0 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|435852231|ref|YP_007313817.1| - 0.0081 15.9 0.2 0.014 15.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|435852231|ref|YP_007313817.1| - 0.02 14.5 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.7 gi|435852231|ref|YP_007313817.1| - 0.021 14.3 0.0 0.076 12.6 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_28 PF13518.1 gi|435852231|ref|YP_007313817.1| - 0.026 14.5 0.0 0.053 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM PF04055.16 gi|435852232|ref|YP_007313818.1| - 4.6e-09 36.6 0.3 1.5e-08 34.9 0.1 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|435852232|ref|YP_007313818.1| - 0.045 13.7 0.0 0.091 12.7 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Lactamase_B PF00753.22 gi|435852233|ref|YP_007313819.1| - 1.6e-15 57.2 0.3 2e-15 56.9 0.2 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|435852233|ref|YP_007313819.1| - 4.1e-08 32.9 0.0 4.2e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|435852233|ref|YP_007313819.1| - 0.0027 17.4 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Humanin PF15040.1 gi|435852233|ref|YP_007313819.1| - 0.39 9.9 1.5 22 4.4 0.1 3.0 3 0 0 3 3 3 0 Humanin family Hydantoinase_A PF01968.13 gi|435852234|ref|YP_007313820.1| - 2.4e-77 259.9 0.9 1.2e-76 257.6 0.0 2.3 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|435852234|ref|YP_007313820.1| - 4.2e-37 127.3 0.1 2.1e-33 115.3 0.0 2.6 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|435852234|ref|YP_007313820.1| - 6.8e-07 27.9 1.4 0.0055 15.0 0.0 2.1 2 0 0 2 2 2 2 MutL protein NrfD_2 PF14589.1 gi|435852234|ref|YP_007313820.1| - 0.0043 16.7 0.0 0.0098 15.5 0.0 1.5 2 0 0 2 2 2 1 Polysulfide reductase BcrAD_BadFG PF01869.15 gi|435852234|ref|YP_007313820.1| - 1.1 8.4 3.4 13 4.9 2.5 2.6 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Nitro_FeMo-Co PF02579.12 gi|435852235|ref|YP_007313821.1| - 6.2e-23 80.7 0.0 7e-23 80.5 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF3680 PF12441.3 gi|435852235|ref|YP_007313821.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3680) Nitro_FeMo-Co PF02579.12 gi|435852236|ref|YP_007313822.1| - 6.5e-18 64.5 0.5 1.1e-17 63.8 0.0 1.6 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor Zip PF02535.17 gi|435852236|ref|YP_007313822.1| - 0.02 13.9 1.6 0.018 14.0 1.1 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter CbiA PF01656.18 gi|435852237|ref|YP_007313823.1| - 8.7e-30 103.5 0.0 1.1e-29 103.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|435852237|ref|YP_007313823.1| - 5.6e-12 44.7 15.1 8.2e-07 28.3 1.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435852237|ref|YP_007313823.1| - 4.3e-10 39.0 16.0 1.6e-05 24.5 1.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435852237|ref|YP_007313823.1| - 6.7e-07 29.4 11.7 0.0021 18.2 0.4 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435852237|ref|YP_007313823.1| - 3.2e-06 27.7 9.4 0.0038 17.9 1.4 2.8 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|435852237|ref|YP_007313823.1| - 9.1e-06 25.9 17.0 0.00075 19.8 0.9 3.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435852237|ref|YP_007313823.1| - 1.3e-05 24.9 20.1 6.6e-05 22.6 7.3 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435852237|ref|YP_007313823.1| - 1.9e-05 24.9 20.1 0.0065 16.9 4.8 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain AAA_31 PF13614.1 gi|435852237|ref|YP_007313823.1| - 7.2e-05 22.7 0.0 0.00052 19.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain Fer4_21 PF14697.1 gi|435852237|ref|YP_007313823.1| - 9e-05 22.2 6.4 9e-05 22.2 4.4 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain ParA PF10609.4 gi|435852237|ref|YP_007313823.1| - 0.00023 20.9 0.2 0.00057 19.7 0.1 1.8 1 1 0 1 1 1 1 ParA/MinD ATPase like Fer4_4 PF12800.2 gi|435852237|ref|YP_007313823.1| - 0.00026 21.0 18.7 0.014 15.6 2.4 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435852237|ref|YP_007313823.1| - 0.00039 20.1 16.7 0.013 15.4 0.6 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain AAA_26 PF13500.1 gi|435852237|ref|YP_007313823.1| - 0.00071 19.2 1.6 0.016 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain Fer4_17 PF13534.1 gi|435852237|ref|YP_007313823.1| - 0.001 19.3 6.5 0.021 15.1 0.7 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_NifH PF00142.13 gi|435852237|ref|YP_007313823.1| - 0.0015 17.7 0.1 1.2 8.3 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|435852237|ref|YP_007313823.1| - 0.0031 16.6 0.5 0.0055 15.7 0.3 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|435852237|ref|YP_007313823.1| - 0.0039 16.3 0.0 0.0059 15.7 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_19 PF13245.1 gi|435852237|ref|YP_007313823.1| - 0.014 15.0 0.3 0.52 10.0 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain Fer4_18 PF13746.1 gi|435852237|ref|YP_007313823.1| - 0.015 15.6 8.0 0.22 11.9 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435852237|ref|YP_007313823.1| - 0.017 15.1 14.4 0.13 12.3 1.6 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852237|ref|YP_007313823.1| - 0.026 15.0 6.1 1.1 9.8 0.4 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|435852237|ref|YP_007313823.1| - 0.061 13.2 6.0 0.19 11.6 3.7 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_17 PF13207.1 gi|435852237|ref|YP_007313823.1| - 0.064 14.0 0.0 0.21 12.4 0.0 1.9 2 1 1 3 3 2 0 AAA domain AAA_25 PF13481.1 gi|435852237|ref|YP_007313823.1| - 0.076 12.4 0.1 0.16 11.3 0.0 1.5 2 0 0 2 2 1 0 AAA domain Fer4_13 PF13370.1 gi|435852237|ref|YP_007313823.1| - 6.8 7.1 9.4 1.5 9.2 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain CbiA PF01656.18 gi|435852238|ref|YP_007313824.1| - 7.6e-32 110.3 0.2 8.6e-32 110.1 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|435852238|ref|YP_007313824.1| - 8.7e-14 50.4 12.5 1.6e-07 30.6 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435852238|ref|YP_007313824.1| - 1.2e-10 41.6 3.6 0.0003 21.1 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435852238|ref|YP_007313824.1| - 3e-08 33.1 12.1 0.00033 20.3 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_NifH PF00142.13 gi|435852238|ref|YP_007313824.1| - 8.6e-08 31.6 3.7 0.0037 16.4 0.7 2.5 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_19 PF13245.1 gi|435852238|ref|YP_007313824.1| - 1e-07 31.5 0.2 0.0014 18.3 0.0 2.3 2 0 0 2 2 2 2 Part of AAA domain Fer4_16 PF13484.1 gi|435852238|ref|YP_007313824.1| - 2.7e-07 31.2 6.8 0.0021 18.7 0.1 2.7 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|435852238|ref|YP_007313824.1| - 2e-06 27.5 12.1 1.9e-05 24.4 8.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435852238|ref|YP_007313824.1| - 8.4e-06 25.4 20.7 0.00022 20.9 8.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435852238|ref|YP_007313824.1| - 1.2e-05 25.1 1.9 0.06 13.3 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852238|ref|YP_007313824.1| - 1.3e-05 25.6 7.7 0.015 15.8 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|435852238|ref|YP_007313824.1| - 2.1e-05 24.1 13.3 0.0059 16.4 1.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain ParA PF10609.4 gi|435852238|ref|YP_007313824.1| - 2.3e-05 24.1 0.1 6.7e-05 22.6 0.1 1.9 1 0 0 1 1 1 1 ParA/MinD ATPase like Fer4_9 PF13187.1 gi|435852238|ref|YP_007313824.1| - 6.7e-05 23.0 9.9 0.0037 17.4 7.6 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain ArsA_ATPase PF02374.10 gi|435852238|ref|YP_007313824.1| - 7.5e-05 21.9 3.3 0.0051 15.9 0.4 2.9 3 0 0 3 3 3 1 Anion-transporting ATPase AAA_22 PF13401.1 gi|435852238|ref|YP_007313824.1| - 0.00011 22.3 0.0 0.0027 17.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|435852238|ref|YP_007313824.1| - 0.0002 20.6 0.4 0.25 10.5 0.4 2.2 2 0 0 2 2 2 2 PhoH-like protein AAA_24 PF13479.1 gi|435852238|ref|YP_007313824.1| - 0.002 17.7 0.2 0.034 13.7 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|435852238|ref|YP_007313824.1| - 0.0039 16.6 0.2 0.054 12.8 0.1 2.3 2 0 0 2 2 2 1 AAA domain FTHFS PF01268.14 gi|435852238|ref|YP_007313824.1| - 0.004 15.1 0.1 0.0067 14.4 0.1 1.3 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase Fer4_17 PF13534.1 gi|435852238|ref|YP_007313824.1| - 0.0048 17.2 10.2 0.25 11.7 0.5 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain AAA_30 PF13604.1 gi|435852238|ref|YP_007313824.1| - 0.0084 15.7 0.2 0.41 10.1 0.0 2.7 2 1 1 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|435852238|ref|YP_007313824.1| - 0.0088 16.3 0.1 0.39 11.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|435852238|ref|YP_007313824.1| - 0.0097 14.9 0.4 1.6 7.6 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|435852238|ref|YP_007313824.1| - 0.01 15.8 0.0 0.084 12.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|435852238|ref|YP_007313824.1| - 0.011 16.5 4.3 0.3 11.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|435852238|ref|YP_007313824.1| - 0.011 14.6 0.4 0.79 8.5 0.2 2.2 2 0 0 2 2 2 0 NB-ARC domain Fer4_4 PF12800.2 gi|435852238|ref|YP_007313824.1| - 0.011 16.0 12.1 0.16 12.3 1.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|435852238|ref|YP_007313824.1| - 0.012 16.1 16.5 0.2 12.3 3.5 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain ABC_tran PF00005.22 gi|435852238|ref|YP_007313824.1| - 0.014 15.7 0.0 0.11 12.7 0.0 2.2 2 0 0 2 2 2 0 ABC transporter AAA_29 PF13555.1 gi|435852238|ref|YP_007313824.1| - 0.018 14.5 0.3 0.054 13.0 0.4 1.7 2 0 0 2 2 1 0 P-loop containing region of AAA domain GTP_EFTU PF00009.22 gi|435852238|ref|YP_007313824.1| - 0.021 14.2 1.0 0.35 10.2 0.1 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_13 PF13166.1 gi|435852238|ref|YP_007313824.1| - 0.022 13.2 0.0 0.027 12.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|435852238|ref|YP_007313824.1| - 0.027 13.3 0.2 0.083 11.7 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein Fer4_13 PF13370.1 gi|435852238|ref|YP_007313824.1| - 0.029 14.7 11.7 0.81 10.1 0.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain AAA_31 PF13614.1 gi|435852238|ref|YP_007313824.1| - 0.029 14.2 0.1 0.24 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|435852238|ref|YP_007313824.1| - 0.032 13.6 0.3 1.8 7.9 0.2 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein KaiC PF06745.8 gi|435852238|ref|YP_007313824.1| - 0.042 12.9 0.5 0.2 10.7 0.2 2.1 2 0 0 2 2 2 0 KaiC AAA PF00004.24 gi|435852238|ref|YP_007313824.1| - 0.055 13.6 0.8 1.7 8.8 0.0 2.6 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|435852238|ref|YP_007313824.1| - 0.059 12.9 0.0 3.9 6.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|435852238|ref|YP_007313824.1| - 0.071 13.4 0.9 0.14 12.4 0.6 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|435852238|ref|YP_007313824.1| - 0.076 12.4 0.1 1.6 8.1 0.2 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RuvB_N PF05496.7 gi|435852238|ref|YP_007313824.1| - 0.079 11.9 0.2 1.2 8.1 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_28 PF13521.1 gi|435852238|ref|YP_007313824.1| - 0.95 9.4 3.5 0.3 11.0 0.3 1.7 2 0 0 2 2 1 0 AAA domain Spore_coat_CotO PF14153.1 gi|435852239|ref|YP_007313825.1| - 0.014 14.8 0.0 0.018 14.4 0.0 1.1 1 0 0 1 1 1 0 Spore coat protein CotO N_methyl_3 PF13633.1 gi|435852240|ref|YP_007313826.1| - 3.8 7.6 7.3 1.9 8.5 3.5 1.7 2 0 0 2 2 2 0 Prokaryotic N-terminal methylation site DUF3894 PF13033.1 gi|435852241|ref|YP_007313827.1| - 0.025 14.6 2.6 0.057 13.4 1.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3894) Rhodanese PF00581.15 gi|435852242|ref|YP_007313828.1| - 3.9e-29 101.2 0.0 8.4e-18 64.7 0.0 2.7 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|435852242|ref|YP_007313828.1| - 1.9e-16 60.2 0.6 3.7e-16 59.3 0.4 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|435852242|ref|YP_007313828.1| - 0.0055 16.2 0.0 0.2 11.2 0.1 2.4 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Fe_dep_repress PF01325.14 gi|435852243|ref|YP_007313829.1| - 4.3e-13 48.9 0.1 6.5e-13 48.4 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|435852243|ref|YP_007313829.1| - 2.6e-12 46.2 0.1 4.5e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|435852243|ref|YP_007313829.1| - 2.9e-07 30.0 0.0 6.2e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|435852243|ref|YP_007313829.1| - 0.00015 21.3 0.0 0.0003 20.4 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|435852243|ref|YP_007313829.1| - 0.00024 20.7 0.1 0.00055 19.5 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|435852243|ref|YP_007313829.1| - 0.0012 18.4 0.0 0.0033 17.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|435852243|ref|YP_007313829.1| - 0.0022 17.5 0.1 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.15 gi|435852243|ref|YP_007313829.1| - 0.0029 17.6 0.0 0.0056 16.7 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator HTH_27 PF13463.1 gi|435852243|ref|YP_007313829.1| - 0.0041 17.4 0.1 0.0062 16.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|435852243|ref|YP_007313829.1| - 0.0075 15.8 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|435852243|ref|YP_007313829.1| - 0.014 15.2 0.0 0.045 13.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Topoisom_bac PF01131.15 gi|435852243|ref|YP_007313829.1| - 0.016 14.0 0.0 0.02 13.7 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase FeoC PF09012.5 gi|435852243|ref|YP_007313829.1| - 0.021 14.5 0.0 0.05 13.3 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_45 PF14947.1 gi|435852243|ref|YP_007313829.1| - 0.026 14.3 0.0 0.065 13.0 0.0 1.7 1 1 1 2 2 2 0 Winged helix-turn-helix HTH_24 PF13412.1 gi|435852243|ref|YP_007313829.1| - 0.065 12.6 0.0 0.24 10.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|435852243|ref|YP_007313829.1| - 0.087 12.3 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit TroA PF01297.12 gi|435852244|ref|YP_007313830.1| - 4.8e-74 248.8 0.9 5.6e-74 248.6 0.6 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family DUF4223 PF13978.1 gi|435852244|ref|YP_007313830.1| - 0.0012 18.5 0.4 0.0033 17.1 0.3 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF4223) VWA_2 PF13519.1 gi|435852244|ref|YP_007313830.1| - 0.0086 16.2 0.5 0.048 13.7 0.1 2.2 2 1 0 3 3 3 1 von Willebrand factor type A domain N_NLPC_P60 PF12912.2 gi|435852244|ref|YP_007313830.1| - 0.028 14.4 0.2 0.099 12.7 0.0 1.9 2 0 0 2 2 2 0 NLPC_P60 stabilising domain, N term CoA_binding_2 PF13380.1 gi|435852244|ref|YP_007313830.1| - 0.051 13.7 0.1 3.4 7.8 0.0 2.5 2 0 0 2 2 2 0 CoA binding domain SurA_N_2 PF13623.1 gi|435852244|ref|YP_007313830.1| - 0.051 13.5 0.7 0.41 10.6 0.0 2.3 2 0 0 2 2 2 0 SurA N-terminal domain Isochorismatase PF00857.15 gi|435852244|ref|YP_007313830.1| - 0.094 12.6 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Isochorismatase family ABC_tran PF00005.22 gi|435852245|ref|YP_007313831.1| - 5.7e-31 107.6 0.0 8.7e-31 107.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435852245|ref|YP_007313831.1| - 2.9e-16 60.2 2.1 6.6e-09 36.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|435852245|ref|YP_007313831.1| - 1.3e-06 27.7 1.0 6e-06 25.6 0.7 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|435852245|ref|YP_007313831.1| - 1.2e-05 24.5 0.2 0.03 13.3 0.1 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|435852245|ref|YP_007313831.1| - 0.00049 19.5 0.1 0.00084 18.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|435852245|ref|YP_007313831.1| - 0.0016 18.8 1.0 0.0028 18.0 0.7 1.6 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|435852245|ref|YP_007313831.1| - 0.028 13.8 1.4 0.29 10.5 0.2 2.1 2 0 0 2 2 2 0 AAA-like domain T2SE PF00437.15 gi|435852245|ref|YP_007313831.1| - 0.029 13.2 0.0 0.054 12.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|435852245|ref|YP_007313831.1| - 0.085 12.4 0.0 0.57 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|435852245|ref|YP_007313831.1| - 0.085 12.8 1.0 0.31 11.0 0.7 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase MutS_V PF00488.16 gi|435852245|ref|YP_007313831.1| - 0.11 11.9 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 MutS domain V AAA_22 PF13401.1 gi|435852245|ref|YP_007313831.1| - 0.11 12.6 0.4 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|435852245|ref|YP_007313831.1| - 0.25 12.1 1.4 0.81 10.5 1.0 2.0 1 1 0 1 1 1 0 AAA domain ABC-3 PF00950.12 gi|435852246|ref|YP_007313832.1| - 1.1e-84 283.7 31.0 1.2e-84 283.6 21.5 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|435852246|ref|YP_007313832.1| - 5.9e-13 48.3 29.7 1.1e-12 47.4 20.6 1.4 1 1 0 1 1 1 1 FecCD transport family DUF2427 PF10348.4 gi|435852246|ref|YP_007313832.1| - 0.022 14.3 0.1 0.022 14.3 0.1 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF2427) Multi_Drug_Res PF00893.14 gi|435852247|ref|YP_007313833.1| - 1.8e-29 102.0 10.4 2.4e-29 101.6 7.2 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.15 gi|435852247|ref|YP_007313833.1| - 2e-06 27.8 12.2 2.2e-06 27.7 8.4 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|435852247|ref|YP_007313833.1| - 0.00056 20.0 10.6 0.00088 19.4 7.4 1.4 1 1 0 1 1 1 1 Multidrug resistance efflux transporter DUF2523 PF10734.4 gi|435852247|ref|YP_007313833.1| - 0.045 13.9 1.1 0.045 13.9 0.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2523) SCRG1 PF15224.1 gi|435852247|ref|YP_007313833.1| - 0.078 12.8 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Scrapie-responsive protein 1 UPF0546 PF10639.4 gi|435852247|ref|YP_007313833.1| - 0.091 12.5 3.0 0.11 12.2 2.0 1.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0546 YtpI PF14007.1 gi|435852247|ref|YP_007313833.1| - 0.15 12.0 7.0 0.22 11.4 4.9 1.3 1 0 0 1 1 1 0 YtpI-like protein TPT PF03151.11 gi|435852247|ref|YP_007313833.1| - 0.57 9.8 9.0 0.85 9.2 5.8 1.6 1 1 0 1 1 1 0 Triose-phosphate Transporter family DUF1049 PF06305.6 gi|435852247|ref|YP_007313833.1| - 6.5 6.3 6.7 1.2 8.6 0.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) DUF2207 PF09972.4 gi|435852248|ref|YP_007313834.1| - 5.9e-110 368.2 2.8 6.9e-110 368.0 1.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) DUF4097 PF13349.1 gi|435852248|ref|YP_007313834.1| - 0.056 12.9 0.0 0.19 11.2 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) LemA PF04011.7 gi|435852249|ref|YP_007313835.1| - 4.6e-66 221.4 6.9 5.2e-66 221.3 4.8 1.0 1 0 0 1 1 1 1 LemA family DUF327 PF03885.8 gi|435852249|ref|YP_007313835.1| - 0.016 15.0 2.8 0.021 14.6 1.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF327) SLAC1 PF03595.12 gi|435852249|ref|YP_007313835.1| - 0.051 12.2 2.1 0.072 11.7 1.5 1.2 1 0 0 1 1 1 0 Voltage-dependent anion channel Colicin_immun PF09204.5 gi|435852249|ref|YP_007313835.1| - 0.054 13.5 0.4 0.42 10.7 0.0 2.1 1 1 1 2 2 2 0 Bacterial self-protective colicin-like immunity DUF3906 PF13046.1 gi|435852249|ref|YP_007313835.1| - 0.057 13.0 0.0 0.17 11.5 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3906) Adeno_E3_14_5 PF04834.7 gi|435852249|ref|YP_007313835.1| - 0.11 12.9 0.4 0.29 11.5 0.3 1.7 1 0 0 1 1 1 0 Early E3 14.5 kDa protein Chordopox_A13L PF05961.6 gi|435852249|ref|YP_007313835.1| - 0.16 11.9 1.3 0.41 10.6 0.9 1.8 1 0 0 1 1 1 0 Chordopoxvirus A13L protein DUF2408 PF10303.4 gi|435852249|ref|YP_007313835.1| - 0.18 11.8 1.8 1.1 9.3 1.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DUF4446 PF14584.1 gi|435852249|ref|YP_007313835.1| - 0.24 11.2 4.0 0.37 10.6 0.3 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF4446) TMEM138 PF14935.1 gi|435852249|ref|YP_007313835.1| - 0.53 10.6 3.6 2.2 8.6 1.4 2.1 2 0 0 2 2 2 0 Transmembrane protein 138 IncA PF04156.9 gi|435852249|ref|YP_007313835.1| - 0.74 9.3 3.4 4.7 6.7 0.1 2.2 2 0 0 2 2 2 0 IncA protein MFS_1 PF07690.11 gi|435852250|ref|YP_007313836.1| - 3.8e-16 58.7 60.0 1.5e-11 43.5 33.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|435852250|ref|YP_007313836.1| - 3.1e-09 35.9 40.1 9.6e-08 31.0 9.8 3.3 1 1 1 3 3 3 3 Sugar (and other) transporter MazG-like PF12643.2 gi|435852251|ref|YP_007313837.1| - 0.018 14.9 0.0 0.025 14.4 0.0 1.2 1 0 0 1 1 1 0 MazG-like family MazG PF03819.12 gi|435852251|ref|YP_007313837.1| - 0.051 13.5 1.2 0.33 10.9 0.8 2.0 1 1 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain PsiE PF06146.7 gi|435852252|ref|YP_007313838.1| - 1.7e-09 37.7 6.0 1.7e-09 37.7 4.2 1.6 2 0 0 2 2 2 1 Phosphate-starvation-inducible E DUF4044 PF13253.1 gi|435852252|ref|YP_007313838.1| - 0.25 10.5 4.5 0.77 8.9 3.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) 5_nucleotid_C PF02872.13 gi|435852253|ref|YP_007313839.1| - 0.11 12.4 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 5'-nucleotidase, C-terminal domain EamA PF00892.15 gi|435852254|ref|YP_007313840.1| - 4.2e-25 88.2 39.5 1.1e-12 48.1 12.2 2.5 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|435852254|ref|YP_007313840.1| - 2.7e-07 30.7 9.6 2.7e-07 30.7 6.7 3.0 3 1 0 3 3 3 1 Multidrug resistance efflux transporter DUF1029 PF06269.7 gi|435852254|ref|YP_007313840.1| - 0.12 12.4 5.1 2.6 8.1 2.4 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1029) Ninjurin PF04923.7 gi|435852254|ref|YP_007313840.1| - 6.4 6.5 8.1 3.2 7.5 2.2 2.4 2 0 0 2 2 2 0 Ninjurin FYVE PF01363.16 gi|435852255|ref|YP_007313841.1| - 0.016 15.0 6.5 0.022 14.6 1.9 2.1 2 0 0 2 2 2 0 FYVE zinc finger UPF0547 PF10571.4 gi|435852255|ref|YP_007313841.1| - 0.019 14.6 0.7 0.15 11.7 0.5 2.3 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|435852255|ref|YP_007313841.1| - 0.033 13.8 6.4 1 9.0 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|435852255|ref|YP_007313841.1| - 0.085 12.0 1.9 7.4 5.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain COP23 PF14218.1 gi|435852255|ref|YP_007313841.1| - 0.14 11.7 1.3 0.32 10.5 0.8 1.7 1 1 0 1 1 1 0 Circadian oscillating protein COP23 DUF2321 PF10083.4 gi|435852255|ref|YP_007313841.1| - 0.23 10.9 2.4 0.25 10.8 1.7 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) zinc_ribbon_5 PF13719.1 gi|435852255|ref|YP_007313841.1| - 0.25 10.9 9.1 2 8.0 1.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|435852255|ref|YP_007313841.1| - 0.42 10.6 2.9 5.2 7.1 0.0 2.5 2 1 0 2 2 2 0 zinc-finger DUF2296 PF10058.4 gi|435852255|ref|YP_007313841.1| - 0.75 9.5 5.5 9.2 6.0 0.7 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DZR PF12773.2 gi|435852255|ref|YP_007313841.1| - 0.94 9.3 8.8 3.9 7.3 6.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|435852255|ref|YP_007313841.1| - 1.1 9.1 0.2 1.1 9.1 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DNA_RNApol_7kD PF03604.8 gi|435852255|ref|YP_007313841.1| - 1.5 8.3 5.0 10 5.6 0.1 3.2 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DiS_P_DiS PF06750.8 gi|435852255|ref|YP_007313841.1| - 2.2 8.1 4.8 4.5 7.1 0.8 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Gin PF10764.4 gi|435852255|ref|YP_007313841.1| - 3 7.6 7.2 0.97 9.1 0.2 2.5 2 1 0 2 2 2 0 Inhibitor of sigma-G Gin zf-C2H2 PF00096.21 gi|435852255|ref|YP_007313841.1| - 5.5 7.5 8.8 4.4 7.8 3.6 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2196 PF09962.4 gi|435852256|ref|YP_007313842.1| - 4.7e-29 99.9 5.1 5.2e-29 99.8 3.6 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) LigB PF02900.13 gi|435852257|ref|YP_007313843.1| - 3.6e-53 180.3 0.0 4.1e-53 180.1 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase TPR_11 PF13414.1 gi|435852258|ref|YP_007313844.1| - 6.6e-10 38.4 10.3 0.00036 20.1 3.1 3.9 1 1 3 4 4 4 4 TPR repeat TPR_12 PF13424.1 gi|435852258|ref|YP_007313844.1| - 2.6e-08 33.6 8.6 3e-05 23.8 1.4 4.1 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|435852258|ref|YP_007313844.1| - 8.4e-06 25.3 16.9 0.046 13.6 0.6 5.3 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|435852258|ref|YP_007313844.1| - 8.5e-05 22.0 18.5 1.4 8.6 0.1 6.2 4 2 0 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|435852258|ref|YP_007313844.1| - 0.00061 20.3 8.8 0.34 11.6 0.7 3.8 1 1 3 4 4 4 3 Tetratricopeptide repeat SNAP PF14938.1 gi|435852258|ref|YP_007313844.1| - 0.00085 18.5 8.6 0.013 14.6 6.1 2.4 1 1 1 2 2 2 2 Soluble NSF attachment protein, SNAP TOM20_plant PF06552.7 gi|435852258|ref|YP_007313844.1| - 0.0015 18.1 1.3 0.005 16.4 0.9 1.9 1 0 0 1 1 1 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_14 PF13428.1 gi|435852258|ref|YP_007313844.1| - 0.0017 18.7 5.9 0.84 10.4 0.2 4.2 2 2 2 4 4 4 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|435852258|ref|YP_007313844.1| - 0.0018 17.9 5.6 4 7.4 0.1 4.7 4 1 0 4 4 4 1 Tetratricopeptide repeat DUF3369 PF11849.3 gi|435852258|ref|YP_007313844.1| - 0.0032 17.4 0.4 2.1 8.2 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF3369) TPR_8 PF13181.1 gi|435852258|ref|YP_007313844.1| - 0.0056 16.3 14.3 0.31 10.9 0.1 5.4 5 1 0 5 5 5 2 Tetratricopeptide repeat PPR PF01535.15 gi|435852258|ref|YP_007313844.1| - 0.065 13.2 0.4 1.1 9.3 0.0 3.3 3 0 0 3 3 3 0 PPR repeat MIT PF04212.13 gi|435852258|ref|YP_007313844.1| - 0.12 12.2 13.3 3.6 7.5 1.0 4.2 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain DUF2225 PF09986.4 gi|435852258|ref|YP_007313844.1| - 0.44 9.9 6.6 4.7 6.6 1.6 2.6 1 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) Lactamase_B PF00753.22 gi|435852259|ref|YP_007313845.1| - 6.4e-10 38.9 0.5 2.6e-09 37.0 0.1 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|435852259|ref|YP_007313845.1| - 0.011 15.3 0.0 0.02 14.4 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain MMR_HSR1 PF01926.18 gi|435852260|ref|YP_007313846.1| - 5.2e-15 55.4 0.8 2.4e-11 43.5 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|435852260|ref|YP_007313846.1| - 9.6e-09 34.6 2.3 0.002 17.4 0.1 2.5 2 1 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|435852260|ref|YP_007313846.1| - 1.5e-06 27.8 1.7 0.00073 19.0 0.2 2.4 1 1 0 2 2 2 2 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|435852260|ref|YP_007313846.1| - 1.6e-05 24.1 0.0 3.2e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.18 gi|435852260|ref|YP_007313846.1| - 0.00023 21.0 1.8 0.8 9.4 0.2 3.2 2 1 1 3 3 3 1 Dynamin family DUF258 PF03193.11 gi|435852260|ref|YP_007313846.1| - 0.0004 19.6 0.1 0.00061 19.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|435852260|ref|YP_007313846.1| - 0.00044 20.7 1.3 0.089 13.2 0.0 2.7 3 0 0 3 3 3 1 Miro-like protein cobW PF02492.14 gi|435852260|ref|YP_007313846.1| - 0.82 9.0 3.6 0.37 10.1 0.4 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF2238 PF09997.4 gi|435852261|ref|YP_007313847.1| - 0.0002 20.7 7.3 0.0002 20.7 5.0 4.0 2 2 0 2 2 2 1 Predicted membrane protein (DUF2238) MMPL PF03176.10 gi|435852262|ref|YP_007313848.1| - 4.8e-60 203.0 12.6 5.3e-31 107.5 1.2 2.2 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|435852262|ref|YP_007313848.1| - 1.8e-15 56.7 9.0 3e-10 39.7 1.4 2.7 2 1 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|435852262|ref|YP_007313848.1| - 1.9e-13 49.2 13.4 2.8e-07 28.8 1.2 2.5 3 0 0 3 3 3 2 Patched family SecD_SecF PF02355.11 gi|435852262|ref|YP_007313848.1| - 1.8e-07 30.5 8.9 1.8e-07 30.5 6.2 2.9 2 1 0 2 2 2 1 Protein export membrane protein NPCBM_assoc PF10633.4 gi|435852263|ref|YP_007313849.1| - 2e-05 24.5 0.0 0.0058 16.6 0.0 2.5 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|435852263|ref|YP_007313849.1| - 0.00011 22.1 0.7 0.0038 17.2 0.1 3.0 2 1 0 2 2 2 1 CARDB DUF1081 PF06448.6 gi|435852263|ref|YP_007313849.1| - 0.015 15.1 0.2 0.86 9.4 0.0 2.8 3 0 0 3 3 3 0 Domain of Unknown Function (DUF1081) EphA2_TM PF14575.1 gi|435852263|ref|YP_007313849.1| - 0.071 13.5 0.7 0.24 11.8 0.0 2.3 3 0 0 3 3 3 0 Ephrin type-A receptor 2 transmembrane domain TrmB PF01978.14 gi|435852264|ref|YP_007313850.1| - 1.4e-17 63.0 0.0 3.2e-17 62.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|435852264|ref|YP_007313850.1| - 2.7e-05 23.6 0.1 9.7e-05 21.8 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|435852264|ref|YP_007313850.1| - 0.00011 21.8 0.0 0.00022 20.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|435852264|ref|YP_007313850.1| - 0.00019 21.6 0.0 0.00047 20.4 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain Regulator_TrmB PF11495.3 gi|435852264|ref|YP_007313850.1| - 0.00033 19.6 0.2 0.00079 18.4 0.1 1.8 1 1 0 1 1 1 1 Archaeal transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|435852264|ref|YP_007313850.1| - 0.0034 17.4 0.0 0.0075 16.3 0.0 1.6 1 1 0 1 1 1 1 Penicillinase repressor DUF742 PF05331.6 gi|435852264|ref|YP_007313850.1| - 0.015 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF742) MarR PF01047.17 gi|435852264|ref|YP_007313850.1| - 0.017 14.8 0.0 0.036 13.7 0.0 1.6 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|435852264|ref|YP_007313850.1| - 0.022 14.8 0.0 0.065 13.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator Rsm22 PF09243.5 gi|435852265|ref|YP_007313851.1| - 4.8e-10 38.9 0.0 1.3e-09 37.5 0.0 1.5 1 1 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.1 gi|435852265|ref|YP_007313851.1| - 7.1e-10 38.6 0.1 1.7e-09 37.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435852265|ref|YP_007313851.1| - 1.6e-07 31.8 0.0 3.4e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|435852265|ref|YP_007313851.1| - 1.3e-06 28.2 0.0 2.4e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435852265|ref|YP_007313851.1| - 0.00042 19.7 0.0 0.00077 18.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|435852265|ref|YP_007313851.1| - 0.00082 19.3 0.0 0.0016 18.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435852265|ref|YP_007313851.1| - 0.0015 18.8 0.0 0.0035 17.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|435852265|ref|YP_007313851.1| - 0.002 18.5 0.0 0.0055 17.1 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|435852265|ref|YP_007313851.1| - 0.059 12.5 0.0 0.69 9.0 0.0 2.3 2 0 0 2 2 2 0 rRNA small subunit methyltransferase G DUF496 PF04363.7 gi|435852265|ref|YP_007313851.1| - 0.094 12.5 1.5 0.17 11.7 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF496) Methyltransf_12 PF08242.7 gi|435852265|ref|YP_007313851.1| - 0.1 13.0 0.0 0.49 10.8 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain NPCBM_assoc PF10633.4 gi|435852266|ref|YP_007313852.1| - 6.1e-09 35.8 5.6 0.0013 18.7 1.0 4.0 3 1 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF916 PF06030.7 gi|435852266|ref|YP_007313852.1| - 2.9e-05 23.8 3.3 0.089 12.5 0.0 4.3 4 0 0 4 4 4 2 Bacterial protein of unknown function (DUF916) FixG_C PF11614.3 gi|435852266|ref|YP_007313852.1| - 0.00083 19.4 1.6 0.26 11.3 0.1 3.7 3 2 1 4 4 4 1 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF1573 PF07610.6 gi|435852266|ref|YP_007313852.1| - 0.039 13.5 3.3 9.6 5.8 0.2 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF1573) Fn3-like PF14310.1 gi|435852266|ref|YP_007313852.1| - 0.086 12.7 0.4 4.2 7.3 0.0 3.4 3 0 0 3 3 3 0 Fibronectin type III-like domain DUF11 PF01345.13 gi|435852266|ref|YP_007313852.1| - 0.22 11.5 9.3 20 5.3 0.3 3.8 3 0 0 3 3 3 0 Domain of unknown function DUF11 SprB PF13573.1 gi|435852266|ref|YP_007313852.1| - 3.5 7.2 9.0 0.91 9.1 0.1 4.0 4 0 0 4 4 4 0 SprB repeat Dala_Dala_lig_C PF07478.8 gi|435852267|ref|YP_007313853.1| - 4e-26 91.6 0.0 6.3e-26 91.0 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Methyltransf_18 PF12847.2 gi|435852267|ref|YP_007313853.1| - 3e-16 59.9 0.0 8e-16 58.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|435852267|ref|YP_007313853.1| - 3.5e-16 59.4 0.0 8.2e-16 58.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435852267|ref|YP_007313853.1| - 1.9e-15 56.7 0.0 3.5e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435852267|ref|YP_007313853.1| - 3.3e-14 53.0 0.0 8.7e-14 51.7 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain ATP-grasp_4 PF13535.1 gi|435852267|ref|YP_007313853.1| - 5.2e-13 49.1 0.0 1.5e-12 47.6 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Ubie_methyltran PF01209.13 gi|435852267|ref|YP_007313853.1| - 7.4e-12 44.8 0.0 2.9e-10 39.6 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|435852267|ref|YP_007313853.1| - 7e-10 38.8 0.2 2.3e-09 37.1 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435852267|ref|YP_007313853.1| - 2.8e-07 30.5 0.0 5.8e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|435852267|ref|YP_007313853.1| - 3.7e-07 29.4 0.0 6.6e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|435852267|ref|YP_007313853.1| - 5.5e-07 29.1 0.0 1.1e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|435852267|ref|YP_007313853.1| - 2e-06 28.1 0.0 6.3e-06 26.5 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain ATPgrasp_Ter PF15632.1 gi|435852267|ref|YP_007313853.1| - 7e-06 25.0 0.0 0.011 14.5 0.0 3.0 3 1 0 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon Methyltransf_9 PF08003.6 gi|435852267|ref|YP_007313853.1| - 0.0002 20.1 0.0 0.0066 15.1 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) PCMT PF01135.14 gi|435852267|ref|YP_007313853.1| - 0.0034 16.9 0.0 0.01 15.4 0.0 1.7 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|435852267|ref|YP_007313853.1| - 0.009 15.0 0.0 0.033 13.2 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase CMAS PF02353.15 gi|435852267|ref|YP_007313853.1| - 0.0093 15.0 0.0 0.016 14.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|435852267|ref|YP_007313853.1| - 0.023 14.0 0.0 0.046 13.0 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Cons_hypoth95 PF03602.10 gi|435852267|ref|YP_007313853.1| - 0.032 13.6 0.0 0.062 12.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 CPSase_L_D2 PF02786.12 gi|435852267|ref|YP_007313853.1| - 0.11 11.8 0.0 0.21 10.8 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain AAA PF00004.24 gi|435852268|ref|YP_007313854.1| - 2.1e-05 24.7 0.5 0.00038 20.6 0.0 3.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|435852268|ref|YP_007313854.1| - 3.5e-05 23.6 0.9 3.5e-05 23.6 0.6 4.1 4 0 0 4 4 4 1 AAA domain AAA_22 PF13401.1 gi|435852268|ref|YP_007313854.1| - 4.9e-05 23.4 0.8 0.0045 17.1 0.6 3.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|435852268|ref|YP_007313854.1| - 0.0022 18.0 0.0 0.0077 16.2 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|435852268|ref|YP_007313854.1| - 0.0061 15.7 0.1 0.013 14.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|435852268|ref|YP_007313854.1| - 0.026 14.8 0.2 0.026 14.8 0.1 4.1 5 0 0 5 5 5 0 AAA domain T2SE PF00437.15 gi|435852268|ref|YP_007313854.1| - 0.038 12.8 0.1 0.076 11.9 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ArgK PF03308.11 gi|435852268|ref|YP_007313854.1| - 0.19 10.4 0.0 0.33 9.6 0.0 1.3 1 0 0 1 1 1 0 ArgK protein UbiD PF01977.11 gi|435852269|ref|YP_007313855.1| - 1e-120 402.9 3.0 1.2e-120 402.7 2.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF521 PF04412.8 gi|435852270|ref|YP_007313856.1| - 1.2e-151 504.8 0.0 1.4e-151 504.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.11 gi|435852271|ref|YP_007313857.1| - 2.4e-36 123.2 0.1 3.5e-36 122.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF126 Radical_SAM PF04055.16 gi|435852272|ref|YP_007313858.1| - 3.3e-26 92.4 0.2 1.4e-25 90.3 0.2 1.8 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|435852272|ref|YP_007313858.1| - 8.9e-10 38.4 0.0 2.4e-09 37.1 0.0 1.7 2 0 0 2 2 2 1 B12 binding domain Fer4_14 PF13394.1 gi|435852272|ref|YP_007313858.1| - 0.036 14.1 0.0 0.081 12.9 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain CxxCxxCC PF03692.10 gi|435852273|ref|YP_007313859.1| - 6.7e-13 48.9 1.1 1.3e-12 47.9 0.4 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF4214 PF13946.1 gi|435852273|ref|YP_007313859.1| - 0.023 14.3 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4214) ACTH_domain PF00976.13 gi|435852274|ref|YP_007313860.1| - 0.75 9.6 6.4 0.49 10.2 0.9 2.1 2 0 0 2 2 2 0 Corticotropin ACTH domain Cpn60_TCP1 PF00118.19 gi|435852275|ref|YP_007313861.1| - 3.7e-170 566.7 18.1 4.2e-170 566.5 12.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_16 PF13191.1 gi|435852276|ref|YP_007313862.1| - 6e-16 58.9 0.0 3e-14 53.4 0.0 2.5 2 1 0 2 2 1 1 AAA ATPase domain Cdc6_C PF09079.6 gi|435852276|ref|YP_007313862.1| - 1.4e-09 37.5 0.1 1.1e-08 34.6 0.0 2.5 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|435852276|ref|YP_007313862.1| - 9.1e-09 35.5 0.0 2.7e-08 34.0 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA PF00004.24 gi|435852276|ref|YP_007313862.1| - 4.3e-08 33.4 0.0 1.1e-07 32.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|435852276|ref|YP_007313862.1| - 2.5e-07 30.6 0.0 4e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|435852276|ref|YP_007313862.1| - 2.4e-06 26.6 0.0 4.2e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_19 PF13245.1 gi|435852276|ref|YP_007313862.1| - 6.3e-06 25.8 0.2 2.7e-05 23.8 0.0 2.1 3 0 0 3 3 1 1 Part of AAA domain NTPase_1 PF03266.10 gi|435852276|ref|YP_007313862.1| - 2.2e-05 24.2 0.2 0.00045 19.9 0.0 2.7 3 0 0 3 3 3 1 NTPase AAA_11 PF13086.1 gi|435852276|ref|YP_007313862.1| - 4.7e-05 23.0 0.0 0.0001 21.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|435852276|ref|YP_007313862.1| - 0.0005 19.7 0.0 0.00089 18.9 0.0 1.4 1 0 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|435852276|ref|YP_007313862.1| - 0.00055 18.9 0.0 0.00094 18.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|435852276|ref|YP_007313862.1| - 0.00086 18.8 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF2075 PF09848.4 gi|435852276|ref|YP_007313862.1| - 0.0014 17.6 0.0 0.0021 17.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) RecA PF00154.16 gi|435852276|ref|YP_007313862.1| - 0.0017 17.5 0.0 0.0026 16.8 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_14 PF13173.1 gi|435852276|ref|YP_007313862.1| - 0.0022 17.9 0.0 0.018 14.9 0.0 2.2 1 1 1 2 2 2 1 AAA domain KAP_NTPase PF07693.9 gi|435852276|ref|YP_007313862.1| - 0.0024 16.8 0.1 0.015 14.3 0.0 1.9 1 1 1 2 2 2 1 KAP family P-loop domain AAA_17 PF13207.1 gi|435852276|ref|YP_007313862.1| - 0.0026 18.5 0.1 0.0073 17.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|435852276|ref|YP_007313862.1| - 0.0027 17.1 0.0 0.52 9.7 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_35 PF14516.1 gi|435852276|ref|YP_007313862.1| - 0.0052 15.4 0.1 0.21 10.2 0.0 2.2 1 1 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|435852276|ref|YP_007313862.1| - 0.0058 16.5 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|435852276|ref|YP_007313862.1| - 0.0063 16.8 0.0 0.016 15.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|435852276|ref|YP_007313862.1| - 0.0087 15.1 0.0 0.02 13.9 0.0 1.7 2 0 0 2 2 1 1 Zeta toxin Fer4_NifH PF00142.13 gi|435852276|ref|YP_007313862.1| - 0.009 15.2 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF815 PF05673.8 gi|435852276|ref|YP_007313862.1| - 0.0093 14.9 0.0 0.03 13.2 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) SRP54 PF00448.17 gi|435852276|ref|YP_007313862.1| - 0.011 15.2 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.17 gi|435852276|ref|YP_007313862.1| - 0.014 15.5 0.0 0.032 14.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Viral_helicase1 PF01443.13 gi|435852276|ref|YP_007313862.1| - 0.016 14.6 0.0 0.029 13.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RuvB_N PF05496.7 gi|435852276|ref|YP_007313862.1| - 0.017 14.1 0.0 0.032 13.2 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus ArgK PF03308.11 gi|435852276|ref|YP_007313862.1| - 0.024 13.4 0.0 0.055 12.2 0.0 1.6 2 0 0 2 2 1 0 ArgK protein MobB PF03205.9 gi|435852276|ref|YP_007313862.1| - 0.029 14.0 0.1 0.068 12.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.4 gi|435852276|ref|YP_007313862.1| - 0.033 12.7 0.0 0.052 12.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.1 gi|435852276|ref|YP_007313862.1| - 0.036 14.0 0.0 0.08 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|435852276|ref|YP_007313862.1| - 0.036 13.6 0.0 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|435852276|ref|YP_007313862.1| - 0.036 13.5 0.0 0.073 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain Rad17 PF03215.10 gi|435852276|ref|YP_007313862.1| - 0.038 12.6 0.0 0.052 12.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_32 PF13654.1 gi|435852276|ref|YP_007313862.1| - 0.041 12.5 0.0 0.88 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|435852276|ref|YP_007313862.1| - 0.044 13.3 0.0 0.091 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|435852276|ref|YP_007313862.1| - 0.06 12.7 0.0 0.095 12.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ResIII PF04851.10 gi|435852276|ref|YP_007313862.1| - 0.063 13.1 0.0 0.098 12.4 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit ABC_tran PF00005.22 gi|435852276|ref|YP_007313862.1| - 0.079 13.2 0.0 3.7 7.8 0.0 2.5 2 0 0 2 2 2 0 ABC transporter Thymidylate_kin PF02223.12 gi|435852276|ref|YP_007313862.1| - 0.085 12.2 0.0 0.44 9.8 0.0 2.1 1 1 1 2 2 2 0 Thymidylate kinase KTI12 PF08433.5 gi|435852276|ref|YP_007313862.1| - 0.091 11.9 0.0 0.19 10.9 0.0 1.6 2 0 0 2 2 1 0 Chromatin associated protein KTI12 AAA_25 PF13481.1 gi|435852276|ref|YP_007313862.1| - 0.12 11.7 0.0 0.39 10.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain Acetyltransf_1 PF00583.19 gi|435852277|ref|YP_007313863.1| - 6.1e-10 39.0 0.0 8.1e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|435852277|ref|YP_007313863.1| - 3.7e-08 33.4 0.0 6.7e-08 32.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|435852277|ref|YP_007313863.1| - 2.7e-05 23.8 0.0 4.4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|435852277|ref|YP_007313863.1| - 0.00029 20.9 0.0 0.00095 19.2 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|435852277|ref|YP_007313863.1| - 0.00052 19.9 0.0 0.00065 19.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|435852277|ref|YP_007313863.1| - 0.0056 16.6 0.2 0.1 12.5 0.0 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Aminotran_5 PF00266.14 gi|435852278|ref|YP_007313864.1| - 6.7e-125 416.6 0.1 7.6e-125 416.4 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|435852278|ref|YP_007313864.1| - 1.3e-07 30.2 0.0 2.3e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|435852278|ref|YP_007313864.1| - 2.6e-07 29.9 0.2 3.9e-07 29.4 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|435852278|ref|YP_007313864.1| - 5.1e-05 22.5 0.0 6.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Plug PF07715.10 gi|435852278|ref|YP_007313864.1| - 0.013 15.8 0.0 0.033 14.5 0.0 1.7 1 0 0 1 1 1 0 TonB-dependent Receptor Plug Domain GDC-P PF02347.11 gi|435852278|ref|YP_007313864.1| - 0.047 12.3 0.2 0.21 10.2 0.0 1.9 2 0 0 2 2 2 0 Glycine cleavage system P-protein YcaO PF02624.11 gi|435852280|ref|YP_007313866.1| - 4.8e-83 279.4 0.0 6.5e-83 278.9 0.0 1.2 1 0 0 1 1 1 1 YcaO-like family TfuA PF07812.7 gi|435852281|ref|YP_007313867.1| - 1.1e-45 153.9 0.0 2.2e-45 152.9 0.0 1.5 1 0 0 1 1 1 1 TfuA-like protein Abi PF02517.11 gi|435852282|ref|YP_007313868.1| - 5.2e-14 52.1 6.1 5.2e-14 52.1 4.2 2.5 2 1 0 2 2 2 1 CAAX protease self-immunity Flavin_Reduct PF01613.13 gi|435852283|ref|YP_007313869.1| - 5.4e-31 107.5 0.0 6e-31 107.3 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain CxxCxxCC PF03692.10 gi|435852284|ref|YP_007313870.1| - 4e-09 36.8 2.4 7e-09 36.0 1.7 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.3 gi|435852284|ref|YP_007313870.1| - 1.7 8.1 5.6 0.61 9.5 0.1 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3109) UPF0014 PF03649.8 gi|435852285|ref|YP_007313871.1| - 1.7e-75 253.4 15.8 2e-75 253.1 10.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) ATPase_gene1 PF09527.5 gi|435852285|ref|YP_007313871.1| - 0.053 13.3 0.2 0.053 13.3 0.2 2.2 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) FUSC PF04632.7 gi|435852285|ref|YP_007313871.1| - 0.057 11.8 0.1 0.094 11.1 0.1 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DICT PF10069.4 gi|435852285|ref|YP_007313871.1| - 0.066 12.7 0.1 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 Sensory domain found in DIguanylate Cyclases & Two-component systems DUF843 PF05814.6 gi|435852285|ref|YP_007313871.1| - 0.95 9.2 4.3 0.45 10.3 1.0 2.0 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) ABC_tran PF00005.22 gi|435852286|ref|YP_007313872.1| - 6.7e-30 104.1 0.0 9e-30 103.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435852286|ref|YP_007313872.1| - 2.3e-12 47.4 1.3 1.6e-06 28.2 0.3 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|435852286|ref|YP_007313872.1| - 3.4e-09 36.2 0.5 2e-07 30.5 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|435852286|ref|YP_007313872.1| - 4.8e-05 23.4 0.0 0.00011 22.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|435852286|ref|YP_007313872.1| - 5.1e-05 22.7 0.0 9e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|435852286|ref|YP_007313872.1| - 0.0006 19.8 0.1 0.0013 18.7 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|435852286|ref|YP_007313872.1| - 0.0014 18.1 0.0 0.0045 16.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|435852286|ref|YP_007313872.1| - 0.0023 18.7 0.4 0.003 18.3 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|435852286|ref|YP_007313872.1| - 0.0034 17.0 0.0 0.051 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|435852286|ref|YP_007313872.1| - 0.005 16.7 0.4 0.28 11.1 0.3 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|435852286|ref|YP_007313872.1| - 0.0063 15.7 0.4 0.012 14.7 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|435852286|ref|YP_007313872.1| - 0.0074 16.5 0.1 0.012 15.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|435852286|ref|YP_007313872.1| - 0.011 15.2 0.4 0.036 13.4 0.1 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|435852286|ref|YP_007313872.1| - 0.015 15.2 0.0 0.17 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|435852286|ref|YP_007313872.1| - 0.015 13.9 0.0 0.021 13.4 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein T2SE PF00437.15 gi|435852286|ref|YP_007313872.1| - 0.015 14.1 0.0 0.026 13.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|435852286|ref|YP_007313872.1| - 0.017 14.6 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|435852286|ref|YP_007313872.1| - 0.018 15.4 0.5 0.02 15.2 0.4 1.5 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|435852286|ref|YP_007313872.1| - 0.027 14.1 0.0 0.06 13.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|435852286|ref|YP_007313872.1| - 0.029 14.2 0.0 0.048 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|435852286|ref|YP_007313872.1| - 0.053 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|435852286|ref|YP_007313872.1| - 0.065 12.9 0.0 0.1 12.2 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|435852286|ref|YP_007313872.1| - 0.065 12.8 0.1 0.24 11.0 0.0 1.9 2 1 0 2 2 2 0 NACHT domain ABC_ATPase PF09818.4 gi|435852286|ref|YP_007313872.1| - 0.071 11.6 0.0 5.3 5.5 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|435852286|ref|YP_007313872.1| - 0.082 11.7 0.1 0.26 10.1 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.17 gi|435852286|ref|YP_007313872.1| - 0.093 12.9 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.10 gi|435852286|ref|YP_007313872.1| - 0.12 12.1 0.1 0.74 9.5 0.0 2.0 2 0 0 2 2 2 0 NTPase MarR PF01047.17 gi|435852287|ref|YP_007313873.1| - 2.1e-10 40.1 0.1 3.2e-10 39.5 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|435852287|ref|YP_007313873.1| - 1.5e-07 30.9 0.0 2.2e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|435852287|ref|YP_007313873.1| - 3.2e-05 24.1 0.0 4.8e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|435852287|ref|YP_007313873.1| - 0.0012 18.6 0.5 0.0017 18.1 0.1 1.6 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC HTH_24 PF13412.1 gi|435852287|ref|YP_007313873.1| - 0.0021 17.3 1.4 0.0026 17.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding CENP-B_N PF04218.8 gi|435852287|ref|YP_007313873.1| - 0.0024 17.2 0.7 0.0047 16.3 0.0 1.9 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Penicillinase_R PF03965.11 gi|435852287|ref|YP_007313873.1| - 0.0039 17.2 0.0 0.0062 16.6 0.0 1.6 1 1 0 1 1 1 1 Penicillinase repressor Rrf2 PF02082.15 gi|435852287|ref|YP_007313873.1| - 0.0058 16.7 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|435852287|ref|YP_007313873.1| - 0.01 15.5 0.1 0.017 14.8 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FeoC PF09012.5 gi|435852287|ref|YP_007313873.1| - 0.015 15.0 0.0 0.031 13.9 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator RNA_pol_Rpc34 PF05158.7 gi|435852287|ref|YP_007313873.1| - 0.029 13.5 0.5 0.04 13.0 0.3 1.3 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HxlR PF01638.12 gi|435852287|ref|YP_007313873.1| - 0.035 13.7 0.1 0.064 12.8 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|435852287|ref|YP_007313873.1| - 0.043 13.8 0.1 0.07 13.1 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_psq PF05225.11 gi|435852287|ref|YP_007313873.1| - 0.066 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Fe_dep_repress PF01325.14 gi|435852287|ref|YP_007313873.1| - 0.077 12.9 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain AAA_18 PF13238.1 gi|435852288|ref|YP_007313874.1| - 7.3e-21 74.8 0.2 1.1e-20 74.2 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|435852288|ref|YP_007313874.1| - 1.1e-15 58.4 0.3 3e-15 57.1 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|435852288|ref|YP_007313874.1| - 1.7e-06 28.0 0.2 0.00072 19.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|435852288|ref|YP_007313874.1| - 5.6e-06 26.4 0.5 2.5e-05 24.2 0.4 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|435852288|ref|YP_007313874.1| - 0.00023 21.0 0.6 0.78 9.6 0.0 2.9 2 1 0 2 2 2 2 Adenylate kinase SKI PF01202.17 gi|435852288|ref|YP_007313874.1| - 0.00026 20.8 0.1 0.004 17.0 0.0 2.1 1 1 0 1 1 1 1 Shikimate kinase CoaE PF01121.15 gi|435852288|ref|YP_007313874.1| - 0.0029 17.0 0.5 0.13 11.6 0.0 2.3 1 1 0 2 2 2 1 Dephospho-CoA kinase KTI12 PF08433.5 gi|435852288|ref|YP_007313874.1| - 0.0048 16.1 0.4 0.02 14.1 0.0 1.9 1 1 0 2 2 2 1 Chromatin associated protein KTI12 dNK PF01712.14 gi|435852288|ref|YP_007313874.1| - 0.0095 15.8 0.1 0.012 15.5 0.1 1.3 1 0 0 1 1 1 1 Deoxynucleoside kinase Zeta_toxin PF06414.7 gi|435852288|ref|YP_007313874.1| - 0.02 13.9 0.0 0.73 8.8 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin PRK PF00485.13 gi|435852288|ref|YP_007313874.1| - 0.028 13.9 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.9 gi|435852288|ref|YP_007313874.1| - 0.036 13.7 2.0 3.4 7.3 0.2 2.2 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|435852288|ref|YP_007313874.1| - 0.041 14.0 0.2 0.089 12.9 0.2 1.8 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|435852288|ref|YP_007313874.1| - 0.043 13.2 0.3 0.58 9.5 0.1 2.2 2 0 0 2 2 2 0 Thymidylate kinase ArgK PF03308.11 gi|435852288|ref|YP_007313874.1| - 0.053 12.2 1.6 0.31 9.7 0.2 2.1 2 0 0 2 2 2 0 ArgK protein DUF2075 PF09848.4 gi|435852288|ref|YP_007313874.1| - 0.1 11.5 0.3 0.16 10.9 0.2 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|435852288|ref|YP_007313874.1| - 0.12 12.1 2.3 0.27 11.0 1.6 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|435852288|ref|YP_007313874.1| - 0.13 12.5 1.2 0.67 10.1 0.6 2.4 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|435852288|ref|YP_007313874.1| - 0.42 10.5 3.4 4 7.3 2.3 2.1 1 1 0 1 1 1 0 AAA ATPase domain GATase PF00117.23 gi|435852289|ref|YP_007313875.1| - 3.9e-48 163.4 0.0 4.3e-48 163.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|435852289|ref|YP_007313875.1| - 2.7e-19 69.4 0.0 4.6e-19 68.7 0.0 1.4 1 1 0 1 1 1 1 Peptidase C26 PilZ PF07238.9 gi|435852289|ref|YP_007313875.1| - 0.029 14.3 0.0 0.063 13.3 0.0 1.5 1 1 0 1 1 1 0 PilZ domain DNase-RNase PF02577.9 gi|435852289|ref|YP_007313875.1| - 0.13 11.4 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Bifunctional nuclease Chorismate_bind PF00425.13 gi|435852290|ref|YP_007313876.1| - 2.5e-94 315.3 0.0 3.7e-91 305.0 0.0 2.7 3 0 0 3 3 3 2 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|435852290|ref|YP_007313876.1| - 9.6e-28 96.9 0.1 1.1e-26 93.5 0.0 2.6 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region F5_F8_type_C PF00754.20 gi|435852290|ref|YP_007313876.1| - 0.065 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 F5/8 type C domain PRAI PF00697.17 gi|435852291|ref|YP_007313877.1| - 8.9e-35 120.0 0.0 1.1e-34 119.6 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.12 gi|435852291|ref|YP_007313877.1| - 0.038 13.1 0.1 0.092 11.8 0.0 1.6 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI Glu_synthase PF01645.12 gi|435852291|ref|YP_007313877.1| - 0.042 12.7 2.0 0.094 11.6 0.1 2.2 2 1 0 2 2 2 0 Conserved region in glutamate synthase Glycos_transf_3 PF00591.16 gi|435852292|ref|YP_007313878.1| - 1.1e-97 326.4 2.1 1.7e-97 325.7 1.5 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|435852292|ref|YP_007313878.1| - 2e-19 68.8 2.8 5.2e-19 67.5 1.9 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain VWA_2 PF13519.1 gi|435852292|ref|YP_007313878.1| - 0.01 15.9 0.1 0.032 14.3 0.1 1.9 1 1 0 1 1 1 0 von Willebrand factor type A domain FtsZ_C PF12327.3 gi|435852292|ref|YP_007313878.1| - 0.076 13.0 1.5 0.25 11.4 0.1 2.5 2 1 1 3 3 3 0 FtsZ family, C-terminal domain GGDN PF05165.7 gi|435852293|ref|YP_007313879.1| - 0.022 13.8 0.1 0.026 13.5 0.0 1.1 1 0 0 1 1 1 0 GGDN family Arginosuc_synth PF00764.14 gi|435852293|ref|YP_007313879.1| - 0.13 11.2 0.0 0.15 11.0 0.0 1.0 1 0 0 1 1 1 0 Arginosuccinate synthase GATase_3 PF07685.9 gi|435852294|ref|YP_007313880.1| - 3.5e-43 146.9 0.5 5.8e-43 146.2 0.4 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|435852294|ref|YP_007313880.1| - 4.8e-26 91.3 0.1 8.9e-26 90.5 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|435852294|ref|YP_007313880.1| - 3.4e-17 62.6 0.0 8.8e-17 61.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain GATase PF00117.23 gi|435852294|ref|YP_007313880.1| - 2.4e-07 30.4 0.8 1.4e-06 27.8 0.6 2.1 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|435852294|ref|YP_007313880.1| - 0.00087 18.9 0.1 0.0026 17.3 0.0 1.8 2 0 0 2 2 2 1 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.19 gi|435852294|ref|YP_007313880.1| - 0.11 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 DJ-1/PfpI family Methyltransf_18 PF12847.2 gi|435852295|ref|YP_007313881.1| - 3.4e-12 46.9 0.1 4.5e-12 46.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435852295|ref|YP_007313881.1| - 8.4e-11 41.6 0.1 9.8e-11 41.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|435852295|ref|YP_007313881.1| - 3.6e-10 39.4 0.1 5.2e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|435852295|ref|YP_007313881.1| - 4.2e-07 29.3 0.8 5.2e-07 29.0 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|435852295|ref|YP_007313881.1| - 1.2e-06 28.2 0.0 1.4e-06 27.9 0.0 1.2 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|435852295|ref|YP_007313881.1| - 1.8e-06 28.3 0.1 2.6e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435852295|ref|YP_007313881.1| - 2.5e-06 27.7 0.0 3.4e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|435852295|ref|YP_007313881.1| - 4.1e-06 26.8 0.0 6.4e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|435852295|ref|YP_007313881.1| - 3.8e-05 24.0 0.1 6.1e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|435852295|ref|YP_007313881.1| - 5.6e-05 22.5 0.0 7.9e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 Cons_hypoth95 PF03602.10 gi|435852295|ref|YP_007313881.1| - 7.1e-05 22.2 0.2 0.00011 21.6 0.1 1.3 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|435852295|ref|YP_007313881.1| - 7.8e-05 21.8 0.2 0.0001 21.5 0.2 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.13 gi|435852295|ref|YP_007313881.1| - 0.0001 21.9 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.12 gi|435852295|ref|YP_007313881.1| - 0.00083 18.4 0.1 0.0015 17.6 0.0 1.4 2 0 0 2 2 2 1 Putative methyltransferase CMAS PF02353.15 gi|435852295|ref|YP_007313881.1| - 0.0016 17.5 0.0 0.0021 17.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.1 gi|435852295|ref|YP_007313881.1| - 0.003 17.2 0.0 0.0038 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|435852295|ref|YP_007313881.1| - 0.0035 16.3 0.1 0.0045 16.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|435852295|ref|YP_007313881.1| - 0.0041 16.8 0.0 0.0059 16.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|435852295|ref|YP_007313881.1| - 0.0088 14.7 0.1 0.0099 14.5 0.1 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_24 PF13578.1 gi|435852295|ref|YP_007313881.1| - 0.011 16.5 0.0 0.018 15.8 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain GidB PF02527.10 gi|435852295|ref|YP_007313881.1| - 0.012 14.7 0.1 0.014 14.5 0.1 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Met_10 PF02475.11 gi|435852295|ref|YP_007313881.1| - 0.012 15.1 0.5 0.021 14.4 0.3 1.4 1 1 0 1 1 1 0 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|435852295|ref|YP_007313881.1| - 0.023 14.2 0.1 0.034 13.7 0.1 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF1537 PF07005.6 gi|435852295|ref|YP_007313881.1| - 0.038 13.6 0.2 0.062 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF1537 RrnaAD PF00398.15 gi|435852295|ref|YP_007313881.1| - 0.059 12.3 0.0 0.11 11.5 0.0 1.3 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|435852295|ref|YP_007313881.1| - 0.07 12.1 0.1 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_16 PF10294.4 gi|435852295|ref|YP_007313881.1| - 0.081 12.3 0.0 0.11 11.9 0.0 1.3 1 1 0 1 1 1 0 Putative methyltransferase TP_methylase PF00590.15 gi|435852296|ref|YP_007313882.1| - 9.1e-29 100.6 0.0 2.1e-28 99.4 0.0 1.5 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peptidase_S76 PF13611.1 gi|435852296|ref|YP_007313882.1| - 0.075 13.1 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Serine peptidase of plant viral polyprotein, P1 TP_methylase PF00590.15 gi|435852297|ref|YP_007313883.1| - 4.8e-45 153.8 0.1 5.5e-45 153.6 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|435852297|ref|YP_007313883.1| - 0.00029 21.0 0.1 0.00065 19.9 0.1 1.7 1 1 0 1 1 1 1 Radical SAM superfamily CbiG_N PF11760.3 gi|435852298|ref|YP_007313884.1| - 1.6e-33 114.2 0.5 3.5e-33 113.1 0.1 1.8 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|435852299|ref|YP_007313885.1| - 1.4e-29 102.7 0.4 1.6e-29 102.6 0.3 1.0 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus NusA_N PF08529.6 gi|435852299|ref|YP_007313885.1| - 0.0025 17.8 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 NusA N-terminal domain TP_methylase PF00590.15 gi|435852300|ref|YP_007313886.1| - 9.3e-35 120.2 0.2 1.1e-34 120.0 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DBI_PRT PF02277.12 gi|435852300|ref|YP_007313886.1| - 0.0081 15.2 1.2 0.012 14.7 0.8 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase DUF318 PF03773.8 gi|435852300|ref|YP_007313886.1| - 0.012 14.6 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 Predicted permease CbiC PF02570.10 gi|435852301|ref|YP_007313887.1| - 2.6e-59 199.9 2.4 3.5e-59 199.5 1.7 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase Reductase_C PF14759.1 gi|435852301|ref|YP_007313887.1| - 0.0076 16.5 0.3 0.15 12.3 0.0 2.8 3 0 0 3 3 3 1 Reductase C-terminal DsbD PF02683.10 gi|435852302|ref|YP_007313888.1| - 2.5e-36 125.2 24.9 3.1e-36 124.9 17.3 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|435852302|ref|YP_007313888.1| - 3.1e-12 46.6 23.0 4.1e-12 46.2 15.9 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region UPF0016 PF01169.14 gi|435852302|ref|YP_007313888.1| - 0.0051 16.9 2.8 0.0051 16.9 2.0 2.9 2 1 1 3 3 3 1 Uncharacterized protein family UPF0016 Thioredoxin PF00085.15 gi|435852303|ref|YP_007313889.1| - 3e-11 42.9 0.0 4e-11 42.5 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|435852303|ref|YP_007313889.1| - 5.5e-06 26.1 0.1 5.5e-05 22.8 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_6 PF13848.1 gi|435852303|ref|YP_007313889.1| - 0.0003 20.6 0.0 0.00041 20.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_2 PF13098.1 gi|435852303|ref|YP_007313889.1| - 0.015 15.4 0.0 0.047 13.8 0.0 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|435852303|ref|YP_007313889.1| - 0.052 13.5 0.0 0.079 12.9 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin RibD_C PF01872.12 gi|435852304|ref|YP_007313890.1| - 7.1e-54 182.4 0.0 7.9e-54 182.3 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain CBS PF00571.23 gi|435852305|ref|YP_007313891.1| - 4e-46 154.5 6.0 1e-14 53.9 0.1 4.1 4 0 0 4 4 4 4 CBS domain Usp PF00582.21 gi|435852306|ref|YP_007313892.1| - 1.6e-36 125.5 0.0 1.8e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Aldo_ket_red PF00248.16 gi|435852306|ref|YP_007313892.1| - 0.012 14.5 0.0 0.038 12.8 0.0 1.7 1 1 1 2 2 2 0 Aldo/keto reductase family IF2_N PF04760.10 gi|435852306|ref|YP_007313892.1| - 0.016 14.8 0.2 0.32 10.6 0.2 2.3 1 1 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region Glyco_hydro_97 PF10566.4 gi|435852306|ref|YP_007313892.1| - 0.12 11.4 0.2 2.9 6.9 0.1 2.0 1 1 1 2 2 2 0 Glycoside hydrolase 97 PCP_red PF08369.5 gi|435852306|ref|YP_007313892.1| - 0.15 11.9 0.3 11 5.9 0.0 2.8 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit Amidohydro_1 PF01979.15 gi|435852307|ref|YP_007313893.1| - 2.2e-13 50.5 0.0 8.6e-12 45.3 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|435852307|ref|YP_007313893.1| - 2.8e-08 34.1 0.0 1.1e-06 28.9 0.0 2.3 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|435852307|ref|YP_007313893.1| - 6.9e-07 28.4 0.0 1e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|435852307|ref|YP_007313893.1| - 0.0048 16.6 0.1 0.0091 15.7 0.1 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|435852307|ref|YP_007313893.1| - 0.13 11.4 0.1 1.5 7.9 0.0 2.4 2 1 1 3 3 3 0 Amidohydrolase family DUF167 PF02594.11 gi|435852308|ref|YP_007313894.1| - 5e-19 68.0 0.4 6e-19 67.7 0.3 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 IspD PF01128.14 gi|435852308|ref|YP_007313894.1| - 0.029 13.8 0.0 0.033 13.7 0.0 1.0 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Toprim_4 PF13662.1 gi|435852310|ref|YP_007313896.1| - 7.8e-06 25.8 0.0 1.7e-05 24.7 0.0 1.5 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|435852310|ref|YP_007313896.1| - 0.00075 19.4 0.2 0.013 15.4 0.1 2.3 1 1 0 1 1 1 1 Toprim domain PhoU_div PF01865.11 gi|435852310|ref|YP_007313896.1| - 0.021 14.0 0.0 0.046 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF47 Toprim_2 PF13155.1 gi|435852310|ref|YP_007313896.1| - 0.055 13.7 0.0 0.077 13.3 0.0 1.4 1 0 0 1 1 1 0 Toprim-like DUF356 PF04009.7 gi|435852311|ref|YP_007313897.1| - 2.8e-43 146.3 0.4 3.3e-43 146.1 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) P5CR_dimer PF14748.1 gi|435852312|ref|YP_007313898.1| - 1.1e-42 144.3 1.8 1.4e-42 144.0 0.5 1.7 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|435852312|ref|YP_007313898.1| - 6.5e-20 71.3 0.3 1.7e-19 70.0 0.2 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|435852312|ref|YP_007313898.1| - 2.7e-05 23.9 8.0 0.00052 19.7 5.5 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|435852312|ref|YP_007313898.1| - 5e-05 22.7 1.7 0.00011 21.6 1.2 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|435852312|ref|YP_007313898.1| - 8.8e-05 22.3 0.4 0.00027 20.8 0.2 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|435852312|ref|YP_007313898.1| - 0.0075 15.6 0.1 0.011 15.0 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|435852312|ref|YP_007313898.1| - 0.019 14.1 0.0 0.031 13.4 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|435852312|ref|YP_007313898.1| - 0.025 14.9 0.1 0.043 14.1 0.1 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|435852312|ref|YP_007313898.1| - 0.043 13.7 0.1 0.098 12.5 0.1 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus PDH PF02153.12 gi|435852312|ref|YP_007313898.1| - 0.075 11.9 0.4 0.14 10.9 0.3 1.6 1 1 0 1 1 1 0 Prephenate dehydrogenase Shikimate_DH PF01488.15 gi|435852312|ref|YP_007313898.1| - 0.2 11.7 1.7 0.39 10.8 0.2 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase HTH_3 PF01381.17 gi|435852313|ref|YP_007313899.1| - 2.2e-05 24.2 1.5 3.5e-05 23.5 1.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|435852313|ref|YP_007313899.1| - 3.4e-05 23.9 0.1 5.6e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|435852313|ref|YP_007313899.1| - 0.001 18.6 2.0 0.001 18.6 0.4 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|435852313|ref|YP_007313899.1| - 0.0017 18.3 0.7 0.0031 17.5 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|435852313|ref|YP_007313899.1| - 0.017 15.8 3.2 0.026 15.3 1.5 1.9 1 1 1 2 2 2 0 Homeodomain-like domain DUF1272 PF06906.6 gi|435852313|ref|YP_007313899.1| - 0.023 14.5 0.4 0.038 13.8 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) Chordopox_RPO7 PF05864.7 gi|435852313|ref|YP_007313899.1| - 0.09 12.8 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) AAA PF00004.24 gi|435852314|ref|YP_007313900.1| - 2.6e-44 150.6 0.2 6.8e-44 149.2 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|435852314|ref|YP_007313900.1| - 6.6e-09 35.6 0.0 1.8e-08 34.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|435852314|ref|YP_007313900.1| - 4.4e-08 33.2 0.0 1.2e-06 28.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|435852314|ref|YP_007313900.1| - 5.5e-07 29.7 0.3 5.4e-06 26.5 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.8 gi|435852314|ref|YP_007313900.1| - 7.1e-07 28.4 0.0 1.4e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|435852314|ref|YP_007313900.1| - 1.2e-05 25.4 1.5 0.00025 21.2 0.2 2.6 2 1 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|435852314|ref|YP_007313900.1| - 0.00012 21.2 0.0 0.00024 20.2 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|435852314|ref|YP_007313900.1| - 0.00043 20.5 0.8 0.0054 17.0 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|435852314|ref|YP_007313900.1| - 0.00067 20.4 0.2 0.0024 18.7 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|435852314|ref|YP_007313900.1| - 0.0023 17.6 0.1 0.0069 16.1 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|435852314|ref|YP_007313900.1| - 0.0025 17.3 0.0 0.025 14.0 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain KaiC PF06745.8 gi|435852314|ref|YP_007313900.1| - 0.0025 16.9 1.6 0.028 13.5 0.0 2.8 2 1 1 3 3 3 1 KaiC AAA_25 PF13481.1 gi|435852314|ref|YP_007313900.1| - 0.0037 16.7 3.8 0.086 12.2 0.1 3.0 2 1 0 3 3 3 1 AAA domain AAA_28 PF13521.1 gi|435852314|ref|YP_007313900.1| - 0.004 17.1 0.1 0.012 15.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|435852314|ref|YP_007313900.1| - 0.0051 15.9 0.3 0.012 14.7 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin TIP49 PF06068.8 gi|435852314|ref|YP_007313900.1| - 0.0054 15.5 0.0 0.01 14.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus Troponin PF00992.15 gi|435852314|ref|YP_007313900.1| - 0.0061 16.6 1.5 0.015 15.3 1.1 1.6 1 0 0 1 1 1 1 Troponin RNA_helicase PF00910.17 gi|435852314|ref|YP_007313900.1| - 0.0075 16.4 0.0 0.015 15.4 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_3 PF07726.6 gi|435852314|ref|YP_007313900.1| - 0.0075 15.8 0.0 0.018 14.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|435852314|ref|YP_007313900.1| - 0.01 15.3 1.7 0.052 13.1 0.1 2.4 3 0 0 3 3 2 0 AAA domain CCDC144C PF14915.1 gi|435852314|ref|YP_007313900.1| - 0.013 14.4 2.6 0.021 13.7 1.8 1.2 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region Sigma54_activ_2 PF14532.1 gi|435852314|ref|YP_007313900.1| - 0.014 15.4 0.0 0.089 12.8 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|435852314|ref|YP_007313900.1| - 0.014 14.7 0.2 0.045 13.1 0.0 1.8 2 0 0 2 2 1 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|435852314|ref|YP_007313900.1| - 0.02 13.7 0.0 0.041 12.7 0.0 1.6 1 1 0 1 1 1 0 NB-ARC domain GIDA_assoc_3 PF13932.1 gi|435852314|ref|YP_007313900.1| - 0.025 14.6 0.1 7.1 6.7 0.0 3.1 2 1 1 3 3 3 0 GidA associated domain 3 NACHT PF05729.7 gi|435852314|ref|YP_007313900.1| - 0.025 14.2 0.2 0.32 10.6 0.0 2.3 1 1 1 2 2 2 0 NACHT domain AAA_33 PF13671.1 gi|435852314|ref|YP_007313900.1| - 0.027 14.3 0.1 0.074 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|435852314|ref|YP_007313900.1| - 0.032 13.4 0.0 0.072 12.2 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Tektin PF03148.9 gi|435852314|ref|YP_007313900.1| - 0.039 12.4 4.4 0.021 13.3 1.4 1.7 2 0 0 2 2 2 0 Tektin family AAA_14 PF13173.1 gi|435852314|ref|YP_007313900.1| - 0.062 13.2 0.0 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|435852314|ref|YP_007313900.1| - 0.066 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|435852314|ref|YP_007313900.1| - 0.084 11.8 0.0 0.15 10.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|435852314|ref|YP_007313900.1| - 0.094 12.4 1.5 1.8 8.1 0.0 2.6 2 1 1 3 3 3 0 Archaeal ATPase Cortex-I_coil PF09304.5 gi|435852314|ref|YP_007313900.1| - 0.22 11.6 3.5 0.16 12.0 1.0 1.8 2 0 0 2 2 1 0 Cortexillin I, coiled coil bZIP_2 PF07716.10 gi|435852314|ref|YP_007313900.1| - 0.25 11.2 5.4 0.28 11.0 0.5 2.5 2 0 0 2 2 2 0 Basic region leucine zipper DUF99 PF01949.11 gi|435852315|ref|YP_007313901.1| - 9.6e-65 217.1 0.1 1.1e-64 217.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 PGM_PMM_I PF02878.11 gi|435852316|ref|YP_007313902.1| - 1e-41 141.6 0.2 2.7e-41 140.2 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|435852316|ref|YP_007313902.1| - 4.2e-26 91.3 0.0 7.8e-26 90.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|435852316|ref|YP_007313902.1| - 2.2e-25 88.8 0.4 7.2e-25 87.2 0.1 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|435852316|ref|YP_007313902.1| - 9.4e-11 41.5 0.0 2.7e-10 40.0 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_18 PF12847.2 gi|435852316|ref|YP_007313902.1| - 0.021 15.3 0.0 0.072 13.6 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Asn_synthase PF00733.16 gi|435852317|ref|YP_007313903.1| - 7.3e-12 45.3 0.1 1.9e-11 43.9 0.1 1.7 1 1 1 2 2 2 1 Asparagine synthase NAD_synthase PF02540.12 gi|435852317|ref|YP_007313903.1| - 6.6e-09 35.0 0.0 1.1e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|435852317|ref|YP_007313903.1| - 1.7e-08 33.4 0.0 2.4e-06 26.3 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|435852317|ref|YP_007313903.1| - 1.7e-07 30.7 0.0 6.4e-07 28.8 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|435852317|ref|YP_007313903.1| - 7.9e-05 22.2 0.1 0.0011 18.4 0.0 2.1 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.14 gi|435852317|ref|YP_007313903.1| - 0.00015 20.9 0.1 0.00038 19.6 0.0 1.6 2 0 0 2 2 2 1 Arginosuccinate synthase ThiI PF02568.9 gi|435852317|ref|YP_007313903.1| - 0.01 15.3 0.0 0.019 14.4 0.0 1.5 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|435852317|ref|YP_007313903.1| - 0.014 15.2 0.0 0.029 14.2 0.0 1.6 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Acetyltransf_7 PF13508.1 gi|435852318|ref|YP_007313904.1| - 1.5e-08 34.6 0.1 2.3e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|435852318|ref|YP_007313904.1| - 1.4e-06 28.2 0.1 3.6e-06 26.8 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|435852318|ref|YP_007313904.1| - 5.5e-05 23.2 0.0 8.2e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|435852318|ref|YP_007313904.1| - 0.0032 17.3 0.0 0.1 12.4 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|435852318|ref|YP_007313904.1| - 0.0058 16.3 0.0 0.014 15.1 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|435852318|ref|YP_007313904.1| - 0.018 15.2 0.0 0.039 14.0 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|435852318|ref|YP_007313904.1| - 0.064 13.1 0.0 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase AstA PF04958.7 gi|435852318|ref|YP_007313904.1| - 0.081 11.3 0.0 0.34 9.2 0.0 1.8 1 1 1 2 2 2 0 Arginine N-succinyltransferase beta subunit DUF531 PF04407.7 gi|435852319|ref|YP_007313905.1| - 6.2e-84 280.1 0.1 7.2e-84 279.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) Methyltrn_RNA_4 PF09936.4 gi|435852319|ref|YP_007313905.1| - 0.083 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 SAM-dependent RNA methyltransferase SPOUT_MTase_2 PF14419.1 gi|435852319|ref|YP_007313905.1| - 0.1 11.7 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP tRNA-synt_2d PF01409.15 gi|435852320|ref|YP_007313906.1| - 2.2e-94 315.2 0.0 2.9e-94 314.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|435852320|ref|YP_007313906.1| - 3.6e-05 23.4 0.0 0.00011 21.8 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|435852320|ref|YP_007313906.1| - 0.00056 18.7 0.3 0.18 10.5 0.0 3.1 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) HTH_45 PF14947.1 gi|435852320|ref|YP_007313906.1| - 0.0014 18.4 0.2 0.32 10.8 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix TrmB PF01978.14 gi|435852320|ref|YP_007313906.1| - 0.004 16.8 0.5 0.023 14.3 0.1 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|435852320|ref|YP_007313906.1| - 0.051 13.2 0.1 0.53 9.9 0.0 2.3 2 0 0 2 2 2 0 MarR family Rio2_N PF09202.6 gi|435852320|ref|YP_007313906.1| - 0.072 13.1 0.0 12 6.1 0.0 2.4 2 0 0 2 2 2 0 Rio2, N-terminal HTH_Crp_2 PF13545.1 gi|435852320|ref|YP_007313906.1| - 0.094 12.5 0.5 0.26 11.1 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain tRNA-synt_1b PF00579.20 gi|435852321|ref|YP_007313907.1| - 3e-36 125.0 0.0 9.3e-21 74.1 0.0 2.0 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Toxin-deaminase PF14424.1 gi|435852321|ref|YP_007313907.1| - 0.097 12.6 0.0 5.8 6.9 0.1 2.3 2 0 0 2 2 2 0 The BURPS668_1122 family of deaminases Radical_SAM PF04055.16 gi|435852322|ref|YP_007313908.1| - 2.8e-13 50.3 0.2 4.4e-13 49.7 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|435852322|ref|YP_007313908.1| - 0.00012 22.3 0.1 0.00034 20.8 0.1 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|435852322|ref|YP_007313908.1| - 0.00019 21.4 0.0 0.00038 20.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|435852322|ref|YP_007313908.1| - 0.0057 16.7 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain KaiC PF06745.8 gi|435852323|ref|YP_007313909.1| - 9.4e-09 34.7 0.5 9.7e-09 34.6 0.4 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|435852323|ref|YP_007313909.1| - 0.014 14.8 0.2 0.04 13.3 0.1 1.6 2 0 0 2 2 2 0 AAA domain DAO PF01266.19 gi|435852323|ref|YP_007313909.1| - 0.14 11.0 0.0 0.16 10.8 0.0 1.0 1 0 0 1 1 1 0 FAD dependent oxidoreductase eIF-5_eIF-2B PF01873.12 gi|435852324|ref|YP_007313910.1| - 5.5e-38 129.4 0.0 7.8e-38 128.9 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|435852324|ref|YP_007313910.1| - 3.6e-10 39.4 0.3 9e-10 38.2 0.1 1.8 2 0 0 2 2 2 1 TRAM domain Zn-ribbon_8 PF09723.5 gi|435852324|ref|YP_007313910.1| - 0.0093 15.8 0.5 0.016 15.1 0.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain ZF-HD_dimer PF04770.7 gi|435852324|ref|YP_007313910.1| - 0.11 12.5 0.3 0.19 11.8 0.2 1.5 1 0 0 1 1 1 0 ZF-HD protein dimerisation region DNA_RNApol_7kD PF03604.8 gi|435852324|ref|YP_007313910.1| - 3.9 7.0 6.9 21 4.6 0.3 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L16 PF00252.13 gi|435852325|ref|YP_007313911.1| - 1.9e-33 115.0 0.7 2.2e-33 114.8 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Methyltransf_3 PF01596.12 gi|435852325|ref|YP_007313911.1| - 0.11 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase MoCF_biosynth PF00994.19 gi|435852326|ref|YP_007313912.1| - 5.7e-30 103.6 0.0 6.8e-30 103.3 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain KaiC PF06745.8 gi|435852327|ref|YP_007313913.1| - 2.4e-05 23.5 0.3 3.6e-05 22.9 0.2 1.3 1 1 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|435852327|ref|YP_007313913.1| - 0.0028 16.5 0.0 0.0073 15.1 0.0 1.6 2 0 0 2 2 2 1 PAXNEB protein CRS1_YhbY PF01985.16 gi|435852328|ref|YP_007313914.1| - 2.2e-23 82.0 2.1 2.4e-23 81.9 1.5 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Cas_Csy2 PF09614.5 gi|435852328|ref|YP_007313914.1| - 0.065 12.4 0.2 0.069 12.3 0.1 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csy2) DUF190 PF02641.10 gi|435852329|ref|YP_007313915.1| - 1.9e-24 85.4 0.4 2.2e-24 85.2 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CRCB PF02537.10 gi|435852330|ref|YP_007313916.1| - 6.6e-24 84.0 11.1 7.8e-24 83.8 7.7 1.1 1 0 0 1 1 1 1 CrcB-like protein MFS_1 PF07690.11 gi|435852330|ref|YP_007313916.1| - 0.013 14.2 9.2 0.014 14.1 6.4 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily TM_helix PF05552.7 gi|435852330|ref|YP_007313916.1| - 0.05 13.2 2.0 0.064 12.9 0.3 1.9 2 0 0 2 2 2 0 Conserved TM helix CRCB PF02537.10 gi|435852331|ref|YP_007313917.1| - 1.7e-22 79.4 13.2 1.9e-22 79.3 9.1 1.0 1 0 0 1 1 1 1 CrcB-like protein MARVEL PF01284.18 gi|435852331|ref|YP_007313917.1| - 0.089 12.6 6.6 0.09 12.5 4.0 1.3 1 1 0 1 1 1 0 Membrane-associating domain Lysis_S PF04971.7 gi|435852331|ref|YP_007313917.1| - 0.24 11.1 1.8 0.41 10.3 0.3 2.1 1 1 1 2 2 2 0 Lysis protein S MoeA_N PF03453.12 gi|435852332|ref|YP_007313918.1| - 1.4e-40 138.3 0.0 2.5e-40 137.5 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|435852332|ref|YP_007313918.1| - 2.8e-24 85.1 0.0 5e-24 84.3 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|435852332|ref|YP_007313918.1| - 3.7e-13 49.2 0.1 3.8e-12 45.9 0.0 2.5 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) ThiS PF02597.15 gi|435852333|ref|YP_007313919.1| - 2.3e-17 63.1 0.0 2.6e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 ThiS family EAV_GS PF01309.13 gi|435852334|ref|YP_007313920.1| - 0.17 11.3 0.7 0.24 10.8 0.5 1.3 1 0 0 1 1 1 0 Equine arteritis virus small envelope glycoprotein ABC2_membrane_5 PF13346.1 gi|435852334|ref|YP_007313920.1| - 1 8.5 19.3 1.2 8.4 13.4 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein SieB PF14163.1 gi|435852334|ref|YP_007313920.1| - 3.4 7.2 5.8 4.4 6.8 4.0 1.3 1 0 0 1 1 1 0 Superinfection exclusion protein B GyrI-like PF06445.10 gi|435852335|ref|YP_007313921.1| - 8.8e-24 84.2 0.1 9.8e-24 84.1 0.1 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.1 gi|435852335|ref|YP_007313921.1| - 1.3e-09 38.2 0.0 9.3e-09 35.4 0.0 1.9 1 1 0 1 1 1 1 Integron-associated effector binding protein Flavoprotein PF02441.14 gi|435852336|ref|YP_007313922.1| - 2.5e-31 108.0 0.0 3.3e-31 107.6 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein HD PF01966.17 gi|435852338|ref|YP_007313924.1| - 4e-13 49.4 4.9 2.3e-12 46.9 1.5 2.5 2 0 0 2 2 2 1 HD domain HDOD PF08668.7 gi|435852338|ref|YP_007313924.1| - 0.0013 18.0 0.0 0.0023 17.2 0.0 1.5 1 0 0 1 1 1 1 HDOD domain DUF354 PF04007.7 gi|435852338|ref|YP_007313924.1| - 0.019 13.8 0.2 0.3 9.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF354) Nuclease_act PF08133.6 gi|435852338|ref|YP_007313924.1| - 0.087 12.3 0.4 0.18 11.2 0.3 1.5 1 0 0 1 1 1 0 Anticodon nuclease activator family UPF0052 PF01933.13 gi|435852339|ref|YP_007313925.1| - 1.6e-54 185.3 0.1 2e-54 184.9 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Pribosyltran PF00156.22 gi|435852340|ref|YP_007313926.1| - 4.5e-23 81.3 1.0 6.3e-23 80.8 0.7 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|435852340|ref|YP_007313926.1| - 4.9e-05 22.6 0.2 0.00011 21.4 0.1 1.6 1 1 1 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|435852340|ref|YP_007313926.1| - 0.0062 15.8 0.0 0.009 15.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase HAS-barrel PF09378.5 gi|435852340|ref|YP_007313926.1| - 0.11 12.4 2.8 0.63 9.9 0.4 2.6 2 2 0 2 2 2 0 HAS barrel domain Diphthamide_syn PF01866.12 gi|435852341|ref|YP_007313927.1| - 5.3e-97 324.7 0.0 6.1e-97 324.5 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein PrmA PF06325.8 gi|435852342|ref|YP_007313928.1| - 1.5e-15 57.0 0.0 2e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|435852342|ref|YP_007313928.1| - 2.8e-15 56.1 0.0 4.1e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|435852342|ref|YP_007313928.1| - 3.5e-15 56.0 0.0 4.7e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435852342|ref|YP_007313928.1| - 9.4e-13 48.0 0.0 1.2e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|435852342|ref|YP_007313928.1| - 5.9e-12 46.1 0.0 8.7e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|435852342|ref|YP_007313928.1| - 2.6e-10 40.1 0.0 3.5e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|435852342|ref|YP_007313928.1| - 5.9e-08 32.9 0.0 1.2e-07 32.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|435852342|ref|YP_007313928.1| - 2.5e-07 31.0 0.1 6e-06 26.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|435852342|ref|YP_007313928.1| - 6.4e-05 22.4 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|435852342|ref|YP_007313928.1| - 9.9e-05 21.9 0.1 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.1 gi|435852342|ref|YP_007313928.1| - 0.00029 20.5 0.0 0.00036 20.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|435852342|ref|YP_007313928.1| - 0.00045 19.4 0.0 0.00066 18.8 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase FmrO PF07091.6 gi|435852342|ref|YP_007313928.1| - 0.00053 19.0 0.0 0.00069 18.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_12 PF08242.7 gi|435852342|ref|YP_007313928.1| - 0.00079 19.8 0.0 0.0015 18.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|435852342|ref|YP_007313928.1| - 0.0023 17.5 0.0 0.0034 17.0 0.0 1.5 1 0 0 1 1 1 1 Met-10+ like-protein Ubie_methyltran PF01209.13 gi|435852342|ref|YP_007313928.1| - 0.0027 16.8 0.0 0.0039 16.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|435852342|ref|YP_007313928.1| - 0.0029 17.2 0.0 0.0039 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|435852342|ref|YP_007313928.1| - 0.091 12.3 0.1 0.43 10.1 0.1 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase AviRa PF11599.3 gi|435852342|ref|YP_007313928.1| - 0.15 11.0 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa ECR1_N PF14382.1 gi|435852343|ref|YP_007313929.1| - 2.4e-09 36.3 0.0 4.2e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.4 gi|435852343|ref|YP_007313929.1| - 9.7e-05 22.2 3.7 0.00016 21.5 0.8 2.7 3 1 0 3 3 3 1 Exosome component EXOSC1/CSL4 S1 PF00575.18 gi|435852343|ref|YP_007313929.1| - 0.012 15.6 5.1 0.23 11.6 0.0 3.1 4 0 0 4 4 4 0 S1 RNA binding domain HypA PF01155.14 gi|435852343|ref|YP_007313929.1| - 0.017 14.8 3.8 0.045 13.4 2.7 1.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|435852343|ref|YP_007313929.1| - 0.031 14.0 1.1 0.06 13.1 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|435852343|ref|YP_007313929.1| - 0.042 13.6 0.9 0.096 12.5 0.6 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS91 PF14319.1 gi|435852343|ref|YP_007313929.1| - 0.043 13.3 0.5 0.073 12.5 0.4 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain Auto_anti-p27 PF06677.7 gi|435852343|ref|YP_007313929.1| - 0.093 12.5 2.7 0.17 11.6 1.9 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|435852343|ref|YP_007313929.1| - 0.2 11.4 1.2 0.39 10.4 0.9 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Ribosomal_L14 PF00238.14 gi|435852343|ref|YP_007313929.1| - 0.23 11.2 6.0 0.17 11.6 0.3 2.5 2 1 1 3 3 3 0 Ribosomal protein L14p/L23e RNA_pol_L_2 PF13656.1 gi|435852344|ref|YP_007313930.1| - 1.9e-20 72.0 1.0 2.3e-20 71.8 0.7 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|435852344|ref|YP_007313930.1| - 3.9e-08 32.2 0.1 8.3e-08 31.2 0.1 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain FMN_red PF03358.10 gi|435852345|ref|YP_007313931.1| - 2.2e-27 95.4 0.0 2.6e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|435852345|ref|YP_007313931.1| - 2.5e-09 36.9 0.0 3e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2284 PF10050.4 gi|435852345|ref|YP_007313931.1| - 0.029 13.9 0.2 0.039 13.5 0.1 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) SLA_LP_auto_ag PF05889.8 gi|435852346|ref|YP_007313932.1| - 5.6e-54 183.0 0.0 3.2e-53 180.6 0.0 1.8 2 0 0 2 2 2 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|435852346|ref|YP_007313932.1| - 8.6e-19 67.5 0.0 1.3e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|435852346|ref|YP_007313932.1| - 8.1e-09 34.8 0.0 1.1e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|435852346|ref|YP_007313932.1| - 0.00017 20.8 0.0 0.00023 20.3 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|435852346|ref|YP_007313932.1| - 0.00037 19.0 0.0 0.00062 18.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain OKR_DC_1 PF01276.15 gi|435852346|ref|YP_007313932.1| - 0.0014 17.2 0.0 0.0032 16.0 0.0 1.5 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain DegT_DnrJ_EryC1 PF01041.12 gi|435852346|ref|YP_007313932.1| - 0.0054 15.8 0.3 0.019 13.9 0.1 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|435852346|ref|YP_007313932.1| - 0.0098 14.2 0.0 0.015 13.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme MS_channel PF00924.13 gi|435852347|ref|YP_007313933.1| - 3.1e-19 69.1 0.1 3.1e-19 69.1 0.0 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel Fer2_BFD PF04324.10 gi|435852348|ref|YP_007313934.1| - 3.2e-06 27.1 4.1 9.2e-06 25.6 2.9 1.8 1 1 0 1 1 1 1 BFD-like [2Fe-2S] binding domain CTP_transf_2 PF01467.21 gi|435852350|ref|YP_007313936.1| - 3.1e-19 69.5 0.0 4e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase FrhB_FdhB_C PF04432.8 gi|435852351|ref|YP_007313937.1| - 2.9e-42 143.8 1.2 3.2e-42 143.6 0.0 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|435852351|ref|YP_007313937.1| - 9e-18 63.9 0.0 1.6e-17 63.1 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.1 gi|435852351|ref|YP_007313937.1| - 3.2e-07 30.0 7.5 3.2e-07 30.0 5.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435852351|ref|YP_007313937.1| - 4.1e-07 30.2 10.3 4.1e-07 30.2 7.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435852351|ref|YP_007313937.1| - 1.3e-06 28.5 9.0 1.3e-06 28.5 6.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435852351|ref|YP_007313937.1| - 1.5e-06 27.5 5.9 1.5e-06 27.5 4.1 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435852351|ref|YP_007313937.1| - 2.3e-05 24.3 8.5 2.3e-05 24.3 5.9 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852351|ref|YP_007313937.1| - 3e-05 24.5 4.9 0.041 14.4 0.6 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|435852351|ref|YP_007313937.1| - 0.00013 22.6 10.8 0.00013 22.6 7.5 2.7 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|435852351|ref|YP_007313937.1| - 0.00029 21.1 7.3 0.0011 19.2 5.0 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435852351|ref|YP_007313937.1| - 0.00037 20.2 11.3 0.00037 20.2 7.9 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435852351|ref|YP_007313937.1| - 0.001 18.8 5.3 0.001 18.8 3.7 2.8 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435852351|ref|YP_007313937.1| - 0.0018 18.0 5.1 0.0018 18.0 3.5 3.0 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435852351|ref|YP_007313937.1| - 0.0061 16.8 3.8 0.0061 16.8 2.6 3.1 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435852351|ref|YP_007313937.1| - 0.25 11.7 12.3 0.68 10.3 3.7 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|435852351|ref|YP_007313937.1| - 4.8 7.6 19.2 2.6 8.5 3.4 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Bac_luciferase PF00296.15 gi|435852352|ref|YP_007313938.1| - 2.7e-66 223.7 0.0 3e-66 223.6 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PHP PF02811.14 gi|435852352|ref|YP_007313938.1| - 0.025 14.3 0.1 0.034 13.9 0.0 1.5 1 1 0 1 1 1 0 PHP domain DUF2180 PF09947.4 gi|435852353|ref|YP_007313939.1| - 3e-25 87.7 10.7 3.8e-25 87.4 7.4 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Tnp_zf-ribbon_2 PF13842.1 gi|435852353|ref|YP_007313939.1| - 0.21 12.0 9.5 0.12 12.7 1.3 2.4 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon FOLN PF09289.5 gi|435852353|ref|YP_007313939.1| - 0.29 10.9 0.5 0.29 10.9 0.4 2.6 2 0 0 2 2 2 0 Follistatin/Osteonectin-like EGF domain FYVE PF01363.16 gi|435852353|ref|YP_007313939.1| - 0.35 10.7 7.1 0.61 10.0 4.9 1.5 1 1 0 1 1 1 0 FYVE zinc finger zf-RING_3 PF14369.1 gi|435852353|ref|YP_007313939.1| - 0.56 10.2 3.8 0.4 10.7 0.3 2.3 2 1 0 2 2 2 0 zinc-finger Ribosomal_S27e PF01667.12 gi|435852353|ref|YP_007313939.1| - 0.66 9.5 8.5 4.7 6.8 4.0 2.5 2 1 0 2 2 2 0 Ribosomal protein S27 zf-AN1 PF01428.11 gi|435852353|ref|YP_007313939.1| - 2.5 8.0 6.4 0.19 11.5 0.5 2.1 2 2 0 2 2 2 0 AN1-like Zinc finger Cytochrom_c3_2 PF14537.1 gi|435852353|ref|YP_007313939.1| - 8.3 6.8 6.9 23 5.4 4.8 1.7 1 1 0 1 1 1 0 Cytochrome c3 Transp_Tc5_C PF04236.10 gi|435852353|ref|YP_007313939.1| - 9.4 6.5 8.2 2.3 8.5 1.2 2.2 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain zf-BED PF02892.10 gi|435852353|ref|YP_007313939.1| - 9.4 6.0 12.0 1.6 8.5 0.5 2.8 2 2 0 2 2 2 0 BED zinc finger DUF2180 PF09947.4 gi|435852354|ref|YP_007313940.1| - 6.4e-24 83.4 5.6 7.1e-24 83.3 3.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.16 gi|435852354|ref|YP_007313940.1| - 0.13 12.2 3.8 0.25 11.2 2.7 1.6 1 1 0 1 1 1 0 FYVE zinc finger zf-RING_5 PF14634.1 gi|435852354|ref|YP_007313940.1| - 0.52 10.0 5.5 0.56 9.9 1.2 2.0 2 0 0 2 2 2 0 zinc-RING finger domain NinF PF05810.7 gi|435852354|ref|YP_007313940.1| - 1.3 8.9 4.8 6.2 6.7 0.0 2.3 2 1 0 2 2 2 0 NinF protein Transp_Tc5_C PF04236.10 gi|435852354|ref|YP_007313940.1| - 1.5 9.1 8.4 0.54 10.5 3.7 1.8 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain zf-BED PF02892.10 gi|435852354|ref|YP_007313940.1| - 1.8 8.3 9.6 4.7 7.0 0.0 2.5 2 1 0 2 2 2 0 BED zinc finger zf-C3HC4_2 PF13923.1 gi|435852354|ref|YP_007313940.1| - 3 7.9 8.7 46 4.1 4.2 2.6 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Tnp_zf-ribbon_2 PF13842.1 gi|435852354|ref|YP_007313940.1| - 4.6 7.7 10.6 0.45 10.9 3.8 1.9 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon CMD PF02627.15 gi|435852355|ref|YP_007313941.1| - 7.6e-19 67.3 0.4 1e-18 66.9 0.3 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PA26 PF04636.8 gi|435852355|ref|YP_007313941.1| - 0.0043 15.8 0.0 0.0048 15.6 0.0 1.0 1 0 0 1 1 1 1 PA26 p53-induced protein (sestrin) SapB_1 PF05184.10 gi|435852355|ref|YP_007313941.1| - 0.045 13.5 0.2 0.11 12.3 0.1 1.7 1 0 0 1 1 1 0 Saposin-like type B, region 1 Cytochrome_C554 PF13435.1 gi|435852356|ref|YP_007313942.1| - 2.6e-16 59.8 1.4 7.5e-13 48.6 0.1 2.2 1 1 1 2 2 2 2 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|435852356|ref|YP_007313942.1| - 2.1e-07 30.4 6.6 0.012 15.2 0.3 3.6 2 2 0 2 2 2 2 Cytochrome c7 Paired_CXXCH_1 PF09699.5 gi|435852356|ref|YP_007313942.1| - 0.0004 19.8 10.0 4.8 6.7 0.1 5.0 5 0 0 5 5 5 3 Doubled CXXCH motif (Paired_CXXCH_1) C1_1 PF00130.17 gi|435852356|ref|YP_007313942.1| - 0.0045 16.6 5.4 2.8 7.7 0.0 3.5 3 1 0 3 3 3 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Cytochrom_NNT PF03264.9 gi|435852356|ref|YP_007313942.1| - 0.011 15.1 11.4 0.16 11.4 0.4 3.3 2 1 1 3 3 3 0 NapC/NirT cytochrome c family, N-terminal region Cytochrom_c3_2 PF14537.1 gi|435852356|ref|YP_007313942.1| - 0.017 15.4 15.8 3.7 7.9 0.2 3.8 1 1 2 3 3 3 0 Cytochrome c3 Cytochrom_C552 PF02335.10 gi|435852356|ref|YP_007313942.1| - 0.066 11.9 9.0 0.023 13.4 2.9 2.3 2 1 0 2 2 2 0 Cytochrome c552 Cytochrome_CBB3 PF13442.1 gi|435852356|ref|YP_007313942.1| - 0.33 11.1 15.5 0.93 9.6 0.1 5.1 2 1 2 4 4 4 0 Cytochrome C oxidase, cbb3-type, subunit III GFA PF04828.9 gi|435852356|ref|YP_007313942.1| - 0.69 9.8 3.4 1.5 8.8 0.6 2.7 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Fer4 PF00037.22 gi|435852357|ref|YP_007313943.1| - 1.6e-14 52.8 15.0 7.1e-10 38.0 3.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435852357|ref|YP_007313943.1| - 1.4e-12 46.9 12.8 5.8e-09 35.4 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435852357|ref|YP_007313943.1| - 7.3e-12 45.4 6.5 9.3e-12 45.1 4.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435852357|ref|YP_007313943.1| - 4.2e-10 39.7 6.3 6.7e-10 39.0 4.3 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435852357|ref|YP_007313943.1| - 1.5e-09 37.1 12.1 2.9e-06 26.8 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435852357|ref|YP_007313943.1| - 6.5e-09 35.4 8.5 1.1e-08 34.7 6.0 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852357|ref|YP_007313943.1| - 2.7e-08 34.2 12.8 8.1e-06 26.3 0.8 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|435852357|ref|YP_007313943.1| - 6.2e-08 32.3 6.9 7.6e-08 32.0 4.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435852357|ref|YP_007313943.1| - 4.4e-07 30.5 7.5 0.00018 22.1 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|435852357|ref|YP_007313943.1| - 8e-07 29.3 8.2 0.0002 21.6 0.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435852357|ref|YP_007313943.1| - 2.4e-06 27.4 7.9 0.00012 22.0 5.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435852357|ref|YP_007313943.1| - 5.7e-06 26.2 2.9 5.7e-06 26.2 2.0 2.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|435852357|ref|YP_007313943.1| - 6.1e-06 26.5 12.6 0.0066 16.8 0.7 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|435852357|ref|YP_007313943.1| - 6.3e-06 26.3 14.8 0.0002 21.6 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|435852357|ref|YP_007313943.1| - 3e-05 24.3 8.0 0.00087 19.6 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|435852357|ref|YP_007313943.1| - 0.0035 17.2 2.6 0.0099 15.7 1.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|435852357|ref|YP_007313943.1| - 0.05 13.4 6.9 0.51 10.1 4.8 2.6 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster FMN_red PF03358.10 gi|435852358|ref|YP_007313944.1| - 3.7e-30 104.4 0.0 4.8e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|435852358|ref|YP_007313944.1| - 2.5e-08 33.6 0.0 4e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Fer4_4 PF12800.2 gi|435852358|ref|YP_007313944.1| - 1.2 9.6 3.9 0.41 11.1 0.7 1.7 2 0 0 2 2 2 0 4Fe-4S binding domain NAD_binding_1 PF00175.16 gi|435852359|ref|YP_007313945.1| - 8.5e-21 74.5 0.0 1.2e-20 74.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|435852359|ref|YP_007313945.1| - 1.4e-15 57.1 0.0 2.3e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|435852359|ref|YP_007313945.1| - 1.7e-06 28.0 0.1 4.5e-05 23.4 0.0 2.2 1 1 1 2 2 2 1 Ferric reductase NAD binding domain FAD_binding_8 PF08022.7 gi|435852359|ref|YP_007313945.1| - 0.051 13.4 0.0 0.23 11.3 0.0 2.1 1 1 0 1 1 1 0 FAD-binding domain Flavoprotein PF02441.14 gi|435852360|ref|YP_007313946.1| - 1.6e-20 73.1 0.0 2e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein NAD_binding_5 PF07994.7 gi|435852362|ref|YP_007313948.1| - 4.4e-61 206.9 0.0 1.8e-60 204.9 0.0 1.7 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|435852362|ref|YP_007313948.1| - 8.7e-35 118.9 0.0 1.6e-34 118.0 0.0 1.5 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Rubrerythrin PF02915.12 gi|435852363|ref|YP_007313949.1| - 3.3e-13 50.1 7.7 2.5e-06 27.8 0.3 2.1 2 0 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.1 gi|435852363|ref|YP_007313949.1| - 3.7e-08 33.4 1.1 0.0014 18.5 0.3 2.2 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.5 gi|435852363|ref|YP_007313949.1| - 0.001 19.2 0.9 0.053 13.7 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Amidohydro_1 PF01979.15 gi|435852363|ref|YP_007313949.1| - 0.098 12.2 0.1 0.099 12.2 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase family HSCB_C PF07743.8 gi|435852363|ref|YP_007313949.1| - 0.24 11.8 2.1 21 5.6 0.0 2.7 3 1 0 3 3 3 0 HSCB C-terminal oligomerisation domain YozD PF14162.1 gi|435852363|ref|YP_007313949.1| - 0.41 10.7 2.3 0.42 10.7 0.4 2.0 2 0 0 2 2 2 0 YozD-like protein Lactamase_B PF00753.22 gi|435852364|ref|YP_007313950.1| - 1.5e-22 80.1 0.0 2.2e-22 79.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|435852364|ref|YP_007313950.1| - 7e-14 52.0 0.0 1.2e-13 51.2 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|435852364|ref|YP_007313950.1| - 0.0016 18.0 0.1 0.0042 16.6 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PGM_PMM_I PF02878.11 gi|435852364|ref|YP_007313950.1| - 0.058 12.8 0.0 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FeThRed_B PF02943.10 gi|435852365|ref|YP_007313951.1| - 2.1e-16 59.5 2.2 2.5e-16 59.3 1.5 1.0 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain PfkB PF00294.19 gi|435852366|ref|YP_007313952.1| - 2.9e-09 36.4 0.0 3e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase E1-E2_ATPase PF00122.15 gi|435852367|ref|YP_007313953.1| - 2.3e-70 236.2 7.0 2.3e-70 236.2 4.8 3.5 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|435852367|ref|YP_007313953.1| - 7e-40 136.4 10.7 7e-40 136.4 7.4 2.7 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|435852367|ref|YP_007313953.1| - 1.1e-37 130.5 0.0 3.4e-37 128.9 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|435852367|ref|YP_007313953.1| - 2.4e-23 81.9 0.0 5.7e-23 80.6 0.0 1.7 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|435852367|ref|YP_007313953.1| - 7.6e-23 81.6 0.1 1.7e-22 80.5 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|435852367|ref|YP_007313953.1| - 2.5e-17 62.1 1.3 4.8e-17 61.1 0.1 2.2 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|435852367|ref|YP_007313953.1| - 1.5e-06 28.0 0.9 0.022 14.3 0.0 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|435852367|ref|YP_007313953.1| - 0.0031 17.7 0.0 0.0091 16.2 0.0 1.8 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF1295 PF06966.7 gi|435852367|ref|YP_007313953.1| - 0.093 12.0 1.9 0.12 11.6 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1295) Peptidase_S8 PF00082.17 gi|435852368|ref|YP_007313954.1| - 2e-58 197.7 17.6 3.4e-58 197.0 12.2 1.4 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.11 gi|435852368|ref|YP_007313954.1| - 2e-07 31.5 0.0 7.3e-07 29.6 0.0 2.0 2 0 0 2 2 2 1 Peptidase inhibitor I9 DUF4198 PF10670.4 gi|435852368|ref|YP_007313954.1| - 0.031 14.2 0.9 0.068 13.1 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.1 gi|435852368|ref|YP_007313954.1| - 0.11 12.5 9.2 0.045 13.8 2.2 3.0 3 0 0 3 3 3 0 Carboxypeptidase regulatory-like domain FlgD_ig PF13860.1 gi|435852368|ref|YP_007313954.1| - 0.21 11.3 3.5 1.8 8.3 0.0 3.4 2 1 0 3 3 3 0 FlgD Ig-like domain FUR PF01475.14 gi|435852369|ref|YP_007313955.1| - 1.9e-30 105.2 0.0 2.5e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family RepL PF05732.6 gi|435852369|ref|YP_007313955.1| - 0.023 13.9 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_20 PF12840.2 gi|435852369|ref|YP_007313955.1| - 0.054 13.3 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain KfrA_N PF11740.3 gi|435852369|ref|YP_007313955.1| - 0.083 13.3 0.0 0.12 12.8 0.0 1.2 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term HTH_5 PF01022.15 gi|435852370|ref|YP_007313956.1| - 2.5e-14 52.6 0.7 3.9e-14 52.0 0.5 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|435852370|ref|YP_007313956.1| - 4.2e-11 42.4 0.0 5.5e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|435852370|ref|YP_007313956.1| - 0.00039 20.1 0.1 0.00051 19.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|435852370|ref|YP_007313956.1| - 0.0016 18.4 0.1 0.0024 17.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|435852370|ref|YP_007313956.1| - 0.0031 17.5 0.0 0.0049 16.9 0.0 1.4 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) MarR_2 PF12802.2 gi|435852370|ref|YP_007313956.1| - 0.024 14.2 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 MarR family PadR PF03551.9 gi|435852370|ref|YP_007313956.1| - 0.027 14.2 0.3 0.047 13.4 0.2 1.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|435852370|ref|YP_007313956.1| - 0.033 14.5 0.0 0.057 13.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|435852370|ref|YP_007313956.1| - 0.064 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Mrr N-terminal domain Rio2_N PF09202.6 gi|435852370|ref|YP_007313956.1| - 0.13 12.3 0.4 0.24 11.4 0.2 1.5 1 1 0 1 1 1 0 Rio2, N-terminal HTH_12 PF08461.5 gi|435852370|ref|YP_007313956.1| - 0.13 12.0 0.1 0.24 11.1 0.0 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain NikR_C PF08753.6 gi|435852371|ref|YP_007313957.1| - 1.8e-32 111.0 2.8 2.5e-32 110.6 2.0 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|435852371|ref|YP_007313957.1| - 3.2e-06 26.8 0.0 1e-05 25.2 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family SAICAR_synt PF01259.13 gi|435852372|ref|YP_007313958.1| - 4.1e-55 186.5 0.7 4.7e-55 186.4 0.5 1.0 1 0 0 1 1 1 1 SAICAR synthetase NAD_binding_8 PF13450.1 gi|435852373|ref|YP_007313959.1| - 4.5e-16 58.6 0.1 8.8e-16 57.6 0.1 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|435852373|ref|YP_007313959.1| - 2.8e-15 56.3 0.0 8.3e-14 51.4 0.0 2.5 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.19 gi|435852373|ref|YP_007313959.1| - 5.2e-10 38.7 0.3 2.6e-07 29.8 0.2 2.8 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|435852373|ref|YP_007313959.1| - 5.4e-08 32.1 0.4 1.9e-06 27.0 0.4 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|435852373|ref|YP_007313959.1| - 6.4e-07 28.7 0.3 1.4e-06 27.6 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|435852373|ref|YP_007313959.1| - 7e-07 28.6 0.0 2.1e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|435852373|ref|YP_007313959.1| - 2.5e-06 26.2 0.7 2.5e-05 22.9 0.1 2.5 2 1 1 3 3 3 1 HI0933-like protein GDI PF00996.13 gi|435852373|ref|YP_007313959.1| - 3.6e-06 25.5 2.6 9.9e-06 24.1 0.3 2.3 2 0 0 2 2 2 1 GDP dissociation inhibitor Thi4 PF01946.12 gi|435852373|ref|YP_007313959.1| - 4.4e-06 25.9 0.7 9e-06 24.9 0.1 1.8 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|435852373|ref|YP_007313959.1| - 7.2e-05 23.1 1.0 0.00024 21.4 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|435852373|ref|YP_007313959.1| - 0.0033 17.4 0.1 0.0066 16.5 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|435852373|ref|YP_007313959.1| - 0.0043 16.9 0.0 0.0083 16.0 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|435852373|ref|YP_007313959.1| - 0.029 13.2 0.7 0.075 11.8 0.1 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|435852373|ref|YP_007313959.1| - 0.087 11.7 0.1 0.14 11.0 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein PhoU_div PF01865.11 gi|435852374|ref|YP_007313960.1| - 2.4e-53 180.5 0.9 2.6e-53 180.3 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|435852374|ref|YP_007313960.1| - 8.8e-06 26.0 0.8 3.1e-05 24.3 0.1 2.0 2 0 0 2 2 2 1 PhoU domain CorA PF01544.13 gi|435852374|ref|YP_007313960.1| - 0.02 13.9 2.2 0.036 13.0 1.5 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein HSBP1 PF06825.7 gi|435852374|ref|YP_007313960.1| - 2 8.0 6.2 0.23 11.0 0.4 2.4 3 0 0 3 3 3 0 Heat shock factor binding protein 1 PHO4 PF01384.15 gi|435852375|ref|YP_007313961.1| - 5.5e-106 353.8 34.2 7e-106 353.5 23.7 1.1 1 0 0 1 1 1 1 Phosphate transporter family DUF3318 PF11780.3 gi|435852375|ref|YP_007313961.1| - 1.2 8.6 3.7 19 4.8 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3318) DUF650 PF04894.7 gi|435852376|ref|YP_007313962.1| - 1.4e-94 316.6 0.0 1.7e-94 316.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|435852376|ref|YP_007313962.1| - 1.1e-37 128.0 0.0 1.7e-37 127.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Sigma70_r4 PF04545.11 gi|435852377|ref|YP_007313963.1| - 0.00014 21.1 0.0 0.00022 20.4 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|435852377|ref|YP_007313963.1| - 0.00071 19.3 0.0 0.0025 17.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.1 gi|435852377|ref|YP_007313963.1| - 0.0026 17.3 0.0 0.0055 16.3 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|435852377|ref|YP_007313963.1| - 0.003 17.3 0.1 0.0056 16.4 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|435852377|ref|YP_007313963.1| - 0.0032 16.8 0.0 0.0063 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|435852377|ref|YP_007313963.1| - 0.0081 15.8 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|435852377|ref|YP_007313963.1| - 0.03 13.9 0.1 0.056 13.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|435852377|ref|YP_007313963.1| - 0.04 13.4 0.1 0.08 12.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|435852377|ref|YP_007313963.1| - 0.044 13.6 0.1 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_NinH PF06322.6 gi|435852377|ref|YP_007313963.1| - 0.056 13.0 0.1 0.14 11.8 0.0 1.9 1 1 1 2 2 2 0 Phage NinH protein HTH_19 PF12844.2 gi|435852377|ref|YP_007313963.1| - 0.091 12.8 0.0 0.27 11.3 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|435852377|ref|YP_007313963.1| - 0.096 12.1 0.1 0.29 10.6 0.0 1.8 1 1 1 2 2 2 0 Sigma-70, region 4 GerE PF00196.14 gi|435852377|ref|YP_007313963.1| - 0.12 11.6 0.0 0.27 10.5 0.0 1.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_31 PF13560.1 gi|435852377|ref|YP_007313963.1| - 0.14 12.4 0.0 0.18 11.9 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Crp PF00325.15 gi|435852377|ref|YP_007313963.1| - 0.3 10.5 1.9 0.61 9.6 0.0 2.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family NifU_N PF01592.11 gi|435852378|ref|YP_007313964.1| - 3.2e-43 146.6 0.1 3.5e-43 146.5 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Aminotran_5 PF00266.14 gi|435852379|ref|YP_007313965.1| - 8.8e-88 294.5 0.1 1.1e-87 294.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|435852379|ref|YP_007313965.1| - 0.0073 15.3 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF4319 PF14203.1 gi|435852379|ref|YP_007313965.1| - 0.55 9.8 4.2 21 4.7 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4319) SUI1 PF01253.17 gi|435852380|ref|YP_007313966.1| - 1.1e-23 82.7 0.1 1.3e-23 82.5 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 zf-rbx1 PF12678.2 gi|435852380|ref|YP_007313966.1| - 0.083 13.0 0.2 0.16 12.0 0.2 1.4 1 0 0 1 1 1 0 RING-H2 zinc finger DTW PF03942.10 gi|435852380|ref|YP_007313966.1| - 0.17 11.0 1.9 0.23 10.6 1.3 1.2 1 0 0 1 1 1 0 DTW domain DUF192 PF02643.10 gi|435852381|ref|YP_007313967.1| - 5.6e-22 77.4 0.0 6.2e-22 77.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 AIRS PF00586.19 gi|435852382|ref|YP_007313968.1| - 2.6e-44 149.4 1.0 1.5e-24 86.0 0.1 3.6 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|435852382|ref|YP_007313968.1| - 2.9e-43 147.5 3.5 1e-28 100.2 0.1 2.2 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain DUF378 PF04070.7 gi|435852383|ref|YP_007313969.1| - 5.2e-19 67.6 9.2 5.6e-19 67.5 6.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF378) YoqO PF14037.1 gi|435852383|ref|YP_007313969.1| - 0.059 13.4 1.5 0.065 13.3 1.0 1.1 1 0 0 1 1 1 0 YoqO-like protein Ost4 PF10215.4 gi|435852383|ref|YP_007313969.1| - 0.25 10.8 0.1 0.25 10.8 0.1 2.3 3 0 0 3 3 3 0 Oligosaccaryltransferase PsbT PF01405.12 gi|435852383|ref|YP_007313969.1| - 7.9 6.1 6.2 2.9 7.5 1.3 2.2 2 0 0 2 2 2 0 Photosystem II reaction centre T protein Fer4_16 PF13484.1 gi|435852384|ref|YP_007313970.1| - 0.00014 22.4 2.8 0.0003 21.4 1.9 1.6 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|435852384|ref|YP_007313970.1| - 0.00022 21.5 3.7 0.00072 19.8 2.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435852384|ref|YP_007313970.1| - 0.0075 16.5 6.4 0.082 13.1 4.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435852384|ref|YP_007313970.1| - 0.015 14.8 0.4 0.015 14.8 0.3 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|435852384|ref|YP_007313970.1| - 0.017 15.6 9.9 0.2 12.3 1.8 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|435852384|ref|YP_007313970.1| - 0.058 13.2 0.8 0.058 13.2 0.6 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|435852384|ref|YP_007313970.1| - 0.09 12.8 1.9 2.6 8.1 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Antistasin PF02822.9 gi|435852384|ref|YP_007313970.1| - 0.24 11.7 5.9 3.9 7.8 0.3 2.4 2 0 0 2 2 2 0 Antistasin family Fer4_17 PF13534.1 gi|435852384|ref|YP_007313970.1| - 0.4 11.0 4.4 1.6 9.1 2.8 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435852384|ref|YP_007313970.1| - 0.41 10.5 5.5 2.9 7.8 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435852384|ref|YP_007313970.1| - 0.89 9.4 6.9 11 5.8 0.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA PF00004.24 gi|435852385|ref|YP_007313971.1| - 5.7e-101 333.9 0.0 1.4e-49 167.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|435852385|ref|YP_007313971.1| - 1.4e-31 108.3 0.0 5e-31 106.5 0.0 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|435852385|ref|YP_007313971.1| - 2.3e-16 60.1 0.0 2.1e-07 30.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|435852385|ref|YP_007313971.1| - 1.7e-14 53.7 0.4 3.5e-06 26.7 0.0 3.3 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|435852385|ref|YP_007313971.1| - 1.5e-13 50.3 0.0 3.1e-06 26.4 0.0 3.0 2 2 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|435852385|ref|YP_007313971.1| - 7.7e-13 48.7 0.2 0.00067 19.8 0.0 4.1 2 2 2 4 4 4 2 AAA domain AAA_16 PF13191.1 gi|435852385|ref|YP_007313971.1| - 1.6e-12 47.8 0.1 9.5e-05 22.4 0.0 3.4 3 0 0 3 3 3 2 AAA ATPase domain AAA_14 PF13173.1 gi|435852385|ref|YP_007313971.1| - 2.1e-12 47.0 0.0 2.5e-06 27.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|435852385|ref|YP_007313971.1| - 7.2e-12 44.7 0.1 3.8e-11 42.4 0.1 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_17 PF13207.1 gi|435852385|ref|YP_007313971.1| - 2.2e-11 44.6 0.1 0.00042 21.1 0.1 3.1 2 1 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|435852385|ref|YP_007313971.1| - 7.6e-10 38.2 0.0 0.00081 18.5 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin TIP49 PF06068.8 gi|435852385|ref|YP_007313971.1| - 7.3e-09 34.8 0.0 0.00039 19.2 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus AAA_19 PF13245.1 gi|435852385|ref|YP_007313971.1| - 1.1e-08 34.7 0.2 0.0055 16.4 0.0 3.0 2 0 0 2 2 2 2 Part of AAA domain AAA_33 PF13671.1 gi|435852385|ref|YP_007313971.1| - 1.6e-08 34.5 0.0 0.0055 16.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|435852385|ref|YP_007313971.1| - 3e-08 33.2 0.0 0.0058 16.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|435852385|ref|YP_007313971.1| - 5.2e-08 33.2 0.0 0.011 16.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|435852385|ref|YP_007313971.1| - 2.6e-07 30.2 7.6 0.05 12.9 0.1 4.5 2 2 2 4 4 4 2 AAA domain Sigma54_activat PF00158.21 gi|435852385|ref|YP_007313971.1| - 2.9e-07 30.1 0.0 0.098 12.1 0.0 3.6 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_28 PF13521.1 gi|435852385|ref|YP_007313971.1| - 4.4e-07 29.9 0.0 0.018 14.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|435852385|ref|YP_007313971.1| - 1.2e-06 28.3 0.2 0.0071 16.0 0.0 3.4 2 1 1 3 3 3 1 Archaeal ATPase Mg_chelatase PF01078.16 gi|435852385|ref|YP_007313971.1| - 1.8e-06 27.3 0.2 0.058 12.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|435852385|ref|YP_007313971.1| - 4.3e-06 26.8 0.0 0.1 12.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|435852385|ref|YP_007313971.1| - 4.6e-06 26.7 0.0 0.12 12.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase ATP-synt_ab PF00006.20 gi|435852385|ref|YP_007313971.1| - 1.2e-05 24.9 0.1 0.026 14.0 0.0 2.6 2 1 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain ABC_tran PF00005.22 gi|435852385|ref|YP_007313971.1| - 1.4e-05 25.4 0.0 0.24 11.6 0.0 2.7 3 0 0 3 3 2 2 ABC transporter PhoH PF02562.11 gi|435852385|ref|YP_007313971.1| - 2.5e-05 23.6 0.0 0.38 9.9 0.0 3.2 3 0 0 3 3 3 2 PhoH-like protein KaiC PF06745.8 gi|435852385|ref|YP_007313971.1| - 2.8e-05 23.3 0.9 0.36 9.9 0.0 3.6 2 1 0 3 3 3 1 KaiC AAA_3 PF07726.6 gi|435852385|ref|YP_007313971.1| - 4.9e-05 22.9 0.0 0.26 10.9 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|435852385|ref|YP_007313971.1| - 0.00017 21.2 0.1 0.34 10.4 0.1 2.5 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.17 gi|435852385|ref|YP_007313971.1| - 0.00018 20.4 0.0 0.16 10.7 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain DUF2075 PF09848.4 gi|435852385|ref|YP_007313971.1| - 0.00021 20.4 0.0 0.37 9.6 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Guanylate_kin PF00625.16 gi|435852385|ref|YP_007313971.1| - 0.00029 20.3 0.5 2.2 7.6 0.0 4.1 2 2 2 4 4 4 1 Guanylate kinase Parvo_NS1 PF01057.12 gi|435852385|ref|YP_007313971.1| - 0.0003 19.7 0.1 0.26 10.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ResIII PF04851.10 gi|435852385|ref|YP_007313971.1| - 0.00042 20.2 0.0 0.59 9.9 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DUF815 PF05673.8 gi|435852385|ref|YP_007313971.1| - 0.00055 18.9 0.0 0.74 8.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Bac_DnaA PF00308.13 gi|435852385|ref|YP_007313971.1| - 0.00086 19.0 0.0 0.17 11.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein NTPase_1 PF03266.10 gi|435852385|ref|YP_007313971.1| - 0.0013 18.4 4.1 3.8 7.2 0.0 4.3 4 2 1 5 5 3 0 NTPase AAA_11 PF13086.1 gi|435852385|ref|YP_007313971.1| - 0.0013 18.3 0.0 0.95 8.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain SKI PF01202.17 gi|435852385|ref|YP_007313971.1| - 0.0015 18.4 0.0 1.6 8.6 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase NACHT PF05729.7 gi|435852385|ref|YP_007313971.1| - 0.0015 18.2 0.1 3.2 7.3 0.0 3.6 4 0 0 4 4 4 0 NACHT domain AAA_30 PF13604.1 gi|435852385|ref|YP_007313971.1| - 0.0018 17.8 0.3 2.5 7.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain T2SE PF00437.15 gi|435852385|ref|YP_007313971.1| - 0.0044 15.9 0.0 1.2 7.9 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein Viral_helicase1 PF01443.13 gi|435852385|ref|YP_007313971.1| - 0.0046 16.5 0.0 0.64 9.4 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Vps4_C PF09336.5 gi|435852385|ref|YP_007313971.1| - 0.0053 16.6 0.0 8.9 6.2 0.0 3.5 3 0 0 3 3 3 0 Vps4 C terminal oligomerisation domain Cytidylate_kin2 PF13189.1 gi|435852385|ref|YP_007313971.1| - 0.0059 16.5 0.1 3.5 7.5 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family KAP_NTPase PF07693.9 gi|435852385|ref|YP_007313971.1| - 0.035 13.0 0.5 1.4 7.8 0.0 2.9 2 2 1 3 3 3 0 KAP family P-loop domain KTI12 PF08433.5 gi|435852385|ref|YP_007313971.1| - 0.039 13.1 0.0 7.7 5.6 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 IPT PF01745.11 gi|435852385|ref|YP_007313971.1| - 0.044 12.9 0.2 2.8 7.0 0.0 2.9 3 0 0 3 3 2 0 Isopentenyl transferase UPF0079 PF02367.12 gi|435852385|ref|YP_007313971.1| - 0.048 13.2 0.5 12 5.5 0.0 3.0 2 1 1 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 Torsin PF06309.6 gi|435852385|ref|YP_007313971.1| - 0.054 13.3 0.0 6.7 6.6 0.0 2.4 2 0 0 2 2 2 0 Torsin AAA_23 PF13476.1 gi|435852385|ref|YP_007313971.1| - 0.21 11.9 0.0 7.5 6.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain PRC PF05239.11 gi|435852386|ref|YP_007313972.1| - 1.2e-12 47.4 0.1 1.5e-12 47.2 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain Hydrolase_3 PF08282.7 gi|435852387|ref|YP_007313973.1| - 1.7e-27 96.5 0.1 1.4e-18 67.4 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|435852387|ref|YP_007313973.1| - 7.3e-08 32.0 0.0 9.7e-07 28.3 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|435852387|ref|YP_007313973.1| - 5.7e-07 30.1 4.7 5.7e-05 23.6 0.5 3.3 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|435852387|ref|YP_007313973.1| - 1.6e-06 28.4 1.2 2.2e-05 24.6 0.5 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|435852387|ref|YP_007313973.1| - 0.13 12.5 0.1 0.49 10.6 0.0 2.0 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Rad51 PF08423.6 gi|435852388|ref|YP_007313974.1| - 3.7e-88 294.7 0.0 4.4e-88 294.5 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|435852388|ref|YP_007313974.1| - 1e-12 47.9 2.8 2.4e-12 46.8 0.7 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|435852388|ref|YP_007313974.1| - 1.1e-10 41.2 0.0 1.7e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|435852388|ref|YP_007313974.1| - 6.1e-10 38.6 0.0 2.3e-07 30.2 0.0 2.3 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|435852388|ref|YP_007313974.1| - 2.6e-08 33.2 0.0 3.7e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|435852388|ref|YP_007313974.1| - 2.6e-05 24.0 0.4 6.9e-05 22.6 0.3 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|435852388|ref|YP_007313974.1| - 0.0003 20.3 0.6 0.13 12.0 0.3 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|435852388|ref|YP_007313974.1| - 0.00041 19.8 0.0 0.0019 17.6 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda AAA_22 PF13401.1 gi|435852388|ref|YP_007313974.1| - 0.0021 18.1 0.1 0.006 16.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|435852388|ref|YP_007313974.1| - 0.0022 17.6 0.0 0.0091 15.6 0.0 1.9 2 0 0 2 2 2 1 NACHT domain Cdd1 PF11731.3 gi|435852388|ref|YP_007313974.1| - 0.0026 17.6 0.0 0.0085 15.9 0.0 1.9 2 0 0 2 2 1 1 Pathogenicity locus AAA_24 PF13479.1 gi|435852388|ref|YP_007313974.1| - 0.0035 16.9 0.0 0.0074 15.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain CobU PF02283.11 gi|435852388|ref|YP_007313974.1| - 0.021 14.2 0.1 0.081 12.3 0.1 1.9 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Arch_ATPase PF01637.13 gi|435852388|ref|YP_007313974.1| - 0.026 14.2 0.0 0.036 13.7 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase DUF4332 PF14229.1 gi|435852388|ref|YP_007313974.1| - 0.034 14.1 0.2 0.084 12.8 0.0 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4332) ATP-synt_ab PF00006.20 gi|435852388|ref|YP_007313974.1| - 0.036 13.5 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|435852388|ref|YP_007313974.1| - 0.038 14.1 0.1 0.2 11.8 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|435852388|ref|YP_007313974.1| - 0.08 11.8 0.1 0.1 11.5 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CTP_transf_2 PF01467.21 gi|435852389|ref|YP_007313975.1| - 7.5e-11 42.3 0.1 1e-10 41.8 0.1 1.1 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|435852389|ref|YP_007313975.1| - 0.00088 18.9 0.0 0.0038 16.8 0.0 1.9 2 0 0 2 2 2 1 FAD synthetase DUF4351 PF14261.1 gi|435852390|ref|YP_007313976.1| - 0.00012 21.8 4.4 0.001 18.8 0.1 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4351) AP_endonuc_2 PF01261.19 gi|435852391|ref|YP_007313977.1| - 8.3e-14 51.3 0.0 1e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel SPOUT_MTase_2 PF14419.1 gi|435852391|ref|YP_007313977.1| - 0.095 11.8 0.0 0.3 10.2 0.0 1.8 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP ABC_tran PF00005.22 gi|435852392|ref|YP_007313978.1| - 3.4e-30 105.1 0.0 5.8e-30 104.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435852392|ref|YP_007313978.1| - 2e-14 54.2 0.3 2.6e-08 34.1 0.0 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|435852392|ref|YP_007313978.1| - 2.6e-06 26.8 0.0 1.1e-05 24.7 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|435852392|ref|YP_007313978.1| - 5.1e-05 22.7 0.1 0.0001 21.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|435852392|ref|YP_007313978.1| - 8.2e-05 21.8 0.0 0.0037 16.3 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.1 gi|435852392|ref|YP_007313978.1| - 0.0024 16.4 0.6 1.1 7.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain MMR_HSR1 PF01926.18 gi|435852392|ref|YP_007313978.1| - 0.04 13.8 0.0 0.12 12.2 0.0 2.0 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|435852392|ref|YP_007313978.1| - 0.044 12.9 0.0 0.097 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|435852392|ref|YP_007313978.1| - 0.076 12.9 0.1 0.28 11.1 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|435852392|ref|YP_007313978.1| - 0.076 13.3 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|435852392|ref|YP_007313978.1| - 0.13 11.6 0.1 0.36 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain CbiQ PF02361.11 gi|435852393|ref|YP_007313979.1| - 3.2e-36 125.0 8.6 4.8e-36 124.4 6.0 1.2 1 0 0 1 1 1 1 Cobalt transport protein CbiN PF02553.10 gi|435852394|ref|YP_007313980.1| - 1.3e-20 73.1 0.4 1.6e-20 72.8 0.3 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN Phage_Coat_B PF05356.6 gi|435852394|ref|YP_007313980.1| - 0.039 13.6 0.8 0.081 12.6 0.5 1.5 1 0 0 1 1 1 0 Phage Coat protein B DUF1206 PF06724.6 gi|435852394|ref|YP_007313980.1| - 0.11 12.2 2.0 0.29 10.9 0.2 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) Transgly_assoc PF04226.8 gi|435852394|ref|YP_007313980.1| - 9 6.4 7.6 2.8 8.0 1.4 2.3 2 1 1 3 3 3 0 Transglycosylase associated protein CbiM PF01891.11 gi|435852395|ref|YP_007313981.1| - 7.4e-54 182.4 22.3 8.4e-54 182.2 15.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF4234 PF14018.1 gi|435852395|ref|YP_007313981.1| - 4.9 6.9 9.0 1.5 8.6 1.6 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4234) TP_methylase PF00590.15 gi|435852396|ref|YP_007313982.1| - 6e-24 84.9 0.0 1.2e-23 83.9 0.0 1.5 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.12 gi|435852397|ref|YP_007313983.1| - 2.4e-50 170.9 2.5 3.5e-50 170.3 1.7 1.2 1 0 0 1 1 1 1 CbiD DNA_mis_repair PF01119.14 gi|435852398|ref|YP_007313984.1| - 2.6e-38 130.1 0.0 4.6e-38 129.3 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.6 gi|435852398|ref|YP_007313984.1| - 9.5e-37 125.7 0.0 2e-36 124.7 0.0 1.5 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.1 gi|435852398|ref|YP_007313984.1| - 6.6e-15 54.9 0.6 1.5e-14 53.8 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|435852398|ref|YP_007313984.1| - 2e-11 43.6 0.8 2.1e-10 40.3 0.1 2.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YokU PF14122.1 gi|435852398|ref|YP_007313984.1| - 0.005 16.5 0.0 0.014 15.1 0.0 1.7 1 0 0 1 1 1 1 YokU-like protein LMWSLP_N PF12211.3 gi|435852398|ref|YP_007313984.1| - 0.035 13.9 1.1 0.21 11.3 0.1 2.1 2 0 0 2 2 2 0 Low molecular weight S layer protein N terminal MutS_V PF00488.16 gi|435852399|ref|YP_007313985.1| - 3.6e-98 327.6 0.0 6.2e-98 326.8 0.0 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|435852399|ref|YP_007313985.1| - 1.9e-51 174.7 0.2 4e-51 173.7 0.1 1.6 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|435852399|ref|YP_007313985.1| - 1e-42 144.7 0.0 2.3e-42 143.5 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|435852399|ref|YP_007313985.1| - 1.3e-31 108.5 0.5 3.2e-31 107.3 0.3 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|435852399|ref|YP_007313985.1| - 1e-26 93.6 0.0 2.5e-26 92.3 0.0 1.7 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|435852399|ref|YP_007313985.1| - 0.004 16.6 0.1 0.015 14.8 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|435852399|ref|YP_007313985.1| - 0.034 14.4 0.2 0.16 12.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain MoeA_N PF03453.12 gi|435852400|ref|YP_007313986.1| - 1.6e-46 157.6 0.6 2.6e-46 156.9 0.4 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.2 gi|435852400|ref|YP_007313986.1| - 3.5e-44 150.0 0.0 6e-44 149.3 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoCF_biosynth PF00994.19 gi|435852400|ref|YP_007313986.1| - 7.8e-30 103.1 0.2 2.2e-29 101.7 0.1 1.8 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|435852400|ref|YP_007313986.1| - 6.2e-14 51.7 0.0 1.7e-13 50.2 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) Phosphonate-bd PF12974.2 gi|435852400|ref|YP_007313986.1| - 0.00069 19.0 0.0 0.0017 17.7 0.0 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|435852400|ref|YP_007313986.1| - 0.0015 18.1 0.0 0.0052 16.3 0.0 1.8 1 1 0 1 1 1 1 NMT1/THI5 like RDD PF06271.7 gi|435852401|ref|YP_007313987.1| - 0.41 10.5 3.1 0.53 10.1 2.2 1.1 1 0 0 1 1 1 0 RDD family Aminotran_4 PF01063.14 gi|435852402|ref|YP_007313988.1| - 5.9e-51 173.1 0.0 6.8e-51 172.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV URO-D PF01208.12 gi|435852403|ref|YP_007313989.1| - 1.7e-60 204.8 0.0 1.9e-60 204.6 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) ABC2_membrane PF01061.19 gi|435852404|ref|YP_007313990.1| - 7e-42 142.9 22.9 7e-42 142.9 15.9 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|435852404|ref|YP_007313990.1| - 8.7e-17 61.1 32.7 8.7e-17 61.1 22.7 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|435852404|ref|YP_007313990.1| - 5.6e-05 22.4 30.4 8e-05 21.9 21.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|435852404|ref|YP_007313990.1| - 0.011 14.6 23.6 0.036 12.9 16.4 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|435852405|ref|YP_007313991.1| - 9.5e-34 116.6 0.0 1.9e-33 115.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435852405|ref|YP_007313991.1| - 9.8e-17 61.8 0.1 9.3e-15 55.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|435852405|ref|YP_007313991.1| - 1.1e-07 31.3 0.8 0.00026 20.1 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|435852405|ref|YP_007313991.1| - 5.8e-06 26.7 1.6 1.3e-05 25.5 1.1 1.8 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|435852405|ref|YP_007313991.1| - 1.5e-05 25.3 0.8 2.7e-05 24.5 0.1 1.8 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA PF00004.24 gi|435852405|ref|YP_007313991.1| - 3e-05 24.2 0.1 0.00065 19.9 0.1 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|435852405|ref|YP_007313991.1| - 0.00032 20.0 0.4 0.0044 16.2 0.0 2.6 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|435852405|ref|YP_007313991.1| - 0.00035 20.0 0.2 0.00066 19.1 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|435852405|ref|YP_007313991.1| - 0.0024 18.0 1.2 0.01 15.9 0.9 2.0 1 1 0 1 1 1 1 AAA domain G-alpha PF00503.15 gi|435852405|ref|YP_007313991.1| - 0.013 14.2 0.1 0.016 13.8 0.1 1.2 1 0 0 1 1 1 0 G-protein alpha subunit SRP54 PF00448.17 gi|435852405|ref|YP_007313991.1| - 0.014 14.8 0.0 0.033 13.6 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Nbl1_Borealin_N PF10444.4 gi|435852405|ref|YP_007313991.1| - 0.015 14.6 0.1 0.05 12.9 0.1 1.9 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal IstB_IS21 PF01695.12 gi|435852405|ref|YP_007313991.1| - 0.022 14.2 0.1 5.1 6.4 0.0 2.8 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|435852405|ref|YP_007313991.1| - 0.074 12.4 0.5 1.5 8.1 0.3 2.4 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|435852405|ref|YP_007313991.1| - 0.079 12.8 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mur_ligase_M PF08245.7 gi|435852405|ref|YP_007313991.1| - 0.09 12.8 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Mur ligase middle domain AAA_30 PF13604.1 gi|435852405|ref|YP_007313991.1| - 0.11 12.1 0.0 0.27 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|435852405|ref|YP_007313991.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain TetR_N PF00440.18 gi|435852406|ref|YP_007313992.1| - 5.7e-15 54.6 0.2 9.5e-15 53.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Symplekin_C PF12295.3 gi|435852406|ref|YP_007313992.1| - 0.096 12.5 0.2 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Symplekin tight junction protein C terminal TetR_C_4 PF08359.6 gi|435852406|ref|YP_007313992.1| - 0.22 11.4 1.5 1.2 9.0 0.5 2.1 1 1 1 2 2 2 0 YsiA-like protein, C-terminal region Cep57_MT_bd PF06657.8 gi|435852407|ref|YP_007313993.1| - 0.023 14.6 0.2 0.043 13.7 0.1 1.4 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 Cpn60_TCP1 PF00118.19 gi|435852408|ref|YP_007313994.1| - 5.6e-163 543.0 13.8 6.9e-163 542.7 9.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family BioY PF02632.9 gi|435852409|ref|YP_007313995.1| - 5.3e-46 155.9 20.3 9.5e-46 155.1 14.1 1.3 1 0 0 1 1 1 1 BioY family DUF3816 PF12822.2 gi|435852409|ref|YP_007313995.1| - 0.0066 16.3 24.5 0.012 15.5 17.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) ECF-ribofla_trS PF07155.7 gi|435852409|ref|YP_007313995.1| - 0.0091 15.7 21.8 0.082 12.6 15.1 2.7 1 1 0 1 1 1 1 ECF-type riboflavin transporter, S component Pox_A9 PF04835.7 gi|435852409|ref|YP_007313995.1| - 0.16 11.8 0.2 0.16 11.8 0.1 2.6 3 0 0 3 3 3 0 A9 protein conserved region CbtB PF09489.5 gi|435852409|ref|YP_007313995.1| - 7.7 6.5 5.9 1.3 8.9 0.2 2.8 3 0 0 3 3 3 0 Probable cobalt transporter subunit (CbtB) ABC_tran PF00005.22 gi|435852410|ref|YP_007313996.1| - 6.1e-27 94.5 0.0 8.3e-27 94.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435852410|ref|YP_007313996.1| - 2.3e-11 44.2 0.1 3.5e-05 23.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|435852410|ref|YP_007313996.1| - 4.5e-11 42.3 0.2 1.2e-08 34.5 0.1 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|435852410|ref|YP_007313996.1| - 2.6e-08 33.6 0.2 0.00042 19.8 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|435852410|ref|YP_007313996.1| - 1.5e-06 28.3 0.0 6.7e-06 26.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|435852410|ref|YP_007313996.1| - 2.8e-05 23.8 0.0 0.002 17.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|435852410|ref|YP_007313996.1| - 0.00014 21.2 0.1 0.00027 20.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|435852410|ref|YP_007313996.1| - 0.00031 19.9 0.1 0.018 14.1 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|435852410|ref|YP_007313996.1| - 0.0014 18.6 0.1 0.0021 18.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|435852410|ref|YP_007313996.1| - 0.0015 18.4 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|435852410|ref|YP_007313996.1| - 0.0027 16.9 0.0 0.0039 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|435852410|ref|YP_007313996.1| - 0.0042 17.8 0.0 0.0069 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|435852410|ref|YP_007313996.1| - 0.0047 15.4 0.0 0.0059 15.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|435852410|ref|YP_007313996.1| - 0.0047 17.2 0.0 0.0072 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|435852410|ref|YP_007313996.1| - 0.0059 16.5 0.5 0.11 12.4 0.3 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|435852410|ref|YP_007313996.1| - 0.017 14.5 0.0 0.062 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|435852410|ref|YP_007313996.1| - 0.017 14.5 0.0 0.025 14.0 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|435852410|ref|YP_007313996.1| - 0.019 14.0 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|435852410|ref|YP_007313996.1| - 0.024 14.8 0.1 0.35 11.0 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|435852410|ref|YP_007313996.1| - 0.025 14.4 0.0 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|435852410|ref|YP_007313996.1| - 0.027 14.1 0.1 0.097 12.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|435852410|ref|YP_007313996.1| - 0.028 14.7 0.0 0.049 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|435852410|ref|YP_007313996.1| - 0.035 13.8 0.1 0.069 12.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|435852410|ref|YP_007313996.1| - 0.055 13.4 0.1 0.086 12.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|435852410|ref|YP_007313996.1| - 0.057 13.1 0.0 0.11 12.2 0.0 1.5 2 0 0 2 2 2 0 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|435852410|ref|YP_007313996.1| - 0.072 13.1 0.0 0.35 10.9 0.0 1.9 1 1 0 2 2 2 0 Sigma-54 interaction domain UPF0079 PF02367.12 gi|435852410|ref|YP_007313996.1| - 0.075 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_15 PF13175.1 gi|435852410|ref|YP_007313996.1| - 0.11 11.5 0.0 8.7 5.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|435852410|ref|YP_007313996.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|435852410|ref|YP_007313996.1| - 0.13 12.4 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.12 gi|435852410|ref|YP_007313996.1| - 0.14 11.7 0.1 0.23 10.9 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Methyltransf_32 PF13679.1 gi|435852410|ref|YP_007313996.1| - 0.18 11.5 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ABC_tran PF00005.22 gi|435852411|ref|YP_007313997.1| - 5.4e-26 91.5 0.0 8e-26 90.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435852411|ref|YP_007313997.1| - 4.3e-12 46.5 0.3 1.8e-09 38.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|435852411|ref|YP_007313997.1| - 7.9e-06 25.1 0.0 0.024 13.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|435852411|ref|YP_007313997.1| - 0.00029 20.9 0.0 0.0022 18.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|435852411|ref|YP_007313997.1| - 0.00039 20.2 0.0 0.001 18.9 0.0 1.7 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|435852411|ref|YP_007313997.1| - 0.0004 19.8 0.0 0.00074 19.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|435852411|ref|YP_007313997.1| - 0.00057 19.1 0.0 0.098 11.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|435852411|ref|YP_007313997.1| - 0.0028 17.0 0.0 1.3 8.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|435852411|ref|YP_007313997.1| - 0.003 16.7 0.0 0.0051 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|435852411|ref|YP_007313997.1| - 0.0039 16.6 0.0 0.8 9.0 0.1 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|435852411|ref|YP_007313997.1| - 0.0054 16.7 0.0 0.0095 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|435852411|ref|YP_007313997.1| - 0.013 14.6 0.0 0.023 13.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|435852411|ref|YP_007313997.1| - 0.018 14.7 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_18 PF13238.1 gi|435852411|ref|YP_007313997.1| - 0.032 14.5 0.0 1.8 8.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|435852411|ref|YP_007313997.1| - 0.057 13.2 0.0 0.31 10.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|435852411|ref|YP_007313997.1| - 0.064 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|435852411|ref|YP_007313997.1| - 0.067 12.8 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|435852411|ref|YP_007313997.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_24 PF13479.1 gi|435852411|ref|YP_007313997.1| - 0.1 12.1 0.2 3.1 7.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|435852411|ref|YP_007313997.1| - 0.11 10.9 0.0 0.7 8.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|435852411|ref|YP_007313997.1| - 0.11 12.7 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain CbiQ PF02361.11 gi|435852412|ref|YP_007313998.1| - 1.8e-44 152.0 12.8 2.6e-44 151.4 8.9 1.2 1 0 0 1 1 1 1 Cobalt transport protein TOBE PF03459.12 gi|435852413|ref|YP_007313999.1| - 2.8e-15 56.1 1.2 1.1e-14 54.2 0.3 2.0 2 0 0 2 2 2 1 TOBE domain HTH_1 PF00126.22 gi|435852413|ref|YP_007313999.1| - 3.2e-06 26.7 0.1 8.8e-06 25.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Antitoxin-MazE PF04014.13 gi|435852413|ref|YP_007313999.1| - 0.62 9.8 3.1 0.93 9.2 0.1 2.6 3 0 0 3 3 3 0 Antidote-toxin recognition MazE HTH_3 PF01381.17 gi|435852414|ref|YP_007314000.1| - 2.1e-13 49.8 0.1 2.4e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|435852414|ref|YP_007314000.1| - 3.7e-10 39.6 0.1 4e-10 39.5 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|435852414|ref|YP_007314000.1| - 3.8e-06 27.0 0.0 4.4e-06 26.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|435852414|ref|YP_007314000.1| - 7.4e-06 26.0 0.0 8.4e-06 25.9 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain IF3_C PF00707.17 gi|435852414|ref|YP_007314000.1| - 0.071 12.8 0.1 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain HTH_25 PF13413.1 gi|435852414|ref|YP_007314000.1| - 0.096 12.3 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain ABC_tran PF00005.22 gi|435852415|ref|YP_007314001.1| - 4.7e-32 111.1 0.0 9.3e-32 110.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|435852415|ref|YP_007314001.1| - 5.5e-11 42.9 1.0 1e-06 28.9 0.0 2.5 2 1 1 3 3 3 2 AAA domain TOBE_2 PF08402.5 gi|435852415|ref|YP_007314001.1| - 1.5e-05 24.8 0.0 3.7e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|435852415|ref|YP_007314001.1| - 0.00017 20.9 0.1 0.012 14.9 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|435852415|ref|YP_007314001.1| - 0.00018 21.9 0.6 0.00037 20.8 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|435852415|ref|YP_007314001.1| - 0.00022 21.3 0.7 0.0018 18.4 0.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|435852415|ref|YP_007314001.1| - 0.0016 18.4 0.0 0.003 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|435852415|ref|YP_007314001.1| - 0.0018 17.4 0.1 0.43 9.5 0.0 2.5 3 0 0 3 3 3 1 AAA ATPase domain AAA_19 PF13245.1 gi|435852415|ref|YP_007314001.1| - 0.0071 16.0 0.0 0.034 13.8 0.1 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_10 PF12846.2 gi|435852415|ref|YP_007314001.1| - 0.0096 15.3 0.2 0.032 13.6 0.1 1.9 2 0 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|435852415|ref|YP_007314001.1| - 0.011 15.1 0.2 0.024 14.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|435852415|ref|YP_007314001.1| - 0.04 14.4 0.0 0.079 13.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein DUF258 PF03193.11 gi|435852415|ref|YP_007314001.1| - 0.042 13.0 0.1 0.074 12.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|435852415|ref|YP_007314001.1| - 0.064 13.5 0.1 0.2 11.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain PEPCK_ATP PF01293.15 gi|435852415|ref|YP_007314001.1| - 0.083 11.3 0.1 0.16 10.5 0.1 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_25 PF13481.1 gi|435852415|ref|YP_007314001.1| - 0.086 12.2 0.0 0.83 9.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|435852415|ref|YP_007314001.1| - 0.094 11.8 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Arch_ATPase PF01637.13 gi|435852415|ref|YP_007314001.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase SbcCD_C PF13558.1 gi|435852415|ref|YP_007314001.1| - 0.11 12.4 2.3 0.31 10.9 0.4 2.3 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|435852415|ref|YP_007314001.1| - 0.12 13.1 2.0 0.83 10.4 1.3 2.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|435852415|ref|YP_007314001.1| - 0.13 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|435852415|ref|YP_007314001.1| - 0.15 11.8 0.0 0.36 10.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|435852415|ref|YP_007314001.1| - 0.16 11.5 0.1 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|435852416|ref|YP_007314002.1| - 1.4e-20 73.6 17.8 1.4e-20 73.6 12.4 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component YesK PF14150.1 gi|435852416|ref|YP_007314002.1| - 0.16 12.0 0.3 0.16 12.0 0.2 2.8 2 1 0 2 2 2 0 YesK-like protein DUF1049 PF06305.6 gi|435852416|ref|YP_007314002.1| - 9.4 5.8 10.7 0.15 11.5 0.8 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1049) SBP_bac_11 PF13531.1 gi|435852417|ref|YP_007314003.1| - 1.1e-50 172.4 0.0 1.3e-50 172.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|435852417|ref|YP_007314003.1| - 1.1e-09 38.5 0.1 0.00024 20.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|435852417|ref|YP_007314003.1| - 0.00011 21.6 0.0 0.00017 21.0 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|435852417|ref|YP_007314003.1| - 0.006 15.5 0.0 0.0091 14.9 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain ODV-E18 PF10717.4 gi|435852417|ref|YP_007314003.1| - 0.0076 15.6 0.1 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 Occlusion-derived virus envelope protein ODV-E18 DUF1510 PF07423.6 gi|435852417|ref|YP_007314003.1| - 0.017 14.4 0.3 0.026 13.8 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) MacB_PCD PF12704.2 gi|435852417|ref|YP_007314003.1| - 0.035 13.6 0.4 0.068 12.7 0.1 1.7 2 0 0 2 2 2 0 MacB-like periplasmic core domain N_methyl_3 PF13633.1 gi|435852417|ref|YP_007314003.1| - 0.96 9.4 6.3 2.4 8.2 4.3 1.7 1 0 0 1 1 1 0 Prokaryotic N-terminal methylation site LVIVD PF08309.6 gi|435852418|ref|YP_007314004.1| - 7.7e-70 229.6 46.6 4.1e-15 54.4 2.7 7.8 7 0 0 7 7 7 7 LVIVD repeat VCBS PF13517.1 gi|435852418|ref|YP_007314004.1| - 4.7e-05 23.6 42.1 0.00099 19.4 6.2 6.9 3 1 4 7 7 7 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Beta_propel PF09826.4 gi|435852418|ref|YP_007314004.1| - 0.0016 16.9 0.2 0.013 13.8 0.1 2.2 1 1 0 1 1 1 1 Beta propeller domain Phage_Coat_Gp8 PF05371.7 gi|435852418|ref|YP_007314004.1| - 2.7 7.6 5.2 28 4.3 0.0 4.1 5 0 0 5 5 5 0 Phage major coat protein, Gp8 MTHFR_C PF12225.3 gi|435852419|ref|YP_007314005.1| - 3.9e-30 103.2 1.4 3.9e-30 103.2 1.0 1.8 2 0 0 2 2 2 1 Methylene-tetrahydrofolate reductase C terminal Fer4 PF00037.22 gi|435852419|ref|YP_007314005.1| - 1.9 8.2 6.4 3.6 7.3 0.3 3.2 2 0 0 2 2 2 0 4Fe-4S binding domain Pterin_bind PF00809.17 gi|435852420|ref|YP_007314006.1| - 6.3e-39 133.5 0.2 1.3e-38 132.5 0.2 1.5 1 0 0 1 1 1 1 Pterin binding enzyme THF_DHG_CYH_C PF02882.14 gi|435852421|ref|YP_007314007.1| - 1.9e-63 212.3 6.3 1.9e-63 212.3 3.8 1.4 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|435852421|ref|YP_007314007.1| - 3.8e-42 143.0 0.2 6e-42 142.3 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AdoHcyase_NAD PF00670.16 gi|435852421|ref|YP_007314007.1| - 0.018 14.8 2.8 0.97 9.2 2.0 2.2 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PTS_IIB PF02302.12 gi|435852421|ref|YP_007314007.1| - 0.76 10.3 6.9 0.25 11.8 0.2 3.0 3 1 1 4 4 4 0 PTS system, Lactose/Cellobiose specific IIB subunit SHMT PF00464.14 gi|435852422|ref|YP_007314008.1| - 1.1e-171 570.6 0.5 1.3e-171 570.3 0.4 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|435852422|ref|YP_007314008.1| - 1.6e-10 40.5 0.0 2.1e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|435852422|ref|YP_007314008.1| - 2.2e-07 30.3 0.4 3.2e-07 29.8 0.3 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|435852422|ref|YP_007314008.1| - 0.015 14.3 0.1 0.024 13.7 0.1 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.15 gi|435852422|ref|YP_007314008.1| - 0.042 12.4 0.0 0.096 11.2 0.0 1.5 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Formyl_trans_N PF00551.14 gi|435852423|ref|YP_007314009.1| - 2e-51 174.1 0.0 2.2e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase HTH_3 PF01381.17 gi|435852424|ref|YP_007314010.1| - 3.4e-11 42.8 0.2 3.5e-10 39.5 0.0 2.5 2 1 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|435852424|ref|YP_007314010.1| - 6.4e-09 35.7 0.0 2.8e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|435852424|ref|YP_007314010.1| - 3.7e-07 30.2 0.1 1.6e-06 28.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|435852424|ref|YP_007314010.1| - 5.7e-05 22.6 0.0 0.00047 19.7 0.1 2.4 2 0 0 2 2 2 1 HTH domain NUMOD1 PF07453.8 gi|435852424|ref|YP_007314010.1| - 0.00061 19.5 0.0 0.1 12.4 0.0 2.6 2 0 0 2 2 2 1 NUMOD1 domain HTH_25 PF13413.1 gi|435852424|ref|YP_007314010.1| - 0.006 16.1 0.0 0.021 14.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|435852424|ref|YP_007314010.1| - 0.038 13.6 0.0 0.086 12.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MerR_1 PF13411.1 gi|435852424|ref|YP_007314010.1| - 0.059 13.1 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein Sigma70_r4 PF04545.11 gi|435852424|ref|YP_007314010.1| - 0.071 12.4 0.1 0.25 10.6 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|435852424|ref|YP_007314010.1| - 0.11 12.0 0.1 0.21 11.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1743 PF08489.6 gi|435852425|ref|YP_007314011.1| - 7.4e-39 132.1 0.0 1.4e-38 131.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) Zn-ribbon_8 PF09723.5 gi|435852425|ref|YP_007314011.1| - 0.032 14.2 1.9 0.76 9.7 0.1 3.0 2 0 0 2 2 2 0 Zinc ribbon domain C1_1 PF00130.17 gi|435852425|ref|YP_007314011.1| - 0.045 13.4 0.8 0.045 13.4 0.6 1.8 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|435852425|ref|YP_007314011.1| - 0.048 13.4 0.9 0.14 11.9 0.6 1.9 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|435852425|ref|YP_007314011.1| - 0.083 12.3 4.8 0.34 10.4 3.3 2.1 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|435852425|ref|YP_007314011.1| - 0.096 12.3 4.1 0.28 10.8 2.8 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|435852425|ref|YP_007314011.1| - 0.33 10.6 2.9 1.2 8.8 0.2 2.5 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.6 gi|435852425|ref|YP_007314011.1| - 5 6.7 8.7 11 5.5 6.0 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain NAD_synthase PF02540.12 gi|435852426|ref|YP_007314012.1| - 9.7e-87 289.8 0.0 1.1e-86 289.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|435852426|ref|YP_007314012.1| - 1.1e-06 27.4 0.0 3.3e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|435852426|ref|YP_007314012.1| - 0.00022 20.7 0.0 0.00043 19.8 0.0 1.5 2 0 0 2 2 2 1 Asparagine synthase DUF1713 PF08213.6 gi|435852426|ref|YP_007314012.1| - 0.055 13.1 0.6 0.09 12.3 0.4 1.3 1 0 0 1 1 1 0 Mitochondrial domain of unknown function (DUF1713) ThiI PF02568.9 gi|435852426|ref|YP_007314012.1| - 0.096 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|435852426|ref|YP_007314012.1| - 0.096 11.9 0.0 1.4 8.1 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC PIN_4 PF13638.1 gi|435852427|ref|YP_007314013.1| - 0.0023 18.0 0.0 0.0033 17.5 0.0 1.3 1 0 0 1 1 1 1 PIN domain Rad50_zn_hook PF04423.9 gi|435852427|ref|YP_007314013.1| - 0.021 14.2 2.1 0.075 12.5 0.1 2.4 1 1 1 2 2 2 0 Rad50 zinc hook motif UPF0278 PF08745.6 gi|435852427|ref|YP_007314013.1| - 0.057 12.6 0.3 0.1 11.8 0.2 1.3 1 0 0 1 1 1 0 UPF0278 family Prok-RING_1 PF14446.1 gi|435852427|ref|YP_007314013.1| - 0.092 12.4 0.8 0.15 11.7 0.6 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF2256 PF10013.4 gi|435852427|ref|YP_007314013.1| - 0.12 12.1 2.4 5.8 6.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) MOZART2 PF12926.2 gi|435852427|ref|YP_007314013.1| - 0.16 11.6 0.6 0.38 10.3 0.2 1.7 1 1 0 2 2 2 0 Mitotic-spindle organizing gamma-tubulin ring associated zf-NADH-PPase PF09297.6 gi|435852427|ref|YP_007314013.1| - 0.35 10.4 3.0 0.69 9.4 0.3 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Pribosyltran PF00156.22 gi|435852428|ref|YP_007314014.1| - 2e-22 79.2 0.2 3e-22 78.6 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.1 gi|435852428|ref|YP_007314014.1| - 7e-05 22.3 0.0 0.00015 21.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|435852428|ref|YP_007314014.1| - 9e-05 21.8 0.0 0.00016 21.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.10 gi|435852428|ref|YP_007314014.1| - 0.00013 21.7 0.2 0.00041 20.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|435852428|ref|YP_007314014.1| - 0.00034 19.9 0.1 0.00076 18.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|435852428|ref|YP_007314014.1| - 0.00043 19.5 0.0 0.0008 18.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|435852428|ref|YP_007314014.1| - 0.001 18.6 0.1 0.0026 17.3 0.1 1.6 1 0 0 1 1 1 1 HTH domain PRTase_2 PF15609.1 gi|435852428|ref|YP_007314014.1| - 0.0023 17.2 0.0 0.0054 16.0 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_38 PF13936.1 gi|435852428|ref|YP_007314014.1| - 0.0084 15.6 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|435852428|ref|YP_007314014.1| - 0.0085 16.2 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|435852428|ref|YP_007314014.1| - 0.0086 15.6 0.0 0.026 14.0 0.0 1.8 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|435852428|ref|YP_007314014.1| - 0.013 15.4 0.0 0.064 13.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|435852428|ref|YP_007314014.1| - 0.014 14.7 0.0 0.029 13.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2481 PF10654.4 gi|435852428|ref|YP_007314014.1| - 0.025 14.2 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) UPRTase PF14681.1 gi|435852428|ref|YP_007314014.1| - 0.03 13.5 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase MarR_2 PF12802.2 gi|435852428|ref|YP_007314014.1| - 0.035 13.7 0.1 0.17 11.5 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_10 PF04967.7 gi|435852428|ref|YP_007314014.1| - 0.053 13.1 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.1 gi|435852428|ref|YP_007314014.1| - 0.13 12.4 0.0 0.41 10.8 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix DHH PF01368.15 gi|435852429|ref|YP_007314015.1| - 3e-12 46.4 0.2 6e-12 45.4 0.2 1.5 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|435852429|ref|YP_007314015.1| - 1.6e-11 43.8 0.1 4.9e-11 42.3 0.0 1.9 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.14 gi|435852429|ref|YP_007314015.1| - 2.8e-05 24.0 28.8 0.00074 19.5 4.0 3.0 1 1 0 2 2 2 2 DnaJ central domain tRNA_anti_2 PF13742.1 gi|435852429|ref|YP_007314015.1| - 3.7e-05 23.4 0.0 0.00016 21.4 0.0 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|435852429|ref|YP_007314015.1| - 0.0002 21.3 0.7 0.0011 19.0 0.1 2.3 2 0 0 2 2 2 1 S1 RNA binding domain Rep_fac-A_3 PF08661.6 gi|435852429|ref|YP_007314015.1| - 0.037 13.9 0.0 0.08 12.8 0.0 1.6 1 0 0 1 1 1 0 Replication factor A protein 3 HypA PF01155.14 gi|435852429|ref|YP_007314015.1| - 0.27 10.9 23.4 7.2 6.3 2.0 4.4 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family Band_7 PF01145.20 gi|435852430|ref|YP_007314016.1| - 5.8e-36 124.0 3.5 7.8e-36 123.6 2.4 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Glyco_hydro_80 PF13647.1 gi|435852430|ref|YP_007314016.1| - 0.00054 19.3 0.0 0.00086 18.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 80 of chitosanase A Band_7_1 PF13421.1 gi|435852430|ref|YP_007314016.1| - 0.0078 15.7 0.1 0.014 14.9 0.1 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family ArsC PF03960.10 gi|435852430|ref|YP_007314016.1| - 0.11 12.5 0.8 1 9.4 0.1 2.2 1 1 1 2 2 2 0 ArsC family NfeD PF01957.13 gi|435852431|ref|YP_007314017.1| - 1.3e-28 99.9 0.6 1.3e-28 99.9 0.4 2.4 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|435852431|ref|YP_007314017.1| - 6.3e-05 22.7 0.8 9.9e-05 22.0 0.5 1.2 1 0 0 1 1 1 1 Clp protease Asp_Glu_race PF01177.17 gi|435852431|ref|YP_007314017.1| - 0.013 15.4 0.1 0.02 14.8 0.1 1.3 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase Antitoxin-MazE PF04014.13 gi|435852431|ref|YP_007314017.1| - 0.12 12.1 0.6 0.31 10.8 0.4 1.7 1 0 0 1 1 1 0 Antidote-toxin recognition MazE AIRS_C PF02769.17 gi|435852432|ref|YP_007314018.1| - 1.1e-16 61.1 1.7 1.9e-16 60.4 1.2 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|435852432|ref|YP_007314018.1| - 1.8e-12 47.3 0.1 6.1e-12 45.6 0.1 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain GATase PF00117.23 gi|435852433|ref|YP_007314019.1| - 2.5e-35 121.6 0.0 2.8e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|435852433|ref|YP_007314019.1| - 2.2e-08 33.8 0.8 1.1e-07 31.5 0.1 2.0 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|435852433|ref|YP_007314019.1| - 1.3e-06 28.0 0.0 2.5e-06 27.0 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|435852433|ref|YP_007314019.1| - 3e-06 27.0 0.0 1.1e-05 25.1 0.0 1.8 1 1 0 1 1 1 1 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.19 gi|435852433|ref|YP_007314019.1| - 0.056 12.9 0.1 0.09 12.2 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family GATase_5 PF13507.1 gi|435852433|ref|YP_007314019.1| - 0.071 12.0 0.0 0.83 8.4 0.0 2.2 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain CarboxypepD_reg PF13620.1 gi|435852434|ref|YP_007314020.1| - 0.0003 20.7 6.1 0.0023 17.9 1.2 3.0 1 1 1 2 2 2 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|435852434|ref|YP_007314020.1| - 0.00064 19.5 2.7 0.0017 18.2 0.5 2.1 1 1 1 2 2 2 1 Bacterial Ig-like domain (group 1) AMIN PF11741.3 gi|435852434|ref|YP_007314020.1| - 0.13 12.2 0.1 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 AMIN domain CarboxypepD_reg PF13620.1 gi|435852435|ref|YP_007314021.1| - 2.2e-05 24.4 0.5 8e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|435852435|ref|YP_007314021.1| - 0.00052 19.9 0.0 0.00089 19.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) TBPIP PF07106.8 gi|435852436|ref|YP_007314022.1| - 0.0014 18.2 13.1 0.011 15.3 6.7 2.3 1 1 0 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CHAD PF05235.9 gi|435852436|ref|YP_007314022.1| - 0.0016 18.0 1.0 0.0016 18.0 0.7 1.5 1 1 0 1 1 1 1 CHAD domain FH2 PF02181.18 gi|435852436|ref|YP_007314022.1| - 0.0018 17.2 4.8 0.099 11.5 2.6 2.0 2 0 0 2 2 2 1 Formin Homology 2 Domain PilJ PF13675.1 gi|435852436|ref|YP_007314022.1| - 0.0024 18.1 6.4 0.33 11.2 1.1 2.2 1 1 1 2 2 2 2 Type IV pili methyl-accepting chemotaxis transducer N-term FUSC PF04632.7 gi|435852436|ref|YP_007314022.1| - 0.0031 16.0 0.0 0.0042 15.5 0.0 1.1 1 0 0 1 1 1 1 Fusaric acid resistance protein family DUF1664 PF07889.7 gi|435852436|ref|YP_007314022.1| - 0.0031 17.3 4.3 0.0071 16.1 0.1 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) Tropomyosin_1 PF12718.2 gi|435852436|ref|YP_007314022.1| - 0.012 15.4 10.4 0.04 13.7 5.3 2.1 2 0 0 2 2 2 0 Tropomyosin like Use1 PF09753.4 gi|435852436|ref|YP_007314022.1| - 0.016 14.6 8.9 0.026 13.9 6.2 1.3 1 1 0 1 1 1 0 Membrane fusion protein Use1 DUF3829 PF12889.2 gi|435852436|ref|YP_007314022.1| - 0.021 14.0 0.4 0.29 10.2 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3829) FlxA PF14282.1 gi|435852436|ref|YP_007314022.1| - 0.04 13.8 10.8 0.19 11.6 7.3 2.1 2 1 0 2 2 2 0 FlxA-like protein Matrilin_ccoil PF10393.4 gi|435852436|ref|YP_007314022.1| - 0.046 13.0 9.9 0.17 11.2 0.6 3.2 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF16 PF01519.11 gi|435852436|ref|YP_007314022.1| - 0.048 13.8 6.0 0.043 14.0 2.0 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF16 Syntaxin-6_N PF09177.6 gi|435852436|ref|YP_007314022.1| - 0.051 13.9 7.6 8.6 6.8 3.3 2.7 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Surfac_D-trimer PF09006.6 gi|435852436|ref|YP_007314022.1| - 0.075 12.7 0.8 0.075 12.7 0.6 3.4 4 0 0 4 4 4 0 Lung surfactant protein D coiled-coil trimerisation HR1 PF02185.11 gi|435852436|ref|YP_007314022.1| - 0.089 12.5 9.7 2 8.2 0.3 3.4 3 0 0 3 3 3 0 Hr1 repeat Macoilin PF09726.4 gi|435852436|ref|YP_007314022.1| - 0.13 10.5 12.5 0.18 10.0 6.6 2.2 1 1 1 2 2 2 0 Transmembrane protein Exonuc_VII_L PF02601.10 gi|435852436|ref|YP_007314022.1| - 0.13 11.4 5.1 0.18 10.9 3.5 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Phage_GP20 PF06810.6 gi|435852436|ref|YP_007314022.1| - 0.14 11.6 6.5 0.056 12.8 2.7 1.7 2 0 0 2 2 2 0 Phage minor structural protein GP20 DUF3584 PF12128.3 gi|435852436|ref|YP_007314022.1| - 0.18 9.1 9.9 0.49 7.6 6.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Chlor_dismutase PF06778.7 gi|435852436|ref|YP_007314022.1| - 0.18 11.4 1.4 0.31 10.7 0.9 1.4 1 1 0 1 1 1 0 Chlorite dismutase P4Ha_N PF08336.6 gi|435852436|ref|YP_007314022.1| - 0.18 11.5 9.1 1.1 9.0 0.0 2.8 1 1 1 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region V_ATPase_I PF01496.14 gi|435852436|ref|YP_007314022.1| - 0.22 9.3 7.3 0.83 7.4 4.8 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF2730 PF10805.3 gi|435852436|ref|YP_007314022.1| - 0.22 11.2 12.1 0.88 9.3 0.4 4.2 3 1 2 5 5 4 0 Protein of unknown function (DUF2730) Allexi_40kDa PF05549.6 gi|435852436|ref|YP_007314022.1| - 0.22 10.7 7.6 0.78 8.9 3.4 2.0 1 1 1 2 2 2 0 Allexivirus 40kDa protein Prefoldin_2 PF01920.15 gi|435852436|ref|YP_007314022.1| - 0.23 11.2 14.7 8 6.2 2.7 3.4 3 1 1 4 4 3 0 Prefoldin subunit NPV_P10 PF05531.7 gi|435852436|ref|YP_007314022.1| - 0.26 11.5 5.3 4.1 7.7 2.9 2.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein CK2S PF15011.1 gi|435852436|ref|YP_007314022.1| - 0.3 10.8 4.2 1.1 9.0 0.1 2.2 1 1 1 2 2 2 0 Casein Kinase 2 substrate YlqD PF11068.3 gi|435852436|ref|YP_007314022.1| - 0.41 10.6 8.3 6.1 6.9 4.0 2.1 2 0 0 2 2 2 0 YlqD protein Baculo_PEP_C PF04513.7 gi|435852436|ref|YP_007314022.1| - 0.41 10.4 5.1 2 8.2 2.7 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Seryl_tRNA_N PF02403.17 gi|435852436|ref|YP_007314022.1| - 0.45 10.5 8.6 4.4 7.3 1.3 2.7 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF972 PF06156.8 gi|435852436|ref|YP_007314022.1| - 0.51 10.6 7.9 3 8.2 3.7 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF972) Pox_A_type_inc PF04508.7 gi|435852436|ref|YP_007314022.1| - 0.61 10.0 11.9 5.8 6.9 0.0 3.7 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat TPR_MLP1_2 PF07926.7 gi|435852436|ref|YP_007314022.1| - 0.64 9.7 11.9 0.46 10.2 6.5 1.9 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein YbaB_DNA_bd PF02575.11 gi|435852436|ref|YP_007314022.1| - 0.69 9.8 4.4 7.2 6.5 0.1 2.4 2 0 0 2 2 2 0 YbaB/EbfC DNA-binding family DUF1515 PF07439.6 gi|435852436|ref|YP_007314022.1| - 0.76 9.6 6.8 2.6 7.8 0.1 2.7 2 1 1 3 3 2 0 Protein of unknown function (DUF1515) CENP-H PF05837.7 gi|435852436|ref|YP_007314022.1| - 1 9.5 7.3 1.7 8.8 3.6 2.0 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Prefoldin_3 PF13758.1 gi|435852436|ref|YP_007314022.1| - 1.1 9.0 7.5 2 8.2 0.1 2.9 2 1 0 2 2 2 0 Prefoldin subunit Laminin_II PF06009.7 gi|435852436|ref|YP_007314022.1| - 1.3 8.7 5.0 2.2 8.0 2.2 2.0 2 0 0 2 2 2 0 Laminin Domain II SlyX PF04102.7 gi|435852436|ref|YP_007314022.1| - 1.4 9.3 14.2 6.7 7.1 1.1 3.8 1 1 3 4 4 4 0 SlyX DUF342 PF03961.8 gi|435852436|ref|YP_007314022.1| - 2 6.7 8.7 2.3 6.5 4.8 1.7 1 1 0 2 2 2 0 Protein of unknown function (DUF342) EAP30 PF04157.11 gi|435852436|ref|YP_007314022.1| - 2.1 7.4 9.5 1.2 8.2 1.8 2.5 2 1 1 3 3 3 0 EAP30/Vps36 family FlaC_arch PF05377.6 gi|435852436|ref|YP_007314022.1| - 2.3 8.2 5.6 8.7 6.3 0.3 3.1 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) Vps51 PF08700.6 gi|435852436|ref|YP_007314022.1| - 2.8 7.8 10.0 1.4 8.8 0.6 3.6 3 1 1 4 4 4 0 Vps51/Vps67 DivIC PF04977.10 gi|435852436|ref|YP_007314022.1| - 2.9 7.4 12.5 0.093 12.2 2.1 2.7 2 1 1 3 3 2 0 Septum formation initiator CorA PF01544.13 gi|435852436|ref|YP_007314022.1| - 3.4 6.6 12.7 0.53 9.2 4.7 2.3 2 1 0 2 2 1 0 CorA-like Mg2+ transporter protein DASH_Dad2 PF08654.5 gi|435852436|ref|YP_007314022.1| - 3.8 7.5 11.9 0.66 9.9 0.6 2.8 3 1 1 4 4 2 0 DASH complex subunit Dad2 Fib_alpha PF08702.5 gi|435852436|ref|YP_007314022.1| - 5.1 7.2 9.2 42 4.2 5.0 2.6 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family Uds1 PF15456.1 gi|435852436|ref|YP_007314022.1| - 5.3 7.0 11.3 2.5 8.1 2.8 2.6 1 1 2 3 3 3 0 Up-regulated During Septation DUF2802 PF10975.3 gi|435852436|ref|YP_007314022.1| - 5.5 6.8 10.3 17 5.2 2.4 3.2 2 1 0 3 3 3 0 Protein of unknown function (DUF2802) DUF3373 PF11853.3 gi|435852436|ref|YP_007314022.1| - 6.3 5.2 7.6 14 4.0 5.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3373) Mnd1 PF03962.10 gi|435852436|ref|YP_007314022.1| - 7.7 6.1 11.8 5 6.7 6.4 1.9 1 1 0 2 2 2 0 Mnd1 family UDPG_MGDP_dh_N PF03721.9 gi|435852437|ref|YP_007314023.1| - 5e-65 218.3 0.6 1.4e-64 216.8 0.3 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|435852437|ref|YP_007314023.1| - 2.1e-34 117.5 0.0 4.1e-34 116.6 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|435852437|ref|YP_007314023.1| - 2.8e-30 104.5 0.1 1.4e-29 102.3 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|435852437|ref|YP_007314023.1| - 5.6e-07 29.4 0.2 4e-06 26.6 0.1 2.5 3 1 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|435852437|ref|YP_007314023.1| - 1e-06 29.0 0.1 0.0085 16.4 0.0 3.6 4 1 0 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|435852437|ref|YP_007314023.1| - 9.3e-06 25.5 0.2 0.0044 16.8 0.1 2.6 2 1 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|435852437|ref|YP_007314023.1| - 1.5e-05 24.7 0.1 4.4e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|435852437|ref|YP_007314023.1| - 0.00013 21.2 0.2 0.017 14.2 0.0 3.0 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|435852437|ref|YP_007314023.1| - 0.0023 17.3 0.1 0.0056 16.1 0.0 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|435852437|ref|YP_007314023.1| - 0.0032 17.8 0.7 0.011 16.0 0.5 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|435852437|ref|YP_007314023.1| - 0.015 15.2 1.3 0.078 12.9 0.5 2.3 2 1 0 2 2 2 0 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|435852437|ref|YP_007314023.1| - 0.018 14.6 0.0 0.041 13.4 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GFO_IDH_MocA PF01408.17 gi|435852437|ref|YP_007314023.1| - 0.02 15.3 0.2 0.078 13.4 0.1 2.2 2 1 0 2 2 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_11 PF14833.1 gi|435852437|ref|YP_007314023.1| - 0.039 14.0 0.1 0.21 11.6 0.3 2.0 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TrkA_N PF02254.13 gi|435852437|ref|YP_007314023.1| - 0.075 13.0 1.0 0.21 11.5 0.1 2.3 3 1 0 3 3 2 0 TrkA-N domain DAO PF01266.19 gi|435852437|ref|YP_007314023.1| - 0.11 11.4 0.2 0.25 10.1 0.1 1.6 1 0 0 1 1 1 0 FAD dependent oxidoreductase MMR_HSR1 PF01926.18 gi|435852438|ref|YP_007314024.1| - 2.1e-19 69.5 0.3 5.3e-19 68.3 0.2 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|435852438|ref|YP_007314024.1| - 1.8e-17 62.8 0.0 3.6e-17 61.9 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|435852438|ref|YP_007314024.1| - 2.5e-13 49.5 2.2 2.4e-12 46.4 0.1 2.4 2 1 0 2 2 2 1 Ferrous iron transport protein B Arf PF00025.16 gi|435852438|ref|YP_007314024.1| - 0.00022 20.5 1.7 0.0069 15.6 0.4 2.9 1 1 1 2 2 2 1 ADP-ribosylation factor family Dynamin_N PF00350.18 gi|435852438|ref|YP_007314024.1| - 0.0045 16.8 0.1 0.92 9.3 0.0 2.5 2 0 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.12 gi|435852438|ref|YP_007314024.1| - 0.006 16.1 0.1 1.6 8.2 0.0 2.4 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein DUF258 PF03193.11 gi|435852438|ref|YP_007314024.1| - 0.01 15.0 0.1 0.016 14.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|435852438|ref|YP_007314024.1| - 0.015 15.1 0.0 0.04 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|435852438|ref|YP_007314024.1| - 0.016 13.9 0.4 0.04 12.6 0.0 1.8 2 0 0 2 2 2 0 ArgK protein SRPRB PF09439.5 gi|435852438|ref|YP_007314024.1| - 0.016 14.3 0.0 0.035 13.3 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|435852438|ref|YP_007314024.1| - 0.018 15.3 1.8 0.35 11.1 1.2 2.3 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|435852438|ref|YP_007314024.1| - 0.029 13.8 1.4 0.72 9.2 0.0 2.6 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|435852438|ref|YP_007314024.1| - 0.043 14.2 0.0 0.13 12.8 0.0 1.9 1 0 0 1 1 1 0 Miro-like protein AAA_16 PF13191.1 gi|435852438|ref|YP_007314024.1| - 0.044 13.7 0.0 0.095 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AIG1 PF04548.11 gi|435852438|ref|YP_007314024.1| - 0.056 12.5 0.2 0.11 11.6 0.0 1.5 2 0 0 2 2 2 0 AIG1 family AAA_28 PF13521.1 gi|435852438|ref|YP_007314024.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2688 PF10892.3 gi|435852440|ref|YP_007314026.1| - 0.054 13.1 0.1 0.071 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) zinc-ribbons_6 PF07191.7 gi|435852440|ref|YP_007314026.1| - 0.059 13.1 1.3 0.058 13.1 0.9 1.1 1 0 0 1 1 1 0 zinc-ribbons zf-MYND PF01753.13 gi|435852440|ref|YP_007314026.1| - 0.094 12.6 4.1 0.19 11.6 2.8 1.5 1 1 0 1 1 1 0 MYND finger zf-ribbon_3 PF13248.1 gi|435852440|ref|YP_007314026.1| - 0.13 11.4 2.9 0.27 10.5 2.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|435852440|ref|YP_007314026.1| - 0.22 11.1 4.9 0.25 10.9 3.4 1.2 1 1 0 1 1 1 0 Ribosomal protein S27 zf-HIT PF04438.11 gi|435852440|ref|YP_007314026.1| - 0.57 9.8 4.1 1.3 8.7 2.8 1.7 1 1 0 1 1 1 0 HIT zinc finger Zn_ribbon_recom PF13408.1 gi|435852440|ref|YP_007314026.1| - 0.85 9.9 5.3 1 9.6 3.7 1.3 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-AN1 PF01428.11 gi|435852440|ref|YP_007314026.1| - 8 6.4 6.7 2.1 8.2 0.3 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger DUF3006 PF11213.3 gi|435852441|ref|YP_007314027.1| - 2.3e-21 75.2 0.5 2.6e-21 75.1 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) DUF1887 PF09002.6 gi|435852441|ref|YP_007314027.1| - 0.095 11.0 0.7 0.097 11.0 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) Lactamase_B PF00753.22 gi|435852442|ref|YP_007314028.1| - 4.5e-14 52.5 0.5 6.7e-14 51.9 0.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|435852442|ref|YP_007314028.1| - 1.4e-05 24.7 0.0 2.9e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain LTD PF00932.14 gi|435852442|ref|YP_007314028.1| - 1.6e-05 24.9 1.6 0.00063 19.7 0.4 3.2 1 1 1 2 2 2 1 Lamin Tail Domain Lactamase_B_3 PF13483.1 gi|435852442|ref|YP_007314028.1| - 0.00014 21.6 0.1 0.00037 20.2 0.1 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ABC2_membrane_3 PF12698.2 gi|435852442|ref|YP_007314028.1| - 0.037 13.0 1.1 0.054 12.5 0.8 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein SAM_adeno_trans PF01887.11 gi|435852443|ref|YP_007314029.1| - 1.1e-88 296.7 0.4 1.2e-88 296.5 0.3 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Radical_SAM PF04055.16 gi|435852444|ref|YP_007314030.1| - 1.5e-17 64.2 0.5 4.5e-17 62.7 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|435852444|ref|YP_007314030.1| - 3.7e-05 23.9 0.6 0.00011 22.4 0.2 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|435852444|ref|YP_007314030.1| - 7.4e-05 22.8 0.0 0.00051 20.1 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S single cluster domain Orthopox_F14 PF06076.7 gi|435852444|ref|YP_007314030.1| - 0.0017 18.3 0.3 0.005 16.8 0.2 1.8 1 0 0 1 1 1 1 Orthopoxvirus F14 protein rpo132 PF12415.3 gi|435852444|ref|YP_007314030.1| - 0.095 11.6 0.0 0.28 10.1 0.0 1.7 1 0 0 1 1 1 0 Poxvirus DNA dependent RNA polymerase Ribosomal_60s PF00428.14 gi|435852445|ref|YP_007314031.1| - 1.2e-17 64.0 21.3 1.4e-17 63.8 14.8 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein Sigma70_ner PF04546.8 gi|435852445|ref|YP_007314031.1| - 0.096 12.2 3.1 0.12 12.0 2.2 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF1631 PF07793.6 gi|435852445|ref|YP_007314031.1| - 0.14 10.2 5.2 0.15 10.1 3.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) DUF3549 PF12069.3 gi|435852445|ref|YP_007314031.1| - 0.24 10.1 3.0 0.27 9.9 2.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3549) PepSY_2 PF13670.1 gi|435852445|ref|YP_007314031.1| - 0.58 10.0 14.7 0.73 9.7 8.4 2.0 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF3138 PF11336.3 gi|435852445|ref|YP_007314031.1| - 5.8 4.9 8.2 6.6 4.7 5.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) Ribosomal_L10 PF00466.15 gi|435852446|ref|YP_007314032.1| - 4.3e-24 84.3 0.3 4.3e-24 84.3 0.2 2.1 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|435852446|ref|YP_007314032.1| - 4.8e-07 30.0 26.9 4.4e-05 23.7 16.9 3.1 2 1 0 2 2 2 1 60s Acidic ribosomal protein Ribosomal_L1 PF00687.16 gi|435852447|ref|YP_007314033.1| - 3.8e-47 160.4 0.6 4.5e-47 160.2 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.9 gi|435852448|ref|YP_007314034.1| - 7.8e-27 92.5 1.1 1.2e-26 91.9 0.7 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|435852448|ref|YP_007314034.1| - 5e-21 74.6 1.0 5e-21 74.6 0.7 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.8 gi|435852449|ref|YP_007314035.1| - 1e-23 82.8 0.3 1.5e-23 82.3 0.2 1.2 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|435852449|ref|YP_007314035.1| - 4e-06 26.3 2.5 5.2e-05 22.8 0.1 2.9 3 0 0 3 3 3 1 KOW motif NusG PF02357.14 gi|435852449|ref|YP_007314035.1| - 0.02 15.1 0.0 0.11 12.7 0.0 2.1 1 1 0 1 1 1 0 Transcription termination factor nusG Motile_Sperm PF00635.21 gi|435852449|ref|YP_007314035.1| - 0.05 13.2 0.0 0.086 12.4 0.0 1.4 1 0 0 1 1 1 0 MSP (Major sperm protein) domain SecE PF00584.15 gi|435852450|ref|YP_007314036.1| - 0.011 15.3 0.3 0.012 15.1 0.2 1.2 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex FtsZ_C PF12327.3 gi|435852451|ref|YP_007314037.1| - 1.8e-36 124.0 2.0 5.2e-36 122.6 1.4 1.8 1 0 0 1 1 1 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|435852451|ref|YP_007314037.1| - 2.5e-36 125.5 0.2 7.1e-36 124.0 0.1 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|435852451|ref|YP_007314037.1| - 0.069 12.9 0.2 0.22 11.3 0.1 1.9 2 0 0 2 2 2 0 ThiF family tRNA_deacylase PF04414.7 gi|435852452|ref|YP_007314038.1| - 2e-63 213.3 0.0 2.8e-63 212.8 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase TPP_enzyme_N PF02776.13 gi|435852453|ref|YP_007314039.1| - 2.3e-56 189.9 0.0 7.2e-56 188.3 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|435852453|ref|YP_007314039.1| - 1.1e-41 141.9 0.0 2.6e-41 140.7 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|435852453|ref|YP_007314039.1| - 2.4e-34 118.0 0.0 1.1e-33 115.8 0.0 2.2 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|435852453|ref|YP_007314039.1| - 0.055 13.0 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Aldedh PF00171.17 gi|435852454|ref|YP_007314040.1| - 1.8e-136 455.1 0.0 2e-136 455.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family GYD PF08734.6 gi|435852454|ref|YP_007314040.1| - 0.086 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 GYD domain Aldedh PF00171.17 gi|435852455|ref|YP_007314041.1| - 2e-146 487.9 0.1 2.3e-146 487.7 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1296 PF06972.6 gi|435852455|ref|YP_007314041.1| - 0.049 13.5 0.1 0.2 11.6 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1296) DUF61 PF01886.11 gi|435852456|ref|YP_007314042.1| - 1e-26 93.2 0.1 1.3e-26 93.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 IF-2B PF01008.12 gi|435852458|ref|YP_007314044.1| - 1.6e-85 286.5 4.0 1.8e-85 286.3 2.8 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Ribosomal_S2 PF00318.15 gi|435852458|ref|YP_007314044.1| - 0.0068 15.6 0.7 0.035 13.3 0.1 2.1 1 1 1 2 2 2 1 Ribosomal protein S2 Chlorosome_CsmC PF11098.3 gi|435852458|ref|YP_007314044.1| - 0.026 14.2 0.7 0.066 12.9 0.2 1.8 1 1 0 1 1 1 0 Chlorosome envelope protein C FumaraseC_C PF10415.4 gi|435852458|ref|YP_007314044.1| - 0.09 12.8 0.4 6.1 6.9 0.0 2.8 2 0 0 2 2 2 0 Fumarase C C-terminus Cdd1 PF11731.3 gi|435852459|ref|YP_007314045.1| - 2.2e-29 101.2 0.4 2.3e-29 101.1 0.3 1.0 1 0 0 1 1 1 1 Pathogenicity locus TfoX_C PF04994.8 gi|435852459|ref|YP_007314045.1| - 6.6e-08 32.3 0.0 7.9e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 TfoX C-terminal domain HHH PF00633.18 gi|435852459|ref|YP_007314045.1| - 4.6e-05 22.8 0.1 8.2e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|435852459|ref|YP_007314045.1| - 0.00013 22.0 0.0 0.00018 21.6 0.0 1.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|435852459|ref|YP_007314045.1| - 0.0011 18.5 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_8 PF14716.1 gi|435852459|ref|YP_007314045.1| - 0.024 14.8 0.0 0.037 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix domain HEM4 PF02602.10 gi|435852459|ref|YP_007314045.1| - 0.041 13.1 0.0 0.17 11.0 0.0 1.7 1 1 1 2 2 2 0 Uroporphyrinogen-III synthase HemD IMS_HHH PF11798.3 gi|435852459|ref|YP_007314045.1| - 0.055 13.5 0.2 0.33 11.0 0.2 2.0 1 1 1 2 2 2 0 IMS family HHH motif DUF4332 PF14229.1 gi|435852459|ref|YP_007314045.1| - 0.073 13.0 0.0 0.097 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) Nitroreductase PF00881.19 gi|435852460|ref|YP_007314046.1| - 6.4e-27 94.3 0.0 7.7e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Methyltransf_11 PF08241.7 gi|435852461|ref|YP_007314047.1| - 1.8e-14 54.0 0.0 3.2e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|435852461|ref|YP_007314047.1| - 6.1e-07 29.3 0.0 8.1e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|435852461|ref|YP_007314047.1| - 7.9e-07 28.7 0.0 1e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|435852461|ref|YP_007314047.1| - 1.7e-05 25.1 0.0 3.1e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|435852461|ref|YP_007314047.1| - 2.4e-05 24.7 0.0 6e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|435852461|ref|YP_007314047.1| - 9.9e-05 22.0 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.2 gi|435852461|ref|YP_007314047.1| - 0.0002 21.9 0.0 0.00044 20.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|435852461|ref|YP_007314047.1| - 0.0032 16.6 0.0 0.0073 15.4 0.0 1.8 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family OrfB_IS605 PF01385.14 gi|435852462|ref|YP_007314048.1| - 5.6e-45 153.4 6.7 5.6e-45 153.4 4.6 1.5 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|435852462|ref|YP_007314048.1| - 9.6e-22 76.0 1.8 2.1e-21 74.9 1.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|435852462|ref|YP_007314048.1| - 6.8e-20 70.5 0.3 1.4e-19 69.4 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L32p PF01783.18 gi|435852462|ref|YP_007314048.1| - 0.33 11.1 0.0 0.33 11.1 0.0 2.7 3 0 0 3 3 3 0 Ribosomal L32p protein family Rubredoxin PF00301.15 gi|435852462|ref|YP_007314048.1| - 7 6.6 9.9 2e+02 1.9 6.8 2.6 1 1 0 1 1 1 0 Rubredoxin zf-RanBP PF00641.13 gi|435852462|ref|YP_007314048.1| - 7.9 5.6 11.1 2.9 7.0 0.5 3.3 3 0 0 3 3 3 0 Zn-finger in Ran binding protein and others Peptidase_S49 PF01343.13 gi|435852463|ref|YP_007314049.1| - 1.8e-46 157.7 0.1 2.8e-46 157.0 0.1 1.3 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|435852463|ref|YP_007314049.1| - 7.3e-07 29.0 1.0 0.00014 21.5 0.1 2.2 2 0 0 2 2 2 2 Clp protease Peptidase_S8 PF00082.17 gi|435852463|ref|YP_007314049.1| - 0.003 16.7 1.5 0.005 16.0 1.1 1.4 1 1 0 1 1 1 1 Subtilase family PLDc_N PF13396.1 gi|435852464|ref|YP_007314050.1| - 9.1e-13 47.6 5.1 9.1e-13 47.6 3.5 1.5 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal DUF2878 PF11086.3 gi|435852464|ref|YP_007314050.1| - 0.003 17.5 3.4 0.0038 17.2 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2878) DUF4386 PF14329.1 gi|435852464|ref|YP_007314050.1| - 0.022 14.2 1.8 0.025 14.0 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4386) DUF4184 PF13803.1 gi|435852464|ref|YP_007314050.1| - 0.023 14.0 1.8 0.023 14.0 1.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4184) DUF2568 PF10823.3 gi|435852464|ref|YP_007314050.1| - 0.034 14.3 1.3 0.041 14.1 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2568) Arif-1 PF06770.6 gi|435852464|ref|YP_007314050.1| - 0.088 12.1 3.1 0.092 12.1 2.1 1.0 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) Frag1 PF10277.4 gi|435852464|ref|YP_007314050.1| - 0.12 11.7 1.9 0.14 11.6 1.3 1.0 1 0 0 1 1 1 0 Frag1/DRAM/Sfk1 family DUF2074 PF09847.4 gi|435852464|ref|YP_007314050.1| - 0.13 10.9 5.0 0.14 10.8 3.5 1.0 1 0 0 1 1 1 0 Predicted permease (DUF2074) DUF3816 PF12822.2 gi|435852464|ref|YP_007314050.1| - 0.14 12.0 6.7 0.18 11.6 4.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) YbjM PF11045.3 gi|435852464|ref|YP_007314050.1| - 0.29 10.9 2.1 0.31 10.7 1.5 1.1 1 0 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae SecG PF03840.9 gi|435852464|ref|YP_007314050.1| - 1.1 9.0 5.5 0.19 11.4 0.9 1.8 1 1 1 2 2 2 0 Preprotein translocase SecG subunit DUF4118 PF13493.1 gi|435852464|ref|YP_007314050.1| - 2.5 8.3 7.5 2.9 8.1 5.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) P12 PF12669.2 gi|435852464|ref|YP_007314050.1| - 4.4 7.5 5.7 27 5.0 1.7 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family tRNA-synt_1g PF09334.6 gi|435852465|ref|YP_007314051.1| - 4.8e-143 476.5 0.0 6e-143 476.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|435852465|ref|YP_007314051.1| - 2e-29 101.2 0.3 5.4e-29 99.8 0.2 1.8 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|435852465|ref|YP_007314051.1| - 4.7e-21 74.4 0.1 4.1e-09 35.0 0.0 4.0 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|435852465|ref|YP_007314051.1| - 1.6e-14 53.9 0.5 2.9e-14 53.1 0.4 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|435852465|ref|YP_007314051.1| - 6e-14 51.8 0.2 1.2e-08 34.4 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|435852465|ref|YP_007314051.1| - 0.00023 19.9 0.0 0.02 13.6 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) UPF0547 PF10571.4 gi|435852465|ref|YP_007314051.1| - 0.015 15.0 2.1 0.047 13.4 1.5 1.9 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 tRNA-synt_1d PF00750.14 gi|435852465|ref|YP_007314051.1| - 0.039 12.7 0.0 0.95 8.2 0.0 2.6 2 1 1 3 3 3 0 tRNA synthetases class I (R) DUF2228 PF10228.4 gi|435852465|ref|YP_007314051.1| - 0.14 11.6 0.4 3.6 7.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2228) zf-ribbon_3 PF13248.1 gi|435852465|ref|YP_007314051.1| - 2 7.7 10.5 0.11 11.7 2.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain CYTH PF01928.16 gi|435852466|ref|YP_007314052.1| - 5.3e-35 120.7 0.6 6e-35 120.6 0.4 1.0 1 0 0 1 1 1 1 CYTH domain DUF35 PF01796.12 gi|435852467|ref|YP_007314053.1| - 7e-20 71.0 0.1 9.6e-20 70.5 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|435852467|ref|YP_007314053.1| - 2.1e-10 40.1 0.5 3e-10 39.7 0.4 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.7 gi|435852467|ref|YP_007314053.1| - 0.15 11.7 0.2 0.17 11.5 0.1 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-C3HC4_3 PF13920.1 gi|435852467|ref|YP_007314053.1| - 0.15 11.7 2.0 0.22 11.1 1.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Thiolase_C PF02803.13 gi|435852468|ref|YP_007314054.1| - 4.4e-13 48.7 2.9 1.6e-11 43.6 0.0 2.6 1 1 1 2 2 2 2 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|435852468|ref|YP_007314054.1| - 4.7e-13 48.7 4.4 5.2e-12 45.3 1.2 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|435852468|ref|YP_007314054.1| - 5.7e-05 22.7 4.1 5.7e-05 22.7 2.9 1.9 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|435852468|ref|YP_007314054.1| - 0.0036 17.1 0.9 0.15 11.9 0.0 3.3 3 1 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain DUF3892 PF13031.1 gi|435852468|ref|YP_007314054.1| - 0.1 13.0 0.3 3 8.3 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3892) ACP_syn_III PF08545.5 gi|435852468|ref|YP_007314054.1| - 2.5 7.8 5.5 13 5.5 0.7 2.9 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.5 gi|435852469|ref|YP_007314055.1| - 1e-09 38.2 0.0 2.6e-09 36.9 0.0 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|435852469|ref|YP_007314055.1| - 2.6e-05 23.8 0.0 0.00097 18.7 0.0 2.5 2 1 1 3 3 3 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|435852469|ref|YP_007314055.1| - 4.8e-05 22.9 0.2 7.8e-05 22.2 0.2 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.18 gi|435852469|ref|YP_007314055.1| - 0.0016 17.4 0.5 0.0027 16.7 0.3 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|435852469|ref|YP_007314055.1| - 0.0056 16.3 1.9 0.0056 16.3 1.3 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_3 PF01381.17 gi|435852470|ref|YP_007314056.1| - 7.4e-08 32.1 0.0 2.5e-07 30.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|435852470|ref|YP_007314056.1| - 2.4e-06 27.5 0.0 8.6e-06 25.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|435852470|ref|YP_007314056.1| - 0.0046 17.1 0.0 0.01 16.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|435852470|ref|YP_007314056.1| - 0.11 12.3 0.0 0.31 10.8 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Cas_Cas4 PF01930.12 gi|435852471|ref|YP_007314057.1| - 2.1e-05 24.5 1.8 0.005 16.7 0.1 2.4 2 1 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|435852471|ref|YP_007314057.1| - 0.055 12.8 1.5 0.35 10.2 1.1 2.0 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily IncA PF04156.9 gi|435852472|ref|YP_007314058.1| - 0.0061 16.1 24.5 0.026 14.1 4.0 3.4 2 1 1 3 3 3 2 IncA protein HsbA PF12296.3 gi|435852472|ref|YP_007314058.1| - 0.017 15.0 1.8 0.12 12.1 0.1 3.0 3 1 1 4 4 4 0 Hydrophobic surface binding protein A Sec8_exocyst PF04048.9 gi|435852472|ref|YP_007314058.1| - 0.018 14.6 0.4 0.018 14.6 0.3 3.4 3 3 0 3 3 3 0 Sec8 exocyst complex component specific domain Occludin_ELL PF07303.8 gi|435852472|ref|YP_007314058.1| - 0.089 13.5 16.5 0.24 12.1 0.9 3.9 3 2 1 4 4 4 0 Occludin homology domain Baculo_PEP_C PF04513.7 gi|435852472|ref|YP_007314058.1| - 0.53 10.1 9.8 8.5 6.2 0.0 4.1 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Uds1 PF15456.1 gi|435852472|ref|YP_007314058.1| - 0.63 10.0 13.3 3.3 7.7 0.1 3.3 2 1 1 3 3 3 0 Up-regulated During Septation DUF342 PF03961.8 gi|435852472|ref|YP_007314058.1| - 0.66 8.3 19.5 0.16 10.3 2.5 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF342) DUF4463 PF14703.1 gi|435852472|ref|YP_007314058.1| - 1 9.9 6.3 1.1 9.7 0.4 3.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4463) TBPIP PF07106.8 gi|435852472|ref|YP_007314058.1| - 1.2 8.6 27.8 1 8.8 3.9 4.3 3 1 1 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Reo_sigmaC PF04582.7 gi|435852472|ref|YP_007314058.1| - 2.6 7.1 7.5 0.86 8.7 0.4 2.7 1 1 1 3 3 3 0 Reovirus sigma C capsid protein DivIC PF04977.10 gi|435852472|ref|YP_007314058.1| - 5.1 6.6 15.4 1.2 8.7 0.4 4.6 2 2 2 4 4 4 0 Septum formation initiator TBCA PF02970.11 gi|435852472|ref|YP_007314058.1| - 9.7 6.3 12.0 0.22 11.6 0.5 3.7 3 2 2 5 5 5 0 Tubulin binding cofactor A ABC_tran PF00005.22 gi|435852473|ref|YP_007314059.1| - 2.2e-41 141.3 0.0 2.3e-22 79.7 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|435852473|ref|YP_007314059.1| - 5.7e-16 59.3 1.5 0.0011 18.9 0.0 4.3 2 2 1 3 3 3 3 AAA domain SMC_N PF02463.14 gi|435852473|ref|YP_007314059.1| - 2.1e-15 56.5 5.7 2.3e-05 23.7 0.1 4.2 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|435852473|ref|YP_007314059.1| - 6.2e-13 48.0 3.2 1.2e-12 47.1 2.2 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|435852473|ref|YP_007314059.1| - 9e-08 31.4 3.4 9e-08 31.4 2.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_25 PF13481.1 gi|435852473|ref|YP_007314059.1| - 3.6e-07 29.7 0.7 0.04 13.3 0.0 3.7 4 0 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|435852473|ref|YP_007314059.1| - 3.4e-06 26.4 0.9 0.032 13.7 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Rad17 PF03215.10 gi|435852473|ref|YP_007314059.1| - 7.6e-06 24.8 0.0 0.06 12.0 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|435852473|ref|YP_007314059.1| - 2e-05 23.8 3.0 0.09 11.9 0.0 3.3 3 0 0 3 3 3 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|435852473|ref|YP_007314059.1| - 3.3e-05 24.6 2.0 0.052 14.3 0.0 3.2 2 2 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|435852473|ref|YP_007314059.1| - 3.7e-05 23.8 0.0 0.11 12.7 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_23 PF13476.1 gi|435852473|ref|YP_007314059.1| - 4.5e-05 23.8 0.2 0.34 11.1 0.2 2.4 2 0 0 2 2 2 2 AAA domain Fer4_6 PF12837.2 gi|435852473|ref|YP_007314059.1| - 0.00015 21.4 11.8 0.00037 20.2 1.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_15 PF13175.1 gi|435852473|ref|YP_007314059.1| - 0.00017 20.7 0.0 0.06 12.3 0.0 3.1 3 0 0 3 3 3 1 AAA ATPase domain Fer4_7 PF12838.2 gi|435852473|ref|YP_007314059.1| - 0.00025 21.3 7.5 0.00075 19.8 5.2 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435852473|ref|YP_007314059.1| - 0.00028 21.0 8.6 0.0006 20.0 6.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435852473|ref|YP_007314059.1| - 0.00049 19.8 6.5 0.00095 18.9 4.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_22 PF13401.1 gi|435852473|ref|YP_007314059.1| - 0.00057 20.0 0.2 0.39 10.8 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|435852473|ref|YP_007314059.1| - 0.0009 19.2 0.1 1.4 8.8 0.1 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|435852473|ref|YP_007314059.1| - 0.0013 18.2 1.0 0.79 9.1 0.0 3.3 3 0 0 3 3 3 1 AAA-like domain SbcCD_C PF13558.1 gi|435852473|ref|YP_007314059.1| - 0.0015 18.3 0.0 1.8 8.5 0.0 3.1 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|435852473|ref|YP_007314059.1| - 0.0017 18.0 0.2 0.39 10.3 0.0 2.5 2 0 0 2 2 2 1 NACHT domain Fer4_2 PF12797.2 gi|435852473|ref|YP_007314059.1| - 0.0018 18.0 2.3 0.0018 18.0 1.6 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_14 PF13173.1 gi|435852473|ref|YP_007314059.1| - 0.0028 17.5 0.6 1.1 9.1 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA PF00004.24 gi|435852473|ref|YP_007314059.1| - 0.0043 17.2 0.1 1.1 9.5 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) VirE PF05272.6 gi|435852473|ref|YP_007314059.1| - 0.0044 16.5 0.0 0.47 9.8 0.0 2.3 2 0 0 2 2 2 1 Virulence-associated protein E Fer4_10 PF13237.1 gi|435852473|ref|YP_007314059.1| - 0.0049 16.6 11.1 0.011 15.5 1.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_18 PF13238.1 gi|435852473|ref|YP_007314059.1| - 0.0054 17.0 0.5 5.8 7.2 0.0 3.4 4 0 0 4 4 3 0 AAA domain DUF87 PF01935.12 gi|435852473|ref|YP_007314059.1| - 0.0084 15.9 0.8 5.3 6.7 0.0 2.8 3 0 0 3 3 2 0 Domain of unknown function DUF87 ArgK PF03308.11 gi|435852473|ref|YP_007314059.1| - 0.015 14.1 1.2 1.6 7.4 0.0 2.2 2 0 0 2 2 2 0 ArgK protein MobB PF03205.9 gi|435852473|ref|YP_007314059.1| - 0.016 14.9 0.7 0.88 9.2 0.0 2.9 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|435852473|ref|YP_007314059.1| - 0.018 14.8 0.0 2.4 8.0 0.0 2.8 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|435852473|ref|YP_007314059.1| - 0.034 14.6 0.0 1.2 9.6 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein NB-ARC PF00931.17 gi|435852473|ref|YP_007314059.1| - 0.042 12.7 0.6 0.42 9.4 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_5 PF07728.9 gi|435852473|ref|YP_007314059.1| - 0.043 13.5 0.3 20 4.8 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|435852473|ref|YP_007314059.1| - 0.049 13.5 0.3 1.6 8.6 0.0 2.7 2 2 0 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|435852473|ref|YP_007314059.1| - 0.049 13.3 0.9 7.9 6.1 0.0 2.8 3 0 0 3 3 2 0 NTPase AAA_24 PF13479.1 gi|435852473|ref|YP_007314059.1| - 0.082 12.4 0.5 14 5.1 0.0 3.0 3 0 0 3 3 3 0 AAA domain Fer4_11 PF13247.1 gi|435852473|ref|YP_007314059.1| - 0.12 12.2 3.6 0.23 11.3 2.5 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435852473|ref|YP_007314059.1| - 0.48 10.5 7.4 0.29 11.1 1.2 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|435852473|ref|YP_007314059.1| - 0.53 10.7 9.2 1.1 9.6 5.5 2.0 1 1 1 2 2 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|435852473|ref|YP_007314059.1| - 1.2 9.6 12.9 0.26 11.6 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|435852473|ref|YP_007314059.1| - 1.6 9.4 14.3 0.09 13.3 3.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435852473|ref|YP_007314059.1| - 3.2 8.5 8.3 0.13 13.0 0.5 2.3 2 0 0 2 2 1 0 4Fe-4S double cluster binding domain Rab5ip PF07019.7 gi|435852474|ref|YP_007314060.1| - 2.7 8.1 7.0 6.6 6.9 4.9 1.6 1 1 0 1 1 1 0 Rab5-interacting protein (Rab5ip) Lactamase_B_2 PF12706.2 gi|435852475|ref|YP_007314061.1| - 1.7e-09 37.4 0.0 7.6e-09 35.3 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|435852475|ref|YP_007314061.1| - 5.6e-06 26.1 0.1 2.4e-05 24.0 0.0 2.1 3 0 0 3 3 3 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|435852475|ref|YP_007314061.1| - 0.0067 16.1 0.0 0.031 14.0 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|435852475|ref|YP_007314061.1| - 0.19 10.6 0.7 16 4.3 0.0 2.1 1 1 1 2 2 2 0 cAMP phosphodiesterases class-II Thioredoxin PF00085.15 gi|435852476|ref|YP_007314062.1| - 2.4e-24 85.0 0.2 2.6e-24 84.9 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|435852476|ref|YP_007314062.1| - 8.4e-11 42.0 0.1 2.9e-10 40.3 0.1 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|435852476|ref|YP_007314062.1| - 1.2e-10 41.3 0.2 6e-08 32.6 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like KaiB PF07689.7 gi|435852476|ref|YP_007314062.1| - 1.7e-06 27.4 0.1 1.9e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 KaiB domain Thioredoxin_3 PF13192.1 gi|435852476|ref|YP_007314062.1| - 3.3e-06 26.8 0.0 3.9e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.1 gi|435852476|ref|YP_007314062.1| - 3.4e-06 26.9 0.1 5.4e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|435852476|ref|YP_007314062.1| - 4.3e-06 26.3 0.1 5.4e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.19 gi|435852476|ref|YP_007314062.1| - 5.9e-06 26.1 0.4 1.3e-05 25.0 0.2 1.7 1 1 0 1 1 1 1 Glutaredoxin HyaE PF07449.6 gi|435852476|ref|YP_007314062.1| - 1.4e-05 24.8 0.0 1.7e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Redoxin PF08534.5 gi|435852476|ref|YP_007314062.1| - 5.8e-05 22.6 0.4 0.014 14.9 0.0 2.0 1 1 1 2 2 2 2 Redoxin Thioredoxin_6 PF13848.1 gi|435852476|ref|YP_007314062.1| - 7.8e-05 22.5 0.1 8.4e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain DUF836 PF05768.9 gi|435852476|ref|YP_007314062.1| - 9.3e-05 22.6 0.1 0.00011 22.4 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DSBA PF01323.15 gi|435852476|ref|YP_007314062.1| - 0.0002 20.9 0.1 0.0078 15.7 0.0 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Calsequestrin PF01216.12 gi|435852476|ref|YP_007314062.1| - 0.00062 18.6 0.1 0.00072 18.4 0.1 1.0 1 0 0 1 1 1 1 Calsequestrin AhpC-TSA PF00578.16 gi|435852476|ref|YP_007314062.1| - 0.0013 18.3 0.2 0.0021 17.7 0.2 1.4 1 1 0 1 1 1 1 AhpC/TSA family TrbC_Ftype PF09673.5 gi|435852476|ref|YP_007314062.1| - 0.005 16.4 0.0 0.0055 16.2 0.0 1.2 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein VWA_3 PF13768.1 gi|435852476|ref|YP_007314062.1| - 0.005 16.5 0.0 0.0057 16.3 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF953 PF06110.6 gi|435852476|ref|YP_007314062.1| - 0.011 15.1 0.3 0.032 13.6 0.2 1.7 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) TraF PF13728.1 gi|435852476|ref|YP_007314062.1| - 0.045 13.2 0.1 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon protein ABC_transp_aux PF09822.4 gi|435852476|ref|YP_007314062.1| - 0.045 13.1 0.1 0.052 12.9 0.1 1.1 1 0 0 1 1 1 0 ABC-type uncharacterized transport system Thioredoxin_4 PF13462.1 gi|435852476|ref|YP_007314062.1| - 0.09 12.7 0.1 0.43 10.5 0.0 1.8 1 1 1 2 2 2 0 Thioredoxin PHB_acc_N PF07879.6 gi|435852476|ref|YP_007314062.1| - 0.12 12.1 0.6 0.17 11.6 0.4 1.3 1 0 0 1 1 1 0 PHB/PHA accumulation regulator DNA-binding domain QRPTase_C PF01729.14 gi|435852477|ref|YP_007314063.1| - 6.1e-30 103.9 0.1 9.7e-30 103.3 0.1 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|435852477|ref|YP_007314063.1| - 5.4e-17 61.3 0.0 9.5e-17 60.6 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain B12-binding PF02310.14 gi|435852477|ref|YP_007314063.1| - 0.062 13.1 0.3 0.52 10.1 0.0 2.3 2 1 0 2 2 2 0 B12 binding domain TaqI_C PF12950.2 gi|435852478|ref|YP_007314064.1| - 1.6e-21 76.2 2.6 1.4e-20 73.2 0.7 2.6 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain Eco57I PF07669.6 gi|435852478|ref|YP_007314064.1| - 1.2e-17 64.1 0.1 5.1e-17 62.1 0.0 2.1 2 0 0 2 2 2 1 Eco57I restriction-modification methylase Methyltransf_26 PF13659.1 gi|435852478|ref|YP_007314064.1| - 5.1e-15 55.5 0.0 1e-14 54.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|435852478|ref|YP_007314064.1| - 1.8e-14 53.5 0.6 4.9e-09 35.6 0.0 3.8 4 1 0 4 4 4 2 N-6 DNA Methylase HSDR_N PF04313.9 gi|435852478|ref|YP_007314064.1| - 6.6e-10 39.0 0.0 2.5e-07 30.6 0.0 3.0 2 1 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.1 gi|435852478|ref|YP_007314064.1| - 5.3e-05 22.9 0.0 0.00022 21.0 0.0 2.1 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0020 PF01170.13 gi|435852478|ref|YP_007314064.1| - 9.7e-05 22.0 0.0 0.021 14.4 0.0 2.6 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 AMP-binding PF00501.23 gi|435852479|ref|YP_007314065.1| - 5.8e-98 328.0 0.0 6.7e-98 327.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|435852479|ref|YP_007314065.1| - 2.7e-20 73.0 0.3 6.6e-20 71.8 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain NAC PF01849.13 gi|435852480|ref|YP_007314066.1| - 3.3e-17 61.7 1.7 3.3e-17 61.7 1.2 1.4 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|435852480|ref|YP_007314066.1| - 4.7e-07 29.4 3.6 2.9e-06 26.9 0.1 2.8 3 0 0 3 3 3 1 UBA/TS-N domain UBA_4 PF14555.1 gi|435852480|ref|YP_007314066.1| - 0.00022 20.7 0.1 0.00031 20.2 0.1 1.3 1 0 0 1 1 1 1 UBA-like domain HTH_10 PF04967.7 gi|435852480|ref|YP_007314066.1| - 0.022 14.3 0.0 0.4 10.2 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain Death PF00531.17 gi|435852480|ref|YP_007314066.1| - 0.076 12.8 0.0 7.5 6.3 0.0 2.1 2 0 0 2 2 2 0 Death domain DUF2786 PF10979.3 gi|435852480|ref|YP_007314066.1| - 1 9.0 4.7 0.47 10.2 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) Fe-S_biosyn PF01521.15 gi|435852481|ref|YP_007314067.1| - 8.6e-13 48.2 0.0 1e-12 47.9 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis KaiC PF06745.8 gi|435852483|ref|YP_007314069.1| - 3.5e-27 94.9 0.0 4.3e-27 94.7 0.0 1.1 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|435852483|ref|YP_007314069.1| - 0.0012 17.7 1.5 0.014 14.2 0.2 2.1 2 0 0 2 2 2 2 PAXNEB protein PRA-CH PF01502.13 gi|435852484|ref|YP_007314070.1| - 6.1e-38 128.3 1.0 8.5e-38 127.8 0.7 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase T2SE PF00437.15 gi|435852485|ref|YP_007314071.1| - 3.7e-13 49.0 0.3 3.3e-12 45.8 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|435852485|ref|YP_007314071.1| - 5.7e-08 32.2 3.5 1.2e-07 31.2 0.3 2.7 2 0 0 2 2 2 1 KH domain IstB_IS21 PF01695.12 gi|435852485|ref|YP_007314071.1| - 0.00046 19.6 0.0 0.001 18.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|435852485|ref|YP_007314071.1| - 0.00059 19.5 0.0 0.0021 17.7 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain KH_2 PF07650.12 gi|435852485|ref|YP_007314071.1| - 0.0011 18.5 0.9 0.0051 16.3 0.6 2.2 1 0 0 1 1 1 1 KH domain AAA_17 PF13207.1 gi|435852485|ref|YP_007314071.1| - 0.0019 19.0 0.0 0.0091 16.8 0.0 2.2 2 0 0 2 2 1 1 AAA domain KH_4 PF13083.1 gi|435852485|ref|YP_007314071.1| - 0.0028 17.2 0.1 0.01 15.4 0.1 1.9 1 0 0 1 1 1 1 KH domain AAA_25 PF13481.1 gi|435852485|ref|YP_007314071.1| - 0.0034 16.7 0.0 0.0086 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|435852485|ref|YP_007314071.1| - 0.0035 16.4 0.0 0.008 15.2 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|435852485|ref|YP_007314071.1| - 0.0041 16.9 0.0 0.0095 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain KH_3 PF13014.1 gi|435852485|ref|YP_007314071.1| - 0.0043 16.6 4.1 0.0053 16.3 0.6 2.7 2 0 0 2 2 2 1 KH domain KaiC PF06745.8 gi|435852485|ref|YP_007314071.1| - 0.006 15.7 0.0 0.024 13.7 0.0 2.0 2 0 0 2 2 2 1 KaiC AAA_16 PF13191.1 gi|435852485|ref|YP_007314071.1| - 0.0091 15.9 0.0 0.031 14.2 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|435852485|ref|YP_007314071.1| - 0.019 14.4 0.0 0.048 13.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|435852485|ref|YP_007314071.1| - 0.02 14.4 0.8 0.1 12.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|435852485|ref|YP_007314071.1| - 0.021 14.9 0.0 0.48 10.5 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|435852485|ref|YP_007314071.1| - 0.022 15.0 0.1 0.075 13.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.7 gi|435852485|ref|YP_007314071.1| - 0.029 13.4 0.0 0.074 12.0 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|435852485|ref|YP_007314071.1| - 0.033 14.3 0.4 0.16 12.1 0.0 2.3 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|435852485|ref|YP_007314071.1| - 0.038 13.5 0.0 0.061 12.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|435852485|ref|YP_007314071.1| - 0.047 13.0 0.0 0.19 11.1 0.0 2.0 1 1 0 1 1 1 0 Thymidylate kinase Ribosomal_L19 PF01245.15 gi|435852485|ref|YP_007314071.1| - 0.068 12.9 0.4 1.8 8.3 0.0 3.0 3 0 0 3 3 3 0 Ribosomal protein L19 UPF0079 PF02367.12 gi|435852485|ref|YP_007314071.1| - 0.11 12.0 0.1 0.7 9.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 PrsW-protease PF13367.1 gi|435852486|ref|YP_007314072.1| - 0.026 13.6 1.3 0.037 13.2 0.9 1.4 1 1 0 1 1 1 0 Protease prsW family RDD PF06271.7 gi|435852486|ref|YP_007314072.1| - 0.034 14.0 1.4 0.12 12.2 0.1 1.9 1 1 1 2 2 2 0 RDD family DUF4199 PF13858.1 gi|435852486|ref|YP_007314072.1| - 0.048 13.5 0.4 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) ATPase_gene1 PF09527.5 gi|435852486|ref|YP_007314072.1| - 0.061 13.1 7.7 1.4 8.7 0.0 3.1 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) PRA1 PF03208.14 gi|435852486|ref|YP_007314072.1| - 0.061 12.6 0.5 0.089 12.1 0.3 1.3 1 0 0 1 1 1 0 PRA1 family protein HupE_UreJ_2 PF13795.1 gi|435852486|ref|YP_007314072.1| - 0.084 12.3 1.8 0.23 10.9 1.3 1.7 1 1 1 2 2 2 0 HupE / UreJ protein MNHE PF01899.11 gi|435852486|ref|YP_007314072.1| - 0.12 12.0 0.2 0.22 11.1 0.1 1.5 1 1 1 2 2 2 0 Na+/H+ ion antiporter subunit SPW PF03779.9 gi|435852486|ref|YP_007314072.1| - 0.12 11.7 1.7 0.22 10.9 1.0 1.6 1 1 0 1 1 1 0 SPW repeat DUF456 PF04306.8 gi|435852486|ref|YP_007314072.1| - 0.24 11.4 5.9 0.44 10.5 4.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF456) DUF3169 PF11368.3 gi|435852486|ref|YP_007314072.1| - 1.4 8.1 7.2 32 3.6 5.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3169) Colicin_V PF02674.11 gi|435852486|ref|YP_007314072.1| - 2.4 8.0 7.2 0.71 9.7 1.3 2.1 1 1 1 2 2 2 0 Colicin V production protein MTHFR PF02219.12 gi|435852487|ref|YP_007314073.1| - 9e-40 136.5 0.0 1e-39 136.3 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase Hydrolase_like PF13242.1 gi|435852487|ref|YP_007314073.1| - 0.053 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like F420_ligase PF01996.11 gi|435852488|ref|YP_007314074.1| - 1.3e-68 230.4 0.2 1.5e-68 230.2 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Pyr_redox_2 PF07992.9 gi|435852489|ref|YP_007314075.1| - 7.8e-26 91.2 0.0 1.8e-25 90.0 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|435852489|ref|YP_007314075.1| - 6.3e-23 80.9 0.3 2.1e-22 79.2 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|435852489|ref|YP_007314075.1| - 1.1e-15 57.7 0.0 1.1e-14 54.5 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|435852489|ref|YP_007314075.1| - 1.9e-06 28.0 0.0 0.00026 21.1 0.0 2.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|435852489|ref|YP_007314075.1| - 5.3e-05 22.3 0.0 0.12 11.2 0.0 2.6 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.13 gi|435852489|ref|YP_007314075.1| - 0.009 15.6 0.1 0.24 11.0 0.0 2.5 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|435852489|ref|YP_007314075.1| - 0.04 14.1 0.0 0.18 12.0 0.0 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding HI0933_like PF03486.9 gi|435852489|ref|YP_007314075.1| - 0.076 11.4 0.2 0.28 9.6 0.0 1.8 2 0 0 2 2 2 0 HI0933-like protein HMGL-like PF00682.14 gi|435852490|ref|YP_007314076.1| - 4.3e-74 249.1 1.5 4.3e-74 249.1 1.1 1.8 2 1 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|435852490|ref|YP_007314076.1| - 3.8e-31 107.6 4.0 7.2e-31 106.7 2.8 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain TatD_DNase PF01026.16 gi|435852491|ref|YP_007314077.1| - 1.3e-62 211.3 0.0 1.5e-62 211.1 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_4 PF13147.1 gi|435852491|ref|YP_007314077.1| - 0.00048 20.2 0.1 0.00059 19.9 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_2 PF04909.9 gi|435852491|ref|YP_007314077.1| - 0.0018 17.8 0.0 0.0042 16.6 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase AP_endonuc_2 PF01261.19 gi|435852491|ref|YP_007314077.1| - 0.046 13.0 0.0 0.33 10.2 0.0 2.1 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Y1_Tnp PF01797.11 gi|435852491|ref|YP_007314077.1| - 0.14 12.0 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Transposase IS200 like Lactamase_B PF00753.22 gi|435852492|ref|YP_007314078.1| - 7.4e-29 100.7 0.5 8.6e-29 100.5 0.3 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|435852492|ref|YP_007314078.1| - 1.2e-05 24.9 0.2 2.1e-05 24.1 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|435852492|ref|YP_007314078.1| - 0.00098 18.8 0.2 0.0029 17.3 0.2 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Radical_SAM_N PF08497.5 gi|435852493|ref|YP_007314079.1| - 1.3e-130 434.7 0.0 1.7e-130 434.3 0.0 1.2 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.3 gi|435852493|ref|YP_007314079.1| - 1e-16 61.2 0.0 1.8e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.16 gi|435852493|ref|YP_007314079.1| - 3.6e-14 53.2 0.5 5e-13 49.5 0.4 2.3 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|435852493|ref|YP_007314079.1| - 5.9e-05 22.9 0.0 0.035 13.9 0.0 3.2 4 0 0 4 4 4 2 B12 binding domain Peptidase_M10 PF00413.19 gi|435852495|ref|YP_007314081.1| - 6.4e-14 51.9 0.1 7.4e-14 51.7 0.0 1.2 1 1 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.1 gi|435852495|ref|YP_007314081.1| - 0.00047 20.1 1.3 0.0006 19.8 0.9 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_2 PF13574.1 gi|435852495|ref|YP_007314081.1| - 0.00097 19.2 1.7 0.0012 18.9 1.2 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.4 gi|435852495|ref|YP_007314081.1| - 0.0023 16.8 0.1 0.0037 16.2 0.1 1.3 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_3 PF13582.1 gi|435852495|ref|YP_007314081.1| - 0.0025 18.3 0.9 0.0037 17.7 0.6 1.4 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|435852495|ref|YP_007314081.1| - 0.0058 16.1 0.9 0.0058 16.1 0.6 1.5 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Astacin PF01400.19 gi|435852495|ref|YP_007314081.1| - 0.034 13.5 0.1 2.4 7.4 0.0 2.2 2 0 0 2 2 2 0 Astacin (Peptidase family M12A) DUF4503 PF14951.1 gi|435852495|ref|YP_007314081.1| - 0.095 10.8 0.0 0.13 10.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) Peptidase_M43 PF05572.8 gi|435852495|ref|YP_007314081.1| - 0.15 11.6 2.1 0.14 11.7 0.2 1.8 1 1 0 2 2 2 0 Pregnancy-associated plasma protein-A CCG PF02754.11 gi|435852496|ref|YP_007314082.1| - 7.3e-30 102.8 4.3 8.6e-15 54.5 0.2 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|435852496|ref|YP_007314082.1| - 1.1e-11 44.6 6.2 1.1e-11 44.6 4.3 2.7 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|435852496|ref|YP_007314082.1| - 2.4e-10 40.5 5.1 2.4e-10 40.5 3.5 2.5 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435852496|ref|YP_007314082.1| - 3.1e-07 30.6 7.1 3.1e-07 30.6 4.9 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|435852496|ref|YP_007314082.1| - 3.2e-06 26.8 22.7 4.7e-05 23.1 8.6 3.0 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|435852496|ref|YP_007314082.1| - 8.7e-06 25.1 20.7 0.00059 19.3 1.1 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435852496|ref|YP_007314082.1| - 4.1e-05 23.2 11.4 0.0017 18.1 1.0 4.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435852496|ref|YP_007314082.1| - 5.2e-05 23.9 7.8 0.0066 17.1 0.1 3.0 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|435852496|ref|YP_007314082.1| - 0.00041 20.1 14.2 0.039 13.8 0.7 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435852496|ref|YP_007314082.1| - 0.00086 19.5 19.6 0.001 19.2 9.7 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435852496|ref|YP_007314082.1| - 0.0025 18.1 9.2 0.59 10.5 0.5 2.9 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|435852496|ref|YP_007314082.1| - 0.011 15.9 2.5 0.011 15.9 1.7 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|435852496|ref|YP_007314082.1| - 0.021 15.3 5.3 0.93 10.1 0.1 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|435852496|ref|YP_007314082.1| - 0.022 15.1 0.2 0.022 15.1 0.1 3.9 4 1 1 5 5 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435852496|ref|YP_007314082.1| - 0.067 13.7 4.8 0.067 13.7 3.3 4.5 4 0 0 4 4 4 0 4Fe-4S binding domain FAD-oxidase_C PF02913.14 gi|435852497|ref|YP_007314083.1| - 6.1e-55 186.2 0.0 8.2e-55 185.8 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|435852497|ref|YP_007314083.1| - 1.7e-45 153.8 0.1 3.3e-45 152.9 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain TGT PF01702.13 gi|435852498|ref|YP_007314084.1| - 1.8e-25 89.6 0.5 1.6e-24 86.5 0.1 2.2 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|435852498|ref|YP_007314084.1| - 1.8e-14 53.3 0.0 4.8e-14 51.9 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|435852498|ref|YP_007314084.1| - 2.4e-14 52.7 0.1 1.4e-13 50.3 0.1 2.2 2 0 0 2 2 2 1 PUA domain Acetyltransf_1 PF00583.19 gi|435852499|ref|YP_007314085.1| - 1.5e-15 56.9 0.2 2.9e-15 56.0 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|435852499|ref|YP_007314085.1| - 1.3e-10 41.4 0.0 1.7e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|435852499|ref|YP_007314085.1| - 8.6e-09 35.4 0.4 1.4e-08 34.7 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|435852499|ref|YP_007314085.1| - 1.8e-08 33.9 0.0 2.6e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|435852499|ref|YP_007314085.1| - 2.1e-05 24.4 0.1 3e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|435852499|ref|YP_007314085.1| - 0.00011 22.0 0.0 0.00018 21.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|435852499|ref|YP_007314085.1| - 0.00034 20.7 0.1 0.00082 19.5 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|435852499|ref|YP_007314085.1| - 0.012 15.5 0.3 0.062 13.2 0.2 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|435852499|ref|YP_007314085.1| - 0.046 13.3 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|435852499|ref|YP_007314085.1| - 0.1 12.4 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase UPF0058 PF01893.11 gi|435852500|ref|YP_007314086.1| - 3.4e-31 107.1 1.1 3.9e-31 106.9 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Toprim_4 PF13662.1 gi|435852501|ref|YP_007314087.1| - 2.8e-10 40.0 0.2 1.5e-09 37.7 0.1 2.2 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|435852501|ref|YP_007314087.1| - 0.00016 21.5 0.1 0.001 19.0 0.1 2.4 2 1 0 2 2 2 1 Toprim domain Toprim_2 PF13155.1 gi|435852501|ref|YP_007314087.1| - 0.044 14.0 0.0 0.096 13.0 0.0 1.6 1 0 0 1 1 1 0 Toprim-like Pyr_redox_2 PF07992.9 gi|435852502|ref|YP_007314088.1| - 9.4e-26 90.9 1.4 6.5e-25 88.1 1.0 3.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|435852502|ref|YP_007314088.1| - 5.4e-22 77.9 2.3 7.9e-16 58.2 0.1 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|435852502|ref|YP_007314088.1| - 8.8e-13 48.2 0.0 4.7e-12 45.9 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|435852502|ref|YP_007314088.1| - 4.7e-11 42.1 7.7 0.0039 16.1 0.6 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|435852502|ref|YP_007314088.1| - 3.1e-09 37.1 2.5 3e-05 24.1 0.0 3.1 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|435852502|ref|YP_007314088.1| - 7.1e-08 31.3 2.7 0.042 12.3 0.0 4.0 3 1 1 4 4 4 3 HI0933-like protein K_oxygenase PF13434.1 gi|435852502|ref|YP_007314088.1| - 2.7e-07 29.8 0.2 1.3e-06 27.5 0.0 1.9 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.19 gi|435852502|ref|YP_007314088.1| - 6.4e-07 28.5 2.9 0.33 9.7 0.0 3.3 3 0 0 3 3 3 3 FAD binding domain GIDA PF01134.17 gi|435852502|ref|YP_007314088.1| - 2.6e-05 23.2 1.1 8.3e-05 21.6 0.0 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|435852502|ref|YP_007314088.1| - 4e-05 22.8 6.3 0.016 14.3 0.4 3.1 3 1 1 4 4 4 2 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|435852502|ref|YP_007314088.1| - 6.7e-05 22.6 0.8 0.0013 18.4 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|435852502|ref|YP_007314088.1| - 0.00011 21.4 2.4 0.16 11.0 0.1 3.1 2 1 1 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|435852502|ref|YP_007314088.1| - 0.00017 21.8 0.0 0.012 15.8 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding ApbA PF02558.11 gi|435852502|ref|YP_007314088.1| - 0.0002 20.7 0.7 0.2 11.0 0.3 2.9 2 1 0 2 2 2 2 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.1 gi|435852502|ref|YP_007314088.1| - 0.0016 18.4 0.7 0.15 12.0 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain ThiF PF00899.16 gi|435852502|ref|YP_007314088.1| - 0.0024 17.6 0.3 0.051 13.3 0.0 2.4 2 0 0 2 2 2 1 ThiF family TrkA_N PF02254.13 gi|435852502|ref|YP_007314088.1| - 0.0036 17.2 0.1 0.91 9.5 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain Lycopene_cycl PF05834.7 gi|435852502|ref|YP_007314088.1| - 0.0037 16.2 1.1 1.2 7.9 0.0 3.3 4 0 0 4 4 4 1 Lycopene cyclase protein Saccharop_dh PF03435.13 gi|435852502|ref|YP_007314088.1| - 0.0047 15.9 1.3 0.34 9.8 0.1 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|435852502|ref|YP_007314088.1| - 0.0059 16.3 0.2 0.31 10.7 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPSase_L_chain PF00289.17 gi|435852502|ref|YP_007314088.1| - 0.0062 16.6 0.1 0.16 12.0 0.0 2.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain F420_oxidored PF03807.12 gi|435852502|ref|YP_007314088.1| - 0.0082 16.5 2.8 0.58 10.6 0.2 3.0 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|435852502|ref|YP_007314088.1| - 0.011 15.7 6.7 0.29 11.2 0.2 3.6 4 0 0 4 4 4 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|435852502|ref|YP_007314088.1| - 0.012 14.6 0.7 0.055 12.5 0.1 2.0 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.12 gi|435852502|ref|YP_007314088.1| - 0.019 14.0 0.6 0.15 11.0 0.1 2.2 2 0 0 2 2 2 0 Thi4 family RTC PF01137.16 gi|435852503|ref|YP_007314089.1| - 6.6e-81 270.4 0.1 7.6e-81 270.2 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|435852503|ref|YP_007314089.1| - 1.6e-19 69.8 0.1 3.4e-19 68.7 0.1 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain PTS_2-RNA PF01885.11 gi|435852504|ref|YP_007314090.1| - 9.1e-41 139.2 0.0 1.1e-40 138.9 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family tRNA_anti-codon PF01336.20 gi|435852505|ref|YP_007314091.1| - 2.7e-25 88.0 4.2 1.2e-10 41.1 0.1 3.7 2 1 0 3 3 3 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|435852505|ref|YP_007314091.1| - 9.3e-05 22.1 0.5 0.92 9.2 0.0 3.4 3 0 0 3 3 3 2 Replication factor-A C terminal domain DUF3127 PF11325.3 gi|435852505|ref|YP_007314091.1| - 0.00085 19.2 0.1 0.054 13.5 0.0 3.0 2 1 0 2 2 2 1 Domain of unknown function (DUF3127) DUF2240 PF09999.4 gi|435852505|ref|YP_007314091.1| - 0.0036 16.7 0.0 0.007 15.8 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) CBS PF00571.23 gi|435852506|ref|YP_007314092.1| - 3.9e-24 84.1 8.5 1.6e-13 50.1 0.1 2.4 3 0 0 3 3 3 2 CBS domain PhnA_Zn_Ribbon PF08274.7 gi|435852506|ref|YP_007314092.1| - 0.0014 18.3 0.8 0.0025 17.5 0.6 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon CBS PF00571.23 gi|435852507|ref|YP_007314093.1| - 3.8e-51 170.6 11.1 2.3e-14 52.8 0.1 4.0 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|435852508|ref|YP_007314094.1| - 8.5e-56 185.5 5.3 5e-14 51.8 0.0 4.3 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|435852509|ref|YP_007314095.1| - 2.3e-39 132.8 14.2 5.9e-11 41.9 0.1 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|435852510|ref|YP_007314096.1| - 2e-44 149.0 10.0 4.5e-13 48.7 0.1 4.1 4 0 0 4 4 4 4 CBS domain DUF4342 PF14242.1 gi|435852510|ref|YP_007314096.1| - 0.24 11.1 4.9 0.24 11.1 0.2 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4342) DNA_ligase_A_M PF01068.16 gi|435852511|ref|YP_007314097.1| - 1.4e-21 76.7 0.0 3.3e-21 75.5 0.0 1.6 1 1 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|435852511|ref|YP_007314097.1| - 1.2e-08 34.9 0.0 8.1e-08 32.2 0.0 2.2 1 1 0 1 1 1 1 RNA ligase GTP_EFTU_D2 PF03144.20 gi|435852512|ref|YP_007314098.1| - 3.1e-09 36.8 0.4 1.9e-08 34.2 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|435852512|ref|YP_007314098.1| - 1.6e-06 27.6 0.2 0.00023 20.7 0.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.22 gi|435852512|ref|YP_007314098.1| - 2.7e-06 26.9 0.2 0.001 18.5 0.0 2.2 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain AAA_14 PF13173.1 gi|435852512|ref|YP_007314098.1| - 0.01 15.7 0.1 0.1 12.4 0.0 2.4 2 1 1 3 3 3 0 AAA domain PduV-EutP PF10662.4 gi|435852512|ref|YP_007314098.1| - 0.048 13.1 0.6 0.15 11.5 0.2 2.0 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|435852512|ref|YP_007314098.1| - 0.062 13.8 1.4 0.12 12.8 0.1 2.2 3 0 0 3 3 3 0 Miro-like protein AAA_17 PF13207.1 gi|435852512|ref|YP_007314098.1| - 0.15 12.8 0.1 0.42 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain Meth_synt_2 PF01717.13 gi|435852514|ref|YP_007314100.1| - 1.5e-05 24.1 0.0 0.023 13.7 0.0 2.2 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain SSF PF00474.12 gi|435852516|ref|YP_007314102.1| - 1.4e-37 129.2 34.6 2e-37 128.8 24.0 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family PRA1 PF03208.14 gi|435852516|ref|YP_007314102.1| - 0.14 11.5 0.1 0.14 11.5 0.1 4.1 3 1 0 4 4 4 0 PRA1 family protein Nramp PF01566.13 gi|435852516|ref|YP_007314102.1| - 0.86 8.3 40.7 0.0039 16.0 18.9 2.7 1 1 1 2 2 2 0 Natural resistance-associated macrophage protein NurA PF09376.5 gi|435852517|ref|YP_007314103.1| - 6.3e-25 88.0 0.0 8.2e-25 87.7 0.0 1.2 1 0 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|435852518|ref|YP_007314104.1| - 7.1e-27 94.6 0.2 1.2e-26 93.9 0.1 1.3 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|435852518|ref|YP_007314104.1| - 3.8e-13 49.7 0.0 9.3e-13 48.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|435852518|ref|YP_007314104.1| - 2.5e-08 32.7 0.0 7.9e-05 21.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|435852518|ref|YP_007314104.1| - 1.5e-07 31.1 0.0 0.0036 16.7 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA PF00004.24 gi|435852518|ref|YP_007314104.1| - 1.4e-06 28.4 0.1 0.066 13.4 0.1 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|435852518|ref|YP_007314104.1| - 2.6e-05 24.3 0.0 0.002 18.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|435852518|ref|YP_007314104.1| - 9.4e-05 21.1 0.0 0.00055 18.6 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.10 gi|435852518|ref|YP_007314104.1| - 0.00022 21.1 0.0 0.048 13.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Zot PF05707.7 gi|435852518|ref|YP_007314104.1| - 0.00036 20.0 0.0 0.0011 18.5 0.0 1.8 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_16 PF13191.1 gi|435852518|ref|YP_007314104.1| - 0.0011 19.0 0.0 0.062 13.2 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain DEAD PF00270.24 gi|435852518|ref|YP_007314104.1| - 0.0014 18.1 0.0 2 7.8 0.0 2.6 2 0 0 2 2 2 2 DEAD/DEAH box helicase RNA_helicase PF00910.17 gi|435852518|ref|YP_007314104.1| - 0.0051 16.9 0.0 0.012 15.8 0.0 1.6 1 0 0 1 1 1 1 RNA helicase T2SE PF00437.15 gi|435852518|ref|YP_007314104.1| - 0.014 14.3 0.0 0.028 13.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.4 gi|435852518|ref|YP_007314104.1| - 0.026 13.4 0.0 0.19 10.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|435852518|ref|YP_007314104.1| - 0.029 14.6 0.0 0.067 13.4 0.0 1.6 1 0 0 1 1 1 0 ABC transporter PIF1 PF05970.9 gi|435852518|ref|YP_007314104.1| - 0.044 12.7 0.0 0.086 11.7 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_17 PF13207.1 gi|435852518|ref|YP_007314104.1| - 0.044 14.5 0.2 0.36 11.6 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|435852518|ref|YP_007314104.1| - 0.047 13.4 0.0 0.5 10.1 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|435852518|ref|YP_007314104.1| - 0.066 12.6 0.1 0.57 9.5 0.0 2.4 2 1 1 3 3 3 0 AAA domain AAA_33 PF13671.1 gi|435852518|ref|YP_007314104.1| - 0.067 13.0 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|435852518|ref|YP_007314104.1| - 0.068 12.8 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|435852518|ref|YP_007314104.1| - 0.093 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Latarcin PF10279.4 gi|435852519|ref|YP_007314105.1| - 0.0084 16.2 0.3 0.0094 16.1 0.2 1.0 1 0 0 1 1 1 1 Latarcin precursor RHH_1 PF01402.16 gi|435852519|ref|YP_007314105.1| - 0.014 15.2 0.1 0.056 13.3 0.0 2.0 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family DUF4113 PF13438.1 gi|435852519|ref|YP_007314105.1| - 0.13 11.9 1.1 1.7 8.2 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4113) AP_endonuc_2 PF01261.19 gi|435852520|ref|YP_007314106.1| - 2.2e-37 128.4 0.1 2.7e-37 128.1 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel RNA_binding PF01877.12 gi|435852521|ref|YP_007314107.1| - 2.1e-19 69.7 0.0 2.8e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 RNA binding AAA_18 PF13238.1 gi|435852522|ref|YP_007314108.1| - 5.8e-13 49.2 0.0 7.5e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|435852522|ref|YP_007314108.1| - 1.7e-10 41.7 0.1 2.2e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|435852522|ref|YP_007314108.1| - 1.5e-05 24.8 0.1 4.2e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|435852522|ref|YP_007314108.1| - 0.01 15.2 0.5 0.23 10.8 0.1 2.2 1 1 0 2 2 2 0 Dephospho-CoA kinase Dus PF01207.12 gi|435852523|ref|YP_007314109.1| - 5e-77 258.7 0.0 6.1e-77 258.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Oxidored_FMN PF00724.15 gi|435852523|ref|YP_007314109.1| - 0.00037 19.6 0.0 0.00062 18.8 0.0 1.4 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|435852523|ref|YP_007314109.1| - 0.0024 17.1 0.1 0.0039 16.4 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein SOR_SNZ PF01680.12 gi|435852523|ref|YP_007314109.1| - 0.0025 17.4 1.0 1.9 8.0 0.1 2.3 1 1 1 2 2 2 2 SOR/SNZ family PEP_mutase PF13714.1 gi|435852523|ref|YP_007314109.1| - 0.0027 16.9 0.4 0.013 14.7 0.3 1.8 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase ThiG PF05690.9 gi|435852523|ref|YP_007314109.1| - 0.005 15.9 0.2 0.011 14.8 0.0 1.5 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Radical_SAM PF04055.16 gi|435852523|ref|YP_007314109.1| - 0.03 14.5 0.1 0.39 10.8 0.1 2.1 1 1 0 1 1 1 0 Radical SAM superfamily POR PF01558.13 gi|435852524|ref|YP_007314110.1| - 2.3e-42 144.8 0.2 2.6e-42 144.6 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|435852525|ref|YP_007314111.1| - 4e-13 48.3 15.4 2.5e-07 29.9 1.6 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435852525|ref|YP_007314111.1| - 1.7e-11 43.6 9.0 2.7e-11 43.0 6.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435852525|ref|YP_007314111.1| - 1e-10 41.7 19.3 3.3e-08 33.7 7.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435852525|ref|YP_007314111.1| - 1.1e-10 40.9 10.3 4.3e-05 23.1 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|435852525|ref|YP_007314111.1| - 2e-10 40.3 5.3 3e-10 39.8 3.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|435852525|ref|YP_007314111.1| - 6.1e-10 38.4 10.1 1.9e-05 24.3 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|435852525|ref|YP_007314111.1| - 4.2e-08 33.3 10.0 6.3e-08 32.7 6.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852525|ref|YP_007314111.1| - 1.1e-05 25.9 10.5 0.012 16.1 0.8 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|435852525|ref|YP_007314111.1| - 3.5e-05 23.7 12.6 0.013 15.7 1.6 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|435852525|ref|YP_007314111.1| - 3.6e-05 24.4 11.2 0.0022 18.7 1.7 2.3 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|435852525|ref|YP_007314111.1| - 7.8e-05 22.6 12.0 0.0027 17.6 8.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|435852525|ref|YP_007314111.1| - 0.00018 21.8 11.1 0.0033 17.7 0.9 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|435852525|ref|YP_007314111.1| - 0.0017 18.6 13.0 0.079 13.3 1.7 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|435852525|ref|YP_007314111.1| - 0.0024 18.2 8.0 0.17 12.3 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|435852525|ref|YP_007314111.1| - 0.026 14.4 4.1 0.032 14.1 2.9 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|435852525|ref|YP_007314111.1| - 0.33 11.6 16.8 2.5 8.8 2.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|435852526|ref|YP_007314112.1| - 1.5e-68 230.7 0.2 2e-68 230.3 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|435852526|ref|YP_007314112.1| - 1.2e-08 34.9 0.0 2.4e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPR_12 PF13424.1 gi|435852526|ref|YP_007314112.1| - 0.049 13.5 0.4 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPP_enzyme_C PF02775.16 gi|435852527|ref|YP_007314113.1| - 5.7e-27 94.1 0.2 7.7e-27 93.7 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HhH-GPD PF00730.20 gi|435852528|ref|YP_007314114.1| - 6.1e-23 81.1 0.0 7.7e-23 80.8 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|435852528|ref|YP_007314114.1| - 5.3e-10 38.4 0.2 2.6e-09 36.2 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|435852528|ref|YP_007314114.1| - 0.00021 21.3 2.7 0.00035 20.6 1.9 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|435852528|ref|YP_007314114.1| - 0.00027 21.0 0.1 0.069 13.3 0.0 2.3 1 1 1 2 2 2 2 Helix-hairpin-helix domain DUF3349 PF11829.3 gi|435852528|ref|YP_007314114.1| - 0.00052 20.3 0.0 0.0026 18.1 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3349) PqqD PF05402.7 gi|435852528|ref|YP_007314114.1| - 0.15 12.0 0.0 0.8 9.7 0.0 2.2 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) Sulfate_transp PF00916.15 gi|435852529|ref|YP_007314115.1| - 2.6e-67 226.7 19.5 2.6e-67 226.7 13.5 2.3 1 1 1 2 2 2 1 Sulfate transporter family Sulfate_tra_GLY PF13792.1 gi|435852529|ref|YP_007314115.1| - 3.9e-19 68.1 7.3 3.9e-19 68.1 5.1 3.7 4 1 0 4 4 4 1 Sulfate transporter N-terminal domain with GLY motif STAS PF01740.16 gi|435852529|ref|YP_007314115.1| - 1.5e-13 50.1 0.0 3.1e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 STAS domain Aldo_ket_red PF00248.16 gi|435852530|ref|YP_007314116.1| - 2.3e-38 131.6 0.0 3.5e-38 131.0 0.0 1.3 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|435852530|ref|YP_007314116.1| - 4.6e-11 42.8 9.3 8.6e-11 42.0 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435852530|ref|YP_007314116.1| - 8.2e-09 35.5 8.6 1.6e-08 34.7 6.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|435852530|ref|YP_007314116.1| - 1.9e-07 30.9 8.5 3.3e-07 30.2 5.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|435852530|ref|YP_007314116.1| - 2.5e-07 31.0 1.0 0.0012 19.1 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|435852530|ref|YP_007314116.1| - 0.00024 20.6 4.1 0.0012 18.4 0.1 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_10 PF13237.1 gi|435852530|ref|YP_007314116.1| - 0.00062 19.5 14.3 0.0032 17.2 1.2 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435852530|ref|YP_007314116.1| - 0.001 18.8 9.5 0.17 11.7 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|435852530|ref|YP_007314116.1| - 0.0025 18.5 4.2 0.32 11.7 0.3 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|435852530|ref|YP_007314116.1| - 0.0036 17.1 10.5 0.055 13.4 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|435852530|ref|YP_007314116.1| - 0.0071 15.9 8.9 0.028 14.0 0.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|435852530|ref|YP_007314116.1| - 0.0094 16.2 15.5 0.028 14.7 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|435852530|ref|YP_007314116.1| - 0.88 9.9 15.6 0.13 12.6 2.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435852530|ref|YP_007314116.1| - 3 7.8 14.8 0.069 13.0 1.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Disaggr_repeat PF06848.6 gi|435852531|ref|YP_007314117.1| - 1.3e-152 503.7 20.1 2.7e-77 258.3 3.9 3.1 3 0 0 3 3 3 2 Disaggregatase related repeat Disaggr_assoc PF08480.5 gi|435852531|ref|YP_007314117.1| - 1.2e-43 148.8 23.7 1.7e-43 148.4 14.1 3.0 3 0 0 3 3 3 1 Disaggregatase related PKD PF00801.15 gi|435852531|ref|YP_007314117.1| - 5.1e-22 77.4 18.5 2.4e-11 43.1 1.9 3.8 3 0 0 3 3 3 2 PKD domain TGFb_propeptide PF00688.13 gi|435852531|ref|YP_007314117.1| - 1e-11 44.5 0.0 0.21 10.8 0.0 4.2 4 0 0 4 4 4 4 TGF-beta propeptide Y_Y_Y PF07495.8 gi|435852531|ref|YP_007314117.1| - 1.2e-05 24.9 1.2 0.082 12.6 0.1 3.1 2 0 0 2 2 2 2 Y_Y_Y domain Beta_helix PF13229.1 gi|435852531|ref|YP_007314117.1| - 0.00019 21.2 33.7 0.00019 21.2 23.3 4.4 2 2 2 4 4 4 2 Right handed beta helix region DUF4625 PF15418.1 gi|435852531|ref|YP_007314117.1| - 0.00059 19.9 8.6 0.28 11.3 0.1 4.5 4 2 2 6 6 6 2 Domain of unknown function (DUF4625) He_PIG PF05345.7 gi|435852531|ref|YP_007314117.1| - 0.00083 19.3 8.4 0.35 10.9 0.8 4.0 2 0 0 2 2 2 2 Putative Ig domain Hexapep PF00132.19 gi|435852532|ref|YP_007314118.1| - 1.5e-09 36.8 11.3 0.00056 19.3 3.8 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|435852532|ref|YP_007314118.1| - 0.00058 19.3 14.7 0.25 10.9 4.4 3.7 3 1 1 4 4 4 4 Hexapeptide repeat of succinyl-transferase Tap-RNA_bind PF09162.5 gi|435852532|ref|YP_007314118.1| - 0.0034 16.9 0.0 0.0058 16.1 0.0 1.4 1 0 0 1 1 1 1 Tap, RNA-binding DUF362 PF04015.7 gi|435852533|ref|YP_007314119.1| - 1.3e-63 214.2 0.1 1.8e-63 213.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|435852533|ref|YP_007314119.1| - 3e-08 32.9 13.8 0.00038 19.9 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|435852533|ref|YP_007314119.1| - 4e-06 26.4 14.7 0.0075 16.1 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|435852533|ref|YP_007314119.1| - 1.7e-05 24.4 14.2 3.6e-05 23.4 9.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|435852533|ref|YP_007314119.1| - 3.6e-05 24.0 13.7 9.5e-05 22.7 9.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|435852533|ref|YP_007314119.1| - 0.00012 21.8 14.5 0.00026 20.7 10.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|435852533|ref|YP_007314119.1| - 0.00014 22.0 13.9 0.0003 20.9 9.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|435852533|ref|YP_007314119.1| - 0.00015 21.4 14.4 0.00086 19.0 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|435852533|ref|YP_007314119.1| - 0.0033 17.7 8.9 0.13 12.5 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|435852533|ref|YP_007314119.1| - 0.0063 17.0 7.8 0.76 10.3 0.6 3.4 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|435852533|ref|YP_007314119.1| - 0.015 16.0 12.5 0.23 12.2 1.3 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|435852533|ref|YP_007314119.1| - 0.017 15.1 14.7 0.69 9.9 4.7 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain DUF2088 PF09861.4 gi|435852533|ref|YP_007314119.1| - 0.026 13.5 0.0 0.048 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) Fer4_13 PF13370.1 gi|435852533|ref|YP_007314119.1| - 0.37 11.2 7.6 0.28 11.6 1.1 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|435852533|ref|YP_007314119.1| - 2.5 8.8 19.3 1.1 9.9 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain adh_short PF00106.20 gi|435852534|ref|YP_007314120.1| - 7.5e-39 133.3 0.5 9.5e-39 132.9 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|435852534|ref|YP_007314120.1| - 1.2e-29 103.8 0.9 1.5e-29 103.4 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|435852534|ref|YP_007314120.1| - 2.6e-18 66.3 0.3 3.4e-18 65.9 0.2 1.1 1 0 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|435852534|ref|YP_007314120.1| - 0.00014 21.5 0.1 0.00032 20.4 0.0 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Epimerase PF01370.16 gi|435852534|ref|YP_007314120.1| - 0.00024 20.6 1.1 0.00061 19.2 0.7 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|435852534|ref|YP_007314120.1| - 0.012 14.7 0.4 0.028 13.4 0.1 1.8 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ArsC PF03960.10 gi|435852534|ref|YP_007314120.1| - 0.032 14.2 0.1 0.24 11.4 0.1 2.1 1 1 0 1 1 1 0 ArsC family NAD_binding_10 PF13460.1 gi|435852534|ref|YP_007314120.1| - 0.043 13.8 0.2 0.081 12.9 0.1 1.7 1 1 0 1 1 1 0 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|435852534|ref|YP_007314120.1| - 0.053 12.4 0.0 0.079 11.8 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_synthase PF02540.12 gi|435852535|ref|YP_007314121.1| - 1.3e-54 184.6 0.5 2e-34 118.5 0.1 2.0 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|435852535|ref|YP_007314121.1| - 0.004 15.7 0.0 0.015 13.8 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|435852535|ref|YP_007314121.1| - 0.0043 16.3 0.0 0.18 11.0 0.0 2.4 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|435852535|ref|YP_007314121.1| - 0.13 11.7 0.0 0.28 10.6 0.0 1.6 1 0 0 1 1 1 0 PP-loop family NAD_synthase PF02540.12 gi|435852536|ref|YP_007314122.1| - 0.00018 20.4 0.0 0.00028 19.8 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|435852536|ref|YP_007314122.1| - 0.0014 18.1 0.0 0.0023 17.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|435852536|ref|YP_007314122.1| - 0.0016 17.0 0.1 0.038 12.5 0.0 2.1 1 1 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|435852536|ref|YP_007314122.1| - 0.0038 16.5 0.0 0.0089 15.3 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|435852536|ref|YP_007314122.1| - 0.011 15.0 0.2 0.041 13.2 0.0 2.0 1 1 1 2 2 2 0 ATP-binding region ATP_bind_3 PF01171.15 gi|435852536|ref|YP_007314122.1| - 0.034 13.6 0.0 0.06 12.8 0.0 1.4 1 0 0 1 1 1 0 PP-loop family Cytomega_UL84 PF06284.6 gi|435852536|ref|YP_007314122.1| - 0.11 10.8 0.0 0.15 10.4 0.0 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein AMP-binding PF00501.23 gi|435852537|ref|YP_007314123.1| - 4.2e-69 232.9 0.0 5e-69 232.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|435852537|ref|YP_007314123.1| - 1.3e-08 35.6 0.0 3.1e-08 34.4 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PP-binding PF00550.20 gi|435852538|ref|YP_007314124.1| - 6.1e-06 26.4 0.4 7.2e-06 26.1 0.3 1.1 1 0 0 1 1 1 1 Phosphopantetheine attachment site Acetyltransf_1 PF00583.19 gi|435852539|ref|YP_007314125.1| - 6.2e-14 51.7 0.0 1.4e-13 50.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|435852539|ref|YP_007314125.1| - 2.1e-10 40.5 0.1 2e-08 34.2 0.0 2.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|435852539|ref|YP_007314125.1| - 3.3e-10 40.1 0.0 1.4e-07 31.6 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|435852539|ref|YP_007314125.1| - 1.8e-06 27.6 0.0 3.2e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|435852539|ref|YP_007314125.1| - 3.5e-06 26.8 0.0 0.00058 19.7 0.0 2.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|435852539|ref|YP_007314125.1| - 9.4e-06 25.8 0.0 5.3e-05 23.3 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|435852539|ref|YP_007314125.1| - 4.1e-05 23.5 0.0 0.00034 20.5 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|435852539|ref|YP_007314125.1| - 0.002 17.9 0.0 0.0044 16.8 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase IMS PF00817.15 gi|435852540|ref|YP_007314126.1| - 3.6e-39 133.9 0.1 6.4e-39 133.1 0.1 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_HHH PF11798.3 gi|435852540|ref|YP_007314126.1| - 9.2e-11 41.1 0.0 2.4e-10 39.8 0.0 1.8 1 0 0 1 1 1 1 IMS family HHH motif IMS_C PF11799.3 gi|435852540|ref|YP_007314126.1| - 4.9e-10 39.4 0.2 8e-10 38.7 0.2 1.3 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain HHH_5 PF14520.1 gi|435852540|ref|YP_007314126.1| - 0.0001 22.3 0.0 0.00026 21.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|435852540|ref|YP_007314126.1| - 0.0061 16.4 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus Ten1_2 PF15490.1 gi|435852540|ref|YP_007314126.1| - 0.14 11.7 1.1 2 8.0 0.0 2.8 2 1 0 3 3 3 0 Telomere-capping, CST complex subunit FTR_C PF02741.10 gi|435852542|ref|YP_007314128.1| - 8e-68 226.9 1.9 8e-68 226.9 1.3 1.4 2 0 0 2 2 2 1 FTR, proximal lobe FTR PF01913.13 gi|435852542|ref|YP_007314128.1| - 8.1e-65 216.9 0.4 1.5e-64 216.0 0.1 1.6 2 0 0 2 2 2 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase TraB PF01963.12 gi|435852543|ref|YP_007314129.1| - 1.6e-55 188.3 0.0 2.4e-55 187.7 0.0 1.2 1 0 0 1 1 1 1 TraB family TOBE PF03459.12 gi|435852543|ref|YP_007314129.1| - 0.0034 17.4 0.4 1.3 9.1 0.0 2.8 3 0 0 3 3 3 2 TOBE domain Nit_Regul_Hom PF10126.4 gi|435852543|ref|YP_007314129.1| - 0.076 12.7 0.5 0.22 11.2 0.0 2.0 3 0 0 3 3 3 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII DUF399 PF04187.8 gi|435852543|ref|YP_007314129.1| - 0.077 12.4 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF399 CBS PF00571.23 gi|435852544|ref|YP_007314130.1| - 1.3e-30 104.8 3.7 1.7e-17 62.9 0.6 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|435852544|ref|YP_007314130.1| - 8e-21 73.8 14.4 6.9e-15 54.4 6.2 2.5 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|435852544|ref|YP_007314130.1| - 0.00017 21.0 5.7 0.00017 21.0 4.0 1.9 1 1 0 1 1 1 1 Peptidase M50B-like DUF1230 PF06799.6 gi|435852544|ref|YP_007314130.1| - 4.2 7.2 6.6 1.1 9.1 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1230) Pyridoxal_deC PF00282.14 gi|435852545|ref|YP_007314131.1| - 1.2e-30 106.1 0.0 1.9e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|435852545|ref|YP_007314131.1| - 1.5e-08 33.8 0.0 3e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|435852545|ref|YP_007314131.1| - 0.0025 16.9 0.0 0.004 16.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase